HHsearch alignment for GI: 254780413 and conserved domain: pfam08670

>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=96.18  E-value=0.088  Score=31.02  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             HHHHHHHHCCHHEEEC--CCCEEEEEHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf             9999974220430785--99838721568998848960320786443345645627789999988606984022348887
Q gi|254780413|r  454 LCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG  531 (820)
Q Consensus       454 L~~ile~~~~gI~~~D--~~G~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (820)
T Consensus        34 ~k~L~-~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y~--GiR  110 (148)
T pfam08670        34 LKALW-HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLYS--GVR  110 (148)
T ss_pred             HHHHH-CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC--EEE
T ss_conf             99996-399789976799897465414999999668899984596665168352899999899999818633788--168


Q ss_pred             ECCCCCEEEEEE-EEEECCCC
Q ss_conf             638972899999-98871788
Q gi|254780413|r  532 STKEEKLLSLRI-IIKKLPFS  551 (820)
Q Consensus       532 ~~~~~~~~~~~~-~~~~~~~~  551 (820)
T Consensus       111 iss~Grrf~ie~a~vW~v~d~  131 (148)
T pfam08670       111 ISSMGRRFSIEQAVAWKLLDE  131 (148)
T ss_pred             ECCCCCEEEECCEEEEEEECC
T ss_conf             827998899912799888858