HHsearch alignment for GI: 254780413 and conserved domain: pfam08670
>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=96.18 E-value=0.088 Score=31.02 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=70.7
Q ss_pred HHHHHHHHCCHHEEEC--CCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 9999974220430785--99838721568998848960320786443345645627789999988606984022348887
Q gi|254780413|r 454 LCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 (820)
Q Consensus 454 L~~ile~~~~gI~~~D--~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (820)
T Consensus 34 ~k~L~-~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y~--GiR 110 (148)
T pfam08670 34 LKALW-HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLYS--GVR 110 (148)
T ss_pred HHHHH-CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC--EEE
T ss_conf 99996-399789976799897465414999999668899984596665168352899999899999818633788--168
Q ss_pred ECCCCCEEEEEE-EEEECCCC
Q ss_conf 638972899999-98871788
Q gi|254780413|r 532 STKEEKLLSLRI-IIKKLPFS 551 (820)
Q Consensus 532 ~~~~~~~~~~~~-~~~~~~~~ 551 (820)
T Consensus 111 iss~Grrf~ie~a~vW~v~d~ 131 (148)
T pfam08670 111 ISSMGRRFSIEQAVAWKLLDE 131 (148)
T ss_pred ECCCCCEEEECCEEEEEEECC
T ss_conf 827998899912799888858