HHsearch alignment for GI: 254780413 and conserved domain: pfam08448

>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.26  E-value=4.4e-11  Score=99.13  Aligned_cols=106  Identities=20%  Similarity=0.296  Sum_probs=84.6

Q ss_pred             HHHHCCHHEEECCCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC
Q ss_conf             97422043078599838721568998848960320786443345645627789999988606984022348887638972
Q gi|254780413|r  458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK  537 (820)
Q Consensus       458 le~~~~gI~~~D~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (820)
T Consensus         1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~   77 (110)
T pfam08448         1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLERALRRALEGEEPIDFL-EEL--LLNGE   77 (110)
T ss_pred             CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-EEE--CCCCC
T ss_conf             998573537994999699993474667098989980951210068034566777899997389558866-430--25885


Q ss_pred             EEEEEEEEEECC--CCC--EEEEEEEEHHHHHH
Q ss_conf             899999988717--887--39999865144443
Q gi|254780413|r  538 LLSLRIIIKKLP--FSS--CYSLTMHDISEWKQ  566 (820)
Q Consensus       538 ~~~~~~~~~~~~--~~~--~~~~v~~Dite~k~  566 (820)
T Consensus        78 ~~~~~~~~~pi~d~~G~~~g~v~~~~DITerKq  110 (110)
T pfam08448        78 ERHYELRLTPLRDPDGEVIGVLVISRDITERRR  110 (110)
T ss_pred             CEEEEEEEEEEECCCCCEEEEEEEEEECCHHCC
T ss_conf             200043576689899999999999998833129