HHsearch alignment for GI: 254780413 and conserved domain: smart00086
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=93.63 E-value=0.27 Score=27.42 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=30.9
Q ss_pred EEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECCC
Q ss_conf 16886147988379999863001568873630556689852210
Q gi|254780413|r 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 (820)
Q Consensus 146 ~~~~~~~~g~~~~~~v~ls~~Pv~d~~g~~~G~rG~gv~r~~~~ 189 (820)
T Consensus 3 e~r~~~~dG~--~~w~~~~~~~~~~~~g~~~~~i--~~~~DIte 42 (43)
T smart00086 3 EYRLRRKDGS--YIWVLVSASPIRDEDGEVEGIL--GVVRDITE 42 (43)
T ss_pred EEEEECCCCC--EEEEEEEEEEEECCCCCEEEEE--EEEEECCC
T ss_conf 9999988999--9999999999999898999999--99971779