BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] (820 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 816 bits (2108), Expect = 0.0, Method: Composition-based stats. Identities = 820/820 (100%), Positives = 820/820 (100%) Query: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE Sbjct: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD Sbjct: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG Sbjct: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV Sbjct: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF Sbjct: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI Sbjct: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK Sbjct: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA Sbjct: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS Sbjct: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL Sbjct: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE Sbjct: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP Sbjct: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL Sbjct: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI Sbjct: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 >gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 1038 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 274/797 (34%), Positives = 425/797 (53%), Gaps = 50/797 (6%) Query: 56 DQNQESVSNTNYLDSEN-TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 D + T+ TF FD RF W + G EIS +L +G + ++ Sbjct: 242 DAPAQQAQKTHTEQPGPKTFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIV 301 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G R DV+++ D + I LL ++TW GK LWP+EGT L VP++LAALP+YSR+RE Sbjct: 302 GRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDRE 361 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQS--- 229 F GFRGFGIV + DP +G L + +K + + + D+ + Sbjct: 362 FLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVA 421 Query: 230 -----------------PPPHLRMKNKVSSLTEYYAHKDDV------LKTEKYPLLTSEE 266 P P R +KV SL A + LK ++ Sbjct: 422 NDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERAARPEGG 481 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGENLT 322 + E+ F I + ++ + S E + + + Sbjct: 482 LTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVKTRPAPELIQPDE 541 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + P+P ++S + Y N + L +T Y+S+DDI AGG+ L + D + Sbjct: 542 TALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLF-NSESDDGETRQ 600 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 ++L +D + A L+ I W +L ++ +P A+ Sbjct: 601 SMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAS------DDE 654 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ K F++ Sbjct: 655 EKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFA 714 Query: 503 QNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + YL + + L + +G + + L + I KLP + + + D Sbjct: 715 IESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRD 774 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN Sbjct: 775 ITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGN 834 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q AN Sbjct: 835 DRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQAN 894 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++R Sbjct: 895 RERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMR 954 Query: 741 VRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 VRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL KAMV+AN +F Sbjct: 955 VRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQF 1014 Query: 793 YIFSTPAKGTLIEIIFP 809 I S P +GT++EI+FP Sbjct: 1015 AIDSNPGQGTVVEIVFP 1031 >gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 1047 Score = 633 bits (1632), Expect = e-179, Method: Composition-based stats. Identities = 289/819 (35%), Positives = 439/819 (53%), Gaps = 56/819 (6%) Query: 37 EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96 E+ E + + +Q N FVFD RF W + G Sbjct: 232 EEMLPEPAESANADMVEQASADQPKPRN---------FVFDQDAPPARFIWKVGPDGAFT 282 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156 EIS +L TIG A ++G R DV+++ DP+ I LL +++TW GK +WP+EGT+ Sbjct: 283 EISPDLAATIGPNAADVVGRRFADVANVFGFDPDGSIAALLDKRDTWSGKRLMWPVEGTD 342 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH----EIKK 212 L VP++LAALP+YSR+REF+GFRGFG+V + DP +G L E + Sbjct: 343 LRVPVELAALPVYSRDREFTGFRGFGVVRPADAEKDPEEIGLVLAGGIPQTRKPVSETVE 402 Query: 213 GHSSVEKEKYDIFSQQ------------------SPPPHLRMKNKVSSLTEYYAHK---- 250 +SVE + S++ +P P R +KV SL A + Sbjct: 403 TVTSVEDDDILALSEEVANDDRPVATLPKPPLDIAPTPGRRESDKVISLLNACAQEKVAA 462 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 D ++ E L + E + +KQ + ++ S+ Sbjct: 463 DQARILKEREREERPEGGLTKTERNAFREIADRLRKQGLASSRSTSEPGALSEEAVADSP 522 Query: 311 LSAYFDEGENLTP--------ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 +E TP + P+P ++S + Y N + L LT Y+S+DDI Sbjct: 523 QPVAVEEAALHTPGPTHGDETALLANLPVPVIIHSGDTIHYVNQALLDLTGYESLDDIRG 582 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 AGG+ L ++ ++L R+D + A L+ I W +L ++ +P Sbjct: 583 AGGVDVLFNSESDDGETRQG-MVLRRADGSEEPVDAHLNAIAWRDGRALMLSLMPVAAPA 641 Query: 423 QFP--ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 E P +D K+ + V +L +IL+ +DG+ +I+ EG I S N + Sbjct: 642 TPAPVETAAAPVETPVAMDKDNEKQALADHVEELKTILDTATDGVVLIDPEGRIRSMNHS 701 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538 S LFGY E+ K F++ + YL + + L + +G + Sbjct: 702 ASALFGYDREETEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGF 761 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + L + I KLP + + + DI++WK+ + +L++A+K AE+ SS K++FLAR+SHEIRT Sbjct: 762 IPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRT 821 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL AIIGFSE++ +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ Sbjct: 822 PLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQ 881 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 FE VSL++A++EAI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ F Sbjct: 882 FEAVSLNDAIAEAIALMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRF 941 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG------- 771 T GGQ+I+ST++ N +V++RVRDTG+GMT E+E+A+KPF Q+ ++ + Sbjct: 942 TAPGGQVIVSTSYELNGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWR 1001 Query: 772 -EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EGTGLGLPL KAMV+AN +F I STP GT++EI FP Sbjct: 1002 NEGTGLGLPLTKAMVEANRAQFAIDSTPGHGTVVEIAFP 1040 >gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 1035 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 428/807 (53%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSL------TEYYAHKDDVL 254 + D+ + P P R +KV SL + A++ L Sbjct: 410 EDDVLALSEEVANDDHPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAANQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDHPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAANQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 5.6, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1 str. 16M] Length = 813 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 428/807 (53%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 16 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 67 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 68 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 127 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 128 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 187 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSL------TEYYAHKDDVL 254 + D+ + P P R +KV SL + A++ L Sbjct: 188 EDDVLALSEEVANDDHPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAANQAKFL 247 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 248 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 307 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 308 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 366 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 367 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 426 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 427 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 479 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 480 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 539 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 540 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 599 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 600 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 659 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 660 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 719 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 720 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 779 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 780 AMVEANRAQFAIDSNPGQGTVVEIVFP 806 Score = 38.1 bits (87), Expect = 5.6, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 254 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 310 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 311 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 367 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 368 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 414 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 415 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 474 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 475 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 533 >gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13] gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF 2653] Length = 1036 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 273/807 (33%), Positives = 425/807 (52%), Gaps = 55/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQMDTPAQQAQKTHGEQPGPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERAARPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEQPVDTHLNAIAWRGGRALMLSLMPVAAADLPAPAELPTA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 S------DDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 702 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 703 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 762 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 763 TRGFCAVLRDITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELM 822 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 823 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 882 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 883 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 942 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 943 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1002 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1003 AMVEANRAQFAIDSNPGQGTVVEIVFP 1029 Score = 37.7 bits (86), Expect = 7.5, Method: Composition-based stats. Identities = 50/565 (8%), Positives = 131/565 (23%), Gaps = 104/565 (18%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEVGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P ++ + ++ + + + + Sbjct: 195 ARLTDTPALHLLCIVGDAPDQTQT----------AAEAAPLPDNAEEVLEEILPEQMDTP 244 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + E+ F+ P R KV D L + Sbjct: 245 AQQAQKTHGEQPGPKTFAFDHDAPPARFIWKVG--------PDGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERAARPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----RKPFTV 499 ++L + I + + I N+A+ + GY D + Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYESLDDIRGAGGVDVLF 587 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLT 557 E + + + + + + + L L ++ + T Sbjct: 588 NSESDDGETRQSMVLRHADGSEQPVDTHLNAIAWRGGRALMLSLMPVAAADLPAPAELPT 647 Query: 558 MHDISEWKQEKNKLSHAKKIAEKES 582 D E + + + K I + + Sbjct: 648 ASDDEEKQALEAHVEELKTILDTAT 672 >gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19] gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292] gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName: Full=PleC-divJ homolog sensor gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Histidine kinase [Brucella melitensis biovar Abortus 2308] gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19] gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] Length = 1035 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPNL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 39.6 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPNLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.5 bits (88), Expect = 5.4, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MLLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. BO1] Length = 1036 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 276/807 (34%), Positives = 428/807 (53%), Gaps = 55/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQMDTPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + DI + P P R +KV SL A + L Sbjct: 410 EDDILALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERTARPEGGLTKTERNAFREIAERLRKQGLANTRAESETTVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + +D + ++L +D + +A L+ I W +L ++ +P AN Sbjct: 589 SESNDGETRQSMVLRHADGSEEPVNAHLNAIAWRGGRALMLSLMPVAAANLPVPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 S------DDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 702 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 703 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 762 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 763 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 822 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 823 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 882 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 883 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 942 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 943 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1002 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1003 AMVEANRAQFAIDSNPGQGTVVEIVFP 1029 >gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513] gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94] gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1] gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1] gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94] gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M490/95/1] gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] Length = 1035 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 5.9, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1] gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1] gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 1035 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 275/807 (34%), Positives = 427/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+L Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTLPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTLPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 >gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33] gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 1035 Score = 631 bits (1628), Expect = e-178, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 40.8 bits (94), Expect = 1.0, Method: Composition-based stats. Identities = 49/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + I ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIIKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 6.0, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870] gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68] gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5 str. B3196] Length = 1035 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 5.8, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MLLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 1035 Score = 631 bits (1627), Expect = e-178, Method: Composition-based stats. Identities = 275/807 (34%), Positives = 426/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 IG + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVIGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 125/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + +F P L++ Sbjct: 195 ARLTDTPALHLLCI-----VGDAQAQFQ--------TAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVIGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 5.8, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MLLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 1055 Score = 630 bits (1625), Expect = e-178, Method: Composition-based stats. Identities = 275/794 (34%), Positives = 426/794 (53%), Gaps = 58/794 (7%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 +FVF+ RF W + G EIS +L TIG A ++G R DV+++ DP+ Sbjct: 256 SFVFEQDAPPARFIWKVGPDGTFSEISPDLAATIGPNAADVVGRRFADVANVFGFDPDGS 315 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I LL +++TW GK +WP+EGT+L VP++LAALP+YSR+REF+GFRGFG+V + D Sbjct: 316 IAALLDKRDTWSGKRLMWPVEGTDLRVPVELAALPVYSRDREFTGFRGFGLVRPAEAEKD 375 Query: 193 PRALGKRLDKKFSHLH----EIKKGHSSVEKEKYDIFSQQ------------------SP 230 P +G L E + + VE + ++ +P Sbjct: 376 PEEIGLVLAGGIPQARKPVSEPVETATPVEDDDVLALGEEVANDDSPVATLPKPPLDIAP 435 Query: 231 PPHLRMKNKVSSL------TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 P R +KV SL + A + +LK + + E+ F I Sbjct: 436 TPGRRESDKVISLLNACAEEKVAADQARMLKEREREERPEGGLTKTERNAFREIADRLRK 495 Query: 285 KKQYFGTLQNNSKESFEY-------------------LSHRNHPSLSAYFDEGENLTPET 325 + + + + + Sbjct: 496 QGLANSRAETETVAISDEPVIDSSQPVEKTEVKASLIDEVTADEASLPSSGMAYGDETAL 555 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + P+P ++S + Y N + L LT Y+S+DDI AGG+ L ++ ++ Sbjct: 556 LANLPVPVIIHSGDKIHYVNQALLDLTGYESLDDIRGAGGVDVLFNSESDDGETRQG-MV 614 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L R++ + A L+ I W +L ++ +P A E + P +D K+ Sbjct: 615 LRRANGSEEPVDAHLNAISWREGRALMLSLMPVAAAPVSVEAVAAPAEAPVAIDKDDEKQ 674 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ K F++ + Sbjct: 675 ALADHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDETEGKFFSMLFAIES 734 Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 YL + + L + +G + + L + I KLP + + + DI++ Sbjct: 735 QRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQ 794 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 WK+ + +L++A+K AE+ SS K++FLAR+SHEIRTPL AIIGFSE++ +++FG +GN RY Sbjct: 795 WKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGSIGNDRY 854 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A++EAI+L+Q AN +R Sbjct: 855 RDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQPQANRER 914 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST++ N +V++RVRD Sbjct: 915 VIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEMNGDVVMRVRD 974 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIF 795 TG+GMT E+E+A+KPF Q+ ++ + EGTGLGLPL KAMV+AN +F I Sbjct: 975 TGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMVEANRAQFAID 1034 Query: 796 STPAKGTLIEIIFP 809 STP GT++EI FP Sbjct: 1035 STPGHGTVVEIAFP 1048 >gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330] gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330] Length = 1035 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 273/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFYTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 38.5 bits (88), Expect = 5.1, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10] gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] Length = 1035 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 6.0, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 1035 Score = 628 bits (1620), Expect = e-177, Method: Composition-based stats. Identities = 272/807 (33%), Positives = 424/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFYTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDTHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 38.9 bits (89), Expect = 3.5, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 80/299 (26%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ V L A+ + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEEPVDTHLNAIAWRG--GRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL 07-0026] Length = 1035 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 273/806 (33%), Positives = 425/806 (52%), Gaps = 56/806 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 AMV+AN +F I S P +GT++EI+F Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVF 1027 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + S + A L D+ + + ++ + Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L++ + P P L++ Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + D L + Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ G++ E + L + P + Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387 P VYS F F ++ ++ D E G L+ + + + + Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408 Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + + +++ ++ + Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468 Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455 E + + +L Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528 Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++L + I + + I N+A+ + GY L+ Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L S D + + E+ + + L++ ++ Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636 Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +L A ++ + E++T L Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667 Score = 38.1 bits (87), Expect = 5.9, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840] Length = 1035 Score = 628 bits (1619), Expect = e-177, Method: Composition-based stats. Identities = 274/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + M+G R DV+++ D + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADMVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT G Q+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 38.1 bits (87), Expect = 6.0, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365] gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686] gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365] gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] Length = 1035 Score = 627 bits (1618), Expect = e-177, Method: Composition-based stats. Identities = 273/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 D+ Q ++ T F FD RF W + G EIS +L Sbjct: 238 PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 +G + ++G R DV+++ + I LL ++TW GK LWP+EGT L VP++ Sbjct: 290 AAVVGPNSADIVGRRFSDVANVFGFYTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220 LAALP+YSR+REF GFRGFGIV + DP +G L + +K + + Sbjct: 350 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409 Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254 + D+ + P P R +KV SL A + L Sbjct: 410 EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 K ++ + E+ F I + ++ + S P+ Sbjct: 470 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529 Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + P+P ++S + Y N + L +T Y+S+DDI AGG+ L Sbjct: 530 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + ++L +D + A L+ I W +L ++ +P A+ Sbjct: 589 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 K+ +E V +L +IL+ +DG+ +I+ EG I S N + S LFGY ++ Sbjct: 649 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 K F++ + YL + + L + +G + + L + I KLP Sbjct: 702 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ Sbjct: 762 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++FGP+GN RY +Y I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E Sbjct: 822 ADEKFGPIGNDRYRDYLRDINRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 AI+L+Q AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT GGQ+I+ST+ Sbjct: 882 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782 + N +V++RVRDTG+GM+ E+E+A+KPF Q +++ R EGTGLGLPL K Sbjct: 942 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTK 1001 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 AMV+AN +F I S P +GT++EI+FP Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028 Score = 38.5 bits (88), Expect = 5.0, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 + PE LT + ++++++ G +++ E P ++ T Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532 Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 + V I + + +++ L G + I V + + Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + L +G+ P+D I R + Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 P L D++ L + ++ D P +R N +S Y Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + + + + N + +K F L Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755 >gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti 1021] gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell surface physiology and symbiosis [Sinorhizobium meliloti 1021] gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 1134 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 299/837 (35%), Positives = 421/837 (50%), Gaps = 76/837 (9%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSEN-----------TFVFDPIPRTVRFTWNI 89 + E E+ E F F R VRF W I Sbjct: 299 AQGELAPQDEAEAADLAEPETPLEAEPASGEPAADADRGGETADFAFAAGGRAVRFVWKI 358 Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA G EISEE +G A +IG+ D++D +DP++ I +LL R++TW GKT Sbjct: 359 DAEGRFSEISEEFASAVGPKAADVIGVSFTDLADRYDLDPDDKINELLHRRDTWSGKTIF 418 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 WP++GTNL VP+DLAALP YSR+REF GFRGFGIV + D +A G LD+ Sbjct: 419 WPVQGTNLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVPDAKAAGLALDRPAPAQIA 478 Query: 210 IKKGHSSVEKEKY----------------------------DIFSQQSPP------PHLR 235 S E D F + P P + Sbjct: 479 QASSDMSAEGAGAPQAEAGSKTGPDAGSGKDAAEAAPDVSEDPFRGEQPALRVVETPGRQ 538 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN-------------Q 282 +KV L E L + L E + Sbjct: 539 ASDKVIDLDERRPAGAGALTRGEQAAFREIARQLGEHFAPDQLPQEGKAEGRHEADTPPI 598 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFV 335 ++ + A E G ++ E +D+ P+ V Sbjct: 599 TPADTEESRQTEEAEAPGGWHDATPAGETPAAAMEPGLTARNGAAMSSEILDRLPVALLV 658 Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCI 394 + L +AN FL LT Y++++ E GGL L + + L R D I Sbjct: 659 HHGDALLHANAEFLRLTGYENLEAFEQEGGLEALFALGNEAGAAKPNGTMTLVRKDGRLI 718 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 A LH+I+W +++L + P + + G ++ +E+ +L Sbjct: 719 PVGAHLHSIRWEGKSALMLALTPAGASEAEKQAREDEGAA--------EASRLRMEIDEL 770 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 SILE +DG+ ++ R+G I + NR+ S LF Y D+ KPF + + YL Sbjct: 771 RSILETATDGVVVLGRDGDIRTMNRSASALFDYDEADMRGKPFAALFAHESQKAVIDYLQ 830 Query: 515 EILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + L + +G + L + I +L S+ Y + DI++WK+ + +L Sbjct: 831 GLSGHGVASVLNDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELR 890 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +AK+ AE ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+G+PRYIEYA I R Sbjct: 891 NAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGR 950 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA+SLVQ AN +R++IRTS + Sbjct: 951 SGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSG 1010 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 ++P ++AD RS+KQIALNIL+NAI FTPSGGQI++ST++ +N VILR+RDTG+GMT E Sbjct: 1011 SVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNE 1070 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L++AMKPF Q+ + RG+GTGLGLPL KAM +AN +F I S P +GTL+EI FP Sbjct: 1071 LDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFP 1127 >gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] Length = 1133 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 297/829 (35%), Positives = 421/829 (50%), Gaps = 69/829 (8%) Query: 42 ENPCHDSFEQSNFTDQNQESVSNTNYLDSENT-----FVFDPIPRTVRFTWNIDAHGYLK 96 ++ + T E S D++ F F R VRF W IDA G Sbjct: 306 QDEAEAADLAEPETPLEAEPASGEPAADADRGGETADFAFAAGGRAVRFVWKIDAEGRFS 365 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156 EISEE +G A +IG+ D++D +DP++ I +LL R++TW GKT WP++GTN Sbjct: 366 EISEEFASAVGPKAADVIGVSFTDLADRYDLDPDDKINELLHRRDTWSGKTIFWPVQGTN 425 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 L VP+DLAALP YSR+REF GFRGFGIV + D +A G LD+ S Sbjct: 426 LKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVPDAKAAGLALDRPAPAQTAQASSDMS 485 Query: 217 VEKEKYDIFSQ-------------QSPPP--------------------HLRMKNKVSSL 243 E P + +KV L Sbjct: 486 SEGAGAPQAEAGSKTGPAGSGKDAAEAAPDVSEDPFRGEQPALRVVETAGRQASDKVIDL 545 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ-------------YTKKQYFG 290 E L + L E + Sbjct: 546 DERRPAGAGALTRGEQAAFREIARQLGEHFAPDQLPQEGKAEGRHEADTSPSTPADTEES 605 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFVYSHGNLFY 343 ++ + A E G ++ E +D+ P+ V+ L + Sbjct: 606 RQTEKAEAPGGWHDATPAGETPAAAMEPGLTARNGAAMSSEILDRLPVALLVHHGDALLH 665 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 AN FL LT Y++++ E GGL L + + L R D I A LH+ Sbjct: 666 ANAEFLRLTGYENLEAFEQEGGLEALFALGNEAGAAKPNGTMTLVRKDGRLIPVGAHLHS 725 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 I+W +++L + P + + G ++ +E+ +L SILE + Sbjct: 726 IRWEGKSALMLALTPAGASEAEKQAREDEGAA--------EASRLRMEIDELRSILETAT 777 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 DG+ ++ R+G I + NR+ S LF Y D+ KPF + + YL + + Sbjct: 778 DGVVVLGRDGDIRTMNRSASALFDYDESDMRGKPFAALFAHESQKAVIDYLQGLSGHGVA 837 Query: 523 QTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L + +G + L + I +L S+ Y + DI++WK+ + +L +AK+ AE Sbjct: 838 SVLNDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAET 897 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+G+PRYIEYA I RSG VLDI Sbjct: 898 ANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDI 957 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 VNDLLDISKIE+G+M+L F V L+EAVSEA+SLVQ AN +R++IRTS + ++P ++AD Sbjct: 958 VNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVAD 1017 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 RS+KQIALNIL+NAI FTPSGGQI++ST++ +N VILR+RDTG+GMT EL++AMKPF Sbjct: 1018 DRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPF 1077 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + RG+GTGLGLPL KAM +AN +F I S P +GTL+EI FP Sbjct: 1078 RQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFP 1126 >gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain [Sinorhizobium fredii NGR234] Length = 1117 Score = 615 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 291/784 (37%), Positives = 421/784 (53%), Gaps = 54/784 (6%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F F P R VRF W IDA G EISEE +G + ++G+ +++ +DP+N Sbjct: 334 GFTFTPGSRAVRFVWKIDAEGCFSEISEEFAAAVGPKSADVVGLTFSELAARYDLDPDNK 393 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + LL R++TW GKT LWPIEGT+L VP+DLAALP YSR+REF GFRGFGIV + D Sbjct: 394 VNALLHRRDTWSGKTILWPIEGTSLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVED 453 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS-----------QQSPP---------- 231 +A G L + +E + + + S + PP Sbjct: 454 EKASGLSLGHIDTPRNEGMPAEAPSDDAPREPASLASDGTDTPRSEAEPPSAEDPFAGER 513 Query: 232 --------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----------- 272 P +KV L E+ L + L Q Sbjct: 514 PALRIVDIPARPPSDKVIDLDEHRPGSSGTLTRGEQAAFREIARQLGAQFSETTPPAAAD 573 Query: 273 ----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + ++ + E G ++ E +D+ Sbjct: 574 EDGKRPVDAASQAEAAGDMESLSSEDATAARQEETMPGAGDEAPPAPRGGVGMSSEILDR 633 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLY 387 P+ ++ L +ANP FL LT Y+ ++ + AGGL L + ++ + L Sbjct: 634 LPVALLIHHGDELLHANPEFLRLTGYRKLEAFQQAGGLEALFAYGAESGEHEPDGTMTLV 693 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 R++ SA LH+IQW ++L + P + + + ++ Sbjct: 694 RANGPLAPVSAHLHSIQWEGRSALMLALAPAAARAADMPSAGADASAG-------GEARL 746 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +E+ +L SILE +DG+ ++ ++G I + N + S LF Y +++ KPF + Sbjct: 747 RMEIDELRSILETATDGVVVLGQDGDIRTMNGSASALFNYDEDEMRGKPFAALFAHESQK 806 Query: 508 VMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + YL + + L + +G L L + I +L S+ Y + DI++WK Sbjct: 807 AVIDYLQGLSGHGVASVLNDGREAIGREAGGGFLPLFMTIGRLSSSNGYCAVIRDITQWK 866 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +L +AK+ AE ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+GNPRYIE Sbjct: 867 RTEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGNPRYIE 926 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I RSG VLDIVNDLLDISKIE+G+M L F V L+EAVSEA+SLVQ AN +R++ Sbjct: 927 YAGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQPQANSQRVI 986 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 IRTS + ++P ++AD RS+KQIALNIL+NAI FTPSGGQI++ST++ +N VILR+RDTG Sbjct: 987 IRTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSVILRIRDTG 1046 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT EL++AMKPF Q+ + RGEGTGLGLPL KAM +AN +F I S P +GTL+E Sbjct: 1047 IGMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSAPNEGTLVE 1106 Query: 806 IIFP 809 I FP Sbjct: 1107 ISFP 1110 Score = 44.2 bits (103), Expect = 0.099, Method: Composition-based stats. Identities = 38/428 (8%), Positives = 92/428 (21%), Gaps = 48/428 (11%) Query: 32 NGFETEKSKKENPCHDSF---EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN 88 +G +T +S+ E P + E+ + + + V D Sbjct: 491 DGTDTPRSEAEPPSAEDPFAGERPALRIVDIPARPP-------SDKVIDLDEH------R 537 Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + G L + + + +G + + + D + + Sbjct: 538 PGSSGTLTRGEQAAFR----EIARQLGAQFSETTPPAAADEDGKR---------PVDAAS 584 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + + A G G + LD+ L Sbjct: 585 QAEAAGDMESLSSEDATAARQEET-----MPGAGDEAPPAPRGGVGMSSEILDRLPVALL 639 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ + + + +L Y A + L+ + Sbjct: 640 IHHGDELLHANPEFLRLTGYRKLEAFQQAGGLEALFAYGAESGEHEPDGTMTLVRANGPL 699 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 P H+I + A + ++ Sbjct: 700 APVSAHLHSIQWEGRSALMLALAPAAARAADMPSAGADASAGGEARLRMEIDELRSILET 759 Query: 329 CPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 V G++ N S L Y + A ++ L Sbjct: 760 ATDGVVVLGQDGDIRTMNGSASALFNYDEDE------MRGKPFAALFAHESQKAVIDYLQ 813 Query: 388 RSDRTCIAA---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 +A+ R + L + ++ + + + + Sbjct: 814 GLSGHGVASVLNDGREAIGREAGGGFLPLFMTIGRLSSSNG----YCAVIRDITQWKRTE 869 Query: 445 RKMEIEVM 452 ++ Sbjct: 870 EELRNAKR 877 >gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 1138 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 299/814 (36%), Positives = 429/814 (52%), Gaps = 68/814 (8%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 + E+ + FVF R VRF W IDA G+ EISEE +G A + Sbjct: 328 TEKASSENAVEADQRREAADFVFAAGGRAVRFVWKIDAEGHFSEISEEFASAVGPKAADV 387 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 IG+ +++ +DP+N I +LL R++TW GKT WP++GTNL VP+DLAALP YSR+R Sbjct: 388 IGVTFTELAGRYGLDPDNRINELLHRRDTWSGKTIFWPVQGTNLKVPVDLAALPTYSRSR 447 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS---------------------------- 205 EF GFRGFGIV V D +A G LD+ + Sbjct: 448 EFDGFRGFGIVRVADAVPDAKAAGLSLDRAPAQKSSAAPEGADGPNAGSPPETGPADRRH 507 Query: 206 -HLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258 K D F + P P +K+ L + L + Sbjct: 508 AEAGNGKDAERVAPDPSEDPFRGEQPALRAVDTPDRPPSDKIIDLDQRRPAGAGTLTRGE 567 Query: 259 YPL--------------------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 +E S PE E F T + ++ + ++ Sbjct: 568 QAAFREIAKQLGEHFSVHDPLPPSQTEAESRPEAETFPTSKPANAEENEHTEATEAAGEQ 627 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 E + P A G ++ ET+D+ P+ V+ L + N FL LT Y +D Sbjct: 628 KSEAPAAAMEPGPPART--GAGISSETLDRLPVALLVHHGDELLHGNAEFLRLTGYDDLD 685 Query: 359 DIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 GGL L + + L R D I A LH+I+W +++L + P Sbjct: 686 AFAHEGGLEALFALGNEAGAARPDGTMTLVRKDGRLIPVGAHLHSIRWEGKSALMLALTP 745 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + D ++ ++ +E+ +L SILE +DG+ ++ +EG I + Sbjct: 746 A--------GASEAERQARDAESAAEASRLRMEIDELRSILETATDGVVVLGQEGDIRTM 797 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKE 535 NR+ S LF Y ++ KPF + + YL + + L + +G Sbjct: 798 NRSASALFDYDEAEMRGKPFATLFAHESQKAVIDYLHGLAGHGVASVLNDGREVIGREAA 857 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + L + I +L S+ Y + DI++WK+ + +L +AK+ AE ++HK++FLARVSHE Sbjct: 858 GGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTEFLARVSHE 917 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL AIIGFS+++ ++ FGP+G+PRYIEYA I RSG VLDIVNDLLDISKIE+G+M Sbjct: 918 IRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEM 977 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 +L F V L+EAVSEA+SLVQ AN +R++IRTS + ++P ++AD RS+KQIALNIL+NA Sbjct: 978 DLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANA 1037 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I FTPSGGQI++ST++ +N VILR+RDTG+GMT EL++AMKPF Q+ + RG+GTG Sbjct: 1038 IRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTG 1097 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGLPL KAM +AN +F I S P +GTL+E+ FP Sbjct: 1098 LGLPLTKAMTEANRAQFAITSAPNEGTLVEVSFP 1131 >gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 806 Score = 607 bits (1566), Expect = e-171, Method: Composition-based stats. Identities = 513/813 (63%), Positives = 619/813 (76%), Gaps = 18/813 (2%) Query: 1 MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60 MS DSI NP + T+NCK ++DLS K+ N S K NPC+ + + + Sbjct: 1 MSIDSITLNPPNSPTNNCKNTSKDLSLKETINNLGIRDSHKGNPCNQNHLEQSSPTGQNH 60 Query: 61 SV----SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116 + S + L+ EN+F+FD PRTVRFTW IDA G+L +SEEL +TIG YA KMIGM Sbjct: 61 APRTQISCSRNLEPENSFLFDSSPRTVRFTWKIDAQGHLNAVSEELSQTIGTYALKMIGM 120 Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 LCD++ IL ID +H+ DLL +QNTWY KTT WPIEGT+L+VPIDLAALPIYSR+REF Sbjct: 121 HLCDINHILQIDSKDHLFDLLTQQNTWYSKTTFWPIEGTDLHVPIDLAALPIYSRDREFV 180 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 GF+GFGI+ VN+ NDP+ LG L +KFS HEIKK HS ++KE Q+ P HL + Sbjct: 181 GFKGFGIIRVNQTKNDPKKLGTTLGEKFSQSHEIKKVHSFIKKENSPSLPYQTIPAHLDI 240 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNN 295 K++ S + Y+ D L T++++ ++++FHTINL K + + Sbjct: 241 KDRGSFPSGYFPKDKDD------NLATNKKNYFSKRDNFHTINLNQYIEKYPHPKESFED 294 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 S + NHPSLS YF EGENLTPE VDK PI FV S L YA+PSFLLL YK Sbjct: 295 SFQI-------NHPSLSTYFGEGENLTPEIVDKHPISLFVCSKERLLYASPSFLLLAGYK 347 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 SV+DIE GG+S LLDA KLS+ N + L+RSD T IA SA LHTIQWNRENSLAMTF Sbjct: 348 SVEDIEKVGGVSMLLDAQKLSNGNTHGSITLHRSDGTNIAVSAHLHTIQWNRENSLAMTF 407 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +PFEK N+ +++ QN I+ +TR + KMEIE+MQLCSILE+TSDGIAI+NR+G IL Sbjct: 408 VPFEKNNKLSDHISQNEIKSGYNNTRTDANKMEIEIMQLCSILESTSDGIAIVNRDGTIL 467 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 STNRA+ LF YP +DI+ KPF +F + +MNH + EI S+DL +TLEK +G T+E Sbjct: 468 STNRAIGTLFDYPAQDIIGKPFKIFFTHDNQIIMNHCMAEISSIDLGKTLEKTAVGCTRE 527 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 KL+SLRI +KKLPFS+CY L +HDISEWKQEKN+L HAKK+AEKE+SHK+DFLARVSHE Sbjct: 528 GKLISLRITMKKLPFSACYCLILHDISEWKQEKNELYHAKKMAEKENSHKNDFLARVSHE 587 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPLTAIIGFSEVIKNQRFGP+G+PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM Sbjct: 588 IRTPLTAIIGFSEVIKNQRFGPVGSPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 647 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 N HFE VSL+E +SEAISL++LYANEKRIL+RTSF+N+IP I ADLRS+KQIALNILSNA Sbjct: 648 NFHFESVSLNETISEAISLMELYANEKRILVRTSFSNDIPPIFADLRSIKQIALNILSNA 707 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 IHFTPSGGQI+IST +T N+EV+LRV+DTG+GMT+YELEKAMKPFGQIPNSQQ+RGEGTG Sbjct: 708 IHFTPSGGQIVISTAYTRNKEVVLRVKDTGIGMTDYELEKAMKPFGQIPNSQQVRGEGTG 767 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LGLPL KAMVDANMGKF +FSTP+KGTLIEIIF Sbjct: 768 LGLPLTKAMVDANMGKFSVFSTPSKGTLIEIIF 800 >gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 1190 Score = 604 bits (1558), Expect = e-170, Method: Composition-based stats. Identities = 296/838 (35%), Positives = 449/838 (53%), Gaps = 73/838 (8%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENT-FVFDPIPRTVRFTWNIDAHGYLKEISEE 101 +S + + + D + F F R RF W IDA G E+S E Sbjct: 348 PAVVESPVEHEEISPEPAAPEHDAVADGQPGEFTFKRNGRATRFVWKIDAEGRFSEVSRE 407 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 + +G +A K+ G DV+ ++DP+ I +LL R++TW G+T WP+E T+L VP+ Sbjct: 408 FAEAVGPHAAKVTGTAFTDVAAHFNLDPDGKIAELLARRDTWSGRTIYWPVENTSLIVPV 467 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHLHEIKKGHSSVE 218 DLAALP Y+R+R+F GFRGFG+V ++ DP LG L + + + + + ++ E Sbjct: 468 DLAALPTYTRSRDFDGFRGFGVVRLSDAIEDPMKLGLTLGAEEDQSARTPDATEEPAATE 527 Query: 219 KEKYDIF------------------------SQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + D + + P + + T D ++ Sbjct: 528 TDATDPAIAEETLQSAAEEHIAEEENTIPETADEPAPANEEPPALTIAETPNRRETDKII 587 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----------- 303 + + SL EQ F I + T + ++ + Sbjct: 588 QLHERRSAMPGGLSLSEQAAFREIARQLEPFGKRTETPEEGTQTEEDADTSPKPNAADEI 647 Query: 304 ---SHRNHPSLSAYFDEGEN-------------------------LTPETVDKCPIPFFV 335 + + P A D + L+ E VD+ P+ + Sbjct: 648 LSGATEDQPVEEAAPDAELSKPEEHLDPLGVLNTAIPSRVKMRNGLSDEIVDQLPLAILI 707 Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCI 394 ++ L + NP FL LT Y+S+ D++ GGL LL L +M+ R+D T + Sbjct: 708 HAGDRLIHGNPEFLRLTGYESLADLDHVGGLDALLQRHDLEGKTEQPGTMMVVRADDTLV 767 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +ARL +I+W +L + +P EK++ P PE + ++ K+++E+ + Sbjct: 768 PVTARLQSIRWEDGTALMLALMPLEKSDVSTPAEPVPEEARPERMIEKLA--KLQVEIEE 825 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L S LE +DG+ II ++G I S NR+ S LF + ++ KPF + + + YL Sbjct: 826 LQSTLETATDGVVIIGQDGDIRSMNRSASALFNFDDQETRGKPFVMLFAHESQKAVLDYL 885 Query: 514 TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + + L + +G + L + + +L S+ Y + DI++WK+ + +L Sbjct: 886 SGLSGHGVASVLNDGREVMGREASGGFVPLFMTMGRLNSSNGYCAVIRDITQWKRTEEEL 945 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +AK+ AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RFGP+G+ RY+EYA I Sbjct: 946 RNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHSRYVEYATDIG 1005 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RSG VLDIVNDLLDISKIE+G+M+L F V L+EA++EA+SLVQ AN +R++IRT+ + Sbjct: 1006 RSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVSLVQPQANSQRVIIRTALS 1065 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ N V++R+RDTGVGMT Sbjct: 1066 QAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEGNGSVVMRIRDTGVGMTRS 1125 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ELE+AMKPF Q+ + + RG+GTGLGLPL KAMVDAN F I S+P +GTL+E+ FP Sbjct: 1126 ELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFAINSSPNEGTLVEVTFP 1183 Score = 39.2 bits (90), Expect = 3.1, Method: Composition-based stats. Identities = 54/494 (10%), Positives = 119/494 (24%), Gaps = 37/494 (7%) Query: 75 VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134 F V F+ +D + + G I D I Sbjct: 20 RFARGEAMVMFSAGMD---RVLWANGAGANLFGYD----IIYDFLDQGPKAGDVSFRQIE 72 Query: 135 DLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + +T L + ++ A I + E I+ + V P Sbjct: 73 ATARGLGAVGDQRTFLIRMASGFQRAVVNAAVEIIRVQAGE------EAILFSSPVSVKP 126 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 A + + + + + ++ I + + LT + Sbjct: 127 MAAAESAKRMIDGFDDPDTHMAVIGRDGDVIAASTGFEALGVTPHTAKMLTTMAGALPER 186 Query: 254 LKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 L P L + L E H + + + T ++ ++ Sbjct: 187 LIKRPIPTGRGYLPAAVGKLSEIPALHLLFVVETVLGHLDPTESPDAPAPPAAITKVEPE 246 Query: 310 SLSAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + A + + T D P+ ++ A + D Sbjct: 247 AEEARNELEAAVVEPTFAPDTAPVANAASPSADVLDAVAGIEEVEDTPEDDA----AIRE 302 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFP 425 + + + + + + I A+A + + + + A+ P E P Sbjct: 303 AISVQSDAASEDLGQLATMDGASEEQIDAAAYVDELTDEADDMVAPAVVESPVEHEEISP 362 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E D K + + I+ EG +R ++ Sbjct: 363 EPAAPEHDAVADGQPGEFTFKRNGRATRF----------VWKIDAEGRFSEVSREFAEAV 412 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G + FT + + E+L+ + I ++ + + Sbjct: 413 GPHAAKVTGTAFTDVAAHFNLDP-DGKIAELLARRDTWSGRTIYWPVENTSLIVPVDLAA 471 Query: 546 KKLPFSSCYSLTMH 559 S Sbjct: 472 LPTYTRSRDFDGFR 485 >gi|75675205|ref|YP_317626.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420075|gb|ABA04274.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 1005 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 215/815 (26%), Positives = 379/815 (46%), Gaps = 51/815 (6%) Query: 25 LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESV-SNTNYLDSENTFVFDPIPRTV 83 L K D + + E +S Q+ T ++V S + ++ + Sbjct: 216 LKKNVPDRSPDQAQPLAEPE-PESPLQNAETVLPAQAVRSPPEPGNRPSSAPPARRRHPL 274 Query: 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 RF W +DA G S+E +TIG G ++SD+ +DP + ++ +NTW Sbjct: 275 RFMWRMDAEGRFSIGSDEFTRTIGMRTATGFGRLWSEISDVFGLDPEGRLARAVQTRNTW 334 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G T LWP++G++ + ++L+ LPIY R R F G+RGFG+ R A +R + Sbjct: 335 SGVTLLWPVDGSDARLRVELSGLPIYDRTRNFVGYRGFGVCRD-REGLARLAASRRSEFL 393 Query: 204 FSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 FS + +S+ +K + P + V L + Sbjct: 394 FSETSHPAPVDSANSADDKPSEPLQQPTEPDTTVETPKNVLPFRPPVDLNPPPLTPVENH 453 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L + + + S + E + P A Sbjct: 454 AFNELARQLSARLEGE-PEAARPEDNAEPPVAAGASAITREQADEPSSPEQPAPRRTTVA 512 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + +D P ++ G YAN +FL Y+S++ ++ AGGL LL ++ + + Sbjct: 513 RDSQILDLIPSGVMIHRAGRALYANAAFLAQVGYQSLETLQEAGGLDALLVEARMVEADP 572 Query: 381 IK--------------PVMLYRSDRT---CIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 ++ PV + + + +ARL + W+ E + A+ ++ Sbjct: 573 VEAALPDAVGTPPTGSPVTVSVTPPSGAPQQPLAARLFAVSWDGEPAHALICGGASAPSR 632 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 +L +I++ ++G+ + + G I + N + Sbjct: 633 VGH----------------------ATAEELATIVDGAAEGLLMFDDGGNITACNHSAET 670 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLR 542 LFG P + + ++ + + YL + D Q + +G E+ L+ L Sbjct: 671 LFGLPGDTLTQRNLVDLFAPESQDAVRDYLKSLTDDDANQLDHGREVVGRMGEDGLIPLS 730 Query: 543 IIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + + + D+S+ K+ + +LS A++ AE+ ++ K+D LAR+SHEIRTPL Sbjct: 731 MTMGRTQAAGPNFFAAFRDLSQSKKTETELSQARRQAERAANAKADVLARISHEIRTPLN 790 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +IIGF+EV+ +++FG LGN RY+EY I SG ++ ++DLLD+S+IE+GK++L F Sbjct: 791 SIIGFAEVMIDEKFGSLGNERYVEYMKDIRASGERIISFIDDLLDLSRIETGKLDLAFVN 850 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 +L++ V + ++++Q AN +RI+IRTS A+ +P I+AD ++++QI LN++ N+IH + Sbjct: 851 QNLNDIVEQCVAVMQPQANRERIIIRTSLAHTLPAIVADAQALRQITLNLIGNSIHLANA 910 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GGQ+I+ST +V LRVRD+G ++ EL A +PF + P + G+ L L Sbjct: 911 GGQVIVSTAVNDFGDVALRVRDSGHSLSEDELAAATEPF-RTPPPSDQASKSAGVSLSLT 969 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 KA+V+AN +F+I + P GTLIE++F S P Sbjct: 970 KALVEANRAQFHIKTGPHSGTLIEVVF--AQASAP 1002 Score = 41.2 bits (95), Expect = 0.70, Method: Composition-based stats. Identities = 21/216 (9%), Positives = 48/216 (22%), Gaps = 23/216 (10%) Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 L P + + +ANP + + + L D Sbjct: 17 DPRLAVHAASAMPAWLWSLDGARILWANPVGVSIVGATDASALASRTF--------NLDD 68 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L + A L + EP Sbjct: 69 PRRRQVAQLASRLPSSGAVRLERMRGYAGLGRLLTCACSRL-DFPGVGSAILVRAAEPAG 127 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV------ED 491 + V +L ++ +A + +G ++ + LFG + Sbjct: 128 RGITL--------VERLQQLVAGVDAPVAAFSHDGRFVAASIKGRSLFGIGSLSEGGLDS 179 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + + + + + L + S + Sbjct: 180 LRDQALREGRAETSIGLWRLVLQRVGSGGDIGLVAF 215 >gi|85716111|ref|ZP_01047087.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697110|gb|EAQ34992.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 978 Score = 551 bits (1421), Expect = e-154, Method: Composition-based stats. Identities = 215/795 (27%), Positives = 365/795 (45%), Gaps = 50/795 (6%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYL 95 + P + ++ T +V D P +RF W +DA G Sbjct: 215 PAGLTEPEAELPLPNSATVSPMRAVGPRPEPDHRP-LRDSPLRRRHPLRFMWRMDAEGRF 273 Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155 S+E + IG + G ++++I DP + ++ + TW G + LWP +G+ Sbjct: 274 SFGSDEFTRIIGMRTTSVFGRLWSEITEIFGFDPEGRVAKAVETRETWSGISLLWPADGS 333 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH---LHEIKK 212 + + ++L+ LP+Y R R F G+RGFG+ R A +R D FS Sbjct: 334 DTGLRVELSGLPVYDRARNFVGYRGFGVCRD-REGLARLAANRRNDFLFSETSHPAPANP 392 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 S+ + + P + V PL E ++ E Sbjct: 393 ATSADARPSEPLQQPAEPDTTVETPKNVLPFRPPV-------DLNPPPLTPVENNAFNEL 445 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPI 331 + L E S + + + + D P Sbjct: 446 ARQLSARLEGEADDAAAPGTDAEQPGVSEPPDASREQSATEPTPQATLASDNLICDLLPS 505 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP----VMLY 387 +Y G + YANP+FL Y S ++ AGGL LL + D P V + Sbjct: 506 GVMIYRAGRVLYANPAFLAQVGYGSFQALQEAGGLDALLVQADMPDAVNTPPTGSHVTVS 565 Query: 388 RSDRT---CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + +ARL + W+ E + A+ ++ Sbjct: 566 ATPPSGAPQQPITARLFEVSWDGEPANALICGGTSAPSRIGH------------------ 607 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +L +I++ ++GI + + G I + NR+ LFG+ +++ + Sbjct: 608 ----ANAEELATIVDIAAEGILMFDDGGRITACNRSAETLFGHSGDNLTQHNLVDLFAPE 663 Query: 505 TPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDI 561 + + YL ++ D L+ + LG +E+ L+ L +I+ + + D+ Sbjct: 664 SQGAVRDYLKSLMHDDDASLLDHGREVLGRAREDGLIPLSMIMGRTQAEGPNFFAVFRDL 723 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ K+ + +LS A++ AE+ ++ K+D LAR+SHEIR PL +IIGF+EV+ +++FG LGN Sbjct: 724 SQSKKAETELSQARRQAERAANAKADVLARISHEIRAPLNSIIGFAEVMIDEKFGSLGNE 783 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 RY+EY I SG ++ ++DLLD+S+IE+GK++L F +L+E V + ++++Q AN Sbjct: 784 RYVEYMKDIRASGERIIAFIDDLLDLSRIETGKLDLAFVNQNLNEIVEQCVAVMQPQANR 843 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 +RI+IRTS A+ +P ++AD ++++QI LN++ N+IH +GGQ+I+ST T +V LRV Sbjct: 844 ERIIIRTSLAHTLPPVVADAQALRQITLNLIGNSIHLANAGGQVIVSTAITDFGDVALRV 903 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG G++ EL A +PF + P + G+ L L KA+V+AN +F+I + P G Sbjct: 904 RDTGQGLSENELAAATEPF-RTPAPSDQASKSAGVSLSLTKALVEANRAQFHIKTGPHSG 962 Query: 802 TLIEIIFPLYDTSHP 816 TLIE++F T P Sbjct: 963 TLIEVVF--AQTDAP 975 >gi|92116807|ref|YP_576536.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799701|gb|ABE62076.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 1031 Score = 538 bits (1386), Expect = e-150, Method: Composition-based stats. Identities = 209/819 (25%), Positives = 350/819 (42%), Gaps = 86/819 (10%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 V + D + P +RF W +DA G S+E + IG Sbjct: 228 QAVGSAGHPVVEGLSEPDDTPSPDHSPQMRRHPLRFMWRMDAEGRFSLGSDEFTRVIGTR 287 Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 G +++++ +DP+ + + ++TW G T LWP++G+ +P++L+ LPI+ Sbjct: 288 TAAGFGRLWSEITEVFGLDPDGRVAKAVATRDTWSGITLLWPVDGSGARLPVELSGLPIF 347 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----DIF 225 R F+G+RGFG+ R A +R + FS +S + D Sbjct: 348 DLARNFAGYRGFGVCRD-REGLARIAAHRRHEFLFSETSHPLPASTSTSPDAALAAPDSL 406 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH---TINLNQ 282 P + V K L + L + + Sbjct: 407 QPAEPDTVVETPKNVLPFRSPTDLKPPSLTPVENNAFNELARQLSARLESEPDTAAPDAV 466 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE------------------ 324 + S+ + Sbjct: 467 AEQPVAPEPPPPPEPPPQPPDVTGPQADGSSLSEPAPQAGSAGDSLDHDDFGSNRSKIMN 526 Query: 325 -------------------------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 +D P +Y + Y NP+FL Y + Sbjct: 527 VIDSNIILERDAGGKPLHTFPHPALVLDLLPTGVMIYRLDRVLYVNPAFLAQVGYDGLLA 586 Query: 360 IEIAGGLSTLLDAPKLSDNNAI----KPVMLYRSDRT---CIAASARLHTIQWNRENSLA 412 +E AGGL LL + ++ PV + + + +A L I W+ E + A Sbjct: 587 LEQAGGLDALLVESGMPAADSTPATGSPVTISATPPSGPPQQPIAAHLFVIAWDGEPAHA 646 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + +L +IL+ T++GI + + G Sbjct: 647 LICAGASAPSPVGH----------------------ATAEELGAILDTTAEGILMFDDGG 684 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITL 530 I + NR+ LFG+ + + + + + YL I+ + L+ + L Sbjct: 685 RITACNRSAEALFGHSGDSLTQFNLADLFAPESEGAVRDYLNGIVGNGVASLLDHGREVL 744 Query: 531 GSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 G +E L+ L + + + + D+S+ K+ + +LS A++ A++ ++ K+D L Sbjct: 745 GRVREGGLIPLSMTMGRTQADGPNFFAVFRDLSQAKKIETELSQARRQADRAANAKADVL 804 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 AR+SHEIRTPL AIIGF+EV+ +++FG LGN RY+EY I SG ++ ++DLLD+S+ Sbjct: 805 ARISHEIRTPLNAIIGFAEVMTDEKFGALGNERYVEYMKDIRASGERIIAFIDDLLDLSR 864 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IE+GK++L F +L+E V + ++++Q AN +RI+IRTS A+ +P I+AD +++QIAL Sbjct: 865 IETGKLDLAFVNQNLNELVEQCVAVMQPQANRERIIIRTSLAHTLPPIVADAHALRQIAL 924 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++ N+IH +GGQ+I+ST +V LRVRDTG G+ EL A +PF + P Sbjct: 925 NLIGNSIHLANAGGQVIVSTALNDFGDVALRVRDTGHGLNENELAAATEPF-RTPAPSDQ 983 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E G+ L L KA+V+AN +F I + P GTLIE++F Sbjct: 984 ASESAGVSLSLTKALVEANRAQFNIRTGPHSGTLIEVVF 1022 Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 43/173 (24%), Gaps = 16/173 (9%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 L P + + +ANP+ + + + D Sbjct: 12 ADPRLAVHAASALPAWLWSLDGARILWANPAGVSVFGAVHAPALASQN-----FDPADPH 66 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + T RL ++ + + N + E Sbjct: 67 RRQVAQIAGRLPPTGT-----VRLERLRGFGAPLGRLIICACARLNFSDGSSGILITATE 121 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + V +L +++ IA+ +G+++ A L G+ Sbjct: 122 PTGRAMPL------VERLQRLMDGVDTPIAVFTLDGLLVGAGDAARPLLGFRS 168 >gi|192292979|ref|YP_001993584.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192286728|gb|ACF03109.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 1191 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 223/781 (28%), Positives = 369/781 (47%), Gaps = 27/781 (3%) Query: 44 PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103 P + +++ ++ P +RF W ID G L S+E Sbjct: 415 PALVEQSAAPEPAAPEQAATDAAPAVETAPEPPAPRRHPLRFVWQIDLAGRLAIASDEFL 474 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 + IG + +G R +V+D L +DP + L ++TW G T WP +G L +PI++ Sbjct: 475 RLIGPHTAANLGERWAEVADRLGLDPQGLVAAALATRHTWSGITLQWPADGAALRLPIEM 534 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + LP+ + F+G+RGFG+ + AL + + + + Sbjct: 535 SGLPVQDQGGAFAGYRGFGVCRDLAALDYLAALRRHGPNEPLRPQPLSADRAPNSPASD- 593 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + P L + + L E S+ E L Sbjct: 594 --QAAALDPLLNPLDTPVDTPKNVLPFRAANDARAPSLTPGENSAFHELAQQLAARLASE 651 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------EGENLTPETVDKCPIPFFV 335 T + + + E + + D +D P+ + Sbjct: 652 TPPTADAPSIADDEVAPEQDAATTDTPEAPRADWLAPTPASGASARDRLLLDLMPVGVLI 711 Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN----NAIKPVMLYRSDR 391 Y L YANP+FL + SV +E AGGL L + D+ P+ + + Sbjct: 712 YRLDRLLYANPAFLARMGFASVAALEDAGGLDALYVDSGVGDSSSSSETGTPITITAAQG 771 Query: 392 T-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 ARL TI W+ + +LA+ P PE ED + E Sbjct: 772 GDAAPTEARLFTIAWDGDQALALICSPAPAPTAVPELPFAPTTAIEDAPAVVGAANAE-- 829 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +L +IL+ T++G+ + + G I + NR+ LFGY + +++ + + + Sbjct: 830 --ELGAILDTTAEGVLMFDEAGQISAANRSAEALFGYDGDALVQHNLIELFAPESRTAVL 887 Query: 511 HYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQE 567 YL I S + L+ LG +E L L + I + + D+S+ ++ Sbjct: 888 DYLDSIKSGRAQSVLDHGLEALGQVREGGLFPLSMTIGRTRTDGPNFFAVFRDLSQLQRT 947 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +LS AK++AE+ + K+D LAR+SHEIR PL AIIGF+EV+ +RFGPLGN RY++Y Sbjct: 948 ETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGPLGNERYVDYM 1007 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I SG V+ IV+DLLD+S+IE+GK++L F ++L+E V ++++++Q AN +RI+IR Sbjct: 1008 KDIRASGERVIGIVDDLLDLSRIETGKLDLAFASINLNELVEQSVAVMQPRANRERIIIR 1067 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 TS A+++P ++AD ++++QI +N++S +IH + GQ+I+ST + EV+LRVRDTG Sbjct: 1068 TSLAHSLPTVVADAQALRQIIMNLISTSIHLANAAGQVIVSTALSDAGEVVLRVRDTGSR 1127 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + EL A++PF + P+ + G+ L L KA+V+AN F+I S P GTLIE++ Sbjct: 1128 LNDDELAAALQPF-RTPSDRTEAA---GVSLSLTKALVEANRATFHIKSAPQSGTLIEVV 1183 Query: 808 F 808 F Sbjct: 1184 F 1184 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 16/172 (9%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + L P + + +ANP L + ++ Sbjct: 12 DDPRLAVHATRTLPAWLWSTDGSRVLWANPVAARLFDAANATELAGRN-----FRPADPH 66 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + RL ++ A+ K + E Sbjct: 67 RRQVAQLAAKLPPNGAT-----RLERLRGFGAPLGALVTCACTKLGFADGSAGILIAAAE 121 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + +L ++E IA +G+ + ++ A L G+ Sbjct: 122 SIGRPMPL------IDRLRGLVEGVDTPIAAFASDGLFVGSSAAARTLLGFR 167 >gi|27382507|ref|NP_774036.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27355679|dbj|BAC52661.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 1171 Score = 528 bits (1361), Expect = e-147, Method: Composition-based stats. Identities = 226/844 (26%), Positives = 376/844 (44%), Gaps = 79/844 (9%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD--SENTFVFDPIPRTVRFTWNIDAH 92 E+ + + P S+ Q + T ++ S T + P +RF W +D Sbjct: 330 ESAEEPADAPKTPVENHSSAIVSPQAAPITTGMVEPPSGPTEMPAPHQHPLRFLWQMDTE 389 Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G S E + +G + G +++ +DP + L +TW G T WP Sbjct: 390 GRFVLASCEFIRLMGAHTAAGFGRPWREIAAEFSLDPEGRVAQALASHDTWAGITVNWPA 449 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G ++P++LA LP+Y R F+GF+GFG+ N AL +R + + Sbjct: 450 DG-GEHLPVELAGLPVYDHARNFAGFKGFGVCRDLDGLNRLDAL-RRFELLAEPPAQHGL 507 Query: 213 GHSSVEKEKYDIF-------------------------------SQQSPPPHLRMKNKVS 241 VE + + P + V Sbjct: 508 SADIVEPDPEPVAEAPPPPAEPPAPEPEPTPEPELPDPALDANSHPTDPETPVETPPNVV 567 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + + L E S+ E + L + + T + ++ + E Sbjct: 568 PFRPPSDTRSPGDQRSPT-LTPIENSAFNELARQLSERLERERETIATATTEPPAESTPE 626 Query: 302 YLSHRNHPSLSAYFDEGEN------LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 L H + +D P +Y L YANP+FL + Sbjct: 627 PLIEAPHAPAEWLTEPAPPARGHSMRDRALLDLLPTGILIYRLDRLLYANPAFLARMGHA 686 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKP--------VMLYRSDRTCIAASARLHTIQWNR 407 SV +E AGGL L P +S ++ L + A LHTI W+ Sbjct: 687 SVSALENAGGLDALYVEPGVSPASSTSQGGTPVTISATLPNGEEPLPTTEAHLHTIDWDG 746 Query: 408 ENSLAMTF-------IPFEKANQFPENMPQNGIEPEDVDTRINKR-----KMEIEV---- 451 E++ A+ + A P EP + + + ++E + Sbjct: 747 ESAHALVCALPAAAPVVTAPAVAEPVAALSVAAEPVVTEPLVAESFPYASELESQAGDAD 806 Query: 452 -MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L +IL+ T++GI + + EG IL NR+ LFGY E +L + + ++ Sbjct: 807 AEDLAAILDTTAEGIVMFDAEGNILVCNRSAEALFGYDGEALLEQNLVSLFAPESQQIVA 866 Query: 511 HYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQE 567 YL + S D+ L+ + LG K+ ++ L +I+ + + D+S+ K+ Sbjct: 867 DYLESLKSQDISSLLDHGREVLGREKKGGVIPLAMIMGRTRPDGPNFFAVFRDLSQSKKG 926 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +++L+ A+++ + ++ K+D LAR+SHEIRTPL AIIGF+EV+ ++RFG LGN RY EY Sbjct: 927 ESELTQARRLVDGAANAKADMLARISHEIRTPLNAIIGFAEVMISERFGTLGNERYGEYM 986 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I SG V+ I++DLL++S+IE+GK++L+F ++L++ V + ++Q AN +RI+IR Sbjct: 987 KDIRASGERVIAIIDDLLELSRIETGKLDLNFANLNLNDLVEACVVVMQPQANRERIIIR 1046 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 TS + +P++ D R+++QI +N++SN+I +GGQ+I+ST EV LR+RDTG G Sbjct: 1047 TSLGHALPQVSVDARAMRQITMNLISNSIRLASAGGQVIVSTALNDRGEVALRIRDTGHG 1106 Query: 748 MTNYELEKAMKPFGQ---IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 ++ E+ AM+PF L L L KA+V+AN +F I S GTLI Sbjct: 1107 LSEREVAAAMEPFRTPPPGDAEDNSA-----LSLSLTKALVEANRARFNIKSA-GHGTLI 1160 Query: 805 EIIF 808 E++F Sbjct: 1161 EVVF 1164 Score = 41.2 bits (95), Expect = 0.76, Method: Composition-based stats. Identities = 14/160 (8%), Positives = 35/160 (21%), Gaps = 16/160 (10%) Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 P + + +ANP + + Sbjct: 33 LPAWLWSVDGARVLWANPVGAKFFGAAHAAVL-----AEKTFGPADSHRRQVARLARQLP 87 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + T RL ++ + + E + Sbjct: 88 ASGT-----VRLERLRGFGARLGTLMTCACTRLTFADGGQAVLVTAMEPSVRTMPL---- 138 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + +L ++ +A +G+ + + A L G+ Sbjct: 139 --IERLHRLVAGAKMPMAAFAPDGMFVGASEAARALLGFR 176 >gi|90425417|ref|YP_533787.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90107431|gb|ABD89468.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 1188 Score = 525 bits (1353), Expect = e-146, Method: Composition-based stats. Identities = 224/786 (28%), Positives = 363/786 (46%), Gaps = 55/786 (6%) Query: 75 VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134 P +RFTW +DA G +S+E + IG G +++ + +DP+ H Sbjct: 399 PLPPRRHPLRFTWQLDAEGRFSIVSDEFSRLIGPRTAAGFGRLWHEIAALFGLDPDRHFA 458 Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + +NT+ G WP++G + + ++++ LP+ R+ F G+RGFG+ N Sbjct: 459 AAIATRNTFSGIMLNWPVDGPDQRLAVEMSGLPVQDRDGNFRGYRGFGVCRDLAGLN-RL 517 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVE---------------------KEKYDIFSQQSPPPH 233 A +R D + G + V+ D+ S P P Sbjct: 518 ADARRNDDDTLPAQPLSAGIAPVDASFAAASVSASEPNGTDLSDQPSPADMSSPTDPEPA 577 Query: 234 LRMKNKVSS-----------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 + V LT + + L + L SE L + + Sbjct: 578 VDTPKNVLPFRQTNDPRSPALTPVENNAFNELARQLSARLESEAPDLIAEPAASQPDAPS 637 Query: 283 YTKKQYFGTLQNNSKE--------SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + S+E + E + ++ P+ Sbjct: 638 RPDPTAPDSREPESREPQAAQSETAGEPSEPSAAAPATQPARGEALRDTLLLELLPVGVL 697 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI---------KPVM 385 +Y L YAN +FL T + SV ++ AGGL L +++ Sbjct: 698 IYRLDRLLYANRAFLERTGFASVAALDDAGGLDVLYVESGADGSSSNSDDGAPITITAAQ 757 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + A RL TI W+ E +LA+ F P D + Sbjct: 758 RAADQPSSQPAEGRLFTISWDGEPALALIFSETAAETAMAAEAEPFAEAPAI-DPDLPSA 816 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 +L +IL+ T++GI + + EG + NR+ LFGYP ++++++ + Sbjct: 817 VGAANAEELGAILDTTAEGIVMFDAEGQLHVCNRSAEALFGYPGDNLVQRNLIELFAPES 876 Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDIS 562 V+ Y+ I S L+ + LG +E L+ L II + Y D+S Sbjct: 877 QRVLLDYIEAIKSDGAASLLDPGREVLGRVREGGLIPLSAIIGRTRHDGPNYFAVFRDLS 936 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K+ +++L A++ AE+ ++ K+D LAR+SHEIRTPL AI+GF+EV+ +RFG LGN R Sbjct: 937 QAKKTESELIQARRQAERAANAKADVLARLSHEIRTPLNAILGFTEVMIEERFGALGNER 996 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y+EY I SG V+ IV+DLLD+S+IE+GK+ L F P L+E V + + ++Q AN + Sbjct: 997 YVEYMKDIRASGERVIAIVSDLLDLSRIETGKLELAFAPQHLNELVEQCVGVMQPQANRE 1056 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 RI+IRTS A+ +P ++AD ++++QI LN++ +IH +GGQ+I+ST + +V+LRVR Sbjct: 1057 RIIIRTSLAHQLPNVVADAQALRQITLNLIGTSIHLANAGGQVIVSTALSDFGDVMLRVR 1116 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG + +EL AM+PF P S G+ L L KA+V+AN +F+I + P GT Sbjct: 1117 DTGSRLNEHELAAAMEPFRTAPPSDHSSEA-PGVSLSLTKALVEANRAQFHIKTAPHSGT 1175 Query: 803 LIEIIF 808 LIE+IF Sbjct: 1176 LIEVIF 1181 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 44/489 (8%), Positives = 106/489 (21%), Gaps = 40/489 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W ID + + + G +G + DP+ L + G Sbjct: 28 LWAIDGT-RIVWANPVGARLFGAPNGAALGTK-----SFGLADPHRRQVAQLAGRLPPSG 81 Query: 146 KTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 T L + G + + + + G + R L + ++ Sbjct: 82 ATRLERLRGFGAPLGALVTCGCARLEFADGS-HGVLVVAAEPIGRAMPLVERLQRLVEGI 140 Query: 204 FSHLHEIKKGHSSVE--------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + + + + E ++ R + + Sbjct: 141 ETPIATFARDGLFIGASDAARALLGFRNLAEAGLETARHDALTLGRAEMPIGIGRMVLQR 200 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-----TKKQYFGTLQNNSKESFEYLS 304 LL + Q H ++ L + Sbjct: 201 VGAGADVGLVALLVPGATEQAAQPRSHPSAADEAQQVSQPDAPQHPDLAKEPPPEPSQPA 260 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 + + T D P + P+ + Sbjct: 261 EPTEAAAEPAEPPPSVGSEATADLAADPLSDHEAPATTPEAPAEFSPLDDAAAPAEPSPA 320 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 S L + + A+ + + A L + A P + + Sbjct: 321 APSADLISAETPAEPALSWNDAAPVEASAEPVDAALDPAATDD--LAAEHAKPATPSPEP 378 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 P P + + + + L ++ EG + S+L Sbjct: 379 PAAAPTATADADVALPWFAEP-LPPRRHPLRFT--------WQLDAEGRFSIVSDEFSRL 429 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G + + H+ I + + + +++ L++ + Sbjct: 430 IGPRTAAGFGRLWHEIAALFGLDPDRHFAAAIATRNTFSGIMLNWPVDGPDQR-LAVEMS 488 Query: 545 IKKLPFSSC 553 + Sbjct: 489 GLPVQDRDG 497 Score = 44.6 bits (104), Expect = 0.067, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 16/172 (9%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + L P + + +ANP L + + L+ Sbjct: 12 DDPRLAIHATSSLPAWLWAIDGTRIVWANPVGARLFGAPNGAALGTKSF--------GLA 63 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D + + L A RL ++ A+ + + + E Sbjct: 64 DPHRRQVAQLAGRLPPSGA--TRLERLRGFGAPLGALVTCGCARLEFADGSHGVLVVAAE 121 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + V +L ++E IA R+G+ + + A L G+ Sbjct: 122 PIGRAMPL------VERLQRLVEGIETPIATFARDGLFIGASDAARALLGFR 167 >gi|316935647|ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315603361|gb|ADU45896.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1195 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 225/791 (28%), Positives = 375/791 (47%), Gaps = 24/791 (3%) Query: 36 TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHG 93 EN + EQS + S T + +T P PR +RF W ID G Sbjct: 404 ASPQAAENEHRPATEQSAAPEPAAAEPSATEAPSAVDTMPEPPAPRRHPLRFVWQIDRDG 463 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 L S+E + IG + +G R + + L +DP++ + L ++TW G T WP + Sbjct: 464 RLAIASDEFLRLIGPHTAANLGERWSEAAVRLGLDPDHRVTAALATRHTWSGITLQWPAD 523 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 GT L +PI+++ LP+ + F+G+RGFG+ + AL + + S + Sbjct: 524 GTALRLPIEMSGLPVQDQGGAFAGYRGFGVCRDLAALDQLAALRRHAPHEPSPRPQPLSA 583 Query: 214 HSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + D P P + ++ + D + ++ + Sbjct: 584 DRTSHDDASDQAPALDPLLNPLDTPVDTPKNVLPFRPANDTRAPSLTPGENSAFHELAQQ 643 Query: 272 QEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--T 325 ++ L+ S + + Sbjct: 644 LAARLASETPPTSEAPSIVDDETALEPEMAPSQVPDAPSADRVAPTPSPASGAGARDRLL 703 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN----NAI 381 +D P+ +Y L YAN +FL + SV +E AGGL L + D+ Sbjct: 704 LDLMPVGVLIYRLDRLLYANSAFLARMGFPSVAALEEAGGLDALYVDSGVGDSSSSSETG 763 Query: 382 KPVMLYRSDRT-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 P+ + + ARL TI W+ + +LA+ PE ED + Sbjct: 764 TPITITAAQGGDAAPTEARLFTIAWDGDQALALICSAATAPIAVPELPFAPTTAIEDAPS 823 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + E +L +IL+ T++G+ + + G I + NR+ LFG+ + ++ Sbjct: 824 AVGAANAE----ELGAILDTTAEGVLMFDEAGQISAANRSAEALFGHDGDALVAHNLIEL 879 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSC-YSLT 557 + + + YL I S + L+ LG +E L L + I + + Sbjct: 880 FAPESRAAVLDYLDSIKSGRAQSVLDHGLEALGQVREGGLFPLSMTIGRTRADGPNFFAV 939 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D+S+ ++ + +LS A+++AE+ + K+D LAR+SHEIR PL AIIGF+EV+ +RFGP Sbjct: 940 FRDLSQVQRTETELSQARRLAERAAGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 999 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LGN RY++Y I SG V+ IV+DLLD+S+IE+GK++L F V+L+E V ++++++Q Sbjct: 1000 LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASVNLNELVEQSVAVMQP 1059 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 AN +RI+IRTS A+ +P ++AD ++++QI +N++ +IH +GGQ+I+ST + EV Sbjct: 1060 RANRERIIIRTSLAHLLPAVVADAQALRQIIMNLIGTSIHLANAGGQVIVSTALSDVGEV 1119 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +LR+RDTG + + EL A++PF + R E G+ L L KA+V+AN F+I S Sbjct: 1120 MLRIRDTGSRLNDDELAAALQPFRT--PAPSDRTEAAGVSLSLTKALVEANRATFHIKSA 1177 Query: 798 PAKGTLIEIIF 808 P GTLIE++F Sbjct: 1178 PQSGTLIEVVF 1188 Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 16/172 (9%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + L P + + +ANP L + ++ Sbjct: 12 DDPRLAVHATRTLPAWLWSIDGSRVLWANPVAARLFGAANASELAG-----RSFRPADPH 66 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + RL ++ A+ + + E Sbjct: 67 RRQVAQLAVKLPPNGAT-----RLERLRGFGAPLGALVTCACTRLGFADGSAGVLVAATE 121 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + +L ++E IA +G+ + ++ A L G+ Sbjct: 122 SIGRPMPL------IDRLRGLVEGVDTPIAAFASDGLFVGSSAAARTLLGFR 167 >gi|91975926|ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palustris BisB5] gi|91682382|gb|ABE38684.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 1201 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 211/809 (26%), Positives = 369/809 (45%), Gaps = 42/809 (5%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQE--SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92 E E + + +P + + + +V + P +RF W +D+ Sbjct: 393 EAEPTAEHHPLDVPSQDDSELAEPAMILAVEPEPSSELAAYEPLPPRRHPLRFVWQLDSD 452 Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 S+E + G G ++ L +DP++ + ++TW G T WP Sbjct: 453 SRFTVRSDEFIRLAGPRTIAHFGQPWTEIRAALDLDPDDSFAQAIATRHTWSGITLQWPA 512 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------LDKK 203 +G + +P++++ LP+ R+ F+G+RGFG+ + A +R Sbjct: 513 DGASRRLPVEMSGLPVQDRDGNFTGYRGFGVCRDLDGLDQLAARRQRGGTDEHPPRSLSA 572 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 S + + E D QQ + V + + L + Sbjct: 573 DSTPRDTTLVGDATETAATDASYQQQSDIIVDTPRNVLPFRPIHDVRSPALTPVENSAFN 632 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-------------- 309 L E+ + N + + ++ ++ P Sbjct: 633 ELARQLSERLESDAANAAERLFAEAPTDAPQDTIVEQPPKANEAAPSDTTTPLEQPATPK 692 Query: 310 -----SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 L+ +D P+ +Y L YAN +FL + ++ +E AG Sbjct: 693 ADWLAPLATPAKGDSARDRVLLDLMPVGVLIYRLDRLIYANTAFLQRMGFATLSALEEAG 752 Query: 365 GLSTLLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 GL TL ++ +++ + + + RLH I+W+ + +LA+ F + Sbjct: 753 GLDTLYVEEGVTGSSSTSESGTPITVTTTQSAPTAGRLHAIEWDGDQALALIFSATAEPI 812 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 E + + E +L +IL+ T++GI + + +G I + NR+ Sbjct: 813 AEVGAATPIAPEIN-APSDVGHANAE----ELGAILDTTAEGILMFDADGRISACNRSAE 867 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLS 540 LFGY +D++++ + + Y + + L+ LG +E LL Sbjct: 868 ALFGYDGDDLVQRNIAELFAPESNGAVLDYFDSVKAGSAESLLDHGLEALGRVREGGLLP 927 Query: 541 LRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L + I + P + D+S+ ++ + +L+ +K+AE+ + K+D LAR+SHEIRTP Sbjct: 928 LTMTIGRTQPDGPNFFAVFRDLSQARKIETELNQVRKLAERAAGAKADVLARLSHEIRTP 987 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AIIGF+EV+ +RFG LGN RY EY I SG V+ IV+DLLD+S+IE+GK+ L F Sbjct: 988 LNAIIGFAEVMIEERFGALGNDRYGEYMKDIRASGERVIGIVSDLLDLSQIETGKLELSF 1047 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 +L+E V + ++++Q AN +RI+IRTS A+ +P ++AD ++++QI +N++ +IH Sbjct: 1048 TSQNLNEMVEQCVAVMQPRANRERIIIRTSLAHLLPTVVADPQALRQIVMNLIGTSIHLA 1107 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +GGQ+I+ST + EV+LRVRDTG + E+ A++PF S + +G+ L Sbjct: 1108 NAGGQVIVSTALSDFGEVVLRVRDTGQRLNESEIVAALQPFNTPAPSDRSET--SGVSLS 1165 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L KA+V+AN KF+I S P GTLIE++F Sbjct: 1166 LTKALVEANRAKFHIKSAPQSGTLIEVVF 1194 Score = 44.6 bits (104), Expect = 0.069, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 27/223 (12%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + L P+ + + +ANP L + ++ Sbjct: 12 DDPRLAVHATRALPVWLWSVDGTRVLWANPVGARLFGANNGKELGA-----RTFGPADPH 66 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + RL ++ A+ + + E Sbjct: 67 RRLVAQLAGRLPPNGAT-----RLERLRGFGARLGALVTCACARLDFADGTAGVLIAAAE 121 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + ++ V +L ++E+ IA R+G+ + ++ A L G Sbjct: 122 PIGRPMSL------VDRLRGLVESIDTPIAAFARDGLFIGSSAAARTLLG---------- 165 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 F E L S + + ++ L + Sbjct: 166 FRNLTEAGLDQARADALRNGRS-ETPIGIGRMVLQRVGSGSDV 207 >gi|86748594|ref|YP_485090.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86571622|gb|ABD06179.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1149 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 212/812 (26%), Positives = 360/812 (44%), Gaps = 51/812 (6%) Query: 37 EKSKKENPCHDS-FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95 + + + P ++ T E + + + P +RF W +D Sbjct: 342 QPAPADAPSQQQSEDEEPATILAVELEP---RVAATSVAPSPPRQHPLRFVWQLDGDSRF 398 Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155 S+EL IG G ++ L +DP++ + ++TW G T WP +G+ Sbjct: 399 SVKSDELICLIGPRTAAQFGRSWAEIRAALALDPDDRFAQAIATRHTWSGITLHWPADGS 458 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 +P++++ LP+ R+ F+G+RGFG+ D A+ +R D Sbjct: 459 GDRLPLEMSGLPVQDRDGHFTGYRGFGVCRDLDGL-DRLAMLRRHDGADEPPPRSLSADF 517 Query: 216 SVEKEK----------YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + D Q+ + V + L + Sbjct: 518 TPRDATPAADAEHAPMTDTSDHQASDIIVDTPRNVLPFRPVQDARSPALTPVENSAFNEL 577 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----- 320 L E+ + + Q ++ A DE Sbjct: 578 ARQLAERLESDAAGAAERLFAQAANDQAPDAPADATPAEDTATAEAVASNDEPAAPSEPA 637 Query: 321 -------------------LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 +D P+ +Y L YAN +FL L + S+ +E Sbjct: 638 APKADWLAPLATPAKGDSTRDRVLLDLMPVGVLIYRLDRLLYANAAFLQLMGHASLSALE 697 Query: 362 IAGGLSTLLDAPKLSDNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 GGL L + ++ + + +ARLHTI+W+ + +LA+ F Sbjct: 698 EEGGLDALYVEEGVGGSSGTSEAGTPITVATPYSAPTAARLHTIEWDGDQALALIFDGTA 757 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + EP + + E +L +IL+ T++GI + + G I + NR Sbjct: 758 ERPADVVAAASIAPEPN-APSDVGHANAE----ELGAILDTTAEGILMFDAGGRISACNR 812 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEK 537 + LFGY ++++++ + + Y + S L+ LG +E Sbjct: 813 SAEALFGYDGDELVQRSIAELFAPESNDAVRAYFDSVKSGSAESLLDHGLEALGRVREGG 872 Query: 538 LLSLRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L L + I + P Y D+S+ ++ + +L +K+A++ + K+D LAR+SHEI Sbjct: 873 LFPLTMTIGRTQPDGPNYFAVFRDLSQARRIEVELDQVRKLADRAAGAKADVLARLSHEI 932 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 R PL AIIGF+EV+ +RFG LGN RY +Y I SG V+ IV DLLD+S+IE+GK++ Sbjct: 933 RMPLNAIIGFAEVMIEERFGALGNERYADYLKDIRASGERVIGIVGDLLDLSRIETGKLD 992 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L F +L+E V + ++++Q AN +RI+IR+S A+ +P + AD ++++QI LN++ +I Sbjct: 993 LAFTSQNLNELVEQCVAVMQPRANRERIIIRSSLAHALPSVTADAQALRQIVLNLIGTSI 1052 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 H +GGQ+I+ST + EV+LRVRDTG + + E+ A++PF + R E +G+ Sbjct: 1053 HLANAGGQVIVSTALSDFGEVVLRVRDTGHRLNDSEIAAALQPFST--PAPSERSEASGV 1110 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L L KA+V+AN +F+I S P GTLIE++F Sbjct: 1111 SLSLTKALVEANRAQFHIKSAPQSGTLIEVVF 1142 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 44/504 (8%), Positives = 110/504 (21%), Gaps = 44/504 (8%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 +D V V + W++D + + + +G K +G R+ Sbjct: 11 VDDPRLAVHATGALPV-WLWSVDGT-RVLWANPVGARLLGAEHGKALGARI-----FGPA 63 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVH 185 DP+ + L + G T L + G + + + + G I Sbjct: 64 DPHRRLVMQLAGKLPPNGATRLERLRGFGARLGGLVTCGCARLTFADGS----SGVLI-- 117 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKV 240 +P L ++ L E + + + + Sbjct: 118 ---AAVEPVGQPMPLVERLRGLVEGSDTPIAAFGRDGLFIGSSAAARTLLGFRNLTEAGL 174 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + + S+ + Sbjct: 175 DQARAEALQNGRAETPIGIGRMVLQRVGSGGDIGLVALLEPGEPVATDRTPEVPISQPAA 234 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDD 359 E + E +D + G T D Sbjct: 235 VASDIPIDGPSETVPPESDVPDDEAIDTISEAPAEFTRLGETL-----AEAQTDIPPTQD 289 Query: 360 IEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTF 415 A S L+ S A + + + H + + + A Sbjct: 290 NATADEPSPLVVPVADESPAEADASTHESAATPESLPEDSVAPQPHDAEATDQPAPADAP 349 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + ++ P + +EP T + ++ + ++ + Sbjct: 350 SQQQSEDEEPATILAVELEPRVAATSVAPSPPRQHPLRF----------VWQLDGDSRFS 399 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + + L G + + + + ++ + + + Sbjct: 400 VKSDELICLIGPRTAAQFGRSWAEIRAALALDP-DDRFAQAIATRHTWSGITLHWPADGS 458 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMH 559 L L + + + Sbjct: 459 GDRLPLEMSGLPVQDRDGHFTGYR 482 >gi|115526058|ref|YP_782969.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115520005|gb|ABJ07989.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1184 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 211/761 (27%), Positives = 369/761 (48%), Gaps = 33/761 (4%) Query: 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL 136 +P +RFTW +DA G S+E + IG G +++++ +DP+ + Sbjct: 421 EPRRHPLRFTWQLDAEGRFSIGSDEFSRLIGPRTSAGFGRLWSEIAEVFGLDPDRRFAEA 480 Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + + TW G T LWP++ + + ++++ LP R+ + G+RGFG+ AL Sbjct: 481 IASRRTWSGITLLWPVDVPDQRLRVEMSGLPAQDRDGRYIGYRGFGVCRDLEGLTRLAAL 540 Query: 197 GK------------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + D P ++ + V Sbjct: 541 RRGDTAELPPRPLSADCPPAESVAANPSADIPQPSAAGDFLQPADPESNVETPHNVLPFR 600 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L + L + + + L T + + + ++ Sbjct: 601 PTVDGRSLSLTPVENSAFNELARQLSARLESDALELASDTPSETLADEASAPPSAPSPVN 660 Query: 305 HRNH--PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + A + +D P+ +Y L YAN +FL Y S++ +E Sbjct: 661 EQPDWLAPAIAPARGDSSRDRLLLDLLPVGVLIYRLDRLLYANAAFLARMGYDSLNALEQ 720 Query: 363 AGGLSTLLDAPKLSDNNAIKPV--------MLYRSDRTCIAASARLHTIQWNRENSLAMT 414 AGGL L ++ +++ S+ +A+ RLH+I W+ E ++A+ Sbjct: 721 AGGLDVLFVESEVESSSSSSETGAPITIAPATTGSEPPHRSAAGRLHSISWDTEPAMALI 780 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKME----IEVMQLCSILEATSDGIAIINR 470 F E +Q +G EP+ I + + +L +IL+ T+DG+ + + Sbjct: 781 FSGTEAESQAENQ--ADGHEPDRATPSIAAGEASPVGHVNAEELAAILDTTTDGVVMFDA 838 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KI 528 G + + NR+ LFG +++++K T + + + YL + + D + L+ + Sbjct: 839 GGRLHACNRSAEALFGVNGDELMQKSLTELFAPESQATLAAYLETVKNADAQSLLDHGRD 898 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 LG +L L +II + Y D+S+ ++ + +L+ A+++AE +S K+D Sbjct: 899 LLGLVHNGGMLPLAVIIGRTSADGPNYFAVFRDLSQARKTETELAQARRLAEHSASAKAD 958 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 LAR+SHEIRTPL AI+GF+EV+ +R G LGN RY EY I SG V+ ++NDLLD+ Sbjct: 959 VLARLSHEIRTPLNAILGFAEVMIEERLGALGNERYTEYLKDIRASGERVISVINDLLDL 1018 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S+IE+G+++L F P++L+E V + + ++Q +AN +RI+IRTS A+ +P + AD +++QI Sbjct: 1019 SRIETGQLDLAFAPLNLNEMVEQCVGVMQPHANRERIIIRTSLAHTLPPVSADAAALRQI 1078 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 ALN+++ +I +GGQ+I+ST + + EV+LRVRDTG + + EL AM+PF P+ Sbjct: 1079 ALNLIATSIGLANAGGQVIVSTALSDSGEVMLRVRDTGQRLNDDELAAAMQPFRSAPSDS 1138 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +G+ L L KA+V+AN +F I + P GTLIE+IF Sbjct: 1139 ATEA--SGVSLSLTKALVEANHARFQIKTAPHSGTLIEVIF 1177 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 27/218 (12%) Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 P + + +ANP L +S + S + + ++ Sbjct: 25 PAWLWTLDGARIVWANPVGASLFGARSSAALSAKAFRSA----------DPHRRQIVQLG 74 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + + + RL ++ A+ + + + + + Sbjct: 75 QQLPASGAIRLQRLRGFGAPLGALVTCACSRLDFADGQAGILIVAAAPIGRAMPL----- 129 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + +L ++E IA +G+ + + A L G+ L + Sbjct: 130 -IERLQRLVEGIDTPIASFAPDGLFIGASEAARALIGFRD-----------LTDASLDAA 177 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + +L + + L ++L ++ Sbjct: 178 RKAALQSGRAELPIGIGHMVLQRVGSGADVALVALLAP 215 Score = 41.9 bits (97), Expect = 0.44, Method: Composition-based stats. Identities = 54/435 (12%), Positives = 119/435 (27%), Gaps = 30/435 (6%) Query: 19 KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP 78 +G+T +L + + +S NP D + S D Q + +N N F P Sbjct: 542 RGDTAELPPRPLSADCPPAESVAANPSADIPQPSAAGDFLQPADPESNVETPHNVLPFRP 601 Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 + + E++ +L + + A ++ + P + + + Sbjct: 602 TVDGRSLSLTPVENSAFNELARQLSARLESDALELASDTPSETLADEASAPPSAPSPVNE 661 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + + P G + + L LP+ G I ++R+ A Sbjct: 662 QPDWLA--PAIAPARGDSSRDRLLLDLLPV-----------GVLIYRLDRLLYANAAFLA 708 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 R+ + E G + E S S + ++ H+ + Sbjct: 709 RMGYDSLNALEQAGGLDVLFVESEVESSSSSSETGAPITIAPATTGSEPPHRSAAGRLHS 768 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 T +L F + Q G + + S ++A Sbjct: 769 ISWDTEPAMAL----IFSGTEAESQAENQADGHEPDRATPSIAAGEASPVGHVNAE---- 820 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 +D ++ G L N S L + ++ L+ L + Sbjct: 821 --ELAAILDTTTDGVVMFDAGGRLHACNRSAEALFGVNGDELMQK--SLTELFAPESQAT 876 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A + ++ + L + N M + + + + Sbjct: 877 LAAYLETVKNADAQSLLDHGRDLLGLVHNGG----MLPLAVIIGRTSADGPNYFAVFRDL 932 Query: 438 VDTRINKRKMEIEVM 452 R + ++ Sbjct: 933 SQARKTETELAQARR 947 >gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 874 Score = 505 bits (1300), Expect = e-140, Method: Composition-based stats. Identities = 199/762 (26%), Positives = 330/762 (43%), Gaps = 56/762 (7%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 RFTW + + L +G ++ G+ + L+ Sbjct: 130 DAPTRFTWRTGLDARIGHVDPRLASALGRVPEEIAGLDWQALGAP------GAHRAALE- 182 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 ++ L P + I+L PI G RGFG++ R + Sbjct: 183 GLSFSRLPVLLPTA-RGDALDIELGGAPIRGE-----GMRGFGLIKGRRASPERPVQAPA 236 Query: 200 LDKKFSHLHEIKKGHSSVEK-----------------------------EKYDIFSQQSP 230 + Sbjct: 237 PRPAAPPIVPPVAPPIPPRAAEPPPAPAAPTAPAAAEPTSPVRVTLSLVPSAPNVVPLRG 296 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 ++ L+ + + L + P + Sbjct: 297 NGENGVRASWEGLSNGERNAFREIARALGAKLEGVDDDFPPPAEPAPAEPAAAPAPTASV 356 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + ++ P + +D+ P+ + +L YAN + L Sbjct: 357 AIPPAAELPAAVPPLPPRPEPEGLQRVLSDGERPVLDRLPLAMLAFRGDHLLYANRALLE 416 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 T + + +E AGGL+TL A + + + + L + I ARL + W + Sbjct: 417 WTGHADLAALEAAGGLATLFGAQRAGGDEESRALTLLTATGHGITVEARLMSAPWEGGTA 476 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + + R+ E +L +IL+ +DG+ +I++ Sbjct: 477 MLYVLHRLD-----------AVTDERIRQAELALRQAENAERELRAILDTATDGVVLIDK 525 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KI 528 G ILS N LFG+ D+ + T+ L + YL + S + L + Sbjct: 526 AGTILSMNHPAEALFGFNAGDVQGEAITLLLAPESHRAAIDYLDGLASNGVASVLNDGRE 585 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 +G +E L+ L + + ++ + + DI++WK+ + +L+ AK +AE+ + KSD Sbjct: 586 VIGRVREGGLIPLFMTMGRIGDDPTKFCAVLRDITQWKKAEEELTEAKHLAERANLAKSD 645 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA++SHEIRTPL AIIGFSEV+ +RFG + N RY +Y I SG ++ ++NDLLD+ Sbjct: 646 FLAKISHEIRTPLNAIIGFSEVMMEERFGAIENQRYRDYLRDIHSSGEHLISLINDLLDL 705 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 SKIE+GK++L F V+L+E V + ++++Q AN +RI++R+S A ++P ++AD RS++QI Sbjct: 706 SKIEAGKLDLAFTSVALNEIVQQCMAIMQPQANRERIVVRSSLATDLPPVVADARSIRQI 765 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 LN++SN++ FT GGQ+I+STT T EV+LRVRDTG+GM+ ++ AM+PF QI S Sbjct: 766 VLNLVSNSVKFTQPGGQVILSTTLTEQGEVVLRVRDTGIGMSEADIAIAMEPFRQIATSG 825 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGLPL KA+ +AN F I S GT++EI FP Sbjct: 826 RAGSGGTGLGLPLTKALAEANRASFNIRSAVDVGTIVEITFP 867 >gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella silvestris BL2] Length = 836 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 216/756 (28%), Positives = 334/756 (44%), Gaps = 83/756 (10%) Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 + + + D RF W DA L E+ LP+ IG +++G +L Sbjct: 138 AAPPEAPAEISSVGRPDRGG-PARFLWRTDAEDRLIEVGPRLPEAIGEPKAELLGQKLAR 196 Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 + D + L + + +W G WP+ G + P+ +A P++ R+ GFRG Sbjct: 197 LVAGFDADKGMELARLFEARESWSGLDLAWPVAGEDFIAPVTIAGSPVFDHRRQLLGFRG 256 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 FG++H R P R+ Sbjct: 257 FGLIHPRRA----------------------------------------AAPDSRIPES- 275 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + PL S P+ + + + + L + ++ + Sbjct: 276 ------------KIIVLRSPLEAGAGPSAPQGPEQGADDASISGSRARLADLASRLEQEW 323 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 N +A D N D PI V +G +AN L L Sbjct: 324 PAPPRANPRQSAAEPDPLPNGAKAAFDVLPIGVLVCGNGAALFANRFLLDLLGCADFAS- 382 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + +A + L D + A R+ + Sbjct: 383 ------AKFREAIQPVMTRPASAEYLELRDGSGRAVRLRVARAPLPHGPEWLEAISLAPQ 436 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + ++++ E +L +IL+ +G+A+I+ G I S NR+ Sbjct: 437 PSAARSGAEP------------ELKRLQREARELNAILDTAMEGVAVIDSAGRIKSLNRS 484 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538 LF Y ++ +PFTV + + Y + S + + + LG T++ Sbjct: 485 GEALFCYDKAEVAGEPFTVLVAPESRERALAYFEGLKSNGVAEVFNDGREILGLTRQGGQ 544 Query: 539 LSLRIIIKKLPF------SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + + K+ Y + D++ WK+ + +L A++ AE+ S+ KSDFLA+V Sbjct: 545 IPIFMTLGKIGSSAASGIDQRYCALLRDMTHWKKVERELDDARREAERASALKSDFLAKV 604 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL AIIGF+EVI +RFGP+GN RY +Y I SG+LV+ +VNDLLD+SKIE+ Sbjct: 605 SHEIRTPLNAIIGFAEVIMEERFGPIGNARYKDYLKDIHSSGSLVMSLVNDLLDLSKIEA 664 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 GKM+L FE V + V+E +S++Q A+ R++IR S A +P I AD RSV+QI LN+L Sbjct: 665 GKMDLSFEAVDANRIVTECVSIMQPQASSARVVIRLSLAPQLPHIFADERSVRQIVLNLL 724 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI FT GGQ+I+ST LR+RDTGVGM+ +L+ A++PFGQ + Sbjct: 725 SNAIKFTQGGGQVIVSTALNDENCAALRIRDTGVGMSEGDLKVALEPFGQA--PRARGSG 782 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGLPL KA+V+AN F I S GTL+E+ F Sbjct: 783 GTGLGLPLTKALVEANRASFSIKSKVQDGTLVEVAF 818 >gi|296448146|ref|ZP_06890045.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296254327|gb|EFH01455.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 899 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 212/770 (27%), Positives = 335/770 (43%), Gaps = 43/770 (5%) Query: 42 ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101 + + + S+ R RF W DA G + ++ Sbjct: 163 DPEPPSVPAVEPESAPEPRAGEPAGEPASKPA-------RPERFIWRTDAEGRVVVVTGA 215 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 L +G + G + + L +DP + ++L + +W G WP++G VP+ Sbjct: 216 LADVVGRDNSDIAGRSFVETARRLRLDPRGRLDEVLASRRSWSGVELDWPLQGGGARVPV 275 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 L ALPI+ R F GF+G+G++HV R + + Sbjct: 276 TLGALPIFDDARRFGGFQGYGVLHVGR----------------LRFEPPAAEPAPPAEAP 319 Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 P + KV L A + E + Sbjct: 320 EAAAELPEAAPLVSTGGKVVPLRPQLALPRFEDGAAAAGEPLTASERAAFDEISRALGAG 379 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 T K L ++ P G +D+ P+ V Sbjct: 380 ARTGKGPARELIEAVGQATGCEPPA-WPESDEAEPIGLARARALLDRLPVGVLVARGAQA 438 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASAR 399 YAN + L Y + + GG + L P+L D + + L D + A AR Sbjct: 439 LYANRTLLDYLGYPDLTALAAEGGAARLFVGPRLQDASEGGANVLELRGEDGERLDADAR 498 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L I W+ + +T A E +E E + E+ +L + LE Sbjct: 499 LQAIDWDGGPATLVTLRSARPAAGAAEAARLGALENELARR-------QSEMEELRTTLE 551 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 AT A+++R+G I S + +L G E + +P + + + YL Sbjct: 552 ATGAAYAVLDRDGRIRSASGGFGRLLGEEPEALAGEPLAALFAEADRAAVADYLR----G 607 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 ++ +L++ + + + ++ + L A++ AE Sbjct: 608 REPGADGLRASVRARKG---ALQLTLVGIGAEQRRCAVLRELGPRRGADEALEAARREAE 664 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + ++ K+DFLA+VSHE+RTPL AIIGF+EV+ +RFGPLG+ RY EY I SG VL Sbjct: 665 RANAAKTDFLAKVSHEVRTPLNAIIGFAEVMMEERFGPLGSERYKEYLKDIHTSGLHVLS 724 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +VNDLLD+SKIE+GKM L E + + ++E +S++Q AN R+LIR S +PR+LA Sbjct: 725 LVNDLLDLSKIEAGKMELDVERIDANAMIAECVSIMQPQANRSRVLIRLSLWPRLPRVLA 784 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D RS++QI LN+LSNA+ F +GGQ+I+S+ T V++RV+DTG+GM+ E+E A++P Sbjct: 785 DGRSLRQILLNLLSNAVKFNEAGGQVIVSSALTDAGYVVIRVKDTGIGMSESEIETALEP 844 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q+ + GTGLGLP+ KA+++AN F I S +GTL+E+ FP Sbjct: 845 FRQVGP---HKASGTGLGLPVTKALIEANRASFSITSRRNEGTLVEVAFP 891 >gi|146338328|ref|YP_001203376.1| two-component hybrid sensor and regulator [Bradyrhizobium sp. ORS278] gi|146191134|emb|CAL75139.1| Two-component hybrid sensor and regulator [Bradyrhizobium sp. ORS278] Length = 1151 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 208/827 (25%), Positives = 357/827 (43%), Gaps = 77/827 (9%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 P D+ + + S +RF+W IDA G S+E Sbjct: 330 PPIPDAPDAQTKIAADDASTPG--------------RRHPLRFSWQIDAEGRFSLGSDEF 375 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 + IG + +G +++ L +DP + + + TW +WP + ++ Sbjct: 376 ARLIGPESAGHLGQPWPEIASSLGVDPEGRVSAAIATRETWSNLVVIWPAAA-GERLAVE 434 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK---------------KFSHL 207 L+ LP+++ ++ +SG+RGFG+ N A+ + F Sbjct: 435 LSGLPVFTADKVYSGYRGFGVCRDIDALNRLDAVRRSDAGPSDAPDADDIDDAPPDFVAS 494 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP-------------------------PPHLRMKNKVSS 242 + H+ + +P P ++K+ + Sbjct: 495 RPAQSDHAPAADVPPPQYIVAAPSRDASIAAEAPHIDGVGLEAAGNVVPFRAPGESKLPA 554 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEES-----SLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 LT + L + L E + P E ++ Q + + + Sbjct: 555 LTPVENNAFHELARQLSARLEGEIRNPAELAGPTLEPAARVSDPFGPPHQDASGMTDVAG 614 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 L +D P +Y L YANP+F Y + Sbjct: 615 AQGNGLQTDWLAPEVPPAHGDSQRDRILLDLLPTGMLIYRLDRLLYANPAFFKQMGYADL 674 Query: 358 DDIEIAGGLSTLLDAPKLS----DNNAIKPVMLYRSDR---TCIAASARLHTIQWNRENS 410 +E AGGL L P A PV + +D I A ARL TI W+ + + Sbjct: 675 PTLEQAGGLDALYVEPGAPSGTSRPEAGTPVTISAADGSTSEEIKAEARLFTITWDGDTA 734 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK------RKMEIEVMQLCSILEATSDG 464 A+ F P + + E L +IL+ T++G Sbjct: 735 HALIFAPAPGPAAALPATVETPPVQAPAPSATPLVVAPPPSAGHAEAEDLAAILDVTAEG 794 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I + + G I + NR+ LFGY ++ R+ + ++ YL + Sbjct: 795 ILMFDAGGNIHACNRSAEALFGYDGVELARRNLIELFAPESARLVLDYLDSVQQAGASGA 854 Query: 525 LE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 L+ + LG + + L I I + + D+S+ ++ +++L HA+++A++ Sbjct: 855 LDQGREVLGKIAQGGAIPLSITIGRTRADGPNFFAVFRDLSQLRRGESELLHARRVADRA 914 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 ++ K+D LAR+S E+R PL AIIGF+EV+ +RFG LGN RY EY I SG V+ ++ Sbjct: 915 ANAKADMLARISQEVRAPLNAIIGFAEVMIGERFGTLGNARYAEYMKDIRASGERVVSLI 974 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +DLL++S+IE+GK+ L F +L+E V ++++Q AN RI+IRTS + +P ++AD Sbjct: 975 DDLLELSRIETGKLELAFTAQNLNELVESCVAVMQPQANRARIIIRTSLSQALPPVIADT 1034 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R+++QIA N++S +I +GGQ+I+ST + EV+LRVRDTG + + + A++PF Sbjct: 1035 RALRQIATNLISASISLANAGGQVIVSTAMSDFGEVVLRVRDTGHALNDQAVAAALEPF- 1093 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + +G+GL L L KA+V+AN +F+I + P GTL+E++F Sbjct: 1094 RATAGAEFGADGSGLSLSLTKALVEANRAQFHIKAAPKSGTLMEVVF 1140 Score = 44.6 bits (104), Expect = 0.071, Method: Composition-based stats. Identities = 22/254 (8%), Positives = 60/254 (23%), Gaps = 24/254 (9%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 H L P + + +AN +V + + Sbjct: 2 THADFEMLALSDPRLAVHAAGALPAWLWSSDGSRVLWANAIGARALGATNVPAL-----V 56 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + RL ++ + + + Sbjct: 57 TRTFGPADSHRRQIAQLGRRLPETGAL-----RLERLRGFGAPLGTLATCGCARIDLPDG 111 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + +L ++E + + ++G + A +LFG Sbjct: 112 THGVLIASSDTGGRSLPLA------ERLKRLVEPSEHAMIAFTQDGQFTGISTAGRRLFG 165 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + + + E+ R L + +GS + L+++ + Sbjct: 166 MHDLSDA------CFTAARGAALADGIAEVTLGTERAALHR--IGSGNQTALVAVPLPAL 217 Query: 547 KLPFSSCYSLTMHD 560 + ++ D Sbjct: 218 SDEADAPGPASITD 231 >gi|209884263|ref|YP_002288120.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] gi|209872459|gb|ACI92255.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha carboxidovorans OM5] Length = 1066 Score = 492 bits (1267), Expect = e-136, Method: Composition-based stats. Identities = 221/807 (27%), Positives = 361/807 (44%), Gaps = 55/807 (6%) Query: 42 ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101 + P DS + + S L + +RFTW +DA G S+E Sbjct: 267 DTPMDDSAAPETSSGMAPAAPSELLPLPDDPAVR---RRHPLRFTWAMDAEGRFSLGSDE 323 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 IG + +VS L +DP +H+ + + T+ G WP++G + +P+ Sbjct: 324 FTHLIGVQTTAAFSRKWSEVSTELTLDPEDHVAQAVATRATFSGILLHWPVDGVSGRLPV 383 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 +L+ LP+Y R+R F+G+RGFGI A +R D F + E+ + Sbjct: 384 ELSGLPVYGRDRTFAGYRGFGICRDLDGLT-RLAAQRRRDALFGSTPATAPASQTHEQPE 442 Query: 222 YDIF---------SQQSPPPHLRMKNKVSSLTEYY-------AHKDDVLKTEKYPLLTSE 265 PP H + ++ A+ D + Sbjct: 443 AQEPVAIAEMHEPPAHEPPTHEAEPETIEAIEAPANVVPFRPANDDGPTLALTPGETNAF 502 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH-------RNHPSLSAYFDEG 318 + + + Q + +++ E + + + Sbjct: 503 QELARQLSARLESEVEQRRSALHAEEADDSTAEQPHDDAIFDTEEDATPDEASTQLRRPA 562 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + +D+ P+ +Y L +AN +FL T Y S+ + GGL L P ++D Sbjct: 563 PSQNTSLIDRLPLGVLIYRADRLLHANATFLAATGYASLAALNKDGGLGALYVGPGVADV 622 Query: 379 NAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 +A + +ARLHTI W+ E++LA+ P Q P E Sbjct: 623 SAADDGTPIKVSTLAMGEDNGRNARLHTIDWDGESALALILSPDSPQPQAEHAAPVAIAE 682 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 P + IE +L +ILE T++G+ + + +G +++ NR+ LF D+ Sbjct: 683 P------PPPAEARIEADELATILETTAEGVVMFDGDGRVIACNRSAEALFSRDGTDLEG 736 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS 552 + + + YL +I S + E + LG + ++L + + + Sbjct: 737 QNLIELFAPESQRAVLDYLEDIKSDAMESLFEQGRDVLGRAPDGGAMALSVTMGRTRPGR 796 Query: 553 -CYSLTMHD----------ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 Y D S + + K+ EK +S K+D LAR+SHE+R P++ Sbjct: 797 ARYFAVFRDKPPPAFTAPVASPLRAAEQA----KRADEKAASAKADLLARLSHEVRAPVS 852 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIGF++V+ +RFG LGN RYI+Y I SG V+ I++D+LD+S+IESGK++L F P Sbjct: 853 AIIGFADVMIEERFGALGNERYIDYMKDIRASGERVISIIDDMLDLSRIESGKLDLDFTP 912 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 L+ V + + ++Q AN +RI+IR+S + +P I AD +++QIAL ++ AIH + Sbjct: 913 QDLNALVEQCVGMMQPQANRERIIIRSSLTHGLPNIEADTHALRQIALTLIGTAIHLANA 972 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GGQ+I+ST T EV LR+RDTG GM + E+ AM PF + P+ G G L A Sbjct: 973 GGQVIVSTALTDLGEVALRIRDTGQGMNDNEIAAAMAPF-RTPSPADEVAAGNGANLSRA 1031 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808 KA+++AN G+F+I S P GTLIE +F Sbjct: 1032 KALIEANRGRFHIKSAPNAGTLIEAVF 1058 >gi|299132031|ref|ZP_07025226.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298592168|gb|EFI52368.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 1041 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 216/791 (27%), Positives = 349/791 (44%), Gaps = 52/791 (6%) Query: 49 FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 + T + D +RFTW +DA G + E IG Sbjct: 265 PDSPPETS-PAAAPELIPLPDDLAGQR---RRHPLRFTWAMDAEGRFSFGAGEFTHLIGA 320 Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 G +V+ L +DP N + + ++T+ WP +G +P++++ LPI Sbjct: 321 QTTAAFGRLWSEVNAALALDPENRVAHAIATRDTFSNILLQWPADGLAGRLPVEMSGLPI 380 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + R+ F+G+RGFGI A +R D F + +E S + Sbjct: 381 FGRDHAFAGYRGFGICRDLDGLT-RVAAQRRHDTLFG------SSPAPLETPAPTAASPE 433 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P P ++ E + P + + + P N Q +Q Sbjct: 434 PPAPEATAPQTETAFGEPAETEGSETPPNVVPFRAANDDARPPVLTPGENNAFQELARQL 493 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE------------------------ 324 L++ ++ L + S+ +++ E Sbjct: 494 SERLEHETERRLSALHEEEQANDSSAAQPHDDMIFESGEDEIEVPPAQLSPVARAPQNTS 553 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 D+ P VY L YAN +FL T Y +++ + GGL L ++D +A Sbjct: 554 LYDQLPSGVLVYRADRLLYANNAFLAATGYATLNALNKDGGLGALYVGSGVADTDASGEG 613 Query: 385 M----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 S A ARLHT+ W EN+LA+ P Q +P Sbjct: 614 TPIKVSTVSMGAHQALDARLHTVDWEGENALALILSPPVAPAQTDYAIPVAA-------E 666 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + IE +L +ILE T++G+ + + +G I++ NR+ LFG + Sbjct: 667 PLPRAGDLIESDELATILETTAEGVMMFDSDGGIIACNRSAEALFGRDG--LEGHNLIEL 724 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS-CYSLT 557 + + YL I S ++ E + LG + ++L + + + Y Sbjct: 725 FAPESQRAVLDYLEGIKSGAMQGLFEQGRDVLGRAPDGGAMALSVTMGRTRPDRPRYFAV 784 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D K+ E+ ++ K+D LAR+SHE+R P+ AIIGF++V+ +RFG Sbjct: 785 FRDKPPAAPALRAPDQDKRADERAANAKADLLARLSHEVRAPVNAIIGFADVMIEERFGA 844 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LGN RY +Y I SG V+ I++D+LD+S+IESGK++L F L+ V + + ++Q Sbjct: 845 LGNERYADYMKDIRASGERVISIIDDMLDLSRIESGKLDLEFASQDLNALVEQCVGVMQP 904 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 AN +RI+IR+S + +P I AD R+++QIAL ++ AI +GGQ+I+ST EV Sbjct: 905 QANRERIIIRSSLTHGLPNIQADARALRQIALTLIGCAIRLANAGGQVIVSTALNDLGEV 964 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 LR+RDTG GM + E+ AM PF + P+ G G L LAKA+V+AN G+F++ S+ Sbjct: 965 ALRIRDTGHGMNDNEIAAAMAPF-RTPSPTDEVAAGNGANLSLAKALVEANRGRFHLRSS 1023 Query: 798 PAKGTLIEIIF 808 P GTLIE++F Sbjct: 1024 PNTGTLIEVVF 1034 >gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 1262 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 238/625 (38%), Positives = 350/625 (56%), Gaps = 12/625 (1%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 R K +K + + ++ + + + T Sbjct: 639 ALTAAEQANFREIAKRLEAFGARKDEPAAPAPRGAGATETAAFEESVKPDTIKDETPLAD 698 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D+ E P E++ + ++ + E L+ Sbjct: 699 TADNASAEEMAPQEAIFENA--AEVQREEAEGPAAIEEDEATEGLEETVSQIEVLTSFIP 756 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 P + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ Sbjct: 757 PR----VKMTDGLSAGTVDQLPVAVLIHVGDALLHANPEFMRLTGYSSLDALRDVGGIEA 812 Query: 369 LLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 LL L +N A +ML ++D T +ARL +++W N+L + +P + Sbjct: 813 LLQRRDLEENAAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTE 872 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 ++ PE + ++ K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y Sbjct: 873 AGRSEARPERMVEKVA--KLQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNY 930 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII 545 ++ KPF + + + YL + + L + +G + L + + Sbjct: 931 DEQETRGKPFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTM 990 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 +L S+ Y + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIG Sbjct: 991 GRLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIG 1050 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++ +RFGP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+ Sbjct: 1051 FSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLN 1110 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 EAVSEA++LVQ AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI Sbjct: 1111 EAVSEAVALVQPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQI 1170 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAM 784 ++ST++ +N V+LRVRDTGVGMT EL++AMKPF Q+ ++Q GTGLGLPL KAM Sbjct: 1171 VVSTSYEANGSVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAM 1230 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 VDAN F I S P +GTL+EI FP Sbjct: 1231 VDANRATFSINSAPNEGTLVEITFP 1255 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 154/463 (33%), Gaps = 25/463 (5%) Query: 36 TEKSKK-ENPCHDSFE-QSNFTDQNQESVSNTNYLDSEN---TFVFDPIPRTVRFTWNID 90 E + + P ++ S +S+ + FVF P R RF W ID Sbjct: 362 AEPAAASQTPVEEAPAMASGAPAVAAPLISDAPPAPAPAAQPGFVFRPNSRATRFVWKID 421 Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G E+S E + +G +A +IG D++ + ++DP+ + + L R++TW GKT LW Sbjct: 422 AEGRFNEVSHEFAEAVGPHASAIIGSAFSDIAALFNLDPDGKLSEALARRDTWSGKTILW 481 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 P+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L + Sbjct: 482 PVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLGQDGVGHDAA 541 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 G + + + + + E P + E + Sbjct: 542 SLGPIAEPAAEPAHDVEARSEAAAAEPPVADANGDEALAAAAPQAEETAPAAETGEETTF 601 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E+ + F + H + +A + E + Sbjct: 602 ERPARDNAADEPPALRIVETP-----NRRFTDKVVQLHSTGAALTAAEQANFREIAKRLE 656 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 F P T+ + ++ + +DN + + + Sbjct: 657 A--FGARKDEPAAPAPRGAGATETAAFEESVKPDTIKDETPLADTADNASAEEMA----- 709 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 A +Q A + + Sbjct: 710 -PQEAIFENAAEVQREEAEGPAAIEEDEATEGLEETVSQIEVLTSFIPPRVKMTDGLSA- 767 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 ++ + I + +L N +L GY D L Sbjct: 768 -----GTVDQLPVAVLIHVGD-ALLHANPEFMRLTGYSSLDAL 804 >gi|114706370|ref|ZP_01439272.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] gi|114538231|gb|EAU41353.1| putative sensor histidine kinase protein [Fulvimarina pelagi HTCC2506] Length = 1146 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 236/817 (28%), Positives = 374/817 (45%), Gaps = 60/817 (7%) Query: 44 PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103 ++S + FV D R+ RF W +D G +S E Sbjct: 332 ETAFLPDESRTVSSPAAGEPDFGSSKD---FVPDFSERSKRFVWRLDQEGRFHALSPEFA 388 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 +G A +IG+ D+S+ L +DP+ I L+ R++TW ++ LWP+E ++ VPIDL Sbjct: 389 SVVGPRAADVIGIAFADLSEALDLDPSGEIASLIDRRDTWSDRSVLWPVEASDKRVPIDL 448 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 AALP+YSR+R F GFRGFG++ + DP GKRL + + + S E D Sbjct: 449 AALPVYSRDRSFDGFRGFGVLRPAEAETDPENWGKRLANGETMHEIVAEAVRSRPVEVAD 508 Query: 224 IFSQQS-------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 ++ ++ L + +D L E+ + +L Sbjct: 509 FGTEDDDEDANTLEQITDDASGLPDETEQIVRLADRRLRRDAPLSDEEAAAFRTIGVALS 568 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP------SLSAYFDEGENLTPE 324 E ++ T K+ S + + H SLS +G +L Sbjct: 569 GSERGGNLDAAIQTAKEKIALFGGPPLLSSANIHRKRHAGDTEAGSLSEPQRQGSDLAIA 628 Query: 325 T-----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 T + P+P V S + + N F LT Y+ + AGGL L D + + Sbjct: 629 TDLAAYYGRLPVPILVQSGDHTVFTNEEFADLTGYRDATALSAAGGLDRLFDESERGEC- 687 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 V L R++ I AR+ I + L ++F + + ED Sbjct: 688 ----VRLRRANGKTIDVRARMQRITMRGRSFLVISFFATPRMTVSDLQPKGAPLITEDKA 743 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG------------- 486 + E + QL + +EA + + +++ EG + + N +LF Sbjct: 744 DDVEALDAEARLAQLMASVEAAGEAVLVLDHEGRVEAANERGIELFASAVRPDQDHVATK 803 Query: 487 ------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKL 538 P + FT E + S+ + E + R + + + Sbjct: 804 MDDDGAAPSTPLQGFLFTKLFEGESRSLARELIRETSLGLREDRAGGDADLAVRIADGEP 863 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISE------WKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + + + M D+ E + E + A+ AE +S K+ LA V Sbjct: 864 RKFTTVAEPLE-TGGWCVVMRDLGEPGVRGVFPDEDEDVRTAQHRAEADSVRKTQLLASV 922 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+TA++GF++ I+ + FGP+GNPRY++Y I RS VLD+VNDLL++SK E+ Sbjct: 923 SHEIRTPMTAVLGFADAIEGEAFGPIGNPRYLDYIADIKRSSRHVLDLVNDLLELSKAEA 982 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G + L F V+L++ V E +S++Q A RI++R++ ++P+++AD RS++QI N++ Sbjct: 983 GGLELDFRTVALNQVVGEVVSMMQPVAGGARIVLRSNLPPSVPQVVADERSIRQIMTNLV 1042 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI+ TP+GGQII+S+ + + V LR RD GVGM ELE A +PFG+ R Sbjct: 1043 QNAINSTPAGGQIIVSSQYREDGSVTLRCRDNGVGMNEKELEFAKQPFGRPKLDGGPRRR 1102 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGLPLA AM +AN I S P GT++E+ FP Sbjct: 1103 GTGLGLPLAYAMAEANGAAIAIDSAPQNGTMVELRFP 1139 >gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1296 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 241/657 (36%), Positives = 367/657 (55%), Gaps = 13/657 (1%) Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 + ++ P + + G + R + KRL+ F + G + Sbjct: 638 LRISETPNRRFSDKIVQLHNSGAALTAAEQANFREIAKRLEA-FGASKDEPAGPGRSDPA 696 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTI 278 + S + +K + + A + + ++ + +ED ++ Sbjct: 697 ATETASFEEASGAEDLKAETPIADKAEAPSLEEIAPQEAIFENAADAQRDDDAREDDASV 756 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 + + E L+ P + L+ TVD+ P+ ++ Sbjct: 757 EATDDIDEDEATEGLEETVSQIEVLTSFIPPR----VKMTDGLSLGTVDQLPVAVLIHVG 812 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAAS 397 L +ANP F+ LT Y S+D + GG+ LL +L + A +ML ++D + + + Sbjct: 813 DALLHANPEFMRLTGYTSLDALREVGGIEALLQRRELEEKAAGSGTMMLVKADDSLVPVT 872 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLC 455 ARL +++W N+L + +P E + + ++ E R+ + K+++EV +L Sbjct: 873 ARLQSVRWEDANALMLALMPVEGKEEGRSDAGRSEGRTEARPERMVEKVAKLQVEVEELR 932 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 SILE +DG+ +I EG I S NR+ S LF Y ++ KPF + + + YL Sbjct: 933 SILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHESQKAVLDYLHG 992 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + L + +G + L + + +L S+ Y + DI++WK+ +++L + Sbjct: 993 LSGHGVASVLNDGREVIGREAAGGFVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRN 1052 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RFGP+G+PRYIEYAN I RS Sbjct: 1053 AKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRS 1112 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LVQ AN +R++IRT+ ++ Sbjct: 1113 GRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHA 1172 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N V+LRVRDTG+GMT EL Sbjct: 1173 VPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSEL 1232 Query: 754 EKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++AMKPF Q+ ++Q GTGLGLPL KAMVDAN F I S P +GTL+EI FP Sbjct: 1233 DQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAVFSINSAPNEGTLVEITFP 1289 Score = 180 bits (458), Expect = 6e-43, Method: Composition-based stats. Identities = 103/550 (18%), Positives = 188/550 (34%), Gaps = 58/550 (10%) Query: 39 SKKENPCHDSF---EQSNFTDQNQESVSNTNYLDSEN--------TFVFDPIPRTVRFTW 87 + E P + + + V+ D+ F+F P R RF W Sbjct: 355 TTAEPPVETGETPVDAAPEAVHEEPVVAPPMVADASPAPELVAAPGFIFRPNSRATRFVW 414 Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 IDA G E+S E + +G +A ++IG DV+ + ++D + + + L R++TW GKT Sbjct: 415 KIDAEGRFNEVSHEFAEAVGPHASEIIGSAFGDVAALFNLDSDGKLAEALARRDTWSGKT 474 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L Sbjct: 475 ILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLGPDGV-- 532 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 GH + ++ + + S +D P +E Sbjct: 533 -----GHDAASLGPVTETVAEAALEVPAAQEEAPSEPALTDEVEDKALAASEPQPETEPE 587 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + ++ ++ +Q ++S ES + + +S Sbjct: 588 EITAEQASGERAADEPPFQQSASETADDSAESGDISAVDPAAEMSNEPPALRISETPNRR 647 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 +++ G A K ++ + P SD A + Sbjct: 648 FSDKIVQLHNSGAALTAAEQANFREIAKRLEAFGASKDEPA---GPGRSDPAATETASFE 704 Query: 388 RSDR-------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + T IA A +++ + + + +D+D Sbjct: 705 EASGAEDLKAETPIADKAEAPSLEEIAPQEAIFENAADAQRDDDAREDDASVEATDDIDE 764 Query: 441 RINKRKMEIEVMQLCSI------------------LEATSDGIAIINREGIILSTNRAVS 482 +E V Q+ + ++ + I + +L N Sbjct: 765 DEATEGLEETVSQIEVLTSFIPPRVKMTDGLSLGTVDQLPVAVLIHVGD-ALLHANPEFM 823 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L GY D L L + L+ + + ++ L+ + Sbjct: 824 RLTGYTSLDAL-----------REVGGIEALLQRRELEEKAAGSGTMMLVKADDSLVPVT 872 Query: 543 IIIKKLPFSS 552 ++ + + Sbjct: 873 ARLQSVRWED 882 >gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1276 Score = 482 bits (1240), Expect = e-133, Method: Composition-based stats. Identities = 245/656 (37%), Positives = 363/656 (55%), Gaps = 16/656 (2%) Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 + ++ P + + G + R + KRL+ F + + +E Sbjct: 623 LRISETPNRRFSDKIVQLHNTGAGLTAAEQANFREIAKRLEA-FGANKDEPAAPAPMEPN 681 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL-PEQEDFHTIN 279 + + + T D E P E+++ E+ED Sbjct: 682 ATETAAFNEASG----PEAFGAETPTADQADIPSLEEIAPQEAIFENAVEAEREDDGATE 737 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + + E L+ P + L+ TVD+ P+ ++ Sbjct: 738 EPAVIVEDEATEGLEETASQIEVLTSFIPPR----IKMTDGLSVGTVDQLPVAVLIHIGD 793 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASA 398 L +ANP F+ LT Y S+D + GG+ LL +L + A +ML ++D T +A Sbjct: 794 ALIHANPEFMRLTGYGSLDALREVGGIEGLLQRRELEEKAAGSGTMMLVKADDTLAPVTA 853 Query: 399 RLHTIQWNRENSLAMTFIPFEK-ANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCS 456 RL +++W N+L + +P E + + +G + + + K K+++EV +L S Sbjct: 854 RLQSVRWEDANALMLALMPVEGKEDGRGDANRFDGRSEDRPERMVEKVAKLQVEVEELRS 913 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ILE +DG+ +I EG I S NR+ S LF Y ++ KPF + + + YL + Sbjct: 914 ILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHESQKAVIDYLNGL 973 Query: 517 LSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + L + +G + L + + +L S+ Y + DI++WK+ +++L +A Sbjct: 974 SGHGVASVLNDGREVIGREAAGGFVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRNA 1033 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RFGP+G+PRYIEYAN I RSG Sbjct: 1034 KGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSG 1093 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LVQ AN +R++IRT+ + + Sbjct: 1094 RHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSQAV 1153 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N V+LRVRDTG+GMT EL+ Sbjct: 1154 PEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSELD 1213 Query: 755 KAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +AMKPF Q+ ++Q GTGLGLPL KAMVDAN F I S P +GTL+EI FP Sbjct: 1214 QAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFTINSAPNEGTLVEITFP 1269 Score = 184 bits (467), Expect = 6e-44, Method: Composition-based stats. Identities = 99/474 (20%), Positives = 170/474 (35%), Gaps = 39/474 (8%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 E ++ E+ E++ V L++E+ FVF P R RF W IDA G Sbjct: 353 EASETPIEDAPEAVHEETAIATPVVPDVPPAPQLEAESGFVFRPNSRATRFVWKIDAEGR 412 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 E+S E +G +A +IG DV+ + ++DP+ + + L R++TW GKT LWP+EG Sbjct: 413 FNEVSHEFAAAVGPHASDIIGSAFGDVAALFNLDPDGKLSEALARRDTWSGKTILWPVEG 472 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 T+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L + Sbjct: 473 TSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLG------PDGIGHD 526 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 ++ + ++ + ++ + + +D L + + E EQ Sbjct: 527 AASLGPPAETIAEVAHEAETVLEEPLIDPSPTQEVEDQALTASEPQAEPAPEEIATEQAA 586 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + K + + S + P+L + + Sbjct: 587 EIPAQESAAEKAEGSADAGDISAAEPVAELPQEPPALRISETPNRRFSDKI-------VQ 639 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 +++ G A K ++ AP + NA + + Sbjct: 640 LHNTGAGLTAAEQANFREIAKRLEAFGANKDEPA---APAPMEPNATETAAFNEASGPE- 695 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEV 451 A A T SL E ++ E + +E Sbjct: 696 AFGAETPTADQADIPSLEEIAPQEAIFENAVEAEREDDGATEEPAVIVEDEATEGLEETA 755 Query: 452 MQLCSI------------------LEATSDGIAIINREGIILSTNRAVSKLFGY 487 Q+ + ++ + I + ++ N +L GY Sbjct: 756 SQIEVLTSFIPPRIKMTDGLSVGTVDQLPVAVLIHIGD-ALIHANPEFMRLTGY 808 Score = 41.6 bits (96), Expect = 0.56, Method: Composition-based stats. Identities = 54/493 (10%), Positives = 122/493 (24%), Gaps = 58/493 (11%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 L + + G+ A + + D +DI L ++ + + Sbjct: 36 RLLWANGAGAELFGHSAVYDLLDQGVDRADITFRQLETAARQLTDIGDSRS---LMIRVA 92 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 + AA I E I+ V P A G + L + Sbjct: 93 KGFQRAQVQAAAELIRLSQGE------QAILFSVPVSAKPLAAGASAAQMLQGLDD-PDT 145 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPE 271 H +V ++ + L + + + AH D ++K + +++ + Sbjct: 146 HMAVIGANGEVIAASPGFASLGISEQTAKTLINLAGAHPDRLVKRPVATGRGNLPAAVGK 205 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 D +NL + ++ + P + +E D Sbjct: 206 LSDDPALNLLFAVETAVGHLDPVDAPALAPVDAPALDPVDAPAQEESAPPMEVLQD---E 262 Query: 332 PFFVYSHGNLFYA-----------------NPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 P + A N + + + I+ D + Sbjct: 263 PVAATGFTEIIDAVSGIEEVEETLEEITGENEQPAEIAVASADEAIDGM-------DPAE 315 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 ++ + V +D + +I E + + P E A + Sbjct: 316 DAEPKSDDGVTDSSADEPAAVIEDDVTSIAETAEPPVEASETPIEDAPEAVHEETAIATP 375 Query: 435 PEDVDTRINKRKMEI--------EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + E + + I+ EG + + G Sbjct: 376 VVPDVPPAPQLEAESGFVFRPNSRATRF----------VWKIDAEGRFNEVSHEFAAAVG 425 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 DI+ F + L+E L+ + + I ++ + + Sbjct: 426 PHASDIIGSAFGDVAALFNLDP-DGKLSEALARRDTWSGKTILWPVEGTSLVVPVDLAAL 484 Query: 547 KLPFSSCYSLTMH 559 + Sbjct: 485 PTYTRNRDFDGFR 497 >gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 1257 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 234/620 (37%), Positives = 348/620 (56%), Gaps = 9/620 (1%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDV 253 AL F + + + + +E + + + V + D Sbjct: 635 ALTAAEQANFREIAKRLEAFGARNEEPAAPAPRDAAAETAAFEESVKPDTIKDETPLADT 694 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + +E+ + + + + + + Sbjct: 695 ADNASAEEMAPQEAIFENAAEAVREEAEGPAAIEEDEATEGLEETVSQIEVLTSFIPPR- 753 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + L+ TVD+ P+ ++ L +ANP F+ LT Y S+D + GG+ LL Sbjct: 754 -VKMTDGLSAGTVDQLPVAVLIHVGDALMHANPEFMRLTGYSSLDALRDVGGIEALLQRR 812 Query: 374 KLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L +N A +ML ++D T +ARL +++W N+L + +P + ++ Sbjct: 813 DLEENAAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTEAGRSE 872 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 PE + ++ K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ Sbjct: 873 ARPERMVEKVA--KLQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNYDEQET 930 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550 KPF + + + YL + + L + +G + L + + +L Sbjct: 931 RGKPFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTS 990 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S+ Y + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ Sbjct: 991 SNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMM 1050 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +RFGP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSE Sbjct: 1051 AGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSE 1110 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A++LVQ AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST+ Sbjct: 1111 AVALVQPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTS 1170 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANM 789 + +N V+LRVRDTGVGMT EL++AMKPF Q+ ++Q GTGLGLPL KAMVDAN Sbjct: 1171 YEANGSVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANR 1230 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 F I S P +GTL+EI FP Sbjct: 1231 ATFSINSAPNEGTLVEITFP 1250 Score = 164 bits (414), Expect = 8e-38, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 123/305 (40%), Gaps = 6/305 (1%) Query: 26 SKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESV-----SNTNYLDSENTFVFDPIP 80 + + D ET ++ + + + + + ++ FVF P Sbjct: 348 AARSADESAETNETAEPAEASQTPVEEAPAMAAAAAPLISEPAPAPAPAAQPGFVFRPNS 407 Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 R RF W IDA G E+S E + +G +A +IG D++ + ++DP+ + ++L R+ Sbjct: 408 RATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFADIASLFNLDPDGKLSEVLARR 467 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L Sbjct: 468 DTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTL 527 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + H+ E ++ + V+ A + E+ Sbjct: 528 -GQDGVGHDAASLGPIAEPAAEPAQDVEATSEAAAAEPPVADANGDEAPTAAAPQAEETA 586 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + T + L +A Sbjct: 587 PAAETGEETTFETPARDNAADEPPALRIVETPNRRFTDKVVQLHSTGAALTAAEQANFRE 646 Query: 321 LTPET 325 + Sbjct: 647 IAKRL 651 >gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 1266 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 240/648 (37%), Positives = 356/648 (54%), Gaps = 17/648 (2%) Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 P + G + R + +RL+ + Sbjct: 625 TPSRRSTDKVVQLHSTGAALTAAEQANFREIARRLE------AFGARREEPDAPPTGTTA 678 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 ++ +P ++ T D E P E+++ + Sbjct: 679 TEAAPFEERAAPEAITGETPAADTADAASVEETAPQEAIFENAV-DPLREDAAEETGAIA 737 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 + + E L+ P + L+ TVD+ P+ ++ L +AN Sbjct: 738 EDEATEGLEETVSQIEVLTSFIPPR----VKMIDGLSAGTVDQLPVAVLIHVGDALIHAN 793 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQ 404 P F+ LT Y S+D + GG+ LL +L + A +ML ++D T +ARL +++ Sbjct: 794 PEFMRLTGYHSLDALREVGGIEALLQRRELEEKAAGSGTMMLVKADDTLTPVTARLQSVR 853 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 W N+L + +P E + ++ PE + ++ K+++EV +L SILE +DG Sbjct: 854 WEDANALMLALMPVEGKEDGRGDSNRSEARPERMVEKVA--KLQVEVEELRSILETATDG 911 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + +I EG I S NR+ S LF Y ++ KPF + + + YL + + Sbjct: 912 VVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHESQKAVLDYLNGLAGHGVASV 971 Query: 525 LE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 L + +G + L + + +L S+ Y + DI++WK+ +++L +AK AE + Sbjct: 972 LNDGREVIGREAGGGFVPLFMTMGRLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETAN 1031 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 +HK+DFLARVSHEIRTPL AIIGFS+++ +RFGP+G+PRYIEYAN I RSG VLDIVN Sbjct: 1032 AHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVN 1091 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLDISKIE+G+M+L F V L+EAVSEA++LVQ AN +R++IRT+ ++++P ++ADLR Sbjct: 1092 DLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHSVPEVVADLR 1151 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 S+KQIALNILSNAI FTPSGGQI++ST++ +N V+LRVRDTG+GMT EL+ AMKPF Q Sbjct: 1152 SIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRAELDHAMKPFRQ 1211 Query: 763 IPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + ++Q GTGLGLPL KAMVDAN F I S P +GTL+EI FP Sbjct: 1212 VSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSINSAPNEGTLVEITFP 1259 Score = 175 bits (443), Expect = 4e-41, Method: Composition-based stats. Identities = 93/515 (18%), Positives = 164/515 (31%), Gaps = 31/515 (6%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTN-YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101 + D+ + S + T L E FVF P R RF W IDA G E+S E Sbjct: 368 DEAPDAVREEPAVAATAASDAPTAPSLAPEPGFVFRPNSRATRFVWKIDAEGRFNEVSHE 427 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 + +G +A +IG D++ + ++DP+ I + L R++TW GKT LWP+EGT+L VP+ Sbjct: 428 FAEAVGPHASAIIGSAFSDIAALFNLDPDGKISEALARRDTWSGKTILWPVEGTSLVVPV 487 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD--KKFSHLHEIKKGHSSVEK 219 DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L + +V + Sbjct: 488 DLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLRPNGIGHDAAGLGPAADAVSE 547 Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHT 277 ++I + P + E+ S E+ E Sbjct: 548 PAHEIEAAPEAAPAETIAADAIEDHPQIEETPFEATGEEAGFEPPARESAAEEMQESAGE 607 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + + + + H + +A + E + + Sbjct: 608 APAADAADEPPALRIVDTPSRRSTDKVVQLHSTGAALTAAEQANFREIARRL------EA 661 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G + T E + +D V Sbjct: 662 FGARREEPDAPPTGTTATEAAPFEERAAPEAITGETPAADTADAASVEETA--PQEAIFE 719 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + ++ + + + Sbjct: 720 NAVDPLREDAAEETGAIAEDEATEGLEETVSQIEVLTSFIPPRVKMIDGLSA------GT 773 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 ++ + I + ++ N +L GY D L L + Sbjct: 774 VDQLPVAVLIHVGD-ALIHANPEFMRLTGYHSLDAL-----------REVGGIEALLQRR 821 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L+ + + ++ L + ++ + + Sbjct: 822 ELEEKAAGSGTMMLVKADDTLTPVTARLQSVRWED 856 >gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1310 Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats. Identities = 236/633 (37%), Positives = 352/633 (55%), Gaps = 21/633 (3%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 A G R ++ + E ++ + + + + + Sbjct: 678 KRLEAFGTRKEEPAASAPMEPSATVPAEPAVTEMAGFEEASGPEAFEAETPTADDADIPS 737 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + ++ + E+ E+ED + + E L+ P Sbjct: 738 LKEITPQEAIFENAVEA---EREDDDAAEEPAVIAEDEATEGLEETASQIEVLTSFIPPR 794 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + L+ TVD+ P+ ++ L +ANP F+ LT Y S++ + GG+ LL Sbjct: 795 ----IKMTDGLSVGTVDQLPVAVLIHIGDALIHANPEFMRLTGYGSLEALREVGGIEALL 850 Query: 371 DAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA-----NQF 424 +L + A +ML ++D T +ARL +++W N+L + +P E + Sbjct: 851 QRRELEEKAAGSGTMMLVKADDTLAPVTARLQSVRWEDANALMLALMPVEGKEDGRSDAN 910 Query: 425 PENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + G + R + K+++EV +L SILE +DG+ +I EG I S NR Sbjct: 911 RTDGRSEGRSEGRSEGRPERMVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNR 970 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEK 537 + S LF Y ++ KPF + + + YL + + L + +G Sbjct: 971 SASALFNYDEQETRGKPFVMLFAHESQKAVIDYLNGLSDHGVASVLNDGREVIGREAAGG 1030 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L + + +L S+ Y + DI++WK+ +++L +AK AE ++HK+DFLARVSHEIR Sbjct: 1031 FVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIR 1090 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AIIGFS+++ +RFGP+G+PRYIEYAN I RSG VLDIVNDLLDISKIE+G+M+L Sbjct: 1091 TPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDL 1150 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 F V L+EAVSEA++LVQ AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI Sbjct: 1151 DFAAVGLNEAVSEAVALVQPQANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIR 1210 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGL 776 FTPSGGQI++ST++ +N V+LRVRDTG+GMT EL++AMKPF Q+ ++Q GTGL Sbjct: 1211 FTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGL 1270 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLPL KAMVDAN F I S P +GTL+EI FP Sbjct: 1271 GLPLTKAMVDANRATFSINSAPNEGTLVEITFP 1303 Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats. Identities = 99/482 (20%), Positives = 169/482 (35%), Gaps = 42/482 (8%) Query: 41 KENPCHDSFE---QSNFTDQNQES-VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96 E P D+ E + + V L +E FVF P R RF W IDA G Sbjct: 372 SETPIEDTPEVVHEEPVIATLVVADVPPAPQLAAEPGFVFRPNSRATRFVWKIDAEGRFT 431 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156 E+S E + +G +A +IG DV+ + ++DP+ + + L R++TW GKT LWP+EGT+ Sbjct: 432 EVSHEFAEAVGPHASDIIGSPFGDVAALFNLDPDGKLSEALARRDTWSGKTILWPVEGTS 491 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 L VP+DLAALP Y+RNR+F GFRGFG+V ++ DP ALG L + ++ Sbjct: 492 LVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLG------PDGIGHDAA 545 Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276 + ++ + ++ V +D + + + E EQ Sbjct: 546 SLGPPAETIAEVAHEAETVLEEPVIDPAPTQEVEDQAVTASEPQTEPAPEEISTEQAAIE 605 Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 T +K + + P + + + ++ Sbjct: 606 TPAQESAAEKAEGSADAGDVSAAEPVAELPQEPPALRISETPNRRFSDKI------VQLH 659 Query: 337 SHGNLFYANPSFLLLTKYKSVDDI----EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + G A K ++ E + + + + A+ + + Sbjct: 660 NSGAGLTAAEQANFREIAKRLEAFGTRKEEPAASAPMEPSATVPAEPAVTEMAGFEEASG 719 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ---NGIEPEDVDTRINKRKMEI 449 A A T SL E + EP + +E Sbjct: 720 PEAFEAETPTADDADIPSLKEITPQEAIFENAVEAEREDDDAAEEPAVIAEDEATEGLEE 779 Query: 450 EVMQLCSI------------------LEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 Q+ + ++ + I + ++ N +L GY + Sbjct: 780 TASQIEVLTSFIPPRIKMTDGLSVGTVDQLPVAVLIHIGD-ALIHANPEFMRLTGYGSLE 838 Query: 492 IL 493 L Sbjct: 839 AL 840 >gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1260 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 209/634 (32%), Positives = 344/634 (54%), Gaps = 16/634 (2%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 R+D P + + + ++ ++ + ++ + Sbjct: 625 ARLDGHPDEAAREAPPGMNVTGSLLDYAGQDDERGPVAAEPENTTAVSPGEEPEATDATH 684 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 DD + + + E E+ + + ++ + L Sbjct: 685 DVLDDDSMTSADFRDAEDSEDWAQPDEEAASPDERAVAEQAVNAGDAAEIRVERPRLQVP 744 Query: 307 N------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 PS + DE + + K P+P ++S L YAN FL LT Y+++DD+ Sbjct: 745 PLKAEGFVPSAFSAGDEHKAPDTSLLGKLPVPLLIHSGDQLHYANEEFLSLTGYEALDDL 804 Query: 361 EIAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 AGGL L P D + + + L D A L ++ W +L + Sbjct: 805 ADAGGLGALFADPYADDGVSDGTDRALRLKTRDGQEFPIEAILRSVPWRDGKALMLVVRR 864 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + P ++ G E D +++ + ++ +I++ +DG+ +I R+G I S Sbjct: 865 -SGEDDAPASLHVVGDEQTQPDI----SELKARIAEMRTIIDTATDGVVLIGRDGTIRSI 919 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKE 535 +R LFG+ +D+ KPF + YL + + + + +G + Sbjct: 920 SRPAEALFGFDSDDVTGKPFASLFAIESQRAARDYLNGLSEPGVASVMNDGREVIGRESQ 979 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + L + I +LP S + + DI++WK+ + L+ A+ +AE+ SS K+DFLAR+SHE Sbjct: 980 GRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHE 1039 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL AIIGFSE++ +++FGP+ N RY +Y I+RSGN VLD+VNDLLDISKIE+G+ Sbjct: 1040 IRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQ 1099 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + +E VSL++ ++E ++++Q AN +R++IR+SFA+ +P ++ADLRSV+QIALNILSNA Sbjct: 1100 EMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNA 1159 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I +T +GGQ+I+ST + ++ +V++RVRDTG+GM++ E+E+A+KPF QI ++ RG+GTG Sbjct: 1160 IRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTG 1219 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGLPL KAMV+AN +F I STP +GTL+E+ FP Sbjct: 1220 LGLPLTKAMVEANRARFTINSTPGEGTLVEVAFP 1253 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 98/571 (17%), Positives = 173/571 (30%), Gaps = 56/571 (9%) Query: 32 NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 N E + P E + V +T+ D VRF W DA Sbjct: 306 NAGEDGGEQAPRPAASGPEAPQEPAALE--VQSTSAATPTTVSAIDRAAAPVRFVWRTDA 363 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G +S E +G A +IG R DV+ +DP+ I LL+R++TW G++ LWP Sbjct: 364 EGKFSALSPEFADIVGKPAADVIGRRFRDVAATFGLDPSGEISGLLERRDTWSGRSVLWP 423 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE-- 209 + GT+L +P+DLAALP+Y R+R F GFRGFG+ + DP A+G L Sbjct: 424 VVGTDLKIPVDLAALPVYGRSRAFEGFRGFGVARASDAVVDPEAIGMALVPNGRAPATPE 483 Query: 210 ---IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 I+ E+ Q+ P ++ + + D + + + Sbjct: 484 PQVIQPAPEQPNAEEPRAEDAQASDPFKGEVPALTIVPKQERRFADKVIRLAEHRQPAND 543 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L E + + KK ++ E+ E + + D Sbjct: 544 KGLSTLERSAFREIGERLKKD-SAPVEPPETETAEASAAETEAPVKVSDDPMRAGGIPAS 602 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG---LSTLLD---APKLSDNNA 380 P + L + E G +LLD A Sbjct: 603 GPENEPVEPSETDVDAEDEQNLARLDGHPDEAAREAPPGMNVTGSLLDYAGQDDERGPVA 662 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 +P + + ++ + F E + + + + E Sbjct: 663 AEPENTTAVSPGEEPEATDATHDVLDDDSMTSADFRDAEDSEDWAQPDEEAASPDERAVA 722 Query: 441 RIN-----KRKMEIEVMQLC-------------------------SILEATSDGIAIINR 470 ++ +E +L S+L + I + Sbjct: 723 EQAVNAGDAAEIRVERPRLQVPPLKAEGFVPSAFSAGDEHKAPDTSLLGKLPVPLLIHSG 782 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 + + N L GY D L + + + + ++ Sbjct: 783 D-QLHYANEEFLSLTGYEALDDL---------ADAGGLGALFADPYADDGVSDGTDRALR 832 Query: 531 GSTKEEKLLSLRIII--KKLPFSSCYSLTMH 559 T++ + + I+ L + Sbjct: 833 LKTRDGQEFPIEAILRSVPWRDGKALMLVVR 863 >gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 1275 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 246/635 (38%), Positives = 360/635 (56%), Gaps = 12/635 (1%) Query: 183 IVHVNRVDNDPRA---LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 +VH+ + R G++ + +S EK + D + P ++ Sbjct: 638 VVHLEDRRSRSREGLTAGEQAAFREIGRALAPSDMASEEKHEADAEGISAEPVVQDIQQD 697 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 +++ T A D E EE L + + + Sbjct: 698 IAAETAKDASSDTGNDAETTE--PVEEDDLFADYVRGEQPAPVRAPTDEPTSAEKQVVTT 755 Query: 300 FE-YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 E ++ +S LT ET+D+ P+ V++ L +ANP FL LT Y S+ Sbjct: 756 DEKPVADIAASMVSPPVRTPSALTAETLDQMPVALLVHAGDRLIHANPDFLRLTGYTSLT 815 Query: 359 DIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 ++E GGL LL +L + + +++ ++ I ARL +I+W +L ++ +P Sbjct: 816 ELEEVGGLEALLQRQELENMPDNEGGMVVVSAENDIIPVKARLQSIRWEETKALMLSLVP 875 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 E+ +N E+ + N ++ E+ +L SILE +DG+ ++ +G I S Sbjct: 876 LEEKPAAVMAANEN--TAENAEAGSNLSLLQGEMEELHSILETATDGVVLLGDDGEIRSL 933 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKE 535 NR+ S LF Y +I KPF + + YL+ + + + L + +G Sbjct: 934 NRSASALFNYDNGEIAGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREAS 993 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 L L + I +L S Y + DI++WK+ + +L +AK+ AE ++HK+DFLARVSHE Sbjct: 994 GGFLPLFMTIGRLKSSHGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHE 1053 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL AIIGFS+++ +RFGP+GNPRY+EYAN I RSG VLDIVNDLLDISKIE+G+M Sbjct: 1054 IRTPLNAIIGFSDMMATERFGPIGNPRYVEYANDIGRSGRHVLDIVNDLLDISKIEAGQM 1113 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 ++ F V L+E V+EA+SLVQ AN +R++IRT+ A ++P+I+ADLRS+KQI LNILSNA Sbjct: 1114 DVDFIAVPLNETVAEAVSLVQPQANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNA 1173 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGT 774 I FTPSGGQI++ST + +N V LR+RDTG+GMT ELE+AMKPF Q+ +S + RG+GT Sbjct: 1174 IRFTPSGGQIVVSTAYEANGSVSLRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGT 1233 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGLPL KAMVDAN F I STP +GTL+EI FP Sbjct: 1234 GLGLPLTKAMVDANRANFSITSTPNEGTLVEITFP 1268 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 94/467 (20%), Positives = 153/467 (32%), Gaps = 46/467 (9%) Query: 37 EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENT-----FVFDPIPRTVRFTWNIDA 91 E + ++ ++ + T + E + T + FVF+ R RF W IDA Sbjct: 379 ENTFADDEIAETEAEEATTAADDELTTETETANIGTGEEARPFVFNAGARASRFVWKIDA 438 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G IS E + +G A + GM DV+ + ++DP+ I +LL R++TW GKT WP Sbjct: 439 EGRFSSISHEFAEAVGAKAAAVEGMGFADVAALFNLDPDGKIRELLGRRDTWSGKTIYWP 498 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +EGT+L VPIDLAALP Y+R REF GFRGFGIV + DP A G Sbjct: 499 VEGTSLMVPIDLAALPTYTRAREFDGFRGFGIVRLADATEDPHATGLTFLNSEETEPAEV 558 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE--ESSL 269 +VE E +++ + + E D L + + + Sbjct: 559 LPQQAVEDESHELLAFVDEDTETDDNPHPALPDEPAVDIDIAGDAADGVLTEEQLDDETS 618 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-------EGENLT 322 PE E + + L++ S E L+ + E Sbjct: 619 PEVESPIEAPAPEPSYSDKVVHLEDRRSRSREGLTAGEQAAFREIGRALAPSDMASEEKH 678 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + V A + + + + L + A Sbjct: 679 EADAEGISAEPVVQDIQQDIAAETAKDASSDTGNDAETTEPVEEDDLFADYVRGEQPAPV 738 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 T SA + + + + + P + Sbjct: 739 RA------PTDEPTSAEKQVVTTDEKPVADIAASMVSPPVRTPSALTAE----------- 781 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 L+ + + + ++ N +L GY Sbjct: 782 --------------TLDQMPVALLVHAGD-RLIHANPDFLRLTGYTS 813 >gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti MAFF303099] Length = 1348 Score = 468 bits (1205), Expect = e-129, Method: Composition-based stats. Identities = 234/818 (28%), Positives = 376/818 (45%), Gaps = 58/818 (7%) Query: 4 DSIISNPEDILTSNCKG-NTQDLSK-KKIDNGFETEKSKKENPCHDSF--EQSNFTDQNQ 59 D +I E +N KG +T + S ++I + + + E P D E+ N Sbjct: 570 DKVIRLAEHRQPANDKGLSTLERSAFREIGERLKKDSAPAEPPEADKPGTERPPEPVINT 629 Query: 60 ESVSNTNYLDSEN-TFVFDPIPRTVRFTWNID--AHGYLKEISEELPKTIGNYAFKMIGM 116 + PI D E + Sbjct: 630 PAEPTAETAAEAPVAKTETPILPADEVVATPDTVPDQKPSEAG----EITAESESD---- 681 Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 +++ D + P + Sbjct: 682 --AALAEPSETDAEDEADLARLDGGHPDDVADAEPAD--------------------TLP 719 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 G G + + +R G D + E V + + Sbjct: 720 GAGGSLLNYADRN----DEPGPVADNDEPPVSEAVAAEPEVTEPVATGDGGDAKDATHDA 775 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + S+T D E E + E T + Sbjct: 776 VDDDDSMT-----SADFRDAEDNEDWGDGEKAAAADEQAATFGAGASDVVESPAGQPRLK 830 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 PS + +E + + K P+P ++S L YAN FL LT Y + Sbjct: 831 VPPLRTEGIV--PSAFSVGNESKAPDTSLLGKLPVPLLIHSGDQLHYANDEFLDLTGYDT 888 Query: 357 VDDIEIAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 ++D+E AGGL L P D + + + + L D A L ++ W +L + Sbjct: 889 LEDLEDAGGLGALFADPYADDGTSDGSDRALRLKTRDGQEFPIDAILRSVPWRDGKALML 948 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + P + G EP D +++ + ++ +I++ +DG+ +I +G Sbjct: 949 VVRR-SGDDDAPVALHAVGEEPTQPDI----SELKARIAEMRTIIDTATDGVVLIGSDGT 1003 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531 I S +R LFG+ +++ KPF + YLT + + + + +G Sbjct: 1004 IRSISRPAEALFGFDSDEVTGKPFASLFAIESQRAARDYLTGLSEPGVASVMNDGREVIG 1063 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + + L + I +LP S + + DI++WK+ + L+ A+ +AE+ SS K+DFLAR Sbjct: 1064 REAQGRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSLKTDFLAR 1123 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL AIIGFSE++ +++FGP+ N RY +Y I+RSGN VLD+VNDLLDISKIE Sbjct: 1124 ISHEIRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIE 1183 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G+ + +E VSL++ ++E ++++Q AN +R++IR+SFA+ +P ++ADLRSV+QIALNI Sbjct: 1184 AGQQEMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNI 1243 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNAI +T +GGQ+I+ST + ++ +V++RVRDTG+GM+ E+E+A+KPF QI ++ RG Sbjct: 1244 LSNAIRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRG 1303 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +GTGLGLPL KAMV+AN +F I STP +GTL+E+ FP Sbjct: 1304 DGTGLGLPLTKAMVEANRARFTINSTPGEGTLVEVAFP 1341 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 79/354 (22%), Positives = 120/354 (33%), Gaps = 11/354 (3%) Query: 45 CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104 + D +ES + + D +RF W DA G +S E Sbjct: 358 VAQATGAEASVDSAKESKPASPAAQTPPARTIDRSAAPLRFVWRTDAEGKFSALSPEFAD 417 Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 +G A +IG R DV+ +D + I LL+R++TW G++ LWP+ GT+L +P+DLA Sbjct: 418 IVGKPAADVIGRRFRDVAAAFGLDASGEIAGLLERRDTWSGRSVLWPVVGTDLKIPVDLA 477 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 ALP+Y R+R F GFRGFG+ + DP A+G L E+ Sbjct: 478 ALPVYGRSRAFEGFRGFGVARASDATVDPEAIGMALVPNGKAPAVSVPQAVEHPAEEPKT 537 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-----KTEKYPLLTSEESSLPEQEDFHTIN 279 ++ P+ K K + + + L E Sbjct: 538 EEPKAKEPNAADPFKGEVPALTIVPKQERRFADKVIRLAEHRQPANDKGLSTLERSAFRE 597 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + + KK + + + A E V K P Sbjct: 598 IGERLKKDSAPAEPPEADKPGTERPPEPVINTPAE-PTAETAAEAPVAKTETPILPADE- 655 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 A P + K +I L P S+ +A L R D Sbjct: 656 --VVATPDTVPDQKPSEAGEITAESESDAALAEP--SETDAEDEADLARLDGGH 705 >gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 1248 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 232/628 (36%), Positives = 343/628 (54%), Gaps = 6/628 (0%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEY 246 R L F + +V E P + Sbjct: 614 RRWRSREGLTAGEQAAFREIGRTLAPLDAVSDEGPKAEEDAPSTDPAAQHIQDDIDAVTQ 673 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + E+ + + + + + Sbjct: 674 VDLPPVLEEDVNAAEPAEEDDLFADYVRGERPAATNKPADEIQIEEKTVAFNEVVPAADI 733 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 +S + L+ ET+D+ P+ V++ L +ANP FL LT Y S+D+++ GGL Sbjct: 734 AAAMVSPPLRPADALSAETLDQMPVALLVHAGDRLIHANPDFLRLTGYGSLDELDEVGGL 793 Query: 367 STLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 LL +L D + +++ ++ I ARL +I+W +L ++ +P E+ Sbjct: 794 EALLQRQELEDMPDNEGGMVVVSAENDIIPVKARLQSIRWEDTKALMLSLVPLEEKQAPV 853 Query: 426 ENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 +N E + ++ EV +L SILE +DG+ ++ +G I S NR+ S L Sbjct: 854 TAANENTSAAETANADAGSVSVLQGEVEELHSILETATDGVVLLGDDGEIRSLNRSASAL 913 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLR 542 F Y +I KPF + + YL+ + + + L + +G L L Sbjct: 914 FNYDNGEIAGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPLF 973 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I +L S Y + + DI++WK+ + +L +AK+ AE ++HK+DFLARVSHEIRTPL A Sbjct: 974 MTIGRLKSSHGYCVVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNA 1033 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGF++++ +RFGP+G+PRY+EY+N I RSG VLDIVNDLLDISKIE+G+M++ F V Sbjct: 1034 IIGFADMMATERFGPIGHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAV 1093 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L+E V+EA+SLVQ AN +R++IRT+ + ++P+I+ADLRS+KQI LNILSNAI FTPSG Sbjct: 1094 PLNETVAEAVSLVQPQANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSG 1153 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLA 781 GQI++ST + +N V LR+RDTG+GMT ELE+AMKPF Q+ +S + RG+GTGLGLPL Sbjct: 1154 GQIVVSTAYEANGSVALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLT 1213 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 KAMVDAN F I STP +GTL+EI FP Sbjct: 1214 KAMVDANRANFSITSTPNEGTLVEITFP 1241 Score = 172 bits (437), Expect = 2e-40, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 152/466 (32%), Gaps = 34/466 (7%) Query: 23 QDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRT 82 Q S+ + + E+++ E+ ++ + ++ + D FVF+ R Sbjct: 349 QASSEDHTEQAPDVERAEAEDEVAETIAAQDAAPVEEDLPAAVEPTDEPQPFVFNAGARA 408 Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 RF W IDA G IS E + +G A + GM DV+ + ++DP I +LL R++T Sbjct: 409 SRFVWKIDAEGRFSSISHEFAEAVGAKAAAVEGMSFADVAALFNLDPEGKIRELLGRRDT 468 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-LD 201 W GKT WP+EGT+L VPIDLAALP Y+R+REF GFRGFGIV + DP A G L Sbjct: 469 WSGKTIYWPVEGTSLMVPIDLAALPTYTRSREFDGFRGFGIVRLADAAEDPHATGLTFLH 528 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + E+ ++ +++ ++ + + + + + Sbjct: 529 GEDILQTEVLPQPAAADED-----------------EELLAFLDELDEEIPAAEDAPAEI 571 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E +F L + + +L R S + Sbjct: 572 SDEERPHDYSPPEFEVPALAI--VPTPEPEPEPTYSDKVVHLEERRWRSREGLTAGEQAA 629 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 E V G P I + + Sbjct: 630 FREIGRTLAPLDAVSDEG------PKAEEDAPSTDPAAQHIQDDIDAVTQVDLPPVLEED 683 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + A R + + + A Sbjct: 684 VNAAEPAEEDDLFADYVRGERPAATNKPADEIQIEEKTVAFNEVVPAADIAAAM-VSPPL 742 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + E L+ + + + ++ N +L GY Sbjct: 743 RPADALSAE------TLDQMPVALLVHAGD-RLIHANPDFLRLTGY 781 >gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1369 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 135/746 (18%), Positives = 277/746 (37%), Gaps = 41/746 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 + D G L ++ L + +G A +++G D + + ++ G Sbjct: 136 FETDLAGNLTFANQALGRILGYPASRLLGKNSRQYMDRENARKVHEAFKEVYATGRAARG 195 Query: 146 KT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + P G+ ++ + I + GFRG I+ + + + Sbjct: 196 LVWEMIPRTGSPRC--VEGSVSLIRDGSGRPCGFRG--ILRDITERLRMEERLRSSEAEL 251 Query: 205 SHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L + + +P P R ++ D + + Sbjct: 252 RALFAAIDDIVLKLDREGRCLDIAPSNPSPLYRPGREMVGRNVREIFPVDEKEPLLDSVR 311 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ P + + + + E Sbjct: 312 RVLQTGRPAAMECSMQLGYRRLYFDVSISPEGEGAAVLVARDVTRERLAEQELRRAEERY 371 Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +++ P + G Y +P + Y D + P+ D Sbjct: 372 RRLIEQIPGIVYTEDARTGETLYDSPRVEEILGY-PADTYRKDPNYWQKIIHPE--DREL 428 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 ++ + S ++A R+ + + + GI + + Sbjct: 429 LRALEERASREGKLSAEYRVFA---ADGRVVWVREEGALIPGEEGRPDVWQGIILDITER 485 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ + + + G+A++ +G L NRA+ ++ GYP E +L+K F Sbjct: 486 KRAEQALHESEQRFRRAFDDAPIGMALVGLDGRWLQANRALCEIVGYPRERLLQKTFQDI 545 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556 L +++ ++ + +++ + + + + + Sbjct: 546 THPEDLDADLELLRRLVAREIPG-YQMEKRYIHASGRIVWVLLSVSLVTGENDEPLYVIA 604 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E K+ + +L AK+ AE S KS+F+A +SHEIRTP+ +IG +E++ + Sbjct: 605 QVQDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLT 664 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P EYA I SG +L I+ND+LD SKIE+G+++L P + + V E +SL+ Sbjct: 665 P----EQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLA 720 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A+ K + + +P I D ++Q+ N++ NAI FT G ++++S + + E Sbjct: 721 PRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEG-EVVVSASLSKEE 779 Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 E+ V+D+G+G+ + + + F Q S R GTGLGL ++ Sbjct: 780 KKKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAIS 839 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807 + +V+ G+ + S+P +G+ Sbjct: 840 RQLVEMMGGEIGLKSSPKEGSTFHFS 865 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 43/508 (8%), Positives = 131/508 (25%), Gaps = 48/508 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + + G + + +G ++ +P I + ++ + W G+ Sbjct: 27 DEDGRISFWNRSAERLYGWSSSEALGRNARELLKTRSGEPLEEIEERVRSEGAWEGELRQ 86 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G P+ + + + F L+ E Sbjct: 87 HARDGR----PLVVECRWVRAGAGNIVEFS-----RDTAERQKAEEYRSVLEAIEDGYFE 137 Query: 210 IKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSE 265 + + I + + Y +++ K + + + Sbjct: 138 TDLAGNLTFANQALGRILG-------YPASRLLGKNSRQYMDRENARKVHEAFKEVYATG 190 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 ++ + + + +++ S + + +E + Sbjct: 191 RAARGLVWEMIPRTGSPRCVEGSVSLIRDGSGRPCGFRGILRDITERLRMEERLRSSEAE 250 Query: 326 VDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + + G PS + + G + P Sbjct: 251 LRALFAAIDDIVLKLDREGRCLDIAPSNPSPLYRPGREMV----GRNVREIFPVDEKEPL 306 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + V A + ++ P + + + Sbjct: 307 LDSVRRVLQTGRPAAMECSMQLGYR--RLYFDVSISPEGEGAA-------VLVARDVTRE 357 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKP--F 497 R+ ++++ + ++E + + G L + V ++ GYP + + P + Sbjct: 358 RLAEQELRRAEERYRRLIEQIPGIVYTEDARTGETLYDSPRVEEILGYPADTYRKDPNYW 417 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 + ++ L + +++ +R +P Sbjct: 418 QKIIHPEDRELLRALEERASREGK---LSAEYRVFAADGRVVWVREEGALIPGEEGRPDV 474 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + DI+E K+ + L +++ + Sbjct: 475 WQGIILDITERKRAEQALHESEQRFRRA 502 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 30/275 (10%), Positives = 82/275 (29%), Gaps = 25/275 (9%) Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + ++ G + + N S L + S + + Sbjct: 9 DAREKRLLEFSHDAVLARDEDGRISFWNRSAERLYGWSSSEALG---------------- 52 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + R+ ++ + + E Sbjct: 53 ----RNARELLKTRSGEPLEEIEERVRSEGAWEGELRQHARDGRPLVVECRWVRAGAGNI 108 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 V+ + + + + S+LEA DG + G + N+A+ ++ GYP +L K Sbjct: 109 VEFSRDTAE-RQKAEEYRSVLEAIEDGYFETDLAGNLTFANQALGRILGYPASRLLGKNS 167 Query: 498 TVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554 ++++ ++ E+ + + L + T + + + + + + Sbjct: 168 RQYMDRENARKVHEAFKEVYATGRAARGLVWEMIPRTGSPRCVEGSVSLIRDGSGRPCGF 227 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DI+E + + +L ++ + D + Sbjct: 228 RGILRDITERLRMEERLRSSEAELRALFAAIDDIV 262 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 12/194 (6%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +LE + D + + +G I NR+ +L+G+ + L + L+ + + + Sbjct: 15 LLEFSHDAVLARDEDGRISFWNRSAERLYGWSSSEALGRNARELLKTRSGEPLEEIEERV 74 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 S E ++ + L + + + D +E ++ + + Sbjct: 75 RSEGA---WEGELRQHARDGRPLVVECRWVRAGAGN-IVEFSRDTAERQKAEE--YRSVL 128 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGF-SEVIK----NQRFGPLGNPRYIEYANYID 631 A ++ ++D ++ L I+G+ + + Q + E + Sbjct: 129 EAIEDGYFETDLAGNLTFA-NQALGRILGYPASRLLGKNSRQYMDRENARKVHEAFKEVY 187 Query: 632 RSGNLVLDIVNDLL 645 +G +V +++ Sbjct: 188 ATGRAARGLVWEMI 201 >gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 1192 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 214/632 (33%), Positives = 337/632 (53%), Gaps = 27/632 (4%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 +D L D+ + K S +KE D+ + +P Sbjct: 569 RHDIEELQSPADQADQVDQDDLKNASLEDKENPDLQLEAAPGGQGEEVRPELEADAPRQS 628 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 K + T E++ + + + +Q + + E Sbjct: 629 KAAGGEASDPVPDTEAHFEQEEEQTYREPEETEDSLQQAASGSK-EQGPAAEPDETVPQR 687 Query: 310 SL----------SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + + P+P ++S L YAN F LT Y + + Sbjct: 688 RSQIAYLPSAFHRPEAERKQTEAETILAHLPLPVLIHSGDRLHYANREFYRLTGYADLAE 747 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 +E AGGL L + P + N+ K ++L +D T A L ++ W+ +L + P Sbjct: 748 LESAGGLGALFEEP-AAGNSPKKTLLLRMADGTDRPVEAHLQSVAWDGRKALMLALHPAM 806 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 +A PE + + ++ +I++ +DGIA+I +G I S NR Sbjct: 807 QAEPTPEEAAKAAELE-------------ARLSEMRAIVDTATDGIAVIGNDGTIRSINR 853 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEK 537 LFG+ E++ KPF+ + + YL + + L + +G + + Sbjct: 854 PAEALFGFDAENVTGKPFSSLFAIESQRTVQDYLAGLSDNGVASVLNDGRQVIGRESQGR 913 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L + I +LP S Y + DI+ WK+ + L+ A+ AE+ SS KS+FLARVSHEIR Sbjct: 914 FIPLFMTIGRLPNGSGYCAVLRDITHWKRAEEDLTQARAQAERASSQKSEFLARVSHEIR 973 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AIIGFSE++ +++FGP+GN RY +Y I+RSGN VLD+VNDLLDISKIE+G+ + Sbjct: 974 TPLNAIIGFSELMIDEKFGPIGNDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEM 1033 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E V L++ +++ I+++Q AN +R++IR+S A+ +P ++ADLRSV+QIA+N+LSNA+ Sbjct: 1034 AHEAVPLNDTLAQVIAMMQPQANRERVIIRSSLASRLPDVVADLRSVRQIAINLLSNAVR 1093 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +TP+GGQ+++ST + + V+LRVRDTGVGM++ EL++A+KPF QI ++ RG+GTGLG Sbjct: 1094 YTPAGGQVVVSTVYERDGSVVLRVRDTGVGMSSAELDEALKPFRQINALRRKRGDGTGLG 1153 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LPL +AMV+AN +F I STP +GTL+EIIFP Sbjct: 1154 LPLTRAMVEANRAQFSIASTPGEGTLVEIIFP 1185 Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 101/585 (17%), Positives = 185/585 (31%), Gaps = 88/585 (15%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 E E + + H+ Q+ S + D RTVRF+W DA G Sbjct: 233 EKEALEAGSAAHEGSAGREKPLAPQDHTSRPHEPDERTA------SRTVRFSWRTDAQGR 286 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 IS+E + +G A +IG +VS+ +D + I LL R++TW G+T +WP+EG Sbjct: 287 FSSISDEFAQAMGRNATDVIGRTFREVSNAFGLDADGSISRLLDRRDTWSGRTVMWPLEG 346 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--------- 205 TNL VP+DLAALPIY R R F GFRGFGI + + DP A+G L Sbjct: 347 TNLKVPVDLAALPIYGRGRVFEGFRGFGIARLGEAELDPEAIGTVLAPSSRGNTHATTPV 406 Query: 206 --HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + SV+++K P K +S + + + Sbjct: 407 SEEQEPHRPSDFSVDQDKSATSDPVKADPF--QGEKPASGRAAEPQSEPKIVRLAEHRES 464 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + SL E + + ++ G L KE + + + + Sbjct: 465 TWDGSLSASERTTFREIGERLRRASEGRLDAEDKEGKKSADRPLNGRAVESTQDELPNST 524 Query: 324 ETVDKCPIPF----FVYSHGNLFYANPSFLLLTKYKS-VDDIEIAGGLSTLL-------- 370 ++ P+ + NP+ +++ + V+ + L Sbjct: 525 TLAEEGPLAQGNGELDDGAEEEVFENPANENVSQPTAMVEADGSRHDIEELQSPADQADQ 584 Query: 371 ---------------------------DAPKLSDNNAIKPVMLYRSDRTCIA-------- 395 ++ ++ + Sbjct: 585 VDQDDLKNASLEDKENPDLQLEAAPGGQGEEVRPELEADAPRQSKAAGGEASDPVPDTEA 644 Query: 396 --ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-----TRINKRKME 448 T + E ++ Q P P + + ++ + E Sbjct: 645 HFEQEEEQTYREPEETEDSLQQAASGSKEQGPAAEPDETVPQRRSQIAYLPSAFHRPEAE 704 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + + +IL + I + + + NR +L GY E + Sbjct: 705 RKQTEAETILAHLPLPVLIHSGD-RLHYANREFYRLTGY----------ADLAELESAGG 753 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + E + + + K L + + ++ + + Sbjct: 754 LGALFEEPAAGNSPK---KTLLLRMADGTDRPVEAHLQSVAWDGR 795 Score = 38.1 bits (87), Expect = 6.3, Method: Composition-based stats. Identities = 22/258 (8%), Positives = 57/258 (22%), Gaps = 14/258 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I G ++ I+ G A + G + I+ + D L + G + Sbjct: 842 IGNDGTIRSINRPAEALFGFDAENVTGKPFSSL---FAIESQRTVQDYLA-GLSDNGVAS 897 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHL 207 + + +P++ G+ ++ + + Sbjct: 898 VLNDGRQVIGRESQGRFIPLFMTIGRLPNGSGYCAVLRDITHWKRAEEDLTQARAQAERA 957 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 K + + M ++ ++D + + Sbjct: 958 SSQKSEFLARVSHEIRTPLNAIIGFSELMIDEKFGPIGNDRYRDYLRDINRSGNHVL--D 1015 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + D I Q L + + + + E + Sbjct: 1016 LVNDLLDISKIEAGQQEMAHEAVPLNDTLAQVIAMMQPQ-------ANRERVIIRSSLAS 1068 Query: 328 KCPIPFFVYSHGNLFYAN 345 + P N Sbjct: 1069 RLPDVVADLRSVRQIAIN 1086 >gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242] gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242] Length = 883 Score = 462 bits (1189), Expect = e-127, Method: Composition-based stats. Identities = 208/733 (28%), Positives = 333/733 (45%), Gaps = 30/733 (4%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 R RF W DA G +I+ L +G + ++G + +V+ +D + + + Sbjct: 171 GARAPRFLWKTDAVGRFIDITHVLADVVGEESADILGRPVDEVARSFSLD--SALTQAIA 228 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 Q +W G WP+E + VP+ L ALP +R F+GF+G+G++H++R P Sbjct: 229 AQKSWSGVDVDWPLENLSERVPMTLGALPTTDSDRRFAGFQGYGVLHLSRAYVAPGQQAG 288 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + E++ + V L A + Sbjct: 289 AGAAPPPEKEKPPPSAPAPERDDIGY-----------RADNVVPLRPSAATPRIEEPRDP 337 Query: 259 YPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 T E + + GT + +E+ + + D Sbjct: 338 AADATLTASEQSAFDEIARALLAGDASGDDAAGTPADALEETESAPAEAEPAAAPRARD- 396 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E +D+ P+ + + + N + L Y + GGL+ + + Sbjct: 397 --RTVEEVLDRLPVGVLIARGADTLFVNRTLLDYLGYADRAAFDTYGGLARMFFGRGPGE 454 Query: 378 NNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 N P + SD + L T++W E + +T + P+ Sbjct: 455 PNGHAGPAAVQSSDGERLDVDVHLQTLEWEGEAATLLTLRRNHHRPRGPD----ESALAL 510 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + ++ L ++LE+ IAI+ +G+I S + LFG P Sbjct: 511 AREMEARLARVRANNNLLRAVLESDGSAIAIVCDDGLIESATAGFAALFGAETGAFDGLP 570 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + ++ + S + T T + + + +++LP + Sbjct: 571 LASLFAAQEGRTIAGLISRVKSE------QNETARLTARARGVPIEASLQRLPVGAGKIC 624 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + ++L A+ AE S+ KSDFLARVSHEIRTPL AIIGF+EV+ +RFG Sbjct: 625 VRLKEPAADRRNDELEAARVAAEHASAAKSDFLARVSHEIRTPLNAIIGFAEVMMEERFG 684 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+G+ RY EY + SG VL +VNDLLD+SKIE+GK+ L FE V + +SE +S++Q Sbjct: 685 PIGSERYKEYLKDVHASGTHVLSLVNDLLDLSKIEAGKLELSFERVDANAIISECVSIMQ 744 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 AN+ R+++R + A +P I AD RS+KQI LN+LSNA+ F GGQ+I+ST T Sbjct: 745 TQANQGRVVVRLALAQRLPPIRADERSLKQILLNLLSNAVKFNEPGGQVIVSTALTEAGY 804 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V++RV+DTGVGM++ E+E A++PF QI + + GTGLGLPL KA+++AN F I S Sbjct: 805 VVIRVKDTGVGMSDDEVETALEPFKQI--ATSRKVRGTGLGLPLTKALIEANHASFTIKS 862 Query: 797 TPAKGTLIEIIFP 809 +GTLIE+ FP Sbjct: 863 RKNEGTLIEVAFP 875 >gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4] gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4] Length = 1410 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 231/651 (35%), Positives = 328/651 (50%), Gaps = 30/651 (4%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + A + D + + K D + S N S A Sbjct: 753 DASADHATPEATDTTVPSPRAERDSLPENDNTKPDPDTDLSASQASEKANAEVSDESTSA 812 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D L E + N+ + Sbjct: 813 EDGDDLTDVVSEQEGDELDETVVDFPAPSAGDEVSANTNDDAEDGKNAADEMILPVASVP 872 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 +L +P+ +D P+ + L +ANP FL LT Y +D + +GGL Sbjct: 873 GALLPRPPRDVVFSPDVLDMLPVALLAHRGDTLIHANPEFLALTGYADLDALAQSGGLDA 932 Query: 369 LLD-------------APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 LL P D +++ R+D + SARL +I+W ++L + Sbjct: 933 LLQRDDVVQGDNPQDDQPGTGDARRDGRLVVVRADDALVPVSARLQSIRWEEASALLLAL 992 Query: 416 IPFEKANQFPENMP--------------QNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 +P + Q G++ + + IEV +L SILE Sbjct: 993 VPQAATKPSEAVIADHTPRSVADAGDSSQPGLDHPTRLDAVEHTGLRIEVEELRSILETA 1052 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +DG+ I+ +G I + N A S LF Y +DI KPF + + YL + + Sbjct: 1053 TDGVVTISTDGEIRTVNGAASALFNYDEDDIRGKPFVTLFAHESQRAILDYLGGLTGHGV 1112 Query: 522 RQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 L + +G + L + I +L S+ + + DI++WK+ + +L AK+ AE Sbjct: 1113 ASVLNDGREVIGRESSGGFIPLFMTIGRLSSSNGFCAVIRDITQWKRTEEELRSAKRAAE 1172 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 ++HK+DFLARVSHEIRTPL AIIGF++++ ++RFGP+G+ RY EYA I RSG VLD Sbjct: 1173 TANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPIGHGRYAEYAADIGRSGRHVLD 1232 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 IVNDLLDISKIE+G+M+L F V L+E VSEA+++VQ AN +R++IRT+ + ++P ++A Sbjct: 1233 IVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQANGQRVIIRTALSQSVPNVVA 1292 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D+RS+KQI LNILSNAI FTPSGGQII+ST + N V LR+RDTG+GMT ELE+AMKP Sbjct: 1293 DMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVTLRIRDTGIGMTRAELEQAMKP 1352 Query: 760 FGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q+ RG+GTGLGLPL KAMVDAN F I STP +GTL+EI FP Sbjct: 1353 FRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQSTPNEGTLVEITFP 1403 Score = 161 bits (407), Expect = 6e-37, Method: Composition-based stats. Identities = 91/525 (17%), Positives = 175/525 (33%), Gaps = 41/525 (7%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 ++E F F P R RF W +DA G E+S E K +G + + G D++ + ++D Sbjct: 472 NTEEDFAFAPTMRAARFVWKVDALGCFSEVSPEFGKAVGPRSAAIEGQTFADLAALFNLD 531 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 P+ I +LLK+++TW GKT WPIEGT+L VP+DLAALP Y+RNR+F GFRGFG+V + Sbjct: 532 PDGKIVELLKKRDTWSGKTIYWPIEGTSLKVPVDLAALPTYTRNRDFDGFRGFGVVRLAD 591 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLT 244 D +G L + ++ + +E + +P + + Sbjct: 592 CIEDTDKVGLTLSTPLNQTGTTEQAAQADPQEDMRDDAPAAPAEVEKADTIPAPERVEEQ 651 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 E + L L E+ + + + F + + Sbjct: 652 EPEREEVPALVISAPAPLPQAENIVQLKPRHFGREGLSPAEHATFQEIARRLDALGAKSA 711 Query: 305 HRNHPSLSAY--FDEGENLTPETVDKCPIPFFVYSHGN------LFYANPSFLLLTKYKS 356 + S D G + D+ P P + +A P T Sbjct: 712 DGSRDLSSKKGHTDTGRDDKATVEDQNPSPVDAANAETQTPDASADHATPEATDTTVPSP 771 Query: 357 VDDIEIAGGLSTLLDAPKLS---------------------DNNAIKPVMLYRSDRTCIA 395 + + P ++ ++ + + Sbjct: 772 RAERDSLPENDNTKPDPDTDLSASQASEKANAEVSDESTSAEDGDDLTDVVSEQEGDELD 831 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + A T E + M R + Sbjct: 832 ETVVDFPAPSAGDEVSANTNDDAEDGKNAADEMILPVASVPGALLPRPPRDVVFSPD--- 888 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYL 513 +L+ + + ++ N L GY D L + L+++ ++ Sbjct: 889 -VLDMLPVALLAHRGD-TLIHANPEFLALTGYADLDALAQSGGLDALLQRDDVVQGDNPQ 946 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + + ++ + ++ L+ + ++ + + +L + Sbjct: 947 DDQPGTGDARRDGRLVVVR-ADDALVPVSARLQSIRWEEASALLL 990 >gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein [Hoeflea phototrophica DFL-43] Length = 1325 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 231/650 (35%), Positives = 339/650 (52%), Gaps = 14/650 (2%) Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSP 230 E + FR G + +D +A +F + S V + D + Sbjct: 671 AGEQAAFREIGARLSDAGGSDDKADETGEPPRFGKRQPPLEADSDVRDIEVDFDGKAHTA 730 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + VS E D E +E S D + Sbjct: 731 DGIRSAGDAVSRDDEASFEDDARADLEDSSATAAEASEQTTGID--AARDEASATDERST 788 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + +L L +D P P V++ L +ANP FL Sbjct: 789 EGREAEDAPVPATPWPSAFALPPRQVMHAGLNASLIDAIPSPLLVHAADTLIHANPEFLE 848 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 LT Y S++ + AGGL LL+ + + R D SARL ++ W ++ Sbjct: 849 LTGYGSLEALSEAGGLDHLLERSGDDGQLEDGSLTVRRGDGASRKVSARLRSVNWGDAHA 908 Query: 411 LAMTFIPFEKANQFPENMP-----QNGIEPEDVDTRINKR----KMEIEVMQLCSILEAT 461 L + P ++ + I D+D + + IE +L SILE Sbjct: 909 LLLALAPATESAPEADQAESPAPVAQLIATNDMDIDPAQAGSSDALAIEAEELRSILETA 968 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +DG+ I++ +G I S N + LF Y D L +PF + + + Y++ + + Sbjct: 969 TDGVVILDNDGTIRSMNGSAFALFNYDEHDTLHQPFAMLFAHESQRAVMDYISGLAEHGV 1028 Query: 522 RQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 L + +G L L + I +L S+ Y + DI++WK+ + +L AK+ AE Sbjct: 1029 SSVLNDGREVIGREASGGFLPLFMTIGRLSRSNGYCAVLRDITQWKRTEEELRTAKRDAE 1088 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 +SHKSDFLARVSHEIRTPL AIIGFSE++ +RFGP+G+PRY+EYA+ I SG VLD Sbjct: 1089 TANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGPIGSPRYLEYAHDIGNSGKHVLD 1148 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 IVNDLLDISKIE+G++++ F VSL++ ++E++SL+Q AN +R++IRTS + ++P ++A Sbjct: 1149 IVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQPMANSQRVIIRTSLSESVPDVVA 1208 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D RSVKQIALN+LSNAI +TPSGGQI++ST++ + V++R+RDTG+GM ELE+AMKP Sbjct: 1209 DQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNVVIRIRDTGIGMNRKELEQAMKP 1268 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 FGQ+ + RGEGTGLGLPL KAMV+AN +F I S +GTL+ I FP Sbjct: 1269 FGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSAAGEGTLVSIAFP 1318 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 99/557 (17%), Positives = 182/557 (32%), Gaps = 57/557 (10%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 +T + H+ + + + D+E F FDP + RF W ID G Sbjct: 367 DTADTDARPWEHEQATALPSQPAD-PAKTPNKAGDAE--FRFDPNAKPTRFVWKIDRGGA 423 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 E+S E +G A +IG + D++++ ++DP++ I + L R++TW GKT WPI+G Sbjct: 424 FSEVSAEFAAAVGPNAADIIGRKFPDIANVFNLDPDHVIIEALNRRDTWSGKTVFWPIQG 483 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--------- 205 TNL P+DLAALP Y+R+R+F GFRGFGIV DP A+G L Sbjct: 484 TNLVTPVDLAALPTYTRDRQFDGFRGFGIVRSGETRTDPEAIGLALSPGAPVSTSPHQDT 543 Query: 206 -HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR----------------MKNKVSSLTEYYA 248 E + D +++ R + S Sbjct: 544 DAEAETDQAELLDIDGAVDAETEEDLADLARLDGADPATIGHSDAPDAPDVQDSEVPSAE 603 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + ++ P S + + + + + + ++ NS + + + R Sbjct: 604 TVTESPESADAPEDASTDVADADIDADDPFRGEKPAIRLVETPMRRNSDKVIDLQTRRER 663 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD---------- 358 + + + E + + P F D Sbjct: 664 SARESLSAGEQAAFREIGARLSDAGGSDDKADETGEPPRFGKRQPPLEADSDVRDIEVDF 723 Query: 359 ---DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 G S + + + D + AA A T + A Sbjct: 724 DGKAHTADGIRSAGDAVSRDDEASFEDDARADLEDSSATAAEASEQTTGIDAARDEASAT 783 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + E+ P ++ M + S+++A + + + ++ Sbjct: 784 DERSTEGREAEDAPVPATPWPSAFALPPRQVMHAGLN--ASLIDAIPSPLLVHAAD-TLI 840 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N +L GY + L + + +L E S D Q + + Sbjct: 841 HANPEFLELTGYGSLEAL-----------SEAGGLDHLLE-RSGDDGQLEDGSLTVRRGD 888 Query: 536 EKLLSLRIIIKKLPFSS 552 + ++ + + Sbjct: 889 GASRKVSARLRSVNWGD 905 >gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472] gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 1480 Score = 459 bits (1180), Expect = e-126, Method: Composition-based stats. Identities = 133/758 (17%), Positives = 265/758 (34%), Gaps = 68/758 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA + + +G ++IG++ ++ + I + + +W G+ Sbjct: 388 VDAEDRVTYANPAYTALMGYSRDELIGIQANQLAPGADQAERDIIKQKILTEGSWSGELA 447 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G + +P+ +A ++ + G+ +V + L +K L Sbjct: 448 RLDSQGRS--IPVYASAAALHDQAGTLEGY----VVTYAD--------LRPLQEKSLALA 493 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP----HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E + + +V D P R +++ ++ K + + Sbjct: 494 ESQARYQTVLDHAADAVFIADPAGRYLYANRQASQLLGYSQQELLKLSIADITPPEDAGN 553 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGEN 320 + + K++ G + + +E Sbjct: 554 AARAFQSLLAGSHVTAELLLKRKDGGQVPVEINAIQLPDGTFYGACRDIAERKRTEEEIR 613 Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V++ P + + Y N +F+ T Y + I G L A + + Sbjct: 614 KLSLVVEQSPESIMITDRQARIEYVNDAFVRKTGYSPDEVI----GRDPSLLASGKTPKS 669 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + D + L + ++ + + Sbjct: 670 TYEDLWRQLQDGQSWKGEFHN---RCKDGRELVELARIAPIREKDGRISHYLALQEDITE 726 Query: 440 TRINKRKMEIEVMQLCSIL---------------------EATSDGIAIINRE-GIILST 477 + +++ +L ++ ++ GI I+ + G + Sbjct: 727 KKRLGLELDNYRHRLEELVEARTAEVREAHARLQITQFAMDSVGIGIQWIDPDSGRFVYA 786 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NR ++L GY +++L + + + + Q +I T+ Sbjct: 787 NRHTAELLGYSEQEMLTLTVSDIDPAFPLPAFHATMARLRQSRYTQFQSQI---ETRGGV 843 Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + I + + + + DIS K+ + L AK+ AEK + K+ F+A +S Sbjct: 844 PIPVEITLYYMEGDADAPARVIAFLTDISRRKETEQTLVQAKEAAEKANLAKTAFVANMS 903 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ AI+G ++ R + + IDRS +L+++ND+LD+SK + G Sbjct: 904 HEIRTPMNAILGMVYLLSQGRLSA----QQQHQLDTIDRSARHLLNLINDILDLSKADVG 959 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K+ L L ++ + LV A K + + + D + Q LN+LS Sbjct: 960 KLQLALSDFDLARLPADVMGLVADQAKAKGLQLSLQADAGPLPVRGDATRLTQCLLNLLS 1019 Query: 714 NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G +I IS + +E VRDTG+G+ + F Q S Sbjct: 1020 NAVKFTERG-RIAISLSIDGEDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTR 1078 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 R GTGLGL + K + + G + S P +G+L Sbjct: 1079 RYGGTGLGLAITKRLAELMGGAVGVESAPGQGSLFWFT 1116 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 70/641 (10%), Positives = 174/641 (27%), Gaps = 62/641 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D G + +G G+R D+ D +L + Sbjct: 17 DLDGRYLLANLGSQTLLGLPRVPEAGLRDHDLFPEAFADRLAAADRQVLSSGRPQEFEVL 76 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + ++ Y+ + P+ + + E + GI + D+ + Sbjct: 77 MEHLDPPRTYLSLKF---PLRAPSGEI--YAIGGIATDISERKRLESQISEHDELLRDMS 131 Query: 209 EIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 I + + + P N L+ Y + ++ + Sbjct: 132 AIARIGGWWFDPISGQGNWTAEVARIHDLPEAAPVNVEDGLSYYSGESRERIEAAVQAAI 191 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGE 319 + E E + + + + + + E E Sbjct: 192 RDGKPYDLELELI-SATGRRKWVRTLGRPQVRDGRVVKVRGAMQDISDRKQAELALRESE 250 Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 L V+ P ++ + +L + D + S P++ Sbjct: 251 ELLHLFVEHAPAALAMFDRQMRYLAVSRRWLRDYGLEGRDILGQ----SHYAVFPEIPP- 305 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + V D + L + P+ + + + Sbjct: 306 -AWRAVHRRGLDGEVVREEEALFIRANGDQQWQKWEVRPWRRRDGTIGGILIY------T 358 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + +++ E + L L + I +++ E + N A + L GY ++++ Sbjct: 359 EDITARKQAEKDKHWLAEALNQAAQPILMVDAEDRVTYANPAYTALMGYSRDELIGIQAN 418 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCY 554 + + +IL+ + + + + L Y Sbjct: 419 QLAPGADQAERDIIKQKILTEGSWSG---ELARLDSQGRSIPVYASAAALHDQAGTLEGY 475 Query: 555 SLTMHDIS--EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP----LTA------ 602 +T D+ + K S A+ + + + F+A P L A Sbjct: 476 VVTYADLRPLQEKSLALAESQARYQTVLDHAADAVFIAD-------PAGRYLYANRQASQ 528 Query: 603 IIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G+S+ + + P A +S + +LL + + + G++ + Sbjct: 529 LLGYSQQELLKLSIADITPPEDAGNAARAFQSLLAGSHVTAELL-LKRKDGGQVPVEINA 587 Query: 662 VSLDE-----AVSEAISLVQLYANEKRILIRTSFANNIPRI 697 + L + A + + +++ + + I Sbjct: 588 IQLPDGTFYGACRDIAERKRTEEEIRKLSLVVEQSPESIMI 628 Score = 103 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 36/388 (9%), Positives = 93/388 (23%), Gaps = 14/388 (3%) Query: 204 FSHLHEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + V+ Q+ R+ + + Sbjct: 2 LQSILDNSSAAIFVKDLDGRYLLANLGSQTLLGLPRVPEAGLRDHDLFPEAFADRLAAAD 61 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + S + ++ T L+ S E + S + Sbjct: 62 RQVLSSGRPQEFEVLMEHLD-PPRTYLSLKFPLRAPSGEIYAIGGIATDISERKRLESQI 120 Query: 320 NLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + E + + + + + + + + L S Sbjct: 121 SEHDELLRDMSAIARIGGWWFDPISGQGNWTAEVARIHDLPEAAPVNVEDGLSYYSGESR 180 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 V D L I T + + + G + Sbjct: 181 ERIEAAVQAAIRDGKPYDLELEL--ISATGRRKWVRTLGRPQVRD--GRVVKVRGAMQDI 236 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D + + + L +E +A+ +R+ L+ +R + +G DIL + Sbjct: 237 SDRKQAELALRESEELLHLFVEHAPAALAMFDRQMRYLAVSRRWLRDYGLEGRDILGQSH 296 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555 P L ++ + E + + + +++ + + Sbjct: 297 YAVF-PEIPPAWRAVHRRGLDGEVVREEEALFIRANGDQQWQKWEVRPWRRRDGTIGGIL 355 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS 583 + DI+ KQ + + + + Sbjct: 356 IYTEDITARKQAEKDKHWLAEALNQAAQ 383 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 37/439 (8%), Positives = 105/439 (23%), Gaps = 53/439 (12%) Query: 46 HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEELPK 104 + E T + + + +E+ + + + D G + + + Sbjct: 469 AGTLEGYVVTYADLRPLQEKSLALAESQARYQTVLDHAADAVFIADPAGRYLYANRQASQ 528 Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 +G +++ + + D++ L + + L +G VP+++ Sbjct: 529 LLGYSQQELLKLSIADITPPEDAGNAARAFQSLLAGSHVTAELLLKRKDGGQ--VPVEIN 586 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 A+ + + F G ++L S + E + + I Sbjct: 587 AIQL--PDGTFYGA-----CRDIAERKRTEEEIRKL----SLVVEQSPESIMITDRQARI 635 Query: 225 FSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NL 280 ++V K+ L + + +FH + Sbjct: 636 EYVNDAFVRKTGYSPDEVIGRDPSLLASGKTPKSTYEDLWRQLQDGQSWKGEFHNRCKDG 695 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----------- 329 + + ++ YL+ + + + +++ Sbjct: 696 RELVELARIAPIREKDGRISHYLALQEDITEKKRLGLELDNYRHRLEELVEARTAEVREA 755 Query: 330 ------------PIPFFVY----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + G YAN L Y + + L+ P Sbjct: 756 HARLQITQFAMDSVGIGIQWIDPDSGRFVYANRHTAELLGYSEQEML----TLTVSDIDP 811 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + R R + I+ + + + Sbjct: 812 AFPLPAFHATMARLRQSR----YTQFQSQIETRGGVPIPVEITLYYMEGDADAPARVIAF 867 Query: 434 EPEDVDTRINKRKMEIEVM 452 + + ++ + Sbjct: 868 LTDISRRKETEQTLVQAKE 886 >gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 995 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 145/760 (19%), Positives = 278/760 (36%), Gaps = 54/760 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD----ILHIDPNNHIGDLLKRQN 141 + +D+ ++ I+E + G +IG + + + D + LL + Sbjct: 259 IFILDSCFHVVWINEPMEDYFGIDREDIIGKDKRQLVEDKLKHIFEDSDEFANRLLATYD 318 Query: 142 ----TWYGKTTLWPIEGTNLYVPIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPR 194 + + P ++ + PI S + + Sbjct: 319 DNSYIENFECHVLPDSNREER-WLEHWSQPIKSGLYAGGRIEHY------YDITYRKIIE 371 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLT 244 + + + + I + R + V Sbjct: 372 QDLRTERDFIEKVADTSPICITKVDRNGYIVYANHAAEMVLGLSKSKIQERTYDDVKWKI 431 Query: 245 EYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + + L+ E + + + + ++ + Sbjct: 432 TDFDGNYYPQEELPFELVQKYLEPVYDVRHAIQWPDGQRKLLSINAAPIFDDYNRFDGLV 491 Query: 304 S----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 + E E +D PI FV + G NP+ +T Y + Sbjct: 492 AAIENISEKIEKERELKESEKKFRNYIDHSPIGIFVANKDGYYVDVNPAASSITGYTRDE 551 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + ++ + P+ + + S L I E + Sbjct: 552 LL----SMNLIDLHPQDVLEQIYQAYNYLVENGKT---SVELPFITKKSELRYFILDAVK 604 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ G + + + + +++ + +++E +D I + +G IL N Sbjct: 605 LSDDK------YLGFTTDITERKKVEDELKESEGRFRTVIEQAADAIIAHDFDGNILYVN 658 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 GY +++L + LS + T+ K+ Sbjct: 659 DLTCDNLGYTKDELLSMNLADIDPNIDTYEPRKRYWDKLS--YHSSYLIETVNRRKDGSE 716 Query: 539 LSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + L + DI+ KQ + KL +AK AE + KS+ LA VSHE+ Sbjct: 717 FPVEVKMTLMNLSGKPVILGFVRDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHEL 776 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT+IIGFS+VI ++ G L N Y + I +SG +LD++ND+LD++KIESGK+ Sbjct: 777 RTPLTSIIGFSDVILKRKVGDL-NDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLE 835 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 LH E +S+ +++ S + +A++K + + + NI I AD ++QI N++ NAI Sbjct: 836 LHREKISIPALLNDLESKLYPFASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAI 895 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT G + ++ ++ V DTG+G+ + ++ + F Q+ R GTGL Sbjct: 896 KFTNKGS-VTVTVRQKNDAY-QFSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGL 953 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GL L K +V+ + G+ ++ S +KGT P + P Sbjct: 954 GLALVKRLVEIHGGQIWVESEESKGTTFTFTIPSTKSELP 993 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 13/148 (8%) Query: 442 INKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++ K+ + + +I L+++ GI I++ ++ N + FG EDI+ K Sbjct: 232 ESENKLIEKEERHRTIVDDVLDSSKVGIFILDSCFHVVWINEPMEDYFGIDREDIIGKDK 291 Query: 498 TVFLE-------QNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLL-SLRIIIKKL 548 +E +++ N L + E + S +EE+ L IK Sbjct: 292 RQLVEDKLKHIFEDSDEFANRLLATYDDNSYIENFECHVLPDSNREERWLEHWSQPIKSG 351 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKK 576 ++ +DI+ K + L + Sbjct: 352 LYAGGRIEHYYDITYRKIIEQDLRTERD 379 >gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 1749 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 190/638 (29%), Positives = 322/638 (50%), Gaps = 30/638 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V + +++ A F + V++ + ++ + H + ++ Sbjct: 1122 QVGQSESETDADDVVSGDNFETDQDNDAPIDPVDEAEDELDFFKETAAHKETDEEAEAVA 1181 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + L + + L+ + S+L + + + + + + E Sbjct: 1182 DQDTAEIIPLVSARPHLVPVDTSNLSRPD----LAAFKTIAEALGARFEGDIAGFDELDM 1237 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 L + + P+ +D+ PI + ++ +AN + L + Y + + AG Sbjct: 1238 LDPEGILPPETEPSGPIDPDLLDRLPIGIAIARDRDVLFANETLLSVLGYPTHRHLTEAG 1297 Query: 365 GLSTLLDAPKLS--------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 GL L + + R+D + + AR+H++ WN L ++ + Sbjct: 1298 GLEALFAEEDEDSFPDAEGMEGTVDGTLKARRADGSLLPVDARMHSVPWNGGQGLMISIV 1357 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 P ++ + + ++ +L +ILE +DG+ +++R G+I+ Sbjct: 1358 PRAAEAVASGSVSS-----------TELQAAQTQIAELDTILETATDGVLVLDRNGVIIK 1406 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK 534 NR+ LF D++ P +L + YL ++ + L + LG K Sbjct: 1407 ANRSAEALFNANRADMIGVPLFDYLAPESHRGATDYLDGLVRNGVASVLNDGREVLGLLK 1466 Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 L+ L + I ++ + + DI++WK + +L+ AK+ AE +S KSDFLA+ Sbjct: 1467 SGGLIPLFMTIGRINHDGEDRKFCAVLRDITQWKTAEEELTQAKRQAENANSQKSDFLAK 1526 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL AIIGFSEV+ ++RFG +GN RY EY I SG+ ++ ++NDLLD+SKIE Sbjct: 1527 ISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEYLKDIRTSGSHIMSLINDLLDLSKIE 1586 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK++L F VS+ + V+E ++++Q AN +R++IR S +++P ++AD RS++QI LN+ Sbjct: 1587 AGKLDLQFTAVSIKDIVNECVAIMQPQANRERVIIRASLPDSVPNVVADPRSLRQIVLNL 1646 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNAI F SGGQ I+ST EV+LRVRDTG GM+ +L A++PF Q+ G Sbjct: 1647 LSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGTGMSAKDLSAALEPFRQLH--TARHG 1704 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGLPL KA+V+AN F I STP +GTL+EI FP Sbjct: 1705 SGTGLGLPLTKALVEANRASFRIDSTPDQGTLVEISFP 1742 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 99/271 (36%), Gaps = 2/271 (0%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 N ++ + ++ FVF R VRF W +D +S+E +T+G + ++G Sbjct: 347 APNTDASPDPLSSSDDDGFVFQQKRRPVRFAWKMDLEQRFTFVSDEFGQTLGPSSTDILG 406 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 +V ++ +D I L R++TW GKT WP+ G + VP+D+AALP + R+R+F Sbjct: 407 KTWAEVRELYGVDGRAKIAQALDRRDTWSGKTVYWPVSGEAVRVPVDMAALPAFDRDRQF 466 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 G+RGFG+ DP G + E + + + QQ Sbjct: 467 EGYRGFGVCRTADAKEDPD--GVFVPGAVFESAEAIERDTIDTTDADTFTDQQLDADADA 524 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + + AH+ + +E + +D T + Sbjct: 525 AGSASDHVETGEAHEVVETIASEGETSANETPPETQSDDTGTAAPLATAATAAAAGIGAM 584 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + + Sbjct: 585 VVGRSDAPASDQDAGETTVNAPDQTEIGDLA 615 >gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 1040 Score = 452 bits (1163), Expect = e-124, Method: Composition-based stats. Identities = 207/725 (28%), Positives = 329/725 (45%), Gaps = 23/725 (3%) Query: 102 LPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT-----WYGKTTLWPIEGT 155 L + G R D D I L +R+ + + + G Sbjct: 315 LKRISAEEPPAPFGRRDPDARPTPETSDRAEKIIRLEERRRSKDSHLSQSEEAAFRAIGE 374 Query: 156 NLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH------- 206 L + L I + +R F L+ Sbjct: 375 TLGDDDRIGGLEGAIRTASRRIGEFE--DEARDAEPIEVAPDANDDLELIDGPGAICAGD 432 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ + DI ++ + + + A + + E Sbjct: 433 EADEAALNADSGDQPDDIVTEARVSDDTDVSASLPEVPRGIAPAEQPSLPDVTAQAGDNE 492 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 +L + ++ + + + + + Sbjct: 493 PALAAPVEATVQPADKAAAEPAVTDGADEPADPVDADEDDTDEPELPDHAQLLADLATVY 552 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P+P V L Y N F LT Y + + AGGL+ L D V + Sbjct: 553 GCLPLPVLVQIRETLVYGNREFFDLTGYDDIPALAEAGGLARLFDGDD--RAAGSGEVAI 610 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 R +AA + + + L M+F + + P D Sbjct: 611 RRVTGETLAARSHMQRSTIAGRSCLVMSFFASPSLSAA--ALRSEPEVPPQGDAAETDAD 668 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + EV +L ++L A +DG+ +I+REG+I S NRA LFG +D +PF L + Sbjct: 669 LVAEVEELQAVLSAATDGVVLIDREGMIRSMNRAAHALFGIGADDAAGRPFVTLLAHESQ 728 Query: 507 SVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 ++ + + + + +G E + L + +LP + + DIS Sbjct: 729 KPTLEHIETLRTASATAPRDDGREVIGRVAEGGFVPLSVSFGRLPEERGWCAVIRDISRA 788 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L A+ AE S KS FLA VSHE+RTPL AIIGF++VI + FGP+GN RY+ Sbjct: 789 KRVEQELIKARSEAEAASLQKSQFLANVSHELRTPLNAIIGFADVIATECFGPIGNERYL 848 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + I RSG+ VLD+VNDLLDISKIE+GK+ L FE VSL+E + E ++L+Q AN +++ Sbjct: 849 EYLDDIKRSGHHVLDLVNDLLDISKIEAGKLELAFEAVSLNEVIGEVVALMQPQANREQV 908 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++R++ +++P ++AD RS++QIALN++SNA+ FTP+GGQII+ST+++ +V++R RD+ Sbjct: 909 IVRSNLPSSVPPVVADRRSMRQIALNLVSNAVRFTPAGGQIIVSTSYSPEGDVVVRFRDS 968 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ E+E AM PF Q+ + RGEGTGLGLPL KA+ +AN F + STP +GTL+ Sbjct: 969 GIGMSEDEIEIAMMPFQQVNPGNRRRGEGTGLGLPLTKALAEANRAGFAMSSTPGEGTLV 1028 Query: 805 EIIFP 809 EI FP Sbjct: 1029 EISFP 1033 Score = 195 bits (496), Expect = 3e-47, Method: Composition-based stats. Identities = 82/528 (15%), Positives = 168/528 (31%), Gaps = 23/528 (4%) Query: 36 TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHG 93 + ++ ++P + S +T + F+P VRF W ID+ G Sbjct: 128 SAPAQADSPPAAR-GTRPVLASDFRSYPDTGSAADGSGAPFEPRFDVAPVRFVWRIDSEG 186 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + +S E +G +I R +V++ +D + I LL +++TW G+T WP+E Sbjct: 187 RFRSLSPEFAAAVGPRFADVIDRRFEEVAEEYGLDADGDIRRLLAKRDTWSGRTLEWPVE 246 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 + VP++LAALP+Y+R+R F GFRGFGIV + P A+ + + Sbjct: 247 NSTRRVPVELAALPVYARDRSFDGFRGFGIVRLADAVEAPVAVAQEERVEEVAQERQDLT 306 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + S + PP ++ + T + + + + + + + +E Sbjct: 307 LEGGARALLKRISAEEPPAPFGRRDPDARPTPETSDRAEKIIRLEERRRSKDSHLSQSEE 366 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 G L+ + + + + A E + ++ P Sbjct: 367 AAFRAIGETLGDDDRIGGLEGAIRTASRRIGEFEDEARDAEPIEVAPDANDDLELIDGPG 426 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + + A + + + D + A + L + S Sbjct: 427 AICAGDEADEA--ALNADSGDQPDDIVTEARVSDDTDVSASLPEVPRGIAPAEQPSLPDV 484 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM- 452 A + + + + + + ++ ++ Sbjct: 485 TAQAGDNEPALAAPVEATVQPADKAAAEPAVTDGADEPADPVDADEDDTDEPELPDHAQL 544 Query: 453 --QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L ++ + + RE ++ NR L GY L Sbjct: 545 LADLATVYGCLPLPVLVQIRE-TLVYGNREFFDLTGYDDIPAL--------------AEA 589 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 L + D R + L+ R +++ + L M Sbjct: 590 GGLARLFDGDDRAAGSGEVAIRRVTGETLAARSHMQRSTIAGRSCLVM 637 Score = 40.0 bits (92), Expect = 1.7, Method: Composition-based stats. Identities = 17/180 (9%), Positives = 46/180 (25%), Gaps = 12/180 (6%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106 + Q + + + + V+ L + + D + ID G ++ ++ Sbjct: 655 EVPPQGDAAETDADLVAEVEELQAVLSAATDGVVL-------IDREGMIRSMNRAAHALF 707 Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 G A G + P + L+ + + + G + + Sbjct: 708 GIGADDAAGRPFVTLLAHESQKPTLEHIETLRTASATAPRDDGREVIGRVA----EGGFV 763 Query: 167 PIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 P+ RG+ ++ + + K + + Sbjct: 764 PLSVSFGRLPEERGWCAVIRDISRAKRVEQELIKARSEAEAASLQKSQFLANVSHELRTP 823 >gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1821 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 153/759 (20%), Positives = 290/759 (38%), Gaps = 57/759 (7%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID+ G + + + K G ++I + D++ + + + T++ Sbjct: 808 IDSETGAIADANWAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAKLEERTYFVFP 867 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G V + +A+ I R S I+H +++F + Sbjct: 868 HRL-ASGEIREVEVYSSAIEIQDRTFLVS------IIHDITERKQAERALHDSEERFRAI 920 Query: 208 HEIKK-GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK--YPL 261 E G + V ++ V + H DD + + L Sbjct: 921 FEQASVGIALVTPSSGELLRVNQRYCEITGYPESELVGRRVQDITHPDDREQNIEYLQQL 980 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317 ++ + S+ ++ + + + ++ + L+ + + A + Sbjct: 981 MSGKTSTYATEKRYIRNDGQYRWVYISISRVCDSEHKPNYALAVVEDISDRKATEAELRD 1040 Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI-------------- 362 E ++ V + G + N L Y + Sbjct: 1041 SEAKFRAFLESASEAIIVTNAQGEIIVFNAKAEDLFGYNRTEIFGRNIEYLMPPRYHSIH 1100 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + L P + + R D T L TIQ + + Sbjct: 1101 THHRADYLTHPSKRTMGKSQDLYAKRQDGTEFPIEVGLSTIQTKNGTFVIAFLTDITERQ 1160 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 Q + + + + ++ + I+E +GI + + +G N+A++ Sbjct: 1161 QAEHEIKRLN--------QKLESQIRETETRYAQIVELAEEGIWVTDVQGNTTYINQAMA 1212 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++ GY +IL FL + + L Q + TK + Sbjct: 1213 RMLGYTEVEILGHAIADFLPPGDNRFTSA---SSIPLHPNQVHRQEVELRTKSGNTIWAY 1269 Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFLAR 591 + + ++DI+E KQ + +L + + + + K +FLA Sbjct: 1270 MSTSPVLDDQGNLLWSCALVYDITERKQAEKQLRESNERISLANAELARATRLKDEFLAS 1329 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL AI+G +E ++ + +G L P+ + I++SG +LD++ND+LD+SKIE Sbjct: 1330 MSHELRTPLNAILGLAEALQEEVYGSLT-PKQHKSLATIEQSGKHLLDLINDILDLSKIE 1388 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 SGKM+L VS+D +++ ++ A +K I + A + I D R ++Q+ +N+ Sbjct: 1389 SGKMSLSVSLVSVDSLCESSLTFIKQQAQQKNIRLEYHIAPGLSEIEVDERRIRQVLVNL 1448 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 LSNA+ FTP GG++ + T + E + L V DTG+G+ L+K KPF Q+ +S R Sbjct: 1449 LSNAVKFTPDGGKVSLQVTTDPDGEKLQLSVTDTGIGIAPENLDKLFKPFVQLDSSLSRR 1508 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL L + +V+ G + S KG+ + P Sbjct: 1509 YAGTGLGLALVRRIVELQGGSIALESEVGKGSCFTVNLP 1547 Score = 178 bits (451), Expect = 4e-42, Method: Composition-based stats. Identities = 57/505 (11%), Positives = 147/505 (29%), Gaps = 27/505 (5%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTWYGKTTLW 150 S + +G + I L + S +H D + L+ + + + + L Sbjct: 686 VFFSPRWKEMLGYEEDE-IPNHLDEWSKRVHPDDLEWVMGLIQDHFDHKTSYYSSEHRLL 744 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ Y I ++ + R G A + + +F + E Sbjct: 745 CKDGS--YKWILDRGQALWDDQGKVV--RMVGSHTDISDRKAAEAALRDSEARFRAMFER 800 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-----VLKTEKYPLLTSE 265 K + + + + S L + ++ E E Sbjct: 801 SKAIKLLIDSETGAIADANWAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAKLEE 860 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + + +Q+ + + E Sbjct: 861 RTYFVFPHRLASGEIREVEVYSSAIEIQDRTFLVSIIHDITERKQAERALHDSEERFRAI 920 Query: 326 VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 ++ + + S G L N + +T Y + + + D+ Sbjct: 921 FEQASVGIALVTPSSGELLRVNQRYCEITGYPESELVG------RRVQDITHPDDREQNI 974 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L + + A N + + + + + D + Sbjct: 975 EYLQQLMSGKTSTYATEKRYIRNDGQYRWVYISISRVCDSEHKPNYALAVVEDISDRKAT 1034 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++ + + LE+ S+ I + N +G I+ N LFGY +I + + Sbjct: 1035 EAELRDSEAKFRAFLESASEAIIVTNAQGEIIVFNAKAEDLFGYNRTEIFGRNIEYLMPP 1094 Query: 504 NTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMH 559 S+ H+ + L+ ++T+ + ++ + + + + + + Sbjct: 1095 RYHSIHTHHRADYLTHPSKRTMGKSQDLYAKRQDGTEFPIEVGLSTIQTKNGTFVIAFLT 1154 Query: 560 DISEWKQEKNKLSHAKKIAEKESSH 584 DI+E +Q ++++ + E + Sbjct: 1155 DITERQQAEHEIKRLNQKLESQIRE 1179 Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 56/534 (10%), Positives = 136/534 (25%), Gaps = 55/534 (10%) Query: 86 TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNT 142 W+I A + +S G + + L Q T Sbjct: 548 VWSISATTDQVLYLSPATETVYGRLVQDFFDHPHLRLGVVHPDDYAQVSPFHQQLLAQGT 607 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + + +G + Y + R GI + ++ Sbjct: 608 YSLEYRIQRPDGEIR--WLYDRGRVTYDQQGHP--LRLDGIASDITDRKQAEDALRVSEE 663 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 ++ K + P + + + + + + + Sbjct: 664 RWHLALRGNSDGIWDWNVKTNDVFFS-PRWKEMLGYEEDEIPNHLDEWSKRVHPDDLEWV 722 Query: 263 TSEESS--------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310 + + + L ++ + + + + Sbjct: 723 MGLIQDHFDHKTSYYSSEHRLLCKDGSYKWILDRGQALWDDQGKVVRMVGSHTDISDRKA 782 Query: 311 LSAYFDEGENLTPETVDKC-PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 A + E ++ I + S G + AN + + Y I Sbjct: 783 AEAALRDSEARFRAMFERSKAIKLLIDSETGAIADANWAAVKFYGYSRSQLITKTITDLN 842 Query: 369 LLDAPKLS--------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L P++ + + I+ L Sbjct: 843 CLPLPQVQAEMKRAKLEERTYFVFPHRLASGEIREVEVYSSAIEIQDRTFLV-------- 894 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNR 479 I + + + +R + + +I E S GIA++ G +L N+ Sbjct: 895 -----------SIIHDITERKQAERALHDSEERFRAIFEQASVGIALVTPSSGELLRVNQ 943 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 ++ GYP +++ + + YL +++S T + + Sbjct: 944 RYCEITGYPESELVGRRVQDITHPDDREQNIEYLQQLMS-GKTSTYATEKRYIRNDGQYR 1002 Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + I I ++ S + + DIS+ K + +L ++ S+ + Sbjct: 1003 WVYISISRVCDSEHKPNYALAVVEDISDRKATEAELRDSEAKFRAFLESASEAI 1056 Score = 117 bits (293), Expect = 8e-24, Method: Composition-based stats. Identities = 56/468 (11%), Positives = 132/468 (28%), Gaps = 31/468 (6%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--SSLT 244 R R +RLD + L ++ S+ + + +++ L Sbjct: 524 LRTQVALRQNKQRLDSILNALDDVVWSISATTDQVLYLSPATETVYGRLVQDFFDHPHLR 583 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 H DD + + + + + + + Sbjct: 584 LGVVHPDDYAQVSPFHQQLLAQGTYSLEYRIQRPDGEIRWLYDRGRVTYDQQGHPLRLDG 643 Query: 305 HRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + + ++ ++ E + + ++ N + +P + + Y+ + Sbjct: 644 IASDITDRKQAEDALRVSEERWHLALRGNSDGIWDWNVKTNDVFFSPRWKEMLGYEEDEI 703 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 S D+ ++ + + H + + + Sbjct: 704 PNHLDEWSKR----VHPDDLEWVMGLIQDHFDHKTSYYSSEHRLLCKDGSYKWILDRGQA 759 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTN 478 + + + G + D + + + + ++ E + +I+ E G I N Sbjct: 760 LWDDQGKVVRMVGSHTDISDRKAAEAALRDSEARFRAMFERSKAIKLLIDSETGAIADAN 819 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A K +GY ++ K T P V L ++ E + Sbjct: 820 WAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAKLEERTYFVFPH--RLASGEIRE 877 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV---SHE 595 + + ++ + +HDI+E KQ + L +++ S +A V S E Sbjct: 878 VEVYSSAIEIQDRTFLVSIIHDITERKQAERALHDSEERFRAIFEQASVGIALVTPSSGE 937 Query: 596 IRTPLTA------IIGFSEVIK-----NQRFGPLGNPRYIEYANYIDR 632 + L I G+ E P + IEY + Sbjct: 938 L---LRVNQRYCEITGYPESELVGRRVQDITHPDDREQNIEYLQQLMS 982 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 47/421 (11%), Positives = 109/421 (25%), Gaps = 27/421 (6%) Query: 174 EFSGFR----GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 +F G+R GF H N P A L + Q Sbjct: 391 DFGGYRCAWIGFAQ-HDNAKTVRPVAQAGYEKGYVEALQISWGDNQRGTGPTGTAIRTQE 449 Query: 230 P-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P + + L A + + PL+ + + + Sbjct: 450 PRIIQNILTDPSYRLWRDAASQQGYAASIALPLIVEGTCLGALNIYASEPDAFDPAEVRL 509 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANP 346 L N+ L + + ++ + S + Y +P Sbjct: 510 LTELANDLAYGISAL------RTQVALRQNKQRLDSILNALDDVVWSISATTDQVLYLSP 563 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + D + ++ + + +L + + + IQ Sbjct: 564 ATETVYGRLVQDFFDHPHLRLGVVHPDDYAQVSPFHQQLLAQGTYSL------EYRIQRP 617 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + +Q + +GI + D + + + + + L SDGI Sbjct: 618 DGEIRWLYDRGRVTYDQQGHPLRLDGIASDITDRKQAEDALRVSEERWHLALRGNSDGIW 677 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 N + + + ++ GY ++I ++ + + + + + Sbjct: 678 DWNVKTNDVFFSPRWKEMLGYEEDEIPNHLDEWSKRVHPDDLEWVMGLIQDHFDH-KTSY 736 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEK 580 K+ + + L + M DIS+ K + L ++ Sbjct: 737 YSSEHRLLCKDGSYKWILDRGQALWDDQGKVVRMVGSHTDISDRKAAEAALRDSEARFRA 796 Query: 581 E 581 Sbjct: 797 M 797 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 4/162 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D G I++ + + +G +++G + D + L Sbjct: 1195 IWVTDVQGNTTYINQAMARMLGYTEVEILGHAIADFLPPGDNRFTSASSIPLHPNQVHRQ 1254 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L G + ++ P+ +V+ + +++ S Sbjct: 1255 EVELRTKSGNT--IWAYMSTSPVLDDQGNL--LWSCALVYDITERKQAEKQLRESNERIS 1310 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + + ++ E S + P + +L E Sbjct: 1311 LANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQEEV 1352 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 36/333 (10%), Positives = 93/333 (27%), Gaps = 26/333 (7%) Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 +++ E HT + TK + L+ + ++ P T Sbjct: 46 QTAQAETRLQHTQRVRLETKSLHSDLLEAETAVRG--YEITRRQDFLDRYESAIAQIPVT 103 Query: 326 VDKCPIPFF-----VYSHGNL-------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 +++ + + L L K E + L++ Sbjct: 104 LEQLRQLIAQEHAQAHRLQRIRELATARVSLLQRNLRLVDAKPETATESPEFIDQLVEGK 163 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ D + +++ +L + + Sbjct: 164 QVMDQVNDEIQQFQITEQQE---ETQLKQTLDQQRQFTGSILALSAIIGIGGSLLAAYLS 220 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + R+ + +++E +G + + N E L + + G + Sbjct: 221 YRLEHHLQKSDRRWRESEARYRAVVENFPNGAVLLFNHELRYLLADGSGLASVGLSKTLL 280 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L T + + ++L+ +T+ + +++ + + K Sbjct: 281 EGNTIQECLPPQTCTQLEPLYRQVLAG---ETVTQEMPF---GDRIFIIHGLPLKNQTGE 334 Query: 553 CY--SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + DI+E KQ + L HA + S Sbjct: 335 IIAGMVVAQDITELKQSEQALYHANRALRTLSE 367 Score = 41.6 bits (96), Expect = 0.58, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 67/284 (23%), Gaps = 17/284 (5%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI--FSQQSPPPHLRMKNKVSSLTEYYA 248 A + + E+ S+ + + ++ +++ + Sbjct: 108 RQLIAQEHAQAHRLQRIRELATARVSLLQRNLRLVDAKPETATESPEFIDQLVEGKQVMD 167 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 +D ++ + E + + G + Y + Sbjct: 168 QVNDEIQQFQITEQQEETQLKQTLDQQRQFTGSILALSAIIGIGGSLLAAYLSYRLEHHL 227 Query: 309 PSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + E E V+ P A+ S L S +E Sbjct: 228 QKSDRRWRESEARYRAVVENFPNGAVLLFNHELRYLLADGSGLASVGL-SKTLLEGNTIQ 286 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L + V+ + + R+ I NQ E Sbjct: 287 ECLPPQTCTQLEPLYRQVLAGETVTQEMPFGDRIFIIH------------GLPLKNQTGE 334 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + + + +++ + L ++ E + + Sbjct: 335 IIAGMVVAQDITELKQSEQALYHANRALRTLSECNQALVLATDE 378 >gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 1363 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 135/746 (18%), Positives = 253/746 (33%), Gaps = 42/746 (5%) Query: 86 TWNIDAHGYLKE--ISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQ 140 + +S + G +++G + L ++ + + + Sbjct: 339 VYRRRQDDRWSLEFVSSYAREITGYSDAELLGGKVSLRELVHPEDLPAVTANLRGVSSPG 398 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---- 196 + + L +G+ +V + + G + Sbjct: 399 QRYRLEYRLRHRDGSLRFVEEYGQCVRVTEGMPLLEGL-----LTDVTDRKHAEQAVQQV 453 Query: 197 GKRLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 +R F + E + + SP L V+ Sbjct: 454 QRRYQDIFERISEGIFQTSLDGRLLLANPALARMLGYASPEELLSEVQDVARQIYARPAD 513 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 D + L + + + Sbjct: 514 RDRYLRIMLEEGEVRDFELEAVRKDGEHIWLSISSRWLLDEARGMRIIEGTCQDITQRKR 573 Query: 311 LSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E L D PI V + G NPS + Y + + Sbjct: 574 AEEALRESMELFVSAFDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELLG------MT 627 Query: 370 LDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 D+ + + + D + A+ + + + Sbjct: 628 FQDITHPDDLELDLQHVRQVLDGEIAQYEMEKRYYHKHGSIVWAL-LSVSLVRDLDGQPL 686 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY- 487 + + +R + + ++EA D IAI+ ++G + N A +++ G Sbjct: 687 YFVSQIQDITQRKEIERAITESEERYRRLVEAFPDLIAIV-QDGRVAYVNPAGARMLGAK 745 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIK 546 ++++ + F+ + + I +E+ + E ++++ Sbjct: 746 DPQELVGRSVLEFVHPERRGEVAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPT 805 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DI+E ++ +L A+ A + S KS+F+A +SHEIRTPL AIIG Sbjct: 806 SHEDRPASQIIARDITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGM 865 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E++++ + R E+ I S +L I+ND+LD SKIE+GKM L L Sbjct: 866 TELLQDTPL----SERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVS 921 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 V ++ A K I + T IPR ++ D ++Q+ LN+LSNA+ FT G ++ Sbjct: 922 LVEGTSEMLAGAARGKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQG-EV 980 Query: 726 IIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ S E++ VRDTG+G+ + L K +PF Q S R GTGLGL ++ Sbjct: 981 LLRVLPHRAADSEVELLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTIS 1040 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807 K +V+ G + S P G+ Sbjct: 1041 KTLVELMGGTIWAESQPGVGSTFRFT 1066 >gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1093 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 140/760 (18%), Positives = 270/760 (35%), Gaps = 46/760 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144 W + G S+ +G + +V + + N W Sbjct: 211 IWICEPDGRNIYASDSFLNLVGMTQEQCSNFGWGEVLHPDDAEATIVAWQECSQSGNFWD 270 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + I+G + PI +P+ E + G + A + + + Sbjct: 271 REHRFRGIDGN--WHPILARGVPVRDEKGELLWWAGINL--DISSLKQTEAKLRESEAQL 326 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 +L + + + ++ + H DD Sbjct: 327 RNLADSAPVLIWMNNAEGGCEFVNKAYLKFFGESLEEIQGFGWSIHLHPDDAQPYLSAYE 386 Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFD 316 +E+ Q + +++ + Y+ + S Sbjct: 387 QAFNEQKPFRAQARIKRADGQYRWLDSRATPQFSSTGQFLGYIGSSSDISEIKEASEALR 446 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E E D P+ ++ + N +L ++ G + LL Sbjct: 447 ESEQRFKLLADNVPVLIWMDDEFQHRRFVNARYLQFAGISPEMLVQ---GWTDLLHPEDA 503 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + ++ + I + + G + Sbjct: 504 QQYLLKYKQAIAHKSEYRAVV-----RLRRHDGVYRWFEVIGLPRFEGDS-FVGYLGCKL 557 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVE 490 + + + + ++ + ++ D + + ++ G ++ N SK GY E Sbjct: 558 DITERKQAEEALQQREQRFSNLFNGMEDWVLVYHLTEEDQPGKLIEVNEQASKKLGYSRE 617 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--L 548 ++L + + + + L + + ++ TKE + + + + L Sbjct: 618 ELLSMSVKDIINPASVNPE----ASLKKLQSAKHIVVESVHITKEGQEIPVEVSATLFTL 673 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLT 601 DI+E KQ + + A++ AE + K +FLA +SHE+R+PL Sbjct: 674 NGLPTVQAICRDITERKQIEQEREQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLN 733 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G+++++KN L P + I+R+ L +++ DLLD+S+I GK+NL+ Sbjct: 734 PILGWAQMLKN---YELDQPTTQKALCIIERNARLQAELIEDLLDVSRILRGKLNLNTTS 790 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 VSL + A+ V+L A K I +RT + R+L D ++Q+ N+LSNA+ FTPS Sbjct: 791 VSLVVVIEAALETVRLAAQAKSIELRTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPS 850 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GGQ+ I V +RV+DTG G+T L F Q +S + G GLGL +A Sbjct: 851 GGQVEIELEQIHGG-VEIRVKDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIA 909 Query: 782 KAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPHDCI 820 + +V+ + GK + S +G + PL P+D + Sbjct: 910 RHLVELHGGKIWAESLGENQGATFIVNLPLLPQEFPNDTL 949 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 43/158 (27%), Gaps = 6/158 (3%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E+ I + ++ + + +I E GI I +G + + + L Sbjct: 172 ESDNLLAIIRNISQWKRSEAALRLNERLYRAIGETIDYGIWICEPDGRNIYASDSFLNLV 231 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G E + L + E ++ + + Sbjct: 232 GMTQEQCSNFGWGEVLHPDDAEATIVAWQECSQSGN--FWDREHRFRGIDGNWHPILARG 289 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 + ++ DIS KQ + KL ++ Sbjct: 290 VPVRDEKGELLWWAGINLDISSLKQTEAKLRESEAQLR 327 >gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator hybrid [Zunongwangia profunda SM-A87] Length = 1567 Score = 439 bits (1129), Expect = e-120, Method: Composition-based stats. Identities = 143/784 (18%), Positives = 292/784 (37%), Gaps = 56/784 (7%) Query: 60 ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119 E+ S N ++ F + P + + G ++ L K IG +++ M Sbjct: 398 EAESFKNASQFKSAFDYSPNGMAL-----VSLDGKWVNVNRNLSKMIGYTQEELLEMSFM 452 Query: 120 DVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 DV+ +D + + L +T+ + EG L+ + ++ N + Sbjct: 453 DVTYHEDLDKDLKLLSKLMAGEIDTYNMEKRYIHKEGHLLWGLLTVSLQ--KDENGKPLY 510 Query: 178 FRGFGIVHVNRVDNDPRA----LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 F ++ + + + L ++ S ++ Sbjct: 511 F--ISQINDITAAKEAQENINKSYRELQNMMDATTQVSIIESDLDGVIKKFNKGAENFFG 568 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT---------------- 277 + + + + H +K + L + + F Sbjct: 569 YKAEEMIEKEKFFIFHDKQEIKEREIELSKKYGEEIKGFDVFTAGPKIKDYESLEWTYIR 628 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPF 333 N ++ + ++N+ Y+ S E + + ++ Sbjct: 629 KNGERFPVQLVITAIKNSEGVITGYVGVATDISQLKAIQEELKKSEQRWQFALEGSGDGI 688 Query: 334 FVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + + N + + + ++ DD+ + L + Sbjct: 689 WDWFVDSNTQFLSLRAKEMLGFEETDDLTSVEEWDKRIHPKDLEKSEKALQDYFT---GK 745 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + E + + + + + G + + D +I +RK++ + Sbjct: 746 LPIYHVEKRIKCKDGEYKWILDRGKVVEWTEDKKPLRMIGTQSDITDRKIAERKIKENEV 805 Query: 453 QLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + S+ E + GI +I+ G + N+++ GY E+ + + + +++ Sbjct: 806 RFRSLYELSPIGIGLIDVENGTFIEANQSLITSSGYTKEEFTGISYRKIVPKEFIPLVSD 865 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK 568 +++ + + EK + K+ + K+ ++ T+ DI+ K+ + Sbjct: 866 KFKKVVLNEKVEAFEKSFI--KKDGTTFPALVNGAKIKDTNGKDIILATIQDITRRKEME 923 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 N L AK AE S KS+FLA +SHEIRTPL +IGF++++ N +Y Sbjct: 924 NSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTEL----NTSQKQYME 979 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + S N +LD++ND+LD SKIE+GK+ L E +++ E + I +V+ A+EK + + Sbjct: 980 TVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVKHKAHEKGLEVLL 1039 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVR 742 + + + R I D ++QI N+L NA+ FT G +I + E VR Sbjct: 1040 NISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKG-EIELRIEAGNKNTEHQREYTFIVR 1098 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ LE+ K F Q +S + GTGLGL ++ ++ K + S P G+ Sbjct: 1099 DTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDVQSEPGIGS 1158 Query: 803 LIEI 806 Sbjct: 1159 SFSF 1162 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 34/312 (10%), Positives = 99/312 (31%), Gaps = 18/312 (5%) Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYS--HGNL 341 FG + + + + + + D P+ + + Sbjct: 239 VFGNAEQEAGRTIRVYGAFQDITEQKLKENELKLTQSRFRDIFDNSPLGIILIDPKTNEV 298 Query: 342 FYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 ++AN S + +S+ +I+ + + + D I Sbjct: 299 YHANESAKKIFGLESLSSQEIQKFSFQNQIFEE----DFELISEKRKKLLQGKFDNYRIE 354 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + + + + + + ++ + + Q S + Sbjct: 355 -YRFYKDHGRIIWLQSFTSLLRAEDGSPRLIIAQVEDITLRKLLEAESFKNASQFKSAFD 413 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 + +G+A+++ +G ++ NR +SK+ GY E++L F L+++++ Sbjct: 414 YSPNGMALVSLDGKWVNVNRNLSKMIGYTQEELLEMSFMDVTYHEDLDKDLKLLSKLMAG 473 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 ++ T KE LL + + + + ++DI+ K+ + ++ + Sbjct: 474 EID-TYNMEKRYIHKEGHLLWGLLTVSLQKDENGKPLYFISQINDITAAKEAQENINKSY 532 Query: 576 KIAEKESSHKSD 587 + + + Sbjct: 533 RELQNMMDATTQ 544 >gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 176/635 (27%), Positives = 308/635 (48%), Gaps = 20/635 (3%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 FG+ D A ++ + E ++ P ++ Sbjct: 342 FGLGWTFCSDPADEAGEPASEEVPPREIPASPPPGPDAPGPGEAAAAAPSEAAPEAVKAP 401 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 L ++ +L + ++ + G + Sbjct: 402 ESAPEPAGRRPLAASQLSLNEHAAFREIARALGARFAGDPPGMDPAAEGADDGAPRRGGA 461 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + + E+ + +D+ P+ V+ ++ +AN L L Y + Sbjct: 462 VTPFRGAAAPARQAGREPAGAEDPSARILDRLPLGVLVHRGDDVLFANRRLLGLAGYGTA 521 Query: 358 DDIEIAGGLSTLL---DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 +D+ AGG L D L A PV L + + + L T++W+ + + Sbjct: 522 EDLSQAGGAGALFKGRDPASLPPTEAGYPVCLATREGGTLPVAVTLTTVEWSGAPASLLL 581 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 A+ + ++ + + + ++ ++L++ +DG+ ++ G I Sbjct: 582 LRRLPDADPA----------QDLAAAELDLARQQANLREIEAVLDSMTDGVVTLDGSGRI 631 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 L N+ LFG+ ++ + F++ ++ + L S + +G + Sbjct: 632 LDFNKGAKALFGHEPREVTGEDFSLLFTPDSRPAVQAALQRARSGEPASI---EAIGERR 688 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 E +L+L + + +S + D++ ++ + +L AK+ AE +S KSDFLA +SH Sbjct: 689 EG-ILALTVAPIAGEGTRRFSALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISH 747 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL AI+GF+EV+ ++FGP+GN RY +Y I SG V+ +V DLLD++KIE+G Sbjct: 748 EIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGH 807 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 ++L F V+L++ V ++SL+Q A +R+++RTSFA+ + +LAD+RS++Q ALN+++N Sbjct: 808 LDLSFTGVALNDLVGASVSLMQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIAN 867 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI FT +GGQ+I+ST T V LRVRDTG+GMT E+E A++PF Q+ +Q RG GT Sbjct: 868 AIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGT 927 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGLPL KA+V+AN G + S +GTL+E++FP Sbjct: 928 GLGLPLTKALVEANRGTLRVTSRKHEGTLVEVLFP 962 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 121/415 (29%), Gaps = 52/415 (12%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 +RF W DA G L E + L +G +G ++ + ++ + L+ T Sbjct: 162 IRFLWRSDAGGRLVEATPSLADAVGASP---VGQHWDELLAGTVLTQDDRLAAALEEHRT 218 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + W + ++ V +DL+ P R F+GF GFG++H +RV P + Sbjct: 219 FRAVPVRWRLGESDQGVQVDLSGAPRLGEGRAFAGFSGFGVIHPDRVAALPPRPPASPAR 278 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYP 260 L E S+ + + PP + V+ L + + L Sbjct: 279 PRPSLRERAAAVISIGRAA---NPEAPSPPPGANPDYVADLPAFASLAGATLAGFAGMMA 335 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + L + + + + + + +A E Sbjct: 336 STSLNPFGLGWTFCSDPADEAGEPASEEVPPREIPASPPPGPDAPGPGEAAAAAPSEAAP 395 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + + P P + A+ L L ++ + +I A G D P + Sbjct: 396 EAVKAPESAPEP----AGRRPLAASQ--LSLNEHAAFREIARALGARFAGDPPGMDPAAE 449 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 R Q G EP + Sbjct: 450 GADDGAPRRGGAVTPFR-------------------------GAAAPARQAGREPAGAED 484 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + IL+ G+ + + +L NR + L GY + L + Sbjct: 485 PSAR------------ILDRLPLGVLVHRGDD-VLFANRRLLGLAGYGTAEDLSQ 526 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 27/248 (10%), Positives = 59/248 (23%), Gaps = 12/248 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + + ++ G+ ++ G + D + L+R G+ Sbjct: 625 LDGSGRILDFNKGAKALFGHEPREVTGEDFSLLFTP---DSRPAVQAALQR--ARSGEPA 679 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207 G + L PI G R F ++ A R + Sbjct: 680 SIEAIGERREGILALTVAPIAGE-----GTRRFSALLRDVTAARRTEAELLRAKRAAEAA 734 Query: 208 HEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + K + + + M+ + + + S Sbjct: 735 NSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRTSGEHVVSLV 794 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + L + +L+ L S + + R + F G + Sbjct: 795 TDLLDLAKIEAGHLDLSFTGVALNDLVGASVSLMQPQAARQRVVVRTSFASGLKPVLADM 854 Query: 327 DKCPIPFF 334 Sbjct: 855 RSMRQAAL 862 >gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1610 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 135/761 (17%), Positives = 276/761 (36%), Gaps = 60/761 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-----NT 142 ID G ++ + L +G A ++IG + + + + ++ + + L + Sbjct: 568 IDERGRIESANTALLNLLGYQAHELIGQNISLLMPSPYREHHDEYLANYLATGKRTIIGS 627 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +GT + + + ++ + I + + G++ A + ++ Sbjct: 628 GRDVPAV-RKDGTQIDLHVSVSEMQIGTEK------KYTGMLRDISERKRMEATLRESEE 680 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKT 256 +F L E + SP + S + H +D + Sbjct: 681 RFRQLAEHIDAVFWLTSPDKSEVLYVSPAFETIWEFPRDLLYVNPSFWLDHIHPEDRTRV 740 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----S 312 E+ T + + ++N E + + Sbjct: 741 ATAAACQM-HLPYDEEYRIVTPSGQVRWIRDRSFAIKNAQGEPYRIAGITVDITAAKQME 799 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 A E V+ P FV + + N + + L + + L Sbjct: 800 AQIRASELRHRALVELSPHAIFVNCEDRIVFTNQACVKLLGAIAPSQLFGKTVLE--FIH 857 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P+ + + +++ R + F Sbjct: 858 PESQAKVQQRIATIRETNQPVPPTEERFV-----GLAGAIIDVEVAATPIMFEGKPAIQV 912 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVED 491 I + + +R + +QL +IL + + I N EG I + N +L GY ++ Sbjct: 913 IATDIRARKDLERALLATNLQLQTILASATNVSIVATNTEGTITTFNTGAEELLGYTSDE 972 Query: 492 ILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQT------------LEKITLGSTKEEKL 538 ++ + + L+++ ++ E+ K+ Sbjct: 973 MIGQQSLILLHVPEEIDRHAKELSDLYERPIQGVAALVEHANRGGFDEREWTYQRKDGSR 1032 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L++ + I L S + DI+ K ++ L+ A+ A + + K+DFLA +SH Sbjct: 1033 LTVLVTITALRDSDGVVTGFLAMGKDITSRKAAEHALAEARDEALRAAQVKADFLATMSH 1092 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ AIIG + ++ + E+A+ + RS + +L ++ND+LD SKIE+GK Sbjct: 1093 EIRTPMNAIIGMTGLLLDTALTK----EQHEFADSVRRSSDGLLTLLNDILDFSKIEAGK 1148 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 ++ P L V + + L+ A K + + +P ++ D ++QI +N++ Sbjct: 1149 LHFEQLPFDLRMTVEDTVELLAEQAQSKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVG 1208 Query: 714 NAIHFTPSGGQIIISTTHTSNEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NAI FT +G ++ + T + + ++DTG+G+ + F Q +S R Sbjct: 1209 NAIKFTAAG-EVFLHVTRETQGGLDLLRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRR 1267 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FP 809 GTGLGL + + +V G+ + S +G+ FP Sbjct: 1268 FGGTGLGLAICQRLVSQMHGQIGVESHSGQGSTFWFTAQFP 1308 Score = 132 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 50/525 (9%), Positives = 136/525 (25%), Gaps = 39/525 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W I G + +E T+G ++ + + R +T Sbjct: 303 WEI-PTGRVT-FNERWASTLGYRLDELEPHVRTWEQLVHPDDLQQVMATVSAHLRGDTPT 360 Query: 145 GKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-- 201 + + + + + + R GI A R Sbjct: 361 YSSEHRLRRKSGAWCWVFDSGRVVKRDAKGAP--LRAAGIHLDISDRKALEAAQARAQCD 418 Query: 202 --KKFSHLHEIKKGHSSVEKEKYDIFSQQSP----------PPHLRMKNKVSSLTEYYAH 249 K L E + Q++ P + + L+ + Sbjct: 419 LHAKQQALDEAQTQAHLGSWHWNIETGQEAWSDEQCRIFGHTPDQSLPTYATFLSALHPD 478 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSH 305 + +K + + +S + ++ + L Sbjct: 479 DVERVK-QAVDGALTYDSPYNVDCRIRRPDGEVRHINCRGVVQRDPDGRPVSMAGTVLDI 537 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ + + E + + G + AN + L L Y++ + I Sbjct: 538 TDYKRTEFAWRDSETRMRSIFESAIEGIVVIDERGRIESANTALLNLLGYQAHELIGQNI 597 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L L+ +P ++ L RT I + + ++ + + Q Sbjct: 598 SL--LMPSPYREHHDEYLANYLATGKRTIIGSGRDVPAVRKDGTQ---IDLHVSVSEMQI 652 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSK 483 G+ + + + + + + + E + + + +L + A Sbjct: 653 GTEKKYTGMLRDISERKRMEATLRESEERFRQLAEHIDAVFWLTSPDKSEVLYVSPAFET 712 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 ++ +P + + P + + + ++ T ++ +R Sbjct: 713 IWEFPRDLLYVNPSFWLDHI--HPEDRTRVATAAACQMHLPYDEEYRIVTPSGQVRWIRD 770 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + DI+ KQ + ++ ++ Sbjct: 771 RSFAIKNAQGEPYRIAGITVDITAAKQMEAQIRASELRHRALVEL 815 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 41/433 (9%), Positives = 102/433 (23%), Gaps = 26/433 (6%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + + R G R K + + + S+ + Sbjct: 9 LRDMTACGAALRRLGT--DAASLEQVADRLVRHLYKSLTMGHLGEPACSLVRLFKTTPYS 66 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P + + T + + F I L+ + Sbjct: 67 RLTPDLRALADTRIGNTPPAPSLTCLTLLASAGAVPGWNDPAHSS-RFRVIPLDTLEAVE 125 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 ++ L P S D+ E V P Sbjct: 126 RLPMFSQLFRQLGVSLPSLTQPGPSVLLDQHEQSFN--VFHIPEA----EGSPYVPGQEE 179 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLD-----APKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 F+ +SV L + ++ A L + +A A Sbjct: 180 FVRTYGIRSVLGFGAPLPDGELFSIILFSKDFIPESTATLFKPLALCAQIALAPYATTTA 239 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + S + + ++ ++ + ++ I++ + Sbjct: 240 ASHPHQTSRPEQAGDDPTPVHNAHLQARIADLERLLAVH--EQTVDEQADRMDLIVQGSQ 297 Query: 463 DGIAIIN-REGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSL 519 G G + N + GY ++++ + + + + + ++ L Sbjct: 298 MGTWDWEIPTGRVTF-NERWASTLGYRLDELEPHVRTWEQLVHPDDLQQVMATVSAHLRG 356 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHA 574 D T K + + + + + DIS+ K + + A Sbjct: 357 DTP-TYSSEHRLRRKSGAWCWVFDSGRVVKRDAKGAPLRAAGIHLDISDRKALEAAQARA 415 Query: 575 KKIAEKESSHKSD 587 + + + Sbjct: 416 QCDLHAKQQALDE 428 >gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 754 Score = 432 bits (1111), Expect = e-118, Method: Composition-based stats. Identities = 143/755 (18%), Positives = 273/755 (36%), Gaps = 51/755 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------ 139 W +D S+ + G +IG L I + H +L R Sbjct: 16 IWVVDKFDKFIYFSQNMADITGISKEDVIGKYLMSYMPERTIGNDVHFRELFLRVKNTLQ 75 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK- 198 + +PI + ++G I+ + + Sbjct: 76 PEHFKSIPLRNKKGNITYQ---SGRLVPISDTDSNYNGMA--CIIEDITEQKLSKKTQRD 130 Query: 199 --RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA------HK 250 + K +++ + + + + D + ++ T H Sbjct: 131 EWEAENKLESIYKSSPVIAFLWRAEKDWPVEFVSDNIIQFGYTSEDFTSGRLIFGDIVHP 190 Query: 251 DDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLS 304 DD+ K + + ++ T + + + + + Sbjct: 191 DDLQKVRDAVSQVEIGGYTYFTKEYRILTKSGEARWVTERSMLGRKYNGVPAYYQGIIID 250 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + E + P+ F + G + N + L + + I Sbjct: 251 VTERKKAEEALRKSERKYRLIFENSPLGIFDFDENGVVTSGNENMLKILDLTRDELIG-- 308 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 D PK ++ +K + + + N+ L + F P Sbjct: 309 ------FDMPKSLEDEDMKKALYQVFQKKTGHYEGYYRSPTSNKTVPLKVDFSPIISE-- 360 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 GI + + + + ++ + S+ E +D I I + +G IL N+ S+ Sbjct: 361 EGTIQGGVGIVEDITERKQAEEALKESEKKFRSLFENANDAIFIHDLKGNILEVNQLASQ 420 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 GY +++ + M + L I T+ TK + + + Sbjct: 421 RLGYSKDELTNIKSMDLISPFYADNMKNRLNTIQKKGHGI---FETVQITKNGSSIPVEL 477 Query: 544 I--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSH 594 I + + DI+E K+ + KL+ K + K +FL+ VSH Sbjct: 478 SSRIIEYEGKTAILALARDITERKRAERKLNEYANELAKANEELKSLDKMKDEFLSNVSH 537 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E++TPLT+I G+S +I + G L N + N I R+ + +V+ L+ +S ++GK Sbjct: 538 ELKTPLTSIKGYSNIIYEETLGKL-NDEQKKTMNTIVRNSERLRRLVDSLIYMSMSQAGK 596 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + FEPV + + + +AI N+K +++ + + NIP+I D + + N+L N Sbjct: 597 IEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVSENIPQINGDKAKLTDMLTNLLDN 656 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 A FT SGG+I + +E + ++V DTGVG+ + + F QI +S + + GT Sbjct: 657 ATKFTSSGGEITVE-AFEEDEHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSSIRRKYGGT 715 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + K +VDA+ G +I S KGT + + P Sbjct: 716 GLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 12/123 (9%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---PSV 508 ILE S GI ++++ + ++ ++ + G ED++ K ++ + T Sbjct: 3 EFYEQILENISQGIWVVDKFDKFIYFSQNMADITGISKEDVIGKYLMSYMPERTIGNDVH 62 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK------EEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + + + + I L + K +L+ + + + + DI+ Sbjct: 63 FRELFLRVKNTLQPEHFKSIPLRNKKGNITYQSGRLVPISDT---DSNYNGMACIIEDIT 119 Query: 563 EWK 565 E K Sbjct: 120 EQK 122 >gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799] Length = 1756 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 139/761 (18%), Positives = 267/761 (35%), Gaps = 55/761 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---GKT 147 G + ++++ G ++IG + + + + + + T + Sbjct: 531 PDGTVVYLNQQAESLTGYLRDELIGQSVEVLVPPASRNHHPQLREAFLSDATARPGGMEL 590 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L+ +G L V I L+ LP ++ + R I+ + + +++F L Sbjct: 591 ALYRADGKKLAVEISLSELPAFAGQQP----RIAAIIRDISERHAMDRKLRESEERFRTL 646 Query: 208 HEIKKGH------------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 G + + D+ + K +SL D Sbjct: 647 VGNIPGVVYRCALDSHWTMAFISDHIKDLSGYPASDFLNNAKRSFASLIHPE---DATRL 703 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 E L S ++ + + + + + + + Sbjct: 704 AEVVKLGVEAGDSWSQEYRIINRRGQVRWVYEKGRAHYDENGKPMWLDGSIHDITEARSN 763 Query: 316 DEGE----NLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGG 365 + + P F + + +E Sbjct: 764 HQQMLAAKAQLETITESVPGVVFQLQQDDSELGIRCSFVSGGIRQALGVSKSRVLENLNS 823 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + L+ D A++ + +D + I + + Sbjct: 824 VLELVHP---EDRGALETTLKRSADSQQDWSREVRFVI---GGTEQWFSVSVQVSRDDSG 877 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 NG + ++++ ++ + I +N+ G+I N + Sbjct: 878 ALW-WNGFLVNISQRKAMEQQLVNSEAHFRALFDNAGIAIVTLNKLGVIGEANERFQQFA 936 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 E ++ + + L N L +L+ + R L + + L + Sbjct: 937 ELEPEQLIGQHISQLLPAEDRDSFNQSLAPLLAGEQRH-LAQEMRYRKPDGSLRWADMRA 995 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 L LTM D++E +Q L AK+ A+ S K+DFLA +SHEIRTP+ Sbjct: 996 VVLKDYQGGLSALVLTMSDVTERRQINEALRQAKEAADAASKAKTDFLANMSHEIRTPMN 1055 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIG +++ P R +Y ID + +L I+ND+LD SKIE+G++ L EP Sbjct: 1056 AIIGMTQLCLQTDLPP----RQADYLRKIDSASQSLLGIINDVLDYSKIEAGRLELEQEP 1111 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 +LDE + + L + A EK + + + +P R+ D+ + QI +N+LSNAI FT Sbjct: 1112 FALDELLEQLSDLFAVRAKEKGVELLFAVEPEVPARLNGDMLRLGQILINLLSNAIKFTD 1171 Query: 721 SGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G +++++ + VRDTG+GM+ + + + F Q +S + GTG Sbjct: 1172 HG-EVVLAIRQLDGAPPGQTRLTFSVRDTGIGMSPEQQARLFQSFSQADSSTTRKYGGTG 1230 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 LGL +++ +V G+ + S G+ L P Sbjct: 1231 LGLAISQRLVSLMGGQIQVNSAAGAGSTFHFSIELALPEQP 1271 Score = 113 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 42/397 (10%), Positives = 101/397 (25%), Gaps = 21/397 (5%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 R D + + P +M+N V L + Sbjct: 260 RQQELGIERMVMADGGEFVVAYQWIPTTDWLLAIARPAETVDAPILAKMRNSVLQLLLFT 319 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + E + + K + ++ Sbjct: 320 LLFALIAWWLTRRIARPLEQLRHRVIALQHGSRSLTALKVPGTEEIQALDQGLLSMAEAL 379 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG 364 D + + ++ F Y+ G + +A+ S + Y + Sbjct: 380 KERELRLQDAHGSRLAKLLEGMGDTAFYYAMDPDGKVLHASDSVKAVLGYSPEE------ 433 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + D A ++ + + Sbjct: 434 -FARRYPRLFVDDEINESSWRYQEQLMQGQAVPPHPLALRHENGEVRQFSAYMQPVTDVQ 492 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + + + S+L+A D I + +G ++ N+ L Sbjct: 493 GDLLGIEALLTDMTEELEA-------GRWYQSVLDAAPDAILLAEPDGTVVYLNQQAESL 545 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY ++++ + V + + + LS + + K L++ I Sbjct: 546 TGYLRDELIGQSVEVLVPPASRNHHPQLREAFLSDATARPGGMELALYRADGKKLAVEIS 605 Query: 545 IKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +LP + + DISE KL +++ Sbjct: 606 LSELPAFAGQQPRIAAIIRDISERHAMDRKLRESEER 642 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 58/518 (11%), Positives = 142/518 (27%), Gaps = 38/518 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F + +D G + S+ + +G + D + + + L + Sbjct: 406 FYYAMDPDGKVLHASDSVKAVLGYSPEEFARRYPRLFVDDEINESSWRYQEQLMQGQAVP 465 Query: 145 GKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 E + +A P+ + G + G+ Sbjct: 466 PHPLALRHENGEVR---QFSAYMQPVTDVQGDLLGIEAL-----LTDMTEELEAGRWYQS 517 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL----KTEK 258 + Y +S +LR +++ + + + Sbjct: 518 VLDAAPDAILLAEPDGTVVYLNQQAESLTGYLR--DELIGQSVEVLVPPASRNHHPQLRE 575 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + + + + + L + + + S D Sbjct: 576 AFLSDATARPGGMELALYRADGKKLAVEISLSELPAFAGQQPRIAAIIRDISERHAMDRK 635 Query: 319 ENLTPETVDKC--PIPFFVYSHGNLFYANPSFL-----LLTKYKSVDDIEIAGGLSTLLD 371 + E IP VY + +F+ L+ Y + D + A L Sbjct: 636 LRESEERFRTLVGNIPGVVYRCALDSHWTMAFISDHIKDLSGYPASDFLNNAKRSFASLI 695 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+ + V L + R+ + + ++ + M + Sbjct: 696 HPE-DATRLAEVVKLGVEAGDSWSQEYRIINRR---GQVRWVYEKGRAHYDENGKPMWLD 751 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---NREGIIL--STNRAVSKLFG 486 G + + R N ++M QL +I E+ + + + E I + + + G Sbjct: 752 GSIHDITEARSNHQQMLAAKAQLETITESVPGVVFQLQQDDSELGIRCSFVSGGIRQALG 811 Query: 487 YPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRI 543 +L + + L S D +Q + E+ S+ + Sbjct: 812 VSKSRVLENLNSVLELVHPEDRGALETTLKR--SADSQQDWSREVRFVIGGTEQWFSVSV 869 Query: 544 IIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580 + + + + + +IS+ K + +L +++ Sbjct: 870 QVSRDDSGALWWNGFLVNISQRKAMEQQLVNSEAHFRA 907 >gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110] Length = 1302 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 136/778 (17%), Positives = 262/778 (33%), Gaps = 43/778 (5%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 T SE V W D+ G +++ G +G D Sbjct: 407 ETALRASETKLRGMTDNAPV-MIWVTDSTGSCTYLNQRWYDFTGQREATALGFGWLDAVH 465 Query: 124 ILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 + I ++ ++ + L G Y AA P + N +F G+ G Sbjct: 466 PEDSEAARGIFLKANEKHESFRLEYRLRHHSG--QYHWAIDAAHPWFGENGKFKGYIGAV 523 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-------HSSVEKEKYDIFSQQSPPPHLR 235 I + ++++ L E + + D ++ P + Sbjct: 524 I--DISDRKQAEEALRHSEERYRTLFESMSEGFCVIKMLFDPDNQPIDYCFLETNPAFEQ 581 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQ 293 ++ + L+ + + H ++ L Sbjct: 582 QTGLSQAVGKTARQLLPDLEPHWFETYGKVALTGESIRFEHGSDVMARWFDVSAFRIGLP 641 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLT 352 K + + E D + G +F+ N + T Sbjct: 642 EEGKVAILFEEISERKQTERKLQENALRFHTLADNISQFAWMANEQGWIFWYNQRWFDYT 701 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++++++ G + + + + ++ Sbjct: 702 G-TNLEEMQGWGWQK---VHHPDHVKRVTEKINQCFATGEIWE---DMFPLRSKTGEYRW 754 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 ++ + + G + + R + + + + E+ + NREG Sbjct: 755 FLSRAIPIRDEQGKVLRWFGTNTDITELREAENALRQSEERYRCLTESIPQLVWTANREG 814 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 +L N+ + G +E + + V+ TE + + Sbjct: 815 ELLDVNQRWIEFTGLSLEQARADGWEAVVHPEDLPVLREQWTEAVQRGTP--YQAEGRMR 872 Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKE 581 + + T DI KQ + + A+++AE+ Sbjct: 873 RMDGTYRWFLHQAIPQGNEPGKMIKWYGTATDIDVQKQLELERDRLLAQEQAAREVAERA 932 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + K +FLA +SHE+R+PL I+G+S++++ ++ L + E + I+R+ L ++ Sbjct: 933 NRIKDEFLAVLSHELRSPLNPILGWSQLLQVRK---LDEAQTAEALHTIERNAKLQTQLI 989 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +DLLD++KI GK++L V+L + + AI V+ A K I + + NI ++ D Sbjct: 990 DDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVKQTAKSKSIALESQL-PNIGQVSGDE 1048 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI N+LSN I FTPSGGQ+ I + V+DTG G++ L + F Sbjct: 1049 ARLQQIVWNLLSNGIKFTPSGGQVKIHLKRV-GSYAEILVKDTGKGISPDFLPHIFESFR 1107 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDT-SHPH 817 Q S + G GLGL + +V+A+ G S G + PL D S P Sbjct: 1108 QEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAESPGEGLGATFTVQLPLLDAESEPQ 1165 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 53/536 (9%), Positives = 140/536 (26%), Gaps = 46/536 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150 + ++E + IG LC++ + +++ + ++ Sbjct: 165 DFRIDYLNEAACQNNQMPKAMQIGRGLCEILPAHRQSGLFDEYCRVVETGKPLIKDSLIY 224 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF------------GIVHVNRVDNDPRALGK 198 + + + + +R I H+N+ AL + Sbjct: 225 DDTYGDRRLIRAFDIRASKLNDGFVASWRDVTAHRQLELELNQTITHINQHQQTTLALQQ 284 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDV 253 ++ + G + ++ + M + +D Sbjct: 285 SQERLNLAMKAASMGSWDWNIQTGEVNWSSNLENLFGMSPGSFDGTYETVRAMIHPEDLP 344 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHP 309 + + F + + ++ + Sbjct: 345 KVEQALQRALYNREEYNIEFRFIKPDGSLRWALGLGRVFYDDEGNPIMMTGVDMDISHRK 404 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E D P+ +V G+ Y N + T + + G L Sbjct: 405 QIETALRASETKLRGMTDNAPVMIWVTDSTGSCTYLNQRWYDFTGQREATAL-GFGWLDA 463 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + +++ + +++ + + ++ + + + Sbjct: 464 V-----HPEDSEAARGIFLKANEKHESFRLE-YRLRHHSGQYHWAIDAAHPWFGENGKFK 517 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI----INREGI-----ILSTNR 479 G + D + + + + ++ E+ S+G + + + L TN Sbjct: 518 GYIGAVIDISDRKQAEEALRHSEERYRTLFESMSEGFCVIKMLFDPDNQPIDYCFLETNP 577 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A + G + K L + ++ E GS + Sbjct: 578 AFEQQTGLS--QAVGKTARQLL-PDLEPHWFETYGKVALTGESIRFEH---GSDVMARWF 631 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + LP ++ +ISE KQ + KL + + S F A +++E Sbjct: 632 DVSAFRIGLPEEGKVAILFEEISERKQTERKLQENALRFHTLADNISQF-AWMANE 686 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 48/160 (30%), Gaps = 9/160 (5%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---------EGIILSTNRAVSK 483 ++ K++++ + +E D I + + I N A + Sbjct: 118 AMRTAIENAELKQELQRSQETFRTSVENMLDCFGIFSAMRDDLGKIVDFRIDYLNEAACQ 177 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 P + + L + S + ++ + + T ++ L Sbjct: 178 NNQMPKAMQIGRGLCEILPAHRQSGLFDEYCRVVETGKPLIKDSLIYDDTYGDRRLIRAF 237 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 I+ + + + D++ +Q + +L+ + Sbjct: 238 DIRASKLNDGFVASWRDVTAHRQLELELNQTITHINQHQQ 277 >gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1299 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 134/778 (17%), Positives = 278/778 (35%), Gaps = 67/778 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D H K ++ + IG +++G + + L+ + + Sbjct: 248 DKHYKWKFFNDSFCEFIGYSREQLLGHSDSEFFVSEEAEVFRKTDQLVMKNGVV-NENEE 306 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------- 200 + + + I + G++ +L Sbjct: 307 YFTDANGILHFISTKKTRFFDSKNNP---YIVGVIRDLTHRKQLEDRLAKLNECFLDFGS 363 Query: 201 --DKKFSHLHEIKKGHSSVEKEKY---------DIFSQQSPPPHLRMKNKVSSLTEYYAH 249 DK +HL + + Y + Q PP + M + + Sbjct: 364 NPDKNINHLVAVCGQLLNASFALYNCLEYNQLVTLGQWQVPPDYPTMDSAKGRICYDVIR 423 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKESFEYLSH 305 + K L + + + + + K+ G+L ++ E + Sbjct: 424 QGTDESVVKQDLQNTAYAQTDPNITAYNLCTYIGIAVKWNKKVMGSLCVLYQQQVEPSTE 483 Query: 306 ---------------RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFL 349 + + V+ + + Y +P + Sbjct: 484 DKQLLNLIASAIGVEEQRKQAQQELQDSKERFALAVEGVNDGIWDCNLQTGEMYLSPRWK 543 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + YK + + ++ L L + + + + Sbjct: 544 SMLGYKDDEITNTFESWTQIIHPDDLEQTLLSFNNYL---EGNFFQYQEEFRALHKDG-S 599 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + ++ + G + + + + ++ ++ + LEA +DGIA++N Sbjct: 600 YRWLLTRGAALWDKTGKPYRIAGSHTDISERKKAEEALKSQL----TALEAATDGIALVN 655 Query: 470 REGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK 527 G N+ +LFGY +++ + + + + ++ Sbjct: 656 PAGEYFYLNQTHLELFGYTQPNELVGRQWHIIYPPEEIERIEKSVFPQLFKTGKWSG--- 712 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-------IAEK 580 K+ + + L DI++ KQ + ++ + E+ Sbjct: 713 EATAVRKDGSTFAEEFSLTLLED-GGLIRVCRDITQRKQAEEQMQQNHQRLAMANAQLER 771 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + K +FLA +SHE+RTPL AI+G SE ++ + +G + + R + + I SG +L++ Sbjct: 772 ATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITD-RQRKSLSTIQGSGQHLLEL 830 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +NDLLD++KIESGKM LH VSL + + ++ V+ A+ K I + + + I D Sbjct: 831 INDLLDLAKIESGKMELHICAVSLQKLCNSSLMFVRNQAHHKNIKLTSQVTEKLWEIEVD 890 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKP 759 R ++Q+ +N+LSNA+ FTP+GG +I+ + V DTG+G+ + K + Sbjct: 891 ERRIRQVLINLLSNAVKFTPTGGSVILKAEEDLLRNTICFSVMDTGIGIAKENMPKLFQS 950 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 F QI + R GTGLGL L + ++ + G+ + S +G+ + P+ + P+ Sbjct: 951 FVQIDSRLSRRYAGTGLGLALVQRTIEIHGGRVDVESEVGQGSCFRVTLPIKQSGEPN 1008 Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 33/301 (10%), Positives = 78/301 (25%), Gaps = 35/301 (11%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + T + + + + + N F + ++ Sbjct: 62 IARDITERKQGENLLKRTKFLLKAQQEASIDGILVIDENQKIIWHNRRFGQMWNIP--EE 119 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 I + G L LS N K + + I N Sbjct: 120 ILNSSGDDQKLLKSVLSKLNKPKEFIHRLKYLCEHPSEVSRDEIYLNDGRIFDRYSGSVV 179 Query: 420 KANQFPENMPQNGIEPEDVDTRINKR--------------KMEIEVMQLCS-------IL 458 + + + + + ++E+ +L + I+ Sbjct: 180 SEAS--DYYTRIWYFRDITQRKQVEAQVTQLNQELSNHALELEVANTELAATKDFITNII 237 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 A SD I + ++ N + + GY E +L + F V ++ Sbjct: 238 NAVSDPIFVKDKHYKWKFFNDSFCEFIGYSREQLLGHSDSEFFVSEEAEVFRKTDQLVMK 297 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAK 575 + E + L + + S + D++ KQ +++L+ Sbjct: 298 NGV--VNENEEYFTDANGILHFISTKKTRFFDSKNNPYIVGVIRDLTHRKQLEDRLAKLN 355 Query: 576 K 576 + Sbjct: 356 E 356 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 19/195 (9%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + + + + ++ L + EA+ DGI +I+ I+ NR +++ P E Sbjct: 61 VIARDITERKQGENLLKRTKFLLKAQQEASIDGILVIDENQKIIWHNRRFGQMWNIPEEI 120 Query: 492 IL-----RKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 + +K L + N P H L + + ++I L + ++ Sbjct: 121 LNSSGDDQKLLKSVLSKLNKPKEFIHRLKYLCEHPSEVSRDEIYLN---DGRIFDRYSGS 177 Query: 546 KKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 S Y+ DI++ KQ + +++ + + +A T L A Sbjct: 178 VVSEASDYYTRIWYFRDITQRKQVEAQVTQLNQEL--SNHALELEVAN------TELAAT 229 Query: 604 IGFSEVIKNQRFGPL 618 F I N P+ Sbjct: 230 KDFITNIINAVSDPI 244 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 16/170 (9%), Positives = 49/170 (28%), Gaps = 11/170 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146 ++ G +++ + G +++G + + I+ + L + W G+ Sbjct: 654 VNPAGEYFYLNQTHLELFGYTQPNELVGRQWHIIYPPEEIERIEKSVFPQLFKTGKWSGE 713 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G+ L L + + ++ ++ + Sbjct: 714 ATAVRKDGSTFAEEFSLTLL----EDGGL-----IRVCRDITQRKQAEEQMQQNHQRLAM 764 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + + + ++ E S + P + +L E + Sbjct: 765 ANAQLERATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITDRQR 814 >gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina ymp] Length = 1291 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 123/760 (16%), Positives = 250/760 (32%), Gaps = 62/760 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + + + +G A +MIG + + + + G Sbjct: 560 TDTSGTISLFNSGAERLLGYGAAEMIGRQTPAIIHLEEEVQARAAELSEASGHAVEGFEV 619 Query: 149 ----------------LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 +G V + ++A I+ N + +GF G I Sbjct: 620 FVHNARGGEPETRQWTYRHKDGGLRQVNLTVSA--IFDENGQITGFLG--IASDISELLQ 675 Query: 193 PRALGKRLDKKFSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 ++ + +F L G + D P + Sbjct: 676 TTRALQKSESRFRGLVANLPGVVYRCANDSQWSMRYVSDEIRNLCGYPASDFIDNRVRSF 735 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 H DD+ T + + S + + ++ + Sbjct: 736 SSIVHPDDLAITFRAGEAIERQESFELTYRLRHADGHNVWVREKGRGEYDGQGHLLWVDG 795 Query: 305 ----HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359 ++ + + P V G AN + Y + Sbjct: 796 FIWDISERQAMEDELRLSQQRFLNAFNTAPQGMALVGPDGRWLEANDELCRMLGYSREEL 855 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + T D +A + M A + L + Sbjct: 856 LACTYQQVT-----HPDDLDADRQNMEDLLAGRINAYQMEKRYLDKQG-RILWVLLSVSL 909 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + D +R + L ++L+ D I I+ +G I + N Sbjct: 910 VRDSEGRPVHFVSQIQDFSDRVAAERAVREREHYLSTLLDNVLDAIVTIDEQGRIETFNH 969 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEK 537 A +FGY ++ + + + S + Y+ L + + G + + Sbjct: 970 AAEAIFGYRQSEVAGHNVRLLMPEPYRSAHDGYIQRYLRTGEAWVIGQARELEGMRQNGE 1029 Query: 538 LLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++ + + ++ + + DI+E K+ + K++F++ VSHE Sbjct: 1030 RFAMELAVSQISHQGQRRFIAVIRDIAERKRIE--------------LMKNEFVSTVSHE 1075 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPLTAI G +I G + + + + + ++NDLLD+ K+ +GKM Sbjct: 1076 LRTPLTAIAGSLGLINGGALGAVPD-NMRQMLAIAHSNSQRLSALINDLLDMDKLVAGKM 1134 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + + +L + +A+ Q YA + ++ +R ++ ++ D + + Q+ N+LSNA Sbjct: 1135 HFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDDA-QVRVDAQRLAQVMANLLSNA 1193 Query: 716 IHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 F+P G + + H EV + V D+G G+ + F Q + + GT Sbjct: 1194 AKFSPPGTCVDVRLQH--GGEVLRVSVTDSGPGIPEAFKPRIFSKFSQADSGDTRQQGGT 1251 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 GLGL + K +++ G S+P +G P+ ++ Sbjct: 1252 GLGLAICKEIIERMGGHIGFDSSPGQGATFWFELPITGSA 1291 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 38/422 (9%), Positives = 102/422 (24%), Gaps = 40/422 (9%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--- 249 + + +++ E ++ + Q R ++ S A Sbjct: 268 RQQVLAWQEQRRLPAPEEGDSVRLLDHGERHYLVNQVALSSYRQAHQRSDEPLAVALIWH 327 Query: 250 --KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 D + + L + + ++ L + + L+ Sbjct: 328 DISDQYNVHRRDKRWLVIKWLLAWCGAEALLLGLLRSTQRSTQRLMQRQQAALRALNEIA 387 Query: 308 HPSLSAYFDEGENLTPETVDK--CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + ++ + P+ G + E+ Sbjct: 388 ALPSLSRTEQLRQALRLGAEHFGMPLGIISRIEGERYQVVVQVSPDGALSDGQQFELGDT 447 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLHT-IQWNRENSLAMTF------- 415 +L + +R A + + T ++ + + F Sbjct: 448 YCSLALQQDEALAITHMADSPHRRHPCYRQFALESYIGTAVRVAGKPFGTLAFANPEPRR 507 Query: 416 --IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREG 472 + G ++ + +R + L ++L++ + I + G Sbjct: 508 RPFDAADRDFLGLFARWVGA---ILERQQQERAVRAARAYLQAVLDSATGVSIIATDTSG 564 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------ 526 I N +L GY +++ + + S + E Sbjct: 565 TISLFNSGAERLLGYGAAEMIGRQTPAIIHLEEEVQARAAELSEASGHAVEGFEVFVHNA 624 Query: 527 -------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575 + K+ L + + + + + + DISE Q L ++ Sbjct: 625 RGGEPETRQWTYRHKDGGLRQVNLTVSAIFDENGQITGFLGIASDISELLQTTRALQKSE 684 Query: 576 KI 577 Sbjct: 685 SR 686 >gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1278 Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats. Identities = 134/743 (18%), Positives = 283/743 (38%), Gaps = 43/743 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143 DA G L +++ + G +++G + ++D + + + N W Sbjct: 404 TDAAGTLIYVNDRFCEISGYSRNELVGQNHRIVKSSEHLPEFYLD----MWNTIVCGNIW 459 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G+ +G ++ + +P ++ I + L++ Sbjct: 460 RGEVCNRRKDGRLY--WVETSIVPFLDNTGRP--YQYVSIRTDISRIKKAELRLRLLERA 515 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261 V K + + +++ + + + + Sbjct: 516 VEASA-SSISMVDVNKPGMPLIYVNPAFERITGYSRDEAIGRNPRFLQGKETDQPGVDEI 574 Query: 262 LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + H N Y + + ++ + + + Sbjct: 575 RAVLQEGRAGGALLHNYRKNGTPYWNDLRIAPVHDEQGRLSHFIGIADDVTERRDAGDAL 634 Query: 320 NLTPETVDKCP----IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E + + I + ++ G + + L Y E +S Sbjct: 635 LKSEERLRRSQHYANIGTWDWNIQTGKVI-CSERIGSLFGYP-----EDKREISFKYFLD 688 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ K + + A H W + + + G+ Sbjct: 689 GIHPDDRQKVIDAVDACVQQGAEYNIEHRCVWPDGTVRWLLERGDVVRDGDGTPLNMLGV 748 Query: 434 EPEDVDTRINKRKMEIEVMQL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + K+ + +L I+E +D + I+ G I S N A KLFGY Sbjct: 749 VQDITHRKFAELKILEKQARLVIFNHIIENVADAVITIDSVGTISSFNPAAEKLFGYSAA 808 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLR--IIIK 546 +I+ + + + + S Y+ + + + G K+ + SL + + Sbjct: 809 EIINRNVNLLMPEPYRSKHGRYIDLHNAGQPSGIIGKQLELPGQHKDGTIFSLELAVTLM 868 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 ++ S + + DISE KQ + ++ A+ AE ++ KS+FL+ +SHE+RTP+ AI+GF Sbjct: 869 EIDDSKHFVGILRDISERKQYEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGF 928 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++++ N +Y + I ++G+ +L+++N++LD+++IESG +NL EP+S E Sbjct: 929 GQLLE---IEAGLNEDQADYVDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAE 985 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + E ++L++ A + I I A I AD +KQ+ +N+LSNAI + G+++ Sbjct: 986 LIGECLTLIKPIAQVRGITIN-DAAIGDYVIRADRTRLKQVLINLLSNAIKYNRPQGEVL 1044 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + V L V DTG G+ ++ +PF ++ + EGTG+GL +++ ++ Sbjct: 1045 VQVAVQD-GFVRLEVSDTGYGIPATRRQELFQPFSRL-GVEDADIEGTGIGLTISRRLMK 1102 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 G + S +G I P Sbjct: 1103 MMGGAIGMDSEEGRGCTFWIELP 1125 Score = 74.7 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 51/508 (10%), Positives = 124/508 (24%), Gaps = 42/508 (8%) Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 I L + + + + + G L P+ + +AA+P Sbjct: 25 AILRTLLEDIERGRHESLEGLHRAVHSLVGSAGIHQLMPVSEAARNLERVVAAIP----A 80 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 E G + + + +A+ + V + + + Sbjct: 81 DEVQDEHGLHAMRKALANLEAQAVNPGHGFVPQISRRRTEIPRIVIVDDDEEQAGWLRSM 140 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLNQYTKKQ 287 R +V E A L TE + + L + + Sbjct: 141 LERAGYRVDVFHELAAFAAADLTTEPPSAVIMDRVLLEGDNAGTRVIAKLKKQSLNGFPV 200 Query: 288 YFGTLQNNSKESFEYLSHRN-----HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-- 340 +++ + P S + + P + Sbjct: 201 IGISMRRDMAAKLAAYRAGASCFLTKPVDSDALLRVVADSAALMPMEPFRVLLVDDDADQ 260 Query: 341 -------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 L A + L V ++ L+ + + + + ++ R D Sbjct: 261 RAAYGLILRQAGMTVLDAGDPLEVPEMLEDFAAEVLVLDMVMPECSGPELAVILRDDERY 320 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +++ + + P R R+ + Sbjct: 321 AQVPIVYLSMETRASRQFSALNCSGDHFLAKPVEPHPLVAAVALHARRF--RQTREQTES 378 Query: 454 LCSILEA-----------TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 L + L ++ + G ++ N ++ GY +++ + + Sbjct: 379 LRATLYERERQQQQQALDAHAIVSATDAAGTLIYVNDRFCEISGYSRNELVGQNHRIVKS 438 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 + + K+ +L + I ++ Y Sbjct: 439 SEHLPEFYLDMWNTIVCGN--IWRGEVCNRRKDGRLYWVETSIVPFLDNTGRPYQYVSIR 496 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586 DIS K+ + +L ++ E +S S Sbjct: 497 TDISRIKKAELRLRLLERAVEASASSIS 524 >gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1765 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 133/782 (17%), Positives = 283/782 (36%), Gaps = 53/782 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D +G + + + G A M+ +++ Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DQNGQIVFSNSRCQQLFGYDAKAMLALQI 557 Query: 119 C-----DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 ++ + + + + + R +G I L+ LP Sbjct: 558 ETLLPEELRHLHTGERLDFLREGRDRPMASARHVRALKSDGGEFVAEIALSILPS----- 612 Query: 174 EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLH--------EIKKGHSSVEKEKYDI 224 +F G R + + + +F L + G V + D Sbjct: 613 DFDGRRQVAASIRDMTQKIMVEQKIRDSELRFRGLVTNIPGAVYRTRIGEVWVIEYVSDN 672 Query: 225 FSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 ++ + + ++N+ + T D L + +++ + + + + Sbjct: 673 IAEITGYAASQFIENRQRTFTSLILEDDRALCNQHIERALAQQETFEVEYRIRHRDGSIR 732 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF----DEGENLTPETVDKCPIPF----FV 335 + + + + + S + + P +V Sbjct: 733 WVHEKGKASYSEEGLPLWFDGSIDDVTESKLAIDEIEASRQQLTNITESIPCTVYQLRWV 792 Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + + + L + + + ++ + + + + +SD Sbjct: 793 SPTDRSFTFLSGAALAMLGLHREELLRDFNIIAERIFDEERPEVISALAG---KSDDQLR 849 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R + M + NG + + + + ++ + Sbjct: 850 WI--REFRYRHPNGGIRWMEAGASGHYADDGSII-WNGYVMDVTERKSIEEELAVSEAHF 906 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ + + GI ++ +G+IL N + G +++ P L V Sbjct: 907 KALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQDKDVAKAQFK 966 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570 E++ + + L + + + L S ++M D++E K ++ Sbjct: 967 ELVEGKIDH-YRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDE 1025 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK A+ S K DFLA +SHEIRTP+ AIIG S++ + + + Y I Sbjct: 1026 LLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQL----DKKQKNYLEKI 1081 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +R+ +L I+ND+LD SKIE+GK+++ LD + + + A +K+I + + Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAV 1141 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745 A N+PR +L D + Q+ +N+++NAI FT G ++++S + + + VRD+G Sbjct: 1142 APNVPRHLLGDPLRLGQVLINLMNNAIKFTERG-EVLLSLSLVEQQNDDVVLRFSVRDSG 1200 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+T + K K F Q S + GTGLGL ++K +V+ G + S G+ Sbjct: 1201 IGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFF 1260 Query: 806 II 807 Sbjct: 1261 FT 1262 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 55/515 (10%), Positives = 140/515 (27%), Gaps = 30/515 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142 F ++D G L ++SE + K +G +++ + + ++ N LK QN Sbjct: 405 FYCSLDPDGQLAQVSEGVTKVLGIPP-ELLKRKYQRLFSANPLNEKNWEYTDLALKGQNV 463 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + L +G + + + P+ S E + A Sbjct: 464 PPHQIELVDAKGQARRLDVFM--QPLVSDTGELMSVE--MLFTDVTEQFSAAAWSNAVLE 519 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F + + + H + L + Sbjct: 520 AAPEAMLIVDQNGQIVFSNSRCQQLFGYDAKAMLALQIETLLPEELRHLHTGERLDFLRE 579 Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S+ + + + + + + Sbjct: 580 GRDRPMASARHVRALKSDGGEFVAEIALSILPSDFDGRRQVAASIRDMTQKIMVEQKIRD 639 Query: 318 GENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V P + G + Y + + +T Y + IE + Sbjct: 640 SELRFRGLVTNIPGAVYRTRIGEVWVIEYVSDNIAEITGYAASQFIENRQ---RTFTSLI 696 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L D+ A+ + R+ + I+ + + ++ + +G Sbjct: 697 LEDDRALCNQHIERALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYSEEGLPLWFDGSI 755 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490 + ++++ ++E QL +I E+ + + + + A + G E Sbjct: 756 DDVTESKLAIDEIEASRQQLTNITESIPCTVYQLRWVSPTDRSFTFLSGAALAMLGLHRE 815 Query: 491 DILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++LR + + L LR + + + Sbjct: 816 ELLRDFNIIAERIFDEERPEVISALAGKSDDQLRWI--REFRYRHPNGGIRWMEAGASGH 873 Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580 + D++E K + +L+ ++ + Sbjct: 874 YADDGSIIWNGYVMDVTERKSIEEELAVSEAHFKA 908 Score = 45.4 bits (106), Expect = 0.044, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 80/270 (29%), Gaps = 11/270 (4%) Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS------DNNAI 381 + FV G ++ A+ + + K++ V + ++LLD + + Sbjct: 262 QAGQASFVDDKGTVYLASVAEVAKLKWRVVVMVPKHELFASLLDDIASAILNLSLLTLLL 321 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R A I + IP ++ + R Sbjct: 322 LLTCYIAAKRLTRPLEALESGILAFGQGKAQELTIPKGAVSEIVTLSETFNQMAALLAER 381 Query: 442 INKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ + +++ SD ++ +G + + V+K+ G P E + RK + Sbjct: 382 -EQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKVLGIPPELLKRKYQRL 440 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--T 557 F Y L + + + + + L + + S+ Sbjct: 441 FSANPLNEKNWEYTDLALKGQNVPPHQIELVDAKGQARRLDVFMQPLVSDTGELMSVEML 500 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 D++E + + A + Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIVDQ 530 >gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1043 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 134/785 (17%), Positives = 270/785 (34%), Gaps = 54/785 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 ++ +SE F V W D ++ + G + IG Sbjct: 128 DRLLAEAARQESEERFEIMADTAPV-MIWMSDTDKLCDYFNKPWLEFTGRTLAEEIGNGW 186 Query: 119 CDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 ++ + + + + L +G Y + A+P ++ + F G Sbjct: 187 AQGVHPDDVERCLDTYTTAFDARLDFKIEYRLKRFDGE--YRWLLDTAIPRFNADGTFVG 244 Query: 178 FRGFGIVHVNRVDNDPRAL--GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 + G I +R+ + + L + + ++ + +P + Sbjct: 245 YIGSCIDISDRIQAEYERANALAATQATANALAASEARYRAIGESIPFGVWICNPNGSIN 304 Query: 236 MKN--------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + + S L+ D ++ + S + F I+ N Sbjct: 305 YLSDSFLELIGMTLEECQKSGLSGKLPPADVDRTCSEWRECINSGSVWDCEHKFLGIDGN 364 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS 337 +T ++++S ++ + + + ++ F + Sbjct: 365 YHTILSRGVPVRDSSGAIANWVGINLDITERKQTEAALQKASQEIVNILESIGDGFASFD 424 Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 Y N + + + P+L D + ++ +++ Sbjct: 425 GEWRYTYINRKGEEILGKQRSQILGKIVWE----VFPELKDTPYYEQILQAKAENLNFEY 480 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + A+ + P + + + ++ + + +L S Sbjct: 481 EHLFPPL---DNRWFALRWHPTPE--------GMCVYFQDITERKLTEAALRATEEKLKS 529 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLT 514 + A S GI + G I N ++ GY E + R + + Sbjct: 530 FVAAASIGIVFADIYGSITDANAEFLRIVGYSREHLRRGELRWTEITPPEYLPLDEQSIK 589 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSH 573 E + EK + + + + I + + D++E KQ + L Sbjct: 590 EGKKTGVSPPYEKEYI--RSDGSRVPVLIGFILVGEQREESVAFILDLTERKQLEAALHQ 647 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + + + K +FLA +SHE+RTPL A++G+++++++++F + IDR+ Sbjct: 648 RAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRSRKF---DEEKTARALETIDRN 704 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + ++ DLLD+S+I +GK+ L+ V L V AI V A K I I Sbjct: 705 TKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIETVIPAAQAKSIQIIPLLDER 764 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGM 748 I RI D ++Q+ N+LSNAI FTP+GG + I+ N + V DTG G+ Sbjct: 765 IERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVGSELEGNFCAEIEVTDTGQGI 824 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEII 807 L F Q ++ G GLGL + + +V+ + G S KG+ + Sbjct: 825 NPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRHLVELHGGTVKADSQGSGKGSAFTVR 884 Query: 808 FPLYD 812 PL + Sbjct: 885 LPLPE 889 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 17/176 (9%), Positives = 47/176 (26%), Gaps = 10/176 (5%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 P E D + + + + + + I + + + + N Sbjct: 108 RLGRLVPAVKRALREAQERRDRLLAEAARQESEERFEIMADTAPVMIWMSDTDKLCDYFN 167 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + + G + + + + + + T L + + + Sbjct: 168 KPWLEFTGRTLAEEIGNGWAQGVHPDDVERCLDTYTTAFDARL--DFKIEYRLKRFDGEY 225 Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 L + Y + DIS+ Q + + + A + ++ LA Sbjct: 226 RWLLDTAIPRFNADGTFVGYIGSCIDISDRIQAEYE----RANALAATQATANALA 277 >gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS] Length = 1630 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 138/755 (18%), Positives = 270/755 (35%), Gaps = 39/755 (5%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVS----DILHIDPNNHI 133 W D H + + + + ++ G D+ D + + Sbjct: 853 DNIPQLIFWK-DIHSVFLGCNRRVAQFVQLKNPKEIKGKTDFDLVWKEHAEYFQDQDRRV 911 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 L ++ ++ G+ + +P++ + + G G V Sbjct: 912 M--LTNIPEYHTIESITRPNGS--VFWGETNRIPLHDDSGKVVGILG--TVEDITARKQA 965 Query: 194 R-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYA 248 AL K ++ + L + + + Y++ KN V T + Sbjct: 966 EDALKKANERVTTVLDSLDSAVYVSDMQTYNVLFVNKYAQKYYNKNDVIGKMCWQTFHIG 1025 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSH 305 L+T E + + Y Sbjct: 1026 QTGPCNFCTNAQLITEEGQPTDVHTWEFEDTVQNRWFYVQDRAIPWDDGRLVRLSVYTDI 1085 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364 E E + + + + GN N +L +T Y S D++ Sbjct: 1086 TPRKRALEALREREAYLHAIFENAAVGIMLANAEGNFINCNIKWLEMTGY-SCDELYQLT 1144 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L P+ D + ++ N + NQ Sbjct: 1145 YLDVTHPNDIEISRQHFGPLTRNAID----SYHIEKRFVRKNG-SFFWADVSVTVIRNQQ 1199 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 G+ + + + + + + ++E ++ I + + N A + Sbjct: 1200 GIFDSVVGVIVDITERKQAEEALRASEARYRGVVEDQTELICRFLPDTTLTFVNHAYCRH 1259 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G E I+ F+ + + + +L ++++ + T + Sbjct: 1260 LGIQREAIIGTKFSKLIPEVARKDVLAHLQQLINQ-KDSMIVYEHPIETANGHKGWQQWS 1318 Query: 545 IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + + + DI+E KQ + KL AK+ AE + KS FLA +SHE+RTPL Sbjct: 1319 DRAITDDAGRILEIQAVGRDITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPL 1378 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+G+++++ Y E I+RSGN +L ++ND+LD+SKIE+GK+ L+ Sbjct: 1379 NGILGYAQIMGRDSH---LCENYREGIGIIERSGNYLLTLINDILDLSKIEAGKIELYPT 1435 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 ++ + + Q+ A +K I +++P + AD + ++QI +N+L NA+ FT Sbjct: 1436 DFYFNQFIQAITEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFT 1495 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 GG I++ ++ +V DTG+G+ +L+ PF Q+ N EGTGLGL Sbjct: 1496 KQGG-IVLKVGLEKE-KIRFQVEDTGIGIATEDLDNIFSPFLQVGNPNYRA-EGTGLGLS 1552 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + +VD G+ ++ S +G+ ++ L + S Sbjct: 1553 ITQKLVDMMGGELHVESVLGQGSRFWMVLDLPEVS 1587 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 45/537 (8%), Positives = 137/537 (25%), Gaps = 51/537 (9%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWPI 152 +++++L G ++ +++ + + + L + + Sbjct: 594 WLQVNDKLCDLFGYTRDEIFQKEWREITHSDDLAAHLEQRNQLLCGKSDGYTMDKRFIRK 653 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G ++ +L+ + + F ++ L + ++ + + Sbjct: 654 DGNTIFT--NLSVRCVRNLAGTVDYF--VVLIQDITERKQAENLLREKEEFLRLIIDNIP 709 Query: 213 GHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDV---LKTEKYPLLTS 264 ++ L + + V D L ++ + Sbjct: 710 QLIFWKEINNVYLGCNKAFAKLLIESKQPVDVVGKTDFDLNLPFDQAQNLSETDSEIMET 769 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-------- 316 + E+ + N + L +++ + L + + Sbjct: 770 DTPQYHYVEEIYQSNGK-RWVESNKIPLHDSTCQVIGILGTSEDITERKQAELLLTEYNQ 828 Query: 317 --------------EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIE 361 E + +D P F ++ N + K+ +I+ Sbjct: 829 TLERDVAERTRALREQKAFLRLIIDNIPQLIFWKDIHSVFLGCNRRVAQFVQLKNPKEIK 888 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + + VML I + +I + Sbjct: 889 GKTDFDLVWKEHAEYFQDQDRRVMLTN-----IPEYHTIESITRPNGSVFWGETNRIPLH 943 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480 + + + G + + + ++ ++ ++L++ + + + + +L N+ Sbjct: 944 DDSGKVVGILGTVEDITARKQAEDALKKANERVTTVLDSLDSAVYVSDMQTYNVLFVNKY 1003 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 K Y D++ K P I + T + + Sbjct: 1004 AQKY--YNKNDVIGKMCWQTFHIGQTGPCNFCTNAQLITEEGQPTDVHTWEFEDTVQNRW 1061 Query: 539 LSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARV 592 ++ DI+ K+ L + E++ LA Sbjct: 1062 FYVQDRAIPWDDGRLVRLSVYTDITPRKRALEALREREAYLHAIFENAAVGIMLANA 1118 Score = 123 bits (310), Expect = 9e-26, Method: Composition-based stats. Identities = 53/532 (9%), Positives = 133/532 (25%), Gaps = 52/532 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-----ILHIDPNNHIGDLLKRQ 140 W+ + S + +G +++ CD ++I L + Sbjct: 456 LWDWNLETQEVYFSPRWKEMLGYADHEIL--NHCDEWHKRIHQTERAQTMDNIAAYLDK- 512 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + + Y+ + + +++ + F G + ++ Sbjct: 513 DIPTYENIHRLQHRHGPYIWVLARGIALWNAQGKAIRFVGTHV--DLTEQKQAEEALRKS 570 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257 ++ H E+ ++ H DD+ Sbjct: 571 QERIRHFFELPLIGMAITSPTKGWLQVNDKLCDLFGYTRDEIFQKEWREITHSDDLAAHL 630 Query: 258 KYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSL 311 + LL + + F + N ++N + ++ Sbjct: 631 EQRNQLLCGKSDGYTMDKRFIRKDGNTIFTNLSVRCVRNLAGTVDYFVVLIQDITERKQA 690 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT--KYKSVDDIEIAGGLST 368 E E +D P F N+ N +F L + VD + Sbjct: 691 ENLLREKEEFLRLIIDNIPQLIFWKEINNVYLGCNKAFAKLLIESKQPVDVVGKTDFDLN 750 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L + + +M + + + + + + Sbjct: 751 LPFDQAQNLSETDSEIMETDTPQYHYVEEIYQSN------GKRWVESNKIPLHDSTCQVI 804 Query: 429 PQNGIEPEDVDTRINK------------------RKMEIEVMQLCSILEATSDGIAIINR 470 G + + + + R + + L I++ I + Sbjct: 805 GILGTSEDITERKQAELLLTEYNQTLERDVAERTRALREQKAFLRLIIDNIPQLIFWKDI 864 Query: 471 EGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + L NR V++ ++I K + + ++ ++ + + Sbjct: 865 HSVFLGCNRRVAQFVQLKNPKEIKGKTDFDLVWKEHAEYFQDQDRRVMLTNIPEYHTIES 924 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 + + L S T+ DI+ KQ ++ L A + Sbjct: 925 ITR-PNGSVFWGETNRIPLHDDSGKVVGILGTVEDITARKQAEDALKKANER 975 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 52/424 (12%), Positives = 119/424 (28%), Gaps = 27/424 (6%) Query: 185 HVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + +K+F + G E +++ L + Sbjct: 426 QEIDERQQIEKALRASEKRFELAMQGANDGLWDWNLETQEVYFSPRWKEMLGYADHEILN 485 Query: 244 TEYYAHKD---DVLKTEKYPLLTSEESSLPEQEDFHTIN---LNQYTKKQYFGTLQNNSK 297 HK + + +P E+ H + L N Sbjct: 486 HCDEWHKRIHQTERAQTMDNIAAYLDKDIPTYENIHRLQHRHGPYIWVLARGIALWNAQG 545 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDK---CPI-PFFVYSHGN-LFYANPSFLLLT 352 ++ ++ + +E + E + P+ + S N L Sbjct: 546 KAIRFVGTHVDLTEQKQAEEALRKSQERIRHFFELPLIGMAITSPTKGWLQVNDKLCDLF 605 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y D+I + ++ +SD + I+ + Sbjct: 606 GYTR-DEIFQKEWREITHSDDLAAHLEQRNQLLCGKSDG----YTMDKRFIRKDGNTIFT 660 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 N + + + + + + + L I++ I Sbjct: 661 -NLSVRCVRNLAGTVDYFVVLIQDITERKQAENLLREKEEFLRLIIDNIPQLIFWKEINN 719 Query: 473 IILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + L N+A +KL PV+ + + F + L + ++ +EI+ D Q Sbjct: 720 VYLGCNKAFAKLLIESKQPVDVVGKTDFDLNLPFDQAQNLSETDSEIMETDTPQYHYVEE 779 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + ++ + L S+ T DI+E KQ + L+ + E++ + + Sbjct: 780 IYQSNGKR--WVESNKIPLHDSTCQVIGILGTSEDITERKQAELLLTEYNQTLERDVAER 837 Query: 586 SDFL 589 + L Sbjct: 838 TRAL 841 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 37/329 (11%), Positives = 90/329 (27%), Gaps = 21/329 (6%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL--SAYFDEGENLTPETVD 327 + + + + L E + Sbjct: 391 ALRNAEDHLKEYNRILEIQVAERTEELAQQNIRLQQEIDERQQIEKALRASEKRFELAMQ 450 Query: 328 KCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + ++ Y +P + + Y + + + + + L Sbjct: 451 GANDGLWDWNLETQEVYFSPRWKEMLGYADHEILNHCDEWHKRIHQTERAQTMDNIAAYL 510 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 I +H +Q + + N + + G + + + + Sbjct: 511 ----DKDIPTYENIHRLQHRHGPYIWVLARGIALWNAQGKAIRFVGTHVDLTEQKQAEEA 566 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ E G+AI + L N + LFGY ++I +K + + Sbjct: 567 LRKSQERIRHFFELPLIGMAITSPTKGWLQVNDKLCDLFGYTRDEIFQKEWREITHSDDL 626 Query: 507 SVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563 + ++L T++K + +L + + + + + DI+E Sbjct: 627 AAHLEQRNQLLCGKSDGYTMDKRFIRKDGNTIFTNLSVRCVRNLAGTVDYFVVLIQDITE 686 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARV 592 KQ +N L K +FL + Sbjct: 687 RKQAENLL-----------REKEEFLRLI 704 >gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062] gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062] Length = 767 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 186/639 (29%), Positives = 318/639 (49%), Gaps = 20/639 (3%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + N + P + + ++ + V + + P V+ Sbjct: 130 VARENTGLSKPEQDAFDKIARALGAEKKEEQSAKVAVAPAEAVEEVPATPEEAAAVAVAE 189 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKE 298 + ++ P +E N+ + ++ ++ Sbjct: 190 TDVVEHEASEETAKTPDNIIPLPAEPTPREEAIEAEPKQDNVTHVVLPRVPPDIEEAAER 249 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 + E + A D P +D+ PI V ++ YAN + L L Y+ + Sbjct: 250 AREKTGRIPDKPIVAPID------PRLLDRLPIGVAVVRDRDVVYANDTLLELLGYERFE 303 Query: 359 DIEIAGGLSTLLDAPK----LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + AGGL + P+ S + V + ++ ++ AR+H + WN +L ++ Sbjct: 304 ALNEAGGLEAIFAEPEECPTPSPQTVDRIVHVRLAEGGVLSVDARMHAVPWNGAQALMIS 363 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + V + + + +L S+L +DG+ ++++ GII Sbjct: 364 VVEKIQNEATADTSAPAQHTSAPVASSSQVEHLHTRIEELESVLATATDGVLVMDQRGII 423 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGS 532 S N + LF +D+L PFT FL + YL +++ + L + + Sbjct: 424 RSANHSAEALFNASEDDLLGAPFTTFLADESHIAALDYLDGLVANGVSSVLNDGREIICQ 483 Query: 533 TKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 T + + + + ++ + + DI+++K+ + +L A+ AE+ ++HKS++L Sbjct: 484 TLDGDIFPTFLSMGRVSSANEQLFCAVLRDITQFKRAEEELVSARYKAEEANTHKSEYLT 543 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 ++SHEIRTPL A+IGFSEV++ +RFG LGN RY EYA I RS + +L ++NDLLD++KI Sbjct: 544 KISHEIRTPLNAVIGFSEVMQEERFGELGNVRYKEYARDIHRSCSHMLTLINDLLDLAKI 603 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E+GKM+L FE VS + ++E ++L+Q ANE+R++IR S ++P+I+AD ++++QI LN Sbjct: 604 EAGKMDLAFEAVSAADIINECVALLQPQANEQRVIIRASTPLSVPKIVADPKTLRQITLN 663 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNAI F SGGQ+I+S N EV LRVRDTG GM+ +LE A++PF ++ S Sbjct: 664 LLSNAIKFNRSGGQVIVSLVLDPNGEVHLRVRDTGHGMSKADLEAALQPFRRLNASAS-- 721 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EG+GLGLPL KA+V+AN F I S +GTL E+ FP Sbjct: 722 TEGSGLGLPLTKALVEANRASFSINSEEDEGTLAEVTFP 760 >gi|298243600|ref|ZP_06967407.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297556654|gb|EFH90518.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1121 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 113/743 (15%), Positives = 242/743 (32%), Gaps = 49/743 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W G + ++ + ++ + + L + Sbjct: 394 LVWTTSPDGRVDYCNQRFQEVTQADFEQIRDYGWRQYLHPEDAERVLMLRQHSLTTGELF 453 Query: 144 YGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G T Y A+P+ + + FG K ++ Sbjct: 454 ESE--HRLKDGQTGAYRWFLARAMPVRDEAGQIV--KWFGTCTDIDEQKQTEQRLKESEE 509 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLK 255 +F L E V + ++ + L + + + Sbjct: 510 QFRVLAETVPQLVWVARPDGQHEYTNQHWCDYTGFTLENVQSDRWAHLQCIHPDDRERNR 569 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L + + E+ H ++N + + ++ Sbjct: 570 ALWQHALETGDMFEYEERLRHAQTGEYRWFLARALPVRNEAGQIVKWFGTSTDIEEQKRV 629 Query: 316 D----EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + E + + P +V L Y N + T L L Sbjct: 630 EQHLKESQESLRVLAETVPQLVWVRRSDGLYEYTNQRWCDYTGLTLEQV---QSDLWAYL 686 Query: 371 DAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + + D T AR+ Q + ++ + + Sbjct: 687 QVIHPGDREGNRAHLQRALDTGTMYEHEARVRNAQT--GEYRWLLMRAMPVRDETGQIVK 744 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYP 488 G + + + + + ++ +++++ GI + E +++ N A + GY Sbjct: 745 WFGTGTDIDERKRMEEALRQSQERIRALIDSNIIGIVSVEGEEDVLVEANDAYLHMTGYT 804 Query: 489 VEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 ED+ + + L E+++ E + + + +I Sbjct: 805 QEDVRSRALSVESTTPPEHAPLFQRALQELVTRGQHTPFETELVCQDGSRLPVLVGGVIF 864 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + D S K+ + + K DF++ SHE+R PLTA+ Sbjct: 865 QERP-RRVVAFVLDNSARKELEQR--------------KDDFISMASHELRNPLTALKMQ 909 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + ++ Q + + N ++ +V +LLD+SKI++G++ E V LD Sbjct: 910 TTLLHRQL---AKQGIQAPALSSMKTQINKLIRLVEELLDVSKIQAGRLEYRQETVDLDA 966 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + E + +Q I++R + ++ LAD + Q+ N+LSNAI ++P + Sbjct: 967 LLREIANTMQQTNPSHTIVMRGAVQTSL---LADRDRLGQVFTNLLSNAIKYSPGAETVE 1023 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + T + V +RVRD G+G+ + +K + F ++ S Q G G+GL + +V Sbjct: 1024 MDLSATEDA-VTIRVRDHGLGIPREQRDKIFERFYRVAGSTQRAIPGLGMGLYIVAEIVK 1082 Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809 + G + S G+ + P Sbjct: 1083 RHGGTITVESDVGNGSTFTVTLP 1105 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 44/511 (8%), Positives = 120/511 (23%), Gaps = 24/511 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D + + +G ++G + L K+ Sbjct: 29 LFVLDEADTIVYANASAQAMLGAAPETLVGNSFWRCAPQLVSTSLYQAVRKTKQTRALTE 88 Query: 146 KTTLWPIEGTNLYVPIDLAALP-IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + P+ + + + P I +F G V LD Sbjct: 89 VEYVSPV----IQTWLHVHLSPTIGGLTLQF-HEMGVPAHCQETVPQRESLCMDVLDNVH 143 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + ++ + + S + K V + + Sbjct: 144 AGIVFLTPEGIVLDINEIPLNSAHIRREEVVGKPLVEGPWWSSSPPSQAQLRAAIARASK 203 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E+ + + + + + + + Sbjct: 204 GET-VHFEALVQPREGMNLHLAFAITPRMDAEHHIKYLVLAGIDITARKRAEADIHTF-- 260 Query: 325 TVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 +D P F+ N + +S ++ + G + L Sbjct: 261 -IDAIPQLFWTGRPDGYHDSFNQRW-RDYTCQSTEEAQGEGWMQCLHPED---RQRVRSV 315 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 RL N+ + + G + + + Sbjct: 316 WQRTVQTGGVYETELRLR--HGTTGEYRWFLVRALPVRNETGQIVKWAGTCTDIEEQKRT 373 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++++ L + E + + +G + N+ ++ E I + +L Sbjct: 374 EQQLKESREHLHVLTEMVPQLVWTTSPDGRVDYCNQRFQEVTQADFEQIRDYGWRQYLHP 433 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSLTM 558 + L+ + E + + + + T Sbjct: 434 EDAERVLMLRQHSLTTG--ELFESEHRLKDGQTGAYRWFLARAMPVRDEAGQIVKWFGTC 491 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 DI E KQ + +L +++ + + Sbjct: 492 TDIDEQKQTEQRLKESEEQFRVLAETVPQLV 522 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 26/78 (33%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L +ILE + +++ I+ N + + G E ++ F Q + + Sbjct: 14 SHETLLTILETLPGALFVLDEADTIVYANASAQAMLGAAPETLVGNSFWRCAPQLVSTSL 73 Query: 510 NHYLTEILSLDLRQTLEK 527 + + +E Sbjct: 74 YQAVRKTKQTRALTEVEY 91 >gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1048 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 124/647 (19%), Positives = 245/647 (37%), Gaps = 39/647 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + ++ + +++ + E+ M + ++ L Sbjct: 39 AKQQTEVMQYYQQQEGTSTAALRRHQAGWEEFDRRYRQ--------VMLSSIAGLALMLV 90 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 V++ P+ + + ++ + ++ + LS + Sbjct: 91 VSFLVMRRFINPMYKIVAALRDLAYASGKPPDLEGIEQLQNDRILELTELANAVLSFHDA 150 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + ++ VD+ P + GN+ YAN +FL T Y+ ++ + G + Sbjct: 151 LNDRHRVEKELRKLSLAVDQSPSGIIITDLDGNIEYANQAFLACTGYQKMEVL----GRN 206 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + + + + + + Sbjct: 207 PRFLKDESTLESHYQEMWNTIAAGHTWKGEFYN---RRKDGREYIEANTVAPIKQADGSI 263 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC-----------SILEATSDGIAIINREGIILS 476 I+ + D + ++ L +I+E +DGI I+++G ILS Sbjct: 264 TNYLAIKDDVTDKMKMEVELLRHRDHLAELVEEQTVSIKAIVETAADGIITIDQQGKILS 323 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK 534 N A +FGYP +++ + + S + YL L + + + + Sbjct: 324 FNPAAEVIFGYPAGEMIGSKINRLMPEPHRSQHDQYLRNYLQSGTAKVINTQVEVMALRR 383 Query: 535 EEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + L + ++ ++ DIS K+ + L A++ AE + KSDFLA + Sbjct: 384 DGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKEAEKALVTARQAAEAANRTKSDFLANM 443 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ A+IG S + P + +Y + S + +L I+ND+LD+SKIES Sbjct: 444 SHEIRTPMNAVIGLSHICLQTELTP----KQRDYLEKVHNSAHSLLGILNDILDLSKIES 499 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G++ + P +L+E + +LV K + + +P + D + Q+ N+ Sbjct: 500 GRLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFKLDLPPEVPVNLRGDPLRLGQVLTNL 559 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 + NA+ FT G + E+ + VRD G+GMT + + +PF Q S Sbjct: 560 VGNAVKFTEEGEIAVTVAVVAEAEQEITLSFTVRDNGIGMTQEQCARLFQPFSQADTSTT 619 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + GTGLGL +++ +V+ G+ + S KG+ PL + Sbjct: 620 RKYGGTGLGLSISRQLVELMGGEIRVESEAGKGSSFIFTLPLQKDAA 666 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 25/258 (9%), Positives = 66/258 (25%), Gaps = 18/258 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G ++ ++ G +++G + D ++ + + + +TW G+ Sbjct: 178 TDLDGNIEYANQAFLACTGYQKMEVLGRNPRFLKDESTLESHYQEMWNTIAAGHTWKGEF 237 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI---------VHVNRVDNDPRALGK 198 +G +A PI + + + V + R + L + Sbjct: 238 YNRRKDGREYIEANTVA--PIKQADGSITNYLAIKDDVTDKMKMEVELLRHRDHLAELVE 295 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDD 252 + E ++ I S P M + H+ Sbjct: 296 EQTVSIKAIVETAADGIITIDQQGKILSFNPAAEVIFGYPAGEMIGSKINRLMPEPHRSQ 355 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + L + + Q + + + T + + S Sbjct: 356 HDQYLRNYLQSGTAKVINTQVEVMALRRDGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQ 415 Query: 313 AYFDEGENLTPETVDKCP 330 ++ + + Sbjct: 416 KEAEKALVTARQAAEAAN 433 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 11/145 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143 ID G + + G A +MIG ++ + H ++ + + L+ Sbjct: 315 IDQQGKILSFNPAAEVIFGYPAGEMIGSKINRLMPEPHRSQHDQYLRNYLQSGTAKVINT 374 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ + + ++A+ I R F+ I + + Sbjct: 375 QVEVMALRRDGSTFPLSLAVSAMEIGGEKR-FT-----AIFRDISSQKEAEKALVTARQA 428 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 429 AEAANRTKSDFLANMSHEIRTPMNA 453 >gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1767 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 127/781 (16%), Positives = 264/781 (33%), Gaps = 51/781 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G + + G A M+G+++ Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DQMGLIVFSNTRCQILFGYEASAMLGLQV 557 Query: 119 CDVSDILHID--PNNHIGDLLKRQNTW---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + + L + ++ +G I L+ LP + R Sbjct: 558 ESLLPEALRSNHARDRLQFLREGRDRPMANAKHVRALKADGGEFVAEIALSILPADNEGR 617 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + + + +F L G + + Sbjct: 618 RQVAAS----IRDMTQKLAVEQKIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENI 673 Query: 234 LRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + +S +D L + +++ + + + + Sbjct: 674 ADITGYAASQFIENRQRTFESLILEEDRALCHQHIDRALAQQETFEVEYRIRHRDGSVRW 733 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPF----FVY 336 + + + + + S + + P ++ Sbjct: 734 VHEKGKASYTDEGFPLWFDGSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWIS 793 Query: 337 SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + + + + D ++ ++ + D + V Sbjct: 794 PVDRTFTFLSGAAYHMLGLHRDDLLKDFNIIAERIF-----DEERSEVVRALAGKSEDKL 848 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R + ++ M + NG + + + + ++ + Sbjct: 849 QWVREFRYRHPNGSTRWMEAGASGHICDDGAII-WNGYVMDITERKAMEEELAVSEAHFK 907 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ + ++ GI I+ +G+IL N + G E + L E Sbjct: 908 ALFDGSTIGIVNIDAKGVILDCNDQYCEDMGQSRESLCGMSIFEVLSLQDKETAKAQFKE 967 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKL 571 + + + L + + + L S ++M D++E K ++L Sbjct: 968 LAEGRVDH-YRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDEL 1026 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ + + Y I+ Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+ +L I+ND+LD SKIE+GK+++ P LD + + + A K++ + + A Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746 N+PR + D + Q+ +N+++NAI FT G ++++S + + VRD+G+ Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTERG-EVLLSLNLVEQQNDDVVLRFSVRDSGI 1201 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T + K K F Q S + GTGLGL + K +V+ G + S G+ Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261 Query: 807 I 807 Sbjct: 1262 T 1262 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 55/518 (10%), Positives = 144/518 (27%), Gaps = 36/518 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142 F ++DA G L ++SE + K +G +++ + + ++ N LK QN Sbjct: 405 FYCSLDASGQLAQVSEGVTKVLGMSP-ELLKRKYQRLFTANPLNEKNWEYTDLALKGQNV 463 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + L G + + + P+ S E + A Sbjct: 464 PSHQVELLDAGGHPRRLDLFM--QPLVSDTGELMSVE--MLFTDVTEQFSAAAWSNAVLE 519 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H D L+ + Sbjct: 520 AAPEAMLIVDQMGLIVFSNTRCQILFGYEASAMLGLQVESLLPEALRSNHARDRLQFLRE 579 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYF 315 + + + ++ + L + + + ++ Sbjct: 580 GR--DRPMANAKHVRALKADGGEFVAEIALSILPADNEGRRQVAASIRDMTQKLAVEQKI 637 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGG-LSTLLD 371 + E V P + G++ Y + + +T Y + IE +L+ Sbjct: 638 RDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENIADITGYAASQFIENRQRTFESLIL 697 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + + R I+ + + + + Sbjct: 698 EEDRALCHQH--IDRALAQQETFEVEYR---IRHRDGSVRWVHEKGKASYTDEGFPLWFD 752 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGY 487 G + ++++ ++E QL +I E+ + + + + A + G Sbjct: 753 GSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWISPVDRTFTFLSGAAYHMLGL 812 Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 +D+L+ + S + L L+ + + Sbjct: 813 HRDDLLKDFNIIAERIFDEERSEVVRALAGKSEDKLQWV--REFRYRHPNGSTRWMEAGA 870 Query: 546 KKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580 + DI+E K + +L+ ++ + Sbjct: 871 SGHICDDGAIIWNGYVMDITERKAMEEELAVSEAHFKA 908 >gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1767 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 127/781 (16%), Positives = 264/781 (33%), Gaps = 51/781 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G + + G A M+G+++ Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DQMGLIVFSNTRCQILFGYEASAMLGLQV 557 Query: 119 CDVSDILHID--PNNHIGDLLKRQNTW---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + + L + ++ +G I L+ LP + R Sbjct: 558 ESLLPEALRSNHARDRLQFLREGRDRPMANAKHVRALKADGGEFVAEIALSILPADNEGR 617 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + + + +F L G + + Sbjct: 618 RQVAAS----IRDMTQKLAVEQKIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENI 673 Query: 234 LRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + +S +D L + +++ + + + + Sbjct: 674 ADITGYAASQFIENRQRTFESLILEEDRALCHQHIDRALAQQETFEVEYRIRHRDGSVRW 733 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPF----FVY 336 + + + + + S + + P ++ Sbjct: 734 VHEKGKASYTDEGFPLWFDGSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWIS 793 Query: 337 SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + + + + D ++ ++ + D + V Sbjct: 794 PVDRTFTFLSGAAYHMLGLHRDDLLKDFNIIAERIF-----DEERSEVVRALAGKSEDKL 848 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R + ++ M + NG + + + + ++ + Sbjct: 849 QWVREFRYRHPNGSTRWMEAGASGHICDDGAII-WNGYVMDITERKAMEEELAVSEAHFK 907 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ + ++ GI I+ +G+IL N + G E + L E Sbjct: 908 ALFDGSTIGIVNIDAKGVILDCNDQYCEDMGQSRESLCGMSIFEVLSLQDKETAKAQFKE 967 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKL 571 + + + L + + + L S ++M D++E K ++L Sbjct: 968 LAEGRVDH-YRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDEL 1026 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ + + Y I+ Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+ +L I+ND+LD SKIE+GK+++ P LD + + + A K++ + + A Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746 N+PR + D + Q+ +N+++NAI FT G ++++S + + VRD+G+ Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTERG-EVLLSLNLVEQQNDDVVLRFSVRDSGI 1201 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T + K K F Q S + GTGLGL + K +V+ G + S G+ Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261 Query: 807 I 807 Sbjct: 1262 T 1262 Score = 114 bits (285), Expect = 6e-23, Method: Composition-based stats. Identities = 55/518 (10%), Positives = 144/518 (27%), Gaps = 36/518 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142 F ++DA G L ++SE + K +G +++ + + ++ N LK QN Sbjct: 405 FYCSLDASGQLAQVSEGVTKVLGMSP-ELLKRKYQRLFTANPLNEKNWEYTDLALKGQNV 463 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + L G + + + P+ S E + A Sbjct: 464 PSHQVELLDAGGHPRRLDLFM--QPLVSDTGELMSVE--MLFTDVTEQFSAAAWSNAVLE 519 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H D L+ + Sbjct: 520 AAPEAMLIVDQMGLIVFSNTRCQILFGYEASAMLGLQVESLLPEALRSNHARDRLQFLRE 579 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYF 315 + + + ++ + L + + + ++ Sbjct: 580 GR--DRPMANAKHVRALKADGGEFVAEIALSILPADNEGRRQVAASIRDMTQKLAVEQKI 637 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGG-LSTLLD 371 + E V P + G++ Y + + +T Y + IE +L+ Sbjct: 638 RDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENIADITGYAASQFIENRQRTFESLIL 697 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + + R I+ + + + + Sbjct: 698 EEDRALCHQH--IDRALAQQETFEVEYR---IRHRDGSVRWVHEKGKASYTDEGFPLWFD 752 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGY 487 G + ++++ ++E QL +I E+ + + + + A + G Sbjct: 753 GSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWISPVDRTFTFLSGAAYHMLGL 812 Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 +D+L+ + S + L L+ + + Sbjct: 813 HRDDLLKDFNIIAERIFDEERSEVVRALAGKSEDKLQWV--REFRYRHPNGSTRWMEAGA 870 Query: 546 KKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580 + DI+E K + +L+ ++ + Sbjct: 871 SGHICDDGAIIWNGYVMDITERKAMEEELAVSEAHFKA 908 >gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1177 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 113/645 (17%), Positives = 228/645 (35%), Gaps = 29/645 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + + L + +Y + + ++V Sbjct: 392 TLAHSIIEREKRLRTLSTGLEQAPISVLISDTQGNIEYVNPYFEQLTGY--YSHEVLGKN 449 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEY 302 D L + + P + +F N + + + + +N + + Sbjct: 450 PNLLKSDLNPPELFRDLWRTISAGAPWRGEFINRKKNGALHWQMAHIAPVLDNDGQITHF 509 Query: 303 LSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357 ++ + D E P+ F G Y N ++ +T S Sbjct: 510 IALSEEITARKQADAALNESNERFRTLAQVSPVGIFQTDHDGEYIYVNTTWESITGTTSP 569 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + L + + +L R + Sbjct: 570 QALSSQWDI-HLHPDDQPRVQQRWQETVL---HGNAFHEEYRFLR---GDGTIRWVIGSA 622 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + G + + + + ++ E L S++++ D I +G + Sbjct: 623 APQRDPDRVIQGFVGTLTDITERKQMELELGKERALLRSLIDSIPDLIFYKRADGTYMGC 682 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NRA P ++ ++ +++ + G + Sbjct: 683 NRAFELFCKRPEAALIGHTDQALFSPELAQLLKSGDELVINKN--SCFSHEATGLFGDGH 740 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + I + DI++ + + +L AK+ AE + KS+FLA +S Sbjct: 741 QVPFLIQKSPMHGYQGELLGLIGVARDITQRLRVEQELQQAKEDAEAANRSKSEFLAAMS 800 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ +IG E++ N Y N + +G+ +L++++++LD+SKIE+G Sbjct: 801 HEIRTPMNVVIGMGEILLETPL----NAEQTRYINSMQHAGDALLELIDNILDLSKIEAG 856 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNI 711 +M L LD V +L A + + A + + +L D V+Q+ N+ Sbjct: 857 RMTLEERAFRLDTMVISITDFFRLQALNHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNL 916 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 L NA+ FT GG + + + +N+ + RV DTG+G+ +LE+ F Q +S R Sbjct: 917 LGNALKFTEEGG-VSLHLSLDANQHIHTRVSDTGIGIAPQQLERIFDNFTQEDSSVTRRF 975 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GTGLGL + + + G+ ++ S +G+ + PL + P Sbjct: 976 GGTGLGLAICRRFTELMGGRIWVESIEGQGSTFHMTLPLVLSHTP 1020 Score = 109 bits (272), Expect = 3e-21, Method: Composition-based stats. Identities = 36/380 (9%), Positives = 103/380 (27%), Gaps = 27/380 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRL----CDVSDILHIDPNNHIGDLLKRQNTWYG 145 D G ++ ++ + G Y+ +++G D++ + + W G Sbjct: 422 DTQGNIEYVNPYFEQLTGYYSHEVLGKNPNLLKSDLNPPELF---RDLWRTISAGAPWRG 478 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G P+ + + + F + A +++F Sbjct: 479 EFINRKKNG--ALHWQMAHIAPVLDNDGQITHF--IALSEEITARKQADAALNESNERFR 534 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPL 261 L ++ + +SS + + H DD +++ Sbjct: 535 TLAQVSPVGIFQTDHDGEYIYVNTTWESITGTTSPQALSSQWDIHLHPDDQPRVQQRWQE 594 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----E 317 ++ E+ F + ++ + ++ + + + Sbjct: 595 TVLHGNAFHEEYRFLRGDGTIRWVIGSAAPQRDPDRVIQGFVGTLTDITERKQMELELGK 654 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 L +D P F G N +F L + + G L +P+L+ Sbjct: 655 ERALLRSLIDSIPDLIFYKRADGTYMGCNRAF-ELFCKRPEAAL--IGHTDQALFSPELA 711 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ + + + T + + + E + G+ + Sbjct: 712 QLLKSGDELVINKN----SCFSHEATGLFGDGHQVPFLIQKSPMHGYQGELLGLIGVARD 767 Query: 437 DVDTRINKRKMEIEVMQLCS 456 +++++ + Sbjct: 768 ITQRLRVEQELQQAKEDAEA 787 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 9/162 (5%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLF 485 + ++ R + +L ++ LE + I + +G I N +L Sbjct: 379 GASEFRTLTLEFRTLAHSIIEREKRLRTLSTGLEQAPISVLISDTQGNIEYVNPYFEQLT 438 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GY ++L K + P + L +S + K L I Sbjct: 439 GYYSHEVLGKNPNLLKSDLNPPELFRDLWRTISAGAPWRG--EFINRKKNGALHWQMAHI 496 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + +I+ KQ L+ + + + Sbjct: 497 APVLDNDGQITHFIALSEEITARKQADAALNESNERFRTLAQ 538 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 24/277 (8%), Positives = 64/277 (23%), Gaps = 10/277 (3%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 ++ +S F V + D G ++ G + + + + Sbjct: 518 ARKQADAALNESNERFRTLAQVSPVG-IFQTDHDGEYIYVNTTWESITGTTSPQALSSQW 576 Query: 119 CDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 + + N ++ + +GT + +A P +R G Sbjct: 577 DIHLHPDDQPRVQQRWQETVLHGNAFHEEYRFLRGDGTIR--WVIGSAAPQRDPDRVIQG 634 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLR 235 F G + + L + ++ R Sbjct: 635 F--VGTLTDITERKQMELELGKERALLRSLIDSIPDLIFYKRADGTYMGCNRAFELFCKR 692 Query: 236 MKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + + T+ + L L+ ++ S + + +Q + Sbjct: 693 PEAALIGHTDQALFSPELAQLLKSGDELVINKNSCFSHEATGLFGDGHQVPFLIQKSPMH 752 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E + + ++ E + Sbjct: 753 GYQGELLGLIGVARDITQRLRVEQELQQAKEDAEAAN 789 >gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens GS-15] Length = 1313 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 112/596 (18%), Positives = 229/596 (38%), Gaps = 34/596 (5%) Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 KV+S + + + + +E Q++F + + + Sbjct: 483 KVTSQLPVRIAQGEQISWRPAEVREEQE----LQDNFRLMENALQNSFSELTAINEELEH 538 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 + + A + L T + G++ Y NP+ + Y + + Sbjct: 539 RVTERTAELRIAKEAAENSELQLRSITNSAHDAILMMDHQGSISYWNPAAEQILGYSAAE 598 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + L L+D+ + + L + + + + Sbjct: 599 AL-GKNLHDLLTPERYLADHLTAFSEFQQTGSGNAVGKTLELFARRKDGQEIEVALSLSA 657 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 N G+ + + + + + L + +E + I I +R+G I N Sbjct: 658 VFLNG---AWNAVGLLRDITEQKRINASLRM----LSAAVEHSPVSIIITDRDGRIEYVN 710 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++ GY E++ + + P L E + K+ L Sbjct: 711 PKSCQMTGYAFEELRGQNPRIMKGPTHPPEFYKNLWETILSGREWYG--EFHNRRKDGSL 768 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSD 587 + + I + + +I + K+ + +L++ + AE+ + KS+ Sbjct: 769 VWVMASISPIYDEKGEITHFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANRAKSE 828 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL AIIG S+++ R + Y + + +G + ++ND+LD+ Sbjct: 829 FLAGMSHEIRTPLNAIIGMSDLLAETRL----DGEQSGYLSVVHSAGETLQGLINDILDL 884 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706 SKIE+G + L P SL + + + + + A+ K + S + +P ++ D ++Q Sbjct: 885 SKIEAGMLQLDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLRLRQ 944 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762 + +N++ NA+ FT SGG +++ + + V DTG+G+ +L+ + F Q Sbjct: 945 VLINLVGNAVKFTDSGGSVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFESFSQ 1004 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 +S R GTGLGL +++ + G+ + ST KG+ P + + Sbjct: 1005 ADSSTTRRYGGTGLGLAISRHLAGMMGGEIGVESTVGKGSCFRFTVPFAISRRTEE 1060 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 38/318 (11%), Positives = 85/318 (26%), Gaps = 30/318 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145 +D G + + + +G A + +G L D+ + H+ + Q T G Sbjct: 575 MDHQGSISYWNPAAEQILGYSAAEALGKNLHDLLTPERYLAD-HLTAFSEFQQTGSGNAV 633 Query: 146 ----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + +G + V + L+A+ + + G++ A + L Sbjct: 634 GKTLELFARRKDGQEIEVALSLSAVFLNGA------WNAVGLLRDITEQKRINASLRMLS 687 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 H + + + + +S ++ L Sbjct: 688 AAVEHSP--VSIIITDRDGRIEYVNPKSCQMTGYAFEELRGQNPRIMKGPTHPPEFYKNL 745 Query: 262 LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + S +FH + + + + E ++ R E Sbjct: 746 WETILSGREWYGEFHNRRKDGSLVWVMASISPIYDEKGEITHFVGVREEIEKQKKLQEEL 805 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + AN + FL ++ + G+S LL +L Sbjct: 806 ANIAQLEKVA--------RDRAEQANRAKSEFLAGMSHEIRTPLNAIIGMSDLLAETRL- 856 Query: 377 DNNAIKPVMLYRSDRTCI 394 D + + S + Sbjct: 857 DGEQSGYLSVVHSAGETL 874 >gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 1563 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 190/627 (30%), Positives = 308/627 (49%), Gaps = 33/627 (5%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 +++ + + + + F +++ K + + L T K Sbjct: 945 EEEDREIEAVAASLETDDAADEREFFEETAAFESEDKAAEVADEPKKTGQVIPLATVKPR 1004 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L+ + S L E + + L+ + ++ L E Sbjct: 1005 LVPVDTSGLSRPER----QAFRKIAEALGARLEGDLEDFDAPDPEEPVDDLPPEVPEAGP 1060 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS---- 376 + P +D+ PI + + YAN + L + Y+S+ + AGGL L Sbjct: 1061 IDPSLLDRLPIGIAIAHDREVLYANKALLRMLGYRSIAALSEAGGLEALFIDDAEELPDE 1120 Query: 377 --DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D + + + SD + A +H++ WN L ++ + P + Sbjct: 1121 GMDGEVDETMKMRLSDGGVLNVDAHMHSVPWNGSRGLMISITERKVKPAPAAAAPSSPNF 1180 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + R ++ ++ +ILE +DG+ ++++ G IL N + LF D++ Sbjct: 1181 F--AEVRAELDSARNQIAEMDTILETATDGVLVLDQNGTILKVNGSAEALFSANRSDMIG 1238 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL---P 549 P T FL + YL + + L + LG L+ L + I ++ Sbjct: 1239 APLTEFLAPESHRAAADYLDGLSRNGVASILNDGREVLGKVPTGGLIPLFMTIGRISGTK 1298 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y + DI++WK + +L+ AK+ AE SS KSDFLA++SHEIRTPL AIIGFSEV Sbjct: 1299 DDVKYCAVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEV 1358 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + +RFGP+GN RY +Y I SG+ ++ ++NDLLD+SKIE+GK++L F VS ++ ++ Sbjct: 1359 MMEERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFSAVSTNDVIN 1418 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E ++L+Q AN +R++IR S ++P ++AD RS++QI LN+LSNAI + SGGQ+I+ST Sbjct: 1419 ECVALMQPQANRERVIIRASLPESVPDVVADPRSLRQIVLNLLSNAIKYNKSGGQVILST 1478 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-------IRGEGTGLGLPLAK 782 SN EV LRVRDTG GMT+ +L A++PF Q+ S + + K Sbjct: 1479 ALESNGEVALRVRDTGTGMTSKQLAAALEPFRQLHTSSRGGGTGLGLPLT---------K 1529 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 A+V+AN F+I STP +GTL+EIIFP Sbjct: 1530 ALVEANRASFHIDSTPDQGTLVEIIFP 1556 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 127/332 (38%), Gaps = 13/332 (3%) Query: 5 SIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSN 64 SI+ P++I + + + + I + E + E ++ T ++ ++ Sbjct: 332 SILETPDEIEEGSAE------TAEDIAADADGEDAGSERSEPEAAAVEEATAEDTAGDTD 385 Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T D + FVF P R VRF W +D +S+E + +G + ++G+ +V++ Sbjct: 386 T---DQNDDFVFQPRRRPVRFAWKMDIDQRFTFLSDEFAEVLGPSSTDIVGLTWQEVAEA 442 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 +DP HI L R++TW GKT WP+ G L VP+D+AALP + RNR+F G+RGFG+ Sbjct: 443 FDLDPRGHIARALDRRDTWSGKTIDWPVSGAALRVPVDMAALPAFDRNRKFEGYRGFGVC 502 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSL 243 + L + + S + D S++ + V+ Sbjct: 503 RTADAVPERGDLPT---GPVLAVVGAGETVSQETEAGADQLSEEDIARSADTQPDAVAGA 559 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + ++ ++ + +D + + ++ + Sbjct: 560 EASAPTAVADMDDDRAADGDDNKAEVARDDDDAVSETADKSTETPSRDVEALDAAQQQAT 619 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + ++ +T V Sbjct: 620 ADAAAKLAELKPAKPDSFAGKTFLGASAAALV 651 >gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 996 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 143/739 (19%), Positives = 264/739 (35%), Gaps = 44/739 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRL-------CDVSDILHIDPNNHIGDLLKRQ 140 ++ +G + + +G ++ G D L + + K Q Sbjct: 283 KVNKNGNIVYANSAAENVLGLSKSEIEGRTYDNVKWKITDFKGNLFPETELPFELVQKYQ 342 Query: 141 NTWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 Y WP + + A PI+ N F + + Sbjct: 343 KPVYDVRHAIEWPN---GQRKLLSINAAPIFDDNGNFGSI--IATIEDITAYKEKEDTL- 396 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK 255 + E ++ + S + + + + Sbjct: 397 ---HLMKNTLESSINAIAISDLDGYLTYANSASLDMWEYNKEEILGKHITEFWQYKENAI 453 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + L + + N+ + ++ S Sbjct: 454 NVYHYLHENGSWKSEGKAKTKHGNVFDVYSLINLVNDESGKPVAIAGSFVDITKRKSYEE 513 Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E +D PI FV +GN NP+ + Y + + ++ + Sbjct: 514 KLKKSEQQLRNYIDNSPIGIFVIDKNGNYVDVNPAACHIIGYTKDELL----SMNIIDLH 569 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P + A + + SA L I N + ++ G Sbjct: 570 PDNAHELAGQIFEELLENGK---VSAELPFITKNDSLRYWILDAVKLLEDK------YIG 620 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + D + + ++ + ++ E +D I + +G I+ N + GY E++ Sbjct: 621 FTTDITDRKRIEEELRESEERFRTLTEQAADAIIAHDFDGNIVYVNNLACENLGYSKEEL 680 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L E LS + T K+ + + ++ Sbjct: 681 LSMNIADISAYINSYDPKTVYWEKLSPSDSYLV--ETKLRRKDGSYYPAEVKLTRIDLKG 738 Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + +I+ KQ + L ++K AE S KS+ LA VSHE+RTPLT+IIGFS+++ Sbjct: 739 RSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIGFSDIL 798 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + G L N Y + + RSG +LD++ D+LD+SKIESGK LH E VS+ + + + Sbjct: 799 LKGKLGDL-NESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQLMKD 857 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + +A++K + I +I I AD ++QI N++ NA+ FT G + + Sbjct: 858 LKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGS-VTVKLD 916 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N+ + V DTG+G+ + ++ F Q+ + R GTGLGL L + +V+ + G Sbjct: 917 WNDNDML-FSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEMHGG 975 Query: 791 KFYIFSTPAKGTLIEIIFP 809 K ++ S +G+ I P Sbjct: 976 KIWVESEEREGSRFSFIIP 994 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 68/538 (12%), Positives = 169/538 (31%), Gaps = 50/538 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNN--------------H 132 +D+ + ++++ G + +M+G+R + L+ +P+ Sbjct: 141 VDSERRIFKVNKSAELFSGTTSDEMVGLRGGEALRCLNSLSNPDGCGFGQYCQECKVKNT 200 Query: 133 IGDLLKRQNTWYGKTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190 + D + N Y T P I+G Y+ ++ I + + + + Sbjct: 201 VIDTFETGNNHYNVETSLPFMIDGDVKYLTFLISTSLINNDEKP----KVIVSLLDITER 256 Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + + F + E + + +I S ++ +K Y + Sbjct: 257 KKTQKNLNKEKDFFEKVAETSPVCITKVNKNGNIVYANSAAENVLGLSKSEIEGRTYDNV 316 Query: 251 DDVLKTEKYPLLTSEESSLPE-----------QEDFHTINLNQYTKKQYFGTLQNNSKES 299 + K L E + N + + +++ Sbjct: 317 KWKITDFKGNLFPETELPFELVQKYQKPVYDVRHAIEWPNGQRKLLSINAAPIFDDNGNF 376 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 ++ + ++ +L T++ + G L YAN + L + +Y + Sbjct: 377 GSIIATIEDITAYKEKEDTLHLMKNTLESSINAIAISDLDGYLTYANSASLDMWEYNKEE 436 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + + NAI + + + + N + + Sbjct: 437 ILGKH------ITEFWQYKENAINVYHYLHENGSWKS----EGKAKTKHGNVFDVYSLIN 486 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ + + G + + + K++ QL + ++ + GI +I++ G + N Sbjct: 487 LVNDESGKPVAIAGSFVDITKRKSYEEKLKKSEQQLRNYIDNSPIGIFVIDKNGNYVDVN 546 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A + GY +++L N + E+L TK + L Sbjct: 547 PAACHIIGYTKDELLSMNIIDLHPDNAHELAGQIFEELLENGKVS---AELPFITKNDSL 603 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + KL Y DI++ K+ + +L +++ + +D A ++H+ Sbjct: 604 RYWILDAVKLLEDK-YIGFTTDITDRKRIEEELRESEERFRTLTEQAAD--AIIAHDF 658 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 34/292 (11%), Positives = 85/292 (29%), Gaps = 22/292 (7%) Query: 314 YFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + ++ + P + V S +F N S L + S + + + GG + Sbjct: 119 SQRKTDDELKTIYENVPMVIMMVDSERRIFKVNKSAELFSGTTSDEMVGLRGGEALRCLN 178 Query: 373 PKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + +K ++ + + + +TF+ Sbjct: 179 SLSNPDGCGFGQYCQECKVKNTVIDTFETGNNHYNVETSLPFMIDGDVKYLTFLISTSLI 238 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 E + + + ++ + E + E + I +N+ G I+ N A Sbjct: 239 NNDEKPKVIVSLLDITERKKTQKNLNKEKDFFEKVAETSPVCITKVNKNGNIVYANSAAE 298 Query: 483 KLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + G +I + + + N + + + Sbjct: 299 NVLGLSKSEIEGRTYDNVKWKITDFKGNLFPETELPFELVQKYQKPVYDVRHAI-EWPNG 357 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + L I + + T+ DI+ +K++++ L K E + Sbjct: 358 QRKLLSINAAPIFDDNGNFGSIIATIEDITAYKEKEDTLHLMKNTLESSINA 409 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 16/126 (12%) Query: 460 ATSDGI----AIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 ++G+ I N +G I+ N A + G ++++ + + + Sbjct: 14 TMNEGVCFHEIIYNSDGYPVDYKIIDINPAYESIVGLKRDEVVGQ-LASNIYDTGEAPFL 72 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 H ++ + E K ++ + P S + DI+ ++ ++ Sbjct: 73 HTYAKVAETGEQTCFETYFSLFGKHIRITVIS------PNKSKFITIFTDITSQRKTDDE 126 Query: 571 LSHAKK 576 L + Sbjct: 127 LKTIYE 132 >gi|328545129|ref|YP_004305238.1| PAS domain protein [polymorphum gilvum SL003B-26A1] gi|326414871|gb|ADZ71934.1| PAS domain protein [Polymorphum gilvum SL003B-26A1] Length = 1231 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 195/791 (24%), Positives = 322/791 (40%), Gaps = 51/791 (6%) Query: 45 CHDSFEQSNFTDQNQ----ESVSNTNYLDSENTFVFDPIPR---TVRFTWNIDAHGYLKE 97 ++ E ++ E +F R R + DA E Sbjct: 459 TAETPVVPPAAASPAGILAEVPASAEEAGDEAEDLFARAERQGEAARIGISGDAPLRPAE 518 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 I + F R+ + L EG++ Sbjct: 519 IEVAVKSLA--REFDAARQRVLTGATPHAPAEAEEERSALAETELPREAELPAEAEGSSA 576 Query: 158 YVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 P + + A + G R + ++ ++ Sbjct: 577 EAPCEDVEAAAEADETKTREG-------KPTETQPGLRPVEDLEPPAAVAQPDVPSDEAN 629 Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276 + + + T + ++ + Sbjct: 630 EAEAEGAARADAGKEGAAGEAAAEPGPTRGAPAAEGGRVIPFSGRPSTTVPVDTSRLSKP 689 Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 + + L+ + + + + P +D+ PI + Sbjct: 690 EREAFRKIAEALGARLEGDFGDEEPAAEAAPTAPVRPAPAPAAPIDPRLLDRLPIGIAIV 749 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS------DNNAIKPVMLYRSD 390 + YAN + L L Y S++ + AGGL + P D+ + + + + Sbjct: 750 RDREVLYANETLLALLGYGSIEALSEAGGLEAVFVEPDDHWPDTDGDDTLDETLKVRVAG 809 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 AR+H + WN L ++ + + E + + E Sbjct: 810 GGLRRVDARMHAVPWNGGRGLMISVTERQTPPEARP-------TSELGEREAALKAAEER 862 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + ++ +ILE +DG+ +++R G I+ N + LFG D++ P T +L + Sbjct: 863 IAEMDTILETATDGVLVLDRHGTIVKANGSAEALFGASRADMIGAPLTAYLAPESHRSAT 922 Query: 511 HYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWK 565 YL + + L + +G L+ L + I ++ + + DI++WK Sbjct: 923 DYLDGLARNGVASVLNDGREVIGQVASGGLIPLFMTIGRIGNGGEAMKFCAVLRDITQWK 982 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L+ AK+ AE SS KSDFLA++SHEIRTPL AIIGFSEV+ +RFG +GN RY E Sbjct: 983 AAEEELTEAKRQAETASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIGNERYKE 1042 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I SG ++ +VNDLLD+SKIE+GK++L F VS ++ V E ++L+Q AN +R++ Sbjct: 1043 YLKDIRTSGAHIMSLVNDLLDLSKIEAGKLDLSFSAVSANDVVRECVALMQPQANRERVI 1102 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 IR S +P ++AD RS++QI LN+LSNAI F SGGQ+I+ST N EV+LRVRDTG Sbjct: 1103 IRASLPATVPSVVADPRSLRQIVLNLLSNAIKFNRSGGQVIVSTALEPNGEVVLRVRDTG 1162 Query: 746 VGMTNYELEKAMKPFGQIPNSQ-------QIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 GM +L A++PF Q+ ++ + KA+V+AN F+I STP Sbjct: 1163 TGMNAKDLAAALEPFRQVHTARIGGGTGLGLPLT---------KALVEANRAVFHIDSTP 1213 Query: 799 AKGTLIEIIFP 809 +GTL+EI FP Sbjct: 1214 EQGTLVEITFP 1224 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 100/328 (30%), Gaps = 15/328 (4%) Query: 72 NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131 FVF+ R VRF W +D +S E +G ++G +V+D +DP Sbjct: 260 PRFVFEARGRPVRFAWKMDIDQRFTFLSPEFADVLGPATADIVGRTWSEVADRFGLDPRG 319 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 I L+R++TW GKT WP+ L VP+D+AALP + R R F G+RGFG+V V Sbjct: 320 SIARALQRRDTWSGKTVDWPVTDAALRVPVDMAALPAFDRRRVFEGYRGFGVVRVGEAFA 379 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 D +A + + ++ + + P + + + + Sbjct: 380 DAQAAVAARGAVQAADAKAEEAAQAEALAEPLAEPLAEPLAVSPAEKPIEAPAD------ 433 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + +E + E + + E + Sbjct: 434 --IPAGPLAETPAETWAETWAETWAETTAETPVVPPAAASPAGILAEVPASAEEAGDEAE 491 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + + A S + A Sbjct: 492 DLFARAERQGEAARIGISGDAPL--RPAEIEVAVKSLAREFDAARQRVLTGATP-----H 544 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASAR 399 AP ++ + A A Sbjct: 545 APAEAEEERSALAETELPREAELPAEAE 572 >gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 1319 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 130/799 (16%), Positives = 250/799 (31%), Gaps = 107/799 (13%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTT 148 G +++ L +G A +++GM ++ + + + + + Sbjct: 160 PDGNWLRVNQRLCDMVGYQADELMGMSFQQITHPDDLFIDQTFVAQMLAGERPHYTLEKR 219 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + I L + + F I+ N+ + A +R + Sbjct: 220 YLRKNGE--VLWITLTVALVRDDRGKPDYF--ISIIEDNQQRKETEAALRRNEVILHESQ 275 Query: 209 EIK----------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + E Y I+ + P + +Y+ + + Sbjct: 276 HLAKIGNWRWHIANNSHFWSPEIYRIYGRDPGLPPAVYPE----VKKYFTQEGWRAIAQS 331 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + L+++S E + ++ Sbjct: 332 VERCLQNGQPYECDAEVIHEQGDPVWVIARGAALRDSSGAIVELYGTVQDITERKLAEQ- 390 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYAN--------------------PSFLLLTKYKSVD 358 + + + L N S L + Sbjct: 391 -----QLLHNQQVALDTQRRARLAALNLMDDAISARIRAETTSTALRDSEQRLLMAQEGA 445 Query: 359 DIEIAGG---LSTLLDAPK---------------------LSDNNAIKPVMLYRSDRTCI 394 + I L +P+ L ++ + L Sbjct: 446 HVGIWEWDILSGRLFFSPECARLYGRSVEQLCEFHIWQGCLHPDDRARIDQLLSELPHTG 505 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 I + + + GI + + + ++++ QL Sbjct: 506 TPLDIEFRILRPTGEVRWLVSKGSVYRDAQQRPVRLLGINLDITERKQAEQQLR----QL 561 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 L+ + DG+ I + +G I N A GY +++ + T+ TP L Sbjct: 562 SLALKQSPDGVFITDIQGRIEYVNVAFLAASGYQQHEVIGQTPTLLRSGLTPKATYITLW 621 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 + + R + K+ + + + + Y DI+E KQ + Sbjct: 622 DAIHQGQRW--HGEFINRRKDGSHYQVLATVSPIRQENGEVTHYVTVQADITEKKQLGEE 679 Query: 571 LSHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 L + + AE + KS FLA +SHEIRTP+ AI+G + ++K Sbjct: 680 LDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + R ID + +L I+ D+LD+SKI++GKM L SL + Sbjct: 740 DTPDHTQHDR----LEKIDNAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVS 795 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L+ A K + I ++ + D+ ++Q LN +NAI FT G + + Sbjct: 796 ALMSEQARAKGLTIIVDIGDSPAWVHGDITRLRQALLNYAANAIKFTEQGS-VTLRVRVE 854 Query: 733 S---NEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N + V DTG+G++ + EK + F Q S + GTGLGL + + Sbjct: 855 RPLSNGYLLRFEVEDTGIGISPEQREKLFQAFEQADASTTRKYGGTGLGLAITSRLATLM 914 Query: 789 MGKFYIFSTPAKGTLIEII 807 G+ + ST KG+ Sbjct: 915 GGEVGVESTQGKGSCFWFT 933 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + +++ + + E + GIA++ +G L N+ + + GY ++++ F Sbjct: 129 ELMSTQSRLQRSETRFQATFEQAAVGIALVAPDGNWLRVNQRLCDMVGYQADELMGMSFQ 188 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 + + ++ ++L+ + K ++L + + + + + Sbjct: 189 QITHPDDLFIDQTFVAQMLAGERPH-YTLEKRYLRKNGEVLWITLTVALVRDDRGKPDYF 247 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + D + K+ + L + I + Sbjct: 248 ISIIEDNQQRKETEAALRRNEVILHESQHL 277 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 14/256 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + D G ++ ++ G ++IG + L + D + + W+ Sbjct: 572 VFITDIQGRIEYVNVAFLAASGYQQHEVIGQTPTLLRSGLTPKATYITLWDAIHQGQRWH 631 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 G+ +G++ V ++ PI N E + + V V + + LG+ LD+ Sbjct: 632 GEFINRRKDGSHYQVLATVS--PIRQENGEVTHY-----VTVQADITEKKQLGEELDQYR 684 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 HL E+ E+ + Q R K+ + + LL Sbjct: 685 YHLEEMVN-----ERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + I+ + + S ++ + + + SL+A D L Sbjct: 740 DTPDHTQHDRLEKIDNAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVSALMS 799 Query: 324 ETVDKCPIPFFVYSHG 339 E + V Sbjct: 800 EQARAKGLTIIVDIGD 815 >gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN] Length = 1618 Score = 419 bits (1076), Expect = e-114, Method: Composition-based stats. Identities = 136/751 (18%), Positives = 264/751 (35%), Gaps = 39/751 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 DA G + ++ + + G ++ G + VS + L +W G+ Sbjct: 366 TDADGLIDWVNPQYERNTGYPLKEVRGKKPSLVSSGQTPQRTYQQMWSTLLSGQSWQGQF 425 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ Y L+ P++ + + G G+ + +R ++ + L Sbjct: 426 VNQRRDGSIYYDEATLS--PVFDKAGKRIGM--VGLHEDVTERMRAQKELQRRERLLNEL 481 Query: 208 HEIKKGHSSVEKE-----KYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTEKY 259 E + I L + + + Sbjct: 482 LEQQTAIFDNAPPILLVCDGRIRQFNPAFVELMRGTATELLGRDIAVLFNGASSSERFTA 541 Query: 260 PLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAY 314 + ++ +L E+ ++ + Y + L+ + + Sbjct: 542 RVAPRLAQGQALREEATLCRLDGSSYAARLAGRGLKMEGCLTASIWVIEDITEARQAEVA 601 Query: 315 FDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + + F G + + + + D L Sbjct: 602 MREAAERLEIAQEAGKVGVFDVNLESGRVL-WSDKLVAMMGLPPGDQPRGKDAWLACLHP 660 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L T A A I N + + G Sbjct: 661 DDRDRARTHFDECLA---GTATTARA-SWRIVRPGGEVRWFLEAARIFRNADGKAVRVVG 716 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + D + + ++ ++ ++++A + + +G + N A + FG ED+ Sbjct: 717 VYVDIHDQKQLEAQVAEQLDFQQALIDAIPVPLFYKDAQGRYIGFNAAYEQAFGVRREDL 776 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIIIKKL 548 + K ++ Q + + + L L + Sbjct: 777 IGKTVLDLQFLAQAERERFDSDTGAAVAGEQAVHREVDLPYADGAMHHTLFWLHGFSRAD 836 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 T DI++ ++ + L AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S Sbjct: 837 GSPGGAIGTFVDITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSH 896 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + NPR +Y + I ++G +L ++ND+LD SKIE+GK+ + P LD + Sbjct: 897 LALKSGL----NPRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRML 952 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +V A K + + A ++P ++ D + QI +N +NAI FT G +I I Sbjct: 953 EGVADVVGYKAGAKGLELVCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTERG-EISI 1011 Query: 728 STTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + + VRDTG+G+T ++ + + F Q S R GTGLGL + K+ Sbjct: 1012 AVRVQEQDAQRVRLRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKS 1071 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + G+ + S KG+ + PL + Sbjct: 1072 LAELMGGEVGVDSEYGKGSTFWVSLPLERGA 1102 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 44/407 (10%), Positives = 101/407 (24%), Gaps = 27/407 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 P + + + + S P +V YA Sbjct: 225 ASTRPEWMFAMAPPLTQARIDAVRASRQMGHHFD--NGVASALPFSPDAGEVVIDGTTYA 282 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 L + L +D + + S L Sbjct: 283 VGQRSLDWKD----PGGAWQLLVLDDTSALMSPGTRLQVGGVAFVVLSLLGLLVLDLLLS 338 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLS 367 A E ++ ++ P+ + L + NP + T Y ++ G Sbjct: 339 RRRVAAARERFHVLGAALESSPVAVVITDADGLIDWVNPQYERNTGYP----LKEVRGKK 394 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L + + + + + ++ + Sbjct: 395 PSLVSSGQTPQRTYQQMWSTLLSGQSWQGQFVNQR---RDGSIYYDEATLSPVFDKAGKR 451 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRA 480 + G+ + + +++++ L +I + + + + G I N A Sbjct: 452 IGMVGLHEDVTERMRAQKELQRRERLLNELLEQQTAIFDNAPPILLVCD--GRIRQFNPA 509 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +L ++L + V + S L Q L + + + Sbjct: 510 FVELMRGTATELLGRDIAVLFNGASSSERFTA-RVAPRLAQGQALREEATLCRLDGSSYA 568 Query: 541 LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 R+ + L C + DI+E +Q + + A + E Sbjct: 569 ARLAGRGLKMEGCLTASIWVIEDITEARQAEVAMREAAERLEIAQEA 615 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 41/435 (9%), Positives = 111/435 (25%), Gaps = 31/435 (7%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-- 244 A + + + ++ + + R+ Sbjct: 60 LDQAAQAVAGQVQGGGLLGAVSLLGLSEPLLKDMARGLLAPDDSAALERLAVARGRFLIQ 119 Query: 245 -EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 Y D + + P S +L + F T G+ + Sbjct: 120 GVYVMAADGTVVAHETPGQKSTGINLAFRPYFQQAMRGAATVYAAIGSNTKERGLYYAAP 179 Query: 304 SHRNHPSL-----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV- 357 + + + F G + + +P + S + +A+ + Sbjct: 180 LYESETPSSTIIGAVMFKVGFQSVDVQLARVGLPTLLLSPQGVAFASTRPEWMFAMAPPL 239 Query: 358 -----DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 D + + + D S D T A R + Sbjct: 240 TQARIDAVRASRQMGHHFDNGVASALPFSPDAGEVVIDGTTYAVGQRSLDWKDPGGAWQL 299 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----------LCSILEAT 461 + + G+ + + + L + LE++ Sbjct: 300 LVLDDTSALMSPGTRLQVGGVAFVVLSLLGLLVLDLLLSRRRVAAARERFHVLGAALESS 359 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + I + +G+I N + GYP++++ K ++ TP + L Sbjct: 360 PVAVVITDADGLIDWVNPQYERNTGYPLKEVRGKKPSLVSSGQTPQRTYQQMWSTLLSG- 418 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 Q+ + + ++ + + + + D++E + + +L +++ Sbjct: 419 -QSWQGQFVNQRRDGSIYYDEATLSPVFDKAGKRIGMVGLHEDVTERMRAQKELQRRERL 477 Query: 578 AEKESSHKSDFLARV 592 + ++ Sbjct: 478 LNELLEQQTAIFDNA 492 >gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1323 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 127/799 (15%), Positives = 249/799 (31%), Gaps = 103/799 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGK 146 + G ++ L +G A +++GM ++ + D L + + + Sbjct: 158 VSPDGKWLRVNRRLCDMLGYQADELMGMTFQQITHPDDLFIDQTYVAQMLADERQHYTLE 217 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + I L + + F ++ ++ + +R + Sbjct: 218 KRYLRKGGE--VLWITLTVALVKDLKGKPDYF--ISVIEDHQQRKETEEALRRNEGILRE 273 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------KDDVLKTEK 258 + K + D P R+ + SL + Sbjct: 274 SQHLAKIGNWRWNITDDSHFWS--PEIYRIYGRDPSLPPAIYPEVRKYFTQDGWRAIAQS 331 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + L+ N E + ++ Sbjct: 332 VERCLQDGLPYECDAEVIHEQGEPIWIIARGAALRANDGTIVELYGTVQDITERKLAEQQ 391 Query: 319 ENLTPETV-------------------------------------------DKCPIPFFV 335 + + + + Sbjct: 392 LLHNQQLALDTQRRARLAALNLMDDAISARIRAETTSSALRESEQRLLMAQEGAHVGIWE 451 Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 ++ G + +P L + E S L K + + + + I Sbjct: 452 WNMQGGRLFFSPECARLYGRSAEQLSEFKQWHSCLHPDDKPRLDKLLAELP---ASGKPI 508 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 I + ++ + + GI + + + ++++ QL Sbjct: 509 EIE---FRILLPNGDVRWLSSKGSIYRDAQQRPLRLLGIHLDITERKQAEQQLR----QL 561 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 LE + DG+ I + + I N A GY +++ + ++ TP L Sbjct: 562 SLALEQSPDGVFITDTQARIEYVNVAFLAASGYQQSEVIGQTPSLLRSGLTPKATYIALW 621 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 + + R + K+ + + + + Y DI+E KQ + Sbjct: 622 DAIKRGQRW--HGEFINRRKDGSHYQVLATVSPIRQENGAVTHYVTVQADITEKKQLGEE 679 Query: 571 LSHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 L + + AE + KS FLA +SHEIRTP+ AI+G + ++K Sbjct: 680 LDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + ID + +L I+ND+LD+SKI++GKM L SL + Sbjct: 740 D----TPDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVS 795 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +L+ A K + I + + D+ ++Q LN +NAI FT G + + Sbjct: 796 ALMSEQARAKGLTIIVDIGDTPAWVHGDITRLRQALLNYAANAIKFTEQGS-VTLRVRVD 854 Query: 733 ---SNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + V DTG+G++ + EK + F Q S + GTGLGL + + Sbjct: 855 HPLAGGYLLRFEVEDTGIGISPEQSEKLFQAFEQADVSTTRKYGGTGLGLAITSRLATLM 914 Query: 789 MGKFYIFSTPAKGTLIEII 807 G+ + ST KG+ Sbjct: 915 GGEVGVTSTLGKGSCFWFT 933 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 65/196 (33%), Gaps = 10/196 (5%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVM 452 A LH ++ L I R + +++ Sbjct: 83 APLHELRIGAGQDLVQWGILIANGVLISLLSAAMHRSRARETQRWQELSSIQSRLQQSET 142 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + + E + GIA+++ +G L NR + + GY ++++ F + + Y Sbjct: 143 RFQATFEQAAVGIALVSPDGKWLRVNRRLCDMLGYQADELMGMTFQQITHPDDLFIDQTY 202 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568 + ++L+ + + K ++L + + + + + + D + K+ + Sbjct: 203 VAQMLADERQH-YTLEKRYLRKGGEVLWITLTVALVKDLKGKPDYFISVIEDHQQRKETE 261 Query: 569 NKLSHAKKIAEKESSH 584 L + I + Sbjct: 262 EALRRNEGILRESQHL 277 Score = 77.4 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 84/300 (28%), Gaps = 16/300 (5%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKS 356 + E + S+ + + E T ++ + V G N + Y++ Sbjct: 120 RARETQRWQELSSIQSRLQQSETRFQATFEQAAVGIALVSPDGKWLRVNRRLCDMLGYQA 179 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + G + P + + +R R L +T Sbjct: 180 DELM---GMTFQQITHPDDLFIDQTYVAQMLADERQHYTLEKR---YLRKGGEVLWITLT 233 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + + + + + L G N Sbjct: 234 VALVKDLKGKPDYFISVIEDHQQRKETEEALRRNEGILRESQHLAKIGNWRWNITDDSHF 293 Query: 477 TNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + + +++G + + Q+ + + L L + + + Sbjct: 294 WSPEIYRIYGRDPSLPPAIYPEVRKYFTQDGWRAIAQSVERCLQDGLPYECDAEVI--HE 351 Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + + + L + + T+ DI+E K + +L H +++A ++ A Sbjct: 352 QGEPIWIIARGAALRANDGTIVELYGTVQDITERKLAEQQLLHNQQLALDTQR-RARLAA 410 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 82/257 (31%), Gaps = 14/257 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + D ++ ++ G ++IG + L + D +KR W+ Sbjct: 572 VFITDTQARIEYVNVAFLAASGYQQSEVIGQTPSLLRSGLTPKATYIALWDAIKRGQRWH 631 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 G+ +G++ V ++ PI N + + V V + + LG+ LD+ Sbjct: 632 GEFINRRKDGSHYQVLATVS--PIRQENGAVTHY-----VTVQADITEKKQLGEELDQYR 684 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 HL E+ E+ + Q R K+ + + LL Sbjct: 685 YHLEEMVN-----ERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTP 323 + +Q+ I+ + + S ++ + ++ SL+A D L Sbjct: 740 DTPDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMS 799 Query: 324 ETVDKCPIPFFVYSHGN 340 E + V Sbjct: 800 EQARAKGLTIIVDIGDT 816 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 30/301 (9%), Positives = 79/301 (26%), Gaps = 16/301 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILH-IDPNNHIGDLLKRQNTW 143 W + G S E + G A ++ + + + +L Sbjct: 449 IWEWNMQGGRLFFSPECARLYGRSAEQLSEFKQWHSCLHPDDKPRLDKLLAELPASGKPI 508 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + G ++ + IY ++ R GI ++L Sbjct: 509 EIEFRILLPNGDVRWLS---SKGSIYRDAQQRP-LRLLGIHLDITERKQAEQQLRQLSLA 564 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + +Y + + + + ++V T K L Sbjct: 565 LEQSPDGVFITDTQARIEYVNVAFLAASGYQQ--SEVIGQTPSLLRSGLTPKATYIALWD 622 Query: 264 SEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + +F + + Y ++ + Y++ + + E + Sbjct: 623 AIKRGQRWHGEFINRRKDGSHYQVLATVSPIRQENGAVTHYVTVQADITEKKQLGEELDQ 682 Query: 322 TPETVD------KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 ++ + + A +FL ++ + GL+ LL Sbjct: 683 YRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDTP 742 Query: 376 S 376 Sbjct: 743 D 743 >gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM 9941] Length = 1069 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 120/526 (22%), Positives = 219/526 (41%), Gaps = 32/526 (6%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 R L E + F G L ANP+ + Y+S +++ Sbjct: 44 GVRALGRLERGRAAAEEGYRSVFENASEGIFRSTPEGRLLAANPAMARMFGYRSPEEL-- 101 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 +S L S + V + + AR+ + + L + Sbjct: 102 VSEVSDLGRQLWESPQERERFVRRVLEEGSVSGFEARM---RRRDGSLLWASLNGHRVTG 158 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + G + R + +E Q + E + D + + + EG I+ N Sbjct: 159 RDGRLVCLEGTILDITWRRRQQEALEESQRQFRDLFERSVDALLVHDGEGNIVDCNAEAC 218 Query: 483 KLFGYPVEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG--STKEE 536 + GY +++LR L + + L E + + LG ++ Sbjct: 219 RSLGYTRQELLRMNVRDFATNLLRREDRTPGEPTLWERALSGEPGVVAGVHLGEHRRRDG 278 Query: 537 KLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + + + + DI+E K+ + +L AK+ AE S KS+F+A +SH Sbjct: 279 TTFPVEVRVGPVVYGGRRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSH 338 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ +IG +E++ + P EYA I SG +L I+ND+LD SKIE+G+ Sbjct: 339 EIRTPMNGVIGMAELLLDTPLTP----EQREYARTIRSSGEALLAILNDILDFSKIEAGR 394 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 ++L P + + V E +SL+ A+ K + + +P I D ++Q+ N++ Sbjct: 395 LSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIG 454 Query: 714 NAIHFTPSGGQIIISTTHTSNE------------EVILRVRDTGVGMTNYELEKAMKPFG 761 NAI FT G ++++S + + E E+ V+D+G+G+ + + + F Sbjct: 455 NAIKFTEEG-EVVVSVSLSKEEKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFS 513 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 Q S R GTGLGL +++ +V+ G+ + S+P +G+ Sbjct: 514 QADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFS 559 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 40/352 (11%), Positives = 95/352 (26%), Gaps = 13/352 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142 + G L + + + G + + + + D+ L P + +L+ + Sbjct: 73 IFRSTPEGRLLAANPAMARMFGYRSPEELVSEVSDLGRQLWESPQERERFVRRVLEEGSV 132 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL 200 + + +G+ + L + R+ G I R ++ Sbjct: 133 SGFEARMRRRDGSL--LWASLNGHRVTGRDGRLVCLEGTILDITWRRRQQEALEESQRQF 190 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 F + H + R + ++ ++ + Sbjct: 191 RDLFERSVDALLVHDGEGNIVDCNAEACRSLGYTRQELLRMNVRDFATNLLRREDRTPGE 250 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E + E ++L ++ ++ Y R + + E + Sbjct: 251 PTLWERALSGEPGVVAGVHLGEHRRRDGTTFPVEVRVGPVVYGGRRMILAAARDITERKR 310 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + E + + F AN S + T + G++ LL L+ Sbjct: 311 IEEELREAKEQAEAASRAKSEFVANMSHEIRTP------MNGVIGMAELLLDTPLTPEQR 364 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + S +A + L++ IPFE + E + Sbjct: 365 EYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLA 416 >gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 599 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 130/552 (23%), Positives = 230/552 (41%), Gaps = 16/552 (2%) Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 E++LP D + + + + L + E E Sbjct: 48 ETTLPFSVDGNEKEMTLLVSTELLSIEEEEPHVLVSILDITERKDMEKELKISEKRFREI 107 Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + PIP +Y G+L AN S L L V +++ L D P L + + + Sbjct: 108 YSESPIPIEIYDSEGHLANANTSCLKLFGISDVAEVKDFN----LFDDPNLPADTRAQLL 163 Query: 385 MLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + T + S ++ A + + Sbjct: 164 AGQTVEYETVFDFELVKKLDLYKTNRSGSIHVNVKISALCTDCIDGYLVHVQDITKRKQA 223 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFL 501 + K+ +L L+ T GI + + + +++ GY +++ + + Sbjct: 224 EEKVRQSEERLELALKGTRAGIWDWDVQTGKTYFDERWAEIVGYNPDELKPDIQTWIDLT 283 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSL 556 L + + + E K + + + + + Sbjct: 284 HPKDYKRAEELLNKHFA-GETENYECQLRMKHKNGHWVWIEDRGRVVEWSRDGKPKRMTG 342 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI++ K +N + +K +AE+ + KS+FLA +SHE+RTPL +IIG+S+++ G Sbjct: 343 THIDITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSG 402 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L + + ++Y++ I SG +L+++N +LDISK+E+GKM E V+L E + + I LV+ Sbjct: 403 NL-DEKELKYSHNILNSGEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVK 461 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K I IR + I ++ D KQI N+LSNAI FTP G++ I + T + Sbjct: 462 PLAMKKSIDIRFINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLS-TDDGT 520 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ ++E PF Q+ +S EGTGLGL L K V+ + G+ ++ S Sbjct: 521 AQISVADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVES 580 Query: 797 TPAKGTLIEIIF 808 G+ Sbjct: 581 EVGAGSTFTFTL 592 >gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1123 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 115/777 (14%), Positives = 247/777 (31%), Gaps = 82/777 (10%) Query: 86 TWNIDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W G + S G + D + + + + Sbjct: 151 VWVSTPQGICFELAS--WIAYTGQSLAEAQNGGWIDAVHPDDRAYTGEVWSAAVANLSMY 208 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G Y + P+ + G A +RL ++ Sbjct: 209 QIEYRIRGKDGNYRYFWVW--GAPVIEEDGSVR--EWIGTCTDIHKRKLAEAENQRLQER 264 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ-----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + L + S + + + +V + D TE Sbjct: 265 YRSLVTATSQIVWAATPEGLGISNEMLTWMAYTGQSEAEVEVWGWLDPIHPDDCARSTEV 324 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + + + E++ + Sbjct: 325 WNAAMTNRGIYQTEYRLRGKDGTYRYFSVCGAPVLEEDGSIREWIGTCTDIHDRKLAEAE 384 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + ++ V + + N L + + PK + Sbjct: 385 NQRLLDMLNHSSDAIIVRDMSDKISHWNQGAERLYGWTREEVKGQCIQAFLKKTFPKPKE 444 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + + + + + + + I + Sbjct: 445 EIIAELLEQGNWEGEVQHLTHF--------GKLITVQSRWTLQRDISGQPCAVLEINTDI 496 Query: 438 VDTRINKRKMEIEVMQLCS---------------------ILEATSDGIAIINREGIILS 476 + + + +L + IL+ +DG+ + + G I Sbjct: 497 TARKQAEIALRQLNQELEARVVERTAALQNTLAEAQGLNAILDNLADGLLVADTAGQITH 556 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A ++G + + S + + S ++ L + Sbjct: 557 FNPAFLTMYGLTATALKGH-----YRELPISGLAELVARTQSHPEEVFSAEVALTKERIG 611 Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + ++ I K + +L + DI+ K+ K+DF++ V Sbjct: 612 QAVATAIFKKTVEQEPLACFGSALLIRDITAEKEI--------------DKMKTDFISTV 657 Query: 593 SHEIRTPLTAIIGFS----EVIKNQRFGPLGNP---------RYIEYANYIDRSGNLVLD 639 SHE+RTPLT+++GF+ E ++ F + R + N I + Sbjct: 658 SHELRTPLTSVLGFASIIKEKLETDVFPIISTEDRKLQKTIKRVADNLNIIVSEAERLTS 717 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+LDI+K+E+GK+ +P+ E + A + + + + +P+I+ Sbjct: 718 LINDVLDIAKMEAGKVEWQMQPLDPSELLDWATNSTAGLFETNGLQLVSEIEPGLPQIVG 777 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D + Q+ +N++SNA+ FT SG + + V + V DTG+G+ + K + Sbjct: 778 DRNRLLQVLINLISNAVKFTESG-CVTCRVKQGHDG-VCISVIDTGIGIAPEDQPKVFEK 835 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 F Q+ ++ + +GTGLGLP+ K ++D + G+ ++ S P KG++ I P Y S P Sbjct: 836 FRQVGDTLTDKPKGTGLGLPICKQIIDHHGGRIWVESEPGKGSVFSFIIPTY-ASDP 891 Score = 149 bits (375), Expect = 3e-33, Method: Composition-based stats. Identities = 70/538 (13%), Positives = 154/538 (28%), Gaps = 35/538 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLW 150 G L I+ +G + + + ++ + + + L+ + L Sbjct: 26 DGTLININPAYAAILGRTVPETLNLNYWQITPENYAIADQATLENLEQTGRYGPYEKELI 85 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGKRLDKKFSH 206 EG VP+ ++ L I ++ E + + R + K+ + ++ Sbjct: 86 HKEGHL--VPVRISGLMI-EKDGEQLIWSSVEDISDLRSFQQERQHTEQILKQSEARYRS 142 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK-YPLLT 263 L V + F S + + H DD T + + Sbjct: 143 LVTANTQIVWVSTPQGICFELASWIAYTGQSLAEAQNGGWIDAVHPDDRAYTGEVWSAAV 202 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + S + + N + + E++ + Sbjct: 203 ANLSMYQIEYRIRGKDGNYRYFWVWGAPVIEEDGSVREWIGTCTDIHKRKLAEAENQRLQ 262 Query: 324 ETVDKCPIP----FFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E + + L +N + +S ++E+ G L + Sbjct: 263 ERYRSLVTATSQIVWAATPEGLGISNEMLTWMAYTGQSEAEVEVWGWLDPIHPDDCARST 322 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 M R + ++ + + G + Sbjct: 323 EVWNAAMTNRG------IYQTEYRLRGKDGTYRYFSVCGAPVLEEDGSIREWIGTCTDIH 376 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D ++ E E +L +L +SD I + + I N+ +L+G+ E++ + Sbjct: 377 DRKLA----EAENQRLLDMLNHSSDAIIVRDMSDKISHWNQGAERLYGWTREEVKGQCIQ 432 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 FL++ P + E+L E T KL++++ S Sbjct: 433 AFLKKTFPKPKEEIIAELLEQGN---WEGEVQHLTHFGKLITVQSRWTLQRDISGQPCAV 489 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII-GFSEVIK 611 DI+ KQ + L + E ++ L E + L AI+ ++ + Sbjct: 490 LEINTDITARKQAEIALRQLNQELEARVVERTAALQNTLAEAQG-LNAILDNLADGLL 546 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + E G+ + +G +++ N A + + G V + L + +N L Sbjct: 11 QLFELCPVGLVLCRTDGTLININPAYAAILGRTVPETLNLNYWQITPENYAIADQATLEN 70 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSH 573 + EK + KE L+ +RI + + ++ DIS+ + + + H Sbjct: 71 LEQTGRYGPYEKELI--HKEGHLVPVRISGLMIEKDGEQLIWSSVEDISDLRSFQQERQH 128 Query: 574 AKKIAEKESS 583 ++I ++ + Sbjct: 129 TEQILKQSEA 138 >gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1767 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 126/781 (16%), Positives = 263/781 (33%), Gaps = 51/781 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + + G + + G A M+G+++ Sbjct: 501 FTDVTEQFSAATWSNAVLEAAPEAMLIVEQM---GSIVFTNTRCQILFGYDANSMLGLQV 557 Query: 119 CDVSDILHID--PNNHIGDLLKRQNTW---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + + L + ++ +G I L+ LP Sbjct: 558 ESLLPEAMRSNHARDRLQFLREGRDRPMANARHVRALKADGGEFVAEIALSILPA-DHEG 616 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + + + + +F L G + + Sbjct: 617 R---RQVAASIRDMTQKLAVEQKIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSDNI 673 Query: 234 LRMK---------NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + N+ + +D L + +++ + + + + Sbjct: 674 ADITGFAASQFIENRQRTFASLILEEDRELCHQHIDRALAQQETFEVEYRIRHRDGSIRW 733 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS--- 337 + + + + S + + P + Sbjct: 734 VHEKGKASYTEEGFPLWFDGSIDDITESKLAMVELEASRLQLTNITESIPCTVYQLRWVS 793 Query: 338 --HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + + + + D ++ ++ + D + V Sbjct: 794 PADHTFTFLSGAAFHMLGLHREDLLKDFNIIAERIF-----DEERPEVVRALAGKSEDKL 848 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R + + M N + NG + + + + ++ + Sbjct: 849 QWVREFRYRHPNGSIRWMEAGASGHYNDDGAII-WNGYVMDITERKAIEEELAVSEAHFK 907 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ + ++ GI ++ +G+IL N + G E + P L E Sbjct: 908 ALFDGSTIGIVNVDAKGVILDCNDQYCEDMGQTRESLCGVPIFDVLSLQDKETAKAQFRE 967 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571 + + + L + + + L S ++M D++E K ++L Sbjct: 968 LAEGKVDH-YRGERSFIRPNGEPLWMTVNVSALFDSQKQFESAVVSMVDMTELKLLSDEL 1026 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ + + Y I+ Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKIE 1082 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 R+ +L I+ND+LD SKIE+GK+++ P LD + + + A K++ + + A Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746 N+PR + D + Q+ +N+++NAI FT G ++++S + + VRD+G+ Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTERG-EVLLSLNLVEQQNDDVVLRFSVRDSGI 1201 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T + K K F Q S + GTGLGL + K +V+ G + S G+ Sbjct: 1202 GLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261 Query: 807 I 807 Sbjct: 1262 T 1262 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 53/517 (10%), Positives = 142/517 (27%), Gaps = 34/517 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142 F ++D G L ++SE + K +G +++ + + ++ N LK +N Sbjct: 405 FYCSLDPSGQLAQVSEGVTKVLGMSP-ELLKRKYQRLFTANPLNEKNWEYTDLALKGENV 463 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + L G + + + LP+ S E + Sbjct: 464 PSHQVELLDASGHPRMLDLFM--LPLVSDTGELMSVE--MLFTDVTEQFSAATWSNAVLE 519 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + E +F + + H D L+ + Sbjct: 520 AAPEAMLIVEQMGSIVFTNTRCQILFGYDANSMLGLQVESLLPEAMRSNHARDRLQFLRE 579 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYF 315 ++ + ++ + L + + + ++ Sbjct: 580 GRDRPMANARHV--RALKADGGEFVAEIALSILPADHEGRRQVAASIRDMTQKLAVEQKI 637 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E V P + G++ Y + + +T + + IE L Sbjct: 638 RDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSDNIADITGFAASQFIENRQRTFASLI- 696 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + + + R I+ + + + + +G Sbjct: 697 LEEDRELCHQHIDRALAQQETFEVEYR---IRHRDGSIRWVHEKGKASYTEEGFPLWFDG 753 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYP 488 + ++++ ++E +QL +I E+ + + + + A + G Sbjct: 754 SIDDITESKLAMVELEASRLQLTNITESIPCTVYQLRWVSPADHTFTFLSGAAFHMLGLH 813 Query: 489 VEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 ED+L+ + + L L+ + + + Sbjct: 814 REDLLKDFNIIAERIFDEERPEVVRALAGKSEDKLQWV--REFRYRHPNGSIRWMEAGAS 871 Query: 547 KLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580 + DI+E K + +L+ ++ + Sbjct: 872 GHYNDDGAIIWNGYVMDITERKAIEEELAVSEAHFKA 908 >gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium etli Kim 5] Length = 374 Score = 415 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 191/367 (52%), Positives = 259/367 (70%), Gaps = 3/367 (0%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K+++EV +L SILE +DG+ +I EG I S NR+ S LF Y ++ KPF + + Sbjct: 1 KLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHES 60 Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + YL + + L + +G + L + + +L S+ Y + DI++ Sbjct: 61 QKAVLDYLNGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYCAVIRDITQ 120 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 WK+ +++L +AK AE ++HK+DFLARVSHEIRTPL AIIGFS+++ +RFGP+G+PRY Sbjct: 121 WKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRY 180 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IEYAN I RSG VLDIVNDLLDISKIE+G+M+L F V L+EAVSEA++LVQ AN +R Sbjct: 181 IEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQR 240 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N V+LRVRD Sbjct: 241 VIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRD 300 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 TG+GMT EL+ AMKPF Q+ ++Q GTGLGLPL KAMVDAN F I S P +GT Sbjct: 301 TGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINSAPNEGT 360 Query: 803 LIEIIFP 809 L+EI FP Sbjct: 361 LVEITFP 367 >gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72] gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72] Length = 916 Score = 415 bits (1068), Expect = e-113, Method: Composition-based stats. Identities = 125/744 (16%), Positives = 275/744 (36%), Gaps = 44/744 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 DA G + + + + G +++G + S + I + TW+G+ Sbjct: 35 TDAAGRIIDANPLFCEISGYSRDELLGRNHRMLKSTRHGAEFYAGIWATIAGGRTWHGEI 94 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ +V + +P + + I + +++ Sbjct: 95 CNRRKDGSEYWVRSTI--VPFPGPDGRPEQY--ISIRTDITAVKQQQQALLISEERLRRG 150 Query: 208 HEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTEKYPL 261 G ++F + P + + ++ D Sbjct: 151 QAAANIGTWDWNMVTGELFWSERIAPLFGLPEDLRETRYAAFLSAIHPDDREHVLAAVRA 210 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----------S 310 E+ + + + ++ + L Sbjct: 211 TVDEDRPYEVEHRVVWPDGTVRWLLERGAVTRDAEGNAVHMLGVVQDIHERKIAELSLAE 270 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 E + V+ + + G + Y + + + Y + IE + Sbjct: 271 SEQRLRETQARFSFAVEGAGDGVWDWDVASGRMMY-SGHYEAMLGYAPGE-IEPSVKAWM 328 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 P + + + + RLH + + + Sbjct: 329 RSVHPADIASAQARMMDYLGGRLPTFSTEYRLH--CKDGGYKWVLCRGTVVEREPDGRAR 386 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 GI + +++ + ++ +++A+S + I + G +L NRA ++L GY Sbjct: 387 RLIGIHSDISESKAAEERL----ALFRRVIDASSQCVGIADGTGRLLYQNRAHARLLGYE 442 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++I P L + V+ + ++ + L K+ + + I + Sbjct: 443 DDEIAGMPVARLLPLDDGGVLAAQIFGMVQD--ARGLVGQLPMRRKDGTVFTSFSNIGFV 500 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + D +E +N+L+ AK AE+ + KSDFL+ +SHE+RTP+ A++ Sbjct: 501 KDARGQTQYIFNIFTDFTEELARRNELAEAKDTAERANQAKSDFLSSMSHELRTPMNAVL 560 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF+++++ + I ++G +L ++N++LD+++IE+G+++L EPV+L Sbjct: 561 GFAQLLE---CDDTLTADQRDNVAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVAL 617 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 EAV + L+Q A + I++ S + + + AD +KQ+ LN+LSNA+ + GG+ Sbjct: 618 REAVDDCRQLIQPLAAARAIVLEMSLPDEL-VVRADRTRLKQVLLNLLSNAVKYNREGGR 676 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ + L V DTG G+ + +PF ++ ++ EGTG+GL + + + Sbjct: 677 VSLAAQCRE-GRLRLSVSDTGAGIAPERMAALFEPFERL-GAEASAIEGTGIGLTITRRL 734 Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808 ++ G+ S +G+ I Sbjct: 735 MELMGGEIGAESRVGEGSTFWIEL 758 Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 30/271 (11%), Positives = 76/271 (28%), Gaps = 11/271 (4%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 +D+ I + G + ANP F ++ Y + + G + + Sbjct: 17 RSLARLAYVLDQHAIVSVTDAAGRIIDANPLFCEISGYSRDELL----GRNHRMLKSTRH 72 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + + + I + Sbjct: 73 GAEFYAGIWATIAGGRTWHGEICN---RRKDGSEYWVRSTIVPFPGPDGRPEQYISIRTD 129 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILR 494 + ++ + I +L A + G N L + ++ LFG P + + Sbjct: 130 ITAVKQQQQALLISEERLRRGQAAANIGTWDWNMVTGELFWSERIAPLFGLPEDLRETRY 189 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 F + + + + + D +E + + L R + + + Sbjct: 190 AAFLSAIHPDDREHVLAAVRATVDEDRPYEVEHRVVWPDGTVRWLLERGAVTRDAEGNAV 249 Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + DI E K + L+ +++ + + Sbjct: 250 HMLGVVQDIHERKIAELSLAESEQRLRETQA 280 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 7/140 (5%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + +L +L+ +++ + G I+ N ++ GY +++L + + + Sbjct: 17 RSLARLAYVLDQ-HAIVSVTDAAGRIIDANPLFCEISGYSRDELLGRNHRMLKSTRHGAE 75 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 + ++ +T K+ +R I P Y DI+ Sbjct: 76 FYAGIWATIAGG--RTWHGEICNRRKDGSEYWVRSTIVPFPGPDGRPEQYISIRTDITAV 133 Query: 565 KQEKNKLSHAKKIAEKESSH 584 KQ++ L +++ + + Sbjct: 134 KQQQQALLISEERLRRGQAA 153 >gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] Length = 1763 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 132/796 (16%), Positives = 269/796 (33%), Gaps = 54/796 (6%) Query: 44 PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103 P D Q + V+ + + V + P + D G L + Sbjct: 486 PLLDDEGQLISVEMLFNDVTEQFSAAAWSNAVLEAAPEAMLIV---DESGQLVFSNSRCQ 542 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW----YGKTTL-WPIEGTNLY 158 + G +M+ + + + + L GK G Sbjct: 543 ELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGRDKVMANGKPLHALKCGGEQFP 602 Query: 159 VPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 V I L+ LP SR R+ + + + + +F L G Sbjct: 603 VQIGLSLLPADSRGQRQVA-----ASIRDLTEQLAVERQIRESESRFRGLVSNIPGAVYR 657 Query: 218 EK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + +I P +++K S +D +E+ + Sbjct: 658 TRINGTWTMEYVSDNITELTGYPAWHFIESKKRSFGSLILDEDAERCDAIISGALAEQHA 717 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPE 324 + + + + + + N + S E Sbjct: 718 FEVEYRIRHRDGSLRWVHEKGKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLET 777 Query: 325 TVDKCPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + P + + + + + + + ++ ++ + + Sbjct: 778 ITESVPSTVYQLVWRSERDRRFTFLSSAAMATLGFHRNEVLDNFELVAERIVEEDRGEII 837 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + ++W + ++ + + NG + Sbjct: 838 QMLAGRHGMQWTKAFRYHFPSGELRW---------LEAGARGSKQQDALVWNGYLMDISG 888 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + ++ ++ + GI ++ GII N G + + RK Sbjct: 889 RKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLAD 948 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + ++ + + + + +L+ + +I L Sbjct: 949 LMHPEDRALATGLYQALAESEQGS-ISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVV 1007 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +++ +I+ K ++L AK+ A+ + KSDFLA +SHEIRTP+ AIIG S++ Sbjct: 1008 MSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1067 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + Y I+R+ +L I+ND+LD SKIE+GK+++ P LD + + + Sbjct: 1068 ----DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMF 1123 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTS 733 + A +K++ + S A +P + D + Q+ +N+++NAI FT G + IS Sbjct: 1124 SVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARD 1183 Query: 734 NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++V VRD+G+G+T + K K F Q S + GTGLGL + K +V+ G+ Sbjct: 1184 EDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGE 1243 Query: 792 FYIFSTPAKGTLIEII 807 + S G+ Sbjct: 1244 IGVDSQFGNGSTFYFT 1259 Score = 46.2 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 9/177 (5%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIAIINREGII 474 P + + E ++ R + ++ + ++++ SD + +G I Sbjct: 357 PEGVVREIATLSHKFNEMAEVLEER-EQALLDSRGNRFATLIDGMSDKSFYCSMTPDGNI 415 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + V K+ G E + RK +F ++ L + + G Sbjct: 416 DQVSAGVEKVLGISPEVLKRKYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVEMAG--A 473 Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + L L + ++ L + +D++E + + A + + Sbjct: 474 DGSLRRLDLFMQPLLDDEGQLISVEMLFNDVTEQFSAAAWSNAVLEAAPEAMLIVDE 530 >gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 128/757 (16%), Positives = 259/757 (34%), Gaps = 52/757 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGK 146 + G ++ +L + +G A +++ D++ + + + +G LL+ + +T+ + Sbjct: 166 VGPDGRWLRVNRKLCEIVGYGADELLARTFQDITHPDDLRTDLDQVGRLLRGEISTYTLE 225 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------RL 200 +G+ L++ + ++ + + E F +V + + R Sbjct: 226 KRYVRKDGSLLWIQLTVSL--VRRIDGEPDHF--ISVVENIQARKAAEEERRLFSEALRQ 281 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + + S V + R VS LT Sbjct: 282 ASQPLLMADAQFHISYVNPAFSQLLGYAPSDLAGR---HVSCLTPPDPAALQAQAEGIVE 338 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L T D + G +++ E +++ D+ Sbjct: 339 LKTLGR--FSGPLDRLACDGTVIPLAANIGPVRDARGEVVAWVASYLDLRPLREKDKLLR 396 Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-------IAGGLSTLLD- 371 + +++ P V + Y N + L + Y + + LL Sbjct: 397 MLALAIEQSPANVVVTDLESKIEYVNDALLHDSGYSRAELLGTSARSLLSPQTTPELLQG 456 Query: 372 --APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ------ 423 D ++ R + + +A + +Q R + + ++ Sbjct: 457 IGEALARDRRWRGQLINRRKEGSEYTTAAVVSALQDERGRVTHFVAVQQDITDRLHDAAE 516 Query: 424 -FPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAV 481 + E + E Q ++ +A + + + N A Sbjct: 517 LERYRCHLEVLVAERTRQLEEVNRSLSEQQQFVRNVADAVPALVGYFDPQLYCRFANAAY 576 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + +G ++++ + + L + + + + L Sbjct: 577 LEWWGLRPDEVVGLHARELIGDEMFRRNEPSMRAALRGESPRLQRALPHTDGSLRETLIA 636 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSH 594 + ++ + + + DI+E K + +++ + KS FLA +SH Sbjct: 637 YVPDRQDGQVRGFIVVVSDITEIKVAEQQMAALNAQLAARAIEAEGATRAKSAFLANMSH 696 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ AIIG + ++ L E ID + +L I+ND+LD+SKI++GK Sbjct: 697 EIRTPMNAIIGLTHLMARDTRDSL----QRERLGKIDSAAKHLLQIINDVLDLSKIDAGK 752 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + L +LDE +S A LV ANEK + + + D + Q +N+L+N Sbjct: 753 LVLEDTEFNLDEVLSRAFELVGESANEKGLELVLDTDRLPSHLRGDPTRLSQALINLLAN 812 Query: 715 AIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 A+ FT +G + + +V V+DTG G+ F Q S R Sbjct: 813 AVKFTHAG-WVRLRGELLAEDRQRVQVRFEVQDTGEGIEPERFGSLFNAFEQADASTTRR 871 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL L + +V G+ + S P G+ Sbjct: 872 HGGTGLGLALTQHLVTLMGGEMGVRSEPGVGSTFWFT 908 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 75/298 (25%), Gaps = 14/298 (4%) Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 P + + + + + + LQ + E L R + E E Sbjct: 92 PAQSLASGAASDVLQWGMLVASGLLTSALSHALQRTRRREAEQL--RQLAATRQSLTESE 149 Query: 320 NLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ++ + V G N + Y + + + D+ Sbjct: 150 RRFQAAFEQAAVGIALVGPDGRWLRVNRKLCEIVGYGADELLA------RTFQDITHPDD 203 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R R I+ + L + E + Sbjct: 204 LRTDLDQVGRLLRGEISTYTLEKRYVRKDGSLLWIQLTVSLVRRIDGEPDHFISVVENI- 262 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 ++ E E L S + + + + I N A S+L GY D+ + + Sbjct: 263 ---QARKAAEEERRLFSEALRQASQPLLMADAQFHISYVNPAFSQLLGYAPSDLAGRHVS 319 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 P+ + I+ L + ++ L I + + + Sbjct: 320 CLTPP-DPAALQAQAEGIVELKTLGRFSGPLDRLACDGTVIPLAANIGPVRDARGEVV 376 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 5/178 (2%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + A + + ++ + + + E + GIA++ Sbjct: 108 GMLVASGLLTSALSHALQRTRRREAEQLRQLAATRQSLTESERRFQAAFEQAAVGIALVG 167 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G L NR + ++ GY +++L + F + + +L T Sbjct: 168 PDGRWLRVNRKLCEIVGYGADELLARTFQDITHPDDLRTDLDQVGRLLR-GEISTYTLEK 226 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K+ LL +++ + + + + +I K + + + + S Sbjct: 227 RYVRKDGSLLWIQLTVSLVRRIDGEPDHFISVVENIQARKAAEEERRLFSEALRQASQ 284 >gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 114/519 (21%), Positives = 227/519 (43%), Gaps = 19/519 (3%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 P + E E + + + + S+G + + + + Sbjct: 4 TDPHILLKLTEAEQRFRDVTEAAGEYIWELDSNGLYTFVTKPIETILGVPAEQALGRTP- 62 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 D + + +R A H + + + + Sbjct: 63 ----FDFMPPEEAEWVGAWFTKLVERRE-PFRALEHCSLKSDGSIVWQRVSGVPILDGAG 117 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E G + ++ ++ +E +L IL+ T +G I+ E +LS N++ K+F Sbjct: 118 ELRGYRGAALDITQEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIF 177 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543 GY +++L + + + S + Y++ L+ +++ + + G K ++ L++ Sbjct: 178 GYRADEVLGRNVKMLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQL 237 Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + + ++ DI+E K+++ AK+ AE + KS+FLA +SHE+RTP+ Sbjct: 238 AVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMN 297 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG ++ P P+ +Y I S +L ++ND LD++++E+GKM + P Sbjct: 298 VIIGLGQLALKSE--PPPPPKLHDYLETITASATTLLVLINDTLDLARLETGKMAIDQIP 355 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 L + +++ L+ A EK + + + A +P +++ D + Q+ +N+ SNAI F+ Sbjct: 356 FDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSD 415 Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G ++ +S + + + VRDTG+G+ +LE +PF Q S + GTGL Sbjct: 416 KG-EVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGL 474 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GL +A +V GK + S P +G+ PL + Sbjct: 475 GLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQ 513 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 24/254 (9%), Positives = 71/254 (27%), Gaps = 12/254 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143 + W +D++G +++ + +G A + +G D + L++R+ + Sbjct: 29 YIWELDSNGLYTFVTKPIETILGVPAEQALGRTPFDFMPPEEAEWVGAWFTKLVERREPF 88 Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G+ V ++ +PI E G+RG + + R + +K Sbjct: 89 RALEHCSLKSDGSI--VWQRVSGVPILDGAGELRGYRGAAL--DITQEKLARQALEEREK 144 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS---LTEYYAHKDDVLKT 256 + + + + + + S R + + + + Sbjct: 145 RLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVKMLMPDPYHSGHDQY 204 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + + + E ++ + + Sbjct: 205 VSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGEERLFVGSIQDITERKRQE 264 Query: 317 EGENLTPETVDKCP 330 + E + Sbjct: 265 ALQRQAKEAAEAAN 278 >gi|254500165|ref|ZP_05112316.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11] gi|222436236|gb|EEE42915.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11] Length = 1417 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 177/565 (31%), Positives = 291/565 (51%), Gaps = 29/565 (5%) Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + S PE++ F I + + + + P L E + Sbjct: 857 DTTGLSRPERQAFRKIAEALGARLEGDLEGWDEPDADETDNREEDLPDLPPEVPEAGPID 916 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI- 381 P +D+ PI + ++ YAN + L + Y ++ ++ AGGL L +A Sbjct: 917 PSLLDRLPIGIAIAHDRDVLYANKALLSILGYGAISELTEAGGLEALFIDEAEDLPDADG 976 Query: 382 ------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + +D + A +H++ WN L ++ E+ N+ + Sbjct: 977 MVGELDETMKVRLADGGVRSVDAHMHSVPWNGSRGLMISI--TERFNKPAPAASEGAAPN 1034 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R ++ ++ +ILE +DG+ +++ G IL N + LF +++ Sbjct: 1035 FFKEVRSELDGARTQISEMETILETATDGVLVLDERGTILKVNGSAEALFSASRGEMIGS 1094 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553 PF FL + YL + + L + LG L+ L + + ++ Sbjct: 1095 PFIEFLAPESHRSAEDYLDGLARNGVASILNDGREVLGKVPTGGLIPLFMTMGRIGDKDD 1154 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + + DI++WK + +L+ AK+ AE SS KSDFLA++SHEIRTPL AIIGFSEV+ Sbjct: 1155 TKFCVVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMM 1214 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +RFGP+GN RY +Y I SG+ ++ ++NDLLD+SKIE+GK +L F VS ++ ++E Sbjct: 1215 EERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKQDLKFSAVSANDIINEC 1274 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++L+Q AN +R++IR S + +P I+AD RS++QI LN+LSN I + SGGQ+I+STT Sbjct: 1275 VALMQPQANRERVIIRASLPDAVPNIVADPRSLRQIVLNLLSNGIKYNKSGGQVILSTTL 1334 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-------IRGEGTGLGLPLAKAM 784 N EV +RVRDTG GM +L A++PF Q+ +++ + KA+ Sbjct: 1335 EPNGEVSIRVRDTGSGMNPKQLAAALEPFRQVHTARRGGGTGLGLPLT---------KAL 1385 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 +AN +F+I STP +GTL+EI FP Sbjct: 1386 AEANRAQFHIDSTPDQGTLVEITFP 1410 Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats. Identities = 87/487 (17%), Positives = 162/487 (33%), Gaps = 54/487 (11%) Query: 6 IISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNT 65 ++ + L S + +D + + DN + E P ++ D + ++ Sbjct: 246 VLEEAAEALPSMAAADPEDKTAETQDNLEIATDAAAEGPDSEAEAVQPPADGDDQAQEPA 305 Query: 66 NYLD--------------------------------SENTFVFDPIPRTVRFTWNIDAHG 93 + D E FVF P R VRF W +D Sbjct: 306 DTADKAALIDSAPALGAPEDLDASSNAPENGPAADEEEPEFVFQPGRRPVRFAWKMDISQ 365 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 +S+E +G + ++G+ +V++ +DP I L R++TW GKT WP+ Sbjct: 366 RFTFLSDEFANVVGPASADIVGLTWAEVANRFDLDPRGSIARALDRRDTWSGKTVDWPVT 425 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 L VP+D+AALP + RNR F G+RGFG+ P A L + E Sbjct: 426 DAALRVPVDMAALPAFDRNRTFEGYRGFGVCRAADAK--PGARIAALSPAMAAFDEHLDD 483 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ S ++ + + + ++ ++ + + P + + E P+Q Sbjct: 484 GQSEADEEDAHASNET-----EPVDDHHEVVDKHSVEESEVSEIEAPPVPAAEDLKPKQP 538 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 D + + + S+ S + P A +E + + D+ Sbjct: 539 D--ALAGKMAIGASAAALVGSLSRFSDGSAQTSSEPHTPAMAEEAVDQSASLSDEPLSDE 596 Query: 334 FVYSHGNLFYAN---------PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 N + L +V D+E S + N+ Sbjct: 597 QTTIDDTAEEPNSPLEAAMKMDAALQQGVSGNVLDLETPEIDSDIEKVADDDGTNSPSEA 656 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-EDVDTRIN 443 + S A L + + +++ PE +G P + + Sbjct: 657 VKANSASAQEPEIADL---RKPEAAETIQHVVAGSVSDEAPEPAGISGPAPLDASEIETA 713 Query: 444 KRKMEIE 450 R ++ Sbjct: 714 VRSLQKS 720 >gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1149 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 134/743 (18%), Positives = 276/743 (37%), Gaps = 50/743 (6%) Query: 90 DAHGY---LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 D G ++ ++ G ++G +L V + + + Sbjct: 135 DDAGRDFVIRFANKATETFFGQPIESVVGRQLKTVFPYFDDLELDSYFEEAATGQPALFQ 194 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 ++ +G + +L+ SR+ ++ I R + + +L+K + Sbjct: 195 RSVTFRDG----IEAELSVSVFSSRDGDYV------IC--LRDVTEEVRVQSKLEKSANE 242 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + V S + P++ K ++ + +D + E Sbjct: 243 LDRLSAQVPGVYFHLSMNESGEPSFPYISEKVKELLGVEAAEVMEDASAAMGAVCIEDME 302 Query: 266 E------------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + L + + + + + S + ++ Sbjct: 303 RVYESLAVSSQNLTPLYIEYRVNMPSGRKKWV-ATKAIPEKRSGLRVVWYGIFEDITMRK 361 Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 +E + V+ V G+ Y N SF + Y+++D + GG+ L Sbjct: 362 ESEERLRMVSAAVEASSDFVLMVNRDGDALYRNNSFTNIVGYQTIDLLNEKGGVKALFGE 421 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + D + + + L + F ++ Sbjct: 422 KLVYDKILQETLEYGHWQGDV--------QVMTESGRQLDIYFRSVSVKDEKGRVSALVV 473 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-D 491 + + + ++ L + EA +DGI ++N GI+ + NR K++G Sbjct: 474 TGTDVTHNKRRQNLLKRYNSVLKAQSEAATDGILVVNERGIVSNFNRRFCKIWGLSTNLM 533 Query: 492 ILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KL 548 + +P + + + + + +T + ++ + I L Sbjct: 534 DVGRPEKIWNVASKQVADSEAFFERAMKISEDETETFKDVLDFEDGRTFERTSIPISSPL 593 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 S H+++E K+ + +L + AE+ + KS FLA +SHEIRTP+ IIG + Sbjct: 594 GESYGRVWFFHEVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTG 653 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ +Y + I S +L ++ND+LD SKIESGK+ + L + + Sbjct: 654 LLSETTLEN----EQHDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCM 709 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-I 726 EAI + + A EK + + F +P +L D ++Q+ +N++ NA+ FT GG + Sbjct: 710 EEAIDTLAIQATEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVR 769 Query: 727 ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + H +++VI +V DTG+G+ +++ F Q+ S + GTGLGL ++K + Sbjct: 770 VDPFHIKDDDVILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNL 829 Query: 785 VDANMGKFYIFSTPAKGTLIEII 807 V+ G ++ S +G+ Sbjct: 830 VELMGGSMWVESEDGEGSTFHFT 852 >gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1792 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 124/756 (16%), Positives = 267/756 (35%), Gaps = 50/756 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143 +D G + + + G M+G+++ ++ + ++ + + R Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G I L+ LP + R+ + + + ++ Sbjct: 591 ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253 +F L G + F + + +S +D Sbjct: 646 RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 +++ + + + + + + + + S Sbjct: 706 TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765 Query: 314 YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ + P + + + + + + D + Sbjct: 766 LALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 ++ + + D ++ + DR R + + M + Sbjct: 826 IIAERIFDEERPD--VVRALSGKSEDRLQW---IREFRYRHPNGSICWMEAGASGHLGEE 880 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + NG + + ++++ + ++ + + GI ++ +G+IL N Sbjct: 881 G-ALTWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + L + + E++ + L + + Sbjct: 940 MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + L + ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ Sbjct: 999 VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG S++ + + Y I+R+ +L I+ND+LD SKIE+GK+++ Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P LD + + + A K+I + + A N+PR +L D + Q+ +N+++NAI FT Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++++S + ++ + VRD+G+G+T + K K F Q S + GTG Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + K +V+ GK + S G+ L+ Sbjct: 1234 LGLAICKQLVELMGGKIGVESQLGHGSTFYFTVKLH 1269 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 F ++D G L ++SE + K +G ++ + + ++ N LK QN Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + + +G + + + P+ S E + Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTNELMSVE--MLFTDVTEQFSAAVWSNAVLE 522 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H + + Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582 Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S ++ + N + + + ++ + Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642 Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V P + G++ Y + + +T Y + IE + Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L ++ + + R+ + I+ + + + + +G Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490 + ++++ ++E Q+ +I E+ + + + + A K+ G + Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRD 818 Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 D++ + + L+ L+ + + + Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGKSEDRLQWI--REFRYRHPNGSICWMEAGASGH 876 Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588 + DI++ K + +L+ ++ + + F Sbjct: 877 LGEEGALTWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936 Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A ++ H +R TAI + +++ P+ ++ E Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 40/352 (11%), Positives = 97/352 (27%), Gaps = 23/352 (6%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + + + +L+ L E F Q + + Sbjct: 309 DVASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351 +F ++ A D N +D F + G L + + Sbjct: 369 TLSNTFNQMAELLADREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D ++ L A L++ N + + + + ++ + Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E M + + + ++LEA + + I++ Sbjct: 482 RLDVFMQPLMSDTNELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529 G I+ TN +LFGY +L L Q L +++ + Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANARHV 594 Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +L I+ + ++ D+++ + K+ +++ Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646 >gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 1261 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 123/776 (15%), Positives = 242/776 (31%), Gaps = 70/776 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + +D I++ + G A + IG L ++ D + +L+ Sbjct: 363 LFMLDTDLRYVRINQAMADLNGLSAERHIGRTLRELLTAGLADAVEPLLRQVLETGRPEL 422 Query: 145 GKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + P G + + + P+ + + +G G +V + Sbjct: 423 NREVHGATLPRSGEQRHWLV--SYHPVQAGDGTITGVHG--VVQEITERKQAEDALRESQ 478 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----------- 250 + GH +V E I ++N+ + + Sbjct: 479 RFLHSTLNALSGHIAVLDEFGTILEINEAWSRFALENQTAGVNASVGVGVNYLQHCEHCE 538 Query: 251 -------DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFE 301 D E + + + E E Q Q + Sbjct: 539 HKSFQCGDTSAYAEAIKDVIAGRRTRFEMEYACHSPTQQRWFVMRVTRFQSPGPVRIVIV 598 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHG------NLFYANPSFLLL 351 + + E + F ++ NP+F Sbjct: 599 HDDCTERKLAENASRDTEERYRNLFNSMDEGFCLIEMIFDGQQKPVDYRFLEVNPAFETQ 658 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 T I G P L + + + + +L Sbjct: 659 TG------IRNVTGKRVREIMPDL-EAYWFEIYGKVALTGESLRFINEV--------KAL 703 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + PEN I + + + + I + Sbjct: 704 DQWWDVHATRLGGPENRQVAIIFDNVTQRMKADEALRQSEARFRLLFDRGPVAIYSCDTS 763 Query: 472 GIILSTNRAVSKLFGYPV------EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 G+I N KL+G E L+ + + + +L ++ Q Sbjct: 764 GMIKEFNPCAVKLWGREPTPDDIDERFCGSSRVYCLDGTLLTPEQNPVIAVLKGEMLQAH 823 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581 + L + + + I L S +DI+E + + K + + Sbjct: 824 DVEALIERPDGSRIHVIANIVPLRNSWGEITGAINCFYDITERSRLEQKTQEQAQALAEL 883 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 K +FLA +SHE+R PL + ++++ Q+ + + I+R + +V Sbjct: 884 HQRKDEFLAMLSHELRNPLAPLASAVQLLQRQKNEAP----QQQALSIIERQTGQLKHLV 939 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +DL++IS+I SG + L E VSL + V A+ + ++R + S + AD Sbjct: 940 DDLMEISRITSGSVRLRQERVSLGDVVERALETTRPLMLQRRHELAVSLPPEPLWLHADA 999 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMK 758 ++Q+ +N+L+NA +T GG+I +S ++RVRDTG+G+ L + Sbjct: 1000 TRLEQVLVNLLTNAAKYTDKGGRIWLSAGQEEAAGTGAAVVRVRDTGIGIAPELLPRIFD 1059 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F Q S G G+GL L + +++ + G + S +G+ + P+ Sbjct: 1060 LFTQAERSIDRSQGGLGIGLCLVRRLLELHGGTVDVRSVLGQGSEFVVRLPVMPAD 1115 Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 35/352 (9%), Positives = 88/352 (25%), Gaps = 29/352 (8%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 E + L+ Sbjct: 160 AVAHDARRQFDTEDLRQLASLGRFASAAYQATMLLDTALEQGQVAQGLMDEAVQARLAMG 219 Query: 314 YFDEGENLTPETVDKCPIPFFV-------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 E E + F + AN +F T + V Sbjct: 220 KLRESEEHYRMCFESIEEGFCIIEKLEGETLDFRYVEANAAFAAQTSLRDV-------VG 272 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 TL + I + + F + Sbjct: 273 KTLRQVLPDEFEERLAIYDTVTRTGQPIKIQ------RRFGSQGRVLELYAFRVEDDM-- 324 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + + + K+ + +L ++ G+ +++ + + N+A++ L G Sbjct: 325 HRRVAINFQDITERKSAEEKLARQAAELATLYATAPVGLFMLDTDLRYVRINQAMADLNG 384 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG----STKEEKLLSLR 542 E + + L + L ++L + L + G + E++ + Sbjct: 385 LSAERHIGRTLRELLTAGLADAVEPLLRQVLETGRPE-LNREVHGATLPRSGEQRHWLVS 443 Query: 543 IIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + +I+E KQ ++ L +++ + S +A + Sbjct: 444 YHPVQAGDGTITGVHGVVQEITERKQAEDALRESQRFLHSTLNALSGHIAVL 495 >gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1104 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 103/530 (19%), Positives = 204/530 (38%), Gaps = 24/530 (4%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTK 353 + ++ +D V + +ANP++ + Sbjct: 171 EAIREEIQDGLNQEREKLKEANDTLQYLKTAIDHSVDGIAVAGSDKRIKFANPAWASMHG 230 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + G + + + +N + S + + ++ + Sbjct: 231 LTQKEV---EGAHARIFHSTAQYENEVAPFLKRVASKGSNY---GEMGHVRKDG-TEFPC 283 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + + + + + + + + ++LEAT D + + +++ Sbjct: 284 WMSISLIRGEGEDPTGVVAVAKDISERKAAEAALIASEERNRALLEATPDAVTVYDKDAK 343 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ++ N A +LFG+ E++L KP F+ + + + +++ + T Sbjct: 344 VIYVNPAFEQLFGWTAEEVLGKPLD-FVPSEERPKTDELIARMRKG---ESVLEEIKRYT 399 Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ +LL +R + DI++ K+ + L AKK AE + KS F+ Sbjct: 400 KDGRLLYIRASASMFWDKDRHFLGTVVISRDITDRKKAEEALRKAKKDAETANIAKSQFV 459 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ +IG + ++ + + R E+A I S +L ++ND+LD SK Sbjct: 460 ANMSHEIRTPMNGVIGMTGLLLDTDL----DERQREFAETIQSSAANLLTVINDILDFSK 515 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 IE+ K+ L L + + L+ + A K + ++P +L D ++Q+ Sbjct: 516 IEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLI 575 Query: 709 LNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +NI +NAI FT G ++ + + DTG+G+ + PF Q+ Sbjct: 576 INICNNAIKFTREGEVVVRVVGEEIKEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDA 635 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 S GTGLGL + K +V G+ + S P +G P Sbjct: 636 STTREYGGTGLGLSICKRLVQLMNGEIGVSSRPGEGATFWFSLPFQRQRQ 685 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D + ++ + G A +++G L D + + +++ + + Sbjct: 339 DKDAKVIYVNPAFEQLFGWTAEEVLGKPL-DFVPSEERPKTDELIARMRKGESVLEEIKR 397 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + +G LY+ +A + ++R F G I ++ K + Sbjct: 398 YTKDGRLLYIR--ASASMFWDKDRHFLGT--VVISRDITDRKKAEEALRKAKKDAETANI 453 Query: 210 IKKGHSSVEKEKYDIF 225 K + + Sbjct: 454 AKSQFVANMSHEIRTP 469 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 26/248 (10%), Positives = 66/248 (26%), Gaps = 11/248 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYGK 146 + +K + G ++ G N + LKR + + YG+ Sbjct: 213 GSDKRIKFANPAWASMHGLTQKEVEGAHAR--IFHSTAQYENEVAPFLKRVASKGSNYGE 270 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +GT ++ I + +G + A +++ Sbjct: 271 MGHVRKDGTEFPCW--MSISLIRGEGEDPTGV--VAVAKDISERKAAEAALIASEERNRA 326 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L E +V + + L +V + ++ KT++ Sbjct: 327 LLEATPDAVTVYDKDAKVIYVNPAFEQLFGWTAEEVLGKPLDFVPSEERPKTDELIARMR 386 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + S+ E+ +T + + + + + + +E + Sbjct: 387 KGESVLEEIKRYTKDGRLLYIRASASMFWDKDRHFLGTVVISRDITDRKKAEEALRKAKK 446 Query: 325 TVDKCPIP 332 + I Sbjct: 447 DAETANIA 454 >gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 823 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 131/583 (22%), Positives = 238/583 (40%), Gaps = 48/583 (8%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E D + N + + + + L + E +D Sbjct: 91 EHNDSNGSNRSFEVHHRVAQLGTSRLCHLLSFRDISIIRQLEGAYKRSEARHQALLDSAV 150 Query: 331 IP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + + G + NP+ L + S + + + ++ L+ +P +++ L Sbjct: 151 DAIVIINTRGAIKAFNPAAERLFGFSSDEVLGLN--VNMLMPSPYQQEHDNYLKRYLETK 208 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 +R I + + + E G + ++ + + Sbjct: 209 ERRVIGIGREVIGKRKDG---TVFPMNLSISEVTDGEERLFVGTVRDITHSKRTEEALRD 265 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 ++ +IL D I I+ G+I S N A K+FGY +++ + + + Sbjct: 266 SEARVRAILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEH 325 Query: 510 NHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565 + YL + R+ + + +G ++ + + + ++ S ++ + DI+E K Sbjct: 326 DGYLQKYQQTGTRRVIGIGREAVGRRRDGSTFPMELSVSEVRQGSRRYFTGIVRDITERK 385 Query: 566 QEKNKLSHA----------------------------KKIAEKESSHKSDFLARVSHEIR 597 + + +L + +K AE + KSDFLA +SHEIR Sbjct: 386 RYEARLRESIEESSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIR 445 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+TAI+GF+E Q L P E + I R+G +L ++ND+LDISKIESG + Sbjct: 446 TPMTAILGFAE----QVSASLNRPEDCEALSIIRRNGEHLLKLINDILDISKIESGLFEI 501 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 L + + + + A +K+I + +FA N+P I D+ +KQ +N+LSNA+ Sbjct: 502 EKTTCDLRVLIHDLMQSIGPKAAQKKIGLTVNFATNVPVCIETDVLRLKQSLMNLLSNAV 561 Query: 717 HFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT GG + +S T + +++ DTG+G+ L+K PF Q S R Sbjct: 562 KFTEQGG-VDLSVRMTEEFTTAPRIQMQICDTGIGIAAEHLDKLFIPFSQADTSVSRRFG 620 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL ++K +++ G + S G+ I P SH Sbjct: 621 GTGLGLAISKRLIELMGGDLQVKSILGSGSSFTITLPTGKISH 663 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 25/370 (6%), Positives = 80/370 (21%), Gaps = 19/370 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 + + + + ++ G RLC++ + + + + Sbjct: 36 VIYANFAYEEMMSCQQAEITGKRLCEIHEGCWNRSALLSSLQNTCHGDRLEQIIVEHNDS 95 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 ++ F + KR + + L + Sbjct: 96 NGSNRSFEVHHRVAQLGTSRLCHLLSF---RDISIIRQLEGAYKRSEARHQALLDSAVDA 152 Query: 215 SSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES----- 267 + + I + L ++V L + L E+ Sbjct: 153 IVIINTRGAIKAFNPAAERLFGFSSDEVLGLNVNMLMPSPYQQEHDNYLKRYLETKERRV 212 Query: 268 -SLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + + + + E Sbjct: 213 IGIGREVIGKRKDGTVFPMNLSISEVTDGEERLFVGTVRDITHSKRTEEALRDSEARVRA 272 Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + G + N + + Y + I + L+ P +++ Sbjct: 273 ILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGEN--VRMLMPDPYRGEHDGYLQ 330 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 R I + + + GI + + + Sbjct: 331 KYQQTGTRRVIGIGREAVGRRRDGSTFPM---ELSVSEVRQGSRRYFTGIVRDITERKRY 387 Query: 444 KRKMEIEVMQ 453 + ++ + + Sbjct: 388 EARLRESIEE 397 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 66/248 (26%), Gaps = 19/248 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144 I+ G +K + + G + +++G+ + + + +N++ L+ + Sbjct: 156 INTRGAIKAFNPAAERLFGFSSDEVLGLNVNMLMPSPYQQEHDNYLKRYLETKERRVIGI 215 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +GT P++L+ + R F G V + + Sbjct: 216 GREVIGKRKDGT--VFPMNLSISEVTDGEERLFVG-----TVRDITHSKRTEEALRDSEA 268 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKT 256 + + E I S S H M + + ++ + Sbjct: 269 RVRAILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEHDGY 328 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + T + + + T + + + ++ Sbjct: 329 LQKYQQTGTRRVIGIGREAVGRRRDGSTFPMELSVSEVRQGSRRYFTGIVRDITERKRYE 388 Query: 317 EGENLTPE 324 + E Sbjct: 389 ARLRESIE 396 Score = 50.8 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 16/213 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144 ID G +K ++ K G +MIG + + + ++ ++ T Sbjct: 284 IDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEHDGYLQKYQQTGTRRVIGI 343 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DK 202 + +G+ P++L+ + +R + GIV A + ++ Sbjct: 344 GREAVGRRRDGSTF--PMELSVSEVRQGSRRYFT----GIVRDITERKRYEARLRESIEE 397 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 +K + ++ + + S R K+ + + Sbjct: 398 SSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIRTPMTAILGFAEQ 457 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 ++ +SL ED +++ + + + + Sbjct: 458 VS---ASLNRPEDCEALSIIRRNGEHLLKLIND 487 Score = 39.2 bits (90), Expect = 3.0, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 3/126 (2%) Query: 458 LEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTE 515 L+A ++ E ++ N A ++ +I K E S + L Sbjct: 19 LQAIGHATLLVGSNEWDVIYANFAYEEMMSCQQAEITGKRLCEIHEGCWNRSALLSSLQN 78 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHA 574 D + + S + + + +L S C+ L+ DIS +Q + + Sbjct: 79 TCHGDRLEQIIVEHNDSNGSNRSFEVHHRVAQLGTSRLCHLLSFRDISIIRQLEGAYKRS 138 Query: 575 KKIAEK 580 + + Sbjct: 139 EARHQA 144 >gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1784 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 123/756 (16%), Positives = 261/756 (34%), Gaps = 50/756 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144 +D G + + + G M+G+++ + + + + R+ Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLREGRDRSMAN 590 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G I L+ LP + R+ + + + ++ Sbjct: 591 ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253 +F L G + F + + +S +D Sbjct: 646 RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 +++ + + + + + + + + S Sbjct: 706 TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765 Query: 314 YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ + P + + + + + + D + Sbjct: 766 LALVQLEQSRQQMTNITESIPCTVYQLQWHSPIDRRFTFLSGAAMKMLGLHRDDLMSNFD 825 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 ++ + + D V R + + M + Sbjct: 826 IIAERIFDEERPD-----VVRALSGQSEDRLQWIREFRYRHPNGSIRWMEAGASGHLGEE 880 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + NG + + ++++ + ++ + + GI ++ +G+IL N Sbjct: 881 G-AITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + L + + E++ + L + + Sbjct: 940 MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + L + ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ Sbjct: 999 VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG S++ + + Y I+R+ +L I+ND+LD SKIE+GK+++ Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P LD + + + A K+I + + A N+PR +L D + Q+ +N+++NAI FT Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++++S + ++ + VRD+G+G+T + K K F Q S + GTG Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + K +V+ GK + S G+ L+ Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269 Score = 115 bits (287), Expect = 5e-23, Method: Composition-based stats. Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 F ++D G L ++SE + K +G ++ + + ++ N LK QN Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDFALKGQNV 466 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + + +G + + + P+ S E + Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTGELMSVE--MLFTDVTEQFSAAVWSNAVLE 522 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H + + Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLRE 582 Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S ++ + N + + + ++ + Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642 Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V P + G++ Y + + +T Y + IE + Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L ++ + + R+ + I+ + + + + +G Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490 + ++++ ++E Q+ +I E+ + + + + A K+ G + Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPIDRRFTFLSGAAMKMLGLHRD 818 Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 D++ + + L+ L+ + + + Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGQSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876 Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588 + DI++ K + +L+ ++ + + F Sbjct: 877 LGEEGAITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936 Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A ++ H +R TAI + +++ P+ ++ E Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973 Score = 74.3 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 41/352 (11%), Positives = 96/352 (27%), Gaps = 23/352 (6%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 M + + +L+ L E F Q + + Sbjct: 309 DMASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351 +F ++ A D N +D F + G L + + Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D ++ L A L++ N + + + ++ + Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDFALKGQ----NVPSHQVEMLDDQGHLR 481 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E M + + + ++LEA + + I++ Sbjct: 482 RLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529 G I+ TN +LFGY +L L Q L +++ + Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLREGRDRSMANARHV 594 Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +L I+ + ++ D+++ + K+ +++ Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646 >gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1786 Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats. Identities = 123/756 (16%), Positives = 263/756 (34%), Gaps = 50/756 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143 +D G + + + G M+G+++ ++ + ++ + + R Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMVN 590 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G I L+ LP + R+ + + + ++ Sbjct: 591 ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253 +F L G + F + + +S +D Sbjct: 646 RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 +++ + + + + + + + + S Sbjct: 706 TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765 Query: 314 YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ + P + + + + + + D + Sbjct: 766 LALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 ++ + + D V R + + M + Sbjct: 826 IIAERIFDEERPD-----VVRALSGQSEDRLQWIREFRYRHPNGSIRWMEAGASGHLGEE 880 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + NG + + ++++ + ++ + + GI ++ +G+IL N Sbjct: 881 G-GITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + L + + E++ + L + + Sbjct: 940 MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + L + ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ Sbjct: 999 VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG S++ + + Y I+R+ +L I+ND+LD SKIE+GK+++ Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P LD + + + A K+I + + A N+PR +L D + Q+ +N+++NAI FT Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++++S + ++ + VRD+G+G+T + K K F Q S + GTG Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + K +V+ GK + S G+ L+ Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 58/584 (9%), Positives = 162/584 (27%), Gaps = 58/584 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 F ++D G L ++SE + K +G ++ + + ++ N LK QN Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + + +G + + + P+ S E + Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTNELMSVE--MLFTDVTEQFSAAVWSNAVLE 522 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H + + Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582 Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S ++ + N + + + ++ + Sbjct: 583 GRDRSMVNARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642 Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V P + G++ Y + + +T Y + IE + Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L ++ + + R+ + I+ + + + + +G Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490 + ++++ ++E Q+ +I E+ + + + + A K+ G + Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRD 818 Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKK 547 D++ + + L+ L+ + + + Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGQSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876 Query: 548 LPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588 L + + DI++ K + +L+ ++ + + F Sbjct: 877 LGEEGGITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936 Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A ++ H +R TAI + +++ P+ ++ E Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 42/352 (11%), Positives = 98/352 (27%), Gaps = 23/352 (6%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 M + + +L+ L E F Q + + Sbjct: 309 DMASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351 +F ++ A D N +D F + G L + + Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D ++ L A L++ N + + + + ++ + Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E M + + + ++LEA + + I++ Sbjct: 482 RLDVFMQPLMSDTNELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLE-KIT 529 G I+ TN +LFGY +L L Q + T + R + + Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMVNARHV 594 Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +L I+ + ++ D+++ + K+ +++ Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646 >gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 761 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 142/624 (22%), Positives = 260/624 (41%), Gaps = 21/624 (3%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + ++ L + + + + + P + +T + Sbjct: 137 EALQESENRYKQLFNNSPAVTLLIDPVDYLIADANEPACAYYGYTYAEMTAKKITDISIY 196 Query: 255 KTEKYPLLTSE---ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF--EYLSHRNHP 309 E+ ++ + E + + Y T+ +E F Sbjct: 197 SRERNRKISQQVFSEKKGHFYSCHKLASGEIRHVEMYINTINIRGRELFFTNVYDVTASK 256 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E E + V+ + + G + N + + Y + +E Sbjct: 257 KIERELTESEEKFKQVVELSIDGIIIGANSGKIVDCNEAACRIFGYGKEEMLE------- 309 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMTFIPFEKANQFPE 426 L+ + + ++ + + ++ + + +I + + T + + + Sbjct: 310 -LNVDNILREDFMQSIPEIITTGKAVSENKTIESINKRKDG---TFFTAEIATRTFKLGD 365 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + +R ++ +++ T DGI I+N EG +++ N AV K+F Sbjct: 366 EDRLIVYVRDITERKKAERDLKSSEENFRALVNNTLDGIIILNFEGEVIAANAAVGKMFN 425 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +E I +L + V +L+ + S E + Sbjct: 426 VELEKITGTNIAKYLAPESVPVAIRDQINVLNNQGGYLSVYKAISSMGEHFWIEGLGTKI 485 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + DI+ K+ + L +AK AE + KS+FL +SHE++TPL +IIGF Sbjct: 486 IYQNQPANIVVIRDITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGF 545 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++K + GPL N + Y +I SG +L+I+ND+LD+SK ESG+ +L+ E S+DE Sbjct: 546 SDLLKEEIAGPL-NEKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDE 604 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 ++++ IS+V A EK I++ N I AD +QI N+LSNAI FTP+GG I Sbjct: 605 SINKVISVVLPQAQEKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSID 664 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ V + V+DTG+G+ EK KPF QI +S EGTGLGL L K V+ Sbjct: 665 VTLK-QEGLLVTIEVKDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVE 723 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 + G Y+ S +G+ P+ Sbjct: 724 MHGGNIYVESKIGEGSSFRFELPV 747 Score = 46.6 bits (109), Expect = 0.020, Method: Composition-based stats. Identities = 13/144 (9%), Positives = 38/144 (26%), Gaps = 13/144 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG----KTT 148 G + + +E + G +M+ + + ++ + I + ++ Sbjct: 287 GKIVDCNEAACRIFGYGKEEMLELNVDNILREDFMQSIPEI---ITTGKAVSENKTIESI 343 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT I + +R V K ++ F L Sbjct: 344 NKRKDGTFFTAEIATRTFKLGDEDRLIV------YVRDITERKKAERDLKSSEENFRALV 397 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP 232 + + ++ + + Sbjct: 398 NNTLDGIIILNFEGEVIAANAAVG 421 >gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 1010 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 145/787 (18%), Positives = 299/787 (37%), Gaps = 77/787 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + E ++ + G ++ M + D++ + P + K Sbjct: 100 GQIVEANKAATRFYGYSKEQLRSMCIQDINT---LSPEQVAAERQKAMRELRSHFIFPHR 156 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---GKRLDKKFSHLHE 209 +++ + PI R + F I++ N L + L + S + Sbjct: 157 RADGSQRTVEVHSSPIRFREQNVL----FSIIYDITERNQTEELVYAQRDLARITSSVTA 212 Query: 210 IKKGHSSVEKEKYDIFSQQS--------------------------------PPPHLRMK 237 + + + I S R++ Sbjct: 213 LDEALPLCLQIALRISGMDSGGFYFFDHSYTIIKLAYHTGLSENCAQAIAYYSVGSPRIQ 272 Query: 238 NKVSSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDF--------HTINLNQYTKKQ 287 + L YY D+ + ++ L + +P E F H++N + Sbjct: 273 DIPLDLPSYYTITDNPIYHISQIEGLRSFAIIPIPIHEGFLGYIFVASHSLNDITSFSRH 332 Query: 288 YFGTLQNNSKESFEYLSHRNH------------PSLSAYFDEGENLTPETVDKCPIPFF- 334 + + +L + +L ++ + + P+ + Sbjct: 333 ALEAIASEIGNVIIHLRTKESLEHNQHILHELNQTLEDRVEQRTMEVQDLYENAPVGYHS 392 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + + G L N + L Y D + +L + D I P+ + + Sbjct: 393 LDAEGLLIVLNQTQLNWLGYTREDLLGRPFI--EILSPRSIPDFEHIFPLF--KQQGSVR 448 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + + ++ + ++ + + + + + Sbjct: 449 DLEFEM---RKKNGTLMPVLISATAVYDECGNYLMSRSTVFDNTERKKAELALRETEERT 505 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNH 511 ++E++ D I + + +G ++ NRA ++ GY +L + + + T + Sbjct: 506 RLLIESSPDAIVLFSEQGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGLIMPDMTWDLALM 565 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 ++ T++ + E +++R+ L Y T+ D++ K + KL Sbjct: 566 VSHDLAEHHYFTTIDLQIQRANGEMLDVAMRVFGLTLQGQPHYLATLRDVTTEKHAEEKL 625 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A + K +FLA +SHE+RTPL AI+G SE + GPL N R ++ + I+ Sbjct: 626 RQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGVRGPL-NERQLDALHNIE 684 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD+SK+E+G+++L E VS+ E ++ V+ A +K + + Sbjct: 685 ASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFVKEQALKKSLRLSFHLD 744 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTN 750 + + + AD R +KQ+ +N+LSNA+ FTP G + + T E+++ V DTG+G+ Sbjct: 745 DQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEAEQIVFVVEDTGIGIAQ 804 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + +PF Q+ + + EGTGLGL L + + + + G + S KG+ I P Sbjct: 805 DDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMVESELGKGSRFSIQLPY 864 Query: 811 YDTSHPH 817 P+ Sbjct: 865 RQPEMPN 871 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 47/173 (27%), Gaps = 7/173 (4%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + P+ + Q + E + +I Sbjct: 37 FWEIGLVGLSLILAIGAGWLIGQYSPQARRRHERDAATKASEQQFQLMFEEHGAIMLLIE 96 Query: 470 R-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 G I+ N+A ++ +GY E + + V + L I Sbjct: 97 PLSGQIVEANKAATRFYGYSKEQLRSMCIQDINTLSPEQVAAERQKAMRELRS----HFI 152 Query: 529 TLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + + + + ++DI+E Q + + + +A Sbjct: 153 FPHRRADGSQRTVEVHSSPIRFREQNVLFSIIYDITERNQTEELVYAQRDLAR 205 Score = 62.0 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 62/248 (25%), Gaps = 12/248 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G L +++ +G ++G ++ I HI L K+Q + Sbjct: 393 LDAEGLLIVLNQTQLNWLGYTREDLLGRPFIEILSPRSIPDFEHIFPLFKQQGSVRDLEF 452 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L P+ ++A +Y + R V N + +++ L Sbjct: 453 EMRKKNGTLM-PVLISATAVYDECGNYLMSR--STVFDNTERKKAELALRETEERTRLLI 509 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYY----AHKDDVLKTEKYPL 261 E + E+ ++ + E+ L Sbjct: 510 ESSPDAIVLFSEQGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGLIMPDMTWDLALMVSHD 569 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L N + YL+ + + +E Sbjct: 570 LAEHHYFTTIDLQIQRANGEML--DVAMRVFGLTLQGQPHYLATLRDVTTEKHAEEKLRQ 627 Query: 322 TPETVDKC 329 + Sbjct: 628 ANVALAHA 635 Score = 37.7 bits (86), Expect = 8.1, Method: Composition-based stats. Identities = 12/138 (8%), Positives = 37/138 (26%), Gaps = 10/138 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGKTT 148 G + +++ + G + +M+G + + D + L + + Sbjct: 522 QGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGLIMPDMTWDLALMVSHDLAEHHYFTTIDL 581 Query: 149 LW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G L V + + L + + + + ++ + +H Sbjct: 582 QIQRANGEMLDVAMRVFGLTLQGQPHYL------ATLRDVTTEKHAEEKLRQANVALAHA 635 Query: 208 HEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 636 ARTKDEFLASMSHELRTP 653 >gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 113/519 (21%), Positives = 226/519 (43%), Gaps = 19/519 (3%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365 P + E E + + + + G + + + + Sbjct: 4 TDPHILLKLTEAEQRFRDVTEAAGEYIWELDNNGLYTFVSKPIEAILGVPVEQALGRTP- 62 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 D + + +R H + + + + Sbjct: 63 ----FDFMPPEEAEWVGAWFTKLVERRE-PFRGLEHCSLKSDGSIVWQRVSGVPILDGAG 117 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E G + ++ ++ +E +L IL+ T +G ++ E +LS N+A ++F Sbjct: 118 ELRGYRGAALDITQEKLARQALEEREKRLALILDNTVEGFITMDAERQVLSFNKAAERIF 177 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543 GY E++L + + + + S + Y+ L+ +++ + + G K ++ L++ Sbjct: 178 GYEAEEVLGQNLKMLMPEPFHSQHDQYVENYLTSGVKKIIGTGREVQGRRKTGEVFPLQL 237 Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + + ++ DI+E K+++ AK+ AE S KS+FLA +SHE+RTP+ Sbjct: 238 AVSETLVGEERLFVGSIQDITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRTPMN 297 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG ++ P P+ +Y I S +L ++ND LD++++E+GKM + P Sbjct: 298 VIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQVP 355 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 L + +++ L+ A EK + + + A +P +++ D + Q+ +N+ SNAI F+ Sbjct: 356 FDLSDILNKLEKLMGERAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSE 415 Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G ++ +S + + + VRDTG+G+ +LE +PF Q S + GTGL Sbjct: 416 KG-EVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGL 474 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GL +A +V+ GK + S P +G+ PL ++ Sbjct: 475 GLSIANRLVELMGGKLEVKSEPGQGSSFFFNCPLRRSAQ 513 Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 25/253 (9%), Positives = 72/253 (28%), Gaps = 12/253 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143 + W +D +G +S+ + +G + +G D + L++R+ + Sbjct: 29 YIWELDNNGLYTFVSKPIEAILGVPVEQALGRTPFDFMPPEEAEWVGAWFTKLVERREPF 88 Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G +G+ V ++ +PI E G+RG + + R + +K Sbjct: 89 RGLEHCSLKSDGSI--VWQRVSGVPILDGAGELRGYRGAAL--DITQEKLARQALEEREK 144 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKT 256 + + + + + + S + + + + + Sbjct: 145 RLALILDNTVEGFITMDAERQVLSFNKAAERIFGYEAEEVLGQNLKMLMPEPFHSQHDQY 204 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + L + + + + + E ++ + + Sbjct: 205 VENYLTSGVKKIIGTGREVQGRRKTGEVFPLQLAVSETLVGEERLFVGSIQDITERKRQE 264 Query: 317 EGENLTPETVDKC 329 + ET + Sbjct: 265 ALQRQAKETAEAA 277 >gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1784 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 123/756 (16%), Positives = 263/756 (34%), Gaps = 50/756 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143 +D G + + + G M+G+++ ++ + ++ + + R Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G I L+ LP + R+ + + + ++ Sbjct: 591 ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253 +F L G + F + + +S +D Sbjct: 646 RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 +++ + + + + + + + + S Sbjct: 706 TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765 Query: 314 YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ + P + + + + + + D + Sbjct: 766 LALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 ++ + + D V R + + M + Sbjct: 826 IIAERIFDEERPD-----VVRALSGQSEDRLQWIREFRYRHPNGSIRWMEAGASGHLGEE 880 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + NG + + ++++ + ++ + + GI ++ +G+IL N Sbjct: 881 G-AITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + L + + E++ + L + + Sbjct: 940 MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + L + ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ Sbjct: 999 VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG S++ + + Y I+R+ +L I+ND+LD SKIE+GK+++ Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P LD + + + A K+I + + A N+PR +L D + Q+ +N+++NAI FT Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++++S + ++ + VRD+G+G+T + K K F Q S + GTG Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + K +V+ GK + S G+ L+ Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 F ++D G L ++SE + K +G ++ + + ++ N LK QN Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + + +G + + + P+ S E + Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTGELMSVE--MLFTDVTEQFSAAVWSNAVLE 522 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H + + Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582 Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S ++ + N + + + ++ + Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642 Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V P + G++ Y + + +T Y + IE + Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L ++ + + R+ + I+ + + + + +G Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490 + ++++ ++E Q+ +I E+ + + + + A K+ G + Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRD 818 Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 D++ + + L+ L+ + + + Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGQSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876 Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588 + DI++ K + +L+ ++ + + F Sbjct: 877 LGEEGAITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936 Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A ++ H +R TAI + +++ P+ ++ E Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 40/352 (11%), Positives = 97/352 (27%), Gaps = 23/352 (6%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + + + +L+ L E F Q + + Sbjct: 309 DVASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351 +F ++ A D N +D F + G L + + Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D ++ L A L++ N + + + + ++ + Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E M + + + ++LEA + + I++ Sbjct: 482 RLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529 G I+ TN +LFGY +L L Q L +++ + Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANARHV 594 Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +L I+ + ++ D+++ + K+ +++ Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646 >gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 1442 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 130/728 (17%), Positives = 256/728 (35%), Gaps = 45/728 (6%) Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 A + +G L ++ + + + + T + + IE + +P+ Sbjct: 360 PAERHLGRSLQEILPPALAEQ--RLFYVQQALATQTQQRYEYSIEVQGEVRYEEARIVPL 417 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 S+ IV K ++ + E + S Sbjct: 418 NSQE-------VLAIVRDITEAKQAELALKAAEQVQRAILEAIPDLIFRLDSQGICLSFV 470 Query: 229 ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 P+ V + + + + + + I + Sbjct: 471 WGGEVVPYSSPDTYVGRSLQELLPPELAERRLFFVQQAIATQTRQRYDQSIEIQGETRHE 530 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFY 343 + L + E E + + + G + Sbjct: 531 EVRIVPLNPQEVVVIVRD-VTDRVRSQQAVQESEQKFRALFENAAVAILIRHAETGEILE 589 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 AN + + S++++ L L ++ + A Sbjct: 590 ANSQAISAYGFSSLEELRAFDASEQSPYRRALRGGEFSLQSYLEQARQQGSA----RFEW 645 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 W R++ + F + + + + ++E D Sbjct: 646 HWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITARKSAEAELEQ-------FFSVALD 698 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 + I + +G NRA GY ++++ +PF ++ + +++ Sbjct: 699 LLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLIEEKRLD 758 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + R + S + DI+ K + ++ AK+ AE S Sbjct: 759 HFVNRYRTQDGSYRFIEWRASL----AGSLFYAAGRDITVAKLAEEQMKAAKEAAEAASR 814 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ AI+G + ++ + +P+ ++ I G ++L+++ND Sbjct: 815 AKSEFLATISHEIRTPINAILGMTSLLLDTSL----DPQQQDWVQTIRYGGEVLLNLIND 870 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SKIES K+ L P SL + V E + L+ A K + + ++P ++ D Sbjct: 871 ILDFSKIESQKLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPN 930 Query: 703 SVKQIALNILSNAIHFTPSGGQI-IISTTHTS--NEEVILRVRDTGVGMTNYELEKAMKP 759 ++QI N+LSNAI FTP G + + + V ++VRDTG+G+ +L++ KP Sbjct: 931 RLRQILANLLSNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGIPPEKLDRLFKP 990 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-------D 812 F Q+ +S + GTGLGL +++ + G + S P +G+ PL Sbjct: 991 FSQVDSSISRQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIPLKRPDQELLP 1050 Query: 813 TSHPHDCI 820 T+ P C+ Sbjct: 1051 TAAPDPCL 1058 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 46/407 (11%), Positives = 103/407 (25%), Gaps = 18/407 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + AL LD + + + + + + ++ Sbjct: 67 TPSPEARFRAALEASLDAIYLLEAVRDPVTREIRDFVFVDVNAKGEELISLQRRQIIGQR 126 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYL 303 + E+ +P +E+F + + Sbjct: 127 LCELLPINRWGGFFEKYKRVVETGIPLEEEFPISGQPGLKASWIHHQVVPVGDGILITSR 186 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362 + E E+ + P F S G + + PS + + + Sbjct: 187 DISERVKMERALQESESRYRALYEAIPDLIFELSAEGVILHCKPS--PYVPTRHPPEFYV 244 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + ++ L + + + + + Sbjct: 245 GCRAQDVFTGSLKEQYPSLAEGALVSQTPQYLEYEVEIEPGIRCYRRACVVAHGRDKVY- 303 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + + + + +IL+A D I +NR+GI LS Sbjct: 304 ---------ILVRDITERKQAELALREMEATQRAILQAIPDLIVRLNRQGICLSFISGGD 354 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 P E L + L Y+ + L+ +Q E + ++ Sbjct: 355 VHLDCPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEV---QGEVRYEE 411 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 I L + DI+E KQ + L A+++ D + Sbjct: 412 ARIVPLNSQE-VLAIVRDITEAKQAELALKAAEQVQRAILEAIPDLI 457 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 34/311 (10%), Positives = 70/311 (22%), Gaps = 17/311 (5%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SH 338 + G+L + A + + ++ P Sbjct: 43 QPLSVFRGILGSLSRRFPFQPPRGTPSPEARFRAALEASLDAIY-LLEAVRDPVTREIRD 101 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 N L ++ + L + R T I Sbjct: 102 FVFVDVNAKGEELIS------LQRRQIIGQRLCELLPINRWGGFFEKYKRVVETGIPLEE 155 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + + + +R ++ + ++ Sbjct: 156 EFPISGQPGLKASWIHHQVVPVGDG------ILITSRDISERVKMERALQESESRYRALY 209 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 EA D I ++ EG+IL + +P E + + L Sbjct: 210 EAIPDLIFELSAEGVILHCKPSPYVPTRHPPEFYVGCRAQDVFTGSLKEQYPSLAEGALV 269 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 Q LE E + R + + DI+E KQ + L + Sbjct: 270 SQTPQYLEYEVEI---EPGIRCYRRACVVAHGRDKVYILVRDITERKQAELALREMEATQ 326 Query: 579 EKESSHKSDFL 589 D + Sbjct: 327 RAILQAIPDLI 337 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 15/156 (9%) Query: 451 VMQLCSILEATSDGIAIIN----------REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + LEA+ D I ++ R+ + + N +L I+ + Sbjct: 71 EARFRAALEASLDAIYLLEAVRDPVTREIRDFVFVDVNAKGEELISLQRRQIIGQRLCEL 130 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSCYSLTMH 559 L N ++ + E G + + +++ +T Sbjct: 131 LPINRWGGFFEKYKRVVETGIPLEEEFPISGQPGLKASWIHHQVVPV----GDGILITSR 186 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 DISE + + L ++ D + +S E Sbjct: 187 DISERVKMERALQESESRYRALYEAIPDLIFELSAE 222 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 24/234 (10%), Positives = 55/234 (23%), Gaps = 9/234 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA GY + ++ T+G ++ + + L + Sbjct: 704 DAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLIEEKRLDHFVNR 763 Query: 150 WPIEGTNLY---VPIDLAALPIYSRNREFSGFR------GFGIVHVNRVDNDPRALGKRL 200 + + + LA Y+ R+ + + + Sbjct: 764 YRTQDGSYRFIEWRASLAGSLFYAAGRDITVAKLAEEQMKAAKEAAEAASRAKSEFLATI 823 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + G +S+ + QQ +R +V ++++K Sbjct: 824 SHEIRTPINAILGMTSLLLDTSLDPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQKLE 883 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L S E+ + Q K + + N Sbjct: 884 LEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQILA 937 >gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 1266 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 134/744 (18%), Positives = 268/744 (36%), Gaps = 41/744 (5%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + E + +G + G+ + D + ++R ++ Sbjct: 34 GRVLEGNPAAAAHLGYTPEALRGLTIADFEAAETPAEIAAHIEKIQRAGRDDFESQHRRR 93 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +GT + V I ++ EF+G R + + + +++F + + Sbjct: 94 DGTLVDVQITVS-------QVEFAGHPRLLAVFRDITERKETIRALRTSEQRFLDVVDAA 146 Query: 212 KGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLTSEE 266 + Y + + Q P R ++ + + + ++T + Sbjct: 147 GEYIWEIDRDGTYQLVTAQIEPLLGRSTAEIIGRSPVDFMPSAEAERIQTMLSERAQTGA 206 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + + ++ + N + E + + + E E + Sbjct: 207 AWQGLEHESVRPDGTRVWQRVSGLPIFNEAGELIGFRGTGRDITAERQAQQNEKRLNERL 266 Query: 327 DKCPIP--FFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 V+ + + L L + + Sbjct: 267 RLATTAARIGVWELDRATDRLEWDAGSARIFGTDPAAFNHRLANLQATLWDENRTIAEGL 326 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 L+ ++ A + + + + ++ + GI + D Sbjct: 327 IERSLHSAE----PCEAEFRIRRKSDGAIRHIRSVSLSIPDEHGQVQRLVGINEDITDRV 382 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ + + + E G+A+ + G L N VS+ GY E + + Sbjct: 383 QAREQLAAQEARFRGLFELAPVGLAMTDFETGAFLDFNDQVSEAAGYTREAFAQLTYWDV 442 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSL-- 556 + +L + EK + + + + ++ + + Sbjct: 443 TPREYEPKEREHLEAMARTGYYGPYEKEFIHR--DGHRFPVLLNGFRMTDPQTGRVVVWS 500 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DISE K + L AK+ AE + KSDFLA +SHEIRTP+ A+IG +++ Sbjct: 501 VIQDISERKAVEQALHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLD 560 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P+ YA + + ++L I+ND+LD SKIE+ ++ L P L E + + +L Sbjct: 561 PV----QRNYAEKMHNASRMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFG 616 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK + + IP + D + Q+ N+LSNAI FT G Q+ +S T + Sbjct: 617 DQAGEKGLELFLRVEPTIPSSLEGDALRLSQVLSNLLSNAIKFTKHG-QVGLSITQLGQD 675 Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + +V DTG+G+T + + F Q S GTGLGL +++ +V G+ Sbjct: 676 PEGVRLHFQVEDTGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGE 735 Query: 792 FYIFSTPAKGTL--IEIIFPLYDT 813 + STP +GT E+ P+ T Sbjct: 736 LRLESTPGEGTRFAFELHLPIAGT 759 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 39/383 (10%), Positives = 100/383 (26%), Gaps = 26/383 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143 + W ID G + ++ ++ +G ++IG D + + + + W Sbjct: 149 YIWEIDRDGTYQLVTAQIEPLLGRSTAEIIGRSPVDFMPSAEAERIQTMLSERAQTGAAW 208 Query: 144 YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G +GT V ++ LPI++ E GFRG G + + KRL++ Sbjct: 209 QGLEHESVRPDGT--RVWQRVSGLPIFNEAGELIGFRGTG--RDITAERQAQQNEKRLNE 264 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLKT 256 + + D + + + ++++L ++ + Sbjct: 265 RLRLATTAARIGVWELDRATDRLEWDAGSARIFGTDPAAFNHRLANLQATLWDENRTIAE 324 Query: 257 EKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 S E E + + ++ + + + + Sbjct: 325 GLIERSLHSAEPCEAEFRIRRKSDGAIRHIRSVSLSIPDEHGQVQRLVGINEDITDRVQA 384 Query: 316 DE----GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E E + P+ + G N Y + Sbjct: 385 REQLAAQEARFRGLFELAPVGLAMTDFETGAFLDFNDQVSEAAGYTR-EAFAQLTYWD-- 441 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P+ + + + I + + F + + Sbjct: 442 -VTPREYEPKEREHLEAMARTGYYGPYEKEF--IHRDGHRFPVL-LNGFRMTDPQTGRVV 497 Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452 + + + + ++ + Sbjct: 498 VWSVIQDISERKAVEQALHQAKE 520 Score = 97.4 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 30/276 (10%), Positives = 75/276 (27%), Gaps = 17/276 (6%) Query: 315 FDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 D + D P G + NP+ Y + + +A Sbjct: 8 SDRRADEWRILFDHLPDATLLIAPDTGRVLEGNPAAAAHLGYTP-EALRGLTIAD--FEA 64 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + A + R+ R + R + + + + P Sbjct: 65 AETPAEIAAHIEKIQRAGRDDFESQHR----RRDGTLVDVQITVSQVEFAGHP---RLLA 117 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + R + + +++A + I I+R+G + L G +I Sbjct: 118 VFRDITERKETIRALRTSEQRFLDVVDAAGEYIWEIDRDGTYQLVTAQIEPLLGRSTAEI 177 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + F+ + L+E + + R+ + + Sbjct: 178 IGRSPVDFMPSAEAERIQTMLSERAQTGAAW-QGLEHESVRPDGTRVWQRVSGLPIFNEA 236 Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + T DI+ +Q + + ++ Sbjct: 237 GELIGFRGTGRDITAERQAQQNEKRLNERLRLATTA 272 >gi|302342593|ref|YP_003807122.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639206|gb|ADK84528.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1211 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 123/789 (15%), Positives = 261/789 (33%), Gaps = 63/789 (7%) Query: 56 DQNQESVSNTNYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 Q+ E+ + F + + + G I+ G A + + Sbjct: 308 AQDISESKKAEEALRESEYRFRYFVENANDIVYALSPEGSFTYITPNWFDYFGEPAEEAL 367 Query: 115 GMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRN 172 G + + +L+ +G+ + P+ Sbjct: 368 GKTFEPYVHPDDVGACRAFLTKVLETGQKQSSVEYRVQRRDGS--WRWHVSNGAPLRDAQ 425 Query: 173 REFSGFRGFGIVHVNRVDN-DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 G+ GI AL + + + G + ++F Sbjct: 426 GAIIGY--VGIARDVTESKNTAEALREAALRLQEAVRAANVGLWDWRLDTDEVFYSSEWK 483 Query: 232 PHLRMKNKVSSLT----EYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTK 285 + ++ E H +D+ T L + L + F + + Sbjct: 484 RQIGFEDHEIGNDFAEWESRVHPEDLAPTMALIQRTLDGRAAKLQLEFRFRHKDGSYRWI 543 Query: 286 KQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 L++ + + L A E E + P + + Sbjct: 544 MAQGSVLRDEAGRATRMLGSHIDITERKQAEAALRESERTLHTLMANLPGMAYRCRNDEH 603 Query: 342 ---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + + L LT Y+ + + G ++ + + R+ Sbjct: 604 WTMEFVSQGCLALTGYRPEELM---IGGRVSYAQVIRPEDREMVAQTVRRALGRREVFEL 660 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + G + + + + + +L +I+ Sbjct: 661 IYIIQTAQGGQK-WVWERGCGVFGDDGRLLAVEGFISDMDELKRTEAALRANERRLSAIV 719 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 EA D + + + +G N A ++FG+ E++L K F+ + + + ++ + Sbjct: 720 EAMPDPMVVYDGQGRATYLNPAFGQVFGWRPEELLGKAI-PFVPDDQKEAVVATIKDLFA 778 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574 T+ T TK+ +LL + I ++ + + + D++ K+ + +L A Sbjct: 779 HGGPVTM--ETKRLTKDGRLLDIVISAARVLDEAGRVTGMVVNLTDVTHTKRLEAQLRQA 836 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 +K+ ++H+ LTAI G +E+ ++ P I + Sbjct: 837 QKM-----EAIGTLAGGIAHDFNNILTAISGNAELALDRARQGAATPAE---LEKILGAA 888 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + ++ ++ S+ K+ H +P++L++ V++A+S+++ A K I + Sbjct: 889 DRARRLIKKIMFFSR----KVEFHPQPLNLNKVVTDAVSIIE-RAIPKMISVELRLEPTP 943 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILR 740 I D ++QI LN+ SNA +GG++II T + + + L Sbjct: 944 WTIKGDATQLEQIILNLASNAQDAMQNGGRLIIETANVCLDEKDAASHFHMAAGDYLRLT 1003 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVG+ + LE +PF G+GTG+GL V + G Y +S P + Sbjct: 1004 VSDTGVGIDKHILEHIFEPFYTTK----EIGKGTGMGLASVYGAVQNHGGHIYCYSEPGQ 1059 Query: 801 GTLIEIIFP 809 GT+ + P Sbjct: 1060 GTVFKCYLP 1068 Score = 164 bits (416), Expect = 4e-38, Method: Composition-based stats. Identities = 43/518 (8%), Positives = 133/518 (25%), Gaps = 31/518 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQ-NTWYGK 146 + G L +E+ +G ++IG+ +++ D +++ + Q + + Sbjct: 215 VGVDGRLVLANEQFAAMLGYDKDELIGLHFNEITHPDDRDIGKDYVASTVTGQAASARYE 274 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G ++ + L+ + + F + + +F + Sbjct: 275 KRYLRKDGAVVWARVSLSL--VRDAAGKPLHF--ISHAQDISESKKAEEALRESEYRFRY 330 Query: 207 LHEIKKGHSSVEKEKYDIFS---QQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYPL 261 E + + + E Y H DD + + Sbjct: 331 FVENANDIVYALSPEGSFTYITPNWFDYFGEPAEEALGKTFEPYVHPDDVGACRAFLTKV 390 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDE 317 L + + + + + L++ Y+ + + E Sbjct: 391 LETGQKQSSVEYRVQRRDGSWRWHVSNGAPLRDAQGAIIGYVGIARDVTESKNTAEALRE 450 Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E V + + + + + + ++ + I P+ Sbjct: 451 AALRLQEAVRAANVGLWDWRLDTDEVFYSSEWKRQIGFEDHE-IGNDFAEWESRVHPE-- 507 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D ++ D + + + ++ G + Sbjct: 508 DLAPTMALIQRTLDGRAAKLQLE-FRFRHKDGSYRWIMAQGSVLRDEAGRATRMLGSHID 566 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDIL- 493 + + + + L +++ + + ++ L GY E+++ Sbjct: 567 ITERKQAEAALRESERTLHTLMANLPGMAYRCRNDEHWTMEFVSQGCLALTGYRPEELMI 626 Query: 494 -RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPF 550 + + + ++ + L R+ E I + T + + Sbjct: 627 GGRVSYAQVIRPEDREMVAQTVRRAL--GRREVFELIYIIQTAQGGQKWVWERGCGVFGD 684 Query: 551 SSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHK 585 + D+ E K+ + L ++ Sbjct: 685 DGRLLAVEGFISDMDELKRTEAALRANERRLSAIVEAM 722 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 80/281 (28%), Gaps = 12/281 (4%) Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 EN + D I V G L AN F + Y + I + Sbjct: 188 IETEKRLAASENRFRLSFDNANIGMVIVGVDGRLVLANEQFAAMLGYDKDELIGL----- 242 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + D + K + +A ++ + + + + Sbjct: 243 HFNEITHPDDRDIGKDYVASTVTGQAASARYEKRYLRKDGA-VVWARVSLSLVRDAAGKP 301 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + +++ + + + +E +D + ++ EG FG Sbjct: 302 LHFISHAQDISESKKAEEALRESEYRFRYFVENANDIVYALSPEGSFTYITPNWFDYFGE 361 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 P E+ L K F ++ + +LT++L +Q+ ++ Sbjct: 362 PAEEALGKTFEPYVHPDDVGACRAFLTKVLETGQKQS-SVEYRVQRRDGSWRWHVSNGAP 420 Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L + Y D++E K L A ++ Sbjct: 421 LRDAQGAIIGYVGIARDVTESKNTAEALREAALRLQEAVRA 461 >gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas mendocina NK-01] Length = 1277 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 117/755 (15%), Positives = 250/755 (33%), Gaps = 65/755 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---- 145 D+ G + + + +G A +M+G+R V + G Sbjct: 557 DSTGTITLFNSGAERLLGYRAEEMVGLRTPAVIHLEEEVQARAAELSATAGRPVEGFEIF 616 Query: 146 ---------KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDN 191 +T W +G+ V + ++A ++ + +GF G I + + Sbjct: 617 VHNARGGEPETRQWTYRHKDGSLRQVNLTVSA--MFDECGQITGFLGIASDISELLQATR 674 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE----YY 247 + R ++L + + + S + + Sbjct: 675 ALQKSESRFRGLVANLPGVVYRCADDAQRSMRYVSDEIANLCGYSASDFIDNHVRSYSSI 734 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS--- 304 H DD+ T++ + S + ++ ++ Sbjct: 735 VHPDDLPSTQRASEAIKRQESFELTYRLRHAEGHNVWVREKGRAEYDSHGRLLWIDGFIW 794 Query: 305 -HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 ++ + + P V G N + Y + Sbjct: 795 DVSERQAIEEELRLSQQRFLNAFNTAPQGMALVGPDGRWLEVNAELCRMLGYSREEL--- 851 Query: 363 AGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + D+ +A + + + + L + Sbjct: 852 ---QARTYQEVTHPDDLDADQQNVANLLAGRISSYQMEKRYLDKQGRT-LWVLLSVSLVR 907 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + + + D +R + L ++L+ D I I+ +G I + N A Sbjct: 908 DGEGQPVHFVSQVQDFSDRVAAERAVREREHYLSTLLDNVVDAIVSIDEQGRIETFNHAA 967 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 K+FGY +++ T + L + G + + + Sbjct: 968 EKIFGYLQDEVAGHNITQLIPD---------LAGEVRQGCALDEFGEMDGVRQNGERFPM 1018 Query: 542 RIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + ++ + + DI+E K+ + K++F++ VSHE+RTP Sbjct: 1019 ELAMSQISHQGQRRFITVIRDITERKRIE--------------QMKNEFVSTVSHELRTP 1064 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LTAI G +I G + + + + ++NDLLD+ K+ +GKM Sbjct: 1065 LTAIAGSLGLINGGALGEVP-QTMRQMLAIAHSNSLRLSALINDLLDMEKLVAGKMQFDL 1123 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 + + + +A+ Q YA + ++ +R ++ + D + + Q+ N+LSNA F+ Sbjct: 1124 QARLMQPLLEQALLHNQPYAEQHQVELRLQVEDDAL-VNVDTQRLAQVMANLLSNAAKFS 1182 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 P GG +++ T E + + V D G G+ + F Q + + GTGLGL Sbjct: 1183 PPGGNVVVCLQ-TLGEALRVSVSDNGPGIPEAFKPRIFSKFSQADSGDTRQQGGTGLGLA 1241 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + K +++ G+ S+P +G P+ ++ Sbjct: 1242 ICKEIIERMGGQIGFDSSPGQGATFWFELPITGSA 1276 Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 39/355 (10%), Positives = 98/355 (27%), Gaps = 19/355 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGK 146 + G E++ EL + +G ++ +V+ +D + + +LL + +++ + Sbjct: 827 VGPDGRWLEVNAELCRMLGYSREELQARTYQEVTHPDDLDADQQNVANLLAGRISSYQME 886 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + + L+ + + F V + + S Sbjct: 887 KRYLDKQGRT--LWVLLSVSLVRDGEGQPVHF--VSQVQDFSDRVAAERAVREREHYLST 942 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L + E+ I + + L + A + + Sbjct: 943 LLDNVVDAIVSIDEQGRIETFNHAAEKI-----FGYLQDEVAGHNITQLIPDLAGEVRQG 997 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 +L E + + N Q + + +++ + ++ +N TV Sbjct: 998 CALDEFGEMDGVRQNGERFPMELAMSQISHQGQRRFITVIRDITERKRIEQMKNEFVSTV 1057 Query: 327 DK---CPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 P+ S G L + + + + ++ ++ LLD KL Sbjct: 1058 SHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAIAHSNSLRLSALINDLLDMEKLVAG 1117 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + A + L + N + + Q Sbjct: 1118 KMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQVEDDALVNVDTQRLAQVMA 1172 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 31/324 (9%), Positives = 78/324 (24%), Gaps = 29/324 (8%) Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK--CPIPFFVYSHGN 340 + ++ L + + L+ ++ D P+ G Sbjct: 359 RSTRRSTQRLMQRQQAALRALNEIAALPSLTRTEQLRQALRLGADHFRMPLGIISRIEGE 418 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASA 398 + + E+ +L + +R A + Sbjct: 419 QYQVLVQVSPEGTLRDGQQFELGDTYCSLALQQDEALAITHMADSTHRGHPCYGQFALES 478 Query: 399 RLHTIQWNREN--SLAMTFIPFEKANQFPENMPQNGIEPED-----VDTRINKRKMEIEV 451 + T+ + F E ++ + + + Sbjct: 479 YIGTVVRVGGKPFGTLAFANREPRKRPFDEADRDFLGLFARWVGAMLERQQQEHAVRSAR 538 Query: 452 MQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L ++L++ + I + G I N +L GY E+++ + Sbjct: 539 AYLQAVLDSATGVSIIASDSTGTITLFNSGAERLLGYRAEEMVGLRTPAVIHLEEEVQAR 598 Query: 511 HYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIKKLPFS----SC 553 + + E + K+ L + + + + + Sbjct: 599 AAELSATAGRPVEGFEIFVHNARGGEPETRQWTYRHKDGSLRQVNLTVSAMFDECGQITG 658 Query: 554 YSLTMHDISEWKQEKNKLSHAKKI 577 + DISE Q L ++ Sbjct: 659 FLGIASDISELLQATRALQKSESR 682 >gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] Length = 1771 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 126/781 (16%), Positives = 265/781 (33%), Gaps = 51/781 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G + + + G +A M+G+++ Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DEKGEIIFSNSRCQQLFGYHAEAMLGLQV 557 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + R +G I L+ LP Sbjct: 558 EALLPQALGSEHVRYRQQFLRDGRDRSMANARHVRAVKADGNEFIAEIALSILPA----- 612 Query: 174 EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 + G R + + + +F L G + + Sbjct: 613 DVDGSRQVAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDN 672 Query: 233 HLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + +S + +D L + +++ + + + + Sbjct: 673 IADITGYAASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIR 732 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-- 337 + N + + + S + + P + Sbjct: 733 WVHEKGKASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWR 792 Query: 338 ---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + + + L + + + + ++ + + + +SD Sbjct: 793 SPSDRAFTFLSGAALPMLGLQRDNLMNDFNIIAERIFDEERPEVVRALAG---KSDDKLQ 849 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R + + M + + + NG + + ++++ + Sbjct: 850 WI--REFRYRHPNGSIRWMEA-GASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHF 906 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ + + GI I+ +G+IL N + G E++ P L + Sbjct: 907 RALFDGATIGIINIDAKGLILDCNDQFCEDIGRAREELRNIPIFDVLSPQDREIAKAQFK 966 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570 ++ + + + + + + L ++M D++E K ++ Sbjct: 967 DLADGKVDH-YRGERSFIRPSGEPMWMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDE 1025 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ + + Y I Sbjct: 1026 LLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKI 1081 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +R+ +L I+ND+LD SKIE+GK+++ P LD + + + K++ + + Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAV 1141 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGV 746 A N+PR + D + Q+ +N+++NAI FT G I + + + VRD+G+ Sbjct: 1142 APNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGI 1201 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T+ + K K F Q S + GTGLGL + K +V+ G + S G+ Sbjct: 1202 GLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYF 1261 Query: 807 I 807 Sbjct: 1262 T 1262 >gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1] Length = 1771 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 126/781 (16%), Positives = 265/781 (33%), Gaps = 51/781 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G + + + G +A M+G+++ Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DEKGEIIFSNSRCQQLFGYHAEAMLGLQV 557 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + R +G I L+ LP Sbjct: 558 EALLPQALGSEHVRYRQQFLRDGRDRSMANARHVRAVKADGNEFIAEIALSILPA----- 612 Query: 174 EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 + G R + + + +F L G + + Sbjct: 613 DVDGSRQVAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDN 672 Query: 233 HLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + +S + +D L + +++ + + + + Sbjct: 673 IADITGYAASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIR 732 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-- 337 + N + + + S + + P + Sbjct: 733 WVHEKGKASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWR 792 Query: 338 ---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + + + L + + + + ++ + + + +SD Sbjct: 793 SPSDRAFTFLSGAALPMLGLQRDNLMNDFNIIAERIFDEERPEVVRALAG---KSDDKLQ 849 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R + + M + + + NG + + ++++ + Sbjct: 850 WI--REFRYRHPNGSIRWMEA-GASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHF 906 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ + + GI I+ +G+IL N + G E++ P L + Sbjct: 907 RALFDGATIGIINIDAKGLILDCNDQFCEDIGRAREELRNIPIFDVLSPQDREIAKAQFK 966 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570 ++ + + + + + + L ++M D++E K ++ Sbjct: 967 DLADGKVDH-YRGERSFIRPSGEPMWMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDE 1025 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ + + Y I Sbjct: 1026 LLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKI 1081 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +R+ +L I+ND+LD SKIE+GK+++ P LD + + + K++ + + Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAV 1141 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGV 746 A N+PR + D + Q+ +N+++NAI FT G I + + + VRD+G+ Sbjct: 1142 APNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGI 1201 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T+ + K K F Q S + GTGLGL + K +V+ G + S G+ Sbjct: 1202 GLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYF 1261 Query: 807 I 807 Sbjct: 1262 T 1262 >gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1034 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 142/662 (21%), Positives = 252/662 (38%), Gaps = 40/662 (6%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 I+ RE S GF + + + + + + Sbjct: 391 IHDLFREVSDDLGFALYKIEMEKKRDQ-----YEAHIRLMTRNMNDVIIEADVEGRYTYI 445 Query: 228 QSPPPHL--RMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + R K + H DD+ + + + + + Sbjct: 446 SPSHQRVLGRGKELLGKNCMKDLHPDDIDFVASIFKKIVETGEQQHAEYRYLHPDKGYIW 505 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFF---VYSH 338 + + + + ++ R+ +E + LT E F V Sbjct: 506 LGSVATSYVDENGQKRVLINTRDVTERKENEEEIKKLTEEYQTVFQGTQDSMFLIEVTDD 565 Query: 339 GNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 Y N + + T + S G L K D + S+ T Sbjct: 566 NEFRYMRNNRAHQVSTGFTSAYF---RGKTPQELAGKKTGDQLSANYKRCIDSNDTVSYE 622 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 P Q E G + + ++ + S Sbjct: 623 ETLEFP---AGTRMWQTALTPI---FQHGEVRYIVGSSQDITGRIKAENELRQSKQKYQS 676 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++E ++ + +++ + + + GY E+++ K F F+ + ++ Sbjct: 677 LVENLNEIVYTLDQNATVTYVTPNIENISGYKPEEVIGKNFVEFVHPDDIRGRMEQFRKV 736 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573 LS + TK + +R K + + DI++ K+ + +L Sbjct: 737 LSGIDEPS---EYRFLTKSGDTVWVRTNAKPIIKDDKIVGIQGLLMDITDVKKAEKQLED 793 Query: 574 AKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 A A + + KS FLA +SHE+RTPL ++IGFS+++ + G L N +Y Sbjct: 794 AVLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGEL-NDSQKKY 852 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + I G +LD++ND+LD+SKIE+GKM L E ++LD SE S++ A +K I + Sbjct: 853 ISNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKKSIDL 912 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 S +I I AD +KQI N+LSNAI FT G++ +S ++V + V+DTG+ Sbjct: 913 EISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVKDTGI 971 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L+K PF Q +S + GTGLGLPL K V+ + G+ + S KG++ + Sbjct: 972 GIPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGSVFTL 1031 Query: 807 IF 808 +F Sbjct: 1032 LF 1033 Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 33/387 (8%), Positives = 97/387 (25%), Gaps = 41/387 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGK 146 D G IS + +G +++G ID + +++ + + Sbjct: 435 EADVEGRYTYISPSHQRVLG-RGKELLGKNCMKDLHPDDIDFVASIFKKIVETGEQQHAE 493 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK---- 202 + Y+ + A N + R + K+L + Sbjct: 494 YRYLHPD--KGYIWLGSVATSYVDENGQ---KRVLINTRDVTERKENEEEIKKLTEEYQT 548 Query: 203 ----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + + + + S + +++ K Sbjct: 549 VFQGTQDSMFLIEVTDDNEFRYMRNNRAHQVSTGFTSAYFRGKTPQELAG------KKTG 602 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LSHRNHPS 310 + Y ++ +E + + Q+ Sbjct: 603 DQLSANYKRCIDSNDTVSYEETLEFPAGTRMWQTALTPIFQHGEVRYIVGSSQDITGRIK 662 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + + V+ + + + Y P+ ++ YK + I Sbjct: 663 AENELRQSKQKYQSLVENLNEIVYTLDQNATVTYVTPNIENISGYKPEEVIGKNFV---- 718 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + ++ + +R + I + + + + T + + + Sbjct: 719 ---EFVHPDDIRGRMEQFRKVLSGIDEPSEYRFLTKSGDTVWVRTNAKPIIKD--DKIVG 773 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456 G+ + D + ++++E V L + Sbjct: 774 IQGLLMDITDVKKAEKQLEDAV--LRA 798 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 5/127 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D + + ++ + G ++IG + I + Sbjct: 685 VYTLDQNATVTYVTPNIENISGYKPEEVIGKNFVEFVHPDDIRGRMEQFRKVLSGIDEPS 744 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G V + A PI ++ + G +G + + + + Sbjct: 745 EYRFLTKSGDT--VWVRTNAKPI-IKDDKIVGIQGLLM--DITDVKKAEKQLEDAVLRAN 799 Query: 206 HLHEIKK 212 + + Sbjct: 800 EMAIQAE 806 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 12/138 (8%) Query: 447 MEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLE 502 + + E +S+ I + N+A +++ GY E+ R P + Sbjct: 117 LSQNEAKFYEFAERSSEPIYRYDLIPRPGYTYVNKATTQMDGYTPEEHYRDPQLAIKIVH 176 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 + Y + K+ + + + K + S+ Sbjct: 177 PEDKQLFLDYFE----GKIPIDKRIQLRWVHKKGQTVWFEYVNKPVYDSNGNLIAVEGIG 232 Query: 559 HDISEWKQEKNKLSHAKK 576 DI++ K + + H K Sbjct: 233 RDITDMKIAQEREQHIKD 250 >gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200] Length = 1770 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 126/781 (16%), Positives = 265/781 (33%), Gaps = 51/781 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G + + + G +A M+G+++ Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DEKGEIIFSNSRCQQLFGYHAEAMLGLQV 557 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + R +G I L+ LP Sbjct: 558 EALLPQALGSEHVRYRQQFLRDGRDRSMANARHVRAVKADGNEFIAEIALSILPA----- 612 Query: 174 EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 + G R + + + +F L G + + Sbjct: 613 DVDGSRQVAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDN 672 Query: 233 HLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + +S + +D L + +++ + + + + Sbjct: 673 IADITGYAASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIR 732 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-- 337 + N + + + S + + P + Sbjct: 733 WVHEKGKASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWR 792 Query: 338 ---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + + + L + + + + ++ + + + +SD Sbjct: 793 SPSDRAFTFLSGAALPMLGLQRDNLMNDFNIIAERIFDDERPEVVRALAG---KSDDKLQ 849 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R + + M + + + NG + + ++++ + Sbjct: 850 WI--REFRYRHPNGSIRWMEA-GASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHF 906 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ + + GI I+ +G+IL N + G E++ P L + Sbjct: 907 RALFDGATIGIINIDAKGLILDCNDQFCEDIGRAREELRNIPIFDVLSPQDREIAKAQFK 966 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570 ++ + + + + + + L ++M D++E K ++ Sbjct: 967 DLADGKVDH-YRGERSFIRPSGEPMWMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDE 1025 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A+ S K DFLA +SHEIRTP+ AIIG S++ + + Y I Sbjct: 1026 LLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKI 1081 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +R+ +L I+ND+LD SKIE+GK+++ P LD + + + K++ + + Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAV 1141 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGV 746 A N+PR + D + Q+ +N+++NAI FT G I + + + VRD+G+ Sbjct: 1142 APNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGI 1201 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T+ + K K F Q S + GTGLGL + K +V+ G + S G+ Sbjct: 1202 GLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYF 1261 Query: 807 I 807 Sbjct: 1262 T 1262 >gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1782 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 124/756 (16%), Positives = 267/756 (35%), Gaps = 50/756 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143 +D G + + + G M+G+++ ++ + ++ + + R Sbjct: 531 VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G I L+ LP + R+ + + + ++ Sbjct: 591 ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253 +F L G + F + + +S +D Sbjct: 646 RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 +++ + + + + + + + + S Sbjct: 706 TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765 Query: 314 YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ + P + + + + + + D + Sbjct: 766 LALVQLEQSRQQMTNITESIPCTVYQLQWQSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 ++ + + D ++ + DR R + + M + Sbjct: 826 IIAERIFDEERPD--VVRALSGKSEDRLQW---IREFRYRHPNGSIRWMEAGASGHLGEE 880 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + NG + + ++++ + ++ + + GI ++ +G+IL N Sbjct: 881 G-AITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + L + + E++ + L + + Sbjct: 940 MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + L + ++M D++E K ++L AK+ A+ S K DFLA +SHEIRTP+ Sbjct: 999 VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG S++ + + Y I+R+ +L I+ND+LD SKIE+GK+++ Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSI 1114 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P LD + + + A K+I + + A N+PR +L D + Q+ +N+++NAI FT Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++++S + ++ + VRD+G+G+T + K K F Q S + GTG Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 LGL + K +V+ GK + S G+ L+ Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269 Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 F ++D G L ++SE + K +G ++ + + ++ N LK QN Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + + +G + + + P+ S E + Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTGELMSVE--MLFTDVTEQFSAAVWSNAVLE 522 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F ++ + H + + Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582 Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S ++ + N + + + ++ + Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642 Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V P + G++ Y + + +T Y + IE + Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L ++ + + R+ + I+ + + + + +G Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490 + ++++ ++E Q+ +I E+ + + + + A K+ G + Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWQSPTDRRFTFLSGAAMKMLGLHRD 818 Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 D++ + + L+ L+ + + + Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGKSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876 Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588 + DI++ K + +L+ ++ + + F Sbjct: 877 LGEEGAITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936 Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A ++ H +R TAI + +++ P+ ++ E Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 42/352 (11%), Positives = 97/352 (27%), Gaps = 23/352 (6%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 M + + +L+ L E F Q Q + Sbjct: 309 DMASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIIPQGAVSEIV 368 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351 +F ++ A D N +D F + G L + + Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D ++ L A L++ N + + + + ++ + Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E M + + + ++LEA + + I++ Sbjct: 482 RLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529 G I+ TN +LFGY +L L Q L +++ + Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANARHV 594 Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +L I+ + ++ D+++ + K+ +++ Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646 >gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY] Length = 1611 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 131/750 (17%), Positives = 269/750 (35%), Gaps = 37/750 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 DA G + ++ + + G ++ G + + + L ++W G+ Sbjct: 366 TDAEGVIAWVNPQYERNTGYTLGEVRGRKPSIAASEHTPAGTYRDMWSRLLAGHSWRGRF 425 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT + L+ P++ G++ + +R ++ S L Sbjct: 426 VNRRRDGTLYHEEATLS--PVFDAKGRRIAI--VGLLQDVTARIEAAQELERRERHLSEL 481 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPLLTSEE 266 E + + Q + + + S E A L + Sbjct: 482 LEQQTALFDNAPPIVLVCDGQIRQFNRALAELLRSSDEALAGTPVQELFGGEAGYGAFTA 541 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNN------------SKESFEYLSHRNHPSLSAY 314 ++P ++ ++ + + A Sbjct: 542 RTVPMLLAGGSVREQAVLRRPDGTSFTARMAGRGLKMEGVQIASLWVIEDVTEAQRAEAA 601 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDA- 372 E + I F Y+ +P L S+ + A Sbjct: 602 TREANARLELAQEAGHIGVFDYNLLTQRMVWSPQLEQLYGAASLPAQKDGHAAERPFQAW 661 Query: 373 ---PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D ++ ++ I ++ + ++ + Sbjct: 662 VDVIHPEDRARVQGLLAQAQAGQGGGRLRDSWRIVRADGSTRWILCTARVVRDEAGQAAR 721 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 G++ + D ++ + ++ ++ ++++A + + +G L NRA + F Sbjct: 722 IIGVQVDVHDQKMLEARVAEQLAFQQALIDAIPVPLFYKDAQGRYLGFNRAYVQAFDIHT 781 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIII 545 ED + K + +L Q++ + + + L Sbjct: 782 EDFIGKTVLDLEFLPMLERERLHADTEAALRGAQSVHREVAMPYADGLVHHTMFWLHGFN 841 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + T D+S+ ++ + +L AK++AE+ ++ KS FLA +SHEIRTPL AIIG Sbjct: 842 RPDGSAGGVIGTFVDVSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIG 901 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S + + R Y + ++G +L ++ND+LD SKIE+GK+ + P +LD Sbjct: 902 MSHLALKSGL----DARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALD 957 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + +V A K + + A ++P+ ++ D + QI +N +NA+ FT G + Sbjct: 958 RMLEGVADVVGFKAAAKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQG-E 1016 Query: 725 IIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I + NE + VRDTG+G+ ++++ + F Q S R GTGLGL + Sbjct: 1017 IHLLVRLERNEGARVWLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAI 1076 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +K++ + G+ + S G+ + PL Sbjct: 1077 SKSLAELMGGEVGVRSELGHGSAFWVTVPL 1106 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 39/354 (11%), Positives = 92/354 (25%), Gaps = 27/354 (7%) Query: 247 YAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 A D V + E+ + P + + + + Sbjct: 273 EALIDGVRYAVGRRAVDWEDPAGPWQLVLLDDMSAIMPMGLRWMVGGGAFALFALVGAMA 332 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360 + RN L A + ++ ++ PI + G + + NP + T Y + Sbjct: 333 LDALRNRRRL-AESMQRFSVLGAALENSPISIVITDAEGVIAWVNPQYERNTGYT----L 387 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 G + A + + + + + Sbjct: 388 GEVRGRKPSIAASEHTPAGTYRDMWSRLLAGHSWRGR---FVNRRRDGTLYHEEATLSPV 444 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGI 473 + + G+ + +++E L ++ + + + + G Sbjct: 445 FDAKGRRIAIVGLLQDVTARIEAAQELERRERHLSELLEQQTALFDNAPPIVLVCD--GQ 502 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 I NRA+++L E + P T + L E+ L Sbjct: 503 IRQFNRALAELLRSSDEALAGTPVQELFGGEAGYGAFTARTVPMLLAGGSVREQAVL-RR 561 Query: 534 KEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + R+ + L + D++E ++ + A E Sbjct: 562 PDGTSFTARMAGRGLKMEGVQIASLWVIEDVTEAQRAEAATREANARLELAQEA 615 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 49/492 (9%), Positives = 127/492 (25%), Gaps = 50/492 (10%) Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL--- 196 +++ W L+V + A + +V + ++ L Sbjct: 12 RDSLRDPQGRWLRG--ALWVLVLAAL-------GAWLAVEAVALVRSEQRQHERNQLLEG 62 Query: 197 ------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEY 246 G+ + + + K F PP L ++ + Y Sbjct: 63 MEQTLLGESSNGPLLGMVTLLGLSEPSLKAAAQGFLPYDAPPVLARLGVIRGRFMVDGAY 122 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 +D + + + L + F + G + + Sbjct: 123 VIARDGTVVAHDTAGNRTTGAQLGHRPYFQQALQGNASVYAALGGTSQERGLYYAAPLYE 182 Query: 307 NHPSLS-----AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---- 357 + S G + + + P + S + +++ L + Sbjct: 183 SDTPSSPIIGVVAVKVGFSHFDRLLTRAGHPVLLMSPQGVVFSSTRPEWLYAMTAPLTQE 242 Query: 358 --DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 D + + D +S D A R + + Sbjct: 243 RIDAVRSTRQFGSRFDNGLVSALPFSIDSREALIDGVRYAVGRRAVDWEDPAGPWQLVLL 302 Query: 416 IPFEKANQFPENMPQNGIEPED--------VDTRINKRKMEIEVMQ---LCSILEATSDG 464 G +D N+R++ + + L + LE + Sbjct: 303 DDMSAIMPMGLRWMVGGGAFALFALVGAMALDALRNRRRLAESMQRFSVLGAALENSPIS 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I I + EG+I N + GY + ++ + ++ ++TP+ + L + Sbjct: 363 IVITDAEGVIAWVNPQYERNTGYTLGEVRGRKPSIAASEHTPAGTYRDMWSRLLAG--HS 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + ++ L + + + + D++ + +L ++ + Sbjct: 421 WRGRFVNRRRDGTLYHEEATLSPVFDAKGRRIAIVGLLQDVTARIEAAQELERRERHLSE 480 Query: 581 ESSHKSDFLARV 592 ++ Sbjct: 481 LLEQQTALFDNA 492 Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats. Identities = 29/293 (9%), Positives = 65/293 (22%), Gaps = 21/293 (7%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107 + Q + + ++ + VFD T R W+ S LP Sbjct: 593 TEAQRAEAATREANARLELAQEAGHIGVFDYNLLTQRMVWSPQLEQLYGAAS--LPAQKD 650 Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI---EGTNLYVPIDLA 164 +A + DV + + W I +G+ ++ Sbjct: 651 GHAAERPFQAWVDVIHPEDRARVQGLLAQAQAGQGGGRLRDSWRIVRADGSTRWILCT-- 708 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 A + + R G+ A L + + + Sbjct: 709 ARVVRDEAGQ--AARIIGVQVDVHDQKMLEARVAEQLAFQQALIDAIPVPLFYKDAQGRY 766 Query: 225 FSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277 + V L + + L + L + S+ + Sbjct: 767 LGFNRAYVQAFDIHTEDFIGKTVLDLEFLPMLERERLHADTEAALRGAQ-SVHREVAMPY 825 Query: 278 INL----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + ++ + + L ET Sbjct: 826 ADGLVHHTMFWLHGFNRPDGSAGGVIGTFVDVSDRQRAEVELRRAKELAEETA 878 >gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] Length = 1209 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 118/739 (15%), Positives = 250/739 (33%), Gaps = 41/739 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G ++ ++E + G ++ G + + DP I L + + Sbjct: 223 TDRDGRIEWVNEGFTRISGYTLDEVRGRKPGEFLQGPETDPATVARIRQALDNGESVKAE 282 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKF 204 + +G + L P+Y R I + + + + + Sbjct: 283 IVNYTKQGRPY--WLALNISPVYDDQHNLI--RFIAIESDITQQKEMERMLRAALKESRD 338 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + S+ + I + +++ L Sbjct: 339 VMNALDESTILSIADPEGRILEVNERFCAITGYRADELIGKDHRMFKSGIHPPEFFADLW 398 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + + + + + + YL+ R + +E Sbjct: 399 QTIKAGRIWRNEICNRAKDGRLFWVDTTIVPFIGDDGKPERYLAVRFDITARKQSEEQLR 458 Query: 321 ----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + V G + N S + I + Sbjct: 459 ASETRYRSVITAMSEGIVVMNRAGEIETCNASAERILGLSRDQLIGRTSFDPRWQAIHED 518 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + S T A + + I+ ++ ++ Sbjct: 519 GSPFPGEEHPIMVSLTTGRALNDVIMGIRKPSGELTWLSINSQPLCDEQGNVYAAVASFH 578 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R+ ++++ + L EA+ DG+ +++ E L +NR +++ ++ Sbjct: 579 DITARRLAEQELRFQKTLLECQTEASPDGVLVVSPERRCLYSNRRFREMWNLSDREVDHV 638 Query: 496 PFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 T + P + + + E+ + +I L K+ + Sbjct: 639 MCTCMESLLAQVCDPERVRNEIEELYANPSLSGKAEIEL---KDGRTFERYSAPVISAEG 695 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 D++E + + K++F+A VSHE+RTPLT+I G + Sbjct: 696 EYYGRVWFFRDVTERRAIE--------------RMKNEFVAVVSHELRTPLTSIRGSLGL 741 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + G L PR + ++ ++ ++ND+LDI KIESGKM F+PV LDE V Sbjct: 742 LAGGVVGELP-PRAASMIDIALKNSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVR 800 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + I + + + + I + ++ D + Q+ N++SNAI F+P GG++ ++ Sbjct: 801 QTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAI 860 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V D G G+ ++ + F Q +S R GTGLGL +++A+V+ + Sbjct: 861 GREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHG 920 Query: 790 GKFYIFSTPAKGTLIEIIF 808 G+ + GT + Sbjct: 921 GQIGFVTASGVGTTFYVDL 939 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 8/153 (5%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 TR +R+ E ++ L + T + + I +R+G I N +++ GY ++++ + P Sbjct: 196 TRRARREAE-QLRMLSLVARHTDNAVIITDRDGRIEWVNEGFTRISGYTLDEVRGRKPGE 254 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554 T + + L ++++ + TK+ + L + I + + Sbjct: 255 FLQGPETDPATVARIRQALDNG--ESVKAEIVNYTKQGRPYWLALNISPVYDDQHNLIRF 312 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 DI++ K+ + L A K + + + Sbjct: 313 IAIESDITQQKEMERMLRAALKESRDVMNALDE 345 >gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1209 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 118/739 (15%), Positives = 250/739 (33%), Gaps = 41/739 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G ++ ++E + G ++ G + + DP I L + + Sbjct: 223 TDRDGRIEWVNEGFTRISGYTLDEVRGRKPGEFLQGPETDPATVARIRQALDNGESVKAE 282 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKF 204 + +G + L P+Y R I + + + + + Sbjct: 283 IVNYTKQGRPY--WLALNISPVYDDQHNLI--RFIAIESDITQQKEMERMLRAALKESRD 338 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + S+ + I + +++ L Sbjct: 339 VMNALDESTILSIADPEGRILEVNERFCAITGYRADELIGKDHRMFKSGIHPPEFFADLW 398 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + + + + + + YL+ R + +E Sbjct: 399 QTIKAGRIWRNEICNRAKDGRLFWVDTTIVPFIGDDGKPERYLAVRFDITARKQSEEQLR 458 Query: 321 ----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + V G + N S + I + Sbjct: 459 ASETRYRSVITAMSEGIVVMNRAGEIETCNASAERILGLSRDQLIGRTSFDPRWQAIHED 518 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + S T A + + I+ ++ ++ Sbjct: 519 GSPFPGEEHPIMVSLTTGRALNDVIMGIRKPSGELTWLSINSQPLCDEQGNVYAAVASFH 578 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R+ ++++ + L EA+ DG+ +++ E L +NR +++ ++ Sbjct: 579 DITARRLAEQELRFQKTLLECQTEASPDGVLVVSPERRCLYSNRRFREMWNLSDREVDHV 638 Query: 496 PFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 T + P + + + E+ + +I L K+ + Sbjct: 639 MCTCMESLLAQVCDPERVRNEIEELYANPSLSGKAEIEL---KDGRTFERYSAPVISAEG 695 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 D++E + + K++F+A VSHE+RTPLT+I G + Sbjct: 696 EYYGRVWFFRDVTERRAIE--------------RMKNEFVAVVSHELRTPLTSIRGSLGL 741 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + G L PR + ++ ++ ++ND+LDI KIESGKM F+PV LDE V Sbjct: 742 LAGGVVGELP-PRAASMIDIALKNSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVR 800 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + I + + + + I + ++ D + Q+ N++SNAI F+P GG++ ++ Sbjct: 801 QTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAI 860 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V D G G+ ++ + F Q +S R GTGLGL +++A+V+ + Sbjct: 861 GREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHG 920 Query: 790 GKFYIFSTPAKGTLIEIIF 808 G+ + GT + Sbjct: 921 GQIGFVTASGVGTTFYVDL 939 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 8/153 (5%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 TR +R+ E ++ L + T + + I +R+G I N +++ GY ++++ + P Sbjct: 196 TRRARREAE-QLRMLSLVARHTDNAVIITDRDGRIEWVNEGFTRISGYTLDEVRGRKPGE 254 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554 T + + L ++++ + TK+ + L + I + + Sbjct: 255 FLQGPETDPATVARIRQALDNG--ESVKAEIVNYTKQGRPYWLALNISPVYDDQHNLIRF 312 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 DI++ K+ + L A K + + + Sbjct: 313 IAIESDITQQKEMERMLRAALKESRDVMNALDE 345 >gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 1000 Score = 409 bits (1051), Expect = e-111, Method: Composition-based stats. Identities = 173/611 (28%), Positives = 290/611 (47%), Gaps = 26/611 (4%) Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + ++ + E + + L ++ Sbjct: 400 PETRPEPAAGDGEAGRRPEAAGHDETPAPAAEPAPEVP-RPLAPGQLSLNEHAAFREIAR 458 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 L + + + + GE +D Sbjct: 459 ILGARFAGDAPQDGPSPARDAEEAPRRAGAVTPFPALALARAPERGPSTAGE--VARVLD 516 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---------DAPKLSDN 378 + PI V+ + AN + L L Y+S + + AGG +L Sbjct: 517 RLPIGILVHQGEEVLLANRALLCLADYESAEALTAAGGAGSLFRGRDPASLAVGEGDPAG 576 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A PV+L + +A L ++W + + + + ++ Sbjct: 577 GADHPVVLATRTGEALPVAAVLTPVEWGGAPASLLALRRLPEEDPARHLRAA------EL 630 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ ++L+A +DG+ ++ G +++ N+ + LFG+ ++ + T Sbjct: 631 ERARQEARLRESE----AVLDAVTDGVVTLDERGRVIALNKGAAALFGHEPREVSGEDLT 686 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 V Q+ + L + + T + + E +L+L + +S+ + Sbjct: 687 VLFAQDGRPAIRAALERARAGEPASTE----VAAEGGEPILALTLAPLAQEEPRRFSVLL 742 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+S ++ + +L AK+ AE SS KSDFLA +SHEIRTPL AI+GF+EV+ ++FGP+ Sbjct: 743 RDVSAARRTEAELLRAKRAAEAASSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPI 802 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 GN RY +Y I SG V+ +V DLLD++KIE+G ++LHF V L++ V ++SL+Q Sbjct: 803 GNERYRDYLRDIRSSGEHVVSLVTDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLMQPQ 862 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A +R+++RTSFAN + +L D RS++Q ALN+++NAI FT +GGQ+I+ST T V Sbjct: 863 AARQRVVVRTSFANGLRPVLGDQRSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVA 922 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 LRVRDTG+GMT E+E A++PF Q+ +Q RG GTGLGLPL KA+V+AN G + S Sbjct: 923 LRVRDTGIGMTPDEVETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRVSSRK 982 Query: 799 AKGTLIEIIFP 809 +GTL+E++FP Sbjct: 983 HEGTLVEVLFP 993 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 70/512 (13%), Positives = 138/512 (26%), Gaps = 26/512 (5%) Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137 +RF W DA G + E +E L +G +G ++ ++ + L Sbjct: 149 TGAAPMRFLWRSDAEGRIVEATEALTGLVGRTP---LGRSWAELLADTVQGTSDDLAAAL 205 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV--DNDPRA 195 + T+ LW +GT V +DL+ P R F+GF GFG++ +RV RA Sbjct: 206 AARRTFRALPVLWRFDGTERGVAVDLSGAPRLGEGRAFAGFSGFGVIRPDRVAPMPPARA 265 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + + E+ + PPP + S A ++ Sbjct: 266 AAPAKPSLRERAAAVIAIGRASAPEEPGRAATWEPPPVPELPAFASLAGATLAGFAGMMA 325 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 ++E + + S E + + Sbjct: 326 ATPLNAFGLGWPFCLDEEGSAEPPTRKDAEPVAAAAAPRASAEPVAQAAPEPVVQAAPEP 385 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 P + G+ E A + L +L Sbjct: 386 PLAPPEPDAAPSPGPETRPEPAAGDGEAGRRPEAAGHDETPAPAAEPAPEVPRPLAPGQL 445 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 S N + R A A S A + P + Sbjct: 446 SLNEHAAFREIARILGARFAGDA------PQDGPSPARDAEEAPRRAGAVTPFPALALAR 499 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ +L+ GI + E +L NRA+ L Y + L Sbjct: 500 APERGPSTAGEVAR-------VLDRLPIGILVHQGE-EVLLANRALLCLADYESAEALT- 550 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + D + + +T+ + L + ++ + + + Sbjct: 551 --AAGGAGSLFRGRDPASLAVGEGDPAGGADHPVVLATRTGEALPVAAVLTPVEWGGAPA 608 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + ++ + A + + + Sbjct: 609 SLL----ALRRLPEEDPARHLRAAELERARQE 636 Score = 43.9 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 35/323 (10%), Positives = 79/323 (24%), Gaps = 21/323 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + +++ G+ ++ G D++ + D I L+R G+ Sbjct: 656 LDERGRVIALNKGAAALFGHEPREVSG---EDLTVLFAQDGRPAIRAALER--ARAGEPA 710 Query: 149 LWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + L P+ R FS ++ A R + Sbjct: 711 STEVAAEGGEPILALTLAPLAQEEPRRFS-----VLLRDVSAARRTEAELLRAKRAAEAA 765 Query: 208 HEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 K + + + M+ + + + S Sbjct: 766 SSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRSSGEHVVSLV 825 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------EG 318 + L + +L+ + L S + + R + F + Sbjct: 826 TDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLMQPQAARQRVVVRTSFANGLRPVLGDQ 885 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSD 377 +L ++ G + + V D I + A + Sbjct: 886 RSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGMTPDEVETALQPFR 945 Query: 378 NNAIKPVMLYRSDRTCIAASARL 400 A R + + L Sbjct: 946 QVATAQNRRGRGTGLGLPLTKAL 968 >gi|298247304|ref|ZP_06971109.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549963|gb|EFH83829.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1110 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 105/770 (13%), Positives = 242/770 (31%), Gaps = 44/770 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD +++ + SE + + W G ++ ++ G+ + Sbjct: 365 TDIDEQKRAQQQLKTSEENWRGLAETVP-QLVWTTSPDGRVEYWNQRWYTYTGSSLEHAL 423 Query: 115 GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + L+ + T Y + A+P+ R Sbjct: 424 GHEWSQFLPPDEYQHTLTVWHHALETGEPYE-IEYRLKEGQTGGYRWFLVRAMPVRDDTR 482 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + + FG K + L E Sbjct: 483 QIV--KWFGTCTDIDDRKQAEQQLKESREHLRVLAETVPQLVWSTGPDGLTEDWNQRFAD 540 Query: 234 L--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQY 288 ++ + + S E+ P + ++ Sbjct: 541 YFQATPEQLRGYGWRQFLHPEEYDHVRAVRDRSLETGEPYEIEYRLREGKTGLYRWFLAR 600 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFY 343 +++ + + ++ ++ ++ + + P + G Y Sbjct: 601 ALPVRDEAGQILKWFGTATDIDEQKQVEQQLKISEQNWRVLAETVPQLVWTVRPDGQHEY 660 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N + T +++ ++ P ++ RL Sbjct: 661 TNQRWHDYTG-STLEHMQSDQWAHLQFIHPDDREDTRA-LWQHALDTGAMYDHEERLRES 718 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 Q + + + G + D + + + ++ +++++ Sbjct: 719 QT--GLYRWFLVRGMPVRDDTGQIVKWFGTCTDIEDQKCIEEALRQSQERIRALIDSNII 776 Query: 464 GIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLD 520 GI + E +++ N A + GY ED+ + + + L EI + Sbjct: 777 GIVSVEGEENVLVEANEAYLHMTGYTQEDVRSRTLSAESTTPPEQAPLFQRALQEITARG 836 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAE 579 LE + K+ L + + ++ D S K+ + + Sbjct: 837 QHTPLETELVC--KDGSRLPVLVGGVIFQERPRLMVSFVLDNSARKELEQR--------- 885 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K F++ SHE+R PL A+ ++ + +R + ++ + Sbjct: 886 -----KDAFISMASHELRNPLAALKMQTQ-LVQKRLERQSLHEAATALSRVEGPVKQLER 939 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ +LLD+SKI++G++ E V LD + E +Q + I++R + + ++ Sbjct: 940 LIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQLSTTHTIVVRGAAPH---LLVG 996 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D + Q+ N++SNAI ++P + I + + V + V D G+G+ + +K + Sbjct: 997 DKDRLGQVFTNLISNAIKYSPDTEAVEIDLSASEE-TVTISVHDHGLGIPREQRDKIFER 1055 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + +Q G G+GL + +V + G + ST KG+ + P Sbjct: 1056 FYRATGPRQRAIPGLGMGLYIVAEIVKRHEGTITVDSTVGKGSTFTVTLP 1105 Score = 127 bits (319), Expect = 8e-27, Method: Composition-based stats. Identities = 51/522 (9%), Positives = 120/522 (22%), Gaps = 33/522 (6%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 F + ID + + +G + G + L K Sbjct: 23 ETLPGAFFF-IDDAATIVYANASAQAMLGAPLEALRGNNFWRCAPYLVSTTLYQAVRKTK 81 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALG 197 + + P+ L+V P G F V + G Sbjct: 82 QARALTEVEYVSPVTQALLHV----HLAP------TVGGLTLQFHEVREPIWRQEIFPQG 131 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 +RL + G + E DI + +R + + ++ Sbjct: 132 ERLCIDDLDGLHTRIGILTPEGIVLDINAVPLDDAQVRREEVIGKPLAEAPWWSSSPGSQ 191 Query: 258 KYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + +S E F + + + + + + Sbjct: 192 EQLRAAIARASTGETAHFEAQLCPREGIVLSSESVITPHLDADHQVEYLVIAGIDITARK 251 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + +D P + N + T + E A G + Sbjct: 252 RAERE---IHALIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLST----EQAQGNGWMQCT 304 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 ++ RL + + G Sbjct: 305 HPADRQRVLEVWQNAVQTGRPYETEQRLRQHTT--GEYRWFLMQAVPFKDAQGTILKYIG 362 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + +++++ + E + + +G + N+ G +E Sbjct: 363 TCTDIDEQKRAQQQLKTSEENWRGLAETVPQLVWTTSPDGRVEYWNQRWYTYTGSSLEHA 422 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551 L ++ FL + L E + + + Sbjct: 423 LGHEWSQFLPPDEYQHTLTVWHHALETGEP--YEIEYRLKEGQTGGYRWFLVRAMPVRDD 480 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + T DI + KQ + +L +++ + + Sbjct: 481 TRQIVKWFGTCTDIDDRKQAEQQLKESREHLRVLAETVPQLV 522 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 77/279 (27%), Gaps = 32/279 (11%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N ++ P FF+ + YAN S + ++ + Sbjct: 1 MSNAKQSKRLTLASSGTLLTMLETLPGAFFFIDDAATIVYANASAQAMLG-APLEALRGN 59 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 AP L + V + R P +A Sbjct: 60 NFW---RCAPYLVSTTLYQAVRKTKQARALTEVE----------------YVSPVTQALL 100 Query: 424 FPENMPQNGIEPEDVDTRIN---KRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTN 478 P G ++++ + +L I L+ I I+ EGI+L N Sbjct: 101 HVHLAPTVGGLTLQFHEVREPIWRQEIFPQGERL-CIDDLDGLHTRIGILTPEGIVLDIN 159 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEK 537 E+++ KP ++ L ++ +T +E Sbjct: 160 AVPLDDAQVRREEVIGKPLAEAPWWSSSPGSQEQLRAAIARASTGETAHFEAQLCPREGI 219 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 +LS +I + + DI+ K+ + ++ Sbjct: 220 VLSSESVITPHLDADHQVEYLVIAGIDITARKRAEREIH 258 >gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 747 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 128/502 (25%), Positives = 216/502 (43%), Gaps = 22/502 (4%) Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E EN VD P F + HGN NP+ +T+Y + + + Sbjct: 248 EEDLKESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIV----- 302 Query: 371 DAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L ++A + V L + S L I N + + + + Sbjct: 303 ---DLHPSDAYEQVNLVFNELVDTGSISTELPFITKNGDRRIWIVEAVKLNED------R 353 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 G + + +I + K++ + +++E +D I + + +G IL N + GY Sbjct: 354 FLGFTTDITERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNELACESLGYIK 413 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547 + +L T F V S D + T + + + + + + Sbjct: 414 DKLLSMNVTDFDPYVDVDVFRDKYWNKTSPDTSYLV--ETYHKRSDGTIYPVEVRLTRID 471 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 L + DI+ KQ ++ L +AK A + KSD +A VSHE+RTPLT IIGFS Sbjct: 472 LGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTIIGFS 531 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +V+ + G L N +Y + I G + +I+N++LD+SKI+SG++++ E +++ E Sbjct: 532 DVLLKGKAGDL-NDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAVHEL 590 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 S V A++K + I T + I AD +K I N+L N++ FT G I I Sbjct: 591 FENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGS-ITI 649 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 N V D+G+G+ N +L + +PF Q+ + GTGLGL L K +V+ Sbjct: 650 KLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLVEL 709 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 + G ++ S G+ P Sbjct: 710 HGGNIWVESEVGTGSKFTFTIP 731 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 6/158 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + ++ + S ++ I +I+R G + N S + Y + ++L Sbjct: 243 ELKKREEDLKESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIV 302 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + +N E++ T E + + ++ + + + Sbjct: 303 DLHPSDAYEQVNLVFNELVDTGSIST-ELPFITKNGDRRIWIVEAVKL---NEDRFLGFT 358 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 DI+E K E++K+ +++ H +D A + H+ Sbjct: 359 TDITERKIEEDKVKESEQRFRTLIEHAAD--AIIVHDF 394 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 66/251 (26%), Gaps = 12/251 (4%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SEN F + + ID HG +++ +++ M + D+ + Sbjct: 253 ESENKFRSYVDYAPF-WIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIVDLHPSDAYE 311 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 N + + L + + G + + I A R F GF Sbjct: 312 QVNLVFNELVDTGSISTELPFITKNG-DRRIWIVEAVKLNEDR------FLGF--TTDIT 362 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEY 246 K +++F L E V +I +K+K+ S+ Sbjct: 363 ERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNELACESLGYIKDKLLSMNVT 422 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + + + + + + L Sbjct: 423 DFDPYVDVDVFRDKYWNKTSPDTSYLVETYHKRSDGTIYPVEVRLTRIDLGGKPAILGFV 482 Query: 307 NHPSLSAYFDE 317 ++ ++ Sbjct: 483 RDITMQKQTED 493 Score = 43.1 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 7/137 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D G + ++E +++G K++ M + D + +D + + ++ +T Sbjct: 393 DFDGNILYVNELACESLGYIKDKLLSMNVTDFDPYVDVDVFRDKYWNKTSPDTSYLVETY 452 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT V + L + + + GF V + + + Sbjct: 453 HKRSDGTIYPVEVRLTRIDLGGKP-AILGF-----VRDITMQKQTEDNLVYAKMEAYAAN 506 Query: 209 EIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 507 QAKSDMIANVSHELRTP 523 >gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 892 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 117/521 (22%), Positives = 206/521 (39%), Gaps = 45/521 (8%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + E + + + + + N + + Sbjct: 79 ALVLQEKTEESLKEKDKRYRALFEHSNDAIIILNGEKVLDLNKKGREAFGLGAREL--DN 136 Query: 364 GGLSTLLDAPKLSDNN-----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + +LL L A + + + I + Sbjct: 137 ISIGSLLSEKDLPAVRDALKTTLENGSACFEMKFRKQNGEVIDVEVSSSFLSLEEGEIQC 196 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471 + + + ++ +L I++ GI +++ Sbjct: 197 VA--------------------RDITTRKKAEKNERESRERLKKIIDNALCGILLVDAST 236 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 I+ N A + G P + F+ ++ + + + Sbjct: 237 HEIVDANPAAVEAIGLPGHRLTGNVCHKFICPVEEGKCP------ITDFKQSVDKSERML 290 Query: 532 STKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + ++ K+ + + D+SE K+ + +L AK AE + KS+FL Sbjct: 291 LNGKGESFPVLKSVVPVKIGENEYLIESFIDLSERKKTEEELLQAKLAAESANRAKSEFL 350 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 +SHE+RTPLTAIIGFS+V+ G + ++ N I SG +L ++N++LD+SK Sbjct: 351 TNMSHELRTPLTAIIGFSDVMLGGISGEFS-EQNKKFLNNIANSGKHLLTLINNILDLSK 409 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IE+GKM L FE S+ E ++ ++ A +K I ++ + + I + AD KQI Sbjct: 410 IEAGKMELEFEMFSVSEVFNDTRAVTSALALKKDISMKYNVDSEIL-VYADRVRFKQIIY 468 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNAI FTP G +I+S T + V + V DTG+G++ + +PF QI S Sbjct: 469 NLVSNAIKFTPDRGSVIVSALKTED-SVRISVSDTGIGISEENQKLLFQPFRQIDASINR 527 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL L K V+ + G+ + S P KG+ E PL Sbjct: 528 HYEGTGLGLALVKKFVNLHGGRVWAESEPGKGSTFEFELPL 568 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 8/173 (4%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 +E V + ++ + + ++ E ++D I I+N E +L N+ + FG Sbjct: 71 RRWMELENALVLQEKTEESLKEKDKRYRALFEHSNDAIIILNGE-KVLDLNKKGREAFGL 129 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++ L + + L L + +++ + + Sbjct: 130 GARELDNISIGSLLSEKDLPAVRDALKTTLENGSAC---FEMKFRKQNGEVIDVEVSSSF 186 Query: 548 LP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVS-HEI 596 L DI+ K+ + +++ +K ++ L S HEI Sbjct: 187 LSLEEGEIQCVARDITTRKKAEKNERESRERLKKIIDNALCGILLVDASTHEI 239 >gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 919 Score = 409 bits (1050), Expect = e-111, Method: Composition-based stats. Identities = 119/639 (18%), Positives = 233/639 (36%), Gaps = 28/639 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + R+ ++ + + +S + + + P + L Sbjct: 43 RQSDDAVRRSEEQLRISQRIARIGSWDLDLASGRLDCSEELCRIFSVPLDEAPDNYDGLL 102 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + S + + + +++S + +S Sbjct: 103 AILPEYGKDALAAAVEEALAGRDSFAVEYSVERPGGKESFLFEVGEVFRDDSGAALRVVS 162 Query: 305 HRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDI 360 S + EN ++ P F+ ++ N SF + D Sbjct: 163 VVQDVSEQKEAENALFFENRYRGLIENLPQRIFLKDCNSVYLSCNSSFARDLGVEPSDVF 222 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L AP+L+ D +A A + + + ++ Sbjct: 223 GK---TDYDLFAPELAKKRQED-------DGKVMAGGAAVERDEQRERDGAWISKALIPL 272 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + GI + + + ++ + SI E + GI + G ++ NR Sbjct: 273 RDDNDRVYALLGILTDITFRKRAEEQLRESEERFRSIFEQAAVGICHLTLSGELIRINRR 332 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + GY E++L + + +LS ++ ++ + Sbjct: 333 FCDILGYEQEELLGWSLEQTIHPDDREAEQRQAARLLSREID-NYSIEIRQMRHDDTPVW 391 Query: 541 LRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + + D++ ++ + +L H + + + S KS FLA + HEI Sbjct: 392 VNLTKSLVCGPKGEPKYLAGIIEDVTANREAE-ELRHERDLVQAASRAKSQFLANMGHEI 450 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL A++G S + + + Y I S +L+I+ND+LD SK+E+GK+ Sbjct: 451 RTPLNAVMGLSRLALKTEL----DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLE 506 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L ++L E + + Q A EK I R A ++P ++ D + Q+ N+++NA Sbjct: 507 LEKTDLNLYEVLGNISDMHQSKAQEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANA 566 Query: 716 IHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 + FT G ++ I EEV+ V+DTG+G+ ++ K PF Q +S R Sbjct: 567 VKFTEKGEVVVAIKPLRREEEEVVVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRYG 626 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL +++ +V+ G+ + S P G+ PL Sbjct: 627 GTGLGLSISRQLVELMGGELQVESVPGSGSSFSFTVPLA 665 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 42/352 (11%), Positives = 88/352 (25%), Gaps = 26/352 (7%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 FE + +++ S D +++ + N L EN + R + D + Sbjct: 144 FEVGEVFRDDSGAALRVVSVVQDVSEQKEAE-NALFFENRYRGLIENLPQR-IFLKDCNS 201 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + + +G + G D+ + + + Sbjct: 202 VYLSCNSSFARDLGVEPSDVFGKTDYDLFAPELAKKRQEDDGKVMAGGAAVERDEQRERD 261 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G I A +P+ N + GI+ + +++F + E Sbjct: 262 G----AWISKALIPLRDDNDRV--YALLGILTDITFRKRAEEQLRESEERFRSIFEQAAV 315 Query: 214 HSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLTSEESS 268 ++ + + E H DD + LL+ E + Sbjct: 316 GICHLTLSGELIRINRRFCDILGYEQEELLGWSLEQTIHPDDREAEQRQAARLLSREIDN 375 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + E +YL+ + E + V Sbjct: 376 YSIEIRQMRHDDTPVWVNLTKSLVCGPKGE-PKYLAGIIEDVTANREAEELRHERDLVQA 434 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 A FL ++ + GLS L +L Sbjct: 435 AS------------RAKSQFLANMGHEIRTPLNAVMGLSRLALKTELDRKQR 474 >gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6] Length = 1090 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 140/783 (17%), Positives = 272/783 (34%), Gaps = 94/783 (12%) Query: 89 IDAHGY--------LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 +D G ++ ++ + + +L Sbjct: 185 LDEEGRDQISLGYEWISGNDGDARSAKIRHPDLSYEAYSSI---------PQWFQILSGG 235 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAAL------PIYSRNREFSGFRGFGIVHVNRV----- 189 +G+T P P++ + PI++ +R F GF GF + R Sbjct: 236 MPIWGRTRDLPPSARG---PLETMGVRSFMIVPIFTTDR-FWGFIGFEDYRLERDWSWSV 291 Query: 190 ----------------DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---P 230 + + ++K+ L E I Sbjct: 292 AFILMTMASAIGGFIGRFKAESALRESEEKYRELVETSSSVIIRVDTSGAIRFINKFGLH 351 Query: 231 PPHLRMKNKVSSLTEYYAHKDDV----LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + LK + + E + N Sbjct: 352 FFGYNEEDILGRNVTETIFPPGGIGCNLKAIIGHIRENPEECSTHIAENIRSNGELVWIA 411 Query: 287 QYFGTLQNNSKESFEYLSHRNHP-----------SLSAYFDEGENLTPETVDKCPIPFFV 335 +QN E E L N ++A E + + P V Sbjct: 412 WAHRLVQNERGEVVEVLCIGNDITEKKRSSEELKRVAADLRETRDYLDNLLSHANAPIIV 471 Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + + N +F LT +++ + + + G+ L ++ + R+ Sbjct: 472 WDPNFCITRFNHAFERLTGWRADEVLGRSLGI--LFPD----ESRTESFAYIERTLSGES 525 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + N E + + + + ++ + ++ + Sbjct: 526 WNAVEIPICHQNGEVRTVLWNSANIYDEAGRRVIATIAQGQDITERKMAEERVAFQ---- 581 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYL 513 S+L+ + + + +G I+ NR L+ + E++L L + Sbjct: 582 ASLLDQVRNAVIATDFDGRIIYWNRFAESLYQWKAEEVLGASIKDTILPPEMKYNVEMVT 641 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569 EIL+ LE L K+ I + + D++E K+ + Sbjct: 642 KEILAKG---YLECEYLVKRKDGSRFPASYIFSTICDNRQRRIGIISVSTDLTERKKVEQ 698 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L AK+ AE + KS+FLA +SHEIRTP+ A+IGF+ ++ N + +Y Sbjct: 699 DLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSV----QRDYIET 754 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG+ +L +++D+LD SKIE G M L E + L E + +++LV A+ K + + Sbjct: 755 IHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDASRKGLSVSYE 814 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTG 745 +PR ++ D+ ++QI +N+L NA+ FT G + + + E+ RV D+G Sbjct: 815 VEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDKGF-VRLDVSALPVEDGHEIQFRVTDSG 873 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ + + + F Q+ S + GTGLGL + K + + G + S P +G+ Sbjct: 874 IGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAESVPGEGSSFY 933 Query: 806 IIF 808 Sbjct: 934 FTI 936 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 36/388 (9%), Positives = 95/388 (24%), Gaps = 32/388 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH------IDPNNHIGDLLKRQN 141 +D G ++ I++ G ++G + + HI + + + Sbjct: 335 RVDTSGAIRFINKFGLHFFGYNEEDILGRNVTETIFPPGGIGCNLKAIIGHIRENPEECS 394 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T + V I A + + E I + KR+ Sbjct: 395 THIAENIRSN----GELVWIAWAHRLVQNERGEVVEV--LCIGNDITEKKRSSEELKRVA 448 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRM---KNKVSSLTEYYAHKDD 252 + S ++ ++V + D+ Sbjct: 449 ADLRETRDYLDNLLSHANAPIIVWDPNFCITRFNHAFERLTGWRADEVLGRSLGILFPDE 508 Query: 253 VLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-FEYLSHRNHP 309 S ES + N T + + + ++ Sbjct: 509 SRTESFAYIERTLSGESWNAVEIPICHQNGEVRTVLWNSANIYDEAGRRVIATIAQGQDI 568 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + +E +D+ G + Y N L ++K+ + + A T Sbjct: 569 TERKMAEERVAFQASLLDQVRNAVIATDFDGRIIYWNRFAESLYQWKAEEVL-GASIKDT 627 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 +L + + +L + + + ++I + + Sbjct: 628 ILPPEMKYNVEMVTKEILAKG-----YLECEYLVKRKDGSR-FPASYIFSTICDNRQRRI 681 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + + ++ + + S Sbjct: 682 GIISVSTDLTERKKVEQDLRDAKERAES 709 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 S LE DGI I + G IL +N A ++ Sbjct: 4 ERMFQSTLEILEDGICICDPSGEILYSNPAAERM 37 >gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1248 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 124/737 (16%), Positives = 258/737 (35%), Gaps = 44/737 (5%) Query: 95 LKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPN------NHIGDLLKRQNTWYGKT 147 + + + + +G ++ + + +S D I +L+ + + Sbjct: 106 IIDCNVAAVRMLGFESKEALLTVPMSSLSPESQPDGAKSMERAAEIRRVLREKGRHTCEW 165 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L G + V I L + + R + + H + A + +++F Sbjct: 166 NLRRKGGDEMTVEITLTVVELMGRTVQL------AVWHDLTERKEAEAALRESEERFQAF 219 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + ++ E + H + K L +L Sbjct: 220 MNHSPVLAFIKDENGRMLYINEVMEHRFQMKLEDIFGKTDFDWLPHDKATRLTAVDREVL 279 Query: 263 TSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 S + E + K GT + + E Sbjct: 280 ASGLPQQLIEEVPTPDGVMHEWLVMKFSMGTSDGAKMLGGVAIDVGEQRRAERALQQSER 339 Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E D P+ + + N + L + Y ++++ L+ Sbjct: 340 HFRELFDDAPVAYHELDLENRITRVNATELNMLGY-RLEEMVGRPVTEFLI-------GE 391 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + A + + + + + + + Sbjct: 392 YTGTTVQQPAVGDPLH-EAFERSFRRKDGRRVPVLMRQRVMTDAAGKICGTRATLQDISA 450 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + ++ + SI E +GI EG +S N A++++ GY D L T Sbjct: 451 LKRKELELRDAEEKYRSIFENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSKITH 510 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 +Q + L+ + + ++ ++ + + + Y Sbjct: 511 IAKQLYVRPGRRAEFTAMMLEKGAVKDFESQIYRRDRSIIWISERARAVRDQDGKLLYYE 570 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T+ DI+ ++ + + A+ A + + KS+FLA +SHEIRTP+ IIG + ++ + Sbjct: 571 GTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTEL 630 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + ++ I S + +L I+ND+LD SKIE+G + L V ++ L+ Sbjct: 631 SP----KQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELL 686 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A + I + + +++P + D ++Q+ N++ NA+ FT G ++++ N Sbjct: 687 AARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKG-EVVVRANCQEN 745 Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E + V DTG+G+++ E+ +PF Q S R GTGLGL + K +V G Sbjct: 746 AETHTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGG 805 Query: 791 KFYIFSTPAKGTLIEII 807 + + S KG+ Sbjct: 806 EIGVTSEAGKGSTFWFT 822 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 18/228 (7%) Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 D E L + A K + L R I N E + Sbjct: 3 DFESVRDSEWLTLWKDECEVEARKALTLAR---ESQTGQFLGSCIAANGERKHW-DVVLT 58 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + + + D R + + I E +SD + +++ I+ N Sbjct: 59 TINDAAGKPEKLLAVSRDVTDRRAAE-------EKFRIIFEQSSDAHLLFSKD-SIIDCN 110 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMNHYLTEILSLDLRQTLEKITLGS 532 A ++ G+ ++ L L + + +L R T E Sbjct: 111 VAAVRMLGFESKEALLTVPMSSLSPESQPDGAKSMERAAEIRRVLREKGRHTCEWNLRRK 170 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 +E + + + + +L + HD++E K+ + L +++ + Sbjct: 171 GGDEMTVEITLTVVELMGRTVQLAVWHDLTERKEAEAALRESEERFQA 218 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 36/385 (9%), Positives = 96/385 (24%), Gaps = 19/385 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D +G + I+E + + G D + + Sbjct: 231 DENGRMLYINEVMEHRFQMKLEDIFGKTDFDWLPHDKATRLTAVDREVLASGLPQQLIEE 290 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 P ++ + + S + G + R + + + + F Sbjct: 291 VPTPDGVMHEWLVMKFSMGTSDGAKMLGGVAIDVGEQRRAERALQQSERHFRELFDD-AP 349 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + +E + + + R++ V + + T + P + Sbjct: 350 VAYHELDLENRITRVNATELNMLGYRLEEMVGRPVTEFLIGEYTGTTVQQPAVGDP-LHE 408 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----T 325 + F + + + + + + + S + E Sbjct: 409 AFERSFRRKDGRRVPVLMRQRVMTDAAGKICGTRATLQDISALKRKELELRDAEEKYRSI 468 Query: 326 VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + F G+ NP+ + Y+S D++ ++ + + + Sbjct: 469 FENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSK--ITHIAKQLYVRPGRRAEFT 526 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN- 443 + I + + ++ +Q + + G + R Sbjct: 527 AMMLEKGAVKDFE---SQIYRRDRSIIWISERARAVRDQDGKLLYYEGTVEDITARRETD 583 Query: 444 -----KRKMEIEVMQLCS-ILEATS 462 R +E +L S L S Sbjct: 584 DAIKKARDAALESARLKSEFLANMS 608 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 39/424 (9%), Positives = 110/424 (25%), Gaps = 32/424 (7%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 SE F V + +D + ++ +G +M+G + + + Sbjct: 336 QSERHFRELFDDAPVAYH-ELDLENRITRVNATELNMLGYRLEEMVGRPVTEFLIGEY-T 393 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 + + + +G VP+ + + + G R + Sbjct: 394 GTTVQQPAVGDPLHEAFERSFRRKDGR--RVPVLMRQRVMTDAAGKICGTR--ATLQDIS 449 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTE 245 + ++K+ + E + S + ++++S Sbjct: 450 ALKRKELELRDAEEKYRSIFENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSKIT 509 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + A + V + + + + + + +++ + Y Sbjct: 510 HIAKQLYVRPGRRAEFTAMMLEKGAVKDFESQIYRRDRSIIWISERARAVRDQDGKLLYY 569 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + D+ + + F AN S + T + Sbjct: 570 EGTVEDITARRETDDAIKKARD------AALESARLKSEFLANMSHEIRTP------MNG 617 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G++ LL +LS + S + + LA I F+ Sbjct: 618 IIGMTGLLLDTELSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGT 677 Query: 423 QFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEA-TSDGIAIINREGII 474 ++ + + + + +L +L + + ++ ++ Sbjct: 678 VVEGSVELLAARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVV 737 Query: 475 LSTN 478 + N Sbjct: 738 VRAN 741 >gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 128/763 (16%), Positives = 261/763 (34%), Gaps = 47/763 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS------DILHI-----DPNNHIGDLLKR 139 ++ IS ++G +V + D I + Sbjct: 56 PDASIRAISRHGLSLFDRPREAILGCTGPEVIKEWKVFHPDGVTQAEYDELPLIRAMTNG 115 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 ++ + + +G +P+ + A PI + +G G + Sbjct: 116 EDVREEEWIILRPDG--KKIPVLINAGPIRGKEGTITG--GVLAWIETEKRKQLEEALRE 171 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTE 257 + ++ E + + + I + + ++ + Sbjct: 172 SEARYRSFFEASRDVVLLTSPEGSILAANKAAQEMYGATEEELIEKGRQVFVDTSDPRLG 231 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQ---YFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + S + + + + F T+ + + Sbjct: 232 AFLEERTRTGSARGEYRSRRKDGTLFPTEASSGVFTTMDGILRTTTILRDITERKRAEQA 291 Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E+L +D P+ F+ G + NP+ + ++ A Sbjct: 292 LRESEDLLSRVLDALPVGVFIADAQGGIARVNPAGERIWGGARRAPLDRLDEYKG-WWAD 350 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 A + +R + + + ++ + + + + Sbjct: 351 SGRRIEAREWAFARAFERGETSMNEIIDIECFDGARKT-IRNAAVPVRDASGRIISAIAV 409 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + R + + +Q ++ E + D I + + L N ++ G P E Sbjct: 410 IEDISAERRAQEALRNREVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFK 469 Query: 494 RKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS 551 K L ++ + + + QTLE S + ++ + Sbjct: 470 GKRIGQLGLPKDLQCSIAKAVHAVRKTGQEQTLEWSWETSVGTKHFQTMFAPEASRDGGV 529 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +I+ ++ + L A+ AE+ + KS FLA +SHEIRTP+ I+G E+ Sbjct: 530 DSVLTISREITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVELAL 589 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + R EY Y S +LDIVND+LD+SKIE+G+M L E + Sbjct: 590 MGC----KDARSREYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESL 645 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---III 727 ++ A +K + +T N+P R++ D ++QI N++ NA+ +T G + Sbjct: 646 FAIQGSQAEQKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTA 705 Query: 728 STTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 E+ ++ +RDTG+G+ +L + +PF + +Q GTGLG Sbjct: 706 EVLKQDQEQGEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTR--GAQDAEFGGTGLG 763 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 L + K +V+ G+ + ST +G+ + L T+ P + I Sbjct: 764 LTITKQLVELMNGRIDVRSTLGQGSTFTVSL-LLQTA-PKEAI 804 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 92/386 (23%), Gaps = 43/386 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYG 145 G + ++ + G ++I + + +G L+ + + G Sbjct: 190 TSPEGSILAANKAAQEMYGATEEELIEKGRQ----VFVDTSDPRLGAFLEERTRTGSARG 245 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG----IVHVNRVDNDPRALGKRLD 201 + +GT P + + F+ G I+ + + Sbjct: 246 EYRSRRKDGTLF---------PTEASSGVFTTMDGILRTTTILRDITERKRAEQALRESE 296 Query: 202 KKFSH----------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 S + + + G + V I+ P R+ + + Sbjct: 297 DLLSRVLDALPVGVFIADAQGGIARVNPAGERIWGGARRAPLDRLDEYKGWWADSG-RRI 355 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + E+S+ E D + + T + +++ S ++ S Sbjct: 356 EAREWAFARAFERGETSMNEIIDIECFDGARKTIRNAAVPVRDASGRIISAIAVIEDISA 415 Query: 312 SAYFDEGEN----LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366 E + P YS + Y NPS G Sbjct: 416 ERRAQEALRNREVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFKGKRIGQ 475 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L PK + K V R F P + + Sbjct: 476 LGL---PKDLQCSIAKAVHAVRKTGQEQTLEW--SWETSVGTKHFQTMFAPEASRDGGVD 530 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVM 452 I E R + + Sbjct: 531 --SVLTISREITSLRRLEEDLRRARD 554 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 13/162 (8%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILR----- 494 R + E L SI E +G+ I + I + +R LF P E IL Sbjct: 26 RKRLAEAEKSEQLLKSIFEYIPEGLIIAEVPDASIRAISRHGLSLFDRPREAILGCTGPE 85 Query: 495 --KPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 K + VF L I + + E+ + + K + + I + Sbjct: 86 VIKEWKVFHPDGVTQAEYDELPLIRAMTNGEDVREEEWIILRPDGKKIPVLINAGPIRGK 145 Query: 552 SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 L + + KQ + L ++ D + Sbjct: 146 EGTITGGVLAWIETEKRKQLEEALRESEARYRSFFEASRDVV 187 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 24/260 (9%), Positives = 60/260 (23%), Gaps = 20/260 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-----RLCDVSDILHIDPNNHIGDLLKRQ 140 + DA G + ++ + G + S +R Sbjct: 310 VFIADAQGGIARVNPAGERIWGGARRAPLDRLDEYKGWWADSGRRIEAREWAFARAFERG 369 Query: 141 NTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 T + +G I AA+P+ + ++ + + + Sbjct: 370 ETSMNEIIDIECFDG--ARKTIRNAAVPVRDASGRII--SAIAVIEDISAERRAQEALRN 425 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDD 252 + ++ L E PP ++ L + Sbjct: 426 REVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFKGKRIGQLGLPKDLQCS 485 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + K T +E +L ++ + F + L+ + Sbjct: 486 IAKAVHAVRKTGQEQTLEW---SWETSVGTKHFQTMFAPEASRDGGVDSVLTISREITSL 542 Query: 313 AYFDEGENLTPETVDKCPIP 332 +E + ++ Sbjct: 543 RRLEEDLRRARDAAEEANRA 562 >gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2] gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 891 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 137/738 (18%), Positives = 247/738 (33%), Gaps = 46/738 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G L+ IS + K +G +M+G + I D G + K + Sbjct: 156 ADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHIEDADYMRVHGMFKETG---IMKRRVR 212 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--FSHLH 208 +G Y+ ++++ I + R I + + F Sbjct: 213 HKDGH--YLWLEVSYRIIRDEQGKIK--RVLSIGRNITERQKSEENLAKAQQLAMFGSWD 268 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + +++ P + + L E + Sbjct: 269 WDLVNNVMHFSKEFRSIFGYRVKPVETSIDAFMKAVHPEDTERMKQIINNVILKGIHEET 328 Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + L + + + H + E EN Sbjct: 329 FYRIVLPNGEQKVLRSIWEAEMDEHAGKPVQVVGMIQDVTEHREIEQRLRESENRYKSLF 388 Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 P+ + G++ NPS LT Y + + + +L + + IK + Sbjct: 389 QHNPLGICAMNMEGHILSVNPSLEKLTGYTRDELLG-----TEILVMASSEEQDKIKRHI 443 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + I E + E + GI + Sbjct: 444 EMAKQGETQTYESEF--IHKEGER--LFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIA 499 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++E + IL A S+GI +N EG + N A ++FG + L + Sbjct: 500 QIEKLSNEHSLILNAVSEGIVGLNTEGHVRFMNPAAVEMFGIGSANPLNGSCIDVIRHAD 559 Query: 506 P-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 + + + E+ K+ I L + + Sbjct: 560 EIGSHFPDEQASILQAIRSGASYQAEEAVFWK-KDGSSFLASYRISPLMDNGERKGAVMV 618 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D + + ++ AK+ AE+ KS+FL+ +SHE+RTP+ IIG + ++ + Sbjct: 619 FVDRT----NEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL-- 672 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + Y + I S N ++ I+N++LD+SKIE+GKM+L E L++ V L Sbjct: 673 --DEEQRSYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMT 730 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I + +P ++ D ++QI +N++SNAI FT G + I + Sbjct: 731 QAMEKGIQLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTERG-HVNIFVERKAYSR 789 Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V DTG+G+ +PF Q+ + + GTGLGL + K +V G Sbjct: 790 RKKKCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGG 849 Query: 791 KFYIFSTPAKGTLIEIIF 808 + S A+G Sbjct: 850 SIGVDSDEARGATFRFQL 867 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 63/570 (11%), Positives = 160/570 (28%), Gaps = 38/570 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWY 144 + G ++ K +G +++ +R + D L + Sbjct: 25 LSREGKCLYVNPAFCKMVGYEQEELLDIRYYHLLYNEAQDQQGLREAYAGWLKATDQVYK 84 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L GT +++ ++L I+ + D + + + Sbjct: 85 TELRLKHKRGTTVWLSLELT---IFDDEATEQSYL-IAYAMDVTEKKDMEQVLSDNEDLY 140 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + E S + L K L + + + + Sbjct: 141 MLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHIEDADYMRVHGM 200 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + + + +++ + LS + + +E + Sbjct: 201 FKETGIMKRRVRHKDGHYLWLEVSYRIIRDEQGKIKRVLSIGRNITERQKSEENLAKAQQ 260 Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + N+ + + F + Y+ + + A D +K Sbjct: 261 L---AMFGSWDWDLVNNVMHFSKEFRSIFGYRVKPV---ETSIDAFMKAVHPEDTERMKQ 314 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 ++ I + N E + + E + + G+ + + R Sbjct: 315 IINNVIL-KGIHEETFYRIVLPNGEQKVLRSIWEAEMDEHAGKPVQVVGMIQDVTEHREI 373 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++++ + S+ + GI +N EG ILS N ++ KL GY +++L V Sbjct: 374 EQRLRESENRYKSLFQHNPLGICAMNMEGHILSVNPSLEKLTGYTRDELLGTEILVMASS 433 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS 562 + ++ + QT E + E + + I + + +++ Sbjct: 434 EEQDKIKRHIE-MAKQGETQTYESEFIHKEGERLFIKMTNIPIFVQEEIVGCYGIIENVT 492 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSD------------FLARVSHEI-----RTPLTAIIG 605 K ++ + S+ F+ + E+ PL Sbjct: 493 PLKNYIAQIEKLSNEHSLILNAVSEGIVGLNTEGHVRFMNPAAVEMFGIGSANPLNG--S 550 Query: 606 FSEVIKN-QRFGPLGNPRYIEYANYIDRSG 634 +VI++ G I Sbjct: 551 CIDVIRHADEIGSHFPDEQASILQAIRSGA 580 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 111/341 (32%), Gaps = 32/341 (9%) Query: 314 YFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + L + P + G Y NP+F + Y+ + ++I L + Sbjct: 3 SAAQRLPLLEHMYNHAPTGIVILSREGKCLYVNPAFCKMVGYEQEELLDIRY-YHLLYNE 61 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + ++ RL + ++ ++ ++ E Sbjct: 62 AQDQQGLREAYAGWLKATDQVYKTELRLKHKR---GTTVWLSLELTIFDDEATEQSYLIA 118 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + ++ + I E T D I+ +GI+ + +V KL GY +++ Sbjct: 119 YAMDVTEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEM 178 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L K F M + ++T K+ L L + + + Sbjct: 179 LGKKRLQFYHIEDADYMR------VHGMFKETGIMKRRVRHKDGHYLWLEVSYRIIRDEQ 232 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH---EIRTPLTAIIG 605 +I+E ++ + L+ A+++A S D + V H E R +I G Sbjct: 233 GKIKRVLSIGRNITERQKSEENLAKAQQLAMFGSWDW-DLVNNVMHFSKEFR----SIFG 287 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYID-RSGNLVLDIVNDLL 645 + R P+ + + + I+N+++ Sbjct: 288 Y-------RVKPVETS-IDAFMKAVHPEDTERMKQIINNVI 320 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 41/140 (29%), Gaps = 17/140 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFK-------MIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 ++ G+++ ++ + G + + ++ D I ++ Sbjct: 522 LNTEGHVRFMNPAAVEMFGIGSANPLNGSCIDVIRHADEIGSHF-PDEQASILQAIRSGA 580 Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-----VNRVDNDPRA 195 ++ + W +G++ ++ P+ N E G + + R Sbjct: 581 SYQAEEAVFWKKDGSSFLASYRIS--PLMD-NGERKGAVMVFVDRTNEKEIIRAKESAER 637 Query: 196 LGKRLDKKFSHLHEIKKGHS 215 + + S + + Sbjct: 638 ADRAKSEFLSVMSHELRTPM 657 >gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72] Length = 1208 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 118/631 (18%), Positives = 234/631 (37%), Gaps = 39/631 (6%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 R + + + + P M ++ ++ + + + Sbjct: 189 PLRRMLGALERVRSFEADQARGSDSGRELIDEVPEEFRPMFEVLARTSDSLRRELEAREK 248 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + LP ++ ++ E ++ R Sbjct: 249 TLASLRALLGTILPADAPAGGAP---------LDDIETVTRAIGELVAEREAGRRELDHQ 299 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + +D+ I G + YAN F ++ Y + + G S + Sbjct: 300 KFA------LDQHGIVSITDRAGLITYANDRFCEISGYSREELL----GASHRIVKSDYH 349 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + T ++ + I + Sbjct: 350 PPEFYADMWRTIRGGRVWHGEIKNRTKS---GEPFWVSATIVPLPDADGVPERFISIRTD 406 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + ++ ++ +LE+ I + + +G L NRA +++G E + Sbjct: 407 ITERKDIEARLAEQLHFTELLLESIPTAIYLKDADGRYLRFNRAFEEMYGIDREKWYGRR 466 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPFSS 552 + + +M+ E+L Q+ E + ++ R+ + + Sbjct: 467 VLELVPGDEGRLMHKKDLELLQEGGHQSYEARIVNRRTGQHRDGLFWKARLT-RADGTVT 525 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ K+ + +L A+++AE S KSDFLA +SHEIRTP+ IIG +E+ + Sbjct: 526 GLVGAVIDITDRKRVEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALD 585 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R +P +Y N + S +L IVND+LD SKIE+GK+ + + AV+EA+ Sbjct: 586 TRL----DPTQRDYLNIVLSSAESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEAL 641 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + A K++ + ++P ++ D ++Q+ N+ NA+ FT +G +I + Sbjct: 642 KSISTRAERKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAG-EIAVRVRA 700 Query: 732 TSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + V DTG+G+ + + + F Q S R GTGLGL ++ +V Sbjct: 701 EPSAAGGDALIAHFEVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLV 760 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+ ++ STP G+ L + P Sbjct: 761 GLMGGRIWVDSTPGVGSTFHFTVRLKRRAEP 791 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 21/250 (8%), Positives = 55/250 (22%), Gaps = 10/250 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147 D G + ++ + G +++G V H + + ++ W+G+ Sbjct: 312 TDRAGLITYANDRFCEISGYSREELLGASHRIVKSDYHPPEFYADMWRTIRGGRVWHGEI 371 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + +P+ + R I D A L Sbjct: 372 KNRTKSGEPF--WVSATIVPLPDADGVPE--RFISIRTDITERKDIEARLAEQLHFTELL 427 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E ++ + ++ + E Sbjct: 428 LESIPTAIYLKDADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHKKDLELL 487 Query: 268 SLPEQEDFHTINLNQYTKKQYFG-----TLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + +N+ T + G L + + ++ Sbjct: 488 QEGGHQSYEARIVNRRTGQHRDGLFWKARLTRADGTVTGLVGAVIDITDRKRVEQELESA 547 Query: 323 PETVDKCPIP 332 + + Sbjct: 548 RQLAEAASQA 557 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 18/256 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148 DA G + + G K G R+ ++ + +LL+ + Sbjct: 439 DADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHKKDLELLQEGGHQSYEAR 498 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + T + + + +G G I + + Sbjct: 499 IVNRR-TGQHRDGLFWKARLTRADGTVTGLVGAVI--DITDRKRVEQELESARQLAEAAS 555 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + K + + + D L + L SS Sbjct: 556 QAKSDFLANMSHEIRTPMN-------------GIIGMTELALDTRLDPTQRDYLNIVLSS 602 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L+ + ++ ++ + + E Sbjct: 603 AESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEALKSISTRAERKKLRFAYELSPD 662 Query: 329 CPIPFFVYSHGNLFYA 344 P G + Sbjct: 663 LP-AVVAGDSGRIRQV 677 >gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 916 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 116/622 (18%), Positives = 231/622 (37%), Gaps = 26/622 (4%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + L + + + + + R+ + L+ Sbjct: 17 SEAELADLLASIRTAGTTLEPAFRGILEGLGDLLSRVDASYEQYERDLELRTRSLEISSA 76 Query: 260 PLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + E + T + + +++ E ++A E Sbjct: 77 ELSAANEKLRQSLAGRDNALRSLRKTIRDHLPEANEDAETLAEEDIAVLSRRVAAMVAES 136 Query: 319 ENLTPET------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E+ E +D+ I + G + YAN F ++ Y + I + + Sbjct: 137 EHGLRELANQKFALDQHAIVSITDTAGIITYANDRFCAISGYAREELIGQ----NHRIVN 192 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + + + + E Sbjct: 193 SGIHPPELFRDMWHTIVLGKVWHGEVCNRA---RDGHLYWVNATVVPLLDAKGEPERYIA 249 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 I E D + + ++ ++ + ++E I + + G + NRA + F E Sbjct: 250 IRTEITDRKRMEAQLSEQLHLVEELIENIPLPIYLKDGSGRYIRLNRAFEQFFEVRREAF 309 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPF 550 + + L ++ + QT E E + ++ ++ Sbjct: 310 IGRTLHDLLPAEDARQHAEMDADLFAAKGTQTYEATVHSQDGIAHETIYRKAVLTRRDGS 369 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S + DI++ K+ + ++ AK+ AE + KSDFLA +SHEIRTP+ +IG +++ Sbjct: 370 VSGLLGIIVDITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLA 429 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 EY N S +L ++ND+LD SKIE+GK+ + P L +++ Sbjct: 430 LETAL----TEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIAD 485 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + + L A+EK I I + +++PR + D ++Q+ +N++ NAI FT G +I + Sbjct: 486 TLKPLALRAHEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQG-EIALQA 544 Query: 730 TH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + VRDTG+G++ + F Q +S + GTGLGL + + +V Sbjct: 545 DLMQLQNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLV 604 Query: 786 DANMGKFYIFSTPAKGTLIEII 807 + G ++ S P KG+ Sbjct: 605 ELMGGTLWLHSEPGKGSTFHFS 626 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 26/251 (10%), Positives = 56/251 (22%), Gaps = 13/251 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145 D G + ++ G ++IG V + + +L W+G Sbjct: 159 TDTAGIITYANDRFCAISGYAREELIGQNHRIVNSGIHPPELFRDMWHTIVL--GKVWHG 216 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G ++ +P+ E R I A Sbjct: 217 EVCNRARDGHLY--WVNATVVPLLDAKGEPE--RYIAIRTEITDRKRMEAQLSEQLHLVE 272 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPH----LRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E ++ R +L + +D E Sbjct: 273 ELIENIPLPIYLKDGSGRYIRLNRAFEQFFEVRREAFIGRTLHDLLPAEDARQHAEMDAD 332 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + + + H+ + + L L + + Sbjct: 333 LFAAKGTQTYEATVHSQDGIAHETIYRKAVLTRRDGSVSGLLGIIVDITDRKRAEIEVLR 392 Query: 322 TPETVDKCPIP 332 E + Sbjct: 393 AKEAAEAANRA 403 >gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1765 Score = 405 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 136/755 (18%), Positives = 263/755 (34%), Gaps = 52/755 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT---- 148 G L + + G +M+ M + ++ + + + + Sbjct: 529 GQLVFTNSRCQRLFGYDEQQMLAMSVDELVPEAVREQHADLRAQFVAEGQDRKMGLGKSL 588 Query: 149 -LWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G V I L LPI R+ + V ++ + K + +F Sbjct: 589 KARKSDGGEFPVEICLGLLPIADDGQRQVA-----ATVRDMTLELEIAQQIKDSESRFRG 643 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP---------PPHLRMKNKVSSLTEYYAHKDDVLKTE 257 L G + + P ++N S +D T+ Sbjct: 644 LVANIPGAVYRTRVGDSWVMEYISSNISDITGFPASDFIENSHRSFASLIIEQDLAATTQ 703 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ S Q + + + + + N+ + + N + S E Sbjct: 704 AIEQALLKQKSFEVQYRIKHRDGSIHWVHEKGKAIYNDDGVALWFDGSINDITSSKLAQE 763 Query: 318 ----GENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + P + + + + + + + + Sbjct: 764 KIAQSQQQLETITESIPSTVYQLHWCNNKDRTFTFLSSACITTLGFHRDEVMSNFD---- 819 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L A + + + + + + + Sbjct: 820 -LVAECIISEERSHIIEALSGKSSKGLQWTEEFRYRHPIGDIRWLQAGAQGDLQADGCII 878 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 NG + D + +E ++ + GI ++ G IL N S Sbjct: 879 -WNGYLMDITDRKQIDMDLEDREAHFRALFDNAGIGIVNVDERGNILDCNEQFSLYMQTD 937 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 V + + F F + +++ L + + + + I + KL Sbjct: 938 VAHLKSRSFFDFQHNDDRDKARSVFAKLIEGGSDNILT-ELRLLNQSGECMWMDITLTKL 996 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 L+M +I+ KQ L AK A+ + KSDFLA +SHEIRTP+ AII Sbjct: 997 QDKHGKLTSVVLSMANITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAII 1056 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S++ + + Y IDR+ +L I+ND+LD SKIE+GK+++ L Sbjct: 1057 GMSQLCLQTEL----DAKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQL 1112 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 D + + + + A++KR+ + + A NIPR +L D + Q+ +N+++NAI FT G Sbjct: 1113 DTLLEDLSDMFSVKASDKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQG- 1171 Query: 724 QIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++++S + + VRD G+G+T + + K F Q S + GTGLGL Sbjct: 1172 EVLLSISQLERVEDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLA 1231 Query: 780 LAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812 ++K +V+ G+ + S G+ + + D Sbjct: 1232 ISKQLVELMGGEIGVESQFGNGSTFFFSVRLKVAD 1266 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 42/373 (11%), Positives = 101/373 (27%), Gaps = 34/373 (9%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 +L L E F + K + Sbjct: 299 EFFRDFTALSLNLILLSILLLLTGYITSRRLTRPIEELEAGIVAFGAGETKRIAKPRGAA 358 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347 + + F ++ +A D N + +D F V G L + Sbjct: 359 SEIATLTDKFNEMAEVLEEREAALLDSRGNRFAKLIDGMSDKSFYCSVAPDGLLDQVSDG 418 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + ++ ++ +N I + DR + + H I+ Sbjct: 419 VEKVLGVAP-ELLKRKY--------QRMFSDNPINELNWQYMDRALLGENVPPHQIEMLD 469 Query: 408 E--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + + + + + ++LE+ + + Sbjct: 470 GFGKLRRLDVFMQPLLSDNQQLLSIEMLFNDVTEQFSAVAWS-------NAVLESAPEAM 522 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-- 523 I+ G ++ TN +LFGY + +L + + + ++ + Sbjct: 523 LIVEESGQLVFTNSRCQRLFGYDEQQMLAMSVDELVPEAVREQHADLRAQFVAEGQDRKM 582 Query: 524 TLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 L K + + I + T+ D++ +L A++I + Sbjct: 583 GLGKSLKARKSDGGEFPVEICLGLLPIADDGQRQVAATVRDMT------LELEIAQQIKD 636 Query: 580 KESSHKSDFLARV 592 ES + +A + Sbjct: 637 SESRFRG-LVANI 648 >gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 1263 Score = 405 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 134/789 (16%), Positives = 267/789 (33%), Gaps = 67/789 (8%) Query: 67 YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDI 124 + VF P V F W + + +S + + +G +++ G R D+ Sbjct: 6 QSEPGWEHVFFPGGPVVLFVWRPEPGWPVHYVSPNVEQILGYSPSEILAPGFRFSDLVHP 65 Query: 125 LHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + N+ + L R T Y + + D +P Y + G+ Sbjct: 66 DDMGAINDEVATFLARGETTYEQHYRLRTRSGDYRWFHDYT-VPEYDDQGKPRLISGY-- 122 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + ++ R K + +F L E+ + + + + Q + H ++ Sbjct: 123 ILDRTEEHRAREQLKERESRFRTLFELYPDATVLIDPESGLPVQFNRLAHEQLGYTAEEF 182 Query: 244 TEYYAHKDDVLK------TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + L+ + + +L L+ + Sbjct: 183 ARLRIPDYEALETPAETGAHIQAIFERGHDDFETRHRRKDGSLIDVRVSVVLLNLEGQTL 242 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356 + + S + + + + Y + + L Sbjct: 243 FLAVFRDITEEKAASRELERSRERLALATESAELGIWDYDMASGHLEWDDGMFRLYGIAP 302 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 D G A ++ + + R+ ++ + Sbjct: 303 AD----FGHSFEDWAAALTPESREAAVAAFQAAVSSDRPFDIRMVILRAADGAIRTLHGQ 358 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-----------------------EVMQ 453 + + G+ + + N+R + + + Sbjct: 359 AQIIRDGSGTPVRVVGVNRDVTEEEENRRHLAAFFAQSLSGFFFMMLDEPVDWQGADEEE 418 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 ++L+ +++ + I N+A+ +G D++ Sbjct: 419 KEALLD------YVMDHQ-RITMVNQAMLDQYGATERDLIGMTAREMFAH-DLEHGRFIW 470 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569 + + + + + L HD++E KQ++ Sbjct: 471 KGLFDQGRWHVETRE---QRLDGTPIIIDGDYICLYDEQGRVTGHFGVQHDVTERKQQQE 527 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A++ AE+ S KS+FLA +SHEIRTP+ A+IG S+++ N + Sbjct: 528 ALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL----NEEQRDQVRK 583 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +S ++L I+ND+LD SKIESG++ L L+E V + +L + + + Sbjct: 584 IHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVHAGGLELLYD 643 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRD 743 ++PR ++ D + QI +N+LSNA FT GG + + + VRD Sbjct: 644 IPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQATLRFHVRD 703 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ +L + +PF Q S R GTGLGL +++ +V+ G+ + S P KG+ Sbjct: 704 TGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEVESAPGKGST 763 Query: 804 --IEIIFPL 810 + PL Sbjct: 764 FSFTLTLPL 772 >gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 891 Score = 405 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 135/738 (18%), Positives = 249/738 (33%), Gaps = 46/738 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G L+ IS + K +G +M+G + + D G + K + Sbjct: 156 ADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHVEDADYMRVHGLFKETG---IMKRRVR 212 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--FSHLH 208 +G Y+ ++++ I R I + + F Sbjct: 213 HKDGH--YLWLEVSYRIIRDEQGRIK--RVLSIGRNITERQKSEENLAKAQRLAMFGSWD 268 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + +++ P + + + L E + Sbjct: 269 WDLVNNVMHFSKEFRSIFGYCVKPVETSIDAFMAAVHPEDTERMKQIITNVILKGIHEET 328 Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + L + + + H + E EN Sbjct: 329 FYRIVLPNGEQKVLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREMEQRLRESENRYRSLF 388 Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 P+ V G++ NPS LT Y + + G L+ A + + + Sbjct: 389 QHNPLGICAVNMEGHILSVNPSLEELTGYTKDELL----GADILIMASSEEQDKIKRHME 444 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L + I E + E + GI + Sbjct: 445 LA-KQGETQTYESEF--IHKEGER--LFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIA 499 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQN 504 ++E + IL A S+GI ++ EG + N A ++FG + + + + Sbjct: 500 QIEKLSNEHSLILNAVSEGIVGLSTEGHVRFMNPAAVEMFGVGSAKPLHGACIDMIRHAD 559 Query: 505 ----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 + + + +E+ K I L + + Sbjct: 560 EIGSHFPDEQSSILQAIRSGASYQVEEAVFWK-KGGSSFLASYRISPLMDNGERKGAVMV 618 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D + + ++ AK+ AE+ KS+FL+ +SHE+RTP+ IIG + ++ + Sbjct: 619 FVDRT----NEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL-- 672 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + Y + I S ++ I+N++LD+SKIE+GKM+L E LD V L + Sbjct: 673 --DEEQRSYIDIITSSSGALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMM 730 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I ++ +P ++ D ++Q+ +N++SNAI FT G ++ I + Sbjct: 731 QAMEKGIELKWHVDQEMPGMLVGDHVRIRQVLVNLVSNAIKFTERG-RVNIFVERKAYSR 789 Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V DTG+G+ +PF Q+ + + GTGLGL + K +V G Sbjct: 790 HKNRCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGG 849 Query: 791 KFYIFSTPAKGTLIEIIF 808 + S A+G Sbjct: 850 SIGVDSDEARGATFRFQL 867 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 56/521 (10%), Positives = 147/521 (28%), Gaps = 28/521 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWYGKT 147 G ++ K +G +++ +R + D L + + Sbjct: 28 EGKCLYVNPAFCKMVGYEQEELLDIRYYHLLYKEAQDQRGLREAYAGWLQATDQVYKTEL 87 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L GT++++ ++L I+ + D + + + + Sbjct: 88 RLKHKRGTSVWLSLELT---IFDDEATEQSYL-IAYAMDITEKKDMEQVLSDNEDLYMLI 143 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E S + + + + H +D + L Sbjct: 144 TENTPDVISYSTADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHVEDADYMRVHGLFKE 203 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + +++ LS + + +E Sbjct: 204 TGI---MKRRVRHKDGHYLWLEVSYRIIRDEQGRIKRVLSIGRNITERQKSEENLAKAQR 260 Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + N+ + + F + Y + + A D +K Sbjct: 261 L---AMFGSWDWDLVNNVMHFSKEFRSIFGYCVKPV---ETSIDAFMAAVHPEDTERMKQ 314 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + I + N E + + E + + G+ + + R Sbjct: 315 I-ITNVILKGIHEETFYRIVLPNGEQKVLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREM 373 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++++ + S+ + GI +N EG ILS N ++ +L GY +++L + Sbjct: 374 EQRLRESENRYRSLFQHNPLGICAVNMEGHILSVNPSLEELTGYTKDELLGADILIMASS 433 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS 562 + ++ + QT E + E + + I + + +++ Sbjct: 434 EEQDKIKRHME-LAKQGETQTYESEFIHKEGERLFIKMTNIPIFVQEEIVGCYGIIENVT 492 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE----IRTP 599 K ++ + S+ + +S E P Sbjct: 493 PLKNYIAQIEKLSNEHSLILNAVSEGIVGLSTEGHVRFMNP 533 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 59/418 (14%), Positives = 126/418 (30%), Gaps = 55/418 (13%) Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 L + P + S G Y NP+F + Y+ + ++I L Sbjct: 3 SAARRLPLLEHMYNHAPTGIVILSKEGKCLYVNPAFCKMVGYEQEELLDIRY-YHLLYKE 61 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + ++ RL + S+ ++ ++ E Sbjct: 62 AQDQRGLREAYAGWLQATDQVYKTELRLKHKR---GTSVWLSLELTIFDDEATEQSYLIA 118 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + ++ + I E T D I+ +GI+ + +V KL GY +++ Sbjct: 119 YAMDITEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEM 178 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L K F M + ++T K+ L L + + + Sbjct: 179 LGKKRLQFYHVEDADYMR------VHGLFKETGIMKRRVRHKDGHYLWLEVSYRIIRDEQ 232 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH---EIRTPLTAIIG 605 +I+E ++ + L+ A+++A S D + V H E R +I G Sbjct: 233 GRIKRVLSIGRNITERQKSEENLAKAQRLAMFGSWDW-DLVNNVMHFSKEFR----SIFG 287 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYID-RSGNLVLDIVNDLL-------DISKI------- 650 + + + + I+ +++ +I Sbjct: 288 YCVKPVETSIDA--------FMAAVHPEDTERMKQIITNVILKGIHEETFYRIVLPNGEQ 339 Query: 651 -------ESGKMNLHFEPVSLDEAVSEAIS--LVQLYANEKRILIRTSFANNIPRILA 699 E+ +PV + + + ++ E R+ F +N I A Sbjct: 340 KVLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREMEQRLRESENRYRSLFQHNPLGICA 397 >gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72] gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72] Length = 1682 Score = 405 bits (1042), Expect = e-110, Method: Composition-based stats. Identities = 130/750 (17%), Positives = 263/750 (35%), Gaps = 54/750 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D E++ + +G +M+GM L DV L DL++ Q + Sbjct: 433 RAD-DLNYVEVNAAACRLLGYSREEMLGMNLRDVQGRLTPAAFQARIDLVREQGGARFEN 491 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G L V +D+ + + I A + L S Sbjct: 492 RRRCKDGRLLDVTVDVTIIRQDGVD------YLVDIWSDVTAQKAAEAEIRML----SMA 541 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + ++ + + + Sbjct: 542 VDQSPNTVLITDLDANTVYVNDAFSRNNGYTREEILGQNPRLLMSGKTPRATYEAMWRAL 601 Query: 266 ESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + P + +F N N+ K L+++ Y++ + +E Sbjct: 602 GAGEPWKGEFINRRKNGNERIKAVTIVPLRDDDGCVCNYVAVMEDITERRRIEEQLRKLS 661 Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 VD+ P + + Y N +F+ T + + + + GL+ + + + Sbjct: 662 LAVDQSPEAIVITDLDARIEYVNQAFVHQTGFSAEEAL----GLNPAVLKSGRTPEATYR 717 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + I+ + + + Sbjct: 718 EMWARLVQGESWQGELYN---RRKDGSEYVELANITPVRQPDGAVTHYLAIKEDITEKKR 774 Query: 443 NKRKMEIEVMQL------------------CSILEATSDGIAIINREGIILSTNRAVSKL 484 ++E +L +I + + GIA+I ++ +++ NR + + Sbjct: 775 TAEELEAYRTRLEQLVASRTEALRLASEHQQAIFDTATSGIALI-KDRVLIRCNRRLHDI 833 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 FG+P +++ K ++ + + L E+ + L Sbjct: 834 FGWPDGEMVGKSTAIWYVDEASYALGGDAVYNRLWQGEAVCREQELMRRDGSLFWARLTG 893 Query: 544 IIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + S + DI+ ++ + +A+K+AE + K++FLA +SHEIRTP+ A Sbjct: 894 KAVDIHDRSKGTVWVIDDITTEREAFQTVRNAQKLAEDAARAKANFLANMSHEIRTPMNA 953 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG + ++ N + +Y I S +L I+ND+LD+SKIE+GKM + Sbjct: 954 VIGMTHLVLNTDLTR----QQRDYLKKIQGSSQHLLGIINDILDLSKIEAGKMAVEHIEF 1009 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 LD + L+ A K + + +PR ++ D + Q+ +N +NA+ FT Sbjct: 1010 DLDTVLENVTGLISEKATGKGLELIIDVGKTVPRSLVGDPLRLGQVLINYANNAVKFTER 1069 Query: 722 GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G I+I E + V DTG+G+ ++ + + F Q NS + GTGLG Sbjct: 1070 GS-IVIRCDLAETAERDVVLRFSVTDTGIGIEAEQIPRLFQTFEQADNSTTRKYGGTGLG 1128 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 L +++ + G+ + S KG+ Sbjct: 1129 LAISRELAHMMGGEAGVDSEYGKGSTFWFT 1158 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 118/463 (25%), Gaps = 32/463 (6%) Query: 148 TLWPIEGTNLYVPIDLAAL-PIYSRNREF----------SGFRGFGIVHVNRVDNDPRAL 196 + ++G + + +A L P+ + E + G R Sbjct: 354 LILEVDGAGRRLRLGIAYLQPLPAEAGEPFLAEERSLVEAAALRIGSALQRRRILATERD 413 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + L K + Y + + + ++ + Sbjct: 414 TQALLKAVVAEAPYAIELIRADDLNYVEVNAAACRLLGYSREEMLGMNLRDVQGRLTPAA 473 Query: 257 EKYP-LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + L E+ + + ++ + + + + + Sbjct: 474 FQARIDLVREQGGARFENRRRCKDGRLLDVTVDVTIIRQDGVDY--LVDIWSDVTAQKAA 531 Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + VD+ P + N Y N +F Y + + L Sbjct: 532 EAEIRMLSMAVDQSPNTVLITDLDANTVYVNDAFSRNNGYTREEILGQNP----RLLMSG 587 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + N + + Sbjct: 588 KTPRATYEAMWRALGAGEPWKGE---FINRRKNGNERIKAVTIVPLRDDDGCVCNYVAVM 644 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + R + ++ +L ++ + + I I + + I N+A G+ E+ L Sbjct: 645 EDITERRRIEEQLR----KLSLAVDQSPEAIVITDLDARIEYVNQAFVHQTGFSAEEALG 700 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 V TP + L ++ + K+ I + Sbjct: 701 LNPAVLKSGRTPEATYREMWARLVQG--ESWQGELYNRRKDGSEYVELANITPVRQPDGA 758 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 Y DI+E K+ +L + E+ + +++ L S Sbjct: 759 VTHYLAIKEDITEKKRTAEELEAYRTRLEQLVASRTEALRLAS 801 >gi|283852097|ref|ZP_06369371.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572487|gb|EFC20473.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1340 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 135/815 (16%), Positives = 274/815 (33%), Gaps = 73/815 (8%) Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 + + T L +E D + ++ + +D G ++ L + +G + Sbjct: 261 AEAETARLGAEAARYRDLYDQAMQGLFRLDPAGRPLAVNTPLARLLGYRDVADCLRQAGQ 320 Query: 121 VSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 S L +D + L R + + + +G+ + L + Sbjct: 321 ASHPLRLDAPGRRDVLLAALARPDAVAFEVGSYRPDGSITRLRCVLRC--VRDARGCPVA 378 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 G + + A H E+ + + + + Sbjct: 379 LEGACADFPAALPDGRPAHEIEYRSIVEHQTELICRRDAAGRLTFANPAFARYWSRTPEA 438 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 +D + + L + + + ++ L + S Sbjct: 439 CVAEDFRPGIPEEDAAVVARRVASLGPARPTTGFEHRVVRADGRIRWQRWTCRALFDASG 498 Query: 298 ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLT 352 EY + ++ ++ P+P F G N +F L Sbjct: 499 AVAEYQFVGRDVTARKLVEQRLHTQAGHALAMLEALPLPVFHKGRDGRYTGCNQAFETLL 558 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + L L S A++ +L + R A L S+A Sbjct: 559 GLPRARIVGQT--LGDLCGTDNASPYEALESELLAKGHRQVYEARLSLPA----GWRSMA 612 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------------------------- 446 + A E G+ + + R+ + Sbjct: 613 IHKAVVRDAGAGGEATGIIGVALDVTERRLAEAAATKVRDGLEAETLQLGAELGRVRARL 672 Query: 447 -------------MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + E L ++L + DGI++++ + +++ NRA+ L+ + + Sbjct: 673 AAEVLERERVGERLRHEARFLETVLSSIQDGISVLSPDLTVVTVNRAMRALY-IDSNEPV 731 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + + + ++ G E L L + Sbjct: 732 GRKCHEVYQGLGMPCQDCPSLRAMASGKLAMSLVKRCGLGGETGWLELFCFPLFDDGGAV 791 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + D++ K+ + +L+ A + AE S K FLA +SHEIRTPL A++G+ +++ Sbjct: 792 TGVVEIVRDVTAGKKLEAELAAALERAEAGSQAKGAFLANMSHEIRTPLNAVLGYVQLML 851 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 R P R E ++ S +L ++ND+LD SKIE+G+M L E L ++ Sbjct: 852 RDRLEP----RQRERLAVVEESAATLLSLINDILDYSKIEAGRMELKNESFDLPACLAAV 907 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIIS- 728 + ++ A K + + + +PR + D ++Q+ N+LSNA+ +T +G + +S Sbjct: 908 VKEQEVLARNKGLDLTLAMGPEVPRDVRGDGLRLRQVLRNLLSNAVKYTEAGSVAVTVSR 967 Query: 729 -------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + V DTGVG+ + F Q+ + R GTGLGL + Sbjct: 968 TGELPGPAGEAPRQILRFAVADTGVGIAEEQQAAIFDSFTQVDDGLTRRQAGTGLGLAIC 1027 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + G ++ S P +G++ + P ++ + P Sbjct: 1028 RRLAGLMGGGVFVESVPGRGSVFWLECP-FEVAEP 1061 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 32/374 (8%), Positives = 95/374 (25%), Gaps = 7/374 (1%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + R+ + P A L + + + E + + + Sbjct: 4 LCETRLRDLPPATPLTLGLWTTAVQAAGILCQAGVAEALVLDGGRPLGVVTVRSVARVLV 63 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + ++ P+ S+E+ + H + T + + + Sbjct: 64 RDPDRAAQLAVRDFMDPVAVSQETDVLPSALRHLLAAPSRRLAVVDATGRAVGLLTPLLV 123 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + TV P+P + G + A +++ + Sbjct: 124 ARLGQGVDGLSGRTVASAMVRTVVTARAGEPLPLVL---GRMVRAGVGGVVVAEADRPLG 180 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + A + L+ + ++ VM + S + + + Sbjct: 181 LVTATDAAALMAGGRDIRRCPVEAVMRAPVEAVSPQLSLAEAVGGMDGAGAGRLAVTDAA 240 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + ++ E + + + G+ ++ G L+ N Sbjct: 241 GFLLGVLTATDVATALHLLLAEAETARLGAEAARYRDLYDQAMQGLFRLDPAGRPLAVNT 300 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++L GY + + +L + + + Sbjct: 301 PLARLLGYRDVADCLRQAGQASHPLRLDAPGRRDVLLAALARPDAVAFEVGSYRPDGSIT 360 Query: 540 SLRIIIKKLPFSSC 553 LR +++ + + Sbjct: 361 RLRCVLRCVRDARG 374 >gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1391 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 122/791 (15%), Positives = 257/791 (32%), Gaps = 56/791 (7%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHG-YLKEISEELPKTIGNYAFKMIGMR--LCDVSDI 124 SE F W D + +S + G ++ D Sbjct: 462 AQSEAQFRLLTEHLPETVFWVTDPQTERILYVSPAYERLWGQPRDRLYSHHQSWLDGIHP 521 Query: 125 LHIDPNNHIGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 P + + ++ + + +G +V A+P + E +R G+ Sbjct: 522 QD-RPRIQTAYAAQTRTGSYDEEYRILHPDGRLAWVRDRRFAIP--NATGEV--YRLVGL 576 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMK 237 ++ + KF L EI ++ + ++ Sbjct: 577 TENITARKRSEIDLRQSEAKFRRLVEISMFGVAIGDFSGRMTYANDALLKMIGYSREELE 636 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT----KKQYFGTLQ 293 + + L + L S P ++++ + ++ Sbjct: 637 AGQIRWIDLTPPEHLPLDWQAGEELRQFGVSTPFEKEYMHKDGHRVPILIGGALLGEPYV 696 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLT 352 + YL V+ P+ + + + + + Sbjct: 697 DQELIIAFYLDLSGIKQTEHQLRAALQQLNSHVENTPMAVIEWDAHFIVRRWSGAAPHIF 756 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + + + L+ D + V + + + Sbjct: 757 GWPAEEVLGRCINELNLVYE---EDLAKVTNVCDRILSGAEPQIISHNRNYKKDGSVLHC 813 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + + + + + + + + + A + + N Sbjct: 814 VWYNSTLT-DPMGQVTSILSLVLDRTEQVRAEESLRQSEERFRLAARAVTGMVYDWNVAT 872 Query: 473 IILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 + + + L G E++ + ++ + + + I++ + + Sbjct: 873 QEVYRSEGLYSLIGVHPEEVPPTQAWWSEQIHPEDLVHLYPQMQVIMA-GQGDSYDFEYR 931 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH-------AKKIAE 579 ++ ++ + S + + DI+ KQ + + H A++ AE Sbjct: 932 VRHRDGHWVNFWDRGYLIRNSQGQVIRVVGSSTDITLRKQLEQQREHLLIQEQTAREQAE 991 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + K +FLA +SHE+RTPL I+G+ ++++ + F P R +E I+R+ L + Sbjct: 992 LANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFEP---ARAMEALRTIERNAQLQVQ 1048 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ DLLD SKI GK+ L PV L ++ A+ V+L A K I ++T + + Sbjct: 1049 LIEDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVRLAAEAKTIQLQTCLDQHPILVWG 1108 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------------EEVILRVRDTG 745 D ++Q+ N+LSNAI FTP GGQ+ + + V DTG Sbjct: 1109 DANRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSPGKRAHPMPVNTSSYAQICVIDTG 1168 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLI 804 G+ + L F Q + R G GLGL + K +V+ + G+ + S +G Sbjct: 1169 KGIASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVKQIVEMHGGRIWAESPGLGEGATF 1228 Query: 805 EIIFPLYDTSH 815 + PL Sbjct: 1229 TVRLPLMKEEQ 1239 Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats. Identities = 61/525 (11%), Positives = 143/525 (27%), Gaps = 29/525 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 + G+ + + G A G + D L++ + Sbjct: 352 LLFTTLPDGWSDYCNSHFYQFTGMTADAARGWGWMTAVYPEDRERLRENWLDALRQGKPF 411 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 K L +G Y ++PI + S + G+ + + + + + Sbjct: 412 AMKYRLRRADGE--YRWFLGRSIPIQEETGQIS--QWLGLWTEIHELKETQIALAQSEAQ 467 Query: 204 FSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKT 256 F L E V + + SP L ++ H D + Sbjct: 468 FRLLTEHLPETVFWVTDPQTERILYVSPAYERLWGQPRDRLYSHHQSWLDGIHPQDRPRI 527 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLS 312 + + S E+ + + + N + E + + Sbjct: 528 QTAYAAQTRTGSYDEEYRILHPDGRLAWVRDRRFAIPNATGEVYRLVGLTENITARKRSE 587 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + E V+ + G + YAN + L + Y + AG + + Sbjct: 588 IDLRQSEAKFRRLVEISMFGVAIGDFSGRMTYANDALLKMIGYSREEL--EAGQIRWIDL 645 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P + R + + + + + Sbjct: 646 TPPEHLPLDWQAGEELRQFGVSTPFEKEY--MHKDGHRVPILIGGALLGEPYVDQEL-II 702 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + ++ + QL S +E T + + I+ + A +FG+P E+ Sbjct: 703 AFYLDLSGIKQTEHQLRAALQQLNSHVENTPMAVIEWDAHFIVRRWSGAAPHIFGWPAEE 762 Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +L + + + + + + ILS Q + K+ +L L Sbjct: 763 VLGRCINELNLVYEEDLAKVTNVCDRILSGAEPQIISH-NRNYKKDGSVLHCVWYNSTLT 821 Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + D +E + + L +++ + + + Sbjct: 822 DPMGQVTSILSLVLDRTEQVRAEESLRQSEERFRLAARAVTGMVY 866 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 52/449 (11%), Positives = 115/449 (25%), Gaps = 37/449 (8%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V + A R + L + + Q +T Sbjct: 330 QVITALQESEARYHRRCEAVPGLLFTT--LPDGWSDYCNSHFYQFTGMTADAARGWGWMT 387 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 Y + L+ L + + + +Q + + ++L Sbjct: 388 AVYPEDRERLRENWLDALRQGKP-FAMKYRLRRADGEYRWFLGRSIPIQEETGQISQWLG 446 Query: 305 HRNHPSLSAYFD----EGENLTPETVDKCPIPF-FVYS--HGNLFYANPSFLLLTKYKSV 357 + E + P +V + Y +P++ L Sbjct: 447 LWTEIHELKETQIALAQSEAQFRLLTEHLPETVFWVTDPQTERILYVSPAYERLWGQPRD 506 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + Y + + + + + + Sbjct: 507 RLYSHHQSWL-----DGIHPQDRPRIQTAYAAQTRTGSYDEEYRILHPDGRLA-WVRDRR 560 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 F N E G+ + ++ + + ++E + G+AI + G + Sbjct: 561 FAIPNATGEVYRLVGLTENITARKRSEIDLRQSEAKFRRLVEISMFGVAIGDFSGRMTYA 620 Query: 478 NRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A+ K+ GY E++ + E+ + EK + K+ Sbjct: 621 NDALLKMIGYSREELEAGQIRWIDLTPPEHLPLDWQAGEELRQFGVSTPFEKEYM--HKD 678 Query: 536 EKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + I L D+S KQ +++L A + Sbjct: 679 GHRVPILIGGALLGEPYVDQELIIAFYLDLSGIKQTEHQLRAALQQLN------------ 726 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 SH TP+ I + I + G + Sbjct: 727 -SHVENTPMAVIEWDAHFIVRRWSGAAPH 754 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 12/169 (7%), Positives = 38/169 (22%), Gaps = 6/169 (3%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + E ++ + EA + +G N Sbjct: 311 AMGQAELYGQLRGELARQHQVITALQESEARYHRRCEAVPGLLFTTLPDGWSDYCNSHFY 370 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 + G + + + + + L + + Sbjct: 371 QFTGMTADAARGWGWMTAVYPEDRERLRENWLDALRQGKP--FAMKYRLRRADGEYRWFL 428 Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + +I E K+ + L+ ++ + H + Sbjct: 429 GRSIPIQEETGQISQWLGLWTEIHELKETQIALAQSEAQFRLLTEHLPE 477 Score = 44.2 bits (103), Expect = 0.083, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVM 509 L + T+ G+ + +G I + N A + G+ + + + + Sbjct: 26 LWAATATTAVGMILQRSDGSIQACNAAAESILGFTFAQMRGCHYIDCPWQTIHADGSPFP 85 Query: 510 NHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISE 563 +L+L Q + +G L+ L+I + L T +I++ Sbjct: 86 GTAHPAMLALQTGQPVTGEIMGIYQPNGDLVWLQIDAQPLFQGPGSAPWGVVTTFVEITQ 145 >gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 940 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 133/761 (17%), Positives = 242/761 (31%), Gaps = 52/761 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D ++ ++ + G + + G R D + D R T G + Sbjct: 25 LDPDRIIRFLNPSAERLTGWSSQDVAGRRGDDFFHLDETDAAGLSAH-CGRIVTPEGTSL 83 Query: 149 LWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------ND 192 ++ L + L A+P+ E G Sbjct: 84 SLCVQAHGLASNGERADAFLVVLKAVPV----GEHGSPSCHGACRRLTAAYSSLLEQYRQ 139 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTE---YY 247 + ++ +++F + + + Q + Y Sbjct: 140 LKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVSPQIHSILGVAPEALIGTPVWQYVY 199 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYL 303 + + + + + + N L Sbjct: 200 PDDVERFLNIFRQAAAENKLVRNLEYRRRSASGELRWLSANGVPVFNEQGTLIGFRGATL 259 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362 + A + E V V G + N + + + Sbjct: 260 DITKQKAAEAALRDSEEHYRSIVTAIAEGMVVQERDGRIVSFNRKAEAILGLTADQLMGR 319 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-A 421 + + S RT + + + Sbjct: 320 TSCDPRWRAVREDGSPFPGEEHPAMVSLRTGKPCHNVVMGVYKPNGEMCWILVNAEPLFR 379 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRA 480 E + + R ++ + QL ++ + + + + +L + A Sbjct: 380 PGESEPFRVVATFTDITERRRIEQTLLETREQLKNLFNSLNIVFWSYDVTQRRLLQLSPA 439 Query: 481 VSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 LFG P + P T + + +L ++ L Sbjct: 440 CEGLFGVPAQAFFDHPDTWMQATHPDDLPRLRRISKRVLVGKA---IQDEFRIIRNNGDL 496 Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + + SS + + DI+E KQ +L AK AE+ S KS FLA +SH Sbjct: 497 RWVSGHVIPVADSSGKVVRLDGMLMDITEKKQVDMELRIAKVRAEEASLAKSSFLAMMSH 556 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ IIG +E++ R ++YA + S L+L ++ND+LD SK+E+GK Sbjct: 557 EIRTPMNGIIGMNELLLGTRLTS----EQLDYAQAVQESAELLLTVINDILDYSKVEAGK 612 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713 M L V L+Q A EK + I T A+ + D ++Q+ LN++S Sbjct: 613 MELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLFQGDPGRLRQVLLNLVS 672 Query: 714 NAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G I I S+ + V DTG+G+ + +PF Q S Sbjct: 673 NAVKFTERG-TIDIRVFPVSDTGSQVTIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTR 731 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL +++ +V+ GK + S P +G+ P+ Sbjct: 732 KYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFTLPV 772 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 39/387 (10%), Positives = 98/387 (25%), Gaps = 26/387 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + W +D G +S ++ +G +IG + ++ +I +N Sbjct: 161 YIWELDGEGRYAYVSPQIHSILGVAPEALIGTPVWQYVYPDDVERFLNIFRQAAAENKLV 220 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +P+++ GFRG + A + ++ + Sbjct: 221 RNLEYRRRSASGELRWLSANGVPVFNEQGTLIGFRGATL--DITKQKAAEAALRDSEEHY 278 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + V++ I S L + + ++ + P Sbjct: 279 RSIVTAIAEGMVVQERDGRIVSFNRKAEAILGLTADQLMGRTSCDPRWRAVREDGSPFPG 338 Query: 264 SEESSLPEQEDF----------HTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNH 308 E ++ + N L + + Sbjct: 339 EEHPAMVSLRTGKPCHNVVMGVYKPNGEMCWILVNAEPLFRPGESEPFRVVATFTDITER 398 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + E + I F+ Y L +P+ L + + Sbjct: 399 RRIEQTLLETREQLKNLFNSLNIVFWSYDVTQRRLLQLSPACEGLFGVPAQAFFDHPDTW 458 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L I +L A I N + ++ A+ + Sbjct: 459 MQATHPDDLPRLRRISKRVLVGK------AIQDEFRIIRNNGDLRWVSGHVIPVADSSGK 512 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + +G+ + + + ++ I ++ Sbjct: 513 VVRLDGMLMDITEKKQVDMELRIAKVR 539 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 83/276 (30%), Gaps = 15/276 (5%) Query: 325 TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V + P+P V + + NPS LT + S D+ G + + Sbjct: 14 LVRQFPLPLAVLDPDRIIRFLNPSAERLTGWSS-QDVAGRRGDDFFHLDETDAAGLSAHC 72 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--- 440 + + T ++ + H + N E + A + + +G Sbjct: 73 GRIVTPEGTSLSLCVQAHGLASNGERADAFLVVLKAVPVGEHGSPSCHGACRRLTAAYSS 132 Query: 441 -----RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 R K ++ + + A + I ++ EG + + + G E ++ Sbjct: 133 LLEQYRQLKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVSPQIHSILGVAPEALIGT 192 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P ++ + + + + + + +L L + Sbjct: 193 PVWQYVYPDDVERFLNIFRQAAAENKL-VRNLEYRRRSASGELRWLSANGVPVFNEQGTL 251 Query: 556 LTMH----DISEWKQEKNKLSHAKKIAEKESSHKSD 587 + DI++ K + L +++ + ++ Sbjct: 252 IGFRGATLDITKQKAAEAALRDSEEHYRSIVTAIAE 287 Score = 46.2 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 80/234 (34%), Gaps = 32/234 (13%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPS 507 S++ +A+++ + II N + +L G+ +D+ + F + + Sbjct: 7 SSETFLSLVRQFPLPLAVLDPDRIIRFLNPSAERLTGWSSQDVAGRRGDDFFHLDETDAA 66 Query: 508 VMNHYLTEILSLDLRQT------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 ++ + I++ + + G + L+ L+ + S + Sbjct: 67 GLSAHCGRIVTPEGTSLSLCVQAHGLASNGERADAFLVVLKAVPVGEHGSPSCHGACRRL 126 Query: 562 S--------EWKQEKNKLSHAKKIAEKESSHKSDFL---------ARVSHEIRTP-LTAI 603 + +++Q K +L ++ +++ A VS P + +I Sbjct: 127 TAAYSSLLEQYRQLKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVS-----PQIHSI 181 Query: 604 IGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 +G + E + P +E I R +V +L + SG++ Sbjct: 182 LGVAPEALIGTPVWQYVYPDDVERFLNIFRQAAAENKLVRNLEYRRRSASGELR 235 >gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37] gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory domains [Psychromonas ingrahamii 37] Length = 1255 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 113/522 (21%), Positives = 215/522 (41%), Gaps = 15/522 (2%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKS 356 S + ++ + +D + ++ + N + + Y+ Sbjct: 333 VSGRERAINTARYINKELSIERQRLSDIIDATNSGTWQWNIQTGEAFFNDHWPRVLGYEL 392 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + P+ + + + + + Sbjct: 393 SELGPTSFETWLKFIHPEDKELSIKR--LQKHLSGELDYYEYETRMRHKKGGWVWVLARG 450 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + G + + +++ + +IL DGI IN GI+ S Sbjct: 451 KVTTWTADGKPLLMCGTHQDITKQKFATEQLQDSAALIEAILNTVVDGIITINEYGIVES 510 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTK 534 N A +FGY +++ T+ + ++ S + Y+ + +++I G K Sbjct: 511 INPAAEHIFGYSATEVIGHNITMLMPESYRSQHDGYIEHFNITGEAKIVGIDRIIEGKRK 570 Query: 535 EEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + L ++ + DI+E K+ K L AK AEK + KS FLA + Sbjct: 571 NGSIFPMELGVSKVLLGEKKLFASVVRDITEQKRAKQALISAKTEAEKANLAKSQFLAAM 630 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ +IG +V++ ++ + I S +L I+ D+LD SKIE+ Sbjct: 631 SHEIRTPMNGVIGMVDVLQQSSLKGF----QVDMVDTIRDSAFSLLSIIEDILDFSKIEA 686 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711 GK+++ + P+++ E V +A ++ A +K++ + IP I L D ++QI +N+ Sbjct: 687 GKLDIEYAPMAVAEVVEKACFMLAHLAEKKKVELTLFTDPAIPDITLGDANRLRQIVVNL 746 Query: 712 LSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +NAI F+ G++ + T + +RV D G+GM L K PF Q + Sbjct: 747 TNNAIKFSSGSDRPGRVSVQALMTDPTMLEIRVIDNGIGMNESALSKLFMPFYQADVTTT 806 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLG+ +A+ +V G+ + ST KG++ + PL Sbjct: 807 RRFGGTGLGITIARNLVQLMGGEITVQSTLNKGSIFSVHLPL 848 >gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella piezotolerans WP3] Length = 1771 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 131/783 (16%), Positives = 281/783 (35%), Gaps = 53/783 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G L + G +M+ M + Sbjct: 507 FNDVTEQFSAAAWSNAVLESAPEAMLIV---DESGRLVFTNSRCQLLFGYDEAQMLAMSV 563 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTT-------LWPIEGTNLYVPIDLAALPIYSR 171 + + + + + +G V I L LP+ Sbjct: 564 DQLVPDSIRSHHASLREKFVSEGRDRKMGLGMTSDLMALNADGCEFPVEISLGLLPV-DA 622 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--------EIKKGHSSVEKEKYD 223 + + + V + K + +F L + + + + D Sbjct: 623 DGQ---RQVAATVRDMTEELKIAQRIKDSENRFRGLVTNIPGAVYRTRIEDTWIMEYVSD 679 Query: 224 IFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 + P ++N S +D + + +E+ S Q + + Sbjct: 680 NIGDITGYPAADFIENSKRSFASLIIEEDLAIASHAIETALAEQRSFEVQYRIQHRDASI 739 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFF---- 334 + + + + + + + N ++S E + + P + Sbjct: 740 HWVHEKGKAIYDENGVALWFDGSINDITISKAAQEKIAQSQQQLETITESIPSTVYQLHW 799 Query: 335 -VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 N + + + + + IE ++ + + + I+ + S Sbjct: 800 RSNRDRNFTFLSSACIATLGFHRDQVIEKFDLVAECIINDE--RTHIIEALSGVSSSGLN 857 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + + + +++ NG + + + +++ Sbjct: 858 WTEE---FRYRHPMGDIRWLQA-GAHGNQLADDSIIWNGYLMDITERKQIDKELAKREAH 913 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 ++ + GI ++ G+IL N S+ +++ F + ++ Sbjct: 914 FRALFDNAGIGIVNVDERGLILDCNEQFSQYVQLSSDELNGSSFFDYQHRDDQQTAKQLF 973 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 ++++ D + ++ ++ + + + L L+M +I+ KQ N Sbjct: 974 SQLMGNDDSS-MTAEIRLLSQSGDVMWMDLTLTGLQDKHGTLNSAVLSMANITSLKQISN 1032 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK A+ S KSDFLA +SHEIRTP+ AIIG S++ + + Y Sbjct: 1033 ELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQQNYVQK 1088 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 IDR+ +L I+ND+LD SKIE+GK+++ L+ + + + + A +K++ + + Sbjct: 1089 IDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFA 1148 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744 A NIP ++ D + Q+ +N+++NA+ FT G ++++S + VRD Sbjct: 1149 VAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQG-EVLLSISQLERVDDAITLRFSVRDN 1207 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+T + K K F Q S + GTGLGL + K +V+ G+ + S G+ Sbjct: 1208 GIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTF 1267 Query: 805 EII 807 Sbjct: 1268 FFT 1270 Score = 110 bits (276), Expect = 9e-22, Method: Composition-based stats. Identities = 64/516 (12%), Positives = 159/516 (30%), Gaps = 29/516 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 F +I+ G + ++SE + K +G A +++ + + I+ N + D L+ +N Sbjct: 411 FYCSIEPDGQIAQVSEGVEKVLGVSA-ELLKRKYQRMFSDNAINEKNWHYMDDALQGRNV 469 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199 + + +G + + + P+ S N+E + + A Sbjct: 470 PPHQVEMLDSKGKLRRLDVFM--QPLLSDNQELLSVE--MLFNDVTEQFSAAAWSNAVLE 525 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + +F +++ + H K Sbjct: 526 SAPEAMLIVDESGRLVFTNSRCQLLFGYDEAQMLAMSVDQLVPDSIRSHHASLREKFVSE 585 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG- 318 + + ++ + G L ++ + + + + Sbjct: 586 GRDRKMGLGMTSDLMALNADGCEFPVEISLGLLPVDADGQRQVAATVRDMTEELKIAQRI 645 Query: 319 ---ENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 EN V P + + + Y + + +T Y + D IE + L Sbjct: 646 KDSENRFRGLVTNIPGAVYRTRIEDTWIMEYVSDNIGDITGYPAADFIENSKRSFASLI- 704 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + A + +++ R IQ + + ++ + +G Sbjct: 705 IEEDLAIASHAIETALAEQRSFEVQYR---IQHRDASIHWVHEKGKAIYDENGVALWFDG 761 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYP 488 + ++ + K+ QL +I E+ + + NR+ + A G+ Sbjct: 762 SINDITISKAAQEKIAQSQQQLETITESIPSTVYQLHWRSNRDRNFTFLSSACIATLGFH 821 Query: 489 VEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + ++ K + + + + L+ + S L T E + + L Sbjct: 822 RDQVIEKFDLVAECIINDERTHIIEALSGVSSSGLNWTEEFRYRHPMGDIRWLQAGAHGN 881 Query: 547 KLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKE 581 +L S + DI+E KQ +L+ ++ + Sbjct: 882 QLADDSIIWNGYLMDITERKQIDKELA-KREAHFRA 916 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 4/152 (2%) Query: 440 TRINKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ + +++ SD I +G I + V K+ G E + RK Sbjct: 385 EEREQALLDSRGNRFAKLIDGMSDKSFYCSIEPDGQIAQVSEGVEKVLGVSAELLKRKYQ 444 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556 +F + HY+ + L + L S + + L + + S+ Sbjct: 445 RMFSDNAINEKNWHYMDDALQGRNVPPHQVEMLDSKGKLRRLDVFMQPLLSDNQELLSVE 504 Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 +D++E + + A + + Sbjct: 505 MLFNDVTEQFSAAAWSNAVLESAPEAMLIVDE 536 >gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 605 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 112/519 (21%), Positives = 228/519 (43%), Gaps = 19/519 (3%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 P + E E + + + + S+G + + + + Sbjct: 4 TDPHILLKLTEAEQRFRDVTEAAGEYIWELDSNGLYTFVTKPIETILGVPAEQALGRTP- 62 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 D + + +R H + + + + Sbjct: 63 ----FDFMPPEEAEWVGAWFTKLVERRE-PFRGLEHCSLKSDGSIVWQRVSGVPILDGAG 117 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E G + ++ ++ +E +L IL+ T +G I+ E +LS N++ K+F Sbjct: 118 ELRGYRGAALDITQEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIF 177 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543 GY +++L + + + S + Y++ L+ +++ + + G K ++ L++ Sbjct: 178 GYRADEVLGRNVKMLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQL 237 Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + + ++ DI+E K+++ AK+ AE + KS+FLA +SHE+RTP+ Sbjct: 238 AVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMN 297 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG ++ P P+ +Y I S +L ++ND LD++++E+GKM + P Sbjct: 298 VIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQIP 355 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 L + +++ L+ A EK + + + A +P +++ D + Q+ +N+ SNAI F+ Sbjct: 356 FDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSD 415 Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G ++ ++ + + + VRDTG+G+ +LE ++PF Q S + +GTGL Sbjct: 416 KG-EVSLNFEMADSTADTLTLRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDGTGL 474 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GL +A +V GK + S P +G+ PL + Sbjct: 475 GLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQ 513 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 25/254 (9%), Positives = 72/254 (28%), Gaps = 12/254 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143 + W +D++G +++ + +G A + +G D + L++R+ + Sbjct: 29 YIWELDSNGLYTFVTKPIETILGVPAEQALGRTPFDFMPPEEAEWVGAWFTKLVERREPF 88 Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G +G+ V ++ +PI E G+RG + + R + +K Sbjct: 89 RGLEHCSLKSDGSI--VWQRVSGVPILDGAGELRGYRGAAL--DITQEKLARQALEEREK 144 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS---LTEYYAHKDDVLKT 256 + + + + + + S R + + + + Sbjct: 145 RLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVKMLMPDPYHSGHDQY 204 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + + + E ++ + + Sbjct: 205 VSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGEERLFVGSIQDITERKRQE 264 Query: 317 EGENLTPETVDKCP 330 + E + Sbjct: 265 ALQRQAKEAAEAAN 278 >gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 807 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 149/815 (18%), Positives = 288/815 (35%), Gaps = 71/815 (8%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRT---VRFTWNIDAHGYLK 96 KK+ F++ + ++ + ++L+SE F VRF D Sbjct: 17 KKQTTELKKFDKGISAEISESTQPEEDFLNSEEKFRILAENSPDIIVRF----DIQSRQL 72 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI------GDLLKRQNTWYGKTTLW 150 + ++ G ++ DP + T + Sbjct: 73 YFRQAAVDIYSYSQEEIKGKTHNEL----GSDPEKAKFWKEHNEKVFSTGKTETMEFDCI 128 Query: 151 PIEGTNLYVPIDLAALPIYSR-------NREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + Y +A + +R + + +DN + KR ++ Sbjct: 129 LPQRKKYYFNTLIAPEFVNDEVASVLTISRNVTDVKKTESTLKETLDNLEEMIKKRTEEI 188 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------------------- 244 +K+ E I S ++ S Sbjct: 189 EKAYRSLKESE-KCLAEAQKIAHLGSWNWNIVSNELYWSDEIYRIFGLSPQEFGATYDAF 247 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 Y H +D E + + + N Sbjct: 248 LSYVHPEDRDCVNNAVKGALEGKPYSIDHRIILKGGEERIVHEQGEVIFENGNVPVRMAG 307 Query: 305 HRNHPSLSAYFDEGENLT----PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD 359 + ++ + ++ P + G + N + ++T Y + Sbjct: 308 IVQDITERKKIEKALGMANAYNRSLIEVSLDPLVTIGPDGKITDVNRATEIVTGYFRSEL 367 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 I A + I+ + + + Sbjct: 368 IGTD------FSDYFTEPEKAKEGYQYVFQKGLVRDYQLE---IRHKHGHITPVLYNASI 418 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + + + + K++ L + +E+++D I +G I S N+ Sbjct: 419 YRDENGRVTGVFAAARDITELKKAEEKIKA----LANAVESSNDAIITGTLDGTITSWNK 474 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++GY E+++ K ++ N + +I TL K+ + Sbjct: 475 GAEQIYGYLAEEVMGKNVSILEPDNLKGEIKQLFDKIKQGKK--VKRYETLRLKKDGIAV 532 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++ + + + S +S DI+E K +N L H K++AE + KS+FLA +SHE Sbjct: 533 NVSVTLSPIFDVSGNPVAFSGIARDITEKKITEN-LLHEKQMAEFANRTKSEFLANMSHE 591 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL +IIGFS+++ Q +G L N + + + I SG +L+++N +LD+SKIE+ KM Sbjct: 592 LRTPLNSIIGFSDMLYEQAYGEL-NQKQLRAISNISNSGKHLLNLINGILDLSKIEANKM 650 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L ++ L ++ +++ A++K I I T ++I +I AD +I N++ NA Sbjct: 651 ELDYKEFELASSLDLIRNILSPIADKKNIEIETGVDSSISKICADEDRFIRIMFNLVDNA 710 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I F+ + I T E V + V DTG+G+ + K KPF Q+ + + +GTG Sbjct: 711 IKFSFENSLVKIGTRKK-GELVEITVEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTG 769 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL L K +V+ + G + S KG+ P+ Sbjct: 770 LGLSLVKQIVNLHGGYVWFKSEQGKGSTFAFAIPI 804 >gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1179 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 119/645 (18%), Positives = 234/645 (36%), Gaps = 32/645 (4%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 AL + + + ++ + E+ + ++ +++ + L+ Sbjct: 163 RDALLVSVKGDEASIAQLAVDINRAEQAIPGLPAKAQGVAVYVVRHAQTLLSVARIMPGL 222 Query: 253 VLKTEK---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + L + + N Y F L + F Y + Sbjct: 223 LADLSAYKGEHLAAGLDRLYQVHYEQQQRTANIYRLFLLFAALLMLAYSIFVYFRLKVKG 282 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + +++ I G++ Y N F+ ++ Y + + I G + Sbjct: 283 QQLERALAEVSNQQHALNEHAIVSITDVKGDITYVNDKFIEISGYSADELI----GKNHR 338 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + D + + ++ + + + +Q + Sbjct: 339 MVNSGQHDQEFFRELWQTVANGRVWHGQVKNRA---KNGSCYWVEATVVPFMDQDGKPYQ 395 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + + +++ E L S+++ +G+ +++++G N + G+ + Sbjct: 396 YVSMRTDITAQKAMELQVQSERRLLKSVMDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTI 455 Query: 490 EDILRKPFTVFLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 E+++ + L + P + + E K L + I+ Sbjct: 456 EEVVGRNLHDLLHVHRPDGTRVTADECPIRQSTMNKKVYHSEAEYF-QHKNGTLFPIAIV 514 Query: 545 IKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + DISE K + +L AK+ AE S K DFLA +SHEIRTP+ Sbjct: 515 ASPMIDGDLITGSVAAFQDISERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMN 574 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG +E+ + EY N + S + +L I+ND+LD SKIESGKM L Sbjct: 575 GIIGMTELALDTEMSA----EQREYLNMVKSSADALLTIINDILDFSKIESGKMELESVE 630 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 + + A + + A +K + + IP +L D ++Q+ N+L NAI F+ Sbjct: 631 FDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFSE 690 Query: 721 SGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G I + + V + V D G+G+ +L + F Q S + GTGL Sbjct: 691 HGA-ITLRMKLLMQTSDGLCVRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTGL 749 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDC 819 GL ++ +V A G + S G++ P+ + P + Sbjct: 750 GLAISSKLVAAMGGDLSVESQVGIGSVFGFTTTLPVA-LNQPSEI 793 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 20/255 (7%), Positives = 69/255 (27%), Gaps = 16/255 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147 D G + ++++ + G A ++IG V+ + + + W+G+ Sbjct: 308 TDVKGDITYVNDKFIEISGYSADELIGKNHRMVNSGQHDQEFFRELWQTVANGRVWHGQV 367 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G+ ++ +P ++ + ++ + + + + Sbjct: 368 KNRAKNGSCY--WVEATVVPFMDQDGKP--YQYVSMRTDITAQKAMELQVQSERRLLKSV 423 Query: 208 HEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + + + + + L + + ++ P Sbjct: 424 MDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLLHVHRPDGTRVTADECP 483 Query: 261 LLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S + E E F N + + + ++ S + + Sbjct: 484 IRQSTMNKKVYHSEAEYFQHKNGTLFPI-AIVASPMIDGDLITGSVAAFQDISERKFTER 542 Query: 318 GENLTPETVDKCPIP 332 E+ + Sbjct: 543 ELLRAKESAEAASRA 557 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 8/145 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G ++ E +G +++G L D+ + D D + + Sbjct: 431 VYMLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLLHVHRPDGTRVTADECPIRQSTMN 490 Query: 146 KTTLWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 K + PI + A P+ + +G R Sbjct: 491 KKVYHSEAEYFQHKNGTLFPIAIVASPMIDGD-LITG--SVAAFQDISERKFTERELLRA 547 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 548 KESAEAASRAKGDFLATMSHEIRTP 572 >gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 1643 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 139/782 (17%), Positives = 274/782 (35%), Gaps = 58/782 (7%) Query: 66 NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSD 123 + F V +W + + S + + +G A ++ G R D+ Sbjct: 409 EEQNRTEALAFLNGGPVVALSWRPEPGWPVHYASANVEQVLGYTAEELKAPGFRFADLLH 468 Query: 124 ILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 + I L + + Y P Y+ + + RG+ Sbjct: 469 PEDTQRVDREIRAQLADGAAH-FEQLYRVRHRSGGYRWCYDYTSPEYNEDGQLRLLRGY- 526 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLH---------EIKKGHSSVEKEKYDIFSQQSPPPH 233 I+ L + ++ ++ ++ + ++ S Sbjct: 527 ILDRTEEQQTLEQLTRSRERLALATESAGLGIWDYDLTSDQLDWDEGMFRLYGVSSEAFG 586 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 ++ +L + + ++ E+++ + I+ + + ++ Sbjct: 587 GTFQDWTRTLMPESRERAQAAFEQAVAYSSTFETTISIR---RPIDGAERILQGQAQIIR 643 Query: 294 NNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPS 347 + + ++ + + E + P+ + G N + Sbjct: 644 DETDQAVRVVGVNRDITEQETNRRRLIAEEAKFRGLFELSPVGIAMNDFQTGEFLEFNDA 703 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 Y + G LS P+ + + R I + Sbjct: 704 INEPAGYTREE----FGRLSYWDVTPESYMPQEQEQLESMRRTGRYGPFEKEY--IHKDG 757 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + E + I + +T+ + ++ + I + TS G+A+ Sbjct: 758 HRYPVLLHGFRTTTPEGREVI--WSIIQDITETKAAEAALQATKERFEGIFQKTSSGVAV 815 Query: 468 ---IN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 ++ R+ L N A ++ E ++ T + L + Sbjct: 816 YRPVDGGRDFEFLEFNPASERINQVSREAVIGGKLTELFPGVVEMGLLGALQRVAGTGHP 875 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E + + +E++ R S D++E KQ + + AE+ S Sbjct: 876 ---EHLPVTDYHDERISGWRENYIFRLSSGEVVAVYDDLTEIKQAQEQ-------AEQAS 925 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTPL A+IG S+++ + R ++ N + S ++L I+N Sbjct: 926 RAKSEFLANMSHEIRTPLNAVIGLSQLLLETSL----DKRQQDHLNKVLSSSRMLLGIIN 981 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 D+LD SKIESG++ L L E V +L + K++ + S IP +L D Sbjct: 982 DILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELVYSLPPQIPCVLVGDS 1041 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKA 756 + Q+ N+LSNA FTP GG++ + + + VRDTG+GM+ +L + Sbjct: 1042 LRITQVLTNLLSNATKFTPEGGEVEMGIQLVEPPKADSVTLRFFVRDTGIGMSEEQLGRL 1101 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTS 814 + F Q S R G+GLGL +++ +V+ G S P +G+ E+ PL Sbjct: 1102 FRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALEATSKPGQGSTFAFELTLPLGTPQ 1161 Query: 815 HP 816 P Sbjct: 1162 AP 1163 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 52/516 (10%), Positives = 125/516 (24%), Gaps = 34/516 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 + A G++ S + + +IG + + + + G Sbjct: 293 VGADGHISRTSRRALSILNTSSEALIGRSVFTLLGCTPGSGCPGDLASAPPLRCPYSGPP 352 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + A + G V + R D + + Sbjct: 353 ISADSCELIGALRSGEAYE-TRDLFQAPEGEPVLVDVRIKRAATDGTTILLFQEVSKEEQ 411 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYY-------------AHK 250 + + + + P + +V T Sbjct: 412 NRTEALAFLNGGPVVALSWRPEPGWPVHYASANVEQVLGYTAEELKAPGFRFADLLHPED 471 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + E L + + + Y N + + + Sbjct: 472 TQRVDREIRAQLADGAAHFEQLYRVRHRSGGYRWCYDYTSPEYNEDGQLRLLRGYILDRT 531 Query: 311 LSAYFDEGENLTPETV----DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 E + E + + + + Y + + L S Sbjct: 532 EEQQTLEQLTRSRERLALATESAGLGIWDYDLTSDQLDWDEGMFRLYGVSSEAFGGTFQD 591 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + L A + S + + + ++ Sbjct: 592 WTRTLMPESRERAQAAFEQAVAYSS----TFETTISIRRPIDGAERILQGQAQIIRDETD 647 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484 + + G+ + + N+R++ E + + E + GIA+ + + G L N A+++ Sbjct: 648 QAVRVVGVNRDITEQETNRRRLIAEEAKFRGLFELSPVGIAMNDFQTGEFLEFNDAINEP 707 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY E+ R + ++ L + EK + K+ + + Sbjct: 708 AGYTREEFGRLSYWDVTPESYMPQEQEQLESMRRTGRYGPFEKEYI--HKDGHRYPVLLH 765 Query: 545 IKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKI 577 + + DI+E K + L K+ Sbjct: 766 GFRTTTPEGREVIWSIIQDITETKAAEAALQATKER 801 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 45/384 (11%), Positives = 108/384 (28%), Gaps = 29/384 (7%) Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + ++ + +F LR+ + + L D T P + + Sbjct: 36 RDVVVRTRDGFRLF---LSTMLLRLDHLGADLETPLGRLDLPRATTLSPDASVVDGLRAI 92 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LSHRNHPSLSAYFDEGENLTP-ETVDK 328 + I L + + + L+ + + L P T+ Sbjct: 93 RNRGEHICLVDDRGELSGILSYTDLASGLDPNMLAQTQSIGELFRWTQAPLLNPDATLRG 152 Query: 329 CPIPFFVYSHGNLFYANPS--FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + +LT+ + + L L+A S + Sbjct: 153 AMAAMREQDQEAAVVVDDERPVGILTQKDIIKLLAAGTDLGCTLEACMSSPVETLHE-QA 211 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ R+ + + I ++ N ++ + + R+ Sbjct: 212 SIAEALSFCRQRRIKRVVVVDDAGRLTGVIGQKELVNLYFNQWFALLQEQQDELAQLNRE 271 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----- 501 ++ L SI E G+ ++ +G I T+R + E ++ + L Sbjct: 272 LQESNRALESITEEVPGGLLVVGADGHISRTSRRALSILNTSSEALIGRSVFTLLGCTPG 331 Query: 502 ---------------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + P + I +L + E L E + + + + IK Sbjct: 332 SGCPGDLASAPPLRCPYSGPPISADSCELIGALRSGEAYETRDLFQAPEGEPVLVDVRIK 391 Query: 547 KLPFSSCYSLTMHDISEWKQEKNK 570 + L ++S+ +Q + + Sbjct: 392 RAATDGTTILLFQEVSKEEQNRTE 415 >gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 840 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 108/532 (20%), Positives = 196/532 (36%), Gaps = 24/532 (4%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK 355 + L + + + + AN F L+ Y Sbjct: 127 GVIVHARNITEQKRLEEALRRSQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYC 186 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 D P+ + R D I + Sbjct: 187 RQDIEGRKSWTE--FVHPQDLEQMR-HFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLC 243 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 I P + + + + ++ QL +I ++ D I ++ EG I Sbjct: 244 IDTI-----PGTTQSIASLMDITERKQAENALQESRAQLQAITDSAQDAIVLMGPEGEIA 298 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK--ITLGS 532 N +FGY E+I+ K L + K Sbjct: 299 YWNPMAESIFGYTAEEIVGKDLHNILAPARYHEQHLKAFQHFQQTGRGDAIGKTIELSAL 358 Query: 533 TKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 ++ + + + + + + + + DI+ K + K+ A+ AE + KS+FLA Sbjct: 359 DRDGREFPISLSLSAVSLQNRWHAVGIVRDITRQKDAEEKIVKARDEAEAANRAKSEFLA 418 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ I+G ++++ + +Y S + +++D+LD+S+I Sbjct: 419 NMSHEIRTPINGIMGMMQLLEATSL----DVEQAQYVQMGLTSARRLTRLLSDILDLSRI 474 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709 E+G+M + E + + L + EK I + S +P IL D ++QI Sbjct: 475 EAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLPEILLGDETRLQQILF 534 Query: 710 NILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N++ NA+ FT G ++ ++ + +V+L V DTG+GMT + KPF Q N Sbjct: 535 NLVGNALKFTEQG-RVQVNWHLMKRRERDIQVLLTVSDTGIGMTPHRAGDLFKPFVQAEN 593 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + + +G GLGL + K +V+ G+ + S P G+ I+ PL P Sbjct: 594 AYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLPLKVPEQPE 645 Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 78/273 (28%), Gaps = 9/273 (3%) Query: 310 SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E V P FV + N ++L + + + + Sbjct: 14 TQDEPSQETLRKYQAIVSTVKEPMSFVDRNYVYQAVNQAYLDTFAGSRKEIVGHT--VES 71 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 LL A + + + + T ++ ++ + Sbjct: 72 LLGAHVFDNIVKPRLD--RCLEGKEEHYESWFDT---PAGIQECLSVFFHPCLDENGQIQ 126 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + +I E T II + I N L GY Sbjct: 127 GVIVHARNITEQKRLEEALRRSQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYC 186 Query: 489 VEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 +DI + +T F+ M H+ D + + + I Sbjct: 187 RQDIEGRKSWTEFVHPQDLEQMRHFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLCIDT 246 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 +P ++ ++ DI+E KQ +N L ++ + Sbjct: 247 IPGTTQSIASLMDITERKQAENALQESRAQLQA 279 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/386 (8%), Positives = 95/386 (24%), Gaps = 24/386 (6%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKR 139 + F D + + +++ T +++G + + + + + L+ Sbjct: 36 PMSFV---DRNYVYQAVNQAYLDTFAGSRKEIVGHTVESLLGAHVFDNIVKPRLDRCLEG 92 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + ++ G + + P N + G +R Sbjct: 93 KEEH-YESWFDTPAGIQECLSVFFH--PCLDENGQIQGV--IVHARNITEQKRLEEALRR 147 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKT 256 + + + E + +E I S L ++ + L+ Sbjct: 148 SQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYCRQDIEGRKSWTEFVHPQDLEQ 207 Query: 257 EK----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + + F + +++ T+ ++ + Sbjct: 208 MRHFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLCIDTIPGTTQSIASLMDITERKQAE 267 Query: 313 AYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E D + G + Y NP + Y + + + L +L Sbjct: 268 NALQESRAQLQAITDSAQDAIVLMGPEGEIAYWNPMAESIFGYTAEEIVGK--DLHNILA 325 Query: 372 APKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + + I + L + + A Sbjct: 326 PARYHEQHLKAFQHFQQTGRGDAIGKTIELSALDRDGREF---PISLSLSAVSLQNRWHA 382 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456 GI + + + K+ + + Sbjct: 383 VGIVRDITRQKDAEEKIVKARDEAEA 408 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 14/144 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + G + + G A +++G L ++ H+ Q T G Sbjct: 291 MGPEGEIAYWNPMAESIFGYTAEEIVGKDLHNILAPARYH-EQHLKAFQHFQQTGRGDAI 349 Query: 149 -------LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 +G + + L+A+ + +R + GIV D + Sbjct: 350 GKTIELSALDRDGREFPISLSLSAVSLQNR------WHAVGIVRDITRQKDAEEKIVKAR 403 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225 + + K + + Sbjct: 404 DEAEAANRAKSEFLANMSHEIRTP 427 >gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1624 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 126/744 (16%), Positives = 257/744 (34%), Gaps = 33/744 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147 DA G + ++ + G ++ G + V+ + + L W G+ Sbjct: 368 TDAEGRIDWVNSQYEANTGYSLDEVRGRKPSLVASGQTPPETYRQMWSRLIAGLPWRGEF 427 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +GT + L+ P++ G + R + D Sbjct: 428 INQRQDGTIYHDEATLS--PVFDDRGRRIAIVGLHENVTERITAHQELQRRERELNDALA 485 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + ++ E +++ + + Sbjct: 486 QQTAIFDNAPPVLIVADDRLLRFNPACLELLGVQPGQLEGRRVETIFGGEELHRRFMARI 545 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNS-KESFEYLSHRNHPSLSAYFD 316 E+ +E + + + LQ + + A Sbjct: 546 EGRLEAGESVREVARLVRRDGTVFEARLSGRLLPLQGYAHACIWVVEDVTEARRAEAAMR 605 Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPK 374 E + + F + L + + + +L + Sbjct: 606 EMNERLILAQEAGRVGVFDLDLARDHLVFSEKLGSLYGLPHRPQGLRLVDWMDSLHMEDR 665 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + R+ + + + + + + G++ Sbjct: 666 PRVQARLDAALAGRATGLQDS-----WRVVRPDGSERWLLCSARIERDAEGRARRLIGVQ 720 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + ++ ++ ++++A + + +G NRA + FG ED L Sbjct: 721 VDVHEQKQLEARLADQLAFQQALVDAIPIPLFHKDGDGRYRGFNRAYEEAFGIRREDFLG 780 Query: 495 KPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPF 550 K FL Q + I + E + E L + + Sbjct: 781 KTVHEAGFLNQAERAEFEADARTIRAGGPPIHKEVDLTYADGEIHHTLFWMHGFQRPDGS 840 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 T+ DI++ ++ + +L AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + Sbjct: 841 PGGSIGTLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLA 900 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 P R +Y I ++G +L ++ND+LD S+IE+GK+ + +P LD + Sbjct: 901 LKSGLTP----RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEG 956 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728 +V A K + + A ++P ++ D + QI +N +NAI FT G + + Sbjct: 957 MADVVGYKAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVR 1016 Query: 729 TTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 V VRDTG+G+ ++ + + F Q S R G+GLGL ++K + + Sbjct: 1017 VVERHGRRVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAE 1076 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G+ S +G+ ++ PL Sbjct: 1077 LMGGEVGAESAVGEGSTFWVMLPL 1100 Score = 90.9 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 42/467 (8%), Positives = 108/467 (23%), Gaps = 36/467 (7%) Query: 155 TNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + + + +AA+ + E G G + G L + L + Sbjct: 35 SAIGAWLAVAAVAEWREAGRAQEREGLLG-----HAAEVLMGQTAGSPLLGAVALLGLSE 89 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 +V + ++ ++ + Y + + + P + L Sbjct: 90 PALKAVALGTLPPNAPEALARLAVVRGRFLLSGVYVLNAGGRVVAHETPASPALGMDLSH 149 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----YFDEGENLTPETV 326 + F G+ + + + S + Sbjct: 150 RPYFLQAMRGAVNVYPALGSNSQDRGLYYAAPLYEGDTPASVIVGVVLVKMSFEPVETQL 209 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV------DDIEIAGGLSTLLDAPKLSDNNA 380 + P + S + +A D I TL D Sbjct: 210 QRSGYPMALLSPQGVAFAATQPEWRYAIAPPLTQERIDAIRRQRQFGTLFDNGVAQALPF 269 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD- 439 A R + P+ + Sbjct: 270 RPDAREAVVGGVRYAVERRNLEWHDPDGPWQLVMLDDLHALLPAPQRWQIGVGVFALLVV 329 Query: 440 ---------TRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + +E + L + L+++ + I + EG I N GY + Sbjct: 330 LGGMLLDMMRHRARMALAMERFRVLGAALQSSPVAVVITDAEGRIDWVNSQYEANTGYSL 389 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ + ++ TP + L L + ++ + + + Sbjct: 390 DEVRGRKPSLVASGQTPPETYRQMWSRLIAGLPWRG--EFINQRQDGTIYHDEATLSPVF 447 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +++E +L ++ + ++ Sbjct: 448 DDRGRRIAIVGLHENVTERITAHQELQRRERELNDALAQQTAIFDNA 494 >gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp. JA-3-3Ab] Length = 1459 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 120/714 (16%), Positives = 244/714 (34%), Gaps = 42/714 (5%) Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 A + +G L ++ + T ++G + + +P+ Sbjct: 368 PAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEVQGEVRHE--EARIVPL 425 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 S+ IV K ++ + E + S Sbjct: 426 NSQE-------VLVIVRDITEAKQAELALKAAEQLQRAILEAIPDLIFRLDSQGICLSFI 478 Query: 229 SPPPHLRMKN---KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 S L + V + + + + + + I + Sbjct: 479 SGGEVLLYGSPDTYVGRSLQELLPPELAERRLFFVQQAIATQTRQRYDQSIEIEGETRHE 538 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFY 343 + L + E E + + + G + Sbjct: 539 EVRIVPLNPQEVVVIVRD-VTDRVRSQQAVQESEQKFRALFENAAVAILIRHAETGEILE 597 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 AN + + S++++ + L + Sbjct: 598 ANSQAIAAYGFSSLEELRAFDACE----QSPYRRALQGREFALQPYLEQARQQGSARFEW 653 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 QW R++ + F + + + + ++E D Sbjct: 654 QWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITARKSAEAELEQ-------FFSVALD 706 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 + I + +G NRA GY ++++ +PF ++ + +++ Sbjct: 707 LLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLVEEKRLD 766 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + R + S DI+ KQ + ++ A + AE + Sbjct: 767 HFVNRYRTQDGSYRFIEWRASL----AGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANR 822 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ AI+G + ++ + + + ++ I ++L ++ND Sbjct: 823 AKSEFLATISHEIRTPINAIMGMAGLLLDTSL----DAQQRDWVQTIRYGSEVLLSLIND 878 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SKIES K+ L P SL + + E + L+ A K + + +P ++ D Sbjct: 879 ILDFSKIESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPN 938 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKA 756 ++QI N+LSNAI FTP G +++++ + V +V+DTG+G+ + ++ Sbjct: 939 RLRQILANLLSNAIKFTPQG-EVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRL 997 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 KPF Q+ +S + GTGLGL +++ + G ++ S P +G+ PL Sbjct: 998 FKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIPL 1051 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 47/407 (11%), Positives = 104/407 (25%), Gaps = 10/407 (2%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + AL LD + + + + + + ++ Sbjct: 67 TPSPEARFRAALEASLDAIYLLEAVRDPVTREILDFVFVDVNAKGEELISLQRRQIIGQR 126 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYL 303 + E+ +P +E+F + + Sbjct: 127 LCELLPINRWGGFFEKYKRVVETGIPLEEEFPISGQPGLKASWIHHQVVPVGDGILITSR 186 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + + E + P F + G + PS + T++ + Sbjct: 187 DISEQVQIKQALEASELRYRALYEAIPDLIFEIDPEGLILNCKPSPYVPTQHPPEFCVGR 246 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + L + L N + Sbjct: 247 RAQ--DVFPSSFGEQYQLLAGRALSTQTPQYLEYEMVLPAAAANESEPAIRRYQKACVVA 304 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + + + + +IL+A D I +N +GI LS+ Sbjct: 305 YGRDRVYVL--VRDITKRKEAELALREMEATQRAILQAIPDLILRLNSQGICLSSIPGGD 362 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 P E L + L Y+ + L+ +Q E + ++ Sbjct: 363 VHLCCPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEV---QGEVRHEE 419 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 I L S + + DI+E KQ + L A+++ D + Sbjct: 420 ARIVPL-NSQEVLVIVRDITEAKQAELALKAAEQLQRAILEAIPDLI 465 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 75/311 (24%), Gaps = 19/311 (6%) Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FY 343 + G+L + A + + ++ P + Sbjct: 48 FRGILGSLSRRFPFQPPRGTPSPEARFRAALEASLDAIY-LLEAVRDPVTREILDFVFVD 106 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N L + I L + R T I Sbjct: 107 VNAKGEELISLQRRQIIGQR------LCELLPINRWGGFFEKYKRVVETGIPLEEEFPIS 160 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + + + + K+ +E ++ ++ EA D Sbjct: 161 GQPGLKASWIHHQVVPVGDG------ILITSRDISEQVQIKQALEASELRYRALYEAIPD 214 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I I+ EG+IL+ + +P E + + + LS Q Sbjct: 215 LIFEIDPEGLILNCKPSPYVPTQHPPEFCVGRRAQDVFPSSFGEQYQLLAGRALSTQTPQ 274 Query: 524 TLEKITLGS-----TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 LE + E + + + + DI++ K+ + L + Sbjct: 275 YLEYEMVLPAAAANESEPAIRRYQKACVVAYGRDRVYVLVRDITKRKEAELALREMEATQ 334 Query: 579 EKESSHKSDFL 589 D + Sbjct: 335 RAILQAIPDLI 345 Score = 43.1 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 9/234 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA GY + ++ T+G ++ + + L + Sbjct: 712 DAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLVEEKRLDHFVNR 771 Query: 150 WPIEGTNLY---VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + + LA +Y+ R+ + + ++ A + + + Sbjct: 772 YRTQDGSYRFIEWRASLAGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANRAKSEFLATI 831 Query: 207 LHEIKK------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 HEI+ G + + + Q+ +R ++V ++++K Sbjct: 832 SHEIRTPINAIMGMAGLLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLE 891 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + S E+ + Q K + + N Sbjct: 892 LEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQILA 945 >gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1297 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 114/677 (16%), Positives = 229/677 (33%), Gaps = 44/677 (6%) Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI---------KKGHS 215 A P+ + G G +L ++ + + + Sbjct: 491 ATPLCDPDGNVRGV--IGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDWKLASNI 548 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 ++ ++ + P + + +K E LL + Sbjct: 549 NIWSQELEEIYGLQPGEFGGTFEDWA--KRVHPDDLARVKVELQELLNTGSKEFFSDFRI 606 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPI 331 + + + ++ + + A + E + + I Sbjct: 607 IRQDGSLCWLQSRARVFYDDHGQPLRMVGVNIDVTERKQAEAALQQSEARLKQLLQSSII 666 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + +AN +FL + Y D + D ++ V+ Sbjct: 667 GIIEADSERINFANDAFLKIVGYTQEDLLTGKLRWQDMTPLEYSELDQAKVQEVINA--- 723 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 CI I+ + + A + + + + ++ Sbjct: 724 GFCIPFEKEY--IRKDGSRVPIL----LGAARLSSSPLTWVCFILDLTARKQAEAALQQS 777 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + ++ + I G N+ G +E + + L + Sbjct: 778 ELMFRTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGEGWQKILHPDDVQRTI 837 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK- 565 + L +E + + L + + + DI + K Sbjct: 838 EQWQDSLDTGKDYDIEYRLR-RAADGEYRWHLGRAFPLRDENGQMVKWFGSCTDIHDQKL 896 Query: 566 ------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 Q + A+ E+ + K DFLA VSHE+R+PL I+G+++++K+++ L Sbjct: 897 AIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL- 955 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+R+ L +++DLLD+S+I GK++L+ V L + A+ V+L A Sbjct: 956 --KTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTA 1013 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K I I+T ++ R+ D ++Q+ N+LSNA+ FTP GG+I + + Sbjct: 1014 ESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERV-GSLAHI 1072 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798 +VRDTG G++ L + F Q + G GLGL + + +V+ + G + S Sbjct: 1073 QVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGE 1132 Query: 799 AKGTLIEIIFPLYDTSH 815 GT + PL S Sbjct: 1133 GLGTTFTVKLPLVAVSQ 1149 Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 49/535 (9%), Positives = 156/535 (29%), Gaps = 42/535 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNT 142 W D+ G + ++ +L + +G ++ + + I+ +Q Sbjct: 135 IWIFDSEGKTEYVNHQLAQMLGYSVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQTK 194 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 L +G +L+V + L++ I ++ +FS ++ A + Sbjct: 195 QQFDLRLQRHDGASLWVIVSLSS--ILDKHGQFS--SAIAMLTDITEHKQEPAKPDLERQ 250 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----------KD 251 + + +I + K + + ++ H Sbjct: 251 RLRAILDILPMGVVISDAKGQLLEINPGAKAIWGEDAPLLDNTSQYHQYKGWWPDTGQPL 310 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + L + E+ + E+ D T N + T + + + ++ + Sbjct: 311 TAEEWTLARTLATGEAIIGEEIDIETFNGERKTILNSAVPICDATGTIVNAITVNVDITE 370 Query: 312 SAYFDEGENLTPET-----------VDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD 358 + + ++ P ++ + N + + + + Sbjct: 371 RKRVEAALRQSEALAKARAEELETIMETVPAAVWIAHDPHCHSMSVNRAAYEMMRVPAGS 430 Query: 359 DI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + +GG K + + + + ++ T A + + ++ E+ + Sbjct: 431 VMTATPASGGYPFPFKIQKNGQDVPLNELAMQQAGLTGQEVEAEVEFV-FSSEDVRHIYG 489 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + G + + + ++ + L ++ G I Sbjct: 490 KATPLCDPDGNVRGVIGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDWKLASNIN 549 Query: 476 STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ++ + +++G + + + + + + + L E+L+ ++ Sbjct: 550 IWSQELEEIYGLQPGEFGGTFEDWAKRVHPDDLARVKVELQELLNTGSKEFFS-DFRIIR 608 Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 ++ L L+ + D++E KQ + L ++ ++ Sbjct: 609 QDGSLCWLQSRARVFYDDHGQPLRMVGVNIDVTERKQAEAALQQSEARLKQLLQS 663 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 96/317 (30%), Gaps = 23/317 (7%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354 S + + + ++ +++ G Y N + Y Sbjct: 98 LISSLNLQVRTAREASEVQLAKLKVNYRHLLETANEGIWIFDSEGKTEYVNHQLAQMLGY 157 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 SV+ I + L ++ ++ Y T RL + SL + Sbjct: 158 -SVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQ-TKQQFDLRLQR---HDGASLWVI 212 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 ++ + + + + + K ++E +L +IL+ G+ I + +G + Sbjct: 213 VSLSSILDKHGQFSSAIAMLTDITEHKQEPAKPDLERQRLRAILDILPMGVVISDAKGQL 272 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKI 528 L N ++G + + P L L+ + + Sbjct: 273 LEINPGAKAIWGEDAPLLDNTSQYHQYKGWWPDTGQPLTAEEWTLARTLATGEA-IIGEE 331 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584 T + ++ + ++ + DI+E K+ + L ++ +A+ + Sbjct: 332 IDIETFNGERKTILNSAVPICDATGTIVNAITVNVDITERKRVEAALRQSEALAKARAEE 391 Query: 585 KSDFLARV------SHE 595 + V +H+ Sbjct: 392 LETIMETVPAAVWIAHD 408 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 9/160 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLF 485 I ++ R + E+++ +L +LE ++GI I + EG N ++++ Sbjct: 96 AVLISSLNLQVRTAREASEVQLAKLKVNYRHLLETANEGIWIFDSEGKTEYVNHQLAQML 155 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GY VE I + FLE + +L + + + + L + + + Sbjct: 156 GYSVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQTKQQFDLRLQRHDGASLWVIVSL 215 Query: 546 KKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + DI+E KQ + ++ + Sbjct: 216 SSILDKHGQFSSAIAMLTDITEHKQ-EPAKPDLERQRLRA 254 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 37/332 (11%), Positives = 93/332 (28%), Gaps = 29/332 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPN-NHIGDLLKRQNTWY 144 D+ + ++ K +G ++ G R D++ + + + + + +++ Sbjct: 670 EADSE-RINFANDAFLKIVGYTQEDLLTGKLRWQDMTPLEYSELDQAKVQEVINAGFCIP 728 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G+ VPI L A + S + A ++ + F Sbjct: 729 FEKEYIRKDGS--RVPILLGAARLSSSP-----LTWVCFILDLTARKQAEAALQQSELMF 781 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTEKY 259 L + + + ++ + H DD + Sbjct: 782 RTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGEGWQKILHPDDVQRTIEQWQ 841 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSLS 312 L + + E + L++ + + ++ Sbjct: 842 DSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGQMVKWFGSCTDIHDQKLAIEER 901 Query: 313 AYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANP--SFLLLTKYKSVDDIEIAGGL 366 A E E +++ + SH NP + L K + +D ++ L Sbjct: 902 AQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQAL 961 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + KL + + R R ++ + Sbjct: 962 EVIERNAKLQAGLIDDLLDVSRILRGKLSLNV 993 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 32/368 (8%), Positives = 80/368 (21%), Gaps = 14/368 (3%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + SE F F W +GY + ++ G + G Sbjct: 763 DLTARKQAEAALQQSELMFRTLADTMPQMF-WITQPNGYHEYFNQRWYDYTGTTLEQTQG 821 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 + + Y Y A P+ N + Sbjct: 822 EGWQKILHPDDVQRTIEQWQDSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGQM 881 Query: 176 SGFRGFGIVHVNRVDNDP-RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--P 232 + FG + +++ + E+++ + + + + P P Sbjct: 882 V--KWFGSCTDIHDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNP 939 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 L + S + L+ + + + + Sbjct: 940 ILGWAKLLKSRKLDALKTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLV 999 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD--KCPIPFFVYSHGNLFYANPSFLL 350 S+ D ++ D + + + + + Sbjct: 1000 TTIEAALETVRLTAESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEI 1059 Query: 351 LTKYKSVDDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 K + V + G+S V + + + H ++ Sbjct: 1060 EVKLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVE 1119 Query: 405 WNRENSLA 412 + + Sbjct: 1120 LHGGSVQV 1127 >gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1382 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 131/677 (19%), Positives = 253/677 (37%), Gaps = 49/677 (7%) Query: 164 AALPIYSRNREFSGF--------RGF-----GIVHVNR---VDNDPRALGKRLDKKFSHL 207 A P+++ + E G R F ++ ++ ++ + Sbjct: 114 AGAPLHAPDGERVGTLCVIDPKPRDFSAEDSDVLRDLANCVEGELSLTHIRKSERFLKAI 173 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + G + + +P + + + + + + + + Sbjct: 174 SDAMPGLVAYWDKDLVCRFANTPYLEWFGKPADAIIGTLMPDLLGERLFAMNQSYIQGAL 233 Query: 266 ESSLPEQEDFHTINLNQYTKKQY-----FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E T + + + EN Sbjct: 234 AGQPQHFERTLTKADGSIGYTWANYVPDMDSYGKVAGFFVLVTDVTPMKEAERQIRDAEN 293 Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 ++ + G + NP+ + L Y + + + L+ P S ++ Sbjct: 294 RMRTILNNVMDGIITIDGKGIVISVNPAAISLFGYSGEEVVGQN--VKMLMPEPNRSSHD 351 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + I L + + I + + G+ + + Sbjct: 352 GYLARYQSTGESRAIGVGRELEGLTKDGRVFPMELTITEVEIDGQRM---FVGLVRDITE 408 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + +I+EA+SD I + +GI+ S N A LFGY E+++ P + Sbjct: 409 RKSIASI----QARYMAIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPMSR 464 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556 + L I + T K ++ + + + + + + Sbjct: 465 LIPPGREDEEAQILARIRRGEY--IDHFETFRQRKNGQVFPISVTLSPIRDETGTLMGAS 522 Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DI+E KQ + + A+ AE+ + KSDFLA +SHEIRTP+ AIIG + + + Sbjct: 523 KIARDITERKQAEEETRLARIAAEEANRTKSDFLANMSHEIRTPMNAIIGMTHLAQRTN- 581 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P+ Y I + +L I+ND+LD SKIE+GK++L P SLD+ + + +V Sbjct: 582 ---PTPKQKGYLTKIGNAAEALLGIINDILDFSKIEAGKLDLESIPFSLDDVLGNLVDMV 638 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A +K + + + A ++PR ++ D + QI +N+ +NA+ FT G +III + + Sbjct: 639 GIKAGQKGVEVVLAVAPDVPRTLIGDPLRLGQILINLANNAVKFTDKG-EIIIRVVNAPD 697 Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +++ VRDTG+GMT+ ++ F Q S + GTGLGL ++K + + G Sbjct: 698 IPTAGRLMVSVRDTGIGMTSEQVSNLFHSFNQADTSITRKYGGTGLGLAISKQLCEMMGG 757 Query: 791 KFYIFSTPAKGTLIEII 807 + S P KG+ Sbjct: 758 TVCVESEPGKGSTFIFT 774 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 37/370 (10%), Positives = 95/370 (25%), Gaps = 20/370 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTT 148 D + + + G A +IG + D+ + L ++I L + + T Sbjct: 185 DKDLVCRFANTPYLEWFGKPADAIIGTLMPDLLGERLFAMNQSYIQGALA-GQPQHFERT 243 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G+ Y +P + +GF F +V + + + + + Sbjct: 244 LTKADGSIGYTW--ANYVPDMDSYGKVAGF--FVLVTDVTPMKEAERQIRDAENRMRTIL 299 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 K + S + + + ++ Sbjct: 300 NNVMDGIITIDGKGIVISVNPAAISLFGYSGEEVVGQNVKMLMPEPNRSSHDGYLARYQS 359 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 T E ++ + + + + ++ + + Sbjct: 360 TGESRAIGVGRELEGLTKDGRVFPMELTITEVEIDGQRMFVGLVRDITERKSIASIQARY 419 Query: 323 PETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ++ S + NP+ L Y + + I + L P D A Sbjct: 420 MAIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPM---SRLIPPGREDEEAQ 476 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R I + N ++ ++ M + I + + + Sbjct: 477 ILARIRR--GEYID-HFETFRQRKNG-QVFPISVTLSPIRDETGTLMGASKIARDITERK 532 Query: 442 INKRKMEIEV 451 + + + Sbjct: 533 QAEEETRLAR 542 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 5/138 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150 G + + G A +MIG + + D I ++R +T Sbjct: 436 DGIVTSWNPAAEALFGYTAEEMIGTPMSRLIPPGREDEEAQILARIRRGEYIDHFETFRQ 495 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G + + L+ PI G I + + Sbjct: 496 RKNGQVFPISVTLS--PIRDETGTLMGASK--IARDITERKQAEEETRLARIAAEEANRT 551 Query: 211 KKGHSSVEKEKYDIFSQQ 228 K + + Sbjct: 552 KSDFLANMSHEIRTPMNA 569 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 23/247 (9%), Positives = 58/247 (23%), Gaps = 17/247 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G + ++ G +++G + + + ++ + Sbjct: 309 IDGKGIVISVNPAAISLFGYSGEEVVGQNVKMLMPEPNRSSHDGYLARYQSTGESRAIGV 368 Query: 149 LWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204 +EG P++L + E G R F G+V + ++ Sbjct: 369 GRELEGLTKDGRVFPMELTITEV-----EIDGQRMFVGLVRDITERK----SIASIQARY 419 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY--P 260 + E + + S L ++ E Sbjct: 420 MAIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPMSRLIPPGREDEEAQILA 479 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E + N + +++ + + +E Sbjct: 480 RIRRGEYIDHFETFRQRKNGQVFPISVTLSPIRDETGTLMGASKIARDITERKQAEEETR 539 Query: 321 LTPETVD 327 L + Sbjct: 540 LARIAAE 546 >gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1761 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 141/748 (18%), Positives = 264/748 (35%), Gaps = 50/748 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY----GKTT 148 G L + + G +M+ M + ++ + + + G+T Sbjct: 529 GQLVFTNSRCQQLFGYDKQQMLAMSVDELVPDGVRYRHAALRTQFIAEGRDRKMGKGQTL 588 Query: 149 L-WPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ V I L LP+ R+ + V V+ + K + +F Sbjct: 589 NARKSDGSEFPVEISLGLLPVTDDGKRQVA-----ATVRDMTVELEVAQRIKDSESRFRG 643 Query: 207 LH--------EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTE 257 L + G S V + + S + P ++N S +D T Sbjct: 644 LVTNIPGAVYRTRIGESWVMEYISNNISDITGFPASDFIENSSRSFASLIIEQDLEATTR 703 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S Q + + + + + + N + S E Sbjct: 704 TIEEALLAQKSFEIQYRIKHRDGSIHWVHEKGKASYGDEGGVLWFDGSINDITSSKLAQE 763 Query: 318 G----ENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + P + + + + + + + + Sbjct: 764 EIVQSQQQLETITESIPSTVYQLHWCSSGERTFTFLSSACITTLGFHRDEVM-----NDF 818 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L A + + + + + + Sbjct: 819 DLVAECIISEERSHIIEALSGQTSKGLQWTEEFRYRHPIGEIRWLQAGARGDLQADGCII 878 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 NG + D + +++E ++ + GI ++ G IL N S Sbjct: 879 -WNGYLMDITDRKQIDKELEDREAHFRALFDNAGIGIVNVDERGNILDCNEQFSFYMQTG 937 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 V ++ F F + ++ L + + + + I + KL Sbjct: 938 VAELKSCSFFDFQHLDDREKAREVFADLTEGGSDNLLT-ELRLLNQSGECIWMDITLTKL 996 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 L+M +I+ KQ +L AK A+ + KSDFLA +SHEIRTP+ AII Sbjct: 997 QDPQGKLTSVVLSMANITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAII 1056 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S++ N + Y IDR+ +L I+ND+LD SKIE+GK+++ P L Sbjct: 1057 GMSQLCLQTEL----NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQL 1112 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 D + + + + A +KR+ + + A NIP ++ D + Q+ +N++SNAI FT G Sbjct: 1113 DTLLEDLSDMFSVKATDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQG- 1171 Query: 724 QIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++++S + + VRD G+G+T + E+ K F Q S + GTGLGL Sbjct: 1172 EVLLSISQLERIEDDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLA 1231 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++K +V+ G+ + S G+ Sbjct: 1232 ISKQLVELMGGEIGVESQFGNGSSFYFS 1259 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 35/342 (10%), Positives = 84/342 (24%), Gaps = 25/342 (7%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + + +L L E F + K Sbjct: 299 EFFRDIASLSLNLLLLSVLLLLTGYITARRLTRPIEELEAGIVAFGAGKTKRIEKPIGAM 358 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347 + + F ++ A D N + +D F V +G + + Sbjct: 359 SEIATLTDKFNDMAEVLEEREEALLDSRGNRFAKLIDGMSDKSFYCSVAPNGVIDQVSDG 418 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + ++ D P N L + + Sbjct: 419 VEKVLGVTP--ELLKRKYQRMFSDNPINELNWQYMDKALLGENVPPHQIEM------IDG 470 Query: 408 -ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + E + + + + ++LE+ + + Sbjct: 471 FGKLRRLDLFMQPLLSDNRELLSIEMLFNDVTEQFSAVAWS-------NAVLESAPEAML 523 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525 I+ G ++ TN +LFGY + +L + T+ ++ + + Sbjct: 524 IVEESGQLVFTNSRCQQLFGYDKQQMLAMSVDELVPDGVRYRHAALRTQFIAEGRDRKMG 583 Query: 526 -EKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDIS 562 + + + I + LP + T+ D++ Sbjct: 584 KGQTLNARKSDGSEFPVEISLGLLPVTDDGKRQVAATVRDMT 625 >gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1075 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 122/736 (16%), Positives = 247/736 (33%), Gaps = 55/736 (7%) Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 K++G L D+ + N LL+R + T G AA P +S Sbjct: 199 KVVGEPLMDLKRGYLLSTQNR--ALLQRIDPIIQHLTRSARYGEIYARWYGTAA-PFWSV 255 Query: 172 NREFS--------------GFRGFGIVHVNRV-------DNDPRALGKRLDKKFSHLHEI 210 + F +R F I NR +R +++F+ Sbjct: 256 EQVFWIMSALLVAVLVVGGLYRVFAIARYNRELQRSIAAQQQAEQRLQRSEERFALAMRG 315 Query: 211 KKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 D + + + + ++ L+ Sbjct: 316 SNDGLWDWDIPTDRVTFSPRWLEMLGYQGAPQDADMRHWQAHIHPDDQPRVEQALGRFLS 375 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGE 319 ++ + + + L++ + + + + + E E Sbjct: 376 GDQQHYHSEYRMRHKDGHTIAVLSRAFVLRDATGRAIRMVGTHADITALKEQARRLRESE 435 Query: 320 NLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ++ + + S AN +F + Y + +++ D+ Sbjct: 436 TRFRAYFEQSVVGMVMASLDRHFIDANHAFCHMLGYSRGELLKMN------FPQITYPDD 489 Query: 379 NAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 V A + + + ++ + Sbjct: 490 LERDLVQFEQLRSGQVSAFEMEKRYLHRDGHPVWGL-LSATTVKDELGQASYLIAQVQNI 548 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ + E G+A + + N+ + ++ GYP + +K + Sbjct: 549 DTQKKALEQLRQSESMMRGYFELGLIGMATTTAQHGWVQINQRLCEILGYPEMALRQKSW 608 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 + + L + ++ + I L Sbjct: 609 AEITHPQDRQADEVAIERLRK-GLSEGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGH 667 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + DI+ K+ + L K+ AE + KS FLA +SHEIRTP+ AI+G +E+++ Sbjct: 668 FLTLVQDITARKRMELALQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRES 727 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R ++RSG +L ++ND+LD+SKIE+ ++ L L + V + S Sbjct: 728 DLTS----RQHWCVETLNRSGESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCS 783 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L A K + ++ A +PR ++ D ++QI +N++ NA+ FT G + + Sbjct: 784 LFGYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNLVGNAVKFTKQG-HVSVELNPL 842 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ + +RDTG+G++ + KPF Q +S GTGLGL + +V G+ Sbjct: 843 ADGRLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEM 902 Query: 793 YIFSTPAKGTLIEIIF 808 + ST +G+ Sbjct: 903 QLESTLGEGSCFHFEL 918 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 19/246 (7%), Positives = 60/246 (24%), Gaps = 13/246 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPI 152 + + +G +++ M ++ ++ + + L+ + + Sbjct: 458 FIDANHAFCHMLGYSRGELLKMNFPQITYPDDLERDLVQFEQLRSGQVSAFEMEKRYLHR 517 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G V L+A + + S V ++ + E+ Sbjct: 518 DGHP--VWGLLSATTVKDELGQASYL--IAQVQNIDTQKKALEQLRQSESMMRGYFELGL 573 Query: 213 GHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ P + ++ K + + + L Sbjct: 574 IGMATTTAQHGWVQINQRLCEILGYPEMALRQKSWAEITH-PQDRQADEVAIERLRKGLS 632 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 ++ F + G L+ E +L+ + + E Sbjct: 633 EGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGHFLTLVQDITARKRMELALQEQKEQA 692 Query: 327 DKCPIP 332 + Sbjct: 693 EAANRA 698 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 41/140 (29%), Gaps = 6/140 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTT 148 A +I++ L + +G + +++ + + L++ + + + Sbjct: 581 AQHGWVQINQRLCEILGYPEMALRQKSWAEITHPQDRQADEVAIERLRKGLSEGYALEKR 640 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G ++ ++A + E F +V + ++ + Sbjct: 641 FIRQDG--AFIYASISAGCLRKEGGEIGHF--LTLVQDITARKRMELALQEQKEQAEAAN 696 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 K +V + Sbjct: 697 RAKSTFLAVMSHEIRTPMNA 716 >gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1768 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 137/789 (17%), Positives = 272/789 (34%), Gaps = 54/789 (6%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 V+ + + V + P + D G + + + G A +M+ + + Sbjct: 500 FNDVTEQFSAAAWSNAVLESAPEAMLIV---DEQGQVVFSNSRCQQLFGYDAQQMLALNV 556 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW-------PIEGTNLYVPIDLAALPIYSR 171 + + + + + +G+ V I L LP Sbjct: 557 DQLV-PDSVKHHEALRAKFIGEGVDRRMGLGLGKTLKAKKADGSLFPVEISLGLLPA-DS 614 Query: 172 NREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + G R + + K + +F L G + + Sbjct: 615 D----GLRQVAASIRDMTEELATAKRIKDSESRFRGLVGNIPGAVYRTRLGEQWVMEYVS 670 Query: 231 PPHLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + ++ D +E+ S Q + + Sbjct: 671 DNIAEITGYPAADFIENKKRVFASLILEADREATDTAINKGIAEQQSFEVQYRIQHRDGS 730 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPF---- 333 + ++ + + + S E + + P Sbjct: 731 LRWVHEKGKASYDDEGNALWFDGSIQDVTQSKLAQEKIAQSQQQLETITESIPNTVYQLR 790 Query: 334 FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 ++ + + + + + + + L A + ++ + + + Sbjct: 791 WIANDQRYFTFLSRACITTLGFHRDQLLANFD-----LVADCIIESERARIIRALSGESA 845 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 Q + + NG + + + R++ Sbjct: 846 SGLKWIEEFRYQHPTGEQRWLQAGARGDRQDDGSIV-WNGYLMDISERKQMDRELAKREA 904 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ + GI ++ G+IL N S+ P+E + F + + + Sbjct: 905 HFRALFDNAGIGIVNVDDRGVILDCNEQFSQYLQLPIERLKGSLFFDYQDPEQGLEAKNS 964 Query: 513 LTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKN 569 ++ LE L E + + + + S + DIS K Sbjct: 965 FKHLMGDGADSVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSE 1024 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ AK +A+ S KSDFLA +SHEIRTP+ AIIG S++ + + Y Sbjct: 1025 ELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSL----DKKQQNYVEK 1080 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 IDR+ +L I+ND+LD SKIE+GK+++ P LD + + + + A +K++ + + Sbjct: 1081 IDRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFA 1140 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTG 745 A NIPR ++ D + Q+ +N+++NAI FT G + IS +EE++ VRD G Sbjct: 1141 VAPNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNG 1200 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803 +G+T + K + F Q +S + GTGLGL + K +V+ G+ + S G+ Sbjct: 1201 IGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFF 1260 Query: 804 IEIIFPLYD 812 + F + D Sbjct: 1261 FSVRFKVAD 1269 Score = 97.4 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 64/512 (12%), Positives = 154/512 (30%), Gaps = 23/512 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 F +++ G + ++S + K +G + SD + N D L+ + Sbjct: 404 FYCSLEPDGQIAQVSAGVEKVLGVSPDLLKRKYQRMFSDNPINEANWEYMDSALQGNSVP 463 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDK 202 + + G+ + + + P+ S N E F V Sbjct: 464 PHQVEMIAANGSVRRLDLFM--QPLLSDNGELLSIEMLFNDVTEQFSAAAWSNAVLESAP 521 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + + +F + +++ + + H+ K + Sbjct: 522 EAMLIVDEQGQVVFSNSRCQQLFGYDAQQMLALNVDQLVPDSVKH-HEALRAKFIGEGVD 580 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 L + + + + + G L +S + + + + Sbjct: 581 RRMGLGLGKTLKAKKADGSLFPVEISLGLLPADSDGLRQVAASIRDMTEELATAKRIKDS 640 Query: 319 ENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E+ V P + G + Y + + +T Y + D IE + L + Sbjct: 641 ESRFRGLVGNIPGAVYRTRLGEQWVMEYVSDNIAEITGYPAADFIENKKRVFASLI-LEA 699 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + +++ R IQ + + + + +G Sbjct: 700 DREATDTAINKGIAEQQSFEVQYR---IQHRDGSLRWVHEKGKASYDDEGNALWFDGSIQ 756 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVED 491 + +++ + K+ QL +I E+ + + I N + +RA G+ + Sbjct: 757 DVTQSKLAQEKIAQSQQQLETITESIPNTVYQLRWIANDQRYFTFLSRACITTLGFHRDQ 816 Query: 492 ILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +L + ++ + + L+ + L+ E T E++ L + Sbjct: 817 LLANFDLVADCIIESERARIIRALSGESASGLKWIEEFRYQHPTGEQRWLQAGARGDRQD 876 Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580 S + DISE KQ +L+ + Sbjct: 877 DGSIVWNGYLMDISERKQMDRELAKREAHFRA 908 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 50/153 (32%), Gaps = 8/153 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ + +++ SD + +G I + V K+ G + + RK Sbjct: 379 QREQALLDSRGNRFAKLIDGMSDKSFYCSLEPDGQIAQVSAGVEKVLGVSPDLLKRKYQR 438 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555 +F + Y+ L + + + + L + ++ L + Sbjct: 439 MFSDNPINEANWEYMDSALQGNSVPPHQVEMIA--ANGSVRRLDLFMQPLLSDNGELLSI 496 Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + +D++E + + A + + Sbjct: 497 EMLFNDVTEQFSAAAWSNAVLESAPEAMLIVDE 529 >gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 1029 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 138/764 (18%), Positives = 259/764 (33%), Gaps = 56/764 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + G + ++ L + +G + R + + D + L + + Sbjct: 272 YRTTVDGRILRVNPALARMLGYDDPSELEGRPTSILYVEEADRARFLETLRREGRLVNYE 331 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L +G L+ ++ + G + V + L ++H Sbjct: 332 VRLRRKDGRVLWGLENVLLVQEPDGTECIEG-------TLIDVTELLEQRRRYL-GLYAH 383 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + ++ + + L + + D V Sbjct: 384 TEDAIFWIRVTDDGRFLVEATNPSHQRKTGLTPEMLWNRPLNKILPPDIVAHVTGNYRRC 443 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE---- 319 E E E+ + + T + + + Sbjct: 444 LEAGHPIEYEETLDLPAGRRTWLTQLVPIPDPDGRIRLIAGIARDITELRRLQALLEEEG 503 Query: 320 --------------------NLTPETVDKCPIPFFVYSHGNLFYANPSFL---------- 349 + ++ ++Y G L L Sbjct: 504 LFLEQLVSGASRKTLCERLCRVAERFIEGARASVWMYDEGRLHLCAAPELPESFRALFDG 563 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 L E A + + D + + E Sbjct: 564 QLIGSNQGSLGEAAFSRRPVWVSDIKHDPRWGAFREQALAQGLRACWAVPFFG--RKGEL 621 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + + P+ + K ++ E +L ++ ++G+AI + Sbjct: 622 LGVLGLCFDQVRSPLPDEQAVVARLAHLAGVGMAKVRLREERERLARVVAQITEGVAITD 681 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 G ++ N A + L GY +++L K L + L R ++ Sbjct: 682 TMGNVVWVNEAFTCLTGYRADEVLGKNIEHLLHGPETDRDTLRRMRLRLLRGRPAHARLY 741 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 K+ + I +L Y M D++E + + +L AK+ AE+ S K Sbjct: 742 HYR-KDGSGFWDEVHIDRLYDEQGQHIGYIGLMADVTELVEAERQLKAAKERAEEASRLK 800 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHEIRTPLT I+GF+E + ++ E+ + IDRS +L ++ND+L Sbjct: 801 SAFLANMSHEIRTPLTGILGFAE-LLDEELETRQQEDLREFTHIIDRSARRLLTLLNDIL 859 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+SKIE+ ++ L +P + + +A+ L+Q A EK + + N+ AD + Sbjct: 860 DLSKIEANRLELKLQPTDVVDVARQAVQLMQPLAEEKGLKLELHAEENL-TARADPNRLH 918 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ +N+LSNAI FT G + + V+L V DTG G++ L +PF Q Sbjct: 919 QVLVNLLSNAIKFTDEG-HVRVELG-QKKGWVLLAVEDTGCGISPEFLPHLFEPFRQEHE 976 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +G GLGL + K ++D G+ + S +GT EI+ P Sbjct: 977 GLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEVGRGTRFEILLP 1020 Score = 130 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 48/496 (9%), Positives = 130/496 (26%), Gaps = 44/496 (8%) Query: 90 DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147 DA G + E + + G + M ++ ++ Sbjct: 30 DAETGQILEANPAAERLFGYDRATLCRMHQEELHPAELAASYRKKFRRAVEAGTFRERGL 89 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +G+ ++P++L+ + R+ G+ R + + L Sbjct: 90 IVQHADGS--WIPVELSGQVLEVGGRKLI----QGVFRDLRE----LQRLTETEALYRTL 139 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKYPLLT 263 E + ++ + + + ++ L Sbjct: 140 FETSLAGIYLLQDGRVVVVNPQAAAMFGYTPEEIVGRPVLSIVAEEDRELAAENIRRRLA 199 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E + + + +++ + + L + E Sbjct: 200 GEVEEIRYRFRGLRKDGSRFWAEVRGRRIVYNGRPAILGTVLDIDEQVRAIEKLKQSEAR 259 Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + F+ + G + NP+ + Y ++E S L + + Sbjct: 260 YRRLFEHSVAGFYRTTVDGRILRVNPALARMLGYDDPSELEGRP-TSILYVE----EADR 314 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + R + + RL + + + + + E G + Sbjct: 315 ARFLETLRREGRLVNYEVRLR--RKDGRVLWGLENVLLVQEPDGTE--CIEGTLIDVT-- 368 Query: 441 RINKRKMEIEVMQLCSILEATSDGI--AIINREGI--ILSTNRAVSKLFGYPVEDILRKP 496 ++ + + + T D I + +G + +TN + + G E + +P Sbjct: 369 -----ELLEQRRRYLGLYAHTEDAIFWIRVTDDGRFLVEATNPSHQRKTGLTPEMLWNRP 423 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 L + + + L +E + L ++ P Sbjct: 424 LNKILPPDIVAHVTGNYRRCLEAG--HPIEYEETLDLPAGRRTWLTQLVPIPDPDGRIRL 481 Query: 556 --LTMHDISEWKQEKN 569 DI+E ++ + Sbjct: 482 IAGIARDITELRRLQA 497 Score = 127 bits (320), Expect = 6e-27, Method: Composition-based stats. Identities = 39/386 (10%), Positives = 105/386 (27%), Gaps = 19/386 (4%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAH 249 A G + + + L E + + + + +P + + + H Sbjct: 4 REAPGLKQEALYRALFETTQDAVLIADAETGQILEANPAAERLFGYDRATLCRMHQEELH 63 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 ++ + + + E+ + + + Sbjct: 64 PAELAASYRKKFRRAVEAGTFRERGLIVQHADGSWIPVELSGQVLEVGGRKLIQGVFRDL 123 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E E L + ++ G + NP + Y + + + Sbjct: 124 RELQRLTETEALYRTLFETSLAGIYLLQDGRVVVVNPQAAAMFGYTPEEIVGRP-----V 178 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L D + R R ++ + A N P Sbjct: 179 LSIVAEEDRELAAENIRRRLAGEVEEIRYRFRGLRKDGSRFWAEVRGRRIVYNGRP---A 235 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-P 488 G + + K++ + + E + G +G IL N A++++ GY Sbjct: 236 ILGTVLDIDEQVRAIEKLKQSEARYRRLFEHSVAGFYRTTVDGRILRVNPALARMLGYDD 295 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++ +P ++ + +L + + + K+ ++L + + Sbjct: 296 PSELEGRPTSILYVEEADRA--RFLETLRREG--RLVNYEVRLRRKDGRVLWGLENVLLV 351 Query: 549 PFSSC---YSLTMHDISEWKQEKNKL 571 T+ D++E +++ + Sbjct: 352 QEPDGTECIEGTLIDVTELLEQRRRY 377 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 50/411 (12%), Positives = 128/411 (31%), Gaps = 42/411 (10%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 A + E L + + G + ANP+ L Y L Sbjct: 2 EVREAPGLKQEALYRALFETTQDAVLIADAETGQILEANPAAERLFGYDRA-------TL 54 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + A +R R +Q + + + + Sbjct: 55 CRMHQEELHPAELAASYRKKFRRAVEAGTFRERGLIVQHADGSWIPVELSGQVLEVGGRK 114 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + +++ ++ E + GI ++ ++G ++ N + +FG Sbjct: 115 LIQG------VFRDLRELQRLTETEALYRTLFETSLAGIYLL-QDGRVVVVNPQAAAMFG 167 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y E+I+ +P + + + + L+ ++ + + G K+ + + Sbjct: 168 YTPEEIVGRPVLSIVAEEDRELAAENIRRRLAGEVEEIRYR-FRGLRKDGSRFWAEVRGR 226 Query: 547 KL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE---IR-TP- 599 ++ T+ DI E + KL ++ + H R + + +R P Sbjct: 227 RIVYNGRPAILGTVLDIDEQVRAIEKLKQSEARYRRLFEHSVAGFYRTTVDGRILRVNPA 286 Query: 600 LTAIIGFSEVIKNQRFGP----LGNPRYIEYANYIDRSGN-------------LVLDIVN 642 L ++G+ + + + + + + R G VL + Sbjct: 287 LARMLGYDDPSELEGRPTSILYVEEADRARFLETLRREGRLVNYEVRLRRKDGRVLWGLE 346 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++L + + + G + + + E + + + LYA+ + + ++ Sbjct: 347 NVLLVQEPD-GTECIEGTLIDVTELLEQRRRYLGLYAHTEDAIFWIRVTDD 396 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 56/544 (10%), Positives = 125/544 (22%), Gaps = 62/544 (11%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTL- 149 G + ++ + G +++G + + + +I L + Sbjct: 152 DGRVVVVNPQAAAMFGYTPEEIVGRPVLSIVAEEDRELAAENIRRRLAGEVEEIRYRFRG 211 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ + + R ++G G V K+ + ++ L Sbjct: 212 LRKDGSRFWAEV-------RGRRIVYNGRPAILGTVLDIDEQVRAIEKLKQSEARYRRLF 264 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E I +++ + ++ + L E Sbjct: 265 EHSVAGFYRTTVDGRILRVNPALARMLGYDDPSELEGRPTSILYVEEADRARFLETLRRE 324 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + + +Q + + L L T Sbjct: 325 GRLVNYEVRLRRKDGRVLWGLENVLLVQEPDGTECIEGTLIDVTELLEQRRRYLGLYAHT 384 Query: 326 VDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 D V G NPS T + L+ D A Sbjct: 385 EDAIFW-IRVTDDGRFLVEATNPSHQRKTGLTPEML------WNRPLNKILPPDIVAHVT 437 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 R + +P + GI + + R Sbjct: 438 GNYRRCLEAGHPIEYEETLDLPAGRRTWLTQLVPIPDPD--GRIRLIAGIARDITELRRL 495 Query: 444 KRKMEIEV----------------MQL----CSILEATSDGIAIINREGIILST-----N 478 + +E E +L +E + + + EG + Sbjct: 496 QALLEEEGLFLEQLVSGASRKTLCERLCRVAERFIEGARASVWMYD-EGRLHLCAAPELP 554 Query: 479 RAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + LF G E + + + + L+ LR Sbjct: 555 ESFRALFDGQLIGSNQGSLGEAAFSRRPVWVSDIKHDPRWGAFREQALAQGLRACWAVPF 614 Query: 530 LGSTKE--EKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 G E L + LP + ++ K +L ++ + + + Sbjct: 615 FGRKGELLGVLGLCFDQVRSPLPDEQAVVARLAHLAGVGMAKVRLREERERLARVVAQIT 674 Query: 587 DFLA 590 + +A Sbjct: 675 EGVA 678 >gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1043 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 125/738 (16%), Positives = 264/738 (35%), Gaps = 49/738 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-----NTW 143 +D ++ I++ + + +G + IG + D + +++ T+ Sbjct: 193 MDKSANIELINDSVTRVLGYTPQESIGKP---IWFFFEEDDRTRLSKVVEEGLRNKKKTF 249 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +T + G ++ + A G + N A L+ Sbjct: 250 ELETRIVARNGDIKWISWSVIAK----------GQSWYASGRDNTYQKKILA---DLELL 296 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKY 259 ++ G + I++ + DV + Sbjct: 297 SLVASKVSNGVVISNADGGIIWTNNAFTDITGFTYDDVKGRALSGSLTGESTDVATINEM 356 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 LT S + + + + + ++ +Y+ + + Sbjct: 357 RNLTENRRSFEKDLQIYRKDGSTLWVSFNNSIIFDDCGNVDKYVEVLVDITKRKNAELDR 416 Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + K P + G + + N + + Y + G TLL Sbjct: 417 EILSFAAQKSPSGILIRDGRGEVIWMNEALEHILGYALSEMRGKVFG--TLLVGEDTDLA 474 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 V ++ + + +R + ++ + Q + + Sbjct: 475 VFQDAV---KATSERRPYEIEIKIYKKDRTPIWVL-LSNNPMIDEEGNVVRQTSVVIDIT 530 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ L + +T+ G+ I +++G + N A K+ GY + + ++ Sbjct: 531 KRKEAEEEL----TTLSLVASSTTSGVVINDKDGCVEWVNDAFEKITGYNLTSVYQRHIG 586 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 L+ V LS + + E L + + + + +I + S+ Y Sbjct: 587 DVLKGELTDVALIEKARELSRNKQS-FELDLLIYRSDGQPIWVSVINSVIFDSNGGVSKY 645 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI+ K + +L AK+ A + ++ K F++ +SHEIRTPL A+IG S ++ Sbjct: 646 VEVLIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIEDN 705 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + E + S + ++ ++ND+LD +K+E+G + L +++ E V ++ Sbjct: 706 ----PSHSQQENLKILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNS 761 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 +Q A K I IRT +P IL D + QI LN++ N++ FT GG I + Sbjct: 762 LQYKAEAKHIYIRTDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQ 821 Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +V +R V DTG+G+ +L + F Q GTGLGL + K +++ + Sbjct: 822 TAGQVRIRFEVSDTGIGIPPDKLNTVFESFKQAQTDTTRLYGGTGLGLAITKRLIELHDS 881 Query: 791 KFYIFSTPAKGTLIEIIF 808 + + S + Sbjct: 882 RINVESVYGHSSKFWFTI 899 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 51/151 (33%), Gaps = 3/151 (1%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + + + ++ + + I+++ I N + Sbjct: 146 RDALQTLARGVISHLTLRKQKNELEERLKLHTEFFNLFNNSPEIHCIMDKSANIELINDS 205 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 V+++ GY ++ + KP F E++ + ++ + E L +T E T + + Sbjct: 206 VTRVLGYTPQESIGKPIWFFFEEDDRTRLSKVVEEGLRNKK-KTFELETRIVARNGDIKW 264 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + + + D + K+ L Sbjct: 265 ISWSVIA--KGQSWYASGRDNTYQKKILADL 293 >gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 637 Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats. Identities = 107/645 (16%), Positives = 247/645 (38%), Gaps = 49/645 (7%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMK 237 + R + + + SV K + S + Sbjct: 25 LRKMRAKERKQMEEAESYALLRVMFDQSSSLISVLKPDGTVLDINSSAFDVIGGTKSEAI 84 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNS 296 K T + H ++ + + + ++ + E H T + ++++ Sbjct: 85 GKPFWETLAWVHSPELQERLRQAIKSAAQGEFVSFEATHPTADGKLIYVDFSLKPVKDDD 144 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLL 351 L + +E F++ Y +PS + Sbjct: 145 GNVVLLLPEGRDITKRREAEEALREVAVKYRIVADNTYNWEFWLSPADRFIYTSPSCRRI 204 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + + G L +++ + + ++ L ++ + + Sbjct: 205 SGHGAEEFNADPGLLRSIIHPDDRHLWTDHRHDITQTKALG-----ELELRIVRPDGD-I 258 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + ++ G + + + E + ++L ++E++ D I Sbjct: 259 RWVHHVCIPVFDDNGNHLGTRGSFSDITERKQA----EEKNLRLAVMVESSDDAIVGKTL 314 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +GII S NR K+FGY +++L KP T+ + + + + T+ Sbjct: 315 DGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDERLRHGE--HIEHFETV 372 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ +L+ + + + + + DI+E K+ + K Sbjct: 373 RRRKDGQLIHMSLSYSPIRDAQGRVVAVSTIGRDITERKEME--------------QMKD 418 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 + ++ VSHE+RTPLTA++G++E + + + EY + +++ + LD Sbjct: 419 EMISAVSHEMRTPLTAMLGYTEFMLDNEVPA---DQQREYLRITLHESEKLNELIGNFLD 475 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 + ++ S K + + P+ L + E ++L + I + +++PRI D + ++Q Sbjct: 476 LQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITL--DCPSDLPRICGDNKQLRQ 533 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N++SNA+ ++P GG + + + V++ VRD G+G++ +E+ + F ++ N+ Sbjct: 534 VFNNLVSNAVKYSPKGGAVRV-AARREKDCVVITVRDEGIGISPQAVERIFERFYRVNNT 592 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL L + +V A+ G+ ++ ST KG+ + P+ Sbjct: 593 ACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLPVA 637 Score = 96.6 bits (239), Expect = 2e-17, Method: Composition-based stats. Identities = 33/366 (9%), Positives = 89/366 (24%), Gaps = 22/366 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKR---QNTWYGK 146 G + +I+ IG + IG + ++ + + + +K + Sbjct: 61 PDGTVLDINSSAFDVIGGTKSEAIGKPFWETLAWVHSPELQERLRQAIKSAAQGEFVSFE 120 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G +Y +D + P+ + G + + + K+ Sbjct: 121 ATHPTADGKLIY--VDFSLKPVKDDDGNVVLLLPEG--RDITKRREAEEALREVAVKYRI 176 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + N L H DD + Sbjct: 177 VADNTYNWEFWLSPADRFIYTSPSCRRISGHGAEEFNADPGLLRSIIHPDDRHLWTDHRH 236 Query: 262 LTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 ++ +L E E + + + +++ + + +E Sbjct: 237 DITQTKALGELELRIVRPDGDIRWVHHVCIPVFDDNGNHLGTRGSFSDITERKQAEEKNL 296 Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V+ G + N + Y + + T+L + D Sbjct: 297 RLAVMVESSDDAIVGKTLDGIITSWNRGAEKIFGYSEDEVLGKPI---TMLIPAENVDEV 353 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 L + + + M+ + + + I + + Sbjct: 354 LQMDERLRHGE----HIEHFETVRRRKDGQLIHMSLSYSPIRDAQGRVVAVSTIGRDITE 409 Query: 440 TRINKR 445 + ++ Sbjct: 410 RKEMEQ 415 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 23/226 (10%), Positives = 60/226 (26%), Gaps = 21/226 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150 G + + K G +++G + + ++D + + L+ +T Sbjct: 315 DGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDERLRHGEHIEHFETVRR 374 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G +++ L+ PI G + + + Sbjct: 375 RKDGQLIHMS--LSYSPIRDAQGRVVAVSTIG--RDITERKEMEQM----KDEMISAVSH 426 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + Y F + P + + + + + L + Sbjct: 427 EMRTPLTAMLGYTEFMLDNEVPADQQREYL------------RITLHESEKLNELIGNFL 474 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + + + + L + F +S R+H +L D Sbjct: 475 DLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSD 520 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 58/247 (23%), Gaps = 15/247 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 + S + G+ A + L + +H D+ + + Sbjct: 188 LSPADRFIYTSPSCRRISGHGAEEFNADPGLLRSIIHPDDRHLWTDHRHDITQTKALGEL 247 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +G +V +P++ N G RG RL Sbjct: 248 ELRIVRPDGDIRWVHHV--CIPVFDDNGNHLGTRG--SFSDITERKQAEEKNLRLA---- 299 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY--PL 261 + E + I S + +++V + + Sbjct: 300 VMVESSDDAIVGKTLDGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDER 359 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L E + + + +++ + + ++ ++ Sbjct: 360 LRHGEHIEHFETVRRRKDGQLIHMSLSYSPIRDAQGRVVAVSTIGRDITERKEMEQMKDE 419 Query: 322 TPETVDK 328 V Sbjct: 420 MISAVSH 426 >gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1207 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 114/740 (15%), Positives = 254/740 (34%), Gaps = 42/740 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G ++ ++E + G ++ G +L D+ D I ++ + + Sbjct: 223 TDRTGRIEWVNEGFTRISGYTLDEVRGEKLGDLLQGPETDQETVAAISRAIRNGESIKTE 282 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKF 204 + G ++ +D++ P+Y + F I + + + + + Sbjct: 283 ILNYTKNGHPYWLSLDIS--PVYDEQHHLTHF--IAIESDITHQKEMERMLRSALKESRD 338 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + S+ + I + +++ L Sbjct: 339 IMNALDQSTILSIADPEGRILEVNERFCAITGYRPDELIGKDHRIFKSGVHTPEFFADLW 398 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + + + + + ++ + YL+ R + +E Sbjct: 399 NTIKAGRIWRNEICNRAKDGHLFWVDTTIVPFIGDNGQPERYLAVRFDITGRKKSEEQLR 458 Query: 321 ----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + V G + N S + + G + Sbjct: 459 ASETRYRSVITAMSEGIVVMNKSGVIETCNTSAERILGLSYDQLVGRTGFDPRWEAIHED 518 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + S T S + I+ + ++ ++ Sbjct: 519 GTPFPGEEHPIMVSLTTGRPQSDVVMGIRKPSGELIWISINSQPLCDEHGNVYAAVASFH 578 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R ++++ + L EA+ DG+ +++ + L N+ +++ I + Sbjct: 579 DITARRNAEQELRFQKTLLECQTEASPDGVLVVSPDRRCLYANQRFREMWKITGSPIEQA 638 Query: 496 PFT-----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + + P + + + E+ + L T K+ + Sbjct: 639 TCAASMELMLAQVCDPERVRNEIEELYANPN---LTGKTEIELKDGRTFERYSAPVISSE 695 Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 D++E + + K++F+A VSHE+RTPLT+I G Sbjct: 696 GDYYGRVWFFRDVTERRAIE--------------RMKNEFVAVVSHELRTPLTSIRGSLG 741 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +I G L PR + ++ ++ ++ND+LDI KIESGKM +PV LDE V Sbjct: 742 LIAGGVAGELP-PRAAAMIDIALKNSERLVRLINDILDIEKIESGKMVFKMQPVVLDELV 800 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + I + + + + I + ++ D + Q+ N++SNA+ F+P G ++ ++ Sbjct: 801 RQTIEANRGFGQQYNVQIELTATLPGVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVA 860 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 V + V D G G+ ++ + F Q +S + GTGLGL +++A+V+ + Sbjct: 861 IGREPQGRVRITVTDHGPGIPPEFRDRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERH 920 Query: 789 MGKFYIFSTPAKGTLIEIIF 808 G+ + GT + Sbjct: 921 GGQIGFVTATGVGTTFYVDL 940 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 90/301 (29%), Gaps = 23/301 (7%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351 + + + L DE + P ++ L Sbjct: 63 ANELALFADASQAASLRAELHVLRDELWQTHQRLLADIPADVLDHTTTTLERF------- 115 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 VD++ A LL+ +++ +SD + ++ + + + +L Sbjct: 116 --LTYVDNLVAAP--PALLNRDNTDLRAIQTNLIVVQSDLSATSSILLMQSQALRGQITL 171 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + + R ++ + L + T + + I +R Sbjct: 172 IQAGVVVLILSLLIAGVFLIIRPYARRARREAEQ-----LRMLSLVARYTDNAVIITDRT 226 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITL 530 G I N +++ GY ++++ + L+ T ++ + ++++ L Sbjct: 227 GRIEWVNEGFTRISGYTLDEVRGEKLGDLLQGPETDQETVAAISRAIRNG--ESIKTEIL 284 Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 TK L + I + + DI+ K+ + L A K + + Sbjct: 285 NYTKNGHPYWLSLDISPVYDEQHHLTHFIAIESDITHQKEMERMLRSALKESRDIMNALD 344 Query: 587 D 587 Sbjct: 345 Q 345 >gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece sp. CCY0110] Length = 3557 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 126/765 (16%), Positives = 271/765 (35%), Gaps = 73/765 (9%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--------T 147 E + L + G +G ++ + + + + ++ N + Sbjct: 2598 LEWDDNLNRLFGLP----LGATAHELDEFITLVHPDDRQTVIDACNRSLQEGVDFEEEFR 2653 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +WP +G+ + + G + + + + Sbjct: 2654 VVWP-DGSI--HWLFDKGKLFCDQQGNPCYMAGACV--DITQRKQTEQELQESNIILRSV 2708 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDV--LKTEKYPLL 262 E V+ + I S + ++ + + D LK ++ Sbjct: 2709 IESTPDVVFVKDLQGRIVVGNSTFAEVFNQPIETLLGKNNDERWSPDIAAYLKENDQRII 2768 Query: 263 TSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 S E+ H + TK ++ + + A E Sbjct: 2769 QLGRSETFEETLPHPQGMRTYLTTKSPWYDPQGQIIGVIGIARDISDRKAAEAALKRSEQ 2828 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + F++ G N + L + + + A + + + Sbjct: 2829 DLRTLFNNSYDALFIHDLDGRFLDINDRVVELLGTSRENILARSVAD----FAAEEAPID 2884 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ---FPENMPQNGIEPE 436 + + + + W + + E A + E + Sbjct: 2885 QLAEIFNNVAQGKSLRFE-------WKGKRFDDNSTFDAEVALRKVSLGEKDVILAGVRD 2937 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 D + ++ + ++ E ++ G+ + +G ++ N A + + G VE+ L Sbjct: 2938 ISDRKAAEKALRQSEEYNRTLFETSTIGLVLCRMDGTLVDVNPAYAAILGRTVEETLNLT 2997 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCY 554 + + L + K+ L+ + + I + Sbjct: 2998 YWEITPETYAEAEAAQLESMAKTGR---YAFEKEYIRKDGSLVPVALSGLIVERNGEQYI 3054 Query: 555 SLTMHDISEWKQEK------------------NKLSHAKKIAEKESSHKSDFLARVSHEI 596 + DIS+ KQ + +L AK++AE+ + KS FLA +SHE+ Sbjct: 3055 WSCVEDISQRKQAEVALKEANNQLEQRVLERTAQLQQAKELAEEANQAKSAFLANMSHEL 3114 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G++++++ P + + I + G+ +L ++ D+LDISKIE+G+M Sbjct: 3115 RTPLNGIMGYAQILQR---SPQLSSDHKSNIQVIYQCGSHLLTLIEDILDISKIEAGRME 3171 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 L+ + L+ + + + ++ A +K + +++P ++ D + ++Q+ LN+L NA Sbjct: 3172 LYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERPSSLPTVINTDQKRLRQVLLNLLGNA 3231 Query: 716 IHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I FT G I + T N + + DTGVG++ +L++ PF Q+ S + Sbjct: 3232 IKFTSLGS-IKFRVSFTSSRTNHNGFLQFEIEDTGVGISAEQLDRIFLPFEQV-GSLSQK 3289 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 EGTGLGL +++ ++ + + ST G++ I P+ S Sbjct: 3290 AEGTGLGLAISQKLLQMMGTQLTVESTLGVGSIFSFILPIASWSQ 3334 Score = 190 bits (482), Expect = 9e-46, Method: Composition-based stats. Identities = 46/512 (8%), Positives = 139/512 (27%), Gaps = 24/512 (4%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLW 150 G ++++ + ++ G +++ + L N + + Sbjct: 1300 GQFITVNQKFCDILDYQESELRGKTFQEITYPDDLPDTKTYAQQLVSGEVNAYSVEKRYV 1359 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G + A + F G++ + +++++ L E+ Sbjct: 1360 KRDG--QITWSNTTASLVRDATGTPQYF--VGVIEDIEQRKIAEQKLQASERRYATLTEL 1415 Query: 211 KKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + + + + E + Sbjct: 1416 SPTGIFRTDPQGNCCYVNTRWCEMAGLTPEDAQGQGWVNALHPDDRERMMQEWDQAAQNR 1475 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENL 321 + F + ++ Y+ + E E Sbjct: 1476 QMPFNTDCRFQKPDGTVIWLVVQATEETDHQGNVTGYVGSITDISDRKQKEIALQESEER 1535 Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + D I V G N S + Y + + +T D+ Sbjct: 1536 FRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAELL------NTTFQDITHPDDLD 1589 Query: 381 IKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 I + + + I + + + + E + + D Sbjct: 1590 IDLNFVRQMLAGEIVTYKMEKRYIHKQGD-IIWILLNVSLVRDHQGEPLYFISQIQDISD 1648 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ ++ + ++ E + G+ + +G + N A + + GY + + + + Sbjct: 1649 RKAAEQALQDSEQYVRTLFETSPIGLLLCRMDGNFVELNPAFAAIIGYSLAETQQLSYWQ 1708 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 ++ L ++ EK + + L I + ++ Sbjct: 1709 ITPESYSEQEQVMLKQLEETGYYGPYEKEYIHKEGYLVPVRLSGRIIERHGEKFIWSSIE 1768 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 DI++ K + +L ++ +++F++R Sbjct: 1769 DITDRKTAEKQLQDSETRYRGIVQDQTEFISR 1800 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 64/574 (11%), Positives = 165/574 (28%), Gaps = 57/574 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G + ++ + ++IG + + + P + + + W G+ Sbjct: 1170 TDTQGKITYANDHFCEVFQYNREELIGQTHH-LVNSGYHSPAFFQELWTTIGQGKVWKGE 1228 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS- 205 +G++ +D +P + F+ I + + +F Sbjct: 1229 IKNQAKDGSHY--WVDTVIVPFLDEAGKP--FQYMAIRFEITQRKQAEIALQESEARFRV 1284 Query: 206 ---------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 L + +V ++ DI Q + ++ Y KT Sbjct: 1285 FFEHAAVGIALASMTGQFITVNQKFCDILDYQESELRGKTFQEI-----TYPDDLPDTKT 1339 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLS 312 L++ E ++ ++ + + +++ + Sbjct: 1340 YAQQLVSGEVNAYSVEKRYVKRDGQITWSNTTASLVRDATGTPQYFVGVIEDIEQRKIAE 1399 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E + P F GN Y N + + D + G ++ L Sbjct: 1400 QKLQASERRYATLTELSPTGIFRTDPQGNCCYVNTRWCEMAGLTPEDA-QGQGWVNALHP 1458 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + R Q + + E+ + Sbjct: 1459 DDRERMMQEWDQAAQNRQMPFNTD-----CRFQKPDGTVIWLVVQATEETDHQGNVTGYV 1513 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + D + + ++ + + S G+ +++ EG L N ++ ++ GY + Sbjct: 1514 GSITDISDRKQKEIALQESEERFRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAE 1573 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 +L F + + +++ ++L+ T + K+ ++ + + + + Sbjct: 1574 LLNTTFQDITHPDDLDIDLNFVRQMLA-GEIVTYKMEKRYIHKQGDIIWILLNVSLVRDH 1632 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKES----------SHKSDFLARVSHEIR 597 + + DIS+ K + L +++ +F+ E+ Sbjct: 1633 QGEPLYFISQIQDISDRKAAEQALQDSEQYVRTLFETSPIGLLLCRMDGNFV-----ELN 1687 Query: 598 TPLTAIIGFS----EVIKNQRFGPLGNPRYIEYA 627 AIIG+S + + + P + Sbjct: 1688 PAFAAIIGYSLAETQQLSYWQITPESYSEQEQVM 1721 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 58/528 (10%), Positives = 152/528 (28%), Gaps = 32/528 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143 + D G ++ + G G + + RQ + Sbjct: 1420 IFRTDPQGNCCYVNTRWCEMAGLTPEDAQGQGWVNALHPDDRERMMQEWDQAAQNRQMPF 1479 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +GT + + + A +G+ G + + +++ Sbjct: 1480 NTDCRFQKPDGT--VIWLVVQATEETDHQGNVTGY--VGSITDISDRKQKEIALQESEER 1535 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEK 258 F + + + S + ++ L + D+ Sbjct: 1536 FRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAELLNTTFQDITHPDDLDIDLNFV 1595 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314 +L E + ++ + + ++++ E + + + Sbjct: 1596 RQMLAGEIVTYKMEKRYIHKQGDIIWILLNVSLVRDHQGEPLYFISQIQDISDRKAAEQA 1655 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E + PI + GN NP+F + Y + LS Sbjct: 1656 LQDSEQYVRTLFETSPIGLLLCRMDGNFVELNPAFAAIIGYS----LAETQQLS--YWQI 1709 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + VML + + T I + + + Sbjct: 1710 TPESYSEQEQVMLKQLEETGYYGPYEKEYIHKEG---YLVPVRLSGRIIERHGEKFIWSS 1766 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + +++++ + I++ ++ I+ +G IL N A + FG DI+ Sbjct: 1767 IEDITDRKTAEKQLQDSETRYRGIVQDQTEFISRFLPDGTILFVNEAFCRYFGVNASDII 1826 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + + + + ++ + + +E + ++ + + + L + Sbjct: 1827 GQNYQPVIYEPDRERVMQQVSTLSPDNPITIIENRIIV---NGEIRWTQWVNRILFDDTG 1883 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 Y DI K+ + L + E+ +++ LAR ++R Sbjct: 1884 NFLEYQSVGRDIQARKEAEIALQQLNEELEQRVYERTEELARSEQDLR 1931 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 54/535 (10%), Positives = 141/535 (26%), Gaps = 50/535 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146 + G +++ L + IG +++ D++ +D + + + T+ + Sbjct: 1550 VSPEGQWLKVNSSLCEIIGYSEAELLNTTFQDITHPDDLDIDLNFVRQMLAGEIVTYKME 1609 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + I L + E F + + ++ Sbjct: 1610 KRYIHKQGDI--IWILLNVSLVRDHQGEPLYF--ISQIQDISDRKAAEQALQDSEQYVRT 1665 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E + + + + + + S + + L Sbjct: 1666 LFETSPIGLLLCRMDGNFVELNPAFAAIIGYSLAETQQLSYWQITPESYSEQEQVMLKQL 1725 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGEN 320 P ++++ + ++ + + + E Sbjct: 1726 EETGYYGPYEKEYIHKEGYLVPVRLSGRIIERHGEKFIWSSIEDITDRKTAEKQLQDSET 1785 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V + G + + N +F + D I P + + + Sbjct: 1786 RYRGIVQDQTEFISRFLPDGTILFVNEAFCRYFGVNASDIIGQNY-------QPVIYEPD 1838 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + + + I N E + + + + Sbjct: 1839 RERVMQQVSTLSPDNPITIIENRIIVNGEIRWTQWVNRI-LFDDTGNFLEYQSVGRDIQA 1897 Query: 440 TRINK------------------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + ++ L +I D + I + +G +L N Sbjct: 1898 RKEAEIALQQLNEELEQRVYERTEELARSEQDLRAIFNNVYDALFIYDGDGTLLDVNHRA 1957 Query: 482 SKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL- 539 +L G E +L F N ++ YL + +T++ G ++ L Sbjct: 1958 LELHGVTREQLLAATMNDFRTSNNALELIPEYLERLQQG---ETVQFEWEGRRLGDRTLF 2014 Query: 540 --SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + L + + DIS+ + + ++ A+ FL V Sbjct: 2015 DAEISMRSLALGNRPVILVGVRDISQKQAAFRE----RQQAQIALQESQRFLQTV 2065 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 75/650 (11%), Positives = 168/650 (25%), Gaps = 65/650 (10%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + + +S N F R W D + ++G Sbjct: 2302 DISDRKEAEQALEESRNMFKLVLDTIPQRVFWK-DRQSRFLGCNPAFANDYQLTHADIVG 2360 Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 ++ ++ + + + G N + I + +P+ + Sbjct: 2361 KTDLELPWAKWGDLYRADDARVMNTRTPQLNYEEPTNNLAGEN--IWIRSSKIPLTNTQG 2418 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQQSPPP 232 E G G + +++ L +G + Sbjct: 2419 EVVGVLGC--YDDVTERKQAEQALEESEERLRLALKSANQGLYDLNLTTGKAIVSAEYAT 2476 Query: 233 HL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---K 285 L + + H DDV + L + + +F Sbjct: 2477 MLGYDPATFEETNGKWIERLHPDDVERVTNVYLNYVAGTITDYRVEFRQQTQQGKWKWIL 2536 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFV-YSHGN 340 + S + L S +E E +D F Y Sbjct: 2537 SVGKIVAWDESGQPLRMLGTHTDISDRKSIEEQLIKREEQLRAALDASETGTFRWYIATK 2596 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + L + D+ RS + + Sbjct: 2597 QLEWDDNLNRLFGLP----LGATAHELDEFITLVHPDDRQTVIDACNRSLQEGVDFE-EE 2651 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + W + + +Q G + + +++++ + L S++E+ Sbjct: 2652 FRVVWPDGSIHWLFDKGKLFCDQQGNPCYMAGACVDITQRKQTEQELQESNIILRSVIES 2711 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 T D + + + +G I+ N +++F P+E +L K + + + I+ L Sbjct: 2712 TPDVVFVKDLQGRIVVGNSTFAEVFNQPIETLLGKNNDERWSPDIAAYLKENDQRIIQLG 2771 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578 +T E+ L+ P DIS+ K + L +++ Sbjct: 2772 RSETFEETLPHPQGMRTYLT-TKSPWYDPQGQIIGVIGIARDISDRKAAEAALKRSEQDL 2830 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ D L H++ + RF + N R +E + Sbjct: 2831 RTLFNNSYDAL--FIHDL---------------DGRFLDI-NDRVVELLGTSRENI---- 2868 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + + D + E+ + + + A K + Sbjct: 2869 -LARSVADFAAEEAP--------------IDQLAEIFNNVAQGKSLRFEW 2903 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 73/578 (12%), Positives = 152/578 (26%), Gaps = 65/578 (11%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSEN---TFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103 + F S+ D + DSE V D RF G + ++E Sbjct: 1760 EKFIWSSIEDITDRKTAEKQLQDSETRYRGIVQDQTEFISRFL----PDGTILFVNEAFC 1815 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV-PID 162 + G A +IG V + L N + G + ++ Sbjct: 1816 RYFGVNASDIIGQNYQPVIYEPDRERVMQQVSTLSPDNPITIIENRIIVNGEIRWTQWVN 1875 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDP--------RALGKRLDKKFSHLHEIKKGH 214 ++ F ++ G + + L +R+ ++ L ++ Sbjct: 1876 ---RILFDDTGNFLEYQSVG--RDIQARKEAEIALQQLNEELEQRVYERTEELARSEQDL 1930 Query: 215 SSVEKEKYDIFSQQSPPPHL--------------------------RMKNKVSSLTEYYA 248 ++ YD L R N L Y Sbjct: 1931 RAIFNNVYDALFIYDGDGTLLDVNHRALELHGVTREQLLAATMNDFRTSNNALELIPEYL 1990 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + +T ++ + I++ L S + + R Sbjct: 1991 ERLQQGETVQFEWEGRRLGDRTLFDA--EISMRSLALGNRPVILVGVRDISQKQAAFRER 2048 Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E + +D P+ + N +F+L + S ++I Sbjct: 2049 QQAQIALQESQRFLQTVLDTFPLNVFWKDRQSRFLGCNRTFMLGAELASPEEIIGKTDYD 2108 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + A + + A + +++ + N E Sbjct: 2109 MPWASTEADLYRADD----RQVMDSGQAKLGIIEPQLTADGSTIWLETNKLPLRNLEGEV 2164 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSK 483 + G + D + + ++ + L SI E I ++ + + N A K Sbjct: 2165 IGVLGTYQDISDRKRAEAQLAQQEQFLRSIYEGAEMPIFVVEVLPDNQFRYAGWNLASEK 2224 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + G D+L K L + L ++ ++ Sbjct: 2225 MSGLRAVDVLGKHPVEVLGEEIGQHFCQNYCRCLETGKA--IQYEEHLDLPNG-VVWTLT 2281 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577 + L S T DIS+ K+ + L ++ + Sbjct: 2282 TLNPLKNSEGNIYRIVGTAVDISDRKEAEQALEESRNM 2319 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 67/579 (11%), Positives = 164/579 (28%), Gaps = 37/579 (6%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97 +++KE + E + + +F+ + + F + D G L + Sbjct: 1896 QARKEAEIALQQLNEELEQRVYERTEELARSEQDLRAIFNNVYDAL-FIY--DGDGTLLD 1952 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK-TTLWPIEGT 155 ++ + G +++ + D + ++ + L++ T + + T Sbjct: 1953 VNHRALELHGVTREQLLAATMNDFRTSNNALELIPEYLERLQQGETVQFEWEGRRLGDRT 2012 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGH 214 I + +L + +R G R R + + + + + + Sbjct: 2013 LFDAEISMRSLALGNRPVILVGVRDISQKQAAFRERQQAQIALQESQRFLQTVLDTFPLN 2072 Query: 215 SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKD----DVLKTEKYPLLTSEES 267 + + L ++ T+Y D+ + + ++ S ++ Sbjct: 2073 VFWKDRQSRFLGCNRTFMLGAELASPEEIIGKTDYDMPWASTEADLYRADDRQVMDSGQA 2132 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTP 323 L E T + + + L+N E L + A + E Sbjct: 2133 KLGIIEPQLTADGSTIWLETNKLPLRNLEGEVIGVLGTYQDISDRKRAEAQLAQQEQFLR 2192 Query: 324 ETVDKCPIPFFV-----YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + +P FV + N + ++ ++VD + P Sbjct: 2193 SIYEGAEMPIFVVEVLPDNQFRYAGWNLASEKMSGLRAVDVLGK---------HPVEVLG 2243 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF-EKANQFPENMPQNGIEPED 437 I R A + + N + T N G + Sbjct: 2244 EEIGQHFCQNYCRCLETGKAIQYEEHLDLPNGVVWTLTTLNPLKNSEGNIYRIVGTAVDI 2303 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D + ++ +E +L+ + +R+ L N A + + DI+ K Sbjct: 2304 SDRKEAEQALEESRNMFKLVLDTIPQRVFWKDRQSRFLGCNPAFANDYQLTHADIVGKTD 2363 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553 + +++ Q L + + + +R L + Sbjct: 2364 LELPWAKWGDLYRADDARVMNTRTPQ-LNYEEPTNNLAGENIWIRSSKIPLTNTQGEVVG 2422 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 D++E KQ + L +++ + L + Sbjct: 2423 VLGCYDDVTERKQAEQALEESEERLRLALKSANQGLYDL 2461 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 83/283 (29%), Gaps = 12/283 (4%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + ++D+ I + G + YAN F + +Y + I Sbjct: 1141 AERTKKLQISQQELSDLKYSIDQSAIVAITDTQGKITYANDHFCEVFQYNREELIGQ--- 1197 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + L + + + + + + ++ Sbjct: 1198 -THHLVNSGYHSPAFFQELWTTIGQGKVWKGEIKNQA---KDGSHYWVDTVIVPFLDEAG 1253 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + I E + + ++ + E + GIA+ + G ++ N+ + Sbjct: 1254 KPFQYMAIRFEITQRKQAEIALQESEARFRVFFEHAAVGIALASMTGQFITVNQKFCDIL 1313 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 Y ++ K F + Y +++S ++ ++ ++ Sbjct: 1314 DYQESELRGKTFQEITYPDDLPDTKTYAQQLVSGEVNA-YSVEKRYVKRDGQITWSNTTA 1372 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + ++ + + DI + K + KL +++ + Sbjct: 1373 SLVRDATGTPQYFVGVIEDIEQRKIAEQKLQASERRYATLTEL 1415 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 15/168 (8%), Positives = 50/168 (29%), Gaps = 6/168 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G L +++ +G + + + +++ + + + + + + + Sbjct: 2972 DGTLVDVNPAYAAILGRTVEETLNLTYWEITPETYAEAEAAQLESMAKTGRYAFEKEYIR 3031 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ VP+ L+ L + R + + K + + + Sbjct: 3032 KDGSL--VPVALSGLIV---ERNGEQYIWSCV-EDISQRKQAEVALKEANNQLEQRVLER 3085 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 KE + +Q M +++ + +L+ Sbjct: 3086 TAQLQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQRSPQ 3133 >gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1290 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 112/677 (16%), Positives = 230/677 (33%), Gaps = 44/677 (6%) Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE----------IKKGH 214 A+P+ + G G +L ++ + + + Sbjct: 492 AIPLCDPDGNVRGV--IGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDWKLTSNI 549 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + +E +I+ Q + + ++ E LL + Sbjct: 550 NVWSQELEEIYGLQPGEFGGTFAD---WAKHVHPDDLARVEVELRELLNTGSKEFFSDFR 606 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCP 330 + + + ++ + + A + E + Sbjct: 607 IIRQDGSICWLQSRARVFYDDHGQPLRMVGVNVDVTERKQAEAALQQSEARLKRLLQSSI 666 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 I + +AN +FL + Y D + + + + + Sbjct: 667 IGIIEADPERINFANDAFLKIVGYTHEDLLTGKL----RWQDMTPPEYSELDQAKVEEVI 722 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + I+ + + A + + + + + ++ Sbjct: 723 NSGFCIPFEKEYIRKDGSRVPIL----LGAARLSSSPLTWVCFILDLTERKQAQAALQQS 778 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + ++ + I G N+ G +E + L + Sbjct: 779 ELMFRTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTI 838 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK- 565 + L +E + + L + + + DI + K Sbjct: 839 EQWQDSLDTGKDYDIEYRLR-RAADGEYRWHLGRAFPLRDENGRILKWFGSCTDIHDQKL 897 Query: 566 ------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 Q + A+ E+ + K DFLA VSHE+R+PL I+G+++++K+++ L Sbjct: 898 AIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL- 956 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + I+R+ L +++DLLD+S+I GK++L+ V L + A+ V+L A Sbjct: 957 --KTNQALEVIERNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTA 1014 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 K I I+T +++ R+ D ++Q+ N+L+NA+ FTP GGQI +S + Sbjct: 1015 ESKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERV-GSLAHI 1073 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798 +VRDTG G++ L + F Q + G GLGL + + +V+ + G + S Sbjct: 1074 QVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGE 1133 Query: 799 AKGTLIEIIFPLYDTSH 815 GT + PL S Sbjct: 1134 GLGTTFTVKLPLIAVSQ 1150 Score = 122 bits (305), Expect = 4e-25, Method: Composition-based stats. Identities = 52/542 (9%), Positives = 158/542 (29%), Gaps = 56/542 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143 W D+ G + +S +L + +G ++ + S ++P I L++Q + Sbjct: 136 IWIFDSEGKTEYVSPQLAQILGYSVERI-----GEFSIFNFLEPQARLEIEQWLEQQQKY 190 Query: 144 YGKT------TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 +T L +G +L+V + L++ I ++R FSG ++ +A Sbjct: 191 NHQTKQQFDLRLQRRDGASLWVIVSLSS--ILDKHRRFSGA--VAMLTDITEHKHEQAEP 246 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------- 249 ++ + +I + K + + ++ H Sbjct: 247 DLERQRLRAILDILPMGVVISDAKGQLLEINPGVKAIWGEDAPLLDNTSQYHQYKGWWPD 306 Query: 250 ---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + L + E+ + E+ D T + + T + + + ++ Sbjct: 307 TGQPLTAAEWTLARTLATGEAIIGEEIDIATFDGKRKTILNSAVPIYDATGAIVNAVTVN 366 Query: 307 NHPSLSAYFDEGENLTPET-----------VDKCPIPFFVYSHG--NLFYANPSFLLLTK 353 + + + ++ P ++ + N + + + Sbjct: 367 VDITERKRVEAALRQSEALAKARAEELETIMETVPAAVWIAHDPLCHSMSVNRAAYDMMR 426 Query: 354 YKSVDDI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRE 408 + +GG K + + + + ++ + A + Sbjct: 427 VPPGSVMTATPASGGYPFPFKIQKNGQDIPLNELAMQQAGLTGQEVEAEVEFFFSPED-- 484 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + G + + + ++ + L ++ G Sbjct: 485 -VRHIYGKAIPLCDPDGNVRGVIGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDW 543 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I ++ + +++G + + + + + + L E+L+ ++ Sbjct: 544 KLTSNINVWSQELEEIYGLQPGEFGGTFADWAKHVHPDDLARVEVELRELLNTGSKEFFS 603 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 ++ + L+ + D++E KQ + L ++ ++ Sbjct: 604 -DFRIIRQDGSICWLQSRARVFYDDHGQPLRMVGVNVDVTERKQAEAALQQSEARLKRLL 662 Query: 583 SH 584 Sbjct: 663 QS 664 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 101/312 (32%), Gaps = 26/312 (8%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 A + + + ++ +++ G Y +P + Y SV+ I Sbjct: 109 TAREVSEAKLGKLKVNYRQLLETAYEGIWIFDSEGKTEYVSPQLAQILGY-SVERIGEFS 167 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + L +L + + + L + + + L + ++ Sbjct: 168 IFNFLEPQARL---EIEQWLEQQQKYNHQTKQQFDLRLQRRDGAS-LWVIVSLSSILDKH 223 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + + + + ++E +L +IL+ G+ I + +G +L N V + Sbjct: 224 RRFSGAVAMLTDITEHKHEQAEPDLERQRLRAILDILPMGVVISDAKGQLLEINPGVKAI 283 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKITLGSTKEEKL 538 +G + + P L L+ + + +T + K Sbjct: 284 WGEDAPLLDNTSQYHQYKGWWPDTGQPLTAAEWTLARTLATGEA-IIGEEIDIATFDGKR 342 Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV-- 592 ++ + ++ + DI+E K+ + L ++ +A+ + + V Sbjct: 343 KTILNSAVPIYDATGAIVNAVTVNVDITERKRVEAALRQSEALAKARAEELETIMETVPA 402 Query: 593 ----SHEIRTPL 600 +H+ PL Sbjct: 403 AVWIAHD---PL 411 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 37/332 (11%), Positives = 92/332 (27%), Gaps = 29/332 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPN-NHIGDLLKRQNTWY 144 D + ++ K +G ++ G R D++ + + + + +++ Sbjct: 671 EADPE-RINFANDAFLKIVGYTHEDLLTGKLRWQDMTPPEYSELDQAKVEEVINSGFCIP 729 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G+ VPI L A + S + +A ++ + F Sbjct: 730 FEKEYIRKDGS--RVPILLGAARLSSSP-----LTWVCFILDLTERKQAQAALQQSELMF 782 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTEKY 259 L + + + ++ + + H DD + Sbjct: 783 RTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTIEQWQ 842 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSLS 312 L + + E + L++ + ++ Sbjct: 843 DSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGRILKWFGSCTDIHDQKLAIEER 902 Query: 313 AYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANP--SFLLLTKYKSVDDIEIAGGL 366 A E E +++ + SH NP + L K + +D ++ L Sbjct: 903 AQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQAL 962 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + KL + + R R ++ + Sbjct: 963 EVIERNAKLQARLIDDLLDVSRILRGKLSLNV 994 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 4/159 (2%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F W +GY + ++ G + G ++ + Sbjct: 782 FRTLADTMPQMF-WITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTIEQ 840 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 Y Y A P+ N + FG Sbjct: 841 WQDSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGRI--LKWFGSCTDIHDQKLA 898 Query: 194 -RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + +++ + E+++ + + + + P Sbjct: 899 IEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSP 937 >gi|171911480|ref|ZP_02926950.1| PAS/PAC sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 1778 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 115/752 (15%), Positives = 255/752 (33%), Gaps = 37/752 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G + ++ + G A +++G + + + I + L+ + +T Sbjct: 896 DLAGRVLSWNKGAERLFGYQAREIVGRPIMTLIPDDRFEEEQVILENLRGGSRLEHYETV 955 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT +V + L PI + G I A +R ++ + + Sbjct: 956 RRRKDGT--HVDVSLTVSPIRNEQGVIVGASK--IARDITQKKQDEAELRRSERLYRAIG 1011 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT--- 263 E + L + + + A + + + Sbjct: 1012 ESMNFGIWICDAAGLNQYASDSLLKLVGMTQAEFAGEGWMKALHPEDAEAVRQAWRRCVT 1071 Query: 264 -SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEG 318 + + ++ F ++ + +++ S +++ S Sbjct: 1072 GPDTTFWESEQRFRGMDGAWHPVLARGVPVRDESGRLQQWVGINLDISELKKTEEALRRS 1131 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + G N ++ +T + + Sbjct: 1132 EAHLTAVFQQAGSGIAQTDLEGRYVMVNDAYCEITGRTREELLGQKVHE----ITHPDDR 1187 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + D R + + + I + Sbjct: 1188 VHYGDAHEALAGDGPAFIMENRFVR---ADGVEVWVRSSVVGLRDSQERLSGTLSITQDI 1244 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++R + + QL + + +A ++R NR + + V ++ +P Sbjct: 1245 TESRHAEDALMASEQQLRLVTDHAPVYLAQVDRHQCYKFANRPYAAQYELEVPQLVGRPM 1304 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552 + + + L+ +L + + + ++ + + + + Sbjct: 1305 REVMGEAAYEAARGCVEAALAGELVEFEMQMHFPSSHDELGDRWIHSVFMPEWQSDQAEV 1364 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + L D++ KQ + L A+ A + K DFLAR+SHE+RTPL+ ++ + Sbjct: 1365 TGFVLVQTDVTNRKQSELDLEQARDQALEAVRAKDDFLARLSHELRTPLSPVLLLA---S 1421 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 P + I ++ +L +++DLLD+++I GK+ + + V + + +A Sbjct: 1422 EGASNPEVPESVQADFDTIRKNVDLEARLIDDLLDLTRITRGKLAMDLQGVDVHVVLRDA 1481 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + V+ A K +++ + + D ++Q+ N+L NA+ FTP G I++ST Sbjct: 1482 LDTVRQDAEAKSLVLTLALHATSRLVWGDKVRLQQVFWNLLKNAVKFTPEYGAIVVSTAL 1541 Query: 732 TSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS---QQIRGEGTGLGLPLAKAMVDA 787 V++RV D G+GMT E ++ + F Q ++ R G GLGL + + +V+ Sbjct: 1542 GPEPGTVMIRVSDNGMGMTLEEQQRVFEAFAQGEHAMQGGSHRYGGLGLGLTITRMLVEL 1601 Query: 788 NMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818 + G+ S GT I PL + + Sbjct: 1602 HEGRIQAISEGRGHGTTFVITLPLMKAAAAAE 1633 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 47/519 (9%), Positives = 142/519 (27%), Gaps = 25/519 (4%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAF----KMIG--MRLCDVSDILHIDPNNHIGDLLKRQ 140 + ++ G+L ++ + G + G + + + + L + + Sbjct: 639 YTLNEDGWLTFYNDAARELWGRAPELGRVRWCGSYRMWSLDGQFIPHEQSPMVAALQEAR 698 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + + +GT + L++ P++ + G + V+ +AL + Sbjct: 699 PARGAEVVVERPDGTQR--WVALSSDPLHDARGKCRGLINVA-LDVSDERRTQKALAQSE 755 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 S + ++ ++ + L M + +++ Sbjct: 756 AFLQSVISSTADCIMVMDPLGGLQWTSANGIRMLEMDEASLPTGRSWLDMWQDDTSQRVA 815 Query: 261 LLTSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 +++ + F + + +LS + + Sbjct: 816 QAALRQANAGQVGRFRGFCPTFAGTPKWWDVMVTPIPARDGGAARFLSVARDVTERTNAE 875 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + V+ G + N L Y++ + + + Sbjct: 876 HALSRLAAIVESSDDAIISNDLAGRVLSWNKGAERLFGYQAREIVGRPIMT-------LI 928 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D+ + ++ + R + + ++ N+ + + I Sbjct: 929 PDDRFEEEQVILENLRGGSRLEHYETVRRRKDGTHVDVSLTVSPIRNEQGVIVGASKIAR 988 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + ++ ++ +I E+ + GI I + G+ + ++ KL G + + Sbjct: 989 DITQKKQDEAELRRSERLYRAIGESMNFGIWICDAAGLNQYASDSLLKLVGMTQAEFAGE 1048 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + L + ++ E + + + S Sbjct: 1049 GWMKALHPEDAEAVRQAWRRCVTGPDTTFWESEQRFRGMDGAWHPVLARGVPVRDESGRL 1108 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + DISE K+ + L ++ +A Sbjct: 1109 QQWVGINLDISELKKTEEALRRSEAHLTAVFQQAGSGIA 1147 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 41/488 (8%), Positives = 122/488 (25%), Gaps = 30/488 (6%) Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 R + + D + + + + Sbjct: 541 ERFIQMIHKDDVARVRRAMDAALVDPAGNFEQDYRVVSPQGQVRWVTARGRVQRDSTGKP 600 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHL 234 F G I + +++ L + ++ ++ + F + Sbjct: 601 ERFPGVII--DITGRKQAEEDLEGSEQRHRKLLSLLPMACYTLNEDGWLTFYNDAARELW 658 Query: 235 RMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + +++ L ++ L + + + Q Sbjct: 659 GRAPELGRVRWCGSYRMWSLDGQFIPHEQSPMVAALQEARPARGAEVVVERPDGTQRWVA 718 Query: 287 QYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342 L + + L + + E + V Sbjct: 719 LSSDPLHDARGKCRGLINVALDVSDERRTQKALAQSEAFLQSVISSTADCIMVMDPLGGL 778 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + + ++ E + D + R R Sbjct: 779 QWTSA----NGIRMLEMDEASLPTGRSWLDMWQDDTSQRVAQAALRQANAGQVGRFRGFC 834 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + + + + + + +L +I+E++ Sbjct: 835 PTFAGTPKWW-DVMVTPIPARDGGAARFLSVARDVTERTNAEHAL----SRLAAIVESSD 889 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 D I + G +LS N+ +LFGY +I+ +P + + L + Sbjct: 890 DAIISNDLAGRVLSWNKGAERLFGYQAREIVGRPIMTLIPDDRFEEEQVILENLR--GGS 947 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIA 578 + T+ K+ + + + + + + DI++ KQ++ +L ++++ Sbjct: 948 RLEHYETVRRRKDGTHVDVSLTVSPIRNEQGVIVGASKIARDITQKKQDEAELRRSERLY 1007 Query: 579 EKESSHKS 586 + Sbjct: 1008 RAIGESMN 1015 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 37/387 (9%), Positives = 106/387 (27%), Gaps = 24/387 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NT-- 142 W DA G + S+ L K +G + G + +T Sbjct: 1018 IWICDAAGLNQYASDSLLKLVGMTQAEFAGEGWMKALHPEDAEAVRQAWRRCVTGPDTTF 1077 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W + ++G + P+ +P+ + + GI +R + Sbjct: 1078 WESEQRFRGMDG--AWHPVLARGVPVRDESGRLQ--QWVGINLDISELKKTEEALRRSEA 1133 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + + + + + H DD + Sbjct: 1134 HLTAVFQQAGSGIAQTDLEGRYVMVNDAYCEITGRTREELLGQKVHEITHPDDRVHYGDA 1193 Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + + F + + + L+++ + LS + S + ++ Sbjct: 1194 HEALAGDGPAFIMENRFVRADGVEVWVRSSVVGLRDSQERLSGTLSITQDITESRHAEDA 1253 Query: 319 ENLTPETVDKCPI--PFFVYSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + P ++ +AN + + + + + + Sbjct: 1254 LMASEQQLRLVTDHAPVYLAQVDRHQCYKFANRPYAAQYELEVPQLVGRP-----MREVM 1308 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA--NQFPENMPQN 431 + A + + + ++H + E F + E Sbjct: 1309 GEAAYEAARGCVEAALAGELVEFEMQMHFPSSHDELGDRWIHSVFMPEWQSDQAEVTGFV 1368 Query: 432 GIEPEDVDTRINKRKMEIEVMQ-LCSI 457 ++ + + + ++ +E Q L ++ Sbjct: 1369 LVQTDVTNRKQSELDLEQARDQALEAV 1395 Score = 95.1 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 61/569 (10%), Positives = 139/569 (24%), Gaps = 87/569 (15%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYG-KTTLWPI 152 ++ T+G +G DV + D +L + TW Sbjct: 65 YFFCNDAYLPTLGLKKDWALGRPASDVWAEVWNDAGPRAESVLHTGRATWDECLLLYLER 124 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGF--------------RGFGIVHVNRVDNDPRA--- 195 G + P+ G R ++ + Sbjct: 125 NGYPEETYHTFSYSPVPDDAGGVGGMLCVVTEETERVIGERRLAVLQDLAESLAAVSGSD 184 Query: 196 --------------------------------LGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 G+ + + + + + D Sbjct: 185 ALMEELGGCLQRHRVDMPFSLVYLFDQRSSNGAGQAVLRSLTGIPRGAPLAPATLSCGPD 244 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQED-------- 274 SP P RM + + H +D P P ++ Sbjct: 245 DEWGGSPWPVARMLEEGEPVEVSVGHLEDLPSGPHSSPRAAVVLPLFPHGQEEPPAGFLV 304 Query: 275 ---------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDE 317 F + Q + +E E L + A E Sbjct: 305 TGVNPCRPLDGPYRGFLELVAGQISAGLATAGAFEMERERAESLLELDRVRRESAAQLRE 364 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E T V+ + + + NL + LT + G Sbjct: 365 SEERTRLAVEAGKVGVWDW---NLAAGTVGWSELTHRIFGVEPGGFDGTFDGFLGLVHPV 421 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + R+ + L + + E + + +G + Sbjct: 422 DRVRVAAEVNRAHAGDGRFNCELRALPPSGE-VRWIECHGQTAFSPQGGPERMHGTVLDI 480 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + + ++L + L A G + ++ + +++LF V + P Sbjct: 481 TERKRGEELLREARLRLETTLFAAEIGTWNWDIRNDQVTADENMARLFFVDVREQESPPM 540 Query: 498 TVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 F++ + + + D E+ + + ++ + + S+ Sbjct: 541 ERFIQMIHKDDVARVRRAMDAALVDPAGNFEQDYRVVSPQGQVRWVTARGRVQRDSTGKP 600 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + DI+ KQ + L +++ K Sbjct: 601 ERFPGVIIDITGRKQAEEDLEGSEQRHRK 629 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 39/390 (10%), Positives = 95/390 (24%), Gaps = 40/390 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGK 146 D G +++ + G +++G ++ +++ + L + + Sbjct: 1148 QTDLEGRYVMVNDAYCEITGRTREELLGQKVHEITHPDDRVHYGDAHEALAGDGPAFIME 1207 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + V + + + + SG I +++ Sbjct: 1208 NRFVRADG--VEVWVRSSVVGLRDSQERLSGT--LSITQDITESRHAEDALMASEQQLRL 1263 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + P +Y L + Sbjct: 1264 VTDHAPVYLAQVDRHQCYKFANRP------------------------YAAQYELEVPQL 1299 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 P +E + + +H L + + Sbjct: 1300 VGRPMREVMGEAAYEAARGCVEAALAGELVEFEMQMHFPSSHDELGDRWIHSVFMPEWQS 1359 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 D+ + FV ++ S L L + +E L + PV+L Sbjct: 1360 DQAEVTGFVLVQTDVTNRKQSELDL-EQARDQALEAVRAKDDFLARLSHELRTPLSPVLL 1418 Query: 387 YRSDRTCIA-----ASARLHTIQWNRENSL-----AMTFIPFEKANQFPENMPQNGIEPE 436 S+ A TI+ N + + + + + Sbjct: 1419 LASEGASNPEVPESVQADFDTIRKNVDLEARLIDDLLDLTRITRGKLAMDLQGVDVHVVL 1478 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ E + + L L ATS + Sbjct: 1479 RDALDTVRQDAEAKSLVLTLALHATSRLVW 1508 >gi|298244388|ref|ZP_06968194.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551869|gb|EFH85734.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1349 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 105/774 (13%), Positives = 254/774 (32%), Gaps = 50/774 (6%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 TD +++ + SE + + W +G + +++ +G M Sbjct: 605 TTDIDEQKQAEQRSKASEENWRVLAETVP-QMVWTTRPNGQHEYVNQRWCDYMGVTVEHM 663 Query: 114 IGMRLCDV--SDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 R + + + L + + + T Y A+P+ Sbjct: 664 QSDRWAPLPFIHPDDREGTRALWQHALDTGGMYEHEERFRNSQ-TGAYRWFLARAMPVRD 722 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS- 229 + + FG + K ++ + L E + Sbjct: 723 GAGQI--LKWFGTITDIEDQKRIEQQLKESEENWRVLAETVPQLVWASSPDGRVEYWNQR 780 Query: 230 --PPPHLRMKNKVSSLTEYYAHKDDVLKTE--KYPLLTSEESSLPEQEDFHTINLNQYTK 285 ++ + + H D+ T + +L + E Sbjct: 781 WYTYTGSAPEHALGHEWSQFLHPDEYQHTLMVWHHVLETGRPYEIEYRLKEGQTGAYRWF 840 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGN 340 +++++ + ++ ++ + + + P ++ G+ Sbjct: 841 LVRGMPVRDDTSQIVKWFGTCTDIEDQKQAEQKIKESEQYWRVLAETVPQFVWIGQPGGS 900 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 Y N + + + + ++ G L L D+ + + T Sbjct: 901 KEYYNQRWFD-YAHAAFEQLQGDGWLEFL-----HPDDYERTQALGRHARETGEPYEIEN 954 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + G + + + + + ++ ++ + Sbjct: 955 RLKDGKTGTYRWFLTRGVPVRDDTGQIVKWFGTVTDIDEQKRTEEALRQSQERVNILMNS 1014 Query: 461 TSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEIL 517 + GI + EG I+ N ++ GY +D+ + + + E++ Sbjct: 1015 SIIGIFL--AEGEQIVDANDTYLRMTGYTRDDLRARSISWMRMTPPEYLARTQQARQELV 1072 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKK 576 EK + K+ L + + + L + D S K+ + + Sbjct: 1073 VQQYGTPYEKEYVC--KDGSRLPVVVGVVALRRDPLHTIGFVLDNSARKELEQR------ 1124 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 K DF++ SHE+R PL A+ ++ + +R + ++ Sbjct: 1125 --------KDDFISMASHELRNPLAALKMQTQ-LVQKRLERQSLHEAATALSRVEGPVKQ 1175 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + ++ +LLD+SKI++GK+ E V LD + E +Q + I +R + +++ Sbjct: 1176 LERLIGELLDVSKIQAGKLEYVRETVDLDALLHEVADTMQQLSTTHIIAVRGAVPHSL-- 1233 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D + Q+ +N++SNAI ++P + + + + + V D G+G+ + +K Sbjct: 1234 -VGDKDRLGQVFINLISNAIKYSPGAETVEMDLDASPEAAI-IGVHDHGLGIPREQCDKI 1291 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + +Q G G+GL + +V + G + ST +G+ + PL Sbjct: 1292 FERFYRAAGPKQKAIPGLGMGLYIVAEIVKRHGGTITVDSTVGEGSTFTVTLPL 1345 Score = 181 bits (460), Expect = 4e-43, Method: Composition-based stats. Identities = 44/510 (8%), Positives = 112/510 (21%), Gaps = 27/510 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 F W + G + + + G + G ++ + Sbjct: 508 FVWIMHPDGSAEYANPRWCEYTGMTSQHYQGDGWLQAIHPDDRQRVLAGWQSAVQAGRPY 567 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G+ T Y P + FG K ++ Sbjct: 568 EGEQ-RLRNSTTGDYRWFLARGAPFKDAQGTILKY--FGTTTDIDEQKQAEQRSKASEEN 624 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKT 256 + L E + ++ + L + + + Sbjct: 625 WRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLPFIHPDDREGTRA 684 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + E+ ++ +++ + + ++ + Sbjct: 685 LWQHALDTGGMYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTITDIEDQKRIE 744 Query: 317 EGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + E + P + S G + Y N + T + Sbjct: 745 QQLKESEENWRVLAETVPQLVWASSPDGRVEYWNQRWYTYTGSAPEHALGHE------WS 798 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 D ++ + T + + + + Sbjct: 799 QFLHPDEYQHTLMVWHHVLETGRPYEIEYRLKEGQTGAYRWFLVRGMPVRDDTSQIVKWF 858 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + D + ++K++ + E + I G N+ E Sbjct: 859 GTCTDIEDQKQAEQKIKESEQYWRVLAETVPQFVWIGQPGGSKEYYNQRWFDYAHAAFEQ 918 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + FL + +E K + Sbjct: 919 LQGDGWLEFLHPDDYERTQALGRHARETGEPYEIENRL-KDGKTGTYRWFLTRGVPVRDD 977 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKI 577 + + T+ DI E K+ + L +++ Sbjct: 978 TGQIVKWFGTVTDIDEQKRTEEALRQSQER 1007 Score = 170 bits (432), Expect = 7e-40, Method: Composition-based stats. Identities = 47/514 (9%), Positives = 113/514 (21%), Gaps = 25/514 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W GY+ ++ G + G + ++ + Sbjct: 268 LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQGDGWMQCTHPEDRQRVLETWQRAVQTGEPY 327 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L T Y + A P + G A + L Sbjct: 328 ETEQRLRH-GTTGEYRWFLMQATPYTDAQGTILKY--VGTCTDIHDKKRAEAELRALIDA 384 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L + E + L + L Sbjct: 385 IPQLVWMLG--PDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAIHPDDYQHTLMLWRHALE 442 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E E + +++ + + ++ + + Sbjct: 443 TGEPFEIEYRLKNGQTGGYRWFLARALPVRDEAGQILKWFGTCTDIHEKKQIE---DDIR 499 Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 VD P ++ + G+ YANP + T S + G L + + + Sbjct: 500 ALVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTS-QHYQGDGWLQAIHPDDRQRVLAGWQ 558 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + RL + + G + + + Sbjct: 559 SAVQA---GRPYEGEQRLRNSTTGD--YRWFLARGAPFKDAQGTILKYFGTTTDIDEQKQ 613 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-- 500 +++ + + E + G N+ G VE + + Sbjct: 614 AEQRSKASEENWRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLPF 673 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YS 555 + + L E + + + + Sbjct: 674 IHPDDREGTRALWQHALDTG--GMYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWF 731 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T+ DI + K+ + +L +++ + + Sbjct: 732 GTITDIEDQKRIEQQLKESEENWRVLAETVPQLV 765 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 47/508 (9%), Positives = 117/508 (23%), Gaps = 32/508 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR---QNTWYGK 146 G + +I+ ++IG L + + + R T + Sbjct: 152 PEGIVLDINAVPLDDAQVPREEVIGKPLAETPWWSFAPASQEQLRAAIARANAGETVCFE 211 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P EG + + + P + GI L Sbjct: 212 ALVRPREG--MLLSFESVITPHMDADHHVEYLVIAGI--DVTARKRAERDIHALIDAIPQ 267 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L + V+ + + + + + + E Sbjct: 268 LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQGDGW--MQCTHPEDRQRVLETWQRAVQTGE 325 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 EQ H + +Y+ + + Sbjct: 326 PYETEQRLRHGTTGEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKKRAEAE---LRALI 382 Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D P + + G+ Y N + T S + + G L + ++ Sbjct: 383 DAIPQLVWMLGPDGSSEYGNQRWCDYTNM-SFEQYQGDGWLQAIHPDDYQH-----TLML 436 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + T ++ + + G + + + + Sbjct: 437 WRHALETGEPFEIEYRLKNGQTGGYRWFLARALPVRDEAGQILKWFGTCTDIHEKKQIE- 495 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + ++++A + I++ +G N + G + + + + Sbjct: 496 ------DDIRALVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTSQHYQGDGWLQAIHPDD 549 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561 + + E+ ST + Y T DI Sbjct: 550 RQRVLAGWQSAVQAGRPYEGEQRLRNST-TGDYRWFLARGAPFKDAQGTILKYFGTTTDI 608 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589 E KQ + + +++ + + Sbjct: 609 DEQKQAEQRSKASEENWRVLAETVPQMV 636 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 40/496 (8%), Positives = 108/496 (21%), Gaps = 41/496 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + +G ++G + + + K + T Sbjct: 33 VDDTARIVYANTSAQTMLGASREALLGNSFWRGVPQ--LVSPSLYQAVRKTRQTQEPTDV 90 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + P G F + + G+RL Sbjct: 91 EYHS--PVTRTWLHAHLAP------TVGGLTLQFHQMRAPTPHQETFPRGERLCIDDLDG 142 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G + E + P ++ +V + L + Sbjct: 143 LHTRIGI--LTPEGIVLDINAVPLDDAQVPREEVIGKPLAETPWWSFAPASQEQLRAAIA 200 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLT 322 + + ++ + ++ + H + ++ E Sbjct: 201 RANAGETV--CFEALVRPREGMLLSFESVITPHMDADHHVEYLVIAGIDVTARKRAERDI 258 Query: 323 PETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D P + N + T + + + G + + Sbjct: 259 HALIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLTTEEA-QGDGWMQCTHPED---RQRVL 314 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + RL + + G + D + Sbjct: 315 ETWQRAVQTGEPYETEQRLR--HGTTGEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKK 372 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + L ++++A + ++ +G N+ E + + Sbjct: 373 RAEAE-------LRALIDAIPQLVWMLGPDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAI 425 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSL 556 + L E + + + + Sbjct: 426 HPDDYQHTLMLWRHALETGEP--FEIEYRLKNGQTGGYRWFLARALPVRDEAGQILKWFG 483 Query: 557 TMHDISEWKQEKNKLS 572 T DI E KQ ++ + Sbjct: 484 TCTDIHEKKQIEDDIR 499 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 37/261 (14%), Positives = 77/261 (29%), Gaps = 22/261 (8%) Query: 318 GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + +++ P FFV + YAN S + + + P+L Sbjct: 15 SRDTLLSILERLPDALFFVDDTARIVYANTSAQTMLGASREALLGNSFWRGV----PQLV 70 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + V R + + L P + + + Sbjct: 71 SPSLYQAVRKTRQTQEPTDVEYHSPVTR----TWLHAHLAPTVGGLTLQFHQMRAPTPHQ 126 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R + ++ L+ I I+ EGI+L N P E+++ KP Sbjct: 127 ETFPRGERLCIDD--------LDGLHTRIGILTPEGIVLDINAVPLDDAQVPREEVIGKP 178 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + L ++ +T+ L +E LLS +I + Sbjct: 179 LAETPWWSFAPASQEQLRAAIARANAGETVCFEALVRPREGMLLSFESVITPHMDADHHV 238 Query: 554 --YSLTMHDISEWKQEKNKLS 572 + D++ K+ + + Sbjct: 239 EYLVIAGIDVTARKRAERDIH 259 >gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1478 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 106/513 (20%), Positives = 210/513 (40%), Gaps = 30/513 (5%) Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + V + + N + L L+ Y + L A Sbjct: 275 LDNIISSLSDGLIVLNKNIRVESFNEATLFLSGYSPKEL--RDQPLERFFKEDNF---LA 329 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + T S+ ++ N + + Sbjct: 330 HLQANDSQQSGFLGRYETTFFTKT---GTSVPVSVTASVMKNSSDRIQGIVCLVQDISAR 386 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + + + E DG+ + + +G IL N A ++FGY ++L + + Sbjct: 387 KRADEALRRQ----ALMFETIYDGVIVTDLKGHILDWNPAAERIFGYEKTEVLGQTCGMV 442 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTM 558 + + + + + + L + R T E + + + ++ + Sbjct: 443 YQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCETVVVPLRDDLGRPIAAIGVN 502 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E K+ +NKL A++ A + + K+ FLA +SHEIRTP+ ++G SE++ Sbjct: 503 RDVTERKEYENKLVEAREAAVEAARAKAQFLANMSHEIRTPMNGVLGMSELLLTTDL--- 559 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NPR +++ + SG +L ++ND+LD SK+E+G+M L + ++++ ++ + + L Sbjct: 560 -NPRQLDFVKTLQVSGEHLLGVINDILDFSKLEAGEMRLDVDELNINRSLEDVLDLCSPQ 618 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT---- 732 A K + + ++PR ++ D+ ++QI N++SN+I FT SG I +S Sbjct: 619 AEAKDLELALLVDTDVPRRLMGDVGRLRQICTNLVSNSIKFTESGEVVIRVSVHQELEEQ 678 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ VRDTG+G+ + K + F Q+ +S + GTGLGL + K +V+ G+ Sbjct: 679 DKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLAICKQLVEMMGGEI 738 Query: 793 YIFSTPAKGTLIEIIF-----PLYDTSHPHDCI 820 + S G+ P+ + D I Sbjct: 739 GVESQLGVGSTFWFTITFGKVPVGTEENESDRI 771 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 7/137 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ + L +I+ + SDG+ ++N+ + S N A L GY +++ +P F Sbjct: 263 KQLQETTVSKSYLDNIISSLSDGLIVLNKNIRVESFNEATLFLSGYSPKELRDQPLERFF 322 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557 +++ +L S T TK + + + + S Sbjct: 323 KEDN---FLAHLQANDSQQSGFLGRYETTFFTKTGTSVPVSVTASVMKNSSDRIQGIVCL 379 Query: 558 MHDISEWKQEKNKLSHA 574 + DIS K+ L Sbjct: 380 VQDISARKRADEALRRQ 396 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 31/139 (22%), Gaps = 7/139 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146 D G++ + + + G +++G V + LL W + Sbjct: 410 TDLKGHILDWNPAAERIFGYEKTEVLGQTCGMVYQPDEATALTQQMLDSLLHEGR-WTRE 468 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + +P+ G+ + + Sbjct: 469 IEFIRKDGNKGV--CETVVVPLRDDLGRPIAA--IGVNRDVTERKEYENKLVEAREAAVE 524 Query: 207 LHEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 525 AARAKAQFLANMSHEIRTP 543 Score = 44.6 bits (104), Expect = 0.069, Method: Composition-based stats. Identities = 20/224 (8%), Positives = 61/224 (27%), Gaps = 6/224 (2%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 ++ +E G ++ L + + D + +TT + Sbjct: 294 RVESFNEATLFLSGYSPKELRDQPLERFFKEDNFLAHLQANDSQQSGFLGRYETTFFTKT 353 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 GT++ V + + + + + G +V +R F +++ Sbjct: 354 GTSVPVSVTASV--MKNSSDRIQGI--VCLVQDISARKRADEALRRQALMFETIYDGV-I 408 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + ++ D + D+ + L + +E Sbjct: 409 VTDLKGHILDWNPAAERIFGYEKTEVLGQTCGMVYQPDEATALTQQMLDSLLHEGRWTRE 468 Query: 274 -DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 +F + N+ + L+++ + + ++ Sbjct: 469 IEFIRKDGNKGVCETVVVPLRDDLGRPIAAIGVNRDVTERKEYE 512 >gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 719 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 116/515 (22%), Positives = 213/515 (41%), Gaps = 14/515 (2%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 YL+ + +L ++ P+ V G + +AN + + I Sbjct: 60 YLNIDKRKKVEIELQRERDLMGSIMETSPMGILVMDNDGKIIFANDQAARVHGVAREEII 119 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + + R + A H I W + ++ Sbjct: 120 GKQHNDPIWKITAHDGSPFPEERLAFNRVMKIRNAVLDIRHAIHWLDGRKVLLSINASPI 179 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + + + ++ + S+++ I +++ + IL NR Sbjct: 180 ISDDGSIKKVVASVEDITTRKKVEEALKESAYRFRSLVKTAESVIILLSPDKKILEFNRM 239 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +LFG ++L + + N +LS + + LE L EE+++ Sbjct: 240 AEQLFGRTRHEVLGRDYYELFVPERFWPDHNRQFATVLSGNPLRLLENYVLARGGEERMI 299 Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + DI+E K+ + +L A+ AE+ S KS+FLA +SHEIR Sbjct: 300 QWSLSRLLDAKGGALGVLAVGQDITERKRSEVELCEARDAAEEASRAKSEFLANMSHEIR 359 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP++AIIG SE+ N Y + ++ +L I+ND+LDISKIE+ KM L Sbjct: 360 TPISAIIGMSEMTLNTNLTG----EQQGYLVTVKKAAESLLHIINDILDISKIEARKMEL 415 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 E +L E + + +S++++ A EK I +R + ++++ R D + QI +N++ NAI Sbjct: 416 RPEDFNLYEMLEKQLSVLKVQAEEKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAI 475 Query: 717 HFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G + +S + + RV+DTG+G++ + EK + F Q+ R Sbjct: 476 KFTEKG-YVEVSVDHVGSFEEGAVLEFRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHP 534 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 G+GLGL +++ +V+ G S G+ + Sbjct: 535 GSGLGLAISRQLVEMMGGHITFSSREGWGSEFKFT 569 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 19/258 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHIG--DLLKRQN 141 +D G + +++ + G ++IG + D + P + ++K +N Sbjct: 94 MDNDGKIIFANDQAARVHGVAREEIIGKQHNDPIWKITAHDGSPFPEERLAFNRVMKIRN 153 Query: 142 TWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 W ++G V + + A PI S + + V K Sbjct: 154 AVLDIRHAIHW-LDGR--KVLLSINASPIISDDGSIK--KVVASVEDITTRKKVEEALKE 208 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS---LTEYYAHKDDVL 254 +F L + + + I L R +++V + + Sbjct: 209 SAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFGRTRHEVLGRDYYELFVPERFWPD 268 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 ++ + S + + + L + + L+ + Sbjct: 269 HNRQFATVLSGNPLRLLENYVLARGGEERMIQWSLSRLLDAKGGALGVLAVGQDITERKR 328 Query: 315 FDEGENLTPETVDKCPIP 332 + + ++ Sbjct: 329 SEVELCEARDAAEEASRA 346 >gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1037 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 125/747 (16%), Positives = 257/747 (34%), Gaps = 53/747 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150 G ++ E K +G ++ G D ++ + L ++ Sbjct: 163 DGRFLRLNPEWEKVLGYTTQELEGRMFLDFVHPDDVESTVAAVSRLENQEQVLNYVNRFC 222 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-- 208 +G+ Y I+ + P+ G + + A + ++ + Sbjct: 223 CKDGS--YRWIEWRSRPL--------GRQIYAAARDITEHKKVLAKLQESEQSLARTLQA 272 Query: 209 --------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + + R+ + V L A V+ Sbjct: 273 IGDGVISTDMDSRVVQMNPVAEKLCGWDEAEARGRLLSDV--LRIVNADTRAVVDNPLQK 330 Query: 261 LLTSEESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + L + +Y ++++ + + E Sbjct: 331 VFATGHTLGLASHVMLLSRTGEEYHIADSAAPIRDSHGNITGAVLVFRDVTREHAQAERL 390 Query: 320 NLTPETVDKC----PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E +D+ + ++ N Y + + + Y + + G + + Sbjct: 391 RTSEERLDRAMAVKNEGIWDWNLVTNETYFDDRYYTMAGYSPNEFPQHFSGWAERVHPED 450 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L + + + + N + G Sbjct: 451 LQKATSAIEDCIA---GKTETFDIEFRFKHKDGSWIWIQGQGKIMERNPDDSPLRMIGTH 507 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPVEDIL 493 + + ++ + + IL+A D I + EGII N A L P I Sbjct: 508 TDITERKLAEEALLESEEMQRKILQAVPDLIVRTDLEGIITFVNELAYPGLSYIPQASIY 567 Query: 494 RKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + F++ L + Q + +E + I + Sbjct: 568 GRSLFSFIDARDLPRAQENALKRLEKNIGPQ----EYRLNFEEGISIDTEINGAVVYDKE 623 Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + DI++ K++K +L AK+ AE + KS FLA +SHE+RTP I+G + Sbjct: 624 SMPVGMVYVIRDITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQ 683 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ + EY + +S +++D+LD+S +E+G+M++ L EA+ Sbjct: 684 LLQTTTL----DEEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEAL 739 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + A EK + + +++P +++ D VKQI + ++SNA+ FT G + I Sbjct: 740 GSIHDIFDASAREKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKG-VVEI 798 Query: 728 ST---THTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +V + V DTG+G+ +L+ PF Q+ S + +G GLGL + K Sbjct: 799 RLDALCAAKGGDVRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVK 858 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ G I S P +GT + ++ P Sbjct: 859 RLVELMNGNIDIDSLPGEGTTVHVVLP 885 Score = 160 bits (406), Expect = 7e-37, Method: Composition-based stats. Identities = 62/540 (11%), Positives = 157/540 (29%), Gaps = 28/540 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143 + G + + K G + + + D++ + + ++ I LL+ Sbjct: 29 VFTSTPEGRFLTANPAMAKMFGYDTPQEMIDSITDIASEFYAESSDRNKILQLLEVHQQV 88 Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRL 200 + L +G+ ++ + L + + + + GF I + + + L Sbjct: 89 ENFECRLIRRDGS--WLWSSIDVLAMRDESGSITHYHGFITDITEHKQAQDQIEKKSEEL 146 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY- 259 + F+ ++ ++V+ + + + + + H DDV T Sbjct: 147 ELYFNSSLDLLCI-ANVDGRFLRLNPEWEKVLGYTTQELEGRMFLDFVHPDDVESTVAAV 205 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L ++E L F + + + L + H + A E E Sbjct: 206 SRLENQEQVLNYVNRFCCKDGSYRWIEWRSRPLGR--QIYAAARDITEHKKVLAKLQESE 263 Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 T+ + NP L + + L + Sbjct: 264 QSLARTLQAIGDGVISTDMDSRVVQMNPVAEKLCGWDEAEA-RGRLLSDVLRIVNADTRA 322 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 P+ + + ++ + + E + + + + Sbjct: 323 VVDNPLQKVFATGHTLGLASHVMLLSRTGEEYH-IADSAAPIRDSHGNITGAVLVFRDVT 381 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-- 496 ++ +L + ++GI N + + GY + + Sbjct: 382 REHAQAERLRTSEERLDRAMAVKNEGIWDWNLVTNETYFDDRYYTMAGYSPNEFPQHFSG 441 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSS- 552 + + + + ++ +T + K+ + ++ I+++ P S Sbjct: 442 WAERVHPEDLQKATSAIEDCIA-GKTETFDIEFRFKHKDGSWIWIQGQGKIMERNPDDSP 500 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 T DI+E K + L ++++ K D + +RT L II F + Sbjct: 501 LRMIGTHTDITERKLAEEALLESEEMQRKILQAVPDLI------VRTDLEGIITFVNELA 554 Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 91/266 (34%), Gaps = 10/266 (3%) Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 E + K P+ F G ANP+ + Y + ++ ++ + ++ Sbjct: 19 QELLIKAPMGVFTSTPEGRFLTANPAMAKMFGYDTPQEM--IDSITDIASEFYAESSDRN 76 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 K + L + RL + L + ++ +G + + + Sbjct: 77 KILQLLEVHQQVENFECRLIR---RDGSWLWSSIDVLAMRDESGSITHYHGFITDITEHK 133 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++E + +L ++ D + I N +G L N K+ GY +++ + F F+ Sbjct: 134 QAQDQIEKKSEELELYFNSSLDLLCIANVDGRFLRLNPEWEKVLGYTTQELEGRMFLDFV 193 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + ++ + + Q L + K+ + + L DI Sbjct: 194 HPDDVESTVAAVSRLENQ--EQVLNYVNRFCCKDGSYRWIEWRSRPL--GRQIYAAARDI 249 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587 +E K+ KL +++ + D Sbjct: 250 TEHKKVLAKLQESEQSLARTLQAIGD 275 >gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1054 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 124/586 (21%), Positives = 234/586 (39%), Gaps = 35/586 (5%) Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQN---NS 296 + H DD Y + ++ E T + + + Sbjct: 445 PRFWADHIHPDDREWATTYCVNATKNKQDHSFEYRMITADNRTIWLRDLVTVVVENDKAV 504 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV----YSHGNLFYANPSFLLLT 352 K + E + ++ PI + + + AN +F + Sbjct: 505 KLYGVMFDITESKQAEKALRQSEEQFRKMFEEGPIGMVIATPSFPSFSFIKANAAFCQML 564 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y + + G D + ++ + I+ + + + Sbjct: 565 GYTEAELL-QLNGADITYPD----DMPINRELLQKALNGEISFYQMEKRYIRKDGK-LVW 618 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471 N + G + + + + + + + L+ ++D I I++R+ Sbjct: 619 GNLAVSLFHNDEGKVTFFLGKVEDITERKHAEESLR----RFRAALDNSADAIFIVDRQT 674 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 + N+ GY ++L T + + EI+ + + T+ T+ Sbjct: 675 MNFVDMNKIACDSIGYSYNELLSMGPQDIKPYFTKAQLATKFDEIIQSECQGTI--ETVH 732 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ + ++ L F Y L DI+E KQ + L AK+ A+ + KS+FL Sbjct: 733 QRKDGTEFPVENFLQSLKFDEGYLLISSARDITEHKQAEIALIQAKEQADSANRAKSEFL 792 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ A+IGFS+++ ++ + + + Y + I +G +L ++ND+LD+SK Sbjct: 793 ANMSHEIRTPMNAVIGFSDILASK----VTDKKQKTYLDSIQTAGKSLLTLINDILDLSK 848 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 IE+G++++ +EPV+L +E + L EK + +P +L D ++Q+ Sbjct: 849 IEAGRLDIQYEPVNLQLIFTELQQIFSLKMAEKNLEFILETDETLPPVLFLDETRLRQML 908 Query: 709 LNILSNAIHFTPSGGQIIIST--THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762 LN++ NAI FT SG I + T N+ +IL V D+G+G+ + + F Q Sbjct: 909 LNLMGNAIKFTDSG-YIKLCANKGSTENDHSQVDLILAVEDSGIGIPAEQQALIFESFRQ 967 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + GTGLGL + K +V+ G + S P KG+ EI Sbjct: 968 QDGQSTRQYGGTGLGLAITKRLVEMMNGHITVESHPGKGSRFEIAL 1013 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 54/175 (30%), Gaps = 7/175 (4%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GI 473 + IE + + + + + S++ + + + Sbjct: 364 LERQVSERTAELSQRIQEIEQQKIGIQNLAEDLVASQQRYESLVNSIDGVVWEGDANTFQ 423 Query: 474 ILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ ++ GYP + + + + + + Y + E + Sbjct: 424 FQFVSQHTQRILGYPSEDWLKPRFWADHIHPDDREWATTYCVNATKNKQDHSFEYRMI-- 481 Query: 533 TKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSH 584 T + + + LR ++ + + M DI+E KQ + L +++ K Sbjct: 482 TADNRTIWLRDLVTVVVENDKAVKLYGVMFDITESKQAEKALRQSEEQFRKMFEE 536 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 12/118 (10%), Positives = 37/118 (31%), Gaps = 6/118 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW-YGKTTLWPI 152 + + + +G +++ + D++ + N + L + ++ + Sbjct: 553 FIKANAAFCQMLGYTEAELLQLNGADITYPDDMPINRELLQKALNGEISFYQMEKRYIRK 612 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G V +LA ++ + + F G V +R + + Sbjct: 613 DGKL--VWGNLAVSLFHNDEGKVTFFLG--KVEDITERKHAEESLRRFRAALDNSADA 666 >gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1] Length = 1622 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 125/744 (16%), Positives = 255/744 (34%), Gaps = 33/744 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147 DA G + ++ + G ++ G R V+ + + L W G+ Sbjct: 366 TDAEGRIDWVNSQYEANTGYSLDEVRGRRPSLVASGQTPPETYRQMWSRLIAGLPWRGEF 425 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +GT + L+ P++ + G + R + + Sbjct: 426 INQRQDGTIYHDEATLS--PVFDDHGRRIAIVGLHENVTERITAHQELQRRERELNEALA 483 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + E +++ + + Sbjct: 484 QQTAIFDNAPPVLIVADGRLLRFNPACLELLGAQPGQLEGRGVEVIFGGEELHRRFLERV 543 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKE-SFEYLSHRNHPSLSAYFD 316 E+ +E + + + LQ + A Sbjct: 544 EGRLEAGESVREVARLVRRDGTVFEARLSGRLLPLQGYGLACIWVVEDVTEARRSEAAMR 603 Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS-VDDIEIAGGLSTLLDAPK 374 E + + F + L + + + +L + Sbjct: 604 EMNERLILAQEAGRVGVFDLDLARDHLVFSEKLASLYGLPHQPQGLRLMDWMDSLHLEDR 663 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + + + + + G++ Sbjct: 664 PRVQARLDAALAGAATGLQDS-----WRVVRPDGSERWLLCSARIERDAEGRARRLIGVQ 718 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + ++ ++ ++++A + + +G NRA + FG ED L Sbjct: 719 VDVHEQKQLEARLADQLAFQQALVDAIPIPLFHKDGDGRYRGFNRAYEEAFGIRREDFLG 778 Query: 495 KPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPF 550 K FL Q + I + E + E L + + Sbjct: 779 KTVHEADFLNQAERAEFEADARTIRAGGPPIHKEVDLTYADGEIHHTLFWMHGFQRPDGS 838 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 T+ DI++ ++ + +L AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + Sbjct: 839 PGGSIGTLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLA 898 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 P R +Y I ++G +L ++ND+LD S+IE+GK+ + +P LD + Sbjct: 899 LKSGLTP----RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEG 954 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728 +V A K + + A ++P ++ D + QI +N +NAI FT G + + Sbjct: 955 MADVVGYKAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVR 1014 Query: 729 TTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 V VRDTG+G+ ++ + + F Q S R G+GLGL ++K + + Sbjct: 1015 VVERHGRRVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAE 1074 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 G+ S +G+ ++ PL Sbjct: 1075 LMGGEVGAESVLGEGSTFWVMLPL 1098 Score = 89.3 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 46/480 (9%), Positives = 110/480 (22%), Gaps = 44/480 (9%) Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G L + AL S + G + L + Sbjct: 18 RDGQWLRGWAVVLAL---SAVGAWLAVAGVAEWREASRAQEREGLLGHAAEVLMSQTAGS 74 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 +V + ++ N +L + L + Y L S E Sbjct: 75 PLLGAVALLGLSEPTLKAVALGTLPPNAPEALARLAVARGRFLVSGVYVLDASGRVVAHE 134 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET------ 325 + L+ + + ++ ++ L E TP + Sbjct: 135 TPATPALGLDLSHRPYFLQAMRGAVNVYPALGTNSQDRGLYYAAPLYEGDTPASVIVGVV 194 Query: 326 ------------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV------DDIEIAGGLS 367 + + P + S + +A D I Sbjct: 195 LVKMSFEPVETQLQRSGYPMALMSPQGIAFAATRPEWRYAIAPPLTQERIDAIRRQRQFG 254 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L D A R + + P+ Sbjct: 255 ALFDNGVAQALPFRPDAREAVVGGVRYALERRNLEWHDPDGPWQIVMLDDLQALLPGPQR 314 Query: 428 MPQNGIEPEDVD----------TRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILS 476 + + + +E + L + L+++ + I + EG I Sbjct: 315 WQIGVGVFTLLVVLGGMLLDMMRHRARMALAMERFRVLGAALQSSPVAVVITDAEGRIDW 374 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N GY ++++ + ++ TP + L L + ++ Sbjct: 375 VNSQYEANTGYSLDEVRGRRPSLVASGQTPPETYRQMWSRLIAGLPWRG--EFINQRQDG 432 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + +++E +L ++ + + ++ Sbjct: 433 TIYHDEATLSPVFDDHGRRIAIVGLHENVTERITAHQELQRRERELNEALAQQTAIFDNA 492 >gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044] Length = 1005 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 121/533 (22%), Positives = 222/533 (41%), Gaps = 26/533 (4%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356 YL R +E + T + F + + + NP+ + + Sbjct: 480 AQSSYLRSRELVKAMNELNESKIQTEVLLHSMGEGVFGLNKKKKVAFVNPAGEHMVGMRQ 539 Query: 357 VDDIEIAGG-LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 D + L L+ + + + + D + L S + F Sbjct: 540 EDVVGKPIQELFHLMKSDETPYHIKDSAIYKVFEDGRMHTVNNELF--CRKDGTSFNVEF 597 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + + +++ +L +I++ + I + + +G L Sbjct: 598 TCGPLRRED-TIEGVVLVFRDITNRIRAEAEIKETQRRLRAIIDNATSVIYVKDLKGRYL 656 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+ LF E+++ K ++ + ++L T E+ E Sbjct: 657 IANKQYLDLFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDVLEKGKAVTYEETAPLDDGE 716 Query: 536 EKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEK--------------NKLSHAKKIAEK 580 +S++ + + DI+E K+++ L A+K AE+ Sbjct: 717 HTYVSVKFPLYDAEDNIYATCGISTDITERKEQELKQLEFLKQIEQSNQDLEIARKKAEE 776 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHEIRTPL +IG + ++ N + +YAN ID SG ++L+I Sbjct: 777 ANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNTPL----DKSQEKYANRIDLSGKVLLEI 832 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699 +ND+LD SKIE+G++NL P +L+E V E L+Q A EK + + S+A++ P ++ Sbjct: 833 INDILDFSKIEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGLNLEISYAHDTPKHLIG 892 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D ++Q+ +N+ SNAI FT G + I ++ + + V DTG+G+ + + Sbjct: 893 DPTRIRQVIMNLTSNAIKFTQEGS-VAIKVSNPKKAFIRVEVTDTGIGIPQEKKMHIFEK 951 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 F Q S + GTGLGL + K +++ GK S KG+ PL + Sbjct: 952 FSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCESIENKGSTFWFEIPLQN 1004 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 9/192 (4%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 A L + + + F F F + ++ +Q Sbjct: 447 RAELLAEHRSVLPAFTLFFGVFLAIVVFFGVYFAQSSYLRSRELVKAMNELNESKIQTEV 506 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-----QNTPSVMNH 511 +L + +G+ +N++ + N A + G ED++ KP + + + Sbjct: 507 LLHSMGEGVFGLNKKKKVAFVNPAGEHMVGMRQEDVVGKPIQELFHLMKSDETPYHIKDS 566 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568 + ++ T+ K+ ++ L L DI+ + + Sbjct: 567 AIYKVFEDGRMHTVNNELFCR-KDGTSFNVEFTCGPLRREDTIEGVVLVFRDITNRIRAE 625 Query: 569 NKLSHAKKIAEK 580 ++ ++ Sbjct: 626 AEIKETQRRLRA 637 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 29/306 (9%), Positives = 83/306 (27%), Gaps = 19/306 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLKRQNTWY-GK 146 + ++ +G ++G + ++ ++ D ++ I + + Sbjct: 523 KVAFVNPAGEHMVGMRQEDVVGKPIQELFHLMKSDETPYHIKDSAIYKVFEDGRMHTVNN 582 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +GT+ ++ P+ + G + A K ++ Sbjct: 583 ELFCRKDGTSFN--VEFTCGPLRRED-TIEGV--VLVFRDITNRIRAEAEIKETQRRLRA 637 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + V+ K HL + + KD K Sbjct: 638 IIDNATSVIYVKDLKGRYLIANKQYLDLFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDV 697 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E+ E+ ++ ++T L + + + + + Sbjct: 698 LEKGKAVTYEETAPLDDGEHTYVSVKFPLYDAEDNIYATCGISTDITERKEQELKQLEFL 757 Query: 324 ETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + +++ + AN + FL ++ + G+++LL L + Sbjct: 758 KQIEQSNQDLEIARK-KAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNTPLDKSQE 816 Query: 381 IKPVML 386 + Sbjct: 817 KYANRI 822 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 10/152 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D G +++ ++IG ++ D + + D+L++ + T Sbjct: 650 DLKGRYLIANKQYLDLFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDVLEKGKAVTYEET 709 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G + YV + P+Y + GI + F Sbjct: 710 APLDDGEHTYVSVKF---PLYDAEDNI--YATCGISTDITERKEQELKQLE----FLKQI 760 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 E + ++K + + M +++ Sbjct: 761 EQSNQDLEIARKKAEEANIAKSTFLANMSHEI 792 >gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS] Length = 1105 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 127/740 (17%), Positives = 263/740 (35%), Gaps = 48/740 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + +I++ + G + + + V + + ++ Sbjct: 133 DLEGKIVDINQSAIQMYGYSKAEFVTLHANQVICPEYQSRLKEFIQTAQSGKIASAQSVD 192 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT Y I+ L + I+ K +++F L E Sbjct: 193 LRKDGTFFYTEINGTTLEYNGQKHLL------AIIRDVTERKRAENALKESEERFRSLVE 246 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-----DVLKTEKYPLLTS 264 V + ++ L + + + LKT + Sbjct: 247 QAADAIFVHDLEGRFVDVNQSACKSVGYSRSELLNLSVTNLEKGVSLEQLKTVWQHIKVG 306 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E S+ + + + G ++ + + L+ + +E Sbjct: 307 E--SVTLEGTHRHKTGKKIPVEVRLGLIKWDGTQYI--LAAARDITERKRVEEILKKRAI 362 Query: 325 TVDKCPIPFFVYSHGNLF--------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + G+ + + + + Sbjct: 363 EFKMAQE---IANLGSYTINLLTSEQEWSDQIFHILGIDRKEVSPSHENFMQFVPPEDKE 419 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 A I+ + E + + N + G + Sbjct: 420 LLERESQAAFT----GQKTLDAYYRIIRKDGE-VRFLHTGGIVEYNDKKIPVRMYGFTQD 474 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + K+ I+ ILE ++G+ + G++L TNR ++++FGY +++ + Sbjct: 475 ITERKRAEEKLLIQAK----ILENMAEGVNLTTESGLMLLTNRLLTRMFGYDENELIGQH 530 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCY 554 ++ + M I L ++ E K+ I + + Sbjct: 531 VSILNSLSPEENMVFVNHVIADLQTKEIWEGEFNNQKKDGTHFISYAYISALDISGQHYF 590 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+E KQ + L AK+ AE + KS+FLA +SHEIRTP+ A++GFSE++ Sbjct: 591 VTVQEDITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELLSEL- 649 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + N + Y + I +G +L +++D+LD++KIE+G++++ +E V+ E + Sbjct: 650 ---VTNKQQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQI 706 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L +K++ N+P ++ D ++Q+ LN++ NA+ FT G I + Sbjct: 707 FVLKIVDKQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEKG-YIKLGAQKID 765 Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + +++ V DTG+G+ + E + F Q + GTGLGL + + +V+ Sbjct: 766 KMDKSKIDLLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMM 825 Query: 789 MGKFYIFSTPAKGTLIEIIF 808 G + T KG++ I Sbjct: 826 NGDISVTGTVGKGSIFNISL 845 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 33/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%) Query: 334 FVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 V+ + + Y D +E + L + + Sbjct: 1 MVWEADAKTFQFTFVSQQAEPFLGYPCEDWLEPTFWVEHLHPEDRTWAPGFCMEATFKKQ 60 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 D I + + N P + G+ + + ++ ++ Sbjct: 61 D-----HEFEYRMITADNRIIWLRDLVSVIIENDQP--VKICGVMLDITQWKQAEQTLKE 113 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L +I +T+D I + EG I+ N++ +++GY + + + S + Sbjct: 114 NEQNLQAIFNSTTDAFIIADLEGKIVDINQSAIQMYGYSKAEFVTLHANQVICPEYQSRL 173 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQE 567 ++ S + K+ I + + D++E K+ Sbjct: 174 KEFIQTAQSGKIASAQSVDLR---KDGTFFYTEINGTTLEYNGQKHLLAIIRDVTERKRA 230 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEI 596 +N L +++ +D A H++ Sbjct: 231 ENALKESEERFRSLVEQAAD--AIFVHDL 257 >gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1626 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 121/779 (15%), Positives = 268/779 (34%), Gaps = 62/779 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147 D G + ++ + G + +G+ ++ ++ ++L + + Sbjct: 363 DLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQALFAEVLAGKTVLNRVS 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 +G+NL ALPIY + + G + D L L+++ Sbjct: 423 RHQRADGSNLSTSTT--ALPIYDEHGDIVGLSQ--TIRDITAQQDAERHILNLNASLERQ 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEK 258 + + + D +QQ + + + E++ +++++ Sbjct: 479 VAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFCLISGYAREELVGKTH 538 Query: 259 YPLLTSEESSLPEQEDF---------------HTINLNQYTKKQYFGTLQNNSKESFEYL 303 L + E + + + + G++ + + ++ Sbjct: 539 AVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTVIGSVFDEHGQVERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + + + +N + G + N + Y + Sbjct: 599 ALQTDITERKLAQIEKNRIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERMLWYSAE 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--------TCIAASARLHTIQWNREN 409 + I + + + + + R T + Sbjct: 659 EIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHKAREEGSETRTWTYVRKDGS 718 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 L ++ E + GI + + + L E GI N Sbjct: 719 QLPISLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLSKAAEVAKLGIWTWN 778 Query: 470 REGIILSTNRAVSKLFGYPV----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 L N + ++ P + + + + + + + L + D Sbjct: 779 LLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEP 838 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 L + E + + I++ DI+ +Q + L +AK+ A+ ++ Sbjct: 839 IFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANA 898 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ A++G ++++ + Y + +L ++ND Sbjct: 899 AKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSV----QQQGYVTKAQTAAKSLLGLLND 954 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SKI++GK+ L P S++ + + ++ + + + +P +LAD Sbjct: 955 ILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQL 1014 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758 ++QI +N+ NA+ FTP G Q+I+ +E V + D+G+G++ ++E+ Sbjct: 1015 RLQQILINLAGNALKFTPHG-QVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFT 1073 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSH 815 F Q +S R GTGLGL ++K +V+ G+ + S G+ FP+ + Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEA 1132 Score = 97.8 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 50/499 (10%), Positives = 131/499 (26%), Gaps = 45/499 (9%) Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG---------- 154 +G + ++ ++ ++ + T + + G Sbjct: 19 LVGLFFSAVLAWQVSRINAQTISQALEERAQQISENVTNRITLYQYGLRGARGMILTAGE 78 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 ++ + + EF G RGFG + RV + A K + Sbjct: 79 DHISRSMFQNYSLTRDVDEEFPGARGFGFIR--RVPKENEAQFLARVKSMDWPDFHIRQL 136 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + E EKY I + + + + D +++ + + Sbjct: 137 NPNEGEKYLIEYIEPLDRNKAAVGLDIASESHRKEAADRALLSGAVQISAPITLVQATGK 196 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 L + + + + P ++ G +L + Sbjct: 197 PLQSFLILLPVYRSGTVPKTPEERLAQGFGWSYAPLVTTEILTGLSLHQKMTKLM----- 251 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + D+ + + Sbjct: 252 ----------------------LSDVTDEQQPINFFETHANDLSELSDYSYKSTKTIFGR 289 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + ++ + + I + + ++ + + + Sbjct: 290 HWQFEVIAYPAFIKSLHLNKPSLVLFSGCLFSLLLAALIAMWSLSLQRKQQVLAEQARR- 348 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+LE + DGI + G I S N+ +LFG+ + L P + + + + L Sbjct: 349 ASMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQALF 408 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570 + L +++ + LS + + T+ DI+ + + Sbjct: 409 AEVLAGKT-VLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQTIRDITAQQDAERH 467 Query: 571 LSHAKKIAEKESSHKSDFL 589 + + E++ + ++ L Sbjct: 468 ILNLNASLERQVAKRTHAL 486 Score = 84.3 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 36/391 (9%), Positives = 102/391 (26%), Gaps = 33/391 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 D G + +++E G +++G + H + + +K +W+G+ Sbjct: 509 TDLDGVILDVNEHFCLISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEI 568 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + + ++ + + R + + R+ +++ Sbjct: 569 CNRGKDQQLKWFDTVIGS--VFDEHGQVE--RFVALQTDITERKLAQIEKNRIATLLTNV 624 Query: 208 HEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + I + + + T H D + L Sbjct: 625 LDAASEMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSV 684 Query: 264 SEESSLPEQEDFHT----------------INLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + F + +Q ++ N E YL Sbjct: 685 EYGQKIQGFDTFVHKAREEGSETRTWTYVRKDGSQLPISLSVTAMRGNDGEILGYLGIGV 744 Query: 308 HPSLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 S E N + + + + ++ N N + Y + ++ Sbjct: 745 DISQIVAQQEALLTASNHLSKAAEVAKLGIWTWNLLDNSLQWNDRMFAM--YDQPESLKQ 802 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G D+ L R+ + + E + + + Sbjct: 803 QGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRILTTDGE-VRYVQAAAKIERD 861 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + + GI + R ++ + + Sbjct: 862 RQGHVIRVIGINIDITAQRQLEKTLRNAKQE 892 >gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 933 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 108/659 (16%), Positives = 238/659 (36%), Gaps = 68/659 (10%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK 250 L K + I + + + + T H Sbjct: 38 VQLEATNQKLQQAILNSANYTIISTTPDGIILTFNAAAQRWLGYTAEEVIGKTTPEIVHD 97 Query: 251 DDVLKTEKYPLLTSEE-------------SSLPEQEDFHTI----NLNQYTKKQYFGTLQ 293 + + L + L + E+ + +++ L Sbjct: 98 KNEVVKVAQELSQELGVTIEPGFEVFVAKARLGQVEEREWTYIRKDGSRFPVLLSVTPLY 157 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSF 348 + + +L + + + P+ F G +AN Sbjct: 158 DAEENITGFLGIGSDITARKLAEAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERA 217 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++DI G + +L +L ++ A R + Sbjct: 218 CNLIG-SPLEDILGEGWVQSLHPDDRLR---IVREWNQAIKQNLPFKAEYRF---RHPNN 270 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + E G + D + + ++ L LE+ +GI+ + Sbjct: 271 VINWVISQAIPERGSDGEVTGYIGTMTDINDRKRAEEELL----HLSQALESAVEGISQL 326 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + +G + N A +++ GY E+++ +T + + M ++L +E Sbjct: 327 DTQGHYIKVNPAYAQITGYTPEEMIGMEWTSTVHPDDQEKMMAAYRQMLKNGK---VEME 383 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 K+ ++++ K + M DIS+ ++ + Sbjct: 384 ARAMRKDGSAFYKQVVMVKAYNQQQECIGHYCFMKDISDRREVE--------------RL 429 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +F++ VSHE+RTPLT+I G + + + P G+ N + + ++ ++ND+ Sbjct: 430 KDEFVSVVSHELRTPLTSISGALD-LLASKVVPAGSEDAQRMLNIAANNTDRLVRLINDI 488 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDI +IESGK+ + + + + +++++ +++ A + I + + + + AD + Sbjct: 489 LDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQL--AMSPLSAHLWADPDRI 546 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKA 756 Q+ N++SNAI F+P+G + ++ E ++ V+D G G+ +LE Sbjct: 547 IQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRGIPADKLESI 606 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + FGQ+ S + GTGLGL + ++++ + G+ + ST +G+ P++ Sbjct: 607 FERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFFTLPIFPEEQ 665 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 46/399 (11%), Positives = 110/399 (27%), Gaps = 40/399 (10%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNHIG 134 G + + + +G A ++IG ++ + I+P + Sbjct: 64 PDGIILTFNAAAQRWLGYTAEEVIGKTTPEIVHDKNEVVKVAQELSQELGVTIEPGFEVF 123 Query: 135 DLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 R + T +G+ P+ L+ P+Y +GF G G Sbjct: 124 VAKARLGQVEEREWTYIRKDGS--RFPVLLSVTPLYDAEENITGFLGIGS--DITARKLA 179 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK 250 A + + +++ L + +++ + H Sbjct: 180 EAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERACNLIGSPLEDILGEGWVQSLHP 239 Query: 251 DDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 DD L+ ++ + + F N + + E Y+ Sbjct: 240 DDRLRIVREWNQAIKQNLPFKAEYRFRHPNNVINWVISQAIPERGSDGEVTGYIGTMTDI 299 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + +E + ++ G+ NP++ +T Y + I ST Sbjct: 300 NDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAQITGYTPEEMI-GMEWTST 358 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + A + ++ ++ + + Q Sbjct: 359 VHPDDQEKMMAAYRQMLKNGK------VEMEARAMRKDGSAFYKQVVMVKAYNQQQECIG 412 Query: 429 PQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATS 462 ++ + D R +R ++ E +L + L + S Sbjct: 413 HYCFMK-DISDRREVER-LKDEFVSVVSHELRTPLTSIS 449 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 19/198 (9%), Positives = 48/198 (24%), Gaps = 8/198 (4%) Query: 65 TNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 E+ + + + +T + DA G +E IG+ ++G Sbjct: 179 AEAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERACNLIGSPLEDILGEGWVQSLH 238 Query: 124 ILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 + +K+ + + + + A+P + E +G+ G Sbjct: 239 PDDRLRIVREWNQAIKQNLPFKAEYRFRHPNN--VINWVISQAIPERGSDGEVTGY--IG 294 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + L + E + Y + ++ Sbjct: 295 TMTDINDRKRAEEELLHLSQALESAVEGISQLDTQGH--YIKVNPAYAQITGYTPEEMIG 352 Query: 243 LTEYYAHKDDVLKTEKYP 260 + D + Sbjct: 353 MEWTSTVHPDDQEKMMAA 370 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 71/242 (29%), Gaps = 13/242 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G+ +++ + G +MIGM + + + + Sbjct: 325 QLDTQGHYIKVNPAYAQITGYTPEEMIGMEWTSTVHPDDQEKMMAAYRQMLKNGKVEMEA 384 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ Y + + Y++ +E G F + + + + + Sbjct: 385 RAMRKDGSAFYKQVVMVKA--YNQQQECIGHYCF----MKDISDRREVERLKDEFVSVVS 438 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 HE++ +S+ + S+ P + A+ D L +L E Sbjct: 439 HELRTPLTSISGALDLLASKVVPAG----SEDAQRMLNIAANNTDRLVRLINDILDIERI 494 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + Q ++ +++ L+ LSA+ + + Sbjct: 495 ESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLAMSP---LSAHLWADPDRIIQVFT 551 Query: 328 KC 329 Sbjct: 552 NL 553 >gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 1010 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 119/774 (15%), Positives = 268/774 (34%), Gaps = 55/774 (7%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + + + SE F I T+ W ID+ +++++ +G ++ Sbjct: 264 DISDRQKTEAALIKSEAKFR-TIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQ 322 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 L D + + + G + L+ PI+ + ++ Sbjct: 323 SSLFKFVDEQDYPIVENYLQRRREGIAEQHEFKWKRKNGDI--LWTILSTNPIFD-DGKY 379 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV----------EKEKYDIF 225 +G I+ + +K+F + V Y+ Sbjct: 380 AGC--CAIITDINYRKKTEVALIKSEKRFQEIASTISQFFFVKCAHSGQYIYLSPAYEKI 437 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 ++ + + + + EK + + + + + Sbjct: 438 WGRTCESLYQNPDSWLNTIYPEDRGAVINYQEKQH----QNNLVKREYRIIRNDGVIRWV 493 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFVYSHGN- 340 + + N+ Y+ S + + E + P F +Y Sbjct: 494 YEEVNIIYNDDGSPLRYIGFAEDISDRKEAEIALAESEELLRIAVNHAPDVFVIYDSDRR 553 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 L + N L LT + I L + L ++ Sbjct: 554 LKFVNRRVLELTSWSEETFIGRRD--EELFL-----PEATSHYLPLLEKTIQTLSIQMGE 606 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 TI + + ++ + G+ + + ++K+ + E Sbjct: 607 ATITLPNQPPKTLIVKYLPLLDKQGKLSQILGLTFDITHYKQAEQKLRDSEELFRTAFED 666 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + G+A+++ +G L NR + ++ GY ++L+ + ++L Sbjct: 667 AAIGMALLSPQGNCLKVNRCICEMLGYQEAELLQLQCKDITHPEDYEQEVKSIKKLL-DG 725 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576 Q K+ ++ + + + + + +ISE + + Sbjct: 726 QVQYYYVEKRYLHKQGYVIWVLLSMSVVRNIDGVPLYFIAQAQNISERRAVE-------- 777 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 K++F++ VSHE+RTPLTAI G ++ + + + ++ Sbjct: 778 ------QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQE-FHKFIQIALLETER 830 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 ++ +VND+LDI ++ SG++ E S + +++ + +Q A++ I + + Sbjct: 831 LVRLVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITL--EILPTSLQ 888 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + A+ ++ Q N++ NAI F+P + +S + ++ V+ +VRD G G+ +LE Sbjct: 889 LWAERDAMLQTLTNLVGNAIKFSPPHTTVTLS-AYPQDDMVLFQVRDQGRGIPPEQLETI 947 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ S + GTGLGL + ++++ + GK ++ S AKG+ P+ Sbjct: 948 FSRFQQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFTIPM 1001 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 34/335 (10%), Positives = 103/335 (30%), Gaps = 11/335 (3%) Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 T + + ++ G ++ S +H ++ Sbjct: 90 AESTTIFREVRRLNLRVADVLIYPLDLEEAQGRIEMQLLSSHRGDDFTHHSGITQQLQSV 149 Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + +D P+ ++ + + + + + + + L+ Sbjct: 150 NHQLKTLIDNSPMGTIIWDRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDR 209 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 N + ++ I + + + + ++ + + Sbjct: 210 INRETQTIFANQEKRRICIN---RNYRKDGSVIYCEWYNSNF-YDESGKLNMLLSWVQDI 265 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D + + + + +I+E T +G+ +I+ + + N+ ++ + GY E+I + Sbjct: 266 SDRQKTEAALIKSEAKFRTIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQSSL 325 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CY 554 F+++ ++ +YL Q K +L + + Sbjct: 326 FKFVDEQDYPIVENYLQRRREGIAEQ---HEFKWKRKNGDILWTILSTNPIFDDGKYAGC 382 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DI+ K+ + L ++K ++ +S S F Sbjct: 383 CAIITDINYRKKTEVALIKSEKRFQEIASTISQFF 417 Score = 123 bits (310), Expect = 8e-26, Method: Composition-based stats. Identities = 61/511 (11%), Positives = 137/511 (26%), Gaps = 28/511 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 W D + + S++ + G +++G + + + D N + Sbjct: 166 IW--DRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDRINRETQTIFANQEK 223 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + Y + + + + V A + + K Sbjct: 224 RRICINRNYRKDGSVIYCEWYNSNFYDESGKLNMLLSW--VQDISDRQKTEAALIKSEAK 281 Query: 204 FSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 F + E +G ++ + Q L + + + + D+ L Sbjct: 282 FRTIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQSSLFKFVDEQDYPIVENYL 341 Query: 263 TSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDE 317 + EQ +F N + + ++ K + + Sbjct: 342 QRRREGIAEQHEFKWKRKNGDILWTILSTNPIFDDGKYAGCCAIITDINYRKKTEVALIK 401 Query: 318 GENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPK 374 E E FFV G Y +P++ + + L+T+ + Sbjct: 402 SEKRFQEIASTISQFFFVKCAHSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDR 461 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 V+ Y+ + R + I N + N + G Sbjct: 462 -------GAVINYQEKQHQNNLVKREYRIIRNDGVIRWVYEEVNIIYNDDGSPLRYIGFA 514 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D + + + L + D I + + + NR V +L + E + Sbjct: 515 EDISDRKEAEIALAESEELLRIAVNHAPDVFVIYDSDRRLKFVNRRVLELTSWSEETFIG 574 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 + S L + + Q E + +L + L Sbjct: 575 RRDEELFLPEATSHYLPLLEKTIQTLSIQMGEATITL--PNQPPKTLIVKYLPLLDKQGK 632 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 DI+ +KQ + KL ++++ Sbjct: 633 LSQILGLTFDITHYKQAEQKLRDSEELFRTA 663 >gi|298251004|ref|ZP_06974808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549008|gb|EFH82875.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1352 Score = 399 bits (1025), Expect = e-108, Method: Composition-based stats. Identities = 105/771 (13%), Positives = 246/771 (31%), Gaps = 46/771 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD +++ + SE + + W +G + +++ +G M Sbjct: 607 TDIDEQKQAEQRIKASEENWRVLAETVP-QMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQ 665 Query: 115 GMRLC--DVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 R + + L+ + + + T Y A+P+ Sbjct: 666 SDRWAPLSFIHPDDREGTRALWLHALETGAMYEHEERFRNSQ-TGAYRWFLARAMPVRDG 724 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP- 230 + + FG K ++ + L E + + Sbjct: 725 AGQI--LKWFGTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVWTIQPDGRLDYCNQRY 782 Query: 231 -PPHLRMKNKVSSLTEYY---AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + + LL + E+ + N Sbjct: 783 YDYIGASPEQLLGYGWSQFLHPDDAERTLALRRHLLETGEAYEIKYRLREGNTGNYRWFL 842 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNL 341 +++ + + ++ ++ + E + P V G Sbjct: 843 ARAMPVRDETGQILKWFGTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVMVARSDGQH 902 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARL 400 Y N + T + L L D + + + + RL Sbjct: 903 EYVNQRWRDYTGFTVEQ---TQSDLWAYLQFIHPDDREGARALSQHAQETGAMYEHEERL 959 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 Q ++ + + G + + + + + + ++ + Sbjct: 960 RNSQT--GAYRWFLTRGVPVRDETGQIVKWFGTCTDIDEQKRTEEALRQSQKRASVLMNS 1017 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILS 518 + GI + + ++ N ++ GY ED+ + + + E+ + Sbjct: 1018 SIIGIFVA-EDEQVVDANDTFLRMTGYTGEDLRERRMSWRHMTPPEYLARTQQAYEELAT 1076 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 EK + + + ++ + + + D S K+ + + Sbjct: 1077 QQSIIPYEKEYVCKDGSRLPVLVGAVVLQHHPFQGIAFVL-DNSARKELEQR-------- 1127 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K DF++ SHE+R PL A+ ++ + +R + ++ + Sbjct: 1128 ------KDDFISMASHELRNPLAALKMQTQ-LVRKRLERQSHHEAATALAKVEGPVKRLE 1180 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ +LLD+SKI++G++ E V LD + E +Q I++R + ++ + Sbjct: 1181 RLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQQIQTTHTIVVRGAAPRSL---V 1237 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + QI N++SNAI ++P + I + + V +RVRD G+G+ + +K + Sbjct: 1238 GDKDRLGQIFTNLISNAIKYSPGAETVEIDMSASPE-TVTIRVRDYGLGIPREQRDKIFE 1296 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + +Q G G+GL + ++ + G + S KG++ + P Sbjct: 1297 RFYRATGPKQKAIPGLGMGLYIVAEIIKRHGGTITVESEVGKGSIFTVTLP 1347 Score = 187 bits (475), Expect = 6e-45, Method: Composition-based stats. Identities = 48/514 (9%), Positives = 122/514 (23%), Gaps = 31/514 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 F W + G + + + G + + G ++ + Sbjct: 509 FVWIMHPDGSAEYANPRWCEYTGMTSQQYQGDGWLQAIHPDDQQRVLAGWQSAVQAGRPY 568 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G+ T Y P + FG K ++ Sbjct: 569 EGEQ-RLRNSTTGDYRWFLARGAPFKDAQGTILKY--FGTSTDIDEQKQAEQRIKASEEN 625 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKT 256 + L E + ++ + L+ + + + Sbjct: 626 WRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLSFIHPDDREGTRA 685 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + E+ ++ +++ + + ++ + Sbjct: 686 LWLHALETGAMYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTSTDIEDQKRIE 745 Query: 317 EGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + E + P + + G L Y N + + G S L Sbjct: 746 QQLKESEENWRVLAETVPQLVWTIQPDGRLDYCNQRYYDYIGASPEQLLG--YGWSQFLH 803 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 A++ T A + + N N ++ + + Sbjct: 804 PDDAERTLALR----RHLLETGEAYEIKYRLREGNTGNYRWFLARAMPVRDETGQILKWF 859 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + D + +++++ + E + + +G N+ G+ VE Sbjct: 860 GTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVMVARSDGQHEYVNQRWRDYTGFTVEQ 919 Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KL 548 + + + E + + + Sbjct: 920 TQSDLWAYLQFIHPDDREGARALSQHAQETGA--MYEHEERLRNSQTGAYRWFLTRGVPV 977 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 + + T DI E K+ + L ++K A Sbjct: 978 RDETGQIVKWFGTCTDIDEQKRTEEALRQSQKRA 1011 Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats. Identities = 49/514 (9%), Positives = 115/514 (22%), Gaps = 25/514 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W GY+ ++ G + G + + ++ + Sbjct: 269 LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQGDGWMQCTHPEDRQRVLEVWQRAVETGEPY 328 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L T Y + A P + G A + L Sbjct: 329 ETEQRLRH-GTTGEYRWFLMQATPYTDAQGTILKY--VGTCTDIHDKKRAEAELRALIDA 385 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L I E + L + T L Sbjct: 386 IPQLVWILG--PDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAIHPDDYQHTLTLWRHALE 443 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E E + +++ + + ++ + + Sbjct: 444 TGEPFEIEYRLKNGKTGGYRWFLARALPVRDEAGQILKWFGTCTDIHEKKQIE---DDIR 500 Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 VD P ++ + G+ YANP + T S + G L + + + Sbjct: 501 VLVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTS-QQYQGDGWLQAIHPDDQQRVLAGWQ 559 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + RL + + G + + + Sbjct: 560 SAVQA---GRPYEGEQRLRNSTTGD--YRWFLARGAPFKDAQGTILKYFGTSTDIDEQKQ 614 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-- 500 +++++ + E + G N+ G VE + + Sbjct: 615 AEQRIKASEENWRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLSF 674 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YS 555 + + L E + + + + Sbjct: 675 IHPDDREGTRALWLHALETGA--MYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWF 732 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T DI + K+ + +L +++ + + Sbjct: 733 GTSTDIEDQKRIEQQLKESEENWRVLAETVPQLV 766 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 42/495 (8%), Positives = 110/495 (22%), Gaps = 40/495 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTT 148 DA +K ++ G+ ++G + + + + K + T + Sbjct: 34 DAE-TIKYVNTSAQTMTGSSREALLGNSFWHGAPQ--LLSPSLYQAMRKTRQTQEPTEVE 90 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W + P G F + + L Sbjct: 91 YWSP---MTRNWLRAQLTP------TVEGLTLQFHQMRAPTPTPRQETFPQGERLCIDDL 141 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + E + P +++ +V + L + Sbjct: 142 DGLHTRIGILTPEGIVLDINAVPLDDAQVRREEVIGKPLAETPWWSFAPASQEQLRAAIA 201 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLT 322 + + ++ + ++ H + ++ E Sbjct: 202 RANAGETV--CFEALVRPREGMLLSFESVITPHLNADHHIEYLVIAGIDITARKRAERDI 259 Query: 323 PETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D P + N + T + + + G + + Sbjct: 260 HALIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLTTEEA-QGDGWMQCTHPEDRQRVLEVW 318 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R+ T + + G + D + Sbjct: 319 Q-----RAVETGEPYETEQRLRHGTTGEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKK 373 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + L ++++A + I+ +G N+ E + + Sbjct: 374 RAEAE-------LRALIDAIPQLVWILGPDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAI 426 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + L +E K + + + T Sbjct: 427 HPDDYQHTLTLWRHALETGEPFEIEYRLKN-GKTGGYRWFLARALPVRDEAGQILKWFGT 485 Query: 558 MHDISEWKQEKNKLS 572 DI E KQ ++ + Sbjct: 486 CTDIHEKKQIEDDIR 500 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 72/276 (26%), Gaps = 24/276 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + P F V + Y N S +T + + Sbjct: 1 MSKTKRTERLTPASSETLLHMLKTLPDALFLVNDAETIKYVNTSAQTMTGSSREALLGNS 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P+L + + + R + W+ + Sbjct: 61 FWHGA----PQLLSPSLYQAMRKTRQTQEPTEVE------YWSPMTRNWLRAQLTPTVEG 110 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAV 481 Q T +++ + +L I L+ I I+ EGI+L N Sbjct: 111 LTLQFHQM-----RAPTPTPRQETFPQGERL-CIDDLDGLHTRIGILTPEGIVLDINAVP 164 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLS 540 E+++ KP + L ++ +T+ L +E LLS Sbjct: 165 LDDAQVRREEVIGKPLAETPWWSFAPASQEQLRAAIARANAGETVCFEALVRPREGMLLS 224 Query: 541 LRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLS 572 +I + DI+ K+ + + Sbjct: 225 FESVITPHLNADHHIEYLVIAGIDITARKRAERDIH 260 >gi|256829208|ref|YP_003157936.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578384|gb|ACU89520.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1079 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 121/742 (16%), Positives = 251/742 (33%), Gaps = 49/742 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146 +D + + E + +G +++G+R D I +L + + Sbjct: 211 VDQNHRIIEANRRFADMLGYTPAEVLGLRTWDYEAN---MTEGMIKELFSDFSQVNSVFE 267 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G+ V + A I R+ + ++ +K F Sbjct: 268 TRHRRKDGSIFDVEVTTAGASIDGRS------CVLAFSRDITTRKEAERQLRQSEKHFRA 321 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258 L E+ + + + P LR +LT H D Sbjct: 322 LFELSRDGFILADAEGRFLDANKAYCDMTGYSLPELRALGDFYALTPEKWH-DWQRDEIW 380 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L S ++ + +E H + + + + + ++ S +E Sbjct: 381 TRLFKSGDTGVYRKEYIHK-DGHVFPVELRDFAVHDDHGVVRYAWGIVRDISERVRTEER 439 Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + V++ P + GN+ Y NP F L+ Y + G + + Sbjct: 440 MRSLMQMVEQSPACIVMTDPQGNIEYVNPKFTELSGYSFDEA----RGQNPRILGSGYKS 495 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + R + + + + + I+ + Sbjct: 496 REEYQDLWRTIESGRQWRGEFRN---RHKDGSLYWESALIAPILDPDGRTTHYVAIKEDI 552 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 R + ++ + I++ ++ I+++ N S F +++ Sbjct: 553 TKRRHTEEELRKRDINFKKIVDILPQLVSYIDKDLRYRFVNATYSSFF--SPGNLIGNTV 610 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555 + + ++ ++ E+ + + +I Y Sbjct: 611 AEVIGEKAFEATRGHIEQVFQGKTVH-YGATLTYPEMGERFVDVYLIPDYSSHGVVDGYY 669 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 ++D++ K+ ++ L AK AE + KS+FLA +SHEIRTPL I+G ++++ Sbjct: 670 AILNDLTHLKRIEDSLRLAKDEAEAANKLKSEFLANMSHEIRTPLNGILGMLQLMQ---- 725 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + E + +S + +++D+LDISKIE+ ++ + + L Sbjct: 726 GSNLDAEQQECLHTAIKSSERLTRLLSDILDISKIEADRLIFREHAFDIMDVEKALTELF 785 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 E I +P ++L D + QI N++ N++ F G +S T Sbjct: 786 GQAVKEAGIAYDFRVDPGLPKQVLGDEARLVQILFNLVGNSLKFADKG---YVSVDITPL 842 Query: 735 E-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ V D+G+GM+ +PF Q S R +G GLGL + + +V Sbjct: 843 PFTAGAPLRLLFCVTDSGLGMSEQTQRDIFEPFIQSDGSYTRRHQGVGLGLTIVRKLVQR 902 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 G + S +GT + + P Sbjct: 903 MGGSLCLDSVSGQGTAVYVSLP 924 Score = 130 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 40/415 (9%), Positives = 99/415 (23%), Gaps = 43/415 (10%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V R R D + S + N + Sbjct: 61 QVIRGSRAGNENCMRSDALLGAYNPSGPNVSRCMSGGLWDAGVSITVGGRHVANWLIGQV 120 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 ++ Y + + + + ++ L + E Sbjct: 121 RSSLADEEA--MLGYAKTIGADPQEYREAMKEVPFMEEAQFRRVADALFVIANSLSEKAY 178 Query: 305 HRNHPSLSAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE- 361 + + + E + V + + AN F + Y + + Sbjct: 179 QQTMLLEEKRERQKMDAMREMLMDRSLDAIVVVDQNHRIIEANRRFADMLGYTPAEVLGL 238 Query: 362 ---------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 G + L S N++ R D + + + Sbjct: 239 RTWDYEANMTEGMIKELF--SDFSQVNSVFETRHRRKDGSIFDVEVTTAGASIDGRSC-- 294 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + +R++ ++ E + DG + + EG Sbjct: 295 -----------------VLAFSRDITTRKEAERQLRQSEKHFRALFELSRDGFILADAEG 337 Query: 473 IILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITL 530 L N+A + GY + ++ F + + + K + Sbjct: 338 RFLDANKAYCDMTGYSLPELRALGDFYALTPEKWHDWQRDEIWTRLFKSGDTGVYRKEYI 397 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKE 581 K+ + + + + + DISE + + ++ ++ E+ Sbjct: 398 --HKDGHVFPVELRDFAVHDDHGVVRYAWGIVRDISERVRTEERMRSLMQMVEQS 450 >gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1637 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 140/739 (18%), Positives = 283/739 (38%), Gaps = 43/739 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D ++ ++ E+ + + +G + D L+R + Sbjct: 769 LDDDLRVRRVTPEISRLLSIEPND-LGRSFESFIHPIQDD------QFLERVRQARDERV 821 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + ALP Y RN E +G ++ VD RA L KF Sbjct: 822 ELEWEVSCRDSSYLVRALP-YLRNSEINGV----VIAFVDVDILRRAERDVLKFKFMADQ 876 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 I +K K +++ ++ + K+ L + Sbjct: 877 NIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSETDPKSFDDRLEKAHAKG 936 Query: 269 LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E + + ++ + + K+ + SL + L E V Sbjct: 937 GNLFESWLQQRDGTEFPVEVALTPVFLQGKQL--LFASIRDISLRKTHESQMRLLSEAVQ 994 Query: 328 KCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + + N F +T + + I G + + +DN Sbjct: 995 SAANGIVITDCSSEDHPITFVNKGFTDMTGFSEQEII----GRNCRFLQGEHTDNE--TV 1048 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + R+ + + + N E ++ G++ + + Sbjct: 1049 LRIRRALGRGESVRELIKNYRKNGEPFWN-DLYITPVHDENGILTHFVGVQNDVTERIEA 1107 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502 R+ E + +L++T++G+ ++ +G +N ++L GY I+ K + Sbjct: 1108 ARQTETNERTIRLLLDSTAEGLFGLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQ 1167 Query: 503 QNTP---SVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555 P L + ++ + + + K+ + + + Sbjct: 1168 PCDPNGNPFEKDSLQILGAVRAGEAINRYDERFCRKDGESFPVEYWCHPIQEDGKIVGAV 1227 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T DI Q +N+L AK A+ + KS FLA +SHE+RTPL+AI+GF+++++ Sbjct: 1228 VTFVDIETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP- 1286 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I R+G+ +L ++ D+LD+S+IE+ K VSL E +++ + Sbjct: 1287 ---DEGTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETM 1343 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732 ++ + + + + +PR I D ++QI +N+++NAI FTP G ++ + Sbjct: 1344 KMRTQDYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKG-RVEVVVRSEKI 1402 Query: 733 -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + ++L+V D G+G+ + +L +PF Q + R GTGLGL + K + +A G Sbjct: 1403 DDDSFLLLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGT 1462 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + ST +G+ I P+ Sbjct: 1463 IQVSSTEGEGSEFTIRLPV 1481 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 60/499 (12%), Positives = 147/499 (29%), Gaps = 58/499 (11%) Query: 89 IDAHGYLKEISEELPKTI----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 ID + + + + G + ++ M ++ + + +K+Q+ + Sbjct: 550 IDTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGA----AVTQAIKQQSAVH 605 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + P++G + + +L P + ++ + ALG L Sbjct: 606 YQGIPSPVDGPDHVL--ELIVEPYH-----VPKLASSCVLIQFKASEMRTALGDAL---- 654 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + +++ L + + L+ L TS Sbjct: 655 ------------TTSNESTESEGTLLDFSTAAHSRIEDLEQELSFNRQNLQATIEELETS 702 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E E+ N + + ++ L R + A D L Sbjct: 703 NEELQATNEEMVASNEELQSTNEELQSVNEELYSVNAELQVRVNEVNEANADMVNLLATT 762 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 V F+ + P L + D G P + D+ ++ V Sbjct: 763 RVG----VVFLDDDLRVRRVTPEISRLLSIEPNDL----GRSFESFIHP-IQDDQFLERV 813 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 R +R + + + N + ++ + + Sbjct: 814 RQARDERVELEWEVSCRDSSY-------LVRALPYLRNSEINGVVIAFVDVDIL------ 860 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+ E +V++ + + D + +++++G I NR + GY E+IL + + F + Sbjct: 861 RRAERDVLKFKFMADQNIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSET 920 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562 P + L + + + ++ + + L ++ DIS Sbjct: 921 DPKSFDDRLEKAHAKGGNL---FESWLQQRDGTEFPVEVALTPVFLQGKQLLFASIRDIS 977 Query: 563 EWKQEKNKLSHAKKIAEKE 581 K ++++ + + Sbjct: 978 LRKTHESQMRLLSEAVQSA 996 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 112/391 (28%), Gaps = 13/391 (3%) Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDD 252 KR D + + + SV S PPP R +N V + Sbjct: 491 KRRDVRLPIELRMPLANQSVSPVMPQTPSIVEPPPQRRNENLLEIYNVLLADKMPPSLVI 550 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + L + N+ K+ ++ ++ + S ++ + Sbjct: 551 DTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGAAVTQAIKQQSAVHYQGIP 610 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTL 369 + D +++ V+ +P S + + S + E G L Sbjct: 611 SPVDGPDHVLELIVEPYHVPKLASSCVLIQFKASEMRTALGDALTTSNESTESEGTLLDF 670 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 A + + + R + + N + ++ Sbjct: 671 STAAHSRIEDLEQELSFNRQNLQATIEELETSNEELQATNEEMVASNEELQSTNEELQSV 730 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + ++ ++ + ++L T G+ ++ + + +S+L Sbjct: 731 NEELYSVNAELQVRVNEVNEANADMVNLLATTRVGVVFLDDDLRVRRVTPEISRLLSIEP 790 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 D+ + F F+ + + +E S ++ L + + Sbjct: 791 NDL-GRSFESFIHPIQDDQFLERVRQARDER----VELEWEVSCRDSSYLVRALPYLRNS 845 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + D+ ++ + + K +A++ Sbjct: 846 EINGVVIAFVDVDILRRAERDVLKFKFMADQ 876 Score = 46.2 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 13/148 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVS-------DILHIDPNNHIGDLL 137 + +D G +E+ + +G +++G L +++ + D +G + Sbjct: 1129 LFGLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVR 1188 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + +G + P++ PI + + G Sbjct: 1189 AGEAINRYDERFCRKDGESF--PVEYWCHPIQ-EDGKIVGA--VVTFVDIETRLQVENEL 1243 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + +E K + + Sbjct: 1244 REAKLAADAANEAKSHFLANMSHELRTP 1271 >gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1545 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 132/748 (17%), Positives = 266/748 (35%), Gaps = 42/748 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148 D H ++E G M+G D D+L + + Sbjct: 485 DDHLRFVFVNEAFAALFGQTPQAMLGKPGGDFLPTNAVALFEQSERDVLATGRPYEVEE- 543 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + ++G + + + + + S +GF F I + R + + + K L L Sbjct: 544 NFEVDGASRSRIVRKSRVGMASGRNYVAGFL-FDISDMKRRETEAQDARKHLASVLESLP 602 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------------------SLTEYYAHK 250 + ++ + Q P L+ + S Sbjct: 603 AAVIIYDRDDRFVFANRKIQDTLPALKPAWQPGCTFREALVLGHANGYFRSSGDPQIDQL 662 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 D + + + H + Y + ++ + Sbjct: 663 YDSDHDRWLDAILARYRLPSSSYERHNPDGRWYQVYDMRTDDGTFIGVRVDISEIKSREA 722 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 +L +D+ P+ F+ + ++ + N ++ +T D I L Sbjct: 723 ALRDSMRQIDLFRHVMDELPVAAFIKAQDLSIEFVNKAWCAITGLAKEDVIGRTD--RQL 780 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 A + + + ++ Sbjct: 781 FGAQDADGYSHDD--TQVAVTGVVKEVE---EPVTHRDGTVRQLMTRKSRLVALDG-SVH 834 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 G + D + +R +E + + S+++ I + N+ L G Sbjct: 835 LVGSSTDITDVKARERALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTG 894 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + E+ + K + + +N L + + + ++ E +TL + + + Sbjct: 895 FSKEEAIGKTDIEIFGPDGEAFVNGDLAVLRTGETQEVEETVTLADGSVRHQFARKGAMI 954 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 S + DI+E K + +L A++ A KS+FLA +SHEIRTP+ ++G Sbjct: 955 ASDGSLYLIGSTTDITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGM 1014 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E++ +P+ + + I +SGN +L I+ND+LD SKI++G++ L P +L E Sbjct: 1015 AELLAKSDL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAE 1070 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ- 724 A+ + +LV A EK + + + + + D+ ++QI N+L NA+ FT G Sbjct: 1071 AIEDVATLVSTRAKEKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVL 1130 Query: 725 IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++ ++ + V DTG+G+ +L+ + F Q+ S R EGTGLGL + Sbjct: 1131 VDVTGERVPTGTKLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSR 1190 Query: 784 MVDANMGKFYIFSTPAKGTL--IEIIFP 809 +V+ G + S KG+ + P Sbjct: 1191 LVELMGGDIGVESAEGKGSTFWFSVTLP 1218 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 62/529 (11%), Positives = 153/529 (28%), Gaps = 44/529 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHI-GDLLKRQNTW 143 W DA +S+ G ++G R ++ +L+ D + + L+ + Sbjct: 74 VWETDAELRFSWLSQNYQAATGIDPANVLGRFRFDFLNQVLNGDRSGAAHLEDLQAHRPF 133 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG---------IVHVNRVDNDPR 194 G+ + + P + F+G+RG G ++ R + Sbjct: 134 RDFVYEL-KAGSADCRWVLTSGFPKFDDEGRFAGYRGIGRNVTALAGAFKNLGREPSGDG 192 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + L + + G ++ + ++ R+ + ++ ++ ++ Sbjct: 193 EPDQHLADLERTMDAMHMGVVLLDARLDTLIVNKAYRDLSRIPDGAVAVGAPFSLLMELN 252 Query: 255 KTEKYP--------------LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 ++ L + +F N + + Sbjct: 253 RSSGIYGDIDEQQWQRYLATRLDEIRAGSVAPREFVHANGRTMMFSVTALSGGRRLLTYY 312 Query: 301 EYLSHRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355 E + + + VD+ PI V N +F + Sbjct: 313 EVTEIKQRDAEIKSANARNAETFASLRTMVDQMPIGVLVLDADMRAEIINRAFYDFWQID 372 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLA 412 + + + + A A + N +L Sbjct: 373 ARRAEIGCSFRDLMDASRDIDPFGADDASWQRHIAEREAEIRAGIAGSRQFPRNDGRTLI 432 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQL-CSILEATSDGIAIIN 469 + P + + + D + + ++ E +L +++ A D I + + Sbjct: 433 SSMAPLAGGKRLISYV-------DVTDMKDREAELADALEKARLAEAVINAVKDPIFVKD 485 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + N A + LFG + +L KP FL N ++ ++L+ +E+ Sbjct: 486 DHLRFVFVNEAFAALFGQTPQAMLGKPGGDFLPTNAVALFEQSERDVLATGRPYEVEENF 545 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 + + + + + + DIS+ K+ + + A+K Sbjct: 546 EVDGASRSRIVRKSRVGMASGRNYVAGFLFDISDMKRRETEAQDARKHL 594 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 4/115 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNH 511 L ++EA SD + + E ++ G ++L + FL Q N Sbjct: 63 LRRLVEAGSDWVWETDAELRFSWLSQNYQAATGIDPANVLGRFRFDFLNQVLNGDRSGAA 122 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564 +L ++ + + + + + + K Y +++ Sbjct: 123 HLEDLQAHRPFRDFVYELKAGSADCRWVLTSGFPKFDDEGRFAGYRGIGRNVTAL 177 >gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1055 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 125/646 (19%), Positives = 239/646 (36%), Gaps = 58/646 (8%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVS-SLTE 245 + + + ++ + E + + K + Sbjct: 211 VEQQKQQLQHSEFRYRAIIEDQSELICRYSADGILTFVNEVYCRYFGKTPKELIGHRFVP 270 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 D + L + + ++ + +N E+ + Sbjct: 271 LIHPDDQAVLEGFIAELNPNNPVGIVEHRVILESGEIRWQQWSDRAIFDNQGRLLEFQAV 330 Query: 306 RNHPS----LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI 360 + A + E V + G + + NP+ L + + Sbjct: 331 GRDITDCKLTEARLRQSEARLNAIVSSTSDGIMIVDRQGQVLFTNPAAANLLNQDVENLL 390 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 GL N + + R+D A + +W E+ + Sbjct: 391 NYNFGL--------PVGVNQTTELGIVRADGQLSFAEMSVVETEWEGESVFEICLR---- 438 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + + + + + +I E + GIA+ G ++ N+ Sbjct: 439 ---------------DVTERQRAEAALRESEERFRAIFEQAAVGIALGTPSGQLIRVNQR 483 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 L GY ++L+ F + + + LT++L+ R T + K+ + Sbjct: 484 FCDLVGYEESELLQLSFPDITHPDDRAAELNDLTQLLA-GQRSTYSREKRFIRKDGQWQW 542 Query: 541 LRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + + + + DI + KQ + L A AE + KS+FLA +SHE+ Sbjct: 543 VNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVALQQALDAAEAANHGKSEFLANMSHEL 602 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL AI+GF++++ N +Y I RSG +LD++N++L++SKIE+G+++ Sbjct: 603 RTPLNAILGFTQLMARD---ASLNQDQQDYLGIITRSGEHLLDLINNVLNMSKIEAGRIS 659 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715 L L V +++L A K + + N+P +AD ++QI +N++ NA Sbjct: 660 LSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGMADEGKLRQILINLVGNA 719 Query: 716 IHFTPSGGQIIISTTH-----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + FT G ++I+ + + V DTGVG+ EL+ + F Q Sbjct: 720 VKFTSQG-RVILRVQEISDRITAPTNTDTQSRLFFEVEDTGVGIPPDELDTLFQAFVQTK 778 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S Q GTGLGL +++ V G I STP +GTL++ P+ Sbjct: 779 TS-QRSQSGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFDIPI 823 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 35/366 (9%), Positives = 90/366 (24%), Gaps = 22/366 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 A G L ++E + G ++IG R + L N G Sbjct: 238 RYSADGILTFVNEVYCRYFGKTPKELIGHRFVPLIHPDDQAVLEGFIAELNPNNPV-GIV 296 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 I + + I+ F+ G A ++ + + + + Sbjct: 297 EHRVILESGEIRWQQWSDRAIFDNQGRLLEFQAVG--RDITDCKLTEARLRQSEARLNAI 354 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + + +L ++ + L + V +T + ++ Sbjct: 355 VSSTSDGIMIVDRQGQVLFTNPAAANLLNQDVENLLNYNFGLPVGVNQTTELGIV----R 410 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + + S A E E + Sbjct: 411 ADGQLSFAEMSVVETEW--------EGESVFEICLRDVTERQRAEAALRESEERFRAIFE 462 Query: 328 KCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + + + G L N F L Y+ + ++++ D+ A + L Sbjct: 463 QAAVGIALGTPSGQLIRVNQRFCDLVGYEESELLQLS------FPDITHPDDRAAELNDL 516 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + +R + G+ + + + Sbjct: 517 TQLLAGQRSTYSREKRFIRKDGQWQWVNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVA 576 Query: 447 MEIEVM 452 ++ + Sbjct: 577 LQQALD 582 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 17/175 (9%), Positives = 55/175 (31%), Gaps = 7/175 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKR-QNTWYGKTT 148 G L +++ +G +++ + D++ N + LL ++T+ + Sbjct: 473 PSGQLIRVNQRFCDLVGYEESELLQLSFPDITHPDDRAAELNDLTQLLAGQRSTYSREKR 532 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G +V + ++ + + + G+V + ++ + Sbjct: 533 FIRKDGQWQWVNVAVSLVRTWMDTPNYI----IGVVEDIQQRKQTEVALQQALDAAEAAN 588 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 K + + + ++ + +SL + ++ LL Sbjct: 589 HGKSEFLANMSHELRT-PLNAILGFTQLMARDASLNQDQQDYLGIITRSGEHLLD 642 >gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1955 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 122/733 (16%), Positives = 256/733 (34%), Gaps = 31/733 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G L ++E + G ++IG + L Q Sbjct: 1004 PDGKLSYVNEAFCRYYGVSRDEVIGHCYQPRIYPEDQPIIDRCLAQLSPQQPVGIVEHRV 1063 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + G + IY + G L + + ++ + E Sbjct: 1064 IVNGE--VRWMQWTNQAIYDTEGNLVELQSVG--RDINDRKRVEELLHQSEARYLSILEY 1119 Query: 211 KKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + K + + ++ + + + +D ++Y S + Sbjct: 1120 QTEFITRFKPDGKLSYVNEAYCRYFGISKEDFLGHCYQPIIYPEDQATIDRYLAQISPQQ 1179 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----TP 323 + E+ +N + + + E S + + Sbjct: 1180 PVFNIENRVIVNGEVRWTQWTNQAIYDTQGNLVELQSVGRDINDRKQVELALKRVNQQLQ 1239 Query: 324 ETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D P ++ + N +F L + + Sbjct: 1240 AFFDYSPAIIHIFDAEMVYRRVNRAFANLFNLSEEQIVG------RTFGDFFPEEIVNRF 1293 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + ++ P + + I + + + Sbjct: 1294 RTRVKILVDGGKPLIIEDELVINDQSKIFESILFPLI--DDNGKFTLFGSIVTDISERKQ 1351 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYP-VEDILRKPFTVF 500 + ++ +I ++D I +++ + I I+ NR +LF E+++ Sbjct: 1352 AELELRKSRDLRDAIFHESADAIFLVDVDSILIVDCNRRAVELFEAQKREELIGIAGYTL 1411 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 +Q Y ++ LE + + +L + + + + + D Sbjct: 1412 QKQPFTPQEIEYSRNEVNQKGFWNLEVEYITKKENTFWGNLAVKPIYIGDQMFHLVRVTD 1471 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS+ KQ + +L AK++AE S K F+A +SHE+R+PL AI+GFS ++KN L Sbjct: 1472 ISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLDE 1531 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + A I RSG +L+++N +LD++KIE+ ++ + ++LD+ + + ++ L A Sbjct: 1532 ---RKNAEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKAQ 1588 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE- 735 E+ + +++P I D ++Q+ +N+LSNA+ FT G I + + + N Sbjct: 1589 EQGLNFNVQKTSDVPCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKKSDNNV 1648 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTGVG+ E + F Q + + EGTGLGL +++ + G+ + Sbjct: 1649 MLNFEVEDTGVGIAPEEQTDIFEAFNQ-SQAGKQVKEGTGLGLAISREFIKLMGGEISVE 1707 Query: 796 STPAKGTLIEIIF 808 S G+ + Sbjct: 1708 SQVNIGSKFQFYI 1720 Score = 132 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 60/520 (11%), Positives = 157/520 (30%), Gaps = 39/520 (7%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWYGKTTLWPIE 153 S +L K +G ++ + S+ +H D +H+ L + + + + + + Sbjct: 620 WSPQLYKLLGLSVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRVQRSD 679 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLDKKFSHLHEIKK 212 G Y + N + R G LGK + + Sbjct: 680 GR--YRWFLIKGQASRYPNGKPE--RMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQSPS 735 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKV--------SSLTEYYAHKDDVLKTEKYPLLTS 264 ++ E + + ++V ++L H DD ++ Sbjct: 736 SIYTLVLEPDGRLWFEYTSSAVETIHEVTLAQALENANLVIEQMHPDDRAGYLAAWTRSA 795 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E L E Q Q + S + + S E + E Sbjct: 796 ESLELFSHEWRIITPTGQLKWLQATSKPERRSNGAIAWHGVIQDISEHKQAQEALRRSEE 855 Query: 325 TVDKCPIP-------FFVYSHGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + Y +G + Y +P+F + + +E A T + Sbjct: 856 RFQELAAASPGVIYTVIEYPNGPVCYEYLSPAFEDIHEISVESVLEDATI--TFNQIHRD 913 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + R+ T + + + E + +G+ Sbjct: 914 DRDGYKQAIKESLESGKPFKYEWRIFT---PSGKIKWIQANSRPQRRENGE-IAWHGVVQ 969 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + + + + SILE ++ + +G + N A + +G ++++ Sbjct: 970 DISERKQAQELLHQSEARYLSILEYQTELVTRFKPDGKLSYVNEAFCRYYGVSRDEVIGH 1029 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + +++ L ++ +E + ++ ++ + + + Sbjct: 1030 CYQPRIYPEDQPIIDRCLAQLSPQQPVGIVEHRVIV---NGEVRWMQWTNQAIYDTEGNL 1086 Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + DI++ K+ + L ++ ++++F+ R Sbjct: 1087 VELQSVGRDINDRKRVEELLHQSEARYLSILEYQTEFITR 1126 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 28/297 (9%) Query: 313 AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTK----YKSVDDIEIA---- 363 E +D PI + +G N + S D I Sbjct: 439 QALKLSEQRFSSLLDNIPIGVSILDRNGQHILINKVSEQILGQGIKTTSYDQISEVYQVY 498 Query: 364 -GGLSTLLDAPKLSD------NNAIKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMT 414 G + L +L M + I + +W + + Sbjct: 499 IAGTNQLYPTEELPGFRSLKGEKVQVDDMEVEVNGRRIPLEVTSIPVFDEWGTVHYSIIA 558 Query: 415 FIPFEKANQFPENM--PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 F + + + Q +E E + + ++ +L ++ A +GI + Sbjct: 559 FQDITERHHIEQLQKNYQQQLEQEITERTLA---LQKSEERLKLVIAAMGEGIWDWDIIN 615 Query: 473 IILSTNRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + + KL G V +I P F+ F+ + + LT+ L + +E Sbjct: 616 NTAWWSPQLYKLLGLSVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRV 675 Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 S + ++ + P + DI+ KQ + KL ++ ++ S Sbjct: 676 QRSDGRYRWFLIKGQASRYPNGKPERMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQ 732 Score = 91.2 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 67/619 (10%), Positives = 178/619 (28%), Gaps = 66/619 (10%) Query: 22 TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81 TQ+L++ + N E + K+ N DSF + + S+ L F + Sbjct: 400 TQELAQNNLLNPLEKTRIKEINQLTDSFAEMA-----AQLNSSFQALKLSE-QRFSSLLD 453 Query: 82 TVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLK 138 + +D +G I++ + +G ++ +V ++I N + + L Sbjct: 454 NIPIGVSILDRNGQHILINKVSEQILGQGIKTTSYDQISEV-YQVYIAGTNQLYPTEELP 512 Query: 139 RQNTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + G+ +E +P+++ ++P++ + + Sbjct: 513 GFRSLKGEKVQVDDMEVEVNGRRIPLEVTSIPVFDEWGTV-HYSIIA-FQDITERHHIEQ 570 Query: 196 LGK-RLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-----------QSPPPHLRMKNKVSSL 243 L K + + E E+ + + + K+ L Sbjct: 571 LQKNYQQQLEQEITERTLALQKSEERLKLVIAAMGEGIWDWDIINNTAWWSPQLYKLLGL 630 Query: 244 TEYYAHKD-----------DVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFG 290 + D D + L E++ P + + Sbjct: 631 SVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRVQRSDGRYRWFLIKGQ 690 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFF---VYSHGNL-- 341 + + + + + + +E T + + + P + + G L Sbjct: 691 ASRYPNGKPERMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQSPSSIYTLVLEPDGRLWF 750 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + + +E A L ++ ++ + + + + Sbjct: 751 EYTSSAVETIHEVTLAQALENAN-----LVIEQMHPDDRAGYLAAWTRSAESLELFSHEW 805 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 I + + + +G+ + + + + + + + A+ Sbjct: 806 RIITPTGQLKWLQATSKPERRSNG-AIAWHGVIQDISEHKQAQEALRRSEERFQELAAAS 864 Query: 462 SDGIAII--NREG--IILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTE 515 I + G + A + VE +L F + ++ + E Sbjct: 865 PGVIYTVIEYPNGPVCYEYLSPAFEDIHEISVESVLEDATITFNQIHRDDRDGYKQAIKE 924 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLS 572 L + T K+ ++ + + + DISE KQ + L Sbjct: 925 SLESGKP--FKYEWRIFTPSGKIKWIQANSRPQRRENGEIAWHGVVQDISERKQAQELLH 982 Query: 573 HAKKIAEKESSHKSDFLAR 591 ++ ++++ + R Sbjct: 983 QSEARYLSILEYQTELVTR 1001 Score = 85.1 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 31/389 (7%), Positives = 96/389 (24%), Gaps = 25/389 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F G L ++E + G +G + + + Q + Sbjct: 1123 FITRFKPDGKLSYVNEAYCRYFGISKEDFLGHCYQPIIYPEDQATIDRYLAQISPQQPVF 1182 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + G IY + G KR++++ Sbjct: 1183 NIENRVIVNGE--VRWTQWTNQAIYDTQGNLVELQSVG--RDINDRKQVELALKRVNQQL 1238 Query: 205 SHLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-- 260 + + + Y ++ + ++ T ++++ + Sbjct: 1239 QAFFDYSPAIIHIFDAEMVYRRVNRAFANLFNLSEEQIVGRTFGDFFPEEIVNRFRTRVK 1298 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDE 317 +L L +++ + ++ + F + +N + + Sbjct: 1299 ILVDGGKPLIIEDELVINDQSKIFESILFPLIDDNGKFTLFGSIVTDISERKQAELELRK 1358 Query: 318 GENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 +L + F+ + + N + L + + +++ G K Sbjct: 1359 SRDLRDAIFHESADAIFLVDVDSILIVDCNRRAVELFEAQKREELIGIAG----YTLQKQ 1414 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + + + P +Q + Sbjct: 1415 PFTPQEIEYSRNEVNQKGFWNLEVEYITKKENTFWGNLAVKPIYIGDQMFHLVRV----T 1470 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDG 464 + D + + +++ + EA S+ Sbjct: 1471 DISDRKQIELELQKAKE----VAEAASEA 1495 >gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1865 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 118/673 (17%), Positives = 238/673 (35%), Gaps = 38/673 (5%) Query: 160 PIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 + ++ PI SG+ F + A + +++ + + Sbjct: 953 WLSVSVCPI---ELSPSGYPRFCYVAKDITDRKRAEAALAKSEEQLRLTLDFTHIGTWDW 1009 Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYA------HKDDVLKTEKYPLLTSEESSLPEQ 272 + + L + Y +D + + + + Sbjct: 1010 NVHTNEVNWNDNHFRLLGVEPQQASDPYQLWRKAIHPEDLDRIEQALSNALFQHTDYEAE 1069 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + N + E + L S ++ L Sbjct: 1070 YRVVYPDGTVRWLVGKGRGIYNEAGEPLKMLGVIFDVSDRKLAEQTLELQAVITRSMAEG 1129 Query: 333 FFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + N + YANP F + Y + + + ++ + + Sbjct: 1130 ICLVRADNGLIIYANPKFEQMFGYDAGEMNGQHVAIVN-YGNEQIEPEEVNQAIRTAVLQ 1188 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 A ++ + K ++ + M + + D + + Sbjct: 1189 NGEFAYQVH--NVKKDGTPFWCSATCSVFKHPEYGDVM--VAVHQDITDRTQAEAALRES 1244 Query: 451 VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPS 507 + E D + + + +L + A ++ E + P + + Sbjct: 1245 EEKFRQFAENIQDVFWMTDNQTQQLLYVSPAYEIIWQRSCETLYSNPLNWLATIHPDDRP 1304 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + + ++ + + +R + + + DIS+ Sbjct: 1305 QVEAA---YIEQQKTGIYDREYRIVRPDNSIRWIRDRGFPIRDEAGNIIRMTGIAEDISD 1361 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ + +L+ AK+ A + KS+FLA +SHEIRTP+ AI+GFS++++ G + +P+ Sbjct: 1362 RKQTEVELAAAKEAAVAANRAKSEFLANMSHEIRTPMNAILGFSDLLQ----GSISDPQP 1417 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y N I SG +L ++ND+LD+SKIE+GK+ L +EPV + V E ++ A +K Sbjct: 1418 RAYLNSIAASGRTLLALINDILDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKS 1477 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHT-----SNEE 736 + + N+P IL D ++QI N + NA+ FT +G +I + + + Sbjct: 1478 LSLLVEIDENVPTAILFDPIRLRQILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQ 1537 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + + DTG+G+ + + F Q + GTGLGL + K + + G + S Sbjct: 1538 IEITIADTGIGICLEQQHSIFEAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLES 1597 Query: 797 TPAKGTLIEIIFP 809 KG+ IFP Sbjct: 1598 ELGKGSAFTFIFP 1610 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 60/500 (12%), Positives = 143/500 (28%), Gaps = 27/500 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + + G + +G L + P I L W G+ Sbjct: 378 VDLNDAITFWNHGAAVLYGFSQTEALGKTLAQLLSTNFPKPLTEIKKELFEYGRWEGELI 437 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT + + + G + + +AL + L Sbjct: 438 QQRGDGTL--IFVASRWTVQRDLAGKPKGIMKIN-ADITKSKQAEKALIYSSLRLSKILD 494 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVS-SLTEYYAHKDDVLKTE-----KYP 260 K SV+ + + + SLT + D + +E Sbjct: 495 IAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFDSVYSEKFTNVPQS 554 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + + + L + E Sbjct: 555 DEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKIYTAILRDISERKIAETSLRER 614 Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + ++ PI + NP + Y + + D Sbjct: 615 EERFRKVFEEGPIGMAIVGLDYRFIKVNPMLCQMIGYTESELLA------LTFSNITHPD 668 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + I + R + + + ++ ++ ++ + + + + Sbjct: 669 DLEIDVQLAQRLFKGEVPFYKIEKRYLKKNQETIWVSLTGSIVRDRDGQPIYYIAMIEDI 728 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ ++ Q I+ T DGI ++NR+ I N A + +I+ Sbjct: 729 TNRKRAEKSLQ----QYERIVSTTLDGIVLLNRDYIYQIANPAYLSWYNKSSHEIIGHSV 784 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYS 555 + Q ++ L + L+ + Q EK+ +K LS+ S Sbjct: 785 KDIVGQEVFENLSPALEQALAGETIQ-FEKLFEHLPGGKKFLSVTFTPYFAVEQEISGVL 843 Query: 556 LTMHDISEWKQEKNKLSHAK 575 +++ D+++ K+ +N L ++ Sbjct: 844 ISLRDLTKLKEAENSLQQSE 863 Score = 128 bits (322), Expect = 4e-27, Method: Composition-based stats. Identities = 53/532 (9%), Positives = 152/532 (28%), Gaps = 31/532 (5%) Query: 56 DQNQESVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 D ++ ++ T+ + E F F+ P + +++ L + IG ++ Sbjct: 600 DISERKIAETSLREREERFRKVFEEGPIGMAIV---GLDYRFIKVNPMLCQMIGYTESEL 656 Query: 114 IGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 + + +++ ++ + + L K + +Y + + + + L + R+ Sbjct: 657 LALTFSNITHPDDLEIDVQLAQRLFKGEVPFYKIEKRYLKKN-QETIWVSLTGSIVRDRD 715 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 + + ++ ++ ++ S + Y I + Sbjct: 716 GQPIYY--IAMIEDITNRKRAEKSLQQYERIVSTTLD--GIVLLNRDYIYQIANPAYLSW 771 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGT 291 + + +++ + +V + L + ++ ++ F + + F Sbjct: 772 YNKSSHEIIGHSVKDIVGQEVFENLSPALEQALAGETIQFEKLFEHLPGGKKFLSVTFTP 831 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD------KCPIPFFVYSHGNLFYAN 345 +E L + + + T+ P+ +G++ + + Sbjct: 832 YFAVEQEISGVLISLRDLTKLKEAENSLQQSESTLRSFFNSGAMPMGIVELHNGDILHIS 891 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 ++ ++S + S L S I+ Y I A R Sbjct: 892 DNWAAAQFFESTPEAMQNQFASAL-----GSPPTTIEQWTTYYQQSQQIQAPVRFEHFYE 946 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 ++ + + D + + + QL L+ T G Sbjct: 947 TSTKQGWLSVSVCPIELSPSGYPRFCYVAKDITDRKRAEAALAKSEEQLRLTLDFTHIGT 1006 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 N ++ N +L G + + + + + L+ L Sbjct: 1007 WDWNVHTNEVNWNDNHFRLLGVEPQQASDPYQLWRKAIHPEDLDRIEQALSNALFQ--HT 1064 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 E + + L + + + + D+S+ K + L Sbjct: 1065 DYEAEYRVVYPDGTVRWLVGKGRGIYNEAGEPLKMLGVIFDVSDRKLAEQTL 1116 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 74/622 (11%), Positives = 166/622 (26%), Gaps = 94/622 (15%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + ++ + K+IG + + + + L Sbjct: 77 DGLILYCNKSFSNLLKQPLEKLIGSYFQFLISPHDTPLFQARVQQAEMGDRHPVEMFLLA 136 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G + +P+ L+ P+ + + ++ +K + E Sbjct: 137 RDG--VEIPVYLSINPLILDDSPIN----CLVITDLTEQK-RHEKTIASEKLARLILEQA 189 Query: 212 KGHSSVEKEKYDIFSQQS-------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 V I + P L + + S ++ +L Sbjct: 190 GEAILVCDHTGQIIRASAIAQQLWGENLLFQPFDRLGIFSFFQSNFSLVISQEKILSAAD 249 Query: 259 YPLLTS------------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + E+ + +F + L + + Sbjct: 250 IARNSPVKVPFSITPVLHGETYKGLEVEFERRDGQVLNLVLNARPLADQDNNFRGAVVIL 309 Query: 307 NHPSLSAYFDEGENLT---------------------------------------PETVD 327 + + + + +D Sbjct: 310 TNITQRKQAENALQAAKKDLEIKVVERTQELQVANYRLQLELLERERREKILQDQAQLID 369 Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 V + + + N +L + + + + PK + Sbjct: 370 LAHDAILTVDLNDAITFWNHGAAVLYGFSQTEALGKTLAQLLSTNFPKPLTEIKKELFEY 429 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 R + I Q + + + + + I + ++ ++ Sbjct: 430 GRWEGELI--------QQRGDGTLIFVASRWTVQRDLAGKPKGIMKINADITKSKQAEKA 481 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++L IL+ D I ++ I N+ K+FGY ++L K T+ L Sbjct: 482 LIYSSLRLSKILDIAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFD 541 Query: 507 SVMNHYLTEILSLDL--RQTLEK-ITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDI 561 SV + T + D R+ E+ G K+ + I KL Y+ + DI Sbjct: 542 SVYSEKFTNVPQSDEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKIYTAILRDI 601 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR----TP-LTAIIGFSE-VIKNQRF 615 SE K + L ++ K +A V + R P L +IG++E + F Sbjct: 602 SERKIAETSLREREERFRKVFEEGPIGMAIVGLDYRFIKVNPMLCQMIGYTESELLALTF 661 Query: 616 GPLGNPRYIEYANYIDRSGNLV 637 + +P + + + Sbjct: 662 SNITHP---DDLEIDVQLAQRL 680 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 43/522 (8%), Positives = 122/522 (23%), Gaps = 86/522 (16%) Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 D++ + I +L T+ G + + + L A P+ ++ F Sbjct: 246 SAADIARNSPVKVPFSITPVLH-GETYKGLEVEFERR-DGQVLNLVLNARPLADQDNNFR 303 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFS----------------------------HLH 208 G I+ + K + Sbjct: 304 GA--VVILTNITQRKQAENALQAAKKDLEIKVVERTQELQVANYRLQLELLERERREKIL 361 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + + + + ++ A + + Sbjct: 362 QDQAQLIDLAHDAILTVDLNDAITFWNHGAAVLYGFSQTEALGKTLAQLLSTNFPKPLTE 421 Query: 268 ---------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAY 314 + + + ++ + + + + Sbjct: 422 IKKELFEYGRWEGELIQQRGDGTLIFVASRWTVQRDLAGKPKGIMKINADITKSKQAEKA 481 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLS 367 + +D V + N + Y + + + Sbjct: 482 LIYSSLRLSKILDIAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFD 541 Query: 368 TLLDA---------PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 ++ K V R D T A A + ++ N E Sbjct: 542 SVYSEKFTNVPQSDEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKI-------- 593 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 I + + +I + + + + E G+AI+ + + N Sbjct: 594 -----------YTAILRDISERKIAETSLREREERFRKVFEEGPIGMAIVGLDYRFIKVN 642 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + ++ GY ++L F+ + + + ++ + K ++ Sbjct: 643 PMLCQMIGYTESELLALTFSNITHPDDLEIDVQLAQRLFKGEVP-FYKIEKRYLKKNQET 701 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576 + + + + Y + DI+ K+ + L ++ Sbjct: 702 IWVSLTGSIVRDRDGQPIYYIAMIEDITNRKRAEKSLQQYER 743 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 39/354 (11%), Positives = 100/354 (28%), Gaps = 64/354 (18%) Query: 277 TINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + ++ ++ + + + V++ Sbjct: 10 ELLAEIQSLRERLTASEDIVRAIQQGEVDALVISTAQGRKVFTLQSADLSYRLLVEEMQQ 69 Query: 332 P-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLSTLLDAPKLSDNNAIK-- 382 + + G + Y N SF L K I + + L A + Sbjct: 70 GAVVLSTDGLILYCNKSFSNLLKQPLEKLIGSYFQFLISPHDTPLFQARVQQAEMGDRHP 129 Query: 383 -PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + L D I ++ + + + + + + Sbjct: 130 VEMFLLARDGVEIPVYLSINPLILDDSPINCLVI-------------------TDLTEQK 170 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++ + ILE + I + + G I+ + +L+G E++L +PF Sbjct: 171 RHEKTI-ASEKLARLILEQAGEAILVCDHTGQIIRASAIAQQLWG---ENLLFQPFDRLG 226 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEK----------------------ITLGSTKEEKLL 539 + + + + + ++ ++L Sbjct: 227 IFSFFQSNFSLVISQEKILSAADIARNSPVKVPFSITPVLHGETYKGLEVEFERRDGQVL 286 Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 +L + + L + + +I++ KQ +N L AKK E + ++ L Sbjct: 287 NLVLNARPLADQDNNFRGAVVILTNITQRKQAENALQAAKKDLEIKVVERTQEL 340 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 48/408 (11%), Positives = 103/408 (25%), Gaps = 53/408 (12%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D +G + + + + G A +M G + V+ + ++ G+ Sbjct: 1134 RAD-NGLIIYANPKFEQMFGYDAGEMNGQHVAIVNYGNEQIEPEEVNQAIRTAVLQNGEF 1192 Query: 148 TL----WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 +GT + + P Y G + A + + Sbjct: 1193 AYQVHNVKKDGTPFWCSATCSVFKHPEY-------GDVMVAVHQDITDRTQAEAALRESE 1245 Query: 202 KKFSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 +KF E + + Y+I Q+S + H D Sbjct: 1246 EKFRQFAENIQDVFWMTDNQTQQLLYVSPAYEIIWQRSCETLYSNPLNWLAT----IHPD 1301 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 D + E + + + + + + +++ + S Sbjct: 1302 DRPQVEAAYIEQQKTGIYDREYRIVRPDNSIRWIRDRGFPIRDEAGNIIRMTGIAEDISD 1361 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + E A FL ++ + G S LL Sbjct: 1362 RKQTEVELAAAKEAAVAAN------------RAKSEFLANMSHEIRTPMNAILGFSDLLQ 1409 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + S RT +A + + L + + P + + E Sbjct: 1410 GSISDPQPRAYLNSIAASGRTLLALINDILDLSKIEAGKLQLQYEPVDVRSLVRE----- 1464 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTN 478 E +D + ++ + L I E I + + + N Sbjct: 1465 --IQEILDPK----ALKKSLSLLVEIDENVPTAI-LFDPIRLRQILFN 1505 >gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1122 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 105/541 (19%), Positives = 209/541 (38%), Gaps = 39/541 (7%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354 + E + L A + + + P+ + + + NP + Y Sbjct: 593 RDITAEKEAEAEKMGLIASLQKSQKKLALHFQQTPVGVIEWKVNFEVSEWNPGAEQIFGY 652 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + G LL L + + ++ + + L Sbjct: 653 SREEALGRNGI--ELLIPNTDLSYIHQLWAELSTNRGGR---RSTNENVRKDGKIILCEW 707 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI- 473 + + + + + + + ++ + + E + +I+ Sbjct: 708 YN-TTLIDDDGNVVGVASLVQDVTELQRIVGELRASEERFRQMAENIHEVFWMIDPNQKQ 766 Query: 474 ILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 IL + A +++G + + P + + + ++ + + + ++ Sbjct: 767 ILYVSPACEQIWGCSRQSLYENPQCLASAIHPDDRERVMSFIEK----NTQAEYDREYRI 822 Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + +R + DI++ K + + + A + KS Sbjct: 823 LRPDGSICWIRDRAFPIYNDVGEIYRIVGIAEDITQRKLAE-EFQKVAQSAVAANQAKSA 881 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTPL AIIG+S+ + + LG +I + I R+G +L +++D+LDI Sbjct: 882 FLANMSHELRTPLNAIIGYSD-LLKEDAEDLGAEEFISDLDRIQRAGKHLLGLISDILDI 940 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 SKIE+G+M L+ E + + + E I+ V+ + + SF +N+ + AD +QI Sbjct: 941 SKIEAGRMELYLENFNPVDLIEEVIATVEPLVMKNSNKLEVSFGSNLDEMYADPTKTRQI 1000 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTS--------NEEVI----------LRVRDTGVGMT 749 LN+LSNA FT G I I+ T N ++ +V DTG+GM+ Sbjct: 1001 LLNLLSNAAKFTKDG-TITITLTKDEKVGNEEIFNGDIESEGDYLCFLLFQVADTGIGMS 1059 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +LE +PF Q S + GTGLGL +++ G + S G++ + P Sbjct: 1060 ATQLEHLFQPFMQGDTSTTRQYGGTGLGLAISRHFCLMMGGDIEVESKLGSGSVFTVRLP 1119 Query: 810 L 810 + Sbjct: 1120 V 1120 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 70/245 (28%), Gaps = 31/245 (12%) Query: 339 GNLFYANPSFLLLTKYKS---VDDIEIAGGLSTLLDAPKLSDNNAI-----KPVMLYRSD 390 + N F+ +T +D + + ++ +++ Sbjct: 309 DFILDGNRQFVQVTPLSDGRGLDWLIVVVVPEADFMDEINANTRTTILLCLGALIVATLL 368 Query: 391 R------------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A+ +W E + + A F Q + Sbjct: 369 GILTSKWIVGPIERLSKAAEAFSRGEWEGELQVNRSQELGVLARSFNSMAGQLQESFATL 428 Query: 439 DTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R+ +++ ++ L +I++ +DG+ +I++ G I N A+ LF ++ K Sbjct: 429 EERVETATEELQEALVYLSAIVDNLADGLLVIDQNGKIARFNPALLILFDLSEINLEGK- 487 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 V +T+++ + + + ++ Sbjct: 488 -------EYQEVFGSEITQLMEHSKSCPRDVFTLEIPLAGGRTGKAAVTAILKDDNNLRG 540 Query: 556 LTMHD 560 + D Sbjct: 541 SLIRD 545 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 19/249 (7%), Positives = 62/249 (24%), Gaps = 13/249 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKR-QNTWY 144 W ++ + E + + G + +G ++ + + + L + Sbjct: 633 WKVNFE--VSEWNPGAEQIFGYSREEALGRNGIELLIPNTDLSYIHQLWAELSTNRGGRR 690 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +G + + + + G +V + +++F Sbjct: 691 STNENVRKDGKI--ILCEWYNTTLIDDDGNVVGVA--SLVQDVTELQRIVGELRASEERF 746 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + E + SP R + A D + Sbjct: 747 RQMAENIHEVFWMIDPNQKQILYVSPACEQIWGCSRQSLYENPQCLASAIHPDDRERVMS 806 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + ++ + + + + + N+ E + + + +E + Sbjct: 807 FIEKNTQAEYDREYRILRPDGSICWIRDRAFPIYNDVGEIYRIVGIAEDITQRKLAEEFQ 866 Query: 320 NLTPETVDK 328 + V Sbjct: 867 KVAQSAVAA 875 >gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 1637 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 139/739 (18%), Positives = 282/739 (38%), Gaps = 43/739 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D ++ ++ E+ + + +G + D L+R + Sbjct: 769 LDDDLRVRRVTPEISRLLSIEPND-LGRSFESFIHPIQDD------QFLERVRQARDERV 821 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + ALP Y RN E +G ++ VD RA L KF Sbjct: 822 ELEWEVSCRDSSYLVRALP-YLRNSEINGV----VIAFVDVDILRRAERDVLKFKFMADQ 876 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 I +K K +++ ++ + K+ L + Sbjct: 877 NIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSETDPKSFDDRLEKAHAKG 936 Query: 269 LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E + + ++ + + K+ + SL + L E V Sbjct: 937 GNLFESWLQQRDGTEFPVEVALTPVFLQGKQL--LFASIRDISLRKTHESQMRLLSEAVQ 994 Query: 328 KCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + + N F +T + + + G + + +DN Sbjct: 995 SAANGIVITDCSLEDHPISFVNKGFTDMTGFSEQEIL----GRNCRFLQGEHTDNE--TV 1048 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + R+ + + + N E ++ G++ + + Sbjct: 1049 LRIRRALGRGESVRELIKNYRKNGEPFWN-DLYITPVHDENGILTHFVGVQNDVTERIEA 1107 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502 R+ E + +L++T++G+ ++ G +N ++L GY I+ K + Sbjct: 1108 ARQTETNERTIRLLLDSTAEGLFGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQ 1167 Query: 503 QNTP---SVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555 P L + ++ + + + K+ + + + Sbjct: 1168 PCDPNGNPFEKDSLQILGAVRAGEAINRYDERFCRKDGESFPVEYWCHPIQEDGKIVGAV 1227 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +T DI Q +N+L AK A+ + KS FLA +SHE+RTPL+AI+GF+++++ Sbjct: 1228 VTFVDIETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP- 1286 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY + I R+G+ +L ++ D+LD+S+IE+ K VSL E +++ + Sbjct: 1287 ---DEGTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETM 1343 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732 ++ + + + + +PR I D ++QI +N+++NAI FTP G ++ + Sbjct: 1344 KMRTQDYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKG-RVEVVVRSEKI 1402 Query: 733 -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + ++L+V D G+G+ + +L +PF Q + R GTGLGL + K + +A G Sbjct: 1403 DDDSFLLLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGT 1462 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + ST +G+ I P+ Sbjct: 1463 IQVSSTEGEGSEFTIRLPV 1481 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 59/499 (11%), Positives = 146/499 (29%), Gaps = 58/499 (11%) Query: 89 IDAHGYLKEISEELPKTI----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 ID + + + + G + ++ M ++ + + +K+Q+ + Sbjct: 550 IDTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGA----AVTQAIKQQSAVH 605 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + P++G + + +L P + A L + Sbjct: 606 YQGIPSPVDGPDHVL--ELIVEPYH---------------------VPKLASSCVLIQFK 642 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + G + + +++ L + + L+ L TS Sbjct: 643 ASEMRTAFGDALTTSNESTESEGTLLDFSTAAHSRIEDLEQELSFNRQNLQATIEELETS 702 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E E+ N + + ++ L R + A D L Sbjct: 703 NEELQATNEEMVASNEELQSTNEELQSVNEELYSVNAELQVRVNEVNEANADMVNLLATT 762 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 V F+ + P L + D G P + D+ ++ V Sbjct: 763 RVG----VVFLDDDLRVRRVTPEISRLLSIEPNDL----GRSFESFIHP-IQDDQFLERV 813 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 R +R + + + N + ++ + + Sbjct: 814 RQARDERVELEWEVSCRDSSY-------LVRALPYLRNSEINGVVIAFVDVDIL------ 860 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+ E +V++ + + D + +++++G I NR + GY E+IL + + F + Sbjct: 861 RRAERDVLKFKFMADQNIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSET 920 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562 P + L + + + ++ + + L ++ DIS Sbjct: 921 DPKSFDDRLEKAHAKGGNL---FESWLQQRDGTEFPVEVALTPVFLQGKQLLFASIRDIS 977 Query: 563 EWKQEKNKLSHAKKIAEKE 581 K ++++ + + Sbjct: 978 LRKTHESQMRLLSEAVQSA 996 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 112/391 (28%), Gaps = 13/391 (3%) Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDD 252 KR D + + + SV S PPP R +N V + Sbjct: 491 KRRDVRLPIELRMPLANQSVSPVTPQTPSIVEPPPQRRNENLLEIYNVLLADKMPPSLVI 550 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + L + N+ K+ ++ ++ + S ++ + Sbjct: 551 DTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGAAVTQAIKQQSAVHYQGIP 610 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTL 369 + D +++ V+ +P S + + S + E G L Sbjct: 611 SPVDGPDHVLELIVEPYHVPKLASSCVLIQFKASEMRTAFGDALTTSNESTESEGTLLDF 670 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 A + + + R + + N + ++ Sbjct: 671 STAAHSRIEDLEQELSFNRQNLQATIEELETSNEELQATNEEMVASNEELQSTNEELQSV 730 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + ++ ++ + ++L T G+ ++ + + +S+L Sbjct: 731 NEELYSVNAELQVRVNEVNEANADMVNLLATTRVGVVFLDDDLRVRRVTPEISRLLSIEP 790 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 D+ + F F+ + + +E S ++ L + + Sbjct: 791 NDL-GRSFESFIHPIQDDQFLERVRQARDER----VELEWEVSCRDSSYLVRALPYLRNS 845 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + D+ ++ + + K +A++ Sbjct: 846 EINGVVIAFVDVDILRRAERDVLKFKFMADQ 876 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 13/148 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVS-------DILHIDPNNHIGDLL 137 + +D HG +E+ + +G +++G L +++ + D +G + Sbjct: 1129 LFGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVR 1188 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + +G + P++ PI + + G Sbjct: 1189 AGEAINRYDERFCRKDGESF--PVEYWCHPIQ-EDGKIVGA--VVTFVDIETRLQVENEL 1243 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + +E K + + Sbjct: 1244 REAKLAADAANEAKSHFLANMSHELRTP 1271 >gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1131 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 131/757 (17%), Positives = 267/757 (35%), Gaps = 36/757 (4%) Query: 71 ENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHID 128 E+ F+ + TW +DA G +S +G +++G M D+ + Sbjct: 240 ESEDRFEQLAEHSRTVTWEVDAGGLFIYVSNASASVLGYAPEELVGCMSFFDLHPEDGRE 299 Query: 129 PNNHIG-DLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 ++ R+ + + +G + + P+ G+RG Sbjct: 300 AFKSAAFEVFGRRGEFTNFENRALTRDGR--EIWLSTNGFPLLDGAGNLLGYRGNDT--D 355 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + + R + + S + E + Q ++ Sbjct: 356 ITAEKEARTQLAQREAMLSSMLENLPVDFWARDKDGRGIIQSRLSKEHWGDFCSANFDAQ 415 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYL 303 H + K + ++ ++E + + L Sbjct: 416 SRHSHNAEKWKAKHDRLYAGETIEQEEVLVLTDGRHRIFHSMGAPIVMQGEVVGILGINL 475 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 + A + L+ +D P ++Y +G L N LT Y + + Sbjct: 476 DITERRYIEAQLERERVLSKAIIDSVPGLLYLYEQNGRLVRWNRMHCELTGYSDRE-LGA 534 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + D P A + + A L T + + F Sbjct: 535 MHLMDWYRDDPASQQKVARAIERVL--EEGIGTEEAELQT--KDGRR---IPFFLTAVRL 587 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + GI + + + ++ + + +L LEA+SDG+ N + + + Sbjct: 588 ELEGRIYFTGIGIDITERKRSEEALRLSEERLALALEASSDGLWDWNFQTGEVYFSPRYL 647 Query: 483 KLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + GY ++ + L + + + LE + + + Sbjct: 648 GMLGYDPGDLELNITGWEKLLHPDDFEKTKRTELDHIERGEPFALEFRLRNKAGDWQWVM 707 Query: 541 LRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 R + + + T DI + K+ +N+L AK+ AE S KS+FLA +SHEIR Sbjct: 708 SRGKVVEWDAAGRPLRMVGTHVDIDQRKRMENELVKAKEAAEAASLAKSEFLANMSHEIR 767 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL I+G +++++ + ++ + +++D+LD+S++E+GKM + Sbjct: 768 TPLNGIMGMIQLLESGAR----DEEQHRTCAMALQATGRLTRLLSDILDLSRVEAGKMQM 823 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 EP +L +A+ +++ L A + + R F +P ++ D +Q+ +N++ NA Sbjct: 824 RIEPFNLRDALGQSVDLFNPIAMQAGLEFRHHFDPALPEFVVGDSVRFQQVLMNLIGNAF 883 Query: 717 HFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G + + + + V+ V D+G G+ + L +PF Q+ Sbjct: 884 KFTTKGF-VAVEAHPLPSHESDSVRVLFSVADSGRGIEDAALSALFQPFSQVTRGFTRDH 942 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +G GLGL + K ++ G + S P GT Sbjct: 943 QGAGLGLAITKRLIALMGGTMAVESEPGCGTTFSFSL 979 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 4/143 (2%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R + + + E + ++ G+ + + A + + GY E+++ L Sbjct: 236 RSLRESEDRFEQLAEHSRTVTWEVDAGGLFIYVSNASASVLGYAPEELVGCMSFFDLHPE 295 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----D 560 + + T++ + + L L + L D Sbjct: 296 DGREAFKSAAFEVFGRRGEFTNFENRALTRDGREIWLSTNGFPLLDGAGNLLGYRGNDTD 355 Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583 I+ K+ + +L+ + + Sbjct: 356 ITAEKEARTQLAQREAMLSSMLE 378 >gi|119488833|ref|ZP_01621795.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119454994|gb|EAW36136.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1205 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 136/834 (16%), Positives = 259/834 (31%), Gaps = 101/834 (12%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106 +F F + + +F+ I D G + + + + Sbjct: 394 STFNSVVFIATDISEYKQAEQTLQRHALIFEQIYDG---VIMTDLTGRIIDWNPGAERMF 450 Query: 107 GNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 G +++G V P + + +K+Q W + T T + Sbjct: 451 GYSHSEVVGKTSALVHYPEQTPMPTQTMLEHIKKQGYWLSEMTFIRENKTQGICDTIV-- 508 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPR------------------------------- 194 +PI+ E G+ H Sbjct: 509 VPIFDHQGETVAV--IGVYHDISDRKQAELELQQYRDHLEYLVDQRTSQLEKSNAKLQRE 566 Query: 195 --------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLT 244 + + + + + E + I + +V + Sbjct: 567 IEARAILAEELLASEARLAGILDNANDAIISVNEAHQIILFNKGAEKIFGYQSEEVLNQA 626 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDF-------HTINLNQYTKKQYFGTLQ---- 293 T + T + S + N ++ + LQ Sbjct: 627 LDLLLPRRFSATHCEHIKTFRKHSQTARNMGENREISGRRQNGQEFPAEASISRLQLGNT 686 Query: 294 -----NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPS 347 S + + E E + P+ F GN Y N Sbjct: 687 ITYTAILRDISERVAAFKERQQAETALRESEQRYATLAEVSPVGIFRSDAVGNCLYVNER 746 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + + G + TL + I+ DR R Sbjct: 747 WCQIAGLSLEQSLGQ-GWIQTLHPDD---RDRVIQAWKQAVCDRCSFQLEYRFQRT---D 799 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + E G + D + + ++ + S+LE + Sbjct: 800 GMITWVFGQAVVEIDIKGEIKGFVGSITDINDRKQAEATLQESERRWRSLLENVHLAVVG 859 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDLRQTLE 526 +N +GII N +L GY ++L + + + + Y EIL L + Sbjct: 860 LNDQGIIDYVNPFFLELTGYTQTELLGQDWFTTFLPASQRSPVYQYFQEILKQQLNSYYQ 919 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L + EEK+++ + DI+E + Sbjct: 920 NTILTKSGEEKIIAWNNTRLQSLQGDALGTMSIGEDITERYAIE--------------RM 965 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K++F++ VSHE+RTPLTAI G + + +PR S ++ +VND+ Sbjct: 966 KNEFISVVSHELRTPLTAIHGAL-NLLSTGLVAPESPRGQHVIKIAAESTERLVRLVNDI 1024 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 L++ ++E G++ L V+ + + A +Q+ AN I + +I AD + Sbjct: 1025 LELERLECGRIKLVKHCVNAAQLLRVAQDQMQVMANRTGIKLEI-LPQDI-EFEADGDRM 1082 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHT--------SNEEVILRVRDTGVGMTNYELEKA 756 Q+ N++SNAI F+ SG I +S V+ VRD G G+ ++E Sbjct: 1083 IQVLTNLISNAIKFSDSGSTIQLSVEAEWRTFGGETPIASVLFCVRDQGRGIPLEKMESI 1142 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ S + GTGLGL + +++V+ + G ++ S + + P+ Sbjct: 1143 FERFQQVDASDSRQKGGTGLGLAICRSIVEQHGGIIWVESVLDQESCFYFSIPV 1196 Score = 105 bits (261), Expect = 5e-20, Method: Composition-based stats. Identities = 43/366 (11%), Positives = 114/366 (31%), Gaps = 43/366 (11%) Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + H +D + E+ + F + + + + ++ + E Sbjct: 210 GFWATHIHPEDACRIFAEFPRVFEQGKHSYEYRFLHGDGTYHWIQDELRLVTDSQGKPLE 269 Query: 302 ----YLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVY---SHGNLFYANPSFL 349 ++ + E + P ++Y G + +AN ++ Sbjct: 270 IVGYWIDINVRKQAQFALKDSEIRYRSLAQRLHSITSNAPIYIYELDRQGRVLFANRTYE 329 Query: 350 LLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 +T+ + + ++ E ++ +++ + ++ S A +A+L Sbjct: 330 NVTQEQVLGNLLIDCFPPEKQPNITQIIEQVFTTGQVQSLEYIIPNSTGEIRAYTAQLAP 389 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 I W ++ F I + + + ++ ++ I E Sbjct: 390 I-WMNSTFNSVVF-----------------IATDISEYKQAEQTLQRH----ALIFEQIY 427 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 DG+ + + G I+ N ++FGY +++ K + + + E + Sbjct: 428 DGVIMTDLTGRIIDWNPGAERMFGYSHSEVVGKTSALVHYPEQTPMPTQTMLEHIKKQGY 487 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 E + K + + ++ HDIS+ KQ + +L + E Sbjct: 488 WLSEMTFIRENKTQGICDTIVVPIFDHQGETVAVIGVYHDISDRKQAELELQQYRDHLEY 547 Query: 581 ESSHKS 586 ++ Sbjct: 548 LVDQRT 553 >gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris DSM 8797] Length = 1362 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 143/807 (17%), Positives = 280/807 (34%), Gaps = 52/807 (6%) Query: 31 DNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNID 90 D F + S ++ + + + T N +S T D F+ + +D Sbjct: 127 DTKFGSSSSFRDLWIVN-PQGTVITATNDAYLSKTYAGD--PGFLEGKEHPRLDLPQEVD 183 Query: 91 AHGYLKE-----ISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY 144 G ++ E +G + L ++ + + + ++ + Sbjct: 184 --GRYLTYLVAPMNSEAGNLLGVLMVWLDVTPLKEILTNRVGLQKTGDLLVATQQGDHVR 241 Query: 145 GKTTLWPIEGTNLYVP---IDLAALPIYSRNR----EFSGFRGFGIVHVNRVDNDPRAL- 196 P + VP + A + + +SG R D A Sbjct: 242 Y--LFQPRDSEVWSVPISDVPAMAKALQDESGSEVLNYSGDRVLVSYRPVDYQPDLEAPW 299 Query: 197 ---GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 K ++ + + + F R T Sbjct: 300 GMIAKISLEEAYAPVTYLRKVLLLLQVGLMFFGMAVSFLVAR------RFTRPVLGLATS 353 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L E + ++ + + + + + Sbjct: 354 ASKIAKGNLDVRVPISSSDEVGMLGAAFNHMAEELSASREELEDRIEQRTAELK--ASQK 411 Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLL 370 + +D V GN + NP+ + + L Sbjct: 412 QLRRQSQILQSILDSMGDGVIVADQDGNSVFWNPAAEQIVGIGPQNVDPDKWSQIYGCYL 471 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 K + P+ + L +++T P N E Sbjct: 472 ADGKTMCPSRDLPLARAMRGESLDEVVLYLENPDIPEGTWISVTARPL--RNDRGELRGG 529 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + ++R N+ +++ + +IL T + IN + +I N FG+ Sbjct: 530 VIVMRDITESRANQEELQSRDEKNRAILATTHESYIAINEKSLICEWNEQAEVTFGWSYA 589 Query: 491 DILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKK 547 + + + + + + + + L L K ++ + + I Sbjct: 590 EAIGRSLEETIIPERYWLQHTHGIEHYLRSGEGPFLNKRLELSAMHRDGHEFPVELTITP 649 Query: 548 LPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 +P S + +HDI+ KQ + +L AK+ AE S KS FLA +SHEIRTP+ A+IG Sbjct: 650 VPQGSGFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIG 709 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E++ + N EY + SG +L ++ND+LD SKIE+G+ +L P L Sbjct: 710 MTELLLDTDL----NSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLR 765 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 E + + + + + A+ K + + ++P I+ D ++QI +N++ NAI FT G + Sbjct: 766 ENLGDTMRSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEG-E 824 Query: 725 IIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I++ + + ++ VRDTG+G+ + ++ + F Q+ S R GTGLGL + Sbjct: 825 IVLDVNYDFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAI 884 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807 A +++ GK ++ S KG+ Sbjct: 885 ASRLIEMMGGKIWVNSEVGKGSEFHFT 911 >gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1719 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 122/769 (15%), Positives = 249/769 (32%), Gaps = 67/769 (8%) Query: 85 FTWNIDA--HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 F ++D ++ + +G ++ G + H D L + T Sbjct: 982 FVIDVDENEDFRFVSLNPAHQRAVGFSLSEIYGKTPQEAQVPAWEAITQHYRDCLAARTT 1041 Query: 143 WYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + T+ Y + P+ + FR G K+ Sbjct: 1042 ISYQENVFLHGRETSWYTTLT----PLCNLEGRI--FRIIGTALEITELKRTERALKQAL 1095 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVSSLTEYYAHKDDVLK 255 ++ E + + + +K+ + +D L Sbjct: 1096 QQIDAHFENSPLGIVQWDKSFHVLRWSKQAEQMFGWSAEEVKSHFWQDWNFVHREDQDLV 1155 Query: 256 -TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + ++ T + + + LS + Sbjct: 1156 NAVTTAFMNGLITNQTIINRNVTKEGRVMICQWDSSAVFDEMGNLVSVLSFVQDITERKQ 1215 Query: 315 FDEGEN----LTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLST 368 + L ++ F+ + N + L + S DD+ G S Sbjct: 1216 AELELQKQKELRETIFNESTDAIFLVDPHTLLITDCNRRAVELFEVPSKDDLIGTEGRS- 1274 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 I+ + ++ + T K + Sbjct: 1275 --LQRYPFTTEEIEQITQEMDEKGFWSLELEYIT-----GKGNLFWGNIAAKPFVIADMR 1327 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + + E + G+A++N L NR++ ++ GY Sbjct: 1328 VNLIRVTDINTRKRAQEALRESEERFRRAFEDAAIGMALVNLHRRFLKVNRSLCEMIGYS 1387 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++LR F + L ++L T + +E +L+ + + Sbjct: 1388 EAELLRLTFEDITHPDDLETNLAALEQMLK-GEYSTYQVEKRYLHQEGRLIWAISSVSLI 1446 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 Y + + DISE + K +F++ VSHE+RTPLTAI Sbjct: 1447 KDQDHLPLYYVVQIQDISERHKL--------------DRMKDEFISIVSHELRTPLTAIR 1492 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ + + +VND+LD+ ++ESGK L +P + Sbjct: 1493 GSLGILESGVLNDEPL-TANRMLKVALNNSERLARLVNDILDLERLESGKTELVMKPCQV 1551 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +A+ V+ AN I I + ++ AD ++ Q +N+L N I F+ G Sbjct: 1552 SDLMEQAVESVEAIANLASIRINFTAVEA--QVWADFDAIVQTLINLLGNGIKFSDPGSM 1609 Query: 725 IIISTTHTSNE---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 I + ++ E ++ + D G G+ + +LE F Q+ S Sbjct: 1610 IWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQGRGIPSDKLESIFGRFQQVDVSDSR 1669 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + GTGLGL + K++++ + GK ++ S +G++ PL++ PHD Sbjct: 1670 QKGGTGLGLAICKSIIEQHNGKIWVESVVGQGSIFYFTLPLWEQEPPHD 1718 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 53/511 (10%), Positives = 139/511 (27%), Gaps = 41/511 (8%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 GY +++E + ++IG ++ I + +G+ L++ G + Sbjct: 470 GYYLDVNESFLEFSEYTREEIIGKTAAQLNFIADAQQDAALGEKLQKYGVVKGFEFDYRT 529 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + + L ++ + + E R I + + + Sbjct: 530 K--TGKLGTALLSIELVELDGEL---RVLTISKDITDRKQLEIALQASQTQLDDILNYCV 584 Query: 213 GHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP- 270 + + D +S + + S+ V + E Sbjct: 585 AAITSFRVLADKNWSINYLSAGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFAN 644 Query: 271 --------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + F+ N Q + + + + + + S +E + Sbjct: 645 IFAQQVGTYEYRFYHKNGTLRWFSQTNSSRWDEKQNCWIVTAVTSDISERKQTEEALQKS 704 Query: 323 PETVDKCPIP-------FFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + Y G Y +P+F + + + ++ A ++ Sbjct: 705 EFRFQQLASASPGVIYTVVEYPDGPVRYEYVSPAFEEIHEVPLTEILKDA----SITINQ 760 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D+ + + S + I + + + E + +G+ Sbjct: 761 MHPDDLSGYQQAVVESLKEMQPFR-HEWRIITPSGQVKWIQAHSRPERRENGE-IAWHGV 818 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREG--IILSTNRAVSKLFGYPV 489 + + + + ++ LC I I +G + A + Sbjct: 819 VLDITEKKQVEAQLRKTEQWLCQFNYHAPSVIYTIVQEADGLIRFEYISSACEAINELTA 878 Query: 490 EDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E +L + + + + S + + + T K+ L+ + Sbjct: 879 EQVLENAHVLLELIHPDDRATYGEAV--AKSAESLELFDHQWRIITPSGKVKWLQGKSQP 936 Query: 548 LPFSSCYSL---TMHDISEWKQEKNKLSHAK 575 S+ + DI+E KQ + +L + Sbjct: 937 ERRSNGAIAWYGVVIDITERKQIEARLQEQE 967 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 53/520 (10%), Positives = 137/520 (26%), Gaps = 43/520 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 D + + +S G A ++ + + ++ + + Q + Sbjct: 595 DKNWSINYLSAGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFANIFAQQVGTYE 654 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + GT + ++ + + + ++ + +F Sbjct: 655 YRFYHKNGTLRWFSQTNSSR--WDEKQNCWIVT--AVTSDISERKQTEEALQKSEFRFQQ 710 Query: 207 LHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTE 257 L G + +S+T H DD+ + Sbjct: 711 LASASPGVIYTVVEYPDGPVRYEYVSPAFEEIHEVPLTEILKDASITINQMHPDDLSGYQ 770 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + +E E Q Q + + + + Sbjct: 771 QAVVESLKEMQPFRHEWRIITPSGQVKWIQAHSRPERRENGEIAWHGVVLDITEKKQVEA 830 Query: 318 GENLTPETV----DKCPIPFF--VYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLST 368 T + + P + V Y + + + + + +E A L Sbjct: 831 QLRKTEQWLCQFNYHAPSVIYTIVQEADGLIRFEYISSACEAINELTAEQVLENAHVLLE 890 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L+ ++ + I + + + Sbjct: 891 LI-----HPDDRATYGEAVAKSAESLELFDHQWRIITPSGKVKWLQGKSQPERRSNG-AI 944 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKL 484 G+ + + + + +++ + + L SI E + I +I+ + +S N A + Sbjct: 945 AWYGVVIDITERKQIEARLQEQEIFLRSIYEGVEEPIFVIDVDENEDFRFVSLNPAHQRA 1004 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G+ + +I K ++ HY + + E + L + S Sbjct: 1005 VGFSLSEIYGKTPQEAQVPAWEAITQHYRDCLAARTTISYQENVFLH----GRETSWYTT 1060 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + L T +I+E K+ + L A + + Sbjct: 1061 LTPLCNLEGRIFRIIGTALEITELKRTERALKQALQQIDA 1100 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 39/307 (12%), Positives = 81/307 (26%), Gaps = 25/307 (8%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348 +L S ++ + + E + CP P + S G N SF Sbjct: 420 SLLTQSFNLTAAQLQQSFEQIKTALQQSEEKFTKVFRSCPDPISINSLMGGYYLDVNESF 479 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++Y + I + + K + Sbjct: 480 LEFSEYTREEIIGKTAAQLNFIADAQQDAALGEKLQKYGVVKGFEFDYR------TKTGK 533 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--- 465 A+ I + + + I + D + + ++ QL IL I Sbjct: 534 LGTALLSIELVELDGE---LRVLTISKDITDRKQLEIALQASQTQLDDILNYCVAAITSF 590 Query: 466 -AIINREGIILSTNRAVSKLFGYPVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + ++ I + + GY +++ ++ ++ I + Sbjct: 591 RVLADKNWSINYLSAGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFANIFAQ-- 648 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577 Q K L + DISE KQ + L ++ Sbjct: 649 -QVGTYEYRFYHKNGTLRWFSQTNSSRWDEKQNCWIVTAVTSDISERKQTEEALQKSEFR 707 Query: 578 AEKESSH 584 ++ +S Sbjct: 708 FQQLASA 714 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 30/365 (8%), Positives = 103/365 (28%), Gaps = 31/365 (8%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYAN 345 L + + L + + ++ C + ++ Y + Sbjct: 545 ELDGELRVLTISKDITDRKQLEIALQASQTQLDDILNYCVAAITSFRVLADKNWSINYLS 604 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 ++ Y + + + A ++ Sbjct: 605 AGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFANIFAQQVGTYEYRFY-----H 659 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + ++ + + + + + ++ + + A+ I Sbjct: 660 KNGTLRWFSQTNSSRWDEKQNCWIVTAVTSDISERKQTEEALQKSEFRFQQLASASPGVI 719 Query: 466 AII--NREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-D 520 + +G + A ++ P+ +IL K ++ + Q P ++ Y ++ Sbjct: 720 YTVVEYPDGPVRYEYVSPAFEEIHEVPLTEIL-KDASITINQMHPDDLSGYQQAVVESLK 778 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKI 577 Q T ++ ++ + + + DI+E KQ + +L ++ Sbjct: 779 EMQPFRHEWRIITPSGQVKWIQAHSRPERRENGEIAWHGVVLDITEKKQVEAQLRKTEQW 838 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNL 636 + + H + + E ++ + + E A + + ++ Sbjct: 839 LCQFNYHAPSVIYTIVQE-----------ADGLIRFEYISSACEAINELTAEQVLENAHV 887 Query: 637 VLDIV 641 +L+++ Sbjct: 888 LLELI 892 >gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1093 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 106/631 (16%), Positives = 221/631 (35%), Gaps = 26/631 (4%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + ++ +F Q R + + Sbjct: 325 SEERYRELVENAGSVIVRLDLLGRVVFCNAFGQRLFGQTQDQMFGRTIASLIDPPDDDEA 384 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + + N L+ S ++ E L Sbjct: 385 ESWDDILADVAGSAIGTRAFDRRHRTR--NGEAAWLAWSLRALRAPSGQAAEILCVGADI 442 Query: 310 SLSAYFDEGENLTPE----TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364 + +E + + + + Y +P +L + + A Sbjct: 443 TERKQVEEALAASEARYALVTRGANDGIWDWDLVTDTVYFSPRYLEILGFSPDAMPPRAE 502 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + L+ D + + +D + ++ + + +++ Sbjct: 503 TWTKLIHPD---DADIVLRENKRCADGEVDNFVVE-YRMRHKDGSYRWILGRGASLRDKY 558 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSK 483 + G + + ++ + QL I + GI R+G IL N ++ Sbjct: 559 GRIVRMAGTHTDVTRRKRDEEALRESQDQLAKIFRYSPVGISVTTRRDGRILDVNETGAR 618 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SL 541 +FG+ D++ + T P + E+ + + K K + Sbjct: 619 MFGHNKADVIGRTSTEIGLWARPEDRGALMAEMAAAG--SVVAKELDLRHKNGSPVVTLY 676 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + ++ S + DI+E K + L +K+ AE + KS+FL+ +SHEIRTP+ Sbjct: 677 SAVPIQVYGESGILAVLVDITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPMN 736 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I+G + V+ P ++ E I+ +G +L ++ND+LD+S+IE+G + + + Sbjct: 737 TILGMAGVLAASDLPP----KHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKA 792 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 + + +++ A K + +R +P R+ ++Q+ +N+L NA+ FT Sbjct: 793 CDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTD 852 Query: 721 SGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G +I++ + L VRDTG+G+ + F Q+ S G GL Sbjct: 853 QG-EIVLELGREDHADTGAWLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYGGVGL 911 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GL + +V G + STP +G++ + Sbjct: 912 GLAICNKLVHMMGGSIRVDSTPGQGSVFTVS 942 Score = 103 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 29/383 (7%), Positives = 83/383 (21%), Gaps = 31/383 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQNT 142 +D G + + + G +M G + + D D D+L T Sbjct: 342 RLDLLGRVVFCNAFGQRLFGQTQDQMFGRTIASLIDPPDDDEAESWDDILADVAGSAIGT 401 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G + + + + + + + + Sbjct: 402 RAFDRRHRTRNGEAA--WLAWSLRALRAPSGQ--AAEILCVGADITERKQVEEALAASEA 457 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLK 255 +++ + D P + + D++ Sbjct: 458 RYALVTRGANDGIWDWDLVTDTVYFSPRYLEILGFSPDAMPPRAETWTKLIHPDDADIVL 517 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSL 311 E E + + + + +L++ Sbjct: 518 RENKRCADGEVDNFVVEYRMRHKDGSYRWILGRGASLRDKYGRIVRMAGTHTDVTRRKRD 577 Query: 312 SAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E ++ + P+ V G + N + + + D I L Sbjct: 578 EEALRESQDQLAKIFRYSPVGISVTTRRDGRILDVNETGARMFGHNKADVIGRTSTEIGL 637 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P+ + + + +A L N + + + Sbjct: 638 WARPEDRGALMAE----MAAAGSVVAKELDLR--HKNGSPVVTLYSAVPIQVYGES---G 688 Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452 + + + + ++ + Sbjct: 689 ILAVLVDITERKAMEQALRRSKE 711 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 50/440 (11%), Positives = 117/440 (26%), Gaps = 35/440 (7%) Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 P +++ +G + + V D L I + + + K + Sbjct: 38 RPAFAQTGADAGPQP---LRHLTVVLDKDYPPYVFQTPEGGLQGILVDYWRLWEAKNGLP 94 Query: 226 SQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 P ++ + + + KY L + +++ + F +L + Sbjct: 95 VTLLPMEWNAAQDFMLQGKADVIDTLFETEARLKYYLFSEGYTTI-DVPVFVQKDLGGLS 153 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFY 343 + K + + + + V V+ Sbjct: 154 DAESLRGFPVGVKAGDASVGRLRDLDILSLVP--FDSYEALVRAAGDGRVTVFCADKP-- 209 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR---TCIAASARL 400 P+ L K+ DD +A TL +L + A Sbjct: 210 --PALHYLYKFGLEDDFRLAF---TLYSGQFHRAVRKGDAALLQLVEDGFSRITPAEYEA 264 Query: 401 HTIQWNREN-SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEI------- 449 +W + + T A + V R +R+ ++ Sbjct: 265 IDKKWRGTSLFQSATVRYVLLALVAVAAAALVLLSINAVLRRTVRRQTGKLQELLAAVGQ 324 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + ++E I ++ G ++ N +LFG + + + ++ Sbjct: 325 SEERYRELVENAGSVIVRLDLLGRVVFCNAFGQRLFGQTQDQMFGRTIASLIDPPDDDEA 384 Query: 510 N--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + ++ T T+ + L ++ L S DI+E Sbjct: 385 ESWDDILADVAGSAIGTRAFDRRHRTRNGEAAWLAWSLRALRAPSGQAAEILCVGADITE 444 Query: 564 WKQEKNKLSHAKKIAEKESS 583 KQ + L+ ++ + Sbjct: 445 RKQVEEALAASEARYALVTR 464 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 25/259 (9%), Positives = 65/259 (25%), Gaps = 13/259 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + +++E + G+ +IG ++ + + + + K Sbjct: 605 RDGRILDVNETGARMFGHNKADVIGRTSTEIGLWARPEDRGALMAEMAAAGSVVAKELDL 664 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + + V + +A+PI + G G ++ +R + + Sbjct: 665 RHKNGSPVVTLY-SAVPI-----QVYGESGILAVLVDITERKAMEQALRRSKEAAETANR 718 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 K S + + A + L ++ L Sbjct: 719 AKSEFLSTMSHEIRTPMNTILGMAGVLAASDLPPKHTEALRAIEAAGGTLLALLNDILDL 778 Query: 270 PEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + E I + ++ ++ L +L A + + Sbjct: 779 SQIEAGGLIMEEKACDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQ 838 Query: 325 -TVDKCPIPFFVYSHGNLF 342 V+ G + Sbjct: 839 VLVNLLGNAVKFTDQGEIV 857 >gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1224 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 141/779 (18%), Positives = 258/779 (33%), Gaps = 93/779 (11%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA G L ++ IG D + L + + Sbjct: 107 DAQGRLLAVTPLEKNLIGKDY------SFRD-----------YYQTALHTRKPVISEPF- 148 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG---------------------------FG 182 + P +P+ R +G G F Sbjct: 149 --VSTQEHRHPTIAFVVPVLDRGGALAGMIGGMIDLYQDNFLGKLAHARVGKSGYLYLFN 206 Query: 183 IVHVNRVDNDPRALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 + D + + K L + L + E QS R+K+ Sbjct: 207 TRRTIIMHPDQQRILKTDLPPGANRLLDQAIDGFEGSGETVTSHGLQSLTSFKRLKSMEW 266 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-------DFHTINLNQYTKKQYFGTLQN 294 L + + + LL + + + T ++ + + Sbjct: 267 ILAASFPQVEAYAPAREAKLLLALGLATALAASVLVCFFFVRRLTAPLLTFIRHVEGISD 326 Query: 295 NSKESFEYLSHRNHP------------SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNL 341 +E E +D+ P+ V G++ Sbjct: 327 QERELEPVAIQTGDEIGTLARAFNRMIQELRRQKESARELRLAIDQAPVTVMVTDRDGSI 386 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y NP+F +T Y + + + L + R Sbjct: 387 EYVNPNFTKVTGYSAEEALGENP----RLVKSGWHPREFYAEMWQTVLSGREWRGEMRNK 442 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + E ++ + + + + ++ +LE+T Sbjct: 443 R---KNGDLYWESASISSVKGESGEIRNFVAVKEDITQRKRAEEALIRSDERIRLLLEST 499 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEI---- 516 ++ I ++ G N A ++L GYP E++L K + + ++P + + + Sbjct: 500 AEAIFGMDLLGNCTFANHACARLLGYPGTEELLGKNMHLLIHHSSPDGTPNPVQKCPLYR 559 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573 + + + + ++ +T DISE K+ + +L Sbjct: 560 VLRGEQGLHNDDQVFWRADGTSFAVEYWSYPQLQDGELVGGVVTFFDISERKRAEEELRR 619 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A + AE + KS+FLA +SHEIRTP+ A +G ++K + + EY + Sbjct: 620 ATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGL----SDQQKEYLEKAQSA 675 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L+L ++ND+LD SK E+GKM L P LD +S+ ++ EK I Sbjct: 676 SDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVASAILGEKEIEFGAYVGEG 735 Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGM 748 +P +L D + Q+ LN+ NAI FT G ++ + + + V DTG+GM Sbjct: 736 VPEVLVGDPLRLGQVLLNLAGNAIKFTEKG-KVEVEIALLALEEKDATLRFSVTDTGIGM 794 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E PF Q NS R GTGLGL + + +V G+ ++ S P +G+ I Sbjct: 795 DAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQMWVESEPGRGSSFSFI 853 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 31/134 (23%), Gaps = 9/134 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145 D G ++ ++ K G A + +G V + + W G Sbjct: 380 TDRDGSIEYVNPNFTKVTGYSAEEALGENPRLVKSGWHPREF--YAEMWQTVLSGREWRG 437 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G + + + E F + R D++ Sbjct: 438 EMRNKRKNGDLY--WESASISSVKGESGEIRNF--VAVKEDITQRKRAEEALIRSDERIR 493 Query: 206 HLHEIKKGHSSVEK 219 L E Sbjct: 494 LLLESTAEAIFGMD 507 Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats. Identities = 19/222 (8%), Positives = 59/222 (26%), Gaps = 13/222 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNH------IGDLLK 138 + +D G + + +G +++G + + D + + +L+ Sbjct: 503 IFGMDLLGNCTFANHACARLLGYPGTEELLGKNMHLLIHHSSPDGTPNPVQKCPLYRVLR 562 Query: 139 RQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + W +GT+ ++ + P ++ E G G Sbjct: 563 GEQGLHNDDQVFWRADGTSFA--VEYWSYPQL-QDGELVG--GVVTFFDISERKRAEEEL 617 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 +R + K + + + +K S + + ++ Sbjct: 618 RRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGLSDQQKEYLEKAQSASD 677 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + ++ + E + + +N + Sbjct: 678 LLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVASA 719 >gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1447 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 130/730 (17%), Positives = 261/730 (35%), Gaps = 37/730 (5%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 S+E+ + G + + + N + L + + Sbjct: 731 LYWSDEIYRIFGCTPQEFVATYDTFLSYVHPDDSESVENAVKGALDGKPYSIDHRIIL-- 788 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G + + I+ FR G+V + + L E Sbjct: 789 AGGEERIVHEQ-GEVIFGE-GNVP-FRMNGVVQDITERKKVEKALELANAYNRSLIEASL 845 Query: 213 GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 I + +++++ + E Y + E Sbjct: 846 DPLVTIGPDGKITDVNKATELVTGHLRSELIGTDFSDYFTEPEKAKEGYKQVFREGLVRD 905 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETV 326 + + + ++ E + + Sbjct: 906 YALEIQHRDGHITPVLYNASVYRDKDWEVIGIFAAARDVTEYKRAEKALKLANAYNRSLI 965 Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + P + G + N S +T Y + I A + Sbjct: 966 EASIDPLVTIGPDGKITDVNNSTESITGYSRNELIGTD------FLDYFTEPEKAREGYQ 1019 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + I + + + ++ + + + + + + Sbjct: 1020 HVFQNGL---VRNYPLEILHKCGHLTPVLYNASVYRDETGKVIGVFAAARDITELKKAEE 1076 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K++ L +++E+++D I + +GII S N+ +++GY E+++ K ++ N Sbjct: 1077 KIQT----LANVVESSNDAIITESLDGIITSWNKGAEQVYGYLAEEVMGKNMSILESDNL 1132 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DI 561 + + + TL K+ +L++ + + + S + + DI Sbjct: 1133 KGEIKQLVDRVKQGKK--VQNHETLRLKKDGTILNISVTLSPVFDVSGKLVAISNIAGDI 1190 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K +N L H K++AE + K+DFLA +SHE+RTPL +IIGFS+++ Q +G L N Sbjct: 1191 TEKKISEN-LLHEKQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGEL-NR 1248 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + I SG +L+++N +LD+SKIE+ KM L++ L + +++ A++ Sbjct: 1249 KQLRAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVADK 1308 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I I + +I AD +I N++ NAI F+ + I V + V Sbjct: 1309 KNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGARKN-GNLVEITV 1367 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ + K KPF Q+ + + +GTGLGL L K +V+ + G + S +G Sbjct: 1368 TDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGEG 1427 Query: 802 TLIEIIFPLY 811 + P+ Sbjct: 1428 STFAFAIPIA 1437 Score = 134 bits (337), Expect = 7e-29, Method: Composition-based stats. Identities = 56/578 (9%), Positives = 146/578 (25%), Gaps = 69/578 (11%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFD--PIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 + + + + + + + FD P + ID + + + +G Sbjct: 415 EQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAI-----IDTEYKVVRANRAMAAKLGV 469 Query: 109 YAFKMIG----MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 + +G + ++ P+ LLK + + G ++ Sbjct: 470 TPEECVGLTCYRAIHGTNEPPSFCPHR---QLLKDGIEHTTEVCEDCLGG-----YFLVS 521 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 P++ + G + H R + +F L E + + Sbjct: 522 TSPLHDSEGKLIG--SVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIARFDRQNRH 579 Query: 225 FSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYP-----LLTSEESSLPEQEDFHT 277 + + KV T +D + ++ + Sbjct: 580 LYINPVSVEIYDHPQEKVIGKTHSELGRDPEQIKFWEEHHEKVFAIGKPETMEFEYTSPQ 639 Query: 278 INLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTPETVD--------- 327 + + + + E + E V+ Sbjct: 640 GKKYYFNTRIVPEFVDGEVTSVLAISRDIADIKEAEIRLKETLDNLEELVEDRTTQLEKA 699 Query: 328 ---------KCPIPFFVYSHGNL--------FYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + GN Y + + + + T L Sbjct: 700 YRSLKESEKGLAEAQKIAHLGNWNWNIVTDELYWSDEIYRIFGCTPQEFVAT---YDTFL 756 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 D+ +++ + D + H I + + Sbjct: 757 SYVHPDDSESVENAVKGALDGKPYSID---HRIILAGGEERIVHEQGEVIFGEGNVPFRM 813 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 NG+ + + + ++ +E+ S++EA+ D + I +G I N+A + G+ Sbjct: 814 NGVVQDITERKKVEKALELANAYNRSLIEASLDPLVTIGPDGKITDVNKATELVTGHLRS 873 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +++ F+ + + P ++ L + ++ + + Sbjct: 874 ELIGTDFSDYFTE--PEKAKEGYKQVFREGLVRDYALEI--QHRDGHITPVLYNASVYRD 929 Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 D++E+K+ + L A Sbjct: 930 KDWEVIGIFAAARDVTEYKRAEKALKLANAYNRSLIEA 967 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 31/294 (10%), Positives = 92/294 (31%), Gaps = 13/294 (4%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354 +E +E + + T D P + + AN + Sbjct: 410 REEKWEQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRAMAAKLGV 469 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + GL+ ++ + P D + ++ Sbjct: 470 TPEECV----GLTCYRAIHGTNEPPSFCPHRQLLKDGIEHTTEVCEDCL----GGYFLVS 521 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 P + + + + + + + + + + ++ E + D IA +R+ Sbjct: 522 TSPLH--DSEGKLIGSVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIARFDRQNRH 579 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 L N +++ +P E ++ K + + + ++ ++ +T+E Sbjct: 580 LYINPVSVEIYDHPQEKVIGKTHSELGRDPEQIKFWEEHHEKVFAIGKPETMEFEYTSPQ 639 Query: 534 KEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 ++ + RI+ + + + DI++ K+ + +L E+ ++ Sbjct: 640 GKKYYFNTRIVPEFVDGEVTSVLAISRDIADIKEAEIRLKETLDNLEELVEDRT 693 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 35/373 (9%), Positives = 88/373 (23%), Gaps = 19/373 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I G + ++++ G+ ++IG D + + Y Sbjct: 851 IGPDGKITDVNKATELVTGHLRSELIGTDFSDYFTEPEKAKEGYKQVFREGLVRDYALEI 910 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G P+ A ++ E G F K + L Sbjct: 911 Q-HRDGHI--TPVLYNASVYRDKDWEVIGI--FAAARDVTEYKRAEKALKLANAYNRSLI 965 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E I + + + Y + + + + + Sbjct: 966 EASIDPLVTIGPDGKITDVNNSTESITGYSRNELIGTDFLDYFTEPEKAREGYQHVFQNG 1025 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 E H + ++ + + + + +E Sbjct: 1026 LVRNYPLEILHKC-GHLTPVLYNASVYRDETGKVIGVFAAARDITELKKAEEKIQTLANV 1084 Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 V+ S G + N + Y + + + + SDN + Sbjct: 1085 VESSNDAIITESLDGIITSWNKGAEQVYGYLAEEVMGKNMSI-------LESDNLKGEIK 1137 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L + L ++ + + + + I + + +I++ Sbjct: 1138 QLVDRVKQGKKVQNHETLRLKKDGTILNISVTLSPVFDVSGKLVAISNIAGDITEKKISE 1197 Query: 445 RKMEIEVMQLCSI 457 + Q+ I Sbjct: 1198 NLL--HEKQMAEI 1208 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 5/158 (3%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E + + +A D IAII+ E ++ NRA++ G E+ + Sbjct: 418 ESSKRKRAEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRAMAAKLGVTPEECVGL 477 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 + ++L + T E + + Sbjct: 478 TCYRAIHGTNEPPSFCPHRQLLKDGIEHTTE---VCEDCLGGYFLVSTSPLHDSEGKLIG 534 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 HDISE KQ + L ++ + + D +AR Sbjct: 535 SVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIAR 572 >gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1350 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 135/749 (18%), Positives = 264/749 (35%), Gaps = 44/749 (5%) Query: 88 NIDAHGYLKE--ISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + + ++ + ++G R +V L + L Sbjct: 357 RLGPDDRFRLEACNQAAAAALQAEPDGLVGRRPEEVMPALQAARVEADLRRCLAVGEPIR 416 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +++ ++ + ++ +P+ + R F A + ++ Sbjct: 417 FESS---VDLDSGRRDREIVLVPLRNEKNRLD--RVFASFRDITHLRRAEAATRETNRML 471 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 EI + + + + V S Y +D + Sbjct: 472 LMAEEIAHVGHWRLDVRENRLTWSQEIYRIYGVDPDSGEQTVDSAVAAYHPEDQPVVAAA 531 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAY 314 + + + ++ + E + + Sbjct: 532 VADAIAHRRPFTLNLRILRPDGSVRHVVARGLCEEDETGEVAAIFGTLSDVTELRRVERE 591 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E +L T++ V S G + N + L + + +LD Sbjct: 592 AAETASLLATTLESMDQGLVVVSPEGRVEICNARAIALLDLPP-ELMAGKPTAGQVLDHQ 650 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 A + + A + +T + + +P + Sbjct: 651 WAKGEFAGTEESIRHLLQLGSIVLAPQAYTRTRPNGTVIEVRTMPMAGGS-------LVR 703 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + R+ + + + I E SD I +N + + A +L GY ED+ Sbjct: 704 TYTDITARRVAEEALRESETRYRLIAENVSDVITRLNLDLEWDYVSPACRELLGYEPEDL 763 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + + + L+ L T ++ + + I+ L + Sbjct: 764 VGTKPLDGIHPDDRACSAETFA-CLTTGLVDTATSRQRCRRRDGSYVWVEARIRLLRGAD 822 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 Y ++ D+SE +Q+ L A+ AE+ S K+DFLA +SHEIRTPL I+G+++ Sbjct: 823 GAPSGYVASLRDVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTD 882 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ A I +G +L IVND+LD SKIE+G++ L P LD V Sbjct: 883 LLLED---ATLGEGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALV 939 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 IS+V+ + +K I I T ++PR ++ D ++Q+ LN+L+NA+ FT +G + + Sbjct: 940 DNTISVVRGFVGKKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGS-VTL 998 Query: 728 STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 S + + V DTG+G+ + + + F Q+ +S GTGLGL ++K Sbjct: 999 SVSCLEPAGATAALRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKN 1058 Query: 784 MVDANMGKFYIFSTPAKGTL--IEIIFPL 810 +V+ G + S +KGT + P+ Sbjct: 1059 LVELMGGTIDVESEVSKGTTFWFTVTLPV 1087 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 45/427 (10%), Positives = 108/427 (25%), Gaps = 49/427 (11%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNK 239 GIV ++ + A + +HL S+ I + R+ Sbjct: 91 GIVQLSIERDGLDAFTRSAHPLLAHLAASSPQIRSIVIFDADGRITADSGGAVPRRVPQV 150 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V D P + L+ + + Sbjct: 151 VDRSFFSVHRDDPQAGLFISPAFRN--------------RLDGAWTIIVSRRINHADGRF 196 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 ++ +P+ F E + + AN S L++ ++ D Sbjct: 197 AGVITASMNPNYFRAFYETMKVGANGIVAL------------LAANGSALVVDPWRD-DL 243 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS----ARLHTIQWNRENSLAMTF 415 I L K + + +A L + + + Sbjct: 244 IGKPIARDGKLPEGKAGPDGTVVAETQAFGPERILAFRRAESLPLIAMVGLARDDALSPW 303 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NRE 471 + ++ + ++ +A++DG+ I + Sbjct: 304 RHQVLVLTGIALGVLGLTALTGLLLGRATARLRASEVLFRALFDASTDGLLICRLGPDDR 363 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 + + N+A + + ++ + + + + L L++ E Sbjct: 364 FRLEACNQAAAAALQAEPDGLVGRRPEEVMPALQAARVEADLRRCLAVGEPIRFESSVDL 423 Query: 532 ----STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 +E L+ LR +L + DI+ ++ + ++ Sbjct: 424 DSGRRDREIVLVPLRNEKNRL---DRVFASFRDITHLRRAEAATRETNRMLLMAEE---- 476 Query: 588 FLARVSH 594 +A V H Sbjct: 477 -IAHVGH 482 >gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 1560 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/775 (16%), Positives = 243/775 (31%), Gaps = 71/775 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149 G + + G A ++IG L + N + L + T Sbjct: 366 DGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPADRMAENQSIVLSALSGEAVMAFDTQR 425 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + + A P++ R G ++ R + + Sbjct: 426 IHADGHLF--DVSMTACPVHDRLGHVVGVAN--LIRDIRKRKAAEQSLLEFNAQLEKQVA 481 Query: 210 IKKGHSSVEKEKYDIFSQQSPPP-----------------------------HLRMKNKV 240 + + P M++ + Sbjct: 482 SRTAELEKARRALQTVLDSVPSMIGYWDRDLHCHIANRAYCSWFNVDPSGLIGKSMRSLL 541 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 P P + + L + Sbjct: 542 GEALFTANRPFIEAVLRGQPQTFERMIPRPNGQGVRHSLAHYIPDVVDGEVLGFYALVHD 601 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 L A E E L ++ +GN+ N +F L Y + + Sbjct: 602 VSELVEGRQKLDAALRENEALLRTIDEQLLCSI-TDRNGNIISINDNFCKLMGYTKDELL 660 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 GL + L D V S + + Sbjct: 661 ----GLDHRIMNSGLHDKTFWADVWATISAGGSWRGEVCNKA---KDGALYWLDSVLTPF 713 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479 + + + D + + + L S+L + + I + +G+I N Sbjct: 714 FGEDGSIDRYVALRIDITDRKKAEAERNRSNTLLRSVLASAREFSIIATDPDGVITIFNS 773 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-------------YLTEILSLDLRQTLE 526 KL GY E+++ K + + + + Sbjct: 774 GAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSDEFGVPIEGFRVFVHRSERDGVEA 833 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + K+ L + +++ + Y D+S K+ + L AK+ AE+ S Sbjct: 834 QEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEAS 893 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K FLA +SHEIRTP+ AI+G +++ P +Y + +L ++N Sbjct: 894 VVKGQFLANMSHEIRTPMNAILGMLTLVQRTALTP----HQADYVCKAHSAAGSLLGLLN 949 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+LD SKIE+GK++L P L+ + + ++ +K + + A ++P + D Sbjct: 950 DILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSFIGDD 1009 Query: 702 RSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758 ++Q+ LN+ NA+ FT G I+ + ++ + +R V DTG+G+ +L Sbjct: 1010 LRLRQVLLNLAGNALKFTDQGQVIVSVGVLAREDDRLTMRMAVSDTGIGIAADQLASIFG 1069 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLY 811 F Q S R G+GLGL + + +V+ G + S P +G+ I P+ Sbjct: 1070 AFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITLPVS 1124 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 65/483 (13%), Positives = 135/483 (27%), Gaps = 46/483 (9%) Query: 119 CDVSDILHIDPNNHIGDLLKRQNTW--------YGKTTLWPIEGTNLYVPIDLAALPIYS 170 ++++ + D + + T G + G V + Sbjct: 39 AELAETAASLELTRLSDAIAERITLYQYGLRGARGVIVTFGERGITREVFRGYSKT--RD 96 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 EF G RGFG + RV D + + E E++ I + Sbjct: 97 IGAEFPGARGFGFIR--RVPADREERFLAEARADGWPDFAIAQFTPHEGERFVIQYIEPA 154 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 +L+ + + LT + + D L + Sbjct: 155 QRNLKAVGLDIASEKNRREAALAAIDTGQVRLTGPITLVQASGDKSQSFLILLPIYRTLS 214 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 T + ++ + P G V + L L Sbjct: 215 TPETLAERRAQAFGWSYAPLNMPEVLSG---------------LVPNQDRL------ALT 253 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 L + + E +T A + + + + + + A H +Q Sbjct: 254 LRDVTNPAEAETVFTSNTDCAAAECVTKTLTRSIFGRVWEISVTVSPAYGHAVQR----- 308 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + ++ G + +R++ +L +I+E + D I Sbjct: 309 ---IAPWVVVSLGIGASILAAGFAAVIGLNQARRREIAQAQARLSTIVENSGDAIIGEAL 365 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +G I+ NRA LFGY +++ K L N + + +L + T Sbjct: 366 DGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPADRMAENQSI-VLSALSGEAVMAFDTQ 424 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + L + + + + + + DI + K + L EK+ + ++ Sbjct: 425 RIHADGHLFDVSMTACPVHDRLGHVVGVANLIRDIRKRKAAEQSLLEFNAQLEKQVASRT 484 Query: 587 DFL 589 L Sbjct: 485 AEL 487 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 68/264 (25%), Gaps = 25/264 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 D +G + I++ K +G +++G+ ++ LH + + +W G+ Sbjct: 635 TDRNGNIISINDNFCKLMGYTKDELLGLDHRIMNSGLHDKTFWADVWATISAGGSWRGEV 694 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G ++ L P + + + I A R + + Sbjct: 695 CNKAKDGALYWLDSVL--TPFFGEDGSIDRYVALRI--DITDRKKAEAERNRSNTLLRSV 750 Query: 208 HEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + S + + + S + V T H D + L Sbjct: 751 LASAREFSIIATDPDGVITIFNSGAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSD 810 Query: 264 SEESSLPEQEDFHTI----------------NLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + F + ++ + YL Sbjct: 811 EFGVPIEGFRVFVHRSERDGVEAQEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQ 870 Query: 308 HPSLSAYFDEGENLTPETVDKCPI 331 S F+ L + ++ + Sbjct: 871 DVSRRKEFERALVLAKQAAEEASV 894 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 13/154 (8%), Positives = 35/154 (22%), Gaps = 16/154 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + + K +G A +M+G + + + + G Sbjct: 762 TDPDGVITIFNSGAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSDEFGVPIEGFRV 821 Query: 149 LWPIEGTN--------------LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + ++ + L I + +G+ G + + Sbjct: 822 FVHRSERDGVEAQEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLG--VAQDVSRRKEFE 879 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + +K + + Sbjct: 880 RALVLAKQAAEEASVVKGQFLANMSHEIRTPMNA 913 >gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1650 Score = 396 bits (1017), Expect = e-107, Method: Composition-based stats. Identities = 125/774 (16%), Positives = 262/774 (33%), Gaps = 52/774 (6%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 ++EN F V W D G + + G ++ I + Sbjct: 511 ETENRFRSFMDHTPV-LAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAE 569 Query: 129 PNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE-FSGFRGFGIVHV 186 +L +G + + + + F G GI Sbjct: 570 VFRRNDQQVLATGQALETIEESVDPDG-QPHFWLTTKFT-FDDQTGQTFVG----GIALD 623 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + + + + ++ + P LR ++ + Sbjct: 624 ITERRKIERALEERESRLQFIIANSPDLIFIQDLEQRYIWLSHPSAPLRPEDCLGHTDRD 683 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 ++ + + + E T++ + + ++ + + Sbjct: 684 LLLPEEGARLMRIKQDVLDTGRRTTIELPLTLDGQRRVFDATYEPWRDANGTLVGLAGYV 743 Query: 307 NHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361 + + + + + + + +P L + + Sbjct: 744 RDITERKQAEIAHQADNQRLHWALQAAHGGAWDWDLSTDVAWWSPEMYALWGVEPETKMV 803 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + LS + V D + R+ + E +A A Sbjct: 804 LDNSLS---LVADQDRASLRANVERAIQDGRDLQCEFRI-RHPQHGERWMASWGRLVTDA 859 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + G+ + D + ++ ++ + ++E + I + +G+I N Sbjct: 860 DGLS---HLLGLSFDITDQKRMEQALKDSESRYRDLVENVNSVILRLAPDGLIAFANEYA 916 Query: 482 SKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + FGY E+++ +P TV + ++ + + + + + + I + + + Sbjct: 917 LRFFGYAAEELIGRPVTVLVPTVDSTGQNLSAMVQEILANSERYVHHINENLCHDGRRVW 976 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE--------------- 581 + K L +DI+E ++ + +L ++ E Sbjct: 977 MAWTNKALYDDRGRLIGVLAVGNDITERRRLEQELDRHRRHLEALVDERTAQLTEARARA 1036 Query: 582 ---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + KS FLA +SHEIRTP+ A++GF +++ P + I +G +L Sbjct: 1037 EAANQAKSAFLANMSHEIRTPMNAVLGFCYLLEQHALDPAS----ADLVRKIHNAGQALL 1092 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRI 697 D++ND+LD SKIE+G++ L P L E + ++ A +K + + + +I + Sbjct: 1093 DLINDILDFSKIEAGRLELEAAPFRLSELLDTLAGIMTAAAGDKPLELILTPPEADIEGL 1152 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + D ++Q+ +N+L NAI FT G +I H E+ VRDTG+G+ E Sbjct: 1153 IGDAGRLRQVLINLLGNAIKFTARGEVELRIECLAEHDDAVELRFAVRDTGIGIDPESQE 1212 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +PF Q S R GTGLGL +++ +V G I S P +G+ Sbjct: 1213 RLFQPFTQADVSTTRRFGGTGLGLSISRQLVRLMGGTLEIESQPGQGSTFHFSL 1266 Score = 100 bits (248), Expect = 2e-18, Method: Composition-based stats. Identities = 57/575 (9%), Positives = 151/575 (26%), Gaps = 36/575 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D IS G +IG + + L + Sbjct: 403 DRQMRYLAISRRWLADFGLEDSDLIGRGHYETFPDIPERWREAHRRALAGEVLGCDDDVF 462 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT L +L P Y + G F V + +A + + +F Sbjct: 463 VRQDGTVLRRCWEL--RPWYEFDGTLGGIVLFTDDVSPRKQAEQAQAAQRETENRFRSFM 520 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLK---TEKYPLLT 263 + + ++ ++ T++ ++ + +L Sbjct: 521 DHTPVLAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAEVFRRNDQQVLA 580 Query: 264 SEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + ++ +E + K F + L + +E E+ Sbjct: 581 TGQALETIEESVDPDGQPHFWLTTKFTFDDQTGQTFVGGIALDITERRKIERALEERESR 640 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P F+ ++ L+ + + L L + A Sbjct: 641 LQFIIANSPDLIFIQDLE------QRYIWLSHPSAP--LRPEDCLGHTDRDLLLPEEGAR 692 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 +M + D + + + G + + + Sbjct: 693 --LMRIKQDVLDTGRRTTIELPLTLDGQRRVFDATYEPWRDANGTLVGLAGYVRDITERK 750 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVF 500 + + + +L L+A G + + + + L+G E ++ Sbjct: 751 QAEIAHQADNQRLHWALQAAHGGAWDWDLSTDVAWWSPEMYALWGVEPETKMVLDNSLSL 810 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLT 557 + + + + + + L+ + + + + + Sbjct: 811 VADQDRASLRANVERAIQDG--RDLQCEFRIRHPQHGERWMASWGRLVTDADGLSHLLGL 868 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI++ K+ + L ++ + + + R++ + +I F+ + FG Sbjct: 869 SFDITDQKRMEQALKDSESRYRDLVENVNSVILRLAPD------GLIAFANEYALRFFGY 922 Query: 618 LGNPRYIE----YANYIDRSGNLVLDIVNDLLDIS 648 +D +G + +V ++L S Sbjct: 923 AAEELIGRPVTVLVPTVDSTGQNLSAMVQEILANS 957 Score = 90.1 bits (222), Expect = 2e-15, Method: Composition-based stats. Identities = 38/366 (10%), Positives = 88/366 (24%), Gaps = 23/366 (6%) Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 E+ + + +P P + + V L ++ L L + ++ Sbjct: 295 DEEAGLLYRYTPNP-SPLTDAVWPLACLDPCEEATLNVAGLSLRLRIQPAVGSVPVGPW- 352 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 L ++ R ++ E D P+ ++ Sbjct: 353 --------PVLVALLGLGVAVLVFVLLRERRRATSRLRRQEARLRLFFDHAPVALAMFDR 404 Query: 339 G-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 + +L + D + G T D P + + Sbjct: 405 QMRYLAISRRWLADFGLEDSD-LIGRGHYETFPDIP-----ERWREAHRRALAGEVLGCD 458 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQF-PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + Q P+ + + + + + S Sbjct: 459 DDVFVRQDGTVLRRCWELRPWYEFDGTLGGIVLFTDDVSPRKQAEQAQAAQRETENRFRS 518 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ++ T + + +G + NR + F ED K V ++ Sbjct: 519 FMDHTPVLAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAEVFRRNDQQV 578 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH 573 L+ LE I + + + DI+E ++ + L Sbjct: 579 LATGQA--LETIEESVDPDGQPHFWLTTKFTFDDQTGQTFVGGIALDITERRKIERALEE 636 Query: 574 AKKIAE 579 + + Sbjct: 637 RESRLQ 642 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 36/396 (9%), Positives = 91/396 (22%), Gaps = 24/396 (6%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 A + + E+ + + F P + + Sbjct: 142 ATERTTFEARQRAAGHADFIIRELSDAGLRPAGTRAEYFPVAQIEPLAGNEPVLGFDVGS 201 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + VL+ L ++ S+ + S Sbjct: 202 SPERLAVLERAWARGQPVASRPLTLLQEPDRQKGIVIFVPA--------SRPATFAGSTP 253 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + F G VD + E AG L Sbjct: 254 DARAPIRGFATGVMRLGTLVDTVMSKLALDDIEVTLL------------DPGVDEEAGLL 301 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 P + L + + + ++ ++ P+ Sbjct: 302 YRYTPNPSPLTDAVWPLACLDPCEEATLNVAGLSLRLRIQPA-VGSVPVGPWPVLVALLG 360 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + R ++ + +L + +A+ +R+ L+ +R FG Sbjct: 361 LGVAVLVFVLLRERRRATSRLRRQEARLRLFFDHAPVALAMFDRQMRYLAISRRWLADFG 420 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 D++ + + P L+ ++ + + + + Sbjct: 421 LEDSDLIGRGHYETF-PDIPERWREAHRRALAGEVLGCDDDVFVRQDGTVLRRCWELRPW 479 Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L D+S KQ + + ++ + Sbjct: 480 YEFDGTLGGIVLFTDDVSPRKQAEQAQAAQRETENR 515 >gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1041 Score = 395 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 125/659 (18%), Positives = 252/659 (38%), Gaps = 34/659 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 I H R ++ RA +D + E E I + P ++ Sbjct: 257 IAHHQRHNHAQRARVLIMDDNEPLGRFYQMLLELAEMEVVYIREAEELLPAIQRFKPEVL 316 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLP-----EQEDFHTINLNQYTKKQYFGTLQNNSK 297 L + Y + L+ + + LP E I + + Sbjct: 317 LLDLYMPDANGLEIAAVVRQSDSNADLPILLMVENNAGRRILDQTKESESFLIKPVQPGL 376 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-------FVYSHGNLFYANPSFLL 350 + + E +++ + GN+ + N F Sbjct: 377 MVRAVIERVRQRRQTVGRVEYMRSALHELEQLQLALNQHAIVSVTDQDGNITFVNQKFCQ 436 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I G + + + + + + + + + Sbjct: 437 TSGYTPNELI----GNNHRMLKSDQHPASFYQEMWATITQGQTWHGQVKN---RRKNGTT 489 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 ++ + + + + + + +L +IL+ T +G+ ++ Sbjct: 490 YWVSATIVPFLDGDGTPREYISVRTDVTAQKAAQERYRASEQRLRAILDNTHEGVVVMEA 549 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---- 526 G I N A +++FGY + D+ + L + + + + Sbjct: 550 SGQIEMLNPAAARIFGYTLADMPQPTIQWLLPEFPLTDILNDAHLHEGGGAGDVSHANLY 609 Query: 527 KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + + L + + L S+ + DI+ K E+ +L AK++AE+ S+ Sbjct: 610 REMAANRSDGSRMLLGVSVSSFHLEESAVCVAVVRDITARKMEEIELKQAKEVAERASAA 669 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FL+ +SHE+RTP+ AI+GF++V+++ PL E I ++G +L+++ND+ Sbjct: 670 KTRFLSSMSHELRTPMNAILGFAQVMQSDPNEPLS-ESQRECTREIIQAGGHLLELINDV 728 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701 LD++KIE +++L PV + E + EA++LV AN K I + + + AD Sbjct: 729 LDLAKIEENRISLKMAPVHVQEVIREAVALVTPMANRKGIRLYHGMGEGVCERCDVQADR 788 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +KQI +N+ +N + + GG++ IS + VRDTG+G+ + +PF Sbjct: 789 TRLKQILINLATNGVKYNREGGEVEISCRLAEAGRARIEVRDTGIGIAALKQGDIFEPFH 848 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPH 817 ++ EGTG+GL + K +V+A G + S +G+ P + + PH Sbjct: 849 RLVEDGT--IEGTGIGLSIVKRLVEAMGGTLGLESQEGQGSRFWFQLPNSGICSPTKPH 905 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 23/253 (9%), Positives = 61/253 (24%), Gaps = 13/253 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 D G + ++++ +T G ++IG + SD + + + TW+G+ Sbjct: 421 TDQDGNITFVNQKFCQTSGYTPNELIGNNHRMLKSDQHPASFYQEMWATITQGQTWHGQV 480 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 GT + +P + + + + + +++ + Sbjct: 481 KNRRKNGTTY--WVSATIVPFLDGDGTPREY--ISVRTDVTAQKAAQERYRASEQRLRAI 536 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + V + I M D+L Sbjct: 537 LDNTHEGVVVMEASGQIEMLNPAAARIFGYTLADMPQPTIQWLLPEFPLTDILNDAHLHE 596 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGE 319 + G ++ +ES ++ + + Sbjct: 597 GGGAGDVSHANLYREMAANRSDGSRMLLGVSVSSFHLEESAVCVAVVRDITARKMEEIEL 656 Query: 320 NLTPETVDKCPIP 332 E ++ Sbjct: 657 KQAKEVAERASAA 669 >gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1253 Score = 395 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 137/751 (18%), Positives = 280/751 (37%), Gaps = 51/751 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G E ++ +G + + +R+ D + + Q +T Sbjct: 38 ADGSTLEFNQVSCAQLGYTSEEFARLRISDYEVQESAEDVAAHIRRVLTQGRDEFETQHR 97 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHE 209 +G + V + ++ L + R +V R D R + ++ Sbjct: 98 HKDGRVIDVSVAVSCLDLGERP------VLLAVVRDISRRKQDERQAHQAEERLQLATEA 151 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTEKYPLLT 263 K G + ++ + + ++ + V T +K + L+ Sbjct: 152 AKLGIWDYDIQQDRLIWDERMFQLYGLEPREFGYRFVDWSTLVLPESLQRVKADFQALVE 211 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GE 319 S + + + T + ++ + + + E Sbjct: 212 SGRPFDVKFQIRRPSDGEIRTLRGLARVTHDDQGRAIRVVGVNEDITEFQAVQREILDRE 271 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + ++ + V + G Y +P L+ Y + + P+ Sbjct: 272 QRLQQLAEQSRTVTWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYD---LHPEPGRE 328 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + + ++ I + ++ + + G + + Sbjct: 329 AFREAIFQAIA--QQLKFQGHVNPIIRKDGRVIWVSTNAIPVTDDRGLLLGYRGSDVDIT 386 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDIL 493 + + K +E E + I E T +A+ +++ I N A ++ + ++ Sbjct: 387 EAKYAKEALEAEKERFRGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQAVI 446 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + T + L + Q + ++++L + R S Sbjct: 447 GRCLTECFPAAIEMGLVDMLRRVNLTGQTQYM---PSAYYQDDRLQAWRENTIFKLSSGE 503 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +D++E K+ + AE+ S KS FLA +SHEIRTP+ A+IG S+++ Sbjct: 504 VVAVYNDLTEIKRAQE-------AAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLET 556 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + + +Y I S L+L I+ND+LD SKIE+GK++L +P SLD+ + + + Sbjct: 557 PL----DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRT 612 Query: 674 LVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L A+ + I + A +++ R+ D ++Q+ +N+LSNA+ FT G Q+++S Sbjct: 613 LFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG-QVVLSIRQL 671 Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + VRDTG+G+ + + KPF Q +S R GTGLGL +++ +V+ Sbjct: 672 DAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVEKM 731 Query: 789 MGKFYIFSTPAKGTLIEI--IFPL-YDTSHP 816 G + STP G+ P+ D + P Sbjct: 732 GGTLVLESTPGAGSRFYFDLTLPVSSDQTRP 762 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 6/148 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498 I + + ++ ++ E D +I+ +G L N+ GY E+ R + Sbjct: 7 RSIAATEAARQDVEFRTLFEVYPDATILIDPADGSTLEFNQVSCAQLGYTSEEFARLRIS 66 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556 + Q + + ++ +L+ E T K+ +++ + + + L Sbjct: 67 DYEVQESAEDVAAHIRRVLTQGRD---EFETQHRHKDGRVIDVSVAVSCLDLGERPVLLA 123 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DIS KQ++ + A++ + + Sbjct: 124 VVRDISRRKQDERQAHQAEERLQLATEA 151 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 112/390 (28%), Gaps = 43/390 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTW 143 TW +DA G +S G +++G R D+ + I + +Q + Sbjct: 285 TWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYDLHPEPGREAFREAIFQAIAQQLKF 344 Query: 144 YGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL 200 G + +G + + A+P+ G+RG I A +R Sbjct: 345 QGHVNPIIRKDGR--VIWVSTNAIPVTDDRGLLLGYRGSDVDITEAKYAKEALEAEKERF 402 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLK 255 F + + + IF+ +P R LTE + ++ Sbjct: 403 RGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQAVIGRCLTECFPAAIEMGL 462 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + + ++ + Q ++ L S E ++ N + Sbjct: 463 VDMLRRVNLTGQTQYMPSAYYQDDRLQAWRENTIFKL-----SSGEVVAVYNDLTEIKRA 517 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E A FL ++ + GLS LL L Sbjct: 518 QEAAERASR-------------------AKSQFLANMSHEIRTPMNAVIGLSDLLLETPL 558 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + S R + + L ++ PF + + G E Sbjct: 559 DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEA 618 Query: 436 EDVDTRI-------NKRKMEIEVMQLCSIL 458 + D + + ++E + ++L +L Sbjct: 619 DARDIELIFDLAVSSLHRVEGDALRLRQVL 648 >gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str. Paraca] Length = 1081 Score = 395 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 153/742 (20%), Positives = 278/742 (37%), Gaps = 71/742 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G ++++ + +G +++G RL D + +L K+Q Sbjct: 259 LDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFELFKQQGYLKDMLL 318 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + P+ L +Y+ E+ R + + ++ + Sbjct: 319 EMISSNGH-VFPVLLNYSAVYNPQGEYLYSR--STLFDITDLKSAQIALEKNHNLLQSIT 375 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + E S L + + +D+ Sbjct: 376 LAQSQFITSENRLTIFDGLLS--SLLTLTDSEYGFIGEVMFRDN---------------- 417 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 T ++ F ++ +S+ + F + + D Sbjct: 418 ------------GGATMEETFLKIRGVPYLKTHSISNVAWDEATEKFYQENHEEGMEFDN 465 Query: 329 CPIPF-FVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 F V G AN PS L++ L P S + + V + Sbjct: 466 MNTLFGAVIMTGKPVIANSPSSDPRRGGTP----NGHPPLNSFLGLPFFSSSTLVGIVGI 521 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 H + + +T + + + + + I K Sbjct: 522 ANKPGG-------YHEEMIDYLQAFLVTCGNLIEGYRLHRKRNEAEEAKKAAEQEIAK-- 572 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505 QL SI EA DGIAI+ + N A +FGY ED++ + Sbjct: 573 ------QLASI-EAAGDGIAIVQDDL-YQYVNHAHLVMFGYSEPEDLVGHSWRKIYSPTE 624 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + + I+ D T + + ++ + + + L + DIS+ + Sbjct: 625 IQRFENEVFPIVMRDRYWTG--EAIATRQDGTSFAEELSLT-LTEDNLLICVCRDISDRR 681 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + KL + + + K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R + Sbjct: 682 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 740 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +L+++ND+LD++KIE+G+M L S+ +I+ ++ A +K I Sbjct: 741 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 800 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVIL 739 I +P + D R ++Q+ +N+L+NA+ FTPS G+I + V Sbjct: 801 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 860 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L K KPF QI ++ + EGTGLGL L K +V+ + G + S Sbjct: 861 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 920 Query: 800 KGTLIEIIFP----LYDTSHPH 817 G+ P L T+ PH Sbjct: 921 SGSQFIFEIPCDDILIGTNTPH 942 Score = 112 bits (279), Expect = 4e-22, Method: Composition-based stats. Identities = 44/394 (11%), Positives = 104/394 (26%), Gaps = 24/394 (6%) Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 +I + H + + + Y I+ L V +D L E Sbjct: 4 DISQNHLTWDDQMYKIYGVSP----LECPQTVELWKNSLHPEDAELTQAILQESLRGERE 59 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---- 324 + + + K ++N E + + S + Sbjct: 60 FNPEFRIVRPDGSIVFIKANALIIRNPEGEPQRMIGTNVDITESKQAESDRQQLLRELSD 119 Query: 325 ---TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D I + G + Y N F ++ Y S + I G S + + Sbjct: 120 LKLAIDHSAIVAVTDASGVITYVNNRFCEISGYSSEELI----GKSHRIVNSRCHPPGFF 175 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + S + + N + I + + Sbjct: 176 ANLWRTISSGKVWHGEICN---RSKNGSIYWTESTIVPFLNSHKKVSQYLAIRFDITARK 232 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++ ++ + G ++ EG + N + GY E +L + FL Sbjct: 233 QAEARLLDYSHEIEDLYNKAPCGYHSLDAEGRYVKVNDTELQWLGYSREQLLGRRLADFL 292 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-- 559 ++ + + + + + + + + + L Sbjct: 293 TPDSREIFESNFELFKQQGYLKDMLLEMI--SSNGHVFPVLLNYSAVYNPQGEYLYSRST 350 Query: 560 --DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 DI++ K + L + + + +S F+ Sbjct: 351 LFDITDLKSAQIALEKNHNLLQSITLAQSQFITS 384 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 25/263 (9%), Positives = 66/263 (25%), Gaps = 15/263 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYG 145 DA G + ++ + G + ++IG V+ ++ + W+G Sbjct: 133 TDASGVITYVNNRFCEISGYSSEELIGKSHRIVNSRCHPPGF--FANLWRTISSGKVWHG 190 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G+ + +P + +++ S + I A + Sbjct: 191 EICNRSKNGSIY--WTESTIVPFLNSHKKVSQY--LAIRFDITARKQAEARLLDYSHEIE 246 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L+ + + R + L ++ + + L Sbjct: 247 DLYNKAPCGYHSLDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFEL 306 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + + N + + + + N E S + Sbjct: 307 FKQQGYLKDMLLEMISSNGHVFPVLLNYSAVYNPQGEYLYSRSTLFDITDLKSAQIALEK 366 Query: 322 TPETVDKCPIP--FFVYSHGNLF 342 + + F+ S L Sbjct: 367 NHNLLQSITLAQSQFITSENRLT 389 >gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 1004 Score = 395 bits (1016), Expect = e-107, Method: Composition-based stats. Identities = 131/765 (17%), Positives = 264/765 (34%), Gaps = 64/765 (8%) Query: 87 WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D L S+E+ + G + +S ++ D + Sbjct: 267 WRWDLITHTLTY-SDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAVQGRAD 325 Query: 146 KTTLW--PIEGT------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + +G V + P G+ Sbjct: 326 EIIYRIQLKDGQIRTIRAQWEVTVTNEGRP----------MEMVGMAQDITEQVMIEQQS 375 Query: 198 KRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDV 253 + K+ + E S + + R + V + T Y + +D+ Sbjct: 376 LENENKYKLITENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSTFDYVYAEDI 435 Query: 254 LKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + P + + + + + E +S S Sbjct: 436 APLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEVNCKYISTQGGQKNEIISIARDISER 495 Query: 313 AYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + E E + P + + G+ AN + LT Y + I Sbjct: 496 KLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIG------ 549 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P +++ + + + + + I S L I + T + E Sbjct: 550 -MYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTINIPIFVD--DEV 606 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + GI + + +++ +L +L S+GI ++ G + N A + + Y Sbjct: 607 VGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDY 666 Query: 488 PVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 + +P +++ + L + + + + +I L + Sbjct: 667 EPATTIGRPCDQIIKEIRHDGTFYRGEDSPLVQAVKQGIPLSRAEIVLWR-GDGTSFLAD 725 Query: 543 IIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + DI++ + ++ AK+ AE+ K++FL +SHE+RTP Sbjct: 726 YQVNPIWDQGERKGAVMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTP 781 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + IIG E++ + Y + + S +L I+N++LD SKIE+G M L+ Sbjct: 782 MNGIIGMIELLSTTEL----DEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNH 837 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRIL-ADLRSVKQIALNILSNAIH 717 EP+ L + + L A EK + + + + N+P ++ D ++Q+ +N++SNAI Sbjct: 838 EPIDLRSLLEVVVDLFSAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNLISNAIK 897 Query: 718 FTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G I ++ T + +V+DTG+G+ + F Q+ S + Sbjct: 898 FTHEGS-ITLNVEGLRRTGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHPSLNRKYG 956 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 GTGLGL ++K +V+ G + S G+ P + H Sbjct: 957 GTGLGLAISKKLVELMGGVIGVESRENVGSSFYFTIPTHTLQDVH 1001 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 48/506 (9%), Positives = 134/506 (26%), Gaps = 27/506 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G ++ IS +G +M+G + + G L +++ + Sbjct: 155 ADGIIEYISPSATDILGYTQEEMMGQHRGKYYHQVDSEQMKEPGKLFSENDSF--VRRIR 212 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 EG Y+ + + I E G + Sbjct: 213 HKEGH--YLWFETSFQLIRGAQGEIDKVLAIG--RNITKRKTDEDTLAHAQRIAKIGSWR 268 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + ++ + N + ++ + L E+ + + Sbjct: 269 WDLITHTLTYSDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERL--EQVVRTAVQGRADE 326 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + T + + N E + + ++ Sbjct: 327 IIYRIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQDITEQVMIEQQSLENENKYKLIT 386 Query: 331 IPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + Y +PS L Y+ + + T +++ A Sbjct: 387 ENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVG------TSTFDYVYAEDIAPLQD 440 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L + I + + + Q + I + + ++ + Sbjct: 441 YLENCLEGKMLTPITFRYIHKDGRHI-WFEVNCKYISTQGGQKNEIISIARDISERKLME 499 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 K++ + S+ E + +N +G ++ N+ + +L GY +++++ F + + Sbjct: 500 FKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEK 559 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 + + + + K+ + + + I + DI Sbjct: 560 DMARTLFHFNQAKEGIPQS---YDLTIIHKDGRPIEINTINIPIFVDDEVVGVYGITRDI 616 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587 +E + ++ + + S+ Sbjct: 617 TERIRTMEEIKKLSRELTLLLNTVSE 642 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 59/496 (11%), Positives = 154/496 (31%), Gaps = 33/496 (6%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLWPIEGTN 156 +++ + + ++ ++ ++ + ++ + L+ +T ++ +G Sbjct: 34 VNDRFCEITESKRSDLLQLKPSEIQVLSNLSFQQILQSLIYDPTSTLSRESYFIRQDGRQ 93 Query: 157 LYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 ++V + ++ L P R G V + D+ + + + + Sbjct: 94 VHVAVSISLLEPPSRDRTPWIMCCLEPGTVQEGTTLP----PIIKNDELLALISKSGQDL 149 Query: 215 SSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 S+ I + + + Y H+ D + ++ L SE S Sbjct: 150 ISISSADGIIEYISPSATDILGYTQEEMMGQHRGKYYHQVDSEQMKEPGKLFSENDSF-- 207 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + F ++ E + L+ + + ++ I Sbjct: 208 VRRIRHKEGHYLWFETSFQLIRGAQGEIDKVLAIGRNITKRKTDEDTLAHAQRIAK---I 264 Query: 332 PFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + + L Y + + Y+ ++ IE L P+ D ++ V+ Sbjct: 265 GSWRWDLITHTLTY-SDEMRRIYGYQ-INAIEPNHDTLMSLVIPE--DRERLEQVVRTAV 320 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 A ++ IQ + M G+ + + + +++ Sbjct: 321 QGR---ADEIIYRIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQDITEQVMIEQQSLE 377 Query: 450 EVMQLCSILEATSDGI--AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + I E + D I + I+ L + + L GY E+++ ++ + Sbjct: 378 NENKYKLITENSLDFISRSTIDC-FTFLYCSPSCYALLGYRPEEMVGTSTFDYVYAEDIA 436 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + YL L + + + K+ + + + K + DISE Sbjct: 437 PLQDYLENCLEGKMLTPITFRYI--HKDGRHIWFEVNCKYISTQGGQKNEIISIARDISE 494 Query: 564 WKQEKNKLSHAKKIAE 579 K + KL +++ Sbjct: 495 RKLMEFKLKESEQRYR 510 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 51/342 (14%), Positives = 105/342 (30%), Gaps = 47/342 (13%) Query: 323 PETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIE----IAGGLSTLLDAPKL- 375 + DK P + + + N F +T+ K D ++ LS L L Sbjct: 11 EQMFDKLPFGAILISAVDEPVAMVNDRFCEITESKRSDLLQLKPSEIQVLSNLSFQQILQ 70 Query: 376 -----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + R D + + + ++ + E Sbjct: 71 SLIYDPTSTLSRESYFIRQDGRQVHVAVSISLLEPPSRDRTPWIMCCLEPGTVQEGTTLP 130 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 I+ + L I ++ D I+I + +GII + + + + GY E Sbjct: 131 PIIKND---------------ELLALISKSGQDLISISSADGIIEYISPSATDILGYTQE 175 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +++ + + Q M D + KE L + + Sbjct: 176 EMMGQHRGKYYHQVDSEQMKEPGKLFSENDS-----FVRRIRHKEGHYLWFETSFQLIRG 230 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV--SHEIRTPLTAII 604 + +I++ K +++ L+HA++IA+ S + S E+R I Sbjct: 231 AQGEIDKVLAIGRNITKRKTDEDTLAHAQRIAKIGSWRWDLITHTLTYSDEMR----RIY 286 Query: 605 GFSEVIKNQRFGPLGN---PRYIEYANYIDRSG--NLVLDIV 641 G+ L + P E + R+ +I+ Sbjct: 287 GYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAVQGRADEII 328 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 27/271 (9%), Positives = 69/271 (25%), Gaps = 27/271 (9%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F ++P ++++ G ++ L + G ++IGM + + Sbjct: 513 FEYNPSA-----VYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEKDMARTLFH 567 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDN 191 + K T+ +G PI++ +PI+ + E G +GI Sbjct: 568 FNQAKEGIPQSYDLTIIHKDGR----PIEINTINIPIFVDD-EVVGV--YGITRDITERI 620 Query: 192 DPRALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 K+L ++ + L + + + + R +++ Sbjct: 621 RTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDYEPATTIGRPCDQII 680 Query: 242 SLTEYY-AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY--FGTLQNNSKE 298 + + S E + + Q Sbjct: 681 KEIRHDGTFYRGEDSPLVQAVKQGIPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGA 740 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + + + E + Sbjct: 741 VMVFRDITDEKEIIRAKENAERADQAKTEFL 771 >gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1287 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 132/742 (17%), Positives = 262/742 (35%), Gaps = 39/742 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + I G +S G+ + +G + + + Sbjct: 273 LFTISPDGVFTYVSPSWTSMYGHTVEETVGRSFTEFIHPEDFHICFEALRITAETGVPVP 332 Query: 145 G--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G + + +G+ + P+ + +R A+ Sbjct: 333 GGVEHRIRHRDGSWSWSNTSANIDPV--SKNIILTSHDITELRNSRERLKELAIVASNTT 390 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + K + V K + + E D + + Sbjct: 391 DYIVITDHKGFITWVNKAYETHTGYNRKEVEGKNPLLLLQGPETDHETLDRIWADCKNKK 450 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E L +T N +Y + ++ +++ + + D+ Sbjct: 451 VVREEVL-----CYTKNGEKYWVDLKITPVFDDYGNCSNFIAVERNITARKESDQEMKRI 505 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG-LSTLLDAPKLSDNNAI 381 + + + V G YA + L + + E+ + + A A Sbjct: 506 KDILQQTNSVAVV--GGWELYA-RTGELYWSSTTREIHEVDPDYVPSTETAIGFYKEGAS 562 Query: 382 KPVMLYRSDRTC---IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + ++ L + T E + + G + Sbjct: 563 REAIARAVEKGLSYGTPWDNELQIVTAKGNERWVRTIGKAEMVDGVC--VRIYGAFQDIT 620 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--- 495 + + ++ + S+ ++TSD + + + G L N A K+FG D+L K Sbjct: 621 HRKQAEVEILNSEAKFRSLYDSTSDAVILFDHTG-YLDCNDAALKMFGIDSVDMLMKMPM 679 Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPF 550 + E + N + + T KE + + + + K+ Sbjct: 680 GDLSGLNEPGMEAARNDGCRHVREVYENGTHNFEWKYKRFGESKESFIAEVLLNLMKVNG 739 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+ K+ + +L A++ AE S KS+FLA +SHEIRTPL ++GF++++ Sbjct: 740 KEIIQAVIRDITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLL 799 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + +Y + + +S N ++DI+ND+LD SKIE+GK+ L E L E Sbjct: 800 MKTNL----DETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGR 855 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +V A +K + + + +IPR + D ++QI +N+LSNA+ FT G +I + Sbjct: 856 VADMVTYQAQQKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIKG-EIELKI 914 Query: 730 THTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + VRDTG+G+ + + F Q +S R GTGLGL ++ ++ Sbjct: 915 ELLNKVSGLDYTFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSL 974 Query: 785 VDANMGKFYIFSTPAKGTLIEI 806 + + + S KG+ Sbjct: 975 LGLMESRLQLTSELEKGSTFFF 996 Score = 89.3 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 68/237 (28%), Gaps = 13/237 (5%) Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + GN Y N F + + I + + + T Sbjct: 156 IDLEGNYKYVNDHFCEFFRLDRSEIIGRSSISGV--VPEDIPKCLEVGEQCFIN-PGTPN 212 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R ++ E + A++ + + + L Sbjct: 213 PVVLRKYS---AGEGVKTTQWEFTGIADENGVVTEIFCLGYDITQQLKVQ-------EDL 262 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ D + I+ +G+ + + + ++G+ VE+ + + FT F+ + L Sbjct: 263 SVLVSNMQDVLFTISPDGVFTYVSPSWTSMYGHTVEETVGRSFTEFIHPEDFHICFEALR 322 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + ++ P S LT HDI+E + + +L Sbjct: 323 ITAETGVPVPGGVEHRIRHRDGSWSWSNTSANIDPVSKNIILTSHDITELRNSRERL 379 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 55/502 (10%), Positives = 136/502 (27%), Gaps = 39/502 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKT 147 ID G K +++ + ++IG I +G+ T Sbjct: 156 IDLEGNYKYVNDHFCEFFRLDRSEIIGRSSISGVVPEDIPKCLEVGEQCFINPGTPNPVV 215 Query: 148 TLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + + + N + F + + + + L S+ Sbjct: 216 LRKYSAGEGVKTTQWEFTGIA--DENGVVT--EIFCLGYDIT---QQLKVQEDLSVLVSN 268 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ S Y S S H + S TE+ +D + E + Sbjct: 269 MQDVLFTISPDGVFTYVSPSWTSMYGHTVEETVGRSFTEFIHPEDFHICFEALRITAETG 328 Query: 267 SSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 +P + + + T N S + + + E Sbjct: 329 VPVPGGVEHRIRHRDGSWSWSN----TSANIDPVSKNIILTSHDITELRNSRERLKELAI 384 Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + G + + N ++ T Y + G LL +D+ + Sbjct: 385 VASNTTDYIVITDHKGFITWVNKAYETHTGYNRKEV---EGKNPLLLLQGPETDHETLDR 441 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + ++ + +T + + + +E + + Sbjct: 442 IWADCKNKKVVREEVLCYT---KNGEKYWVDLKITPVFDDYGNCSNFIAVERNITARKES 498 Query: 444 KRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++M+ L + S + + R G L + ++ + + + Sbjct: 499 DQEMKRIKDILQ---QTNSVAVVGGWELYARTGE-LYWSSTTREIHEVDPDYVPSTETAI 554 Query: 500 FLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + + + + + LS E + + E+ + I K + Sbjct: 555 GFYKEGASREAIARAVEKGLSYGTPWDNELQIVTAKGNERWVR---TIGKAEMVDGVCVR 611 Query: 558 ----MHDISEWKQEKNKLSHAK 575 DI+ KQ + ++ +++ Sbjct: 612 IYGAFQDITHRKQAEVEILNSE 633 >gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 955 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 126/742 (16%), Positives = 266/742 (35%), Gaps = 49/742 (6%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156 L + G ++ + +V + + L+ + + Sbjct: 91 YWGSHLSQVYGLPTD-ILKKSIQEVISVSVGEQITEAFARLQVGQSLVNLEYSLVVNEQE 149 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 + I L L + F G I+ + + + + E Sbjct: 150 EFYEIRLVNL------SQPEHFLG--IIRNISNCKRVELQLRHNEHLYRAIGETIDYGIW 201 Query: 217 VEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEESSLPEQ 272 V + L + + H DD +T + + S + Sbjct: 202 VCQPDGRNIYASESFLNLVGLTQEECSNFGWGNVLHPDDAQETISAWKECSRIGSFWDRE 261 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ + +++ + + + L E E D Sbjct: 262 HRYRGVDGQWHPILARGVPVRDANGDIICWAGINLDISRLKQTEEKLRESEERFRILADS 321 Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P+ ++ G + N ++L + +++ L ++A + Sbjct: 322 APVLIWMNGFEGGCEFVNKAYLDFFGKT-LSEVQGLAWSDYL------HPDDASYIQVYL 374 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 ++ + A+ + + + + + E + G + + + + + Sbjct: 375 KTFKERQPFRAQGRFKRADG-QYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEAL 433 Query: 448 EIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + ++ D I + G + N K GY E++L+ + Sbjct: 434 LQREQRFSTLFNGMEDWILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQMSVRDIVN 493 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHD 560 + ++ + + L ++ TK+ + + + + L D Sbjct: 494 TLFINAEINFKKLLSAKH----LVLESVHRTKDGENIPVEVSATLFTLNGLPTVQAICRD 549 Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 I+E KQ + + + A+++AE + K +FLA +SHE+R+PL I+G+++++ Sbjct: 550 ITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILGWAKLLNTH 609 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + + + I+R+ L +++ DLLD+S+I GK+ L V+L + AI Sbjct: 610 TLEPATH---QKALSIIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLGFIIDSAIE 666 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++L A K I I+T NI +L D ++QI N+LSNA+ FTP+GG++ I ++ Sbjct: 667 TIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFTPTGGKVEIEL-NSL 725 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +RV DTG G+T+ L F Q ++ G GLGL +A+ +V+ + G Sbjct: 726 GNWAKIRVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAIARHLVELHGGTIK 785 Query: 794 IFS-TPAKGTLIEIIFPLYDTS 814 S +G + PL + Sbjct: 786 AESLGEGQGATFIVKLPLIPET 807 Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats. Identities = 48/397 (12%), Positives = 99/397 (24%), Gaps = 28/397 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WY 144 W G SE +G + +V R + W Sbjct: 200 IWVCQPDGRNIYASESFLNLVGLTQEECSNFGWGNVLHPDDAQETISAWKECSRIGSFWD 259 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + ++G + PI +P+ N + + G + + +++F Sbjct: 260 REHRYRGVDG--QWHPILARGVPVRDANGDIICWAGINL--DISRLKQTEEKLRESEERF 315 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + + + + Y H DD + Y Sbjct: 316 RILADSAPVLIWMNGFEGGCEFVNKAYLDFFGKTLSEVQGLAWSDYLHPDDASYIQVYLK 375 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE---- 317 E Q F + + +++ E Y+ + S +E Sbjct: 376 TFKERQPFRAQGRFKRADGQYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEALLQ 435 Query: 318 GENLTPETVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDIE--IAGGLSTL 369 E + VY GN N Y + ++ + ++TL Sbjct: 436 REQRFSTLFNGMEDWILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQMSVRDIVNTL 495 Query: 370 LDAPK------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + LS + + + D I N ++ + Q Sbjct: 496 FINAEINFKKLLSAKHLVLESVHRTKDGENIPVEVSATLFTLNGLPTVQAICRDITERKQ 555 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 E +N + E + + I + ++L Sbjct: 556 I-EQERENLLIQEQAAREVAESANRI-KDEFLAVLSH 590 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 5/139 (3%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE F V W G + +++ G ++ G+ D Sbjct: 310 ESEERFRILADSAPV-LIWMNGFEGGCEFVNKAYLDFFGKTLSEVQGLAWSDYLHPDDAS 368 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 K + + + +G Y ++ A P +S EF G+ G Sbjct: 369 YIQVYLKTFKERQPFRAQGRFKRADG--QYRWLESRANPRFSSTGEFLGY--IGTSSDIS 424 Query: 189 VDNDPRALGKRLDKKFSHL 207 + + +++FS L Sbjct: 425 EIKEAEEALLQREQRFSTL 443 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 36/321 (11%), Positives = 91/321 (28%), Gaps = 22/321 (6%) Query: 28 KKIDNGFETEKSKKENPCHDSFEQSNF--TDQNQESVSNTNYLDSENTFVFDP---IPRT 82 K+ D + +S+ + E + T + + + F Sbjct: 390 KRADGQYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEALLQREQRFSTLFNGMED 449 Query: 83 VRFTWNIDAHG---YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 + + G E++E+ K +G +++ M + D+ + L I+ + LL Sbjct: 450 WILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQMSVRDIVNTLFINAEINFKKLLSA 509 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGK 198 ++ +G N +P++++A +G I + Sbjct: 510 -KHLVLESVHRTKDGEN--IPVEVSATL-----FTLNGLPTVQAICRDITERKQIEQERE 561 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDDV 253 L + E+ + + ++ E + S + P + +L K Sbjct: 562 NLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILGWAKLLNTHTLEPATHQKALS 621 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + L L + L G + +++ E+ + + + Sbjct: 622 IIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLGFIIDSAIETIRLAAQAKNIQIQT 681 Query: 314 YFDEGENLTPETVDKCPIPFF 334 D + + Sbjct: 682 KLDPNIGEVLGDPARLQQIVW 702 >gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1] Length = 702 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 118/529 (22%), Positives = 222/529 (41%), Gaps = 31/529 (5%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLL 350 +++ E E + V+ + G + N + Sbjct: 175 IRDKELFFINVYDITASKKAERELIESEEKFKQVVELSVDGIIIGTDSGKIVDCNGAACR 234 Query: 351 LTKYKSVDDI---------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + Y + + ++ + + + + + D T A Sbjct: 235 IFGYDKEEILKLQVIDLFPGDLNIIAHDITSCNKAAGEKTVERINQKKDGTSFPAEVAAR 294 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ E L + + + + ++ ++ +++ T Sbjct: 295 RVKLGNEEGLIVYVR-------------------DITERKKAEKALKESEENFRTLVNNT 335 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 DGI I++ EG +L+ N A+ K+ G +E + +L + V +L+ Sbjct: 336 LDGILILDFEGRVLAANAAIGKMLGMELEKVAGIDIMKYLAPESVPVAVEDQINVLNGRG 395 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + E + + + DI+ K+ + L +AK AE Sbjct: 396 GYLSVYKSTSCNGEPLWIEGLGTKIIYRGQPANIVVIRDITARKKAEEALINAKTAAEAA 455 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FL +SHE++TPL +IIGFS+++ GPL N + YA +I +G +L+I+ Sbjct: 456 NRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPL-NEKQSRYAGFISSNGKNLLNII 514 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N +L++SK+ES L + S++E+++++IS +K I + + ++ I AD Sbjct: 515 NGILELSKVESEGDELTLQEFSVNESINKSISTALPQILKKNIKLNYNSDSDPLCIFADE 574 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +QI ++L+NA+ FTP G I IS + V ++V+DTG+G+ L+K KPF Sbjct: 575 NKFRQIMESLLNNAVKFTPEDGLIDIS-SKQEGGIVTIKVKDTGIGIPEDSLDKIFKPFI 633 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ +S EGTGLGL LAK V+ + G + S KG+ ++ P+ Sbjct: 634 QLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKGSSFKVELPV 682 Score = 77.8 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 34/369 (9%), Positives = 90/369 (24%), Gaps = 29/369 (7%) Query: 89 IDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYG 145 +D + + ++ G +M ++ D++ + + N I L+++ +Y Sbjct: 96 VDPESYRIVDANDPACAYYGYTYEEMTAKKISDIN-VFSEEKNKEITRQVFLEKRGHFY- 153 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G +V + + + I + F V+ ++KF Sbjct: 154 -SCHKLASGEIRHVEVYINTVNIRDKE------LFFINVYDITASKKAERELIESEEKFK 206 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E+ + + I + + D + Sbjct: 207 QVVELSVDGIIIGTDSGKIVDCNGAACRIFGYDKEEILKLQVIDLFPGDLNIIAHDITSC 266 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + + + L N E E Sbjct: 267 NKAAGEKTVERINQKKDGTSFPAEVAARRVKLGNEEGLIVYVRDITERKKAEKALKESEE 326 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDN 378 V+ + G + AN + + ++E G+ + AP+ Sbjct: 327 NFRTLVNNTLDGILILDFEGRVLAANAAIGKMLGM----ELEKVAGIDIMKYLAPESVPV 382 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + ++ + N E P N + + Sbjct: 383 AVEDQINVLNGRGGYLSV---YKSTSCNGEPLWIEGLGTKIIYRGQPAN---IVVIRDIT 436 Query: 439 DTRINKRKM 447 + + + Sbjct: 437 ARKKAEEAL 445 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV 499 + N ++ + + +++ E I+ N +GY E++ K + Sbjct: 69 KKNYEALQESESRYRQFFNNSPAVTLLVDPESYRIVDANDPACAYYGYTYEEMTAKKISD 128 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + L + E + + + I + + + ++ Sbjct: 129 INVFSEEKNKEITRQVFLEKRGHFYSCHKLA--SGEIRHVEVYINTVNIRDKELFFINVY 186 Query: 560 DISEWKQEKNKLSHAKKIAEK 580 DI+ K+ + +L +++ ++ Sbjct: 187 DITASKKAERELIESEEKFKQ 207 >gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1566 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 137/831 (16%), Positives = 266/831 (32%), Gaps = 54/831 (6%) Query: 26 SKKKIDNGFETEKSKKE--NPCHDSFEQSNFT----DQNQESVSNTNYLDSENTFVFDPI 79 + +KI FE+ H Q+ D Q SE F Sbjct: 602 ASQKISVHFESPSLYARLWREVHIYPHQNGLAVYWRDITQRKQIEAALSQSETQFRQLAD 661 Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLL 137 + W +A G ++ ++++ + ++ + Sbjct: 662 AMP-QIVWITNAAGKVEYLNQQWFDYTALPQNENSYNPEQIRSAIHPDDLSTIVESWKTA 720 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 T Y Y A+ I E +G Sbjct: 721 FTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQGEII--AWYGTSTDIDDYKQAELCI 778 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTEY 246 ++ + + L S + ++ + + Sbjct: 779 RKKESLLNALIASSPIGISFFDQDLCYLYVNQALATINGVPLNEHLGRSLEEVLPLMAAE 838 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + + PLL E +F N + G + + + Sbjct: 839 FRPLLTQILQTQQPLLNHEFMGEIIPGNFRHCLANHFPVCLPDGEVLGIGVTVMDITQLK 898 Query: 307 NHPSLSAYFD----EGENLTPETVDKCPIPFFV-YSHG-NLFYANPSFLLLTKYKSVDDI 360 + + E ++ P+ ++ + + AN + L + K D Sbjct: 899 QVEAALRASEATATERAQELETLMEITPVGLWIAHDPDCHSMSANQTAYQLMQAKPGDIA 958 Query: 361 EI--AGGLSTLLDAPKLSDNNA---IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 G L + + P+ + I + + Sbjct: 959 TATPPDGTYPLNFKQRRNGKEITPDDLPMQVAARSGQEITDEIEFV---FEDGTVRFIYG 1015 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 N+ + G + + + + + + + EA + I N +G Sbjct: 1016 RAIPLTNESGQIRGVIGAFVDITERKQAEEALRQSEQRYRYLAEAIPQLVWITNSQGYNE 1075 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+ + + G E +L+ + + + D E + Sbjct: 1076 YVNQQMCEYTGLTFEQLLQFDWREIIHPEDIEQTYQKWMAAVEQD--GYYEMEYRLRNAQ 1133 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSH 584 K L + T +I KQ + + A++ AE+ + Sbjct: 1134 GKYQWYLGRAIPLKNEQGKIVKWFGTSTNIDAQKQLEAQRESLLSLERAAREQAEEANRI 1193 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K +FLA +SHE+R+PL I+G++++++ Q F Y + + I+R+ L ++ DL Sbjct: 1194 KDEFLAVLSHELRSPLNPILGWAKLLQTQNFNA---ETYQKGLSTIERNAALQAQLIEDL 1250 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LDIS+I GK+NL PV+L + A+ V+L A K I I+ + ++L D + Sbjct: 1251 LDISRIMRGKLNLKIVPVNLIFIIESALETVRLAAEAKTINIQKDLDLTVGKVLGDTARL 1310 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI N+LSNA+ FTP+GGQ+ + + E ++ V DTG G++ L F Q Sbjct: 1311 QQIVWNLLSNAVKFTPTGGQVNVKLEGS-GNEAVITVSDTGQGISANFLPYVFDYFRQAD 1369 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 + + G GLGL + + +V+ + G S +G + PL + Sbjct: 1370 SKTTRKFGGLGLGLAIVRHLVELHGGTVTANSPGENQGATFSVKLPLINQD 1420 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 52/535 (9%), Positives = 133/535 (24%), Gaps = 52/535 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 +++D +++E + + +G + +V L N+ L R+ Sbjct: 551 FSLDHQWRFTYVNQETERLCQKTREEFLGHSIWEVYPEL---INSEFDQQL-RRAASQKI 606 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFS 205 + + + ++ P + G + A + + +F Sbjct: 607 SVHFESPSLYARLWREVHIYPHQN---------GLAVYWRDITQRKQIEAALSQSETQFR 657 Query: 206 HLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTEK 258 L + + + Q + + +S + Sbjct: 658 QLADAMPQIVWITNAAGKVEYLNQQWFDYTALPQNENSYNPEQIRSAIHPDDLSTIVESW 717 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAY 314 T++ E + + ++ E + Sbjct: 718 KTAFTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQGEIIAWYGTSTDIDDYKQAELC 777 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E+L + PI + Y N + + + + + Sbjct: 778 IRKKESLLNALIASSPIGISFFDQDLCYLYVNQALATINGVPLNEHLGRS-------LEE 830 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 L A +L + +T + N F E + Sbjct: 831 VLPLMAAEFRPLLTQILQTQQPLLNHEFMGEIIPGNFRHCLANHFPVCLPDGEVLGIGVT 890 Query: 434 EPEDVDTRINKRKMEIEV-------MQLCSILEATSDGIAI-INREGIILSTNRAVSKLF 485 + + + + +L +++E T G+ I + + +S N+ +L Sbjct: 891 VMDITQLKQVEAALRASEATATERAQELETLMEITPVGLWIAHDPDCHSMSANQTAYQLM 950 Query: 486 GYPVEDIL-------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 DI P +N + L ++ Q + ++ + Sbjct: 951 QAKPGDIATATPPDGTYPLNFKQRRNGKEITPDDLPMQVAARSGQEITDEIEFVFEDGTV 1010 Query: 539 LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + L DI+E KQ + L +++ + + Sbjct: 1011 RFIYGRAIPLTNESGQIRGVIGAFVDITERKQAEEALRQSEQRYRYLAEAIPQLV 1065 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 50/468 (10%), Positives = 119/468 (25%), Gaps = 42/468 (8%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + D R KRL + + G + +E ++ + + L E Sbjct: 401 ADDNADMRDYIKRLLTDLYEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFELLREL 460 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYL 303 A+ + + E S E + + + Sbjct: 461 RANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKMAQIREE 520 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 + L +E ++ FF H Y N L + + + Sbjct: 521 NAHREQQLRIEAEEARKEVINILETITDGFFSLDHQWRFTYVNQETERLCQKTREEFLGH 580 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + P+L ++ + + S + + S ++ + + + Sbjct: 581 SIWE----VYPELINSEFDQQLRRAASQKISVHFE------------SPSLYARLWREVH 624 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 +P + + + + Q + +A + I N G + N+ Sbjct: 625 IYPHQNGLAVYWRDITQRKQIEAALSQSETQFRQLADAMPQIVWITNAAGKVEYLNQQWF 684 Query: 483 KLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 P + P + + S + + E ++ Sbjct: 685 DYTALPQNENSYNPEQIRSAIHPDDLSTIVESWKTAFTNQTPYQSEFRLR-RGRDGSYRW 743 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS--- 593 + + T DI ++KQ + +K ++ + +S Sbjct: 744 FLGRAVVIKGPQGEIIAWYGTSTDIDDYKQAE---LCIRKKESLLNALIASSPIGISFFD 800 Query: 594 HEI-----RTPLTAIIG--FSEVIKN--QRFGPLGNPRYIEYANYIDR 632 ++ L I G +E + + PL + I + Sbjct: 801 QDLCYLYVNQALATINGVPLNEHLGRSLEEVLPLMAAEFRPLLTQILQ 848 Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 47/399 (11%), Positives = 102/399 (25%), Gaps = 21/399 (5%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 P A L S E+ + S + +S T D Sbjct: 288 PLAQLGWLIVGISPRRELDDHYRGFFDLVSHHLSYALANAEAYETDMISLPTGLAHLPKD 347 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + + +E + + + R L+ Sbjct: 348 KVSHQGGLTFNKNNGNCFGEEALGGLP------EDKPTETVPDRAAIATVFGSRPRILLA 401 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + V + A L V + G L + Sbjct: 402 DDNADMRDYIKRLLTDLYEVETVSDGIAVLEALARELPDLVLTDV-MMPGLDGFELLREL 460 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + I ++L + + + E + Sbjct: 461 RANPNTRQIPIILLSARAGEPSRVEG-----LKAGADDYLIKPFSARELLARVETHLKMA 515 Query: 433 IEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 E+ R + ++E E + +ILE +DG ++ + N+ +L E Sbjct: 516 QIREENAHREQQLRIEAEEARKEVINILETITDGFFSLDHQWRFTYVNQETERLCQKTRE 575 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + L + S + L S + E +L + L + I Sbjct: 576 EFLGHSIWEVYPELINSEFDQQLRRAASQKISVHFESPSLYAR-----LWREVHIYP--H 628 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + ++ DI++ KQ + LS ++ + + + Sbjct: 629 QNGLAVYWRDITQRKQIEAALSQSETQFRQLADAMPQIV 667 Score = 64.3 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 42/434 (9%), Positives = 120/434 (27%), Gaps = 28/434 (6%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 F D + + SE + + + W ++ GY + +++++ + G + Sbjct: 1033 AFVDITERKQAEEALRQSEQRYRYLAEAIP-QLVWITNSQGYNEYVNQQMCEYTGLTFEQ 1091 Query: 113 MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 ++ ++ I+ +++ + + L +G A+P+ + Sbjct: 1092 LLQFDWREIIHPEDIEQTYQKWMAAVEQDGYYEMEYRLRNAQGKYQ--WYLGRAIPLKNE 1149 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + + FG A + L E + + ++ E + S + Sbjct: 1150 QGKIV--KWFGTSTNIDAQKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSHELRS 1207 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK------ 285 P + + L + + + + + ED I+ K Sbjct: 1208 PLNPIL-GWAKLLQTQNFNAETYQKGLSTIERNAALQAQLIEDLLDISRIMRGKLNLKIV 1266 Query: 286 --------KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + T++ ++ + ++ + L + Sbjct: 1267 PVNLIFIIESALETVRLAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNAVKFTP 1326 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G N + + G+S + + + Sbjct: 1327 TGG--QVNVKLEGSGNEAVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGLGLA 1384 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 H ++ + A + NQ + + +D + + + Q SI Sbjct: 1385 IVRHLVELHGGTVTANS----PGENQGATFSVKLPLINQDTIPKTDSTDITESHQQ-RSI 1439 Query: 458 LEATSDGIAIINRE 471 L+ + I +++ + Sbjct: 1440 LQLSGMDILVVDDD 1453 >gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1006 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 113/744 (15%), Positives = 254/744 (34%), Gaps = 56/744 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W ID+ +++++ +G ++ L D + + Sbjct: 289 VWIIDSDSMTTFVNQQMANMLGYTQEEITQSSLFKFVDEQDYPIVENYLQRRREGIAEQH 348 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKF 204 + G + L+ PI+ ++ + G I+ +K+F Sbjct: 349 EFQFKRKNGDI--LWTILSTNPIFDDSK----YAGCCAIITDINYRKKAELAIAVSEKRF 402 Query: 205 SHLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + V Y+ ++ + + + + Sbjct: 403 QEIASTISQFFFVKCANSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDRGAVIN 462 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310 EK + + + + + + + N+ Y+ + Sbjct: 463 YQEKQH----QNNLVKREYRIIRNDGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQ 518 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E E L V+ P F +Y L + N L T + I L Sbjct: 519 AELALAESEELLRLAVNHAPDIFVIYDSDRRLKFVNQRVLERTGWSEETFIGRRD--EEL 576 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + L + TI + + ++ Sbjct: 577 FL-----PEETCHYLPLLEKTIQTLTIQIGEATITLPNQTPKTVIIKYLPLLDKQGRLSQ 631 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 G+ + + ++K+ + + E + G+A+++ +G L NR++ ++ GY Sbjct: 632 ILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLGYQE 691 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++L+ + +++ + K+ ++ + + + + Sbjct: 692 AELLQLKCKDITHPEDYEQEVKSIKKLIE-GQVKYYYVEKRYLHKQGYVIWVLLSMSIVR 750 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + +ISE + + K++F++ VSHE+RTPLTAI G Sbjct: 751 NIDGVPLYFIAQAQNISERRAVE--------------QMKNEFISVVSHELRTPLTAIQG 796 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++ + + + ++ ++ +VND+LDI ++ SG++ E S Sbjct: 797 SLGLLSSGLYDHKPQE-FHKFIEIALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQ 855 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E + + I+ +Q A+ I + ++ A ++ Q N++ NAI F+P + Sbjct: 856 ELMMQVINSLQAIAHRDSITL--EILPTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTV 913 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S + ++ V+ +VRD G G+ +L+ F Q+ S + GTGLGL + ++++ Sbjct: 914 TLS-AYPQDDMVLFQVRDQGRGIPPEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSII 972 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + + GK ++ S AKG+ P Sbjct: 973 EQHGGKIWVESQLAKGSTFYFTIP 996 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 67/569 (11%), Positives = 158/569 (27%), Gaps = 35/569 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 W D + + S++ + G +++G + + + D N + Sbjct: 162 IW--DRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDRVNRETQTIFANQEK 219 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + Y + + + + V A + + K Sbjct: 220 RRICINRNYRKDGSVIYCEWYNSNFYDESGKLNMLLSW--VQDISDRQKTEAALIKSEAK 277 Query: 204 FSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E +G ++ + F Q L + + + + D+ L Sbjct: 278 LRTIIETTLEGVWIIDSDSMTTFVNQQMANMLGYTQEEITQSSLFKFVDEQDYPIVENYL 337 Query: 263 TSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDE 317 + EQ +F N + + ++SK + Sbjct: 338 QRRREGIAEQHEFQFKRKNGDILWTILSTNPIFDDSKYAGCCAIITDINYRKKAELAIAV 397 Query: 318 GENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPK 374 E E FFV + G Y +P++ + + L+T+ + Sbjct: 398 SEKRFQEIASTISQFFFVKCANSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDR 457 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 V+ Y+ + R + I N + N + G Sbjct: 458 -------GAVINYQEKQHQNNLVKREYRIIRNDGVIRWVYEEVNIIYNDDGSPLRYVGFA 510 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D + + + L + D I + + + N+ V + G+ E + Sbjct: 511 EDISDRKQAELALAESEELLRLAVNHAPDIFVIYDSDRRLKFVNQRVLERTGWSEETFIG 570 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 + L + + Q E + ++ I L Sbjct: 571 RRDEELFLPEETCHYLPLLEKTIQTLTIQIGEATITL--PNQTPKTVIIKYLPLLDKQGR 628 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE-----IRTPLTAIIG 605 DI+ +KQ + KL +++ + +A +S + + L ++G Sbjct: 629 LSQILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLG 688 Query: 606 F--SEVIKNQRFGPLGNPRYIEYANYIDR 632 + +E+++ + Y + I + Sbjct: 689 YQEAELLQLKCKDITHPEDYEQEVKSIKK 717 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 42/380 (11%), Positives = 117/380 (30%), Gaps = 13/380 (3%) Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + + P + K + AH +L E + + + + Sbjct: 43 VAKHIPPDLIFLDVKLPDTDGYLIAKQLQVHTVTAHVRILLLAESKSVFRAIRAFNLQVA 102 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 D L+ + + + N S + + +D P+ Sbjct: 103 DVLIYPLDFEEVQWRIE--MQLLSSPYRRDNLTNQLSTTHSLKSVNHQLKILIDNSPLGT 160 Query: 334 FVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 ++ + + + + + + + L+ N + ++ Sbjct: 161 IIWDRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDRVNRETQTIFANQEKR 220 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 I + + + + ++ + + D + + + Sbjct: 221 RICIN---RNYRKDGSVIYCEWYNSNF-YDESGKLNMLLSWVQDISDRQKTEAALIKSEA 276 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L +I+E T +G+ II+ + + N+ ++ + GY E+I + F+++ ++ +Y Sbjct: 277 KLRTIIETTLEGVWIIDSDSMTTFVNQQMANMLGYTQEEITQSSLFKFVDEQDYPIVENY 336 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN 569 L Q K +L + + S + DI+ K+ + Sbjct: 337 LQRRREGIAEQ---HEFQFKRKNGDILWTILSTNPIFDDSKYAGCCAIITDINYRKKAEL 393 Query: 570 KLSHAKKIAEKESSHKSDFL 589 ++ ++K ++ +S S F Sbjct: 394 AIAVSEKRFQEIASTISQFF 413 >gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21] Length = 916 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 113/640 (17%), Positives = 233/640 (36%), Gaps = 30/640 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + R+ ++ + + +S + + + P + L Sbjct: 43 RQSDDAVRRSEEQLRISQRIARIGSWDLDLASGRLDCSEELCRIFSVPLDEAPDNYDGLL 102 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + S + + + +++S + +S Sbjct: 103 AILPEYGKDALAAAVEEALAGRDSFAVEYSVERPGGKESFLFEVGEVFRDDSGAALRVVS 162 Query: 305 HRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDI 360 S + E ++ P F+ ++ N SF + D Sbjct: 163 VVQDVSEQKEAENALFFEQRYRGLIENLPQRIFLKDCNSVYLSCNSSFARDLGVEPTDVF 222 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L AP+L+ D +AA A + + + + ++ Sbjct: 223 GK---TDYDLFAPELARKRQDD-------DEKVMAAGAAVERDEQRQRDGAWISKALIPL 272 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + G+ + + + +++ + +I E + GI + G ++ NR Sbjct: 273 KDDNGRVYGLLGVLTDITFRKRAEEQLKESEERFRNIFEQAALGICHLALSGALIRINRR 332 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + G+ E++L + + + +LS ++ + + Sbjct: 333 FCDILGFEQEELLGWSLVQTIHPDDRAAEQRQAARLLSREIDS-YSIEIRQMRHDGTPVW 391 Query: 541 LRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + + D++ +E +L + + + S KS FLA + HEI Sbjct: 392 VNLTKSLVCGPKGEPKYLTGVIEDVTA-NREAEELRRERDLVQAASRAKSQFLANMGHEI 450 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL A++G S + + + Y I S +L+I+ND+LD SK+E+GK+ Sbjct: 451 RTPLNAVMGLSRLALKTEL----DSKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLE 506 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L ++L E + + A EK I R A ++P+ ++ D + Q+ N+++NA Sbjct: 507 LEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPKKLVGDPLRLTQVLNNLIANA 566 Query: 716 IHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + FT G +++++ E V V+DTG+G+ ++ K PF Q +S R Sbjct: 567 VKFTEKG-EVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRY 625 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL +++ +V+ G+ + S P G+ PL Sbjct: 626 GGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVPLA 665 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 11/232 (4%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 FE + +++ S D +++ + N L E + R + D + Sbjct: 144 FEVGEVFRDDSGAALRVVSVVQDVSEQKEAE-NALFFEQRYRGLIENLPQR-IFLKDCNS 201 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + + +G + G D+ + + + + Sbjct: 202 VYLSCNSSFARDLGVEPTDVFGKTDYDLFAPELARKRQDDDEKVMAAGAAVERDEQRQRD 261 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK- 212 G I A +P+ N G G ++ K +++F ++ E Sbjct: 262 G----AWISKALIPLKDDNGRVYGLLG--VLTDITFRKRAEEQLKESEERFRNIFEQAAL 315 Query: 213 --GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 H ++ I + + + H DD ++ Sbjct: 316 GICHLALSGALIRINRRFCDILGFEQEELLGWSLVQTIHPDDRAAEQRQAAR 367 Score = 46.6 bits (109), Expect = 0.017, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 2/74 (2%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLW 150 G L I+ +G +++G L L + +++ + Sbjct: 324 GALIRINRRFCDILGFEQEELLGWSLVQTIHPDDRAAEQRQAARLLSREIDSYSIEIRQM 383 Query: 151 PIEGTNLYVPIDLA 164 +GT ++V + + Sbjct: 384 RHDGTPVWVNLTKS 397 >gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327] Length = 922 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 110/747 (14%), Positives = 249/747 (33%), Gaps = 57/747 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 DA+ + +++ + +G A ++IG ++ ++LK + Sbjct: 57 DANFRYRSVNQAFCRFLGMRADEIIGKNDEELLSPEDAVLCAGQDAEVLKTRQHLEKDRV 116 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 I G V + P++ + + + I+ + R + + D+ F+ Sbjct: 117 ---IAGPKGRVWFRVKKTPVFDASGQVT-----AILCMARDISRRKKAELEFDRLFNLTP 168 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ SS + Q + + + + D + + + + S Sbjct: 169 DMVCIASSNGHFTKINKAWQKTLGYSEQELLSTPFLKLIHPDDIKVTWAEIEKILDGQRS 228 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + + + + L+ + + ++ L + Sbjct: 229 LNFVNRYRASDGSYRWFEWNSTPLEE-----GVIYAVTRDITERIEQEKQTRLWADAFRL 283 Query: 329 CPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 C + + N +F L + V +IE +++L + VM Sbjct: 284 CAHGIAIGLPQTNQVLACNEAFARLCG-RPVSEIEGV-RIASLYVPED------RETVMN 335 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + +Q ++ + M + + ++ Sbjct: 336 NIRTVDRTGFISYQARMQRPDGSAFPAQMDVVSVRGDDGQLMYRVATVQDITGRLKSQSA 395 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505 + + S++E+ D I I E N LFG +++L + + + Sbjct: 396 LRESEERFRSVVESAPDAIFIQTSE-CFSYLNNRALTLFGASTPDELLGRKVLDMIHPDC 454 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISE 563 +++ + + L + L + + + + + DI Sbjct: 455 RELVDTRMRRLNELRQSAPAIEERLLRL-DGSTVEVEASAVPFTFSGKPGALVFLRDIRR 513 Query: 564 WKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 K+ + + + ++ + ++H++ LT I+G+SE++ + P Sbjct: 514 RKKAEKERAELEQQLYQSQKIESIGRLAGGIAHDLNNLLTPILGYSEMLLKRIREP---E 570 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +Y I + ++V LL S + +L F V L+E + + L++ Sbjct: 571 KSKQYVEVIHHAALKSRELVRQLLAFS----SRQSLEFRTVDLNEVIRDFEQLLRRTI-R 625 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------- 731 I IR + D ++QI +N+ NA P+GG++I+ ++ Sbjct: 626 ADIDIRYHLHEQPLPMRGDASQLEQIIMNLAVNAEDAMPAGGELIMESSLLVIKKGEEKY 685 Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + +L VRDTG GM L +PF +G+GTGLGL +V Sbjct: 686 FEGLAAGSYALLTVRDTGEGMDQKTLSHLFEPFYTTKP----KGKGTGLGLSTVYGIVRQ 741 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + G + S +GT +I+ P+ + Sbjct: 742 HGGIIQVGSERGEGTCFKILLPIQHSD 768 Score = 93.9 bits (232), Expect = 9e-17, Method: Composition-based stats. Identities = 32/294 (10%), Positives = 80/294 (27%), Gaps = 28/294 (9%) Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342 +++Q +L+ +E+ + + + ++ P + Sbjct: 9 SREQELLSLRRELEEAKQLNEKLQDELVE-----QRSFMDALLEATPDLLVLKDANFRYR 63 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 N +F ++ + I LL +L L Sbjct: 64 SVNQAFCRFLGMRADEIIGKND--EELLSPEDAVLCAGQDAEVLKTRQ--------HLEK 113 Query: 403 IQWNRENSLAMTFIP--FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + F + + + + + + + + Sbjct: 114 DRVIAGPKGRVWFRVKKTPVFDASGQVTAILCMARDISRRKKAELE-------FDRLFNL 166 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 T D + I + G N+A K GY +++L PF + + V + +IL Sbjct: 167 TPDMVCIASSNGHFTKINKAWQKTLGYSEQELLSTPFLKLIHPDDIKVTWAEIEKILDG- 225 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 +++L + + L DI+E +++ + Sbjct: 226 -QRSLNFVNRYRASDGSYRWFEWNSTPLE-EGVIYAVTRDITERIEQEKQTRLW 277 >gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 3309 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 123/779 (15%), Positives = 253/779 (32%), Gaps = 64/779 (8%) Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 F W I+ G L ++ T+G ++ M + D+ + + ++ + Sbjct: 2316 FASENTATSIFW-INRTGSLINVNRSACATLGYPPDELKQMFIWDIDPLFPAEVWSNYWE 2374 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 L ++ +G+ V I L E G+ F V Sbjct: 2375 QLSLNGYERFESLFQAKDGSTFPVEIMGNYL-----EYEGEGYI-FAEVQDISDRKAAE- 2427 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 K L + ++ + +S + L + + K Sbjct: 2428 --KVLQFTQYSVDNAADCIFWIKPDGGFAYSNHAASRMHGYSIDDLMLMSVFDVNPTISK 2485 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHRNHPSL 311 P + + + N + + + Sbjct: 2486 AFWSPHWQTIKEQGSVSLESQHQNRDGQLFPVEIVANYLEFEGEEYNFVRVRDISARKAA 2545 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 +N ++ P ++ N F + GL+ Sbjct: 2546 EQELILKQNHLEALLNNIPQMAWLKDADSQFIAVNEPFAQACGLS----VGEIIGLTDCD 2601 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P+ + + + + ++ Sbjct: 2602 IWPQDMAQSYREDDFKVMASGHRKRVE---EPFSQADGTLGWLETTKTPFQDEQGRMAGT 2658 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PV 489 GI + + + ++++ L +L+ + +R + L N+A +++ G+ Sbjct: 2659 VGIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKDRNSVYLGCNQAFTEMAGFTSS 2718 Query: 490 EDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++I+ + + I+S + + T + K L L Sbjct: 2719 DEIVGQTDYELPWKTEEAEFFIECDQRIMSTAKAELGIVEPIL-TADGKNAWLSTNKAPL 2777 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK------------------------ 580 + DI+ KQ + L + + E Sbjct: 2778 RDVQGNVMGILAMIEDITPLKQAEETLKNINEELEARVSERTAALEQTNHALAEAKEIAD 2837 Query: 581 -ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS+FLA +SHE+RTPL I+G+++++ +PR I + G+ +L Sbjct: 2838 SANQAKSEFLANMSHELRTPLNGILGYAQILNRSDQI---SPRDKRGLEVIHQCGSHLLT 2894 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD+SKIE+ K+ L+ P L +S + + L A +K I + N++P+ + Sbjct: 2895 LINDILDLSKIEARKLELNPHPTDLLTLLSSVVDMFHLKATQKGIELLFQLDNDLPKGVE 2954 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEK 755 D + +Q+ +N++ NA+ FT G +N + + DTGVG+ +L + Sbjct: 2955 IDEKRFRQVLINLMGNALKFTEKGSVTFQILQLEANAGQATLRFAIIDTGVGIATEQLSR 3014 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYD 812 K F Q+ + + EGTGLGL +++ +V G + S G+ + PL Sbjct: 3015 LFKAFEQVGDPRNH-TEGTGLGLAISQRIVQLMGGDIQVSSQLGAGSEFSFCVTVPLAQ 3072 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 60/521 (11%), Positives = 144/521 (27%), Gaps = 46/521 (8%) Query: 89 IDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQ 140 + G + ++ +++ ++ +S D + + L++ Sbjct: 1696 LGEEG-FIDCNQAAIDLFRYTQKSEIVTLQPYQISPERQADGQLSVDKTAAIMEETLQKG 1754 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 ++ + +G +++ PI + I+ + Sbjct: 1755 SS-QFEWLHQRADGETF--WAEVSLTPIQYQGELIVH----SIIRDISDRKAAEISLRES 1807 Query: 201 DKKFSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + K+ +L G + D + S P + H DD Sbjct: 1808 EAKYRNLLSNLDGAVYRSQYDADWTLEFVSDAIADLSGYPAADFIDNRHRSYASIIHPDD 1867 Query: 253 VLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRN 307 V + ++ S + + + + + N S + + Sbjct: 1868 VERVDRIAAKAVAARQSFSMEYRILHRDGSIRWVTEKGKGIFNESNQFLYFEGVIFDISD 1927 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + E T ++ + F N F L Y + + Sbjct: 1928 RKQMETALHLSEARAKATFEQAAVGFLEVDISTQQCVRVNDHFCQLIGYSRAELL-GMSV 1986 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + ++ + + + ++ + F Q Sbjct: 1987 IEFTHPDDIHESKAMLQQLYA----QEIEDFTLEKRYLRKD-STYFWSETTVFLVDLQDG 2041 Query: 426 ENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 E + G+ + + + + E L S++E+T D I +G I S N++ + Sbjct: 2042 EAVYSVGLVQDISEKKRLEAEHEQAEANSRLLASVVESTDDAIITKTLDGTITSWNQSAT 2101 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 LFGY + + +P + + + + + T+ K + + Sbjct: 2102 NLFGYTEAEAMGQPILMLFPPDRYKEEVEIIARLKN--KECIEHFETIRLHKTGHPIDIS 2159 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579 + I L S + + DI E K + +L K E Sbjct: 2160 VTISPLIDSQGEVIGASKIVRDIRERKAREQELILTKFALE 2200 Score = 156 bits (395), Expect = 1e-35, Method: Composition-based stats. Identities = 55/506 (10%), Positives = 136/506 (26%), Gaps = 38/506 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNHIGD-LLKRQNTWYG 145 DA L+ +S+ + G A I + ++ + I + + ++ Sbjct: 1828 DADWTLEFVSDAIADLSGYPAADFIDNRHRSYASIIHPDDVERVDRIAAKAVAARQSFSM 1887 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +G+ + I++ + +F F G ++ + + Sbjct: 1888 EYRILHRDGSIR--WVTEKGKGIFNESNQFLYFEG--VIFDISDRKQMETALHLSEARAK 1943 Query: 206 HLHEIKK-----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--D 252 E V + + + + + K Sbjct: 1944 ATFEQAAVGFLEVDISTQQCVRVNDHFCQLIGYSRAELLGMSVIEFTHPDDIHESKAMLQ 2003 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L ++ T E+ L + + + G + + + + Sbjct: 2004 QLYAQEIEDFTLEKRYLRKDSTYFWSETTVFLVDLQDGEAVYSVGLVQDISEKKRLEAEH 2063 Query: 313 AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + L V+ G + N S L Y + + + L Sbjct: 2064 EQAEANSRLLASVVESTDDAIITKTLDGTITSWNQSATNLFGYTEAEAMGQP--ILMLFP 2121 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 ++ ++ CI + ++ + E + + Sbjct: 2122 PD---RYKEEVEIIARLKNKECIE-HFETIRLHKTGHPI-DISVTISPLIDSQGEVIGAS 2176 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + + + ++++ + LE T GI IN +G +S N + GY ++ Sbjct: 2177 KIVRDIRERKAREQELILTKF----ALENTEIGIFWINSDGQFISVNESACIRLGYDPDE 2232 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLP 549 + + TEI + K++ + + I + Sbjct: 2233 LCNLYVWDITPGFFAEDWLEHWTEISKKGYSR---FEVFHQAKDKTIFPVEIMSNYIEYQ 2289 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAK 575 + DISE K + + + Sbjct: 2290 GIGYLFAQVQDISERKAAEKERILTQ 2315 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 50/508 (9%), Positives = 135/508 (26%), Gaps = 44/508 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + I++ G ++E +G ++ + + D++ + + ++ Sbjct: 2206 IFWINSDGQFISVNESACIRLGYDPDELCNLYVWDITPGFFAEDWLEHWTEISKKGYSRF 2265 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + T V I + G+ F V + L + S Sbjct: 2266 EVFHQAKDKTIFPVEIMSNYIEYQG-----IGYL-FAQVQDISERKAAE-KERILTQFAS 2318 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++ Y S Sbjct: 2319 ENTATSIFWINRTGSLINVNRSACATLGYPPDELKQMFIWDIDPLFPAEVWSNYWEQLSL 2378 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + F + + + + L+ + + S ++ T + Sbjct: 2379 NGYERFESLFQAKDGSTFPVEIMGNYLEYEGEGYI--FAEVQDISDRKAAEKVLQFTQYS 2436 Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNN 379 VD ++ G Y+N + + Y D ++ +S +P Sbjct: 2437 VDNAADCIFWIKPDGGFAYSNHAASRMHGYSIDDLMLMSVFDVNPTISKAFWSPHWQTIK 2496 Query: 380 AIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 V L D + +++ E + Sbjct: 2497 EQGSVSLESQHQNRDGQLFPVEIVANYLEFEGEEYNFVRVR------------------- 2537 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + ++++ ++ L ++L + + + ++ N ++ G V +I+ Sbjct: 2538 DISARKAAEQELILKQNHLEALLNNIPQMAWLKDADSQFIAVNEPFAQACGLSVGEIIGL 2597 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554 Q+ ++++ R+ +E+ S + L L Sbjct: 2598 TDCDIWPQDMAQSYREDDFKVMASGHRKRVEEPF--SQADGTLGWLETTKTPFQDEQGRM 2655 Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAE 579 DI+E K + +L +K++ + Sbjct: 2656 AGTVGIAADITERKAAEQELYESKQLLK 2683 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 44/420 (10%), Positives = 107/420 (25%), Gaps = 23/420 (5%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107 +E + + +S+ + F + + I G + + G Sbjct: 2406 EYEGEGYIFAEVQDISDRKAAEKVLQFTQYSVDNAADCIFWIKPDGGFAYSNHAASRMHG 2465 Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167 ++ M + DV+ + + +K Q + ++ +G V I L Sbjct: 2466 YSIDDLMLMSVFDVNPTISKAFWSPHWQTIKEQGSVSLESQHQNRDGQLFPVEIVANYL- 2524 Query: 168 IYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 EF G F V L + ++ + Sbjct: 2525 ------EFEGEEYNFVRVRDISARKAAEQELILKQNHLEALLNNIPQMAWLKDADSQFIA 2578 Query: 227 QQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL---TSEESSLPEQEDFHTINLN 281 P ++ LT+ D+ ++ + S +E F + Sbjct: 2579 VNEPFAQACGLSVGEIIGLTDCDIWPQDMAQSYREDDFKVMASGHRKR-VEEPFSQADGT 2637 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF-FVY 336 + Q+ + + ++ L +D P + Sbjct: 2638 LGWLETTKTPFQDEQGRMAGTVGIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKD 2697 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + N +F + + S D+I + P ++ R T A Sbjct: 2698 RNSVYLGCNQAFTEMAGFTSSDEIVGQTD----YELPWKTEEAEFFIECDQRIMSTAKAE 2753 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + I + ++ + M + + + + ++ +L + Sbjct: 2754 LGIVEPILTADGKNAWLSTNKAPLRDVQGNVMGILAMIEDITPLKQAEETLKNINEELEA 2813 Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 37/328 (11%), Positives = 94/328 (28%), Gaps = 43/328 (13%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + + Q ++ + L R A E ++ + Sbjct: 1641 GERAAAELERQQAQEALEQLNQELEARVRDRT-AQLAASEQRLQTLFNQAADAVLLLGEE 1699 Query: 340 NLFYANPSFLLLTKYKSVDDI-----------EIAGGL-----STLLDAPKLSDNNAIKP 383 N + + L +Y +I A G + + L ++ Sbjct: 1700 GFIDCNQAAIDLFRYTQKSEIVTLQPYQISPERQADGQLSVDKTAAIMEETLQKGSSQFE 1759 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + R+D A L IQ+ E + I + D + Sbjct: 1760 WLHQRADGETFWAEVSLTPIQYQGELIVH-------------------SIIRDISDRKAA 1800 Query: 444 KRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDI---LRKPFT 498 + + + ++L + + + + + A++ L GYP D + + Sbjct: 1801 EISLRESEAKYRNLLSNLDGAVYRSQYDADWTLEFVSDAIADLSGYPAADFIDNRHRSYA 1860 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 + + ++ + ++ ++E L + ++ + + + Sbjct: 1861 SIIHPDDVERVDRIAAKAVAARQSFSMEYRILHRDGSIRWVTEKGKGIFNESNQFLYFEG 1920 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DIS+ KQ + L ++ A+ Sbjct: 1921 VIFDISDRKQMETALHLSEARAKATFEQ 1948 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 15/230 (6%) Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 G P L + + D I L M F + Sbjct: 1584 GVQEAFPLDPDLVEMGVDSYLGTALKDRSGQVIGVICILDYETIENIEFARMVLQVFGER 1643 Query: 422 NQFPENMPQNGIEPEDVDTRINKR------KMEIEVMQLCSILEATSDGIAIINREGIIL 475 Q E ++ + R ++ +L ++ +D + ++ EG + Sbjct: 1644 AAAELERQQAQEALEQLNQELEARVRDRTAQLAASEQRLQTLFNQAADAVLLLGEEG-FI 1702 Query: 476 STNRAVSKLFGYPVED----ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 N+A LF Y + + + + + ++ + + + + L Sbjct: 1703 DCNQAAIDLFRYTQKSEIVTLQPYQISPERQADGQLSVDKTAAIMEETLQKGSSQFEWLH 1762 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAE 579 + + + + + + + + DIS+ K + L ++ Sbjct: 1763 QRADGETFWAEVSLTPIQYQGELIVHSIIRDISDRKAAEISLRESEAKYR 1812 >gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1436 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 130/763 (17%), Positives = 258/763 (33%), Gaps = 52/763 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G L+E S L + +G ++GM + DV + + + L Sbjct: 304 LDGRGSLQEASHGLCRLLGRGRADLLGMNVADVCAPEDL---SRLNAALACGGRMQRLRL 360 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 ++G V +L P + G + L Sbjct: 361 RL-MDGDGRAVDCELVLTP---QEESMDGAAWLLQAEDLGPRQSSSRKAAGAQAQLEALA 416 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEK-YPLLT 263 + L + H D+ +K + Sbjct: 417 GAFDVGRWEWDASAQSLRWDARMRALHGVGSEEKVDWPRWRGCVHPDEQAVWDKFWAEEL 476 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + ++ S + Sbjct: 477 GDVAEAGWDCRIVDGEGRLRWFRLFARVERDESGRALRADGLCWDAGNLQEGQAELRRVR 536 Query: 324 E----TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E +D P + +AN ++L + D L Sbjct: 537 EELQTVLDAMPAMVSYWDGNLHNVFANRAYLDWMGLEMADVRGR-----HLRHVIGDERY 591 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A +P + + +A+ A I + + + Q + Sbjct: 592 RANQPYIQGALNG--VASLAERCIIDLSGQERHLLAHYVPHW--QQERVQGFYVFVTDIT 647 Query: 439 DTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR--K 495 + +R+ + +L I+++ SD I + G I + ++ GY ++++ Sbjct: 648 LLKQAQRERQEVQARLQGIIDSASDFAIIATDLRGEISIFSAGAERMLGYRADEMVGLAS 707 Query: 496 PFTVFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKITLGSTKEEKLLSLRII 544 P + L + E+ ++ + K+ + + + ++ Sbjct: 708 PMILHLPEEVARRERELSEELGRPVSGFDVFVEKTRGGGSITQEWTYLHKDGRRIPVSLV 767 Query: 545 IKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + D+ K+ L AK+ AE+ S KS+F+A +SHEIRTP+ Sbjct: 768 TTGIWQDGWLYGFVCIAKDVRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMN 827 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G E++ N R + Y + + S ++ I+ND+LD SK+E+GK+ Sbjct: 828 GVLGMLELLSNTRLDGV----QRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARAR 883 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 LDE + +++ ++A KR+ + + +P ++ D ++Q+ +N+ NAI FT Sbjct: 884 YDLDEVLGALAAMMSMHAARKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTA 943 Query: 721 SGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G ++ +S + ++ VRDTGVGM L PF Q +S R GTGLG Sbjct: 944 EG-EVAVSVGREKRDGRDWLLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLG 1002 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 L +++ +V+ G+ + S P +G+ PL + Sbjct: 1003 LTISRRLVELMGGEIGVESRPGEGSRFWFALPLEPADKEPPAV 1045 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 53/545 (9%), Positives = 143/545 (26%), Gaps = 49/545 (8%) Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W W G + L+A + ++ + + Sbjct: 190 WGVLMARWRPLGVADLLLPALSACLLLDATGALLFLPLMAVLACETLIRLFPEAMPAPLR 249 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDV-- 253 + L + + +Q+ R+ + + A D Sbjct: 250 QPEPLALSVQLLFWLAAALLPHAIRQAARGDAERGLGRRRLMQALDGMEAGCALLDGRGS 309 Query: 254 -----------LKTEKYPLLTSEESSLPEQEDFHTINLN-------------------QY 283 L + LL + + ED +N + Sbjct: 310 LQEASHGLCRLLGRGRADLLGMNVADVCAPEDLSRLNAALACGGRMQRLRLRLMDGDGRA 369 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + T Q S + +L ++ F G Sbjct: 370 VDCELVLTPQEESMDGAAWLLQAEDLGPRQSSSRKAAGAQAQLEALAGAF---DVGRWE- 425 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK---LSDNNAIKPVMLYRSDRTCIAASARL 400 + S L + + G + + + + + +A + Sbjct: 426 WDASAQSLRWDARMRALHGVGSEEKVDWPRWRGCVHPDEQAVWDKFWAEELGDVAEAGWD 485 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 I + ++ + +G+ + + + + ++ +L ++L+A Sbjct: 486 CRIVDGEGRLRWFRLFARVERDESGRALRADGLCWDAGNLQEGQAELRRVREELQTVLDA 545 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 ++ + + NRA G + D+ + + Y+ L Sbjct: 546 MPAMVSYWDGNLHNVFANRAYLDWMGLEMADVRGRHLRHVIGDERYRANQPYIQGAL-NG 604 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + E+ + + +E+ L + + + + + DI+ KQ + + + + Sbjct: 605 VASLAERCIIDLSGQERHLLAHYVPHWQQERVQGFYVFVTDITLLKQAQRERQEVQARLQ 664 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 SDF A ++ ++R ++ +E + R + + + + Sbjct: 665 GIIDSASDF-AIIATDLRGEISIFSAGAERMLGYRADEMVGLASPMILHLPEEVARRERE 723 Query: 640 IVNDL 644 + +L Sbjct: 724 LSEEL 728 >gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1611 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 133/763 (17%), Positives = 269/763 (35%), Gaps = 52/763 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D++G I++ +G ++IG +L D+ + +LLK+ + Sbjct: 632 LDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGYSINSLE 691 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + I L PI F R + + ++ + + L Sbjct: 692 LSMLRSNGT-VMSIMLNVNPIQDTEGNFIMSR--ATLFDISERKEAEKTLQKYADEITDL 748 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + L + + Sbjct: 749 YNNAPCGYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKSCQIFQQNFEEF 808 Query: 265 EESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK-----------ESFEYLSHRNHPSL 311 ++S + +F + + +++ + + + R + Sbjct: 809 KQSGWVKGLEFQMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALRERKQI 868 Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + L +D G + N + Y +++ I ++ Sbjct: 869 EQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKT--TPAII 926 Query: 371 DAPK------------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 P+ L + R I+ + + Sbjct: 927 HDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPVL-LSVT 985 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 N + GI + + +R + +L LEA+ DG+ N E + + Sbjct: 986 ALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDGLWDWNIETGEVYFS 1045 Query: 479 RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 +++ GY V ++ + + + L L + TK Sbjct: 1046 PRYAEMLGYRVNELPPNVTTWERLVYPKDMIWVKEILDSHLKDSTTS-YDFDYRVRTKSG 1104 Query: 537 KLLSLRI---IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + ++ + T DI++ K + +L AK+ A + KS FLA Sbjct: 1105 QWKWIADYGKVVARDGEGKPLRMLGTHKDITQRKHIELELQKAKETAIAANLSKSIFLAN 1164 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL AI+GF++++ + + E I+RSG +L +++D+LD+SKIE Sbjct: 1165 MSHELRTPLNAILGFTQLLGRD---TSLSAYHQERLQIINRSGEHLLGLIDDILDLSKIE 1221 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 +G++ L L + ++ A K I + +N+PR I D + ++QI +N Sbjct: 1222 TGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDDNLPRYIKIDSKKLRQILIN 1281 Query: 711 ILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +L+NAI FT G + ++ + + VI V DTGVG+ EL+ + F Q + Sbjct: 1282 LLNNAIKFTHQGTVTLRVNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGK 1341 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +I +G+GLGL +++ +V GK + S +G++ P+ Sbjct: 1342 KIN-QGSGLGLAISQKLVQLMGGKIEVNSILNQGSIFSFEIPV 1383 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 55/575 (9%), Positives = 162/575 (28%), Gaps = 73/575 (12%) Query: 63 SNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNY--AFKMIGMRLC 119 ++TN + + F TW + +S + +G F+ Sbjct: 316 TSTNTALKQTQYQFQQAIEATNLGTWQWNLLSNNVILSPQTETLLGLQNCRFEGTNEAFF 375 Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 D+ +P L+ + W ++ + L +Y + + + Sbjct: 376 DLLSRDDREP------LINSLQVSILNASEWQLDHQINDRWVSLMGKCLYDESGQ--AIQ 427 Query: 180 GFGIVHVNRVDNDPRALGK----RLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 GI+ + K RL+ + E+++ + +++E + Sbjct: 428 MIGIIKDITHRKETELKLKKFNERLENRVNQRTAELREANHQLQEELLKRHQIEEALQQK 487 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPL--------------------------------- 261 + + A + Sbjct: 488 SAEFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEVYGQTTEMLYVSSEEYYEQ 547 Query: 262 ------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 LT++E + P + + + + + ++++N + ++ S Sbjct: 548 DRKRFNLTAKEQNKPYEIRYRRKDSTIFFTETVGSSVKDNQENVIGFVGIVRDISERKEA 607 Query: 316 DEGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E + + P + + S+G + N + L Y I L L+ Sbjct: 608 QETLKKYADEITDLYNNAPCGYHSLDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLI 667 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + + ++ ++ + +++ + + Sbjct: 668 ------PKSRKTFSQHFELLKQGYSINSLELSMLRSNGTVMSIMLNVNPIQDTEGNFIMS 721 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + ++ ++ ++ + G ++ G+ + N K GY E Sbjct: 722 RATLFDISERKEAEKTLQKYADEITDLYNNAPCGYHSLDSNGVFVQINNTELKWLGYTRE 781 Query: 491 DILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++ K F+ + + + E + LE + + K+ + + + Sbjct: 782 QVIGKLKFSDIITPKSCQIFQQNFEEFKQSGWVKGLEFQMVC--ADGKIFPVILNATAIK 839 Query: 550 FSSCYSLTMH----DISEWKQEKNKLSHAKKIAEK 580 + + DI+E + + ++ +K Sbjct: 840 DADGKFIMSRSTIFDITEQQAALRERKQIEQELQK 874 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 13/166 (7%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + D ++ Q +EAT+ G N + + L G Sbjct: 312 ERDRTSTNTALKQTQYQFQQAIEATNLGTWQWNLLSNNVILSPQTETLLGLQNCRFEGTN 371 Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 F L ++ + + L + L+ + ++ K L S Sbjct: 372 EAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDR-------WVSLMGKCLYDESGQ 424 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + DI+ K+ + KL + E + ++ L +H++ Sbjct: 425 AIQMIGIIKDITHRKETELKLKKFNERLENRVNQRTAELREANHQL 470 >gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1625 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 118/741 (15%), Positives = 254/741 (34%), Gaps = 53/741 (7%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKR----QNTWYGKTTL 149 S +G + ++ G D+ + L +++ + + Sbjct: 430 VYFSPGYVSMLGYDSAEVPGHVQTWLDLIHPE--EKEKAYQANLDCINNLVDSFAVEYRM 487 Query: 150 WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G +V I + + R G + + + + Sbjct: 488 QARNGN--WVWILGRGSAVKRDETGK--ALRMIGTHTDITRRKLAEESLREQEFFYRSIL 543 Query: 209 EIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E + + D+ + R + ++ + L L+ E+ Sbjct: 544 ESINDAVFLTDAQGDLTFVCPNAHVIFGRSRQELLEMANIEHVLGSRLIKSG-ELVEDEQ 602 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLT 322 + + L E YL F + Sbjct: 603 EISNRECAIKDSRGHWRYLLVNIKRLPEQLHEKGLYLYCCRDVTEKKKTEDTFRQTLERY 662 Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 V+ + L +AN S L+ Y + ++ D D + Sbjct: 663 RLIVENANEGIRILDRQARLSFANRSMALMLGYSPEKVTDH-----SIWDFIHPEDQDKF 717 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R RL I N + ++ E + + + + Sbjct: 718 NRIWENRKSGKAEKYELRL--IHRNGSTVWTLVSSTPLFKDK--EFNGSFALVADITEKK 773 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILR 494 + ++ + L S+ E G + + ++ R + + +++ Sbjct: 774 HLEEELRKQQEILTSMEEMARVGGWEWDIDARTMTWTRGAYLIHDFEVNHNPTLSSELIS 833 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 K + + S +++ + ++ + + L +R + S Sbjct: 834 KSLECYYK-EDRSRVSNAFQACAEKGVA--YDQEFPFVSARGRRLWVRTAAWPVYDSGRI 890 Query: 555 SLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+E KQ + L A+ A++ + KS+FLA +SHEIRTP+ +IG ++++ Sbjct: 891 VRVAGHIMDITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLM 950 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + P A I SG +L ++ND+LD SKIE+G++ L +L + + Sbjct: 951 DTELRP----EQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDL 1006 Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 SL+ + A+EK + + ++P ++ D ++QI N++ NAI FT G ++++ Sbjct: 1007 ASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQG-EVVVRVQ 1065 Query: 731 HT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + ++ V+DTG+G+ +++ F Q+ S + GTGLGL +++ + + Sbjct: 1066 RSEVSADDVLLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAE 1125 Query: 787 ANMGKFYIFSTPAKGTLIEII 807 G+ + S +G Sbjct: 1126 MMGGEVGVQSEYGRGCKFWFT 1146 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 49/559 (8%), Positives = 138/559 (24%), Gaps = 63/559 (11%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 S + L F+ + G L ++ L + G + + Sbjct: 2 TTKNSSFPPSQNLPGGTGFMDCRDLLENAPTGIFTSTPEGKLIYVNSALARMFGYDSPQD 61 Query: 114 IGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 + + D++ L+ +P + + L ++ + + +GT + A + Sbjct: 62 MVESVTDIASQLYANPADRAAFLRHLEDKKELVNHEYRMRRRDGT--EFWVSRNARAVLD 119 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + +GF + ++K L E + + I S Sbjct: 120 EDGRLVACQGF--TTDITERKQVQEALGASEEKHRLLFETMAQGVVYQDAEGVIISVNPA 177 Query: 231 PPHL--RMKNKVSSLTEYYAHK----------DDVLKTEKYPLLTSEESSLPEQEDFHTI 278 + ++ + L + + + + +H + Sbjct: 178 AERILGLTSEQIVRRSSMDPQWKMIQEDGSEVPGSQHPAMTALKSGKTTGPVTRGVYHPV 237 Query: 279 NLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSAYFDEGENLTPETVD-KCPIP 332 + + + + + + E + + + Sbjct: 238 SNDHIWLSITAVPMFHPGDSKPCQVYTTFEDITRLKEQHDELRKREQMFTNLFEKHAAVK 297 Query: 333 FFVY-SHGNLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKLSDNNAIK----P 383 V G + AN + + + I+ LS +L + Sbjct: 298 LMVDPDTGAIIDANHAAAEFYGWSREELKKKYIQEINTLSPDELHKELERARSRDKFWFE 357 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +D + I+ + L I + D + Sbjct: 358 FQHRLADGSIRDVEVFSSKIESHGRQVLY-------------------SIIQDITDRKKA 398 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFL 501 ++++ + +EAT DG+ + + + + GY ++ + + + Sbjct: 399 EKELLESRERFSLAMEATKDGLWDWDVSTGEVYFSPGYVSMLGYDSAEVPGHVQTWLDLI 458 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSL 556 + ++ + + + + + Sbjct: 459 HPEEKEKAYQANLDCINNLVDS-FAVEYRMQARNGNWVWILGRGSAVKRDETGKALRMIG 517 Query: 557 TMHDISEWKQEKNKLSHAK 575 T DI+ K + L + Sbjct: 518 THTDITRRKLAEESLREQE 536 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 23/270 (8%) Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNN 379 + ++ P F G L Y N + + Y S D+ + S L P Sbjct: 24 RDLLENAPTGIFTSTPEGKLIYVNSALARMFGYDSPQDMVESVTDIASQLYANP------ 77 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + L + + + ++ ++ ++ + G + + Sbjct: 78 ADRAAFLRHLEDKKELVN-HEYRMRRRDGTEFWVSRNARAVLDEDGRLVACQGFTTDITE 136 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--- 496 + + + + + E + G+ + EG+I+S N A ++ G E I+R+ Sbjct: 137 RKQVQEALGASEEKHRLLFETMAQGVVYQDAEGVIISVNPAAERILGLTSEQIVRRSSMD 196 Query: 497 FTVFLEQNTPSVM----NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + Q S + + +T + S + + + + L I + Sbjct: 197 PQWKMIQEDGSEVPGSQHPAMTALKSGKTTGPVTRGVYHPVSNDH-IWLSITAVPMFHPG 255 Query: 553 C-----YSLTMHDISEWKQEKNKLSHAKKI 577 T DI+ K++ ++L +++ Sbjct: 256 DSKPCQVYTTFEDITRLKEQHDELRKREQM 285 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 26/246 (10%), Positives = 69/246 (28%), Gaps = 16/246 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D L + + +G K+ + D D N I + K + Sbjct: 676 LDRQARLSFANRSMALMLGYSPEKVTDHSIWDFIHPEDQDKFNRIWENRKSGKAEKYELR 735 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L G+ V +++ P++ +++EF+G F +V ++ + + + Sbjct: 736 LIHRNGST--VWTLVSSTPLF-KDKEFNG--SFALVADITEKKHLEEELRKQQEILTSME 790 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR----------MKNKVSSLTEYYAHKDDVLKTEK 258 E+ + + + +S E Y +D + Sbjct: 791 EMARVGGWEWDIDARTMTWTRGAYLIHDFEVNHNPTLSSELISKSLECYYKEDRSRVSNA 850 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + ++ F + + + + + S H + Sbjct: 851 FQACAEKGVAYDQEFPFVSARGRRLWVRTAAWPVYD-SGRIVRVAGHIMDITELKQSQLD 909 Query: 319 ENLTPE 324 + Sbjct: 910 LQEARD 915 Score = 38.1 bits (87), Expect = 6.4, Method: Composition-based stats. Identities = 28/378 (7%), Positives = 92/378 (24%), Gaps = 21/378 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + DA G L + G +++ M + + + + + Q Sbjct: 550 VFLTDAQGDLTFVCPNAHVIFGRSRQELLEMANIEHVLGSRLIKSGELVE--DEQEISNR 607 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + G Y+ +++ LP + + ++ +++ Sbjct: 608 ECAIKDSRGHWRYLLVNIKRLPEQLHEKGLYLYC----CRDVTEKKKTEDTFRQTLERYR 663 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPLL 262 + E + + + KV+ + H +D K + Sbjct: 664 LIVENANEGIRILDRQARLSFANRSMALMLGYSPEKVTDHSIWDFIHPEDQDKFNRIWEN 723 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + N + L + KE + + + +E Sbjct: 724 RKSGKAEKYELRLIHRNGSTVWTLVSSTPLFKD-KEFNGSFALVADITEKKHLEEELRKQ 782 Query: 323 PETV----DKCPIPFFVYSHG-NLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKL 375 E + + + + + L+ ++ + +L K Sbjct: 783 QEILTSMEEMARVGGWEWDIDARTMTWTRGAYLIHDFEVNHNPTLSSELISKSLECYYKE 842 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + L + + + + G Sbjct: 843 DRSRVSNAFQACAEKGVAYDQEFPFVSAR---GRRLWVRTAAWPVYDS-GRIVRVAGHIM 898 Query: 436 EDVDTRINKRKMEIEVMQ 453 + + + ++ ++ + Sbjct: 899 DITELKQSQLDLQEARDK 916 >gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1105 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 112/760 (14%), Positives = 266/760 (35%), Gaps = 51/760 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLL---KRQNTWYG 145 +++E+ + G ++ M + + + Sbjct: 217 EQRNSYVNDEIAQGWGYTPAEIQAMGKDLFTQLLHPEDLARLPTYFERFNSAHPGEVLSF 276 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKK 203 + + + G + + ++ +R GF + GI ++ +++ Sbjct: 277 EYRIRHVNGEWRWF---CSYDTVH--SRTVEGFPKYLLGIAFDITERRHIEISLRQSNER 331 Query: 204 FSHLHEIKKGHSSVEK------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 F + E+ +Q + + D Sbjct: 332 FELAAAAVNCLIYDWEIHRSSVERTQGLTQVLGYTQQEAEPTFEWWQQLIHPDDQQRVNN 391 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ + + + + + +++ + + + + Sbjct: 392 QFMASMANGNRYSIEYRIRHKDGRYVWVQDQGFAVRDTNGQVVRVVGASADITEQQAILR 451 Query: 318 GENLTPETVDKCPI-PFFVYSHGNLFYANPSFL---LLTKYKSVDDI------------E 361 + D+ I S + A + + + + Sbjct: 452 EQQ--AALRDRQQIETNLRESEERIRLATSAAELGMWFWNITTNELVWTEKCKELFGLGP 509 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L ++ + R + + ++ W+ + + Sbjct: 510 EVEMSYELFLNCIHPEDRQRLNEAIARCFQEKVEYDIEYRSL-WSDGSIHWIAAKGRVFY 568 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + G + + + + QL ++++ GI + I N A Sbjct: 569 EADDQPGRMMGTAQDITGRKQIENDLRQRETQLRRLVDSNIIGIMFATPD-HITEANEAF 627 Query: 482 SKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 ++ GY E++L ++ + ++L++ + EK + K+ + Sbjct: 628 LEMVGYTREELLAGKVRRKQMTPPEYHALDEQGIEQLLTVGVCNPFEKEYI--RKDGSRI 685 Query: 540 SLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + I + + + D++ KQ + L + ++ + +K +FLA +SHE+R+ Sbjct: 686 PILIGGALVEKDPPSWICFILDLTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELRS 745 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G+S ++K+++F R I+R+ L + ++++LLD+S+I GK+NL Sbjct: 746 PLNPILGWSSLLKSRKFDEATTNRA---LETIERNTQLQIKLIDELLDVSRIIRGKLNLT 802 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 F V+L + A+ V+L A K I I+ N+ ++ D ++Q+ N+LSNA+ F Sbjct: 803 FATVNLASVIDAALETVRLIAESKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKF 862 Query: 719 TPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 TP G + +S + + +++V+DTG G++ L + F Q +S+ + G G Sbjct: 863 TPPNGSVEVSLSSSGELASHSALIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLG 922 Query: 776 LGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 LGL + + +V+ + G S +G + + P+ S Sbjct: 923 LGLAIVRNLVELHGGTVTAASPGEGQGAIFTVRLPVMKES 962 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 10/141 (7%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNH 511 S+L + +G+ + +G I + N ++ G E ++ + FL ++ + N Sbjct: 28 SLLASGEEGMVLQLADGTIQACNATCDRILGLTTEQLVGQNLLDSKWQFLHEDGSPLPNE 87 Query: 512 YLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWK 565 I + + L + +L+ L + + L T DI+E+K Sbjct: 88 THPAIAAQKTGKPCLNVVCGFYKPNGQLVWLLLSSQPLFQGGVDTPFAIVTTFLDITEFK 147 Query: 566 QEKNKLSHAKKIAEKESSHKS 586 Q + + ++ +S Sbjct: 148 QAQLEEKGNCTEDTQQVEEES 168 >gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 849 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 119/522 (22%), Positives = 214/522 (40%), Gaps = 19/522 (3%) Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLL 351 + + E ++ P + G + N SF+ L Sbjct: 306 EGEAAVLSIGRDISEQKKNEEALRASERKYRTLFEEFPGGIAQFDTGGVITLCNESFVNL 365 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 T + + I + L +LLD + + ++ L I N + ++ Sbjct: 366 TGNREKEKI--SFSLLSLLDGGNPDEKSGTYL--------PEVSVHNDLKYISRNGKEAI 415 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + ++ E + + + + + L ++++ +R Sbjct: 416 PVAITYKPLMSENSELAGGIVLVEDLTGIKRLEAVRLQQTECLRKLVDSVPVPAFCKDRN 475 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 GI ++ N A E+IL K F + E+L + T Sbjct: 476 GIYIACNTAFETFMSMQKEEILGKSMHNFAPSEIAEKCHTMDIELLKHKKTRVY--ETSI 533 Query: 532 STKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + + S M DI+E KQ + K+ AK AE + K + Sbjct: 534 KFADGSIHQIMFNKLVFSGVTEEDSMLLGIMIDITEHKQAEEKMLQAKMAAEAANRAKIN 593 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+ +SHE+RTPL A+IGFS+++ ++ GPL N + Y I +SG+ +LD++ND+LDI Sbjct: 594 FIVNMSHELRTPLNAVIGFSDLLLSETAGPL-NEKQKRYTENISKSGSHLLDVINDVLDI 652 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S++E G + L++E V + + E ++ + EK I I + I D KQI Sbjct: 653 SRLELGNIELYYETVDIPGVIEEVRRVLSSLSAEKNIRIEYKVEQGLKTIDVDRVKFKQI 712 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+L+NAI F+ G++ I + + V + V+D G+G+ + + PF QI S Sbjct: 713 LYNLLNNAIKFSSEDGKVNIK-ARSEGDMVEISVKDEGIGINEADYARVFLPFVQIDESI 771 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G GLGL L K V+ + G+ ++ ++P KG+ P Sbjct: 772 SRKHGGVGLGLALVKRFVELHGGQVWVEASPGKGSTFTFRIP 813 Score = 80.8 bits (198), Expect = 8e-13, Method: Composition-based stats. Identities = 49/369 (13%), Positives = 111/369 (30%), Gaps = 21/369 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + E + + G K++G + D+ +H+ + LK+ + +T Sbjct: 227 DMKGRVMEANHVACEIFGYTRSKILGKHIKDLQTGIHLIEFGQQIEKLKQTGYFIFETDS 286 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT P ++ I E+ G I + ++K+ L Sbjct: 287 LRKDGT--VTPQEINNRLI-----EYEGEAAVLSIGRDISEQKKNEEALRASERKYRTLF 339 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E G + I +L + ++ D ++ E S Sbjct: 340 EEFPGGIAQFDTGGVITLCNESFVNLTGNREKEKISFSLLSLLDGGNPDEKSGTYLPEVS 399 Query: 269 LPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTP 323 + + + N + L + + E + L A + Sbjct: 400 VHNDLKYISRNGKEAIPVAITYKPLMSENSELAGGIVLVEDLTGIKRLEAVRLQQTECLR 459 Query: 324 ETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + VD P+P F +G N +F + + + + ++++ Sbjct: 460 KLVDSVPVPAFCKDRNGIYIACNTAFETFMSMQKEEILGKSM---HNFAPSEIAEKCHTM 516 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + L + +T +I++ + + F + E+ GI + + + Sbjct: 517 DIELLKHKKT----RVYETSIKFADGSIHQIMFNKLVFSGVTEEDSMLLGIMIDITEHKQ 572 Query: 443 NKRKMEIEV 451 + KM Sbjct: 573 AEEKMLQAK 581 Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 8/150 (5%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K E + + +++E+++D I I + +G ++ N ++FGY IL K Sbjct: 204 KRESKDKKFKTLIESSNDSILIHDMKGRVMEANHVACEIFGYTRSKILGKHIKDLQTGIH 263 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE 563 + ++ T K+ + I + + + DISE Sbjct: 264 LIEFGQQIEKLKQTG---YFIFETDSLRKDGTVTPQEINNRLIEYEGEAAVLSIGRDISE 320 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 K+ + L +++ +F ++ Sbjct: 321 QKKNEEALRASERKYRTLFE---EFPGGIA 347 >gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192] Length = 1272 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 131/767 (17%), Positives = 270/767 (35%), Gaps = 67/767 (8%) Query: 89 IDAHGYLKEISEELPK----TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 D+ + + G ++G + VS + + + ++ +T Sbjct: 272 TDSDRRILYANTAFETWAYLLEGRPLPSLVGKPISLVSRAIDAHLRPLLEEA-EKSDTVI 330 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + W + + ++ P++ +++ R I+H L + + + Sbjct: 331 LREISW--QHRAEEITTEVTIFPLH---KDYETARWLIILHNITHRKRTERLLSQQKQFY 385 Query: 205 SHLHEIKKGHSSVEKEKYDIF----------------SQQSPPPHLRMKNKVSSLTEYYA 248 + E D + P R+ S Sbjct: 386 RQMLEALPIGVYTLDPLSDYTVSLWNPYMERITGVPRQKALGVPETRLFPPPLSEELEVL 445 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ----------------YFGTL 292 ++ + L+ S E P QE+ + + + Sbjct: 446 NRKILEDPLTRVLVPSMEVEFPHQEESRIVKVQKRGVLTPEGELDHILVLLEDITEQRRT 505 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351 + + +L + + + + NP+ L Sbjct: 506 EEELERYRNHLEEEVARKSAELARAAMEMDAILRSTESVAICSMDRDLRIQIFNPTLARL 565 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 ++ + L + + ++ L Sbjct: 566 SRMYFKRPPRREMRFTDLFPTRTMQRQVETAVSRVL--SGQTFTTR---FSVSRRNLLPL 620 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + K N+ E + I + +R+M + +I + G II+ Sbjct: 621 HLEVVISPKRNEGGEILGATVIAMDITQRATVERQMRL----FKAIADTAPYGTVIIDAN 676 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 I+ N ++++ GY +E+++ + ++F + + LT + + + + Sbjct: 677 HTIVYANPYMARIHGYRLEEVMGQHLSIFHTEEQYEKLIEELTRAEDVGVMPS--QEIWH 734 Query: 532 STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + + + + D+S K+ + KL AK+ AE+ KS+ Sbjct: 735 VYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLDMSLQKEAEQKLKEAKEEAERAMRAKSE 794 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL AIIGF++++ + + Y + I SG +L ++ND+LD+ Sbjct: 795 FLANMSHEIRTPLNAIIGFTDLLA----SSFPSGKEASYLDAIRSSGKNLLMLINDILDL 850 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+GKM L + PV L + E ++ + K + +A +P + D ++Q Sbjct: 851 SKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFILDYAPALPPTVEIDELRLRQ 910 Query: 707 IALNILSNAIHFTPSGG-QIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762 + N++ NAI FT G ++ + + + E ++ + V DTG+G+ E E + F Q Sbjct: 911 VLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKVDLTISVEDTGIGIRPEEREAIFQSFHQ 970 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL ++K +V+ G + S KGT + P Sbjct: 971 SSGQDTRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVNIP 1017 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 19/357 (5%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + E + EE + FH T F L Sbjct: 182 EPEFLATVEPDARKSLEEFLAAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRILPFLLLDV 241 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364 E L +D V + YAN +F + Sbjct: 242 HAETLYFESLQEQRRLFTSVLDSFTDYILVTDSDRRILYANTAFETW------AYLLEGR 295 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L +L+ P + AI + + + + L I W T + ++ Sbjct: 296 PLPSLVGKPISLVSRAIDAHLRPLLEEAEKSDTVILREISWQHRAEEITTEVTIFPLHKD 355 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVS 482 E I + +R + + +LEA G+ ++ + + N + Sbjct: 356 YETARWLIILHNITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYME 415 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKL 538 ++ G P + L P T + +IL L + L E E ++ Sbjct: 416 RITGVPRQKALGVPETRLFPPPLSEELEVLNRKILEDPLTRVLVPSMEVEFPHQE-ESRI 474 Query: 539 LSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + R ++ + + DI+E ++ + +L + E+E + KS LAR + Sbjct: 475 VKVQKRGVLTPEGELDHILVLLEDITEQRRTEEELERYRNHLEEEVARKSAELARAA 531 >gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 1003 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 133/772 (17%), Positives = 264/772 (34%), Gaps = 79/772 (10%) Query: 87 WNIDA-HGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGD-------- 135 W D L S+E+ + G + L + + + Sbjct: 267 WRWDLITHTLTY-SDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAIQGKAD 325 Query: 136 ------LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 LK T W + TN P+++ G+ Sbjct: 326 EIIYRIQLKDGQT-RTIRAQWEVSVTNEGRPMEM-----------------VGMAQDITE 367 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQS---PPPHLRMKNKVSSLTE 245 + K+ + E S + + R + V + + Sbjct: 368 QVMIEQQSLENENKYKLITENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSSF 427 Query: 246 YYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 Y + +D+ + + P + + + + + E +S Sbjct: 428 DYVYAEDIAPLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEVNCKYISTQDGQKNEIIS 487 Query: 305 HRNHPSLSAYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359 S + E E + P + + G+ AN + LT Y + Sbjct: 488 IARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDEL 547 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 I + P +++ + + + + + I S L I + T Sbjct: 548 IG-------MYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTIN--I 598 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 E + GI + + +++ +L +L S+GI ++ G + N Sbjct: 599 PIFVEDEVVGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINP 658 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTK 534 A + + Y + +P +++ + L + + + +I L Sbjct: 659 AGAAMLDYEPTTTIGRPCDQIIKEIRHDGTFYRGEDSPLVRAVKQGVPLSRAEIVLWR-G 717 Query: 535 EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + + + DI++ + ++ AK+ AE+ K++FL Sbjct: 718 DGTSFLADYQVNPIWDQGERKGAVMVFRDITD----EKEIIRAKENAERADQAKTEFLTM 773 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTP+ IIG E++ + Y + + S +L I+N++LD SKIE Sbjct: 774 MSHELRTPMNGIIGMIELLSTTEL----DEDQQNYIHILMESSGSLLHILNEILDFSKIE 829 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALN 710 +G M L+ EP+ L + + L A +K + + + N+P ++ D ++Q+ +N Sbjct: 830 TGNMTLNHEPIDLRSLLEVVVDLFSAKAKQKGLSLSFINSANVPDVIIGDALRLRQVLVN 889 Query: 711 ILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 ++SNAI FT G I +S T + +V+DTG+G+ + F Q+ Sbjct: 890 LISNAIKFTHEGS-ITMSVEGLRRTGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHP 948 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 S + GTGLGL ++K +V+ G + S G+ P + H Sbjct: 949 SLNRKYGGTGLGLAISKKLVELMGGVIGVESRENAGSSFYFTIPTHTLQDDH 1000 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 48/506 (9%), Positives = 135/506 (26%), Gaps = 27/506 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G ++ IS +G +MIG + + G L ++++ + Sbjct: 155 ADGIIEYISPSATDILGYTQEEMIGQHRGKYYHQVDSEQMKEPGKLFSEKDSF--VRRIR 212 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 EG Y+ + + I E G + Sbjct: 213 HKEGH--YLWFETSFQLIRGAQGEIDKVLAIG--RNITKRKTDEDTLAHAQRIAKIGSWR 268 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + ++ + N + ++ + L E+ + + Sbjct: 269 WDLITHTLTYSDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERL--EQVVRTAIQGKADE 326 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + T + + N E + + ++ Sbjct: 327 IIYRIQLKDGQTRTIRAQWEVSVTNEGRPMEMVGMAQDITEQVMIEQQSLENENKYKLIT 386 Query: 331 IPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + Y +PS L Y+ + + + +++ A Sbjct: 387 ENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSS------FDYVYAEDIAPLQD 440 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L + I + + + Q + I + + ++ + Sbjct: 441 YLENCLEGKMLTPITFRYIHKDGRHI-WFEVNCKYISTQDGQKNEIISIARDISERKLME 499 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 K++ + S+ E + +N +G ++ N+ + +L GY +++++ F + + Sbjct: 500 FKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEK 559 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 + + + + K+ + + + I + DI Sbjct: 560 DMARTLFHFNQAKEGIPQS---YDLTIIHKDGRPIEINTINIPIFVEDEVVGVYGITRDI 616 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587 +E + ++ + + S+ Sbjct: 617 TERIRTMEEIKKLSRELTLLLNTVSE 642 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 86/267 (32%), Gaps = 18/267 (6%) Query: 323 PETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + DK P + + + N F +T+ K + +++ +L + Sbjct: 11 EQMFDKLPFGAILISAVDEPVAMVNDRFCEITETKRSNLLQLKPSEIQVLSNLSIQQTLE 70 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVD 439 S + I+ + + E Q +EP V Sbjct: 71 SFIY------DPTSTLSRDSYFIRQDGRQMHVTVRISLLEHPAQDRTPWIMCCLEPGTVQ 124 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + L I ++ D I+I + +GII + + + + GY E+++ + Sbjct: 125 EGSTLPAIIKNEELLALISKSGQDLISISSADGIIEYISPSATDILGYTQEEMIGQHRGK 184 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + Q M D + KE L + + + Sbjct: 185 YYHQVDSEQMKEPGKLFSEKDS-----FVRRIRHKEGHYLWFETSFQLIRGAQGEIDKVL 239 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKES 582 +I++ K +++ L+HA++IA+ S Sbjct: 240 AIGRNITKRKTDEDTLAHAQRIAKIGS 266 Score = 45.0 bits (105), Expect = 0.054, Method: Composition-based stats. Identities = 40/354 (11%), Positives = 95/354 (26%), Gaps = 29/354 (8%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F ++P ++++ G ++ L + G ++IGM + + Sbjct: 513 FEYNPSA-----VYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEKDMARTLFH 567 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDN 191 + K T+ +G PI++ +PI+ + E G +GI Sbjct: 568 FNQAKEGIPQSYDLTIIHKDGR----PIEINTINIPIFVED-EVVGV--YGITRDITERI 620 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 K+L ++ + L + M + + T Sbjct: 621 RTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPA--GAAMLDYEPTTTIGRPCDQ 678 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRN 307 + + E S + + L++ + L + R Sbjct: 679 IIKEIRHDGTFYRGEDSPLVRAVKQGVPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERK 738 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + E + A FL + ++ + G+ Sbjct: 739 GAVMVFRDITDEKEIIRAKENA---------ERADQAKTEFLTMMSHELRTPMNGIIGMI 789 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 LL +L ++ +L S + + + ++ + P + Sbjct: 790 ELLSTTELDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLR 843 >gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1778 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 154/742 (20%), Positives = 277/742 (37%), Gaps = 71/742 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G +I++ + +G +++G RL D + +L K+Q Sbjct: 956 LDAEGRYVKINDTELQWLGYSREQLLGRRLADFLTPESGEIFESNFELFKQQGYLKDLLL 1015 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + P+ L + +Y+ E+ R + + ++ + Sbjct: 1016 EMISSNGH-VFPVLLNSSAVYNPQGEYLYSR--STLFDITDLKSAQIALQKNHNLLQSIT 1072 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + E S L + + +D+ Sbjct: 1073 IAQSQFITSENRLTIFEGLLS--SLLTLTDSEYGFIGEVMFRDN---------------- 1114 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 T ++ F ++ +S+ + F + + D Sbjct: 1115 ------------GGATMEETFLKIRGVPYLKTHSISNVAWDEATEKFYQENHEKGMEFDN 1162 Query: 329 CPIPF-FVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 F V G AN PS L++ L P S + + V + Sbjct: 1163 MNTLFGAVIMTGKPVIANSPSSDPRRGGTPN----GHPPLNSFLGLPFFSGSTMVGIVGI 1218 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 H + + +T + + + + + I K Sbjct: 1219 ANKPGG-------YHEEMIDDLQAFLVTCGNLIEGYRLHRKRNEAEEAKKAAEQEIAK-- 1269 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505 QL SI EA DGI I+ + N A +FGY ED++ + Sbjct: 1270 ------QLASI-EAAGDGIGIVQDDL-YQYVNHAHLVMFGYSEPEDLVGHSWRKIYSPTE 1321 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + + IL D T + + ++ + + + L DIS+ + Sbjct: 1322 IQRFENEVFPILMRDRYWTG--EAIATRQDGTSFAEELSLT-LTEDKLLICVCRDISDRR 1378 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + KL + + + K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R + Sbjct: 1379 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 1437 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +L+++ND+LD++KIE+G+M L S+ +I+ ++ A +K I Sbjct: 1438 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 1497 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVIL 739 I +P + D R ++Q+ +N+L+NA+ FTPS G+I + V Sbjct: 1498 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 1557 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L K KPF QI ++ + EGTGLGL L K +V+ + G + S Sbjct: 1558 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 1617 Query: 800 KGTLIEIIFP----LYDTSHPH 817 G+ P L T+ PH Sbjct: 1618 SGSQFIFEIPCDDILIGTNTPH 1639 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 58/548 (10%), Positives = 131/548 (23%), Gaps = 55/548 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G ++EE + G + IG+ D N + + + Sbjct: 547 VFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEAWKQTQANHHPFK 606 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND----PRALGKRLD 201 + G N + + +P +S +G+ G + L Sbjct: 607 EEYRLE-AGENQ-LWVFGQIVPEFSVEETVNGY--VGTITDISEQKAALCEREKAETALQ 662 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------------- 236 L K + D + + Sbjct: 663 DLNQSLEATVKQRTQELSHLSDRLQLAIKSAQMGIWDWDISQNHLTWDDQMYKIYGVSPL 722 Query: 237 --KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 V +D L E + + + K ++N Sbjct: 723 ECPQTVELWKNSLHPEDAELTQAILQESLRGEREFNPEFRIVRPDGSIVFIKANALIIRN 782 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPE-------TVDKCPIPFFVYSHGNLFYANPS 347 E + + S + +D I + G + YAN Sbjct: 783 PEGEPQRMIGTNVDITESKQAESDRQQLLRELSDLKLAIDHSAIVAVTDASGVITYANNR 842 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F ++ Y + I G + + ++ + S + Sbjct: 843 FCEISGYSQEELI----GKTHRIINSGYHPHSFFTNLWRTISSGKVWHGEICN---RSKN 895 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 N + I + + + ++ ++ + G Sbjct: 896 GFIYWTESTIVPFLNSQKKVSQYLAIRFDITARKQAEARLLDYSHEIEDLYNKAPCGYHS 955 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++ EG + N + GY E +L + FL + + + L Sbjct: 956 LDAEGRYVKINDTELQWLGYSREQLLGRRLADFLTPESGEIFESNFELFKQQGYLKDLLL 1015 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESS 583 + + + + + + L DI++ K + L + + + Sbjct: 1016 EMI--SSNGHVFPVLLNSSAVYNPQGEYLYSRSTLFDITDLKSAQIALQKNHNLLQSITI 1073 Query: 584 HKSDFLAR 591 +S F+ Sbjct: 1074 AQSQFITS 1081 Score = 83.9 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 93/272 (34%), Gaps = 21/272 (7%) Query: 335 VYSHGNLFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 +Y G++F A + + + ++ + L+ LS++ A P Sbjct: 420 IYQDGDIFVA--ADIDQVGLSECHLSLLKQLEVRANLVVPIVLSNHEAESPSQSLW---G 474 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 A +T W+ E + + + A + + + ++ E + + + ++ Sbjct: 475 LFAIHQCSNTRLWSSEEIQMVQQLALQVAIAIQQAIAYDELQKELQERQKIQTYLQETEE 534 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + ++ + G+ ++EG + N ++ G + + + + + +N Sbjct: 535 RYATLTDLIPVGVFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEA 594 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWK--- 565 + + ++ E + L + I + Y T+ DISE K Sbjct: 595 WKQTQAN--HHPFKEEYRLEAGENQ-LWVFGQIVPEFSVEETVNGYVGTITDISEQKAAL 651 Query: 566 ----QEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + L + E ++ L+ +S Sbjct: 652 CEREKAETALQDLNQSLEATVKQRTQELSHLS 683 >gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 1274 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 106/547 (19%), Positives = 214/547 (39%), Gaps = 39/547 (7%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SH 338 L + S + + + ++ L + + ++ + Sbjct: 247 QGPRRILTSGSFLHDISGKYAGGVQVFVDVTERYNMEQALRLHKQANNSSSECVTIFNEN 306 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 L YAN + + L + + G+ + D + Sbjct: 307 AQLIYANQAAIKLFNRSMAELMG--LGIEEVYPG---GDKILFNLIKGDFWQGELTPV-- 359 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-------RINKRKMEIEV 451 ++ + + + + + R ++++E E Sbjct: 360 -------KDNPNIYVHVHANPIRENKGKIIGFYVAARDITEHKMAQLRLREARQEIEREA 412 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L +I+ + IA+ + I+ N K+ G ++++ + + T + Sbjct: 413 AKLRAIVSILNASIALADANDRIIEVNEKCLKITGKSRQELIGRSIWDLHQGETLDRVRQ 472 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNK 570 + + + EE + + I + L + D++E K + Sbjct: 473 IVDTYKQDPNHPPIN---ITRRLEESDVIMSIQPVYRDKIYDGILLMVVDVTEVAAAKRQ 529 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 A++ AE+ + KS+FLA +SHEIRTP+ I+GF+E++ N + E I Sbjct: 530 AEEAREAAERANQAKSEFLANMSHEIRTPMNGILGFAEILLQTNL----NSQQEESVRII 585 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + G +LD++ND+LD+SKIESGKM L SL + + EA+++++ EK + I+ S Sbjct: 586 QQCGENLLDLINDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISI 645 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------ILRVR 742 ++P D ++Q+ N+LSNA FT G + + + V + V Sbjct: 646 QKDLPDYFKGDPTRIRQVLNNLLSNAAKFTHEG-HVEVKVNGQKDHSVETDSFTLVFSVS 704 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L+ + F Q S + GTGLGL +++++++ G+ + S +G+ Sbjct: 705 DTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGS 764 Query: 803 LIEIIFP 809 P Sbjct: 765 KFSFSIP 771 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 7/165 (4%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G E + + R + E +L +I E+ ++ + +++ I N A + FG Sbjct: 142 WAGEGPESRLTEMQAVNRALTNEKNKLRTIFESMNECVFVVDSNMRITEINAAAAAYFGV 201 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E++L L N H + S + +E + ++L+ Sbjct: 202 APEEVLGMHCASLLGCNCDLGKCHLYHAMKSGSCYKDIEIVINTKQGPRRILT---SGSF 258 Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 L S D++E + L K+ S + F Sbjct: 259 LHDISGKYAGGVQVFVDVTERYNMEQALRLHKQANNSSSECVTIF 303 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 30/365 (8%), Positives = 95/365 (26%), Gaps = 21/365 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D++ + EI+ G +++GM + H+ +K + + Sbjct: 179 VFVVDSNMRITEINAAAAAYFGVAPEEVLGMHCASLLGCNCDLGKCHLYHAMKSGSCYKD 238 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + + ++ + +++G G + + + + + Sbjct: 239 IEIVINTKQGPRRILT--SGSFLHDISGKYAG--GVQVFVDVTERYNMEQALRLHKQANN 294 Query: 206 HLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 E + +F++ +V + +++K + + Sbjct: 295 SSSECVTIFNENAQLIYANQAAIKLFNRSMAELMGLGIEEVYPGGDKIL--FNLIKGDFW 352 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + P N + K + G + ++ + Sbjct: 353 QGELTPVKDNPNIYVHVHANPIRENKGKIIGFYVAARDITEHKMAQLRLREARQEIEREA 412 Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V + + N L +T + I + + + Sbjct: 413 AKLRAIVSILNASIALADANDRIIEVNEKCLKITGKSRQELIGRSIWD----LHQGETLD 468 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + V Y+ D + + E+ + M+ P + + + E Sbjct: 469 RVRQIVDTYKQDPNHPPINIT----RRLEESDVIMSIQPVYRDKIYDGILLMVVDVTEVA 524 Query: 439 DTRIN 443 + Sbjct: 525 AAKRQ 529 Score = 44.6 bits (104), Expect = 0.076, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 49/136 (36%), Gaps = 7/136 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+ + E++E+ K G ++IG + D+ +D I D K+ Sbjct: 430 DANDRIIEVNEKCLKITGKSRQELIGRSIWDLHQGETLDRVRQIVDTYKQDPNHPPINIT 489 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +E ++ + ++ P+Y R++ + G +V + + + ++ Sbjct: 490 RRLEESD----VIMSIQPVY-RDKIYDGI--LLMVVDVTEVAAAKRQAEEAREAAERANQ 542 Query: 210 IKKGHSSVEKEKYDIF 225 K + + Sbjct: 543 AKSEFLANMSHEIRTP 558 >gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1778 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 153/742 (20%), Positives = 278/742 (37%), Gaps = 71/742 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G ++++ + +G +++G RL D + +L K+Q Sbjct: 956 LDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFELFKQQGYLKDMLL 1015 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + P+ L +Y+ E+ R + + ++ + Sbjct: 1016 EMISSNGH-VFPVLLNYSAVYNPQGEYLYSR--STLFDITDLKSAQIALEKNHNLLQSIT 1072 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + E S L + + +D+ Sbjct: 1073 LAQSQFITSENRLTIFDGLLS--SLLTLTDSEYGFIGEVMFRDN---------------- 1114 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 T ++ F ++ +S+ + F + + D Sbjct: 1115 ------------GGATMEETFLKIRGVPYLKTHSISNVAWDEATEKFYQENHEEGMEFDN 1162 Query: 329 CPIPF-FVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 F V G AN PS L++ L P S + + V + Sbjct: 1163 MNTLFGAVIMTGKPVIANSPSSDPRRGGTPN----GHPPLNSFLGLPFFSSSTLVGIVGI 1218 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 H + + +T + + + + + I K Sbjct: 1219 ANKPGG-------YHEEMIDYLQAFLVTCGNLIEGYRLHRKRNEAEEAKKAAEQEIAK-- 1269 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505 QL SI EA DGIAI+ + N A +FGY ED++ + Sbjct: 1270 ------QLASI-EAAGDGIAIVQDDL-YQYVNHAHLVMFGYSEPEDLVGHSWRKIYSPTE 1321 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + + I+ D T + + ++ + + + L + DIS+ + Sbjct: 1322 IQRFENEVFPIVMRDRYWTG--EAIATRQDGTSFAEELSLT-LTEDNLLICVCRDISDRR 1378 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + KL + + + K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R + Sbjct: 1379 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 1437 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+RS + +L+++ND+LD++KIE+G+M L S+ +I+ ++ A +K I Sbjct: 1438 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 1497 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVIL 739 I +P + D R ++Q+ +N+L+NA+ FTPS G+I + V Sbjct: 1498 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 1557 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L K KPF QI ++ + EGTGLGL L K +V+ + G + S Sbjct: 1558 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 1617 Query: 800 KGTLIEIIFP----LYDTSHPH 817 G+ P L T+ PH Sbjct: 1618 SGSQFIFEIPCDDILIGTNTPH 1639 Score = 142 bits (357), Expect = 4e-31, Method: Composition-based stats. Identities = 60/548 (10%), Positives = 131/548 (23%), Gaps = 55/548 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G ++EE + G + IG+ D N + N Sbjct: 547 VFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEAWKQTQ-VNHHPF 605 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND----PRALGKRLD 201 K G N + + +P +S +G+ G + L Sbjct: 606 KEEYRLEAGENQ-LWVFGQIVPEFSVEETVNGY--VGTITDISEQKAALCEREKAETALQ 662 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------------- 236 L K + D + + Sbjct: 663 DLNQSLEATVKQRTQELSHLSDRLQLAIKSAQMGIWDWDISQNHLTWDDQMYKIYGVSPL 722 Query: 237 --KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 V +D L E + + + K ++N Sbjct: 723 ECPQTVELWKNSLHPEDAELTQAILQESLRGEREFNPEFRIVRPDGSIVFIKANALIIRN 782 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPE-------TVDKCPIPFFVYSHGNLFYANPS 347 E + + S + +D I + G + Y N Sbjct: 783 PEGEPQRMIGTNVDITESKQAESDRQQLLRELSDLKLAIDHSAIVAVTDASGVITYVNNR 842 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F ++ Y S + I G S + + + S + Sbjct: 843 FCEISGYSSEELI----GKSHRIVNSRCHPPGFFANLWRTISSGKVWHGEICN---RSKN 895 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + N + I + + + ++ ++ + G Sbjct: 896 GSIYWTESTIVPFLNSHKKVSQYLAIRFDITARKQAEARLLDYSHEIEDLYNKAPCGYHS 955 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++ EG + N + GY E +L + FL ++ + + + Sbjct: 956 LDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFELFKQQGYLKDMLL 1015 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESS 583 + + + + + + L DI++ K + L + + + Sbjct: 1016 EMI--SSNGHVFPVLLNYSAVYNPQGEYLYSRSTLFDITDLKSAQIALEKNHNLLQSITL 1073 Query: 584 HKSDFLAR 591 +S F+ Sbjct: 1074 AQSQFITS 1081 Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 67/200 (33%), Gaps = 14/200 (7%) Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 W E + + + A + + + ++ E + + + ++ + ++ + G Sbjct: 487 WLSEEIQIVQQLALQVAIAIQQAIAYDDLQRELQERQQIQTCLQETEERYATLTDLIPVG 546 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + ++EG + N ++ G + + + + + +N + Sbjct: 547 VFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEAWKQTQVN--HHP 604 Query: 525 LEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWK-------QEKNKLSH 573 ++ E + L + I + Y T+ DISE K + + L Sbjct: 605 FKEEYRLEAGENQ-LWVFGQIVPEFSVEETVNGYVGTITDISEQKAALCEREKAETALQD 663 Query: 574 AKKIAEKESSHKSDFLARVS 593 + E ++ L+ +S Sbjct: 664 LNQSLEATVKQRTQELSHLS 683 >gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1002 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 117/781 (14%), Positives = 265/781 (33%), Gaps = 83/781 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144 W +G L +++ +G + + + ++ ++ I + L+ Sbjct: 22 LWR--KNGALIDVNPTYATILGRTVPETLNLNYWQITPENYLASERTILEQLEQTGCHQA 79 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGKRL 200 + +G VP+ ++ + I ++ E + + R + K+ Sbjct: 80 YEQEYLHKDGHL--VPVKVSTVMI-EKDGEKLMWSSVEDISNIRQTQKERQQSEKILKQS 136 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + ++ L V + F + + + + D E Sbjct: 137 EARYRSLVTTNTQIIWVSSPEGICFELKDWIAYTGQTLAEAENGGWIDAVHPDDRGYTGE 196 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSA 313 + + + S + + N + + E++ + A Sbjct: 197 AWGIAVANRSQYQIEYRIRGKDGNYRYFWVWGAPVIEEDGNVREWIGTCTDIHDRKLAEA 256 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDA 372 + V + + ++ + ++ ++E G L + Sbjct: 257 ENQRLKERYRSLVTASSQIVWGTTPEGWGISSEMLTWIAYTGQNEAEVEGWGWLDPIHPD 316 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + A + R + + ++ + Q G Sbjct: 317 DRTRSLEAWNAAVANR------SIYQTEYQLRGKDGTYRYFSVCGVPVLKQDGSIQEWIG 370 Query: 433 IEPEDVDTRINKRKMEIEVMQLCS---------------------ILEATSDGIAIINRE 471 + D ++ + + QL + IL+ +DG+ +++ Sbjct: 371 TCTDIHDRKLAEMALRQLNQQLEARVAERTAALQNTLAEAQGLNAILDNLADGLLVVDTT 430 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N A + G + ++ + + S + L Sbjct: 431 GQITHYNPAFLAMHGLTANTLNGH-----YQELPIFGLADLIEHTRSHPGEVFTADVALA 485 Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + I + +L + D++ K+ K+D Sbjct: 486 KDRIGQAVGTAIFKRTDTQEVAACFGSALLIRDVTAEKEI--------------DKMKTD 531 Query: 588 FLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGNPRYI---------EYANYIDRSG 634 F++ VSHE+RTPLT+++GF+ E ++ F L + N I Sbjct: 532 FISTVSHELRTPLTSVLGFASIIQEKLQKDVFPILSTEDRKLQKTIKRVGDNLNIIVSEA 591 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + ++ND+LDI+K+E+GK+ +P+ E + A + + + T + + Sbjct: 592 ERLTSLINDVLDIAKMEAGKVEWQMQPIDPGELLDWATTSTAALFETNGLQLLTEIESGL 651 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P+I+ D + Q+ +N++SNA+ FT G + + V + V DTGVG+ + Sbjct: 652 PQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRVKQDKDG-VCISVIDTGVGIAPEDQP 709 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 K + F Q+ ++ + +GTGLGLP+ K +V+ + G+ ++ S P G++ P+Y ++ Sbjct: 710 KVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEPGHGSVFSFHIPIYASN 769 Query: 815 H 815 H Sbjct: 770 H 770 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 4/131 (3%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + E G+ + + G ++ N + + G V + L + +N + L Sbjct: 10 RLLWEKCPVGLVLWRKNGALIDVNPTYATILGRTVPETLNLNYWQITPENYLASERTILE 69 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLS 572 ++ Q E+ L K+ L+ +++ + + ++ DIS +Q + + Sbjct: 70 QLEQTGCHQAYEQEYL--HKDGHLVPVKVSTVMIEKDGEKLMWSSVEDISNIRQTQKERQ 127 Query: 573 HAKKIAEKESS 583 ++KI ++ + Sbjct: 128 QSEKILKQSEA 138 >gi|186474026|ref|YP_001861368.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196358|gb|ACC74322.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 869 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 116/750 (15%), Positives = 247/750 (32%), Gaps = 38/750 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F W D G ++ ++ + +G A ++G + I+P + N Sbjct: 11 FVWRADRAGAVRYVNPWASRYLGLPAPHIVGRNWHEFVHPDDINPVLDALRQMHDGNLLR 70 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI----VHVN-RVDNDPRALGKR 199 + G ++ L + G + K Sbjct: 71 NVDVRL-LRGDGVFHWHTLHLQAQRDESGRIGDTVGVATDIHHCRHAWAMYEASERRLKA 129 Query: 200 LDKKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + ++K H + ++ +++S S + + + + + Sbjct: 130 ACQGAGMGAWEWDMKSRHVRMTEQLAELYSFPSGTDAVTLTDLWNRVAPEQREPFQQEVA 189 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + E + F S + Sbjct: 190 QALERGGPFELDFQLDGTAAPPRWLRMRGHPEFDQQGVLSCVHGVTFDISRQRAAEERLI 249 Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E V+ + ++ G + A+ + T +E G L P Sbjct: 250 LSERRYRALVESTGALVWSAHADGEIRPADEPWGKFTG-ADPQRLENWGWLD--FVHPDD 306 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + R D T + R+ + + + G Sbjct: 307 REMAREAWLTVLR-DGTAGTITFRMRRY---DGHYRMVQAHAAPLYDAHGTLQEWFGTTT 362 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--EDIL 493 + + +E ++L ++A I ++ + S + + G P E + Sbjct: 363 DVTAQHEAQAAIEARSLRLTVAMQAAEIHIVAVD----LTSWTLSFE-MGGEPRVGETLT 417 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + + + V++ Y+ ++ + + + + + E+ + ++++ Sbjct: 418 YEAALSRIHPDDRPVLDGYVRQLATGGDPGAHFEFRVLNPRGEQWMEGSALLQRGADGKP 477 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 ++ DI+E K+ + L + K +FLA ++HE+R PL I + Sbjct: 478 LRLIASVVDITERKRMELML-------RETDRRKDEFLAMLAHELRNPLAPIRTAIA-LF 529 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + G + R + + R + IV+DLL++S+I G++ L EP+ + AV A Sbjct: 530 EKHDGK--DQRSADLIELMRRQTEHMTRIVDDLLEVSRITQGRIALQLEPILVGTAVYHA 587 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + +R I+ ++ + D+ + QI +NIL+NA +TP G I IS Sbjct: 588 VEAMAASVEARRQHIQVDVSDATAWVRGDVTRISQILVNILNNASKYTPEDGSISIS-AR 646 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V + DTG G++ L K + F Q + G G+GL L K +V+ + G Sbjct: 647 ADEMWVEIVTTDTGSGISAELLPKVFELFSQGERTLDRSNGGLGIGLSLVKKLVELHDGT 706 Query: 792 FYIFST-PAKGTLIEIIFPLYDTSHPHDCI 820 + S +GT + + P H + Sbjct: 707 IAVESEGEGRGTTVTVSLPRLHHHERHSAL 736 Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 6/125 (4%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +R G + N S+ G P I+ + + F+ + + + L ++ D Sbjct: 8 LPSFVWRADRAGAVRYVNPWASRYLGLPAPHIVGRNWHEFVHPDDINPVLDALRQM--HD 65 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576 + + ++ S DI + +++ Sbjct: 66 GNLLRNVDVRLLRGDGVFHWHTLHLQAQRDESGRIGDTVGVATDIHHCRHAWAMYEASER 125 Query: 577 IAEKE 581 + Sbjct: 126 RLKAA 130 >gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1434 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 127/730 (17%), Positives = 253/730 (34%), Gaps = 38/730 (5%) Query: 101 ELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159 + G + I D + + T L + Sbjct: 226 RASEIFGVEPGRRIPYDEFLAWIHPEDRDRVLAMHQMCLTTFEPGDLTFLVQTPNGAIRH 285 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 + L A I ++ E + GI+ A + + E + Sbjct: 286 -VQLKAGVIRNQAGEAE--QCIGILKDVTDRMLQDAALHESEANYRTTFEQVAVGVANVS 342 Query: 220 EKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK---YPLLTSEESSLPEQED 274 +++ L D L + +L E S ++ Sbjct: 343 PDGMFVRVNKGLCDLLGYESDELLQLDFQQITHPDDLNADLTLVAQVLNGEIPSYRMEKR 402 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-- 332 + + + +++ ++S + ++K + Sbjct: 403 YIRKDGDVVWANLNVSMVRDREGAPKHFISVVESIQERKEAEAALQTYNNQIEKLSLVAS 462 Query: 333 ------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + G + + N +F LT+Y D + G LL P + M Sbjct: 463 KTQHSVVITDARGRIEWVNEAFTRLTEYTLDDCLGKIPG--DLLQGPNTDPDTVNFIHMA 520 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 R +R+ + + + + N E + + D + + Sbjct: 521 LRENRS---IDTEIINYSKSGDEY-WICLKIDPVFNDNGELTNFIATQVDVTDRKRAEET 576 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQN 504 Q ++L+A GI +G I N ++ GY ++ R + Sbjct: 577 AARSQKQFEALLKADILGIMTCRYDGRIEQANDEFLRIVGYTRDEFERGELDWRSLTPER 636 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISE 563 + ++ + EK K+ ++ + + + + ++ L D + Sbjct: 637 WLEKDQAAIEQLRKTGAARPWEKE--YRRKDGIVIPVYLGVTLIEDNTDLCLCFVLDATA 694 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ + L A++ AE S KSDFLA +SHE+RTPL +IG +E++ N + R Sbjct: 695 QKRTEASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTELLANTDL----DARQ 750 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ SG +L ++ND+LD SKIE+G++ L L + + ++++ L + K Sbjct: 751 TQFVRACKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDDLMNVMGLRVSGKD 810 Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVI 738 I + + + D ++Q+ +N++ NAI FT G +I + ++ Sbjct: 811 IQMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTERG-KISLRVEPLELTEDRAKLR 869 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG+G+ L++ K F Q+ +S GTGLGL + K++V+A G+ + S Sbjct: 870 FAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVEAMGGEMGVDSIQ 929 Query: 799 AKGTLIEIIF 808 G+ Sbjct: 930 GVGSEFYFTL 939 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 54/536 (10%), Positives = 148/536 (27%), Gaps = 50/536 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146 + G +++ L +G + +++ + ++ ++ + + + ++ + Sbjct: 341 VSPDGMFVRVNKGLCDLLGYESDELLQLDFQQITHPDDLNADLTLVAQVLNGEIPSYRME 400 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR--LDKKF 204 +G V +L + R F +V + + A + + Sbjct: 401 KRYIRKDGD--VVWANLNVSMVRDREGAPKHF--ISVVESIQERKEAEAALQTYNNQIEK 456 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------DDVLKTEK 258 L K HS V + + + + D Sbjct: 457 LSLVASKTQHSVVITDARGRIEWVNEAFTRLTEYTLDDCLGKIPGDLLQGPNTDPDTVNF 516 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAY 314 + E S+ + ++ + ++Y + N++ E +++ + Sbjct: 517 IHMALRENRSIDTEIINYSKSGDEYWICLKIDPVFNDNGELTNFIATQVDVTDRKRAEET 576 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + G + AN FL + Y + +L Sbjct: 577 AARSQKQFEALLKADILGIMTCRYDGRIEQANDEFLRIVGYTRDEFERGELDWRSLTPER 636 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 L + A + R + + + + + Sbjct: 637 WLEKDQA--AIEQLRKTGAARPWEKE---YRRKDGIVIPVYLGVTLIEDNTDLCLCFVL- 690 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR--AVSKLFGYPVED 491 + + + +E + +A SD +A ++ E N +++L D Sbjct: 691 --DATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELR-TPLNGVIGMTELLANTDLD 747 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + F +++ + + ++L + +E L ++ L Sbjct: 748 ARQTQFVRA-CKSSGESLLALINDVLDFSKIEAGRLEL-----DEHEFDLMSLLDDLMNV 801 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 ++ DI ++ + + L SH +R L +IG + Sbjct: 802 MGLRVSGKDI--------------QMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNA 843 >gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1034 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 138/751 (18%), Positives = 265/751 (35%), Gaps = 55/751 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 +A G L S+ + + + V +P + Sbjct: 140 NAEGVLVPASQR-REYVVASYNEPFESTRGGVGFDFTSEPVRRAALEQARDSGEATASAP 198 Query: 148 TLWPIEGTNLYV---PIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T + G ++ P+ + I + R +G+ G+ + + Sbjct: 199 TTLVVSGEPGFLIFWPVYRSGAAINTVALRRDNITGYV-IGMFRLRDLVETAVQA----- 252 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 K L E P + +S Sbjct: 253 SKLRDLDIYLFDEGLPEDAPPFYVHAAFSRPEALDTSNISLSELIKQAPYSSRIGMAGRN 312 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + P E + L + + + + E Sbjct: 313 WRLIINPAPSYEASR--LDSIPWIALLIALLSTFAIAY----AMAHQQHAADQLRHSERR 366 Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +DK F + + G + Y +P++ + Y S + + L + Sbjct: 367 FRILIDKGGNAFAIIAADGTVRYTSPNYERILGYPSGSRLGRSTFE---LIHHEDQGEAQ 423 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L + R +++ + + PE + D Sbjct: 424 RLFSELLSKPGESRSLQMR---VRYFNGAWHWIETTATNLID-EPEIGGVLANVRDINDY 479 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV 499 + + + +L +IL+ DG I++ + L N A + GY ++L Sbjct: 480 KQAELALRENERRLRTILQTAQDGFMILDLQLRFLEVNDAYCGMSGYTRAELLNGMTIFN 539 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM- 558 ++ + I++ + T K+ + I + + + Sbjct: 540 VEAFEAYEQIHAHAHRIMTQGIDL---FETRHRRKDGSTFHVEISVHYIDSDGGVMVCFC 596 Query: 559 HDISEWKQEKNK------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 DI++ K+ + + LS + K +FLA +SHE+RTPL Sbjct: 597 RDITDRKRREAEIRHLNSELEQRVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPL 656 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+ FSE+++ + GP+ N + YI+ SG +L ++ND+LD+SK+E+G+M +H E Sbjct: 657 NGILSFSELLQEEISGPI-NEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSE 715 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 S+ E ++ V+ AN K + + S ++N+ I D + +KQ+ +N+LSNA+ FTP Sbjct: 716 IYSVVEICEASLLFVKELANRKGLQVGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTP 775 Query: 721 SGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 GGQ+++ T + + V DTG+G+ ++E+ +PF Q+ +S + EGTGLGL Sbjct: 776 DGGQVLLEVTTDATAGVIRFVVSDTGIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLA 835 Query: 780 LAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 L + + D G + S +G + P Sbjct: 836 LVRRLADLMGGSIGVESDGEGQGCRFILALP 866 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 62/225 (27%), Gaps = 17/225 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D E+++ G +++ GM + +V + + + Q +T Sbjct: 507 LDLQLRFLEVNDAYCGMSGYTRAELLNGMTIFNVEAFEAYEQIHAHAHRIMTQGIDLFET 566 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ +V I + + + A + L+ + Sbjct: 567 RHRRKDGSTFHVEISVHYI---DSDGGVM----VCFCRDITDRKRREAEIRHLNSELEQ- 618 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E+ + LR K++ + + LL EE Sbjct: 619 -------RVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPLNGILSFSELLQ-EEI 670 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 S P E + ++ L N+ + + + R Sbjct: 671 SGPINEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSE 715 >gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 981 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 97/737 (13%), Positives = 228/737 (30%), Gaps = 39/737 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W GY ++ G + G + ++ + Sbjct: 267 LVWTGQPDGYRDSYNQRWRDYTGLSTEEAQGEGWVQCLHPEDRQRVLSMWQRAVQTGGVY 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T Y A+P+ + + FG K ++ Sbjct: 327 ETE-LRLRQGTTGAYRWFLARAMPVRDEGGQII--KWFGTSTDIEKQKRAEQQLKESEEN 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTE---YYAHKDDVLKTEK 258 L E + + + + + + Sbjct: 384 LRVLAETVPQLVWTTRPDGRFDYCNQRYCEYTHAAFEHLQGYGWRQFMHPEDAERVVVLR 443 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + E E ++ +++++ + ++ ++ Sbjct: 444 QQTLQTGEPYEIEYRLRNSQTGTYRWFLARAMPVRDDTGQIIKWFGTCTDIDEQKQAEQK 503 Query: 319 ENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E + P + G Y N + T V+ ++ P Sbjct: 504 IKESEENWRVLAETVPQLVWTTRSDGQHEYVNQRWCDYTGVT-VEHMQSDRWAPLPFIHP 562 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + RL Q + + + G Sbjct: 563 DDREGTRT-LWQHALETGAMYEHEERLRNSQT--GEYRWFLTRGAPVRDDTGQIVKWFGT 619 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + + ++ ++ GI + + ++ N A ++ GY +ED+ Sbjct: 620 VTDIDEQKRMEEALRQSQERASVLMNSSIIGIFVA-EDERVVDANDAFLRMTGYTLEDLR 678 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + + + + + K+ L + + L Sbjct: 679 ERRMSWRHMTPPEYMARTLQAHQEFALHQSIIPYEKEYVCKDGSRLPVLVGAVVLQHHPF 738 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + D S K+ + + K DF++ SHE+R PL A+ ++ + Sbjct: 739 QAIAFVLDNSARKELEQR--------------KDDFISMASHELRNPLAAVKMQTQ-LVQ 783 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +R + + ++ S + ++ +LLD+SKI++G++ E V LD + E Sbjct: 784 KRLERQSHHEAATALSRVEGSVKQLERLIGELLDVSKIQAGRLEYQQEMVDLDALLHEVA 843 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +Q I++R + ++ + D + Q+ N++SNAI ++P + + + + Sbjct: 844 DTMQQIHTTHTIVVRGTAPCSL---VGDKDRLGQVFTNLISNAIKYSPGAETVEMDLSTS 900 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V +RVRD G+G+ + +K F ++ + +Q G G+GL + +V ++ G Sbjct: 901 AE-TVTIRVRDHGLGIPREQRDKIFDRFYRVTDPKQRAIPGLGMGLYIVAEIVKSHGGTI 959 Query: 793 YIFSTPAKGTLIEIIFP 809 + S G+ + P Sbjct: 960 TVESQVGTGSTFTVTLP 976 Score = 128 bits (321), Expect = 5e-27, Method: Composition-based stats. Identities = 43/544 (7%), Positives = 123/544 (22%), Gaps = 37/544 (6%) Query: 57 QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116 + + ++ + P F +D + + +G ++ Sbjct: 5 KPTKRLTPASSETLLTLLETLPGAL---FV--VDDAATIVYANASAQSILGATREEVCAQ 59 Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 L + L KR P+ T ++ + L++ Sbjct: 60 PLWRCAPQLVSTSLYQAVQKTKRTRAPSEVEYFSPV--TQTWLHVQLSST---------V 108 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 G + + + + L + G + E + + P ++ Sbjct: 109 GGLLLQFHEMGAPAPRQETVPQSEHLYLNGLDGLYSGIVVLTPEGIVLGINEVPLADAQI 168 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE------DFHTINLNQYTKKQYFG 290 + + + L + + E H + Sbjct: 169 RREEVIGQPLAQTRWWSCSPPSQEQLRAAIARASMGETVCFETVVHPREGMDRHLEVTIT 228 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFL 349 + + + + +D P + N + Sbjct: 229 PHMDVEHHIEYLVLAGIDITARKRAEAE---IHALIDAIPQLVWTGQPDGYRDSYNQRWR 285 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 T + + + G + L + RL Sbjct: 286 DYTGLSTEEA-QGEGWVQCLHPED---RQRVLSMWQRAVQTGGVYETELRLRQGTT--GA 339 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ + + G + + +++++ L + E + Sbjct: 340 YRWFLARAMPVRDEGGQIIKWFGTSTDIEKQKRAEQQLKESEENLRVLAETVPQLVWTTR 399 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G N+ + E + + F+ + + L +E Sbjct: 400 PDGRFDYCNQRYCEYTHAAFEHLQGYGWRQFMHPEDAERVVVLRQQTLQTGEPYEIEYRL 459 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 ++ + + + T DI E KQ + K+ +++ + Sbjct: 460 RN-SQTGTYRWFLARAMPVRDDTGQIIKWFGTCTDIDEQKQAEQKIKESEENWRVLAETV 518 Query: 586 SDFL 589 + Sbjct: 519 PQLV 522 >gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 1070 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 138/768 (17%), Positives = 270/768 (35%), Gaps = 65/768 (8%) Query: 98 ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIE 153 S + +G ++ + + I K+ + + + L + Sbjct: 69 FSPRWKEMLGYGDQELPNHINTWKKLLHPQDTERVMKILADHFAKKTDHYSAEFRLKCQD 128 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---EI 210 G Y I ++ R G D + L L L + Sbjct: 129 GN--YKWILSRGKALWDATGNLV--RMAGSHTDISDRKDEQILLTSLIDCIPDLVFCKDS 184 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSL 269 K + + + ++ E ++ +EE Sbjct: 185 KGVYKMCNNAFETFAGRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWIT 244 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 ++ + G L S + + E + L + Sbjct: 245 YPNGKRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKKQAERDALLSNIARQL 304 Query: 330 -------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + F + S G + S+++ + + + + N Sbjct: 305 IDQDLTTAVNFILESLGKFTKCDRSYIIRYFPEEKAWSMLHEWCNEYTPSTIHDSQNISL 364 Query: 383 PVM--------------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPF----EKANQF 424 V + R + A+A Q + +L + + Sbjct: 365 DVFPWFSKQLIEGKSICINRLEDFPPEATAEKEAYQNSLSPNLLVVPMMAGGQTVGYLGI 424 Query: 425 PENMPQNGIEPEDVDTRI-------------NKRKMEIEVMQLCSILEATSDGIAIINRE 471 N+ Q + + ++ + + IL+ ++ I I+ + Sbjct: 425 DTNLYQKWTKEDVNLLKLVGELMAIAEARAIAEEAQNESQARFAGILDNANEAIISIDEQ 484 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKI 528 I N A ++FGY +++L +PF + + + + + Sbjct: 485 QKITLFNHAAEQIFGYISDEVLGQPFNLLIPPRFTDDHYQHIQTFQNTSETARQMGGRRP 544 Query: 529 TLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 G K+ + I KL + ++ + DI+E KQ + L AK+ A+ + KS Sbjct: 545 VFGQRKDGTEFLAEVSISKIKLRGKTIFTAIIRDITERKQAEEALKRAKEQADAANRAKS 604 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHE+RTPL AI+GF++V++ + + + I RSG +L+++ND+L+ Sbjct: 605 EFLASMSHELRTPLNAILGFTQVMQRDHS---LKEEHKQNLDIIGRSGEHLLELINDILE 661 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 ++KIE+G+ L+ L + S++ L A EK + + ++P+ I D ++ Sbjct: 662 MTKIEAGRTTLNKTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLR 721 Query: 706 QIALNILSNAIHFTPSGGQI-IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760 Q+ +N+L NAI FT GG I I T+ S + V DTG G+ E+++ + F Sbjct: 722 QVLINLLGNAIKFTQEGGVILRIKTSQQSPNNQAIILTFEVEDTGPGIAIEEVDQLFEAF 781 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GQ + EGTGLGLP+++ V+ G+ + S +G+L Sbjct: 782 GQTETGRNSN-EGTGLGLPISRKFVELMGGEISVSSILGRGSLFTFTI 828 Score = 91.6 bits (226), Expect = 6e-16, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 77/285 (27%), Gaps = 22/285 (7%) Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E V + ++ + +P + + Y + LL Sbjct: 39 LRENEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLGYGDQELPNHINTWKKLLHPQ 98 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 I + A ++ N + + + G Sbjct: 99 DTERVMKILADHFAKKTDHYSA----EFRLKCQDGNYKWILSRGKALWDATGNLVRMAGS 154 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + E + L S+++ D + + +G+ N A G +DI+ Sbjct: 155 HTDISDRK-------DEQILLTSLIDCIPDLVFCKDSKGVYKMCNNAFETFAGRDRKDII 207 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K ++ E+ + +L+ P Sbjct: 208 GKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYPNGKRRLVDTLKTPFCCPEGKL 267 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 DI++ KQ++ A K+ + + L+ ++ ++ Sbjct: 268 MGTIGISRDITDRKQKEE--------AIKKQAERDALLSNIARQL 304 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 24/250 (9%), Positives = 67/250 (26%), Gaps = 25/250 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----------NHIGDLLK 138 ID + + + G + +++G + D + + + Sbjct: 481 IDEQQKITLFNHAAEQIFGYISDEVLGQPFNLLIPPRFTDDHYQHIQTFQNTSETARQMG 540 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + +G+ +GT + ++ + + + I+ K Sbjct: 541 GRRPVFGQ----RKDGTEFLAEVSISKIKLRGKT------IFTAIIRDITERKQAEEALK 590 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 R ++ + K + + + ++ + SL E + D++ Sbjct: 591 RAKEQADAANRAKSEFLASMSHELRT-PLNAILGFTQVMQRDHSLKEEHKQNLDIIGRSG 649 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 LL + + + I + T + L L + E Sbjct: 650 EHLL----ELINDILEMTKIEAGRTTLNKTQFDLYRLLDNLESMLHLKAEEKNLQLLFEK 705 Query: 319 ENLTPETVDK 328 P+ ++ Sbjct: 706 NPDLPQYIET 715 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 10/151 (6%) Query: 430 QNGIEPEDVDTRIN---KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 Q I D ++ + + + +++ T++GI N + + + ++ G Sbjct: 19 QAEIIRLKADQKVALTMQETLRENEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLG 78 Query: 487 YPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 Y +++ + L + L + + ++ + Sbjct: 79 YGDQELPNHINTWKKLLHPQDTERVMKILADHFAKKTDH-YSAEFRLKCQDGNYKWILSR 137 Query: 545 IKKLPFSSCYSLTM----HDISEWKQEKNKL 571 K L ++ + M DIS+ K E+ L Sbjct: 138 GKALWDATGNLVRMAGSHTDISDRKDEQILL 168 >gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1150 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 134/839 (15%), Positives = 286/839 (34%), Gaps = 56/839 (6%) Query: 7 ISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTN 66 +S PE + + D S D F++ + + + S Sbjct: 110 MSAPETSARPDGEDPDADESSPADDRSFQSALAFL-SEMAAMLGDQGLAELRLRRTSRKL 168 Query: 67 YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 SE TF R + D + ++ +G ++ G D+ Sbjct: 169 E-KSEATFKSLVEHLPQR-IFIKDLNSNYVTCNQIYAGDVGLTPEEIPGKTDFDLHPEEL 226 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + Q+ + ++L++ +P + G G I Sbjct: 227 ARKYRRDDHRVITQDAPLELEESYSRGDSSLWISTT--KVPYRDESGNIIGVLG--IFQD 282 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSL 243 + +A K ++ ++ + + + + ++ + + Sbjct: 283 ITRSKEQQAELKYKEQLLKNIVDTQSELICRFLPDGTLTYVNPAYCRYFNRDEQDLLGRV 342 Query: 244 TEYYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 H DD+ ++ + L + + Q + ++ + + FEY Sbjct: 343 FLPMVHDDDLQYVQECFSSLGPDRPEITYQHRIRLPDGQIRWQEWTDRAFIDEQGKVFEY 402 Query: 303 LSHRNHPSLSAYF----DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV 357 + + E E V+ L Y N ++ + Sbjct: 403 QAVGRDITEHRQAVNSLQESEQRYRGLVESQNDLIVRVDPDNRLTYVNDTYCKVFGRTRE 462 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + L+ + D D A++ + + + Sbjct: 463 ELLG--SSFTPLVHEEDIEDTLKAME------DLKTPPYRAQMQQRAMTVDGWRWIHWED 514 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI 473 +Q + G+ + D + + ++ I E + G+ +++ G Sbjct: 515 SALLDQQGRIVEIQGVGRDITDLKKAQEDLQQSEKNFRLIFENSPVGMATHEILLDEHGR 574 Query: 474 -----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 L N A G +++ + T L S ++ ++ Sbjct: 575 PVDYIFLDANPAFETHTGLSAQEVTGRRATEVLPGIENSSFIDTYAQVAFSGKTANFQEF 634 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + +I ++ + DI+E ++ + +L AK+ AE S KS F Sbjct: 635 SPPLNRH------FMISAYQMAHGQFAASFIDITELEKTRRELVRAKEAAEAASQAKSTF 688 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ AI+GF+++++ + R + I R+ + +L I+ND+LD+S Sbjct: 689 LANMSHEIRTPMNAILGFAQILERDSTLGPDHAR---HVQSISRNADHLLSILNDILDMS 745 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQI 707 +IE+G++ + +L + + + A K + + ++PR AD ++QI Sbjct: 746 RIEAGQIEHNPRDFNLHQTFEDLELMFIPRAVSKGLELTFEKNGSLPRAGHADPGMLRQI 805 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVI----------LRVRDTGVGMTNYELEKAM 757 +N+L NA FT G ++ + N E ++V+D+G G+ E+++ Sbjct: 806 MVNLLGNACKFTSQG-EVTFRISAEKNSEACGTGQGGFTLNVQVQDSGPGIDPEEMDRIF 864 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 PF Q + GTGLGL +++ G + KG+L + P+ + P Sbjct: 865 DPFHQ--GGRDPGEGGTGLGLHISRKYARIMGGDLSVSPHTEKGSLFCLQVPVQQATRP 921 >gi|332707718|ref|ZP_08427745.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332353421|gb|EGJ32934.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 930 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 116/753 (15%), Positives = 270/753 (35%), Gaps = 46/753 (6%) Query: 96 KEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152 + + +G Y ++ ++ ++ H I ++ + + + + Sbjct: 194 LIWGHNIEQVLGYYPGELTNTRQGWDELIYPDDLERYRHTIERVIVTKEPIHLEYRIRKK 253 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE--- 209 +GT Y+ ++ + + R G++ + +K+F + Sbjct: 254 DGT--YITVENKGQFYLDSSGNLN--RVLGLIVDITERKQAEEALRLSEKRFRLAVDNFP 309 Query: 210 -------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 ++ + ++ + P ++ + + K + Sbjct: 310 GTFMIYDAQRRLQFINQQGVKLTGVSDSPLLGHTDEEIYPPVFKDIYVKLLQKAVETRTP 369 Query: 263 TSEESSLPEQEDFHTINLNQYTK--------KQYFGTLQNNSKESFEYLSHRN-----HP 309 EE +L E L Y Q G +Q+ ++ + R Sbjct: 370 QVEELTLTLPEVGELTVLATYIPLLNEQGNIYQVIGIIQDTTQRKQAEVELRQAYQQLRL 429 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + +A DE + D+ PI + N +F + +Y + + + G Sbjct: 430 NTAAALDEKDAQFGRVFDEAPIGMSLSDLDYQFIQVNRAFYEMLEYTKSELMALNG---- 485 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L D KP + + + + +++L +Q E + Sbjct: 486 -LAITHPEDLEKAKPYIKQVIQGEIDSFKLEIRYL-KKNQDTLWGNLTMMAMRDQAGEIL 543 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + + + + +I+E ++ I + +G + N A + FG Sbjct: 544 CILSMVEDITERKQAEEAVRHSEERFRAIIEDQTELICRLKLDGTLTFVNDAYCRYFGKD 603 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +++ + F + ++ + + T E L + E + Sbjct: 604 RSELVGQVFLPKMPPEDEDIVTRNFRSLSVENPINTYEHRVLLDSGEIRWQQWSDRAMFD 663 Query: 549 PFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 DI+E KQ + + A ++ +S F++ VSHE RTPLT I Sbjct: 664 EHGHFIECQAVGRDITELKQAEADIRKALAKEKELGQLRSGFVSLVSHEFRTPLTTIQSS 723 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++++ L + +++ + I + + +++D+L I K ++GK+ EP+ L Sbjct: 724 AQMLQR-YEQKLSAEKKLKHHDKIQHAVLRMTQLLDDVLTIGKADAGKLKFEPEPMDLVA 782 Query: 667 AVSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + +++ ++ + + +L D R + + N+L NAI ++P GG I Sbjct: 783 LCQDILENIKINLGFNHNLIFLSH--GSCQDVLIDERLLSHVVNNLLLNAIKYSPEGGTI 840 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S+ +++V+D G+G+ + + + F + S GTGLGL + K + Sbjct: 841 KFELNCNSS-TAVIQVQDQGIGIPKKDQYQLFESFERA--SNVGSIPGTGLGLAIVKKCL 897 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 D + G + S GT + PL+ ++P++ Sbjct: 898 DLHEGTIAVNSEVGVGTTFTVTLPLHFATNPNN 930 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 47/420 (11%), Positives = 111/420 (26%), Gaps = 46/420 (10%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 SE F F DA L+ I+++ K G ++G ++ + D Sbjct: 297 SEKRFRLAVDNFPGTFM-IYDAQRRLQFINQQGVKLTGVSDSPLLGHTDEEIYPPVFKDI 355 Query: 130 NNH-IGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + T P G + + +P+ + ++ GI+ Sbjct: 356 YVKLLQKAVETRTPQVEELTLTLPEVGE---LTVLATYIPLLNEQGNI--YQVIGIIQDT 410 Query: 188 RVDNDPR---------------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-- 230 A D +F + + S+ Y Sbjct: 411 TQRKQAEVELRQAYQQLRLNTAAALDEKDAQFGRVFDEAPIGMSLSDLDYQFIQVNRAFY 470 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL---TSEESSLPEQEDFHTINLNQYTKKQ 287 K+++ +L + L+ K + E S + + N + Sbjct: 471 EMLEYTKSELMALNGLAITHPEDLEKAKPYIKQVIQGEIDSFKLEIRYLKKNQDTLWGNL 530 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC--PIPFFVYS---HGNLF 342 +++ + E LS + +E + E + G L Sbjct: 531 TMMAMRDQAGEILCILSMVEDITERKQAEEAVRHSEERFRAIIEDQTELICRLKLDGTLT 590 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + N ++ + + PK+ + +RS + H Sbjct: 591 FVNDAYCRYFGKDRSELVGQVFL-------PKMPPEDEDIVTRNFRSLSVENPINTYEHR 643 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KMEIEVM--QLCS 456 + + + ++ + + + + + + + E QL S Sbjct: 644 VLLDSGEIRWQQWSDRAMFDEHGHFIECQAVGRDITELKQAEADIRKALAKEKELGQLRS 703 Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 19/285 (6%), Positives = 78/285 (27%), Gaps = 13/285 (4%) Query: 46 HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105 + + + + + + D++ VFD P + D +++ + Sbjct: 416 AEVELRQAYQQLRLNTAAALDEKDAQFGRVFDEAPIGMSL---SDLDYQFIQVNRAFYEM 472 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDL 163 + +++ + ++ ++ I +++ + +++ + L+ + + Sbjct: 473 LEYTKSELMALNGLAITHPEDLEKAKPYIKQVIQGEIDSFKLEIRYLKKNQDTLWGNLTM 532 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + + + E +V + +++F + E + K Sbjct: 533 --MAMRDQAGEI--LCILSMVEDITERKQAEEAVRHSEERFRAIIEDQTELICRLKLDGT 588 Query: 224 IFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + R + +D+ + T + L+ E + + Sbjct: 589 LTFVNDAYCRYFGKDRSELVGQVFLPKMPPEDEDIVTRNFRSLSVENPINTYEHRVLLDS 648 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 ++ + + E + + + Sbjct: 649 GEIRWQQWSDRAMFDEHGHFIECQAVGRDITELKQAEADIRKALA 693 Score = 62.4 bits (150), Expect = 4e-07, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 5/135 (3%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + E E L + + D + + G N K+ G+ + Sbjct: 1 MNTTQSHIKSTETMAEAESA-LKILFSLSLDLLCTFGQNGYFQQLNPIWEKVLGWTCSQL 59 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 +P+ ++ V + L + + +E K+ L L I + Sbjct: 60 RSRPWIEWIYPEDREVTLNALRDC---GQGKLVEYRNRIYHKDGSLRWLAWRISQDE-QG 115 Query: 553 CYSLTMHDISEWKQE 567 + DI+ K+ Sbjct: 116 LFYAVAKDITSIKEL 130 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 109/529 (20%), Positives = 213/529 (40%), Gaps = 58/529 (10%) Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 V+ P + S +L + N + + L + SV+++ L P+ + Sbjct: 522 YHNLVEVYPEAILIVSQDDLVFVNSAAVRLLRVNSVEELLGKKFLE--FVHPQHREEIEE 579 Query: 382 --------------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 V ++D I + + + + + + Q Sbjct: 580 NLKSLKTSQTLIPLHEVKFLQADGQIIYVEMVGAFLNYQNQPAAQIVARDITRRKQTELA 639 Query: 428 MPQNGIEPEDV--------------------DTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + E E + + + + I + +IL D I Sbjct: 640 LHKTKDELELRVNERTAELINVNRQLQSQLDEQKRTQDALRISENRFEAILSIADDAIIS 699 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524 I+ I N+ K+FGY ++L + + L +++ + + R Sbjct: 700 IDSNQQITLFNQGAEKIFGYSAGEVLGQKLDLLLPTRFAQEHRNHVYKFGKSSAHARRMG 759 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + G K+ I KL S Y++ + DI+E KQ + Sbjct: 760 ERQEIFGCRKDGSEFPAEASISKLDLGQESVYTVILRDITERKQVE-------------- 805 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +F++ VSHE+RTPLT+I G ++ + + + S ++ ++N Sbjct: 806 KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSS-TSEQGKRLLQIATDSTERLVRLIN 864 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LDI +IESGK+ + E L + ++ AI+++Q A++ + + +N+ ++ AD Sbjct: 865 DILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSIHNSNSSSIQLWADP 924 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + Q N+ SNAI F+ G + + T + +V++ V+DTG G+ +LE + F Sbjct: 925 DRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKD-QVLVTVQDTGRGIPEDKLESIFERFQ 983 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ +S +GTGLGL + K++V + GK ++ S +G+ P+ Sbjct: 984 QVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFTLPI 1032 >gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1282 Score = 392 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 131/803 (16%), Positives = 251/803 (31%), Gaps = 101/803 (12%) Query: 91 AHGYLKEISEE--LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-----NTW 143 S + A ++ +S I LL ++ Sbjct: 223 PEQRWLY-SPATIHDDYLVEDANAVLPDSPAPLSAT-----AKAINALLGKRKDVHQAMH 276 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF------------------------- 178 G+ + ++ LP++ SG+ Sbjct: 277 AGQPLTLAVVLDA--TTHTVSLLPLHDVTGRLSGYLLTYAPDPIIGKFQQEFYILLLYTI 334 Query: 179 ----RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 F ++ R + +R ++ + + + Sbjct: 335 AVCCLVFALLWRLRRRSQALDEERRNLSAMNNALAEGIYMQNRDGVITRVNPAACQLLGY 394 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES------SLPEQEDFHTINLNQYTKKQY 288 + + H+ ++ +E F N + Sbjct: 395 DADELLGQVAHDLFHRHGGNGAVPKEACPFFQTVHHSGQGYDGEEYFLCKNGELLLMEIA 454 Query: 289 FGTLQNNSKESFEYLSHRN------HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341 + + R+ + +E V++ P + G + Sbjct: 455 SRPIFQQGTVVGSVTAFRDITERKHTEAALLQSEENGRKLMTAVEQSPASVVITDSDGTI 514 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y N F+ + + + + + + K + + Sbjct: 515 EYVNQKFVQKSGFSVEEALGQNP----RILKSGMMPEEIYKELWQTITAGLEWKGELHNK 570 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 N+ I+ + D + ++ +++E+ Sbjct: 571 R---KDGTLYWEAVSISPIRNEQGTITHFIAIKEDITDRMRMEAELRENERIQRTLIESL 627 Query: 462 SDGIAIINREGIIL-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 G+AII+ E I+ N + LFG E I+ + FL + Sbjct: 628 PIGLAIIDGESRIIEEVNPLAASLFGADRETIIGRECHHFLCPQDELSCPIIDRGLA--- 684 Query: 521 LRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 L + L + + + + DI E KQ + + A + Sbjct: 685 ---VDNSDRLMLRADGTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQL 741 Query: 579 EK--------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 E S KS FLA +SHEIRTP+ AIIG + + R + + Sbjct: 742 EAAIVRAERLAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTR----DDDKRG 797 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + + S +L ++ND+LD SK+E+G++ L P S + + E ++ +Q+ A EK + Sbjct: 798 RFLDTVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGL 857 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------V 737 + A N+P ++ D ++QI LN++ NAI FT +G I + T + Sbjct: 858 RLAMDIAPNLPPCLVGDDLRLRQILLNLVGNAIKFTAAGS-ITLRITQEQPSSGGSEPLI 916 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ + F Q NS + GTGLGL + K +V GK ++ S Sbjct: 917 HFTVIDTGIGIAEEKRALIFNSFEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESR 976 Query: 798 PAKGTLIEII--FPLYDTSHPHD 818 +G+ ++ P+ D P D Sbjct: 977 INQGSAFHVLVPLPVCDQPLPAD 999 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 37/359 (10%), Positives = 99/359 (27%), Gaps = 10/359 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D+ G ++ ++++ + G + +G + + + + + W G+ Sbjct: 508 TDSDGTIEYVNQKFVQKSGFSVEEALGQNPRILKSGMMPEEIYKELWQTITAGLEWKGEL 567 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT + + ++ PI + + F I A + ++ L Sbjct: 568 HNKRKDGTLYWEAVSIS--PIRNEQGTITHF--IAIKEDITDRMRMEAELRENERIQRTL 623 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E ++ + I + +P L ++ + + H P++ Sbjct: 624 IESLPIGLAIIDGESRIIEEVNPLAASLFGADRETIIGRECHHFLCPQDELSCPIIDRGL 683 Query: 267 SSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + T++ K ++ R E Sbjct: 684 AVDNSDRLMLRADGTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQLEA 743 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + + + A FL ++ + G++ L + D Sbjct: 744 AIVRAER--LAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTRDDDKRGRFLD 801 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + S + + + L ++ PF E M + + R+ Sbjct: 802 TVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRLA 860 >gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1101 Score = 392 bits (1008), Expect = e-106, Method: Composition-based stats. Identities = 110/515 (21%), Positives = 196/515 (38%), Gaps = 29/515 (5%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366 ++ + E V+K P + G + Y N SF L Y + + Sbjct: 329 QERRRLRLNDRIRVLSEVVEKSPAAVMITDPKGAIIYINKSFETLFGYSAEQVLGNTP-- 386 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + L+++ + + + T + I N E Sbjct: 387 --RMLKSGLTEDFVYAELWQTITAGGVWSGEMVNRTAC---GQLCWTSCIVSGLINDQGE 441 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 +E + + + + + +L + +E + I I N+EG I N + G Sbjct: 442 MGYYVAVESDTTEAKQRELDL----HKLSTAVEQSPIAIVITNQEGAIEYVNPHFCNISG 497 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y +++L + + + L ++ + K I Sbjct: 498 YSAQEVLGENPRLLKSGEMAAAYYQELWSTITRG--EVWRGEFRNRRKNGSTYWESATIA 555 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + Y DIS K + +L + ++ S KSDFLA +SHEIRTP+ Sbjct: 556 PVRDINGQTSHYIALKEDISLRKSYEEQLIEERHKYQEASRVKSDFLATISHEIRTPMNT 615 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G + +K ++ I + + +L I+ND+LD S+ E+G + L P+ Sbjct: 616 ILGMTGELKESHLSG----EQLKLLQSIQAAASNLLQIINDVLDFSRFEAGSIELFIAPL 671 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L + VSEA +V ++ I T + +P I D + ++Q+ +N+L NA FT Sbjct: 672 LLRQVVSEAEQIVAFQIRKQGIRFLTYMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQ 731 Query: 722 GGQIII------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++ + +E+ RV DTG+G++ +K F Q S + GTG Sbjct: 732 GTIALLVHLQPGKAEASDQQELCFRVVDTGIGISEAHRDKLFHAFSQADGSITRQYGGTG 791 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL ++K +V G S G+ PL Sbjct: 792 LGLSISKHLVGMMGGTIGFESCQGVGSTFWFTLPL 826 Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 71/235 (30%), Gaps = 11/235 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147 D G + I++ G A +++G + L D + + W G+ Sbjct: 357 TDPKGAIIYINKSFETLFGYSAEQVLGNTPRMLKSGLTEDFVYAELWQTITAGGVWSGEM 416 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + ++ L + E G+ V V + + L K + + Sbjct: 417 VNRTACGQLCWTSCIVSGL--INDQGE-MGY----YVAVESDTTEAKQRELDLHKLSTAV 469 Query: 208 HEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + +E + + +V ++ L ++ Sbjct: 470 EQSPIAIVITNQEGAIEYVNPHFCNISGYSAQEVLGENPRLLKSGEMAAAYYQELWSTIT 529 Query: 267 SSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + +F N + Y + +++ + ++ Y++ + SL ++E Sbjct: 530 RGEVWRGEFRNRRKNGSTYWESATIAPVRDINGQTSHYIALKEDISLRKSYEEQL 584 >gi|168698023|ref|ZP_02730300.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 969 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 120/764 (15%), Positives = 234/764 (30%), Gaps = 69/764 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + +G +++G D + + D + L R G+ Sbjct: 99 DRDGRYLLFNAAAARLVGKTVAEVLGR---DDTALFDPDGARRVM-ALDRCIMESGRPLT 154 Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 T+ V A P +G GI + +F + Sbjct: 155 SEEVLTSAGVTRTYLATKAPYRDETGAVAGV--IGISRDVTDHKRDEESLRDSVWRFRSV 212 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLL 262 E + L + H DD + L Sbjct: 213 FEHAATGIGITDPDGRFLQCNPAYCATLGLTEAELREADLAQLIHPDDRAENMALLRQLS 272 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN-- 320 E + F + ++ L++ + ++ + + Sbjct: 273 AGEIPGYEIENRFLHASGEPRWVHKWVTALRDAEGRTKCLMALVTDVTERRRSEAELRAS 332 Query: 321 ---------LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 L +D P+ + G + NP+ + D Sbjct: 333 EERSRKGAALLSAVMDALPVSVIIADPVGRIVRTNPASERIWGRAPTADSVDGYREYVGY 392 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + M A + + + + E + Sbjct: 393 WPDTGRRIEPHEWPMSRAVLNGLTATAVGVTIERAGDRTRRRLELSAAPVIGDAGERLGG 452 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + L S+L+ D + I+ G + S NRA ++FG+ Sbjct: 453 VVACLDVTERVAAE-------TLLTSVLDNVLDAVIGIDEGGTVRSFNRAAERIFGFTAA 505 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLS--LRIIIK 546 ++L + + + S + YL L+ + + + + K + L + Sbjct: 506 EVLGRNVNTLMPEPDRSRHDGYLANYLTTGSAKVIGAGREVVARRKNGETFPADLAVSAF 565 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L ++ + DISE +Q +++ HA+K+ ++H+ LT I G+ Sbjct: 566 WLDDHRYFTGVVRDISERRQLEDQYRHAQKM-----EAVGRLAGGIAHDFNNLLTVINGY 620 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ ++ P G+P + E + +G + LL S+ K L ++L++ Sbjct: 621 SKIVLDEM--PDGDP-HRESVGMVRDAGKRAAVLTRQLLAFSR----KQVLQPTTLNLND 673 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + ++ + + A + AD V+Q+ +N+ NA P+GG++ Sbjct: 674 LLDGMSRML-AQLIGADVDLTVRGAPEPWPVRADAGQVEQVVMNLAVNARDAMPTGGRLT 732 Query: 727 IST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I T E V L V DTG GM + +PF Sbjct: 733 IETGNVTLDTGYTAAHPEARPGEYVRLAVTDTGCGMDVVTKARIFEPFFTTKGEN----- 787 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GTGLGL +V + G ++S GT ++ P D S P Sbjct: 788 GTGLGLATVFGIVKQSGGHVEVYSELGVGTTFKVYLP-RDRSDP 830 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 20/302 (6%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 +L D FV G N + L + + Sbjct: 70 ARREFRVAAHAAHLLRAVADGTTDAMFVKDRDGRYLLFNAAAARLVGKTVAEVLGRDD-- 127 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + L D + A + + L R + + ++ Sbjct: 128 TALFD-----PDGARRVMALDRCIMESGRPLTSEEVLTSAGVTRTYLATKA-PYRDETGA 181 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 GI + D + ++ + V + S+ E + GI I + +G L N A G Sbjct: 182 VAGVIGISRDVTDHKRDEESLRDSVWRFRSVFEHAATGIGITDPDGRFLQCNPAYCATLG 241 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 ++ + + + L ++ + ++ E + + + Sbjct: 242 LTEAELREADLAQLIHPDDRAENMALLRQLSAGEIPG-YEIENRFLHASGEPRWVHKWVT 300 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 L + + D++E ++ + +L +++ + K ++ S + + P++ Sbjct: 301 ALRDAEGRTKCLMALVTDVTERRRSEAELRASEERSRKGAALLSAVMDAL------PVSV 354 Query: 603 II 604 II Sbjct: 355 II 356 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 33/373 (8%), Positives = 82/373 (21%), Gaps = 36/373 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + + T+G ++ L + N + L + Sbjct: 223 TDPDGRFLQCNPAYCATLGLTEAELREADLAQLIHPDDRAENMALLRQLSAGEIPGYEIE 282 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + + +V A + +++ Sbjct: 283 NRFLHASGEPRWVHKWVTALRDAEGRTKCLM--ALVTDVTERRRSEAELRASEERSRKGA 340 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + I ++ A D + + Sbjct: 341 ALLSAVMDALPVSVIIADPVGRIVRTNPASERIWGRAPTADSVDGYREYVGYWPDTGRRI 400 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----------- 317 P + LN T T++ + L P + + Sbjct: 401 EPHEWPMSRAVLNGLTATAVGVTIERAGDRTRRRLELSAAPVIGDAGERLGGVVACLDVT 460 Query: 318 ----GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E L +D + G + N + + + + + + ++TL+ Sbjct: 461 ERVAAETLLTSVLDNVLDAVIGIDEGGTVRSFNRAAERIFGFTAAEVLGRN--VNTLMPE 518 Query: 373 PKLSDNN----------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 P S ++ A + V+ R + A + + Sbjct: 519 PDRSRHDGYLANYLTTGSAKVIGAGREVVARRKNGETFPADLAVSAFWLDDHRYFTGVVR 578 Query: 417 PFEKANQFPENMP 429 + Q + Sbjct: 579 DISERRQLEDQYR 591 >gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18] Length = 933 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 112/637 (17%), Positives = 225/637 (35%), Gaps = 36/637 (5%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSL 243 +R +++ I S P + Sbjct: 59 RRQSEGALRRSEEQLRISQRIAHIGSWDWDLASGRLDCSEELCRIFAIPFDGAPCSYDAF 118 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 ++ + + S + + + +N+S + Sbjct: 119 LSLLPEREREAVAAAVESALTGDDSFAVEYTLLCPGGGERVLLEVGEVFRNDSGTPLRVV 178 Query: 304 SHRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDD 359 S + + + E ++ P F+ + N SF + D Sbjct: 179 SVVHDITERKEAESALFFEKRYRGLIENLPQRIFLKDCNLVYLSCNSSFARELGLEPGDV 238 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 L P ++ + + + ++ Sbjct: 239 FGKTDY--DLFAPPLAKKRQEEDEKVMAAGT--------AVERDEQRERDGAWVSKALIP 288 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + G+ + + + +++ + + E + GI I I++ NR Sbjct: 289 LKDDNGWVYALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIALSDILIRINR 348 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + GY E++L + + L+ +++ ++ K+ L+ Sbjct: 349 RFCDILGYTQEELLGSTLEQTIHPEDRAAEQGQLSRLVNREID-NYSIEIRQIRKDGSLV 407 Query: 540 SLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + + D++ K+E +L + + + S KS+FLA + HE Sbjct: 408 WVNLTKSLVCGRKGEPKYLVGVIEDVTA-KREALELRRERDLVQAASRAKSEFLANMGHE 466 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ A++G S + P + Y I + +L+I+ND+LD SKIE+GK+ Sbjct: 467 IRTPMNAVMGLSRLALKSELVP----KQRGYLEKICSASRTLLNIINDILDFSKIEAGKV 522 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 L +SL E + + L A EK + + A +PR +L D + Q+ N++ N Sbjct: 523 ELEKTELSLHEVLGNISDMHHLKAQEKGLDFKMRLAPELPRKLLGDPLRLTQVLNNLIGN 582 Query: 715 AIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 A+ FT G +++++ E V V+DTG+G+T ++EK PF Q +S + Sbjct: 583 ALKFTRRG-EVVVAVKPVEQGEGMVAVNFCVQDTGIGITPEQMEKIFTPFTQADSSTTRQ 641 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL +++ +V+ G+ + S P KG+ Sbjct: 642 YGGTGLGLSISRQLVELMGGELQVQSVPEKGSSFSFT 678 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 48/420 (11%), Positives = 111/420 (26%), Gaps = 52/420 (12%) Query: 75 VFDPIPRTVRFTWNIDAHGYL------KEISEELPKTIGNYAFKMIGMRLCD------VS 122 VF +R W + G L IS+ + G C + Sbjct: 46 VFVGGLHALRLKWRRQSEGALRRSEEQLRISQRIAHIGSWDWDLASGRLDCSEELCRIFA 105 Query: 123 DILHIDP--NNHIGDLLKRQ----------------NTWYGKTTLWPIEGTNLYVPIDLA 164 P + LL + +++ + TL G V +++ Sbjct: 106 IPFDGAPCSYDAFLSLLPEREREAVAAAVESALTGDDSFAVEYTLLCPGG-GERVLLEV- 163 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 + + R +VH + + +K++ L E ++ Sbjct: 164 GEVFRNDSGTP--LRVVSVVHDITERKEAESA-LFFEKRYRGLIENLPQRIFLKDCNLVY 220 Query: 225 FSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 S S L + K ++ + E+++ + Sbjct: 221 LSCNSSFARELGLEPGDVFGKTDYDLFAPPLAKKRQEEDEKVMAAGTAVERDEQRERDGA 280 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VY 336 + L++++ + L + E E T ++ + + Sbjct: 281 --WVSKALIPLKDDNGWVYALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIA 338 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 L N F + Y + + STL D A + + +R Sbjct: 339 LSDILIRINRRFCDILGYTQEELLG-----STLEQTIHPEDRAAEQGQLSRLVNREIDNY 393 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S + I+ + + + + + E G+ + + ++ E + + Sbjct: 394 SIEIRQIRKDG-SLVWVNLTKSLVCGRKGEPKYLVGVIEDVTA-KREALELRRERDLVQA 451 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 30/279 (10%), Positives = 71/279 (25%), Gaps = 19/279 (6%) Query: 65 TNYLDSENTFVFDPIPR------TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 T ++E+ F+ R R + D + + + +G + G Sbjct: 185 TERKEAESALFFEKRYRGLIENLPQR-IFLKDCNLVYLSCNSSFARELGLEPGDVFGKTD 243 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 D+ + + T + +G + A +P+ N + Sbjct: 244 YDLFAPPLAKKRQEEDEKVMAAGTAVERDEQRERDG----AWVSKALIPLKDDNGWV--Y 297 Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---GHSSVEKEKYDIFSQQSPPPHLR 235 G++ K +++F + E H ++ I + Sbjct: 298 ALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIALSDILIRINRRFCDILGYT 357 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + + S E H +D + L+ E + + + + + Sbjct: 358 QEELLGSTLEQTIHPEDRAAEQGQLSRLVNREIDNYSIEIRQIRKDGSLVWVNLTKSLVC 417 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 E +YL + + V Sbjct: 418 GRKGE-PKYLVGVIEDVTAKREALELRRERDLVQAASRA 455 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 7/136 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGKTTLWPI 152 L I+ +G +++G L + L+ R+ + + + Sbjct: 343 LIRINRRFCDILGYTQEELLGSTLEQTIHPEDRAAEQGQLSRLVNREIDNYSIEIRQIRK 402 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G+ V ++L + R E G++ + L +R K Sbjct: 403 DGSL--VWVNLTKSLVCGRKGEPKYL--VGVIEDVTAKREALEL-RRERDLVQAASRAKS 457 Query: 213 GHSSVEKEKYDIFSQQ 228 + + Sbjct: 458 EFLANMGHEIRTPMNA 473 >gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 1013 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 120/638 (18%), Positives = 224/638 (35%), Gaps = 28/638 (4%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSL 243 + +++F + + ++ ++ H + + Sbjct: 82 DLAARTQAEESLRESEERFRSFMDHSPAIAWMKDDQGRHVYVNRVFEHRFQMVSGQWLGR 141 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHTINLNQY---TKKQYFGTLQNNSKE 298 T + ++V + + LP++ E + Q T K F Sbjct: 142 TNFELFPEEVARRFQTHDQMILADGLPKEFVEVAPDPDGTQRDWWTFKFPFRGPAGRRYV 201 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357 + + + A E + + + N + + + Sbjct: 202 GGVAIDITDRKRMEAALLVSEERLRLALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSRE 261 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + L+D L ++ + H I W + Sbjct: 262 TFVGTYEAYLALVDPQDLDR--LLQAIRQSIQANVEYQIE---HRILWPDGTVHWLACRG 316 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + G + + K+ QL +IL+ + I + +REG L Sbjct: 317 DVLRDADGTPVRMVGTVLDVTARKEMDLKLANSEAQLRAILDHSPALIFLKDREGRYLDV 376 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NR + F E IL K T +V +L E+ Sbjct: 377 NRQFERAFNLSREAILGKTDTELFSPKQAAVFQTNDRLVLEAKRPLRFEETADYHDGPRT 436 Query: 538 L----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 L + L DI++ K+ + L+ A+ A + + KS+FLA +S Sbjct: 437 SIVFKFPLLDRDRMLYAVGG---VATDITDRKRAEEALALARDQAMEAARLKSEFLATMS 493 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ +IG + ++ P E A + SG+ +L I+ND+LD SKIE+G Sbjct: 494 HEIRTPMNGVIGMTNLLLESALTP----EQRECAEVVRNSGDHLLMIINDILDFSKIEAG 549 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 ++ L + + + L+ A +K + + ++P + D ++Q+ +N+L Sbjct: 550 RLTLETIDFDFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQVLINLL 609 Query: 713 SNAIHFTPSGGQI-IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NAI FT G + ++ + V+LR V DTG+G++ K + F Q+ S Sbjct: 610 GNAIKFTDRGEVVLRMTVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQTFSQVDASTTR 669 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 R GTGLGL + K + + G+ + S P KG+ Sbjct: 670 RYGGTGLGLAICKRLTELMQGEIGMESAPGKGSRFWFT 707 Score = 89.7 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 30/379 (7%), Positives = 80/379 (21%), Gaps = 25/379 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 W D G ++ + + +G ++ H +L Sbjct: 112 WMKDDQGRHVYVNRVFEHRFQMVSGQWLGRTNFELFPEEVARRFQTHDQMILADGLPKEF 171 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +GT P + G G+ A +++ Sbjct: 172 VEVAPDPDGTQRDWWT--FKFPFRGPAGRR--YVG-GVAIDITDRKRMEAALLVSEERLR 226 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + R + L + Sbjct: 227 LALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSRETFVGTYEAYLALVDPQDLDRLLQAI 286 Query: 262 LTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-- 317 S ++++ + + + L++ + + D Sbjct: 287 RQSIQANVEYQIEHRILWPDGTVHWLACRGDVLRDADGTPVRMVGTVLDVTARKEMDLKL 346 Query: 318 --GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E +D P F+ G N F + + L + Sbjct: 347 ANSEAQLRAILDHSPALIFLKDREGRYLDVNRQFERAFNLSREAILGKTD--TELFSPKQ 404 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + ++L + + + P ++ + G+ Sbjct: 405 AAVFQTNDRLVLEAK----RPLRFEETADYHDGPRTSIVFKFPLLDRDRMLYAVG--GVA 458 Query: 435 PEDVDTRINKRKMEIEVMQ 453 + D + + + + Q Sbjct: 459 TDITDRKRAEEALALARDQ 477 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 39/325 (12%), Positives = 87/325 (26%), Gaps = 22/325 (6%) Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 T+ SL + +Q + + L E E Sbjct: 46 TAGLISLLVSSVVVLLISRMRALEQTLADTRRDR-----ALDLAARTQAEESLRESEERF 100 Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D P ++ G Y N F + S + L Sbjct: 101 RSFMDHSPAIAWMKDDQGRHVYVNRVFEHRFQMVSGQWLGRTNF--ELFPEEVARRFQTH 158 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 ++L + + TF G+ + D + Sbjct: 159 DQMILA----DGLPKEFVEVAPDPDGTQRDWWTFKF--PFRGPAGRRYVGGVAIDITDRK 212 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTV 499 + + + +L L A GI + + + VS +FG E + + + Sbjct: 213 RMEAALLVSEERLRLALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSRETFVGTYEAYLA 272 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 ++ + + + + ++ +E L + + L L + Sbjct: 273 LVDPQDLDRLLQAIRQSIQANVEYQIEHRILW--PDGTVHWLACRGDVLRDADGTPVRMV 330 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580 T+ D++ K+ KL++++ Sbjct: 331 GTVLDVTARKEMDLKLANSEAQLRA 355 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 25/259 (9%), Positives = 62/259 (23%), Gaps = 26/259 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI---LHIDPNNHIGDLLKRQNTWYGK 146 D G +++ + + ++G ++ N+ + +L+ + + Sbjct: 368 DREGRYLDVNRQFERAFNLSREAILGKTDTELFSPKQAAVFQTNDRL--VLEAKRPLRFE 425 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G + + P+ R+R + G+ + Sbjct: 426 ETADYHDGPRTSI---VFKFPLLDRDRML--YAVGGVATDITDRKRAEEALALARDQAME 480 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-E 265 +K + + P + + L E + E Sbjct: 481 AARLKSEFLATMSHEIR-------TPMNGVIGMTNLLLESALTPEQRECAEVVRNSGDHL 533 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + DF I + T + + + +G +L Sbjct: 534 LMIINDILDFSKIEAGRLTLETIDFDFRG-------MIDDTLDLIAEQARQKGLDLVGLI 586 Query: 326 VDKCPIPFFVYSHGNLFYA 344 P G L Sbjct: 587 DASVPSAV-RGDPGRLRQV 604 >gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver domain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 655 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 107/485 (22%), Positives = 203/485 (41%), Gaps = 22/485 (4%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + ++ N + + YK+ + + + + + A + + + Sbjct: 23 IVIDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGEREKSIAQLQAYGIWQG 82 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 L + ++ + I + + + + Sbjct: 83 EVF--------QHKKDGTKLKIRSAASFLKDKEGATIGVIAINRDITEENRIQENLAESE 134 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + E G+ +++ +G L N+ + + GY +++ +P F + S+ + Sbjct: 135 ERFRMSFENAGIGVCLLDLDGKFLRVNKKIQSMLGYSEVELIGRPSKEFAYKEDQSIFHQ 194 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567 Y L + +K ++L + I + + + + +DI++ K Sbjct: 195 YRESALKGKDVDVV-YEKRYVSKTNQILWIEISNSLVKDRNGSPLYFVVHFNDITDRKNA 253 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AKK AE+ + KSDF+A +SHEIRTPL +IGF+E++ + EY Sbjct: 254 EIHLIQAKKEAERANQAKSDFVANMSHEIRTPLNGVIGFNELLMTTNL----DSDQKEYV 309 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 S + +L I+ND+LDISKIE+GK+ L+ +L V +++ ++Q A EK I + Sbjct: 310 KNAISSAHGLLGIINDILDISKIEAGKLVLNETISNLKHIVKDSLGVLQWRAKEKNIQLD 369 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI--LRVRD 743 +P I+ D ++QI +N+L NA+ FT G I I + NE++ ++D Sbjct: 370 FEVNPKLPEWIVVDATRLRQILINLLGNAVKFTEKGSVILKIDSEIAENEKIKLNFSIKD 429 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + F Q ++ R GTGLGL + K+++D G+ S KGT Sbjct: 430 TGIGIPESHKPNLFQSFWQGESNSTRRFGGTGLGLRITKSLLDLMGGQIDFSSEEGKGTE 489 Query: 804 IEIIF 808 Sbjct: 490 FRFSI 494 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL+ D + +I+ + I S N A +++GY E+ L L+ I Sbjct: 14 ILQYFYDAVIVIDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGERE--KSI 71 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572 L + K+ L +R L DI+E + + L+ Sbjct: 72 AQLQAYGIWQGEVFQHKKDGTKLKIRSAASFLKDKEGATIGVIAINRDITEENRIQENLA 131 Query: 573 HAKKIAEKE 581 +++ Sbjct: 132 ESEERFRMS 140 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 5/141 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147 ID ++ + + G A + +G DV + + L+ W G+ Sbjct: 25 IDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGEREKSIAQLQAYGIWQGEV 84 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT L + AA + + G I +N + +++F Sbjct: 85 FQHKKDGTKLKIR--SAASFLKDKEGATIGV--IAINRDITEENRIQENLAESEERFRMS 140 Query: 208 HEIKKGHSSVEKEKYDIFSQQ 228 E + Sbjct: 141 FENAGIGVCLLDLDGKFLRVN 161 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 45/138 (32%), Gaps = 4/138 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKT 147 +D G +++++ +G ++IG + + + + LK ++ Sbjct: 151 LDLDGKFLRVNKKIQSMLGYSEVELIGRPSKEFAYKEDQSIFHQYRESALKGKDVDVVYE 210 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + TN + I+++ + RN F + + + K+ Sbjct: 211 KRY-VSKTNQILWIEISNSLVKDRNGSPLYF--VVHFNDITDRKNAEIHLIQAKKEAERA 267 Query: 208 HEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 268 NQAKSDFVANMSHEIRTP 285 >gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1093 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 109/635 (17%), Positives = 216/635 (34%), Gaps = 28/635 (4%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + + + + + F R + L + Sbjct: 320 SEERHRELVQSAASVILRLDHQGRVVFCNAFGLEFFGFTLEEMIGRDIGLLIDLPDVPGT 379 Query: 250 KDDVLKTEK----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 +D + + ES+ N L+ + E L Sbjct: 380 EDSADAASWPQALTAIAQAPESAAALTRQHRRKNGELAWIAWSLRGLRAATGGVSEILCI 439 Query: 306 RNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360 N + +E + + + + Y +P +L + Y + Sbjct: 440 GNDITERKRIEEALRASEARYTLVARGANDGIWDWDLRTNIVYYSPRYLEILGYTPDEV- 498 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L D + +D A + ++ + Sbjct: 499 --QSLLDEWTKRIHPDDAENVIRANKRCADGEVDNF-AVEYRMRHKDGAYRWILGRGASL 555 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNR 479 ++ + G + + ++ + QL I T GI R+G I+ N Sbjct: 556 KDERGVVIRMAGTHTDVTRRKRDEEALRESQDQLAKIFRFTPVGIAITTRRDGRIVDVNE 615 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++FG+ +++ + L E+ K K + Sbjct: 616 TGARMFGHVKSEVIGRTAHEVGLWRRTEEREALLAEMARAG--SIFGKELDLRHKNGSTV 673 Query: 540 SLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 ++ C + DI+E K + L +K+ AE + KS+FL+ +SHEIR Sbjct: 674 TVLYSAVANHAYGEPCILSVLVDITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIR 733 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ I+G +V+ I+ +G +L ++ND+LD+S+IE+G M + Sbjct: 734 TPMNTILGMVDVLAGTSLTS----DQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVI 789 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 + + E ++ +++ A+ K + +R ++P + ++QI +N+L NAI Sbjct: 790 EEKSCDIVELTTQLADMMRPDADRKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAI 849 Query: 717 HFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G +++ T + L VRDTG+G+ + F QI S + Sbjct: 850 KFTQQG-HVVLEVASTPSLTDGPRLRLAVRDTGIGIPADKQAVIFDRFTQINASANRQFG 908 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 G GLGL + K + + G+ + S P +G+ + Sbjct: 909 GVGLGLAICKKLAELMGGRIAVESAPGQGSTFTLS 943 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 28/391 (7%), Positives = 84/391 (21%), Gaps = 41/391 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-------------DILHIDPNNHIG 134 +D G + + + G +MIG + + I Sbjct: 337 RLDHQGRVVFCNAFGLEFFGFTLEEMIGRDIGLLIDLPDVPGTEDSADAASWPQALTAIA 396 Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + + G ++ L L + S I + Sbjct: 397 QAPESAAALTRQ--HRRKNGELAWIAWSLRGL--RAATGGVS--EILCIGNDITERKRIE 450 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEY-----Y 247 + + +++ + + +I + ++V SL + + Sbjct: 451 EALRASEARYTLVARGANDGIWDWDLRTNIVYYSPRYLEILGYTPDEVQSLLDEWTKRIH 510 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH-- 305 + + E + + + +L++ Sbjct: 511 PDDAENVIRANKRCADGEVDNFAVEYRMRHKDGAYRWILGRGASLKDERGVVIRMAGTHT 570 Query: 306 --RNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE 361 E ++ + P+ + G + N + + + + I Sbjct: 571 DVTRRKRDEEALRESQDQLAKIFRFTPVGIAITTRRDGRIVDVNETGARMFGHVKSEVIG 630 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L + + + + L N + A Sbjct: 631 RTAHEVGLWRRTEEREALLAEMARA----GSIFGKELDLR--HKNGSTVTVLYSAVANHA 684 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 P + + + + ++ + Sbjct: 685 YGEPCILSVLV---DITERKAMEQALRRSKE 712 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/255 (9%), Positives = 56/255 (21%), Gaps = 13/255 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W+ D + S + +G ++ + + Sbjct: 471 IWDWDLRTNIVYYSPRYLEILGYTPDEVQSLLDEWTKRIHPDDAENVIRANKRCADGEVD 530 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 Y I + R G + + Sbjct: 531 NFAVEYRMRHKDGAYRWILGRGASLKDERGVVI--RMAGTHTDVTRRKRDEEALRESQDQ 588 Query: 204 FSHLHEIKK-GHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + G + + I +K++V T + E+ Sbjct: 589 LAKIFRFTPVGIAITTRRDGRIVDVNETGARMFGHVKSEVIGRTAHEVGL-WRRTEEREA 647 Query: 261 LLTSEESS---LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 LL + ++ D N + T + + N++ LS + ++ Sbjct: 648 LLAEMARAGSIFGKELDLRHKNGS--TVTVLYSAVANHAYGEPCILSVLVDITERKAMEQ 705 Query: 318 GENLTPETVDKCPIP 332 + E + Sbjct: 706 ALRRSKEAAESANRA 720 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 34/291 (11%), Positives = 77/291 (26%), Gaps = 17/291 (5%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F P+ + G + +++E + G+ ++IG +V + + Sbjct: 593 FRFTPVGIAI----TTRRDGRIVDVNETGARMFGHVKSEVIGRTAHEVGLWRRTEEREAL 648 Query: 134 GDLLKRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + R + +GK L G+ + V A Y S ++ Sbjct: 649 LAEMARAGSIFGKELDLRHKNGSTVTVLYSAVANHAYGEPCILS------VLVDITERKA 702 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 +R + + K S + + + + +A K Sbjct: 703 MEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGTSLTSDQTHAVKSI 762 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRN 307 L L ++ L + E + Q ++ ++ L Sbjct: 763 ELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPDADRKGLELRLEI 822 Query: 308 HPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 L + + + + G++ S LT + Sbjct: 823 RGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQGHVVLEVASTPSLTDGPRL 873 >gi|298248600|ref|ZP_06972405.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551259|gb|EFH85125.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1036 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 109/771 (14%), Positives = 243/771 (31%), Gaps = 46/771 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD ++ +S + + W G + ++ G Sbjct: 291 TDIEEQKRIEQQLKESRESLRVLAEAVP-QLVWVARPDGQFEYTNQRWDDYTGLTHEPGQ 349 Query: 115 GMRL--CDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 R + N L + + + T Y ALP+ Sbjct: 350 SDRWAHRQCIHPDDREGNRAHCQHALATGDMFEHEH-RIRNGQTGEYRWFLTRALPVKDD 408 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + + FG K ++ + L E + + Sbjct: 409 TGQV--LKWFGTCTDIEEQKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHV 466 Query: 232 P--HLRMKNKVSSLTE---YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 + + + ++ + +L + E E Sbjct: 467 STYLGAFPDSFLGDEWRQFVHPDDYERVQAARRHVLETGEPYEGEYRLKERQTGRYRWFL 526 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNL 341 +++ + + + ++ + E + P +V G Sbjct: 527 ARLMPVRDETGQIVKRFGTATDIEEQKQAEQQLKESEENWRVLAEMVPQLVWVRRPDGPH 586 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y N + T ++ + P ++N + RL Sbjct: 587 EYTNQRWCDYTGLT-LEHMRSDQWAHLQFVHPDDQESNRVH-WQHALDTGAMFEHEVRLR 644 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 Q ++ + + G + + + + + + ++ +++ ++ Sbjct: 645 NAQT--GKYRWFLARAMPVRDEAGQIIKWFGTDTDIEEQKRIEAALRQSQERVNALMNSS 702 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSL 519 GI I+ I+ N A + GY ED+ + E+++ Sbjct: 703 IIGI-TISEGEQIVDANDAFLHMTGYTREDLHEGRINWMHMTPPECLARTFEAHQELIAQ 761 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIA 578 EK + + L + + + LP + D S K+ + + Sbjct: 762 QSTSPYEKEYVCQ--DGSRLPVLMGLVALPHQPHQTIGFVLDNSARKELEQR-------- 811 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K DF+ SHE+R PL A+ ++ + +R + + + ++ + Sbjct: 812 ------KDDFINMASHELRNPLAALKMQTQ-LVRKRLEKQSHHKAATALSKVEGPIKQLE 864 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ +LLD+S+I++GK+ EPV LD + E + RIL+ + ++ + Sbjct: 865 RLIAELLDVSRIQAGKLEYQQEPVDLDALLQEVTETLPQIYPSHRILVDGAVHTSL---I 921 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + Q+ N+L NAI ++P + + + + + V +RVRD G+G+ + +K + Sbjct: 922 GDRDRLGQVFANLLCNAIKYSPGAETVEMDLSASDD-MVTIRVRDHGLGIPREQRDKIFE 980 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F ++ +Q G G+GL + +V + G + S KG+ + P Sbjct: 981 RFYRVAGPRQKAIPGLGMGLYIVSEIVKHHGGSITVDSEVGKGSTFTVTLP 1031 Score = 180 bits (458), Expect = 7e-43, Method: Composition-based stats. Identities = 59/585 (10%), Positives = 140/585 (23%), Gaps = 36/585 (6%) Query: 24 DLSKKKIDNGFETEKSKKENPCHDSFE--QSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81 D + K ID F ++ F Q ++ + +SE F Sbjct: 129 DYTLKPIDRDFFVAGVRRALQTRQLFRLVQEKQQAIEEQKRTEQQLKESEENFRVLAEMV 188 Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLK 138 +F W + G + ++ IG ++ L V H L Sbjct: 189 P-QFVWVTRSDGRVDYCNQRRRDYIGLTLEQLQSDCCAYLQAVHPEDWESSRAHWQHALD 247 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + + T Y ALP+ + + FG K Sbjct: 248 TGDIYEHEQ-RMRQGTTGEYRWFLARALPVRDDTGQII--KWFGTDTDIEEQKRIEQQLK 304 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKD 251 + L E V + ++ + + Sbjct: 305 ESRESLRVLAEAVPQLVWVARPDGQFEYTNQRWDDYTGLTHEPGQSDRWAHRQCIHPDDR 364 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + L + + E + +++++ + ++ Sbjct: 365 EGNRAHCQHALATGDMFEHEHRIRNGQTGEYRWFLTRALPVKDDTGQVLKWFGTCTDIEE 424 Query: 312 SAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 ++ + E + P + G L YAN + G Sbjct: 425 QKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHVSTYLGAFPDSFL---GDE 481 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 P D+ T + ++ + Sbjct: 482 WRQFVHP---DDYERVQAARRHVLETGEPYEGEYRLKERQTGRYRWFLARLMPVRDETGQ 538 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + G + + + +++++ + E + + +G TN+ G Sbjct: 539 IVKRFGTATDIEEQKQAEQQLKESEENWRVLAEMVPQLVWVRRPDGPHEYTNQRWCDYTG 598 Query: 487 YPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRI 543 +E + + + + + L E + K Sbjct: 599 LTLEHMRSDQWAHLQFVHPDDQESNRVHWQHALDTGA--MFEHEVRLRNAQTGKYRWFLA 656 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + T DI E K+ + L +++ + Sbjct: 657 RAMPVRDEAGQIIKWFGTDTDIEEQKRIEAALRQSQERVNALMNS 701 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 13/169 (7%), Positives = 43/169 (25%), Gaps = 9/169 (5%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + +++++ + E + + +G + N+ G Sbjct: 155 RLVQEKQQAIEEQKRTEQQLKESEENFRVLAEMVPQFVWVTRSDGRVDYCNQRRRDYIGL 214 Query: 488 PVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRII 544 +E + + + L E + Sbjct: 215 TLEQLQSDCCAYLQAVHPEDWESSRAHWQHALDTGD--IYEHEQRMRQGTTGEYRWFLAR 272 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + T DI E K+ + +L +++ + + Sbjct: 273 ALPVRDDTGQIIKWFGTDTDIEEQKRIEQQLKESRESLRVLAEAVPQLV 321 >gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 954 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 116/665 (17%), Positives = 242/665 (36%), Gaps = 57/665 (8%) Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-------- 243 RA +R + + + + +V + I + N + Sbjct: 5 QRRAKHRRDHRLDPSIINVLPANIAVLDAQGTILAVNESWERFAAANGFTGESYGVGLNY 64 Query: 244 ----TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS--K 297 D + + E + + + + +Q + Sbjct: 65 LRICDAAGTQPDAQHVAQGIRHILDGTIRAFSYEYESSSSTLRRWFRVIVTPMQGSRSYG 124 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKS 356 +++ + A + E VD + G + NP+ + Y S Sbjct: 125 AVVMHINVSDLKQAEAAMHQSEVRLRAIVDTAVDGIVVINERGIIESVNPAVTRMFGYTS 184 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + L L+ P ++++ L + I + ++ + ++ Sbjct: 185 NQLLGQNVKL--LMPDPYHTEHDRYLTNYLQSGQKKVIGIGREVLGLRNDG---VSFPIE 239 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 GI + + + Q ++E+ +G+ +I+ G I Sbjct: 240 LAVSEMLVDGARKFTGIVRDISLRKQAEA-------QFRQVVESAPNGMLMIDSLGNITL 292 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK 534 N+ V +FGY E++L +P + + + + S + + + G K Sbjct: 293 VNKQVETMFGYSREEMLGRPVEMLIPERFRPNHPAHRIGYFSAPSSRAMGAGRELFGLHK 352 Query: 535 EEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN--------------KLSHAKKIA 578 + + + + + + ++ DI+ K+ ++ ++S A+ A Sbjct: 353 SGQEFPVELGLNPIDTPNGKLALASIVDITMRKRTESALSKAAQDLEWKNWEISEARDQA 412 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K K+DFLA +SHEIRTP+ ++G + ++ + +Y + S +L Sbjct: 413 VKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDTALST----EQRDYLQTLRHSSESLL 468 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 I+ND+LD SKIE+GK + P L + + + ++ + ++ + + PR + Sbjct: 469 RIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQTPRTV 528 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYEL 753 + D ++Q+ N+L NAI FT G +++I + + V DTG+G++ Sbjct: 529 IGDPGRIRQVLTNLLGNAIKFTEQG-EVLIQVLPLDEDPTFVMLRFEVIDTGIGLSPEAQ 587 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811 K + F Q +S + GTGLGL + K +V+ G+ + S P GT + F L Sbjct: 588 AKMFQAFTQADSSTARKYGGTGLGLTICKRLVELMGGEIGLQSMPGLGTRIWFTVRFALQ 647 Query: 812 DTSHP 816 + P Sbjct: 648 ADAAP 652 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 40/387 (10%), Positives = 103/387 (26%), Gaps = 38/387 (9%) Query: 89 IDAHGYLKEIS---EELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNH-----IGDLLKR 139 +DA G + ++ E G +G+ + D P+ I +L Sbjct: 31 LDAQGTILAVNESWERFAAANGFTGESYGVGLNYLRICDAAGTQPDAQHVAQGIRHILDG 90 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV---NRVDNDPRAL 196 T + + + L + P+ G R +G V + A Sbjct: 91 --TIRAFSYEYESSSSTLRRWFRVIVTPMQ-------GSRSYGAVVMHINVSDLKQAEAA 141 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHK 250 + + + + + V E+ I S ++ + L + Sbjct: 142 MHQSEVRLRAIVDTAVDGIVVINERGIIESVNPAVTRMFGYTSNQLLGQNVKLLMPDPYH 201 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + L + ++ + + + + + + + ++ S Sbjct: 202 TEHDRYLTNYLQSGQKKVIGIGREVLGLRNDGVSFPIELAVSEMLVDGARKFTGIVRDIS 261 Query: 311 LSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 L + + V+ P + S GN+ N + Y + + + L Sbjct: 262 LRKQAEAQ---FRQVVESAPNGMLMIDSLGNITLVNKQVETMFGYSREEMLGRP--VEML 316 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENM 428 + ++ A + + A L + + + + + P P Sbjct: 317 IPERFRPNHPAHRIGYFSAPSSRAMGAGRELFGLHKSGQEFPVELGLNPI----DTPNGK 372 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + + + L Sbjct: 373 LALASIVDITMRKRTESALSKAAQDLE 399 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 40/399 (10%), Positives = 119/399 (29%), Gaps = 33/399 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144 I+ G ++ ++ + + G + +++G + + H + + ++ + L+ Sbjct: 163 INERGIIESVNPAVTRMFGYTSNQLLGQNVKLLMPDPYHTEHDRYLTNYLQSGQKKVIGI 222 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---RL 200 + +G + + + ++ + + R+F+G IV + A + Sbjct: 223 GREVLGLRNDGVSFPIELAVSEMLV-DGARKFTG-----IVRDISLRKQAEAQFRQVVES 276 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + V K+ +F R + H + P Sbjct: 277 APNGMLMIDSLGNITLVNKQVETMFGYSREEMLGRPVEMLIPERFRPNHPAHRIGYFSAP 336 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + + + ++ + + ++ L+ ++ + + Sbjct: 337 SSRAMGAGR--ELFGLHKSGQEFPVELGLNPI--DTPNGKLALASIVDITMRKRTESALS 392 Query: 321 LTPETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + ++ + A FL ++ + G++TLL LS Sbjct: 393 KAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDTALSTE 452 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 L S + + + + F E E +P + + Sbjct: 453 QRDYLQTLRHSSESLLRIINDI------------LDFSKIEAGKFTIEQIPFDLRMTIED 500 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + ++L +++A + I + G I Sbjct: 501 TLDMLAPASQDRHLELVGLIDAQTPRTVIGDP-GRIRQV 538 >gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1278 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 134/768 (17%), Positives = 271/768 (35%), Gaps = 69/768 (8%) Query: 89 IDAHGYLKEISEELPK----TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 D+ + + G ++G + VS + + + ++ T Sbjct: 278 TDSDRRILYANTAFETWAYLLEGRPLPSLVGKPISLVSRAIDAHLRPLLEEA-EKSATVI 336 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + W + + ++ P++ +++ R I+H L + + + Sbjct: 337 LREISW--QHRAEEITTEVTIFPLH---KDYETARWLIILHNITHRKRTERLLSQQKQFY 391 Query: 205 SHLHEIKKGHSSVEKEKYDIF----------------SQQSPPPHLRMKNKVSSLTEYYA 248 + E D + P R+ S Sbjct: 392 RQMLEALPIGVYTLDPLSDYTVSLWNPYMERITGVPRQKALGVPETRLFPPPFSEELEVL 451 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-------------QYFGTLQNN 295 ++ + L+ S E P QE+ + + + + + Sbjct: 452 NRKILEDPLTPVLVPSMEVEFPHQEESRIVKVQKRGVLTPEGELDHILVLLEDITEQRRT 511 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTP-ETVDKCPIPFFVY---SHGNLFYANPSFLLL 351 +E Y +H + + + + + + NP+ L Sbjct: 512 EEELERYRTHLEEEVARKSAELARAAMEMDAILRSTESVAICSMNRDLRIQIFNPTLARL 571 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 ++ + L + + +I L Sbjct: 572 SRMYFKRPPRREMRFTDLFPTRTMQRQVETAVSRVL--SGQTFTTR---FSISRRNLLPL 626 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + K N+ E + I + +R+M + +I + G II+ Sbjct: 627 HLEVVISPKRNEEGEILGATVIAMDITQRATVERQMRL----FKAIADTAPYGTVIIDAN 682 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 I+ N ++++ GY +E+++ + ++F + + LT + + + + Sbjct: 683 HTIVYANPYMARIHGYRLEEVMGQHLSIFHTEEQYEKLIEELTRAEDVGVMPS--QEIWH 740 Query: 532 STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + + + + D+S K+ + KL AK+ AE+ KS+ Sbjct: 741 VYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLDMSLQKEAEQKLKEAKEEAERAMRAKSE 800 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL AIIGF++++ + + Y + I SG +L ++ND+LD+ Sbjct: 801 FLANMSHEIRTPLNAIIGFTDLLA----SSFPSGKEASYLDAIRSSGKNLLMLINDILDL 856 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+GKM L + PV L + E ++ + K + +A +P + D ++Q Sbjct: 857 SKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAPALPPTVEIDELRLRQ 916 Query: 707 IALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + N++ NAI FT G + + S ++ + V DTG+G+ E E + F Sbjct: 917 VLFNLIGNAIKFTEQG-HVKVQVRGTLHTEESKVDLTISVEDTGIGIRPEEREAIFQSFH 975 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q + GTGLGL ++K +V+ G + S KGT + P Sbjct: 976 QSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVRIP 1023 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 108/357 (30%), Gaps = 19/357 (5%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + E + EE + FH T F L Sbjct: 188 EPEFLATVEPDARKSLEEFLAAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRIRPFLLLDV 247 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364 E L +D V + YAN +F + Sbjct: 248 HAETLYFESLQEQRRLFTSVLDSFTDYILVTDSDRRILYANTAFETW------AYLLEGR 301 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L +L+ P + AI + + +A+ L I W T + ++ Sbjct: 302 PLPSLVGKPISLVSRAIDAHLRPLLEEAEKSATVILREISWQHRAEEITTEVTIFPLHKD 361 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVS 482 E I + +R + + +LEA G+ ++ + + N + Sbjct: 362 YETARWLIILHNITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYME 421 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKL 538 ++ G P + L P T + +IL L L E E ++ Sbjct: 422 RITGVPRQKALGVPETRLFPPPFSEELEVLNRKILEDPLTPVLVPSMEVEFPHQE-ESRI 480 Query: 539 LSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + R ++ + + DI+E ++ + +L + E+E + KS LAR + Sbjct: 481 VKVQKRGVLTPEGELDHILVLLEDITEQRRTEEELERYRTHLEEEVARKSAELARAA 537 >gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 813 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 113/548 (20%), Positives = 220/548 (40%), Gaps = 21/548 (3%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + D + ++ ++ + + E Sbjct: 246 FTFEMDSLRRDGTVIPQEVNNRLIEYDGETAVLSIGRDISKRRQTEKALRDSERKYRMLF 305 Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 ++ P + G + N +F+ T + + + LL+ P+ Sbjct: 306 EEFPGGIAQFDKYGTIIVCNENFVNFTGSGENEKL-----IFNLLNPPEEKKQEEKGFTC 360 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L + + I + + ++ + + + + + Sbjct: 361 L-----PEVPIHCDIKYISSLEDEIIPGEITYKPLISENSRFNGGIILVEDLTEVKRLEA 415 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + L ++ + +R G+ ++ N+ L +DI+ K F+ Sbjct: 416 VRLQQTETLRKLVGSIPVPAFCKDRNGVYIACNKGFENLLRVQKQDIIGKHIYDFIPHKI 475 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDI 561 + ++ T + + + I S M DI Sbjct: 476 AENYHAMDIGLVKHKRNHVY--ETSLKFPDGSVHQVMLNKFIFSGVTEEDSVLLGIMIDI 533 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E KQ + ++ AK +AE + K+ F+ +SHE+RTPL A+IGFS+++ ++ GPL N Sbjct: 534 TERKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPL-NE 592 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + Y I +SGN +LD++ND+LDISK+E G + L++E V + + E ++ + + Sbjct: 593 KQKRYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSAD 652 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I+I + ++ ++AD +KQI NIL+NAI F+ G++ I + + + V Sbjct: 653 KNIIIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYAEPRED-MIEISV 711 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G+ + EK +PF QI S + G GLGL L K V+ + GK ++ ++P G Sbjct: 712 EDEGIGIQESDYEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGG 771 Query: 802 TLIEIIFP 809 ++ P Sbjct: 772 SIFTFRIP 779 Score = 77.4 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 8/143 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + +++E + D I I + G +L N + FGY ++ K Sbjct: 177 KFKTLIENSGDSILIHDMNGKVLEANHVACETFGYTRSKMIGKHIKDLRTSIHLIEFGQQ 236 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + ++ ++ ++ + + + + DIS+ +Q + Sbjct: 237 IEKLKQTG---YFTFEMDSLRRDGTVIPQEVNNRLIEYDGETAVLSIGRDISKRRQTEKA 293 Query: 571 LSHAKKIAEKESSHKSDFLARVS 593 L +++ +F ++ Sbjct: 294 LRDSERKYRMLFE---EFPGGIA 313 Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 47/369 (12%), Positives = 110/369 (29%), Gaps = 21/369 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D +G + E + +T G KMIG + D+ +H+ + LK+ + + Sbjct: 193 DMNGKVLEANHVACETFGYTRSKMIGKHIKDLRTSIHLIEFGQQIEKLKQTGYFTFEMDS 252 Query: 150 WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT +P ++ I Y I + ++K+ L Sbjct: 253 LRRDGT--VIPQEVNNRLIEYDGETAV-----LSIGRDISKRRQTEKALRDSERKYRMLF 305 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E G + + I + + L + + K E+ E Sbjct: 306 EEFPGGIAQFDKYGTIIVCNENFVNFTGSGENEKLIFNLLNPPEEKKQEEKGFTCLPEVP 365 Query: 269 LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + ++ + + L + + + + + ET+ Sbjct: 366 IHCDIKYISSLEDEIIPGEITYKPLISENSRFNGGIILVEDLTEVKRLEAVRLQQTETLR 425 Query: 328 KC----PIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 K P+P F +G N F L + + D I + + + +A+ Sbjct: 426 KLVGSIPVPAFCKDRNGVYIACNKGFENLLRVQKQDIIGK--HIYDFIPHKIAENYHAMD 483 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 ++ ++++ + + F + E+ GI + + + Sbjct: 484 IGLVKHKRN-----HVYETSLKFPDGSVHQVMLNKFIFSGVTEEDSVLLGIMIDITERKQ 538 Query: 443 NKRKMEIEV 451 + +M Sbjct: 539 AEERMLQAK 547 >gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium vinosum] Length = 742 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 136/733 (18%), Positives = 279/733 (38%), Gaps = 52/733 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLL-KRQNTWYGKTT 148 A G E ++ +G + + +R+ D D HI +L + ++ + +T Sbjct: 38 ADGSTLEFNQVSCAQLGYTSEEFARLRISDYEVQESAEDVAAHIRRVLTQGRDEF--ETQ 95 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHL 207 +G + V + ++ L + R +V R D R + ++ Sbjct: 96 HRHKDGRVIDVSVAVSCLDLGERP------VLLAVVRDISRRKQDERQAHQAEERLQLAT 149 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTEKYPL 261 K G + ++ + + ++ + V T +K + L Sbjct: 150 EAAKLGIWDYDIQQDRLIWDERMFQLYGLEPREFGYRFVDWSTLVLPESLQRVKADFQAL 209 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE---- 317 + S + + + T + ++ + + + Sbjct: 210 VESGRPFDVKFQIRRPSDGEIRTLRGLARVTHDDQGRAIRVVGVNEDITEFQAVQREILD 269 Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E + ++ + V + G Y +P L+ Y + + P+ Sbjct: 270 REQRLQQLAEQSRTVTWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYD---LHPEPG 326 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + + ++ I + ++ + + G + + Sbjct: 327 REAFREAIFQAIA--QQLKFQGHVNPIIRKDGRVIWVSTNAIPVTDDRGLLLGYRGSDVD 384 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVED 491 + + K +E E + I E T +A+ +++ I N A ++ + Sbjct: 385 ITEAKYAKEALEAEKERFRGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQA 444 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + T + L + Q + ++++L + R S Sbjct: 445 VIGRCLTECFPAAIEMGLVDMLRRVNLTGQTQYM---PSAYYQDDRLQAWRENTIFKLSS 501 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +D++E K+ + AE+ S KS FLA +SHEIRTP+ A+IG S+++ Sbjct: 502 GEVVAVYNDLTEIKRAQE-------AAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLL 554 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + +Y I S L+L I+ND+LD SKIE+GK++L +P SLD+ + + Sbjct: 555 ETPL----DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQM 610 Query: 672 ISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L A+ + I + A +++ R+ D ++Q+ +N+LSNA+ FT G Q+++S Sbjct: 611 RTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG-QVVLSIR 669 Query: 731 HTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + VRDTG+G+ + + KPF Q +S R GTGLGL +++ +V+ Sbjct: 670 QLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVE 729 Query: 787 ANMGKFYIFSTPA 799 G + STP Sbjct: 730 KMGGTLVLESTPG 742 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 6/148 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498 I + + ++ ++ E D +I+ +G L N+ GY E+ R + Sbjct: 7 RSIAATEAARQDVEFRTLFEVYPDATILIDPADGSTLEFNQVSCAQLGYTSEEFARLRIS 66 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556 + Q + + ++ +L+ E T K+ +++ + + + L Sbjct: 67 DYEVQESAEDVAAHIRRVLTQGRD---EFETQHRHKDGRVIDVSVAVSCLDLGERPVLLA 123 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DIS KQ++ + A++ + + Sbjct: 124 VVRDISRRKQDERQAHQAEERLQLATEA 151 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 112/390 (28%), Gaps = 43/390 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTW 143 TW +DA G +S G +++G R D+ + I + +Q + Sbjct: 285 TWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYDLHPEPGREAFREAIFQAIAQQLKF 344 Query: 144 YGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL 200 G + +G + + A+P+ G+RG I A +R Sbjct: 345 QGHVNPIIRKDGR--VIWVSTNAIPVTDDRGLLLGYRGSDVDITEAKYAKEALEAEKERF 402 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLK 255 F + + + IF+ +P R LTE + ++ Sbjct: 403 RGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQAVIGRCLTECFPAAIEMGL 462 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + + ++ + Q ++ L S E ++ N + Sbjct: 463 VDMLRRVNLTGQTQYMPSAYYQDDRLQAWRENTIFKL-----SSGEVVAVYNDLTEIKRA 517 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E A FL ++ + GLS LL L Sbjct: 518 QEAAERASR-------------------AKSQFLANMSHEIRTPMNAVIGLSDLLLETPL 558 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + S R + + L ++ PF + + G E Sbjct: 559 DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEA 618 Query: 436 EDVDTRI-------NKRKMEIEVMQLCSIL 458 + D + + ++E + ++L +L Sbjct: 619 DARDIELIFDLAVSSLHRVEGDALRLRQVL 648 >gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 371 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 106/363 (29%), Positives = 181/363 (49%), Gaps = 7/363 (1%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 ++ + +DGI II +G L N+ GY ++L+ + + Sbjct: 5 YETVFNSVNDGILIITLDGRFLEVNQITCDDLGYQRHELLQMTVMDITPPEFREMARENV 64 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKL 571 + T+ K+ L+ + + I + + +I+E K+ + + Sbjct: 65 IGKMKQGGGIV---ETISICKDGSLVPIELNIHPIEYNGAPAILAVARNITERKKAEEAM 121 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK AE + KS+FLA +SHE+RTPL +IIGFS+VI N+ G L N ++ + + Sbjct: 122 LSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSL-NELQKKFISNVI 180 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +G +L+I+ND+L S+IE+GKM LH + E+++E L+ A+EK I ++ + Sbjct: 181 SNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIASEKNIELKFNID 240 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P I AD +QI N+++NAI FT G ++ I + + V + V+D+G+G++ Sbjct: 241 IGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISDD-FVHISVKDSGIGISPD 299 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K PF Q+ +S GTGLGL + K V+ + GK ++ S KG+ P Y Sbjct: 300 DQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGKGSTFGFRMPTY 359 Query: 812 DTS 814 S Sbjct: 360 PES 362 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 12/137 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKTTL 149 G E+++ +G +++ M + D++ + N IG + + +T Sbjct: 22 DGRFLEVNQITCDDLGYQRHELLQMTVMDITPPEFREMARENVIGKMKQGGGIV--ETIS 79 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ VPI+L PI E++G + + Sbjct: 80 ICKDGSL--VPIELNIHPI-----EYNGAPAILAVARNITERKKAEEAMLSAKLAAEDAN 132 Query: 209 EIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 133 KSKSEFLANMSHELRTP 149 >gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1226 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 148/781 (18%), Positives = 270/781 (34%), Gaps = 75/781 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150 G ++ + +G + ++ + L DV + D + ++ + +T Sbjct: 181 DGKFIFVNRAWREALGYNSDEISALNLRDVLHPDYADSTLGLLKRIQEGDKLPYVETVFR 240 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------------ 198 G L++ + N + FR I+H K Sbjct: 241 TKSGKTLFLSGSVNC---RFDNGRPTAFR--CILHDTTGKIRAEKSQKLYYSIANWTINT 295 Query: 199 ------------------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 F L++ K + S + F ++ N + Sbjct: 296 PNLGEFYHKIHEELGNIIDARNFFIALYDSSKTYLSFPYYVDEYFGGNMRFTKRKLGNGL 355 Query: 241 SSLT-----EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY------------ 283 T + ++ D+ K + P+ + + + Sbjct: 356 IEYTILANKPLFLYEKDIRKLADQHQVDLYGQLQPQVMLTAPLRIGEEITGIIGVKSYDD 415 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342 + L+ S + A D+ D + V L Sbjct: 416 AQTYGPRDLELLEFISGQVALAIARKQSEARLDKQNARLNAIFDSSTYLIWSVNKALKLT 475 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 N ++ L +Y+ + I L +DN ++ R A + L Sbjct: 476 SFNKNYTRLIEYQLNESPSIQASAPDLGWRMIGADNRKNLEDRYRQAFRG-FAQNFELFF 534 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 E L P A + + GI + + + + + I E Sbjct: 535 ETPKGETYLEFHLNPILLAGGVIDEVS--GIARDITNRKRAEIATRQSEEKFRGIFENLQ 592 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 D A ++R+G I + +V K GY +++L + T F + R Sbjct: 593 DIYARVDRKGRITMISPSVFKRMGYTPDEVLGQEITRFFIDENDIRHAMF----KLGRNR 648 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 K+ + L ++ DI+E K++ +L AK A Sbjct: 649 SLRNFEASMRRKDGSERQFMFNMLMLNEGPGSDSVVAVLARDITELKRQSAELVKAKNEA 708 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ K FLA +SHEIRTP+ +IG +++ + + + Y + RS +L Sbjct: 709 ERSLKVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL----DEEQRSYVKTVKRSSETLL 764 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 +I+ND+LD+SKIE+GKM LH PV+ E + I+L AN K + +++P + Sbjct: 765 NILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQANSKNNELTYHLGSDLPTFV 824 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYEL 753 +AD + Q+ N+ SNAI FT G I + + S + + V+D+G+G++ + Sbjct: 825 IADQTRLLQVLSNLTSNAIKFT-ENGTIRVEASLISKRGKFNRIRIEVKDSGIGISQQNI 883 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 F Q+ S + GTGLGL ++K + G+ + ST G+ L +T Sbjct: 884 NLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIGVDSTVGMGSTFWFTIELKET 943 Query: 814 S 814 S Sbjct: 944 S 944 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 92/320 (28%), Gaps = 19/320 (5%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGN 340 + L + + FD +TVD+ + + G Sbjct: 1 MRWSAKTKDELVAEIQRLQHERNEVAVTDALPAFD-----VRQTVDQLNLVGLTIERDGT 55 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 L YANP +T ++ I + P + L Sbjct: 56 LSYANPYTYRVTAWQPEHIIGQNFF--DIFIPPAERAKLEAEFEDALTKGGFPEQKEITL 113 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + F I + + R + QL +++ Sbjct: 114 LA---RSGALRNVQVNSFIINGADGHVSSFTLIGEDVTNKRRVASALSNTNAQLQDLVDN 170 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 TSD I ++ +G + NRA + GY ++I L + L I D Sbjct: 171 TSDLIQLLTLDGKFIFVNRAWREALGYNSDEISALNLRDVLHPDYADSTLGLLKRIQEGD 230 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK--NKLSHAK 575 + T+ TK K L L + + + +HD + + + KL ++ Sbjct: 231 KLPYV--ETVFRTKSGKTLFLSGSVNCRFDNGRPTAFRCILHDTTGKIRAEKSQKLYYSI 288 Query: 576 KIAEKESSHKSDFLARVSHE 595 + + +F ++ HE Sbjct: 289 ANWTINTPNLGEFYHKI-HE 307 >gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1578 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 133/763 (17%), Positives = 269/763 (35%), Gaps = 52/763 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D++G I++ +G ++IG +L D+ + +LLK+ + Sbjct: 599 LDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGYSINSLE 658 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + I L PI F R + + ++ + + L Sbjct: 659 LSMLRSNGT-VMSIMLNVNPIQDTEGNFIMSR--ATLFDISEHKEAEKTLQKYADEITDL 715 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLL 262 + + + +V ++ K + + + Sbjct: 716 YNNAPCGYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKGCQIFQQNFEEF 775 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-----------ESFEYLSHRNHPSL 311 + + + + +++ + + + R + Sbjct: 776 KQSGWVKGLEFEMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALRERKQI 835 Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + L +D G + N + Y +++ I ++ Sbjct: 836 EQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKT--TPAII 893 Query: 371 DAPK------------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 P+ L + R I+ + + Sbjct: 894 HDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPVL-LSVT 952 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 N + GI + + +R + +L LEA+ DG+ N E + + Sbjct: 953 ALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDGLWDWNIETGEVYFS 1012 Query: 479 RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 +++ GY V ++ + + + L L + TK Sbjct: 1013 PRYAEMLGYRVNELPPNVTTWEGLVYPKDMIWVKEILDSHLKDSTTS-YDFDYRVRTKSG 1071 Query: 537 KLLSLRI---IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + ++ + T DIS+ K + +L AK+ A + KS FLA Sbjct: 1072 QWKWIADYGKVVARDGEGKPLRMLGTHKDISQRKHIELELQKAKETAIAANLSKSIFLAN 1131 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL AI+GF++++ + + E I+RSG +L +++D+LD+SKIE Sbjct: 1132 MSHELRTPLNAILGFTQLLGRD---TSLSAYHQERLQIINRSGEHLLGLIDDILDLSKIE 1188 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 +G++ L L + ++ A K I + +N+PR I D + ++QI +N Sbjct: 1189 TGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDDNLPRYIKIDSKKLRQILIN 1248 Query: 711 ILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +L+NAI FT G + ++ + + VI V DTGVG+ EL+ + F Q + Sbjct: 1249 LLNNAIKFTHQGTVTLRVNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGK 1308 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +I +G+GLGL +++ +V GK + S +G++ P+ Sbjct: 1309 KIN-QGSGLGLAISQKLVQLMGGKIEVNSILNQGSIFSFEIPV 1350 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 55/527 (10%), Positives = 136/527 (25%), Gaps = 47/527 (8%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155 ++ G ++ G + S + + + +L ++ + + T Sbjct: 481 VNSAFTYLFGYLPDEVYGQTTEMLYVSSEEYYEQDRKRFNLTAKEQNKPYEIRYRRKDST 540 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-- 213 + + + GF GIV + + K+ + + L+ Sbjct: 541 IFFT--ETVGSSVKDNQENVIGF--VGIVRDISERKEAQETLKKYADEITDLYNNAPCGY 596 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLP 270 HS + + + +V L + K ++ + LL S Sbjct: 597 HSLDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGYSINS 656 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + N + +Q+ H + + + Sbjct: 657 LELSMLRSNGTVMSIMLNVNPIQDTEGNFIMSRATLFDISEHKEAEKTLQKYADEITDLY 716 Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + P + + S+G N + L Y I + + Sbjct: 717 NNAPCGYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKGCQIFQQNFEEFK 776 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + + + + + + + R Sbjct: 777 ------QSGWVKGLEFEMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALR 830 Query: 446 KMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + +L +IL++ + I +G I++ N A K GY +++ K Sbjct: 831 ERKQIEQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKTTP 890 Query: 499 VFLEQNTPSVMNH-----YLTEILSLDLR---------QTLEKITLGSTKEEKLLSLRII 544 + V L ++ + E K+ + + Sbjct: 891 AIIHDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPVLLS 950 Query: 545 IKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + L S + DI++ KQ + L +++ + D Sbjct: 951 VTALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGD 997 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 75/253 (29%), Gaps = 16/253 (6%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM------LYRSDRTC 393 N +F L + + + +S L + D+ + LY Sbjct: 333 RFEGTNEAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDRWVSLMGKCLYDESGQA 392 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG-----IEPEDVDTRINKRKME 448 I + I +E L + N+ + + ++ E + + ++ Sbjct: 393 IQMIGIIKDITHRKETELKLKKFNDRLENRVNQRTAELREANHQLQEELLKRHQIEEALQ 452 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + + +I +A D I ++ I N A + LFGY +++ + + + Sbjct: 453 QKSAEFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEVYGQTTEMLYVSSEEYY 512 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 Q K+ + + + + + + DISE Sbjct: 513 EQDR-KRFNLTAKEQNKPYEIRYRRKDSTIFFTETVGSSVKDNQENVIGFVGIVRDISER 571 Query: 565 KQEKNKLSHAKKI 577 K+ + L Sbjct: 572 KEAQETLKKYADE 584 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 35/383 (9%), Positives = 94/383 (24%), Gaps = 17/383 (4%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + F L + + I + ++ ++ SL + + + + Sbjct: 339 EAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDRWVSLMGKCLYDESGQAIQMIGI 398 Query: 262 -LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E + + + Q L+ + + E L R+ + Sbjct: 399 IKDITHRKETELKLKKFNDRLENRVNQRTAELREANHQLQEELLKRHQI--EEALQQKSA 456 Query: 321 LTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 P N +F L Y + L + + Sbjct: 457 EFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEVYGQT--TEMLYVSSEEY-YE 513 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + R + + + + GI + + Sbjct: 514 QDRKRFNLTAKEQNKPYEIR---YRRKDSTIFFTETVGSSVKDNQENVIGFVGIVRDISE 570 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 + + ++ ++ + G ++ G+ + N GY E ++ K Sbjct: 571 RKEAQETLKKYADEITDLYNNAPCGYHSLDSNGVFIHINDTELTWLGYTREQVIGKVKLL 630 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 L + + + + ++S+ + + + + + Sbjct: 631 DLLIPKSRKTFSQHFELLKQG--YSINSLELSMLRSNGTVMSIMLNVNPIQDTEGNFIMS 688 Query: 559 H----DISEWKQEKNKLSHAKKI 577 DISE K+ + L Sbjct: 689 RATLFDISEHKEAEKTLQKYADE 711 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 13/166 (7%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + D ++ Q +EA + G N + + L G Sbjct: 279 ERDRTSTNTALKQTQYQFQQAIEAANLGTWQWNLLNNNVILSPQAETLLGLQNCRFEGTN 338 Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 F L ++ + + L + L+ + ++ K L S Sbjct: 339 EAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDR-------WVSLMGKCLYDESGQ 391 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + DI+ K+ + KL E + ++ L +H++ Sbjct: 392 AIQMIGIIKDITHRKETELKLKKFNDRLENRVNQRTAELREANHQL 437 >gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1245 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 130/770 (16%), Positives = 256/770 (33%), Gaps = 80/770 (10%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIG-------------------MRLCDVSDILHIDPNN 131 G + + K +G A +++G + ++++P Sbjct: 72 PEGGISLFNRGAEKLLGYRADEVVGLLSPLRFHLAAEVAAAKAGCNITPDWFPIYVEPA- 130 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 R + + T +G +P++L I + +G+ +V R Sbjct: 131 ------ARGESRKQEWTFVHKDGHQ--IPVELVVTAIC-EDGRITGY--LSMVTDIRERK 179 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLTEYY 247 ++ ++K++ + + V + F + + + + Sbjct: 180 QAEEQLRQSEQKYASMFHMMPDTVGVSRMSDGTFIEVNASFERATGWSKDELIGHSSLEI 239 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSH 305 + +++ ++ S+ + T + + Y + F Sbjct: 240 GLWEPEVRSRTLDIVRSQGRLENHEFVMTTKSGEKRHALMYMAPIYINGEPCLYFIARDI 299 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 + P ++ G N F K + + Sbjct: 300 TEQVRADQNLKNERTRLYTLLQTIPDLIWLKDPGGAYLMCNSRFEQFFGAKEAEIVGK-- 357 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 +L+D + + + + + I ++ Sbjct: 358 -TDYDFVDKELADFFREHDQKALAAAGASVNEEWVTFAV---DGHRELLETIKTPMRDEE 413 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSK 483 + + GI D R + + + + E + I R +L+ N A + Sbjct: 414 GKLIGVLGIARNITDIREAQENLRDSEQRYRHLFEQNPAPMLIYERGSFQLLAVNEAFLQ 473 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +GY ED+ + + ++ K+ LS+ Sbjct: 474 HYGYTPEDVTQLRLPDLYPAEEKERIIALANSLVGHANAG----EWHHCRKDGSRLSIVA 529 Query: 544 IIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKI------------------AEKESS 583 L + + DI+ KQ + +L+ + A+ Sbjct: 530 TSHDLIYKGHTARVAVITDITARKQAEEELNRYRLHLEELVKTRTAELEAARDSAQAADQ 589 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ A+IG + P + +Y + + +L I++D Sbjct: 590 AKSEFLANMSHEIRTPMNAVIGMIHLTLKTEMSP----KQRDYLRKAGFAADSLLGIIDD 645 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SK+E+GK+ L L E + S+V + A+EK + A +P +++ D Sbjct: 646 ILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKIAPEVPAQLIGDPL 705 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEV--ILRVRDTGVGMTNYELEKAM 757 + QI +N+ +NA+ FT G +I + N V VRD G+GMT +L+K Sbjct: 706 RLGQILINLCNNAVKFTGQG-EIFVFIEQLDCRENNRVMLRFSVRDNGIGMTPEQLDKLF 764 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 PF Q S R GTGLGL ++K +V G+ S P KG++ Sbjct: 765 TPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFT 814 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 19/207 (9%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + E+ ++ + ++ + L ++++ Sbjct: 1 MRRRSDQPESWDEQRNRIIGLGEHSARKSYYPELKVQLQQLEEARKSLAKLNSFLQAVMD 60 Query: 460 ATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN----------TP 506 A ++ + +I EG I NR KL GY ++++ P L TP Sbjct: 61 AATEIAVIVITPEGGISLFNRGAEKLLGYRADEVVGLLSPLRFHLAAEVAAAKAGCNITP 120 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISE 563 Y+ + R+ + K+ + + +++ + Y + DI E Sbjct: 121 DWFPIYVEPAARGESRK---QEWTFVHKDGHQIPVELVVTAICEDGRITGYLSMVTDIRE 177 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLA 590 KQ + +L +++ D + Sbjct: 178 RKQAEEQLRQSEQKYASMFHMMPDTVG 204 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 24/250 (9%), Positives = 69/250 (27%), Gaps = 11/250 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142 W D G + + G +++G D D D + L + Sbjct: 326 LIWLKDPGGAYLMCNSRFEQFFGAKEAEIVGKTDYDFVDKELADFFREHDQKALAAAGAS 385 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + ++G ++ P+ + G G I + + + ++ Sbjct: 386 VNEEWVTFAVDGH--RELLETIKTPMRDEEGKLIGVLG--IARNITDIREAQENLRDSEQ 441 Query: 203 KFSHLHEIKKGHSSV-EKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKY 259 ++ HL E + E+ + + + V+ L + + + Sbjct: 442 RYRHLFEQNPAPMLIYERGSFQLLAVNEAFLQHYGYTPEDVTQLRLPDLYPAEEKERIIA 501 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + ++ + L K ++ + +E Sbjct: 502 LANSLVGHANAGEWHHCRKDGSRLSIVATSHDL--IYKGHTARVAVITDITARKQAEEEL 559 Query: 320 NLTPETVDKC 329 N +++ Sbjct: 560 NRYRLHLEEL 569 >gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1002 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 118/781 (15%), Positives = 268/781 (34%), Gaps = 83/781 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144 W +G L + + +G+ + + ++ ++ I + L+ Sbjct: 22 LWR--KNGALIDANSTYAAILGSTVPETLNFNYWQITPENYLASERTILEQLEQTGCHQA 79 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGKRL 200 + +G VP+ ++ + I ++ E + + R + K+ Sbjct: 80 YEKEYLHQDGHL--VPVKVSTV-IIEKDGEKLMWSSVEDISNIRQAQKERQQSEKILKQS 136 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + ++ L V + F + + + + D E Sbjct: 137 EARYRSLVTTNTQIIWVSSPEGICFELKDWIAYTGQTLAEAENGGWIDAVHPDDRGYTGE 196 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSA 313 + + + S + + N + + + E++ + A Sbjct: 197 AWGIAVANRSQYQIEYRIRGKDGNYRYFWVWGAPVIEEDGDVREWIGTCTDIHDRKLAEA 256 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDA 372 + V + + ++ + +S ++E G L + Sbjct: 257 ENQRLKERYRSLVTASSQIVWGTTPEGWGISSEMLTWIAYTGQSEAEVEGWGWLDPIHPD 316 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + A ++ R + + ++ + Q G Sbjct: 317 DRTRSFEAWNASVVKR------SIYQTEYRLRGKDGTYRYFSVCGVPVLKQDGSIQEWIG 370 Query: 433 IEPEDVDTRINKRKME---------------------IEVMQLCSILEATSDGIAIINRE 471 + D ++ + + E L +IL+ +DG+ +++ Sbjct: 371 TCTDIHDRKLAEMALRQLNHQLEARVAERTAALQNTLAEAQGLNAILDNLADGLLVVDTT 430 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N A + G + ++ + + S + L Sbjct: 431 GQITHYNPAFLAMHGLTATTLNGH-----YQELPIFGLADLIERTRSHPGEVFAADVALA 485 Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + I + + +L + D++ K+ K+D Sbjct: 486 KDRIGQAVGTAIFKRTDTKEAAACFGSALLIRDVTAEKEI--------------DKMKTD 531 Query: 588 FLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGNPRYI---------EYANYIDRSG 634 F++ VSHE+RTPLT+++GF+ E ++ F L + N I Sbjct: 532 FISTVSHELRTPLTSVLGFASIIQEKLQTDVFPVLSTEDRKLQKTIKRVGDNLNIIVSEA 591 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + ++ND+LDI+K+E+GK+ +P++ E + A + + + T + + Sbjct: 592 ERLTSLINDVLDIAKMEAGKVEWQMQPINPGELLDWAANSTAALFETNGLQLLTEIESGL 651 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P+I+ D + Q+ +N++SNA+ FT G + + V + V DTGVG+ + Sbjct: 652 PQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRVKQDKDG-VCISVIDTGVGIAPEDQP 709 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 K + F Q+ ++ + +GTGLGLP+ K +V+ + G+ ++ S P G++ P+Y ++ Sbjct: 710 KVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEPGHGSVFSFQIPIYASN 769 Query: 815 H 815 H Sbjct: 770 H 770 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + E G+ + + G ++ N + + G V + L + +N + L Sbjct: 10 RLLWEKCPVGLVLWRKNGALIDANSTYAAILGSTVPETLNFNYWQITPENYLASERTILE 69 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLS 572 ++ Q EK L + L+ +++ + + ++ DIS +Q + + Sbjct: 70 QLEQTGCHQAYEKEYLHQ--DGHLVPVKVSTVIIEKDGEKLMWSSVEDISNIRQAQKERQ 127 Query: 573 HAKKIAEKESS 583 ++KI ++ + Sbjct: 128 QSEKILKQSEA 138 >gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 940 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 139/710 (19%), Positives = 244/710 (34%), Gaps = 35/710 (4%) Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLW--PIEGTNLYVPIDLAALPIYSRNR--EF 175 + ++ I L + + G DL I Sbjct: 109 QIDALMDITRTPERDALFDFTRPYISIPHVLVGRKSGGFYRQESDLTGKRIALEKGFNNV 168 Query: 176 SGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 + FR F V V + AL + + G+ +V + + P Sbjct: 169 TYFRNNFPAVTVREYGSTAEALKAVARGE----ADAYAGNRAVVQHLLEKLELNGLMPMG 224 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + S L A L L + + I T+ Y L Sbjct: 225 TLIAPRSVLQFGVAKGQTELLGILDKALAAIPAGERSAIADRWIPNPYETRIDYRKLLLA 284 Query: 295 NSKESFEYLSHRNH-PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT 352 L+ + ++ + + S L N F L Sbjct: 285 ALLVITLLAGLVLVTRRLNKRLQQQQDYWQALFEHNGTGNLIVSSERLMLKVNQQFCDLF 344 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y+ + I + L L P + D SA + Sbjct: 345 GYREEELIGQSVRLLHLDQQH----YEGWAPTFMSVRDGKT-HLSAEYPMRHKDGSLFWC 399 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + + + I + + + ++ M L L+ + +++ Sbjct: 400 LFTGVRLQLPDGQRGVVWSAI--DITERKQAEQTM----ALLNFALDTIHEAAYLVDETT 453 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + N+ + GY E++L + + E++ + + Sbjct: 454 RFIFVNQEACRSTGYSREELLTMKIGDVDAEFPEDQWPVFWQELIRRRA---ITFEGMHK 510 Query: 533 TKEEKLLSLRIIIKKLP-FSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + I Y DISE K+ + L AK+ AE S K++FLA Sbjct: 511 DCSGRTYPVEITANYFEFDGQGYNLGLARDISERKKTEAVLQEAKERAEAASRAKTEFLA 570 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ II + +++ EY + S +L +++D+LDISKI Sbjct: 571 NMSHEIRTPMNGIISMAHLLRMTELTS----EQQEYLASLQISSKNLLALISDILDISKI 626 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709 E+GK+ L + S+ + E ++ +KR+ I T ++ +P IL D KQI L Sbjct: 627 EAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLPEILLGDSLRFKQILL 686 Query: 710 NILSNAIHFTPSGGQIIIS--TTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N+L NAI FT GG I++ + N+ + + + DTG+GM+ LE+ PF Q +S Sbjct: 687 NLLGNAIKFTEQGGISIVAKPSARHDNQLIMRIMIADTGIGMSPEVLERVFSPFEQADSS 746 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + GTGLGL + + +V+ G+ + S P G+ + P P Sbjct: 747 TTRKYGGTGLGLSICRRLVELMGGRIWAASRPGSGSTFFVELPFVVREAP 796 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 55/507 (10%), Positives = 127/507 (25%), Gaps = 47/507 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D +++E ++ G +++ M++ DV D L R+ + Sbjct: 449 VDETTRFIFVNQEACRSTGYSREELLTMKIGDVDAEFPEDQWPVFWQELIRRRAITFEGM 508 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSH 206 G V I EF G +G+ G+ A+ + ++ Sbjct: 509 HKDCSGRTYPVEITANY-------FEFDG-QGYNLGLARDISERKKTEAVLQEAKERAEA 560 Query: 207 LHEIKKGHSSVEKEKYDIF--SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263 K + + S LRM S EY A K + Sbjct: 561 ASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTELTSEQQEYLASLQISSKNLLALISDI 620 Query: 264 ---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 S+ + + ++ ++ ++ + +++ + + + + Sbjct: 621 LDISKIEAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLPEILLGDSLR 680 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLL-------TKYKSVDDIEIAGGLSTLLDAP 373 ++ G + L + Sbjct: 681 FKQILLNLLGNAIKFTEQGGISIVAKPSARHDNQLIMRIMIADTGIGMSPEVLERVFSPF 740 Query: 374 KLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + +D++ + + L R R+ S +PF Sbjct: 741 EQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAASRPGSGSTFFVELPFVVREAPAGTA 800 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSK 483 + PE V + E Q + +IL + + ++ +G +A + Sbjct: 801 LRLECRPEPVPEGRPLVVLLAEDNQINARSMSAILTRSGHRVVTVD-DGQ-----KAFEQ 854 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + IL V + + + T + L Sbjct: 855 WHSNRWDCILM---DVQMPVMDGVEATRLIRQAEQASGSHTPVIALTAHAMQGDREWLMA 911 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNK 570 Y D+ + +E + Sbjct: 912 -----EGFDGYVAKPVDVEQLFREIEQ 933 Score = 42.3 bits (98), Expect = 0.36, Method: Composition-based stats. Identities = 15/238 (6%), Positives = 49/238 (20%), Gaps = 12/238 (5%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEG 154 ++++ G ++IG + + + + + + + +G Sbjct: 336 VNQQFCDLFGYREEELIGQSVR-LLHLDQQHYEGWAPTFMSVRDGKTHLSAEYPMRHKDG 394 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + + + + + G I L+ +HE Sbjct: 395 SLF--WCLFTGVRLQLPDGQ-RGVVWSAI--DITERKQAEQTMALLNFALDTIHEAAYLV 449 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + + + R + + + A + + + Sbjct: 450 DETTRFIFVNQEACRSTGYSREELLTMKIGDVDAEFPED---QWPVFWQELIRRRAITFE 506 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + T L S + E + Sbjct: 507 GMHKDCSGRTYPVEITANYFEFDGQGYNLGLARDISERKKTEAVLQEAKERAEAASRA 564 >gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp. CCY0110] Length = 1565 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 124/748 (16%), Positives = 255/748 (34%), Gaps = 49/748 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F G ++E + A +IG V + + L ++N Sbjct: 833 FISRFLPDGTTLFVNEAYCRYFSINASDIIGKNYQPVIYEPDQEQVREQVNSLSKENPIT 892 Query: 145 GKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + G + I+ ++ F ++ G + + AL + Sbjct: 893 LIENRIVVNGEIRWTQWIN---RMLFDEQGNFIEYQSVG--RDIQELKEAEALLAEEVSR 947 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + L + V + + + + + L + + + + Sbjct: 948 SNTLFDSSIDGIVVIDHQGYVIRSNASFSRMLGYTPEETAKLHLRDWEANYTPEEIEQKI 1007 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGE 319 S+ + + + Y + ++ N + + A E Sbjct: 1008 AESDLCKDIFETRHRRKDGSIYDVEISATPVRWGNEIVQLCICRDISDRKEAEAALLRSE 1067 Query: 320 NLTPETVDKCPIPFF---VYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 V P + +Y G Y +P L + + ++ Sbjct: 1068 ARYQNLVVTVPGVIYDYVIYPDGSERFAYISPRCRELLETEPDILKRDFSVFWGMVHPQD 1127 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L K L S + I + + Q +GI Sbjct: 1128 LPIILQSKEYSL----DNNECFSTEIRIILPSGQIKWIKKTSQPSSKPQADGGRRWSGIM 1183 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D + + +E + S E G+ +I+ EG L N+A + GY +++L Sbjct: 1184 IDISDRKRIELALEESEERFRSAFENAGIGMVLISLEGEFLKVNQAFCGMLGYSEQELLL 1243 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552 K F + ++ N L ++ S +T + ++ + I + Sbjct: 1244 KNFQEITHPDDLTMSNKGLQQL-SSGQIKTYQMEKRYIVASGSIIWCSVTISSIKDQDQH 1302 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + DI+E + + K++F++ VSHE+RTPLT++ G + Sbjct: 1303 PLYFVTQVQDITERR--------------ELDRLKTEFISVVSHELRTPLTSMRGAL-GL 1347 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + R+ + ++ +VND+L++ ++ESGK+ L E +D +++ Sbjct: 1348 LDSGVLREEPETVEHMLQIVLRNCDRLIRLVNDILNLERLESGKVQLIKEACEVDHLLTD 1407 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A+ V A E I I + + A ++ QI N+LSNAI F P G + ++ Sbjct: 1408 AVETVSAMAMEASINI--ELTSISAHVWASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQ 1465 Query: 731 HTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + V+ V+D G G+ +L F Q+ S + GTGLGL + + Sbjct: 1466 LFDDPDSTDRATSFVLFSVKDQGRGIPTNKLTTIFGRFQQVDASDARQKAGTGLGLAICQ 1525 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ + G+ ++ S +G+ PL Sbjct: 1526 SIIQQHNGRIWVDSILGEGSTFYFTLPL 1553 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 60/543 (11%), Positives = 164/543 (30%), Gaps = 44/543 (8%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 Q Q+S+ T + F I R N +G + E+++ + G Sbjct: 418 TASQLQQSLRRTETALKASQKKFTTIFRMSPDPIMINYCENGRILEVNDRFIEFSGYSYD 477 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 ++ G +++ ++ + + +LL++ T+ + G + L+A Sbjct: 478 ELTGHTPLELNLFPNVQQHRNFQELLQKIGFTYSQEIAFRVKSGE--VKTVLLSAENHCI 535 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 +E+ K KK + + + + D + + Sbjct: 536 EQQEYI----IVTFRDITESKQLELALKDSRKKLNQILDNTFASIFSFRLFDDQTWEYNY 591 Query: 231 -----------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 P M ++ + + + + +E++ + + F N Sbjct: 592 QSIGSLILFGYTPQEIMADQGLWASRIVPEDHETIILPLFERFKTEDT-ITVEYRFRHKN 650 Query: 280 LNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + + ++ + +++ + + + + + ++L + F+ Sbjct: 651 DSIRWIATTYTSYRDPTIDAWIVTGVSIDISDRKQIESELQQQKDLRESIFENSSDAIFL 710 Query: 336 YSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + + N + L + DD+ L +D + + Sbjct: 711 VDPQSSLIIDCNHRLVELFEVVCKDDLIDIEW--HTLQKQLFTDEEVEEIITQIEVKGF- 767 Query: 394 IAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + I + +T NQ + + + + + K++ Sbjct: 768 --WEKEIEYITFKGHEFWGNLTAKLIIVNNQIIHLVRV----TDITERKQAQIKLQKSEA 821 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + I++ ++ I+ +G L N A + F DI+ K + + + + Sbjct: 822 RYRGIVQDQTEFISRFLPDGTTLFVNEAYCRYFSINASDIIGKNYQPVIYEPDQEQVREQ 881 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568 + + + +E + ++ + I + L Y DI E K+ + Sbjct: 882 VNSLSKENPITLIENRIVV---NGEIRWTQWINRMLFDEQGNFIEYQSVGRDIQELKEAE 938 Query: 569 NKL 571 L Sbjct: 939 ALL 941 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 53/416 (12%), Positives = 127/416 (30%), Gaps = 21/416 (5%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 K KKF+ + + E + + + ++++ T Sbjct: 427 RRTETALKASQKKFTTIFRMSPDPIMINYCENGRILEVNDRFIEFSGYSYDELTGHTPLE 486 Query: 248 AHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYL 303 + ++ + LL + ++ F + T ++ + Sbjct: 487 LNLFPNVQQHRNFQELLQKIGFTYSQEIAFRVKSGEVKTVLLSAENHCIEQQEYIIVTFR 546 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPSFLLLTKYKSVD 358 L + + +D F + Y + L+L Y + Sbjct: 547 DITESKQLELALKDSRKKLNQILDNTFASIFSFRLFDDQTWEYNYQSIGSLILFGYTPQE 606 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 I GL P+ + + P+ I R + ++ + Sbjct: 607 -IMADQGLWASRIVPEDHETIIL-PLFERFKTEDTITVEYRF---RHKNDSIRWIATTYT 661 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILST 477 + + G+ + D + + +++ + SI E +SD I +++ + I+ Sbjct: 662 SYRDPTIDAWIVTGVSIDISDRKQIESELQQQKDLRESIFENSSDAIFLVDPQSSLIIDC 721 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N + +LF +D L Q I ++++ EK T + Sbjct: 722 NHRLVELFEVVCKDDLI-DIEWHTLQKQLFTDEEVEEIITQIEVKGFWEKEIEYITFKGH 780 Query: 538 LLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + K + ++ + DI+E KQ + KL ++ +++F++R Sbjct: 781 EFWGNLTAKLIIVNNQIIHLVRVTDITERKQAQIKLQKSEARYRGIVQDQTEFISR 836 >gi|298244840|ref|ZP_06968646.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552321|gb|EFH86186.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1110 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 115/771 (14%), Positives = 243/771 (31%), Gaps = 46/771 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + +S + W G+ + ++ ++ Sbjct: 365 TDIEDQKRAEQQLKESRENLRVLAETVP-QLVWATRPDGWSEYFNQRFCDYTHATWEQLY 423 Query: 115 GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + + + + + T LY A+P+ Sbjct: 424 GYGWRQFLHPDDYERTLAVREHAFRTGVPYE-VEFRLREGQTGLYHWFLARAMPMRDETG 482 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 + + FG K + L E V + Sbjct: 483 QIV--KWFGTCTDIDEQKQAEQQLKESRESLRVLAETVPQFVWVTRPDGLHEYVNQRWRD 540 Query: 231 ----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + L + + L + E+ + Sbjct: 541 YTGLTLEQMQSDRWAYLQFIHPEDRQRHRAHWQHALDTGIMYEHEERIKNGQTGEYRWFL 600 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNL 341 +++++ + ++ ++ + E + P + G Sbjct: 601 ARGMPVRDDAGQIVKWFGTCTDIEDQKRAEQQLKESEENWRVLAEMVPHFMWTALPSGQF 660 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y N + + ++ L P D N RL Sbjct: 661 EYFNQRWFDYIGLT-LKQLQNDRWAYLQLIHPDDRDGNRA-IWQHALDTGDMFEYEERLR 718 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 Q ++ + + G + D + + + + ++ + Sbjct: 719 NGQS--GEYHWFLLRAMPVRDEAGQIIKWFGTCTDIDDRKRAEEALRQSQERASILMNSN 776 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSL 519 GI +I E I+ N + GY ED+ + + E+ + Sbjct: 777 IIGIKVIEGE-QIVDANDTFMHMTGYTREDLRERHMNLLHMTAPEYLARTLEAHQELAAQ 835 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIA 578 EK + K+ L + + L ++ D S K+ + + Sbjct: 836 QSLTPYEKEYVC--KDGSRLPVLVGGIALEHHPRQAICFVLDNSARKELEQR-------- 885 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K DF++ SHE+R PLTA + + +++ G + ++ N + Sbjct: 886 ------KDDFISMASHELRNPLTA-LALHTNLLHRQLARHGTLDQAPALSGMETQINKIS 938 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +V +LLD+SK+++G++ E + LD + E +Q RIL+ + ++ L Sbjct: 939 RLVEELLDVSKMQAGRLEYREEMIDLDALLREIADTMQQTHPSHRILVGGAVRTSL---L 995 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD + Q+ +N+LSNAI ++P + + + + E V +RV+D G+G+ + +K + Sbjct: 996 ADRDRLGQVFINLLSNAIKYSPGAETVEMDLSAS-REMVTIRVQDHGLGIPREQCDKIFE 1054 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F + S+Q G G+GL + +V + G + S KG+ +IFP Sbjct: 1055 RFYRATGSRQRAIPGLGMGLYIVAEIVKHHGGSITVDSEVGKGSTFTVIFP 1105 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 52/543 (9%), Positives = 131/543 (24%), Gaps = 35/543 (6%) Query: 57 QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116 + E ++ P F +D + + G +++G Sbjct: 5 KPTERLTPALSETLLTLLETLPGAL---FV--VDDAATIVYANASAQTLTGATRGELLGK 59 Query: 117 R-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI--DLAALPIYSRNR 173 ++ I + + + P++ T L+V + + L + Sbjct: 60 PLWRGAPHLVSTVLYQAIQRTTQTRAP-TEVEYVSPVKETWLHVQLAPTVRGLIVQVHQG 118 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + P G+ L + + G + E +I Sbjct: 119 -----------RAAALREAPVPQGEYLSIEDLDGLYSRIGVLTPEGIVLEINEVPLAEAQ 167 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 +R + + ++ +S E F + + + Sbjct: 168 IRREEVLGYPLTETRWWSFYPTSQAQLRAAIARASRGETVRFEAVVHPREGMDCHLDVAI 227 Query: 294 NNSKESFEYLS-HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLL 351 + ++ +++ E +D P + G++ Y N Sbjct: 228 STRMDADHHIAYLVIAGIDITARKRAEAEIHAVIDAIPQLVWTGQPDGSIDYYNRRLCDY 287 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + + + G L L A RL Sbjct: 288 SGQSTEEA-QGEGWLQCLHPED---RQRVRSAWQRAVQTGGVYEAELRLRQSTT--GEYR 341 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 ++ + + G + D + +++++ L + E + + Sbjct: 342 WFLVRAMPVRDEAGQIVRWFGTCTDIEDQKRAEQQLKESRENLRVLAETVPQLVWATRPD 401 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G N+ E + + FL + + E Sbjct: 402 GWSEYFNQRFCDYTHATWEQLYGYGWRQFLHPDDYERTLAVREHAFRTGVP--YEVEFRL 459 Query: 532 STKE-EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + + + T DI E KQ + +L +++ + Sbjct: 460 REGQTGLYHWFLARAMPMRDETGQIVKWFGTCTDIDEQKQAEQQLKESRESLRVLAETVP 519 Query: 587 DFL 589 F+ Sbjct: 520 QFV 522 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 66/277 (23%), Gaps = 28/277 (10%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N ++ P FV + YAN S LT + + Sbjct: 1 MPNPKPTERLTPALSETLLTLLETLPGALFVVDDAATIVYANASAQTLTGATRGELLGKP 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P L + + R + Sbjct: 61 LWRGA----PHLVSTVLYQAIQRTTQTRAPTEVEYVSPV------KETWLHVQLAPTVRG 110 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + Q + IE L+ I ++ EGI+L N Sbjct: 111 LIVQVHQGRAAALREAPVPQGEYLSIED------LDGLYSRIGVLTPEGIVLEINEVPLA 164 Query: 484 LFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 E++L P + + + + +T+ + +E Sbjct: 165 EAQIRREEVLGYPLTETRWWSFYPTSQAQLRAAIARASRG---ETVRFEAVVHPREGMDC 221 Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLS 572 L + I + + + DI+ K+ + ++ Sbjct: 222 HLDVAISTRMDADHHIAYLVIAGIDITARKRAEAEIH 258 >gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 625 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 122/528 (23%), Positives = 223/528 (42%), Gaps = 26/528 (4%) Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFV-YSHGNLFY 343 L + Y+ + + + +L + + V G + Y Sbjct: 111 ISPLFTEKSRIYGYMGIIRDITEEKQNEDSLVKELDLLTGLIGTARVIVTVLDRQGKIVY 170 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 NP +T YK + +I+ S + + + I+ V ++ I Sbjct: 171 CNPHTEKITGYK-LKEIKGDDWFSRFIP---VREKERIRSVFKKAICGH--PTKGNVNPI 224 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + + N E I + + +L +I E Sbjct: 225 DTKEGKEIIVEWYDTALKNDEGEVTGLLSIGNDITQRVEAE-------EKLKTIYENMPG 277 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GI +I ++ II N ++ GY E+++ + + + + S + Sbjct: 278 GILMIGQDYIIKDVNYRTCEITGYKREELVGQLCDIVCPKGSSSKQCPIWE----DGQEE 333 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 T K + +++ + DIS+ K + AKK AE+ Sbjct: 334 FRGMDTSIKCKNGIKKPILKNAQEITIKGDTYILELFQDISQRKNAEENAIEAKKAAEQA 393 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA +SHE+RTPL ++IGFS+++ + G L N +Y + I +SG+ +L ++ Sbjct: 394 NQTKSEFLANMSHELRTPLNSVIGFSDILSKEVRGKL-NDSQKKYVSNITKSGSHLLSLI 452 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD+SKIE+G+ L + L EA+ E L++ ++K I ++ R+ AD Sbjct: 453 NDILDLSKIEAGQKQLEYSSFDLHEALDEISILIKPLISKKNIDLQMDLPPEDSRVYADR 512 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + KQI N+LSNA FTP G I I + +++ + V+DTG+G+ + +PF Sbjct: 513 KKFKQIMYNLLSNASKFTPDKGTITI-VANQEKDKLKVAVQDTGMGIPEADQATIFEPFQ 571 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ +++ +GTGLGL LA+ +V+ + G+ + S G+ P Sbjct: 572 QVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLKSEVGMGSTFTFTIP 619 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 26/262 (9%), Positives = 75/262 (28%), Gaps = 11/262 (4%) Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + + + + + + N S + + + G + + Sbjct: 19 SKIFADMIQHSTDAIIYTTPDFTINFVNRSAEEMFGWT----LPEIKGKPITILHDQELT 74 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + K + A + + + GI + Sbjct: 75 SQQKKEMFSNLYSGK--AHEIEGSRKRKDGSTFYCQ-IKISPLFTEKSRIYGYMGIIRDI 131 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496 + + N+ + E+ L ++ + +++R+G I+ N K+ GY +++I Sbjct: 132 TEEKQNEDSLVKELDLLTGLIGTARVIVTVLDRQGKIVYCNPHTEKITGYKLKEIKGDDW 191 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554 F+ F+ + + + + +E ++ K Sbjct: 192 FSRFIPVREKERIRSVFKKAICGHPTKGNVNPIDTKEGKEIIVEWYDTALKNDEGEVTGL 251 Query: 555 SLTMHDISEWKQEKNKLSHAKK 576 +DI++ + + KL + Sbjct: 252 LSIGNDITQRVEAEEKLKTIYE 273 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 36/387 (9%), Positives = 98/387 (25%), Gaps = 25/387 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTT 148 + ++ + G ++ G + + + + L + + Sbjct: 38 PDFTINFVNRSAEEMFGWTLPEIKGKPIT-ILHDQELTSQQKKEMFSNLYSGKAHEIEGS 96 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ Y I ++ P+++ G+ G I+ + + + L Sbjct: 97 RKRKDGSTFYCQIKIS--PLFTEKSRIYGYMG--IIRDITEEKQNEDSLVKELDLLTGLI 152 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR-----MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + +V + I + + + ++ + Sbjct: 153 GTARVIVTVLDRQGKIVYCNPHTEKITGYKLKEIKGDDWFSRFIPVREKERIRSVFKKAI 212 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + T + + Y L+N+ E LS N + +E Sbjct: 213 CGHPTKGNVNPIDTKEGKEIIVEWYDTALKNDEGEVTGLLSIGNDITQRVEAEE---KLK 269 Query: 324 ETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEI------AGGLSTLLDAPKLS 376 + P + + N +T YK + + G S+ Sbjct: 270 TIYENMPGGILMIGQDYIIKDVNYRTCEITGYKREELVGQLCDIVCPKGSSSKQCPIWED 329 Query: 377 DNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + I + + F + EN + Sbjct: 330 GQEEFRGMDTSIKCKNGIKKPILKNAQEITIKGDTYILELFQDISQRKNAEENAIEAKKA 389 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461 E + ++ + +L + L + Sbjct: 390 AEQANQTKSEF-LANMSHELRTPLNSV 415 >gi|307152832|ref|YP_003888216.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983060|gb|ADN14941.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1214 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 115/855 (13%), Positives = 262/855 (30%), Gaps = 112/855 (13%) Query: 28 KKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW 87 K + +G + + + + T + Sbjct: 397 KTLSDGRRVRITMALDVTQRKEAEMALQASEARYATLTELAPVG--------------IF 442 Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGK 146 + D+ G I++ G + +G + + +Y + Sbjct: 443 HTDSEGNCIYINQHWCAITGLSTAEAMGTGWLKALHSEDQQRVTATWIRAVAKNTAFYLE 502 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + A+P + + E G+ G + + + +++F Sbjct: 503 YRFQNPNGKI--TWVVGQAIPQITPSGEVLGY--IGTITDISTLKEAELALSQSEERFRQ 558 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ E + + + + + Y ++ Sbjct: 559 AVLNAPVPIAIHAEDGTVLQISRAWSDITGYTLEDIPTVADWIEKAYRTNQQKIQANVER 618 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L E + T N + Y L S +S + + Sbjct: 619 LYGLTEPIAEGEYIITTKNGVTRIWEFYSTGLGRLSDGRRTVISTALDVTERKKVELQLK 678 Query: 321 LTPE---------------------------------TVDKCPIPFFVYSH-------GN 340 + ++ + + G Sbjct: 679 QAKQNLEIRVAARTTELQQANEQLLQELSEKLQTQKILAEQAQLLDLAHDTILTRDLEGT 738 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + N + + S++ + + P+ + + Sbjct: 739 ILFWNQGAEKMYGFSSLEAVGQHSNVLLNTVFPEPYSQILSQLFAQDYWEGELRH----- 793 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 Q + + + ++ I + + + ++ + S+ E+ Sbjct: 794 ---QKLDGTEIIVASRWVLQRDKAGNPSKILEINNDITLRKRAEEALQDNEAKFRSLSES 850 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSL 519 + GI + + G +L TN ++ G E++L + + F+ +++ +LT + Sbjct: 851 SPIGIFLTDTHGRVLYTNPRYQEIVGGTAEEVLGEGWKQFIHPEDLENIVSEWLTHLEKQ 910 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI 577 + E + + + T+ DI+E + + Sbjct: 911 KNSFYPQVRYCHKNTEIRYTQVHTAAIFTERGQLTGFVGTVEDITERRLIE--------- 961 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 K DF++ VSHE+R PLTAI G ++ + + + + Sbjct: 962 -----QMKKDFISVVSHELRIPLTAIHGSLGLLAAGVYDNKP-EKGKKMLQIAATQTERL 1015 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 + +VND+LD+ ++ESGK++L +P + + + +A L++ A E +I + S ++ Sbjct: 1016 VKLVNDILDLGRLESGKLHLVIQPCEVAQLLEQAAELMRPKAAENQITL--SVTPIDVQV 1073 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------------------EVI 738 AD S+ Q N+LSNAI F+ I ++ S+ V+ Sbjct: 1074 WADFDSIMQTLTNLLSNAIKFSLPKSTISVNAELISSHDKIAIWQQKRPSLASLSVPYVL 1133 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V+D G G+ +LE + F Q+ + G GLGL + + +++ G+ + S Sbjct: 1134 FQVKDQGRGIPRNQLELIFEKFQQVDATDSRDKGGAGLGLAICRLIIEQQGGQIWAESVL 1193 Query: 799 AKGTLIEIIFPLYDT 813 +G+ LY+T Sbjct: 1194 GEGSSFYFTLQLYET 1208 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 57/464 (12%), Positives = 117/464 (25%), Gaps = 36/464 (7%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS------------QQSPPPH 233 L + +++F + E +I Q P Sbjct: 284 EIEDRKQLEQLLRESEERFRQAIYEAPLPILIHAEDGEILQINWAWSEISGYQPQEIPTL 343 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 KV + + E +L ++ I + Sbjct: 344 SAWVQKVYGDNYERFRNYIRQLFQLNQRVNEGEHTLINRQGKTLIWDYYSAPLKTLSD-- 401 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352 L E + P+ F GN Y N + +T Sbjct: 402 GRRVRITMALDVTQRKEAEMALQASEARYATLTELAPVGIFHTDSEGNCIYINQHWCAIT 461 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + + G L L + + + T R Sbjct: 462 GLSTAEAM-GTGWLKALHSEDQ---QRVTATWIRAVAKNTAFYLEYRFQN---PNGKITW 514 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + E + G + + + + + + IAI +G Sbjct: 515 VVGQAIPQITPSGEVLGYIGTITDISTLKEAELALSQSEERFRQAVLNAPVPIAIHAEDG 574 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 +L +RA S + GY +EDI + T E L E + + Sbjct: 575 TVLQISRAWSDITGYTLEDIPTVADWIEKAYRTNQQKIQANVERLYGLTEPIAEGEYIIT 634 Query: 533 TKEE--KLLSLRII-IKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 TK ++ + +L + T D++E K+ + +L AK+ E + ++ Sbjct: 635 TKNGVTRIWEFYSTGLGRLSDGRRTVISTALDVTERKKVELQLKQAKQNLEIRVAARTT- 693 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 E++ A + + + + + Sbjct: 694 ------ELQQ---ANEQLLQELSEKLQTQKILAEQAQLLDLAHD 728 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 37/320 (11%), Positives = 96/320 (30%), Gaps = 13/320 (4%) Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + +ED N + Q + E + L E E + + Sbjct: 248 ARYQAEEDLQQTNEQLEARIQQRTAQLTQLNINLEN-EIEDRKQLEQLLRESEERFRQAI 306 Query: 327 DKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + P+P ++ G + N ++ ++ Y+ + ++ + + N I+ + Sbjct: 307 YEAPLPILIHAEDGEILQINWAWSEISGYQPQEIPTLSAWVQKVYGDNYERFRNYIRQLF 366 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + HT+ + +L + + + + + + Sbjct: 367 QLNQR-----VNEGEHTLINRQGKTLIWDYYSAPLKTLSDGRRVRITMALDVTQRKEAEM 421 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ + ++ E GI + EG + N+ + G + + + L Sbjct: 422 ALQASEARYATLTELAPVGIFHTDSEGNCIYINQHWCAITGLSTAEAMGTGWLKALHSED 481 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDI 561 + ++ + L K+ + I Y T+ DI Sbjct: 482 QQRVTATWIRAVAKNTAFYL--EYRFQNPNGKITWVVGQAIPQITPSGEVLGYIGTITDI 539 Query: 562 SEWKQEKNKLSHAKKIAEKE 581 S K+ + LS +++ + Sbjct: 540 STLKEAELALSQSEERFRQA 559 >gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 785 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 138/766 (18%), Positives = 279/766 (36%), Gaps = 68/766 (8%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G L + + + IG + GM ++ + I + + + Sbjct: 31 GRLLDANPRACELIGRTRDAIRGMHHLELHPREERERYRAIFEHRAEAGRGIDRAEVVHR 90 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +GT +P++++A +R GI R ++ + + L E Sbjct: 91 DGT--RIPVEISAARTTLGDRPVL----IGIFRDLRPRHELEQKLHEAESHYRILAEQNL 144 Query: 213 G---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEES 267 + Y + R ++ + H +D + L+ E Sbjct: 145 IGVYLVQDGRFVYVNQYIADFLGYERPEDLIGRSLVELVHPEDLPAVTANIQKRLSGEMR 204 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 ++ + + L + +++ + + Sbjct: 205 TVHYSLRGFHRQGYLVEVEVIGSATTYRGRPAVLGVMLHTSEARRQARFYETESRILQDL 264 Query: 326 VDKCPIPFFVY----------------------------------SHGNLFYANPSFLLL 351 + P + + L + Sbjct: 265 LRGAPQAALLDALCTAIEARLPDGICTILLLCEGRLYRGASHMPPEYDALIEGLEIGPEV 324 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + +S + P+ + A+ +R+ C + R + ++ Sbjct: 325 GSCGTAAFTKQPVWVSDVFSDPRWAAYRALAERFNFRA---CWSYPIRNARGEVLGTFAV 381 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + ++ + ++TR ++ E +L + TS G+ I + E Sbjct: 382 YFPTERAPEPHEKEVLTRGASLAALILETRR----LQTENARLAEVARQTSTGVLITDPE 437 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITL 530 +L N ++L GY + D+ + FL + E L L + Sbjct: 438 RRVLWLNEGFTRLTGYTLADVYGRRPPEFLAGERTDRNTLEIIGERLREGLP--VHTRIY 495 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ + I+ L + + HDI+ + + +L A+ AE + K+ Sbjct: 496 FYRKDGTGFWDELRIEPLRDAEGRLIGFMGLNHDITALVEYEQELKRARAEAETAARLKA 555 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHEIRTPL +I+GF+E + +++ G E+ I RSG +L ++ND+L+ Sbjct: 556 AFLANMSHEIRTPLNSILGFAE-LLDEQLAASGQESLREFTGIIQRSGRRLLRLINDILE 614 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +S++E+ ++ L EP +L V EA++ ++ A +K + + +P +L D + Q Sbjct: 615 LSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVH-TEAVPPVLGDPHRLHQ 673 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQI 763 I N++ NA+ +T G ++ + T+ + +V+LRV DTG G+ L +PF + Sbjct: 674 IVTNLVGNALKYTEQG-EVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQRA 732 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S+ R EG+GLGL + K +V+ G+ + S P GT + FP Sbjct: 733 -PSENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFP 777 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 78/277 (28%), Gaps = 17/277 (6%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 SA + + ++ F+ G L ANP L G+ L Sbjct: 2 SAPAELLPDFYRILFEEANDAIFLADVETGRLLDANPRACELIGRTRDA----IRGMHHL 57 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P+ I R + + + + Sbjct: 58 ELHPREERERYRAIFEHRAEAGRGID---RAEVVHRDGTR---IPVEISAARTTLGDRPV 111 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP- 488 GI + ++K+ + E G+ ++ ++G + N+ ++ GY Sbjct: 112 LIGIFRDLRPRHELEQKLHEAESHYRILAEQNLIGVYLV-QDGRFVYVNQYIADFLGYER 170 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIK 546 ED++ + + + + + LS +T+ G ++ L+ + + Sbjct: 171 PEDLIGRSLVELVHPEDLPAVTANIQKRLS-GEMRTVHYSLRGFHRQGYLVEVEVIGSAT 229 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 M SE +++ +I + Sbjct: 230 TYRGRPAVLGVMLHTSEARRQARFYETESRILQDLLR 266 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 7/289 (2%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97 +++ H+ + + T L +EN + + +T D + Sbjct: 384 PTERAPEPHEKEVLTRGASL-AALILETRRLQTENARLAEVARQTSTGVLITDPERRVLW 442 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGT 155 ++E + G + G R + D N IG+ L+ + + + +GT Sbjct: 443 LNEGFTRLTGYTLADVYGRRPPEFLAGERTDRNTLEIIGERLREGLPVHTRIYFYRKDGT 502 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 +L P+ GF G H + KR + +K Sbjct: 503 GF--WDELRIEPLRDAEGRLIGFMGLN--HDITALVEYEQELKRARAEAETAARLKAAFL 558 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 + + + ++++ + + + L + + E Sbjct: 559 ANMSHEIRTPLNSILGFAELLDEQLAASGQESLREFTGIIQRSGRRLLRLINDILELSRL 618 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L T+ T+ + E L+ + +L+ + + + + Sbjct: 619 EADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEAVPPVLGD 667 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 32/400 (8%), Positives = 94/400 (23%), Gaps = 53/400 (13%) Query: 92 HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G +++ + +G +IG L ++ + + ++++ + +T + Sbjct: 152 DGRFVYVNQYIADFLGYERPEDLIGRSLVELVHPEDL---PAVTANIQKRLSGEMRTVHY 208 Query: 151 -----PIEGTNLYVPIDLAALPIYSRNREFSGF---------------RGFGIVHVNRVD 190 +G + V + +A R G I+ Sbjct: 209 SLRGFHRQGYLVEVEVIGSATTYRGRP-AVLGVMLHTSEARRQARFYETESRILQDLLRG 267 Query: 191 NDPRALGKRL-------------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 AL L + + E +I + Sbjct: 268 APQAALLDALCTAIEARLPDGICTILLLCEGRLYRGASHMPPEYDALIEGLEIGPEVGSC 327 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFG 290 + +++ ++ S P + + Sbjct: 328 GTAAFTKQPVWVSDVFSDPRWAAYRALAERFNFRACWSYPIRNARGEVLGTFAVYFPTER 387 Query: 291 TLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348 + + + S + E + + + + N F Sbjct: 388 APEPHEKEVLTRGASLAALILETRRLQTENARLAEVARQTSTGVLITDPERRVLWLNEGF 447 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 LT Y D A + +D N ++ + + + R++ + + Sbjct: 448 TRLTGYTLADVYGRRPPE---FLAGERTDRNTLEIIGERLREG--LPVHTRIYFYRKDGT 502 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + + G+ + +++++ Sbjct: 503 GFWD-ELRIEPLRDAEGRLIGFMGLNHDITALVEYEQELK 541 >gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 975 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 136/745 (18%), Positives = 261/745 (35%), Gaps = 44/745 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D L ++ + + ++I G D+ D + R Sbjct: 228 DPRERLVTANDLYRQFM-APVAEIIKPGRLFQDIVDAEFEMGVVRQECEVVRSGKLADHA 286 Query: 148 TLWPIEGTNLYV----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 ++G + + + P G+ I+ A Sbjct: 287 VP-AVQGCEAELFDGRWVSINVYPTAD-----GGY--LRILRDVTARRQVTASLHDSVTW 338 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS-----LTEYYAHKDDVLK 255 + + I S + V + E Y + D Sbjct: 339 LRGIMNTVVDGIITIDDTASILSFNAAAERIFGYGADETVGRNVSMLMPEPYHSEHDDYM 398 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSA 313 + + Q + + + + + + Sbjct: 399 RRYAETGEARVIGIGRQVKGKRKDGTVFPLELAVTRMNQGGLITYIGLVRDITDRKRVED 458 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E E + + F+ + + + + + Sbjct: 459 ALVESEQRFRDLAESASDWFWELDADLRFTFVSGRVRQVLG------VGPGYFIGRPFSD 512 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 S + + R + + + + G Sbjct: 513 LATSCEDPRDWDVQQSLIRGRRPFRGFIFVHPMPSGAVKFVEMAGRPAFDADGKFDGYRG 572 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + +++++ + +I++ G+ + + + +++ N +L P +I Sbjct: 573 TAADITPLKRHEQELATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEI 632 Query: 493 LRKP------FTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRII 544 Q + ++ LR+ ++ + +L +R Sbjct: 633 ETGTSNLEALLLYLAVQGEFGHSGAIMVKVQRRLARLRRDPRRVFEHARPNGSVLEIRST 692 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 LT DI++ K+ + L A+ AE+ + K+ FLA +SHE+RTPL AII Sbjct: 693 AMP---GGGLILTFTDITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAII 749 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++K++ FGPL P Y Y + + SG +L+++ND+LD+SK E+G +L PV + Sbjct: 750 GFSELMKHEIFGPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDV 809 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 V ++ ++ A+ I + + + + AD R ++QI LN+LSNA+ FT GG Sbjct: 810 AAVVRASLRMMDKRASANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGGM 869 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ V + V DTG+GMT +++K M+PF Q + EGTGLGLPL KA+ Sbjct: 870 VRVTAQVDGRGMV-IEVIDTGIGMTPEDMDKVMEPFVQADTRLSRKYEGTGLGLPLTKAL 928 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+A+ G + S P GT + + FP Sbjct: 929 VNAHGGTMELHSIPDHGTTVTVTFP 953 Score = 81.2 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 36/379 (9%), Positives = 76/379 (20%), Gaps = 25/379 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIGDLLKRQNTWY 144 ID + + + G A + +G + + H D + + + Sbjct: 353 IDDTASILSFNAAAERIFGYGADETVGRNVSMLMPEPYHSEHDDYMRRYAETGEARVIGI 412 Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G+ +GT P++LA + G+V +++ Sbjct: 413 GRQVKGKRKDGT--VFPLELAVT--RMNQGGLITY--IGLVRDITDRKRVEDALVESEQR 466 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSLTEYYAHKDDVL 254 F L E P + + + DV Sbjct: 467 FRDLAESASDWFWELDADLRFTFVSGRVRQVLGVGPGYFIGRPFSDLATSCEDPRDWDVQ 526 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 ++ + + + F Sbjct: 527 QSLIRGRRPFRGFIFVHPMPSGAVKFVEMAGRPAFDADGKFDGYRGTAADITPLKRHEQE 586 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + +D V+ L N L + L LL Sbjct: 587 LATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEIETGTSNLEALLLYL 646 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ + R ARL E + Sbjct: 647 AVQGEFGHSGAIMVKVQRRL----ARLRRDPRRVFEHARPNGSVLEIRSTAMPGGGLILT 702 Query: 434 EPEDVDTRINKRKMEIEVM 452 + D + + + Sbjct: 703 FTDITDRKKVEVTLREARD 721 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 42/423 (9%), Positives = 106/423 (25%), Gaps = 21/423 (4%) Query: 66 NYLDSENTFVF-DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD- 123 E+ F D + W +DA +S + + +G IG D++ Sbjct: 457 EDALVESEQRFRDLAESASDWFWELDADLRFTFVSGRVRQVLGVGPGYFIGRPFSDLATS 516 Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + L++ + + G + P+ + +++A P + + +F G+RG Sbjct: 517 CEDPRDWDVQQSLIRGRRPFRGFIFVHPMP-SGAVKFVEMAGRPAFDADGKFDGYRG--T 573 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + + V + + S L + Sbjct: 574 AADITPLKRHEQELATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEIE 633 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 T + +L + + + + + + E Sbjct: 634 TGTSNLEALLLYLAVQGEFGHSGAIMVKVQRRLARLRRDPRRVFEHARPNGSVLEIRSTA 693 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 L+ T+ + A +FL ++ + Sbjct: 694 MPGGGLILTFTDITDRKKVEVTLREARDA-----AERGNRAKATFLANISHELRTPLNAI 748 Query: 364 GGLSTL----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 G S L + P ++ S + + + + P + Sbjct: 749 IGFSELMKHEIFGPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVD 808 Query: 420 KANQFPENMPQNGIEPEDVDTRINK------RKMEIEVMQLCSI-LEATSDGIAIINREG 472 A ++ + + + ++ I L S+ + + G Sbjct: 809 VAAVVRASLRMMDKRASANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGG 868 Query: 473 IIL 475 ++ Sbjct: 869 MVR 871 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 42/153 (27%), Gaps = 13/153 (8%) Query: 430 QNGIEPEDVDTRINKRKMEIEVM-----QLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + E + + + E + +L L + DG+A+ + +++ N + Sbjct: 184 ALALLLEVLMRQQAVAESEGQRANLLQSRLVDALSSVQDGVALFDPRERLVTANDLYRQF 243 Query: 485 FG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + + E + D + + + + Sbjct: 244 MAPVAEIIKPGRLFQDIVDAEFEMGVVRQECEVVRSGKLADHAVPAVQGCEAELFDGRWV 303 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 S+ + Y + D++ +Q L Sbjct: 304 SINVYPT---ADGGYLRILRDVTARRQVTASLH 333 >gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS] Length = 1313 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 138/784 (17%), Positives = 268/784 (34%), Gaps = 85/784 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLL--KRQNTWYGK 146 D + + K G + IG ++ + L ++ T + Sbjct: 313 DMDFKVVAWNPAAEKIFGYSQQEAIGHHANELVVPPSAQHLVKQVWHDLINQQGGTHFTN 372 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L T + P+ + G +V + + Sbjct: 373 NNLTKAGNTISCEWYN---TPLIDKKGHVIGVA--SLVQDITERRQTEEALRLTQFTVDN 427 Query: 207 LHEI-----KKGHSSVEKEKY---------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + K GH E+ ++ + ++ + Sbjct: 428 ASDAIFWLGKNGHFIYANEETYHCLGYSREELLNMTLSDIETDFPAQLWDEHWEVLQELG 487 Query: 253 ------------------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 L + +E L ++ N + +K L+ Sbjct: 488 SIVLQTDYHRKDGSQFPVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNH-LEE 546 Query: 295 NSKESFEYLS------------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341 E E L+ + +E V++ + G + Sbjct: 547 LVTERTEELANVNLQLQNVNLQLQQDILERKRVEEELRKFSRAVEQSANTIVITDLDGKI 606 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + NP+F + T Y + I G + + + + + L Sbjct: 607 EFVNPTFSIKTGYSYEEAI----GKNPRILKSGKHPIEFYENLWATITQGNVWQGE--LL 660 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + N + I ++ + I+ + + + + + +++ Sbjct: 661 NKRKNGDLFWEFATISV-LKDRTGQKTHFLAIKEDITERKKAEEALRT----YQFVVDHA 715 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S I +++EG N A + GY + +L T + + + ++L Sbjct: 716 SIQIFWVSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDINPDISSETWDIHWQKLLQTQK 775 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAE 579 QT + + + + + L F + DISE K+ + L AK++AE Sbjct: 776 IQT---ESHHQNQAGNIYPIELNANYLEFQGKAFSISFVQDISERKRAEKALLEAKEVAE 832 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS FLA +SHE+RTPL I+G++++ + E I RSG +L Sbjct: 833 SANQAKSTFLASMSHELRTPLNGILGYTQIF---NHDKSLTEKQQEGIQIIQRSGEHLLT 889 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD+SKIESGK+ L + + L ++ A +K + + +P + Sbjct: 890 LINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMRAEQKNVEFIYEPLSQLPTAVY 949 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------TSNEEVILRVRDTGVGMT 749 AD + ++Q+ LN+LSNA+ FT G Q+ + + + V D G G+ Sbjct: 950 ADEKRLRQVLLNLLSNAVKFTQEG-QVSFKVIYQSVPAPSTEENKNTIRFEVEDAGQGIA 1008 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +LE+ PF Q+ Q + EGTGLGLP++K +V+ G+ + S G++ P Sbjct: 1009 PDDLERIFLPFQQV-GDQSEQVEGTGLGLPISKKLVEMMAGQLQMQSMLGVGSIFWFEIP 1067 Query: 810 LYDT 813 L ++ Sbjct: 1068 LPES 1071 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 72/597 (12%), Positives = 164/597 (27%), Gaps = 63/597 (10%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E + + + + +++ +S + R Sbjct: 139 LEHTNADLKQEIAERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAA--------- 189 Query: 94 YLKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149 +S+ G + ++I L D+ + + I L+ + ++ + Sbjct: 190 --TFVSQGCYDLTGYQSDELINHTKMTLADLVHPKDYERIYHEIQIALQERRSFQLTYRI 247 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + G +V ++S + GF V + +K S + Sbjct: 248 YCQNGKQKWVWEQ--GQGVFSEQGDVLSLEGF--VKDITEQKQAEEALRESQQKLSLHIQ 303 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTS 264 + + + + ++ + L + + L + Sbjct: 304 HTPFGVIEWDMDFKVVAWNPAAEKIFGYSQQEAIGHHANELVVPPSAQHLVKQVWHDLIN 363 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 ++ + T N + + Y L + S + +E LT Sbjct: 364 QQGGTHFTNNNLTKAGNTISCEWYNTPLIDKKGHVIGVASLVQDITERRQTEEALRLTQF 423 Query: 325 TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDI------EIAGGLSTLLDAPKLSD 377 TVD ++ +G+ YAN Y + + + L D Sbjct: 424 TVDNASDAIFWLGKNGHFIYANEETYHCLGYSREELLNMTLSDIETDFPAQLWDEHWEVL 483 Query: 378 NNAIKPVMLY---RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-----P 429 V+ R D + + Q+N L ++ + E + Sbjct: 484 QELGSIVLQTDYHRKDGSQFPVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNH 543 Query: 430 QNGIEPEDVDT------------------RINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + E + + ++++E E+ + +E +++ I I + + Sbjct: 544 LEELVTERTEELANVNLQLQNVNLQLQQDILERKRVEEELRKFSRAVEQSANTIVITDLD 603 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N S GY E+ + K + P L ++ + L Sbjct: 604 GKIEFVNPTFSIKTGYSYEEAIGKNPRILKSGKHPIEFYENLWATITQGN--VWQGELLN 661 Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 K L I L + + DI+E K+ + L + + + S Sbjct: 662 KRKNGDLFWEFATISVLKDRTGQKTHFLAIKEDITERKKAEEALRTYQFVVDHASIQ 718 Score = 137 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 132/476 (27%), Gaps = 37/476 (7%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-- 242 ++ ++ S L G + + + S Sbjct: 148 QEIAERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAATFVSQGCYDLTGYQSDEL 207 Query: 243 -------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 L + KD + + E S + N Q + + + Sbjct: 208 INHTKMTLADLVHPKDYERIYHEIQIALQERRSFQLTYRIYCQNGKQKWVWEQGQGVFSE 267 Query: 296 SKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL 350 + + E + + P + + NP+ Sbjct: 268 QGDVLSLEGFVKDITEQKQAEEALRESQQKLSLHIQHTPFGVIEWDMDFKVVAWNPAAEK 327 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I + L+ P L + + Sbjct: 328 IFGYSQQEAIGH--HANELVVPPSAQHLVKQVWHDLINQQGGT---HFTNNNLTKAGNTI 382 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + ++ + + + + R + + + ++ SD I + + Sbjct: 383 SCEWYN-TPLIDKKGHVIGVASLVQDITERRQTEEALRLT----QFTVDNASDAIFWLGK 437 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 G + N GY E++L + + + + + L ++ T Sbjct: 438 NGHFIYANEETYHCLGYSREELLNMTLSDIETDFPAQLWDEHWEVLQELG---SIVLQTD 494 Query: 531 GSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 K+ + + + + L++ DI+E + + +L + E+ + +++ Sbjct: 495 YHRKDGSQFPVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNHLEELVTERTEE 554 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 LA V+ +++ + + I ++ +++ +++S N + ++ DL Sbjct: 555 LANVNLQLQN---VNLQLQQDILERKRV---EEELRKFSRAVEQSANTI--VITDL 602 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 48/419 (11%), Positives = 128/419 (30%), Gaps = 25/419 (5%) Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 G GF + + + + + + + K +++ + ++ Sbjct: 28 PGMDGFETCRWLKANEESKEIPVIFMSALNDTVDKVK--------GFELGAVDYITKPVQ 79 Query: 236 MKNKVSSLTEYYA--HKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTL 292 ++ ++ L + + LK + L + ++ N + K L Sbjct: 80 VEEVLARLKTHLTLCELQNRLKEQNIQLKQEIDKRQQAEDALQQSNNQLEKIVKARTAEL 139 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFL 349 ++ + + + ++ + E L + P + S+ + + Sbjct: 140 EHTNADLKQEIA--ERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAATFVSQGCY 197 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 LT Y+S + I L PK + + + +R + R I Sbjct: 198 DLTGYQSDELINHTKMTLADLVHPKDYE-RIYHEIQIALQERRSFQLTYR---IYCQNGK 253 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + ++ + + G + + + + + +L ++ T G+ + Sbjct: 254 QKWVWEQGQGVFSEQGDVLSLEGFVKDITEQKQAEEALRESQQKLSLHIQHTPFGVIEWD 313 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + +++ N A K+FGY ++ + + + + + L T Sbjct: 314 MDFKVVAWNPAAEKIFGYSQQEAIGHHANELVVPPSAQHLVKQVWHDLINQQGGT-HFTN 372 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584 TK +S L + + + DI+E +Q + L + + S Sbjct: 373 NNLTKAGNTISCEWYNTPLIDKKGHVIGVASLVQDITERRQTEEALRLTQFTVDNASDA 431 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 25/249 (10%), Positives = 61/249 (24%), Gaps = 16/249 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145 D G ++ ++ G + IG + + ++ + + N W G Sbjct: 600 TDLDGKIEFVNPTFSIKTGYSYEEAIGKNPRILKSGKHPIEF--YENLWATITQGNVWQG 657 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G + ++ L R + + F I + Sbjct: 658 ELLNKRKNGDLFWEFATISVL--KDRTGQKTHF--LAIKEDITERKKAEEALRTYQF--- 710 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + ++ + + K K+ S+T + D +T Sbjct: 711 -VVDHASIQIFWVSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDINPDISSETWDIHWQK 769 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 ++ Q + H N + +S S ++ Sbjct: 770 LLQTQ-KIQTESHHQNQAGNIYPIELNANYLEFQGKAFSISFVQDISERKRAEKALLEAK 828 Query: 324 ETVDKCPIP 332 E + Sbjct: 829 EVAESANQA 837 Score = 46.2 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 8/195 (4%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 ++ T+ F +++ W + G ++E +T+G K++ M + D++ + + Sbjct: 703 EALRTYQFVVDHASIQIFW-VSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDINPDISSE 761 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 + L + ++ G + ++ L + S V Sbjct: 762 TWDIHWQKLLQTQKIQTESHHQNQAGNIYPIELNANYLEFQGKAFSIS------FVQDIS 815 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + ++ K + + + ++ N SLTE Sbjct: 816 ERKRAEKALLEAKEVAESANQAKSTFLASMSHELRT-PLNGILGYTQIFNHDKSLTEKQQ 874 Query: 249 HKDDVLKTEKYPLLT 263 +++ LLT Sbjct: 875 EGIQIIQRSGEHLLT 889 >gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 1109 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 125/745 (16%), Positives = 249/745 (33%), Gaps = 40/745 (5%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G ++ + + +IG R + + L + I Sbjct: 359 GVIEFANNRMADMFTLPLNDLIGTRYVERLHPSERQIGDERMRQLIKGEIRSVTLDRHYI 418 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 L+ + + G++ + ++ + Sbjct: 419 RADGTDFWGHLSGSRMEHADGSLKSL--VGVISDITHRKQAEDTLREMEATAQAAKRHLE 476 Query: 213 GHSSVEKEKY--------DIFSQQSPPPHLRMKNKVSSLTEYYAH--KDDVLKTEKYPLL 262 + + + ++ S E + + D Sbjct: 477 EAQRIAHLGSWQLNIVSNQLVWSKECYAIFGIQQDTSLTFESFVNCIHPDDRDLVSTAWS 536 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ + + + + + +N+ + + + D Sbjct: 537 SALTGAPYDITHRICVGDKVKWVVEQADIVFDNNGNALHGVGTVQDITERKETDNALREA 596 Query: 323 PE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E ++ + F+ + G++ N + + Y V DIE + P Sbjct: 597 KERFQFVIEGSQLGFWDWDIATGSVIR-NERWAEMLGYT-VQDIENSVRQWIDYIHPDDR 654 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D D A + + + + + + G + Sbjct: 655 DPAMQSLQD--HLDGKTEMHKAEYRMLTKAGQYRWILDQAKIVSRDSHGKPLRMCGTHTD 712 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGI---AIINREGI--ILSTNRAVSKLFGYPVED 491 + + ++ + ++++ + + + EG +RAV +L VE+ Sbjct: 713 ITERKQILNALQESEERYRNLVDNLQNVVVYQITGDLEGNRKFAYISRAVERLNEITVEE 772 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 +L ++ + L E+ ++ L + + Sbjct: 773 VLTDANVIYRQILPQYHDELQLKEVEAISNHAPLHIEVQSLLPSGIVKWFEFTVSPRIRH 832 Query: 552 SCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+ KQ + +L AK A+ + KS+FLA +SHEIRTP+ ++G + Sbjct: 833 DGQIIWDGVEVDITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTH 892 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ P +Y I+ S N + +++D+LD+SKIESGKM L SL + Sbjct: 893 LLRTTDLTP----EQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCI 948 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + +S Q + +K I + T A+ +P ++ D +QI LNIL NAI FT G QI I Sbjct: 949 QDILSSQQFFIQQKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQG-QINI 1007 Query: 728 STTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 V + +RDTG+GM+ E+ PF Q +S R G+GLGL + + Sbjct: 1008 VAELVEQHDRDIHVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRR 1067 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 + D G+ ++ S G+ I Sbjct: 1068 LADLMGGRIWVESREGAGSCFYIEL 1092 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 70/198 (35%), Gaps = 6/198 (3%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + +W+ + ++ E + ++ QL +I+ Sbjct: 288 YRARWSDIPIWVYLLGGVVILFSTVIIVSNRRLKREMAERNRAEQASADSAKQLNAIINT 347 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 T GI +++ G+I N ++ +F P+ D++ + L + + + + +++ + Sbjct: 348 TDAGIILVSPLGVIEFANNRMADMFTLPLNDLIGTRYVERLHPSERQIGDERMRQLIKGE 407 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576 +R + + ++ + + DI+ KQ ++ L + Sbjct: 408 IRSV-TLDRHYIRADGTDFWGHLSGSRMEHADGSLKSLVGVISDITHRKQAEDTLREMEA 466 Query: 577 IAEKESSHKSDFLARVSH 594 A+ H + R++H Sbjct: 467 TAQAAKRHLEE-AQRIAH 483 >gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 1443 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 130/809 (16%), Positives = 273/809 (33%), Gaps = 103/809 (12%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT----------- 142 S + IG + G + ++ ++H++ + + +L + Sbjct: 553 YYSPQFLSLIGYPLDQD-GPTINELLALIHLEDQDQVKAILDNLCTGRSSQRCSAVLGVS 611 Query: 143 --------WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 W K L +G+ I L I N E R G Sbjct: 612 PMSDCIKKWKQKFRLLRTDGSIS--WILSTGLVITDDNGEVV--RLVGTFTDITDS-QRV 666 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHK 250 + + + V + +Q P L KN V+ Sbjct: 667 KALLAGQNRILEMITQWEKLPDVLDRLARLIEEQLPKIRCAFLLVDKNGVNLRHTAAPSL 726 Query: 251 DDV-----------------------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + ++ + + ++ + NL Sbjct: 727 PESYIQAIDGMVIAPYMGCCGTAAYWRESVMVKDIATHPLCGSIRDLALSHNLRACWSIP 786 Query: 288 YFGTLQ------------------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 T + + + + E T + Sbjct: 787 ILSTQGTVLGTFSTYYTEPHTPNPEEQELADKATQLARIAIERSVAQEDVLRTNAMLKAQ 846 Query: 330 PIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 V + + N F L + + + + + LL + + + Sbjct: 847 QEAAIDGILVVDENFRVVSYNHRFSDLWQ--TPEQLFETNDIQELLKQVSSQLKHPEEFL 904 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + + F + + + + ++++ Sbjct: 905 AQVDYLQAHPKTTNYDELLIKDGR---IFDFYSAPVLTSGGDYYGRIFCNRDITERKLSE 961 Query: 445 RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 K+ + ++E+ D I + + E GIIL N+ ++ G +I+ + + + Sbjct: 962 AKLRQAEQKYRKLVESAGDAILMADAETGIILEANQMAEQMLGRRRAEIIGLHQSQIIPR 1021 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + + + E L + + +L + DIS+ Sbjct: 1022 ERFKAYSQSFQQHVEAGGVFQEELELLHQVGTTVPVEVSATTLELQGKTVVQGIFRDISD 1081 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ + L AK AE + KS+F+A +SHE+RTPL I+G++++++ + P + Sbjct: 1082 RKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEE---PNLSATQ 1138 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I +SG +L ++ND+LD+SKIE+ KM L + + + +V + A +K Sbjct: 1139 KEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVISAKQKN 1198 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----------QIIISTTH 731 + R F + +P + D ++Q+ +N+L NA+ FT +GG ++ + + Sbjct: 1199 LSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGGVTFKVGYLGCSELNVDRSL 1258 Query: 732 TSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T +++ + DTG+G+ +L + PF Q+ N + GTGLGL ++K + + Sbjct: 1259 TEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGN-TDRQVNGTGLGLSISKRLAELM 1317 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + + ST +G++ + L D S Sbjct: 1318 GSELKVKSTVGQGSIFWLDLDLPDVSQEQ 1346 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 83/217 (38%), Gaps = 17/217 (7%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + + V + SI E +GI +G +S N A+++++GY Sbjct: 340 ALFLAAITSERNSAAELLLLSVAKYRSIFENAVEGICQTTPDGSYISANPALARIYGYQS 399 Query: 490 EDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + L T P L ++ + E K+ ++ + ++ Sbjct: 400 PEELVASVTDIAHQLYVDPQRRADLLLQLQEDGVVSGFEAQIY--QKDGSIIWISKNVRA 457 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + SS + T+ +I+E K ++ L + + E + ++ L +++ ++ Sbjct: 458 IRDSSNFLLYYEATVEEITERKHAQDALLYQNERLEYQFQERTATLRQLNRQL------- 510 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 +EV++++R +A I + N + +I Sbjct: 511 --IAEVLEHKRIEDALRESEERFALAIQANTNGLFEI 545 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 28/341 (8%), Positives = 82/341 (24%), Gaps = 67/341 (19%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 S + + G+ ANP+ + Y+S +++ Sbjct: 347 TSERNSAAELLLLSVAKYRSIFENAVEGICQTTPDGSYISANPALARIYGYQSPEEL--V 404 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 ++ + + ++ + D A I + + ++ + Sbjct: 405 ASVTDIAHQLYVDPQRRADLLLQLQEDGVVSGFEA---QIYQKDGSIIWISKNVRAIRDS 461 Query: 424 FPENMPQNGIEPEDVDTRIN---------------------------------------K 444 + E + + + Sbjct: 462 SNFLLYYEATVEEITERKHAQDALLYQNERLEYQFQERTATLRQLNRQLIAEVLEHKRIE 521 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLE 502 + + ++A ++G+ IN + + L GYP++ + Sbjct: 522 DALRESEERFALAIQANTNGLFEINLKTYDHYYSPQFLSLIGYPLDQDGPTINELLALIH 581 Query: 503 QNTPSVMNHYLTEILSLDLRQT----------------LEKITLGSTKEEKLLSLRIIIK 546 + L + + Q ++ + + + Sbjct: 582 LEDQDQVKAILDNLCTGRSSQRCSAVLGVSPMSDCIKKWKQKFRLLRTDGSISWILSTGL 641 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + T DI++ ++ K L+ +I E + Sbjct: 642 VITDDNGEVVRLVGTFTDITDSQRVKALLAGQNRILEMITQ 682 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 32/392 (8%), Positives = 100/392 (25%), Gaps = 60/392 (15%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145 G + L + G + + + + D++ L++DP + L+ G Sbjct: 377 QTTPDGSYISANPALARIYGYQSPEELVASVTDIAHQLYVDPQRRADLLLQLQEDGVVSG 436 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + ++ +G+ + I I + F + + + + AL + ++ Sbjct: 437 FEAQIYQKDGSI--IWISKNVRAIRDSS-NFLLYYEATVEEITERKHAQDALLYQNERLE 493 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E + + ++ +V + + + + Sbjct: 494 YQFQERTATLRQLNR---------------QLIAEVLEHKRIEDALRESEERFALAIQAN 538 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + Y + + + L+ E ++ Sbjct: 539 TNGLFEINLKTY--------DHYYSPQFLSLIGYPLDQDGPTINELLALIHLEDQDQVKA 590 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 +D G ++ + + D + Sbjct: 591 ILDNL-------CTGR---SSQRCSAVLGVSPMSDCIKK----------------WKQKF 624 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L R+D + + I + + + + + G + ++ Sbjct: 625 RLLRTDGSISWILSTGLVITDDNGEVVRLVGTFTDITDSQRVKALLAG-QNRILEMITQW 683 Query: 445 RKMEIEVMQLCSILEA----TSDGIAIINREG 472 K+ + +L ++E ++++ G Sbjct: 684 EKLPDVLDRLARLIEEQLPKIRCAFLLVDKNG 715 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 11/177 (6%) Query: 90 DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147 DA G + E ++ + +G ++IG+ + + ++ + + Sbjct: 986 DAETGIILEANQMAEQMLGRRRAEIIGLHQSQIIPRERFKAYSQSFQQHVEAGGVFQEEL 1045 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSH 206 L GT VP++++A + E G GI K+ Sbjct: 1046 ELLHQVGTT--VPVEVSATTL-----ELQGKTVVQGIFRDISDRKQAEQALKQAKVDAEV 1098 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K + + + ++ + +L+ + +++ LLT Sbjct: 1099 ANRAKSEFVANMSHELRT-PLNGILGYAQILQEEPNLSATQKEQLSIIQQSGQHLLT 1154 >gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1049 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 125/763 (16%), Positives = 268/763 (35%), Gaps = 70/763 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNT 142 W++D +S +L +G + + G + + ++R+ Sbjct: 168 VWDLDCDTSEVFVSPQLAALLGYGSDAVPGTHDGWLGLVHPSDRPGFEEALWGAVERRGA 227 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD- 201 + + + +G ++ + + S + + R G + +R Sbjct: 228 FDRELRILDRDG--IWRWVLVRGKTAESDDGKAP-ARMVGTIQDVHARKTAEEELRRAKM 284 Query: 202 -------------KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEY 246 L E V+ E+ L + ++ T+Y Sbjct: 285 AADLANSALKVNMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASEAEIVGRTDY 344 Query: 247 YAHKDDVLKTEKYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 D+ + L + + E++ + + + + L ++ + L Sbjct: 345 DFVDADLADFFRGHDLRAMNSGRPCINEEQVTYRDDGHVEYLETIKTPLFDDDGKLIGVL 404 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + + F++ G L N +T Y ++ Sbjct: 405 GVARDITERKRIADELKESELRFKVLHNASFGGIFLHDQGVLLDCNQGLSDITGYT-QEE 463 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLY-------RSDRTCIAASARLHTIQWNRENSLA 412 + L L + + I+ R D TC +I + Sbjct: 464 LSGMEALDLLAPSARDDVREKIRARFERPYETVGLRRDGTCYPLQIAAKSIPYKGRVVRV 523 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + F + + + + +++ + I E + G+ +R+G Sbjct: 524 VEFR-------------------DITERKRAEDELKDSERRHRVIFENSPLGMIRFSRDG 564 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 IL N ++ G E ++ P + M L ++ + + + Sbjct: 565 RILDCNDRFVEMMGSSREALIGFPMLR----ASNPDMRRALATAIAGSPSAYEDYYSSET 620 Query: 533 TKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + E L ++ + T+ D SE K++++ L AK+ AE S K++FL Sbjct: 621 GRRETFLHVQFNPVNPGQSPTEVIATLEDFSERKRDQDALRRAKEQAEAFSRSKTEFLTN 680 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL I+G +++ + EY+ +S +++++ D+LD+S++E Sbjct: 681 MSHEIRTPLNGIMGMLQLLHSTGLSR----EQAEYSGAALQSSRRLMNLLTDILDLSRVE 736 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 +GK+ + P L E + L +L + + + + N+PR ++ D ++Q+ N Sbjct: 737 AGKLVVRAVPFDLVETCRQVCDLFKLTSAQSGVTLICELGENVPRRVIGDAIRLQQVLTN 796 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 +L NA FT +G ++ + ++ V DTG G+ + +++ F Q+ Sbjct: 797 LLGNAFKFTATGSIVMAAHRLPDGPSKGYRILFSVADTGEGIPDEKVDTLFDAFTQVSEG 856 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R +G GLGL + + +V G I S GT + + P Sbjct: 857 YTRRHQGAGLGLSICRNLVRLMGGTMSIESEEGAGTTLYVALP 899 Score = 150 bits (380), Expect = 8e-34, Method: Composition-based stats. Identities = 75/652 (11%), Positives = 185/652 (28%), Gaps = 88/652 (13%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQN-- 141 ++D+ G + + L G ++ G ++ + + R++ Sbjct: 38 VLSLDSEGRVVFANRHLLDMTGWTFEEIRGKSWFELFLPEDVREGIREVFLATMARRDVG 97 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T + + + I + + GI R A+ + Sbjct: 98 PHSCHTNEI-VTRDGRRRNVSWFNVLISAPEGGVANVTSLGIDLSARE-EAREAVEASEE 155 Query: 202 KKFSHLHEIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTE---YYAHKDDVLKTE 257 + L K ++ S Q + V + H D E Sbjct: 156 QLKLALDAAKDAVWDLDCDTSEVFVSPQLAALLGYGSDAVPGTHDGWLGLVHPSDRPGFE 215 Query: 258 KYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYF 315 + E + + + T +++ ++ + Sbjct: 216 EALWGAVERRGAFDRELRILDRDGIWRWVLVRGKTAESDDGKAPARMVGTIQDVHARKTA 275 Query: 316 DEGENL------------------TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKS 356 +E ++ P +V G + N F L Sbjct: 276 EEELRRAKMAADLANSALKVNMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASE 335 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + L+D + R+ + + + + I Sbjct: 336 AEIVGR---TDYDFVDADLADFFRGHDL---RAMNSGRPCINEEQVTYRDDGHVEYLETI 389 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + G+ + + + +++ ++ + A+ GI + + +G++L Sbjct: 390 KTPLFDDDGKLIGVLGVARDITERKRIADELKESELRFKVLHNASFGGIFLHD-QGVLLD 448 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N+ +S + GY E++ L + + + T+G ++ Sbjct: 449 CNQGLSDITGYTQEELSGMEALDLLAPSARDDVREKIRARFERP------YETVGLRRDG 502 Query: 537 KLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L+I K +P+ DI+E K+ +++L +++ Sbjct: 503 TCYPLQIAAKSIPYKGRVVRVVEFRDITERKRAEDELKDSERRHRVIFE----------- 551 Query: 595 EIRTPLTAIIG------------FSEVIKNQRFGPLG-------NPRYIEYANYIDRSGN 635 +PL I F E++ + R +G NP Sbjct: 552 --NSPLGMIRFSRDGRILDCNDRFVEMMGSSREALIGFPMLRASNPDMRRALATAIAGSP 609 Query: 636 LVLDIVNDLLDISKIESGK----MNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + D E+G+ +++ F PV+ ++ +E I+ ++ ++ KR Sbjct: 610 SAYE------DYYSSETGRRETFLHVQFNPVNPGQSPTEVIATLEDFSERKR 655 Score = 123 bits (309), Expect = 1e-25, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 17/302 (5%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 R L + E ++ P + S G + +AN L +T + ++I Sbjct: 10 IRRIEELEHRLADSERRWRGVLEYMPHIVLSLDSEGRVVFANRHLLDMTGWT-FEEIRGK 68 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L + + R D S + I +++ + Sbjct: 69 SWFELFLPEDVREGIREVFLATMARRD--VGPHSCHTNEIVTRDGRRRNVSWFNVLISAP 126 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + +E QL L+A D + ++ + + + ++ Sbjct: 127 EGGVANVTSLGIDLSAREEAREAVEASEEQLKLALDAAKDAVWDLDCDTSEVFVSPQLAA 186 Query: 484 LFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 L GY + + + + + L + ++ ++ + Sbjct: 187 LLGYGSDAVPGTHDGWLGLVHPSDRPGFEEALWGAVERRGA--FDRELRILDRDGIWRWV 244 Query: 542 RIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + K T+ D+ K + +L AK A+ +S ++H + Sbjct: 245 LVRGKTAESDDGKAPARMVGTIQDVHARKTAEEELRRAKMAADLANSALKV---NMAH-L 300 Query: 597 RT 598 RT Sbjct: 301 RT 302 >gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1524 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 157/850 (18%), Positives = 308/850 (36%), Gaps = 82/850 (9%) Query: 22 TQDLSKKKIDNGFETEKSKKE-NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP 80 TQD++++K + E+ ++ N ++ Q D E T L+ + + + Sbjct: 547 TQDITQQK-----QAEQRLQQLNQELEARVQQRTADLEAEIDERTRLLNILDASLNE--- 598 Query: 81 RTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 + DA + ++ + +G ++ + + L + + D L Sbjct: 599 -----IYIFDAETLKFQYANQGALRNLGYTLEQLQQITAIKLKPQLTPEKFQQLIDPLLN 653 Query: 140 QNTW--YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + GT P+++ I + + R F + Sbjct: 654 HQQHKIIFRAAYQRKNGTLY--PVEVHFQLIEHQQERLF-----LAVALDITERQQTEDR 706 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + ++ + E + Y + + K + + + + Sbjct: 707 LRLVEFALDNAQESVVIVDQSGQIVYVNKTACESLGYSSAKLSNLKIWQIDQTLNAPPQW 766 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAY 314 E++ + SL + HT + L + F ++ A Sbjct: 767 EQFCQRLKHQKSLLLESIHHTQTGEAIPVEITLTELNFHGIPYFCEIARDIRERKQAEAA 826 Query: 315 FDEGENLTPETVD---------------------------KCPIPFFVYSHGNLFYANPS 347 + +N V+ + F + + P Sbjct: 827 LQKRDNYLTALVEVQRQLLCATSQSDLYKLVLSILGQAANASQVYVFEHYYDEFQR--PY 884 Query: 348 FLLLTKYKSVDDIEIAG---------------GLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 ++ + + D + L + ++ + + Sbjct: 885 LYYMSHWSAPDATSRLNRSVLQQLYDTPCFSSWVEKLAQGEAICESLSDMTSEQRQILEP 944 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-- 450 + L + E + F E Q+ E +R++ E Sbjct: 945 VGIFTVLLFPLIVKGEFFGLIGFDNDEDDRQWDEAEISLLAAAVSAIALATERQLAQEQL 1004 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNT-PSV 508 QL +I EA S+GIAI + G L N+A +LFGY ++L + + + Sbjct: 1005 KRQLTAI-EAASEGIAITSPMGDYLYLNKAHLELFGYTEANELLNRNWKSLYHPEEGDRI 1063 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + +++ + L K+ + L S + DI+E K+ + Sbjct: 1064 DREVIAKLMEKGYSRG---EALAIRKDGSTFLEEFSLT-LTNSGEFVCVCRDITERKRAE 1119 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L E+ + K +F+A +SHE+RTPL +I+G SEV++ + +G L N + + Sbjct: 1120 VELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVL-NAEQLRSLS 1178 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I++SG +L+++N++LD+SKIESGKM L V+L + +++ V+ A++K I ++ Sbjct: 1179 TIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQKNIQLQF 1238 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVG 747 I D ++Q+ +N+LSNA+ FTP G I++ N V L V DTG+G Sbjct: 1239 IATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLSVTDTGIG 1298 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + +PF QI +S R GTGLGL L + + + G + S +G+ + Sbjct: 1299 IAPEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSEVGRGSTFIVT 1358 Query: 808 FPLYDTSHPH 817 P T P Sbjct: 1359 LPWNSTVVPE 1368 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 54/536 (10%), Positives = 150/536 (27%), Gaps = 59/536 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 + G L ++++ G + I + + + + + + + G++ Sbjct: 204 LSREGILLDVNQTALDFGGLKREETINRPFWETYWWTISPETQHQLRQSIAKAA--SGES 261 Query: 148 TLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + D A P+ + E + + + Sbjct: 262 IYYEVNVKIVGGKVATTDFALRPLRDQTGEVILL--IAESRDLSAHVEVKRALQDNQILL 319 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVL---KTEK 258 S + + + ++ + S L ++ T++ + + + Sbjct: 320 SSVLDCIPQAVFWKNKEGNFLGCNYQFSVDGGLSSSKEIIGKTDFDMPWKEEAKLYRADD 379 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + ++ S E+ L +E + + + L++ E + + + Sbjct: 380 HQVMASGEAKLNIEEPITKVGNISRLLRSHKMPLRDAEGEIIGVVGTYEDITERKKAELA 439 Query: 319 ENLTPE----TVDKCPIP-FFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + V+ P ++ H L S ++E L Sbjct: 440 LRCSEARYQMLVENFPNGAVMMFDHDLRYILIGGLGLAEVGL-SKQEMEGKTIWEAL--- 495 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 I+P+ A ++ + F P Sbjct: 496 -PKETCELIEPLYHRTLAGEEFVAELPF------GDHIYLVYFFPIID---QETIQTGVV 545 Query: 433 IEPEDVDTRINKRKMEI---------------------EVMQLCSILEATSDGIAIINRE 471 + + + +++++ E +L +IL+A+ + I I + E Sbjct: 546 LTQDITQQKQAEQRLQQLNQELEARVQQRTADLEAEIDERTRLLNILDASLNEIYIFDAE 605 Query: 472 -GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 N+ + GY +E + + Q TP + +L+ + + + Sbjct: 606 TLKFQYANQGALRNLGYTLEQLQQITAIKLKPQLTPEKFQQLIDPLLNHQQHKIIFR-AA 664 Query: 531 GSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 K L + + + + + DI+E +Q +++L + + Sbjct: 665 YQRKNGTLYPVEVHFQLIEHQQERLFLAVALDITERQQTEDRLRLVEFALDNAQES 720 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 64/559 (11%), Positives = 139/559 (24%), Gaps = 83/559 (14%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAF-KMIGMR-----LCDVSDILHIDPNNHIGD 135 W + G + + G + ++IG + + + D + Sbjct: 327 PQAVFWK-NKEGNFLGCNYQFSVDGGLSSSKEIIGKTDFDMPWKEEAKLYRADDH----Q 381 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 ++ G + + +P+ E G G Sbjct: 382 VMASGEAKLNIEEPITKVGNISRL-LRSHKMPLRDAEGEIIGV--VGTYEDITERKKAEL 438 Query: 196 LGKRLDKKFSHLHEIKKGHSSVE---KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + + ++ L E + + +Y + K ++ T + A + Sbjct: 439 ALRCSEARYQMLVENFPNGAVMMFDHDLRYILIGGLGLAEVGLSKQEMEGKTIWEALPKE 498 Query: 253 V--LKTEKYPLLTSEESSLPEQEDFHTI-------------------NLNQYTKKQYFGT 291 L Y + E + E I T+++ Sbjct: 499 TCELIEPLYHRTLAGEEFVAELPFGDHIYLVYFFPIIDQETIQTGVVLTQDITQQKQAEQ 558 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFL 349 + E + L A DE L +D +++ L YAN L Sbjct: 559 RLQQLNQELEARVQQRTADLEAEIDERTRLL-NILDASLNEIYIFDAETLKFQYANQGAL 617 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK---------------PVMLYRSDRTCI 394 Y +E ++ + P+L+ + R + T Sbjct: 618 RNLGYT----LEQLQQITAIKLKPQLTPEKFQQLIDPLLNHQQHKIIFRAAYQRKNGTLY 673 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 I+ +E + + + + + ++ + Sbjct: 674 PVEVHFQLIEHQQER-------------------LFLAVALDITERQQTEDRLRLVEF-- 712 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 L+ + + I+++ G I+ N+ + GY + + Sbjct: 713 --ALDNAQESVVIVDQSGQIVYVNKTACESLGYSSAKLSNLKIWQIDQTLNAPPQWEQFC 770 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + L LE I T E + + + + DI E KQ + L Sbjct: 771 QRLKHQKSLLLESIHHTQTGEAIPVEITLTELNFHGIPYFCEIARDIRERKQAEAALQKR 830 Query: 575 KKIAEKESSHKSDFLARVS 593 + L S Sbjct: 831 DNYLTALVEVQRQLLCATS 849 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 5/136 (3%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + + ++ ++L T AI++REGI+L N+ G E+ + +PF Sbjct: 181 AQTKTSNQKIKALLNNTFQCTAILSREGILLDVNQTALDFGGLKREETINRPFWETYWWT 240 Query: 505 TPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----H 559 H L + I +++ K+ + ++ L + + + Sbjct: 241 ISPETQHQLRQSIAKAASGESIYYEVNVKIVGGKVATTDFALRPLRDQTGEVILLIAESR 300 Query: 560 DISEWKQEKNKLSHAK 575 D+S + K L + Sbjct: 301 DLSAHVEVKRALQDNQ 316 >gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1295 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 119/780 (15%), Positives = 253/780 (32%), Gaps = 46/780 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD ++ DSE F + DA+G ++ + G + Sbjct: 258 TDISERKRIEGELADSERRFRSVVESL-KEVIFRTDANGCWTYLNPAWTEITGFAIQDSL 316 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G L RQ + +++ A + Sbjct: 317 GRPSLKSVPAADRRYAAVRFAALARQEIASIREEARYRTRDGRGRWLEIFARAEFDDGGR 376 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PP 232 F+G G ++ + L E+ ++ Sbjct: 377 FTGIAG--TLNDVTERRLALEQLHQQLHFVQELFEVLPLPIYLKDTAGRYLQFNKASEDF 434 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF--- 289 +++ T + ++ + + + + + Sbjct: 435 FGIRRSEWLGRTVADLLPAEQAALHAERDRQLLATAGQQVYEAQVEGRDGRRRDTIYHKA 494 Query: 290 ---GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG----NLF 342 + + + + A E+ + P F G Sbjct: 495 TLTRPDGSIAGLLGAIVDITERKAQEAAVGAAESRLRHITNTVPAAVFQCEIGLRGVRYT 554 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + + +T + A ++ + V + L Sbjct: 555 FLSDRVSEITGHPREAVFADASVITGQIADDDRQRVMRGAWVAAMQRQAWQDEYRIHL-- 612 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + P + + GI + ++ +L + E Sbjct: 613 -PNEALRWIRCQIHPAPELAADGATI-YTGIWQDVSL-------LKEADARLREVTENIP 663 Query: 463 DGIAIINREG----IILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEI 516 + + G +R ++++ G E+ + P + + ++N + + Sbjct: 664 VAVYQYHLSGAGGRTFRFFSRGLAQICGLSAEEAMASPEALHDLVHADDRELVNMSIAQA 723 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + +++ + +++ + SS ++ + D+S K +L Sbjct: 724 AASQSPWSVDFRLIDRH-SGRIVWVHGEAHGKAMPDGSSLWNGYLADVSSAKMASEQLRL 782 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + KS FLA +SHEIRTPL +IG ++++ G + R + + +S Sbjct: 783 AKEDAEAANRAKSAFLANMSHEIRTPLNGVIGMTDLLL----GSTLSHRQRAHLQIVKQS 838 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +L I+ND+LD SKIE+GK+ +L + V E + + L A++K I + A + Sbjct: 839 SDALLTILNDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALALRASDKGIELIGDIAAD 898 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGM 748 +P +L D ++Q+ +N++ NAI FT G ++I+ ++ + + D+G+G+ Sbjct: 899 VPTHVLGDPGRLRQVLVNLVGNAIKFTSQG-EVIVRLECSAGNADEVGLHFAIIDSGIGI 957 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L F Q S R GTGLGL ++ + + G + ST +G+ Sbjct: 958 PEEKLATIFDAFAQADGSITRRYGGTGLGLTISARLAELLGGHIRVDSTLGQGSTFHFTL 1017 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 49/505 (9%), Positives = 130/505 (25%), Gaps = 34/505 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145 D HG + ++ + G +++G V + + ++ W+G Sbjct: 165 TDVHGTITYANDRFCEISGYTRDELLGRNHRIVKSGMHPPDL--FAQMWAVISAGQVWHG 222 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + EG ++ + +P + + + I +++F Sbjct: 223 ELCNRSREGRFY--WVNASIVPFCDQGGQPLQY--IAIRTDISERKRIEGELADSERRFR 278 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEK--YP 260 + E K + +++ + + D Sbjct: 279 SVVESLKEVIFRTDANGCWTYLNPAWTEITGFAIQDSLGRPSLKSVPAADRRYAAVRFAA 338 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L E +S+ E+ + T + + + ++ N + E + Sbjct: 339 LARQEIASIREEARYRTRDGRGRWLEIFARAEFDDGGRFTGIAGTLNDVTERRLALEQLH 398 Query: 321 L----TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + P+P ++ G N + + + + L + Sbjct: 399 QQLHFVQELFEVLPLPIYLKDTAGRYLQFNKASEDFFGIRRSEWLGR---TVADLLPAEQ 455 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + +A + L + ++ + G Sbjct: 456 AALHAERDRQLLATAGQQ----VYEAQVEGRDGRRRDTIYHKATLTRPDGSIAGLLGAIV 511 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREG-IILSTNRAVSKLFGYPVEDI 492 + + + + + +L I + I G + VS++ G+P E + Sbjct: 512 DITERKAQEAAVGAAESRLRHITNTVPAAVFQCEIGLRGVRYTFLSDRVSEITGHPREAV 571 Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 T + + + E + + + +I Sbjct: 572 FADASVITGQIADDDRQRVMRGAWVAAMQRQAWQDEYRIHLPNEALRWIRCQIHPAPELA 631 Query: 551 SSC---YSLTMHDISEWKQEKNKLS 572 + Y+ D+S K+ +L Sbjct: 632 ADGATIYTGIWQDVSLLKEADARLR 656 Score = 132 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 41/398 (10%), Positives = 109/398 (27%), Gaps = 15/398 (3%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 D G + ++Q L+ ++ + ++ Sbjct: 20 AAAVLDELEALAAQGGMSPEAVRFVNGLAGFLGHVGLAYAQNDRDLELKTRS-LDLCSDE 78 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 +D L++E + S + +L + Sbjct: 79 LLEANDRLRSELASRTRAIGSLRHTASGLLGGSEPSLPPGDDLESLSVLMADLVRQREAS 138 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 A +D+ I HG + YAN F ++ Y + + G Sbjct: 139 QRDLQGALLALANQKFA--LDQHAIVSITDVHGTITYANDRFCEISGYTRDELL----GR 192 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + + + S + + +Q + Sbjct: 193 NHRIVKSGMHPPDLFAQMWAVISAGQVWHGELCN---RSREGRFYWVNASIVPFCDQGGQ 249 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + I + + + + ++ + S++E+ + I + G N A +++ G Sbjct: 250 PLQYIAIRTDISERKRIEGELADSERRFRSVVESLKEVIFRTDANGCWTYLNPAWTEITG 309 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + ++D L +P + + ++ E T++ + L I + Sbjct: 310 FAIQDSLGRPSLKSVPAADRRYAAVRFAALARQEIASIRE-EARYRTRDGRGRWLEIFAR 368 Query: 547 KLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEK 580 T++D++E + +L ++ Sbjct: 369 AEFDDGGRFTGIAGTLNDVTERRLALEQLHQQLHFVQE 406 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 79/292 (27%), Gaps = 11/292 (3%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 L + L + + E FL + Sbjct: 4 LLKRQMRRRLGVDGERAAAVLDELEALAAQGGMSPEAVRFVNGLAGFLGHVGLAYAQNDR 63 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + LD A + + RT S R + ++ P + Sbjct: 64 DLELKTRSLDLCSDELLEANDRLRSELASRTRAIGSLRHTASGLLGGSEPSLP--PGDDL 121 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 M + E + + + + L+ ++I + G I N Sbjct: 122 ESLSVLMADLVRQREASQRDLQGALLALANQKFA--LDQ-HAIVSITDVHGTITYANDRF 178 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ GY +++L + + P + + ++S Q ++E + + Sbjct: 179 CEISGYTRDELLGRNHRIVKSGMHPPDLFAQMWAVISAG--QVWHGELCNRSREGRFYWV 236 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 I Y DISE K+ + +L+ +++ + + Sbjct: 237 NASIVPFCDQGGQPLQYIAIRTDISERKRIEGELADSERRFRSVVESLKEVI 288 >gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1029 Score = 389 bits (999), Expect = e-105, Method: Composition-based stats. Identities = 119/756 (15%), Positives = 250/756 (33%), Gaps = 59/756 (7%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHI-DPNNHIGDLL-KRQNTWYGKTTL 149 + S E + G A +++G R + + + IG + T Sbjct: 2 RVLRWSPEAERVFGWSAAEVLGRRPNEWSFTHPDDAAEVKRAIGQAITADGPTPPVIGRN 61 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + +G L+ + F + + +++H+ Sbjct: 62 FTRDGRLLH--CEWHNRANRDPQGRLVSLLSFA--KDLTRQLEAERARDLSEARYAHIFN 117 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + P S T D+ LL +++ Sbjct: 118 NSHAVMLILDP--ESGRILDANPAAEEFYGWSRKTLQTMQIGDINTLSPQALLVELKAAH 175 Query: 270 PEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 E+ +F + + + S + + + Sbjct: 176 AEERKHFEFRHRRADGSVRDVEVHSGPTEDGNRSMVFSIVHDITERKQAEALSRRWERFF 235 Query: 327 DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + ++ + N ++ Y S++++ + L + +A Sbjct: 236 RLSNLGLAMHDVSDNTIIDVNATYASQHGY-SIEELRGM-RIDELYPEDEREQLHAHLAE 293 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + R + L + + + + + + + Sbjct: 294 ADRIGNASFETVHLR------KDGSRLPLVIGVTALLDDRGRAVARFAFGLDISARKAAE 347 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ +L +E + + I I N I N+A GY + + + + Sbjct: 348 DELR----KLSRAVEESPESIVITNTRAEIEYVNQAFIDKTGYSRAEAIGQNPRLLQSGR 403 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 T L L+ ++ + K+ R+ I + S Y D Sbjct: 404 TTPATYADLWNTLTHG--RSWQGEFFNRRKDGSEYLERVTITPIHDESGHITHYVAVKQD 461 Query: 561 ISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTA 602 I+ ++ + +L + A S KS+FL +SHEIRTP+ Sbjct: 462 ITAQRRMEEELLRYHEHLEGLVESRTAELQHALDAANIASRAKSEFLTTMSHEIRTPMNG 521 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG +V+ + + +E + S +L +++D+LD S+IESG + L P Sbjct: 522 VIGLLDVLSHSQLST----EQVEMVGIMRESAETLLRLIDDILDFSRIESGNLELDVGPA 577 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT-- 719 S+ + ++ + ++Q AN K + + T ++P + D ++QI N++ NA+ F+ Sbjct: 578 SIPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTDALRLQQILGNLVGNAVKFSSG 637 Query: 720 -PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G++ I + V D G+G+ +EK PF Q +S R G+GLGL Sbjct: 638 LDRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGL 697 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + +V G+ + S P +G+ + PL T+ Sbjct: 698 SICTRLVRMMKGRMEVNSLPGRGSRFVVTLPLAATN 733 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 35/374 (9%), Positives = 102/374 (27%), Gaps = 16/374 (4%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G + + + + G + M++ D++ + P + +L Sbjct: 126 LDPESGRILDANPAAEEFYGWSRKTLQTMQIGDINT---LSPQALLVELKAAHAEERKHF 182 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +++ + P NR F IVH AL +R ++ F Sbjct: 183 EFRHRRADGSVRDVEVHSGPTEDGNRSMV----FSIVHDITERKQAEALSRRWERFFRLS 238 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + H + D+ + + ++ + +D+ + + Sbjct: 239 NLGLAMHDVSDNTIIDVNATYASQHGYSIEELRGMRIDELYPEDEREQLHAHLAEADRIG 298 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + ++ L ++ + + S ++ V+ Sbjct: 299 NASFETVHLRKDGSRLPLVIGVTALLDDRGRAVARFAFGLDISARKAAEDELRKLSRAVE 358 Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + P + + + Y N +F+ T Y + I L + + Sbjct: 359 ESPESIVITNTRAEIEYVNQAFIDKTGYSRAEAIGQNP----RLLQSGRTTPATYADLWN 414 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + + ++ ++ + R + + Sbjct: 415 TLTHGRSWQGE---FFNRRKDGSEYLERVTITPIHDESGHITHYVAVKQDITAQRRMEEE 471 Query: 447 MEIEVMQLCSILEA 460 + L ++E+ Sbjct: 472 LLRYHEHLEGLVES 485 >gi|117924080|ref|YP_864697.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607836|gb|ABK43291.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 911 Score = 389 bits (999), Expect = e-105, Method: Composition-based stats. Identities = 126/740 (17%), Positives = 238/740 (32%), Gaps = 29/740 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D L ++ G + G + D + + + + L Sbjct: 39 DGQARLIRWNKNFATVTGYDDTTLQGKQALDFIAPCDQALVSSRIQQVFSEGHATIEAAL 98 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 G P L+ + + + G I RV+ +A + L + Sbjct: 99 RAHNG--QETPYFLSGSLVMIDEQPYLSGTGIDISARKRVEETLQAEQQLTQASLDALPD 156 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + + L L ++ Sbjct: 157 TYFLFHPETGKALRWNRAFREISGFSDRQIGALPAPSSYYSQSDLSIMATALEQLRKTGT 216 Query: 270 PEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETV 326 + E N + +L + + + E E Sbjct: 217 AKLEINLICHNGQTIPFEYAISSLAHQGQNLIISIGRDISERRLAENQLRESEQKFLRLF 276 Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD---NNAIK 382 + IP V G + + N F L Y D ++ P+ Sbjct: 277 KEVSIPLVLVNKQGMVTHINDRFTTLLGYSMADIPDLDSWWQRAYPDPRYRAWVKETWTL 336 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 V +D IA N E + + + Sbjct: 337 AVQKAMADGQDIA-PLEYQVTCKNGEQREIQISGVTFGED-------TLATLIDVTERSR 388 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + ++ E S++ I +++ +G I+ N + +L GY + ++ K + Sbjct: 389 AAKTLQQERDFADSLIHTAQTIILVLDTQGRIMRINPYMEELSGYTLAEVQGKDWWNTFL 448 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTM 558 L ++ + TK+ +LL + I Sbjct: 449 PQQDHATLRALF-AKAVGHIHNQGHVNPILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIG 507 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +DI+ + + + A AE + KS+FLA +SHEIRTPL ++G +++ L Sbjct: 508 YDITHKRALEAENREALARAESANQAKSEFLAIMSHEIRTPLNVLLGMGDLLHE----SL 563 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + ++G ++ +++D+LD+SKIE G + L EP+ +V+L Sbjct: 564 LTEEQTGQLELLIKAGKHLVVLIDDILDLSKIEFGGLTLTREPLQPHRLFLLICDIVRLQ 623 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A EK + +P +L D ++QI +N+L NAI FT G + + + + Sbjct: 624 AQEKGLTFNCDIPTELPPWVLGDEGRLRQIMINLLHNAIKFTQQG-HVTLKIAYQPAGSL 682 Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + D+G+G+ L F Q +S R GTGLGL +A+ +V G + S Sbjct: 683 FSITISDSGIGIAAKHLNHIFDKFSQADSSISRRYGGTGLGLAIARNLVTLMGGHLTVES 742 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 +G+ ++ L T P Sbjct: 743 CVNQGSHFQLTLELPPTQPP 762 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 50/138 (36%), Gaps = 1/138 (0%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + +++E S + + + ++ N+ + + GY + K F+ + Sbjct: 18 QQSEAFSHAVIEGLSGIFYLFDGQARLIRWNKNFATVTGYDDTTLQGKQALDFIAPCDQA 77 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 +++ + ++ S T+E +E L + + S T DIS K+ Sbjct: 78 LVSSRIQQVFSEGHA-TIEAALRAHNGQETPYFLSGSLVMIDEQPYLSGTGIDISARKRV 136 Query: 568 KNKLSHAKKIAEKESSHK 585 + L +++ + Sbjct: 137 EETLQAEQQLTQASLDAL 154 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 37/145 (25%), Gaps = 18/145 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + I+ + + G ++ G + ++ L + Sbjct: 414 LDTQGRIMRINPYMEELSGYTLAEVQGKDW---WNTFLPQQDHATLRAL-----FAKAVG 465 Query: 149 LWPIEGT--------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +G + I+ + + E G G + A + Sbjct: 466 HIHNQGHVNPILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIG--YDITHKRALEAENREA 523 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225 + ++ K ++ + Sbjct: 524 LARAESANQAKSEFLAIMSHEIRTP 548 >gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 456 Score = 389 bits (999), Expect = e-105, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 184/363 (50%), Gaps = 5/363 (1%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ++ + +I + +DGI +I+ G + N K GY +++L+ + Sbjct: 91 LQESEEKFRTIFDKANDGIYLIDLHGRFIDVNAMACKQTGYSRDEMLQMAYKDMGFPEI- 149 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + E+ E ++ +R I + + DI+E K+ Sbjct: 150 -DYKKQVKELYKKGYTS-FESASILKDDSTAYGQMRSQIIQYGGKTAILSIARDITERKK 207 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + + AK AE + KS+FLA +SHE+RTPL +IIGFS+V+ N+ GPL N +Y Sbjct: 208 AEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPL-NEYQKKY 266 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + + R+G +LDI+ND+L IS IE+G M LH + +A+ E SL+ L A+EK I + Sbjct: 267 TSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILIASEKDIDL 326 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + +P I D+ KQI N++ NAI FT GG + I + + V + V+D+G+ Sbjct: 327 TCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIGGKISDD-LVHISVKDSGI 385 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + +K PF Q+ +S + GTGLGL L K V+ + G+ ++ S KG+ Sbjct: 386 GVSPEDQDKLFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEVGKGSTFTF 445 Query: 807 IFP 809 I P Sbjct: 446 IIP 448 Score = 45.4 bits (106), Expect = 0.038, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 11/175 (6%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 N TDQ S + + E+ F I + + ID HG +++ K G Sbjct: 75 NETDQEIGSYRDFKHSLQESEEKFRTIFDKANDGIYLIDLHGRFIDVNAMACKQTGYSRD 134 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 +M+ M D+ ID + +L K+ T ++ + + Y + S+ Sbjct: 135 EMLQMAYKDMGFPE-IDYKKQVKELYKKGYT-SFESASILKDDSTAYGQ-------MRSQ 185 Query: 172 NREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 ++ G I + + K + + Sbjct: 186 IIQYGGKTAILSIARDITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTP 240 >gi|148258028|ref|YP_001242613.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146410201|gb|ABQ38707.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 981 Score = 389 bits (999), Expect = e-105, Method: Composition-based stats. Identities = 169/645 (26%), Positives = 287/645 (44%), Gaps = 37/645 (5%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L + S + L V K L + Sbjct: 327 LAPAADAPPQQDNITVSTRDASVASDAPPIDNGGLEAAGNVVPFRPAGETKHPALTPVEN 386 Query: 260 PLLTSEESSLPEQEDFHTINLNQYT----------------KKQYFGTLQ--NNSKESFE 301 L + + N +L + S + Sbjct: 387 NAFHELARQLSARLEGDNRNAPADAAAATHEPAAQVTEPFDAPHVPTSLLGSDASDQPTA 446 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 L +D P +Y L YANP+F Y + +E Sbjct: 447 GLQAEWLTPEQPPAQGDSQRDRILLDLLPTGMLIYRLDRLLYANPAFFKQMGYTDLATLE 506 Query: 362 IAGGLSTLLDAPKLSD----NNAIKPVMLYRSDR---TCIAASARLHTIQWNRENSLAMT 414 AGGL L P PV + +D I A ARL TI W+ +++ A+ Sbjct: 507 QAGGLDALYVEPGAPAGSGKPEVGTPVTISAADGSSSEEIKAEARLFTITWDGDSAHALI 566 Query: 415 FIP--------FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 F P + P + + L +IL+ T++GI Sbjct: 567 FAPAPGPAATAVSAPAETGSAPAPAPAAPAPLVLAPPPVAGHADAEDLAAILDVTAEGIL 626 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + + G I + NR+ +FGY +++R+ + ++ +L + E Sbjct: 627 MFDAGGNIHACNRSAEAMFGYDGTELVRRNIIELFAPESARLVLDHLDRVQQAGTANVPE 686 Query: 527 --KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + LG + + L + I + + D+S+ ++ +++L A+++A++ +S Sbjct: 687 PSREVLGKVAQGGAIPLSMTIGRTRQDGPNFFAVFRDLSQLRRGESELLQARRVADRAAS 746 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K+D LAR+SHE+R PL AIIGF+EV+ +RFG LGN RY EY I SG V+ +++D Sbjct: 747 AKADMLARISHEVRAPLNAIIGFAEVMIGERFGTLGNTRYAEYMKDIRASGERVVSLIDD 806 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LL++S+IE+G++ L F +L+E V ++++Q +AN RI+IRTS + ++P ++AD R+ Sbjct: 807 LLELSRIETGRLELAFTSQNLNELVEGCVAVMQPHANRARIIIRTSLSQSLPPVIADARA 866 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QIA+N++S +I +GGQ+I+ST + EV+LRVRDTG G+ + + A++PF + Sbjct: 867 LRQIAMNLISTSISLANAGGQVIVSTATSDFGEVVLRVRDTGHGLNDQAVAAALEPF-RA 925 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +G+GL L L KA+V+AN +F+I + P GTL+E++F Sbjct: 926 TAGPEQGHDGSGLSLSLTKALVEANRAQFHIKAAPKSGTLLEVVF 970 Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 44/221 (19%), Gaps = 22/221 (9%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 NH L P + + +AN + + + Sbjct: 2 NHADFELQALSDPRLAVHAAGSLPAWLWSADGSRVLWANAMAARALGAANSWAL-----V 56 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + RL ++ A+ + Sbjct: 57 DKRFGPADQHRRQVAQLARRLPENGA-----IRLERLRGFGAPLGALATCGCAMIDLPDG 111 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 ++ +L ++E + + G + A +LFG Sbjct: 112 MRAVLITGTDNSGRSWPL------TERLRRLVENSGLALIAFTAHGEFAGISTAGRRLFG 165 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + EI D R L + Sbjct: 166 IHDLS------APLFADVRNEALTAGFAEIQFGDERAVLHR 200 Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats. Identities = 41/362 (11%), Positives = 98/362 (27%), Gaps = 44/362 (12%) Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---------- 201 G L+ DL+A P+++ R + GF + +G Sbjct: 158 TAGRRLFGIHDLSA-PLFADVRNEALTAGFAEIQFGDERAVLHRVGAGSQIGLVAVPAPA 216 Query: 202 ---KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 K+ ++ V + +P P + + + + +T Sbjct: 217 PAVKQAEPNADVPVDAVPVAETAATPPHPANPAPEVAAECPPPPSMDAMTERPLDDETSA 276 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + ++ + + + ++ + ++ ++ + +A Sbjct: 277 QSREAAAAFAPLDEPAVQAPPVVGIDRPEPTSSIAAETADADATAFAQSDLAPAADAPPQ 336 Query: 319 ENLTPETVDKCPIPF--------FVYSHGNLFYANPS----FLLLTKYKSVDDIEIAGGL 366 ++ + + + + GN+ P+ LT ++ E+A L Sbjct: 337 QDNITVSTRDASVASDAPPIDNGGLEAAGNVVPFRPAGETKHPALTPVENNAFHELARQL 396 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 S L+ + + + A ++ + PE Sbjct: 397 SARLEGDNRNAPADAAAATHEPAAQVTEPFDAPHVPTSLLGSDASDQPTAGLQAEWLTPE 456 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 P G D +L+ G+ I + +L N A K G Sbjct: 457 QPPAQGDSQRD-----------------RILLDLLPTGMLIYRLD-RLLYANPAFFKQMG 498 Query: 487 YP 488 Y Sbjct: 499 YT 500 >gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 663 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 146/645 (22%), Positives = 266/645 (41%), Gaps = 34/645 (5%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNK 239 G + L++ + + S S P R ++ Sbjct: 22 GTAQTLDAQRQLLEA-LGNSRDGVALYDSANRLITCNDRYLQMLSPIKDSIRPGARFEDL 80 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 ++ L E +D L + + + F + T Y + + + Sbjct: 81 MAELAEAEKMEDGWLARKLSGG--GLTDATAGDDKFR--DGQWITVNAYATS---DGGQL 133 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358 ++ + +D + G + NP+ L + + Sbjct: 134 RILRDITQRKQAEIALEDTVSWLRGVMDTVVDGIVTIDETGTVLSFNPAAEHLFGWAAEQ 193 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + +S L+ P ++ A + ++ + + I Sbjct: 194 VVGRN--VSMLMPDPHQGAHDGYIRAYFSSKSGKVGANGREVEGLRRDGTHFPMELAIAH 251 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSILEATSDGIAIINRE 471 + + G+ + + + +++ + + +L +I++ G+A+ + Sbjct: 252 ---MHQGDMLTFIGVIRDISERKRSEKALRDSTTRLSHQANRLQAIIDNMPQGVAVFASD 308 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-------MNHYLTEILSLDLRQT 524 +++ N + ++ G P +I + L + + LT LS +R+ Sbjct: 309 DALIALNESAIRMLGLPKAEITPGTIDISLFMALLAANDTPPGHHSAQLTADLSESIRER 368 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 E + T ++ +R L+ DI++ K + L AK AE+ + Sbjct: 369 PEMVFEHFTPSGLIMEVRSSSMP---GGGLILSFTDITDRKHIEQTLREAKDEAERGNRT 425 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FLA +SHE+RTPL AIIGFSE++K++ FGPL Y Y + I SG +L+++ND+ Sbjct: 426 KNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRAYVDDIHESGMHLLELINDI 485 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SK E+G +L V + + + AI L+ A I + N+P +LAD R + Sbjct: 486 LDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAISLTEDLPPNLPTLLADERRL 545 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 +QI LN+ SNA+ FT GG + I T V +RV DTG+GMT ++++ M+PF Q Sbjct: 546 RQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFV-IRVADTGIGMTPEDVQRVMEPFVQAD 604 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + EG+GLGLPLAKA+V A+ G + S P +GT++ + FP Sbjct: 605 TRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVTVTFP 649 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 47/136 (34%), Gaps = 8/136 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPF 497 + + ++ + L + L + DG+A+ + +++ N ++ + I F Sbjct: 19 PPKGTAQTLDAQRQLLEA-LGNSRDGVALYDSANRLITCNDRYLQMLSPIKDSIRPGARF 77 Query: 498 TVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + + +L LS ++ + +++ Sbjct: 78 EDLMAELAEAEKMEDGWLARKLSGGGLTDATAG-DDKFRDGQWITVNAYAT---SDGGQL 133 Query: 556 LTMHDISEWKQEKNKL 571 + DI++ KQ + L Sbjct: 134 RILRDITQRKQAEIAL 149 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 38/406 (9%), Positives = 109/406 (26%), Gaps = 27/406 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTW 143 ID G + + G A +++G + + H ++ + Sbjct: 170 IDETGTVLSFNPAAEHLFGWAAEQVVGRNVSMLMPDPHQGAHDGYIRAYFSSKSGKVGAN 229 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +GT + P++LA ++ + F G++ + + Sbjct: 230 GREVEGLRRDGT--HFPMELAIAHMH--QGDMLTF--IGVIRDISERKRSEKALRDSTTR 283 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 SH + + +F+ ++ L + + + LL Sbjct: 284 LSHQANRLQAIIDNMPQGVAVFASDDALIALNESAIRMLGLPKAEITPGTIDISLFMALL 343 Query: 263 TSEESSLPEQEDFHTINLNQYTKK------QYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + ++ T +L++ ++ ++F + + Sbjct: 344 AANDTPPGHHSAQLTADLSESIRERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDIT 403 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + +++ + N F AN S L T I + + + P Sbjct: 404 DRKHIEQTLREAKDEAERGNRTKNTFLANISHELRTPL--NAIIGFSEMMKHEIFGPLEP 461 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + ++ S + + + + + + E Sbjct: 462 ASYRAYVDDIHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAE 521 Query: 437 DVDTRINKR------KMEIEVMQLCSILEAT-SDGIAIINREGIIL 475 + + + + + +L I+ S+ + + G + Sbjct: 522 NAAISLTEDLPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVT 567 >gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 108/640 (16%), Positives = 240/640 (37%), Gaps = 67/640 (10%) Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + P + KN+V + + + + V + ++ Sbjct: 89 AAAQRWLGYTAEEVIGKKTPEMIHDKNEVVKVAQELSQELGVTIEPGFEAFVAKARLGQV 148 Query: 272 QED---FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPE 324 +E + + +++ L + K +L + + + Sbjct: 149 EEREWTYIRKDGSRFPVLLSVTPLYDAEKNITGFLGIGSDITARKAAEAALRESEYRYAT 208 Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 P+ F G +AN L + DI G + +L +L ++ Sbjct: 209 LAQTAPVGIFRNDAFGRCIFANERACNLIG-SPLKDILGEGWIQSLHPDDRLR---IVRE 264 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 A R + + + + E G + D + Sbjct: 265 WNQAVQQNLPFKAEYRF---RHPNNVINWVIYQAIPERGSNGEVTGYIGTMTDINDRKRA 321 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++ L LE+ +GI+ ++ +G + N A +K+ GY E+++ + + + Sbjct: 322 EEELL----HLSQALESAVEGISQLDTQGHYIKVNPAYAKITGYKPEEMIGMEWALTVHP 377 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559 + M ++L +E K+ ++++ K + M Sbjct: 378 DDKEKMMAAYHQMLKNGK---VEIEARAMRKDGSAFYKQVVMVKAYNQQQECIGHYCFMK 434 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ ++ + K +F++ VSHE+RTPLT+I G +++ + P G Sbjct: 435 DISDRREVE--------------RLKDEFVSVVSHELRTPLTSISGALDLLASGVV-PAG 479 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + N + + ++ ++ND+LDI +IESGK+ + + + + +++++ +++ A Sbjct: 480 SEDAQRMLNIAANNTDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELA 539 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 + I + S + + AD + Q+ N++SNAI F+P+G + ++ E Sbjct: 540 EQAGIQL--SMSPLSAHLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKGELEK 597 Query: 737 ---------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 ++ V+D G G+ +LE + FGQ+ S + GTG Sbjct: 598 SQTPIPLYPQTPIPLYPHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTG 657 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 LGL + ++++ + G+ + ST +G+ P++ Sbjct: 658 LGLAICRSILQHHGGQIWAESTSGEGSTFSFTLPIFPEEQ 697 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 55/504 (10%), Positives = 142/504 (28%), Gaps = 47/504 (9%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMR--------------LCDVSDILHIDPNNHIGDL 136 G + + + +G A ++IG + ++S L + Sbjct: 80 PDGIILTFNAAAQRWLGYTAEEVIGKKTPEMIHDKNEVVKVAQELSQELGVTIEPGFEAF 139 Query: 137 LKR---QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + + + T +G+ P+ L+ P+Y + +GF G G Sbjct: 140 VAKARLGQVEEREWTYIRKDGS--RFPVLLSVTPLYDAEKNITGFLGIGS--DITARKAA 195 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK 250 A + + +++ L + +K+ + H Sbjct: 196 EAALRESEYRYATLAQTAPVGIFRNDAFGRCIFANERACNLIGSPLKDILGEGWIQSLHP 255 Query: 251 DDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 DD L+ ++ + + F N + ++ E Y+ Sbjct: 256 DDRLRIVREWNQAVQQNLPFKAEYRFRHPNNVINWVIYQAIPERGSNGEVTGYIGTMTDI 315 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + +E + ++ G+ NP++ +T YK + I + L+ Sbjct: 316 NDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAKITGYKPEEMIGMEWALT- 374 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + ++ K + Y ++ + + Q Sbjct: 375 ------VHPDDKEKMMAAYHQMLKNGKVEIEARAMRKDGSAFYKQVVMVKAYNQQQECIG 428 Query: 429 PQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 ++ + D R +R ++ E +L + L + S + ++ G++ + + + Sbjct: 429 HYCFMK-DISDRREVER-LKDEFVSVVSHELRTPLTSISGALDLL-ASGVVPAGSEDAQR 485 Query: 484 LFGYPVE--DILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540 + D L + L+ + + + T + E+ + Sbjct: 486 MLNIAANNTDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQ 545 Query: 541 LRIIIKKLP---FSSCYSLTMHDI 561 L + S ++ Sbjct: 546 LSMSPLSAHLWADSDRIIQVFTNL 569 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 19/157 (12%) Query: 446 KMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQ 503 ++E+ +L +IL + + I +GIIL+ N A + GY E+++ K + ++ Sbjct: 55 QLEVTNQKLQQAILNSANYTIISTTPDGIILTFNAAAQRWLGYTAEEVIGKKTPEMIHDK 114 Query: 504 NTPSVMNHYLTE-------------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 N + L++ + L Q E+ K+ + + + L Sbjct: 115 NEVVKVAQELSQELGVTIEPGFEAFVAKARLGQVEEREWTYIRKDGSRFPVLLSVTPLYD 174 Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + DI+ K + L ++ + Sbjct: 175 AEKNITGFLGIGSDITARKAAEAALRESEYRYATLAQ 211 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 41/413 (9%), Positives = 104/413 (25%), Gaps = 42/413 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G+ +++ K G +MIGM + + + + Sbjct: 341 QLDTQGHYIKVNPAYAKITGYKPEEMIGMEWALTVHPDDKEKMMAAYHQMLKNGKVEIEA 400 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ Y + + Y++ +E G F + + + + + Sbjct: 401 RAMRKDGSAFYKQVVMVKA--YNQQQECIGHYCF----MKDISDRREVERLKDEFVSVVS 454 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 HE++ +S+ + S P + A+ D L +L E Sbjct: 455 HELRTPLTSISGALDLLASGVVPAG----SEDAQRMLNIAANNTDRLVRLINDILDIERI 510 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + Q ++ ++++ LS LSA+ + + Sbjct: 511 ESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLSMSP---LSAHLWADSDRIIQVFT 567 Query: 328 KC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 G + L ++E + L + ++ Sbjct: 568 NLISNAIKFSPTGATVWVTAKILE------KGELEKSQTPIPLYPQTPIPLYPHTPIILF 621 Query: 387 YRSD-RTCIAAS-----------ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D I A + L + + + ++ Sbjct: 622 AVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGGQIWAESTSG 681 Query: 435 PEDV----------DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + + E+ S I + + + + Sbjct: 682 EGSTFSFTLPIFPEEQNKEEEFLHLSHAAPQQPTESISPLILHCDDDLSVRAV 734 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 6/160 (3%) Query: 57 QNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 + + E+ + + + +T + DA G +E IG+ ++G Sbjct: 187 SDITARKAAEAALRESEYRYATLAQTAPVGIFRNDAFGRCIFANERACNLIGSPLKDILG 246 Query: 116 MRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 + +++ + + + + A+P N E Sbjct: 247 EGWIQSLHPDDRLRIVREWNQAVQQNLPFKAEYRFRHPNN--VINWVIYQAIPERGSNGE 304 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 +G+ G + L + E Sbjct: 305 VTGY--IGTMTDINDRKRAEEELLHLSQALESAVEGISQL 342 >gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1232 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 113/652 (17%), Positives = 235/652 (36%), Gaps = 33/652 (5%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 + + ++LD + E K S+ + + Sbjct: 425 LRHLSARAEAEQRARQLDAAIEAMAEGLIIFDTDKSIQSINSAGKRLLGYTDENRDMPFA 484 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 +++ + ++ E+ ++ Q +++ Sbjct: 485 ERLAKYKVRPLVGEIDIENTPIAKALRGEALRKDEFLIEPEPGRQLHLMASASPIRSRQG 544 Query: 298 ESFEYLSHRNHPSLSAYFDE-----------GENLTPETVDKCPIP-FFVYSHGNLFYAN 345 E ++ + S + +D + + L AN Sbjct: 545 EVTGAVAVFQDITESKKLERDRENLIAALQVERARLKALIDNALVGIVLLDKKARLVMAN 604 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P+ + + L P ++ + + S L + Sbjct: 605 PAAEAILGVPLTPGMRHFALEKLDLRQPDGEPLPIQALPVVRAALGGEVHKSVELSAARP 664 Query: 406 NR---ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + N+ + G+ + + + + + + Sbjct: 665 DGRENGGRIHLLASAMPVRNRQGKLKGAVGVFEDVTERKRAEEALRESEEMFHKAFVMSP 724 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 + + I +G L N A S+LFGY ++++ + TP + ++ +I Sbjct: 725 EMLTITTLDGRYLDVNEAFSRLFGYSRDEVMGRRSQEIGHWLTPELRECFVRQIQRGGRV 784 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 Q +E + L L + ++ C DI+E + + ++ AK+ AE + Sbjct: 785 QNMEVEFRTKDGDPCTLLLSADVVRIGGKPCILTVGADITERIRMEGEMRRAKEQAEIAN 844 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KSDFLA +SHEIRTP+ ++G ++ Q+ R EY +S + +L I+ Sbjct: 845 RAKSDFLANMSHEIRTPMNGVMGMIDLSLMQKLPT----RVREYQIMAKKSADHLLSIIG 900 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 D+LD+SKIE+G+M L + + + V + + L A +K + + + +IP +L D Sbjct: 901 DILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTAADKGLKLLHAVDADIPPLLCGDP 960 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILRVRDTGVGMTNYELEK 755 ++Q+ N++SNA+ FT G +++++ ++ V DTG+G+ +L Sbjct: 961 VRLRQVLANLVSNAVKFTHKG-RVLVNVERTGHDLPRDEVRLLFSVSDTGIGIPREKLSL 1019 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + F Q + R GTGLGL ++K +V+ G + S KG+ Sbjct: 1020 IFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIGVESVMGKGSRFFFT 1071 Score = 91.2 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 59/550 (10%), Positives = 135/550 (24%), Gaps = 47/550 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---------HIGDL 136 W ID G L +++ K + A +M + D+ L + + I Sbjct: 42 VWLIDMDGNLLLLNKAAIKNMEQLASEM-PRNMPDLLRALDVRTPDGRRVPPEELPIMQA 100 Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRA 195 L + ++ + ++++A P+ E +G + R Sbjct: 101 LHGE--VDRGRAFLVKAVSDTELFLEVSAAPLLGPQGEVTGALAVARDMTTLRRTARFME 158 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 R ++ + ++ + R + L + + Sbjct: 159 PQVRFTEENPNPVLRVNASGILQYANTASVPFLNALRTDRGEVVPEPLRGAMLRCLEHGE 218 Query: 256 TEKYPLLTSEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + L + + + L+ +KQ L L Sbjct: 219 CGELELAANGRTYIFSLSPVRGDGYVNFYGLDITGRKQIEERLTQQMAHREVLLRASRDM 278 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGL 366 + + + + L F Sbjct: 279 LSETNRESLLRRVLDLAREVAGADMALAGHELRQGLVTVDVFSHAQGIPPCGAPREIPEG 338 Query: 367 STLLDAPKLSDNNAIKPVMLYRSD----------RTCIAASARLHTIQWNRENSLA-MTF 415 + + A + A +I + + + Sbjct: 339 RDNIMERLMGQGQATVRMSRSEWAKFASSLDLPGGHPRLAGLLGASIAHDAGSFCGFLLL 398 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRI----NKRKMEIEVMQLCSILEATSDGIAIINRE 471 + E+ G + + + E QL + +EA ++G+ I + + Sbjct: 399 SHKREGEFTAEDEAFLGQLAALTSLGLRHLSARAEAEQRARQLDAAIEAMAEGLIIFDTD 458 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-----EILSLDLRQTLE 526 I S N A +L GY ++ PF L + + + +L + Sbjct: 459 KSIQSINSAGKRLLGYT-DENRDMPFAERLAKYKVRPLVGEIDIENTPIAKALRGEALRK 517 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 L + + L L + DI+E K+ + + + E Sbjct: 518 DEFLIEPEPGRQLHLMASASPIRSRQGEVTGAVAVFQDITESKKLERDRENLIAALQVER 577 Query: 583 SHKSDFLARV 592 + + Sbjct: 578 ARLKALIDNA 587 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 13/152 (8%), Positives = 38/152 (25%), Gaps = 11/152 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-------VSDILHIDPNNHIGDLLKRQN 141 +D L + +G + + + L I + L + Sbjct: 594 LDKKARLVMANPAAEAILGVPLTPGMRHFALEKLDLRQPDGEPLPIQALPVVRAALGGEV 653 Query: 142 TWYGKTTLWPIEGT--NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + +G + + +A+P+ +R + G G+ + Sbjct: 654 HKSVELSAARPDGRENGGRIHLLASAMPVRNRQGKLKGA--VGVFEDVTERKRAEEALRE 711 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 ++ F + ++ Sbjct: 712 SEEMFHKAFVMSPEMLTITTLDGRYLDVNEAF 743 Score = 44.2 bits (103), Expect = 0.097, Method: Composition-based stats. Identities = 29/279 (10%), Positives = 75/279 (26%), Gaps = 19/279 (6%) Query: 49 FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 FE + +E++ + + FV P T+ G +++E + G Sbjct: 696 FEDVTERKRAEEALRESEEM-FHKAFVMSPEMLTI-----TTLDGRYLDVNEAFSRLFGY 749 Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 +++G R ++ L + ++R + + + L+A + Sbjct: 750 SRDEVMGRRSQEIGHWLTPELRECFVRQIQRGGRVQNMEVEFRTK-DGDPCTLLLSADVV 808 Query: 169 YSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 G V +R ++ + K + + Sbjct: 809 R-----IGGKPCILTVGADITERIRMEGEMRRAKEQAEIANRAKSDFLANMSHEIRT--- 860 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 P + M SL + + + S + + D I + + Sbjct: 861 ---PMNGVMGMIDLSLMQKLPTRVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMELTE 917 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 +++ + + L+ + P + Sbjct: 918 DIFDVRDLVEGTVRPLALTAADKGLKLLHAVDADIPPLL 956 Score = 39.6 bits (91), Expect = 2.2, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 11/130 (8%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------QNTPSVMNHYLT 514 + + +I+ +G +L N+A K ++ + L + V L Sbjct: 38 MLEAVWLIDMDGNLLLLNKAAIKNMEQLASEMP-RNMPDLLRALDVRTPDGRRVPPEELP 96 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNK 570 + +L + L + L L + L D++ ++ Sbjct: 97 IMQALHGEVDRGRAFLVKAVSDTELFLEVSAAPLLGPQGEVTGALAVARDMTTLRRTARF 156 Query: 571 LSHAKKIAEK 580 + + E+ Sbjct: 157 MEPQVRFTEE 166 >gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 935 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 126/751 (16%), Positives = 275/751 (36%), Gaps = 34/751 (4%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLK 138 + + W DA G + E S G +M+G+ + P ++ Sbjct: 35 DASAQIVWMTDADGNVTEDSPSWRAFTGQEIDQMMGIGWTNAVHADDRSPALEAWKLAVQ 94 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + L G YV + ++ + + + G I A + Sbjct: 95 NVEDFVAEYRLRHHLGH--YVRMQVSGVAQRRSDGSIDRWGGMNI--DISEWKQREAESE 150 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------KD 251 + + + +V + ++ + + + Sbjct: 151 YREHHLRDVIDSTGNFIAVLDLDGTMLEVNELALVTGGVSREDVIGKPFWECVWWNFDPK 210 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + +Y + S+ ++ F +++ + Sbjct: 211 VRHQIHEYCQRVAAGESIRCDTPCWSVADGARPVDLSFRPIRDTDGNVTHLVPSGVDILD 270 Query: 312 SAYFDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + E V + G + Y+N +FL +T + + I Sbjct: 271 RQTAVDELRRSDELVRTIAENSTQALVMMDDRGYVTYSNNAFLKMTGFDDTE-IRSRPLH 329 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + R+ A ++ + Q + Sbjct: 330 DLIHHHYPDGRPYPMAECPIDRALPEDFTVRAHEDLFFRKDGSTFEVLCEASPVF-QDGK 388 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + D ++++ K+ + +L + GI ++ ++ + + ++ G Sbjct: 389 PVSTVIEVSDVTDLKLSELKIRLSAERLAVAADVAGLGILHVDLMSQSVTYSAEMKRILG 448 Query: 487 YPVEDILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + + + F+ + + +LS + ++ + K+ +R+ Sbjct: 449 WDDDSAVPSQSAGTPDFVHIDDRERYACHYETMLSANFAKSRSIDYRIVRPDAKVRWVRL 508 Query: 544 IIKKLPFS-----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 K L TM DI+ ++ + L A+ A+ S KS FLA +SHEIRT Sbjct: 509 QTKTLIDEQTGKPDQLVGTMLDITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRT 568 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+TAI+G++E++ ++ I R+G+ +LDI++++LD+SKIE+ K+ ++ Sbjct: 569 PMTAILGYAELLGEHDLPA----EACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMN 624 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 E L V + S++ + A+EK + IR + +PR I +D + +KQI +N++ NAI Sbjct: 625 HELFDLMRVVEDVRSIMDVRASEKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIK 684 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FT G + ++ + + + D+G+GM++ + K +PF Q +S GTGLG Sbjct: 685 FTRQG-HVDLAVRYVD-GHLQFDITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLG 742 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L +++ + G+ Y+ S +G+ Sbjct: 743 LAISRRLAKMLGGEIYVQSQLRQGSTFTATI 773 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 18/167 (10%), Positives = 56/167 (33%), Gaps = 6/167 (3%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 Q G + + + T ++ +++A++ + + + +G + + + G + Sbjct: 6 QIGDDEDILVTLSEITELRRSRELFQLLVDASAQIVWMTDADGNVTEDSPSWRAFTGQEI 65 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + ++ +T + + S + + + +++ Sbjct: 66 DQMMGIGWTNAVHADDRSPALEAWKLAVQN--VEDFVAEYRLRHHLGHYVRMQVSGVAQR 123 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 S + DISEWKQ + + + + +F+A + Sbjct: 124 RSDGSIDRWGGMNIDISEWKQREAESEYREHHLRDVIDSTGNFIAVL 170 >gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 896 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 110/747 (14%), Positives = 245/747 (32%), Gaps = 52/747 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGKTTLW 150 + ++ + + + G L ++ L+I N + ++K + ++ Sbjct: 170 RVDYMNAAACEFSQMSSGEQ-GEYLGEIL--LNIRENGLFDECCQVVKTGQPLVKEALVY 226 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + + + + A + + + + Sbjct: 227 TSLNSQQQSTRVIDIRITKMGDGFVAAW------RDVTEKKQAEAKLRESQQFIERIADT 280 Query: 211 KKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 G V + + M ++ S + + L+ + Sbjct: 281 TPGILYVYDLMKQQNVYTNSQVINLLGYTCQQIKGMDSEFLSTLMHPEDRARFLEHLQLI 340 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGE 319 + L + N N + + + +E Sbjct: 341 NVAENGEILEFEYRMRHANGEWLWFYSRDTVFNRNVDGSPRQIVGTAFDITERKQAEEQL 400 Query: 320 NLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 L+ E +Y N+ + Y + S K Sbjct: 401 RLSNERFQLAAAAVNCLIYDRDIKNNIVSRTEGLTRILGYSLEEA-----DPSAEWWIEK 455 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + ++ + + + + + G Sbjct: 456 VHPEHRERLLNQLTDFFNRENYYTIEYKMRHKDQEYRYVLDQGIIVQDPHGQVVRTVGSV 515 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + + + + + + N +G N+ +L G +E+ Sbjct: 516 TDISERKQAETALRESEERYRYLSDLIPQLVWTCNSQGECEYVNQRWYELTGQMLEEAKG 575 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 +T + + S + T+ L E+ + + + Sbjct: 576 FGWTKVIHPDDLSSVIPEWTQALQRKKP--YEQEMRYQKHDGSYCWHLVRNVAIKDEQGR 633 Query: 554 ---YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + T DI KQ + + A+ AEK + K +F+A VSH++R+PL AI Sbjct: 634 VVKWFGTATDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAI 693 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G++++++ ++ P I+R+ ++ DLL++S+I G++ L PV+ Sbjct: 694 LGWAKLLRTRQLPP---DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPVN 750 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L V ++ A+ K I + + +IP I+ D + Q+ N+LSNAI FTPSGG Sbjct: 751 LVNIVKASVETAYPSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGG 810 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ + + + E++++V DTG+G+ L + Q + G GLGL +A+ Sbjct: 811 RVQVQLAKSDDSEILIQVSDTGLGIKPEFLPHVFDRYRQAH--CTAKHSGLGLGLAIARH 868 Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFP 809 +V+ + G S G I P Sbjct: 869 LVELHGGTIQAHSQGEGLGATFSIKLP 895 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 80/291 (27%), Gaps = 13/291 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD ++ + T +SE + + + W ++ G + +++ + G + Sbjct: 516 TDISERKQAETALRESEERYRYLSDLIP-QLVWTCNSQGECEYVNQRWYELTGQMLEEAK 574 Query: 115 GMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G V + L+R+ + + +G+ Y + + I Sbjct: 575 GFGWTKVIHPDDLSSVIPEWTQALQRKKPYEQEMRYQKHDGS--YCWHLVRNVAIKDEQG 632 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + FG A RL ++ + + + E + S P Sbjct: 633 RVV--KWFGTATDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPL 690 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + L D V L + E + QE LN + L+ Sbjct: 691 NAILGWAKLLRTRQLPPDTVTNA-----LATIERNAQSQEKLLEDLLNMSRILRGQLQLE 745 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 + + + +G +L + P V L Sbjct: 746 VCPVNLVNIVKASVETAYPSAHAKGIHLASVIDESIPP--IVGDTHRLLQV 794 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 47/145 (32%), Gaps = 10/145 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRK 495 ++++ + + +E D I + + N A + + + Sbjct: 133 QELQRSEERFRTSVENMLDCFGIFSAVRYETGEILNFRVDYMNAAACEFSQMSSGE-QGE 191 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 L + + +++ E + S ++ + I I+ + Sbjct: 192 YLGEILLNIRENGLFDECCQVVKTGQPLVKEALVYTSLNSQQQSTRVIDIRITKMGDGFV 251 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580 D++E KQ + KL +++ E+ Sbjct: 252 AAWRDVTEKKQAEAKLRESQQFIER 276 >gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1490 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 123/758 (16%), Positives = 255/758 (33%), Gaps = 52/758 (6%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 + D RF + ++E + +++ V ++ N Sbjct: 759 AIIEDQTEMIARFL----PDSTVLFVNEAYCRYFNIKREEILNKSYSPVIYEADLEKVNQ 814 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + + + T I+G ++ + G Sbjct: 815 LVESM-SIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVG--RDITELKQ 871 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + ++ E D P + K LT ++ + Sbjct: 872 VEGALRESQERLQLALEASGDGIWDWNILTDEVYL-DPQFFQMLGYKADELTSSFSTWEQ 930 Query: 253 VLKTEKYPL--------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYL 303 ++ E L + T + Y + + + + Sbjct: 931 LVHPEDLIWVKERLEKHLENTAVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMI 990 Query: 304 SHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV 357 + + F+ + E +D I F+ + G L N + L S Sbjct: 991 AIHRDINDRKLFEAALLESEEQRRLALDLTHIGFWDWQIPTGQLI-WNENHFTLLGLPS- 1048 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 ++ + +S T + I + + + Sbjct: 1049 ---NNPKPRYEDWRDCIHPEDKERVEQLYTKSIETHTDYESEYRIIHPDG-SVHWLMARA 1104 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + G+ + D + + + + S+L+ + ++ +G I Sbjct: 1105 KAIYDLEGQPVRSLGVLLDITDRKHIEASLRESDRRWQSLLDNVQLVVIGLDLDGYIEYA 1164 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N KL GY +E++L + + FL + E+L + + + + EE+ Sbjct: 1165 NPFFLKLTGYQLEEVLGQYWFDFLNPQEKHPLKIIFKEVLEQNFHPYYQNSVMTKSGEER 1224 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +++ I K DI+E + + K++F++ VSHE Sbjct: 1225 MIAWNNTILKDVAGEPIGTMSIGEDITERDKVE--------------RMKAEFISVVSHE 1270 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPLT++ + +++ +P + ++ +VND+LD+ ++ESGK+ Sbjct: 1271 LRTPLTSMQAAL-SLLSEKIIDPNSPEGEATIQIATEGTDRLVRLVNDILDLERLESGKI 1329 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L ++ + + AI+ +Q AN+ I ++ + +I AD + Q+ N+LSNA Sbjct: 1330 RLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCS--FQIEADADRILQVLTNLLSNA 1387 Query: 716 IHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 I F+P I +S +E V VRD G G+ + L+ FGQ+ S Sbjct: 1388 IKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSAHLDSIFARFGQVDASDSRTK 1447 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + +++V+ + GK + S +G+ P Sbjct: 1448 GGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLP 1485 Score = 123 bits (310), Expect = 1e-25, Method: Composition-based stats. Identities = 60/510 (11%), Positives = 142/510 (27%), Gaps = 28/510 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145 W D++G + ++ +T ++IG L ++ N+I ++K Q T Sbjct: 644 WITDSNGQMLYANQTYYQTFQLLNQEVIGHNLFELYPDEIAQHYLNNIQAVVKSQTTLET 703 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +GT + +P S + G GI + + ++ Sbjct: 704 SRHSLKPDGTMGEFLVYNFLVPNSSDE-QLVG----GIAVDITERKRIEKALQASEIRYR 758 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPL 261 + E + + + + S + D + Sbjct: 759 AIIEDQTEMIARFLPDSTVLFVNEAYCRYFNIKREEILNKSYSPVIYEADLEKVNQLVES 818 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDE 317 ++ E L + + L +N E S + E Sbjct: 819 MSIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQVEGALRE 878 Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + ++ + ++ Y +P F + YK+ D++ + L P+ Sbjct: 879 SQERLQLALEASGDGIWDWNILTDEVYLDPQFFQMLGYKA-DELTSSFSTWEQLVHPE-- 935 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D +K + + T + + E + ++ + + I + Sbjct: 936 DLIWVKERLEKHLENTAVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMIAIHRD 995 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495 D ++ + + Q L+ T G G ++ N L G P + + Sbjct: 996 INDRKLFEAALLESEEQRRLALDLTHIGFWDWQIPTGQLI-WNENHFTLLGLPSNNPKPR 1054 Query: 496 --PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + + T+ + E + + L K + Sbjct: 1055 YEDWRDCIHPEDKERVEQLYTKSIET--HTDYESEYRIIHPDGSVHWLMARAKAIYDLEG 1112 Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAE 579 + DI++ K + L + + + Sbjct: 1113 QPVRSLGVLLDITDRKHIEASLRESDRRWQ 1142 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 42/545 (7%), Positives = 128/545 (23%), Gaps = 66/545 (12%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGK 146 IDA G + K G +G + L+ + + + Sbjct: 487 QIDADGMCIYSNRRWQKMSGQDLTNSLGYGWLEAIHPEDRGLCLRGWKTYLQGKGRFLSE 546 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP------------- 193 L + +V + +A P+ S E G Sbjct: 547 FRLLTPQKKVHWVWVQVA--PMQSATGEIIGH--VCTYEEITARKQAELALQKLNEELEI 602 Query: 194 -------------------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 + + +F + + + Sbjct: 603 RVSQRTVELEQELLRRERIEQEIRHSEARFQAFMAHNPACAWITDSNGQMLYANQTYYQT 662 Query: 235 --RMKNKVSSLTEYYAHKDDVLK-----TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + +V + + D++ + + + + Sbjct: 663 FQLLNQEVIGHNLFELYPDEIAQHYLNNIQAVVKSQTTLETSRHSLKPDGTMGEFLVYNF 722 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346 + + + E ++ + + + N Sbjct: 723 LVPNSSDEQLVGGIAVDITERKRIEKALQASEIRYRAIIEDQTEMIARFLPDSTVLFVNE 782 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 ++ K + + + +P + + + K L S + + Sbjct: 783 AYCRYFNIKREEILNKSY-------SPVIYEADLEKVNQLVESMSIETPMLVIENRVIDG 835 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI- 465 R ++ + + + + + + + + +L LEA+ DGI Sbjct: 836 RGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQVEGALRESQERLQLALEASGDGIW 895 Query: 466 ---AIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLT-EILSL 519 + + + + ++ GY +++ + + + L + + Sbjct: 896 DWNILTDE----VYLDPQFFQMLGYKADELTSSFSTWEQLVHPEDLIWVKERLEKHLENT 951 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKK 576 + + + E K ++ + + DI++ K + L +++ Sbjct: 952 AVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMIAIHRDINDRKLFEAALLESEE 1011 Query: 577 IAEKE 581 Sbjct: 1012 QRRLA 1016 Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 36/320 (11%), Positives = 101/320 (31%), Gaps = 13/320 (4%) Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPETVDKCP 330 E+ + ++ L+ + L + E + P Sbjct: 581 EEITARKQAELALQKLNEELEIRVSQRTVELEQELLRRERIEQEIRHSEARFQAFMAHNP 640 Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 ++ +G + YAN ++ + + + I L + + Sbjct: 641 ACAWITDSNGQMLYANQTYYQTFQLLNQEVIGHN------LFELYPDEIAQHYLNNIQAV 694 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 ++ H+++ + + + + + + GI + + + ++ ++ Sbjct: 695 VKSQTTLETSRHSLKPDGTMGEFLVYNFLVPNSSDEQLVG--GIAVDITERKRIEKALQA 752 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 ++ +I+E ++ IA + +L N A + F E+IL K ++ + + + Sbjct: 753 SEIRYRAIIEDQTEMIARFLPDSTVLFVNEAYCRYFNIKREEILNKSYSPVIYEADLEKV 812 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567 N + + +E + E + + + DI+E KQ Sbjct: 813 NQLVESMSIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQV 872 Query: 568 KNKLSHAKKIAEKESSHKSD 587 + L +++ + D Sbjct: 873 EGALRESQERLQLALEASGD 892 Score = 90.9 bits (224), Expect = 8e-16, Method: Composition-based stats. Identities = 35/372 (9%), Positives = 94/372 (25%), Gaps = 41/372 (11%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L+ + + LL S P I L Q Q +Q + + Sbjct: 406 LEEQLWGLLIVHHCSAPRVWQSSEITLLQRLATQVSIAVQQSELYEQRGRELSERKRIQN 465 Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E L PI + + G Y+N + ++ + + G L + Sbjct: 466 ILQKSEELFRSLSAAAPIGICQIDADGMCIYSNRRWQKMSGQDLTNSL-GYGWLEAI--H 522 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P+ + ++ + ++ + + E + Sbjct: 523 PEDRGLCLRGWKTYLQGKGRFLS----EFRLLTPQKKVHWVWVQVAPMQSATGEIIGHVC 578 Query: 433 IEPEDVDTRINK--------------------------------RKMEIEVMQLCSILEA 460 E + + +++ + + + Sbjct: 579 TYEEITARKQAELALQKLNEELEIRVSQRTVELEQELLRRERIEQEIRHSEARFQAFMAH 638 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 I + G +L N+ + F ++++ + + ++ Sbjct: 639 NPACAWITDSNGQMLYANQTYYQTFQLLNQEVIGHNLFELYPDEIAQHYLNNIQAVVKSQ 698 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAE 579 + +L + + DI+E K+ + L ++ Sbjct: 699 TTLETSRHSLKPDGTMGEFLVYNFLVPNSSDEQLVGGIAVDITERKRIEKALQASEIRYR 758 Query: 580 KESSHKSDFLAR 591 +++ +AR Sbjct: 759 AIIEDQTEMIAR 770 Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 28/302 (9%), Positives = 81/302 (26%), Gaps = 26/302 (8%) Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 I + + + N + L Y+ L D+ L ++ Sbjct: 43 IGVWEWDITTGVMKGNDYYYRLLGYEP----GNLEPSYRLWRNQIYPDDVGSVENKLIQA 98 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + + N+ + + G+ + + + + + Sbjct: 99 LTKKTGYDVEFRVLLKDG-TIRWQQSKGQGIYNEAGQAVRMVGVTFDISERKEREETLAK 157 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + +L + +A+++ ++ ++ ++ + + + N P Sbjct: 158 DEQKLSLFVRCAPVSVAMLDTNMNYIAVSQRWVDVYHLGEIEAILGHCHYEIFPNIPQRW 217 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQE 567 L +L + E + L + + + + DI+E KQ Sbjct: 218 REIHQRGLVGELIKCEEDRFTLPDGTVQWLKWEVQPWRHKTGQIGGIFIFVEDITELKQA 277 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L + L ++ +IR L ++ + R ++ Sbjct: 278 QTTLEQQIQQEY--------LLGEIASDIRRSLN---------LDEVLSRTVH-RVRDFL 319 Query: 628 NY 629 Sbjct: 320 QT 321 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 11/180 (6%), Positives = 49/180 (27%), Gaps = 12/180 (6%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----CPIPF- 333 + ++ + N + ++ + S +E + + P+ Sbjct: 115 DGTIRWQQSKGQGIYNEAGQAVRMVGVTFDISERKEREETLAKDEQKLSLFVRCAPVSVA 174 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + ++ N + ++ + ++ I + P+ + + Sbjct: 175 MLDTNMNYIAVSQRWVDVYHLGEIEAILGHCHYEIFPNIPQ-----RWREIHQRGLVGEL 229 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 I T+ + + ++ + + + + + +E ++ Q Sbjct: 230 IKCEEDRFTLP--DGTVQWLKWEVQPWRHKTGQIGGIFIFVEDITELKQAQTTLEQQIQQ 287 >gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter bemidjiensis Bem] gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache, HAMP, PAS, PAC, PAS and HPT domain-containing protein [Geobacter bemidjiensis Bem] Length = 1229 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 123/645 (19%), Positives = 234/645 (36%), Gaps = 30/645 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 R G + + K +S F Q+ LR + ++ + Sbjct: 235 RALLGFEGAGDTITSRGVPSLSSFKRLNSTGWILGANFPQREAYAPLREAKTLLAVALFI 294 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + VL T + + L + + + + + L+ Sbjct: 295 SLCGTVLVTHLF-MRRLTSPLLTFIGHVQGMGDQERELEPVAISTGDEIGTL--ALAFNR 351 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366 +D+ P+ + G + Y NP+F +T Y+ D + Sbjct: 352 MVQELQRQRTAARELRLAIDQAPVTVMITDPQGGIEYVNPNFTKVTGYQPEDALGRDP-- 409 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + R + + E Sbjct: 410 -REIIGTGCYPEEFYEELWGTLRSGKEWHGEIRNKRKS---GELYWESVSISPVKSPRGE 465 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 G+ + + + + Q+ +LE+T++ I I+ G N + ++L G Sbjct: 466 INNFVGVMEDITQRKRAEEALIRSDEQIRLLLESTAEAIFGIDLMGNCTFANPSCARLLG 525 Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLSL 541 + + +L K + + T + + E + + + ++ ++ Sbjct: 526 HADPDQLLGKNMHLLMHHTTSEGKPNPVQECAAYQVLRGGEGVHKDDDVFWRRDGSSFAV 585 Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 +T DISE K+ + +L A + AE + KS+FLA +SHEIRT Sbjct: 586 EYWSYPQLHDGELVGGVVTFFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRT 645 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ A +G ++++ + Y + ++L ++ND+LD SK+E+G+M L Sbjct: 646 PMNAALGMLYLLQHTEL----SETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLE 701 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 P + +S+ ++ Q EK I T +IP + D + Q+ LN+ SNAI Sbjct: 702 TTPFRMAAVLSDLQTVAQATLREKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIK 761 Query: 718 FTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G ++ ++ EV V DTG+GMT + E PF Q +S + GT Sbjct: 762 FTEKGKVEVEVALLAQEQGEVTLRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGT 821 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSH 815 GLGL +++ +V G+ ++ S P +G+ I P + Sbjct: 822 GLGLAISRELVQLMGGRMWVVSEPGRGSTFSFIAHLALPAASGAQ 866 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 6/133 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146 D G ++ ++ K G +G ++ + + + L+ W+G+ Sbjct: 380 TDPQGGIEYVNPNFTKVTGYQPEDALGRDPREIIGTGCYPEEFYEELWGTLRSGKEWHGE 439 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + + ++ P+ S E + F G++ R D++ Sbjct: 440 IRNKRKSGELYWESVSIS--PVKSPRGEINNF--VGVMEDITQRKRAEEALIRSDEQIRL 495 Query: 207 LHEIKKGHSSVEK 219 L E Sbjct: 496 LLESTAEAIFGID 508 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 22/271 (8%), Positives = 67/271 (24%), Gaps = 19/271 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDI------LHIDPNNHIGDLLK 138 + ID G + + +G+ +++G + + + +L+ Sbjct: 504 IFGIDLMGNCTFANPSCARLLGHADPDQLLGKNMHLLMHHTTSEGKPNPVQECAAYQVLR 563 Query: 139 RQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 W +G++ ++ + P + E G G A Sbjct: 564 GGEGVHKDDDVFWRRDGSSFA--VEYWSYPQL-HDGELVG--GVVTFFDISERKRAEAEL 618 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 R + K + + + +++ S T+ + + Sbjct: 619 IRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTELSETQKSYLEKAQTASG 678 Query: 258 KYPLLTSEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + ++ + E + + ++ E+++ Sbjct: 679 VLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVAQATLREKPIEFVTRCGADIP 738 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342 F + L ++ G + Sbjct: 739 EQLFGDPLRLGQVLLNLASNAIKFTEKGKVE 769 >gi|298241171|ref|ZP_06964978.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554225|gb|EFH88089.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1110 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 107/771 (13%), Positives = 231/771 (29%), Gaps = 46/771 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + +S + W G ++ ++ ++ Sbjct: 365 TDIEDRKRAEQGLKESREHLRVLVETLP-QLVWATGPDGLTEDWNQRYADYFQATPEQLR 423 Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G D + L + T Y +P+ Sbjct: 424 GYGWRQFLHPEEYDHVCAVRNRSLATGEPYA-IEYRLREGQTGAYRWFLARGMPVRDEAG 482 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 + + FG K + L E + Sbjct: 483 QI--LKWFGTCTDIDEQKRAEQQLKSSRESLRVLAETVPQLVWATRPDGGHEYVNQRWCD 540 Query: 231 ----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 + L + + + + + E ++ Sbjct: 541 YTGLTLEQVESDCWVYLQFIHPEDREGNRAQWQQARDMGDMFEHEARLRNSQTGEYRWFL 600 Query: 287 QYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341 +++ + + ++ E + P +V G Sbjct: 601 VRSMPVRDETGQILKWFGTCTDIEDQKRTEQQLKESRESLRVLAETVPQLVWVKRPDGQH 660 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y N + T ++ I+ + P + + R+ T Sbjct: 661 EYTNQRWRDYTGLT-LEQIQSDRWVHLQFIHPDDQEGHR---ASFQRALDTGAMFEYEQR 716 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 N+ + + G D + + + + ++ + Sbjct: 717 LRHAQTGEYRWFLTRAMPMRNEAGQIIKWFGTNTNIEDQKRIEEALRQSQERASVLMNSN 776 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSL 519 GI + + I+ N ++ GY ED+ R + + E+ + Sbjct: 777 IIGIFV-DEGEQIVDANDTFLRMTGYTREDLHAGRLNWMHMTPPEYLAQTRQAHQELAAQ 835 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIA 578 EK + + L + + L + D S K+ + + Sbjct: 836 QSLTPYEKEYVCQ--DGSRLPVLVCGDVLQHHPFQRIAFVLDNSAPKELEQR-------- 885 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K DF++ SHE++TPLTA+ ++ + +R + + ++ + Sbjct: 886 ------KDDFISMASHELKTPLTALKMQTQ-LVRKRLERQAHHEAATALSKVEGPVKQLE 938 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +V +LLD+SKI++G++ E V+LD + E +Q + I++R ++ Sbjct: 939 RLVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTIVVR---GATSCTLV 995 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + Q+ N+LSNAI ++P + + + + V +RVRD G+G+ + +K + Sbjct: 996 GDKDWLGQVFTNLLSNAIKYSPGTETVEMDLSASPE-TVTIRVRDHGLGIPREQRDKIFE 1054 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F ++ +Q G G+GL + +V + G + S KG+ + FP Sbjct: 1055 RFYRVAGPRQRAIPGLGMGLYIVAEIVRGHGGTITVDSEVGKGSTFTVTFP 1105 Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats. Identities = 48/511 (9%), Positives = 116/511 (22%), Gaps = 25/511 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F W G L + L + + G + Y Sbjct: 267 FVWIAGPDGSLTYHNHRLIAYMAMTLERAEGDGWLAGVHPDDRQRVRAAWQTSIQTGVPY 326 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + Y + +P + + G K + Sbjct: 327 EVELRLQDGTSGAYRWFLVRGVPQRNAQGTILHW--VGTCTDIEDRKRAEQGLKESREHL 384 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTE---YYAHKDDVLKTEKY 259 L E ++ + + D + + Sbjct: 385 RVLVETLPQLVWATGPDGLTEDWNQRYADYFQATPEQLRGYGWRQFLHPEEYDHVCAVRN 444 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L + E E +++ + + ++ ++ Sbjct: 445 RSLATGEPYAIEYRLREGQTGAYRWFLARGMPVRDEAGQILKWFGTCTDIDEQKRAEQQL 504 Query: 320 NLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E + P + G Y N + T ++ +E + P+ Sbjct: 505 KSSRESLRVLAETVPQLVWATRPDGGHEYVNQRWCDYTGLT-LEQVESDCWVYLQFIHPE 563 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + N R ARL Q ++ + + G Sbjct: 564 DREGNRA-QWQQARDMGDMFEHEARLRNSQT--GEYRWFLVRSMPVRDETGQILKWFGTC 620 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D + +++++ L + E + + +G TN+ G +E I Sbjct: 621 TDIEDQKRTEQQLKESRESLRVLAETVPQLVWVKRPDGQHEYTNQRWRDYTGLTLEQIQS 680 Query: 495 KPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551 + + + L E + + + Sbjct: 681 DRWVHLQFIHPDDQEGHRASFQRALDTGA--MFEYEQRLRHAQTGEYRWFLTRAMPMRNE 738 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIA 578 + + T +I + K+ + L +++ A Sbjct: 739 AGQIIKWFGTNTNIEDQKRIEEALRQSQERA 769 Score = 132 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 59/513 (11%), Positives = 137/513 (26%), Gaps = 34/513 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D + + IG ++ G L + L P + + + Sbjct: 32 VDDTETIVYANANAQAIIGTAREEVCGTSLWHCAPHLVSTPLYQAVRKTRQTREP-TEVA 90 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLDKKFSH 206 + P+ + ++ P +G ++ +++ P R ++ + Sbjct: 91 YVSPVTNN----WLHVSLTPT---------DKGLALLFQEQLEPLPLQDALSRNEQLYRE 137 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L E ++ + + HLR + + +++ Sbjct: 138 LLESVADGVTIVTPEGLVLDINQRPLADAHLRREEAIGKPLTDLPAWSSDPAVQQHLRAA 197 Query: 264 SEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 +++ E F + T ++ + EYL + E+ Sbjct: 198 IAQAAQGETVRFEAHIHPRTDLSLDMLMTITCHRDASQQVEYLICAGRDITER--KQAED 255 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 VD P ++ G+L Y N + +E A G L Sbjct: 256 ELRPLVDAIPHFVWIAGPDGSLTYHNHRLIAYMAMT----LERAEGDGWLAGVHPDDRQR 311 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 RL + N + G + D Sbjct: 312 VRAAWQTSIQTGVPYEVELRLQDGTS--GAYRWFLVRGVPQRNAQGTILHWVGTCTDIED 369 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ ++ L ++E + +G+ N+ + F E + + Sbjct: 370 RKRAEQGLKESREHLRVLVETLPQLVWATGPDGLTEDWNQRYADYFQATPEQLRGYGWRQ 429 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSC--YSL 556 FL + L+ +E G T + R + + + Sbjct: 430 FLHPEEYDHVCAVRNRSLATGEPYAIEYRLREGQTGAYRWFLARGMPVRDEAGQILKWFG 489 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T DI E K+ + +L +++ + + Sbjct: 490 TCTDIDEQKRAEQQLKSSRESLRVLAETVPQLV 522 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 22/275 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N ++ P V + YAN + + + Sbjct: 1 MSNAKKTERVTVASRETLLTILETLPGALLVVDDTETIVYANANAQAIIGTAREE----V 56 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G S AP L + V R R A + + N + Sbjct: 57 CGTSLWHCAPHLVSTPLYQAVRKTRQTREPTEV-AYVSPVTNN-----WLHVSLTPTDKG 110 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + E ++ + + +LE+ +DG+ I+ EG++L N+ Sbjct: 111 LAL------LFQEQLEPLPLQDALSRNEQLYRELLESVADGVTIVTPEGLVLDINQRPLA 164 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542 E+ + KP T ++ + +L ++ + +T+ + + L + Sbjct: 165 DAHLRREEAIGKPLTDLPAWSSDPAVQQHLRAAIAQAAQGETVRFEAHIHPRTDLSLDML 224 Query: 543 IIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH 573 + I +S + DI+E KQ +++L Sbjct: 225 MTITCHRDASQQVEYLICAGRDITERKQAEDELRP 259 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 47/152 (30%), Gaps = 7/152 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + +R L +ILE + +++ I+ N + G E++ Sbjct: 5 KKTERVTVASRETLLTILETLPGALLVVDDTETIVYANANAQAIIGTAREEVCGTSLWHC 64 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + + + + ++ + L + + +L + Sbjct: 65 APHLVSTPLYQAVRKTRQTREPTEVAYVSPVTN---NWLHVSLTPT----DKGLALLFQE 117 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 E ++ LS +++ + +D + V Sbjct: 118 QLEPLPLQDALSRNEQLYRELLESVADGVTIV 149 >gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1002 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 106/523 (20%), Positives = 202/523 (38%), Gaps = 26/523 (4%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + E + P + +G + Y N + T Sbjct: 344 ERQRWQLALQQSEYQLRLMTETIPQQVWTAQPNGLVDYYNQRWCDFTGKTQEQL--KTES 401 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 ++ L + + R+ + + NQ Sbjct: 402 WEQIIHPEDLPK--VEELWAKAVQTGSDYEVETRMLSGS---GEYHWILGQARPLRNQQG 456 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + G + D + + + ++ + I +G + N+ Sbjct: 457 QIVKWYGTNTDITDHIQAREALRESELNFRTLADTMPQMIWTAKGDGWLEYCNQRWLDYT 516 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G +E+ + L + + +E + +E ++ + Sbjct: 517 GMTLEETQGWGWQPVLHPDDAQICIDIWSESVRTGQNYQIEYRLR-RARDGQYRWHLGRA 575 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSH 594 L + + DI + K+ + L +A + AE + K +FLA +SH Sbjct: 576 FPLRNQKGQIIKWFGSCTDIDDHKRSEEALRNALQEKQAAYEAAETANRVKDEFLAILSH 635 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL I+G+S+++ + G L + E I+R+ L +D+++DLLD+S+I GK Sbjct: 636 ELRTPLNPILGWSQLL---KTGKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGK 692 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + L+ V+L + +S A+ + L A+ K+I ++T NI ++ D ++QI N+LSN Sbjct: 693 LTLNVTTVNLADIISAALETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSN 752 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI FTP GG++++ + V D G G+ L + F Q S + G Sbjct: 753 AIKFTPQGGEVVVQLEQI-GSMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGL 811 Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHP 816 GLGL + + +V+ + G S +GT +++I PL +S P Sbjct: 812 GLGLAIVRHLVELHGGTVEADSPGEGQGTTLKVILPLI-SSLP 853 Score = 83.9 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 28/306 (9%), Positives = 74/306 (24%), Gaps = 17/306 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144 W +G + ++ G ++ + + + ++ + + Sbjct: 370 VWTAQPNGLVDYYNQRWCDFTGKTQEQLKTESWEQIIHPEDLPKVEELWAKAVQTGSDYE 429 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +T + G+ Y I A P+ ++ + + +G R + + F Sbjct: 430 VETRML--SGSGEYHWILGQARPLRNQQGQIV--KWYGTNTDITDHIQAREALRESELNF 485 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKY 259 L + K + L + + Sbjct: 486 RTLADTMPQMIWTAKGDGWLEYCNQRWLDYTGMTLEETQGWGWQPVLHPDDAQICIDIWS 545 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + ++ E + L+N + ++ +E Sbjct: 546 ESVRTGQNYQIEYRLRRARDGQYRWHLGRAFPLRNQKGQIIKWFGSCTDIDDHKRSEEAL 605 Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + Y FL + ++ + G S LL KL + Sbjct: 606 R------NALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGWSQLLKTGKLDKD 659 Query: 379 NAIKPV 384 + + Sbjct: 660 KTDEAL 665 >gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099] Length = 1391 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 131/759 (17%), Positives = 263/759 (34%), Gaps = 57/759 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146 +DA + I+ IG ++ IDP +R T Sbjct: 326 LDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELMEASRAIDPYGADELAWQRHTTEREA 385 Query: 147 TTLWPIEGTNL-----YVPIDLAALPIYSRNR-----EFSGFRGFGIVHVNRVDNDPRAL 196 + G+ + + P+ R + + +G + + L Sbjct: 386 EIRAGVAGSKQLPHNDGRTLVASLAPLPGGKRLISYVDVTDMKG----RETEAQDARKHL 441 Query: 197 GKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPH--------LRMKNKVSSLTEY 246 L+ + + + ++ D P L + Sbjct: 442 ASVLESLPAGVIIYDRDDKFVFANRKLQDTLPALKPFWQPGCSFREALEFGQSIGYFRSS 501 Query: 247 YAHKDDVLKTEKYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS--KESFEY 302 D L + L + + +N + + Y + + + Sbjct: 502 GDAGIDRLYEVEPEHWLDSMLARYRLPNSSYERLNADGRWYQVYDMRTDDGTFIGVRVDI 561 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361 ++ + +L +D+ P+ F+ + ++ + N ++ LT D I Sbjct: 562 TDIKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLSIEFVNKAWCALTGIAKEDVIG 621 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L + ++ + MT Sbjct: 622 RTD--RELFGTQDAEGYSHDDTQVVVTGKG----IEVEEPVTHRDGTVRQLMTRKSRLV- 674 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTN 478 ++ G + D + ++ +E + + S+++ I + N Sbjct: 675 -ATDGSVHLVGSSTDITDVKAREKALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVN 733 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + L G ED + K ++ + + L + + + + E + + Sbjct: 734 KGWCDLTGLSREDAIGKTDIEIFGEDGEAFVAGDLAVLRTGETQ---EVEETVRLADGSV 790 Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + S + DI+E K + +LS A++ A KS+FLA +SHE Sbjct: 791 RHQFARKGAMIASDGSLYLIGSTTDITELKMREAELSEARQRAVLADRAKSEFLANMSHE 850 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ ++G +E++ +P+ + + I +SGN +L I+ND+LD SKI++G+M Sbjct: 851 IRTPMNGVLGMAELLAKSNL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQM 906 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSN 714 L P +L EA+ + +LV A EK + + + + + D+ ++QI N+L N Sbjct: 907 VLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGN 966 Query: 715 AIHFTPSGGQ-IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 A+ FT G + ++ + + V DTG+G+ +L+ + F Q+ S R E Sbjct: 967 AVKFTDEGHVLVDVTGERVPTGTRLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHE 1026 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFP 809 GTGLGL + +V+ G + S KG+ + P Sbjct: 1027 GTGLGLAITSRLVELMGGTIGVESAEGKGSTFWFTVTLP 1065 Score = 137 bits (346), Expect = 6e-30, Method: Composition-based stats. Identities = 63/554 (11%), Positives = 135/554 (24%), Gaps = 64/554 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143 W DA +S G ++G D + + L L+ + + Sbjct: 48 IWETDAELRFSWLSPTYQAATGIDPADVLGRFRFDFLNQDLKGSRSAAAHLEDLQARRPF 107 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG------------IVHVNRVDN 191 G + + + P + +F+G+RG G + + Sbjct: 108 RDFVYELKAGGADCR-WVLTSGFPRFDNEGKFAGYRGIGRNVTTLAGAFETVEQNPLSGS 166 Query: 192 DPRALGKRLDKKFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMK-------- 237 DP L++ +H + K V K D+ S + Sbjct: 167 DPDRHLADLERTMDAMHMGVVLLDAKLDTLIVNKAYRDLSSIPDGAVTVGAPFSRLMELN 226 Query: 238 -NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 L + + + + T L Sbjct: 227 RRNGIYGDIDEQQWQRYLASRIEEIRAGSVAPREFVHASGRTMMFSVTALSGGKRLLTYY 286 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355 + + S +A E VD+ PI V N +F + Sbjct: 287 EVTELKRRDAEIESANAKIAETFVNLRTMVDEMPIGVLVLDADMRAEVINSAFYDFWRID 346 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH---TIQWNRENSLA 412 + + + + A + + A + + N +L Sbjct: 347 PGRAGIGSAFRELMEASRAIDPYGADELAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLV 406 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + P + + + D + + + + L S+LE+ G+ I +R+ Sbjct: 407 ASLAPLPGGKRLISYV-------DVTDMKGRETEAQDARKHLASVLESLPAGVIIYDRDD 459 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---- 528 + NR + P +P F E Y + + E Sbjct: 460 KFVFANRKLQDTL--PALKPFWQPGCSFREALEFGQSIGYFRSSGDAGIDRLYEVEPEHW 517 Query: 529 --------------TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + + + + DI++ K + L + Sbjct: 518 LDSMLARYRLPNSSYERLNADGRWYQVYDM---RTDDGTFIGVRVDITDIKSREAALRDS 574 Query: 575 KKIAEKESSHKSDF 588 + + + Sbjct: 575 MRQIDLFRHVMDEL 588 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 37/442 (8%), Positives = 108/442 (24%), Gaps = 37/442 (8%) Query: 171 RNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 E G RG G + P + L E + Sbjct: 3 EADEAIGARGKRGPDKPVHRGDAPPCADRDSPDALRQLLEAGSDWIWETDAELRFSWLSP 62 Query: 230 ---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 + + + + ++D L ++ P ++ + + + Sbjct: 63 TYQAATGIDPADVLGRFRFDFLNQDLKGSRSAAAHLEDLQARRPFRDFVYELKAGGADCR 122 Query: 287 QYFGTL-----------------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + +N + + + + +P + D T+D Sbjct: 123 WVLTSGFPRFDNEGKFAGYRGIGRNVTTLAGAFETVEQNPLSGSDPDRHLADLERTMDAM 182 Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK---LSDNNAIKPVM 385 + + + N ++ L+ A + + D + + Sbjct: 183 HMGVVLLDAKLDTLIVNKAYRDLSSIPDGAVTVGAPFSRLMELNRRNGIYGDIDEQQWQR 242 Query: 386 -LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L A S ++ + + ++ D + Sbjct: 243 YLASRIEEIRAGSVAPREFVHASGRTMMFSVTALSGGKRLLTYYEVTELKRRDAEIESAN 302 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 K+ + L ++++ G+ +++ + N A + L + Sbjct: 303 AKIAETFVNLRTMVDEMPIGVLVLDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELMEA 362 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITL--------GSTKEEKLLSLRIIIKKLPFSSCYSL 556 + ++ + E+ E + + L + + Sbjct: 363 SRAIDPYGADELAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLVASLAPLP---GGKRLI 419 Query: 557 TMHDISEWKQEKNKLSHAKKIA 578 + D+++ K + + A+K Sbjct: 420 SYVDVTDMKGRETEAQDARKHL 441 >gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 1001 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 130/756 (17%), Positives = 262/756 (34%), Gaps = 63/756 (8%) Query: 87 WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D L SEE+ + G + ++ ++ D + K Sbjct: 266 WRWDLITHTLTY-SEEMRRIYGYQISTIESNHDSLLAMVIPEDRERVESIVRKALVGTAD 324 Query: 146 KTTLWPI--EGT------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + +G V + PI G+ Sbjct: 325 EVIYRIKLHDGHIRTIRAQWEVSVTNDGRPI----------EMVGMAQDITEQVLIEQQS 374 Query: 198 KRLDKKFSHLHEIKKGHSS---VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + K+ + E S +E + S ++ + + + + Sbjct: 375 LDNENKYKLITENSLDFISRSTIECSTFLYCSPSCYSLLGYRPEEMVGTSAFDYVYAEDI 434 Query: 255 KTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + + L F + + + + E +S S Sbjct: 435 PSLQEYFSSCLVGKLLTPITFRYIHKDGRHIWFEVNCKYISTQDNQRNEIISIARDISER 494 Query: 313 AYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + E E + P + + G+ AN + LT Y + + Sbjct: 495 KMMEFKLKENEQRYRSLFEYNPSAVYSMNLDGDYLTANHNLQELTGYTLDELVG------ 548 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P +++ + + + + + S L I + T + E Sbjct: 549 -MYFGPIVAEKDMARTLYHFNLAKEGRPQSYDLTIIHKDGHPIEINTINIPIFVD--DEV 605 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + GI + + +++ +L +L S+GI ++ G + N A + + Y Sbjct: 606 VGVYGITRDITERIRTMEEIKKLSRELSLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDY 665 Query: 488 PVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 + +P +++ + L + + + +I L + Sbjct: 666 EPLTTIGRPCDQIVKEIRHDGTFYRGEDSPLVQAVRQGTPLSRAEIVLWR-GDGTSFLAD 724 Query: 543 IIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + DI++ + ++ AK+ AE+ K++FL +SHE+RTP Sbjct: 725 YQVNPIWDQGERKGAVMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTP 780 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + IIG E++K + Y + + S +L I+N++LD SKIE+G M L+ Sbjct: 781 MNGIIGMIELLKTTEL----DEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNS 836 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718 EP+ + + + L A EK +L+ S +P ++ D ++Q+ +N++SNAI F Sbjct: 837 EPIDVQALLESIVDLFSAKAKEKGLLLSCSINTTVPDVIIGDGLRLRQVLVNLISNAIKF 896 Query: 719 TPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 T G I +S T + +V+DTG+G+ + + F Q+ S + G Sbjct: 897 TNEGS-ISMSVEGLHRTGTQEFTLAFQVKDTGIGIPAEQQHQLFMSFSQLHPSLNRKYGG 955 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGL ++K +V+ G + S G+ P Sbjct: 956 TGLGLAISKKLVELMGGVIGVESREQLGSSFYFTIP 991 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 47/509 (9%), Positives = 133/509 (26%), Gaps = 35/509 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G ++ IS +G +M G + + G L + + Sbjct: 155 DGIIEYISPSATDILGYTQEEMTGKHRAAFYHEVDSEQMKEPGKLFS--DDHSFIRRIRH 212 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--- 208 G Y+ + + I E S + I + + Sbjct: 213 KNGH--YLWFETSFQLIRGTKGEIS--KVLAIARNITKRKIDEDTLAQAQRIAKIGSWRW 268 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ + +E I+ Q + ++ + + + + + E Sbjct: 269 DLITHTLTYSEEMRRIYGYQISTIESNHDSLLAMVIPEDRERVESIVRKALVGTADEVIY 328 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + D H T + + N E + + ++ Sbjct: 329 RIKLHDGH-----IRTIRAQWEVSVTNDGRPIEMVGMAQDITEQVLIEQQSLDNENKYKL 383 Query: 329 CPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + Y +PS L Y+ + + + +++ Sbjct: 384 ITENSLDFISRSTIECSTFLYCSPSCYSLLGYRPEEMVGTSA------FDYVYAEDIPSL 437 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSL-AMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + I + + + + + I + + + Sbjct: 438 QEYFSSCLVGKLLTPITFRYIHKDGRHIWFEVNCKYISTQDNQRNEI--ISIARDISERK 495 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + K++ + S+ E + +N +G L+ N + +L GY +++++ F + Sbjct: 496 MMEFKLKENEQRYRSLFEYNPSAVYSMNLDGDYLTANHNLQELTGYTLDELVGMYFGPIV 555 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTM 558 + + ++ + K+ + + I + Sbjct: 556 AEKDMARTLYHFNLAKEGRPQS---YDLTIIHKDGHPIEINTINIPIFVDDEVVGVYGIT 612 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSD 587 DI+E + ++ + + S+ Sbjct: 613 RDITERIRTMEEIKKLSRELSLLLNTVSE 641 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 49/494 (9%), Positives = 143/494 (28%), Gaps = 24/494 (4%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-TLWPIE 153 + ++++ + I + ++ + ++ + + N + L + + K + Sbjct: 31 VVKVNDRFCELIESERSALLQRKPSEIQVLSDLSINQTLLSLTNDRTSRLKKDSFFIRQD 90 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR--LDKKFSHLHEIK 211 G+ V +D++ L G + + + + D+ + + + Sbjct: 91 GSRFSVSVDISLL-----EHPSPGEAPWILCCLGQETVQKVTSLPVIKNDELLALIFKSG 145 Query: 212 KGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + S+ E I + + + H+ D + ++ L S++ S Sbjct: 146 QDLISISSEDGIIEYISPSATDILGYTQEEMTGKHRAAFYHEVDSEQMKEPGKLFSDDHS 205 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 N + + F ++ E + L+ + + ++ Sbjct: 206 F--IRRIRHKNGHYLWFETSFQLIRGTKGEISKVLAIARNITKRKIDEDTLAQAQRIAK- 262 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + + + + + I +LL D ++ ++ Sbjct: 263 ----IGSWRWDLITHTLTYSEEMRRIYGYQISTIESNHDSLLAMVIPEDRERVESIVRKA 318 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 T ++ I+ + + + + G+ + + + +++ Sbjct: 319 LVGTADEV---IYRIKLHDGHIRTIRAQWEVSVTNDGRPIEMVGMAQDITEQVLIEQQSL 375 Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + I E + D I+ E L + + L GY E+++ ++ Sbjct: 376 DNENKYKLITENSLDFISRSTIECSTFLYCSPSCYSLLGYRPEEMVGTSAFDYVYAEDIP 435 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565 + Y + L L + + + + DISE K Sbjct: 436 SLQEYFSSCLVGKLLTPITFRYIHKDGRHIWFEVNCKYISTQDNQRNEIISIARDISERK 495 Query: 566 QEKNKLSHAKKIAE 579 + KL ++ Sbjct: 496 MMEFKLKENEQRYR 509 Score = 74.7 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 41/325 (12%), Positives = 103/325 (31%), Gaps = 38/325 (11%) Query: 323 PETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + +K P+ + + + N F L + + ++ +L ++ Sbjct: 11 EQMFNKLPLGAILISAVDEQVVKVNDRFCELIESERSALLQRKPSEIQVLSDLSIN---- 66 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 +L ++ I+ + I + E ++ Sbjct: 67 --QTLLSLTNDRTSRLKKDSFFIRQDGSRFSVSVDISLLEHPSPGEAPWILCCLGQETVQ 124 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ + L I ++ D I+I + +GII + + + + GY E++ K F Sbjct: 125 KVTSLPVIKNDELLALIFKSGQDLISISSEDGIIEYISPSATDILGYTQEEMTGKHRAAF 184 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + M I K L + + + Sbjct: 185 YHEVDSEQMKEP-----GKLFSDDHSFIRRIRHKNGHYLWFETSFQLIRGTKGEISKVLA 239 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +I++ K +++ L+ A++IA+ S ++ +T + +SE ++ Sbjct: 240 IARNITKRKIDEDTLAQAQRIAKIGSWRW---------DL---ITHTLTYSEEMRR---- 283 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIV 641 Y + I+ + + +L +V Sbjct: 284 -----IYGYQISTIESNHDSLLAMV 303 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 41/408 (10%), Positives = 110/408 (26%), Gaps = 34/408 (8%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F ++P ++++ G + L + G +++GM + + + Sbjct: 512 FEYNPSA-----VYSMNLDGDYLTANHNLQELTGYTLDELVGMYFGPIVAEKDMARTLYH 566 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDN 191 +L K T+ +G PI++ +PI+ + E G +GI Sbjct: 567 FNLAKEGRPQSYDLTIIHKDG----HPIEINTINIPIFVDD-EVVGV--YGITRDITERI 619 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHK 250 K+L ++ S L + L + + Sbjct: 620 RTMEEIKKLSRELSLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDYEPLTTIGRPCDQIV 679 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 ++ + ++ + + + + + + + Sbjct: 680 KEIRHDGTFYRGEDSPLVQAVRQGTPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGA 739 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + + + D+ I + A FL + ++ + G+ LL Sbjct: 740 V--------MVFRDITDEKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELL 791 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 +L ++ +L S + + + ++ + P + Sbjct: 792 KTTELDEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNSEPI-------DVQAL 844 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + ++ + + SI D I + N Sbjct: 845 LESIVDLFSAKAKEKGLLLSC----SINTTVPDVIIGDGLRLRQVLVN 888 >gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10] Length = 642 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 115/499 (23%), Positives = 226/499 (45%), Gaps = 30/499 (6%) Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + L PI V G+ NP+ + Y + + S+ Sbjct: 10 QALFEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPA------TDYIYSE 63 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 K +L D + + + A + + +Q + + Sbjct: 64 CINNKDKLLRSLDEASSTIAVEKQLVHKDGNVIWASIHVSLVRDDQDQTPLFFISQIVDI 123 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D+++ ++K++ + + S+ + D I N EG I++ N+ +L G+ + +++ Sbjct: 124 TDSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKI 183 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCY 554 + + + + + + ++ + K+ + + + + + + Sbjct: 184 SNLIGERNLARVLSSAADYVAAEKGINCIH-----HKDGHQVEVLATLAPIVIHGKNVGF 238 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + D++E K+ L K+ AEK + KS+FLA +SHEIRTP+ +IG +++I Sbjct: 239 YIIAKDMTEQKR----LIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE 294 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY I +SG +L+I+ND+LD SKIESG+ L E SL A+SE +++ Sbjct: 295 L----DEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNM 350 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I + TS A+++P ++ D+ ++Q+ +N+LSNAI FTP+G + IS Sbjct: 351 ILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCVR 409 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + V DTG+G+ + ++ + +PF Q+ + + EGTGLGL + K +V Sbjct: 410 DQANSKLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMG 469 Query: 790 GKFYIFSTPA-KGTLIEII 807 G + P +G++ Sbjct: 470 GDIWYERNPNQQGSVFTFT 488 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 42/144 (29%), Gaps = 4/144 (2%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150 G ++ K G +++ D I+ + + L + +T + L Sbjct: 30 EGSWISVNPAACKMFGYTDEELMAQPATDYIYSECINNKDKLLRSLDEASSTIAVEKQLV 89 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G ++ I ++ + + F IV + ++++ L + Sbjct: 90 HKDGNVIWASIHVSL--VRDDQDQTPLFFISQIV-DITDSKVAEQKLQESIERYTSLKKY 146 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL 234 + I + L Sbjct: 147 NHDAIISFNLEGRIINGNQMAEQL 170 >gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1680 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 123/745 (16%), Positives = 271/745 (36%), Gaps = 52/745 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 ++ GY+ +E + +G + + L D + I + + + +T Sbjct: 962 LNQQGYVVLANESFARMLGRTPEETARLHLRDWEAQFTREEIEQKITNSELCDDIF--ET 1019 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ ++++A P+ + I L + + L Sbjct: 1020 RHRRKDGSIY--DVEISATPVRWGSE----IVQLCICRDISDRKQAETLLAEEVSRSNAL 1073 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + + ++ + + +++SL + + + + Sbjct: 1074 FESSRDGIVILNQQGFVIRGNASFAKMLGYPPEEITSLHVIDWEAQLTEEEVQQKIAQTS 1133 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 SS + N + Y + L + + A E Sbjct: 1134 WSSQTFETRHRRKNGSIYDVEISANPLNWGGETVLLCICRDISDRKEAEAALRHSEARYQ 1193 Query: 324 ETVDKCPIPFF---VYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V P + +Y +G Y +P L + + I+ ++ LS Sbjct: 1194 NLVVTVPGVIYDYVIYPNGSERFVYMSPRCRELLETEPDMLIQDFSVFWRMVHPQDLSLI 1253 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 K L ++R L + + + +T P + +G+ + Sbjct: 1254 QQSKESALENNERFLTEIRLVLPSGRI---KWIKITSQPTPNPHADG-GKRWSGMMVDIS 1309 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + + + + S E+ G+ +++ G L N+A ++ GY E++L K F Sbjct: 1310 DRKGAELALRDSEERFRSAFESAGVGMVLVSLNGQFLKVNQAFCEMLGYSEEELLLKNFQ 1369 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSC--Y 554 ++ +++S +T + + ++ L + + + + Sbjct: 1370 EITYPEDLAMSLEGFKQLVS-GQSKTYQTEKRYISASGSIIWGFLTVSVIQDQDERPLYF 1428 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI+E + + K++F++ VSHE+RTPLT++ G + N Sbjct: 1429 VTQVQDITERR--------------ELDRLKTEFISVVSHELRTPLTSMRGAL-GLLNAG 1473 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + R+ + ++ +VND+LD+ ++ESGK+ L E +D +++A+ Sbjct: 1474 VLQEEPETVEHMLKIVLRNCDRLIRLVNDILDLERLESGKVRLIKEVCQVDNLLTDAVET 1533 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A E I I + + A ++ Q N+LSNAI F+ G +I ++ ++ Sbjct: 1534 ISAMATEASITI--ELTSISAYVWASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFND 1591 Query: 735 EE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + V+ V+D G G+ +L+ F Q+ S + GTGLGL + ++++ Sbjct: 1592 PDSTAQTPSFVLFSVKDQGRGIPTNKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQ 1651 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811 + G+ ++ S +G+ PL+ Sbjct: 1652 QHNGRIWVDSILGEGSTFYFTVPLF 1676 Score = 165 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 65/608 (10%), Positives = 174/608 (28%), Gaps = 60/608 (9%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 Q Q+S+ T + F I R + G + E+++ + G Sbjct: 418 TASQLQQSLRRTETALQASQKKFTTIFRMSPDPIVISYWPDGRILEVNDRFIEFSGYSRE 477 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 ++ +++ + + +LLKR + + TL G + L+A Sbjct: 478 ELTDHTPLELNVFPNAQQYRNFQELLKRIGFAYSQEITLRLKSGE--VRTVLLSAENHSI 535 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS- 229 +E+ + K KK + + + + D + Sbjct: 536 EQQEYI----IATIRDVTQSKQLELALKDSRKKLNQILDNTFASIFSFRVFDDQTWTYNY 591 Query: 230 ----------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 P M ++ ++ D + + +E + + + F N Sbjct: 592 QSIGSLILFGYTPQEIMADQGLWMSRVVPEDRDTIILPLFERFATEGT-ITVEYRFRHKN 650 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + + +++S +++ + + ++ ++L + F+ Sbjct: 651 GSIRWISTTYTSYRDSSIDAWNVTGVSIDISDRKQIELALEQQKDLRESIFENSSDAIFL 710 Query: 336 YSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + + N + L + S DD+ G L ++ V + Sbjct: 711 VDPQSLLIIDCNRRVVELFEADSKDDLIGIEG--HTLQKQPFTEEEIKAIVAQMEAKGF- 767 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + I + + K + + + + ++ + Sbjct: 768 --WEREIEYITFKGQEFWG---NLAAKPIGVGNQILHLVRVTDITERKQAVISLQDSEAR 822 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +I++ ++ I+ +G IL N A + F +++ + + + + + Sbjct: 823 YRAIVQDQTEFISRFLPDGTILFINEAYCRYFDVNASEVIGTTYQPVIFEPDREQVMEQV 882 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 + + +E + ++ + I L Y DI E K+ + Sbjct: 883 NSLSKENPITIIENRVIV---NGQIRWTQWINHILFDEQGNFIEYQSVGRDIQELKEAEA 939 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L+ + + ++ L + V+ Q + L N + Sbjct: 940 LLA---EEVSRSNALFESSLDGIV---------------VLNQQGYVVLANESFARMLGR 981 Query: 630 IDRSGNLV 637 + Sbjct: 982 TPEETARL 989 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 44/481 (9%), Positives = 134/481 (27%), Gaps = 30/481 (6%) Query: 105 TIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 G +++ G+ + V + + + T + G+ ++ Sbjct: 599 LFGYTPQEIMADQGLWMSRVVPEDRDTIILPLFERFATEGTITVEYRFRHKNGSIRWIST 658 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 + R+ + G+ ++ + E + + Sbjct: 659 TYTSY----RDSSIDAWNVTGVSIDISDRKQIELALEQQKDLRESIFENSSDAIFLVDPQ 714 Query: 222 YDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277 + + K+ + + + K + E ++ E+ + + Sbjct: 715 SLLIIDCNRRVVELFEADSKDDLIGIEGHTLQKQPFTEEEIKAIVAQMEAKGFWEREIEY 774 Query: 278 I--NLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 I ++ + N + E V Sbjct: 775 ITFKGQEFWGNLAAKPIGVGNQILHLVRVTDITERKQAVISLQDSEARYRAIVQDQTEFI 834 Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + G + + N ++ + + I P + + + + + S Sbjct: 835 SRFLPDGTILFINEAYCRYFDVNASEVIGTTY-------QPVIFEPDREQVMEQVNSLSK 887 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + + N + ++ + + + + + + + EV Sbjct: 888 ENPITIIENRVIVNGQIRWTQWIN-HILFDEQGNFIEYQSVGRDIQELKEAEALLAEEVS 946 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + ++ E++ DGI ++N++G ++ N + +++ G E+ R + Sbjct: 947 RSNALFESSLDGIVVLNQQGYVVLANESFARMLGRTPEETARLHLRDW----EAQFTREE 1002 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNK 570 + + ++ T K+ + + I + + S DIS+ KQ + Sbjct: 1003 IEQKITNSELCDDIFETRHRRKDGSIYDVEISATPVRWGSEIVQLCICRDISDRKQAETL 1062 Query: 571 L 571 L Sbjct: 1063 L 1063 >gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1117 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 107/655 (16%), Positives = 226/655 (34%), Gaps = 32/655 (4%) Query: 185 HVNRVDNDPRALGKR----LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHL 234 R ++++ L E + + P Sbjct: 325 RTVRRQTARLEELLEAVGQSERRYRELVENAACLIVRLDLLGRVVFCNAWGQRVFGLPLE 384 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 RM + D L + + + N L Sbjct: 385 RMLGRDIDALGGAPGSDASESWGAILAVLAEAPDGARTLDRRHIGENGRAIWITWSVIAL 444 Query: 293 QNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPS 347 ++ E+L E V + + Y +P Sbjct: 445 RDPKGLPTEFLCVGNEITQRKQAEKALAASEARYALVVRASNDGIWDWDLRTDAVYFSPR 504 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 +L + + + D A+ + + + ++ Sbjct: 505 YLEILGLAPDALSPTVTEWNQRIHPD---DVEAVLRENRRCATGETDSFVVE-YRMRHAD 560 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + ++ + + G + + ++ + QL I + G+ + Sbjct: 561 GSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDETALRESQDQLAKIFRLSPVGLCV 620 Query: 468 -INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 R+ ++ N +++FGY ++ + P + E+++ E Sbjct: 621 SAQRDSRVVDINENGARMFGYEKAAVIGRESLHLGVWPHPEDRRALVDELVAKGSIVGKE 680 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 L ++ + + +C + DI+E K + L AK+ AE + K+ Sbjct: 681 LELLHQNGSTVVVLYSAVPIQAYGETCLLSVLVDITERKAIERSLRRAKEAAEAANRAKT 740 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FL+ +SHEIRTP+ I+G ++ + P + + I+ +G +L ++ND+LD Sbjct: 741 EFLSTMSHEIRTPMNTILGMAQALSAADLPP----KQTQAIRAIEIAGGSLLTLLNDILD 796 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +S+IESG + + +P + + + +++ A K I +R A ++P + ++ Sbjct: 797 LSQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSVSLSPDRIR 856 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFG 761 Q+ +N+L NA+ FT G I+++ + + + L VRDTG+G+ +L F Sbjct: 857 QVLVNLLGNAVKFTHQGS-IVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKLPVIFDRFT 915 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 Q + G GLGL ++K +VD G + + +G+ + PL P Sbjct: 916 QADATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLPLRPVHTP 970 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 25/298 (8%), Positives = 78/298 (26%), Gaps = 11/298 (3%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352 N L + E E V+ + G + + N + Sbjct: 320 NALLRRTVRRQTARLEELLEAVGQSERRYRELVENAACLIVRLDLLGRVVFCNAWGQRVF 379 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + L AP + + ++ ++ A + I ++ Sbjct: 380 GLPLERMLGR--DIDALGGAPGSDASESWGAILAVLAEAPDGARTLDRRHI-GENGRAIW 436 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 +T+ + + E + ++ + + ++ A++DGI + Sbjct: 437 ITWSVIALRDPKGLPTEFLCVGNEITQRKQAEKALAASEARYALVVRASNDGIWDWDLRT 496 Query: 473 IILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 + + ++ G + + + + + + + + + Sbjct: 497 DAVYFSPRYLEILGLAPDALSPTVTEWNQRIHPDDVEAVLRENRRCATGETDSFV-VEYR 555 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSH 584 + + + M DI+ K+++ L ++ K Sbjct: 556 MRHADGSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDETALRESQDQLAKIFRL 613 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 31/376 (8%), Positives = 85/376 (22%), Gaps = 27/376 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWY 144 +D G + + + G +M+G + + D + I +L Sbjct: 361 RLDLLGRVVFCNAWGQRVFGLPLERMLGRDIDALGGAPGSDASESWGAILAVLAEAPDGA 420 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 I + I + + + + F G + + ++ Sbjct: 421 RTLDRRHIGENGRAIWITWSVIALRDPKGLPTEFLCVG--NEITQRKQAEKALAASEARY 478 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + + + D P + + + E Sbjct: 479 ALVVRASNDGIWDWDLRTDAVYFSPRYLEILGLAPDALSPTVTEWNQRIHPDDVEAVLRE 538 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSA 313 T E S + + + ++ + Sbjct: 539 NRRCATGETDSFVVEYRMRHADGSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDET 598 Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E ++ + P+ V + N + + Y+ I G +L Sbjct: 599 ALRESQDQLAKIFRLSPVGLCVSAQRDSRVVDINENGARMFGYEKAAVI----GRESLHL 654 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + V + + + L + N + + +A + Sbjct: 655 GVWPHPEDRRALVDELVAKGSIVGKELEL--LHQNGSTVVVLYSAVPIQAYGETCLLSVL 712 Query: 432 GIEPEDVDTRINKRKM 447 + + + +R + Sbjct: 713 V---DITERKAIERSL 725 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 76/267 (28%), Gaps = 37/267 (13%) Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA--RLHTIQWNRENSLAMTFIP 417 ++ L+ +L + KL L R A L I + Sbjct: 239 LDGEFRLAFILYSGKLHTAVRKGNAALLRFVEAGFDGIAAKDLKAIDKK-WRGTPLFPSS 297 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--------------CSILEATSD 463 + + +R + + +L ++E + Sbjct: 298 GLRYALLAVAALAAAALVLLSINALLRRTVRRQTARLEELLEAVGQSERRYRELVENAAC 357 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDL 521 I ++ G ++ N ++FG P+E +L + + S + +L+ Sbjct: 358 LIVRLDLLGRVVFCNAWGQRVFGLPLERMLGRDIDALGGAPGSDASESWGAILAVLAEAP 417 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577 + + + + + L + ++I++ KQ + L Sbjct: 418 DGARTLDRRHIGENGRAIWITWSVIALRDPKGLPTEFLCVGNEITQRKQAEKAL------ 471 Query: 578 AEKESSHKSDFLARVSH------EIRT 598 S + + R S+ ++RT Sbjct: 472 --AASEARYALVVRASNDGIWDWDLRT 496 >gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126] Length = 773 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 115/508 (22%), Positives = 206/508 (40%), Gaps = 22/508 (4%) Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + L + +DK I + +G + AN L+ + + I D +S+ Sbjct: 3 AQLLQRQAMDKHGIVATMDVNGKILSANDKCSQLSGFSIDEIIGENISA---FDITNMSE 59 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + S ++ E + P I + Sbjct: 60 QEKSD-IFVSLSQGQTWQGEVH--SLTKLGEPWY-VFATLVPVIKSPPRVDHLIAIATDI 115 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + ++ SI ++ +G+ +N EG N A S+L G+ ++++ + F Sbjct: 116 SEQKRLETRLSEGRAFYRSITDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRF 175 Query: 498 TVFLEQNTPSVMNHYLTE----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--- 550 + + + + + K +L + I+ L Sbjct: 176 HDTVHYQKGDGTLLPREQCPVNLTIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEG 235 Query: 551 -SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + +DIS K + KL A A+ + KSDFLA +SHEIRTP+ AIIG + + Sbjct: 236 KPDGHVGVFNDISGQKAIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHL 295 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 N + +Y + RS +LD++N +LD SK+E+ K+ + EP +L + + Sbjct: 296 ALE----STDNEQRQQYLEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTID 351 Query: 670 EAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + Q+ A +K++ + + + D + Q+ LN+LSNAI FT SG II++ Sbjct: 352 KLAQVFQVKAQQKQLQLLFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASG-HIILT 410 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N ++ V DTG+G++ + K K F Q S GTGLGL + K +V+ Sbjct: 411 VEKREN-QLAFSVSDTGMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLVELM 469 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S KG+ P+ P Sbjct: 470 GGDLTLESEVDKGSCFSFALPVCSDEGP 497 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 44/150 (29%), Gaps = 11/150 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKR 139 + ++ G + ++ + +G ++ G R D D + ++ Sbjct: 143 VYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPREQCPVNLTIRS 202 Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 ++ + G PI + A+P+ + + G G+ + + Sbjct: 203 GQSYTSYEDFFTDKRGRLF--PISIVAVPLLDKEGKPDGH--VGVFNDISGQKAIEQKLQ 258 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + ++ K + + Sbjct: 259 KAYDEAQSANKAKSDFLATMSHEIRTPMNA 288 Score = 45.8 bits (107), Expect = 0.034, Method: Composition-based stats. Identities = 37/382 (9%), Positives = 95/382 (24%), Gaps = 41/382 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 +D +G + +++ + G ++IG + + + I L + TW G+ Sbjct: 20 MDVNGKILSANDKCSQLSGFSIDEIIGENISAFDITNMSEQEKSDIFVSLSQGQTWQGEV 79 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G YV L +P+ I + + Sbjct: 80 HSLTKLGEPWYVFATL--VPVIKSPPRVDHL--IAIATDISEQKRLETRLSEGRAFYRSI 135 Query: 208 HEI----------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + + + + R + + + Sbjct: 136 TDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPREQCP 195 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S +S ++ F + L + + ++ N S ++ Sbjct: 196 VNLTIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEGKPDGHVGVFNDISGQKAIEQ 255 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + AN + S + + L S Sbjct: 256 KLQKA---------------YDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALEST 300 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 +N + L + R+ A +++I + E + + + Sbjct: 301 DNEQRQQYLEKVQRSSTALLDLMNSI-----------LDFSKVEADKIEIVDEPFTLTKT 349 Query: 438 VDTRINKRKMEIEVMQLCSILE 459 +D +++ + QL + + Sbjct: 350 IDKLAQVFQVKAQQKQLQLLFD 371 >gi|168705337|ref|ZP_02737614.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1013 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 117/755 (15%), Positives = 240/755 (31%), Gaps = 63/755 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQNTW- 143 D G + ++ G + G L V DI++ D + L Sbjct: 147 TDPEGRVVFLNATAQALTGWTQPEATGRPLEHVFDIVNADTRQPVANPARRALAEGTVVG 206 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 T L +GT PID +A PI + G + ++ Sbjct: 207 LANHTVLLARDGT--ERPIDDSAAPIRTVAGAIGGA--VLVFRDVTERYAAEEQLRQERA 262 Query: 203 KFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKT 256 L + + S ++ R ++ + + + Sbjct: 263 LLRTLIDALPDAVWTKDAGGRFVVSNRAHDEMARAVHESGAVGKTVFDLHPPELARQYED 322 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + +L E+ ++E + L++ + + + + Sbjct: 323 DDLRVLRQGETVFNKEERVRHPRGGERWHLTTKAPLRDRAGNVTGLVGVSRNIQARKEAE 382 Query: 317 EGENLTPETVDKC----PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E + + + N + L Y + + + + Sbjct: 383 EALRASEAIFRGAFEDTNLAMGIADLEHRFIRVNAALARLLGYTREELLARSVFD---VV 439 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P D + + L I ++ + +T + + Sbjct: 440 HPDDRDESRARREWLR---GGAIHFVQEKRYVRRDGRVLWCVTNVSL-VRDADGRPQLYV 495 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + + + ++ + + + T+ + + + L N A ++FGY ED Sbjct: 496 GQMQDVTAQKQAESELRASEGRFQAFFDTTTVAMVETSPDAHYLRGNAAFFRMFGYAPED 555 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + L ++ K+ +L ++ + Sbjct: 556 LPALTIADVLFPEDREAALAQYARTARGEVPS-YAADRRYRRKDGSVLWGQVSVVAARDE 614 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ + + A+K+ V+H+ LT I G+ Sbjct: 615 KGTPNLVTAVIVDMTERKKLEEQFQQAQKM-----EAVGRLAGGVAHDFNNLLTIINGYG 669 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ Q + + +G + LL S+ K + + + L+E Sbjct: 670 QILLEQLTIGGP---ARDMVQQMTAAGERAAGLTAQLLAFSR----KAIVAPKVIDLNEV 722 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V++A SL++ + I++ T+ AN++ R+ AD V+Q+ LN+ NA P GG++ I Sbjct: 723 VTQAASLLRRLI-GEDIILTTALANDLSRVTADPTQVEQVLLNLAVNAKDAMPRGGRLTI 781 Query: 728 STT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 T + V L V DTGVGMT + +PF G+GT Sbjct: 782 ETRNVRLNREMPAWPDCPPGDYVQLAVSDTGVGMTEEVKARLFEPFFTTK----EVGKGT 837 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + V + G+ ++S GT +I+ P Sbjct: 838 GLGLAVVHGAVKQSGGRVDVYSELGVGTTFKILLP 872 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 47/412 (11%), Positives = 117/412 (28%), Gaps = 24/412 (5%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 R+ + R + + L I G + + E +F + ++ Sbjct: 116 DLRLRAAEQVAHDRAELLRATLASIGDGVITTDPEGRVVFLNATAQALTGWTQPEATGRP 175 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 D V + P+ +L E N + ++S ++ Sbjct: 176 LEHVFDIVNADTRQPVANPARRALAEGTVVGLANHTVLLARDGTERPIDDSAAPIRTVAG 235 Query: 306 R------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352 + + L +D P + G +N + + Sbjct: 236 AIGGAVLVFRDVTERYAAEEQLRQERALLRTLIDALPDAVWTKDAGGRFVVSNRAHDEM- 294 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++V + G L P+L+ + + R T R ++ R Sbjct: 295 -ARAVHESGAVGKTVFDLHPPELARQYEDDDLRVLRQGETVFNKEER---VRHPRGGERW 350 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 ++ G+ + + + E T+ + I + E Sbjct: 351 HLTTKAPLRDRAGNVTGLVGVSRNIQARKEAEEALRASEAIFRGAFEDTNLAMGIADLEH 410 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + N A+++L GY E++L + + + + + + Sbjct: 411 RFIRVNAALARLLGYTREELLARSVFDVVHPDDRDESRARREWLRGGAIHFV--QEKRYV 468 Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 ++ ++L + + + Y M D++ KQ +++L ++ + Sbjct: 469 RRDGRVLWCVTNVSLVRDADGRPQLYVGQMQDVTAQKQAESELRASEGRFQA 520 Score = 113 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 30/384 (7%), Positives = 97/384 (25%), Gaps = 23/384 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDP--NNHIGDLLKRQNT 142 W DA G + + +G + D+ ++ + L + + Sbjct: 275 VWTKDAGGRFVVSNRAHDEMARAVHESGAVGKTVFDLHPPELARQYEDDDLRVLRQGETV 334 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + + G + P+ R +G G+ + + + + Sbjct: 335 FNKEERVRHPRGGERWHLTT--KAPLRDRAGNVTGL--VGVSRNIQARKEAEEALRASEA 390 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLK-TEK 258 F E + ++ + + ++ H DD + + Sbjct: 391 IFRGAFEDTNLAMGIADLEHRFIRVNAALARLLGYTREELLARSVFDVVHPDDRDESRAR 450 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L +++ + + +++ Y+ + + Sbjct: 451 REWLRGGAIHFVQEKRYVRRDGRVLWCVTNVSLVRDADGRPQLYVGQMQDVTAQKQAESE 510 Query: 319 EN----LTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 D + S N +F + Y +D+ L Sbjct: 511 LRASEGRFQAFFDTTTVAMVETSPDAHYLRGNAAFFRMFGYAP-EDLPALTIADVLF--- 566 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ R+ R + + A + + L ++ + Sbjct: 567 --PEDREAALAQYARTARGEVPSYAADRRYRRKDGSVLWGQVSVVAARDEKGTPNLVTAV 624 Query: 434 EPEDVDTRINKRKMEIEVMQLCSI 457 + + + + + + + ++ ++ Sbjct: 625 IVDMTERKKLEEQFQ-QAQKMEAV 647 Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 15/227 (6%) Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS--------LAMTFIPFEKANQFPENMP 429 + +++ R A L ++ E + LA+ + Sbjct: 49 SRTAGGLVVRRLLPLVFVALFTLGAVRLAGERAGYYDTAFGLALMVVSGGTVFAVMVLWT 108 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 D+ R ++ L + L + DG+ + EG ++ N L G+ Sbjct: 109 GWAAHALDLRLRAAEQVAHDRAELLRATLASIGDGVITTDPEGRVVFLNATAQALTGWTQ 168 Query: 490 EDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + +P + +T + + L+ L T+ ++ + Sbjct: 169 PEATGRPLEHVFDIVNADTRQPVANPARRALAEGTVVGLANHTVLLARDGTERPIDDSAA 228 Query: 547 KLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + L D++E + +L + + D + Sbjct: 229 PIRTVAGAIGGAVLVFRDVTERYAAEEQLRQERALLRTLIDALPDAV 275 >gi|254504351|ref|ZP_05116502.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11] gi|222440422|gb|EEE47101.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11] Length = 1190 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 117/649 (18%), Positives = 240/649 (36%), Gaps = 35/649 (5%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245 + + + + + E D+ S ++ +S Sbjct: 281 ALEAAIIRAETGEAQVNAVLETMLDGVVTLSPSGDLLSANPAALQMFGVQSFEDLSGKRI 340 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESF 300 D+ + + + + L + + + Y + ++++ Sbjct: 341 CDIFPDEDAHVLPFACCSGKSAPLETDKNRFEVTGRRFDGSLYPVELSLSKTIVEGQDTY 400 Query: 301 EYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357 + + +A + E + ++ P F +Y L N + S Sbjct: 401 TAILRDLTEQKAAAAKLQQVETRLVDAIESLPDGFVLYDAEDRLVLCNSKYKEFY-SSSA 459 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--SLAMTF 415 D I ++ A + D R+ + Sbjct: 460 DLIRPGRTFEEII------REGAQRGQYQVTGDALEDWVELRMENHRNPGAPMEQHLDDG 513 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 G + + + ++++ L +++ A+ DGI +++ G +L Sbjct: 514 RWLRVIESRTSEGGMVGFRVDITELKKREQELVSSQGLLRNVVSASFDGIIVMDGSGTVL 573 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTL--EKITLGS 532 + A ++FG+ +++ + + ++ M+ L + L L G Sbjct: 574 DFSPAAEEVFGWSAVELVGRKMSDYIIPEKYRAMHDAGLEKFLKTGEGPVLGKRIEIEGL 633 Query: 533 TKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 +E + + + I+ + + DI+E K + L AK+ AE + K+ FLA Sbjct: 634 HREGHEIIVELAIRHTRGEKGPLFLGYVRDITERKAAEEALRVAKEKAEAANEAKAQFLA 693 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ ++G ++++ P+ Y SG +L+++ND+LD SK+ Sbjct: 694 MMSHEIRTPMNGVLGILSLLRDTDLDPV----QKAYVKTARESGRSLLELINDILDFSKL 749 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709 E+G+ L P L V L A EK + I ++ ++P+++ D ++Q+ L Sbjct: 750 EAGRTELEKAPFRLKTVVKSIADLFMPIAQEKGLTIDLNYPADVPQVVSGDAGRLRQVLL 809 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N++SNA+ FT G I IS + ++ V V+DTG+G+ + + F I Sbjct: 810 NLVSNAVKFTEIGS-IDISVSLDEDDPVQPVFRFTVKDTGIGIAKDKHQTLFGDFVTIDT 868 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 S + GTGLGL ++K + G+ ++ S P G+ PL Sbjct: 869 SYTKKQGGTGLGLAISKRLSSLMDGEIHVESLPGAGSTFHFCVPLERAD 917 Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 42/413 (10%), Positives = 105/413 (25%), Gaps = 32/413 (7%) Query: 185 HVNRVDNDPRALGKRL-----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 R +D ++ F L + + G+ + + ++ Sbjct: 147 RDGREIDDFEREALAALAENPEQPFQRLEQREDGNVFRSATAVRMEGSCVACHNTHPESP 206 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKE 298 + + L +S+ I L T + + + Sbjct: 207 KTDWEIGDLRGIQEVVLPASALYGGSLTSINSLIVMLGIAFLAAATLTFVLSSQRQKALT 266 Query: 299 SFEYLSHRNHPSLSA------YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351 L+ +A + GE ++ S G+L ANP+ L + Sbjct: 267 RVHDLADAEREKNAALEAAIIRAETGEAQVNAVLETMLDGVVTLSPSGDLLSANPAALQM 326 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS- 410 +S +D+ + + + + Sbjct: 327 FGVQSFEDLSGKRICDIF-------PDEDAHVLPFACCSGKSAPLETDKNRFEVTGRRFD 379 Query: 411 -LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 I + + + K++ +L +E+ DG + + Sbjct: 380 GSLYPVELSLSKTIVEGQDTYTAILRDLTEQKAAAAKLQQVETRLVDAIESLPDGFVLYD 439 Query: 470 REGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 E ++ N + + + I + F + + + L + +E Sbjct: 440 AEDRLVLCNSKYKEFYSSSADLIRPGRTFEEIIREGAQRGQYQVTGDALEDWVELRMENH 499 Query: 529 TLGSTK------EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + + L + I+ DI+E K+ + +L ++ Sbjct: 500 RNPGAPMEQHLDDGRWLRV---IESRTSEGGMVGFRVDITELKKREQELVSSQ 549 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 6/182 (3%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAI 467 + +TF+ + + + + + + + E Q+ ++LE DG+ Sbjct: 250 AATLTFVLSSQRQKALTRVHDLADAEREKNAALEAAIIRAETGEAQVNAVLETMLDGVVT 309 Query: 468 INREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++ G +LS N A ++FG ED+ K V+ S L Sbjct: 310 LSPSGDLLSANPAALQMFGVQSFEDLSGKRICDIFPDEDAHVLPFACCSGKSAPLETDKN 369 Query: 527 K-ITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + G + L + + + K + Y+ + D++E K KL + Sbjct: 370 RFEVTGRRFDGSLYPVELSLSKTIVEGQDTYTAILRDLTEQKAAAAKLQQVETRLVDAIE 429 Query: 584 HK 585 Sbjct: 430 SL 431 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 36/434 (8%), Positives = 111/434 (25%), Gaps = 34/434 (7%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 +++ K HD + + E+ ++ V + + + G Sbjct: 257 LSSQRQKALTRVHDLADAEREKNAALEAA--IIRAETGEAQVNAVLETMLDGVVTLSPSG 314 Query: 94 YLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTWYGKT 147 L + + G + G R+CD+ L+ + + Sbjct: 315 DLLSANPAALQMFGVQSFEDLSGKRICDIFPDEDAHVLPFACCSGKSAPLET-DKNRFEV 373 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 T +G+ V + L+ + ++ I+ A ++++ + Sbjct: 374 TGRRFDGSLYPVELSLSKTIVEGQD------TYTAILRDLTEQKAAAAKLQQVETRLVDA 427 Query: 208 HEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 E + + + S +R + A + T Sbjct: 428 IESLPDGFVLYDAEDRLVLCNSKYKEFYSSSADLIRPGRTFEEIIREGAQRGQYQVTGDA 487 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L E + Q+ + + + + R + ++ Sbjct: 488 --LEDWVELRMENHRNPGAPMEQHLDDGRWLRVIESRTSEGGMVGFRVDITELKKREQEL 545 Query: 320 NLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + + G + +P+ + + +V+ + ++ Sbjct: 546 VSSQGLLRNVVSASFDGIIVMDGSGTVLDFSPAAEEVFGWSAVE-LVGRKMSDYIIPEKY 604 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + ++A L + + + + + I + + P G Sbjct: 605 RAMHDAGLEKFLKTGEGPVLGKRIEIEGLHREGHEIIVELAIRHTRGEKGP---LFLGYV 661 Query: 435 PEDVDTRINKRKME 448 + + + + + Sbjct: 662 RDITERKAAEEALR 675 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 63/248 (25%), Gaps = 13/248 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQ-NTWYG 145 +D G + + S + G A +++G ++ D + + LK G Sbjct: 566 MDGSGTVLDFSPAAEEVFGWSAVELVGRKMSDYIIPEKYRAMHDAGLEKFLKTGEGPVLG 625 Query: 146 KTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 K EG + ++LA G V + + Sbjct: 626 KRIEIEGLHREGH--EIIVELAIRHTRGEKGPL----FLGYVRDITERKAAEEALRVAKE 679 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 K +E K ++ + +++ + K L Sbjct: 680 KAEAANEAKAQFLAMMSHEIRTPMNGVLGILSLLRDTDLDPVQKAYVKTARESGRSLLEL 739 Query: 263 TSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 ++ + E + + K ++ + + + A + + Sbjct: 740 INDILDFSKLEAGRTELEKAPFRLKTVVKSIADLFMPIAQEKGLTIDLNYPADVPQVVSG 799 Query: 322 TPETVDKC 329 + + Sbjct: 800 DAGRLRQV 807 >gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator [Campylobacterales bacterium GD 1] Length = 1175 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 123/495 (24%), Positives = 225/495 (45%), Gaps = 20/495 (4%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 +D+ I + G + Y N F +++++ + I G + + ++ K + Sbjct: 294 LDEHAIVSITDAKGKILYINDKFCEISQFQRGELI----GKNHRVIKSNEHPDSLFKEMW 349 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 S + + + + + + + I + + + Sbjct: 350 ETISSGSVWHGEIKN---RKKDGSFYWVKSTIVPFVDDSGKPFQYISIRTDTTKQKELEE 406 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + + L SI + ++G+ +I+ G ++ +N++ S L +++L F + Sbjct: 407 RFQDQANFLNSITDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDELLDSNFYSDVLVEN 466 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISE 563 ++ ++ L TK K + + + + + DIS+ Sbjct: 467 ENITLSKFDSLMK-KSGVLHSDDVLFKTKNGKNIDIEMSAVSVLRHNKKSLIVVFKDISD 525 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K ++ L AK IAE+ S KS+FLA +SHE+RTPL IIG S + NQ +PR Sbjct: 526 RKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMSYIALNQD----TDPRI 581 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y + I SGN++L I+ND+LD SKIE+GK+++ +LD+ + + + L A EK Sbjct: 582 KNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDMLKKLSDFIHLKAYEKD 641 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVI 738 + + N P ++ D + QI LN+LSN+I FT G +I IS ++ +++ Sbjct: 642 LELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFTDHG-EIEISVEALILDAADSKLV 700 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RDTGVGMT EL++ F Q ++ R GTGLGL + K +++ G + S Sbjct: 701 FTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITKQLIELMDGNISVESEK 760 Query: 799 AKGTLIEIIFPLYDT 813 GT ++ PL+ + Sbjct: 761 GVGTTFKVELPLHTS 775 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 6/155 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 DA G + I+++ + ++IG + H D + + + + W+G+ Sbjct: 303 TDAKGKILYINDKFCEISQFQRGELIGKNHRVIKSNEHPDSLFKEMWETISSGSVWHGEI 362 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ + +P + + F+ I + + + + Sbjct: 363 KNRKKDGSFY--WVKSTIVPFVDDSGKP--FQYISIRTDTTKQKELEERFQDQANFLNSI 418 Query: 208 HE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 + I +G ++ I+S +S L ++ Sbjct: 419 TDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDEL 453 >gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 572 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 123/511 (24%), Positives = 226/511 (44%), Gaps = 17/511 (3%) Query: 307 NHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 EGE + + + V +GN+ N L Y+ + + Sbjct: 56 QRKRTEKAIHEGEEIYRSMFKNAANLILLVEKNGNIVDCNSRVGELLGYRRFELLGQP-- 113 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + L+ L + + + ++ + + + + ++ Sbjct: 114 IRNLIFPDCLEKIKKSSE----EVENRGFSFNKEYRMVRKDGKT-VDVNVNSSGLKDENG 168 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKL 484 ++ I + + + ++ ++ + S+ + + +++ + G IL N A Sbjct: 169 FHVQTIYIVEDITERKKAEKLVKENESRYRSLFQNNRAVMLLLDPDTGNILDANSAACAF 228 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLR 542 +GYP E +L ++ E+ R + + Sbjct: 229 YGYPREKMLGLNIADINILPKEQILE----ELEQEKSRDINHFYFTHRLSNGVLRDVERY 284 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + DI++ ++ +++L AK AE S KS+FLA +SHE+RTPL + Sbjct: 285 SYPILMGGKKLLYAIVSDITDNRKMQSELVRAKMEAEIASKAKSEFLASMSHELRTPLNS 344 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ Q FGPL N + + Y N I SGN +L ++N +LD+SK+E+GKM L E Sbjct: 345 IIGFSDMLLTQNFGPL-NKKQLRYVNNISVSGNHLLKLINGILDLSKVEAGKMELKVEEF 403 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 S+ +++SE L+ A++K I I + + I AD KQI N++ NAI FT Sbjct: 404 SVLDSISEVKVLLTPLASKKDIQILSVVDKELTTIRADRTKFKQILYNLVDNAIKFTHED 463 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G +I+ ++ + V+DTG+G++ ++K +PF Q+ NS+ + +GTGLGL L K Sbjct: 464 GFVIVDARVE-GDQAKIMVKDTGIGISKAGVKKIFQPFTQLENSEYGKQKGTGLGLSLVK 522 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 V+ + GK ++ S +G+ PL T Sbjct: 523 KFVEMHTGKIWVESEFGEGSKFIFTIPLSLT 553 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 50/141 (35%), Gaps = 5/141 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150 +G + + + + + +G F+++G + ++ ++ + ++ + ++ + + Sbjct: 88 NGNIVDCNSRVGELLGYRRFELLGQPIRNLIFPDCLEKIKKSSEEVENRGFSFNKEYRMV 147 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G + V ++ + L ++ + IV L K + ++ L + Sbjct: 148 RKDGKTVDVNVNSSGL----KDENGFHVQTIYIVEDITERKKAEKLVKENESRYRSLFQN 203 Query: 211 KKGHSSVEKEKYDIFSQQSPP 231 + + + Sbjct: 204 NRAVMLLLDPDTGNILDANSA 224 >gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1303 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 112/520 (21%), Positives = 216/520 (41%), Gaps = 19/520 (3%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + +L R + + +D+ I + GN+ Y N F L++ Y Sbjct: 281 VVWSFLRQRRNGLSLEAAIKQLAFQKFAMDQHAIVSIADATGNITYVNEKFCLVSGYAES 340 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + G + + + + + + + + Sbjct: 341 ELL----GNNHRVLSSGHHGATFFQEMWHTIEQGNVWHGELKNRAKE---GGFFWVASTI 393 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + I + + + + E + + L I +A +G+ ++REG + Sbjct: 394 VPFLDSQGKPYQYISIRTDITQRKRVEEQHEKQKIFLQGITDAMGEGLFAVDREGACIFI 453 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKEE 536 N+ ++ G+ E+I K + +T + + S+D + Sbjct: 454 NKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQWPALRSMDEAAPARSEDEHFINRSG 513 Query: 537 KLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 ++ + ++ L + DIS KQ++ L A + A++ + KSDFLA +S Sbjct: 514 QMFPVSMVAVPLEEGERIVGSVVVFQDISVRKQQEQVLQGAVRAADQANRAKSDFLANMS 573 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ AI+G S + +PR Y I + +L I+ND+LD +K+E+G Sbjct: 574 HEIRTPMNAILGMSHLAIRTS----NDPRQRAYLQKIHGAAQSLLHIINDILDFAKVEAG 629 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 KM + P +LDE + +L + A+EK + + ++P+ ++ D + QI LN+ Sbjct: 630 KMEMEMVPFNLDEVLDTLATLTSVKADEKGLALIFRRHLDLPQRVVGDALRLNQILLNLT 689 Query: 713 SNAIHFTPSGGQII-ISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G ++ + +++ V+DTG+GM ++++ F Q +S Sbjct: 690 GNAVKFTEQGSVVVNVEKVQQQGDQIVLRFSVQDTGIGMDESQIQQLFVAFEQADSSITR 749 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R G GLGL + K +V+ G+ + STP G+ P Sbjct: 750 RYGGRGLGLAICKQLVNLMAGELSVQSTPEVGSCFTFTVP 789 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 69/251 (27%), Gaps = 13/251 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148 DA G + ++E+ G +++G +S + +++ N W+G+ Sbjct: 319 DATGNITYVNEKFCLVSGYAESELLGNNHRVLSSGHHGATFFQEMWHTIEQGNVWHGELK 378 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 EG + + +P + ++ I ++ + Sbjct: 379 NRAKEGG--FFWVASTIVPFLDSQGKP--YQYISIRTDITQRKRVEEQHEKQKIFLQGIT 434 Query: 209 EIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------SLTEYYAHKDDVLKTEKYPL 261 + +G +V++E IF + L + L D + Sbjct: 435 DAMGEGLFAVDREGACIFINKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQWPALRS 494 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + E E F + + L + + S+ ++ Sbjct: 495 MDEAAPARSEDEHFINRSGQMFPVSMVAVPL-EEGERIVGSVVVFQDISVRKQQEQVLQG 553 Query: 322 TPETVDKCPIP 332 D+ Sbjct: 554 AVRAADQANRA 564 Score = 41.9 bits (97), Expect = 0.49, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 42/145 (28%), Gaps = 5/145 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTW 143 + +D G I+++ + +G A ++ ++ + + + L+ + Sbjct: 441 LFAVDREGACIFINKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQWPALRSMDEAAP 500 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 I + P+ + A+P+ R G + V + + + Sbjct: 501 ARSEDEHFINRSGQMFPVSMVAVPLEEGER-IVG--SVVVFQDISVRKQQEQVLQGAVRA 557 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 558 ADQANRAKSDFLANMSHEIRTPMNA 582 >gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 960 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 105/543 (19%), Positives = 215/543 (39%), Gaps = 23/543 (4%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E+ + + + ++ N ++ L E E L T ++ P Sbjct: 294 ERRARAMLQVARNGLEETVARRTNELAQANAAL-----QKEIKEHRESEELFRMTFEQSP 348 Query: 331 -IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 V ++ AN F +T Y + + + P+ ++ L R Sbjct: 349 FAAVMVSLDYHILRANREFCRITGYSEQE-LGKLTIKD--ITHPEDLPSSIANADALRRG 405 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 D I+ + ++ + P + + G+ + + + ++ Sbjct: 406 D--FDRYQIDKRYIRKDG-TTIWVRITPQIVRDVGDRPLYSLGMAEDITERKATAEALQA 462 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + +L + D + I + +G N GY + ++ K F F+ + + Sbjct: 463 KTQELDRYFTLSLDLLCIADTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDDIAAT 522 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 T + + + + + + K P + DI+E K ++ Sbjct: 523 VEAATSLAAQTQVSKFVNRYRTKSGDYRWIEW----KSYPAGNLVYAAARDITERKDLED 578 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A AE + K +FLA +SHEIRTP++ I+G +++ + P + Sbjct: 579 ALRKAMSQAEAANQAKGEFLANMSHEIRTPMSGIMGLMDMLLDGEATPA----QRRHLEL 634 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S ++ IVND+LD SK+E+G++ + E + + E + A +K + + + Sbjct: 635 IRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKELRLTCA 694 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVG 747 +P +++D R + QI N++ NA+ FT G ++ + + +++ L V D+G G Sbjct: 695 VDEAVPANLVSDPRRLSQIMTNLVGNALKFTQQG-EVSVRLRADTTDKLLTLSVSDSGSG 753 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F Q+ +S + GTGLGL + K +V A G + S G++ + Sbjct: 754 IPKDKLTRLFQRFSQLDSSPAKKAAGTGLGLAICKGLVQALGGDIRVESELGAGSVFTVR 813 Query: 808 FPL 810 P+ Sbjct: 814 IPM 816 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 38/418 (9%), Positives = 95/418 (22%), Gaps = 28/418 (6%) Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 GF + ++ V L +R + + SP Sbjct: 83 ALGFAVANIIEVLTAA-FLLRRFAGLPFRFESQRNIALFLLCAVGLAPLVASPVGAATAT 141 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + + + ++T + + S Sbjct: 142 LGLGGAFLTNWVRFIMGDALAQLIVTPALLTWIGLVRSERTLAPARAAEFALAMALLASV 201 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 F + PI ++ + + + Sbjct: 202 SWFAFDGPSG---------ARLGGVDFLFLPLPILLWIALR----------MDVWGTSTA 242 Query: 358 DDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + +T+ P + + A L L + + AM Sbjct: 243 TALVSIMAIYFATISSGPFNTPDAAQNVFGLQVYVFCVFLPLLFLSALVEEERRARAM-L 301 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + N + + + ++ E + +++ + IL Sbjct: 302 QVARNGLEETVARRTNELAQANAALQKEIKEHRESEELFRMTFEQSPFAAVMVSLDYHIL 361 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 NR ++ GY +++ + + D + + K+ Sbjct: 362 RANREFCRITGYSEQELGKLTIKDITHPEDLPSSIANADALRRGDFDR-YQIDKRYIRKD 420 Query: 536 EKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + +RI + + DI+E K L + ++ + D L Sbjct: 421 GTTIWVRITPQIVRDVGDRPLYSLGMAEDITERKATAEALQAKTQELDRYFTLSLDLL 478 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 21/245 (8%), Positives = 63/245 (25%), Gaps = 14/245 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D GY + ++ E T+G ++ G R D I L Q Sbjct: 482 DTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDDIAATVEAATSLAAQTQVSKFVNR 541 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + + + I+ + P +G + D ++ + ++ Sbjct: 542 YRTKSGDYR-WIEWKSYP--------AGNLVYAAARDITERKDLEDALRKAMSQAEAANQ 592 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 K + + + + ++ + + + ++ Sbjct: 593 AKGEFLANMSHEIRTPMSGIMGLMDMLLDGEATPAQRRHLELIRGSARTLMSIVNDILDF 652 Query: 270 PEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + E + ++ G + +++ L+ ++ A + Sbjct: 653 SKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKELRLTCAVDEAVPANLVSDPRRLSQ 712 Query: 325 TVDKC 329 + Sbjct: 713 IMTNL 717 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 45/449 (10%), Positives = 114/449 (25%), Gaps = 56/449 (12%) Query: 32 NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 NG E +++ N + + +SE F + Sbjct: 306 NGLEETVARRTNELAQANAALQKEIKEHR--------ESEELFRMTFEQSPFAAV-MVSL 356 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTL 149 ++ + E + G ++ + + D++ + + D L+R + + Sbjct: 357 DYHILRANREFCRITGYSEQELGKLTIKDITHPEDLPSSIANADALRRGDFDRYQIDKRY 416 Query: 150 WPIEGTNLYVPID------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +GT ++V I + P+YS G+ + ++ Sbjct: 417 IRKDGTTIWVRITPQIVRDVGDRPLYS----------LGMAEDITERKATAEALQAKTQE 466 Query: 204 FSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + + + + H DD+ T + Sbjct: 467 LDRYFTLSLDLLCIADTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDDIAATVEAA 526 Query: 261 LLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + ++ + + T + + + N + + ++ Sbjct: 527 TSLAAQTQVSKFVNRYRTKSGDYRWIEWKSYPAGNLV------YAAARDITERKDLEDAL 580 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + G AN S + T GL +L + + Sbjct: 581 RKAMSQAEAANQA-----KGEFL-ANMSHEIRTPMS------GIMGLMDMLLDGEATPAQ 628 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 ++ S RT ++ + L + F E + E + Sbjct: 629 RRHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKE 688 Query: 440 TRIN-------KRKMEIEVMQLCSILEAT 461 R+ + + +L I+ Sbjct: 689 LRLTCAVDEAVPANLVSDPRRLSQIMTNL 717 >gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1026 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 220/561 (39%), Gaps = 42/561 (7%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPF-F 334 + + +Q + N + + E E + + + Sbjct: 324 GLVMGLMLVRQKIVFDERNQLLTTTLTEIEERKRVEKSLRESEQEKAAILGGLKNVAVEY 383 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + L + N + + + + + + R+ Sbjct: 384 LDPFMRLIWINDNLQESIGLSADEMLG------ARCYEAVFGRSEPCSGCTVARAINMGA 437 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + L I + + + + + + + +R ++ +L Sbjct: 438 SQEGDL--ITPDGRT---WISRSSPLKDADGKIIGVVHVLIDISARKSAERALKESERRL 492 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNH 511 I+E D ++++ G ++S NRA+ K+ G E IL K +++ + Sbjct: 493 ADIIEFLPDATFVVDKNGKVISWNRAIEKITGVKAELILGKGDYEYSLPFYGERRPTLID 552 Query: 512 Y---------------LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 + + L + + L L S+ Sbjct: 553 MAKGIDPKIDPEFEKKYENLKRDEENNLLVGEAYMPLQGKGDAYLLGSASALYDSNGDYW 612 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ DI++ K+ + +L +K++AE + KS+FLA +SHEIRTP+ A+IG +E++ + Sbjct: 613 GAIESIRDITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMD 672 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 ++ L + E I SG+ +L I+N++LD++KIE+ L P+ + + ++ Sbjct: 673 EKDEKLTSA-QRECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSM 731 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730 LV +KRI N+P+ I+ D + QI +N+L+NA+ FT G +I +S + Sbjct: 732 DLVSGSVGDKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQG-EIAVSVSN 790 Query: 731 --HTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E+ V+DTG+G+ ++ + + F Q+ S + GTGLGL ++K + + Sbjct: 791 TNLDDGGYEIHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEM 850 Query: 788 NMGKFYIFSTPAKGTLIEIIF 808 G+ ++ S G++ Sbjct: 851 MNGRMWVESAVGVGSVFHFTI 871 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 9/143 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D L I++ L ++IG A +M+G V + + + G Sbjct: 384 LDPFMRLIWINDNLQESIGLSADEMLGARCYEAVFGRSEPCSGCTVARAINMGASQEGDL 443 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + I + P+ + + G I K +++ + + Sbjct: 444 IT-----PDGRTWISRS-SPLKDADGKIIGVVHVLI--DISARKSAERALKESERRLADI 495 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP 230 E + V + + S Sbjct: 496 IEFLPDATFVVDKNGKVISWNRA 518 Score = 46.6 bits (109), Expect = 0.020, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 44/163 (26%), Gaps = 23/163 (14%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----------------ID 128 T+ +D +G + + + K G A ++G + S + ID Sbjct: 503 TFVVDKNGKVISWNRAIEKITGVKAELILGKGDYEYSLPFYGERRPTLIDMAKGIDPKID 562 Query: 129 PNNHIGDLLKRQNTWYGKTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 P +++ P++G + +A +Y N ++ G + Sbjct: 563 PEFEKKYENLKRDEENNLLVGEAYMPLQGKGD-AYLLGSASALYDSNGDYWGA--IESIR 619 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 +R + K + + Sbjct: 620 DITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNA 662 >gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1039 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 126/763 (16%), Positives = 259/763 (33%), Gaps = 65/763 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148 G + E ++ + +G ++ G R D+ +I+ NN I +L + + Sbjct: 144 DGAIAEANDAFLRMVGYSQEDLLAGRVRWRDMIPPKYIEANNSAIAELKAKGVCQPFENE 203 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + VPI L + + + + + F V + ++++ Sbjct: 204 YIRKD--QNCVPILLGSALLENNSNDIISF-----VLDLSERKQVELALCQSEERYRAFL 256 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + + I ++ V + ++ + Sbjct: 257 EQSSEGIWCIELEVPISPDCPEDEQIQHFYQYVYLAECNNVMAQMYGCSRAEEIINARLG 316 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNS--------------------------KESFE 301 D H I + + + + S + Sbjct: 317 DFLIPSDPHNIAYLRNFIRSNYRLIDAESHEIDKQGNSKYFLNNLVGIVENGLLVRAWGT 376 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDI 360 A ++ E + P+ +V + N + + + Sbjct: 377 QRDITERKQAEAALNQQEEQLRLITNAVPVQISYVDIQQLYRFNNKGYEDWFGLPASEIY 436 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + + S +I P + + +L + + Sbjct: 437 GK-----HIREIMGESVYQSILPYVEAVLSGEEVTYETQL---PHKDGTHHYINVSYVPQ 488 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNR 479 ++ + + + ++ + ++ +L ++ E +N G Sbjct: 489 FSEQGKVEGFVALITDITLHKLAEAALKQSEKRLKTLTEKVRIIPWEVNATTGNFTYVGP 548 Query: 480 AVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++ GYP+ D F + Y E S E + ++ Sbjct: 549 QTVEILGYPLSDWYIDDFWQKHMHPEDREWAIQYCQE--SSLSLNNYEFEYRMLAADGRV 606 Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588 + L II + + M DI++ KQ + + A+ AE + K +F Sbjct: 607 VWLYDIINVVRDENGPQLLHGFMLDITDRKQAEQEREQLLEREKAARADAESANRMKDEF 666 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTPL AI+G++++++N++F R I+R+ + ++ D+LD+S Sbjct: 667 LATLSHELRTPLNAILGWTQLLRNRKFDEATTARA---LETIERNTKSLAQLIEDVLDVS 723 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 +I G ++L + L V AI V+ A K I I+ F + ++ D ++Q+ Sbjct: 724 RIIRGTLHLSIHRIKLVPLVEAAIDTVRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVV 783 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA+ FT GG + + + V +RV DTGVG+ L + F Q +S Sbjct: 784 WNLLSNAVKFTSKGGSVDVQLERIES-SVQIRVSDTGVGIAAEFLPHVFERFRQADSSST 842 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 G GLGL + + +V+ + G + S +G + P+ Sbjct: 843 RSHGGLGLGLAIVRHLVELHGGTVSVESLGVGQGATFIVNLPM 885 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 48/423 (11%), Positives = 109/423 (25%), Gaps = 43/423 (10%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 K + KF L E V I + L D Sbjct: 116 SLQKLKVSEAKFRRLVESNIIGIIVANMDGAIAEANDA-FLRMVGYSQEDLLAGRVRWRD 174 Query: 253 -------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLS 304 L ++ P + ++ + N L+NNS + L Sbjct: 175 MIPPKYIEANNSAIAELKAKGVCQPFENEYIRKDQNCVPILLGSALLENNSNDIISFVLD 234 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-----------------VYSHGNLFY---A 344 + + E +++ + + Y Sbjct: 235 LSERKQVELALCQSEERYRAFLEQSSEGIWCIELEVPISPDCPEDEQIQHFYQYVYLAEC 294 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N + ++I A L+ + + + A H I Sbjct: 295 NNVMAQMYGCSRAEEIINARLGDFLIPSDPHNIAYLRNFIRSNYRL-----IDAESHEID 349 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + + G + + + + + + + QL I A Sbjct: 350 KQGNSKYFLNN--LVGIVENGLLVRAWGTQRDITERKQAEAALNQQEEQLRLITNAVPVQ 407 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I+ ++ + + N+ FG P +I K + ++ + Y+ +LS + Sbjct: 408 ISYVDIQQLYRFNNKGYEDWFGLPASEIYGKHIREIMGESVYQSILPYVEAVLSGEE--- 464 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + T K+ + + + + DI+ K + L ++K + Sbjct: 465 VTYETQLPHKDGTHHYINVSYVPQFSEQGKVEGFVALITDITLHKLAEAALKQSEKRLKT 524 Query: 581 ESS 583 + Sbjct: 525 LTE 527 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 5/146 (3%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLE 502 +K+++ + ++E+ GI + N +G I N A ++ GY ED+L + Sbjct: 118 QKLKVSEAKFRRLVESNIIGIIVANMDGAIAEANDAFLRMVGYSQEDLLAGRVRWRDMIP 177 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDI 561 N + E+ + + Q E + K++ + + + S+ + D+ Sbjct: 178 PKYIEANNSAIAELKAKGVCQPFENEYI--RKDQNCVPILLGSALLENNSNDIISFVLDL 235 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587 SE KQ + L +++ S+ Sbjct: 236 SERKQVELALCQSEERYRAFLEQSSE 261 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 109/533 (20%), Positives = 210/533 (39%), Gaps = 62/533 (11%) Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 V+ P + S +L + N + + L S ++ + P+ + Sbjct: 530 YHNLVEVYPEAILIVSQDDLVFVNSAAVRLLGVNSAGELLGKKFIE--FVHPQHREEIEE 587 Query: 382 --------------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + V ++D I + + + + + + Q Sbjct: 588 NLKSLKTNQRLIPLQEVKFLQADGRIIYVETVGAFLTYQNQPAAQIVARDITRRKQTELA 647 Query: 428 MPQNGIEPEDV--------------------DTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + E E + + + + I + +IL D I Sbjct: 648 LRKTKDELELRVNQRTSELINVNHQLQSQLDEQKRTQDALRISENRFEAILSIADDAIIS 707 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524 I+ I N+ K+FGY E++L K + L ++++ + R Sbjct: 708 IDNSQGITLFNQGAEKIFGYTAEEVLGKKLDLLLPTRFAQEHRNHVSTFGKSSAHARRMG 767 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + G K+ I KL S Y++ + DI+E KQ + Sbjct: 768 ERQEIFGCRKDGSEFPAEASISKLDLGPESVYTVILRDITERKQVE-------------- 813 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +F++ VSHE+RTPLT+I G ++ + + + S ++ ++N Sbjct: 814 KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLST-TSEQGKRLLQIATDSTERLVRLIN 872 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI----- 697 D+LDI +IESGK+ + E L + ++ AI+++Q A++ + + +N+ Sbjct: 873 DILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSIQNSNSSSNSSSIQL 932 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD + Q N+ SNAI F+ G + + T + +V++ V+DTG G+ +LE Sbjct: 933 WADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKD-QVLVTVQDTGRGIPEDKLESIF 991 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ +S +GTGLGL + K++V + GK ++ S +G+ P+ Sbjct: 992 ERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQGSSFYFTLPI 1044 >gi|298489942|ref|YP_003720119.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298231860|gb|ADI62996.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 1138 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 122/772 (15%), Positives = 262/772 (33%), Gaps = 37/772 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + +SE F + +D G + + G A ++I Sbjct: 383 TDIHDRVTAEIALRESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAAEII 442 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G I L ++ +G+ + L AL + Sbjct: 443 GRDFACFFPPEDIANAMPKQQLEAASVNSRCESESIFVRKDGSYFWANCILTAL--HDDT 500 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 E GF + R + + K L + + G S I+ + Sbjct: 501 GELRGF-----CKLTRDITERKLTEKSLLRLQKAIESTSDGISIANISGQVIYVNPAFTE 555 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGT 291 L + K + L T S + + + Sbjct: 556 VLDYTGIQLNTCGGLVTTFRNPKVFETVLATVHRGESWHGEVTMQAQSGDYVQVDLRTDA 615 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPS 347 +++ + + +S + + +EG L + + G++ Y NP+ Sbjct: 616 IKDTTGKIVYLVSIYTDITQRRFIEEGLRLRDRAIAASSNGIIIADITIPDGSITYVNPA 675 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F +T Y + + + L ++ A++ + + L + + Sbjct: 676 FERMTGYTAAEVMRQNF---RLFLGADINQP-ALEQMKIAMQTGQ--DCKVILRNYRKDG 729 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + GI+ + + + + + +L +L A+ + Sbjct: 730 SLFWH-ELNISPVYDTEACLTHYIGIQTDITQRKQAETALLVTQQRLQYLLSASP-AVIY 787 Query: 468 INREGII---LSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLR 522 + + + + + GY ++ ++ + + S + L+++ D + Sbjct: 788 TSEAMRDYGTVFISNNIKGMVGYEAQEFVKDSGFWFSHIHPEDASDVLAELSQVQVFDKK 847 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 Q + + K + + DI+ KQ + +L A + Sbjct: 848 Q-YSLEYRFLHADGTYRWIYDQGKVVWDKAGNPLELVGYWADITSRKQLEQELRTALEKE 906 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ + KS F++ SHE RTPL+ I+ +E + + + + I + + + Sbjct: 907 KELNELKSRFISMTSHEFRTPLSTILSSAE-LLEHYHQRWTEEKLLIHLRRIQTAVHRMT 965 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++++D+L I K E+GK+ L E + + V+L + ++ TS +I Sbjct: 966 EMLDDILVIGKAEAGKLEYKPLFFDLVEYCRQLVEEVRLNLKSQHLIFFTSQCKSI-SCY 1024 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + + I N+LSNA+ ++P G + + NE+ +L+++D G+G+ + + Sbjct: 1025 MDDKLLGYILSNLLSNALKYSPDGSLVRFTLACK-NEQAVLKIQDQGIGIPEENQPRLFE 1083 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + N GTGLGL + K VD + G+ Y S GT + P+ Sbjct: 1084 SFYRANNVGN--ILGTGLGLAIVKKCVDIHNGEIYFTSQLGIGTQFTVKLPV 1133 Score = 190 bits (482), Expect = 1e-45, Method: Composition-based stats. Identities = 73/546 (13%), Positives = 165/546 (30%), Gaps = 34/546 (6%) Query: 55 TDQNQESVSNTNYL--DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 T Q+ T SE F F + W DA G L +++ + G+ + Sbjct: 254 TVQDVTQRKETQEALEKSEEWFRFLAESIPQQ-VWIADADGNLVYMNQRVLDGFGSTRER 312 Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++G + + ++ + Y + + Y AL + R Sbjct: 313 VLGGKWTQWVHPDDLPNVVNVWNQSLATGINYEVEFRLFQKPSGTYHWHMGRALALRDRQ 372 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPP 231 + FG + ++ F L E K ++ + + + S S Sbjct: 373 GKIV--NWFGTNTDIHDRVTAEIALRESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGA 430 Query: 232 ---PHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKK 286 + + + +D+ S S + F + + + Sbjct: 431 ECMTGYQAAEIIGRDFACFFPPEDIANAMPKQQLEAASVNSRCESESIFVRKDGSYFWAN 490 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345 L +++ E + + ++ + ++ + + G + Y N Sbjct: 491 CILTALHDDTGELRGFCKLTRDITERKLTEKSLLRLQKAIESTSDGISIANISGQVIYVN 550 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P+F + Y + + GGL T PK+ + + Sbjct: 551 PAFTEVLDYTGIQ-LNTCGGLVTTFRNPKVFETVLATVHR-----GESWHGEVTMQAQSG 604 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + + + + I + R + + + + A+S+GI Sbjct: 605 D---YVQVDLRTDAIKDTTGKIVYLVSIYTDITQRRFIEEGLRLRDR----AIAASSNGI 657 Query: 466 AIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 I + +G I N A ++ GY +++R+ F +FL + + + Sbjct: 658 IIADITIPDGSITYVNPAFERMTGYTAAEVMRQNFRLFLGADINQPALEQMKIAMQTGQD 717 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIA 578 + I K+ L + I + + Y DI++ KQ + L ++ Sbjct: 718 CKV--ILRNYRKDGSLFWHELNISPVYDTEACLTHYIGIQTDITQRKQAETALLVTQQRL 775 Query: 579 EKESSH 584 + S Sbjct: 776 QYLLSA 781 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 49/513 (9%), Positives = 144/513 (28%), Gaps = 35/513 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D H + K +G ++G D ++ + L N Sbjct: 162 WK-DIHSVFLGCNRNFAKMVGFENPEDIVGKT--DFDLVVDPEQAEFYDATLMEANQPEY 218 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + ++ +P++S + G G V + + ++ ++ F Sbjct: 219 YQIIPKQQADGSQIWLETNKVPLHSIGGQVVGMLG--TVQDVTQRKETQEALEKSEEWFR 276 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L E + ++ + +V D L Sbjct: 277 FLAESIPQQVWIADADGNLVYMNQRVLDGFGSTRERVLGGKWTQWVHPDDLPNVVNVWNQ 336 Query: 264 SEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 S + + + +F + + L++ + + + Sbjct: 337 SLATGINYEVEFRLFQKPSGTYHWHMGRALALRDRQGKIVNWFGTNTDIHDRVTAEIALR 396 Query: 321 LTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E + G + N +T Y++ + I + Sbjct: 397 ESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAAEIIGR--DFACFFPPED 454 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 +++ + + + C + ++ + + I + E + Sbjct: 455 IANAMPKQQLEAASVNSRC---ESESIFVRKDG-SYFWANCILTALHDDTGELRGFCKLT 510 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + ++ ++ + +L +E+TSDGI+I N G ++ N A +++ Y + Sbjct: 511 RDITERKLTEKSLL----RLQKAIESTSDGISIANISGQVIYVNPAFTEVLDYTGIQLN- 565 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 + + + + ++ + + + + + ++ Sbjct: 566 -TCGGLVTTFRNPKVFETVLATVHRG--ESWHGEVTMQAQSGDYVQVDLRTDAIKDTTGK 622 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 DI++ + + L + S+ Sbjct: 623 IVYLVSIYTDITQRRFIEEGLRLRDRAIAASSN 655 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 32/319 (10%), Positives = 93/319 (29%), Gaps = 13/319 (4%) Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + ++ P F + L+ + + + + Sbjct: 90 AAGDALKPIVSLFSQTQTQLIAVIDEQDQMVGVITPESICLALGVVEMVENQLLQSQQML 149 Query: 323 PETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D P F ++ N +F + +++ +DI ++D + Sbjct: 150 QLIMDTIPHGIFWKDIHSVFLGCNRNFAKMVGFENPEDIVGKTDFDLVVD----PEQAEF 205 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 L +++ ++ Q + + + + + + G + + Sbjct: 206 YDATLMEANQPEY---YQIIPKQQADGSQIWLETNKVPLHSIGGQVVGMLGTVQDVTQRK 262 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + +E + E+ + I + +G ++ N+ V FG E +L +T ++ Sbjct: 263 ETQEALEKSEEWFRFLAESIPQQVWIADADGNLVYMNQRVLDGFGSTRERVLGGKWTQWV 322 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + + + + L+ + +E L + T Sbjct: 323 HPDDLPNVVNVWNQSLATGINYEVEFRLF-QKPSGTYHWHMGRALALRDRQGKIVNWFGT 381 Query: 558 MHDISEWKQEKNKLSHAKK 576 DI + + L +++ Sbjct: 382 NTDIHDRVTAEIALRESEE 400 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 16/139 (11%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTE 515 I++ GI + + L NR +K+ G+ EDI+ K + + Sbjct: 152 IMDTIPHGIFWKDIHSVFLGCNRNFAKMVGFENPEDIVGKTDFDLVVDPEQAEFYDA--T 209 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKL 571 ++ + + + I + + L L + T+ D+++ K+ + L Sbjct: 210 LMEANQPEYYQ-IIPKQQADGSQIWLETNKVPLHSIGGQVVGMLGTVQDVTQRKETQEAL 268 Query: 572 SHAKKIAEKESSHKSDFLA 590 ++S FLA Sbjct: 269 --------EKSEEWFRFLA 279 >gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1811 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 122/721 (16%), Positives = 243/721 (33%), Gaps = 39/721 (5%) Query: 117 RLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPI---EGTNLYVPIDLAALPIYSRN 172 + LH D + + + +GT Y + Y+ + Sbjct: 967 TWTQIQSYLHPEDQELARLAVENSIREHSDYDIEYRLMLSDGT--YRWVAAKGRAQYNAS 1024 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 G FG+V ++ + + + + + +P Sbjct: 1025 GNVLGM--FGVVQDISERKQAEETLRQTEARLYVALKNSPITVFNQDRELRYTWIYNPAF 1082 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + + + DV + + + +E + Y L Sbjct: 1083 NYPLDYIIGKRENELFAHSDVTQLIEIKQGVLDTGIAAREEVKIGMPDGDYYYDLTVEPL 1142 Query: 293 QNNSKESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPS 347 + + + + + E + + P+ YAN + Sbjct: 1143 YDKGSKIMGITCAAIDISERKQMELAIRKSETVLNAFLTSSPVAVAFLDQDLRYIYANEA 1202 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + I + SD + +L + + Sbjct: 1203 LAAINGVPLKEHIGRTVWE---VLPAWASDIQVVVEQVLATKQPLL---NQEVSGETNPP 1256 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + E + + + + ++ + + S++ A+S + Sbjct: 1257 GLYRYGLVNYYPVYLPDGEVLGVGITSMDISELKRTEQALRESEERYRSLVTASSQIVWR 1316 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 N +G + + + G PVE++L T + + + + T E Sbjct: 1317 ANHQGQFVDV-QGWEEFTGQPVEELLAGS-TAAIHPQDLERVRQIWYKAVKSKT--TYEV 1372 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKK 576 + I + + + +I + KQ + + A++ Sbjct: 1373 EHRIRKYDGTYEYFAIRGIPVLDAGGEVYTWVGMTTNIHQRKQAEMEREQLLEAERRARE 1432 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE+ + K +FLA +SHE+R+PL I+G++++++ + + I+R+ L Sbjct: 1433 EAERANRIKDEFLAVLSHELRSPLNPILGWTQMLQTYKLDEKAT---QQALATIERNAKL 1489 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 ++ DLLDIS+I GKM L+ PV+L + A+ V+L A K I I+T FA + Sbjct: 1490 QTQLIEDLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGE 1549 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +L D ++Q+ N+LSNA+ FTP+GGQI I + V+DTG G+ L Sbjct: 1550 VLGDSARLQQVVWNLLSNAVKFTPAGGQIEIDLELKDIN-AQISVKDTGKGINPNFLPHV 1608 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815 + F Q + + G GLGL + + + + + G + S G + PL T Sbjct: 1609 FEYFRQEDSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLPLTATPS 1668 Query: 816 P 816 P Sbjct: 1669 P 1669 Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats. Identities = 51/519 (9%), Positives = 125/519 (24%), Gaps = 33/519 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTT 148 D G ++ + ++IG+R ++ + +L T Sbjct: 549 DETGQHIYVNAWFEQL--FAGKEIIGLRDFEIYPQVAAQQFRANDLKVLDSNEVMQFLET 606 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G + YV P + G+ + D++F Sbjct: 607 LPQEDGEHYYVSFKF---PFQDSSGRKLVA---GVSMDVSDRIRAEEALRLSDERFRLAA 660 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 KG + P + + + + E L Sbjct: 661 RAVKGIVYDWDVLSGTVYRSEGLYPLMGIHPDDVPQTRDWWSERLHPDDLARIMPEMGFL 720 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--- 318 + + + L++ + + + + + Sbjct: 721 IEGRGELYEFEYRVRHEDGRWIEVWDQGYLLRDQNGGLLRVVGFTSDITERKQAEAEKQQ 780 Query: 319 --------ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + P V + G++ N + + S+ E Sbjct: 781 LLEQIKTEREFLEAVLQQMPAGVMVANAATGDIMLTNEQIKYIWRISSLLPFENIHQSER 840 Query: 369 LLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L + L+RS +T M + Sbjct: 841 LYHGFHLSGRPYQLHEWPLFRSVKTGEVVREEEIIFLRGDGTWGIMLVNSAPIRDTQGNI 900 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + D + + ++ +L L A G N + +++ + +++F Sbjct: 901 KAGVVTFYDISDRKQAEEALQESAQRLSLALSAAKMGDWSWNAKTDMVTFSERGAQIFDI 960 Query: 488 P-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P + +L + + + +E + S + ++ + + Sbjct: 961 PSGPYLTWTQIQSYLHPEDQELARLAVENSIREHSDYDIEYRLMLSDGTYRWVAAKGRAQ 1020 Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + DISE KQ + L + Sbjct: 1021 YNASGNVLGMFGVVQDISERKQAEETLRQTEARLYVALK 1059 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 49/449 (10%), Positives = 122/449 (27%), Gaps = 32/449 (7%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKY 259 + + + + + V + D P L K ++ + + Sbjct: 13 QDLAKIIDQIREGFWVLSWEGDCTYSNQPQAELMGKSKQEIIGNNIRELFPQWIGTEIEQ 72 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 ++ Q + + + F E Sbjct: 73 KFHQIITEKTASNFEYLDT-ARQRWYEYRVNPTAQ--GLAILTIDITERKRTEKTFQESI 129 Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ++ P ++ + G + Y NP++ + ++ D I + + Sbjct: 130 EQFRAFMNHSPASAWIATAEGRILYLNPTYFRMFQFPQTDVIGKT------IAEIYSEEF 183 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + T N + + + E M G+ + Sbjct: 184 AQKFLENNRQVFETQQPVETIEVAPLHNGKTGQFLVYKF--PIFGQGEEMLIGGVAIDIT 241 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + ++ Q+ +ILE+ +DG +R+ N+ +L +++L K + Sbjct: 242 ERQEFEASLKAANQQISNILESITDGFIAFDRQWRYTYLNQEACRLLEKSPQELLGKTWQ 301 Query: 499 VFLE--QNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + L + + E + E Sbjct: 302 ECFPQVPQEDPEVLNQLQRAIDEQITVKFENFCQVINRWLEVSAFPFS---------EGL 352 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +L DI+E KQ + + A+ + S+ + VS T L ++ Sbjct: 353 ALYFRDITERKQ-EEQRKAAQYAVTYALASTSNLVDTVS----TILQSLCETLHWQLGIF 407 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVND 643 + + + + Y N S + + + Sbjct: 408 WRVDRHQQVLRYLNSWHNSSIDLEKFIEE 436 Score = 104 bits (259), Expect = 8e-20, Method: Composition-based stats. Identities = 48/419 (11%), Positives = 110/419 (26%), Gaps = 27/419 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 K F + + ++ E + L ++ L ++ Sbjct: 519 ERKRTEEALKESQNLFQSFMDHSPIAAFIKDETGQHIYVNAWFEQLFAGKEIIGLRDFEI 578 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + + L +S+ Q + F +S Sbjct: 579 YPQVAAQQFRANDLKVLDSNEVMQFLETLPQEDGEHYYVSFKFPFQDSSGRKLVAGVSMD 638 Query: 309 PSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNL---FYANPSFLLLTKYKSVDDIEIA 363 S +E L+ E VY L Y + L D + Sbjct: 639 VSDRIRAEEALRLSDERFRLAARAVKGIVYDWDVLSGTVYRSEGLYPLMGIHPDDVPQTR 698 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 S L L+ + L R ++ + + + +Q Sbjct: 699 DWWSERLHPDDLAR-IMPEMGFLIEGRGELYEFEYR---VRHEDGRWIEVWDQGYLLRDQ 754 Query: 424 FPENMPQNGIEPEDVDTRINKRK----MEI---EVMQLCSILEATSDGIAIINRE-GIIL 475 + G + + + + + +E E L ++L+ G+ + N G I+ Sbjct: 755 NGGLLRVVGFTSDITERKQAEAEKQQLLEQIKTEREFLEAVLQQMPAGVMVANAATGDIM 814 Query: 476 STNRAVSKLFGYP-----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKIT 529 TN + ++ + + H S+ + + E+ Sbjct: 815 LTNEQIKYIWRISSLLPFENIHQSERLYHGFHLSGRPYQLHEWPLFRSVKTGEVVREEEI 874 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + + + + +T +DIS+ KQ + L + + S Sbjct: 875 IFLRGDGTWGIMLVNSAPIRDTQGNIKAGVVTFYDISDRKQAEEALQESAQRLSLALSA 933 Score = 87.4 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 49/527 (9%), Positives = 124/527 (23%), Gaps = 37/527 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 W A G + ++ + +IG + ++ + + + Q Sbjct: 144 WIATAEGRILYLNPTYFRMFQFPQTDVIGKTIAEIYSEEFAQKFLENNRQVFETQQPVET 203 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 G + PI+ E G I + A K +++ S Sbjct: 204 IEVAPLHNGKTGQFLVY--KFPIFG-QGEEMLIGGVAI--DITERQEFEASLKAANQQIS 258 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 ++ E ++ P + +D + + Sbjct: 259 NILESITDGFIAFDRQWRYTYLNQEACRLLEKSPQELLGKTWQECFPQVPQEDPEVLNQL 318 Query: 259 YPLLTSEES-----------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + + E F + Q +++ +Y Sbjct: 319 QRAIDEQITVKFENFCQVINRWLEVSAFPFSEGLALYFRDITERKQEEQRKAAQYAVTYA 378 Query: 308 HPSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAG 364 S S D + + + F + ++ Sbjct: 379 LASTSNLVDTVSTILQSLCETLHWQLGIF-WRVDRHQQVLRYLNSWHNSSIDLEKFIEEN 437 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA--ASARLHTIQWNRENSLAMT--FIPFEK 420 T + + SD+ A L L + F + Sbjct: 438 QQKTFELGRGIPGGIWATRQGSFLSDQQTAKSGLQAVLAFPIGIGAEILGVIEFFSDQPQ 497 Query: 421 ANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 N I + ++ + + ++ S ++ + I + G + Sbjct: 498 KNDANLLELMKVIGSQIGQFMERKRTEEALKESQNLFQSFMDHSPIAAFIKDETGQHIYV 557 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N +LF ++I+ Q ++L + + E Sbjct: 558 NAWFEQLF--AGKEIIGLRDFEIYPQVAAQQFRANDLKVLDSNEVMQFLETLPQEDGEHY 615 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 +S + + + D+S+ + + L + + + Sbjct: 616 YVSFKFPFQDSSGRKLVAGVSMDVSDRIRAEEALRLSDERFRLAARA 662 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 20/236 (8%), Positives = 55/236 (23%), Gaps = 4/236 (1%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D +E L G + IG + +V D + +L + + Sbjct: 1190 LDQDLRYIYANEALAAINGVPLKEHIGRTVWEVLPAWASDIQVVVEQVLATKQPLLNQEV 1249 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 LY + P+Y + E G + ++++ L Sbjct: 1250 SGETNPPGLYRYGLVNYYPVYLPDGEVLGVG--ITSMDISELKRTEQALRESEERYRSLV 1307 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + Q ++ T +D + + + Sbjct: 1308 TASSQIVWRANHQGQFVDVQGWEEFTGQPVEELLAGSTAAIHPQDLERVRQIWYKAVKSK 1367 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ + + + + E + ++ + + Sbjct: 1368 TTYEVEHRIRKYDGTYEYFAIRGIPVLDAGGEVYTWVGMTTNIHQRKQAEMEREQL 1423 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 32/369 (8%), Positives = 82/369 (22%), Gaps = 36/369 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W + G ++ + +G ++IG + ++ + + T Sbjct: 27 WVLSWEGDCTYSNQPQAELMGKSKQEIIGNNIRELFPQWIGTEIEQKFHQIITEKTASNF 86 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFS 205 L T + P +G I+ + ++F Sbjct: 87 EYL----DTARQRWYEYRVNPT---------AQGLAILTIDITERKRTEKTFQESIEQFR 133 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + I P + K + L+ + Sbjct: 134 AFMNHSPASAWIATAEGRILYLNPTYFRMFQFPQTDVIGKTIAEIYSEEFAQKFLENNRQ 193 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEG 318 T + E H Q+ ++ Q + A Sbjct: 194 VFETQQPVETIEVAPLHNGKTGQFLVYKFPIFGQGEEMLIGGVAIDITERQEFEASLKAA 253 Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 ++ F + Y N L + + + P++ Sbjct: 254 NQQISNILESITDGFIAFDRQWRYTYLNQEACRLLEKSPQELL-GKTWQECF---PQVPQ 309 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L R+ I + + + FP + + Sbjct: 310 EDPEVLNQLQRAIDEQITVKFENF----------CQVINRWLEVSAFPFSEGLALYFRDI 359 Query: 438 VDTRINKRK 446 + + +++ Sbjct: 360 TERKQEEQR 368 >gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1] gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 1156 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 115/497 (23%), Positives = 207/497 (41%), Gaps = 25/497 (5%) Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 N + + N Y +PS+ + ++ + + +++ Sbjct: 532 NRMELALAGSKTAVLDWDFRDNSMYISPSWKEMLGFRDDEL----PNAPSSWFRRAHTED 587 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 ML ++ I H ++ + + + ++ + + G + Sbjct: 588 KKTILAMLREHEKNKIRFFESNHRLKHKDGHWVWVLGRAQILFDENGKKVRMIGTHTDIT 647 Query: 439 DTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + E ++ I+E DGI + EG + S N+ +LFGY +I+ K Sbjct: 648 KEK------ESQIKYFQQVQIMEQIHDGIVTTDLEGNVTSWNKGAEELFGYSQSEIIGKH 701 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 ++ + + + L + TK +K++ + + + L Sbjct: 702 ISLIYRKKDIPGIKERIRASLE--ETGLYQGDLTFITKSKKIIPVSLSLSLLKDEHGNVA 759 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI++ K+++ L AK+ AE+ + KS+FLA +SHEIRTPL+AI+GF +++K Sbjct: 760 GRIGINQDITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFIDLLKK 819 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + EY + ID S +L I+ D+LD SKIESGK+ + S I Sbjct: 820 ENI----EKKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIEFETII 875 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L EK I + ++P I D +KQI N+LSNAI FT G +I ++ + Sbjct: 876 HLFLAKCAEKDIALTLILDESLPETIHTDPLRIKQIISNLLSNAIKFTDQGKKITVTINY 935 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 N + + V+D G G+ +L + F Q +S GTGLGL ++ +V G+ Sbjct: 936 K-NGFLNVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTGLGLTISYRLVKILGGE 994 Query: 792 FYIFSTPAKGTLIEIIF 808 ++ S G+ Sbjct: 995 LHVKSKVGAGSEFYFSI 1011 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 5/138 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G + ++ + G ++IG + + I I L+ + G Sbjct: 673 TDLEGNVTSWNKGAEELFGYSQSEIIGKHISLIYRKKDIPGIKERIRASLEETGLYQGDL 732 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 T + +P+ L+ + + +G GI + +K Sbjct: 733 TFITK--SKKIIPVSLSLSLLKDEHGNVAGR--IGINQDITQRKKDEKSLLKAKRKAEES 788 Query: 208 HEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 789 AKSKSEFLANMSHEIRTP 806 Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 8/154 (5%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + +N+ E L + LE + DGI ++ L N+ + +FGY + K Sbjct: 388 DALTNLLNRTNQERMEEDLIA-LEKSQDGILVL-ENDTFLQCNQKILDMFGYSTTENFVK 445 Query: 496 PFTVFLEQNTPSVM------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + L + + + E + + E +++ + + + Sbjct: 446 AYPHKLFPGKQPDGSYSSVKMEKMKALTKKNGSHQFECLNVKQNGEPFWVNIILSYRMIN 505 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + ++++ K ++N+ S E + Sbjct: 506 EKEIFHMVYRNVTDKKNQENENSFITNRMELALA 539 >gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1349 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 109/535 (20%), Positives = 205/535 (38%), Gaps = 24/535 (4%) Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339 + + F + + E E V S G Sbjct: 404 ALISPQPLFTPEGEYRGSLLAATDITARKTAERALQKSEEQYRELVHSANSIIMKTDSLG 463 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + N Y + + L T+L PK M+ + Sbjct: 464 RITLFNEYAQKFFGYSEEEVL-GKSLLETIL--PKEDSLGRDMVFMMEKFLEDPDRFRIN 520 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 H + + + + + ++ E + I + R+ ++ + + + + Sbjct: 521 DHENEKKNGDRVWVMWTNKAIRDEQGELVEILSIGSDITSRRMMEQAIRESEERFRYLAD 580 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 AT + I I EG+ L N+A S +FGY +++++ + + L ++ + Sbjct: 581 ATHEAILIA-EEGVCLVANQAASDMFGYSLQELVGDSCLKLFAGEGRTD-LNILADMYAG 638 Query: 520 DLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 K TL K+ + + + L + DI+ K+ + L +A Sbjct: 639 PP-----KETLALRKDGSSFPVEVKSNAMQYRDKEVTVLAIQDITYKKRSEEALRYAAVE 693 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 + K +FLA +SHEIRTP+ IIG + ++++ N + I S + Sbjct: 694 -RAANKAKGEFLANMSHEIRTPMNGIIGMASLLEDTPL----NNEQKDLLQTISSSAESL 748 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LD SKIE+GK++L V + +L+ A +K + I + ++ +P + Sbjct: 749 LRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISHKVPSK 808 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752 ++ D ++Q+ +N+ NAI FT G ++I+ + + + DTG+G+ Sbjct: 809 VVGDPGRLRQVLMNLTGNAIKFTSKG-EVIVRALVDEEDRGGATLRFEIIDTGIGVPQSR 867 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 L + F Q S R GTGLGL ++K + GK S +G+L Sbjct: 868 LSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRLMGGKIGAESKEGEGSLFWFT 922 Score = 94.3 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 38/375 (10%), Positives = 101/375 (26%), Gaps = 26/375 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID +G+L + +L + G ++ +R+ D+ D + L K+ + Sbjct: 334 IDVNGHLTYANPKLLEKSGYTFDEIKKIRISDIFDPNNKGVWKSQMALQKQGLGDQFELR 393 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G + ++ P+++ E+ G ++ ++++ L Sbjct: 394 LVRKDGG--VIDALISPQPLFTPEGEYRG--SLLAATDITARKTAERALQKSEEQYRELV 449 Query: 209 EIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 I + K+ + ++ + Sbjct: 450 HSANSIIMKTDSLGRITLFNEYAQKFFGYSEEEVLGKSLLETILPKEDSLGRDMVFMMEK 509 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L + + N ++ +++ E E LS + + ++ Sbjct: 510 FLEDPDRFRINDHENEKKNGDRVWVMWTNKAIRDEQGELVEILSIGSDITSRRMMEQAIR 569 Query: 321 LTPETVDKCPI----PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + E + G AN + + Y + + L + Sbjct: 570 ESEERFRYLADATHEAILIAEEGVCLVANQAASDMFGYSLQELVG--DSCLKLFAGEGRT 627 Query: 377 D--------NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 D K + R D + + + +Q+ + + + E + Sbjct: 628 DLNILADMYAGPPKETLALRKDGSSFPVEVKSNAMQYRDKEVTVLAIQDITYKKRSEEAL 687 Query: 429 PQNGIEPEDVDTRIN 443 +E + Sbjct: 688 RYAAVERAANKAKGE 702 Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 13/161 (8%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 I + ++ + ++E +DG+AII+ G + N + + GY ++I + + Sbjct: 308 IASQALKRSEERYRQLVETMNDGLAIIDVNGHLTYANPKLLEKSGYTFDEIKKIRISDIF 367 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLT 557 + N V +++ + K+ ++ I + L L Sbjct: 368 DPNNKGVWK---SQMALQKQGLGDQFELRLVRKDGGVIDALISPQPLFTPEGEYRGSLLA 424 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS------HKSDFLARV 592 DI+ K + L +++ + K+D L R+ Sbjct: 425 ATDITARKTAERALQKSEEQYRELVHSANSIIMKTDSLGRI 465 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 7/147 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTW 143 D+ G + +E K G +++G L + L D + L+ + + Sbjct: 458 KTDSLGRITLFNEYAQKFFGYSEEEVLGKSLLETILPKEDSLGRDMVFMMEKFLEDPDRF 517 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + V + I E G + +++ Sbjct: 518 RINDHENEKKNGD-RVWVMWTNKAIRDEQGELVEILSIGS--DITSRRMMEQAIRESEER 574 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP 230 F +L + + +E + + Q+ Sbjct: 575 FRYLADATHEAILIAEEGVCLVANQAA 601 >gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1175 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 124/708 (17%), Positives = 256/708 (36%), Gaps = 46/708 (6%) Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + ++ W + L + N + + +E R +G Sbjct: 208 VQKAIQFGTPWDAELQL--VTAKNREIWVRALGKA---EFKEGVCVRLYGAFQDINERKI 262 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY------ 246 + ++F + + + + + + Sbjct: 263 AQLDYNVTKERFEKIVQNSAIGIILVHVDGHLLLANPASLKIFGFQEEQLNEALKLTFRN 322 Query: 247 YAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + H D + + L+ S + F+ I+ + + ++ +S Sbjct: 323 FIHPDFLEEAINYRAQLIAGAIDSYQMEAKFYRIDRVEIWCRLSVSLVKGEDGIKDRIIS 382 Query: 305 HRNHPSLSAYFD----EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359 + + + E + P V G+ N + + YK + Sbjct: 383 QVEDITERKHLEFKAKEHAKRFTTAFEYSPNGMGMVSIEGDWLMVNQNLASIFGYKKEEF 442 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 I S+ L P ++ + L + + R + + + + Sbjct: 443 INKR---SSELTHPDDLKKDSKQLKALINLEIDTYSIEKRF--VHRSGKIIHGL-LNVSV 496 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREGIILSTN 478 ++ + G + ++ ++ + + ++ AT+ I N +GII N Sbjct: 497 VTDEQGTPLYLIGQISDLSKRVKAEQALQKSLTEFQQLMNATTKVSIMETNLDGIIQKFN 556 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 R L GY E+++ + + + + + K+ Sbjct: 557 RGAENLLGYTAEEVVGRMNVSSFHTEEEFIEREADHQ-------KFYDAEWTYKRKDGST 609 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 ++++I + + Y DIS K+ + L A+K AE + KS+FLA +SH Sbjct: 610 FPVKLVITPVHNETGDVFGYLGVAIDISNLKEMEYSLVEARKKAEAANRSKSEFLANMSH 669 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL IIGF++++ P +Y + S N ++D++ND+LD SKIE+GK Sbjct: 670 EIRTPLNGIIGFTDLLMQTSLAPF----QQKYMQTVHNSANTLMDLINDILDFSKIEAGK 725 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 + L+ E L E ++ + +V+ A++K + + + ++ R + AD ++QI +N+L Sbjct: 726 LELNEERTDLIELCTQTVDIVKHQAHQKGLEMLLQISPDVKRFVQADSIRLRQILINLLG 785 Query: 714 NAIHFTPSGGQ-IIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NA+ FT G + ++ + E +RDTG+G+ + K F Q S Sbjct: 786 NAVKFTDQGEVALTVTASNTIAQENEAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTT 845 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G+GLGL ++ +++ K + S G+ L P Sbjct: 846 RKYGGSGLGLTISNRLLNLMGSKLKVNSVQGTGSTFYFDLKLKTEEEP 893 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 28/287 (9%), Positives = 79/287 (27%), Gaps = 22/287 (7%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFT--WNIDA--------HGYLKEISEELPKTIGN 108 +S + F RFT + G +++ L G Sbjct: 378 DRIISQVEDITERKHLEFKAKEHAKRFTTAFEYSPNGMGMVSIEGDWLMVNQNLASIFGY 437 Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 + I R +++ + ++ L +T+ + G ++ ++++ Sbjct: 438 KKEEFINKRSSELTHPDDLKKDSKQLKALINLEIDTYSIEKRFVHRSGKIIHGLLNVSV- 496 Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHLHEIKKGHSSVEKEKYD 223 + G I +++ +AL K L + + ++ ++++ Sbjct: 497 -VTDEQGTPLYLIG-QISDLSKRVKAEQALQKSLTEFQQLMNATTKVSIMETNLDGIIQK 554 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + V + H ++ E + + + + + + Sbjct: 555 FNRGAENLLGYTAEEVVGRMNVSSFHTEE----EFIEREADHQKFYDAEWTYKRKDGSTF 610 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 K + N + + F YL S + + + Sbjct: 611 PVKLVITPVHNETGDVFGYLGVAIDISNLKEMEYSLVEARKKAEAAN 657 >gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1324 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 128/805 (15%), Positives = 260/805 (32%), Gaps = 64/805 (7%) Query: 59 QESVSNTNYLDSENTFVFDPI------PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 + VS F + + +D G ++ L + G Sbjct: 253 AQVVSELLSAAEGAAFRKRAEQYRDLYDNAAQGLFRLDTAGRPLAVNTTLARLFGCRDAN 312 Query: 113 MIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 + ++ +D L + + + +T + +G+ + + A Sbjct: 313 DCLRQARTDEHLVRLDIPQRRELLVRALGQADPVFFETHFYHHDGSMARIKCYVRAQ--R 370 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 G + A H+ E+ + + + + Sbjct: 371 DALGSPVCLEGACADFSALPPPENAAGENGYRSIVEHITELICRIDAAGRLLFVNTAFAR 430 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + +D L + ++ + + + ++ + Sbjct: 431 YWGKTAEACVAENFRSPMPDEDADLVARRLAAISPVRPTTGFEHRVLRPDGRIRWQRWIY 490 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYS-HGNLFYA 344 + + + EY + + +E ++ P+ F Sbjct: 491 RAMFDEAGTLCEYQAVGRDVTARKLAEERLRAEHARARNMLEALPLAVFFKDVERRFTGC 550 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI------AASA 398 N +F + + G L L +AI +L + R A A Sbjct: 551 NQAFETQSGIARERLVG--GTLDDFLGEADARPYHAIDRELLAKGGRQVYEAVLPTPAGA 608 Query: 399 RLHTIQW----NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD--------------- 439 R + + ++A + + ++ Sbjct: 609 RHMIVHKGLLHDAGGAVAGIIGAAIDITERKLADRAAVQVRDALEAEALRLRQRMAGAIE 668 Query: 440 -TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + ++ E L ++L DGI ++ + + S+N+A+ L+ +++ + Sbjct: 669 AREQAESRLRRERRFLDTVLSGIQDGICVLTPDLTVTSSNKAMRALYA-ERGEMVGRKCF 727 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSL 556 + L+ + S + L S Sbjct: 728 DLFHGRGMPCNDCPSLRALATSKLAISLVPKIESGSASGWVELFCYPLFDDDGVVSGVVE 787 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ K+ + +L+ A + AE S K FLA +SHEIRTPL A++G+ +++ R Sbjct: 788 IVRDITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLADRLE 847 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P R E ++ S +L I+ND+LD SKIE+G+M L EP L + + + Sbjct: 848 P----RQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKEQE 903 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A K + + A N+P + D ++Q+ N+++NA+ +T GG + + Sbjct: 904 VLAKAKGLDLVLDIAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGG-VRLGVAIADAP 962 Query: 736 -----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + V DTG+G+ + E F QI R GTGLGL + + + Sbjct: 963 CAASGGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAICRRL 1022 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 G + STP +G+ + P Sbjct: 1023 AGLMGGTISLESTPGQGSAFRLECP 1047 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 26/367 (7%), Positives = 77/367 (20%), Gaps = 17/367 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + + + + V Q+P + + Sbjct: 24 TSAGQAARTLLDAGAGEALVLDGGRPLGVVTTRGLARVLVQTPDTAAHLAVRDLMDPVAV 83 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEYLSHR 306 + D L LL + L + + Sbjct: 84 SLDTDYLPAALRHLLAAPSRRLAVVDAKGRAVGILAPFHVTRLCGQIGEFPGRTVASAMA 143 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 +A + ++ + V A T +V + + Sbjct: 144 RAVVTAAVGETLPSVLARMIRTGVGGVVVAEADRPRGA------FTTRDAVALLAGGRDI 197 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + V + A S + + + Sbjct: 198 ANCRVEAVMRAPV----VAISPQLPLTEAVSG------MDGAGAGRLAVTDAAGYLLGLL 247 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 ++ + Q + + + G+ ++ G L+ N +++LFG Sbjct: 248 TWTDVAQVVSELLSAAEGAAFRKRAEQYRDLYDNAAQGLFRLDTAGRPLAVNTTLARLFG 307 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + + + + +L + T + + ++ ++ Sbjct: 308 CRDANDCLRQARTDEHLVRLDIPQRRELLVRALGQADPVFFETHFYHHDGSMARIKCYVR 367 Query: 547 KLPFSSC 553 + Sbjct: 368 AQRDALG 374 >gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 642 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 116/499 (23%), Positives = 226/499 (45%), Gaps = 30/499 (6%) Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + L PI V G+ NP+ + Y + + S+ Sbjct: 10 QALFEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPA------TDYIYSE 63 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 K +L D S + + A + + +Q + + Sbjct: 64 CINNKDKLLQSLDEASSTISVEKQFVHRDGNVIWASIHVSLVRDDQDQTPLFFISQIVDI 123 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D+++ ++K++ + + S+ + D I N EG I++ N+ +L G+ + +++ Sbjct: 124 TDSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKI 183 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCY 554 + + + + + + ++ + K+ + + + + + + Sbjct: 184 SNLIGERNLARVLSSAADYVAAEKGINCIH-----HKDGHQVEVLATLAPIVIHGKNVGF 238 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + D++E K+ L K+ AEK + KS+FLA +SHEIRTP+ +IG +++I Sbjct: 239 YIIAKDMTEQKR----LIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE 294 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + EY I +SG +L+I+ND+LD SKIESG+ L E SL A+SE +++ Sbjct: 295 L----DEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNM 350 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I + TS A+++P ++ D+ ++Q+ +N+LSNAI FTP+G + IS Sbjct: 351 ILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCVR 409 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ + V DTG+G+ + ++ + +PF Q+ + + EGTGLGL + K +V Sbjct: 410 DQANSELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMG 469 Query: 790 GKFYIFSTPA-KGTLIEII 807 G + P +G++ Sbjct: 470 GDIWYERNPNQQGSVFTFT 488 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 15/144 (10%), Positives = 41/144 (28%), Gaps = 4/144 (2%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150 G ++ K G +++ D I+ + + L + +T + Sbjct: 30 EGSWISVNPAACKMFGYTDEELMAQPATDYIYSECINNKDKLLQSLDEASSTISVEKQFV 89 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G ++ I ++ + + F IV + ++++ L + Sbjct: 90 HRDGNVIWASIHVSL--VRDDQDQTPLFFISQIV-DITDSKVAEQKLQESIERYTSLKKY 146 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL 234 + I + L Sbjct: 147 NHDAIISFNLEGRIINGNQMAEQL 170 >gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 837 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 115/500 (23%), Positives = 212/500 (42%), Gaps = 16/500 (3%) Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 ++ E + V +G + N + Y+ + I + + Sbjct: 348 QALEKSEERYRSIFETAASLITSVDENGTIVDCNNQIKNILGYEKEEVIGQS------MT 401 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 D +L+ + + ++ + E + + Sbjct: 402 KIIHPDYVNKSFEILHEILNYGFSYNKEYKMVRKDGE-LIDVLINSSGVDKINGNYSRTI 460 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + ++ + +++ + + E +D I + +G IL N + GY + Sbjct: 461 CIINDITKSKEFEHELKKSEEKFRKVTEQAADVIIAYDFDGNILYVNNLACEKLGYTKNE 520 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLP 549 +L T +N Y + + ++ T K+ + LR+ + L Sbjct: 521 LLSMNITDIDPENNIETYRKYWYGLSQNN---SVHIETSRKRKDGSVYPAELRMTLIDLN 577 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 D++ K+ + L +AK AE S KSD LA V+HE+RTPLT+IIGFS+V Sbjct: 578 GKPVILGFSRDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPLTSIIGFSDV 637 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + G L N Y + + +G +LD++ D+LD+SKIESGK L++E +S+ E V+ Sbjct: 638 LLKGKAGDL-NESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYERISIIELVN 696 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + +Q + + K +++ + + + I AD +KQI N+L NA+ FT G I + Sbjct: 697 DLKEYIQPFVSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEEGS-ITLEV 755 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ V V DTG+G+ E F Q+ + + +GTGLGL L +V+ + Sbjct: 756 SQNEDD-VQFSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVNKLVNMHG 814 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ ++ S KG+ P Sbjct: 815 GQIWVESEIKKGSRFTFTIP 834 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 9/192 (4%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 +TF+ + + + + + + E + E + I Sbjct: 3 GGCINHLTFLLSTSPIKVENESKVLVNFLDISERKKVQEDLRKEKKFFERVAETSPISIT 62 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-----EILSLDL 521 +++ G I+ N K+ G DI R+ + + T N + E++ Sbjct: 63 HLDKSGNIIYANHTAEKVLGLSKNDINRRTYDDVKWKITDYDGNDFPQDELPFELVKKYH 122 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKI 577 + + K K + L I + + DI++ K ++ L HA Sbjct: 123 QPVYDVQHAIEWKNGKRIYLSINAAPIFDKYGNFDGMIAAIEDITKQKNTESNLEHALYN 182 Query: 578 AEKESSHKSDFL 589 + + ++ L Sbjct: 183 SHEREKEINELL 194 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 29/210 (13%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350 ++N SK +L + + + + PI + GN+ YAN + Sbjct: 20 VENESKVLVNFLDISERKKVQEDLRKEKKFFERVAETSPISITHLDKSGNIIYANHTAEK 79 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + D ++ + + H I+W Sbjct: 80 VLGLSKNDINRRTYDDVKWKITDYDGNDFPQDELPFELVKKYHQPVYDVQHAIEWKNGKR 139 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----------EVMQL----CS 456 + ++ +++ + + + +E E+ +L + Sbjct: 140 IYLSINAAPIFDKYGNFDGMIAAIEDITKQKNTESNLEHALYNSHEREKEINELLNATRT 199 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFG 486 ILE + N A +F Sbjct: 200 ILE--------------VNDFNTAARYIFD 215 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/196 (11%), Positives = 71/196 (36%), Gaps = 9/196 (4%) Query: 35 ETEKSKKENPCHDSFEQ-SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E + + +F + + +N ++ + +F+ ++D +G Sbjct: 319 EGGFTDNDAQLAKTFGEYAAIALKNSKAFQALEKSEERYRSIFET---AASLITSVDENG 375 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPI 152 + + + ++ +G ++IG + + +++ + I ++L ++ + + Sbjct: 376 TIVDCNNQIKNILGYEKEEVIGQSMTKIIHPDYVNKSFEILHEILNYGFSYNKEYKMVRK 435 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G + V I+ + + N +S R I++ + K+ ++KF + E Sbjct: 436 DGELIDVLINSSG--VDKINGNYS--RTICIINDITKSKEFEHELKKSEEKFRKVTEQAA 491 Query: 213 GHSSVEKEKYDIFSQQ 228 +I Sbjct: 492 DVIIAYDFDGNILYVN 507 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 16/141 (11%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + ++ + +G +++ M + D+ +I+ L + N+ + +T+ Sbjct: 498 DFDGNILYVNNLACEKLGYTKNELLSMNITDIDPENNIETYRKYWYGLSQNNSVHIETSR 557 Query: 150 WPIEGTNL-----YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +G+ IDL P+ GF V + + Sbjct: 558 KRKDGSVYPAELRMTLIDLNGKPV------ILGFS-----RDMTVQKEAEENLINAKLEA 606 Query: 205 SHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 607 EAASQAKSDILANVNHELRTP 627 >gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 729 Score = 386 bits (991), Expect = e-104, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 185/389 (47%), Gaps = 15/389 (3%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 V R ++++E + +I +T+D I + + +G I+ N+A + GY +++L Sbjct: 345 MWRIVQRRKTEKELEKSEDKFRTIFASTNDAIFVHDLKGNIMEVNKAACETTGYSRDELL 404 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFS 551 R + + + E+ +++ + + I + + Sbjct: 405 RMKTKDINTGLSMEEIPQRIKEVKEKGHAI---FEATFRREDDTTIPVEISARMIEYNDK 461 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSHEIRTPLTAII 604 + DI+E K+ + +L + K + K +FL+ VSHE++TPLT+II Sbjct: 462 PTILVVARDITERKRAEEELRKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSII 521 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G++E++ + G LG + R+ + +V+ LL +S+ ++G + FE +++ Sbjct: 522 GYTELLNDGSLGELG-EEQKHAEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLNI 580 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 E + I +Q+ EK + + ++P+I D + + NI+ N+I FTP GG Sbjct: 581 SELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGS 640 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I I + + ++DTG+G+ ++ + F QI +SQ+ + GTGLGL + K + Sbjct: 641 ITIFANKEDE-YIHINIKDTGIGIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKTI 699 Query: 785 VDANMGKFYIFST-PAKGTLIEIIFPLYD 812 V+A+ G+ ++ S KGT + I P+ + Sbjct: 700 VEAHEGEIWVESEGKGKGTEVHIKLPVAE 728 Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 5/163 (3%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ + GI + D + M + I E + GI + G+I N Sbjct: 37 PNISEDGILLGGIGIFEDISDRMKAEEAMRESEKKYRLIFENSPLGIFHFDENGVITHCN 96 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + + + I+ L+ M + + K + K+ Sbjct: 97 ENIMHILDVTRDQIIGFNMLKDLKD---KKMYEAVKAVFQRRSGHYEGKYHSTTGKKATP 153 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + DIS+ + + L + E Sbjct: 154 IKADYSPYISEDGELLGGVGIVEDISDRMKAEEALHLDESRLE 196 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 29/160 (18%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE-- 361 ++ E+ FV+ GN+ N + T Y + + Sbjct: 348 IVQRRKTEKELEKSEDKFRTIFASTNDAIFVHDLKGNIMEVNKAACETTGYSRDELLRMK 407 Query: 362 ---IAGGLSTLLDAPKL----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 I GLS ++ +AI R D T I I++N + ++ + Sbjct: 408 TKDINTGLSMEEIPQRIKEVKEKGHAIFEATFRREDDTTIPVEISARMIEYNDKPTILVV 467 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + + ++ L Sbjct: 468 AR-------------------DITERKRAEEELRKYAQDL 488 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 69/241 (28%), Gaps = 12/241 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + E+++ +T G +++ M+ D++ L ++ +K + + T Sbjct: 380 DLKGNIMEVNKAACETTGYSRDELLRMKTKDINTGLSMEEIPQRIKEVKEKGHAIFEATF 439 Query: 150 WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + T +P++++A I Y+ + ++ + S + Sbjct: 440 RREDDTT--IPVEISARMIEYNDKPTI-----LVVARDITERKRAEEELRKYAQDLSKAN 492 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV----LKTEKYPLLTS 264 E K ++ E S + P + L + + + Sbjct: 493 EELKSLDKMKDEFLSNVSHELKTPLTSIIGYTELLNDGSLGELGEEQKHAEETVMRNTKR 552 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + E L + + E P+ Sbjct: 553 LQRLVDSLLYLSRTQAGTVQYDFETLNISELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQ 612 Query: 325 T 325 Sbjct: 613 I 613 >gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1] Length = 1271 Score = 385 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 112/549 (20%), Positives = 209/549 (38%), Gaps = 48/549 (8%) Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339 + L + S + + + ++ L + ++ G Sbjct: 248 GRRRILTSGSFLHDISGKYAGGVQVFADITERNLMEQSLRLHMHANNSSVESVSIFDIGG 307 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 NL YANP+ L + G+ + + Sbjct: 308 NLTYANPAAEDLFGMDGSQLLG--LGIEQAYQ-------------------GGEMVLLSL 346 Query: 400 LHTIQWNRE---NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR-------INKRKMEI 449 + W E N + + + + + + E Sbjct: 347 IRGKSWKGEVSQNGKILYIHANPIRLPKGNIIGFYVSARDITAHKATQLKLQQAREETER 406 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E +L +I+ + IA+++ EGII N + G ED++ K + Sbjct: 407 EAAKLRAIISIMNAAIALVDAEGIITEINEQCLTITGKVREDLIGKKLESLHNGKILEKI 466 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEK 568 + + T+ + + I + L + D++E + K Sbjct: 467 QKMIANFRLNRNSSPV---TITRRVGGMDVIMNIQPVYRDKTYDGVLLMVVDVTEVAKAK 523 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + A +AEK S KS+FLA +SHEIRTP+ I+GF+EV+ Q P + E Sbjct: 524 RQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSP----QQQESVK 579 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + G ++D++ND+LD+SKIESGK+ + SL + + EA+++++ E+ + ++ Sbjct: 580 IIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFLEQNVEMKI 639 Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRV 741 N+ ++ D ++Q+ N++SNA FT G + IS ++ + Sbjct: 640 DIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQG-YVKISVAEESISGADHQIKLRFCI 698 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ +L+ F Q S + GTGLGL + K++ G+ + S KG Sbjct: 699 EDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEINVESQVNKG 758 Query: 802 TLIEIIFPL 810 ++ P+ Sbjct: 759 SIFSFYIPV 767 Score = 84.7 bits (208), Expect = 6e-14, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 7/162 (4%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G E + + RK+ E +L +I E+ ++ + +++ I N A + F E Sbjct: 145 EGPESRLAELQSINRKLTNEKNKLWTIFESMTECVFVVDSNMKITEINAAAAAYFQVNPE 204 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++L + + H + S + +E ++L+ L Sbjct: 205 EVLGLNCSELMGCECREEDCHLFHAMKSGGCYKDVELEIKTQKGRRRILT---SGSFLHD 261 Query: 551 SSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 S DI+E + L S F Sbjct: 262 ISGKYAGGVQVFADITERNLMEQSLRLHMHANNSSVESVSIF 303 Score = 74.7 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 35/365 (9%), Positives = 95/365 (26%), Gaps = 16/365 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D++ + EI+ +++G+ ++ + + H+ +K + Sbjct: 179 VFVVDSNMKITEINAAAAAYFQVNPEEVLGLNCSELMGCECREEDCHLFHAMKSGGCYKD 238 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + I + ++ + +++G G + N + + Sbjct: 239 VELEIKTQ--KGRRRILTSGSFLHDISGKYAG--GVQVFADITERNLMEQSLRLHMHANN 294 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E Y + + + + + Y + VL + Sbjct: 295 SSVESVSIFDIGGNLTYANPAAEDLFGMDGSQLLGLGIEQAYQGGEMVLLSLIRGKSWKG 354 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 E S + + N + K G + + + + Sbjct: 355 EVSQNGKILYIHANPIRLPKGNIIGFYVSARDITAHKATQLKLQQAREETEREAAKLRAI 414 Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + V + G + N L +T D I L +L + L + Sbjct: 415 ISIMNAAIALVDAEGIITEINEQCLTITGKVREDLIGKK--LESLHNGKILEKIQKMIAN 472 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + + + + M P + + + + K Sbjct: 473 FRLNRNSSPVTIT------RRVGGMDVIMNIQPVYRDK---TYDGVLLMVVDVTEVAKAK 523 Query: 445 RKMEI 449 R+ E Sbjct: 524 RQAEQ 528 >gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 1255 Score = 385 bits (990), Expect = e-104, Method: Composition-based stats. Identities = 135/752 (17%), Positives = 274/752 (36%), Gaps = 52/752 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G + + ++ +G + G ++ + + ++ + + Sbjct: 519 DVDGTILDANQSFLNLVGYDREDLTSGRLNWRSLTPPEQLAASEDTLTAMQHCTSAILEK 578 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G VPI L + F+G RG V + ++ +++F Sbjct: 579 EYIHSDGH--RVPILLGGV-------RFAGSQTRGVSFVLDLSERKQTQQALQKANERFE 629 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPP-----HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + D + L ++ H +D+ K ++ Sbjct: 630 LAAAAVTSLIWEWDLQTDQVERSCGLVELTGYGLEEAEPTANWWLEKIHPEDLAKMDQAS 689 Query: 261 LLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + ++ +++ + S F+ Sbjct: 690 FFQQLPVLDRYAGEYRIRHKEGHYVWVEERGLVVKDLQGNPIRIVGSTTDISDRKEFELA 749 Query: 319 ENLTPETVDK-----------CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + ET+ P+ ++ + N + + +E G Sbjct: 750 LQASQETIRSQLLEIEAIYQTAPVGLGWLDQNLCFQRVNQALADINGV----ALEDHLGR 805 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + PKL+D + + + T + F N E Sbjct: 806 TVREVIPKLADLAEPLLRQVLETGEPRLNVEIEGETAAAPGLRRTWLE-SWFPVRNSSAE 864 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 N + E + + ++++ + ++ DGI +I R GI + N A KL G Sbjct: 865 VSGINLVVQEVTERKQAEQELRASEERYRQLVTICPDGI-LIQRGGIFMFANPAALKLLG 923 Query: 487 -YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 E ++ P F+ Q+ ++ L + + +E+ L + + Sbjct: 924 AVTPEQVIGHPVLEFIHQDDHELVLERLHRLAEGEAVPPIEEKWLCLNGTIAHTEVAAVP 983 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRT 598 + + DI+E KQ + + A++ AE+ + K +F+A VSHE+R+ Sbjct: 984 LLYQNQPAVQVVIRDITERKQLEQQRELLLVAAEVAREEAEQANRAKDEFIAVVSHELRS 1043 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL AI+G++++++ + F P I+R+ + ++ DLLDIS++ G + L+ Sbjct: 1044 PLNAILGWAKLLQTRSFEP---AMLRRGLETIERNVETQVQLIEDLLDISRMVRGTLRLN 1100 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 F PV+L V E + +Q K++ + + R+ DL ++QI N+L+NAI F Sbjct: 1101 FMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGDLHRLQQIFANLLTNAIKF 1160 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP+GGQ+ + +V + V DTG G+ L F Q ++++ + EG GLGL Sbjct: 1161 TPAGGQVEVRL-VNCGAQVQIMVIDTGKGIAADFLPYIFDRFRQGNDAREPQ-EGLGLGL 1218 Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 + + +V+ + G S P +G + P Sbjct: 1219 AIVRHLVELHKGTIQAASAGPGQGATFTVTLP 1250 Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats. Identities = 60/534 (11%), Positives = 152/534 (28%), Gaps = 46/534 (8%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F F P V DA G ++E + +G+ A +IG L + + + Sbjct: 380 FNFAPDAYLV-----SDAQGLIQEANRAACLLLGSGAETLIGTPL--LLYVAEAERRQFR 432 Query: 134 GDLLKRQNTW----YGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 L + + + G I ++A I + GFR ++ Sbjct: 433 TQLYELNQSPVPQTQSFELHLRSDCGEPFPAAITVSA--ISDPQGKRIGFRW--LIRNIT 488 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLT 244 ++ + + L ++ I +L ++ L Sbjct: 489 ERKQAELALQQSEARLRQLVDLNLIGVMFWDVDGTILDANQSFLNLVGYDREDLTSGRLN 548 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFE-Y 302 + L + L + + E ++ + ++ + Sbjct: 549 WRSLTPPEQLAASEDTLTAMQHCTSAILEKEYIHSDGHRVPILLGGVRFAGSQTRGVSFV 608 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361 L + + + + + LT Y + Sbjct: 609 LDLSERKQTQQALQKANERFELAAAAVTSLIWEWDLQTDQVERSCGLVELTGYGLEEAEP 668 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 A + L+ + + A + I+ + + + Sbjct: 669 TANWWLEKIHPEDLAKMDQASFFQQL----PVLDRYAGEYRIRHKEGHYVWVEERGLVVK 724 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIAIINREGII 474 + + G + D + + ++ ++ +I + G+ +++ Sbjct: 725 DLQGNPIRIVGSTTDISDRKEFELALQASQETIRSQLLEIEAIYQTAPVGLGWLDQNLCF 784 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT---LEKIT-- 529 N+A++ + G +ED L + + + L ++L + +E T Sbjct: 785 QRVNQALADINGVALEDHLGRTVREVI-PKLADLAEPLLRQVLETGEPRLNVEIEGETAA 843 Query: 530 ---LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L T E +R ++ S +L + +++E KQ + +L +++ + Sbjct: 844 APGLRRTWLESWFPVRNSSAEV---SGINLVVQEVTERKQAEQELRASEERYRQ 894 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 48/363 (13%), Positives = 110/363 (30%), Gaps = 17/363 (4%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + + + S L + + + + L ++ E +N T + Sbjct: 290 ATQVGIALQQSELYQQARQELQERQQAETVLAALQQEHQHRAEQLEALNEELQTALEELQ 349 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349 + + E L + + P + V G + AN + Sbjct: 350 ITEEELRLQNEELFLSRQLQEEQQQRYQ-----DLFNFAPDAYLVSDAQGLIQEANRAAC 404 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 LL + I G LL + + S LH ++ + Sbjct: 405 LLLGSGAETLI----GTPLLLYVAEAERRQFRTQLYELNQSPVPQTQSFELH-LRSDCGE 459 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ + + + + + + ++ +L +++ G+ + Sbjct: 460 PFPAAITVSAISDPQGKRIGFRWLIRNITERKQAELALQQSEARLRQLVDLNLIGVMFWD 519 Query: 470 REGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +G IL N++ L GY ED+ R + + LT + LEK Sbjct: 520 VDGTILDANQSFLNLVGYDREDLTSGRLNWRSLTPPEQLAASEDTLTAM-QHCTSAILEK 578 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKS 586 + + + + + + S ++ D+SE KQ + L A + E ++ + Sbjct: 579 EYI--HSDGHRVPILLGGVRFAGSQTRGVSFVLDLSERKQTQQALQKANERFELAAAAVT 636 Query: 587 DFL 589 + Sbjct: 637 SLI 639 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 91/318 (28%), Gaps = 23/318 (7%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 V W +D + + +++ L G +G + +V L + +L+ Sbjct: 772 PVGLGW-LDQNLCFQRVNQALADINGVALEDHLGRTVREVIPKLADLAEPLLRQVLETGE 830 Query: 142 TWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 ++ + P+ + + E SG +V + Sbjct: 831 PRLNVEIEGETAAAPGLRRTWLE-SWFPVRNSSAEVSGIN--LVVQEVTERKQAEQELRA 887 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVS--SLTEYYAHKDDVLK 255 ++++ L I +++ +F+ + +V + E+ D L Sbjct: 888 SEERYRQLVTICPDGILIQRGGIFMFANPAALKLLGAVTPEQVIGHPVLEFIHQDDHELV 947 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 E+ L E+ P +E + +N + + + Sbjct: 948 LERLHRLAEGEAVPPIEEKWLCLNGTI--AHTEVAAVPLLYQNQPAVQVVIRDITERKQL 1005 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 ++ L + + AN + S + L+ +L KL Sbjct: 1006 EQQRELL--------LVAAEVAREEAEQANRAKDEFIAVVSHEL---RSPLNAILGWAKL 1054 Query: 376 SDNNAIKPVMLYRSDRTC 393 + +P ML R T Sbjct: 1055 LQTRSFEPAMLRRGLETI 1072 >gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1927 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 119/748 (15%), Positives = 261/748 (34%), Gaps = 41/748 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH--IGDLLKRQN 141 W+ + +S + +G ++ + + L ++ + Sbjct: 934 LWDWNPQNNELFLSSRWKEMLGYEDHEISSHLREWSSRVHPDDLQEVLRQVMDHLARKTD 993 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + + +GT Y ++ + R G KR Sbjct: 994 YYESEYRVRCKDGT--YKWTLDRGKAVWDETGKPI--RMVGSRRDITDAKQAAEELKRQK 1049 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + + +I L + T++ L+ + Sbjct: 1050 EVLQTIFDHIPVMIILFDPTGEIQLVNRALEKTLGWSLEEIQQTDFLVECYPDLQYRQKA 1109 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + Q+ + + + + ++ + A E ++ Sbjct: 1110 INHILYGNGQWQDFKTRVRDGRIIETTWANVELSDETKIGIGQDITIRKRAEAALQETQD 1169 Query: 321 LTPETVDKCPIPFFVYSH---GNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLS 376 ++ + + +T Y + I + L L + Sbjct: 1170 RLEFILNNSGAALYTCKATPNLATTFITQGVETMTGYIPEEFIYVPSFWLDHLHPDDQ-- 1227 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + V + + Q + N + + + + G + Sbjct: 1228 -KSILTEVTQLFENG----FHTYEYRFQRSDGNYIWVQDRMQVIQDTQGNPIECIGYWFD 1282 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDI 492 + + ++ +L I + + + + AV ++ E + Sbjct: 1283 ITHRKRMEEEIRNSEQKLREITSLVPGMVFQFGITSDEKYFFSFASDAVLTIYELTPEQV 1342 Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + ++ ++ L E + +EK + + + +KLP Sbjct: 1343 KEDAQCILALIKPEQLALFQEALEVSRQNLTDFYFEHQITTPSGKEKWVRVSSVPQKLPD 1402 Query: 551 SSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + D++ KQ + +L AK++A+ + KS+FLA +SHEIRTP+ AI+GF ++ Sbjct: 1403 QTVIWNGVTIDLTVEKQREAELKQAKEVADLANRAKSEFLANMSHEIRTPMNAILGFCDL 1462 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + R Y + I +G +L ++ND+LD+SKIE+GK+ L++EPV+L + Sbjct: 1463 L----NHLVTDNRGQFYLSAIASAGKTLLALINDILDLSKIEAGKLQLYYEPVNLPTLIQ 1518 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E + A EK+I + +++P I+ D ++QI N++ NA+ FT G + IS Sbjct: 1519 EIYQIFSQKAEEKQIKLLMEIDSSVPTGIIFDEVRLRQILFNVVGNALKFTEEG-YVKIS 1577 Query: 729 T--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + + + + DTG+G+ + + F Q + GTGLGL + Sbjct: 1578 LNSYHSETQDQEDSITLKITIEDTGIGIAPEQQTQIFDAFIQSDGQNNRKYGGTGLGLAI 1637 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K + GK ++S P +G++ F Sbjct: 1638 TKRLTTILGGKIELYSQPNQGSIFSFTF 1665 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 44/409 (10%), Positives = 113/409 (27%), Gaps = 27/409 (6%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHK 250 +A+ + ++ F + + + + ++ ++ + H Sbjct: 179 KAVLQESEQLFQTMADQAPVMIWISGTDTLCYYFNQVWLDYSGRTLEQEMGNGWAENVHP 238 Query: 251 DDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----H 305 +D L E S + + + ++ E Y+ Sbjct: 239 EDFQYCLDTYLKAFEKRESFQMEYRLRRWDEEYRWLLDHGTPRFSSEGEFLGYIGSCVDI 298 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTKYKSVDDI 360 + + +D PI FV G + N + L + + + Sbjct: 299 SDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEHLFGISAEEAL 358 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L ++ ++ I A Q + + + Sbjct: 359 GKT--RDELFPQEIPDFFRQKDRILFENNNIENIPAEIVES--QKLGQRI--LHTVKLPL 412 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNR 479 ++ + G + D E E L +LEA+ + I + N + N Sbjct: 413 YDETHQPKYILGFSEDITDRIKA----ETERTYLGQLLEASLNEIYVFNAQTLKFQYVNP 468 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + + GY E + + T + + + + + T + + Sbjct: 469 SALENLGYSWEQMQQMTPLDLKRTFTLTTFKQLILPLKEHQQERLI-FETYHYRSDGSVY 527 Query: 540 SLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + ++ + + + DI+E +Q + L A + E ++ Sbjct: 528 PVEVHLQLMERPEGNVFLAVILDITERQQAQLALQQAYEQLEIRVQERT 576 Score = 107 bits (268), Expect = 6e-21, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 94/290 (32%), Gaps = 15/290 (5%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLS 367 + A E E L D+ P+ ++ L Y N +L + ++++ G Sbjct: 176 RPIKAVLQESEQLFQTMADQAPVMIWISGTDTLCYYFNQVWLDYSG-RTLEQEMGNGWAE 234 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + ++ + +W+ E + + + E Sbjct: 235 NVHPEDFQYCLD-----TYLKAFEKRESFQMEYRLRRWD-EEYRWLLDHGTPRFSSEGEF 288 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE----GIILSTNRAVSK 483 + G + D + ++K++ L ++L+ + + + + G L N+ Sbjct: 289 LGYIGSCVDISDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEH 348 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 LFG E+ L K Q P + + + + + S K + + + Sbjct: 349 LFGISAEEALGKTRDELFPQEIPDFFRQKDRILFENNNIENIPAEIVESQKLGQRILHTV 408 Query: 544 II---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + DI++ + + + ++ ++ E + F A Sbjct: 409 KLPLYDETHQPKYILGFSEDITDRIKAETERTYLGQLLEASLNEIYVFNA 458 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 39/321 (12%), Positives = 87/321 (27%), Gaps = 47/321 (14%) Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKS 356 + ++ E E + + F++ Y +P+F + S Sbjct: 740 AARAVTELERQQAEQNLRESEEKFRQLAENIKEIFYIQDAQTFQTIYVSPTFSEIWGI-S 798 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 D + L + D ++ + + R I + Sbjct: 799 WDTLYQNPHLWM--ENIYPPDRAIVRANLQANRNEQEFNYEYR---IIRPDGQLRWIWAR 853 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKM-----------EIEVMQLCSILEA----- 460 F + GI + + + + + E +QL I+E Sbjct: 854 NFPVKDSSGNIYRIAGIAEDITERKQTQEALKTLNQNLENLVEERTVQLQQIIEQHQQTE 913 Query: 461 ----------------TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 T+DG+ N + L + ++ GY +I + + Sbjct: 914 EALRKSEERWQLAIYGTNDGLWDWNPQNNELFLSSRWKEMLGYEDHEIS-SHLREWSSRV 972 Query: 505 TPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 P + L +++ E K+ K + + + Sbjct: 973 HPDDLQEVLRQVMDHLARKTDYYESEYRVRCKDGTYKWTLDRGKAVWDETGKPIRMVGSR 1032 Query: 559 HDISEWKQEKNKLSHAKKIAE 579 DI++ KQ +L K++ + Sbjct: 1033 RDITDAKQAAEELKRQKEVLQ 1053 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 53/436 (12%), Positives = 120/436 (27%), Gaps = 39/436 (8%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE F V W ++ G + +G + Sbjct: 184 ESEQLFQTMADQAPV-MIWISGTDTLCYYFNQVWLDYSGRTLEQEMGNGWAENVHPEDFQ 242 Query: 129 P-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + +++ ++ + L + Y + P +S EF G+ G + Sbjct: 243 YCLDTYLKAFEKRESFQMEYRLRRWDEE--YRWLLDHGTPRFSSEGEFLGYIGSCV--DI 298 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNKV 240 + ++ K + + V + D F Q + + + Sbjct: 299 SDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEHLFGISAEEAL 358 Query: 241 SSLTEYYAH---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + D + ++ + ++P E + L Q L + + Sbjct: 359 GKTRDELFPQEIPDFFRQKDRILFENNNIENIPA-EIVESQKLGQRILHTVKLPLYDETH 417 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYK 355 + L + + + ++ +V++ L Y NPS L Y Sbjct: 418 QPKYILGFSEDITDRIKAETERTYLGQLLEASLNEIYVFNAQTLKFQYVNPSALENLGYS 477 Query: 356 -------SVDDIEIAGGLST----LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + D++ L+T +L + I YRSD + L ++ Sbjct: 478 WEQMQQMTPLDLKRTFTLTTFKQLILPLKEHQQERLIFETYHYRSDGSVYPVEVHLQLME 537 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK------RKMEIE---VMQLC 455 N + + Q + Q + E + + E ++ Sbjct: 538 RPEGNVFLAVILDITERQQAQLALQQAYEQLEIRVQERTAQLEQINQLLRQEVNDRHRIE 597 Query: 456 SILEATSDGIAIINRE 471 + L + G+ N + Sbjct: 598 TALCNIALGVTTTNSQ 613 Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 52/164 (31%), Gaps = 10/164 (6%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP 488 +++ + ++ + + + E + I + + + + S+++G Sbjct: 739 FAARAVTELERQQAEQNLRESEEKFRQLAENIKEIFYIQDAQTFQTIYVSPTFSEIWGIS 798 Query: 489 VEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + + + P + +++ L + Q + +L + Sbjct: 799 WDTLYQNPHLWMENIYPPDRAIVRANLQ---ANRNEQEFNYEYRIIRPDGQLRWIWARNF 855 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + SS + DI+E KQ + L + E ++ Sbjct: 856 PVKDSSGNIYRIAGIAEDITERKQTQEALKTLNQNLENLVEERT 899 >gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 998 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 112/530 (21%), Positives = 218/530 (41%), Gaps = 30/530 (5%) Query: 291 TLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347 L+ + E E ++ R A + + ++ P F + L N + Sbjct: 212 ELRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDPIFVINREHRLVLVNAA 271 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F L D + + + +++D++ + ++ S R + ++ Sbjct: 272 FCRLMSLPKEDLLGEE--VHDFCFSREMADDHWQRNEEVFNSRRETVVEEIHSYS---PG 326 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + GI + D + + ++ + +LE + + Sbjct: 327 APATVL-IKRIPIIDSDGK-WLIVGIIRDITDIKKAQERIRFQAD----LLEQVHNTVIA 380 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTL 525 + EG I+ N++ L G+ E+ + K + + ++S R Sbjct: 381 TDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEW---GLDKMNRVISDLIKDRGNW 437 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + K+ + + D++E K + L AK+ AE+ Sbjct: 438 DGEFYFKKKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDLTERKHIEEALKKAKREAEEA 497 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KSDFLA +SHEIRTP+ AIIG + ++ + P + I+ +G+ +L ++ Sbjct: 498 ARVKSDFLANMSHEIRTPMNAIIGMTSLLLEEPLTP----EQRDCIEVIETNGDALLTVI 553 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD SK+E+ K L ++ + V +++ LV + A K + + S ++P I+ D Sbjct: 554 NDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAANKGLNLAYSIDKSVPEMIVGD 613 Query: 701 LRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758 +KQ+ N+LSNA+ FT G + +S + VI VRDTG+G+ ++ Sbjct: 614 PSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVIQFEVRDTGIGIPQNRMKLLFL 673 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 PF Q+ S GTGLGL ++K +V+ G+ + S+ G+ Sbjct: 674 PFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESSEGTGSSFHFTI 723 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 45/343 (13%), Positives = 100/343 (29%), Gaps = 43/343 (12%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 P ++ + ++ + SA D EN D Sbjct: 42 PLRQAKAVFDSLLANDSANAQNNESPLGLQPHLKDEKPKSFQSAEQDPEENTMAPASDNR 101 Query: 330 PIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P+PF + S + N S+ S + + +S +L P++ Sbjct: 102 PLPFMLVHISSDQRYLFVNQSYANWLGLDSSEMVGR--HISDILPEEIYQ---TYLPLIQ 156 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + + ++ + + + D ++N + Sbjct: 157 RVLSGE----EVISCITFPSGDRLKYQDITLIPQLDESGSTIAYFAVIKDITDHKLNDDE 212 Query: 447 MEIEVMQLCS-------------------------ILEATSDGIAIINREGIILSTNRAV 481 + M+L I+ + SD I +INRE ++ N A Sbjct: 213 LRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDPIFVINREHRLVLVNAAF 272 Query: 482 SKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +L P ED+L + + E+ + +E+ + S + Sbjct: 273 CRLMSLPKEDLLGEEVHDFCFSREMADDHWQRNEEVFNSRRETVVEE--IHSYSPGAPAT 330 Query: 541 LRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + I + S + DI++ K+ + ++ + E+ Sbjct: 331 VLIKRIPIIDSDGKWLIVGIIRDITDIKKAQERIRFQADLLEQ 373 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 51/484 (10%), Positives = 127/484 (26%), Gaps = 61/484 (12%) Query: 8 SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKEN---PCHDSF---EQSNFTDQNQES 61 SN E+IL + +K D+ + + +N P ++ + Q+ E Sbjct: 33 SNSEEILYDPLRQ-----AKAVFDSLLANDSANAQNNESPLGLQPHLKDEKPKSFQSAEQ 87 Query: 62 VSNTNYLDSENTFVFDPIPRTVRFTW-NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 N + + R + F +I + +++ +G + +M+G + D Sbjct: 88 DPEENTMAPASD------NRPLPFMLVHISSDQRYLFVNQSYANWLGLDSSEMVGRHISD 141 Query: 121 VSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 + + I +L + +P Y I L +P + + Sbjct: 142 ILPEEIYQTYLPLIQRVLSGEEVIS--CITFPSGDRLKYQDITL--IPQLDESGSTIAY- 196 Query: 180 GFGIVHVNRVDNDPRALGK-------------------------RLDKKFSHLHEIKKGH 214 F ++ + R + Sbjct: 197 -FAVIKDITDHKLNDDELRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDP 255 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 V ++ + + L K L E + +EE +E Sbjct: 256 IFVINREHRLVLVNAAFCRLMSLPKEDLLGEEVHDFCFSREMADDHWQRNEEVFNSRRET 315 Query: 275 FHTINLNQYTKKQYFGTLQN----NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + ++ +S + + + E + +++ Sbjct: 316 VVEEIHSYSPGAPATVLIKRIPIIDSDGKWLIVGIIRDITDIKKAQERIRFQADLLEQVH 375 Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 GN+ Y N S L +KS + + + P+ + + + Sbjct: 376 NTVIATDLEGNIIYWNKSAETLLGWKSEEAMGKNIAET---VVPEWGLDKMNRVISDLIK 432 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 DR +++ + E + G+ + + + + ++ Sbjct: 433 DRGNWDGEFYFK---KKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDLTERKHIEEALKK 489 Query: 450 EVMQ 453 + Sbjct: 490 AKRE 493 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 6/142 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDP-NNHIGDLLKRQNTWYGK 146 D G + ++ +G + + +G + + +D N I DL+K + W G+ Sbjct: 381 TDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEWGLDKMNRVISDLIKDRGNWDGE 440 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ VP I E G G + K+ ++ Sbjct: 441 FYFKKKDGST--VPFHQCFSSIRDGRGELIGLVGVAV--DLTERKHIEEALKKAKREAEE 496 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228 +K + + Sbjct: 497 AARVKSDFLANMSHEIRTPMNA 518 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 70/234 (29%), Gaps = 26/234 (11%) Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA- 460 ++ + ++ A + ++ + + E + + Sbjct: 42 PLRQAKAVFDSLLANDSANAQNNESPLGLQPHLKDEKPKSFQSAEQDPEENTMAPASDNR 101 Query: 461 -TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 + I+ + L N++ + G +++ + + L + + +LS Sbjct: 102 PLPFMLVHISSDQRYLFVNQSYANWLGLDSSEMVGRHISDILPEEIYQTYLPLIQRVLSG 161 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + G + + ++L + + + Y + DI++ K ++L +K E Sbjct: 162 EEVISCITFPSGDRLKYQDITLIPQLDESGSTIAYFAVIKDITDHKLNDDELRRSKMELE 221 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + + ++ L R +Y + I S Sbjct: 222 ERVAWRTKEL------------------------ELANSALERSRDYLDMIINS 251 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 68/248 (27%), Gaps = 14/248 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 + I+ L ++ + + ++G + D S + D ++ + Sbjct: 256 IFVINREHRLVLVNAAFCRLMSLPKEDLLGEEVHDFCFSREMADDHWQRNEEVFNSRRET 315 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + G + + +PI + + + GI+ + + Sbjct: 316 VVEEIHSYSPG--APATVLIKRIPIIDSDGK---WLIVGIIRDITDIKKAQERIRFQADL 370 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKY 259 +H + + E I+ +S L K++ + Sbjct: 371 LEQVHNT---VIATDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEWGLDKMNRVI 427 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L + + + F + + Q F ++++ E + + + +E Sbjct: 428 SDLIKDRGNWDGEFYFKKKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDLTERKHIEEAL 487 Query: 320 NLTPETVD 327 + Sbjct: 488 KKAKREAE 495 >gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1082 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 134/768 (17%), Positives = 268/768 (34%), Gaps = 65/768 (8%) Query: 98 ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIE 153 S + +G ++ + + I ++ + + + L + Sbjct: 68 FSPRWKEMLGYGEQELPNHIDTWKQLLHPQDRERVMKILGDHFARKTDHYSAEFRLKCQD 127 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---EI 210 G Y I ++ R G + + L L L + Sbjct: 128 GN--YKWILSRGKALWDATGTPV--RMAGSHTDISDRKNEQILLTSLIDCIPDLVFCKDS 183 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSL 269 K + + + ++ E ++ +EE Sbjct: 184 KGVYKMCNNAFETFAGRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWIT 243 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + ++ + G L S + + E + L + Sbjct: 244 YPNGNRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKQQAERDALLSNIARQL 303 Query: 330 -------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + F + S G + S+++ + + + + N Sbjct: 304 IDQDLTTAVNFILASLGKFTKCDRSYIIRYFPEEKAWSMLHEWCNEYTPSTIHDSQNISL 363 Query: 383 PVM--------------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-------- 420 V + R D A+A Q + +L + + Sbjct: 364 EVFPWFSQQLIEGKSICINRLDDFPPEATAEQEAYQNSLSPNLLVVPMMTGGQTVGYLGI 423 Query: 421 ---------ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + I + + + IL+ ++ I I+ + Sbjct: 424 DTNRYKKWKKEDVNLLKLVGELMAIAEARAIAEEAQKESQARFAGILDNANEAIISIDEQ 483 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKI 528 I N A ++FGY E++L + F + + ++ + + Sbjct: 484 QNITLFNHAAEEIFGYTSEEVLGRAFNLLIPSRFTDAHYQHIKTFQHTAETARQMGGRRP 543 Query: 529 TLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 G K+ + I KL + ++ + DI+E KQ + L AK+ A+ + KS Sbjct: 544 VFGQRKDGTEFLAEVSISKIKLRGKTIFTAIIRDITERKQAEEALKQAKEQADAANRAKS 603 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHE+RTPL AI+GF++V++ + + + I RSG +L+++ND+L+ Sbjct: 604 EFLASMSHELRTPLNAILGFTQVMQRDHSLKG---EHRQNLDIIGRSGEHLLELINDILE 660 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 ++KIE+G+ + L + S++ L A EK + + ++P+ I D ++ Sbjct: 661 MTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLR 720 Query: 706 QIALNILSNAIHFTPSGGQI-IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760 Q+ +N+L NAI FT GG I I T H++++ + + DTG G+ E+ + + F Sbjct: 721 QVLINLLGNAIKFTQEGGVILRIKTNHSTDQNPTIILTFEIEDTGPGIAAEEVNQLFEAF 780 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GQ + EGTGLGLP+++ V+ G+ + S +G+L Sbjct: 781 GQTETGRNSN-EGTGLGLPISRKFVELMGGEITVSSILGRGSLFTFTI 827 Score = 91.6 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 75/285 (26%), Gaps = 22/285 (7%) Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E V + ++ + +P + + Y + LL Sbjct: 38 LRESEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLGYGEQELPNHIDTWKQLLHPQ 97 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 I R A ++ N + + + G Sbjct: 98 DRERVMKILGDHFARKTDHYSA----EFRLKCQDGNYKWILSRGKALWDATGTPVRMAGS 153 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + + L S+++ D + + +G+ N A G +DI+ Sbjct: 154 HTDISDRKNEQI-------LLTSLIDCIPDLVFCKDSKGVYKMCNNAFETFAGRDRKDII 206 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K ++ E+ +L+ P Sbjct: 207 GKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYPNGNRRLVDTLKTPFCCPEGKL 266 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 DI++ KQ++ A K+ + + L+ ++ ++ Sbjct: 267 MGTIGISRDITDRKQKEE--------AIKQQAERDALLSNIARQL 303 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 23/250 (9%), Positives = 65/250 (26%), Gaps = 25/250 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----------NHIGDLLK 138 ID + + + G + +++G + D + + Sbjct: 480 IDEQQNITLFNHAAEEIFGYTSEEVLGRAFNLLIPSRFTDAHYQHIKTFQHTAETARQMG 539 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + +G+ +GT + ++ + + + I+ K Sbjct: 540 GRRPVFGQ----RKDGTEFLAEVSISKIKLRGKT------IFTAIIRDITERKQAEEALK 589 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + ++ + K + + + ++ + SL + D++ Sbjct: 590 QAKEQADAANRAKSEFLASMSHELRT-PLNAILGFTQVMQRDHSLKGEHRQNLDIIGRSG 648 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 LL + + + I + T Q L L + E Sbjct: 649 EHLL----ELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAEEKNLQLLFEK 704 Query: 319 ENLTPETVDK 328 P+ ++ Sbjct: 705 NPDLPQYIET 714 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 48/158 (30%), Gaps = 7/158 (4%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + + + + +++ T++GI N + + + Sbjct: 11 DRLIQELQAEIIRLKADQKVALTMQETLRESEERWQLVVQGTNEGIWDWNLKTDEMFFSP 70 Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 ++ GY +++ + L + L + + ++ Sbjct: 71 RWKEMLGYGEQELPNHIDTWKQLLHPQDRERVMKILGDHFARKTDH-YSAEFRLKCQDGN 129 Query: 538 LLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKL 571 + K L ++ + M DIS+ K E+ L Sbjct: 130 YKWILSRGKALWDATGTPVRMAGSHTDISDRKNEQILL 167 >gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1067 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 137/779 (17%), Positives = 274/779 (35%), Gaps = 82/779 (10%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 +S + +G ++ + ++ + ++L + GKT + +E Sbjct: 66 LFLSPRWKEMLGYQDDELENHFKTWRKLLHPKDVE---RVMEVLH--EHFEGKTAYYVVE 120 Query: 154 GTNL-----YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 Y I ++ + R G ++L + L L Sbjct: 121 FRLQCKDGSYKWILSRGQALWDATGKPV--RMAGSHTDISDRKARQSLLRSLIDCIPDLI 178 Query: 209 ---EIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + + ++ + + S H D L ++ + Sbjct: 179 FYKDAQGIYRVCNRAFAEFLGRKDKEILGKSDFDLFSRKIASQIHHYDTLLMQQNNSHRN 238 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT-- 322 EE + + ++ G + S + + + ++L Sbjct: 239 EEWVAYKNGNRRLLDTFTTPVLGSDGEVLGIIGISRDITDRKQKEQALEQQAKRDHLLSC 298 Query: 323 --PETVDK-CPIPF--FVYSHGN---------LFYANPSFLLLTKYK--------SVDDI 360 +D+ + + G + +++ Y+ V ++ Sbjct: 299 ISRPLIDQDLNTAINFILQALGECTGSEHAYIIRFSDCQASWSMSYEWCNPHNPKIVSEL 358 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-------------NR 407 E S + K V + R A+A + Sbjct: 359 EKCQNQSVDTFPWFTKQLLSGKTVKINRLQDLPSEATAEKEALLKSLTPCVLIVPMINAG 418 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKRKMEIEVMQLCSILEATSD 463 + + E++ + E + +E + IL+ ++ Sbjct: 419 KTVGYLGLDAGSHKTWTKEDVHLLKLIGEFIAIAESRHEAQAALEESQARFAGILDNANE 478 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLD 520 I I+ I N A K FGY ++++ + F + L + + Y+ + Sbjct: 479 AIISIDENQQITLFNHAAEKTFGYQAQEVIGQSFNLLLPSDYGEIHQQYINTFAKASQTA 538 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIA 578 + G ++ + I KL + DI+E KQ + L AK+ A Sbjct: 539 KQMGGRNPVFGRRQDGTAFLAEVSISKLVQRGKILFTAIVRDITERKQAEEALKQAKEAA 598 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + KS+FLA +SHE+RTPL AI+GF++V+ I RSG +L Sbjct: 599 DNANRAKSEFLASMSHELRTPLNAILGFTQVLARN---SALKEEEKTNLEIISRSGEHLL 655 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 D++ND+L++SKIE+G+ + L + +++L A K + + A+++P+ I Sbjct: 656 DLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAEAKGLQLIFDSASDVPQYI 715 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----------ILRVRDTGVG 747 D ++Q+ +N++ NAI FT GG ++ S +V V DTG G Sbjct: 716 QTDEGKLRQVLINLIGNAIKFTDEGG---VTLRVKSGGKVPLESPKMATITFEVEDTGPG 772 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + E++ + FGQ ++ +GTGLGLP++K V+ G+ + S P G+L Sbjct: 773 IALDEIDNLFEAFGQTETGRKSN-QGTGLGLPISKKFVELMGGEIRVSSVPGNGSLFAF 830 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 13/145 (8%) Query: 440 TRINKRKME------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI- 492 + +R +E + +L +DGI N + L + ++ GY +++ Sbjct: 25 RQEQQRSLEIQEKFTESEERWQLVLRGNNDGIWDWNLKTNELFLSPRWKEMLGYQDDELE 84 Query: 493 -LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 K + L + L E K+ + + L + Sbjct: 85 NHFKTWRKLLHPKDVERVMEVLHEHFE-GKTAYYVVEFRLQCKDGSYKWILSRGQALWDA 143 Query: 552 SC----YSLTMHDISEWKQEKNKLS 572 + + + DIS+ K ++ L Sbjct: 144 TGKPVRMAGSHTDISDRKARQSLLR 168 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 5/124 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTW 143 + DA G + + + +G +++G D+ +H LL ++ N+ Sbjct: 177 LIFYKDAQGIYRVCNRAFAEFLGRKDKEILGKSDFDLFSRKIASQIHHYDTLLMQQNNSH 236 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + G +D P+ + E G GI ++ K+ Sbjct: 237 RNEEWVAYKNGN--RRLLDTFTTPVLGSDGEVLGI--IGISRDITDRKQKEQALEQQAKR 292 Query: 204 FSHL 207 L Sbjct: 293 DHLL 296 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 69/249 (27%), Gaps = 27/249 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------IDPNNHIGDLLK 138 ID + + + KT G A ++IG + + + + Sbjct: 483 IDENQQITLFNHAAEKTFGYQAQEVIGQSFNLLLPSDYGEIHQQYINTFAKASQTAKQMG 542 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALG 197 +N +G +GT + ++ L G F IV Sbjct: 543 GRNPVFG----RRQDGTAFLAEVSISKLVQR-------GKILFTAIVRDITERKQAEEAL 591 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 K+ + + + K + + + ++ + S+L E +++ Sbjct: 592 KQAKEAADNANRAKSEFLASMSHELRT-PLNAILGFTQVLARNSALKEEEKTNLEIISRS 650 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 LL + + + I + T Q L + L R + Sbjct: 651 GEHLLD----LINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAEAKGLQLIFD 706 Query: 318 GENLTPETV 326 + P+ + Sbjct: 707 SASDVPQYI 715 >gi|298248593|ref|ZP_06972398.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551252|gb|EFH85118.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 983 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 105/739 (14%), Positives = 231/739 (31%), Gaps = 41/739 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W + GY+ ++ G + G + + T + Sbjct: 267 LVWTMRPDGYIDYYNQRWLDYTGLSTEQAQGDGWIQCLHPDDQQRIRDAWQMSRETGTPF 326 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 T Y A+P+ + + FG K + Sbjct: 327 ETEQRLRHGTTGAYHWFLARAMPMRDETGQII--KWFGTCTDIEEQKQAEQQLKESQESL 384 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 L E V + + + L + + Sbjct: 385 RVLAETVPQMVWVARPNGLHEYTNQRWQDYTGSTLEHMQNGRWAHLQFIHPEDRQRHRAH 444 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 L + E+ + +++++ + ++ + Sbjct: 445 WQHALDTGTMFEHEERIRNGQTGEYRWFLARGMPVRDDAGQIVKWFGTSTDIDEQKQAER 504 Query: 318 GENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E + P +V G Y N + T +D I+ + Sbjct: 505 QLKESRESLRVLAETVPQLVWVKRPDGQHEYTNQRWRDYTGLT-LDQIQSDRWVHLQFIH 563 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P+ + + R+ T N+ + + G Sbjct: 564 PEDQEGHR---ASFQRALDTGAMFEYEQRLRHAQTGEYRWFLTRAMPMRNEAGQIIKWFG 620 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + D + + + + ++ + GI + + I+ N ++ GY ED+ Sbjct: 621 TNTDIEDQKRIEEALRQSQERASVLMNSNIIGIFV-DEGEQIVDANDTFLRMTGYTREDL 679 Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 R + + E+ + EK + + + + + Sbjct: 680 HAGRLNWMHMTPPEYLAQTRQAHQELAAQQSLTPYEKEYVCQDGSRLNVLVCGDVLQHHP 739 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + D S K+ + + K DF++ SHE++TPLT + ++ + Sbjct: 740 FQGIAFVL-DNSAPKELEQR--------------KDDFISMASHELKTPLTTLKMQTQ-L 783 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +R + + ++ + +V +LLD+SKI++G++ E V+LD + E Sbjct: 784 VRKRLERQAHHEAATALSKVEGPVKQLERLVGELLDVSKIQAGRLEYIRETVNLDALLHE 843 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +Q + I++R ++ D + QI N+LSNAI ++P + + Sbjct: 844 VADTMQQISTTHTIVVR---GATSCTLVGDKDRLGQIFTNLLSNAIKYSPGAETVEMDLE 900 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V +RV+D G+G+ + +K + F ++ +Q G G+GL + +V + G Sbjct: 901 ASEDA-VTIRVQDHGLGIPREQRDKIFERFYRVAGPRQRAIPGLGMGLYIVAEIVMGHGG 959 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S KG+ + P Sbjct: 960 TITVDSAVGKGSTFMVTLP 978 Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats. Identities = 49/515 (9%), Positives = 132/515 (25%), Gaps = 30/515 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + +D + + G +++G L + L + + + Sbjct: 29 LFVVDDAATIVYANASAQTLTGATREELLGKPLWRGAPQLGSTSLYQAVQQATQTREP-T 87 Query: 145 GKTTLWPIEGTNLYVPI--DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 P+ L V + + L + + + R + R+ D LD Sbjct: 88 NVEYRSPVTQRWLRVQLAPTVGGLMVQAHQGRVAARREAPVPQDERLSIDD------LDG 141 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 S + + +E + + Q + + ++ + + + Sbjct: 142 LLSRIGVLTPKGIVLEINEDPLAHAQIRREEV-IGQPLAEARWWSFYPASQEQLRAAIAR 200 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S ++ + H ++ + + + + Sbjct: 201 ASRGETVRFETVIHPREGLDRHLDVAITPHRDADRHIAYLVLAGIDITERKRAEAE---L 257 Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D P + G + Y N +L T + + G + L + Sbjct: 258 HALIDTIPQLVWTMRPDGYIDYYNQRWLDYTGLSTEQA-QGDGWIQCLHPDDQ---QRIR 313 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R T RL ++ + + G + + + Sbjct: 314 DAWQMSRETGTPFETEQRLR--HGTTGAYHWFLARAMPMRDETGQIIKWFGTCTDIEEQK 371 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500 +++++ L + E + + G+ TN+ G +E + + Sbjct: 372 QAEQQLKESQESLRVLAETVPQMVWVARPNGLHEYTNQRWQDYTGSTLEHMQNGRWAHLQ 431 Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----Y 554 + + L E + + + + + Sbjct: 432 FIHPEDRQRHRAHWQHALDTGT--MFEHEERIRNGQTGEYRWFLARGMPVRDDAGQIVKW 489 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T DI E KQ + +L +++ + + Sbjct: 490 FGTSTDIDEQKQAERQLKESRESLRVLAETVPQLV 524 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 38/407 (9%), Positives = 98/407 (24%), Gaps = 20/407 (4%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 R L + + E G V + I + L + L + Sbjct: 3 DTPQIRRLTPASSETLLTILETLPGALFVVDDAATIVYANASAQTLTGATREELLGKPLW 62 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 L + + + E + + Q + + R Sbjct: 63 RGAPQLGSTSLYQAVQQATQTREPTNVEYRSPVTQRWLRVQLAPTVG--GLMVQAHQGRV 120 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 A + E L+ + +D + G + N L + + + I Sbjct: 121 AARREAPVPQDERLSIDDLDGLLSRIGVLTPKGIVLEINEDPLAHAQIRREEVIGQPL-A 179 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + ++ + S + +H + + + + Sbjct: 180 EARWWSFYPASQEQLRAAIARASRGETVRFETVIHPREGLDRH---LDVAITPHRDADRH 236 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + + + L ++++ + + +G I N+ G Sbjct: 237 IAYLVLAGIDITERKRAEAE-------LHALIDTIPQLVWTMRPDGYIDYYNQRWLDYTG 289 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 E + L + + E+ T Sbjct: 290 LSTEQAQGDGWIQCLHPDDQQRIRDAWQMSRETGTPFETEQRLRHGT-TGAYHWFLARAM 348 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + T DI E KQ + +L +++ + + Sbjct: 349 PMRDETGQIIKWFGTCTDIEEQKQAEQQLKESQESLRVLAETVPQMV 395 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 22/274 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + P + ++ P F V + YAN S LT + + Sbjct: 1 MSDTPQIRRLTPASSETLLTILETLPGALFVVDDAATIVYANASAQTLTGATREELLGKP 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P+L + + V R R Q + Sbjct: 61 LWRGA----PQLGSTSLYQAVQQATQTREPTNVEYRSPVTQR------WLRVQLAPTVGG 110 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 Q + ++ I+ L+ I ++ +GI+L N Sbjct: 111 LMVQAHQGRVAARREAPVPQDERLSIDD------LDGLLSRIGVLTPKGIVLEINEDPLA 164 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542 E+++ +P + L ++ R +T+ T+ +E L Sbjct: 165 HAQIRREEVIGQPLAEARWWSFYPASQEQLRAAIARASRGETVRFETVIHPREGLDRHLD 224 Query: 543 IIIKKLPFSSCYSLTMH----DISEWKQEKNKLS 572 + I + + + DI+E K+ + +L Sbjct: 225 VAITPHRDADRHIAYLVLAGIDITERKRAEAELH 258 >gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1186 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 120/770 (15%), Positives = 250/770 (32%), Gaps = 71/770 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + +E + G ++I + + + + +KR + + + Sbjct: 292 DLEGNILDANESALEMFGYTREELIRLHPSSLVHPEEVQQVREEFEDIKRNQSRFSEHRC 351 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + V R R S G++ + + ++ + E Sbjct: 352 LRSDGREIMVIT---------RGRLVSENMIQGVLRDVTRERQQEKALRESEEYIRTIME 402 Query: 210 IKKGHSS---VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ D+ + + + ++ + + Sbjct: 403 VLPDIVIKTNLQGVCLDVLGDFQAKLYRPKEEVLGRYIPDVVPEEVGTRFMQGVNNALTT 462 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L E I+ + + L + N A +E E+ + Sbjct: 463 GDLQMVEYELEIDSRTFYFESRIMPLNEEEVIALIRDITENR-RALAALEESESRYRQLF 521 Query: 327 DKCPIPFFVYSHG-----------------------------------NLFYANPSFLLL 351 + P V + N + L Sbjct: 522 QESPASMLVEDFSQVQKRLGEIKNQADGELDSFLKENPQFVQEMAELVRIVDVNQTALKQ 581 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 S+++ G++T+ + + RL + Sbjct: 582 FHAASLEEFTR--GIATVFARDSWQ--EFMGELAAVFHGEKSFFTEKRLQNL---NGEIR 634 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + + + + + + M L +L+ D +++ + Sbjct: 635 NVQLKWSVMPGCEQDFSRVLVCIVDITGLKSIEEDLRHKNMLLNGVLDNMPDFMSVKLPD 694 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 ++ NR +L G ++ K + Q P L + + Sbjct: 695 LTVVRYNRTGYELLGMDENEVQGKKCYELMNQEFPCQPCATLDALKRGGQA---DHELYF 751 Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 E + S R + DI++ K+ + +L A + AE + KS+FL Sbjct: 752 PQFE-RYFSCRANPILNEEGRVEYVVELLRDITQRKESEAELQMAWEKAEAANKAKSEFL 810 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ I+G ++++ + + S + ++ D+LD+S+ Sbjct: 811 ANMSHEIRTPINGIMGGLQLLEATSL----DHEQKQLVEMGIASARRLTRLLTDILDLSR 866 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 IE+GKM + +D + L A EK + I + +P IL D ++QI Sbjct: 867 IEAGKMEIRKADFEVDRLCTSIEDLFAASAAEKNVRISCTLDPRLPPILAGDDARIQQIL 926 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 LN++ NA+ FT + + + V++ V D+G+G+++ +L + PF Q Sbjct: 927 LNLVGNALKFTHDD-TVELHWHLLRRQGNELRVLISVADSGLGISDEKLGEIFNPFVQAD 985 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + EG GLGL + +V G + STP +G+ + PL S Sbjct: 986 GAFTRNFEGAGLGLSIVVRLVQMMGGNISVESTPGEGSTFYVSLPLEAGS 1035 Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats. Identities = 63/514 (12%), Positives = 145/514 (28%), Gaps = 42/514 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI-----GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 +D G L + L + +G + I G +D + +L+ N Sbjct: 34 VDPGGMLLSANPALAQILGYSDPQDILDKTGGTAWQSFADARDWQG---LYRMLEADNEV 90 Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + L + L+V I A I RGF V +R ++ Sbjct: 91 ANFECRLLCRDNNPLWVSITAGA--IRDDTGRLMYIRGF--VTDISERKLAENALRRSEE 146 Query: 203 KFSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 ++ L E E + +++ +++ + + Sbjct: 147 RYRMLSESTNDFIFSCVEGQTGHNLEWLAGAVEKITGYSVEDILANQCWSFLVHPEDRYL 206 Query: 257 EKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----L 311 + + E E + + + + + S + + Sbjct: 207 FREHITECEPGQTKECELRILRRDGQTCWLQVASSCFLEDERGSKKVYGACRDITGKKTA 266 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E E +K F++ GN+ AN S L + Y + I + L Sbjct: 267 EKALQESEFRYRNLFEKSTEGVFLHDLEGNILDANESALEMFGYTREELIRLHPSS---L 323 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P+ + + R+ + ++ + + +T + Sbjct: 324 VHPEEVQQVREEFEDIKRNQSRF----SEHRCLRSDGREIMVIT------RGRLVSENMI 373 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G+ + R ++ + + +I+E D + N +G+ L P E Sbjct: 374 QGVLRDVTRERQQEKALRESEEYIRTIMEVLPDIVIKTNLQGVCLDVLGDFQAKLYRPKE 433 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++L + + + + + L+ Q +E + + I L Sbjct: 434 EVLGRYIPDVVPEEVGTRFMQGVNNALTTGDLQMVEYELEI---DSRTFYFESRIMPLNE 490 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DI+E ++ L ++ + Sbjct: 491 EE-VIALIRDITENRRALAALEESESRYRQLFQE 523 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTE 515 I + GI ++ G++LS N A++++ GY +DIL K + + L Sbjct: 23 IFMSAPIGILTVDPGGMLLSANPALAQILGYSDPQDILDKTGGTAWQSFADARDWQGLYR 82 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKL 571 +L D + ++ L + I + + + + DISE K +N L Sbjct: 83 MLEADN-EVANFECRLLCRDNNPLWVSITAGAIRDDTGRLMYIRGFVTDISERKLAENAL 141 Query: 572 SHAKKIAEKESSHKSDFL 589 +++ S +DF+ Sbjct: 142 RRSEERYRMLSESTNDFI 159 >gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1308 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 131/772 (16%), Positives = 261/772 (33%), Gaps = 77/772 (9%) Query: 96 KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 +S + + + G ++ D +N + L + + W + Sbjct: 317 VILSPQGERLLNLKPGSFPGTYEAFVNLLHGDDFDALSNSLQVALLKASGWQMDHKILDP 376 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-------------------- 192 G+ + I +Y + E + GI+ Sbjct: 377 NGS--WRWITSLGKFLYDKTGEPV--QMIGIIKDITHRKQTEFNLQKLNETLEKRVTRRT 432 Query: 193 --------------------PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP- 231 AL K + L SV+ ++ I Q Sbjct: 433 AALKTINNQLKQQLLKCELIEEALKKSQARLSGILKIASDAIVSVDHQQKIILFNQEAEK 492 Query: 232 -PHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286 +K + + LK ++ + + + ++ + + Sbjct: 493 VFGYSVKEVLGKPLSLLLPEKFQLKHHQWVNNFAQSGTLKRPMGKRLEIWGRRQDASEFP 552 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN 345 + S E N ++ G N Sbjct: 553 AEASISRLEIGGEIILTVILQDISERKQAQEQLNQINCALENAVEGISRLDTQGRYLMVN 612 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 ++ L Y+ + I + P D + + T A + ++ Sbjct: 613 KAYAALLGYQPQEIIGKE---WQITIHPSEQDKMKLAYQTML----TQGKVEAEVKGVRK 665 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + +Q + + + + + ++ + G Sbjct: 666 DGSVFYKQ-VTMISAYDQQKQFIGHYCFAKDITERKQADEILKKYAQDFTDLYNHAPCGY 724 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 ++ G+++ N GY E +L K F L + V + + Sbjct: 725 HSLDENGLLVQINDTELNWLGYTREQLLGKVKFYELLTPESREVFSQNFERFKQRGWVKA 784 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEK 580 LE L ++ + + + S L DI++ KQ + +L A+K A Sbjct: 785 LEFELL--RANGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQKAQKEAIA 842 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHE+RTPL AI+GF++++ P ++E I+RSG +L + Sbjct: 843 ANRAKSIFLANMSHELRTPLNAILGFTQLLGRDHC---LRPEHLERLQIINRSGEHLLGL 899 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699 ++D+LD+SKIE+GK+ L + ++Q A + + + + ++P+ I Sbjct: 900 IDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQPKAKTRGLRLIIEKSFDLPQYIKT 959 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSN--EEVILRVRDTGVGMTNYELEKA 756 D + ++Q+ +N+L+NAI FT G I + N + ++ V DTGVGM ++++ Sbjct: 960 DEKKLRQVLINLLNNAIKFTQEGTVILRVKPKAAENTPQRLVFEVEDTGVGMAPDDIDQL 1019 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q +++ +GTGLGL +++ V G+ + ST KG++ Sbjct: 1020 FKVFVQAEAGKKLN-QGTGLGLAISQKFVQLMGGEIEVKSTLGKGSVFSFEI 1070 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 29/312 (9%), Positives = 77/312 (24%), Gaps = 21/312 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G +++ +G ++IG D + Q + Sbjct: 601 RLDTQGRYLMVNKAYAALLGYQPQEIIGKEWQITIHPSEQDKMKLAYQTMLTQGKVEAEV 660 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ Y + + + Y + ++F G F + K+ + F+ L Sbjct: 661 KGVRKDGSVFYKQVTM--ISAYDQQKQFIGHYCFA--KDITERKQADEILKKYAQDFTDL 716 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + E + + + + Y + + Sbjct: 717 YNHAPCGYHSLDENGLLVQINDTELNWLGYTREQLLGKVKFYELLTPESREVFSQNFERF 776 Query: 265 EESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ + + N ++++ S + + Sbjct: 777 KQRGWVKALEFELLRANGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQKA 836 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + ++F AN S L T + G + LL ++ Sbjct: 837 QK------EAIAANRAKSIFLANMSHELRTP------LNAILGFTQLLGRDHCLRPEHLE 884 Query: 383 PVMLYRSDRTCI 394 + + + Sbjct: 885 RLQIINRSGEHL 896 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 38/442 (8%), Positives = 112/442 (25%), Gaps = 52/442 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKT 147 +D + ++E K G +++G L + + + + + + Sbjct: 477 VDHQQKIILFNQEAEKVFGYSVKEVLGKPLSLLLPEKFQLKHHQWVNNFAQSGTLKRPMG 536 Query: 148 TLWPIEGTNL---YVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203 I G P + + + E G ++ + L++ Sbjct: 537 KRLEIWGRRQDASEFPAEASISRL-----EIGGEIILTVILQDISERKQAQEQ---LNQI 588 Query: 204 FSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYY-AHKDDVLKTEKYPL 261 L +G S ++ + Y + ++ ++ H + K + Sbjct: 589 NCALENAVEGISRLDTQGRYLMVNKAYAALLGYQPQEIIGKEWQITIHPSEQDKMKLAYQ 648 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + + + + + K+ + + K+ + + DE Sbjct: 649 TMLTQGKVEAEVKGVRKDGSVFYKQVTMISAYDQQKQFIGHYCFAKDITERKQADEILKK 708 Query: 322 TP----ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + P + + +G L N + L Y + L + Sbjct: 709 YAQDFTDLYNHAPCGYHSLDENGLLVQINDTELNWLGYTREQLLGKVKFYELLTPESREV 768 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + A + + + + + + Sbjct: 769 FSQNFERFKQR------GWVKALEFELLRANGTVMPVMLNATAVKDSQGNYLISRSTIFD 822 Query: 437 DVDTRINKRKMEIEV------------------MQLCSILEATSDGIAIINREG------ 472 + + +++ +L + L A ++ R+ Sbjct: 823 ITKRKQAELELQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDHCLRPEH 882 Query: 473 --IILSTNRAVSKLFGYPVEDI 492 + NR+ L G + + Sbjct: 883 LERLQIINRSGEHLLGLIDDIL 904 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 65/215 (30%), Gaps = 19/215 (8%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILR- 494 + D + ++ + Q +EA + G + G ++ + +L Sbjct: 279 ESDRTLVQKALNQSQQQFQQAVEAANLGTWHWDVVTGKVIL-SPQGERLLNLKPGSFPGT 337 Query: 495 -KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + F L + +++ L L ++ L + + K L + Sbjct: 338 YEAFVNLLHGDDFDALSNSLQVALLKASGWQMDHKIL--DPNGSWRWITSLGKFLYDKTG 395 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DI+ KQ + L + EK + ++ L ++++++ L Sbjct: 396 EPVQMIGIIKDITHRKQTEFNLQKLNETLEKRVTRRTAALKTINNQLKQQL-----LKCE 450 Query: 610 IKNQRFGPLGNPRYIEYANYIDR---SGNLVLDIV 641 + + R S + I+ Sbjct: 451 LIEEAL-KKSQARLSGILKIASDAIVSVDHQQKII 484 >gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 827 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 117/582 (20%), Positives = 232/582 (39%), Gaps = 34/582 (5%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSA 313 + + + E Q + N + + Sbjct: 96 AAQVREVAKAHRAEFTHEYPCNSPTEQRWFRLRAAPYIWNNRRVVVIAHDNITPQKMAEM 155 Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E ++ + HG + NP+ + Y + + +S+L+ + Sbjct: 156 QARKNELALRAVLESAVDSIISIDEHGIITSYNPAAERMFGYGPKELLGCN--VSSLMPS 213 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P ++ L I + + + G Sbjct: 214 PDRERHDGYLRRYLATGIPRIIGFGREATGQRKDGSTF---PIDLSVGEVLYEGRRAFTG 270 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVED 491 I + + + + + + Q ++L A S+ I + G+I + NR ++ GY ++ Sbjct: 271 IVRDISERKATEHALATSLKQREALLSAASEVSIIATDMHGVITTFNRGAEQMLGYSADE 330 Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKITLGSTKEEKL 538 ++ P V L + E+ + + ++ Sbjct: 331 MVGVASPAVVHLHSEVLARSRELTKELGYPVEGFRTFVELAERDGFEHREWTYIRRDGSQ 390 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L + +++ + Y D++EWKQ + +L AK AE + KS+FLA +SH Sbjct: 391 LLVNLVVTCVRDIDGQVIGYLGVAVDVTEWKQSERELKLAKIAAEAANHAKSEFLANMSH 450 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTP+TAI+GF +++ NP+ I+ A I R+G ++ ++ND+LD+SKIE+G+ Sbjct: 451 ELRTPMTAILGFVDIVAENVS---SNPQLIDAAATIKRNGEHLMGLLNDILDLSKIEAGR 507 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 + + ++ ++ I L+++ ++ K + + F IP I D ++QI +N++ Sbjct: 508 LEVQKHSCNVRALTADVIQLMRVRSDAKGLELSIEFQGAIPETIETDSTRLRQILINLIG 567 Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI FT +G QI++ + +RDTG+G+T ++ K +PF Q+ S + Sbjct: 568 NAIKFTENGRVQILVRLERRGTPMLEFEIRDTGIGITPEQMTKLFRPFTQVDTSLTRKFG 627 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---PLY 811 GTGLGL ++K + + G + S +G+ + PL Sbjct: 628 GTGLGLTISKRLAEILGGTITVSSKAGEGSSFLLRIAAGPLA 669 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 25/269 (9%), Positives = 66/269 (24%), Gaps = 31/269 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNT----W 143 ID HG + + + G +++G + + + + ++ L + Sbjct: 178 IDEHGIITSYNPAAERMFGYGPKELLGCNVSSLMPSPDRERHDGYLRRYLATGIPRIIGF 237 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +G+ + + + +Y R F+G IV K+ Sbjct: 238 GREATGQRKDGSTFPIDLSV-GEVLYEGRRAFTG-----IVRDISERKATEHALATSLKQ 291 Query: 204 FSHLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L S + + + + + V + H + Sbjct: 292 REALLSAASEVSIIATDMHGVITTFNRGAEQMLGYSADEMVGVASPAVVHLHSEVLARSR 351 Query: 260 PLL----------------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 L + + + + +Q +++ + YL Sbjct: 352 ELTKELGYPVEGFRTFVELAERDGFEHREWTYIRRDGSQLLVNLVVTCVRDIDGQVIGYL 411 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + L + Sbjct: 412 GVAVDVTEWKQSERELKLAKIAAEAANHA 440 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 12/154 (7%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + R +E + + S+L+A S IA+I+ +G++L N+A K P Sbjct: 14 TEPSVVTRALEASLSTVDSLLDALSMHIAVIDSQGVVLGVNQAWRKFGRENGIRATFNPV 73 Query: 498 TVFLEQNTPSV----------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + + + E+ + + S E++ LR Sbjct: 74 GSNYFEICQCAASSGAYEAADVAAQVREVAKAHRAEFTHEYPCNSPTEQRWFRLRAAPY- 132 Query: 548 LPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEK 580 + + + HD I+ K + + + Sbjct: 133 IWNNRRVVVIAHDNITPQKMAEMQARKNELALRA 166 >gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1034 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 114/587 (19%), Positives = 213/587 (36%), Gaps = 20/587 (3%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 P + + L + L + + Sbjct: 43 FPAVLIAAYYGGLGPGLLATAIGAFIANFALTPPHFELSIKSINAAVALPMFLLVGAMMS 102 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349 L + + L + + E + F+ G Y +P++ Sbjct: 103 ALCESLHRTRLRLVAEERARAATAVKDAEARFLHLAENIRDIFWALDPVGRPVYVSPAYE 162 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + + A G P + + R RT R I Sbjct: 163 EVWGRSREELYRSAAGAWLDTVHPDDRSGATEQFDHVRRGARTD-----REFRIVRPDGA 217 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + F ++ G+ + + + + + + E + GIA + Sbjct: 218 VRWVRLRSFPLGDEAGREPRVAGLCEDITERKRAEGNLRESEERFRGTFENAAVGIAHCD 277 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKI 528 EG L N+ + YP E+++ F + + ++ ++R +LEK Sbjct: 278 PEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQFERLMRGEVRSYSLEKR 337 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + K + + ++ P + DISE K+ + +L AK+ AE + K Sbjct: 338 HVCKDGAVKWTVVTVSAQRDPVQGTLHSIGVVEDISERKRLEGELLVAKEAAEAANRAKD 397 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA VSHE+RTP+ AI+G +E++ + + + + +L I+NDLLD Sbjct: 398 EFLANVSHELRTPMNAILGMTELVLETEL----REDQRQCLATVKSAADNLLGILNDLLD 453 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +KIE+GK+ L SL V + + + A+ + + +P ++ D ++ Sbjct: 454 FAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPAVPDALVGDPGRLR 513 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPF 760 Q+ N++ NAI FTP+G ++++ V VRDTG+G+ +L++ F Sbjct: 514 QVLFNLIGNAIKFTPAG-EVVVGVEPADPSDIGGSAVRFTVRDTGIGIKPEKLDRIFHAF 572 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 Q S R GTGLGL ++ +V G + S P +G+ Sbjct: 573 EQEDTSTTRRYGGTGLGLTISGRLVALMGGAIGVESEPGRGSTFAFT 619 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 24/254 (9%), Positives = 60/254 (23%), Gaps = 12/254 (4%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDPNNHIGDLLKRQNTW 143 W +D G +S + G ++ D D ++R Sbjct: 146 WALDPVGRPVYVSPAYEEVWGRSREELYRSAAGAWLDTVHPDDRSGATEQFDHVRRGART 205 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G + L + P+ R G+ + +++ Sbjct: 206 DREFRIVRPDG--AVRWVRLRSFPLGDEAGREP--RVAGLCEDITERKRAEGNLRESEER 261 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT-EYYAHKDDVLKTEKY- 259 F E + + + ++ L H DD + Sbjct: 262 FRGTFENAAVGIAHCDPEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQF 321 Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L+ E S ++ + ++ + + + S + Sbjct: 322 ERLMRGEVRSYSLEKRHVCKDGAVKWTVVTVSAQRDPVQGTLHSIGVVEDISERKRLEGE 381 Query: 319 ENLTPETVDKCPIP 332 + E + Sbjct: 382 LLVAKEAAEAANRA 395 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 36/337 (10%), Positives = 85/337 (25%), Gaps = 20/337 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147 D G ++++ + ++IG+ V+ + + L R ++ + Sbjct: 277 DPEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQFERLMRGEVRSYSLEK 336 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + + ++A R+ G+V + Sbjct: 337 RHVCKDGAVKWTVVTVSAQ----RDPVQGTLHSIGVVEDISERKRLEGELLVAKEAAEAA 392 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K + + P + + L + Sbjct: 393 NRAKDEFLANVSHELRT------PMNAILGMTELVLETELREDQRQCLATVKSAADNLLG 446 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 L + DF I + +L+ ++ L+ R H + + P+ + Sbjct: 447 ILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPAVPDALV 506 Query: 328 KCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 P GN P+ ++ + D +I G K Sbjct: 507 GDPGRLRQVLFNLIGNAIKFTPAGEVVVGVEPADPSDIGGSAVRFTVRDTGIGIKPEKLD 566 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 ++ + T + L +T A Sbjct: 567 RIFHAFEQE-----DTSTTRRYGGTGLGLTISGRLVA 598 >gi|222054922|ref|YP_002537284.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221564211|gb|ACM20183.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 756 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 99/741 (13%), Positives = 236/741 (31%), Gaps = 44/741 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA G + ++++ + G A + +G L + + +L R + W+G+ Sbjct: 36 DADGMVDFVNDKFTEITGYEAGETVGRSLWSLQCQETPTCTDLEKFVLTRGD-WHGEMVN 94 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + + +A + R+ SG+ + K + + S Sbjct: 95 RRKDGAPYWESVSIAV--VRDRDGAISGY--VAVKQDVSEGKQTEERLKAREAELSEAQR 150 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEKYPLLTS 264 I + S + D ++ + +Y + L + + Sbjct: 151 IARVGSWTWDAESDTVYWSEQTYRTCGFDQSVAPPSFYGGHGKLFPPEDLARLTQCIDLA 210 Query: 265 EESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 P Q D + ++ + +E Sbjct: 211 LRDGTPYQLDLQMLCPDTPRWITVRGEATRDAEGRIKGLRGSIQDITERKRAEEEIQCQR 270 Query: 324 ETVD----KCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 ++ P + + NP++ L + Sbjct: 271 RLLESVIMNLPAAVLIAVGHDLRIKMINPAYSRLAP--------GKEIIGKTFPEVWPEI 322 Query: 378 NNAIKPVMLYRSDRTCIAA-SARLHTIQWNRE--NSLAMTFIPFEKANQFPENMPQNGIE 434 + H ++ ++ F E Sbjct: 323 PALRDVFLKVLETGEPYEVVDEPYHISRFPGGLLEKRYFSWSLFRVRLPGNEEWGLLNTA 382 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL 493 E + + ++ + + + S E + G+ + + + N A ++ GY + + Sbjct: 383 WETTERKRSEDALRVSEEKFRSFFEHAAVGMGRVRFTDACWIDVNGAFCRMLGYSPDAMK 442 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 P+ + + +L T K+ + R+ + + + Sbjct: 443 ATPWPQITHPEDVDMDLIPFRRMAVGELD-TYSVEKRFIHKDGHHVWARLALSLVRNAEG 501 Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DI++ K+ + + ++ + F SH+++ PL I + + Sbjct: 502 LPDYEIAVIEDITDRKRSEAERERLLSEVQRSNQELQQFAYIASHDLQEPLRMISSYISL 561 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ + G L + + I Y +Y+ + ++ LL+ S+I PV +E+ S Sbjct: 562 LERKYSGQL-DEKAITYLSYVVDGAKRMQKLIEGLLNYSRI---SREARLVPVDTNESFS 617 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A++ ++ E + +P +L D + Q+ N++ N + + G + Sbjct: 618 AAVANLEQRIRESGGDVTND---PLPIVLGDETQLVQLFQNLVGNGLKYRKPGSIPHVHL 674 Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E + V D G+G+ + ++ + F ++ + GTG+GL L K +V+ + Sbjct: 675 SARPAGLEWLFSVSDNGIGIESQHYDRVFQIFQRLH--TKEEYPGTGIGLALCKKIVERH 732 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G+ ++ S P +GT I P Sbjct: 733 GGRIWVESRPGEGTTFYFILP 753 >gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris MCS10] Length = 911 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 127/686 (18%), Positives = 245/686 (35%), Gaps = 65/686 (9%) Query: 176 SGFRGFGIVHVNRVD------NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 G G + ++ +D + + Sbjct: 193 DGTVGAFVARLSTESALPDWGDDRVVALADAQGGMLAIRPRMPSARPGTQLAERF--GLQ 250 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT----- 284 P + T ++ + P+ +E + T Sbjct: 251 PGFIDSLAAGGGGATSDARFGEERVTFAVAPITGTELRVYALGAMRINQDAWYRTISFYG 310 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFY 343 + ++ S ++ E ++ + ++ + Sbjct: 311 LMFIAPIFVALGLCALVFMQMGRLRSTRQQLEDNEQRFRVAIEGARCGVWDWNPEADTVF 370 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 S + + + L L P D ++ M + Sbjct: 371 VTDSLARILGLDAATECTGQQFL-QLFSKP---DRERLRAAMRGAPAGAEVDHEV----- 421 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + + + G+ + + + + ++ +L + LE+ S+ Sbjct: 422 -LAARSPVWLQMRGRILPGGEANHTRIIGVAIDVTERKGAQARVAAAENRLRAALESMSE 480 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 + + ++ NR LF + + + + + + Sbjct: 481 SFVLWDSRQRLVLWNRKFRDLFDFTDGMLK-----PGMSYDAVEQAAARAIKTVHGGSEG 535 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI------ 577 + L DI++ K + L+ + Sbjct: 536 KAAYEIEL--SNGRWLHYSDRPT---ADGGLVSVGADITDLKHHEAALTENESQLRKTVD 590 Query: 578 ----------------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 AE+ + KS+FLA +SHE+RTPL AI GFSE++ + F Sbjct: 591 DVKRSQARIADLAKKYEEEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMF 650 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GPLG+ RY+ Y I SG +L+++ND+LD+SKIE+GKM L EP E V ++I +V Sbjct: 651 GPLGDDRYVGYMKDILSSGRHLLELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIV 710 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A EK++ +R + ++P I D R+ KQ+ +N++SNA+ FTP GG++ + + Sbjct: 711 RGRAEEKQLKLRADVS-DLPEIEVDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLG 769 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V +V DTG+G+ +L + +PF QI + +G+GLGL L+K++++ + G I Sbjct: 770 -VAFQVSDTGIGIAKDDLPRLGRPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSID 828 Query: 796 STPAKGTLIEIIFPLY-DTSHPHDCI 820 S +GT + ++ P+ D P D I Sbjct: 829 SVLGEGTTVSVVLPISQDQPIPRDAI 854 >gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp. R2A130] Length = 1323 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 167/438 (38%), Positives = 254/438 (57%), Gaps = 7/438 (1%) Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + SD +A + E + + + N+ +G P DT Sbjct: 882 RLAARGSDVVEDEVAATTSKNPLSPEVAARDILSLQVEEARQRMNLRGDGETPSTSDTTS 941 Query: 443 NKRKME-----IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 R+ ++ L +IL+ ++DG+ I++ EG++ NR+ LF E I + Sbjct: 942 PTREASPHFTGMQADDLRAILDVSTDGVIIVSNEGVVRDINRSAEALFDVDAEAIAHRSI 1001 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 T L + YL + + + L + +G T + L+ L + + +L S Sbjct: 1002 TRLLAPESHRTALDYLANMGATGVASLLNDGREVVGKTSQGGLVPLFMTVGQLQHSDDCC 1061 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI+ WK+ + +L K AE + K+ FLA++SHEIRTPL AIIGFSE++ +R Sbjct: 1062 AVVRDITHWKKAEEELLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERL 1121 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + N RY Y I+RSG VLD+VNDLLDI+KIE+GKM + F+ V L+ VSE ++++ Sbjct: 1122 GRIDNDRYRGYLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAIL 1181 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q AN RI+IRTS + +P+++AD RS++QI LN++SN+I FT SGGQ+I+ST + + Sbjct: 1182 QAEANADRIIIRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSG 1241 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV+LRVRDTGVGM+ E+E+A++PF Q ++ +GTGLGLPL KA+V+AN F+I Sbjct: 1242 EVVLRVRDTGVGMSASEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIE 1301 Query: 796 STPAKGTLIEIIFPLYDT 813 STP +GTL+EI FP+ Sbjct: 1302 STPDEGTLVEIHFPVQRV 1319 Score = 180 bits (457), Expect = 8e-43, Method: Composition-based stats. Identities = 85/438 (19%), Positives = 154/438 (35%), Gaps = 30/438 (6%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 + P + + + + F F R VRFTW +S Sbjct: 436 AKQPEAEIEDAEPVAASIATDLEPDTEDKEADGFRFASAARPVRFTWATGPDKAFSAVSA 495 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160 EL T+G A + M VS+ L + + I +LL + +TW +T LWP++GT+L VP Sbjct: 496 ELANTVGPRASAIDDMEWSQVSEKLGFENGDVIDELLDKGDTWSNRTVLWPVDGTDLRVP 555 Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 +DLA LP Y R F GF GFGI+ D + D+ + L ++ + E + Sbjct: 556 VDLAGLPSYDTARSFRGFNGFGIIRTADAMVDDTLVEDAEDETDNDLRQLGSDYEGGEND 615 Query: 221 KY----DIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + +I S + P + + L + E S+ + + Sbjct: 616 EANADHEIASNVTAPIGFLKPFSSDTKTDEANEPETSTSDTETTRVLSSDETSNFRQIGE 675 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---------- 324 T N + T + + ++ S P++ +E + + E Sbjct: 676 TLTDNAAKATDDEEAESAADSFVPSAFANRAIAEPNVEPETEEDNSSSAETDSESKAVPK 735 Query: 325 ---------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + + PIP VY L + N F T Y + ++ GG++ L Sbjct: 736 TDRANVDTSILSRLPIPVLVYRDDELLFGNDEFFSTTGYADLPELAERGGVAALF----- 790 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 +D +A + D + L ++ W+ E ++ +T N ++ + Sbjct: 791 ADADAKGTSPIRHRDGHDLNLHGNLQSVPWDSEKAMLLTLRHTPPGNGNSDDRGGDEGGK 850 Query: 436 EDVDTRINKRKMEIEVMQ 453 + + Sbjct: 851 GNGPAPAPSSNDRGSRSE 868 >gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160] Length = 1042 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 123/728 (16%), Positives = 241/728 (33%), Gaps = 42/728 (5%) Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI----EGTNLYVPIDLAALPIY----- 169 +V + + I + K G T + + G V P Sbjct: 104 SEVIVVDDSHADPRIQEFFKTYLMPLGITAMLDVPIHLHGRVDGVLRLAQLGPRTPWTPE 163 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD------ 223 R + + + +++ + L V D Sbjct: 164 DRVFGIALANLIALAVERDERIRAEEALRESEQRLATLVAYAPDAILVFDVDADRYIQVN 223 Query: 224 ----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + L++ S + + +Y + + + + Sbjct: 224 KQAALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVALRGGTPVFEWIHQNVG 283 Query: 280 LNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + L + + E + P + Sbjct: 284 GELIPCEIRLVRLPHARCRLVRGSIIDIGERKRTEQALRASEQRLSTMLAYSPDAITLLD 343 Query: 338 HG--NLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 N L Y+ + LS +A + +L D Sbjct: 344 VDTLRFVEVNEQAARLYGYERTTLLRLGPVELSPECQPDGRRSADAAREKVLEALDGGVP 403 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 G + + + + + ++ Sbjct: 404 VFE-----WTHLNAAGALFLCEVRLVRLPDASRRLVRGSIIDISERKRAEAALRESEARI 458 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYL 513 IL+A+ D I I+ G I+ N A + FGY + ++ + + + Sbjct: 459 RGILDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHRRGF 518 Query: 514 TEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNK 570 L+ L + + + I + + T+ DI+ K+ + + Sbjct: 519 ARYLATGEGPVLGRRIEVQAQRSDGTEFPVEISVTPILGGPKLVTATVRDITASKRTQEE 578 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AEK S KS+FLA +SHE+RTPL +++G+++++ R + R + N I Sbjct: 579 LHEAKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLL---RCEEELSQRQRKALNVI 635 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +SG + ++ ++LD++KIE+G +++ E V L + + + + A K + + Sbjct: 636 QQSGEHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAP 695 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++P ++ AD R + Q+ +N+L NAI +T G ++++ T V V DTG+G+ Sbjct: 696 GADVPAVVSADERRLCQVLMNLLDNAIKYTRHG-EVVLRTMMHERA-VCFVVEDTGLGIR 753 Query: 750 NYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + F Q+ S EGTGLGL ++K +V G+ + S P +G+ Sbjct: 754 PEHLSEIFDVFHQVRDPSMT--VEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFEL 811 Query: 809 PLYDTSHP 816 L S P Sbjct: 812 ELRPVSAP 819 Score = 78.9 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 37/388 (9%), Positives = 91/388 (23%), Gaps = 33/388 (8%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLK 138 +++DA +++++ G ++ + +S D D+ Sbjct: 210 LVFDVDAD-RYIQVNKQAALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVAL 268 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 R T + + G + I L LP ++R R G + + Sbjct: 269 RGGTPVFEWIHQNVGGELIPCEIRLVRLP-HARCRLVRG-----SIIDIGERKRTEQALR 322 Query: 199 RLDKKFSHL------------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 +++ S + + + E+ +++ L Sbjct: 323 ASEQRLSTMLAYSPDAITLLDVDTLRFVEVNEQAARLYGYERTTLLRLGPVELSPECQPD 382 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 D + + L L + + + Sbjct: 383 GRRSADAAREKVLEALDGGVPVFEWTHLNAAGALFLCEVRLVRLPDASRRLVRGSIIDIS 442 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 A E E +D + G + NP+ Y+ I Sbjct: 443 ERKRAEAALRESEARIRGILDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRE-- 500 Query: 366 LSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L+ L+ P L D + L + + + + + Sbjct: 501 LAELIIPPSLRDAHRRGFARYLATGEGPVLGRRIEVQAQRSDGTEFPV----EISVTPIL 556 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVM 452 + ++ + ++ Sbjct: 557 GGPKLVTATVRDITASKRTQEELHEAKE 584 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 75/244 (30%), Gaps = 21/244 (8%) Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P++ + P++ + + L + + + Sbjct: 95 PAYFQALGTS------EVIVVDDSHADPRIQEFFKTYLMPLGITAMLDVPIHLH-GRVDG 147 Query: 406 NRENSLAMTFIPFEKANQ--FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + P+ ++ + E + + + +L +++ D Sbjct: 148 VLRLAQLGPRTPWTPEDRVFGIALANLIALAVERDERIRAEEALRESEQRLATLVAYAPD 207 Query: 464 GIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMNHYLTEI 516 I + + + + N+ + LFGY E +L+ T + P YL Sbjct: 208 AILVFDVDADRYIQVNKQAALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVA 267 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHA 574 L + +L+ I + +LP + C + ++ DI E K+ + L + Sbjct: 268 LRGGTPV---FEWIHQNVGGELIPCEIRLVRLPHARCRLVRGSIIDIGERKRTEQALRAS 324 Query: 575 KKIA 578 ++ Sbjct: 325 EQRL 328 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 29/371 (7%), Positives = 82/371 (22%), Gaps = 25/371 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQ-NTWYG 145 ID G + E + +T G +IG L ++ + L G Sbjct: 472 IDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHRRGFARYLATGEGPVLG 531 Query: 146 KTTLWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + ++ P++++ PI + + V + + Sbjct: 532 RRIEVQAQRSDGTEFPVEISVTPILGGPKLVT-----ATVRDITASKRTQEELHEAKEAA 586 Query: 205 SHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 K + + + Q + + + L+ Sbjct: 587 EKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCEEELSQRQRKALNVIQQSGEHLQRLI 646 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +L + + ++ ++ + + A Sbjct: 647 EEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADVPAVVSAD 706 Query: 319 ENLTPETVDKCPI--------PFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTL 369 E + + V A + T + + + Sbjct: 707 ERRLCQVLMNLLDNAIKYTRHGEVVLRTMMHERAVCFVVEDTGLGIRPEHLSEIFDVFHQ 766 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL-AMTFIPFEKANQFPENM 428 + P ++ + + + + ++ + + P N Sbjct: 767 VRDPSMTVEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFELELRPVSAPTPVATNW 826 Query: 429 PQNGIEPEDVD 439 P G+ Sbjct: 827 PVTGVAGARRR 837 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 30/386 (7%), Positives = 89/386 (23%), Gaps = 30/386 (7%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------QNTWYGKT 147 E++E+ + G ++ + ++S D ++ + Sbjct: 348 RFVEVNEQAARLYGYERTTLLRLGPVELSPECQPDGRRSADAAREKVLEALDGGVPVFEW 407 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 T G + L LP +R RG I A + + + + Sbjct: 408 THLNAAGALFLCEVRLVRLP--DASRRLV--RGSII--DISERKRAEAALRESEARIRGI 461 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + I + K+ + + + Sbjct: 462 LDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHRRGFARY 521 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + Q + F ++ + + S E + Sbjct: 522 LATGEGPVLGRRIEVQAQRSDGTEFPVEISVTPILGGPKLVTATVRDITASKRTQEELHE 581 Query: 322 TPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E +K + + + + L + + L+ + + + Sbjct: 582 AKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCEEELSQRQRKALNVIQQSGEH 641 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + + + + A + + + +T + P + Sbjct: 642 LQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADVPA 701 Query: 436 EDVDTRINKRKMEIEVMQLCSILEAT 461 ++ L ++L+ Sbjct: 702 VVSADERRLCQV------LMNLLDNA 721 >gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1436 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 138/762 (18%), Positives = 268/762 (35%), Gaps = 64/762 (8%) Query: 92 HGY---LKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTWY 144 G +++++ + G A K++G RL +V ++ +D + + + Sbjct: 328 DGRDFIIRDLNHAVEYIEGVEATKLLGRRLTEVFPGVAECGFLD---VFARVWRTGRAEH 384 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 L+ + + + LP E + V R + + Sbjct: 385 IPPRLYHDQRIQGWRENFVYRLPH----GELVAV--YDDVTERRTLQLALEESRERLELA 438 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKY 259 E+ V+ + + + R+ + + + Sbjct: 439 LEGSELGMWDWRVQTGEVRFNDRWARILGYRLDELEPISIQTWNDLCHPDDRARVDRQLR 498 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEG 318 E + + + + ++ + + +E Sbjct: 499 RHFQGETAHYECEIRMRHKDGHWVWILDRGKVVEWGPDQRPVRMAGTHLDITERRQTEEK 558 Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + V++ P + + YANP+F ++ Y +E A G + L + Sbjct: 559 LHQLSLAVEQSPTSIVITDLDACIEYANPAFTRVSGYT----LEEAIGQNPRLLQSGQTP 614 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + LH + + E + + I ++ + Sbjct: 615 REIYEDLWVTLQRGEVW--RGELHNKRKDDELYVELATI-SPVRQPDGRVTHYLAVKEDI 671 Query: 438 VDTRINKRKMEIEVMQL------------------CSILEATSDGIAIINREGIILSTNR 479 D + + +++ L ILE+++DG+ ++ G N Sbjct: 672 TDLKCAQEELDRYRQHLEELVETRTRELQLAEEHSRLILESSADGLYGVDIAGRTTFVNP 731 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 A + GY E +L +P + + + L L + Sbjct: 732 AACAMLGYTPEQLLGRPSHEIIHHSHVDGRHYPMEDCLLHSTLLNGEVLRGDDEVFWR-A 790 Query: 535 EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + L + + ++ D+S KQ + A AE+ + KS+FLA Sbjct: 791 DGTPLPVSYSSHPIRREGEIVGAVVSFIDVSTQKQAEAAREAALAEAERLARLKSEFLAN 850 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL A++GF+++ + R + I SG L+L I+ND+LD SKIE Sbjct: 851 MSHEIRTPLNAVLGFAQIGARE----TDPNRARTFFRRILDSGQLLLGIINDILDFSKIE 906 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 +GK+++H V L + ++ L+ A +K + N+P + D + Q+ N Sbjct: 907 AGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDDLRLSQVLAN 966 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNA+ FT G + ++ V DTG+GM L +PF Q S R Sbjct: 967 LLSNAVKFTDQGA-VTFGIRREE-GWIVFSVEDTGIGMHEDYLANLFQPFEQADGSITRR 1024 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 G+GLGL ++K +V+ G+ +S +GT E PL + Sbjct: 1025 YGGSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRLPLIE 1066 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 43/421 (10%), Positives = 97/421 (23%), Gaps = 20/421 (4%) Query: 178 FRGFGIVHVNRVDNDPRALGKRLDK-KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---- 232 R G+ +R LD K + + + ++ P Sbjct: 25 LRRAGVAFESRRVETREDFLVALDDFKPDAILADFGLPRFDGRTAMQLAHERDPDWPFIF 84 Query: 233 -HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + + + D +LK L + E +L + L Sbjct: 85 VTGALGEESAVELLRNGASDYILKDRLTRLPEALERALEAARQRADLRLMARRASGLLEL 144 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351 + + + V A Sbjct: 145 PRVAEHFGEAEFLQFGQTLVEDLTGSRIAFIHRVSEDQTTIDLVTWSHRTLDAGCLAAPP 204 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 A L P + +++ RS+ I + + Sbjct: 205 LHESVDQAGLWADALRQ--QRPIVVNDDPTAAERRGRSEEGHIPLERFISLPVIEGGRVV 262 Query: 412 AMTFIPFEKANQFPENMPQNGIEP----EDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + I ++A ++ + + R ++ + + ++ E G+ I Sbjct: 263 MLFCIGNKEAPYTELDVETLQLVANELWRILCQRRAEQDLRESEARFHALFEHMRSGVCI 322 Query: 468 INR--EGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +G I N AV + G +L + T + Sbjct: 323 YEAIEDGRDFIIRDLNHAVEYIEGVEATKLLGRRLTEVFPGVAECGFLDVFARVWRTGRA 382 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E I ++++ R D++E + + L +++ E Sbjct: 383 ---EHIPPRLYHDQRIQGWRENFVYRLPHGELVAVYDDVTERRTLQLALEESRERLELAL 439 Query: 583 S 583 Sbjct: 440 E 440 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 42/379 (11%), Positives = 93/379 (24%), Gaps = 37/379 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLK 138 + +D G ++ +G +++G ++ H+D ++ + LL Sbjct: 717 LYGVDIAGRTTFVNPAACAMLGYTPEQLLGRPSHEIIHHSHVDGRHYPMEDCLLHSTLLN 776 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + W +GT +P+ ++ PI R E G I A + Sbjct: 777 GEVLRGDDEVFWRADGTP--LPVSYSSHPIR-REGEIVGAVVSFI--DVSTQKQAEAARE 831 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + L +K + + P + + E ++ Sbjct: 832 AALAEAERLARLKSEFLANMSHEIRT------PLNAVLGFAQIGARETDPNRARTFFRRI 885 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN-HPSLSAYFDE 317 + + DF I + L+ + S + L+ R L +E Sbjct: 886 LDSGQLLLGIINDILDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEE 945 Query: 318 GE-----------NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 L+ + G + + + D G Sbjct: 946 DPNLPATFMGDDLRLSQVLANLLSNAVKFTDQGAVTFGIRREEGWIVFSVEDT--GIGMH 1003 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP- 425 L A + + + + ++ A + + Sbjct: 1004 EDYLANLFQPFEQADGSITRRYG-GSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRL 1062 Query: 426 ---ENMPQNGIEPEDVDTR 441 E G +T Sbjct: 1063 PLIEPRGVIGPGRLITETA 1081 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 14/146 (9%), Positives = 38/146 (26%), Gaps = 5/146 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D ++ + + G + IG + + L+R W G+ Sbjct: 576 TDLDACIEYANPAFTRVSGYTLEEAIGQNPRLLQSGQTPREIYEDLWVTLQRGEVWRGEL 635 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + ++ P+ + + + + + R + L Sbjct: 636 HNKRKDDELYVELATIS--PVRQPDGRVTHY--LAVKEDITDLKCAQEELDRYRQHLEEL 691 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPH 233 E + + +E + + S Sbjct: 692 VETRTRELQLAEEHSRLILESSADGL 717 >gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19] gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19] Length = 757 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 102/474 (21%), Positives = 200/474 (42%), Gaps = 19/474 (4%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y +P + G L + AI + S R Sbjct: 148 TYWSPETYAIFGCDPETFTPRFGETMALYHPDDREEIRAIVEAAIA----GNGEFSFRAR 203 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 I+ + + + ++ + + G+ + D + E + + +++ Sbjct: 204 CIRHDSGEIRHIETNGVCERDESGKAIGLFGVVHDLSDILSAQEATEASEARYRLLADSS 263 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +D I++ +G I + AV KL G+ ++ + + V + Sbjct: 264 NDIISVFGLDGAIEYLSPAVEKLLGFTPAELTGRNVRDIVLPEDYPVTRAAFASYVRGGD 323 Query: 522 RQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576 + + K+ ++ L + + + DI+E K + L A Sbjct: 324 WSAVPRVQYRARHKQGHIVWLEASPRAMLGPDGKIAKLQDVVRDITERKAVEAALEDAMV 383 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 A + KS FLA +SHE+RTPLT+IIGFS +++ + + Y+ I + Sbjct: 384 DANAAAEAKSQFLATMSHELRTPLTSIIGFSALLRE----VVESEEPRRYSQRIWTASQG 439 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD SK+E+G++ L P S +E + E L+++ A+ K + + +++P Sbjct: 440 LLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPL 499 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 +L D ++QI +N+ NA+ FT GG + I+ + + + V DTG G++ ++ Sbjct: 500 MLLDEVRMRQILINLAGNAVKFTGDGG-VTIALHWR-GDRLQVTVTDTGPGISPEGHKRL 557 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K F Q+ ++ GTGLGL + K +V+ G+ + S+P G++ P+ Sbjct: 558 FKRFSQVDHTTN----GTGLGLMICKQLVELMGGRIGVESSPGNGSMFWFDIPV 607 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 7/235 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 G ++ +S + K +G ++ G + D+ R W + Sbjct: 271 GLDGAIEYLSPAVEKLLGFTPAELTGRNVRDIVLPEDYPVTRAAFASYVRGGDWSAVPRV 330 Query: 150 WPIEGTNLY--VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 V ++ + + + + + + +V A + + Sbjct: 331 QYRARHKQGHIVWLEASPRAMLGPDGKIAKLQ--DVVRDITERKAVEAALEDAMVDANAA 388 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E K + + ++ V S + L + + Sbjct: 389 AEAKSQFLATMSHELRTPLTSIIGFSALLREVVESEEP---RRYSQRIWTASQGLLALIN 445 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + L L + E +H L+ D+ L Sbjct: 446 DILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPLM 500 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 51/526 (9%), Positives = 127/526 (24%), Gaps = 80/526 (15%) Query: 90 DAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + + G K G L S + L + + + Sbjct: 17 DNDGTIVAANRYFRAMSGYDGGPKTFGRCLTRPS-QFILSAKLLPELNLTGEASEIALSL 75 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-----------RALG 197 P +G + VPI L A R+ + + F R Sbjct: 76 TGP-DGDS--VPILLNAR----RDGDHFHYAVFP-AKERREYETEYLNAKKKLTQYSDYL 127 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + ++ H + + ++ P ++ Y+ + ++ Sbjct: 128 RMAERLAHLGHWHGNMVTKETYWSPETYAIFGCDPETFTPRFGETMALYHPDDREEIRAI 187 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSA 313 + + + ++ S ++ + S Sbjct: 188 VEAAIAGNGEFSFRARCIRHDSGEIRHIETNGVCERDESGKAIGLFGVVHDLSDILSAQE 247 Query: 314 YFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E D V+ G + Y +P+ L + + + +L Sbjct: 248 ATEASEARYRLLADSSNDIISVFGLDGAIEYLSPAVEKLLGFTPAE-LTGRNVRDIVLPE 306 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQN 431 D + +A R+ + + + + + P + Sbjct: 307 ----DYPVTRAAFASYVRGGDWSAVPRVQYRARHKQGHIVWLEASPRAMLGPDGKIAKLQ 362 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + + + +E +A D N A + Sbjct: 363 DVVRDITERKAVEAALE----------DAMVDA-------------NAAAEA----KSQF 395 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + + + L E++ + + + S Sbjct: 396 LATMSHELRTPLTSIIGFSALLREVVESEEPRRYSQRIW------------------TAS 437 Query: 552 SCYSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSH 594 ++DI + + + +L A A + +D L +H Sbjct: 438 QGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAH 483 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 8/142 (5%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + E G+ + + +G I++ NR + GY + + L Sbjct: 3 EAAFELAPCGLVVCDNDGTIVAANRYFRAMSGYDGGPKTFG--RCLTRPSQFILSAKLLP 60 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 E+ + G + + + + ++ + + E ++ + + +A Sbjct: 61 ELNLTGEASEIALSLTG--PDGDSVPILLNARR--DGDHFHYAVFPAKERREYETEYLNA 116 Query: 575 KKIAEKES--SHKSDFLARVSH 594 KK + S ++ LA + H Sbjct: 117 KKKLTQYSDYLRMAERLAHLGH 138 >gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1120 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 118/562 (20%), Positives = 212/562 (37%), Gaps = 21/562 (3%) Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 E + I T+ + L + F Sbjct: 214 TGMAAARFIPPPGVVLEQANNIGSGLLATGVTITTIVITALVIAINLVLKYREVSQKAF- 272 Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E ++ + + G + N + + + I L L+ P Sbjct: 273 ANEQRLEAMMETAADGIVSINAKGIITSINQAITAMLGWDKAQLIGQNVSL--LMPEPDK 330 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 +++ L ++ I + + + + + P G Sbjct: 331 GRHDSYLSRYLATNEPHIIGNAREVTALHKLG---HTVPVRLAIGHARLPNEDVFVGFIS 387 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGI-ILSTNRAVSKLFGYPVEDIL 493 + +R+++ + S++ ++ EG +L + AV + GYP D L Sbjct: 388 DISQRLKMERELKENEEKFRSLIGNIPGAAYRCLDTEGWPMLFVSDAVFDITGYPASDFL 447 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + L D +T + ++ + + Sbjct: 448 LPNPVRNICDLYHPEHQELLQ--FDADKNKTFSLEYRIIRSDGEIRWVLETGTYVKDPQG 505 Query: 554 YS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DI+ KQ + L AK+ AE + KS FLA +SHEIRTP+ AIIGFS+V Sbjct: 506 SVLWMDGFIMDITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDV 565 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + +Y I+ S N +L ++ND+LD +K+E G++ L + SL E + Sbjct: 566 MLTTDLVAA----QRKYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVID 621 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 S + + +KR+ I S A + ++Q+ +NI+ NA+ FT G Q+ +S Sbjct: 622 MVTSTLSIQTRKKRLDIELSLAPELAEYYYGAADRLRQVLMNIVGNAVKFTEKG-QVHLS 680 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T + +V+ V+DTG+G+ + ++ +PF Q S R GTGLG ++K +V+ Sbjct: 681 IKPTQDGKVLFSVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLM 740 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ + S KG+ E I PL Sbjct: 741 GGEIWASSELGKGSCFEFILPL 762 Score = 47.3 bits (111), Expect = 0.012, Method: Composition-based stats. Identities = 28/256 (10%), Positives = 66/256 (25%), Gaps = 19/256 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW---- 143 I+A G + I++ + +G ++IG + + ++ + L Sbjct: 292 INAKGIITSINQAITAMLGWDKAQLIGQNVSLLMPEPDKGRHDSYLSRYLATNEPHIIGN 351 Query: 144 YGKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + T G VP+ LA F GF + K ++ Sbjct: 352 AREVTALHKLGHT--VPVRLAIGHARLPNEDVFVGF-----ISDISQRLKMERELKENEE 404 Query: 203 KFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKY 259 KF L + ++ E + + + L + D+ E Sbjct: 405 KFRSLIGNIPGAAYRCLDTEGWPMLFVSDAVFDITGYPASDFLLPNPVRNICDLYHPEHQ 464 Query: 260 PLLTSEES---SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 LL + + + + + +++ + + Sbjct: 465 ELLQFDADKNKTFSLEYRIIRSDGEIRWVLETGTYVKDPQGSVLWMDGFIMDITPRKQME 524 Query: 317 EGENLTPETVDKCPIP 332 + E + Sbjct: 525 QDLQKAKEAAELATEA 540 >gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1228 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 128/750 (17%), Positives = 268/750 (35%), Gaps = 61/750 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRL------CDVSDILHI-DPNNHIGDLLKR 139 W +D +++ G A + G + + + + +L Sbjct: 352 WEMDIATRTFLFNDQFYSLYGTTAQREGGYHMTSETYEREFLHPDDATMVSREVARVLVT 411 Query: 140 QN---TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 Q T + + +G ++ + L + + + G Sbjct: 412 QKPNYTARLEHRIVRRDGEVRHIVVT--YLLLRDTHGNPV--KTIGANQDVTEHKRFEQA 467 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDV 253 + + + L + + L + +A + Sbjct: 468 LFQSRESYRALLAGMPDIVMRFDREGRHLFVSDSVQAYVEPTSEAFLGKTHAELGFPEQD 527 Query: 254 LKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + T E+ P + +F + + + LS + Sbjct: 528 CLFWGKVIKTVFETGEPVETEFPFESRKGPVIFNWRLIPEFDANGQIQSALSISRDITEQ 587 Query: 313 AYFDEG-ENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGG 365 ++ E+L + +D + + NP+F T K+ + + Sbjct: 588 RQAEQDYESLFMKMLDGFAVHEIICDESGRPIDYRFLAVNPAFESHTGMKAEEVLGH--- 644 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 T+L+ +++ ++ + + H ++ + FE P Sbjct: 645 --TVLEILPDTESAWVEKYGHVALTGEPLHFESYSHMLRKH-----------FEVTAFRP 691 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484 I + + + L I E + D I+I + R L N A Sbjct: 692 APGRFACIFADVTERMQAQ-------EDLRRIFELSKDMISISDNRSARFLRINPAFMST 744 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY E++LR+P+T + + + + + L + + K + + L + Sbjct: 745 LGYSEEELLRQPYTALVHPDDVQMTADIIRDKLMAG-DEVVNFENRYRCKSGEYIWLNWV 803 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + D+++ K+ + +L AK+ AE + KS FLA +SHE+RTPL I+ Sbjct: 804 ARPMADKGLTYAIARDVTDRKKYEAELIAAKETAESATRAKSQFLANMSHEVRTPLNGIL 863 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ R + +Y ++ + +++D+LDIS+IE+ K+ + EP +L Sbjct: 864 GMLQLMQQTRL----DHEQDDYVGNAIQASRRLTRLLSDILDISRIEAEKLIIMAEPFNL 919 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 E+++ L AN+ I + IP +L D ++Q+ N++ NA+ FT SG Sbjct: 920 HESLNTVRDLFLPVANQSGIDFEFRVSPKIPTTLLGDAIRLQQVISNLVGNALKFTSSG- 978 Query: 724 QIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + + T + ++ ++DTG G+ + L + +PF Q+ +S + +G GLGL Sbjct: 979 TVTVEATTLSPLKPGSCRMLFSIKDTGCGIPDDRLGQLFQPFTQVDDSWNRQYQGAGLGL 1038 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + K +V G I S GT + + Sbjct: 1039 SITKRLVALMGGTLCIESRVGVGTTVHLSI 1068 Score = 100 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 58/591 (9%), Positives = 145/591 (24%), Gaps = 79/591 (13%) Query: 87 WNID-AHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W D A G S+E+ + + + + +I + + Sbjct: 218 WTYDSATGTAT-WSDEMFRLWDLDSEQGPPNRDTFIQSIHPDDVQAVKNILSRTRESGAF 276 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +GT +A + + G + R + Sbjct: 277 SLDFRIKRPDGTTR----TVAMRGMRKDDGTGQATVMQGTCQDITERKQVQEALNRQRSE 332 Query: 204 FSH---LHEIKKGHSSVEKEKYDIFSQ---------------QSPPPHLRMKNKVSSLTE 245 + + + + DI ++ M ++ Sbjct: 333 LEESQTRLRLAMDMADIAPWEMDIATRTFLFNDQFYSLYGTTAQREGGYHMTSETYEREF 392 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYL 303 + ++ E +L +++ + + + + + L++ + + Sbjct: 393 LHPDDATMVSREVARVLVTQKPNYTARLEHRIVRRDGEVRHIVVTYLLLRDTHGNPVKTI 452 Query: 304 SHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 + F++ + P + G + + S + S + Sbjct: 453 GANQDVTEHKRFEQALFQSRESYRALLAGMPDIVMRFDREGRHLFVSDSVQAYVEPTS-E 511 Query: 359 DIEIAGGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 T +R + + Sbjct: 512 AFLGKTHAELGFPEQDCLFWGKVIKTVFETGEPVETEFPFESRKGPV--------IFNWR 563 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG 472 + + + I + + R ++ S+ DG I + G Sbjct: 564 LIPEFDANGQIQSALSISRDITEQRQAEQD-------YESLFMKMLDGFAVHEIICDESG 616 Query: 473 -----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 L+ N A G E++L L + + Y L+ + Sbjct: 617 RPIDYRFLAVNPAFESHTGMKAEEVLGHTVLEILPDTESAWVEKYGHVALTGEPLHFESY 676 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----KKIAEKESS 583 + + + P ++ D++E Q + L K + + Sbjct: 677 SHMLRKH------FEVTAFR-PAPGRFACIFADVTERMQAQEDLRRIFELSKDMISISDN 729 Query: 584 HKSDFLARVSHEIRTP-LTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDR 632 + FL P + +G+S E + Q + L +P ++ I R Sbjct: 730 RSARFLRI------NPAFMSTLGYSEEELLRQPYTALVHPDDVQMTADIIR 774 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 28/310 (9%), Positives = 80/310 (25%), Gaps = 32/310 (10%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDI 360 ++ E E I + Y + L S Sbjct: 186 LINRLRRGLAEQILAENRLHLVEAQKLALIGSWTYDSATGTATWSDEMFRLWDLDSEQ-- 243 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 T + + D A+K ++ + + I+ + + K Sbjct: 244 -GPPNRDTFIQSIHPDDVQAVKNILSRTRESGAFSLD---FRIKRPDGTTRTVAMRGMRK 299 Query: 421 ANQFPENMPQNGIEPEDVDTR-------INKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + G + + + + ++E +L ++ ++ Sbjct: 300 DDGTGQATVMQGTCQDITERKQVQEALNRQRSELEESQTRLRLAMDMADIAPWEMDIATR 359 Query: 474 ILSTNRAVSKLFGYPVEDILRKPF------TVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 N L+G + FL + ++++ + +L + Sbjct: 360 TFLFNDQFYSLYGTTAQREGGYHMTSETYEREFLHPDDATMVSREVARVLVTQKPNYTAR 419 Query: 528 -ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 ++ ++ + + L + D++E K+ + L +++ Sbjct: 420 LEHRIVRRDGEVRHIVVTYLLLRDTHGNPVKTIGANQDVTEHKRFEQALFQSRESYRA-- 477 Query: 583 SHKSDFLARV 592 LA + Sbjct: 478 -----LLAGM 482 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 33/374 (8%), Positives = 96/374 (25%), Gaps = 31/374 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 D G +S+ + + + +G ++ + I + + Sbjct: 486 VMRFDREGRHLFVSDSVQAYVEPTSEAFLGKTHAELGFPEQDCLFWGKVIKTVFETGEPV 545 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +P E V + +P + N + I + Sbjct: 546 ETE---FPFESRKGPVIFNWRLIPEFDANGQIQ--SALSISRDITEQRQAEQDY---ESL 597 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 F + + H + E + + ++ ++VL +L Sbjct: 598 FMKMLDGFAVHEIICDESGRPIDYRFLAVNPAFESHTG------MKAEEVLGHTVLEILP 651 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---EN 320 ES+ E+ + + Y L+ + + + + + A E + Sbjct: 652 DTESAWVEKYGHVALTGEPLHFESYSHMLRKHFEVTAFRPAPGRFACIFADVTERMQAQE 711 Query: 321 LTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + NP+F+ Y + + A D+ Sbjct: 712 DLRRIFELSKDMISISDNRSARFLRINPAFMSTLGYSEEELLRQP------YTALVHPDD 765 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + ++ + + + + ++ A++ I + Sbjct: 766 VQMTADIIRDKLMAGDEVVNFENRYRCKSGEYIWLNWVARPMADKG----LTYAIARDVT 821 Query: 439 DTRINKRKMEIEVM 452 D + + ++ Sbjct: 822 DRKKYEAELIAAKE 835 Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 25/269 (9%), Positives = 71/269 (26%), Gaps = 14/269 (5%) Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + + L T + G + + L+D + + M Sbjct: 87 VAVIATAAFRLTLGGQGA--WTGVTVIVATGAIGVIWRHMKKKPLADASWGE--MFLFGL 142 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + A + T+ W + + + + ++ + Sbjct: 143 TLHLTMLALMLTLPWETAKVVLARITAPVLLLFPVGTCLMGLLLINRLRRGLAEQILAEN 202 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSV 508 + L + G + + + + +L+ E R F + + Sbjct: 203 RLHLVEAQKLALIGSWTYDSATGTATWSDEMFRLWDLDSEQGPPNRDTFIQSIHPDDVQA 262 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEW 564 + + L+ + ++ + + + + M DI+E Sbjct: 263 VKNILSRTRESGA---FSLDFRIKRPDGTTRTVAMRGMRKDDGTGQATVMQGTCQDITER 319 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVS 593 KQ + L+ + E+ S + ++ Sbjct: 320 KQVQEALNRQRSELEE-SQTRLRLAMDMA 347 >gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1033 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 134/777 (17%), Positives = 256/777 (32%), Gaps = 49/777 (6%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + + D++ + F W +D G +S + + G +M Sbjct: 139 FRDITERRSAENRARDNQEKYRFLAEN-ATDVIWTMDDKGRYTYVSPSVERIRGFAPEEM 197 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQN----------TWYGKTTLWPIEGTNLYVPIDL 163 IGM D ++ + ++ + T + L +G+ + + Sbjct: 198 IGMYAQDAVCPDSMEETRKAWERIEAEAEAASDRSPSPTVRVEVRLRKKDGS--MIWGES 255 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A + GF G + + L + + Sbjct: 256 MARRLRDAYGNPIGF--IGTTRDITERKRIEERLRTSEHFLQALINATGDSVGLFQVDGT 313 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + + +++ + + + + + Sbjct: 314 VLAMNRNMARFMGMQGDAAVGQNVFDFIPRSQHAMIRETFRRAVDTHTPMNRQVVWSGRI 373 Query: 284 TKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN- 340 + L + + + V+ Sbjct: 374 LDGIIYPVLDGEETTAIAVYGRDVTEARFAEEARKKTQEQYRLIVETANEGILGLDANQV 433 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + YAN + + I ++LD S+ + M R R Sbjct: 434 ITYANKIVADFFGCRVEEVIGR-----SILDFMAPSEIEDNERRMEQRKVGRRERYERRF 488 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + M + + + + + + +L +IL+ Sbjct: 489 --VRRDGAEVWGM-ISSTPLMAEDGRLLGAFAMIADITEVKQAH-------ERLLNILDG 538 Query: 461 TSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 S + + + E IL N + +G E + L+ P L + Sbjct: 539 ISADVYVSDLETNNILFMNANMRDHYGLLEEGMACHKVIRDLDSRCPQCPKPELVD-ERG 597 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 TL + L+ I+ L + DI+E K +L A AE Sbjct: 598 RPVGTLVSERYYEKLQRWHLNHDRAIRWLKGRLVHMHMAADITEIKTMAAELEKAMAKAE 657 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S K++FLA +SHEIRTPL ++G ++++ PL +Y + SG +L Sbjct: 658 AASLAKNEFLANMSHEIRTPLNGLLGMLQLMQMSELAPL----QRDYLDTALNSGRSLLQ 713 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD+SK+ESGK+ L P L E + + +S + A E+ + +R +PR + Sbjct: 714 VLNDILDLSKVESGKLELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFV 773 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYE 752 AD ++QI N++ NA+ FT SG I + + ++ V DTG+G+ + Sbjct: 774 ADKGRLRQILFNLVGNAVKFTESGS-IEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDK 832 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEII 807 + PF Q+ S + +GTGLGL + + +V G + + KGT I Sbjct: 833 VSTVFDPFTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTIR 889 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 52/507 (10%), Positives = 131/507 (25%), Gaps = 42/507 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G + E + IG ++G + D + LL + + Sbjct: 45 KTDVKGVILEANAAFCTLIGYAREDVLGKTVLDFTPRSERARERESIRLLLKSGQSSREM 104 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + + + + +GI + +K+ L Sbjct: 105 EKGLLTADGRDLLVQASCWLQHDESGRAVAL--WGIFRDITERRSAENRARDNQEKYRFL 162 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL--- 262 E +K +R ++ + A D ++ + Sbjct: 163 AENATDVIWTMDDKGRYTYVSPSVERIRGFAPEEMIGMYAQDAVCPDSMEETRKAWERIE 222 Query: 263 --------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 S ++ + + + + L++ ++ + Sbjct: 223 AEAEAASDRSPSPTVRVEVRLRKKDGSMIWGESMARRLRDAYGNPIGFIGTTRDITERKR 282 Query: 315 FDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 +E + + + F G + N + + + Sbjct: 283 IEERLRTSEHFLQALINATGDSVGLFQVD-GTVLAMNRNMARFMGMQGDAAVGQN----- 336 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + D S + I+ D + + + + E Sbjct: 337 VFDFIPRSQHAMIRETFRRAVDTHTPMNRQVVWSGRILDGIIYPVL--------DGEETT 388 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + R + + Q I+E ++GI ++ +I N+ V+ FG Sbjct: 389 AIAVYGRDVTEARFAEEARKKTQEQYRLIVETANEGILGLDANQVITYANKIVADFFGCR 448 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 VE+++ + F+ S + + + + ++ + I L Sbjct: 449 VEEVIGRSILDFMAP---SEIEDNERRMEQRKVGRRERYERRFVRRDGAEVWGMISSTPL 505 Query: 549 PFSSCYS----LTMHDISEWKQEKNKL 571 + DI+E KQ +L Sbjct: 506 MAEDGRLLGAFAMIADITEVKQAHERL 532 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 37/311 (11%), Positives = 95/311 (30%), Gaps = 18/311 (5%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350 ++ S E S D G + AN +F Sbjct: 2 TRSESNERGASAPEGTSRSERGESFIDPVCFKGLCDALGDGVVKTDVKGVILEANAAFCT 61 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 L Y D + G + L P+ + + L + + + Sbjct: 62 LIGYAREDVL----GKTVLDFTPRSERARERESIRLLLKSGQS-SREMEKGLLTADG-RD 115 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 L + + + ++ + GI + + R + + + + E +D I ++ Sbjct: 116 LLVQASCWLQHDESGRAVALWGIFRDITERRSAENRARDNQEKYRFLAENATDVIWTMDD 175 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ------- 523 +G + +V ++ G+ E+++ + ++ I + Sbjct: 176 KGRYTYVSPSVERIRGFAPEEMIGMYAQDAVCPDSMEETRKAWERIEAEAEAASDRSPSP 235 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAE 579 T+ K+ ++ + ++L + + T DI+E K+ + +L ++ + Sbjct: 236 TVRVEVRLRKKDGSMIWGESMARRLRDAYGNPIGFIGTTRDITERKRIEERLRTSEHFLQ 295 Query: 580 KESSHKSDFLA 590 + D + Sbjct: 296 ALINATGDSVG 306 >gi|171914280|ref|ZP_02929750.1| sensory transduction histidine kinase [Verrucomicrobium spinosum DSM 4136] Length = 742 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 116/749 (15%), Positives = 251/749 (33%), Gaps = 63/749 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLW 150 GY K ++ +T+G +++ + NT + Sbjct: 25 DGYFKRLNPAWERTLGYSTEELMAQPYRAFIHPDDFARTEAEAARINTGANTIAFENRYR 84 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +GT Y ++ A P R+ F + + + Sbjct: 85 CKDGT--YRWLEWRARP--DMERQII----FAAARDTTRFKQLEDELRANSALQRAMLDG 136 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKY-------- 259 + I L + + + H + Sbjct: 137 ANLAIISCRPDGIIQGFNVGAEQLLGYKTAEVIGKNSPSIFHDPQEIARRAAFLTQELGY 196 Query: 260 ---------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + + ++ ++++S ++ YL + + Sbjct: 197 PVEVGFQTFVAKALLGPPDENEWTYIRKDGSRIPVMLTVTIMRDDSGQTTGYLGIASDLT 256 Query: 311 LSAYFDEG----ENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 D E +D F+ GN N F L AG Sbjct: 257 AKRQADRAQLELEARLQAILDNTTAVVFLKDREGNYQTVNRRFEELFHLTREQM---AGK 313 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + P+ + + + + + L I + + + F + Sbjct: 314 NDYDIFPPEFARAFRDNDAKVLATGQAMV-----LEEIAPHAGVAHTYVSVKFPVLDSEN 368 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + GI + D + + ++ +L SILE + I ++ +G+I S N A +++F Sbjct: 369 QIIALGGIATDITDRKRAEMELRDREARLSSILETAVEAIVTMDEKGLIQSINPAAAEIF 428 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLEKITLGSTKEEKLLSLRI 543 GY +I+ + +V + + + R + LG K+ ++ L + Sbjct: 429 GYQRGEIIGRNISVIVPAPNLLSPSLTSQNVPPAPDTERAGQSRELLGRRKDGSIVPLIL 488 Query: 544 IIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + MHDI+ K+ + L + + F SH+++ PL Sbjct: 489 SVSQTHTGNRVIYTAIMHDITMRKRFEEDL-------RRSNKELEQFAYIASHDLQEPLR 541 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I + ++++ + G L N ++ + +++ DLL S++ G P Sbjct: 542 MITSYLQLLERRYKGEL-NEEAGQFIATAVDGAARMRNLIQDLLSYSRV--GTQGRELAP 598 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TP 720 VS + + + +++ E +I +P I+AD ++Q+ N++ NA+ F + Sbjct: 599 VSCGQLIQSVLGDLEVSIKECSAVITVE---TLPTIVADELQLRQVFQNLIGNALKFRSE 655 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +I IS E ++ +RD G+G+ E+ F ++ + + GTG+GL L Sbjct: 656 QTPRIHISAQPC-RGEWVISIRDNGIGIEPKFFERIFVIFQRLHA--REQYPGTGIGLAL 712 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+ + G+ ++ S+ KG P Sbjct: 713 CKRIVERHHGQIWVDSSTGKGATFFFSLP 741 Score = 77.4 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 35/391 (8%), Positives = 103/391 (26%), Gaps = 34/391 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---------N 141 G ++ + + +G ++IG + L ++ Sbjct: 146 PDGIIQGFNVGAEQLLGYKTAEVIGKNSPSIFH--DPQEIARRAAFLTQELGYPVEVGFQ 203 Query: 142 TWYGKTTLWPIEG--------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ K L P + +P+ L + + + +G+ G I Sbjct: 204 TFVAKALLGPPDENEWTYIRKDGSRIPVMLTVTIMRDDSGQTTGYLG--IASDLTAKRQA 261 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAH 249 L+ + + + ++ + + + L R + + + + Sbjct: 262 DRAQLELEARLQAILDNTTAVVFLKDREGNYQTVNRRFEELFHLTREQMAGKNDYDIFPP 321 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHR 306 + + + + ++ +E + F L + Sbjct: 322 EFARAFRDNDAKVLATGQAMVLEEIAPHAGVAHTYVSVKFPVLDSENQIIALGGIATDIT 381 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + E ++ G + NP+ + Y+ + I Sbjct: 382 DRKRAEMELRDREARLSSILETAVEAIVTMDEKGLIQSINPAAAEIFGYQRGEIIGRN-- 439 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 +S ++ AP L + + + T A +R + + + + + Sbjct: 440 ISVIVPAPNLLSPSLTSQ-NVPPAPDTERAGQSRELLGRRKDGSIVPLILSVSQT--HTG 496 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + I + + + + +L Sbjct: 497 NRVIYTAIMHDITMRKRFEEDLRRSNKELEQ 527 Score = 74.7 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 2/131 (1%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L S + + D + I +G N A + GY E+++ +P+ F+ + + Sbjct: 5 EADLKSFFDHSLDLMCIAGFDGYFKRLNPAWERTLGYSTEELMAQPYRAFIHPDDFARTE 64 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 I + T+ K+ L + D + +KQ +++ Sbjct: 65 AEAARINTG--ANTIAFENRYRCKDGTYRWLEWRARPDMERQIIFAAARDTTRFKQLEDE 122 Query: 571 LSHAKKIAEKE 581 L + Sbjct: 123 LRANSALQRAM 133 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 36/384 (9%), Positives = 96/384 (25%), Gaps = 29/384 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + D G + ++ + +M G D+ ++ +L Sbjct: 283 VFLKDREGNYQTVNRRFEELFHLTREQMAGKNDYDIFPPEFARAFRDNDAKVLATGQAMV 342 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + YV + P+ + G I + + + Sbjct: 343 LEEIAPHAGVAHTYVSVKF---PVLDSENQIIALGG--IATDITDRKRAEMELRDREARL 397 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTE 257 S + E EK I S + + +S + L ++ Sbjct: 398 SSILETAVEAIVTMDEKGLIQSINPAAAEIFGYQRGEIIGRNISVIVPAPNLLSPSLTSQ 457 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 P E + +E Q ++ Y + + ++ F+E Sbjct: 458 NVPPAPDTERAGQSRELLGRRKDGSI-VPLILSVSQTHTGNRVIYTAIMHDITMRKRFEE 516 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + + +++ + S+L L + + ++ G + Sbjct: 517 DLRRSNKELEQFAY-IASHDLQEPLRMITSYLQLLERRYKGELNEEAG--------QFIA 567 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + ++ +R+ T I + + + + Sbjct: 568 TAVDGAARMRNLIQDLLSY-SRVGTQGRELAPVSCGQLIQSVLGDLEVSIKECSAVITVE 626 Query: 438 VDTRINKRKMEIEVMQLCSILEAT 461 I ++ QL + + Sbjct: 627 TLPTIVADEL-----QLRQVFQNL 645 >gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei Go1] gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei Go1] Length = 854 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 117/514 (22%), Positives = 214/514 (41%), Gaps = 41/514 (7%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-------SVDDIE 361 +E + + ++ + + N + + S+ Sbjct: 20 REAECDLEEKDRMYRALFEQSSDAVIISDGKKVLDINKKGCEIFGFGQKRPFNVSLMSFI 79 Query: 362 IAGGLSTLLDA--PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 A L L A ++ + + + + L I + Sbjct: 80 QAEYLPELQQAFKETFRQGSSNFEMRYQKPEGEIVDIKVNLSLIDRKDNIVQLVA----- 134 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTN 478 + ++ +R + +L +IL+ T GI +I I++ N Sbjct: 135 ---------------QDITVSKNIERSEQENRERLKAILDNTLCGILLIESSSRKIINAN 179 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 K GY ++++ ++Q+ + ++ T K Sbjct: 180 PIALKTAGYSDKELIGMTCYRLIDQHGEENCAAL--SLDQAGDLS----ESILLTATGKT 233 Query: 539 LSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L + ++ + + + + D+S+ KQ + +L AK AE + S+FLA +SHE+ Sbjct: 234 LPILRSVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAESANRSMSEFLATMSHEL 293 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLTAIIGFSE++ G + ++ I SG +L ++N +LD+SKIE+GKM Sbjct: 294 RTPLTAIIGFSELMLGGSTGEF-DELNKKFLGNISTSGKHLLSLINSILDLSKIEAGKME 352 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L + SL + S +++ A +K I + + + AD KQI N++SNA+ Sbjct: 353 LQSDYFSLQDIFSNTKNILSPLALKKNISMDFNVEPGF-FVYADRTRFKQIMYNLVSNAV 411 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT GG + + + V + V DTG+G++ E+++ KPF QI ++ + EGTGL Sbjct: 412 KFTQKGGSVEVLGIVSEKG-VRVSVSDTGIGISKDEIKQLFKPFKQIDSTLSRKYEGTGL 470 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL L+K V+ + G+ ++ S P KG+ P+ Sbjct: 471 GLVLSKKFVEMHGGRIWVESEPGKGSTFTFEVPV 504 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 51/154 (33%), Gaps = 5/154 (3%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 +E V R + +E + ++ E +SD + I + + +L N+ ++FG+ Sbjct: 7 RRWTELENTLVLYREAECDLEEKDRMYRALFEQSSDAVIISDGK-KVLDINKKGCEIFGF 65 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + F++ + E E +++ +++ + Sbjct: 66 GQKRPFNVSLMSFIQAEYLPELQQAFKETFRQGSS---NFEMRYQKPEGEIVDIKVNLSL 122 Query: 548 LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580 + L DI+ K + ++ + Sbjct: 123 IDRKDNIVQLVAQDITVSKNIERSEQENRERLKA 156 >gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 882 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 114/620 (18%), Positives = 234/620 (37%), Gaps = 39/620 (6%) Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTI 278 ++ + +P + ++ + L S + + Sbjct: 17 AAEVMNTITPADISDPQELIARARALSDELATDITPGFEALVFKASRGIEDIYELTYIRK 76 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPF 333 + ++ L++ + YL + +E Sbjct: 77 DGTRFPAVVSVTALRDVADAIIGYLLIGTDNTARKEAEEALLKAGALQSAIFNSANFSSI 136 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKP 383 + G + N + Y + + + + +L+ Sbjct: 137 ATDAKGVIQIFNVGAERMLGYAASEVMNTITPADISDPQELVARARALSAELATPIEPGF 196 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L I L I+ + A+ + + I ++ ++ Sbjct: 197 EALVFKASRGIEDIYELTYIRKDGTRFPAV-VSVTALRDAQGAIIGYLLIGTDNTARKLV 255 Query: 444 KRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + +L S++E+ D + + GII N+ L G ++++ P Sbjct: 256 EEEQKKSDQRLRDQQFYTRSLIESNIDALITTDPAGIITDVNKQTEALTGSTRDELIGAP 315 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554 F + + +L E ++ ++S Sbjct: 316 FKDCFTDPDRA--EAAIRRVLGEKSLTDYELTVRSRDGKQTVVSYNATTFYDRGRTLQGV 373 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D++E K+ + +L AK AE S KSDFLA +SHEIRTP+ A++G ++++ Sbjct: 374 FAAARDVTERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKTA 433 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P +Y RSG+ +L+++ND+LD+SK+E+ +++L SL + + +AI + Sbjct: 434 LTP----EQDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEM 489 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V A EK +++ + A ++ ++ D ++Q+ LN+L NAI FT +G Q+ + + Sbjct: 490 VAPKAQEKGLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQAG-QVSLKVERDA 548 Query: 734 NEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + V V DTG+G+ +L + + F Q +S R G+GLGL ++K +V+ Sbjct: 549 DGSVPTALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMG 608 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ + ST +G++ P Sbjct: 609 GRIGVTSTLGQGSVFAFSVP 628 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 31/411 (7%), Positives = 90/411 (21%), Gaps = 70/411 (17%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---------------- 138 ++ + + +G A ++ + ++ DP I Sbjct: 2 IQIFNVGAERMLGYTAAEV----MNTITPADISDPQELIARARALSDELATDITPGFEAL 57 Query: 139 -----RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 R + T +GT P ++ + G+ G N + Sbjct: 58 VFKASRGIEDIYELTYIRKDGT--RFPAVVSVTALRDVADAIIGYLLIGT--DNTARKEA 113 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHK 250 + S + S K I ++++T Sbjct: 114 EEALLKAGALQSAIFNSANFSSIATDAKGVIQIFNVGAERMLGYAASEVMNTITPADISD 173 Query: 251 DDVLKTEKYPLLTSEESSLPE-----------------QEDFHTINLNQYTKKQYFGTLQ 293 L L + + + + + ++ L+ Sbjct: 174 PQELVARARALSAELATPIEPGFEALVFKASRGIEDIYELTYIRKDGTRFPAVVSVTALR 233 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD------------KCPIPFFVYSHGNL 341 + YL + +E + + + + G + Sbjct: 234 DAQGAIIGYLLIGTDNTARKLVEEEQKKSDQRLRDQQFYTRSLIESNIDALITTDPAGII 293 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 N LT + I + A + +++ Sbjct: 294 TDVNKQTEALTGSTRDELIGAP------FKDCFTDPDRAEAAIRRVLGEKSLTDYEL--- 344 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 T++ +++ ++ + + + + +++ Sbjct: 345 TVRSRDGKQTVVSYNATTFYDRGRTLQGVFAAARDVTERKRVEAELQQAKA 395 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 34/269 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---------- 138 DA G ++ + + +G A ++ + ++ DP + Sbjct: 138 TDAKGVIQIFNVGAERMLGYAASEV----MNTITPADISDPQELVARARALSAELATPIE 193 Query: 139 -----------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 R + T +GT P ++ + G+ G + Sbjct: 194 PGFEALVFKASRGIEDIYELTYIRKDGT--RFPAVVSVTALRDAQGAIIGYLLIGTDNTA 251 Query: 188 R-----VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNKV 240 R + L E I Q+ ++++ Sbjct: 252 RKLVEEEQKKSDQRLRDQQFYTRSLIESNIDALITTDPAGIITDVNKQTEALTGSTRDEL 311 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 D + E+S + + + Q T + + Sbjct: 312 IGAPFKDCFTDPDRAEAAIRRVLGEKSLTDYELTVRSRDGKQTVVSYNATTFYDRGRTLQ 371 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + + + Sbjct: 372 GVFAAARDVTERKRVEAELQQAKAAAESA 400 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 5/140 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + +++++ G+ ++IG D I +L + + Sbjct: 287 TDPAGIITDVNKQTEALTGSTRDELIGAPFKDCFTDPD-RAEAAIRRVL-GEKSLTDYEL 344 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 V + A Y R R G F A ++ Sbjct: 345 TVRSRDGKQTV-VSYNATTFYDRGRTLQGV--FAAARDVTERKRVEAELQQAKAAAESAS 401 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 K + + Sbjct: 402 RTKSDFLASMSHEIRTPMNA 421 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 18/116 (15%) Query: 474 ILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------ 526 I N ++ GY +++ + L++ L+ D+ E Sbjct: 2 IQIFNVGAERMLGYTAAEVMNTITPADISDPQELIARARALSDELATDITPGFEALVFKA 61 Query: 527 -------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571 K+ + + L + Y L D + K+ + L Sbjct: 62 SRGIEDIYELTYIRKDGTRFPAVVSVTALRDVADAIIGYLLIGTDNTARKEAEEAL 117 >gi|298251062|ref|ZP_06974866.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549066|gb|EFH82933.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1095 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 110/767 (14%), Positives = 235/767 (30%), Gaps = 49/767 (6%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD +++ SE + + W G ++ ++ Sbjct: 365 TDIDEQKQVEERIKASEENWRVLAETVP-QLVWTTRPDGLSDYFNQRFRDYTHATWEQLY 423 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G + R+ T Y + T Y A+P+ + Sbjct: 424 GYGWSQFLHPEDYERTLAERAHSFRRGTPYEVAYRFREGQTGCYRWFLARAMPVRDETGQ 483 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230 + FG K +++F L E + Sbjct: 484 I--LKWFGTCTDIDEQKRTEQRLKESEERFQVLAETVPQLVWTTRPDGQFEYTNQHWCDY 541 Query: 231 ---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 ++ + L + + ++ L + + E H Sbjct: 542 TGLTLEQTQSDQWAQLPFIHPDDQEDIRARWQHALETGDMYEHEGLLKHAHTGEYRWFLT 601 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANP 346 +++ + + ++ + + +D P ++ L Y N Sbjct: 602 RAMPVRDEAGQILKWCGTCTDIHDKKRAEAELRV---LIDAIPQHVWILGPDGLSEYGNQ 658 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + T + G + + + + RL Sbjct: 659 RWCEYTGMT-YQQYQGDGWHQAIHPDDRQH---TLTLWRQTCAMGEPFEIEYRL--KHGQ 712 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ + + G + + + + + + ++ ++ GI Sbjct: 713 TGTYRWFLGRALPVRDETGQILKWFGTCTDIEEQKRIEAALRESQERTSVLMNSSIIGIN 772 Query: 467 IINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQ 523 I EG I+ N + GY ED+ E+ + L Sbjct: 773 I--AEGEQIVDANDTFLYMTGYTREDLRTGKINWMQMTPPEYLDRTVEAHQELAAKRLMT 830 Query: 524 TLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 EK + K+ L + + I + D S ++ + + Sbjct: 831 PYEKEYVC--KDGSRLPVLVGSIGLEHNPLQNIAFVLDNSARQELEQR------------ 876 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K F++ SHE+R PLTA+ + ++ Q + + + N + +V Sbjct: 877 --KDAFISMASHELRNPLTALKMQTSLLHRQL---VKQGLQAPALSSMQTQINKITRLVE 931 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLD+SKI++G++ E V LD + E + IL+ + ++ + D Sbjct: 932 DLLDVSKIQAGRLEYQQEIVDLDALLREIADTMLHTHPSHTILLHGTVGTSL---MGDRD 988 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + Q+ N+LSNAI ++P + + + + V + VRD G+G+ + +K F + Sbjct: 989 RLGQVFTNLLSNAIKYSPGAETVEMELSASEEA-VTILVRDHGLGIPREQRDKIFDRFYR 1047 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + +Q G G+GL + +V + G + S KG+ ++ P Sbjct: 1048 VTDPKQKAIPGLGMGLYIVAEIVKHHGGTIMVESEMGKGSTFQVTLP 1094 Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats. Identities = 43/509 (8%), Positives = 118/509 (23%), Gaps = 32/509 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W GY+ ++ G + G + ++ + + Sbjct: 267 LVWAGRPDGYVDFYNQRWRDYTGLSTEEAQGEGWMQCTHPEDRQRVLETWQRAVQTGSPY 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L T Y + A P + G K ++ Sbjct: 327 EAEQRLRHCT-TGQYRWFLMQATPYRDARGTILKY--IGTCTDIDEQKQVEERIKASEEN 383 Query: 204 FSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + L E + D F+Q+ ++ + + Sbjct: 384 WRVLAETVPQLVWTTRPDGLSDYFNQRFRDYTHATWEQLYGYGWSQFLHPEDYERTLAER 443 Query: 262 LTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314 S P + + +++ + + ++ Sbjct: 444 AHSFRRGTPYEVAYRFREGQTGCYRWFLARAMPVRDETGQILKWFGTCTDIDEQKRTEQR 503 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E + P + G Y N + T ++ + P Sbjct: 504 LKESEERFQVLAETVPQLVWTTRPDGQFEYTNQHWCDYTGLT-LEQTQSDQWAQLPFIHP 562 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ + + T + ++ + + G Sbjct: 563 DDQEDIRARW---QHALETGDMYEHEGLLKHAHTGEYRWFLTRAMPVRDEAGQILKWCGT 619 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + + + L +++A + I+ +G+ N+ + G + Sbjct: 620 CTDIHDKKRAEAE-------LRVLIDAIPQHVWILGPDGLSEYGNQRWCEYTGMTYQQYQ 672 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSS 552 + + + + ++ E + + + Sbjct: 673 GDGWHQAIHPDDRQHTLTLWRQTCAMGEP--FEIEYRLKHGQTGTYRWFLGRALPVRDET 730 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKI 577 + T DI E K+ + L +++ Sbjct: 731 GQILKWFGTCTDIEEQKRIEAALRESQER 759 Score = 114 bits (285), Expect = 8e-23, Method: Composition-based stats. Identities = 38/515 (7%), Positives = 122/515 (23%), Gaps = 38/515 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + ++ +G + L H +++ Sbjct: 32 VDDVDTIVYANQCAQALTRASPEAFLGHSFWRGAPHLVSTALYHAMRTVRQTREPTEVEY 91 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-- 206 + P+ T L+V + G + + + L++ + Sbjct: 92 ISPVTRTRLHVQLA-------------PTAGGLLLQFHEKQEPIRSQKTFFLEEHLTADV 138 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKYP 260 L + G + E + ++P +++ + + + + + + Sbjct: 139 LVNLYVGVGVLTPEGILLDINEAPLADTQIRREEVIGQPFTETPWWSFYPASQQQLREAI 198 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 S+ ++ + H + ++ + + + Sbjct: 199 TRASKGETVRFETVIHPREGMDLHLEATITPHRDVGHRVEYLVYVGTDITARKRAEAE-- 256 Query: 321 LTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 +D P + + N + T + + + G + Sbjct: 257 -LHALIDAIPQLVWAGRPDGYVDFYNQRWRDYTGLSTEEA-QGEGWMQCTHPED---RQR 311 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 ++ + A RL + + G + + Sbjct: 312 VLETWQRAVQTGSPYEAEQRLR--HCTTGQYRWFLMQATPYRDARGTILKYIGTCTDIDE 369 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + +++ + E + +G+ N+ E + ++ Sbjct: 370 QKQVEERIKASEENWRVLAETVPQLVWTTRPDGLSDYFNQRFRDYTHATWEQLYGYGWSQ 429 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----Y 554 FL E + + + + Sbjct: 430 FLHPEDYERTLAERAHSFRRGTP--YEVAYRFREGQTGCYRWFLARAMPVRDETGQILKW 487 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T DI E K+ + +L +++ + + + Sbjct: 488 FGTCTDIDEQKRTEQRLKESEERFQVLAETVPQLV 522 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 73/281 (25%), Gaps = 36/281 (12%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + ++ P FFV + YAN LT+ + + Sbjct: 1 MAGEEQTRRITAASRDTLLTILETLPDAFFVVDDVDTIVYANQCAQALTRASPEAFLGHS 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P L + R R P + Sbjct: 61 FWRGA----PHLVSTALYHAMRTVRQTREPTEVE----------------YISPVTRTRL 100 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIE---VMQLCS-ILEATSDGIAIINREGIILSTNR 479 + P G + + + L + +L G+ ++ EGI+L N Sbjct: 101 HVQLAPTAGGLLLQFHEKQEPIRSQKTFFLEEHLTADVLVNLYVGVGVLTPEGILLDINE 160 Query: 480 AVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 A E+++ +PF + + +T +T+ T+ +E Sbjct: 161 APLADTQIRREEVIGQPFTETPWWSFYPASQQQLREAITRASKG---ETVRFETVIHPRE 217 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 L L I DI+ K+ + +L Sbjct: 218 GMDLHLEATITPHRDVGHRVEYLVYVGTDITARKRAEAELH 258 >gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 375 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 5/364 (1%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 Q +LEA D + I+N+ G I+ N KLFG+ E++L +P + + Q Sbjct: 6 EEQFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGHHP 65 Query: 511 HYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQ 566 + + + G K+ + I + L +T + D ++ K+ Sbjct: 66 SHRDGYFGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLRTPEGLLVTSAIRDTTDRKR 125 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L E+ + K FLA +SHE+RTPL IIGF+E + + + GP+ N + EY Sbjct: 126 IERSLQEKNAELERANQAKDRFLASMSHELRTPLNGIIGFAEFLADGKPGPV-NGKQKEY 184 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I G +L ++ND+LD+ K+++GK+ LH +++A+ E + V+ A+ KRI + Sbjct: 185 LEDILNGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIGV 244 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 A I D + KQ+ N+LSNAI FT GGQ+ + + L VRDTG+ Sbjct: 245 HVEIAPGFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLSVRDTGI 304 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++++ F Q+ R GTGLGL L + +V+ G + S +G+ + Sbjct: 305 GIKPEDIQRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFSV 364 Query: 807 IFPL 810 PL Sbjct: 365 TLPL 368 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 18/154 (11%), Positives = 38/154 (24%), Gaps = 34/154 (22%) Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL--------- 366 + E E ++ P V G + N L + + + + Sbjct: 4 KAEEQFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGH 63 Query: 367 -----STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 P + A + R D T L ++ Sbjct: 64 HPSHRDGYFGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLR----------------- 106 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 PE + + D + +R ++ + +L Sbjct: 107 --TPEGLLVTSAIRDTTDRKRIERSLQEKNAELE 138 Score = 41.2 bits (95), Expect = 0.79, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 46/155 (29%), Gaps = 19/155 (12%) Query: 66 NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--- 122 L +E F ++ G + ++ + K G +++G + + Sbjct: 1 MTLKAEEQFRELLEAAPDAMV-IVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQR 59 Query: 123 ----DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 H D + +GT P++++ P+ + Sbjct: 60 FRGHHPSHRDGYFGDPHVRPMGA--SMDLYGLRKDGT--EFPVEISLSPLRTPE------ 109 Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G + R D + + + L +K + L + Sbjct: 110 -GLLVTSAIRDTTDRKRIERSLQEKNAELERANQA 143 >gi|298251695|ref|ZP_06975498.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297546287|gb|EFH80155.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 972 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 106/732 (14%), Positives = 226/732 (30%), Gaps = 40/732 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W + GY+ ++ G + G + + T + Sbjct: 268 VWTMRPDGYIDYSNQRWLDYTGLSTEQAQGDGWIQCLHPDDQQRIGDAWQMSRETGTPFE 327 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 T Y A+P+ + + + FG + L Sbjct: 328 TEQRLRHGTTGAYHWFLARAMPMRDKTGQII--KWFGTCTDIHDKKQAEDEIRVLVDAIP 385 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 HL IK+ S E + L + + + + Sbjct: 386 HLVWIKRPDGSAEYANQR--WRDYTNMTAEQAQGDGWLHAIHPDDQQRVLEGWQRSVQTG 443 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT--- 322 E H ++ ++ + + Sbjct: 444 MPYEAELRMRHGTTGEYRWFLVRAMLHKDAQGTPLKWFGTCTDIDDRKRVEHQLKESWEN 503 Query: 323 -PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + P + G++ Y + + T + + D++ Sbjct: 504 WRVLAETVPQFVWTTQPDGSVEYWSQRWYDYTGSSPEQALGQR------WNQFLHPDDDE 557 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + ++ + + G + D Sbjct: 558 STLTIWRHALEAGESYEIEYRLKEGQTGEYRWFLTRGMPVRDETGQILKWFGTCTDIEDQ 617 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + + + ++ + GI +I E I+ N A + GY ED+ + Sbjct: 618 KRIETALRQSQERASILMNSNIIGINVIEGE-QIVDANDAFLHMTGYTREDLRARHMNWL 676 Query: 501 L--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557 E+ + EK + K+ L + + L +++ Sbjct: 677 HMTAPEYLDRTCEAHQELAAQQSLTPYEKEYVC--KDGSRLPVLVGGVALEHHPRQAISY 734 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D S K+ + + K F++ SHE+R PL A+ + + +++ Sbjct: 735 VLDNSARKELEQR--------------KDAFISMASHELRNPLAALKLQA-TLLHRQLAR 779 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G + + N V +V +LLD+SKI++G++ E V+LD + E +Q Sbjct: 780 QGLEASAPALSRMQTQINTVTRLVEELLDVSKIQAGRLEYIREAVNLDALLREVADTMQQ 839 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +++R ++ D + Q+ N+LSNAI ++P + + + T + V Sbjct: 840 IKTTHTVVVR---GATFCSLVGDKDRLGQVFTNLLSNAIKYSPDARTVEMELSATEDA-V 895 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RVRD G+G+ + +K + F + +Q G G+GL + +V + G + S Sbjct: 896 TVRVRDHGLGIPQEQRDKIFERFYRAVGPRQPTIPGLGMGLYIVAEIVKGHGGTITVDSA 955 Query: 798 PAKGTLIEIIFP 809 KG+ + P Sbjct: 956 AGKGSTFTVTLP 967 Score = 113 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 43/519 (8%), Positives = 125/519 (24%), Gaps = 47/519 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D + + G ++G + L K+ Sbjct: 29 LFVLDDASTIIYANASAQALTGVAPETLVGNSFWRCAPQLVSTALYQAIQKTKQTRALTE 88 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + P+ G+ + + P G + + ++ + Sbjct: 89 VQYVSPVTGS----WLHVHLSPT----------AGGLTLQFHEMEAPAHRQEIVHQRGSL 134 Query: 206 HLH---EIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKT 256 + ++ G + + + D+ H+R + V + + Sbjct: 135 SMDVLKNMRAGIAFLTPDGIVLDLNEVLLDDAHIRREEVVGNPLVEGPWCSSSPASQAQL 194 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 S ++ + H + + + + + + Sbjct: 195 RAAIARASMGETVRFETLVHPREGMELSLDVAITPHSDAEHHIEYLVLAGVDITTRKRAE 254 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 +D P + G + Y+N +L T + + G + L + Sbjct: 255 AE---LHALIDAIPQQVWTMRPDGYIDYSNQRWLDYTGLSTEQA-QGDGWIQCLHPDDQ- 309 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + R T RL ++ + + G Sbjct: 310 --QRIGDAWQMSRETGTPFETEQRLR--HGTTGAYHWFLARAMPMRDKTGQIIKWFGTCT 365 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + D + + ++ +++A + I +G N+ E Sbjct: 366 DIHDKKQAE-------DEIRVLVDAIPHLVWIKRPDGSAEYANQRWRDYTNMTAEQAQGD 418 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSC- 553 + + + + + + E + + + Sbjct: 419 GWLHAIHPDDQQRVLEGWQRSVQTGMP--YEAELRMRHGTTGEYRWFLVRAMLHKDAQGT 476 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + T DI + K+ +++L + + + F+ Sbjct: 477 PLKWFGTCTDIDDRKRVEHQLKESWENWRVLAETVPQFV 515 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 31/381 (8%), Positives = 99/381 (25%), Gaps = 19/381 (4%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + + + L + ++ I++ S + + ++ ++ T Sbjct: 12 PESHETLLTILEALPGALFVLDDASTIIYANASAQALTGVAPETLVGNSFWRCAPQLVST 71 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 Y + + + E + + + F + H Sbjct: 72 ALYQAIQKTKQTRALTEVQYVSPVTGSWLHVHLSPTAGGLTLQFHEMEAPAHRQEI--VH 129 Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + +L+ + + F+ G + N L + + + + + Sbjct: 130 QRGSLSMDVLKNMRAGIAFLTPDGIVLDLNEVLLDDAHIRREEVVGNPL-VEGPWCSSSP 188 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + ++ + S + +H L++ ++ Sbjct: 189 ASQAQLRAAIARASMGETVRFETLVHP---REGMELSLDVAITPHSDAEHHIEYLVLAGV 245 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + + L ++++A + + +G I +N+ G E Sbjct: 246 DITTRKRAEAE-------LHALIDAIPQQVWTMRPDGYIDYSNQRWLDYTGLSTEQAQGD 298 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + L + + E+ T + + Sbjct: 299 GWIQCLHPDDQQRIGDAWQMSRETGTPFETEQRLRHGT-TGAYHWFLARAMPMRDKTGQI 357 Query: 554 --YSLTMHDISEWKQEKNKLS 572 + T DI + KQ ++++ Sbjct: 358 IKWFGTCTDIHDKKQAEDEIR 378 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 5/152 (3%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + +S + +F W G ++ S+ G+ + + Sbjct: 485 TDIDDRKRVEHQLKESWENWRVLAETVP-QFVWTTQPDGSVEYWSQRWYDYTGSSPEQAL 543 Query: 115 GMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G R + I L+ ++ T Y +P+ Sbjct: 544 GQRWNQFLHPDDDESTLTIWRHALEAGESYE-IEYRLKEGQTGEYRWFLTRGMPVRDETG 602 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + FG ++ ++ S Sbjct: 603 QI--LKWFGTCTDIEDQKRIETALRQSQERAS 632 >gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp. RS-1] Length = 1039 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 128/753 (16%), Positives = 266/753 (35%), Gaps = 60/753 (7%) Query: 99 SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IEGTN 156 + + + ++ +H L+R + G GT Sbjct: 298 GQRFARADSYCTAVLESCTPVGINHAGQSAWRDHRCYALQRMEAYIGAPVRMRGVTVGTL 357 Query: 157 LYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + P + + + G + A + +++F+ L + Sbjct: 358 CFASATSRQTPFTDGDYDLIRLMAQWIG---SEQERLQTEAALRESEERFALLASVTTEG 414 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + ++ + + + L + + + + L + P + Sbjct: 415 VIISEQGIIVDANAAASTLLGCPLEQLRGRSVFEFTTPEGREKVAHALATGYDC-PYEVL 473 Query: 275 FHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 I+ + + + + A E + + Sbjct: 474 ARRIDGTLFPAEVTGRNIPYHGRTARVTTIRDMSRQRLAEAALRASEERFRQLAENVNQV 533 Query: 333 FFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 F++ + + Y NP++ + L +A L D + + Sbjct: 534 FWICTPALDQILYVNPAYERIWGRSCDSLYAQPAS---LFEAIVLEDRERVLALHNAEYH 590 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI- 449 R + I+ + + F N+ I + R + ++ Sbjct: 591 RGY----SIEFQIRRDDGQPRWILTRAFPVMNEAGVIYRIAAISEDVTGRRQAEEELRAT 646 Query: 450 -------------EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++ +IL+A+S+ IA++ +G L+ NR +FG E L Sbjct: 647 LAALEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQALGHR 706 Query: 497 FTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSS 552 + + Y+ +L QT+ + + +++ L++ + Sbjct: 707 LSDMRAAIRWIFDDADELYVRMCHALQDTQTIFRERVSQRKPQQRELAIFSSPVWTANQT 766 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 D++ + + KS+F+A VSHE+RTPLT+I G+ +++ Sbjct: 767 HLGRLFVFRDVTHERAVE--------------RMKSEFVAMVSHELRTPLTSIKGYVDML 812 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + GPL + E + + + +L ++NDLLD+S+IE+GK++LH P+ L + + Sbjct: 813 LDGDAGPLADEHQ-ELLRIVKSNADRLLLLINDLLDMSRIEAGKLSLHRIPLDLRPLIRQ 871 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++ + + K+ + P I D QI N+LSNAI +TP G++ Sbjct: 872 VAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFHQILTNLLSNAIKYTPPNGEM 931 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I T + + V+DTG+GMT E + F + N GTGLGL + +++V Sbjct: 932 TIRLTAEPP-WLCITVQDTGIGMTPEEQDHIFDRFYRARNRATRETGGTGLGLAITRSLV 990 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + + G+ + S P KG+ + PL + + HD Sbjct: 991 ELHDGRITVESQPGKGSTFRVYVPLLEYADQHD 1023 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 38/381 (9%), Positives = 92/381 (24%), Gaps = 36/381 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I G + + + +G ++ G + + + + + L + Sbjct: 417 ISEQGIIVDANAAASTLLGCPLEQLRGRSVFEFTTPEGREK---VAHALATGYDCPYEVL 473 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 I+GT + +P + R + + A + +++F L Sbjct: 474 ARRIDGTLFPAEVTGRNIPYHGRTARVT------TIRDMSRQRLAEAALRASEERFRQLA 527 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-----T 263 E + D +P SL A + + E + Sbjct: 528 ENVNQVFWICTPALDQILYVNPAYERIWGRSCDSLYAQPASLFEAIVLEDRERVLALHNA 587 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL-- 321 + + + N + + + + +E Sbjct: 588 EYHRGYSIEFQIRRDDGQPRWILTRAFPVMNEAGVIYRIAAISEDVTGRRQAEEELRATL 647 Query: 322 ----------------TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 +D + G N F + + + Sbjct: 648 AALEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQALGHRL 707 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 D + + M + T R+ + ++ LA+ P ANQ Sbjct: 708 SDMRAAIRWIFDDADELYVRMCHALQDTQTIFRERVSQ-RKPQQRELAIFSSPVWTANQT 766 Query: 425 PENMPQNGIEPEDVDTRINKR 445 ++ + + + R +R Sbjct: 767 --HLGRLFVFRDVTHERAVER 785 Score = 40.0 bits (92), Expect = 1.7, Method: Composition-based stats. Identities = 28/246 (11%), Positives = 67/246 (27%), Gaps = 15/246 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-----SDILHIDP-NNHIGDLLKRQNTWY 144 G ++ G A + +G RL D+ D + L+ T + Sbjct: 680 PDGTFLTVNRRFFDMFGTTAEQALGHRLSDMRAAIRWIFDDADELYVRMCHALQDTQTIF 739 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + + + P+++ N+ G + V R RA+ + + Sbjct: 740 RERVSQRK---PQQRELAIFSSPVWTANQTHLGR-----LFVFRDVTHERAVERMKSEFV 791 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + K D+ P ++ + + A + +L + + Sbjct: 792 AMVSHELRTPLTSIKGYVDMLLDGDAGPLADEHQELLRIVKSNADRLLLLINDLLDMSRI 851 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-ENLTP 323 E L + + ++ P SA G Sbjct: 852 EAGKLSLHRIPLDLRPLIRQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFH 911 Query: 324 ETVDKC 329 + + Sbjct: 912 QILTNL 917 >gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 1046 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 113/393 (28%), Positives = 198/393 (50%), Gaps = 10/393 (2%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + + T N+ K + +L IL++ S+ + ++ E I+ N+ Sbjct: 343 GDDELSRLSKGINQTLDRLRTTSNEFKAQEHEKKL--ILDSLSELVVFMDSELKIIWLNK 400 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A G + D++ + + + + ++L + E + T++ K+ Sbjct: 401 AALDHMGMKINDVIGRHYQDMYILYKENPGKSPVLKVLESGNEEFGEVV----TQDGKIW 456 Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 ++ I K T DI+ ++ + KL AK AE+ ++ KS+FLA VSHE+R Sbjct: 457 TVTAIPIKNEDGRITGILKTGLDITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELR 516 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL +IIGFS+++ + FG L N + Y N I SG +L ++ND+LD+SK+E+GKM L Sbjct: 517 TPLNSIIGFSDILIEKVFGEL-NEKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMEL 575 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 H+ S+D E +++ K + + + + + AD + QI N++SNAI Sbjct: 576 HYSEFSIDPVFEEVKAVLFPLIQAKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIK 635 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FTP+GG++ + S ++ V DTG+G++ + K +PF Q+ S + GTGLG Sbjct: 636 FTPNGGKVSVYCK-ESGNRALISVIDTGIGISAEDQVKLFQPFTQLDASTSRQYCGTGLG 694 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L L K +V+ + G ++ S P KG+ PL Sbjct: 695 LALVKKIVNLHQGDIWVESDPGKGSNFTFALPL 727 Score = 44.2 bits (103), Expect = 0.087, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 9/130 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147 +D+ + +++ +G +IG D+ + +P + +L+ N +G+ Sbjct: 389 MDSELKIIWLNKAALDHMGMKINDVIGRHYQDMYILYKENPGKSPVLKVLESGNEEFGEV 448 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G + A+PI + + +G G I R + ++ + Sbjct: 449 VT--QDGKIW----TVTAIPIKNEDGRITGILKTGLDITAHRRSEEKLIQAKLEAEEANN 502 Query: 206 HLHEIKKGHS 215 E S Sbjct: 503 SKSEFLANVS 512 >gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum ATCC 27405] gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 2360] gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM 1313] Length = 902 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 114/503 (22%), Positives = 199/503 (39%), Gaps = 23/503 (4%) Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E T++ V G + N + LT Y S + I ++ Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIING 207 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + P S+R + + + ++ + E M + Sbjct: 208 VNREPEPD-PYERVLSERKTVGLRKNTMLVSKDG-TLRYVSASTAPIKSSDREIMGVVVV 265 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + R + K++ +L +E + I + + G I N +++ GY +++ Sbjct: 266 FRDITRIRKAEEKLQ----KLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFDEVK 321 Query: 494 RKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K F + LE+N + + S ++ +K + + S Sbjct: 322 GKSLFFMELEENGEEKCKDMIQAVFSGKEWRS---EIRHKSKNNVVFWEYAYYSPIINSE 378 Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+E K L AK+ AE + KS+FLA +SHEIRTPL IIG + Sbjct: 379 GVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTN 438 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + E N ++ L+L ++ND+LD SKIE+GKM L + Sbjct: 439 LTLQTEL----TDEQRENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFDFFNLL 494 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ--- 724 + + ANEK + + + IPRIL D ++Q+ N++SNA+ FT G Sbjct: 495 EKTYKAHIVQANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIGEVRID 554 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + I + ++ V DTG+G+ ++ K F Q+ +S + GTGLGL ++K + Sbjct: 555 VDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQL 614 Query: 785 VDANMGKFYIFSTPAKGTLIEII 807 V+ G+ ++ S KG+ Sbjct: 615 VEMMGGEIWVESQKGKGSTFYFT 637 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 16/238 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-------IDPNNHIGDLLKRQN 141 D G + +++ + G + IG L +V I++ DP + K Sbjct: 169 TDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIINGVNREPEPDPYERVLSERKTVG 228 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T L +GT Y + + PI S +RE G + ++L Sbjct: 229 -LRKNTMLVSKDGTLRY--VSASTAPIKSSDREIMGV--VVVFRDITRIRKAEEKLQKLS 283 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + I + + + + + ++V + ++ ++ + + + Sbjct: 284 QAVEQSPGI--IVMADTRGNIEYVNPRFTEVTGYSFDEVKGKSLFFMELEENGEEKCKDM 341 Query: 262 LTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + S + + N + + Y+ + N+ YL + E Sbjct: 342 IQAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSE 399 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 49/180 (27%), Gaps = 8/180 (4%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + + + ++++ +E + + +E + V++ Sbjct: 229 LRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGVVVVFRDITRIRKAEEKLQKLSQAVEQ 288 Query: 329 CP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P I + GN+ Y NP F +T Y + G S + + K ++ Sbjct: 289 SPGIIVMADTRGNIEYVNPRFTEVTGYS----FDEVKGKSLFFMELEENGEEKCKDMIQA 344 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + R + N + + + ++ + Sbjct: 345 VFSGKEWRSEIRHKS---KNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSENL 401 >gi|298241186|ref|ZP_06964993.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554240|gb|EFH88104.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1221 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 104/737 (14%), Positives = 238/737 (32%), Gaps = 46/737 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143 F W G + ++ L + + G ++ + Sbjct: 514 FVWIAGPDGSITYNNQRLIDFLAMTHEQAEGAGWMAGVHPDDRQRVWEAWQTSIETGVPY 573 Query: 144 YGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +GT Y + +P + + G + L Sbjct: 574 --EVEHRLQDGTSGAYRWFLVRGVPQRNAQGTILHW--VGTCTDIHDKKQAEEELRALID 629 Query: 203 KFSHLHEI--KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 L G+ +++ ++ S L + + + Sbjct: 630 AIPQLVWTGRPDGYRDSFNQRWRDYTGLSTEG----AQGEGWLQCLHPEDRQRVLSVWQR 685 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + E H ++N S + ++ ++ Sbjct: 686 AVQTGGVYEIELRLRHGTTGEYRWFLARAMPVRNESGQILKWFGTSTDIEEQKRAEQQLK 745 Query: 321 LTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E + P + ++ +G L Y N + T + + ++ P Sbjct: 746 ESEENWRVLAETLPQFVWTMFPNGRLDYLNQRWCDYTGFTP-EHMQSDRWAHLQFIHPDD 804 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + N + RL Q + ++ + + G Sbjct: 805 REGNRA-LWQQTLETGEPFESKHRLRNGQT--GAYRWVLARAMPVRDETGQIVKWFGTGT 861 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + D + + + + ++ + GI + + I+ N + ++ GY ED+ Sbjct: 862 DIEDQKRMEEALRQSQERASVLMNSNIIGIFLAEGD-QIVDANDSFLRMTGYTREDLRTG 920 Query: 496 PFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + + E+ + + EK L K+ + + +S Sbjct: 921 NMSWIRMTSPDYLARTRQAQQELDTQQYLEPYEKEYLC--KDGSCFPVLVGSVAFQHNSR 978 Query: 554 YSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 ++ D S K+ + + K DF++ SHE+R PL A+ ++ + Sbjct: 979 QCISFVLDNSARKELEQR--------------KDDFISMASHELRNPLAALKMQTQ-LVR 1023 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +R + ++ + ++ +LLD+SKI++GK+ E V LD + E Sbjct: 1024 KRLEKQSHHEAATALFRMEGPVKQLERLIGELLDVSKIQAGKLEYRQETVDLDALLHEVA 1083 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +Q + I++R + +++ + D + Q+ N++SNAI ++P + + + Sbjct: 1084 DTMQQLSTTHAIVVRGAAPSSL---VGDKDRLGQVFTNLISNAIKYSPGAEMVEMDLDAS 1140 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 I+RV D G+G+ + +K + F + +Q G G+GL + +V + G Sbjct: 1141 PE-TAIIRVHDHGLGIPQEQCDKIFERFYRATGPKQKAIPGLGMGLYIVAEIVKRHGGAI 1199 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG+ + P Sbjct: 1200 TVDSEVGKGSTFTVTLP 1216 Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 49/495 (9%), Positives = 124/495 (25%), Gaps = 33/495 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKR---QNTWYGK 146 G + +I++ +++G L D+ + H+ + R + Sbjct: 151 PDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDLVVQEHLRAAIARARQGEIVRFE 210 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P T+L + I + +++ G + L Sbjct: 211 ARIHPR--TDLSLDILMTITAHRDASQQIEYLICAG--RDITERKHAEDELRVLIDAIPQ 266 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L + + +E + S L + + + ++ Sbjct: 267 LVWMAR--PDGSREYSNRRWCDSTDMTAEQYQGDGWLQAIHPDDQQRILEVWQRAVQTDR 324 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324 E H +++ ++ ++ + E Sbjct: 325 PYETELRLRHGTTGAYRWFLVRAMPYKDDQGTILKWFGTCTDIEEQKRAEQKLKESEENW 384 Query: 325 --TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P + S G++ Y N + + + G S L L + + Sbjct: 385 RVLAETVPQLVWTTSPDGSVEYWNQRWYDYSGSSPEHALGH--GWSQFLHPDDL--EHTL 440 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + RL Q ++ + + G + D + Sbjct: 441 TVWHHALASGEAYEIEYRLRDDQT--GAYRWFLARGTPVRDEAGQIVKWFGTCTDIHDKK 498 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + L +++A + I +G I N+ + E + + Sbjct: 499 QAEAE-------LRVLIDAIPQFVWIAGPDGSITYNNQRLIDFLAMTHEQAEGAGWMAGV 551 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + + + + +E T + + + T Sbjct: 552 HPDDRQRVWEAWQTSIETGVPYEVEHRLQDGT-SGAYRWFLVRGVPQRNAQGTILHWVGT 610 Query: 558 MHDISEWKQEKNKLS 572 DI + KQ + +L Sbjct: 611 CTDIHDKKQAEEELR 625 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 61/534 (11%), Positives = 139/534 (26%), Gaps = 46/534 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWY 144 + +D + + ++ G C ++ + + + Sbjct: 29 VFVVDDTETIVYANASAQTLSRTTREEVCGTSLWCGAPHLVSPSLYQAVHKAKQTREP-T 87 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + P + + ++ P G F H N + R ++ + Sbjct: 88 EVEYVSPATNS----WLHVSLSPTD------EGLALF--FHKNLEPPHFQDALSRNEQMY 135 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E ++ + HLR + V + L +++ Sbjct: 136 RDLLESFSDGVTIVTPDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDLVVQEHLR 195 Query: 262 LTSEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + E F + T ++ + EYL Sbjct: 196 AAIARARQGEIVRFEARIHPRTDLSLDILMTITAHRDASQQIEYLICAGRDITER--KHA 253 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E+ +D P ++ G+ Y+N + T + + + G L + + Sbjct: 254 EDELRVLIDAIPQLVWMARPDGSREYSNRRWCDSTDMTA-EQYQGDGWLQAIHPDDQQRI 312 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + R+ +T L + + G + Sbjct: 313 LEVWQ-----RAVQTDRPYETELRLRHGTTGAYRWFLVRAMPYKDDQGTILKWFGTCTDI 367 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++K++ + E + + +G + N+ G E L + Sbjct: 368 EEQKRAEQKLKESEENWRVLAETVPQLVWTTSPDGSVEYWNQRWYDYSGSSPEHALGHGW 427 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSC--Y 554 + FL + L+ +E T + R + + Sbjct: 428 SQFLHPDDLEHTLTVWHHALASGEAYEIEYRLRDDQTGAYRWFLARGTPVRDEAGQIVKW 487 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEK-------------ESSHKSDFLARVSHE 595 T DI + KQ + +L + + DFLA ++HE Sbjct: 488 FGTCTDIHDKKQAEAELRVLIDAIPQFVWIAGPDGSITYNNQRLIDFLA-MTHE 540 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 85/274 (31%), Gaps = 22/274 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N ++ P F V + YAN S L++ + + Sbjct: 1 MSNAKQTKRVTPGSRETLLHMLETLPDAVFVVDDTETIVYANASAQTLSRTTREEVCGTS 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P L + + V + R + + L ++ P ++ Sbjct: 61 LWCGA----PHLVSPSLYQAVHKAKQTREPTEVE----YVSPATNSWLHVSLSPTDE--- 109 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 ++++ + + +LE+ SDG+ I+ +G++L N+ Sbjct: 110 -----GLALFFHKNLEPPHFQDALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQRPLA 164 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLR 542 E ++ P T ++ V+ +L ++ + + + + L + Sbjct: 165 DAHLRREQVVGTPLTDLPAWSSDLVVQEHLRAAIARARQGEIVRFEARIHPRTDLSLDIL 224 Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + I + DI+E K +++L Sbjct: 225 MTITAHRDASQQIEYLICAGRDITERKHAEDELR 258 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 32/203 (15%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L +LE D + +++ I+ N + L E++ + Sbjct: 14 SRETLLHMLETLPDAVFVVDDTETIVYANASAQTLSRTTREEVCGTSLWCGAPHLVSPSL 73 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + +E ++ + L + + +L H E ++ Sbjct: 74 YQAVHKAKQTREPTEVEYVSPATN---SWLHVSLSPT----DEGLALFFHKNLEPPHFQD 126 Query: 570 KLSHAKKIAEKESSHKSDFLARV----------------SHEIR------TPLTAIIGFS 607 LS +++ SD + V +H +R TPLT + +S Sbjct: 127 ALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQRPLADAH-LRREQVVGTPLTDLPAWS 185 Query: 608 EVI--KNQRFGPLGNPRYIEYAN 628 + + + R E Sbjct: 186 SDLVVQEHLRAAIARARQGEIVR 208 >gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1120 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 126/635 (19%), Positives = 240/635 (37%), Gaps = 27/635 (4%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 A G + + +S+ E R+ + L Sbjct: 30 RVEIAEAGGSAEARVLLLAAHNELTNSAEEMASAK--PFDCAFLDYRLPDG-DGLKLVKT 86 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRN 307 ++ +K L + + + + K L ++ Y + Sbjct: 87 IREAGIKIPLIVLTGQGDEQIAVELMKAGASDYIAKAKLSPENLSRSLQNAIRIYRAETK 146 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366 S E E ++ + + N Y N L + + + Sbjct: 147 ATQASQKLKESEERYRLVLEGANDGIWDWDLSKNEVYWNDRLLEIVGLSRSEF---GSAI 203 Query: 367 STLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 D D + + + + T RL + + T + NQ Sbjct: 204 EAFFDRLHPEDYESTRKALEAHLETGTEYNVEFRLL---HSSDVYRYCTGRGKAQRNQQG 260 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + GI + D ++ + +E E QL I+ +A+ ++E + ++ + Sbjct: 261 KALRMAGIISDISDRKLAEAALERERQQLRQIIACVPVPMAMFDKEMRYQAHSQRWLTQY 320 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 + IL + + L + P L+ ++ E ++ + LR I Sbjct: 321 NLEGQSILNRSYYEVL-PDIPDRWRKMHERSLTGEVVSVSED--AWKREDGSTVFLRWAI 377 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + +S+ +L A++ A + S KS FLA +SHEIRTP+ ++G Sbjct: 378 HPWYAPDGEVGGIVLVSDRIN---ELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLG 434 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++ EYA I RS +L ++ND+LD SKIE+G+M L LD Sbjct: 435 MAQLLLRLSLEAKP----REYAQTIYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLD 490 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +V A EK + + +++P ++ D +KQI LN+++NAI FT G Q Sbjct: 491 VCIESMVEMVVATAEEKGLELNVLIESSVPRQLQGDPGRLKQILLNLVNNAIKFTDRG-Q 549 Query: 725 IIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +++ + S + ++I VRD+G+G++ +K + F Q+ S + GTGLGL + Sbjct: 550 VLVRVSLKSSTVDRKLIFSVRDSGIGISPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVIC 609 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 K +V+ G+ + ++ KG+ PL P Sbjct: 610 KQLVEMMGGEIGVRTSVGKGSNFWFTIPLQMQPQP 644 Score = 45.8 bits (107), Expect = 0.035, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 62/246 (25%), Gaps = 10/246 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNHIGDL-LKRQNT 142 W+ D ++ L + +G + D + + L+ Sbjct: 172 IWDWDLSKNEVYWNDRLLEIVGLSRSEFGSAIEAFFDRLHPEDYESTRKALEAHLETGTE 231 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + L +++Y ++ + R GI+ A +R + Sbjct: 232 YNVEFRLLHS--SDVYRYCTGRGKAQRNQQGK--ALRMAGIISDISDRKLAEAALERERQ 287 Query: 203 KFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDV--LKTEKY 259 + + ++ ++ Q ++ + YY D+ + + Sbjct: 288 QLRQIIACVPVPMAMFDKEMRYQAHSQRWLTQYNLEGQSILNRSYYEVLPDIPDRWRKMH 347 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + E ++ + + + + E + + + E Sbjct: 348 ERSLTGEVVSVSEDAWKREDGSTVFLRWAIHPWYAPDGEVGGIVLVSDRINELVEAREAA 407 Query: 320 NLTPET 325 Sbjct: 408 IEASRV 413 >gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 946 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 149/775 (19%), Positives = 269/775 (34%), Gaps = 59/775 (7%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----ID 128 VFD T+R G L+ I + L K K + V D Sbjct: 59 AVFDAKDATLRMVSK---EG-LRVIGQPLAKMQWQPREKTL--HAWKVLYPDGETPVPFD 112 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVN 187 I + T + +G+ +P+ L A PI R E G + Sbjct: 113 ELPSIRTIRTGHVTVEEEYVFQRADGS--KIPVILNAGPIRGDREEEILGALISWL--DI 168 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLT 244 K + +F E + + Sbjct: 169 SERKKLDEQLKTSEIRFRSTFEQAAVGMAHLDMEGRFLLVNRRLCEILGYSSDELTQRTL 228 Query: 245 EYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 H +D+ K L+ E ++ +H + +N E Sbjct: 229 REITHAEDLRKNLARIDQLMRGEIDRFSMEKRYHRKDGRIIWAMLTATLTRNEHGEPLFL 288 Query: 303 LSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSV 357 L+ + A E+L + P VY L Y +P+ + T Sbjct: 289 LAVVEDITRRKQDEAELHRREDLFRTLAENSPDVISVYDRDLLRVYVSPAIEMETGLSRD 348 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 D + A + + R+ T + + + Sbjct: 349 DLVGKTLRGLQAESAVYTQEMVDSFEEGVRRTFETGEQVTVDFTYLTTAGKRKFHQ-LRM 407 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + E I + + + + I +++E + DGI +++ L Sbjct: 408 APLRSPDGEVRQVMSISRDMTALKETEADLHIREEHYRALVENSPDGIVRYDKDLRYLYV 467 Query: 478 NRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-- 534 N +++ G P + I+ + L + + E L+ Q+ E G + Sbjct: 468 NPCFARMTGLPAQAIVGNKLGILGLSLEMQQRVAGAVREALATGQEQSCEIAWEGPREIK 527 Query: 535 --EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + + + DI++ Q K+ AE+ + KS+FLA + Sbjct: 528 LIDIRFVP---EVGRDSEMKTVLAVSRDITDLAQA-------KQEAERANRAKSEFLASM 577 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ IIG +E+ QR + +Y + +S + +L I+ND+LD+SKIE+ Sbjct: 578 SHEIRTPMNGIIGLTELALMQR----PKAKVRDYLGMVKQSADSLLGIINDILDLSKIEA 633 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G++ L S E + +++ A K I T +P + D ++QI +N+ Sbjct: 634 GRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTKIDPRVPASLFGDEGRLRQIFVNL 693 Query: 712 LSNAIHFTPSGGQIIISTTHTSN------EEVIL--RVRDTGVGMTNYELEKAMKPFGQI 763 +SNA+ FT +G + + T + V + +RDTG+G+ LE +PF Sbjct: 694 ISNALKFTEAGS-VSVQVTAEDHMDLAKPGPVEIIASIRDTGIGIPANRLESIFEPFDT- 751 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 ++ R GTGLGL + K ++D G+ + S P KG+ + + + P + Sbjct: 752 -GTRSTRHGGTGLGLTITKGLIDLMGGRITVKSRPGKGSTFSFSV-MLELAIPEE 804 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 31/323 (9%), Positives = 90/323 (27%), Gaps = 28/323 (8%) Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET---VDKCPIPFFVYS 337 Q K L+ E R + + + +D P V+ Sbjct: 3 GQEHKDHIIENLRARLAEYERRDQERREAERGWWGESHLDALKVLKNVMDYLPEGMAVFD 62 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIA-------------GGLSTLLDAPKLSDNNAIKPV 384 A + L + + + I L + P Sbjct: 63 ------AKDATLRMVSKEGLRVIGQPLAKMQWQPREKTLHAWKVLYPDGETPVPFDELPS 116 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + + + ++ E + + + + Sbjct: 117 IRTIRTGHVT-VEEEYVFQRADGSKIPVILNAGPIRGDREEEILGALISWLDISERKKLD 175 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +++ ++ S E + G+A ++ EG L NR + ++ GY +++ ++ Sbjct: 176 EQLKTSEIRFRSTFEQAAVGMAHLDMEGRFLLVNRRLCEILGYSSDELTQRTLREITHAE 235 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 + +++ ++ + K+ +++ + + D Sbjct: 236 DLRKNLARIDQLMRGEIDR-FSMEKRYHRKDGRIIWAMLTATLTRNEHGEPLFLLAVVED 294 Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583 I+ KQ++ +L + + + Sbjct: 295 ITRRKQDEAELHRREDLFRTLAE 317 >gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum JW20] Length = 902 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 114/503 (22%), Positives = 199/503 (39%), Gaps = 23/503 (4%) Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E T++ V G + N + LT Y S + I ++ Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIING 207 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + P S+R + + + ++ + E M + Sbjct: 208 VNREPEPN-PYERVLSERKTVGLRKNTMLVSKDG-TLRYVSASTAPIKSSDREIMGVVVV 265 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + R + K++ +L +E + I + + G I N +++ GY +++ Sbjct: 266 FRDITRIRKAEEKLQ----KLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFDEVK 321 Query: 494 RKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K F + LE+N + + S ++ +K + + S Sbjct: 322 GKSLFFMELEENGEEKCKDMIQAVFSGKEWRS---EIRHKSKNNVVFWEYAYYSPIINSE 378 Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+E K L AK+ AE + KS+FLA +SHEIRTPL IIG + Sbjct: 379 GVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTN 438 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + E N ++ L+L ++ND+LD SKIE+GKM L + Sbjct: 439 LTLQTEL----TDEQRENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFDFFNLL 494 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ--- 724 + + ANEK + + + IPRIL D ++Q+ N++SNA+ FT G Sbjct: 495 EKTYKAHIVQANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIGEVRID 554 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + I + ++ V DTG+G+ ++ K F Q+ +S + GTGLGL ++K + Sbjct: 555 VDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQL 614 Query: 785 VDANMGKFYIFSTPAKGTLIEII 807 V+ G+ ++ S KG+ Sbjct: 615 VEMMGGEIWVESQKGKGSTFYFT 637 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 78/237 (32%), Gaps = 14/237 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD---VSDILHIDPNNHI-GDLLKRQNTW- 143 D G + +++ + G + IG L + + + ++ +P + +L + T Sbjct: 169 TDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIINGVNREPEPNPYERVLSERKTVG 228 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 T L +GT Y + + PI S +RE G + ++L + Sbjct: 229 LRKNTMLVSKDGTLRY--VSASTAPIKSSDREIMGV--VVVFRDITRIRKAEEKLQKLSQ 284 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 I + + + + + ++V + ++ ++ + + ++ Sbjct: 285 AVEQSPGI--IVMADTRGNIEYVNPRFTEVTGYSFDEVKGKSLFFMELEENGEEKCKDMI 342 Query: 263 TSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S + + N + + Y+ + N+ YL + E Sbjct: 343 QAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSE 399 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 49/180 (27%), Gaps = 8/180 (4%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + + + ++++ +E + + +E + V++ Sbjct: 229 LRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGVVVVFRDITRIRKAEEKLQKLSQAVEQ 288 Query: 329 CP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P I + GN+ Y NP F +T Y + G S + + K ++ Sbjct: 289 SPGIIVMADTRGNIEYVNPRFTEVTGYS----FDEVKGKSLFFMELEENGEEKCKDMIQA 344 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + R + N + + + ++ + Sbjct: 345 VFSGKEWRSEIRHKS---KNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSENL 401 >gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1007 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 114/508 (22%), Positives = 211/508 (41%), Gaps = 24/508 (4%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E +D P + NL N + L + + S + ++ S Sbjct: 357 IQREKALAASERFLNTVIDTEPECVKLLDADCNLLMMNRAGLGIIEADSFEQVQGQCVCS 416 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + + + V L I I + + + + Sbjct: 417 LIAPPYQAAFRELTRQVFL------GIQGRLEFEAIGLKGRH-VWLETHAVPFHDDQGNI 469 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G+ + + ++ ++ E ++ E I++ + I+ NR ++FGY Sbjct: 470 TSLLGVTRNISERKQFEQAIKAERDHFQALFENDGSAHVIVSSDRRIVKVNRQFCEMFGY 529 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIK 546 ++L + + + + D ++ K+ + Sbjct: 530 DEAELLGES--TLILHVDQKHYDEWAPNFRQALDSKEHFSAEFPWRRKDTSIFWCVFNGV 587 Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 +L S T+ DI+ KQ + +L AK+ AE +S KS FLA +SHEIRTP+ I Sbjct: 588 RLELVSGDIVAVWTVIDITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGI 647 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG + +++ P Y I+ S N + +++D+LD+SKIESGK+ L + S Sbjct: 648 IGMTHLLQTTVITP----EQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFS 703 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722 L + E ++ Q K ++++T A+N+P I D +QI LN++ NAI FT G Sbjct: 704 LRRCIRELLASQQFQIQHKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQG 763 Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 I I+ + ++ + L + DTG+GM+ ++++ PF Q NS + G+GLGL Sbjct: 764 S-IAITARLVAQQDDLALIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGL 822 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + + +++ G+ + ST G+ I Sbjct: 823 AICQRLIELMGGRIWAESTEGNGSSFHI 850 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 25/253 (9%), Positives = 63/253 (24%), Gaps = 17/253 (6%) Query: 89 IDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +DA L ++ I + ++ G +C + + + + + G Sbjct: 384 LDADCNLLMMNRAGLGIIEADSFEQVQGQCVCSLIAPPYQAAFREL-----TRQVFLGIQ 438 Query: 148 TLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 E +V ++ A+P + + G + K F Sbjct: 439 GRLEFEAIGLKGRHVWLETHAVPFHDDQGNITSLLG--VTRNISERKQFEQAIKAERDHF 496 Query: 205 SHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E + ++Q + ++ + H D E P Sbjct: 497 QALFENDGSAHVIVSSDRRIVKVNRQFCEMFGYDEAELLGESTLILHVDQKHYDEWAPNF 556 Query: 263 TSEESS---LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 S + + + + + L+ S + + + ++ Sbjct: 557 RQALDSKEHFSAEFPWRRKDTSIFWCVFNGVRLELVSGDIVA-VWTVIDITARKQAEQQL 615 Query: 320 NLTPETVDKCPIP 332 E + Sbjct: 616 RSAKEAAEAANSA 628 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 7/135 (5%), Positives = 36/135 (26%), Gaps = 9/135 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLW 150 + +++ + + G +++G + + + + + L + + + W Sbjct: 515 RIVKVNRQFCEMFGYDEAELLGES-TLILHVDQKHYDEWAPNFRQALDSKEHFSAE-FPW 572 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + T++ + + + + V + + + Sbjct: 573 RRKDTSI-FWCVFNGVRLELVSGDIV---AVWTVIDITARKQAEQQLRSAKEAAEAANSA 628 Query: 211 KKGHSSVEKEKYDIF 225 K + + Sbjct: 629 KSAFLANMSHEIRTP 643 >gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 793 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 152/773 (19%), Positives = 277/773 (35%), Gaps = 73/773 (9%) Query: 89 IDAHGY-----LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKR 139 +D +G E++ K G +IG + +V + + I L Sbjct: 27 LDENGVPCDYEFLEVNAAFEKQTGLKCSDIIGKKATEVLPWIQDYSFDWIKFCGDIALNG 86 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 ++ KT P+ + +YS + + V + + + R Sbjct: 87 RD-EKNKTIFHPLS-----RWYKVH---VYSPEK-------YLFVTLYTDLSKDEEIFHR 130 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L+ +I + + + + + + + Sbjct: 131 LNDNSQ---DIIFRYELSPVRGFTYVNNAAASIIGYTPEEYYDDPDMCLKIIHPDDRKLL 187 Query: 260 PLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + L P + N +Q + + + ++ Sbjct: 188 GDCVQGKIPLHKPIVLRYIHKNGQTVWIEQRNLPTYDTNGNLIALEGIGRDITERKQAED 247 Query: 318 -------GENLTPETVDK----CPIPFFVYSHGNLFYANPSFL-----LLTKYKSVDD-- 359 E+ E + PI + NL P F + + D Sbjct: 248 NIYNGYVRESAINEILRLSFKDLPIERLLEKALNLILDIPDFELENAGAVFLVEDDADCL 307 Query: 360 -IEIAGGLSTLLDAPKLS---------DNNAIKPVMLYRSDRTCIAASAR--------LH 401 ++ + GL+ L + + ++ C Sbjct: 308 VLKASHGLADPLLRKCARVPFGKCLCGRAASTEKMIFADRVDECHDIHYEGMKPHGHYCT 367 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC----SI 457 +++ + + E + + I ++K E ++ S+ Sbjct: 368 PLRFKNQTIGVLNLYVQEGHTYSAKLEQFLVSSANALSGIIARKKAEEDINHYAGMITSL 427 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L++ D I + +G+ + N A ++ G P E+I+ K ++ + L Sbjct: 428 LDSIPDIIFFKDVKGVYMGCNPAFTEFVGRPREEIIGKTDYDLFDKAFADFFRKHDERTL 487 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAK 575 L + E+ + LL + + P + DI+E + + L K Sbjct: 488 ELLQPRHNEEWITYPDGRKILLDMLKTPYRGPDGLLIGILGIGRDITERNRAEQALLKGK 547 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 IAE+ KS+F+ +SHE+RTPL ++IGFS+V+ + G L N +Y + I +SG Sbjct: 548 LIAEENDRMKSEFITNMSHELRTPLNSVIGFSDVLLKEIKGEL-NDSQKKYISNISKSGR 606 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L+++ND+LD+SKIE GKM L E L+ +SE S+ A +K I ++ + IP Sbjct: 607 HLLELINDILDLSKIEEGKMELQCEDFDLNSILSEVESIFSPQAAKKDINLQFVLSEKIP 666 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 RI D +KQ+ N+L+NAI FTP G I + + + + V DTG+G+ +LE Sbjct: 667 RIKGDKIKIKQVIFNLLTNAIKFTPKNGAISVIAKENDDNIIEVSVSDTGIGIPEAKLED 726 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 PF Q+ S GTG+GL LAK V + GKF + S KG+ Sbjct: 727 VFDPFIQVDASTSRNYGGTGVGLSLAKKFVQMHDGKFCVESEVYKGSTFTFTI 779 >gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1619 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 127/775 (16%), Positives = 261/775 (33%), Gaps = 66/775 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYG-KTTL 149 G + + + G + +G RLCD+ +D + + R +T Sbjct: 362 DGVVTSWNRAAEQLFGYSQAQAVGQRLCDLIVSPELMDEEQSLLARIARGEHVPHFETLR 421 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------- 200 +G + + ++A PIY+ + G + RA L Sbjct: 422 RHADGRL--LDVLVSASPIYNAAGKPVGAS--MTLRDVSDQKAARAQILALNATLESQVA 477 Query: 201 -------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + E+ ++ + + R + V L Sbjct: 478 VRTAELSSSTAMLEGVLGAASEVSIIVTAHDGLVTLFNTGAERLLGYRREEVVGRLNAEA 537 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHT----------------INLNQYTKKQYFGT 291 H + + T L + F N + Sbjct: 538 FHLPEEVSTRGKALSLELGMPVQGFRVFVEKAERDGAETREWTYVCRNGDTRQVSLVVTA 597 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLT----PETVDKCPIPFFVYSH-GNLFYANP 346 ++ + YL S + + +D P + G + N Sbjct: 598 IRTDQGNVTGYLGMALDISERQAAERLLARSTALTQAILDTAVNPIITFDAHGKVRSFNR 657 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + Y + + + + G+ L + + + + ++ N Sbjct: 658 AGERVFGYNAGEIVGQSVGMLMPEAHASLHEAMLTDVWQVGPEWPEGVDNGREMQALRKN 717 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + G+ + + + + QL A GI Sbjct: 718 GDAFPVEICLGTMWMDGE---CLMVGMIADITERHRQRMALTAARDQLKMATAAAELGIW 774 Query: 467 IINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 L N + +++G+P + + + + + L + L Sbjct: 775 SWTLNDGALEWNERMFEIYGWPVELREQSPRYEDWQRMVHPDDLGFTEASLHKALEGSGV 834 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L ++ + ++ DI+E Q + +L AK +A++ Sbjct: 835 YDPVFRILREDGTQRHIQGGAHTERDAHGQVIRVIGINRDITEQLQAEQELRQAKALADE 894 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 S KS FLA +SHEIRTP+ A++G ++++ + R +Y ++G +L + Sbjct: 895 ASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRTAL----DARQADYVGKAQKAGTSLLSL 950 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699 +ND+LD SKIE+GK+ L P S++E + + ++ + I +IP ++ Sbjct: 951 LNDILDYSKIEAGKLQLDLHPFSMEELLRDLSVVLSGNHQRPEVEIVYRLGRDIPDCLIG 1010 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRV--RDTGVGMTNYELEKA 756 D ++Q+ +N+ NA+ FT G ++ + H + V LRV D+G+G++ + ++ Sbjct: 1011 DSLRLQQVLINLAGNALKFTEHGHVLLNVDLLHRQPQAVTLRVTVEDSGIGISAEQQQRI 1070 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 F Q S R G+GLGL +++ +V G+ + S +G+ PL Sbjct: 1071 FHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQLQLHSVLGEGSRFWFDLPLA 1125 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 59/453 (13%), Positives = 124/453 (27%), Gaps = 39/453 (8%) Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G I G +L L REF G GFG + RV A Sbjct: 67 RGLRGAVLIAGADLRSDQLRHYLQSRDLPREFPGAGGFGFIR--RVVQADEARFLAAQ-Y 123 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + +++ I S + + + P L+ Sbjct: 124 ATGRQDSRIPLAPHAGDRFVIEYIDSSGNSAVQLGQDIASDPSWRAVAWAAALSGEPRLS 183 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + L + T + E + P L + NL Sbjct: 184 GPVTLAQASAQGAQAFLMLLPVYRSGLTPSTVALRQRELVGWTYVPLLMPKVMQALNLDA 243 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + ++ L AN + + +AP A Sbjct: 244 KRIELA-----------LSDANAAGTAI---------------PFYRNAPHAPLAQAPHA 277 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + ++ ++ R Sbjct: 278 FLGRTVMGRHWYMHMAAGGDFVAANALWSVGPAMITGMLLSALAAALAFALGNNLLRR-- 335 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-E 502 +++ L ++L++++D I +G++ S NRA +LFGY + + + Sbjct: 336 -QQIARNHANLIAVLQSSTDAIIGKTLDGVVTSWNRAAEQLFGYSQAQAVGQRLCDLIVS 394 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558 L I + TL + +LL + + + ++ S+T+ Sbjct: 395 PELMDEEQSLLARIARGE--HVPHFETLRRHADGRLLDVLVSASPIYNAAGKPVGASMTL 452 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 D+S+ K + ++ E + + ++ L+ Sbjct: 453 RDVSDQKAARAQILALNATLESQVAVRTAELSS 485 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 28/259 (10%), Positives = 68/259 (26%), Gaps = 23/259 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY---- 144 DAHG ++ + + G A +++G + + H + + D+ + W Sbjct: 647 DAHGKVRSFNRAGERVFGYNAGEIVGQSVGMLMPEAHASLHEAMLTDVWQVGPEWPEGVD 706 Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + G P+++ ++ G++ + R Sbjct: 707 NGREMQALRKNGDAF--PVEICLGTMWMDGECLM----VGMIADITERHRQRMALTAARD 760 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLK 255 + + P LR ++ + H DD L Sbjct: 761 QLKMATAAAELGIWSWTLNDGALEWNERMFEIYGWPVELREQSPRYEDWQRMVHPDD-LG 819 Query: 256 TEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + L + E S F + + Q + T ++ + + + Sbjct: 820 FTEASLHKALEGSGVYDPVFRILREDGTQRHIQGGAHTERDAHGQVIRVIGINRDITEQL 879 Query: 314 YFDEGENLTPETVDKCPIP 332 ++ D+ Sbjct: 880 QAEQELRQAKALADEASQA 898 >gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501] gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501] Length = 1068 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 143/771 (18%), Positives = 265/771 (34%), Gaps = 71/771 (9%) Query: 98 ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIE 153 S + +G ++ + + I K+ + + + L + Sbjct: 68 FSPRWKEMLGYSEQELPNHIDTWKQLLHPQDRERVMKILGDHFAKKTDHYSAEFRLKCQD 127 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---EI 210 G Y I ++ R G + + L L L + Sbjct: 128 GN--YKWILSRGQALWDEAGNPV--RMAGSHTDISDRKNEQILLTSLIDCIPDLVFYKDS 183 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 K + + R + E A ++ E + Sbjct: 184 KGVYKMCNNAFETFAGRDRKYIIGRNDFDLFLTEEALAFREQDRFMMLQKQSRRNEEWIT 243 Query: 271 -EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + ++ + G L S + + E + L + Sbjct: 244 YPNGNRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKKQAERDALLSNIARQL 303 Query: 330 -------PIPFFVYSHGNLFYANPSF---------------------------------L 349 + F + S G + S+ L Sbjct: 304 IDQDLNTAVNFVLESIGKFTQCDRSYIIRYFPQEKVWSMVHEWCDEYSPSTIHDSQNISL 363 Query: 350 LLTKYKSVDDIEIAGG-LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + S IE ++ L D P + + + R T+ + Sbjct: 364 EVFPWFSQQLIEGKSICINKLDDFPSEATPEREAYKTSLSPNLLVVPMMTRCQTVGYLG- 422 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + I + + IL+ ++ I I Sbjct: 423 --IDTNVYKHWTKDDINLLKLVGELMAIAEARAIAEEAQSESQARFAGILDNANEAIISI 480 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTL 525 + I N A + FGY ++L +PF + + + Y+ + Sbjct: 481 DENQKITLFNHAAEQTFGYTSNEVLGQPFNLLIPSRFTNNHYQYINSFKNTQETARQMGG 540 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + G K+ + I K+ ++ + DI+E KQ + L AK+ A+ + Sbjct: 541 RRPVFGQRKDGTEFLAEVSISKIKPRGKTIFTAIIRDITERKQAEEALKKAKEKADAANC 600 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHE+RTPL AI+GF++V++ + NP + + I RSG +L+++ND Sbjct: 601 AKSEFLASMSHELRTPLNAILGFTQVMQRDQ---ELNPDHKQNLEIIGRSGEHLLELIND 657 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +L+++KIE+G+ + L + S++ L A EK + + N+P+ I D Sbjct: 658 ILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKIENLPQYIETDES 717 Query: 703 SVKQIALNILSNAIHFTPSGGQI-IISTT--HTSNEEVI--LRVRDTGVGMTNYELEKAM 757 ++Q+ +N+L NAI FT GG I I T N+E+I V DTG G+ E+++ Sbjct: 718 KLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDTGPGIAPEEVDQLF 777 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + FGQ + EGTGLGLP+++ V G+ + S +G+L Sbjct: 778 EAFGQTETGRNSN-EGTGLGLPISQKFVQLMGGEISVSSVLGRGSLFTFTI 827 Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 32/307 (10%), Positives = 83/307 (27%), Gaps = 31/307 (10%) Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E + + ++ + +P + + Y + LL Sbjct: 38 LRESEERWQLVLKGTNEGIWDWNLKTDEMFFSPRWKEMLGYSEQELPNHIDTWKQLLHPQ 97 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 I + A ++ N + ++ + G Sbjct: 98 DRERVMKILGDHFAKKTDHYSA----EFRLKCQDGNYKWILSRGQALWDEAGNPVRMAGS 153 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + + L S+++ D + + +G+ N A G + I+ Sbjct: 154 HTDISDRKNEQI-------LLTSLIDCIPDLVFYKDSKGVYKMCNNAFETFAGRDRKYII 206 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + ++ + E+ +L+ P Sbjct: 207 GRNDFDLFLTEEALAFREQDRFMMLQKQSRRNEEWITYPNGNRRLVDTLKTPFCCPEGKL 266 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH-----EIRTPLT----A 602 DI++ KQ++ A K+ + + L+ ++ ++ T + + Sbjct: 267 MGTIGISRDITDRKQKEE--------AIKKQAERDALLSNIARQLIDQDLNTAVNFVLES 318 Query: 603 IIGFSEV 609 I F++ Sbjct: 319 IGKFTQC 325 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 44/134 (32%), Gaps = 7/134 (5%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFL 501 + + + +L+ T++GI N + + + ++ GY +++ + L Sbjct: 35 QENLRESEERWQLVLKGTNEGIWDWNLKTDEMFFSPRWKEMLGYSEQELPNHIDTWKQLL 94 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + L + + ++ + + L + + + Sbjct: 95 HPQDRERVMKILGDHFAKKTDH-YSAEFRLKCQDGNYKWILSRGQALWDEAGNPVRMAGS 153 Query: 558 MHDISEWKQEKNKL 571 DIS+ K E+ L Sbjct: 154 HTDISDRKNEQILL 167 Score = 37.7 bits (86), Expect = 8.1, Method: Composition-based stats. Identities = 27/309 (8%), Positives = 80/309 (25%), Gaps = 28/309 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----------NHIGDLLK 138 ID + + + +T G + +++G + + + + Sbjct: 480 IDENQKITLFNHAAEQTFGYTSNEVLGQPFNLLIPSRFTNNHYQYINSFKNTQETARQMG 539 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + +G+ +GT + ++ + + I+ K Sbjct: 540 GRRPVFGQ----RKDGTEFLAEVSISKIKPRGKT------IFTAIIRDITERKQAEEALK 589 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + +K + K + + + ++ + L + +++ Sbjct: 590 KAKEKADAANCAKSEFLASMSHELRT-PLNAILGFTQVMQRDQELNPDHKQNLEIIGRSG 648 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 LL + + + I + T + L L + E Sbjct: 649 EHLL----ELINDILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEK 704 Query: 319 ENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 P+ ++ + GN ++ + K+ + I + + Sbjct: 705 IENLPQYIETDESKLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDT 764 Query: 376 SDNNAIKPV 384 A + V Sbjct: 765 GPGIAPEEV 773 >gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 753 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 115/586 (19%), Positives = 224/586 (38%), Gaps = 46/586 (7%) Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---- 301 + E L +LP F T + + Sbjct: 51 EEEPPIILADIELPGLTQIIGRALPPVILFREKQQFPATPPPDAFAIIESDFSPEAFSSI 110 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK----- 355 + H +L F E ++ + + GN+ Y + + + Sbjct: 111 LQAASRHTTLLQSFIRERMNGREIINNLNDVVYTIDLKGNVVYISSAAERYGFFPRNIIG 170 Query: 356 -SVDDIEIAGGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 SV D+ L +S+ A + + ++ + + Sbjct: 171 KSVFDLIDREDHDYLRQQMNKLISERQATSLLRVTNAEGKTRQVRTSSRIVTQHGMPF-- 228 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 G+ + D ++++ +L +E +++ I I + EG Sbjct: 229 ----------------SITGLLTDQTDQSFREQQIL----KLTQAVEQSANVIVITDLEG 268 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + NRA + GY ++ + + + + L E +S E Sbjct: 269 NMEFVNRAFERSTGYGRQEAIGQNPRILKTDYLSEEVYKNLWETISSGN--VWEGKFHNK 326 Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 K+ + +I + + + DI++ + +L AK++AE+ S KS+F Sbjct: 327 RKDGSTYWEKALISPIKNDAGTIINFVAVKEDITKELAYQQELEQAKEVAEEASRLKSEF 386 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTPL I+GF++++ ++ + + ++ + I SG +L+++ND+LD S Sbjct: 387 LANMSHEIRTPLNVILGFTDLLLDE----TEDAKKRDHLHLIKDSGKNLLELINDILDFS 442 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 KIE+ K++L + + + L A K + +P +L D ++QI Sbjct: 443 KIEANKLDLEIDVFDPKALLQNIKGMFSLEAKRKGLDFTVEHDVPLPELLGDQYRIRQIL 502 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +N+LSNA+ FT G + + + + + V DTG+G+ ++ PF Q+ S + Sbjct: 503 MNLLSNAMKFTEVGS-VSLRAHYENTGIMRFSVSDTGIGIPEESRKQIFHPFEQLDGSAK 561 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + GTGLGL + + +V G + S +G+ I PL T+ Sbjct: 562 RKFSGTGLGLSITRRLVHLMGGNITLESKAGRGSTFTIELPLPTTT 607 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 42/138 (30%), Gaps = 5/138 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G ++ ++ ++ G + IG + + ++ + + N W GK Sbjct: 264 TDLEGNMEFVNRAFERSTGYGRQEAIGQNPRILKTDYLSEEVYKNLWETISSGNVWEGKF 323 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ + ++ PI + F + + + ++ + Sbjct: 324 HNKRKDGSTYWEKALIS--PIKNDAGTIINF--VAVKEDITKELAYQQELEQAKEVAEEA 379 Query: 208 HEIKKGHSSVEKEKYDIF 225 +K + + Sbjct: 380 SRLKSEFLANMSHEIRTP 397 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 70/244 (28%), Gaps = 10/244 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + ID G + IS + G + +IG + D+ D D + L + Sbjct: 142 VYTIDLKGNVVYISSAAERY-GFFPRNIIGKSVFDLIDREDHDYLRQQMNKLISERQATS 200 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + EG V + + +G + + +L + Sbjct: 201 LLRVTNAEGKTRQVRTSSRIVTQHGMPFSITGL-----LTDQTDQSFREQQILKLTQAVE 255 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++ + + + R + D + + L + Sbjct: 256 QSANVIVITDLEGNMEFVNRAFERSTGYGR--QEAIGQNPRILKTDYLSEEVYKNLWETI 313 Query: 266 ESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S + FH + + Y +K ++N++ +++ + + + + Sbjct: 314 SSGNVWEGKFHNKRKDGSTYWEKALISPIKNDAGTIINFVAVKEDITKELAYQQELEQAK 373 Query: 324 ETVD 327 E + Sbjct: 374 EVAE 377 >gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3] gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3] Length = 759 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 144/688 (20%), Positives = 253/688 (36%), Gaps = 59/688 (8%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A + + +G P+A G+RL+ + V K Sbjct: 72 AGFSVIGADGAILASQGPVQSPGVLALTGPQAGGRRLEARILPSLPASGAVRIVSKTGVV 131 Query: 224 IFSQQSPPPHLRMKNKV-------SSLTEYYAHKDDVLKTEKYPLLTSEE--SSLPEQED 274 + S + + +SLT A P+ +L Sbjct: 132 LASPNAAEVGRSATPLIGVQAGDLASLTTPVATPGGRASVVAAPITPDGPYVVALQSGPP 191 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 L L + S + E V+ + Sbjct: 192 AGAAGLLGEAWVLAAPVLLGLGVLALFLFQGLRRARASREWASSEKRFRIAVEAARCGVW 251 Query: 335 VYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + + L +++ + ++ + + +A++ Y + Sbjct: 252 EWDLDGAEVTLSDYMATLLGFETGGVVPAEAVMARIHPRYRDEVQHALRQATAYGAFEVT 311 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +W A A G+ + + R K + + Sbjct: 312 FPVPGDGGRTRWIDARGQA------RGARGEAGFSAILGVALDITEARRAKAAAQSAESR 365 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +E+ SD + +R+G ++ N+A F + + + E N + + Sbjct: 366 LRDGVESISDAFVLFDRQGRLILWNQAFEDAFDFQSGVV--RRGAAKEELNRIAALAIKA 423 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + E + + L L ++ +T DI+ K+E+ + Sbjct: 424 EHAPTDGRAGLREVEL----HDGRWLQLS---ERFTSEGGSVVTAADITAIKREETERRR 476 Query: 574 A----------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 A AE + KS+FLA +SHE+RTPL AI G Sbjct: 477 AVEDLSRTVAQLEASQQMLSQLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAING 536 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE++ + FGP+G +Y YA I +SG +L ++ND+LD++KIE+GKM LH+EPVSL Sbjct: 537 FSEIMAAELFGPIG-EKYKGYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSLR 595 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +A L++ E + + A ++P I AD R VKQ+ LN++SNA+ FTP GG + Sbjct: 596 DVCEDAARLMRGKVLESGLTLEIE-AGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGTV 654 Query: 726 IIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +S + V + DTG+G+ + + +PF Q+ +GTGLGL L Sbjct: 655 TLSLTPFKGAAGEDRVRVACADTGIGIAPEHMVRLARPFEQVEGQHSKTTQGTGLGLALT 714 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K++++ + G+ I S P GT++ P Sbjct: 715 KSLIEMHGGRLNIESEPGVGTVVSFDLP 742 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 19/247 (7%), Positives = 58/247 (23%), Gaps = 4/247 (1%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D G +S+ + +G ++ V +H + + L++ + Sbjct: 250 VWEWDLDGAEVTLSDYMATLLGFETGGVV--PAEAVMARIHPRYRDEVQHALRQATAYGA 307 Query: 146 KTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +P+ G ID E G+ +A + + + Sbjct: 308 FEVTFPVPGDGGRTRWIDARGQA-RGARGEAGFSAILGVALDITEARRAKAAAQSAESRL 366 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E + + + + + + + Sbjct: 367 RDGVESISDAFVLFDRQGRLILWNQAFEDAFDFQSGVVRRGAAKEELNRIAALAIKAEHA 426 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + F + + + + + + + E + T Sbjct: 427 PTDGRAGLREVELHDGRWLQLSERFTSEGGSVVTAADITAIKREETERRRAVEDLSRTVA 486 Query: 325 TVDKCPI 331 ++ Sbjct: 487 QLEASQQ 493 >gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 982 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 117/649 (18%), Positives = 229/649 (35%), Gaps = 52/649 (8%) Query: 176 SGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 SG RG + R N P R + F + ++ + + P + Sbjct: 79 SGIRGHITSLRPIRQANAPDNWETRALESFERGQQEYSSVELMDGVPHLRLMR---PLMV 135 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 Y+ D L + + + G + Sbjct: 136 EQSCLRCHPGPSYSVGDVRGGISVSVPLAPYSALARNKMAATGAGHLTFWAAGLGGIILA 195 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 + + + S + A +E L E ++ G + N F L Y Sbjct: 196 ARRITRDDRSLLLQQARLAESEERNRLLSEVAL---EGIVIHDRGIVQDMNARFAKLFGY 252 Query: 355 KSVDDIEIAGGLSTLLDAPKL--------SDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 +++E +S L + ++ V + D T + +Q Sbjct: 253 PR-EELEGINVISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVFDVEIEGYNLQHG 311 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ ++ + + R + + ++ E + Sbjct: 312 DKSVRVVSVR-------------------DITERRRAEEALRQSEALFRNLFEHHAAVKL 352 Query: 467 IINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 II+ G I+ N A +G+ E + ++E+ + + + Sbjct: 353 IIDPVSGAIVDANNAAVSFYGWSREQLRAMNIRDI----NMLSPEELVSELENTKNMERI 408 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++ + + + ++ +HD++E K+ + +L AK+ AE + Sbjct: 409 HFFFRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANR 468 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ +IG + ++ YA + S +L +++D Sbjct: 469 AKSEFLANMSHEIRTPMNGVIGMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDD 524 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SKIE+G++ + L + + + ANEK + +PR ++ D Sbjct: 525 ILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPV 584 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 +KQ+ +N+ NA+ FT G +I + T + ++ VRDTG+G+ + E + Sbjct: 585 RLKQVLVNLAGNALKFTHQG-EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFE 643 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q S + GTGLGL + K +V G+ + S P G+ Sbjct: 644 KFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWFT 692 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 25/293 (8%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 ++ K G ++ G+ + +S + H D + D + R ++ + +GT Sbjct: 242 MNARFAKLFGYPREELEGINV--ISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVF 299 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 V I+ L ++ V ++ + F +L E + Sbjct: 300 DVEIEGYNLQHGDKSVRVV------SVRDITERRRAEEALRQSEALFRNLFEHHAAVKLI 353 Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED--- 274 + S + D+ L++ E++ + Sbjct: 354 IDP--VSGAIVDANNAAVSFYGWSREQLRAMNIRDINMLSPEELVSELENTKNMERIHFF 411 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 F + + + + K S + + +E L E + Sbjct: 412 FRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESAN---- 467 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 A FL ++ + G++ LL L+D ++ Sbjct: 468 --------RAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVR 512 >gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS] Length = 866 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 9/386 (2%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + ++ + + +ILE GI +I+ GII N A ++FGY Sbjct: 176 ANIIEAYRINKQNQQSENALRDSESKNRAILETMIGGIVVIDSNGIIELFNPAAEEMFGY 235 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII 545 +++ + + S + YL L+ R+ + + + K+ + + + Sbjct: 236 LAPEVIGYNVNRLMPEPYHSEHDQYLNNYLTTSQRKIIGIGREVVAKRKDGSFFPIELAV 295 Query: 546 KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++ + + + DI+E K + L AK+ AE+ + KS+FL +SHE+RTPLT + Sbjct: 296 SEMYEGNALKFVGRIIDITERKAAEFALIKAKEQAEESNRLKSEFLNVISHELRTPLTIM 355 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G + + A I+ SG +L ++NDLLD+SKIE+GKM + E +S Sbjct: 356 LGNL-PLLTDPNDLPDAEEIADIATDIEDSGQHLLTLINDLLDLSKIEAGKMTIQQELLS 414 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + + I+ +Q+ A+EK + I T + + AD +KQI LN+L NAI FT +G Sbjct: 415 VAALTQDVITSIQVMAHEKNLTIETEIDD--IEVFADPIRLKQILLNLLGNAIKFTENGF 472 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I + ++ +V V D G G+ ++ F Q +S R +GTGLGL + K Sbjct: 473 -IKVKIKPMAH-QVCFFVEDCGCGIDEKDVPFIFDAFRQSDSSAARRADGTGLGLAITKK 530 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ + GK + S KG++ P Sbjct: 531 LVELHNGKISVQSLLGKGSVFSFSIP 556 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 66/214 (30%), Gaps = 17/214 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144 ID++G ++ + + G A ++IG + + H + + ++ + L Sbjct: 216 IDSNGIIELFNPAAEEMFGYLAPEVIGYNVNRLMPEPYHSEHDQYLNNYLTTSQRKIIGI 275 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ + PI+LA +Y F G I + ++ Sbjct: 276 GREVVAKRKDGS--FFPIELAVSEMY--EGNALKFVGRII--DITERKAAEFALIKAKEQ 329 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + +K +V + P + + N + + + Sbjct: 330 AEESNRLKSEFLNVISHELRT------PLTIMLGNLPLLTDPNDLPDAEEIADIATDIED 383 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 S + L D ++ + K L + + Sbjct: 384 SGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAA 417 >gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1135 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 110/511 (21%), Positives = 204/511 (39%), Gaps = 22/511 (4%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366 E E+ V+ P F G + +AN + + + Sbjct: 154 RQYAEQKLVESESFYRSLVETLPYAMFRKDLHGRVTFANRKLCEILGSPPNEVVGK---T 210 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L+D T + + E + + Sbjct: 211 DYDFFPTDLADKYRADD---RYVTETRAQFETIEEFVTPSGE-VHYTHVMKNPVYDGRGN 266 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + GI + D + + ++ E L +++++ D I + G L N+A + G Sbjct: 267 CVGIQGIFSDVTDRKRTEIALDQERDLLNNLMKSIPDNIYFKDVRGRYLRINQAKAAASG 326 Query: 487 YPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII- 544 + + K T F ++ ++ L + K + + + Sbjct: 327 LSDPSLAIGKSDTDFFSAEHAAIARKDEEYVMQTRLP-LIGKEERVVWSDGHIRWMSTTK 385 Query: 545 ---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I DI+ K + L AK AE + KSDFLA +SHEIRTPL Sbjct: 386 LPLISPAGDVIGTYGVSRDITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLN 445 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIG +E++ + +Y + SG +L I+ND+LD SKIE+G++++ +P Sbjct: 446 AIIGMTELVMDTDLKVA----QRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQP 501 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 L +++ + + + A+ K++ + + ++P + D V+Q+ +N+L NA+ FT Sbjct: 502 FRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTE 561 Query: 721 SGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G ++ +S + E+V +V+DTG+G+ + E + F Q +S R GTGLG Sbjct: 562 RGEVVLDVSVESRTAEQVTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLG 621 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L ++ +V+ GK ++ S +G+ Sbjct: 622 LAISARLVELMQGKIWVESEVGQGSTFHFTL 652 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 49/155 (31%), Gaps = 4/155 (2%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E + + ++K+ S++E + + G + NR + ++ G P +++ Sbjct: 148 ISEVLKRQYAEQKLVESESFYRSLVETLPYAMFRKDLHGRVTFANRKLCEILGSPPNEVV 207 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K F + + + + + + E + + Sbjct: 208 GKTDYDFFPTDLADKYRADDRYVTETRAQFETIEEFVTPSGEVHYTHVMKNPVYDGRGNC 267 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 D+++ K+ + L + + + KS Sbjct: 268 VGIQGIFSDVTDRKRTEIALDQERDLLN--NLMKS 300 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 25/278 (8%), Positives = 74/278 (26%), Gaps = 8/278 (2%) Query: 60 ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119 + ++SE+ + + D HG + + +L + +G+ +++G Sbjct: 154 RQYAEQKLVESESFYRSLVETLPYA-MFRKDLHGRVTFANRKLCEILGSPPNEVVGKTDY 212 Query: 120 DVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 D D + + + + G Y + P+Y G Sbjct: 213 DFFPTDLADKYRADDRYVTETRAQFETIEEFVTPSGEVHYTHVMKN--PVYDGRGNCVGI 270 Query: 179 RG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 +G F V + + L V I ++ L Sbjct: 271 QGIFSDVTDRKRTEIALDQERDLLNNLMKSIPDNIYFKDVRGRYLRINQAKAAASGLSDP 330 Query: 238 NKVSSLTEYY---AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + ++ A + + ++ ++ + + ++E + + L + Sbjct: 331 SLAIGKSDTDFFSAEHAAIARKDEEYVMQTRLPLIGKEERVVWSDGHIRWMSTTKLPLIS 390 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + + ++ + + Sbjct: 391 PAGDVIGTYGVSRDITPMKLAEQALREAKDAAEAANRA 428 >gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1436 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 126/711 (17%), Positives = 248/711 (34%), Gaps = 29/711 (4%) Query: 115 GMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G ++ D + + +Q + + W + DL ++ Sbjct: 227 GDYAQEIPFTKAADETGDLARAIDVLKQGSAAMEEQRWVKAN-AAKITADLQGADSFADF 285 Query: 173 RE--FSGFR---GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + SG G G+ V + P L + + E + Sbjct: 286 GQRLVSGLVPLLGGGVAAVYSFEEHPACLRRIAAYGLTEAGSGVDSFKPGEGLVGQCAQE 345 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P + + + + + E FH+ + + + + Sbjct: 346 RKPITLTDLPPGYLRIVSGLGTSVATQSSAFPLISAEALLGVIEFASFHSFSTQEQSLLK 405 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346 + + E + H E +D + + + G + + N Sbjct: 406 ELLPVATMNLEILQRNLHTQELLEQVKTTEERTRL--ILDSADEGIYGMATDGQITFVNT 463 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQW 405 + + + + I P S + P+ + Sbjct: 464 ATCRMLGFAPEEMIGQKAHPLIHHHRPDGSPYPIEECPMRAACQAGEVRRVD-DEFLWRK 522 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + + + + + + ++ + ++LE+ + Sbjct: 523 DGTGFPVEYATTPIVKD--GKILGAVVSFTDITERKRAQEELAYRLTFQRALLESIPYPM 580 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQ 523 + + +S N+A ++F + + K L + + T ++ R+ Sbjct: 581 FVKDAHARFISCNKAYERVFNTMADFLKGKTVLDLEYLPEVDRRKFHDEDTAVIREASRR 640 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + E + + KL + DIS+ K+ +L AK AE+ Sbjct: 641 SYELPIQYADGRTHTTLYSVDGFKLCDGSPGGLIGLLVDISDQKRVAEELRLAKAKAEEA 700 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS FLA +SHEIRTP+ AIIG S + + P + +Y + +G +L ++ Sbjct: 701 TQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTP----KQRDYIGKVHNAGTSLLAVI 756 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD SKIE+GK++L LDE ++ +L A+EK + IP +L D Sbjct: 757 NDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHEKGLEFLAHVTPGIPEFLLGD 816 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756 + QI N ++NA+ FT G +I ++ ++ VRDTG+GMT + K Sbjct: 817 PLRLGQILTNFVNNAVKFTERG-EIRLNIELIERTGEKLQLKFSVRDTGIGMTTEQAAKL 875 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +PF Q S + GTGLGL + + +V+ G+ ++ S P G+ Sbjct: 876 FQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIWLESEPGAGSTFYFT 926 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 59/253 (23%), Gaps = 28/253 (11%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNTWY- 144 G + ++ + +G +MIG + + D + + + Sbjct: 455 DGQITFVNTATCRMLGFAPEEMIGQKAHPLIHHHRPDGSPYPIEECPMRAACQAGEVRRV 514 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 LW +GT P++ A PI ++ + G + Sbjct: 515 DDEFLWRKDGTGF--PVEYATTPIV-KDGKILGA--VVSFTDITERKRAQEELAYRLTFQ 569 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-------------NKVSSLTEYYAHKD 251 L E V+ S + + + H + Sbjct: 570 RALLESIPYPMFVKDAHARFISCNKAYERVFNTMADFLKGKTVLDLEYLPEVDRRKFHDE 629 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 D + + E HT + K G+ + + + Sbjct: 630 DTAVIREASRRSYELPIQYADGRTHTTLYSVDGFKLCDGSPGGLIGL---LVDISDQKRV 686 Query: 312 SAYFDEGENLTPE 324 + + E Sbjct: 687 AEELRLAKAKAEE 699 >gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT] Length = 1692 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 144/800 (18%), Positives = 283/800 (35%), Gaps = 93/800 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----------IDPNNHIGDL- 136 +DA G + + + + G +M+G + H + + HI L Sbjct: 537 VDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPFHGCRRPMLIDLVMRYDEHIASLY 596 Query: 137 --LKRQNTWYGKTTLWPI--EGTNLYVPIDLAALPIYSRN----REFSGFRGFGIVHVNR 188 L+R+ P G Y+ + + P+ + R + Sbjct: 597 ENLERRGDTLYAYVYVPSLYSGRGAYLWVKAS--PLKDSDGRIVGAIESMRDITESRIAE 654 Query: 189 VDNDPRA-----------LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 ++ R + S ++E + + + L ++ Sbjct: 655 MELLRRDHLLAGSALAISSLLSGEDYESSINEAMQILGLISDVDRVYVFENHEEDELCLR 714 Query: 238 NKV----------------SSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTIN 279 + S + ++ +VL + K L+ S+ E + + + Sbjct: 715 FEWCRDGIRSWMDDQIFMGLSYSRFFPGWYEVLSSGKVIKGLVRDLPPSVKEILEPYGVL 774 Query: 280 LNQYTKKQYFGTLQN----------------NSKESFEYLSHRNHPSLSAYFDEGENLTP 323 G S E L Sbjct: 775 SILIVPITVGGRFWGFVGFDDTTYEREWSDAEISILVASASTIGEAVAKKDSIERMRLLE 834 Query: 324 ETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 V + + + Y N +F +T Y + + + + Sbjct: 835 SAVVNSNDAIVIAAPDPSDGMPKIIYVNSAFTRMTGYAREEVLGRYPDF------LEGPE 888 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + K + + + R + L + + + F + E I+ + Sbjct: 889 TDRSKIMEILEAVRNAQPVNQELVNYRKDGSR-FWVELNIFPVRDHMGEVTHWVSIQRDT 947 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP--VEDILR 494 + R+ + ++ + + S+ E+ G ++NR G L N +L G ED+ Sbjct: 948 TERRVAEDRLRWSELLMRSMTESIPFGFYVLNRATGKSLYLNHRFCELLGVEDLEEDLRC 1007 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552 + M+ + L +T E T + +++ + + Sbjct: 1008 GRLDGSALFSRIGSMHPDAGDSLREIYNRTDEAEIEIRTADGRVIKVFATDIRDKSGKYF 1067 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D+++ + +L AK+ AE+ + K++FLA +SHEIRTPL AIIG S ++ Sbjct: 1068 GRLGIFEDVTKDIKAAEELRKAKEAAEEAARSKAEFLANMSHEIRTPLNAIIGMSGLLLR 1127 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P Y + I SGN +L+++ D+LD+S+IE GK+ L S+ E V I Sbjct: 1128 TNVTP----EQRSYVSAIQSSGNALLEMLADILDLSRIEEGKLELDSSTFSILECVETCI 1183 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT 730 ++ + A+EK+I + ++P +L D ++Q+ +N+L NAI FT G + + Sbjct: 1184 DILSVKASEKQIELAYLIDEDVPELVLGDATRLRQVLVNLLENAIKFTERGEVFLRVICQ 1243 Query: 731 HTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + E+ VRDTG+G+ ++++ F Q+ +S R GTGLGL ++K +V+ Sbjct: 1244 YMDEDLSELHFFVRDTGIGIPPEKMDRLFHTFSQVDSSITRRYGGTGLGLAISKHLVEMM 1303 Query: 789 MGKFYIFSTPAKGTLIEIIF 808 G+ + S P G+ Sbjct: 1304 GGRIWAESIPGAGSTFHFTI 1323 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 50/562 (8%), Positives = 145/562 (25%), Gaps = 76/562 (13%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------------QN 141 + + + + +G ++ + L D+ + + + I + R + Sbjct: 128 RILDANAVFQELLGYPPEEIHSLTLYDIMEQDREEIDEIIRHAMSRETESIQAYRTIDGS 187 Query: 142 TWYGKTTLWPIEGTN----------------LYVPIDLAALPIYSRN------------- 172 + K P EG + LA + + + Sbjct: 188 SIQMKGRFSPTEGDGTLCVILSPPENHEDYIQKRDVLLAGVAMSANQLLTVDGFERSLMN 247 Query: 173 -----REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + + ++ + + + + + + + + Sbjct: 248 ALEFLGSAADVDRVYVYQNTDSGDEAVLRFRWERGSVHARLDERIRYDVLPRWRERFLND 307 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P + ++ +P+ ++ F + + Sbjct: 308 R---PVHGIVEEMPLQERELLKCRGARSVLIFPITIADRFWG-----FIGFEDCERERSW 359 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346 + + E E V+ + GN+ + N Sbjct: 360 SWNEISILMLGVASIGGAIARSVAEECLRRSEERYRELVESANSIILRLDRRGNVRFINE 419 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 Y + + + P++ M+ + ++ Sbjct: 420 FAQQFFGYSESEILGKCVMGT---LVPEVESTGRDLRGMIAEILKAPEDYRTNVNENMKK 476 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + +++ E M + + + R K ++E L I+E D Sbjct: 477 SGERVWIAWTNKTVSSESGE-MEILCVGNDITELRRAKERLESMNQWLLEIIEFLPDATL 535 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 +++ +G +++ NRA+ ++ G ++L K + + ++ + Sbjct: 536 VVDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPFHGCRRPMLIDLVMRYDEHIASL 595 Query: 524 TLEKITLGST------------KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569 G T L ++ K +M DI+E + + Sbjct: 596 YENLERRGDTLYAYVYVPSLYSGRGAYLWVKASPLKDSDGRIVGAIESMRDITESRIAEM 655 Query: 570 KLSHAKKIAEKESSHKSDFLAR 591 +L + + S L+ Sbjct: 656 ELLRRDHLLAGSALAISSLLSG 677 Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats. Identities = 63/572 (11%), Positives = 152/572 (26%), Gaps = 83/572 (14%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKR-QNT 142 +D G ++ I+E + G +++G + D I ++LK ++ Sbjct: 407 RLDRRGNVRFINEFAQQFFGYSESEILGKCVMGTLVPEVESTGRDLRGMIAEILKAPEDY 466 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G V I + S + E + + + + +++ Sbjct: 467 RTNVNENMKKSGE--RVWIAWTNKTVSSESGE---MEILCVGNDITELRRAKERLESMNQ 521 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------------------------------- 230 + E + V + + Sbjct: 522 WLLEIIEFLPDATLVVDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPFHGCRRPML 581 Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKT-----------------EKYPLLTSEESSLPEQ 272 +R ++SL E + D L + PL S+ + Sbjct: 582 IDLVMRYDEHIASLYENLERRGDTLYAYVYVPSLYSGRGAYLWVKASPLKDSDGRIVGAI 641 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 E I ++ + + + + S + + +E + D + Sbjct: 642 ESMRDITESRIAEMELLRRDHLLAGSALAISSLLSGEDYESSINEAMQILGLISDVDRVY 701 Query: 333 FFVYSHGNLFYANPSFLL--LTKYKSVDDIEI-------AGGLSTLLDAPKLSDNNAIKP 383 F + + + + G L + P Sbjct: 702 VFENHEEDELCLRFEWCRDGIRSWMDDQIFMGLSYSRFFPGWYEVLSSGKVIKGLVRDLP 761 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + S + I + F ++ + + Sbjct: 762 PSVKEILEPYGVLSILIVPITVGGRFWGFVGFDDTTYEREWSDAEISILVASASTIGEAV 821 Query: 444 KRKMEIEVMQ-LCSILEATSDGIAIINR---EG--IILSTNRAVSKLFGYPVEDILRKPF 497 +K IE M+ L S + ++D I I +G I+ N A +++ GY E++L + Sbjct: 822 AKKDSIERMRLLESAVVNSNDAIVIAAPDPSDGMPKIIYVNSAFTRMTGYAREEVLGRYP 881 Query: 498 TVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 S + L + + Q + + + K+ + + I + Sbjct: 882 DFLEGPETDRSKIMEILEAVRN---AQPVNQELVNYRKDGSRFWVELNIFPVRDHMGEVT 938 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + D +E + +++L ++ + + Sbjct: 939 HWVSIQRDTTERRVAEDRLRWSELLMRSMTES 970 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 29/235 (12%) Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 +D +V+ G + Y + + +L+ G+S ++ + + + Sbjct: 1 MDADQPAVYVFDEKGRIRYLSRTAEMLSG-----------GISKCRSIHEVLGVSCSESL 49 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + AR+ + + + +P + Sbjct: 50 ASAIASDAPSRIRARI------GCSGSEIPLSVIPLRDADGSRGLMIISDPSGSFREEGR 103 Query: 445 RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 E + L+ + + + E IL N +L GYP E+I +EQ Sbjct: 104 -----EERWYRTALDRCREAVFFVEAESRRILDANAVFQELLGYPPEEIHSLTLYDIMEQ 158 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + + EI+ + + E I T + + ++ + + Sbjct: 159 D-----REEIDEIIRHAMSRETESIQAYRTIDGSSIQMKGRFSPTEGDGTLCVIL 208 >gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing, putative heme-binding site [Geobacter sulfurreducens KN400] Length = 982 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 117/649 (18%), Positives = 229/649 (35%), Gaps = 52/649 (8%) Query: 176 SGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 SG RG + R N P R + F + ++ + + P + Sbjct: 79 SGIRGHITSLRPIRQANAPDNWETRALESFERGQQEYSSVELMDGVPHLRLMR---PLMV 135 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 Y+ D L + + + G + Sbjct: 136 EQSCLRCHPGPSYSVGDVRGGISVSVPLAPYSALARNKMAATGAGHLTFWAAGLGGIILA 195 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 + + + S + A +E L E ++ G + N F L Y Sbjct: 196 ARRITRDDRSLLLQQARLAESEERNRLLSEVAL---EGIVIHDRGIVQDMNARFAKLFGY 252 Query: 355 KSVDDIEIAGGLSTLLDAPKL--------SDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 +++E +S L + ++ V + D T + +Q Sbjct: 253 PR-EELEGINVISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVFDVEIEGYNLQHG 311 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ ++ + + R + + ++ E + Sbjct: 312 DKSVRVVSVR-------------------DITERRRAEEALRQSEALFRNLFEHHAAVKL 352 Query: 467 IINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 II+ G I+ N A +G+ E + ++E+ + + + Sbjct: 353 IIDPVSGAIVDANNAAVSFYGWSREQLRAMNIRDI----NMLSPEELVSELENAKNMERI 408 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++ + + + ++ +HD++E K+ + +L AK+ AE + Sbjct: 409 HFFFRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANR 468 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ +IG + ++ YA + S +L +++D Sbjct: 469 AKSEFLANMSHEIRTPMNGVIGMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDD 524 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SKIE+G++ + L + + + ANEK + +PR ++ D Sbjct: 525 ILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPV 584 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 +KQ+ +N+ NA+ FT G +I + T + ++ VRDTG+G+ + E + Sbjct: 585 RLKQVLVNLAGNALKFTHQG-EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFE 643 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q S + GTGLGL + K +V G+ + S P G+ Sbjct: 644 KFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWFT 692 Score = 46.2 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 25/293 (8%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 ++ K G ++ G+ + +S + H D + D + R ++ + +GT Sbjct: 242 MNARFAKLFGYPREELEGINV--ISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVF 299 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 V I+ L ++ V ++ + F +L E + Sbjct: 300 DVEIEGYNLQHGDKSVRVV------SVRDITERRRAEEALRQSEALFRNLFEHHAAVKLI 353 Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED--- 274 + S + D+ L++ E++ + Sbjct: 354 IDP--VSGAIVDANNAAVSFYGWSREQLRAMNIRDINMLSPEELVSELENAKNMERIHFF 411 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 F + + + + K S + + +E L E + Sbjct: 412 FRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESAN---- 467 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 A FL ++ + G++ LL L+D ++ Sbjct: 468 --------RAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVR 512 >gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1501 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 111/763 (14%), Positives = 241/763 (31%), Gaps = 43/763 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYG 145 D + I+ + + IG ++IG ++ D + + + Sbjct: 611 RYDRNLRYLYINPSIERIIGIPPEQLIGKTGIELGLIDPTSQAWYRTLEQVFNTGQHHWL 670 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + EG +P + + + L ++ +++ Sbjct: 671 EFEFPNPEGEL--HAYQARFVPELVEGEQITTV--LAVATDVTEYKRTELLLRQSEERLR 726 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA--------HKDDVLKTE 257 + + + V+ A + + Sbjct: 727 LAMAAAQMATWDVDLNTGKAFWSEHHFTMLGYEPVAGGEASEAMWSSCIHPEDLERVLQA 786 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLSAYFD 316 E N + + ++ + A Sbjct: 787 WQQARLDRTLYRAEYRVIRVDNGQIAWLMGLGSFTYDETGQAIRSIGVLLDISEQQAALQ 846 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVDDIEIAGGLSTL-- 369 E + + E + G + + +E L Sbjct: 847 ERKRVEDELRESEQRLQLAQQAGRIGTWDWNLLTNEVSWSDGIWPLLALEPKSVKPDLET 906 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 ++ + + I+ + + + Sbjct: 907 FTHFIHPEDREQAFRTVKLALAEGDDYYDEFRVIRQDGA-ICWLLSKGRVIRTPEGQPQR 965 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 GI + D + + + +L L + GI + ++ + + + G Sbjct: 966 LLGINVDITDRKQAEEALRQSEERLRLALLVSQSGIWDWDIVNKQITWSERIYQFHGLTP 1025 Query: 490 EDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + F + + + L+ + + E + L Sbjct: 1026 DTFGGTVAEFAALIHPEDRERVAAAIQRALAGE--SSYELEFRAVQPSGAIRWLSTTGGV 1083 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEI 596 + +DI++ K + + ++ AE + K +FLA +SHE+ Sbjct: 1084 IFDQQGQPVRMLGATNDITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHEL 1143 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 R+PL I+G++++++ + F P R + I+R+ L ++ DLLDIS+I GKM Sbjct: 1144 RSPLNPILGWTKLLQTRPFDP---QRTQQALQTIERNAKLQTQLIEDLLDISRILQGKMV 1200 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L+ PV+L + A+ V+L A K I ++T + + R+ D ++QI N+L+NA+ Sbjct: 1201 LNTSPVNLITTIEAALDTVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAV 1260 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP+GG+++I + ++V+DTG G++ L + F Q + + G GL Sbjct: 1261 KFTPAGGKVLIRLEQVDS-FAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGL 1319 Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818 GL + + + + + G + S +G + PL + D Sbjct: 1320 GLAIVRYLTEQHGGTVEVESRGEDQGASFTVHLPLMASDLTPD 1362 Score = 121 bits (303), Expect = 6e-25, Method: Composition-based stats. Identities = 57/588 (9%), Positives = 155/588 (26%), Gaps = 55/588 (9%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAH-GYLKEISE 100 NP + + Q + + + F+ + R + DA G L +E Sbjct: 153 NPIAGTTKLEAECRQVETERQHLSEALLSEKARFEAVLRQLPEGVMIADAATGNLILTNE 212 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDIL----------HIDPNNHIGDLLKRQNTWYGKTTLW 150 + + + + + + + L + + + + L Sbjct: 213 RADQLMRHSYALDFQLEAYESWVPFQAYRTNGQRYAPEDYPLVRSLRQGEIIAHEEMELR 272 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ +++ + A PI + + + A ++ + Sbjct: 273 FADGSQIFIDV--NAAPILDYQGQIT--SAVTVFQDISERKQLEAERQQALIQLQERQHF 328 Query: 211 KKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL----- 262 + + YD+ +Q++ + ++ + DD L + Sbjct: 329 IQQVADATPGTLYVYDMVAQRNIYVNRQIGELLGYTPADIQAYDDQLFAQLIHPEDLATI 388 Query: 263 ---------TSEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLS 312 + + + N + + + + + Sbjct: 389 GNQYTRLNQAQADEVIDYEYRMRHANGEWRWLWSRNTVSTRTPEGLAHLVVGTVQDITDR 448 Query: 313 AYFDEGENLTPETVDKCPIPF-------------FVYSHGNLFYANPSFLLLTKYKSVDD 359 + T + + F + + F L Y + Sbjct: 449 KQAELALQQTQVHLQRANERFELAAKAVNCLIYDWDVEQDRVER-TEGFTRLLGYSLEEA 507 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + +A L +D R + + Sbjct: 508 EPTGAWWRQQIHPEDVQRLSATAISNLLNNDLQICEYRVR----TKDNRYIYVLDQALVV 563 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + G + D + + +++ + + +++E T D I +R L N Sbjct: 564 CRDAKGYPTRMVGSTTDITDRKRAEAQLQQQEQEFRTLVENTPDVIIRYDRNLRYLYINP 623 Query: 480 AVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++ ++ G P E ++ K + L T L ++ + LE E Sbjct: 624 SIERIIGIPPEQLIGKTGIELGLIDPTSQAWYRTLEQVFNTGQHHWLEFEFPNPEGELHA 683 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 R + + + D++E+K+ + L +++ + Sbjct: 684 YQARFVPELVEGEQITTVLAVATDVTEYKRTELLLRQSEERLRLAMAA 731 Score = 75.8 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 29/282 (10%), Positives = 72/282 (25%), Gaps = 25/282 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIE--------IAGGLSTLLDAPKLSDNNAIKPV 384 V+ + N + L I G L ++ + Sbjct: 56 VLVWGRDRYLFFNDGYANLGLNSGPTLIPGQPLHNCSQPNGGELLTAIEQVFTTAQPQQQ 115 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ-FPENMPQNGIEPEDVDTRIN 443 +L + + W+ + + N + + + + Sbjct: 116 VLASQGMSGEQLWLWCFSPLWDGGQVGGVFATGCAELNPIAGTTKLEAECRQVETERQHL 175 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP-------VEDILRK 495 + E + ++L +G+ I + G ++ TN +L + Sbjct: 176 SEALLSEKARFEAVLRQLPEGVMIADAATGNLILTNERADQLMRHSYALDFQLEAYESWV 235 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554 PF + Y + + + + + + Sbjct: 236 PFQAYRTNGQRYAPEDYPLVRSLRQGEIIAHEEMELRFADGSQIFIDVNAAPILDYQGQI 295 Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 DISE KQ + + ++ A + + F+ +V+ Sbjct: 296 TSAVTVFQDISERKQLEAE----RQQALIQLQERQHFIQQVA 333 >gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 738 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 115/458 (25%), Positives = 198/458 (43%), Gaps = 12/458 (2%) Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFI 416 +E A L A + D S + + Sbjct: 33 QLEEALQLMRRARAELQPTVTCTEAPFRAPKDGGMERCSTYDREYRTLLPDGKVRWINTQ 92 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 N P GI + D + + + S++E + D + IN + I+ Sbjct: 93 GTTIPNPQGHGQPMTGISIDVSDRQRADDSLRRSEERYRSLVELSPDAVF-INLKNRIVF 151 Query: 477 TNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A +LFG + +L K + + V+ + + + + Q +E+ L Sbjct: 152 VNPAAVRLFGAASAQQLLGKSPFDLMHPDCHDVIRARIEQQRAGQIAQLIEEKVLRLDSS 211 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + + + + DIS+ K+ + L+ AK+ AE S KS+FLA +SHE Sbjct: 212 VIDVEVSAAPLNTEEGTAFQVILRDISDRKRAEQALATAKEQAEAASRAKSEFLANMSHE 271 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IR+P+ I+G +++++ EY N I S + +L ++N++LD+SKIE+GK+ Sbjct: 272 IRSPMNGIMGMAQLMEYTEL----TDEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKI 327 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 L SL ++ + + ++K + IRT P ++ D +KQI LN+L N Sbjct: 328 ELERSDFSLRASIDDIVKAHLSQIHDKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGN 387 Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 AI FT GG I ++ + +E V LR V DTG+G+ +E+ KPF Q +S + Sbjct: 388 AIKFTCRGGIGISVAVSERRDERVRLRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQY 447 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + + + GK + S G+ + P Sbjct: 448 GGTGLGLSICSRLAELMDGKITVESREGSGSTFSVHLP 485 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 57/251 (22%), Gaps = 26/251 (10%) Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT------ 277 + + L + E + E P +T E+ +D Sbjct: 14 LTELEEALSGLDTPDVTIRQLEEALQLMRRARAELQPTVTCTEAPFRAPKDGGMERCSTY 73 Query: 278 --------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----T 325 + T+ N S D+ + E Sbjct: 74 DREYRTLLPDGKVRWINTQGTTIPNPQGHGQPMTGISIDVSDRQRADDSLRRSEERYRSL 133 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 V+ P F+ + + NP+ + L S + L P D + Sbjct: 134 VELSPDAVFINLKNRIVFVNPAAVRLFGAASAQQLLGKSPFD--LMHPDCHDVIRARIEQ 191 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 IA ++ + + E I + D + ++ Sbjct: 192 QRA---GQIAQLIEEKVLRLDSS---VIDVEVSAAPLNTEEGTAFQVILRDISDRKRAEQ 245 Query: 446 KMEIEVMQLCS 456 + Q + Sbjct: 246 ALATAKEQAEA 256 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 12/132 (9%), Positives = 39/132 (29%), Gaps = 8/132 (6%) Query: 94 YLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151 + ++ + G A +++G D+ D I Q + + Sbjct: 148 RIVFVNPAAVRLFGAASAQQLLGKSPFDLMHPDCHDVIRARIEQQRAGQIAQLIEEKVLR 207 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 ++ + + ++++A P+ + + F+ I+ ++ K Sbjct: 208 LDSS--VIDVEVSAAPLNTEEG--TAFQ--VILRDISDRKRAEQALATAKEQAEAASRAK 261 Query: 212 KGHSSVEKEKYD 223 + + Sbjct: 262 SEFLANMSHEIR 273 >gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1705 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 148/799 (18%), Positives = 275/799 (34%), Gaps = 87/799 (10%) Query: 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDP---- 129 P D L++I + + G K++ G V + P Sbjct: 409 TPGGAPRPEV--ADRE-RLRQIQQTYIEETGLSNLKLLAPDGRVAIAVHALDADRPSQLA 465 Query: 130 ---NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA---ALPIYSRNR-------EFS 176 L + + TTL + + A PI F Sbjct: 466 TREPEAFARALAGEPVFIPPTTLDRPDEPTASARSESAMFILAPIRREAHIIGVLAMRFD 525 Query: 177 GFRGFGIV--------HVNRVDNDPRALGKRLDKKFSHLHEIKKG-------HSSVEKEK 221 FG + D +A + + + V Sbjct: 526 PALTFGRIGSIMRIGETGETYLLDRQARLLTPSRFSDTQALSVRIGDAPGFLNWRVRDPG 585 Query: 222 YDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL------------LT 263 D+ + Q+P P R+ V S + + + + Sbjct: 586 VDLTAGQAPTSEPSTWPLTRLAEAVLSGQDGLDVQGYRNYRGVPVMGAWSWSSRLGVGVA 645 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---EN 320 +E F L +L R L+ +E Sbjct: 646 TEIDLDEALAPFRDSRALILGALLSTVFLALALAAILVWLGERTRTRLNVLVEERTHELR 705 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + V++ P+ + G + + NP+F LT Y + I L L+ Sbjct: 706 KLAQVVEQNPLCIVITDVEGRIEHVNPAFTRLTGYAREEAIGENP----RLLKSDLNPPE 761 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + ++ N+ + + + + Sbjct: 762 LYVELWDTILSGRTWNGEICN---RKKDGEFYWVSVSIAPVTNRRGQVTHFVAMSQDLTE 818 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILR--- 494 R ++ +++ + +I+ + +L + + +L GYP + Sbjct: 819 RRRIDEELAARERLFRNLVSTIPGTVFRCLIDSDWTMLFISDEIERLSGYPASAFIHKGV 878 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 + +T + + + + + +S L T+E + +E ++ + + S+ Sbjct: 879 RTYTSLIHPDDVAHVEQLIDAAVSRHLPYTVEYRII--DREGRIHHVYEQGQASYDSAGA 936 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + T+ DIS+ K + +L AK++AE+ + KS FLA +SHEIRTP+ AIIG S + Sbjct: 937 PIDLAGTVIDISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLA 996 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + R Y + RS +L I+ND+LD SKIE+GK+++ L++ + Sbjct: 997 LQTEL----DARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDN 1052 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +LV L A EK + + +P ++ D + QI +N+ +NA+ FT GG+I+IS Sbjct: 1053 LANLVGLKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISV 1112 Query: 730 THTSNE--EVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 V V DTG+GM+ + + +PF Q S + GTGLGL ++ + Sbjct: 1113 RVMDQGADWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLT 1172 Query: 786 DANMGKFYIFSTPAKGTLI 804 + G+ + S P G+ Sbjct: 1173 ELMGGEIRVESAPGAGSTF 1191 >gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1] gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1] Length = 1117 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 125/696 (17%), Positives = 233/696 (33%), Gaps = 39/696 (5%) Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 P G A G G + R Sbjct: 35 RLPRHGRRSPRLRRAAGPDQRFLRGTRQGTPPVGPLDAADGRGTARRQPGIPAPGQGPPP 94 Query: 209 EIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + + P HLR++ + EY + + Sbjct: 95 GHSEHRGRRHRHRRPEWRHRQRQPRPALHLRLRARRGDRQEYRPPHPLAGLKGEAVSGMN 154 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322 +L + + + G L F + + E E Sbjct: 155 RIFALGRESMARRRGGASFPIELAAGDLTPTGSPQFVVIMRDISERKRIEREMAESEERF 214 Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + F+ + F T+ + D D A Sbjct: 215 RDFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRTLPD------HYVGRTRDEMISDDTPAE 268 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 ++ + + + E G + + Sbjct: 269 VRRQNLADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFDASGEFTGYRGTASDITEEI 328 Query: 442 INKRKM---EIEVMQLC----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + ++ + E+ +L SILE+ DGI I+ G NRA +KL + +++ Sbjct: 329 EAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVG 388 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552 + + + L +IL + ++ L + I + Sbjct: 389 SDILPLMALDLHTA--EKLYQILLRLTESIRDDTASFKRRDGSPLPVEYIASPVMDRGNQ 446 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L DI++ + + +L AK+ AE + KS+FLA +SHEIRTP+ +IG + ++ Sbjct: 447 VGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLL 506 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + R + +A I SG +L ++ND+LD SK+E+GK++L + L V Sbjct: 507 DTRL----SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESV 562 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + ++ A+ K I I + + + +D ++Q+ +N+ NA+ FT GG + I + Sbjct: 563 VDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGG-VSIEVS 621 Query: 731 HTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 VRDTG+G+ + F Q+ S R GTGLGL +++ + + Sbjct: 622 LLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAE 681 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY----DTSHPHD 818 G+ + S +G+ I PL ++ P D Sbjct: 682 LMGGEVGVESAVGRGSRFWITLPLELLAPQSAAPPD 717 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 43/415 (10%), Positives = 101/415 (24%), Gaps = 38/415 (9%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 +SE F D T + W + S + + +G ++ Sbjct: 204 EREMAESEERFR-DFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRTLPDHYVGRTRDEMIS 262 Query: 124 ILHIDPNNHIGDL-LKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 + + + ++G ++ + P++ + EF+G+RG Sbjct: 263 DDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLRV--NGKPVFDASGEFTGYRG- 319 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKV 240 + + K + L E + R K+ Sbjct: 320 -TASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKL 378 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSE----------ESSLPEQEDFHTINLNQYTKKQYFG 290 D+L L T+E ES + F + + + Sbjct: 379 LDFEPAELVGSDILPLMALDLHTAEKLYQILLRLTESIRDDTASFKRRDGSPLPVEYIAS 438 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + + L + + E + FL Sbjct: 439 PVMDRGNQVGVVLG-FRDITQRRLVERQLREAKEAAEAGN------------RTKSEFLA 485 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN---- 406 ++ + G++ LL +LS+ + S + + + Sbjct: 486 TMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGK 545 Query: 407 ---RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + GIE + + + + +L +L Sbjct: 546 LDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVL 600 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 35/357 (9%), Positives = 86/357 (24%), Gaps = 33/357 (9%) Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 ++ P+ + H I + + + R P L + T Sbjct: 2 RAAQPDHDHHHHIRALIVSSRPSSPPAAAPAGPRL-PRHGRRSPRLRRAAGPDQRFLRGT 60 Query: 326 VDKCP-IPFFVYSHGNLFYANP------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 P + + G + + Sbjct: 61 RQGTPPVGPLDAADGRGTARRQPGIPAPGQGPPPGHSEHRGRRHRHRRPEWRHRQRQPRP 120 Query: 379 NAIKPVMLYRSDRTCIA--------------------ASARLHTIQWNRENSLAMTFIPF 418 + R DR A R + S + Sbjct: 121 ALHLRLRARRGDRQEYRPPHPLAGLKGEAVSGMNRIFALGRESMARRRGGASFPIEL--A 178 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + I + + + +R+M + ++TSD + + + Sbjct: 179 AGDLTPTGSPQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFS 238 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEK 537 ++ + + + + +TP+ + L ++ + + T + Sbjct: 239 GQFTEHTRTLPDHYVGRTRDEMISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGR 298 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 L + Y T DI+E + + +L ++ E+ + + L V Sbjct: 299 FLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESV 355 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 25/247 (10%), Positives = 64/247 (25%), Gaps = 11/247 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID +G ++ K + +++G + + + LL+ + T Sbjct: 362 IDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKLYQILLRLTESIRDDTA 421 Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ +P++ A P+ R + GF + + Sbjct: 422 SFKRRDGSP--LPVEYIASPVMDRGNQVGVVLGF---RDITQRRLVERQLREAKEAAEAG 476 Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + K + + + R+ + E + L T +L Sbjct: 477 NRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDIL 536 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + +T + L + ++ P L Sbjct: 537 DFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRL 596 Query: 323 PETVDKC 329 + + Sbjct: 597 RQVLMNL 603 >gi|322421487|ref|YP_004200710.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127874|gb|ADW15434.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 1661 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 142/741 (19%), Positives = 259/741 (34%), Gaps = 33/741 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKT 147 +D G + ++++ + + G ++IG D DP + + + + Sbjct: 939 VDPDGIISDVNDRMCQMSGYARGELIGTPFTD----YFTDPALAMAGVEETFAKEVVTEY 994 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L + T + + A G F + L Sbjct: 995 ALTLVSRTRRLLQVSFNASVFRDPTGSVRGI--FASARDVTDHVRLNEQLREQQTYLRGL 1052 Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + I ++ ++ D L +E Sbjct: 1053 IESSVDGLITVDPEGFITDVNEQMCRMTGYLREELIGSQFRDYFTDPARAVTGVKLTLAE 1112 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENL 321 T + T + + L A + + Sbjct: 1113 GVVTNYDLVLKTKTGRKATVSFNASVFRAADGRVQGIFASARDVSEQARLQAQLSDQQAY 1172 Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 ++ F + G + N LT Y I G S+ P+L+ Sbjct: 1173 NRSLIEASADALFAIAPDGTITDVNEEATRLTCYSRKHLI--NSGFSSYFTDPELASAGV 1230 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + L T + ++F ++ + + + + Sbjct: 1231 RQTLSR----GRVLTYELVLIT---RHNRRIPVSFNAGVFSDAAGKQIGILAGARDITEQ 1283 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++++ + S++E+ D + + GII N+ + L G+ ED++ PF + Sbjct: 1284 KKLEQQLRDQQFYARSLIESNIDALMTTDPVGIITDVNQQMEALTGHSREDLIGTPFKRY 1343 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558 + +L E L E ++S Sbjct: 1344 FI--DQERAEEGIRRVLREGKVTNYELTALSKQGRETVVSYNAATFADREGKLQGVFAAA 1401 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E K + L E + K FLA +SHE+RTPL AIIGF+ + + GPL Sbjct: 1402 RDVTERKSFEKTLEEKGHEMENANLAKDRFLASMSHELRTPLNAIIGFTGTLLMRLPGPL 1461 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + I S +L ++NDLLD++KIESGK+ ++ EPVS V E + Sbjct: 1462 TGDQEKQ-LSNISTSAKHLLLLINDLLDLAKIESGKVEINPEPVSCRALVQEIAGTLTPM 1520 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNE 735 A K + + + + I D R++ QI +N+ NAI FT G ++ I+ + + Sbjct: 1521 AENKGLKLSLAAEGD-RTINTDRRALSQILINLAYNAIKFTQQG-EVRIAVSFDAGEGGD 1578 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV + V DTG+G+ E K + F Q+ +S R EGTGLGL L++ +V+ G + Sbjct: 1579 EVEISVTDTGLGIKQEEQAKLFRAFTQVDSSSSRRFEGTGLGLYLSQKLVELLDGHIVME 1638 Query: 796 STPAKGTLIEIIFPLYDTSHP 816 S KG+ ++ P P Sbjct: 1639 SEYGKGSRFAVVLPARGVGIP 1659 Score = 155 bits (392), Expect = 3e-35, Method: Composition-based stats. Identities = 60/498 (12%), Positives = 127/498 (25%), Gaps = 27/498 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYGK 146 D G + +E + G +++G + ++L W G Sbjct: 192 DLDGKILLWNEGARRLYGYEPEEVVGKANSSILHTDEDVTAGRPREILASALHNGKWEGT 251 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + + P G+ I + K Sbjct: 252 INRRRKNGDLFTARVVI--TPRRDSLGRAIGY--LLISKDITDEIRLTEKLKSTQFYTRS 307 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L E I L ++++ D E L+ Sbjct: 308 LIESNIDALMTTDPLGIISDVNKQMVTLTGYTRDELIGSPFKNYFTDSERAEEGIKLVLR 367 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E + + T ++ + + ++ + Sbjct: 368 EGKVTNYELTALSKAGQPTVVSYNASTFRDAEGRLQGVFAAARDITEQKELEKRLRDSEA 427 Query: 325 ----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 ++ V G + N ++ Y D I + + Sbjct: 428 YNRGLIEASVDGLITVDRSGAISDVNARMCQMSGYTREDLIGTP------FIDYFMDSDR 481 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A V + + + T L ++F + + + Sbjct: 482 ADLGVKRTFEEGVVTDYALTMAT---RDGEKLVVSFNASVFLDSSGAVRGIFASARDITE 538 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ E ++EA+ DG+ ++ II N + ++ GY E+++ PF Sbjct: 539 QAGLQNQLSEERAYNRGLIEASLDGLITVDPMLIITDVNETMCRMSGYSREELIGTPFPD 598 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557 + P + L E G E+L+S I K + Sbjct: 599 YF--TDPRRAAEGVRLTLDRGAATNYELTLSGKEGNEQLVSFNAAIFKDETGAVRGIFAS 656 Query: 558 MHDISEWKQEKNKLSHAK 575 DI+E + + +LS + Sbjct: 657 ARDITEQARLQTQLSEER 674 Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats. Identities = 55/500 (11%), Positives = 134/500 (26%), Gaps = 25/500 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + +++E + + G ++IG D + L R + T Sbjct: 567 VDPMLIITDVNETMCRMSGYSREELIGTPFPDYFTDPRRAAEG-VRLTLDRGAATNYELT 625 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L EG + A G F + L Sbjct: 626 LSGKEGNEQ--LVSFNAAIFKDETGAVRGI--FASARDITEQARLQTQLSEERAYNRGLI 681 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E E I R +N++ + + E L E Sbjct: 682 EASVDGLVTVDEAMIITDVNETMCRMAGRRRNQLIGSSFPTYFSERQRAEEGVRLTFKEG 741 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT---- 322 + + ++ + + + + N + Sbjct: 742 AVTNYVLTLELSDGRLAPVSFNAAVFKDRLGKVRGIFASARDITEQKKLESQLNASQLYT 801 Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ++ G + N LT Y + I + A Sbjct: 802 RSLIESNIDALMTTDPVGVVTDVNEQMEWLTGYTRDELIGVP------FKNFFTDPGRAE 855 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + L + + Q +++ A++ + + + + Sbjct: 856 DGIRLVLREGKVTNYELTALSKQ---GKETVVSYNATTFADREGKLQGVFAAARDITEQK 912 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++ ++EA+ DG+ ++ +GII N + ++ GY +++ PFT + Sbjct: 913 KLELQLRDSQAYNRGLIEASIDGLITVDPDGIISDVNDRMCQMSGYARGELIGTPFTDYF 972 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMH 559 P++ + E + ++ + T+ +S + + P + Sbjct: 973 --TDPALAMAGVEETFAKEVVTEYALTLVSRTRRLLQVSFNASVFRDPTGSVRGIFASAR 1030 Query: 560 DISEWKQEKNKLSHAKKIAE 579 D+++ + +L + Sbjct: 1031 DVTDHVRLNEQLREQQTYLR 1050 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 64/535 (11%), Positives = 144/535 (26%), Gaps = 48/535 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D G + +E + G +++G + + +L+ R+ W G Sbjct: 49 DLDGTILLWNEGARRIYGYQPEEVVGKANSSILHTEEDLKSGKPAQMLEAALREGKWEGT 108 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF----------------------GIV 184 G + + P N + GF IV Sbjct: 109 INRRRKSGEVFTARVVV--TPRRDDNGKAIGFLLISKDVTDEVRFSDQIRKAKLFDSAIV 166 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + D ++S + + G + E P + N T Sbjct: 167 SNAQEAVDFITNILESSTEYSVIGKDLDGKILLWNEGARRLYGYEPEEVVGKANSSILHT 226 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + L + + N + +T + +++ + YL Sbjct: 227 DEDVTAGRPREILASALHNGK---WEGTINRRRKNGDLFTARVVITPRRDSLGRAIGYLL 283 Query: 305 HRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + E T ++ G + N + LT Y + Sbjct: 284 ISKDITDEIRLTEKLKSTQFYTRSLIESNIDALMTTDPLGIISDVNKQMVTLTGYTRDEL 343 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 I A + + L + L + + +++ Sbjct: 344 IGSP------FKNYFTDSERAEEGIKLVLREGKVTNYE--LTALSKAGQP-TVVSYNAST 394 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + + ++++ ++EA+ DG+ ++R G I N Sbjct: 395 FRDAEGRLQGVFAAARDITEQKELEKRLRDSEAYNRGLIEASVDGLITVDRSGAISDVNA 454 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + ++ GY ED++ PF + + + + + + E+ ++ Sbjct: 455 RMCQMSGYTREDLIGTPFIDYFMDSDRADL--GVKRTFEEGVVTDYALTMATRDGEKLVV 512 Query: 540 SLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 S + + DI+E +N+LS + D L V Sbjct: 513 SFNASVFLDSSGAVRGIFASARDITEQAGLQNQLSEERAYNRGLIEASLDGLITV 567 Score = 140 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 48/498 (9%), Positives = 120/498 (24%), Gaps = 29/498 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + I +L+ + T Sbjct: 319 TDPLGIISDVNKQMVTLTGYTRDELIGSPFKN-YFTDSERAEEGIKLVLREGKVTNYELT 377 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + A G F + + + L Sbjct: 378 ALSKAG--QPTVVSYNASTFRDAEGRLQGV--FAAARDITEQKELEKRLRDSEAYNRGLI 433 Query: 209 EIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E I + + + D E Sbjct: 434 EASVDGLITVDRSGAISDVNARMCQMSGYTREDLIGTPFIDYFMDSDRADLGVKRTFEEG 493 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLT 322 T + + ++S + + A E Sbjct: 494 VVTDYALTMATRDGEKLVVSFNASVFLDSSGAVRGIFASARDITEQAGLQNQLSEERAYN 553 Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ++ V + N + ++ Y + I A Sbjct: 554 RGLIEASLDGLITVDPMLIITDVNETMCRMSGYSREELIGTP------FPDYFTDPRRAA 607 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + V L L + N ++F ++ + + Sbjct: 608 EGVRLTLDRGAATNYELTLSGKE---GNEQLVSFNAAIFKDETGAVRGIFASARDITEQA 664 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++ E ++EA+ DG+ ++ II N + ++ G ++ F + Sbjct: 665 RLQTQLSEERAYNRGLIEASVDGLVTVDEAMIITDVNETMCRMAGRRRNQLIGSSFPTYF 724 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLT 557 + + + + +L + +L + Sbjct: 725 SE--RQRAEEGVRLTFKEGA--VTNYVLTLELSDGRLAPVSFNAAVFKDRLGKVRGIFAS 780 Query: 558 MHDISEWKQEKNKLSHAK 575 DI+E K+ +++L+ ++ Sbjct: 781 ARDITEQKKLESQLNASQ 798 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 56/150 (37%), Gaps = 8/150 (5%) Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L +I +++++ I + +G IL N +++GY E+++ K + L Sbjct: 30 KEFLANIFQSSTEYSIIGKDLDGTILLWNEGARRIYGYQPEEVVGKANSSILHTEEDLKS 89 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565 + + E K ++ + R+++ + + L D+++ Sbjct: 90 GKPAQMLEAALREGKWEGTINRRRKSGEVFTARVVVTPRRDDNGKAIGFLLISKDVTDEV 149 Query: 566 QEKNKLSHAK---KIAEKESSHKSDFLARV 592 + +++ AK + DF+ + Sbjct: 150 RFSDQIRKAKLFDSAIVSNAQEAVDFITNI 179 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/249 (8%), Positives = 49/249 (19%), Gaps = 7/249 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + I G + +++EE + +I + + L R Sbjct: 1184 LFAIAPDGTITDVNEEATRLTCYSRKHLINSGFSSYFTDPELASAG-VRQTLSRGRVLTY 1242 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L N +P+ A + G + Sbjct: 1243 ELVLITR--HNRRIPVSFNAGVFSDAAGKQIGI--LAGARDITEQKKLEQQLRDQQFYAR 1298 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L E I + + D E + Sbjct: 1299 SLIESNIDALMTTDPVGIITDVNQQMEALTGHSREDLIGTPFKRYFIDQERAEEGIRRVL 1358 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + + + T + + + + F++ Sbjct: 1359 REGKVTNYELTALSKQGRETVVSYNAATFADREGKLQGVFAAARDVTERKSFEKTLEEKG 1418 Query: 324 ETVDKCPIP 332 ++ + Sbjct: 1419 HEMENANLA 1427 >gi|298248783|ref|ZP_06972588.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551442|gb|EFH85308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 981 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 104/738 (14%), Positives = 230/738 (31%), Gaps = 41/738 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143 F W GY+ +++ L ++ + G ++ + Sbjct: 267 FVWIARPDGYVTYLNQRLLDSLALTHEQAEGDGWLAGVHPDDRQRVWEAWQTSIQAGEPY 326 Query: 144 YGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +GT Y +P + R G K ++ Sbjct: 327 --EVGHRMQDGTSGAYRWFLARGMPQRNAQGTI--LRWVGTCTDIEEQKRVEQQLKASEE 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTE 257 + L E + + + + H DD + Sbjct: 383 NWRVLAETVPQFVWTIQPDGSAMYFNQRYYDYTGASPEQALGHGWSQFLHPDDSEQARAL 442 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD- 316 + LL + E+ E N +++ + + ++ + Sbjct: 443 RRHLLATGEAYEIEYRLREGKTGNYRWFLARAMPVRDETGQIVKWFGTSTDIEEQKRAEQ 502 Query: 317 ---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E E + P + G Y N + T ++ + G Sbjct: 503 WIKESEENLRVLAETVPQLVWTARPDGRHEYTNQHWCDYTGLT-LEHFQSDGWAHLQFIH 561 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P ++N + RL Q ++ + + G Sbjct: 562 PDDRESNRV-LGQHALDTGELFEHEERLREGQT--GAYRWFLTRALPVRDEAGQIVKWFG 618 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + + + +++ + G + I+ N ++ GY ED+ Sbjct: 619 TSTDIDEQKRIEEALRESQERASTLMNSNIIGTFV-GEGEQIVDANDTFLRMTGYTREDL 677 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + K+ L + + L Sbjct: 678 RAGRINWMHMTPPEYLTRTLEAHKELAAQPSLAPYEKEYVCKDGSRLPVLVGGVVLEHHP 737 Query: 553 CYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 ++ D S K+ + + K DF+ SHE+RTPLT + + + Sbjct: 738 RQAIIFVLDNSARKELEQR--------------KDDFINMASHELRTPLTVVKLQT-HLV 782 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++R + ++R + ++ +LLD+S++++G++ +E V LDE + E Sbjct: 783 HKRLEKHSQHEAATALSRVERPIEQLERLIAELLDVSQMQTGRLKYIWERVDLDELLREI 842 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +Q + I++R + + + D ++Q+ N+LSNAI ++P+ + + + Sbjct: 843 ADTMQRMSPSHTIVVRGTVQTS---VTGDRDRLRQVFTNLLSNAIKYSPNAKTVEVELSA 899 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V +RV+D G+G+ + +K + F + G G+GL + +V + G Sbjct: 900 SEEA-VTIRVQDHGLGIPREKHKKIFERFYRATGLSHETIPGLGMGLYIVAEIVKGHGGT 958 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S KG+ + P Sbjct: 959 ITVESDVGKGSTFTVTLP 976 Score = 124 bits (311), Expect = 7e-26, Method: Composition-based stats. Identities = 55/509 (10%), Positives = 134/509 (26%), Gaps = 26/509 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + +G ++ G L + H+ + + K + T Sbjct: 32 VDDATTIVYTNASAQAMLGATREELCGTSLWRGAP--HLVSPSLYQAVRKTRQTREPTNV 89 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + T+ ++ + L+ G H R + + + + + Sbjct: 90 AYVSPTTHSWLHVQLSP--------TVGGLM--LHFHEGRAPTRRQESFSQSEHLCADIL 139 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E ++ I + P +R + V + E Sbjct: 140 ENISDWLAILAPDGMILAINQRPLEDAQVRREEIVGRSLAETPWWSYAPAVLQRLRAAIE 199 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPE 324 ++ E F + Q ++ + + + + L + E+ Sbjct: 200 QACKGETVRFDSRICPQPGWYLDLAVTIAPHFDANKQVEYLLYVGLDITKRKQVEDELRT 259 Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 VD P ++ G + Y N L E G L+ + + Sbjct: 260 LVDALPQFVWIARPDGYVTYLNQRLLDSLALTHEQA-EGDGWLAGVHPDD---RQRVWEA 315 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 R+ + N + G + + + Sbjct: 316 WQTSIQAGEPYEVGHRMQDGTS--GAYRWFLARGMPQRNAQGTILRWVGTCTDIEEQKRV 373 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++++ + E + I +G + N+ G E L ++ FL Sbjct: 374 EQQLKASEENWRVLAETVPQFVWTIQPDGSAMYFNQRYYDYTGASPEQALGHGWSQFLHP 433 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHD 560 + +L+ +E G T + R + + + T D Sbjct: 434 DDSEQARALRRHLLATGEAYEIEYRLREGKTGNYRWFLARAMPVRDETGQIVKWFGTSTD 493 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 I E K+ + + +++ + + Sbjct: 494 IEEQKRAEQWIKESEENLRVLAETVPQLV 522 Score = 84.3 bits (207), Expect = 8e-14, Method: Composition-based stats. Identities = 33/406 (8%), Positives = 100/406 (24%), Gaps = 19/406 (4%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 R D + L + V+ +++ S L + T + Sbjct: 4 AKQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTSLWR 63 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 ++ Y + + + + R Sbjct: 64 GAPHLVSPSLYQAVRKTRQTREPTNVAYVSPTTHSWLHVQLSPTVG--GLMLHFHEGRAP 121 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 F + E+L + ++ + + G + N L + + ++I Sbjct: 122 TRRQESFSQSEHLCADILENISDWLAILAPDGMILAINQRPLEDAQVRR-EEIVGRSLAE 180 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 T + + ++ + + +R+ L + + + Sbjct: 181 TPWWSYAPAVLQRLRAAIEQACKGETVRFDSRICPQP---GWYLDLAVTIAPHFDANKQV 237 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + + +L ++++A + I +G + N+ + Sbjct: 238 EYLLYVGLDITKRKQVE-------DELRTLVDALPQFVWIARPDGYVTYLNQRLLDSLAL 290 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E + + + + + + T Sbjct: 291 THEQAEGDGWLAGVHPDDRQRVWEAWQTSIQAGEPYEVGHRMQDGT-SGAYRWFLARGMP 349 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + T DI E K+ + +L +++ + F+ Sbjct: 350 QRNAQGTILRWVGTCTDIEEQKRVEQQLKASEENWRVLAETVPQFV 395 Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 84/275 (30%), Gaps = 24/275 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N + ++ P FF V + Y N S + + + Sbjct: 1 MSNAKQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTS 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P L + + V R R + T + L + P Sbjct: 61 LWRGA----PHLVSPSLYQAVRKTRQTREPTNVAYVSPTTH----SWLHVQLSPT----- 107 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVS 482 + + + +++ + L ILE SD +AI+ +G+IL+ N+ Sbjct: 108 ----VGGLMLHFHEGRAPTRRQESFSQSEHLCADILENISDWLAILAPDGMILAINQRPL 163 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSL 541 + E+I+ + + + L + +T+ + + L L Sbjct: 164 EDAQVRREEIVGRSLAETPWWSYAPAVLQRLRAAIEQACKGETVRFDSRICPQPGWYLDL 223 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572 + I ++ DI++ KQ +++L Sbjct: 224 AVTIAPHFDANKQVEYLLYVGLDITKRKQVEDELR 258 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 7/153 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + +R L +ILE D +++ I+ TN + + G E++ Sbjct: 5 KQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTSLWRG 64 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + + + ++ + L +++ L H+ Sbjct: 65 APHLVSPSLYQAVRKTRQTREPTNVAYVSPTTH---SWLHVQLSPT----VGGLMLHFHE 117 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + S ++ + + SD+LA ++ Sbjct: 118 GRAPTRRQESFSQSEHLCADILENISDWLAILA 150 >gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 938 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 132/804 (16%), Positives = 265/804 (32%), Gaps = 64/804 (7%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 +N+ + + L + + +RF A G + + + G + Sbjct: 5 ARENERLRAEIDRLAIYRDMIENAPDLVMRF----SAEGRVLFANPAIEGLTGLRPKMTL 60 Query: 115 GMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G+ ++ + + +++ + TL+ ++G V + Sbjct: 61 GLTPQEIGFPQEDSERIHQAVLEVIATGQGLLDEVTLYTLQGE---VILQFRYALQRDAQ 117 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-EIKKGHSSVEKEKYDIFSQQSPP 231 + GF + + ++ L E+ +S+ Sbjct: 118 GHGAAVLGFA--RNITREKRLERSHRLAKEQAEALASEVSTILASMVDGVGVYGPGGELR 175 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK----- 286 R + + + L T + LP+ + L T Sbjct: 176 YMNRAGEAILDRSLEERCMSMRDRWALLRLETPDGHVLPDDQRPVFRALQGETVHYEQLV 235 Query: 287 -----------QYFGTLQNNSKESFEYLSH-----------RNHPSLSAYFDEGENLTPE 324 ++N ++ + L A L Sbjct: 236 IRRGCGGKLICLSAAPIRNAEGTLLGAVATFKDMTHKHALEQQREELLAALKAERALLQA 295 Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 P V G L ANP+ + + + P + Sbjct: 296 VFKSAPGGILVTDPFGRLTMANPAADNIRGEPYPIGRTVWEIEDFTILRPDGRPWPKDEL 355 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + I+ R+ IQ N + ++ G+ + + Sbjct: 356 PLERSALHGEISERVRMSFIQPNGARREIL-CNTAPIRDEQDRPTGAVGVFQDITELCET 414 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + ++ +++E D I ++R+ N A K G + + T Sbjct: 415 MEALRVSRNEIRTLVENVPDLIVRVDRQYCRTYINHAWEKYTGRSAAEYINTHITEPFLP 474 Query: 504 NTPS---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556 L E + R++ + + L I S + Sbjct: 475 ERADYLVPYRKALDEAFATGERRSFDCSYRTRLG---VAHLSTFIIPEFSSDGEVESALV 531 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D++ K +++L AK+IAE+ S KS+FLA +SHEIRTPL ++G +E+ Sbjct: 532 LARDVTALKALEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTEL----AES 587 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 R + + SGN +L ++ND+LD+S+IE+G++ + L V + Sbjct: 588 ATLEERTRHFLHLARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMS 647 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 + A +K +L+ IP +L D ++QI +N++ NA+ FT GG +++ T Sbjct: 648 VLAEQKGLLLECRLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRA 707 Query: 732 TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ V DTG+G+ + F ++ NS + GTGLGL + + +V+ Sbjct: 708 VGQGDIRLLFSVSDTGIGIDKATFRTIFENFTRLDNSAEQV--GTGLGLSICRRLVEMMG 765 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT 813 G+ ++ S G+ + P Sbjct: 766 GRIWLESEVGVGSTFHVSLPFGQQ 789 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 7/161 (4%) Query: 438 VDTRINKRKMEIEVMQL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 D ++ E+ +L ++E D + + EG +L N A+ L G + L Sbjct: 2 ADLARENERLRAEIDRLAIYRDMIENAPDLVMRFSAEGRVLFANPAIEGLTGLRPKMTLG 61 Query: 495 KPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 Q ++ + E+++ + L+++TL + + E +L R +++ Sbjct: 62 LTPQEIGFPQEDSERIHQAVLEVIATG-QGLLDEVTLYTLQGEVILQFRYALQRDAQGHG 120 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +I+ K+ + AK+ AE +S S LA + Sbjct: 121 AAVLGFARNITREKRLERSHRLAKEQAEALASEVSTILASM 161 >gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 926 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 147/819 (17%), Positives = 283/819 (34%), Gaps = 73/819 (8%) Query: 18 CKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFD 77 C +T D+ ++ + + + P + EQ+ +++ S + S V + Sbjct: 8 CSKDTGDVPSRE----YLVQLASSAEPGAQAEEQTGLQNRDAYLQSILRAIPSGIGLVVN 63 Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGD 135 +KE++ + +G +++ + SD + Sbjct: 64 R---------------VIKEVNLRFCEILGYTRDELVNQSSRMLYLSDEEYAYVGAEKYR 108 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPR 194 + + + + + +G L + L++ I + F V Sbjct: 109 QIAQFGSGTVEVRMRRKDG--LIINTLLSSTTIDSDDLSQGVTF----TVLDITSLKQAE 162 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--------EY 246 A+ + ++K+ L E + ++ S P + + + LT Sbjct: 163 AMLRESEEKYRSLIEQSIQGMIIAQDNPPRVCFASKPMAVIIGYSPAELTSFSSKELLAL 222 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTL--QNNSKESFEYL 303 D + + +E N + + T+ + + + Sbjct: 223 VHPDDRQSYRNAFHDCINSHLQQIRREFRMVHKNGKIRWVELFGTTILYEGDPAIQTVMV 282 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKSV 357 + E D FV+ G N S + Y Sbjct: 283 DITERKHAEEELVKSGEKLSELFDNIRDGLFVHPVLEGGVPGKFEMVNRSASDILGYSEQ 342 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + AP + + L + I +N ++ Sbjct: 343 ELL---NMSPQDIYAPVFPCTGIDREITLLNEPGSQI------FEAVQRHKNGTSVPVEV 393 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + + +M+ ++ + L+ + + I N I Sbjct: 394 STGRIEISGRSSIISTVRDITTRKRSYEEMK----KITTALQQSPAVVVITNAHAEIEYV 449 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N S+L G+ E++ K V L L K + Sbjct: 450 NPRFSELTGFAAEEVSGKNPKVLQSGLMSKETYRQLWITLKAGK--VWRGEFFNKKKNGE 507 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 L II + Y DI+E K+ ++L AK+ AE+ K+ FL +S Sbjct: 508 LYWENAIIAPVKNEQGDITNYVAVKEDITERKRLWSELVAAKEKAEESDRLKTCFLENMS 567 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ I+GFSE++K EY I +SG +L I+NDL+DISKIE+G Sbjct: 568 HEIRTPMNGILGFSELLKEPLLDGSKKD---EYIELIHQSGKRMLSIINDLIDISKIEAG 624 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNI 711 ++ + + SLD+ + + + A K +L+ + + I+ D + QI N+ Sbjct: 625 EIAIQYTEASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTDKSRLVQILTNL 684 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + NA+ +T SG I T N + + VRDTG+G+ ++ EK F Q Sbjct: 685 VQNALKYTASG---EICFGCTKNGDFLDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVRE 741 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EG GLGL ++K++V+ G+ + S+ +G++ P Sbjct: 742 YEGVGLGLSISKSLVELLGGRIGVQSSAGEGSVFSFSLP 780 >gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 892 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 141/785 (17%), Positives = 273/785 (34%), Gaps = 70/785 (8%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 N T + +E N +S VFD + F +D G + + ++ + Sbjct: 2 QNSTHKGEEKERNAQQRESTLNAVFDAVDEPA-FI--MDREGTILDANQAFARVYHKEVP 58 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 I +++ P +K + + + + PI Sbjct: 59 ACI-----NINAYDFFPPELAATRRIKAEEVFCTGRRMIYED-EQEGHCYRNTLYPIAGL 112 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + S + + + + F L E G + ++ + + Sbjct: 113 DGRTS--QLYIVAQDITDLKRAERDAETTQTLFGALKEAVPGAFYMLDAEWHYAAWNAYQ 170 Query: 232 PHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + R ++S T A D + +S + E + + + + Sbjct: 171 RDVVVGRPDAAMASFTAIDAIHPDDRSKVGEKMANIMKSGVEESDVVRVLIQGGPRFRWF 230 Query: 289 FGTLQNNSKESFEYLSHRNHPSLS------AYFDEGENLTPETVDKCPIPFFVYS--HGN 340 + + + +L E + D+ V GN Sbjct: 231 QLSGKRVFIKEKPFLIGVGTDVTEHKMKEDEALHNSEERLRKLFDEHSAVKLVLDPLTGN 290 Query: 341 LFYANPSFLLLTKYKSVD---------DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + AN + + + D L LL+ ++S+ N P R+D Sbjct: 291 IIDANHAAAAFYGWSIDELCRKHIREVDTHPEEELKHLLEQDRVSEKN-QFPFQHRRADG 349 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + I L I + + R +R+++ Sbjct: 350 SLRDVEVFSSNINVGGRELLY-------------------AIVHDVTERRAAERELQ--- 387 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L ++ + + I + +G I N A + GY E+++ K + + Sbjct: 388 -KLSVAMQQSHAIVVITDLKGDIEYVNPAFTIASGYSQEEVIGKNPRILQSGTMQQSVYE 446 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567 L + + K + +I + + DI+E K+ Sbjct: 447 ELWGTILAG--GVWKGEMYNRRKNGEFYWESAVISPVLNEEGVITNFVAIKEDITEKKKL 504 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++L AK+ AE+ K+ FLA +SHEIRTP+ I+G SE++K+ L Y Sbjct: 505 WSELIAAKEHAEESDRLKTAFLANISHEIRTPMNGIVGLSEILKD---PDLSKEEQSLYI 561 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + ID+S +L ++ND++DIS+IE+GK N+ ++ + + + + A +K + + Sbjct: 562 DLIDQSCQRLLYLINDIIDISRIEAGKTNVKISRTPVNTTLRDLHAFFKPLAEQKGLRLS 621 Query: 688 TS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDT 744 + +++ I D + QI N+L NA+ FT G I + N + V D+ Sbjct: 622 CTTGLSDSESVIETDSTKLTQILTNLLQNALKFTREG---HIDFGYARNKNTLEFYVADS 678 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G++ K + F Q NS EG GLGL +++A ++ G + ST KG+ Sbjct: 679 GIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLSISQAYIEMLGGLISVKSTEGKGSEF 738 Query: 805 EIIFP 809 P Sbjct: 739 IFTLP 743 >gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1658 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 123/735 (16%), Positives = 255/735 (34%), Gaps = 33/735 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 + I+ + G + ++ G + + Sbjct: 693 NGEFCYVSINPTHERMSGLLSSELSGKTPQEALTPETAQAVSQRYHACVASGERMSYEEC 752 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 I+G + I P+ N +R G +D + + K L + + + Sbjct: 753 LQIQGKETW-WIT-NLTPLRDSNSRI--YRLIGTSFNI---SDRKQVEKTLQLQAAAMSA 805 Query: 210 IKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 G + + + + Q+ ++ + + + Sbjct: 806 ATDGIAILNQRGEYVCLNQAHAQIFGYDSAAQLLGQNWQTLYDISEYQRLLAESIPLLLE 865 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTPETV 326 + + + + T E + A E ++ Sbjct: 866 QGYCRTEAQGLRRDGSTFPHEVSVTLLPGGERIGIVRDITERKQAEAALRESQHFVQRIA 925 Query: 327 DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKP 383 + P +++ YAN + Y + A L TL+ L+ A Sbjct: 926 EASPNLLYIFDLNEQRNIYANREMAVFLGYTTEQIQAMGANVLPTLIHPEDLARLPAYFQ 985 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRI 442 + +D R ++ + G + + + Sbjct: 986 QVQNAADGEIFEIEYR---VRDANGEWRTLLGRETPFARTADGRVTQLLGTATDITERQQ 1042 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVF 500 + ++ + A G+ N E + + + GY +I + + Sbjct: 1043 MEAALQESEQRYELATRAAKVGVWEWNLETNKFYIDPIIKAILGYDETEIANNFNDWIIL 1102 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + + S L+ K+ + + + + + Sbjct: 1103 IHPDDQSTFLTATQAHLA-GETSEYRVEHRIMHKDGSIRWIVVRGQAIRDVQGKGIRMIG 1161 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI+E K + L AK+ A+ + KS FLA +SHE+R+PL AI+GF++++ N Sbjct: 1162 TNTDITERKLAEIALQEAKEAADAANRAKSTFLANMSHELRSPLNAILGFAQLMSNSVTL 1221 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P +Y + I SG +L ++N +LD+SKIE+G++ L+ +L + E + + Sbjct: 1222 P---QQYQDNLRIIHHSGEHLLTLINQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFR 1278 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 L NEK + +R ++A ++P I D ++Q+ +N++SNA+ FT +G ++ +N+ Sbjct: 1279 LKVNEKGLQLRFNWAADVPATIQTDEIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRTND 1338 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + ++DTG G+ ELE + F Q + Q + TGLGLP+ + + G+ Sbjct: 1339 DGRMTLYFEIKDTGCGIAADELESIFEAFVQSQSGVQSQSG-TGLGLPITRKFIQLMGGE 1397 Query: 792 FYIFSTPAKGTLIEI 806 + S ++GT Sbjct: 1398 IRVESQVSQGTTFTF 1412 Score = 118 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 69/580 (11%), Positives = 156/580 (26%), Gaps = 42/580 (7%) Query: 28 KKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW 87 +++D + + ++ + +S+ +++ F + + Sbjct: 245 QQLDYQLQIKNQWRDYEARIVPCSNQEILSIIRDISDRKQAEAQIAFQASLLDQVSNAVI 304 Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGK 146 D G + ++ + ++G + DV+ I ++ W G+ Sbjct: 305 ATDLAGTIIYTNQFAQRIYQLNPETILGQSILDVTVLPQDKALAQEILAGVQENGYWEGE 364 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T+ +G+ P+ I G+ G I + ++ Sbjct: 365 FTVQRQDGSTF--PVYATNTLIRDHQGNPIGYVGVSI--DSSAQKQAEEQLRQSKHFIEQ 420 Query: 207 LHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKY 259 + + E +I+S Q L + H DDV + Sbjct: 421 IAAASPYCLYIYDLIENRNIYSNQEITTILGYTPEQIQAMGETFISSLLHPDDVTIASEQ 480 Query: 260 PLLTSEESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSL 311 + + E D H + ++ F + + + + Sbjct: 481 LQKLATAADGEILEIEYRMQDSHGKWHTLFGRETVFARTSDGTVKQVIGTVIDISDRKQA 540 Query: 312 SAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLST 368 E L P F + A+ S S + +E Sbjct: 541 EIELRNSEQLYRTMAKHFPNGAIFLFDHNLRYLVADGQSLGKSGSGYSRNVLEGQTIWEA 600 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L + + + I +H +Q N E M Sbjct: 601 LSEPECALVEPLYRDALAGIEQTLEIPYRHCIHLVQTR------------AVQNDAGEIM 648 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGII--LSTNRAVSKL 484 + + + + + + L SI + + I++ G +S N ++ Sbjct: 649 AGMVVVQDITERKQAEESLRERETFLRSIYDGIEAAVFIVDVLENGEFCYVSINPTHERM 708 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G ++ K L T ++ ++ R + E+ KE ++ + Sbjct: 709 SGLLSSELSGKTPQEALTPETAQAVSQRYHACVASGERMSYEECLQIQGKETWWIT-NLT 767 Query: 545 IKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKES 582 + S Y L +IS+ KQ + L + Sbjct: 768 PLRDSNSRIYRLIGTSFNISDRKQVEKTLQLQAAAMSAAT 807 Score = 113 bits (282), Expect = 2e-22, Method: Composition-based stats. Identities = 55/536 (10%), Positives = 142/536 (26%), Gaps = 54/536 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDV-------SDILHIDPNNHIGDLL 137 + +A G +++ + +G + + + +D + + + L Sbjct: 37 IFVSEADGKPDYVNQIGKQILGQGGVESVTADQFIETYRIYQAGTDEFYPRNRHPLLQAL 96 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR--- 194 + + + + T +P++ PIY + + P Sbjct: 97 QGKRVRVDDMEIRHRDRT---IPVEAWGAPIYDCQGTLTHAIAAFV--DISERQPPEQVL 151 Query: 195 ---------------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMK 237 + + L + + P P Sbjct: 152 ADYNQKLEQQVAEQTEELRHSQARNQALLAAIPDMIFCSQADGTFIDFKPAPTIPSFAQA 211 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 D+ + + + SL E Q + + Sbjct: 212 QDFLGKKPEDVFPLDIA----QKIRAAYQESLVSGEVQQLDYQLQIKNQWRDYEARIVPC 267 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 + E LS S + +D+ G + Y N + + Sbjct: 268 SNQEILSIIRDISDRKQAEAQIAFQASLLDQVSNAVIATDLAGTIIYTNQFAQRIYQLNP 327 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + S L D + ++ + T+Q ++ + Sbjct: 328 ETILGQ----SILDVTVLPQDKALAQEILAGVQENGYWEGE---FTVQRQDGSTFPVYAT 380 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIIL 475 + + G+ + + + ++ + I A+ + I + E + Sbjct: 381 NTLIRDHQGNPIGYVGVSIDSSAQKQAEEQLRQSKHFIEQIAAASPYCLYIYDLIENRNI 440 Query: 476 STNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 +N+ ++ + GY E I + L + ++ + L ++ + + LE Sbjct: 441 YSNQEITTILGYTPEQIQAMGETFISSLLHPDDVTIASEQLQKLATAADGEILEIEYRMQ 500 Query: 533 TKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K +L T+ DIS+ KQ + +L +++++ + Sbjct: 501 DSHGKWHTLFGRETVFARTSDGTVKQVIGTVIDISDRKQAEIELRNSEQLYRTMAK 556 Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 41/386 (10%), Positives = 100/386 (25%), Gaps = 33/386 (8%) Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E + + + E Y + P +V H+D + E + Sbjct: 67 ADQFIETYRIYQAGTDEFYP--RNRHPLLQALQGKRVRVDDMEIRHRDRTIPVEAWGAPI 124 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + +++++ + N E + + + Sbjct: 125 YDCQGTLTHAIAAFVDISERQPPEQVLADYNQKLE-------QQVAEQTEELRHSQARNQ 177 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + P F F + + D + A Sbjct: 178 ALLAAIPDMIFCSQADGTFIDFKPAPTIPSFAQAQDFLGKKP-EDVFPLDIAQKIRAAYQ 236 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L + + ++ QW + + N I + D + Sbjct: 237 ESLVSGEVQQLDYQLQIKN-QWRDYEARIVPCS----------NQEILSIIRDISDRKQA 285 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502 + ++ + S+L+ S+ + + G I+ TN+ +++ E IL + + Sbjct: 286 EAQIAFQ----ASLLDQVSNAVIATDLAGTIIYTNQFAQRIYQLNPETILGQSILDVTVL 341 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558 ++ L + E ++ + + Y Sbjct: 342 PQDKALAQEILAGVQENG---YWEGEFTVQRQDGSTFPVYATNTLIRDHQGNPIGYVGVS 398 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSH 584 D S KQ + +L +K E+ ++ Sbjct: 399 IDSSAQKQAEEQLRQSKHFIEQIAAA 424 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 89/318 (27%), Gaps = 42/318 (13%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 ++R+ L A E E+ + +D P+ FV G Y N + V+ + Sbjct: 8 ANRDQAVLIAQLQESEHRLKQILDAVPVGIFVSEADGKPDYVNQIGKQILGQGGVESVTA 67 Query: 363 AGGLS-----------------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ- 404 + L + + + D I A I Sbjct: 68 DQFIETYRIYQAGTDEFYPRNRHPLLQALQGKRVRVDDMEIRHRD-RTIPVEAWGAPIYD 126 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + A+ Q PE + + + + ++ + ++L A D Sbjct: 127 CQGTLTHAIAAFVDISERQPPEQVLADYNQKLEQQVAEQTEELRHSQARNQALLAAIPDM 186 Query: 465 IAIINREGIILSTNRA--------VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I +G + A G ED+ + + L Sbjct: 187 IFCSQADGTFIDFKPAPTIPSFAQAQDFLGKKPEDVFPLDIAQKI----RAAYQESLVSG 242 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 L L+ E +++ + + DIS+ KQ + +++ Sbjct: 243 EVQQLDYQLQIKNQWRDYEARIVPCS--------NQEILSIIRDISDRKQAEAQIAFQAS 294 Query: 577 IAEKESSHK--SDFLARV 592 + ++ S+ +D + Sbjct: 295 LLDQVSNAVIATDLAGTI 312 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 14/170 (8%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G + D + +++ +L IL+A GI + +G N+ ++ G Sbjct: 3 QGFNHANRDQAVLIAQLQESEHRLKQILDAVPVGIFVSEADGKPDYVNQIGKQILGQGGV 62 Query: 491 D-------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + I H L + L + + + + + Sbjct: 63 ESVTADQFIETYRIYQAGTDEFYPRNRHPLLQALQGKRVRVDDMEIRHRD---RTIPVEA 119 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DISE + + L+ + E++ + +++ L Sbjct: 120 WGAPIYDCQGTLTHAIAAFVDISERQPPEQVLADYNQKLEQQVAEQTEEL 169 >gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM 1251] Length = 1452 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 123/787 (15%), Positives = 259/787 (32%), Gaps = 95/787 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--------------ILHIDPNN 131 + ID +G I+++ +G +++ D+ +++ + Sbjct: 343 VYGIDNNGNCTWINKKALNMLGYSEKEILHKNQHDIFHSHKPSREKYNADECPINLTSKD 402 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + L +G+ L + + + ++ + Sbjct: 403 KVTRTLNEH--------FIKKDGSLLPIILTVTSI---DEGGAIV------VFRDISNSI 445 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEK--------YDIFSQQSPPPHLRMKNKVSSL 243 KR +++ + D + + S Sbjct: 446 AKEQALKRSERELRLEKQRLDAIIQGTNVGTGEWNIQTGDTIFNERWAEIIGYTLDEISP 505 Query: 244 TE-------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NN 295 T + K L + + N + + + Sbjct: 506 TSIDTWEKFSHPDDFIATKKLLEEHLDGKTEYFESEMRMKHKNGHWVWVVDRAKVFEWDK 565 Query: 296 SKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350 + + E N ++ P ++ +G N F Sbjct: 566 DGKPVLMSGTHQDITERKLAQEKIEHINNQLESLLESIPDLIWMKDVNGVYITCNKRFED 625 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + G + +L+D S+ + + Sbjct: 626 FFGASLDEI---KGKTDYDFVSKELADFFREHDKKAMHSNVPLTNFEEITFAV---DSHK 679 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + E + GI + + + +++K+ L + + G ++ Sbjct: 680 EFLQTTKTAVRGRNGEILGILGIGRDLSELKRSEQKLRDSKELLDLFFKQSMHGFFFMML 739 Query: 469 NR-------------------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + + N A+ + + E+ L T F + N Sbjct: 740 DEPIEWNDSIDKEKTLDYVFEHQRVTKINEAMLEQYKAKEEEFLGFTPTDFFKHNIEEG- 798 Query: 510 NHYLTEILSLDLRQTLEKITLGS----TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 E+ S + + + L K+ + +I++ Sbjct: 799 RDIWRELFSRGIYHVNTNEQKFDGTPMVIDGDYICLYNSEGKIT---GHFGVQREITQDI 855 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++K L AK+ AE+ ++ KS+FLA +SHEIRTP+ AIIGFSE++ + + + Sbjct: 856 RDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLESDL----DEKQLH 911 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I+ S ++L I+ND+LD SKIE+ ++ + +L+ +S+ L + A +K + Sbjct: 912 QLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQTALDKGLE 971 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRV 741 + +P ++AD + Q+ +N+L NAI FT G + IS + ++ V Sbjct: 972 FYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEKSATLLFSV 1031 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D+G+G++ ++EK KPF Q +S R G+GLGL ++ +V A G+ + S G Sbjct: 1032 IDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEIDVKSKEGVG 1091 Query: 802 TLIEIIF 808 + Sbjct: 1092 STFSFEI 1098 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + S+L +G+ I+ G N+ + GY ++IL K Sbjct: 322 HLRERRRKNFISSLLSNIGEGVYGIDNNGNCTWINKKALNMLGYSEKEILHKNQHDIFHS 381 Query: 504 NTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + PS + + +TL + + K+ LL + + + + + Sbjct: 382 HKPSREKYNADECPINLTSKDKVTRTLNEHFI--KKDGSLLPIILTVTSI-DEGGAIVVF 438 Query: 559 HDIS-------EWKQEKNKLSHAKKIAEK 580 DIS K+ + +L K+ + Sbjct: 439 RDISNSIAKEQALKRSERELRLEKQRLDA 467 >gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1233 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 123/765 (16%), Positives = 263/765 (34%), Gaps = 46/765 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQN 141 + D G L ++ K +G ++IG+ + + + L ++ Sbjct: 81 VYATDLEGCLTFMNAAAEKKLGWSEQELIGLPVQEHVQCLLPDGSAQQPEDCPHLKSIRD 140 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR---GFGIVHVNRVDNDPRA--- 195 + +P++ + PI +N + SG +H+ + A Sbjct: 141 GVSLQANAIFSGRNGELIPVEFRSSPIL-QNGKVSGALVSFQDTSLHIEAANKLRLANDK 199 Query: 196 ---LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD- 251 + L+ + L E + ++ +++ ++++ + Sbjct: 200 LSSALRELEFQQLALDEHAIVSIADKRGCIVYVNRKFSEISQYTTDQLTGQDHRILNSGY 259 Query: 252 -DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + Y + + Y+S R + Sbjct: 260 HSRAFFTDMWRTIEGGQVWHGEVRNRRRDGTFYWVESTIVPFMDEEGRPERYISVRTDIT 319 Query: 311 LSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 +E + +V G Y N + + +++ Sbjct: 320 ARKMLEEQLSEQRAFYERISETMGEGLYVQDSEGRCTYMNSEAEHMLGWTR-EELLGRPV 378 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT-IQWNRENSLAMTFIPFEKANQF 424 T+ D + + + R ++ + + Sbjct: 379 HDTIHCVTAEGDVLPAEQCPILLAVRKNGDWQGDDQVFVRKDGTTFPVEGTSRAIIRDGV 438 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + ++R + + +L LE + + + + + S + Sbjct: 439 SY--GSVVAFSDISERKNSERIVRLAQERLNLALEGSGLALWDWDVAHDQVYLSDRWSLI 496 Query: 485 FGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 G +++++ + + + + L +L + ++ + + Sbjct: 497 LGDELQEVVITSTQLFSLVHADERAKIESDLVAVLK-GQNEFYSVEFRVQRRDGVWIWIH 555 Query: 543 III-KKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 S+ M DI+ ++ + L AK+ AE S K DFLA +SHEIR Sbjct: 556 THGKVVDRDSNGRVTRMTGTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIR 615 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ IIG +E+ + N EY + S + +L I+ND+LD SKIESGK+++ Sbjct: 616 TPMNGIIGMTELALDTEL----NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDI 671 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 SL+ + E + + + A++K++ + A ++P +L D ++Q+ +N++ NAI Sbjct: 672 ENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAI 731 Query: 717 HFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT SG +I + + VRDTG+G+ + + + F Q S R Sbjct: 732 KFTASG-EIEVDVQCLKGAPEGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRY 790 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814 GTGLGL ++ +V G + S +G+ P+ S Sbjct: 791 GGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTLDMPMLSVS 835 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 13/214 (6%) Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + L R A A L + L + + + ++ + + Sbjct: 2 HRLLERQLRRQLGKDFQADAALT-------SFLDIVDSYYHEVDKEQRLLQNSLSMNTAE 54 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497 +N+R ++L SDG+ + EG + N A K G+ ++++ P Sbjct: 55 LNAVNERMRIQNTEMTRTLLNTLSDGVYATDLEGCLTFMNAAAEKKLGWSEQELIGLPVQ 114 Query: 498 --TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 L + + + S+ +L+ + S + +L+ + + + Sbjct: 115 EHVQCLLPDGSAQQPEDCPHLKSIRDGVSLQANAIFSGRNGELIPVEFRSSPILQNGKVS 174 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 ++ D S + NKL A Sbjct: 175 GALVSFQDTSLHIEAANKLRLANDKLSSALRELE 208 >gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus marinus DSM 4252] Length = 691 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 119/627 (18%), Positives = 234/627 (37%), Gaps = 23/627 (3%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + F H E K + + + + Sbjct: 67 RQRAEVLATYQAFFEHALEGIFQADRKGKLLAVNPALARMLGYEQPEQLQGLHLATDVLA 126 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + L + + N + + + + Sbjct: 127 EATEFEHLLLQLEAHGAVRNHYLQLRRRNGEVFWARMNIW--KREELFEGTVEDVSSLQE 184 Query: 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 A E ++ P+ + G + ANP+ + Y+SV+ + A S L Sbjct: 185 AEAALRASEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEALLRANARS-L 243 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P + + R A+A L + + + + Sbjct: 244 YVDPAQREA-------FLKQLREKGEATAELALRRPDGTIIWVQNYARCIVE--QDGQVY 294 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 +G+ + + + ++ ++ + +LE + + + + E IL N A + G Sbjct: 295 FDGVLIDITERKQARQALQETEERYRQLLEQLPEPVVVHDGE-TILYANAAAAAFAGLSS 353 Query: 490 -EDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E+++ K FL + YL + +E+ + + + + + + + Sbjct: 354 SEELIGKSIYQFLRTEKADAIRRYLEMAVQQGRQLPPMEQQMVRADGAVRDVEIVSALVQ 413 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + + DI+E KQ + L AK+ AE+ + KS L+ +SHEIRTPL +IGF+ Sbjct: 414 YQGRPAFQVVLRDITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAGVIGFA 473 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 EV++ + + + E A I SG +L+ +N LLD+++IE+G L EP + Sbjct: 474 EVLEEEL-----DEPHRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPFDAADE 528 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V +++ + Q ++K + + + + D +I +N++SNA+ FT G I + Sbjct: 529 VRQSVRIFQRMIDDKGLRLELDLPDAPLPVYLDRNGFHRIVVNLVSNAVKFTDEG-MIRV 587 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + L+V+DTGVG+ + + F Q N G+GLGL + +V+ Sbjct: 588 GLAAE-GDWLRLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRLVEM 646 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G+ + S KGT + PL T+ Sbjct: 647 MGGRIEVQSEKGKGTTFTVWLPLRLTN 673 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 35/383 (9%), Positives = 90/383 (23%), Gaps = 21/383 (5%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 + + D G L ++ L + +G + + + H+ L+ Sbjct: 81 EHALEGIFQADRKGKLLAVNPALARMLGYEQPEQLQGLHLATDVLAEATEFEHLLLQLEA 140 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + I+ R F G V + A + Sbjct: 141 HGAVRNHYLQLRRRN-GEVFWARMN---IWKREELFEG-----TVEDVSSLQEAEAALRA 191 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + ++ L E I + + V +L A V ++ Sbjct: 192 SEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEALLRANARSLYVDPAQRE 251 Query: 260 PLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAY 314 L + + + Y + + + Sbjct: 252 AFLKQLREKGEATAELALRRPDGTIIWVQNYARCIVEQDGQVYFDGVLIDITERKQARQA 311 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E E + +++ P P V+ + YAN + S +++ L Sbjct: 312 LQETEERYRQLLEQLPEPVVVHDGETILYANAAAAAFAGLSSSEELIGKSIYQFLRTEK- 370 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + ++ + + P + Sbjct: 371 --ADAIRRYLEMAVQQGRQLP-PMEQQMVRADGAVRDVEIVSALVQYQGRP---AFQVVL 424 Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457 + + + +R + + I Sbjct: 425 RDITERKQYERHLLEAKERAEEI 447 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 34/393 (8%), Positives = 114/393 (29%), Gaps = 23/393 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKM 113 T ++ S+ + + + + + G ++ + + +G + + Sbjct: 175 TVEDVSSLQEAEAALRASEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEA 234 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + + L ++ P +GT ++V + Sbjct: 235 LLRANARSLYVDPAQREAFLKQLREKGEATAELALRRP-DGTIIWVQNYARCIVEQDGQV 293 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF--SQQSPP 231 F G ++ R + ++++ L E V + ++ + + Sbjct: 294 YFDG-----VLIDITERKQARQALQETEERYRQLLEQLPEPVVVHDGETILYANAAAAAF 348 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFG 290 L ++ + Y + + + L + + + + + + Sbjct: 349 AGLSSSEELIGKSIYQFLRTEKADAIRRYLEMAVQQGRQLPPMEQQMVRADGAVRDVEIV 408 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + + + ++ E ++ + + +N S + Sbjct: 409 SALVQYQGRPAFQVVLRDITERKQYERHLLEAKERAEE------IARLKSTLLSNISHEI 462 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 T + G + +L +L + + ++ S R + L + + Sbjct: 463 RTP------LAGVIGFAEVL-EEELDEPHRELAALIRDSGRRLLETLNTLLDLARIEAGA 515 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +T PF+ A++ +++ +D R+ Sbjct: 516 FVLTPEPFDAADEVRQSVRIFQRMIDDKGLRLE 548 >gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1450 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 129/671 (19%), Positives = 235/671 (35%), Gaps = 46/671 (6%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 R R R + + + + + I + Sbjct: 267 RRAVTVRTAEYARAERALREREWQLRSVGDNLPNGVVFQYEVMDGCPRFRYISAGVERTL 326 Query: 233 HLRMKNKVSSLTEYYAHKDDVL---KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 R + +A + T+ S F + Q + Sbjct: 327 GYRPEQMTHDAGPLFALMSPAVLKEYTKAEAKSAETLSDFSGLLPFDLPDGRQRWLLVHS 386 Query: 290 GTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346 + L + A E E ++ + G AN Sbjct: 387 RPRRTAEGAVIWDGVALDVTDQREAEARLIESEQRFRRLFEQSKQAITLIEDGCFVDANQ 446 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + L + + +S + + +A K L R ++ ++ + Sbjct: 447 AALDMLRLESREQFLGLKPSDISPEYQPDGRLSAEKAQELLHVARESGSSRFEWEHVRAD 506 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA------ 460 E+ A F E + + + + + + ++ +L S++E Sbjct: 507 GEHFFA---DVLLTPMVFGECQQIHVVWQDITEKKHAEAELARYQRELESLVEQRTSELR 563 Query: 461 ---------------TSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 GI+ ++ G L N + + GY E++L + + Sbjct: 564 HSNERLAHTQFAMDRVGIGISWNSVDT-GHFLYVNDELCRQLGYTYEELLSLTVSDVNHE 622 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDI 561 P+ + E+ + L T K+ + I + P + DI Sbjct: 623 YPPAAVRQVADELR--GSSRCLRLETRHWRKDGSTYPVSTTIYLHQAPGEEWFIAFFEDI 680 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + K + +L AK+ AE+ + KS+FLA +SHEIRTP+ AIIG + + + Sbjct: 681 TARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTPL----DA 736 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R +Y + RS +L I+ND+LD SKIE+G++++ L++ + +LV L A + Sbjct: 737 RQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLKAED 796 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVI 738 K + + +P ++ D + QI N+ +NA+ FT GG+I+I + V Sbjct: 797 KGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAEGADWVC 856 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 VRDTG+GMT + + + F Q S R GTGLGL + K + + G+ + S Sbjct: 857 LGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEIGVES 916 Query: 797 TPAKGTLIEII 807 P GT Sbjct: 917 EPGAGTCFRFS 927 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 49/469 (10%), Positives = 113/469 (24%), Gaps = 80/469 (17%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ----NTWYGKTTL 149 + IS + +T+G +M D + + + + K + T + L Sbjct: 314 RFRYISAGVERTLGYRPEQMT----HDAGPLFALMSPAVLKEYTKAEAKSAETLSDFSGL 369 Query: 150 WPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 P + + + + + P + G+ + A +++F L Sbjct: 370 LPFDLPDGRQRWLLVHSRPRRTAEGAVI---WDGVALDVTDQREAEARLIESEQRFRRLF 426 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTE-KYPL 261 E K ++ ++ + + Q+ LR++++ S D L E L Sbjct: 427 EQSKQAITLIEDGCFVDANQAALDMLRLESREQFLGLKPSDISPEYQPDGRLSAEKAQEL 486 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGT-----------------------LQNNSKE 298 L S + ++ + + + Sbjct: 487 LHVARESGSSRFEWEHVRADGEHFFADVLLTPMVFGECQQIHVVWQDITEKKHAEAELAR 546 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV----YSHGNLFYANPSFLLLTKY 354 L S E L + + G+ Y N Y Sbjct: 547 YQRELESLVEQRTSELRHSNERLAHTQFAMDRVGIGISWNSVDTGHFLYVNDELCRQLGY 606 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + L+ + + R + + + T Sbjct: 607 TYEELL----SLTVSDVNHEYPPAAVRQVADELR--GSSRCLRLETRHWRKDGSTYPVST 660 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATS----- 462 I Q P + ++ + ++ Q + L S Sbjct: 661 TIYLH---QAPGEEWFIAFFEDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRT 717 Query: 463 --DGIAI---------INREGI--ILSTNRAVSKLFGYPVEDILRKPFT 498 + I ++ I +R+ L G + + Sbjct: 718 PMNAIIGMAHLALQTPLDARQRDYIEKVHRSAEALLGILNDILDFSKIE 766 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 52/525 (9%), Positives = 142/525 (27%), Gaps = 50/525 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYG 145 WN G+ +++EL + +G +++ + + DV+ + D L+ Sbjct: 585 WNSVDTGHFLYVNDELCRQLGYTYEELLSLTVSDVNHEYPPAAVRQVADELRGSSRCLRL 644 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204 +T W +G+ V + + G F A R ++ Sbjct: 645 ETRHWRKDGSTYPVSTTIYLH-------QAPGEEWFIAFFEDITARKLVEAELLRAKEQA 697 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + K + + + M + +D + K + Sbjct: 698 EEATQAKSNFLANMSHEIRTPMNA----IIGMAHLALQTPLDARQRDYIEKVHRSAEALL 753 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L + DF I + +Q L++ + + + P Sbjct: 754 GI--LNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLKAEDKGLELMFDLPPEVPT 811 Query: 325 TV--DKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + D + + + GN + + P +L + + G + ++ D Sbjct: 812 ALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAE-----GADWVCLGFEVRDTGI 866 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN---GIEPED 437 + A + T + L + + E ++ Sbjct: 867 GMTPEQCGRLFESFS-QADMSTTRRYGGTGLGLAICKYLTELMGGEIGVESEPGAGTCFR 925 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 R+ +++ E L E + +++ N + + + ++ + Sbjct: 926 FSVRLGRQRAAPEGA-LHVARELLPLRVLVVDD-------NASARAILTHMLQQLG---- 973 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-------KLLSLRIIIKKLPF 550 S + + +++ + + + L + L + ++P Sbjct: 974 ---FGAEAVSSGAEAIARLRAVETQAPFDLMLLDWKMPGLDGVQTIRALRAEAAVSQVPA 1030 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + ++ S+ + + + HE Sbjct: 1031 LIMITAYGREGVRQASADLGVAGFLTKPVAPSALLNTLMHAIGHE 1075 >gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 881 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 125/730 (17%), Positives = 245/730 (33%), Gaps = 106/730 (14%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLWP 151 L E++ + + G V +D + + + G+ + Sbjct: 93 LNELNPQYANIL---VTDRTGKTWAAVFMPPPPAMLDDRRYFKNAIASGRLSSGE---YV 146 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + + P+ A P + G L + Sbjct: 147 VSKSMTNKPVFHFAYPYRDAAGKIGGVIVVAF-----------RLDTYSTVLRNSPLPAG 195 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 ++ + P + K S E A D+ Sbjct: 196 TNFLLLDHAGVIMHRALEPEKIIGKKYPEVSFKEMLAGPDEYSYRGPASF---------- 245 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ LQ + + A D+ + Sbjct: 246 --------GDERFISYRKIRLQGEADPYMYVRVGVPVKTTLAAADQTMLKSIAFFGTFLC 297 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 F+ ++ I ++ + S A + + Sbjct: 298 GAFLLAY--------------------LIGKRSIADRIILLEQASQRLASGEMQTQVAS- 336 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEI 449 + + + + ++ +R+ + Sbjct: 337 ------------------------------AVSGGEIGRLAESFDTMARQLTEREQVIRE 366 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSV 508 ++L SI ++ D I +++ +G I N A + GY E+ L K + L Sbjct: 367 SEVRLRSITDSAQDAILMMDDQGAITFWNPAAETILGYKAEEALGKDLHLLLAPLRYQQA 426 Query: 509 MNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEW 564 + + + K K+ + + + + + + + + + DI+E Sbjct: 427 FQKAFSVFVQTGRGHAVGKTVELAAKRKDGQEIVVSLSLSAVFLNGRWYAVGLLRDITES 486 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + +L A+ AE + KS+FLA +SHEIRTP+ ++G +++++ + Sbjct: 487 KHYQEELLEARHSAEAANRAKSEFLANMSHEIRTPMNGVVGMAQLLRYTQ----PTREQE 542 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + ++ S +L+++ND+LD+S+IESGK+ L SL + E +S +K + Sbjct: 543 EYLDNLELSCKNLLELINDILDLSRIESGKLELEAAVFSLRSCIQEVVSNQASRIEQKGL 602 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVIL 739 + TS +P ++ D KQI LN+L NAI FT +G I +S + + L Sbjct: 603 QLLTSLDEQVPEQVVGDSLRFKQILLNLLGNAIKFTEAGS-ITVSGQISSRQETGCTFRL 661 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+GMT L++ F Q +S G+GLGL + + + + G+ + ST Sbjct: 662 MVSDTGIGMTEETLQRIFNSFEQADSSTTRVYGGSGLGLAICRRLTELMGGRIWAESTFG 721 Query: 800 KGTLIEIIFP 809 KG+ + P Sbjct: 722 KGSAFFVELP 731 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 16/145 (11%), Positives = 38/145 (26%), Gaps = 16/145 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQNTW 143 +D G + + +G A + +G L + + + Sbjct: 385 MDDQGAITFWNPAAETILGYKAEEALGKDLHLLLAP--LRYQQAFQKAFSVFVQTGRGHA 442 Query: 144 YGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 GKT +G + V + L+A+ + R + G++ + Sbjct: 443 VGKTVELAAKRKDGQEIVVSLSLSAVFLNGR------WYAVGLLRDITESKHYQEELLEA 496 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 497 RHSAEAANRAKSEFLANMSHEIRTP 521 >gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1133 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 115/635 (18%), Positives = 232/635 (36%), Gaps = 37/635 (5%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + P + ++ V Sbjct: 243 QGPDDEMQRAVFAPVAAPGGQRLFIRLSQPQAIHEALLIGAWQSDMLLFGLAVALALAAA 302 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + L F + + + SK L + Sbjct: 303 WWFNRVFLLRPMGQFVAMATDMAAGNLDRRSGLAESKGEMGELGRALDAMADKLKERI-R 361 Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 T E +D P+P F N ++ L+ + Sbjct: 362 FTQELIDAIPVPVFYKDLESRYLGCNAAYER-----------AIRPLARIRRRTVHDLEL 410 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + ++DR ++ A + + + + + G+ Sbjct: 411 PAQAALCAKTDRAVLSGEAETVEYETSLLFRDQTVHDVVVFKSRFHDVAGRTAGVIGVLL 470 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + ++ ++ + +L++ DG +++ + ++ +N A ++ GY +++ + Sbjct: 471 DITGRKCSEAELLASRTRYKLLLDSMGDGFVVLSSDYRLVESNPAFQEMTGYGPDELEKM 530 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551 + + L E+ + + EK K+ +L + + + P Sbjct: 531 TYRDITPEAWHKPEERLLAEVDAKGSAEVFEKE--YRRKDGSILPVAVRPHRHPESPGED 588 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 Y + DI++ K + L AK+ AE + KSDFLA++SHEIRTPL A+IG +E+ Sbjct: 589 RRYFAVVRDIADVKAIEADLRQAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTEL-- 646 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 G +P+ + + +L I+ND+LD+S+IE+ + L + L ++ Sbjct: 647 --TLGTELSPQQRDALETAREAAGNLLGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGV 704 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 ++ A K + + + A N PR + D V+QI LN++ NA+ FT GG + ++ Sbjct: 705 ARTLRPQAARKGLFLTLAVAPNTPRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAA 764 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ L V DTG+G+ LE+ F Q + + GTGLGL + + +V + Sbjct: 765 PDGDPGQLELAVADTGIGIAPDRLERIFDMFTQADRTVALNFGGTGLGLAICRELVRSMG 824 Query: 790 GKFYIFSTPAKGTLIEIIF--------PLYDTSHP 816 G+ + S P +GT+ + P+ P Sbjct: 825 GEIAVDSVPGQGTVFRVKLRLTPAQVVPIEPARRP 859 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 44/448 (9%), Positives = 112/448 (25%), Gaps = 26/448 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152 L E + + G ++ M D++ P + ++ + + + Sbjct: 508 RLVESNPAFQEMTGYGPDELEKMTYRDITPEAWHKPEERLLAEVDAKGSAEVFEKEYRRK 567 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G+ L V + P R F +V A ++ + + K Sbjct: 568 DGSILPVAV----RPHRHPESPGEDRRYFAVVRDIADVKAIEADLRQAKEAAETANRAKS 623 Query: 213 GHSSVEKEKYDIF------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + +L ++L L S Sbjct: 624 DFLAKMSHEIRTPLHAVIGMTELTLGTELSPQQRDALETAREAAGNLLGIINDVLDLSRI 683 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + +L + T TL+ + +L+ P+ + + + + Sbjct: 684 EAKGLELVIQDFDL-RRTLAGVARTLRPQAARKGLFLTLAVAPNTPRHVRGDQGRVRQIL 742 Query: 327 DKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPV 384 G + + + + G L+ A + V Sbjct: 743 LNLVGNAVKFTREGGVTVTVAAPDGDPGQLELAVADTGIGIAPDRLERIFDMFTQADRTV 802 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L A + + +A+ +P + + R Sbjct: 803 ALNF--GGTGLGLAICRELVRSMGGEIAVDSVPGQGTVFRVKLRLTPAQVVPIEPARRPV 860 Query: 445 RKMEIEVMQLCSILE-----ATSDGIAIINREGI--ILSTNRA-VSKLFGYPVEDILRKP 496 + + L ++ +NR G ++ N A + G+ D++ Sbjct: 861 AAPQADARPLRVLVAEDNPINVKVATTFLNRRGHQATVAANGARALECLGHETFDLVLMD 920 Query: 497 FTV--FLEQNTPSVMNHYLTEILSLDLR 522 + + L + + Sbjct: 921 VEMPELDGMEATRRLRAGLAGEANRRVP 948 >gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1051 Score = 378 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 129/794 (16%), Positives = 257/794 (32%), Gaps = 54/794 (6%) Query: 44 PCHDSFEQSNFTDQNQESVSNTNYLDS---ENTFVFDPIPRTVRF-TWNIDAHGYLKEI- 98 P D + V+ T ++ E+ F + D + Sbjct: 132 PIRDEQGAVSGAVAIARDVTKTRKAEAALRESDESFQVALTHTPVMVFAADMDQRFSWVF 191 Query: 99 SEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 + G A ++IG L ++ + + +L++ + + G Sbjct: 192 NPPF----GLTAEEIIGKTLQELIKPEDASEVQALVSELIESGRA-IRQEVVIRFRGRET 246 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 + + P SG G+ + ++ D+KF + + ++ Sbjct: 247 CWDVTI--EPRRDVRGVISGL--IGVAYDLTERRWAEKAREQSDEKFRRIFHLSPAILAI 302 Query: 218 ----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + D+ S + + + E SL + Sbjct: 303 STLQDGVYLDVNEAFSKLLGYSREEVTGKNAFELQLWAEPAQRNLLAAQLKERGSLRSRL 362 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT---PETVDKCP 330 + + L + + + D V+ Sbjct: 363 VRYRCKSGEIKTLVISAELMEVEGQQCVLAAASDFTMQQRRHDAIRKREMEWRAIVENTS 422 Query: 331 IPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + Y N + +T + + A + A+K V Sbjct: 423 DIIARIDHESRYTYINQAVTKVTGLLPREIVGEAFHTRGFSGENLVKAKRALKTVFDSGK 482 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 L + + + + ++ E I + + + ++++ Sbjct: 483 PGL-------LELAASGQGRPVTLQVCLVPEFSRTGEVETVLAISRDISELKQTEQELRS 535 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + E+ G ++ G L N+A + GY ED++ + F + + + Sbjct: 536 SREHYRLLYESVPLGYQSLDARGCYLEVNQAWLEAMGYSREDVIGQRFGR-FVTESAAYL 594 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565 E + K+ K MHD++ + Sbjct: 595 AESFAAFKQCGEISGAEFEMV--RKDGSRFIAAFYGKISTDEQGRFRQTHCIMHDVTARR 652 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + ++ A+ AE S KS FLA +SHE+RTPL I+G E+ + + + Sbjct: 653 RAEEEIRRAQSAAEAASRAKSMFLAHMSHELRTPLNGILGMVEL----AHMACADEKQCK 708 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y +SG+ +LDI+ND+LD++KIE+GK L EP SL E + I + + K + Sbjct: 709 YLELAKQSGHTLLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLE 768 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------- 735 + IP + D ++Q+ N++ NA+ FT G + + + Sbjct: 769 VTWRMDPRIPDRLAGDQGRLRQVLANLVGNALKFTERGS-VSVDLGLSRGGFETRPYCPA 827 Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +I + DTG+G+ +L + F Q S ++ GTGLGL ++K +V+ G + Sbjct: 828 GMRLIFSIADTGIGIPQDKLPHLFESFTQALTSAHVKFGGTGLGLCISKRLVEMMQGTIW 887 Query: 794 IFSTPAKGTLIEII 807 S KG+ Sbjct: 888 AESVVGKGSTFSFT 901 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 47/285 (16%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYP 488 + + E + R++ E L S++E+ SD I + N+A Sbjct: 8 RQELLAEAALLKERLRELGRERDFLASLVESASDEIWFCAPDESFARPLNKAARDFLDLA 67 Query: 489 VEDILRKPFTVFLEQNTPSVMNHY--------LTEILSLDLRQTLEKITLGSTKEEKLLS 540 + L L+ + E + L + E + Sbjct: 68 RAGLPPLQRAEADSPLPIFKTQAALLSPAESPLRRALAGETVHGDEAVLLPESGEVRHRE 127 Query: 541 LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 R + S D+++ ++ + L + + + ++H Sbjct: 128 YRASPIRDEQGAVSGAVAIARDVTKTRKAEAALRESDESFQVA----------LTH---- 173 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 T ++ F+ + +QRF + NP + A I G + +++ K E Sbjct: 174 --TPVMVFAADM-DQRFSWVFNPPFGLTAEEII--GKTLQELI-------KPEDAS---- 217 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 + VSE I A + ++IR + + R Sbjct: 218 ----EVQALVSELIE--SGRAIRQEVVIRFRGRETCWDVTIEPRR 256 >gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 490 Score = 378 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 111/498 (22%), Positives = 202/498 (40%), Gaps = 16/498 (3%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 ++D P FV S G + N + + + + + ++ + Sbjct: 2 RESATLDASIDDLPDACFVLSSTGIVLQWNAGAEEVFGHSAAQALGH-DLIELVVPDDQA 60 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 A L TC A + + L + + +E Sbjct: 61 GPQRAWLATTLAGGPSTCEAVR------RRRDGSLLCVDVTSRMLPAPPGQPARILVVEK 114 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + ++ + ++ + +LE+T DGI ++N G I+ N +LFGYP + + Sbjct: 115 DVTLIKVQR-DAKLMEARFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLRGR 173 Query: 496 PFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 L + + ++ + G ++ + I + L Sbjct: 174 SVDQLLPERYRHAHVAHRSQYFLQPRKRAMGSGLDLAGLRRDGTEFPIEISLGPLRTEDG 233 Query: 554 YSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + DISE K+ + L + K+ FLA +SHE+RTPL AIIGF+ + Sbjct: 234 AFVMSAIRDISERKRFERALQEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFTGTLL 293 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + GPL + + + SG +L ++NDLLD++KIE+GK +H E + + + E Sbjct: 294 MRLPGPLTPDQERQ-LRTVQASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALLHEV 352 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +S + A K + + S + +D R + QI +N++ NAI FT +G I + Sbjct: 353 VSTLHPQAVAKGLALTLSVPEPALQCESDRRMLNQIVINLIGNAIKFTDAGS-IHVGLRA 411 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG+G+ + K F ++ +SQ EGTGLGL L++ + G Sbjct: 412 RAGGF-EIEVTDTGIGIGTDDQAKLFGAFSRVVSSQGRVAEGTGLGLHLSQKLAALLGGT 470 Query: 792 FYIFSTPAKGTLIEIIFP 809 + S +G+ + P Sbjct: 471 IDVRSEAGRGSCFSLRVP 488 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/275 (8%), Positives = 73/275 (26%), Gaps = 12/275 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144 ++ G++ + + + G + G + + + + +++ Sbjct: 146 VNPTGHIVIANSQAERLFGYPPGGLRGRSVDQLLPERYRHAHVAHRSQYFLQPRKRAMGS 205 Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G +GT PI+++ P+ + + F + + + + Sbjct: 206 GLDLAGLRRDGT--EFPIEISLGPLRTEDGAFV----MSAIRDISERKRFERALQEKNVE 259 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + +E K + + + ++ + L Sbjct: 260 LAAANEAKTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPLTPDQERQLRTVQASGRHLL 319 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + L + + + G L + + + +L+ E L Sbjct: 320 ALINDLLDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKGLALTLSVPE-PALQC 378 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 E+ + + GN + + ++ Sbjct: 379 ESDRRMLNQIVINLIGNAIKFTDAGSIHVGLRARA 413 >gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1331 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 118/793 (14%), Positives = 258/793 (32%), Gaps = 74/793 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 WN D G+ +S ++ +G +++ + V +D + ++ + Sbjct: 413 LVWNADEQGHNTYVSPQMSAYLGLPPEQLLNLDWETVIHPEDVDRVHRTWMKAVQTGTPY 472 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L ++G + + ++ + FG+ + + K Sbjct: 473 EVEYRLRRVDGEYRWHLV----RAVF--EGNEQDRKWFGVSTDIHDRKRAEIALRESEAK 526 Query: 204 FSHLHE-------------------IKKGHSSVEKEKYDIFSQQSPPPHLR--------- 235 + L + + V + Q+ L Sbjct: 527 YRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFERQTGLQNTAGKLGSEVVPNTES 586 Query: 236 --------MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + L H+ Y S F I + ++ Sbjct: 587 HWLRGYSNVAQTGEPLRVENYHEYTGRWYSAYGSRVGGVGSRRVAIVFDDITERKRAEEA 646 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--TVDKCPIPFFVYSHGNLFY-- 343 + + + + R P A + + E +D+C I + + + Sbjct: 647 LRESKEQQAFLLKFSDALRAEPDADAVANRAIRMLSEQLRLDRCYIGVYRLADDRADFTH 706 Query: 344 --ANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 N L + D A L +++ + + A Sbjct: 707 QVGNDRVPPLPDGVRLSDFPEALRVAFDRTLVIDDVAETEGLTDTDRRNLGALGLRALVA 766 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLC 455 + AM + + E + + + + Sbjct: 767 ATLRKGENNPLWAMVAVSACPRRWTRSEVALAEDVTERTWAAMERARAEEALRASESRYR 826 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++EA + + +G + ++ + G ++ + + + + Sbjct: 827 YLVEAVPHLVWTTDAKGRVTFVSQRLCDYIGLQASQLMNLEWRMVIYPEDVERVYQCWMH 886 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 + L E + + DI + ++ + + Sbjct: 887 SVHTGLP--FEAEYRIHRADGTYRWQLSRAMPFRNEQGEVVQWFGLTLDIHDKQELERQR 944 Query: 572 SHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + AE+ + K +FL+ +SHE+R+PL I+G++++++ L Sbjct: 945 DQVLQQAQVAQEEAERANRIKDEFLSILSHELRSPLNPILGWAQLLQ---IKTLDQTTTK 1001 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ + L +V+DLLD+++I GK++L PV+L ++ A+ +V+ A+ K + Sbjct: 1002 QALATIEHNAKLQTQLVDDLLDVARILRGKLSLQEAPVNLVSVIAAALEVVKTAADVKSV 1061 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ +I ++ D ++QI N+LSNAI FTP+GG++ I + + + V DT Sbjct: 1062 TLQPEL-TDIGQVRGDEARLQQIVWNLLSNAIKFTPTGGRVTIRLEQVED-QAQITVTDT 1119 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803 G+G+ L + F Q S + G GLGL + K +V+A+ G S +G Sbjct: 1120 GIGIQPQFLPHIFESFRQQDTSISRQYGGLGLGLSIVKYLVEAHGGTITAESPGENQGAT 1179 Query: 804 IEIIFPLYDTSHP 816 + PL + P Sbjct: 1180 FTVQLPLLKAASP 1192 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 52/513 (10%), Positives = 129/513 (25%), Gaps = 38/513 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143 W+ + G ++ + G + IG D + + +++ Sbjct: 161 LLWDSEPDGSTNWYNQRWMEYTGQTFEQAIGWGWIDAIHPDDREGSARRYREAVEQGVPL 220 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G Y + A P+ + + +G + ++K Sbjct: 221 QQEHRIRRHDG--AYRWFGVKASPLKDGSGKVVKM--YGAATDIHEQWVALEALRESEEK 276 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 F L + + ++ + D + Sbjct: 277 FRTLANTAPALIWYNDAQGKNCFINQYFLDFTGKSAEQIRGEGWHDLVHPDDAEHYIVDY 336 Query: 262 LTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYF 315 L + E+ S + + Y L + + ++ Sbjct: 337 LVAVHEQRSWHNRNRIRRHDGVWRWHDNYAQPLFSTNGIYLGHVGVTIDNTEAIEAGIAL 396 Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E E V+ P + G+ Y +P + L Sbjct: 397 QESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMSAYLGLPPEQLLN----LDWETVIHP 452 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + M T RL + + E + ++ G+ Sbjct: 453 EDVDRVHRTWMKAVQTGTPYEVEYRLRRV--DGEYRWHLV---RAVFEGNEQDRKWFGVS 507 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NR-----EGIILSTNRAVSKLF 485 + D + + + + S+ ++ +G ++ + + +L N+ + Sbjct: 508 TDIHDRKRAEIALRESEAKYRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFERQT 567 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G + NT S + + +E + S Sbjct: 568 GLQN---TAGKLGSEVVPNTESHWLRGYSNVAQTGEPLRVEN---YHEYTGRWYSAYGSR 621 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 S ++ DI+E K+ + L +K+ Sbjct: 622 VGGVGSRRVAIVFDDITERKRAEEALRESKEQQ 654 Score = 118 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 38/411 (9%), Positives = 105/411 (25%), Gaps = 16/411 (3%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVS 241 + A + + + + + + + Sbjct: 133 HDAERPKTEAALRESEARLQAVTNLVPDLLWDSEPDGSTNWYNQRWMEYTGQTFEQAIGW 192 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + D +Y + L ++ + L++ S + + Sbjct: 193 GWIDAIHPDDREGSARRYREAVEQGVPLQQEHRIRRHDGAYRWFGVKASPLKDGSGKVVK 252 Query: 302 YLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356 E E + P + G + N FL T KS Sbjct: 253 MYGAATDIHEQWVALEALRESEEKFRTLANTAPALIWYNDAQGKNCFINQYFLDFTG-KS 311 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + I G L P +++ + ++ R+ + I+ + Sbjct: 312 AEQIRGEGWHD--LVHPDDAEHYIVDYLVAVHEQRSW----HNRNRIRRHDGVWRWHDNY 365 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + G+ ++ + ++ + ++E T + + +G Sbjct: 366 AQPLFSTNGIYLGHVGVTIDNTEAIEAGIALQESEQRYRHLVELTPHLVWNADEQGHNTY 425 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + +S G P E +L + + ++ + + +E E Sbjct: 426 VSPQMSAYLGLPPEQLLNLDWETVIHPEDVDRVHRTWMKAVQTGTPYEVEYRLRRVDGEY 485 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + +R + + + DI + K+ + L ++ + Sbjct: 486 RWHLVRAVFEGNEQDRKWFGVSTDIHDRKRAEIALRESEAKYRSLFDSIDE 536 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 65/584 (11%), Positives = 154/584 (26%), Gaps = 79/584 (13%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE F W DA G I++ G A ++ G D+ + Sbjct: 272 ESEEKFRTLANTAPA-LIWYNDAQGKNCFINQYFLDFTGKSAEQIRGEGWHDLVHPDDAE 330 Query: 129 PN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + Q +W+ + + +G ++ D A P++S N + G G I N Sbjct: 331 HYIVDYLVAVHEQRSWHNRNRIRRHDG--VWRWHDNYAQPLFSTNGIYLGHVGVTI--DN 386 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTE 245 + + ++++ HL E+ E+ S Q ++ +L Sbjct: 387 TEAIEAGIALQESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMSAYLGLPPEQLLNLDW 446 Query: 246 Y---YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESF 300 + D + + + + + ++ + F + + K Sbjct: 447 ETVIHPEDVDRVHRTWMKAVQTG-TPYEVEYRLRRVDGEYRWHLVRAVFEGNEQDRKWFG 505 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYS------HGNLFYANPSFLL 350 + E E D F +Y L N F Sbjct: 506 VSTDIHDRKRAEIALRESEAKYRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFER 565 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 T ++ G P + + ++ + +T +W Sbjct: 566 QTG------LQNTAGKLGSEVVPNTESHWLRGYSNVAQTGEPLRVENYHEYTGRW----- 614 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EAT-----S 462 + + + + + + + + + Q +L +A + Sbjct: 615 ----YSAYGSRVGGVGSRRVAIVFDDITERKRAEEALRESKEQQAFLLKFSDALRAEPDA 670 Query: 463 DGIA-----IINREGIILST-------------------NRA------VSKLFGYPV--E 490 D +A +++ + + N +L +P Sbjct: 671 DAVANRAIRMLSEQLRLDRCYIGVYRLADDRADFTHQVGNDRVPPLPDGVRLSDFPEALR 730 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + + T + + + +L LR + + + + Sbjct: 731 VAFDRTLVIDDVAETEGLTDTDRRNLGALGLRALVAATLRKGENNPLWAMVAVSACPRRW 790 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + D++E + + A++ S + V H Sbjct: 791 TRSEVALAEDVTERTWAAMERARAEEALRASESRYRYLVEAVPH 834 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 63/249 (25%), Gaps = 24/249 (9%) Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFI 416 + + + +L + D + + ++ C + +L + Sbjct: 46 ALCRSARVDAILLESRFPDPQGLDVLDQLKAQLGEQCPPIIVIDQNDANLAKRALKAGAV 105 Query: 417 PFEKANQFPENMPQNGIEPED--------VDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + +Q + + + + + +L ++ D + Sbjct: 106 DYLIRSQITSEILYQAVSMVISTDGKSHDAERPKTEAALRESEARLQAVTNLVPDLLWDS 165 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 +G N+ + G E + + + + E + + L++ Sbjct: 166 EPDGSTNWYNQRWMEYTGQTFEQAIGWGWIDAIHPDDREGSARRYREAVEQGVP--LQQE 223 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + L S + DI E A +ES Sbjct: 224 HRIRRHDGAYRWFGVKASPLKDGSGKVVKMYGAATDIHEQ--------WVALEALRESEE 275 Query: 585 KSDFLARVS 593 K LA + Sbjct: 276 KFRTLANTA 284 >gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1287 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 107/582 (18%), Positives = 217/582 (37%), Gaps = 32/582 (5%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSA 313 L + + +++ N + + E L N+ L Sbjct: 336 RANRRLTHTLQELELQRKTTDWALDNLNEQTVQLEQTNEELQTINEQLLTTNNERGLLLE 395 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E+ +D + + + + N + L + Y + + + Sbjct: 396 ALRSSEDQLRAILDSTAEAIYGTNLQGICTFCNAACLRMLGYDDPAQLIGKNMHHQIHHS 455 Query: 373 PKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + + + I + + + + + + Q + Sbjct: 456 HRDGSAFPEEECRISQSFKEGQGIHVDDEVFW--RRDGSCFPVEYWSYPQY-QDGRIVGT 512 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + + + L +E + + I + G I N ++ G+ E Sbjct: 513 VATFMDITERIKSHSSLLM----LSRAVENSPAIVVITDHAGSIEYVNSKFVEITGFAAE 568 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 D L + + + ++ K ++ I + Sbjct: 569 DALGHNPRILNAGVQSKEFYRQMWDTINAGQEWRG--EFCNRKKNGEMHWEHASISPIRD 626 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DI+E ++ ++L AK+ AE + KS+FLA +SHEIRTPL AIIGF Sbjct: 627 DHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTPLNAIIGF 686 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + + + + +Y + ++ + +L I+N++LD SKIE+GK+ + E Sbjct: 687 NTLALETQLTA----QQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHAVFNPRE 742 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725 + I+L Q A K + + ++N+P ++ D + Q+ +N++ NA+ FT G + Sbjct: 743 VLQNIINLFQQQAAHKGLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNAVKFTEQGA-V 801 Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + T + VRDTG+G+ +L K +PF Q S + GTGLGL ++ Sbjct: 802 SLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGLGLSIS 861 Query: 782 KAMVDANMGKFYIFSTPAKGTLIE----IIFPLYDTSHPHDC 819 K +V+ G + S P G++ FP ++ C Sbjct: 862 KRIVELTGGHIWAESEPGYGSVFSFNMPFSFPAAGSAAARQC 903 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 10/239 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G ++ ++ + + G A +G ++ + + D + W G+ Sbjct: 546 TDHAGSIEYVNSKFVEITGFAAEDALGHNPRILNAGVQSKEFYRQMWDTINAGQEWRGEF 605 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + PI + + F + +R ++ Sbjct: 606 CNRKKNGE--MHWEHASISPIRDDHGRITHF--VAVKEDITESRRIADELRRAKEEAEAG 661 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K + ++P + N ++ T+ A + D L + + Sbjct: 662 NRSKSEFLANMSH-----EIRTPLNAIIGFNTLALETQLTAQQHDYLSRVNFAATSLLRI 716 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + F + + H LS +NL E V Sbjct: 717 INEILDFSKIEAGKLEFEHAVFNPREVLQNIINLFQQQAAHKGLSLELHCSDNLPAELV 775 >gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 1239 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 123/614 (20%), Positives = 229/614 (37%), Gaps = 24/614 (3%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 ++ S +F QS + + + H + + Sbjct: 285 TIDMNGRILSFNHAAEQLFGWQSAEIVGQDTAILMPKAYHVRHNHFLKHFGEAGQAKILG 344 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + ++ E + + Sbjct: 345 VGREVTGVRKNGSTVPIRLAIGKAKISGETLIFGFITDLTQRNAMKKTMRERDEQLRSLM 404 Query: 327 DKCPIPFFV--YSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 P F Y+ + + S LT Y + + + GLS L I Sbjct: 405 SNIPGVTFRCQYNQDWRMLVISDSVKDLTGYAAEEFL--KNGLSCTLFTHTEDAARVIAE 462 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + ++ A R I+ + ++ + ++ +G+ + ++++ Sbjct: 463 IQTALANGEHYAIEYR---IKHRDGSEKWVSEMGCAIRDKSGAVQMLDGVILDVTESKLR 519 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + E +I ++TS +A + G IL N L GY +++ K + Sbjct: 520 HAEYESIA---RAINQSTS--VAEFSMNGTILDANATFLTLLGYEKNEVIGKHHS-IFCS 573 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559 + Y + +L+ + ++ K + + L + + M Sbjct: 574 AQDAASASYRNKWEALNRGEFVQGEFKRLGKNGSEVWIHASYSPLLNADGKPSKVLMFMI 633 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + +N L AK AE+ +S K+ FLA +SHEIRTP+ AIIGFSE++ + Sbjct: 634 DITERTRMENDLKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTEM---- 689 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N I+ S +L ++ND+LD +K+E GK+ L SL E V +S + + A Sbjct: 690 QDEQRRYMNTINNSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQA 749 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K + ++ N ++QI +N+L N+I FT G + + N E+ Sbjct: 750 KRKNLDLQLELDPNTASYYLGAPDRIRQILMNLLGNSIKFTEHG-YVKLVVKQLDNHELS 808 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + DTG+G+ L+ +PF Q +S + GTGLG ++K +V+ G+ S Sbjct: 809 FSIIDTGIGIPQDRLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEI 868 Query: 799 AKGTLIEIIFPLYD 812 G+ +I PL Sbjct: 869 GSGSCFTMILPLQP 882 Score = 97.8 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 11/156 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R R ++ +L +IL+ DGI I+ G ILS N A +LFG+ +I+ + + Sbjct: 259 RQMLRSLQNNQSRLSTILDTAVDGIITIDMNGRILSFNHAAEQLFGWQSAEIVGQDTAIL 318 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556 + + NH+L + L + G K + +R+ I K+ + Sbjct: 319 MPKAYHVRHNHFLKHFGEAGQAKILGVGREVTGVRKNGSTVPIRLAIGKAKISGETLIFG 378 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + D+++ + KK + ++ + Sbjct: 379 FITDLTQR-------NAMKKTMRERDEQLRSLMSNI 407 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 31/378 (8%), Positives = 99/378 (26%), Gaps = 25/378 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNT----W 143 ID +G + + + G + +++G + + +NH + Sbjct: 286 IDMNGRILSFNHAAEQLFGWQSAEIVGQDTAILMPKAYHVRHNHFLKHFGEAGQAKILGV 345 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T G+ + + + + I FG + N + + D++ Sbjct: 346 GREVTGVRKNGSTVPIRLAIGKAKISGET------LIFGFITDLTQRNAMKKTMRERDEQ 399 Query: 204 FSHL----HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLK 255 L + + + + S + S T + +D Sbjct: 400 LRSLMSNIPGVTFRCQYNQDWRMLVISDSVKDLTGYAAEEFLKNGLSCTLFTHTEDAARV 459 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + + + ++ + +++ S + S Sbjct: 460 IAEIQTALANGEHYAIEYRIKHRDGSEKWVSEMGCAIRDKSGAVQMLDGVILDVTESKLR 519 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 +++ +G + AN +FL L Y+ + I + + + Sbjct: 520 HAEYESIARAINQSTSVAEFSMNGTILDANATFLTLLGYEKNEVIGKHHSI---FCSAQD 576 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + + + + N + + N + Sbjct: 577 AASASYRNKWEALNRGEF--VQGEFKRLGKNGSE-VWIHASYSPLLNADGKPSKVLMFMI 633 Query: 436 EDVDTRINKRKMEIEVMQ 453 + + + +++ + Sbjct: 634 DITERTRMENDLKLAKDK 651 >gi|86751073|ref|YP_487569.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] gi|86574101|gb|ABD08658.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris HaA2] Length = 1158 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 118/696 (16%), Positives = 249/696 (35%), Gaps = 60/696 (8%) Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 PI+L LPI +R F + + L +I + ++ Sbjct: 208 PIEL--LPISGMDRGF--LVLLPVYRSGDPVTTEEQRRRALVGWTFTPVDIYAILAELDS 263 Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + F + V + + + T + + +++ Sbjct: 264 GAGE-FGFSVSDDGGAPFHTVGAPRDSSLSLPTRDISFGMYGRTWKIAFWALPPFIESLS 322 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338 L + L A + V+ S Sbjct: 323 LPNPWLPFAMTLAIGLLVTALVNLQMFYQAR-RAEQTIERSRLAAIVEGSNDAILAKSVD 381 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G + N + L Y S + + + L+ + + D Sbjct: 382 GIVIDWNKAAERLFGYSSHEAVGSK--VYDLIVPEDRREEELRMLERMRHGDPMTY---F 436 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--- 455 R I+ + + + + ++ + + + ++++ L Sbjct: 437 RTRRIRRDG-SLVDVAISLSPIRSEVGALIGIASAARDITELVAAEKQIRELNASLERQV 495 Query: 456 ---------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +ILE + + N +G I N A ++ GY E+++ + + Sbjct: 496 ADRTAMLEKSMTLQTAILERAAYAVIATNVDGTITLFNPAAERMLGYKAEELIGRATAML 555 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITL---------------GSTKEEKLLSLRIII 545 P + + + + + K + +R+ + Sbjct: 556 FH--DPQELLDRADAMRRQGIEVGSGQRVVQALLAHNDPDTSLWTYVGKTGNRIPVRLTL 613 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +L D++E + +++L A+ AE+ + K+DFLA +SHEIRTPL Sbjct: 614 CRLRTKDGTDLGVLGIAVDLTEQLKYEDELKAARASAEQAGAAKADFLANMSHEIRTPLN 673 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IIG++++ + P I + + + I++D+LD SKIE+ + L +P Sbjct: 674 GIIGYADLALEDQ---TLVPTTRRQVERIFEASDSLRVIIDDILDFSKIEACGLKLESKP 730 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + L E + +S++Q A EK + + + + ++ D ++Q+ LN+++NA+ FT + Sbjct: 731 LYLTELIDNCVSIIQPKAEEKGLKLLATARDTPAVLMGDAARLRQVLLNLMNNAVKFTSA 790 Query: 722 GG-QIIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G ++I+S ++ V LR+ DTG+G++ + + K F Q + + GTGLGL Sbjct: 791 GSVELIVSCVSRADPMVRLRIAVVDTGIGISKVDQQGLFKRFSQADETISRKYGGTGLGL 850 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812 +++ +V A + I S +G+ E+ P+ + Sbjct: 851 AISQRIVQAMQSELKIDSDQGRGSTFYFEVELPIAE 886 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 54/469 (11%), Positives = 122/469 (26%), Gaps = 44/469 (9%) Query: 129 PNNHIGDLLKRQNTWYGKTT----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 ++ I L +R T+ + + + G + + EF G RGFG V Sbjct: 70 ASDFIYRLKERVGTYRFELLAARGVIAVAGEAISFDTFHRYAETRNFISEFPGARGFGFV 129 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + K + E +Y + + + + Sbjct: 130 RPV--APQDVEAFVARMRANGLPTYGVKQLAPHEGVRYLVTYLEPHDLNGTALGIDLASE 187 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D +T+ LP + + + + + Sbjct: 188 AKRKTAADAAAASGQATMTAPIELLPISGMDRGFLV-LLPVYRSGDPVTTEEQRRRALVG 246 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 P + F V G + + G Sbjct: 247 WTFTPVDIYAILAELDSGAGEF-----GFSVSDDGGAPFHTVGAPRDSSLSLPTRDISFG 301 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + I+ + L W +PF Sbjct: 302 MYGRTWKIAFWALPPFIESLSL---------------PNPW----------LPFAMTLAI 336 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + R ++ +E +L +I+E ++D I + +GI++ N+A +L Sbjct: 337 GLLVTALVNLQMFYQARRAEQTIERS--RLAAIVEGSNDAILAKSVDGIVIDWNKAAERL 394 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 FGY + + + + E + T + ++ L+ + I Sbjct: 395 FGYSSHEAVGSKVYDLIVPEDRREEELRMLERMRHGDPMTYFRTRRIR-RDGSLVDVAIS 453 Query: 545 IKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + + DI+E + ++ E++ + ++ L Sbjct: 454 LSPIRSEVGALIGIASAARDITELVAAEKQIRELNASLERQVADRTAML 502 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 41/162 (25%), Gaps = 20/162 (12%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 R + G + + + +G A ++IG + D ++R Sbjct: 514 ERAAYAVIATNVDGTITLFNPAAERMLGYKAEELIGRATAMLFH--DPQELLDRADAMRR 571 Query: 140 QNTWYG---------------KTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGI 183 Q G T+LW G T +P+ L + +++ G G + Sbjct: 572 QGIEVGSGQRVVQALLAHNDPDTSLWTYVGKTGNRIPVRLTLCRLRTKDGTDLGVLGIAV 631 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 K K + + Sbjct: 632 --DLTEQLKYEDELKAARASAEQAGAAKADFLANMSHEIRTP 671 >gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 989 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 112/720 (15%), Positives = 257/720 (35%), Gaps = 40/720 (5%) Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 + G + I + D+ ++ + + + L P + T L +++ Sbjct: 65 ELDGIDTARRI-RQARDI-PVVFLTAYADEETIRRATAAEPYGYVLKPFDDTQLRTVVEM 122 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A + R A+ + + V Sbjct: 123 ALYKHGAE-------------RRLRESEQRYAITLSSIGDGVLSTDADGFVTFVNPAGEA 169 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + R +V L + + + + + ++ + LP + + + Sbjct: 170 LTGWSRSEATGRRLREVFRLHDEH-TRVLIDDPTAAVMQSASDGGLPARAILRVRDGSDL 228 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFVYS 337 + + + + + E E + + + Sbjct: 229 PVECTGTPMTDERGARQGIVIVFRDVTQKRRAQEAEILRETNARLEMAMYGSNVGVWEID 288 Query: 338 --HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNAIKPVMLYRSDRTC 393 G+ + + ++ D + P D+ S Sbjct: 289 MPEGDYKRGFARYSNIYEWLGFDTPHARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGV 348 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 RL + + + + + + G + ++ ++ + + Sbjct: 349 FELENRL---RHRDGTDRWVLVRGTARRDATGKPVRFVGSLVDITQLKVTEQALRASEER 405 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 E + G+A + +G L N ++ G+P + ++ + + + Sbjct: 406 FRGTFENAAVGVAHCDLDGCFLRVNHRSGEIVGWPRGALQQRRLHELIHHDFIAASIDRF 465 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 +L+ + + + + + + + +S + + DIS K ++ Sbjct: 466 -RLLTEGKLEHYSEEVPLVRVDGSRVWVTLSVALQHDASGQTSHVIVIIQDISARKALED 524 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + AK+ AE + K FLA +SHE+RTPL I+G++++++ + R + Sbjct: 525 TVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQMLQRDAR---LDARQLASVGV 581 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I++SG +L ++ND+LD +++ +GK+ L VSL + +V + A +KR+++ Sbjct: 582 IEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYV 641 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 A ++P + D R ++Q+ LN+L+NA+ FT G ++ +S + + V VRDTG+G+ Sbjct: 642 AAPDLPAVVRVDERRLRQVLLNLLANAVKFTDRG-EVTLSVSRGAAGRVRFEVRDTGIGV 700 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + LE +PF Q R G GLGL +++ +V G+ + S+ +G++ Sbjct: 701 SADRLEAIFQPFEQA-GDHTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFEL 759 Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 36/391 (9%), Positives = 94/391 (24%), Gaps = 34/391 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-------SDILHIDPNNHIGDLLK 138 + DA G++ ++ G + G RL +V + +L DP + Sbjct: 151 VLSTDADGFVTFVNPAGEALTGWSRSEATGRRLREVFRLHDEHTRVLIDDPTAAVMQSAS 210 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALG 197 +G++ +P++ P+ G F V R + L Sbjct: 211 DGGLPARAILRVR-DGSD--LPVECTGTPMTDERGARQGIVIVFRDVTQKRRAQEAEILR 267 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEY 246 + + ++ G ++ + D + PH R+ + + Sbjct: 268 ETNARLEMAMYGSNVGVWEIDMPEGDYKRGFARYSNIYEWLGFDTPHARLDYEAYMSVLH 327 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 H+D L S + + + ++ + + ++ Sbjct: 328 PDHRDST-DRAVASFLESGDGVFELENRLRHRDGTDRWVLVRGTARRDATGKPVRFVGSL 386 Query: 307 NHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361 + E T + + N + + Sbjct: 387 VDITQLKVTEQALRASEERFRGTFENAAVGVAHCDLDGCFLRVNHRSGEIVGWPRGAL-- 444 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L D A + + + + + +T + Sbjct: 445 ----QQRRLHELIHHDFIAASIDRFRLLTEGKLEHYSEEVPLVRVDGSRVWVTLSVALQH 500 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + I + + + + + Sbjct: 501 DASGQTSHVIVIIQDISARKALEDTVRVAKE 531 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 34/373 (9%), Positives = 92/373 (24%), Gaps = 18/373 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147 D G ++ + +G + RL ++ I + LL + + Sbjct: 421 DLDGCFLRVNHRSGEIVGWPRGALQQRRLHELIHHDFIAASIDRFRLLTEGKLEHYSEEV 480 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L ++G+ V + L+ + + + S I+ + + Sbjct: 481 PLVRVDGS--RVWVTLSVALQHDASGQTSHV--IVIIQDISARKALEDTVRVAKEAAEAA 536 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263 + K + + + +M + + L V++ LLT Sbjct: 537 NRAKDQFLANISHELRT-PLNGILGYAQMLQRDARLDARQLASVGVIEQSGQHLLTLIND 595 Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGEN 320 + + ++ + + + L++ P L A E Sbjct: 596 ILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDER 655 Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + ++ G + + + + G+S Sbjct: 656 RLRQVLLNLLANAVKFTDRGEVTLSVSRGAA--GRVRFEVRDTGIGVSADRLEAIFQPFE 713 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 RS + + ++ + F + P + + Sbjct: 714 QAGDHT-RRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFELDAPASTAGLGECA 772 Query: 440 TRINKRKMEIEVM 452 R+ ++ Sbjct: 773 PRLQAGSLDGARR 785 >gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1237 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 129/659 (19%), Positives = 247/659 (37%), Gaps = 53/659 (8%) Query: 183 IVHVNRVDNDPRALGKRLDKK----FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238 + N P L F ++ S + + S ++ Sbjct: 210 VFRPRMPLNTPEQRRAALLGMVHGAFRSHDLMEGILGSQTRHFDIVLRDVSAQGGELLRG 269 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + + + + PE E ++ + Sbjct: 270 EAPANGWVPRFSSQLQLPLYGRNWELALTGTPEYERSLIDRSGTFSLWSGLAVALLLALL 329 Query: 299 SFEYLSHRNH-----PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLT 352 YL R + E E V++ P+ + G + AN S L Sbjct: 330 VGGYLYQRERKLHMSEQAARDLQEREERFRLLVERLPVATVLCDAKGRIEMANRSAAELF 389 Query: 353 KYKSVDDIEI--AGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + L + L + M+ I S L+ + Sbjct: 390 DCPLNGLLGETVLRVLPNIESPQDLQEQLGESDERMVRTLRGESIPVSISLNPLH----- 444 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 E + ++ + + ++EA+ + I +++ Sbjct: 445 ----------------EGSSYLINLVDLRARKVAE-------ERFRLVVEASPNAIVLVD 481 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDLRQTLEK 527 G I NR ++FGY + +L +P + L + + R + Sbjct: 482 GLGRIAMVNRQTEQMFGYERQMLLGEPIEMLLPAALRGGHVALRRGYQAMPEQRRMGGNR 541 Query: 528 ITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 G +E +L+ L + + S + DISE + + KL + + +K Sbjct: 542 ELFGQHREGRLIPLEVGLSPIRSGNESLVQAVIIDISERRAAEQKLREQAEQLLLANRYK 601 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHE+RTPL +I+ S+ ++ G L + ++A+ + R+G+ +L ++ND+L Sbjct: 602 SEFLANMSHELRTPLNSILILSDQLRQNLAGNLT-EKQTKHADIVHRAGSDLLQLINDVL 660 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704 D++K+ESG+M L EP+++ + + E + ++ A K + + T +PR+ +D + Sbjct: 661 DLAKVESGRMQLKLEPINMQDVLVELDASLRPMAELKGLSLHTQIDAGVPRVIHSDRVRL 720 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKP 759 QI N+LSNA+ FT G ++ ++ + +E + VRDTG+G+ + E+ + Sbjct: 721 HQILRNLLSNALKFTDQG-EVTLTVSSEGRQEDERELLCFSVRDTGIGIDPAQHEQVFQA 779 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 F QI S R GTGLGL + + +V A G + STP +G+ + P+ + Sbjct: 780 FQQIDGSTSRRFGGTGLGLAITRQLVLALDGDIGLQSTPGQGSTFTVRLPVQSAPATAE 838 Score = 39.2 bits (90), Expect = 3.1, Method: Composition-based stats. Identities = 22/261 (8%), Positives = 67/261 (25%), Gaps = 16/261 (6%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 + E F V DA G ++ + + ++G + V +I+ Sbjct: 353 EREERFRLLVERLPVATVL-CDAKGRIEMANRSAAELFDCPLNGLLGETVLRVLP--NIE 409 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 + + L + + + G + +P+ ++ P++ + R Sbjct: 410 SPQDLQEQLG----ESDERMVRTLRGES--IPVSISLNPLHEGSSYLINLV------DLR 457 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + + + + + G + + + + L Sbjct: 458 ARKVAEERFRLVVEASPNAIVLVDGLGRIAMVNRQTEQMFGYERQMLLGEPIEMLLPAAL 517 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 V Y + + +E F + +++ ++ + + Sbjct: 518 RGGHVALRRGYQAMPEQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESLVQAVIIDI 577 Query: 308 HPSLSAYFDEGENLTPETVDK 328 +A E + Sbjct: 578 SERRAAEQKLREQAEQLLLAN 598 >gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588] Length = 1203 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 139/752 (18%), Positives = 254/752 (33%), Gaps = 53/752 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G L + ++ +G + M D+ + + T Sbjct: 185 TDFSGRLWQFNKAFTTVLGWPEADLQTMSALDLVHPDDTASTGKELAKMGEGASTISFTH 244 Query: 149 LWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + + A P F + + + Sbjct: 245 RVRTAEGDYRLIQWV---ATP-EPHTGNI-----FAMGRDITSETLKEQALIESETNART 295 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E G I S ++ + Y L+ Sbjct: 296 FFENSLGMMCRHDLDGHITYVNKASADSVGYSIEELLQMNLYQLIPQQYHADLDQYLINI 355 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + L N+ K S + + + + T E Sbjct: 356 RIKGKITGLMHTQHKKGHIRIWLFNNVLINDGKGSAYVIGNAADITERHELETDLKRTKE 415 Query: 325 TVDKCP----IPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 +++ I + G + + + + ++ +S + Sbjct: 416 LLERTNQVARIGGWEVDLGTQQLHWSTVTCEIHEVPEDFNLTPDNAMSFYT---GDNRIL 472 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 V ++ + L W + E + + + G + + Sbjct: 473 LDAVVEQAITNGS--PWQIELQITTWRGRKLWVRSIGHAEFEDGVCKRLY--GTFQDIDE 528 Query: 440 TRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + ++ L +LE+ S+ I + EGII N+ +L GY ++ K Sbjct: 529 KKKADLAIQQSRQLLEDVLESASEVSIIATDHEGIITLFNKGAERLLGYKAGEVTGKESW 588 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIII 545 L + LS + E + K+ + + +++ Sbjct: 589 TILHAEEEIMNRSIELSALSGQHIEGFEVFTYVPELEGSERREWTYIRKDGSQIIISMVV 648 Query: 546 KKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + ++ Y DI+E K+ + L AK AE S KS+FLA +SHEIRTPL Sbjct: 649 TPIRDNAVITGYLGIAVDITERKKAERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNG 708 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IGF++++ N +Y +++S N +L I+ND+LD SKIE+GK+ L Sbjct: 709 VIGFTDLVLKTAL----NETQQQYVAIVNQSANSLLSIINDILDFSKIEAGKIELDISKC 764 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 + E S+A ++ A +K + + + + +PR + AD+ +KQI LN+LSNA+ FT Sbjct: 765 DIYEFSSQASDILSFQAQQKGLEMLLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEK 824 Query: 722 GGQIIISTTHTSNEEV-----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G +I + + V VRDTG+G+ + EK + F Q S R GTGL Sbjct: 825 G-EIELEIKPIAYPSVGMTTIRFEVRDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGL 883 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GL ++ ++ K + ST KG+ Sbjct: 884 GLSISNKLLALMGSKLQLESTTGKGSTFFFDL 915 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 30/383 (7%), Positives = 92/383 (24%), Gaps = 26/383 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G++ +++ ++G +++ M L + + + ++ + G Sbjct: 306 RHDLDGHITYVNKASADSVGYSIEELLQMNLYQLIPQQYHADLDQYLINIRIKGKITGLM 365 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + + L I G ++ KR + Sbjct: 366 HTQHKKGHI-RIWLFNNVL-INDGKGS---AYVIGNAADITERHELETDLKRTKELLERT 420 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTEKYPLL 262 +++ + + + + +LT A + +L Sbjct: 421 NQVARIGGWEVDLGTQQLHWSTVTCEIHEVPEDFNLTPDNAMSFYTGDNRILLDAVVEQA 480 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGE 319 + S + T + + + + + + Sbjct: 481 ITNGSPWQIELQITTWRGRKLWVRSIGHAEFEDGVCKRLYGTFQDIDEKKKADLAIQQSR 540 Query: 320 NLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL---------ST 368 L + ++ G + N L YK+ + + Sbjct: 541 QLLEDVLESASEVSIIATDHEGIITLFNKGAERLLGYKAGEVTGKESWTILHAEEEIMNR 600 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 ++ LS + + + I+ + + + Sbjct: 601 SIELSALSGQHIEGFEVFTYVPELEGSERREWTYIRKDGSQI--IISMVVTPIRDNAVIT 658 Query: 429 PQNGIEPEDVDTRINKRKMEIEV 451 GI + + + +R ++ Sbjct: 659 GYLGIAVDITERKKAERDLKEAK 681 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 12/189 (6%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 A + E A I E + I + E+ + + + + I + Sbjct: 129 AFIVLHTEPARLTSNEQTALSILAEKISDTIQTNRRRQEMHYFTRLFDLSEGLVCITDFS 188 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G + N+A + + G+P D+ + + + L ++ + T+ Sbjct: 189 GRLWQFNKAFTTVLGWPEADLQTMSALDLVHPDDTASTGKELAKM--GEGASTISFTHRV 246 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF--- 588 T E ++ + P + DI+ ++ L ++ ++ ++ F Sbjct: 247 RTAEGDYRLIQWVATPEPHTGNIFAMGRDITSETLKEQALIESE------TNARTFFENS 300 Query: 589 LARVS-HEI 596 L + H++ Sbjct: 301 LGMMCRHDL 309 >gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 657 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 129/591 (21%), Positives = 230/591 (38%), Gaps = 17/591 (2%) Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 ++++V + E+ AH+ + + L ++ Sbjct: 74 RGEYGSDCDVEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTV 133 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341 + N+ + + TV P ++ + NL Sbjct: 134 NRQVAENLRDSNDRLDQMVERRTQALQDSEERHRAYGEFLEATVKHMPQGVCLFDNDLNL 193 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY-RSDRTCIAASARL 400 AN F LT+ + +++ +L + + P L R Sbjct: 194 VVANKIFFDLTQIPASFNVKGINFHEFMLYNAQRGEYGPGDPAELANRRLEIARRMEPHA 253 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + P + + + ++L+A Sbjct: 254 FDRIRPDGTVIEVRGNPIPGR-------GFISTFTDITARAKAEESLREAATMARAMLDA 306 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +I +G I+ N+ + + ++ + Y + + Sbjct: 307 PGLLVLLIRMDGTIVDLNQEAATGLSSTKDAMIGANIFTVMPPKVAERRFAYAQQAVFEG 366 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578 E ++ + + + + HD++ + +L A +A Sbjct: 367 HAVYFEDE-----RDGRWFETTMTPYPMDQDGVHRVMIIAHDVTHRHHAEQRLREATAMA 421 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + K+DFLA +SHE+RTPL AI+GFSE+I + FGP+G+ RY Y I+ +G +L Sbjct: 422 QAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPVGD-RYRIYGQDINSAGQHLL 480 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LDIS+IE G L E V+ E V + LV A I +R +P ++ Sbjct: 481 AMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTRAEAAGIRLREDLPETLPSLM 540 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D R KQI +N+L NA+ FTP+GG + + S+ + V DTG+GM+ ++ A+ Sbjct: 541 IDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMAFHVADTGIGMSEADIAIALS 600 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PFGQ+ R EG GLGLPLAK++ + + G I STP +GT + + FP Sbjct: 601 PFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEIISTPGEGTTVSVYFP 651 Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 4/140 (2%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVM--- 509 + +L+ GI++ + + ++ NR + L +P + F + N Sbjct: 20 MQGVLDHLDQGISVFSADLRLILWNRRFTDLHDFPEGFLTHGLGFADIIRFNAQRGEYGS 79 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + + + +E + ++ II + T D++ +Q Sbjct: 80 DCDVEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQVAE 139 Query: 570 KLSHAKKIAEKESSHKSDFL 589 L + ++ ++ L Sbjct: 140 NLRDSNDRLDQMVERRTQAL 159 >gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum centenum SW] Length = 780 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 125/635 (19%), Positives = 245/635 (38%), Gaps = 23/635 (3%) Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +++ + L V ++ + +P P + + LT A + Sbjct: 87 AGERQVAALAPFDGPVGRVMRKGSALLE-NTPAPTGSAGDGPAPLT---AFLGIPIMAPP 142 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + P D I Q L+ E L R+ + A + Sbjct: 143 VFTGLVALGNRPGGYDPGQIEALQPLVTTATALLRARRAEEKWALVERHMRLVRAELRDQ 202 Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + + + + + ++ + N + + Y + ++ L P+ + Sbjct: 203 KERMDQVIAGTGVGIWDWNPQTGVLIINERWAGIVGYTLAELQPVSIATWRRLVHPQDLE 262 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ++ A R+ + + G + Sbjct: 263 KAETLLEDVFAGRSPLYACDIRMR--HKAGHWVWVRDSGRIMGRDSAGRALRMVGTHLDV 320 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + R + Q+ +IL A DGI ++R+ I NRA LFG+P + I+ + Sbjct: 321 TEERRTLEQALDYRGQIEAILAAVPDGIMTVDRDLRITRVNRAAEALFGWPADSIVGQTV 380 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIKK--LPF 550 V L + + + G ++ L + + + + Sbjct: 381 DVLLPEGQAETHGRLARAFFKTEEPDARRQMAGWRAVQGRKRDGSLFPVLVTLSATLIDG 440 Query: 551 SSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + D++ + + +++ K A+ + K+ FLA +SHE+RTPL AI Sbjct: 441 QPMVVAALKDMTVIEQQKADLRALADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAI 500 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFSE++ + + EYA + ++G +L +++DLLD+++IE+ ++ L EP Sbjct: 501 IGFSELVATDTDEHIDPEKRREYAADVAQAGTHLLALISDLLDLARIEANRIELEIEPCP 560 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 D S+A+ ++ +K I + + A ++PR+ AD R+V+QI N+L NA FTP GG Sbjct: 561 PDGLTSDAVRMLGPSLRDKGIELEVAVAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGG 620 Query: 724 QIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 ++ ++ +V V DTG G+ +L +PF Q+ + ++ G GLGL ++ Sbjct: 621 RVTVTVGLDRAVPGQVRFTVEDTGCGVPADKLPLLGQPFVQVGDKRRASAPGLGLGLAIS 680 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +V+ G I S + T + P + P Sbjct: 681 RGLVERMGGMLRIESELGRWTRVSFGLPTPGGATP 715 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 25/254 (9%), Positives = 70/254 (27%), Gaps = 20/254 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKT 147 +D + ++ G A ++G + + + + + K + + Sbjct: 351 VDRDLRITRVNRAAEALFGWPADSIVGQTVDVLLPEGQAETHGRLARAFFKTEEPDARRQ 410 Query: 148 TL-------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +G+ V + L+A I + + + V +A + L Sbjct: 411 MAGWRAVQGRKRDGSLFPVLVTLSATLI---DGQPM---VVAALKDMTVIEQQKADLRAL 464 Query: 201 DKKF-SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + L + + + + + + P + + T+ H D + E Sbjct: 465 ADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYA 524 Query: 260 PLLTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAY 314 + + + + D I N+ + + ++ L + Sbjct: 525 ADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELE 584 Query: 315 FDEGENLTPETVDK 328 +L D+ Sbjct: 585 VAVAPDLPRVAADR 598 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 27/364 (7%), Positives = 79/364 (21%), Gaps = 24/364 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142 W+ + + I+E +G + + + ++ + + + + Sbjct: 217 IWDWNPQTGVLIINERWAGIVGYTLAELQPVSIATWRRLVHPQDLEKAETLLEDVFAGRS 276 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + I R+ R G + Sbjct: 277 PLYACDIRMRHKAGHWVWVRDSGR-IMGRDSAGRALRMVGTHLDVTEERRTLEQALDYRG 335 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDD 252 + + I L + + + + H Sbjct: 336 QIEAILAAVPDGIMTVDRDLRITRVNRAAEALFGWPADSIVGQTVDVLLPEGQAETHGRL 395 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 K + + + + + ++ + Sbjct: 396 ARAFFKTEEPDARRQMAGWRAVQGRKRDGSLFPVLVTLSATLIDGQPMVVAALKDMTVIE 455 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--- 369 + L E ++ +A FL ++ + G S L Sbjct: 456 QQKADLRALADEVGEQLKAAQAAN------HAKNRFLAALSHELRTPLNAIIGFSELVAT 509 Query: 370 -LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 D + + ++ +A + L + N + + P + + Sbjct: 510 DTDEHIDPEKRREYAADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAV 569 Query: 429 PQNG 432 G Sbjct: 570 RMLG 573 >gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72] gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72] Length = 613 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 115/633 (18%), Positives = 220/633 (34%), Gaps = 52/633 (8%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + L D E+ Sbjct: 6 CRLMQDESPDACIVLDADGAVRHWNGGAVRLFGYNAAEADGQLLIDLTVPPDRRAAEQAL 65 Query: 261 LLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEG 318 L E + + + + + ++ Sbjct: 66 LDDLPPLGNATHESVRQRKDGSLVHVALSMRRVHADGLPYVLTSMKDVTQLKVAREARLV 125 Query: 319 ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKY-------KSVDDI-------EIA 363 E + ++ P V + G + ++N + Y + ++ + Sbjct: 126 ETRYRDLLESMPDGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPIEALLPARLRTAHV 185 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G S P+ + R D + L + + + + Sbjct: 186 GHRSHYFGQPRTRTMGMGLELFGLRHDGSEFPLEISLSPLHTDEGTMVLSAIRDIAGRKK 245 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + +LE+ D I I+NR+G I+ N + Sbjct: 246 A--------------------------EEKFRGLLESAPDAIVIVNRDGRIVLVNSQAER 279 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541 LFGY +++ + + + + + + + + + G + + + Sbjct: 280 LFGYARSELIDQQIEMLMPERFRAQHPGHRNSFFTDPRVRPMGVGLELFGRRRNGEEFPV 339 Query: 542 RIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 I + L ++ + DI+E K+ + L + ++ K FLA +SHE+RTP Sbjct: 340 EISLSPLETEEGTLVSSAIRDITERKRFERALQEKNVELAQANAAKDHFLASMSHELRTP 399 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L AIIGF+ + + GPL N + + RS + +L ++NDLLD+++IE+GK F Sbjct: 400 LNAIIGFTGTLLMKLPGPL-NEDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVF 458 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 EPV L + E +++ A K + + + D R+ QI +N+L NAI FT Sbjct: 459 EPVDLCATLEELAVVLRPQAEAKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFT 518 Query: 720 PSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G +I ++ + V L+V D+G+G+ + + PF +I + EGTGL Sbjct: 519 EHG-RIELALARIEADGRPAVELQVADSGIGIQPDDQTRLFAPFARITPAAGPAQEGTGL 577 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL L + G+ + ST +G++ +I P Sbjct: 578 GLHLCLKLAAQLGGQIAMHSTYGEGSVFSLILP 610 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 36/389 (9%), Positives = 99/389 (25%), Gaps = 49/389 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147 +DA G ++ + + G A + G L D++ + D L ++ Sbjct: 20 LDADGAVRHWNGGAVRLFGYNAAEADGQLLIDLTVPPDRRAAEQALLDDLPPLGNATHES 79 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFS-----GFRGFGIVHVNRVDNDPRALGKRLDK 202 +G+ ++ + L+ +++ + + R+ Sbjct: 80 VRQRKDGSLVH--VALSMRRVHADGLPYVLTSMKDVTQLKVAREARLVETRYRDLLESMP 137 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + ++ +F + + + AH P Sbjct: 138 DGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPIEALLPARLRTAHVGHRSHYFGQPRT 197 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + L + + +++ + L + LS + +E Sbjct: 198 RTMGMGL--ELFGLRHDGSEFPLEISLSPLHTDEGTM--VLSAIRDIAGRKKAEE---KF 250 Query: 323 PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI--------------AGGLS 367 ++ P V G + N L Y + I+ G + Sbjct: 251 RGLLESAPDAIVIVNRDGRIVLVNSQAERLFGYARSELIDQQIEMLMPERFRAQHPGHRN 310 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P++ + R + L + + E Sbjct: 311 SFFTDPRVRPMGVGLELFGRRRNGEEFPVEISLSPL-------------------ETEEG 351 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + + +R ++ + ++L Sbjct: 352 TLVSSAIRDITERKRFERALQEKNVELAQ 380 >gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 568 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 126/552 (22%), Positives = 225/552 (40%), Gaps = 51/552 (9%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV-------- 357 + E +K PI F S G N + + +Y S Sbjct: 15 ARNLVEEALRASEEKFRNIFEKAPIGIFQSSIEGRFTSVNGTLATMFRYSSPREMIMDAR 74 Query: 358 ----DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + ++ + S + + R D + A+ + ++ EN + Sbjct: 75 DISRQLFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRLLRGATENEADL 134 Query: 414 --TFIPFEKANQFPENMPQ--------------------NGIEPEDVDTRINKRKMEIEV 451 + + +++ + E + +R + Sbjct: 135 EGFVEDITERKRAEDSLRVYQENLENLVRARTSELQDANERLTREIEERNRAERILIERE 194 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 Q ++E+ + I +G I+ NR FGY E++L + L S + Sbjct: 195 AQYRDLVESANCVILRWLPDGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPPADSTGHE 254 Query: 512 Y--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWK 565 L + I K +L+ + K + DI++ Sbjct: 255 LTSLATDIVSHPEAYAHNINENLRKNGELVWVAWTNKPILAPDGSVAEILSIGIDITQLV 314 Query: 566 QEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 + +L+ AK+ AE KS FLA +SHE+RTPL +IIGF+ ++ GP+ Sbjct: 315 HTEQALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNSIIGFTGILLQGLSGPI 374 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + + + S N +L +++D+LDISKIE+G++ + EP L E++ + + V+ Sbjct: 375 NDEQAKQ-LGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPFDLRESILKVVQSVRPL 433 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A +K + + A + I D R V+Q+ LN+LSNA+ FT GG + +S + + Sbjct: 434 AEKKGLDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQGG-VRVSCGREGDAFLT 492 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRD+G+G+ + ELE+ KPF Q+ + EGTGLGL ++K +V+ G+ + S+P Sbjct: 493 -SVRDSGIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVELMGGEIRVESSP 551 Query: 799 AKGTLIEIIFPL 810 KG+ PL Sbjct: 552 GKGSTFAFTLPL 563 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 50/166 (30%), Gaps = 4/166 (2%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + + + + +I E GI + EG S N ++ +F Y Sbjct: 4 ISTLLLSTLVNARNLVEEALRASEEKFRNIFEKAPIGIFQSSIEGRFTSVNGTLATMFRY 63 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----SLRI 543 + Q + D + + ++ +R+ Sbjct: 64 SSPREMIMDARDISRQLFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRL 123 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + DI+E K+ ++ L ++ E ++ L Sbjct: 124 LRGATENEADLEGFVEDITERKRAEDSLRVYQENLENLVRARTSEL 169 Score = 46.6 bits (109), Expect = 0.017, Method: Composition-based stats. Identities = 38/380 (10%), Positives = 84/380 (22%), Gaps = 56/380 (14%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 T N ++ SE F + + G ++ L + + + Sbjct: 11 TLVNARNLVEEALRASEEKFRNIFEKAPIG-IFQSSIEGRFTSVNGTLATMFRYSSPREM 69 Query: 115 GMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 M D+S L I P+ I + +G+ + + L Sbjct: 70 IMDARDISRQLFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRLL--RGA 127 Query: 172 NREFSGFRGFG-------------------------------------IVHVNRVDNDPR 194 + GF + N Sbjct: 128 TENEADLEGFVEDITERKRAEDSLRVYQENLENLVRARTSELQDANERLTREIEERNRAE 187 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSS-----LTEY 246 + + ++ L E I R + + L Sbjct: 188 RILIEREAQYRDLVESANCVILRWLPDGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPP 247 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 L + +++ E+ + N + E LS Sbjct: 248 ADSTGHELTSLATDIVSHPEAYAHNINENLRKNGELVWVAWTNKPILAPDGSVAEILSIG 307 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + ++ T+D+ + + +FL ++ + G Sbjct: 308 IDITQLVHTEQALRR---TLDELAWA--KERAESADHLKSAFLATMSHELRTPLNSIIGF 362 Query: 367 STLLDAPKLSDNNAIKPVML 386 + +L N + L Sbjct: 363 TGILLQGLSGPINDEQAKQL 382 >gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1255 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 135/754 (17%), Positives = 265/754 (35%), Gaps = 47/754 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146 + A + I+ IG ++ IDP +R Sbjct: 190 LGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEASRAIDPFGADETAWQRHVAEREA 249 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G+ +P + + S G R V V + + Sbjct: 250 EIRAGVAGSRQ-LPHNDGRTLVASLASLAGGKRLISYVDVTDMKGRETEAEDARKNLATV 308 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS-----------PPPHLRMKN------KVSSLTEYYAH 249 L + G +++ +F+ + P + V Sbjct: 309 LESLPAGVIIYDRDDKFVFANRKLQDSLPALKPYWQPGRTFREALEFGHSVGYFRSSGDA 368 Query: 250 KDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 D L + +N + + Y + + Sbjct: 369 VVDSLYAVDTERWLDGMLRRYRLPNSSYERLNADGRWYQVYDMRTDDGTFIGVRVDISDL 428 Query: 308 HPSLSAYFDEGE--NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364 +A D +L +D+ P+ F+ + N+ + N ++ LT D I Sbjct: 429 KSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNIEFVNKAWCALTGLAKEDVIGRTD 488 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L A + + ++ + + + Sbjct: 489 --RQLFGAEEAEGFSHDDADVVATGN-----VREVEEPVTHRDGTVRQLMTRKSRLVASD 541 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAV 481 ++ G + D + +R +E + + S+++ I + N+ Sbjct: 542 G-SVHLVGSSTDITDVKARERALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGW 600 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 L G E+ + K + + + L + + + ++ E +TL + Sbjct: 601 CDLTGLGKEEAIGKTDVEIFGPDGEAFVAGDLAVLRTGETQEIEETVTLADGSVRHQFAR 660 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + S + DI+E K + +L A++ A KS+FLA +SHEIRTP+ Sbjct: 661 KGAMIASDGSLYLIGSTTDITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMN 720 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G +E++ +P+ + + I +SGN +L I+ND+LD SKI++G++ L P Sbjct: 721 GVLGMAELLAKSNL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAP 776 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTP 720 +L EA+ + +LV A EK + + + + + D+ ++QI N+L NA+ FT Sbjct: 777 FNLAEAIEDVATLVSTRAKEKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTD 836 Query: 721 SGGQIIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G +++ T ++ + V DTG+G+ +L+ + F Q+ S R EGTGLG Sbjct: 837 EG-HVLVDVTGERMPTGTKLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLG 895 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFP 809 L + +V+ GK + S KG+ + P Sbjct: 896 LAITSRLVELMGGKIGVESAEGKGSTFWFEVTLP 929 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 50/526 (9%), Positives = 134/526 (25%), Gaps = 40/526 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143 W DA +S+ G ++G D + + + L L+ + + Sbjct: 50 IWETDAELRFSWLSQGYQAATGIDPADVLGRFRFDFLNQVLKGNRSAAAHLEDLQARRPF 109 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G + + + P + +F+G+RG G + Sbjct: 110 RDFVYELKGGGADCR-WVLTSGFPRFDSEGKFAGYRGIG--RNITALAAAFEEMAPKQDE 166 Query: 204 FSHL---------------------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 +++ + + + + + Sbjct: 167 DVSSQSLVNLRTMVDSMPIGVVVLGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEA 226 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 D +++ E + + T +L K Y Sbjct: 227 SRAIDPFGADETAWQRHVAEREAEIRAGVAGSRQLPHNDGRTLVASLASLAG-GKRLISY 285 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + + ++ ++ P +Y +AN Sbjct: 286 VDVTDMKGRETEAEDARKNLATVLESLPAGVIIYDRDDKFVFANRKLQDSLPALKPYWQP 345 Query: 362 IAGGLSTLLDAPKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF--IP 417 L + ++ V + T L + + + Sbjct: 346 GRTFREALEFGHSVGYFRSSGDAVVDSLYAVDTERWLDGMLRRYRLPNSSYERLNADGRW 405 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGII 474 ++ + ++ G+ + D + + + + Q +++ I ++ I Sbjct: 406 YQVYDMRTDDGTFIGVRVDISDLKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNI 465 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N+A L G ED++ + +H ++++ + +E+ Sbjct: 466 EFVNKAWCALTGLAKEDVIGRTDRQLFGAEEAEGFSHDDADVVATGNVREVEEPVTHR-- 523 Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKI 577 + + L +L S + DI++ K + L + + Sbjct: 524 DGTVRQLMTRKSRLVASDGSVHLVGSSTDITDVKARERALEESMRE 569 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 22/297 (7%), Positives = 69/297 (23%), Gaps = 20/297 (6%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355 +E + H + + V+ + + + + T Sbjct: 14 REPGKVAVHGGDALPHTADMDRAEGLRQLVEAGSDWIWETDAELRFSWLSQGYQAATGID 73 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 D + D + ++ ++ + + Sbjct: 74 PADVLGR-----FRFDFLNQVLKGNRSAAAHLEDLQARRPFRDFVYELKGGGADCRWVLT 128 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------LCSILEATSDGIA 466 F + + + GI +M + + L +++++ G+ Sbjct: 129 SGFPRFDSEGKFAGYRGIGRNITALAAAFEEMAPKQDEDVSSQSLVNLRTMVDSMPIGVV 188 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++ + N A + L + + ++ E E Sbjct: 189 VLGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEASRAIDPFGADETAWQRHVAERE 248 Query: 527 KITLGSTKEEKLLS-----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 + L + ++ D+++ K + + A+K Sbjct: 249 AEIRAGVAGSRQLPHNDGRTLVASLASLAGGKRLISYVDVTDMKGRETEAEDARKNL 305 >gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 897 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 119/638 (18%), Positives = 246/638 (38%), Gaps = 30/638 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSL- 243 + + L + + + + + ++ Sbjct: 22 HRLQQLETALAESENRLRDLFHLAPIGIAEISTEGYFLAVNRAFCRWVGYSQADLINLNF 81 Query: 244 -TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKE 298 + D+ + + L+ E ++ + + T + N Sbjct: 82 NAITHPEDGDICREKFGQLINREIDKYTLEKRYRHRDGHWVYGILTCYLRLDVMGNPLCA 141 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKS 356 + + E E +D P F + NL + N ++ Sbjct: 142 IAQIIDITERKRSEQEIREKEEYLRLLLDNIPQQVF-WKDTNLVFRGCNRNWAEAAGLDG 200 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + L +++ K + S + A + + + Sbjct: 201 SESVVGKTDFD-LFADADIAEFYREKDRQVLESRTPEMNVVAPKQKL-GPGGRRIWLDVS 258 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + G+ + + + K+ + Q ++ + D + + G Sbjct: 259 RIPMLDSQGNVLGILGVLEDITERKEIDEKLRLT--QFS--IDKSRDYVLFSDINGRFFY 314 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A K+ GY E++L +P + ++ + + TK Sbjct: 315 VNEAACKILGYSQEELLTMEVEDIDPLASPGGWSIAWDDLRDQG---SFTFESSHYTKTG 371 Query: 537 KLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + +++ I + L ++ + DI + KQ + L AK+ AE S KS+FLAR+SH Sbjct: 372 QAIAVEITLSYLEYNHREYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSH 431 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 E+RTPL AI+GF+++++ + + P + E+ I RSG +L+++ND+L++SKIE+ Sbjct: 432 ELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELINDVLEMSKIEA 491 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711 G+++L+ +L ++ +++L A+ K++ + + +NIP I AD + ++Q N+ Sbjct: 492 GRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNL 551 Query: 712 LSNAIHFTPSGGQI-IISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 L NAI FT GG I + ++ V+DTG G+ E++ +PF Q + Sbjct: 552 LGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRN 611 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + +GTGLGL + + + G+ + S KGT+ Sbjct: 612 SQ-QGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 648 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 43/395 (10%), Positives = 93/395 (23%), Gaps = 26/395 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQ-NTWYG 145 I GY ++ + +G +I + ++ D G L+ R+ + + Sbjct: 51 EISTEGYFLAVNRAFCRWVGYSQADLINLNFNAITHPEDGDICREKFGQLINREIDKYTL 110 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G +V L + + ++ Sbjct: 111 EKRYRHRDGH--WVYGILTCYLRLDVMGNP--LCAIAQIIDITERKRSEQEIREKEEYLR 166 Query: 206 HLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + + ++ V D+ + + Sbjct: 167 LLLDNIPQQVFWKDTNLVFRGCNRNWAEAAGLDGSESVVGKTDFDLFADADIAEFYREKD 226 Query: 262 LTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ES PE + + ++ L + D Sbjct: 227 RQVLESRTPEMNVVAPKQKLGPGGRRIWLDVSRIPMLDSQGNVLGILGVLEDITERKEID 286 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI---------EIAGGL 366 E LT ++DK +G FY N + + Y + + + G Sbjct: 287 EKLRLTQFSIDKSRDYVLFSDINGRFFYVNEAACKILGYSQEELLTMEVEDIDPLASPGG 346 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 ++ + Y IA L +++N Q Sbjct: 347 WSIAWDDLRDQGSFTFESSHYTKTGQAIAVEITLSYLEYNHREYGCAVVRDIRDRKQTEI 406 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + Q E ++ + L + L A Sbjct: 407 ALQQAKEAAETASRAKSEFLARMSHE-LRTPLNAI 440 >gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 975 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 100/519 (19%), Positives = 209/519 (40%), Gaps = 25/519 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + L E+ + + G + N + + ++ Sbjct: 120 GMVRYRMLLEDKSAKESRLNAILGTAIDGIVTIDHTGIILSFNEAASKIFGWQENQV--- 176 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 G +L ++ ++ + + D I + ++ N + + Sbjct: 177 QGKNVKMLMDDNIAKHHDEYLLNAHNVDLGKIIGINRDVYAKHMNGHVFP--IRLGIGEV 234 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREGIILSTN 478 NQ N G + + R ++ +E + + S+++ G+A + +L + Sbjct: 235 NQPGHNPLYVGFITDLTEQRALQQSLEEKEQKYRSLIDNMP-GVAFRCKFDDNWTMLFIS 293 Query: 479 RAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + +L GY + + ++ + +T+ + + ++ + Sbjct: 294 PNIIELTGYNPNEFTEHCIEFNDLVLKSDQKQIVDEVTKAVDAKSQYSI--EYRIRHRNG 351 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 K+L L + + DI+E K+ + KL AK AE+ + K F+A + Sbjct: 352 KILWLLDKGSIDFDAQGNPKWIDGVLVDITERKEYEEKLEQAKFKAEEAAHAKQSFMANM 411 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ +IIGFS+++ + + ++ ++ + +L ++N++LD +K+E Sbjct: 412 SHEIRTPMNSIIGFSDLLMDTPL----DQEQQKHLVTVNNAARSLLRLLNEILDSAKLER 467 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 GK+ + SL + IS L A +K + ++ ++ D ++Q+ N+ Sbjct: 468 GKLTIEPVHFSLKPVIDSIISTFWLEAKKKDLELKLHIKESVSSTYYGDPDRLRQVLTNL 527 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + NAI FT G + ++ T N+ + V+DTG+G+ ++ +PF Q + R Sbjct: 528 IGNAIKFTEEGS-VTVTVGMTQNQHLFFEVQDTGIGIAKDRIQAVFQPFEQADGTTTRRF 586 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLG ++K +V+ G + S KGT PL Sbjct: 587 GGTGLGTTISKQLVELMGGTINLVSELGKGTCFYFSLPL 625 >gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703] gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703] Length = 1374 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 98/542 (18%), Positives = 201/542 (37%), Gaps = 51/542 (9%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + + V+ P G + N L Y + I L Sbjct: 342 RRADRKQLQQERSKLEMIVESSPDGIIGKDTQGIVISWNGGAERLFGYTREEAIGRP--L 399 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L+ + D ++ ++A L + L ++ + Sbjct: 400 VDLIIPEQFKDEEPD--ILRRVCAGETVSAFETLR--HRKDGSELVVSATISPIRSPDGR 455 Query: 427 NMPQNGIEPEDVDTRINKR-------KMEIEVMQ-----------LCSILEATSD-GIAI 467 + + + + +R ++E +V Q ++L A + I Sbjct: 456 VIGVSKTVRDISLQKEAERRIRNLNSELEQQVRQRTTELAEVNLLFRTVLSAAHEFCIIA 515 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE- 526 + G+I N+ ++ GY +D++ K + + + Sbjct: 516 TDLNGVITFFNKGAVQMLGYSEDDVVGKATPAIFHDEDELASRRHELSDEYGEAIHGFDV 575 Query: 527 ------------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 + K+ + +++ + Y DI+ +Q ++ Sbjct: 576 FTYKAQRNQSEHREWTYWRKDGSRFPVNLVVTAMRDEQDQLLGYLGVATDITRQRQAQDA 635 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A++ + K+ FLA +SHEIRTP+ A++G +++ P R +A+ Sbjct: 636 LEKAKRQADEANEAKTMFLANMSHEIRTPMNAVLGMLQLLLRNNLTP----RQHAFASKA 691 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + +L ++ND+LD SKI++GK+ L +P + + + K I + Sbjct: 692 HIAATSLLGLLNDILDYSKIDAGKLELDPQPFDFNAVMQHLAIMFSGNLRAKSIELLFDL 751 Query: 691 ANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746 + P ++ D ++Q+ +N+LSNAI FT G I+ + + ++ + V D+G+ Sbjct: 752 DPQLSPYMIGDELRLQQVLINLLSNAIKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGI 811 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + + F Q S R GTGLGL + K +V+ G + S +G+ + Sbjct: 812 GISPEQQTRIFGEFIQAEASTTRRYGGTGLGLVICKRLVEKMAGVLEVDSALGQGSTFSL 871 Query: 807 IF 808 Sbjct: 872 TL 873 Score = 127 bits (320), Expect = 7e-27, Method: Composition-based stats. Identities = 69/458 (15%), Positives = 138/458 (30%), Gaps = 52/458 (11%) Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 F G RGFG V L + G E + Sbjct: 101 ATLDLANNFPGARGFGFVRRVLRAELADYLDRERHAHLPDFSVSSFGDEQDELYVVEYLE 160 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 +S + + + + H D ++TS S + L Sbjct: 161 PRSFSSNATVIGLDLASNPFRKHAADEAMLSGQAIITSPLSLKFGLDTISNSFLLFMPIY 220 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346 + T + ++ + P A + E+ +S G + Sbjct: 221 RDGVTPDDEAERRRKAFGWAYAPISMAEVLKNES---------------FSEGRV----- 260 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + V ++ + L PV S + + Sbjct: 261 ----ILRLSDVTELGDPMVFYRSAEQEGLYPYYHDVPV-----LGRVWRFSLTVTPAYLD 311 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 +L + I ++ + R ++++++ E +L I+E++ DGI Sbjct: 312 ---TLNLFSITGVILFGIGLSVVMAMLVNTLKLRRADRKQLQQERSKLEMIVESSPDGII 368 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTL 525 + +GI++S N +LFGY E+ + +P + L + + + Sbjct: 369 GKDTQGIVISWNGGAERLFGYTREEAIGRPLVDLIIPEQFKDEEPDILRRVCAGETVSAF 428 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581 TL K+ L + I + + T+ DIS K+ + ++ + E++ Sbjct: 429 --ETLRHRKDGSELVVSATISPIRSPDGRVIGVSKTVRDISLQKEAERRIRNLNSELEQQ 486 Query: 582 SSHKSDFLA----------RVSHE---IRTPLTAIIGF 606 ++ LA +HE I T L +I F Sbjct: 487 VRQRTTELAEVNLLFRTVLSAAHEFCIIATDLNGVITF 524 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 72/283 (25%), Gaps = 44/283 (15%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYGKT 147 D G + + + G + IG L D+ + + + + + +T Sbjct: 371 DTQGIVISWNGGAERLFGYTREEAIGRPLVDLIIPEQFKDEEPDILRRVCAGETVSAFET 430 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ L V ++ PI S + G V + + + L+ + Sbjct: 431 LRHRKDGSELVVSATIS--PIRSPDGRVIGVSK--TVRDISLQKEAERRIRNLNSELEQQ 486 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----------------------VSSLTE 245 + + + + + + V T Sbjct: 487 VRQRTTELAEVNLLFRTVLSAAHEFCIIATDLNGVITFFNKGAVQMLGYSEDDVVGKATP 546 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFH----------------TINLNQYTKKQYF 289 H +D L + ++ L ++ + F + +++ Sbjct: 547 AIFHDEDELASRRHELSDEYGEAIHGFDVFTYKAQRNQSEHREWTYWRKDGSRFPVNLVV 606 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 +++ + YL + + D+ Sbjct: 607 TAMRDEQDQLLGYLGVATDITRQRQAQDALEKAKRQADEANEA 649 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 46/156 (29%), Gaps = 20/156 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKRQNT 142 D +G + ++ + +G ++G + ++ G+ + + Sbjct: 516 TDLNGVITFFNKGAVQMLGYSEDDVVGKATPAIFHDEDELASRRHELSDEYGEAIHGFDV 575 Query: 143 WY----------GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + + T W +G+ P++L + + G+ G + Sbjct: 576 FTYKAQRNQSEHREWTYWRKDGS--RFPVNLVVTAMRDEQDQLLGYLG--VATDITRQRQ 631 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + ++ ++ +E K + + Sbjct: 632 AQDALEKAKRQADEANEAKTMFLANMSHEIRTPMNA 667 >gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB] gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB] Length = 955 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 124/634 (19%), Positives = 226/634 (35%), Gaps = 38/634 (5%) Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 +F L + A SE S + + Sbjct: 48 RALRLFGFDDREELLHTPPSKIFPEAHSAVMKSDKAWSDQLRNASETGSAHFETLCQRRS 107 Query: 280 LNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VY 336 Q+ + L + E +D P + Sbjct: 108 GEQFAAEVLISALSYEGGRILQVSVCDISARRRTEEALLESHKQFKGIIDFFPDAVLAID 167 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIE--------IAGGLSTLLDAPKL--SDNNAIKPVML 386 + G + N + +T + + I G + A + + + Sbjct: 168 TEGKVIAWNRAMEQMTGAPAGEVIGRGNYEHGFQIYGTRRPILADLVLNPQEDIERAYPR 227 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + + + + + + + + D R+ +R Sbjct: 228 FYRKGNYLISDTSSSKLSDTLGKDYFTSVAATPLYDDEGKIIGAIESIRDISDRRLAERA 287 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR------------ 494 + + I++ D I ++ EG +++ N A+ ++ G P E++L Sbjct: 288 LAESQRRFKDIIDFFPDAILAVDIEGRVVTWNHAMEQMTGIPAEEMLGKGNYEYALPFYG 347 Query: 495 --KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 +P + L + H+ I R E + L L S Sbjct: 348 TRRPILIDLAMRPQEEIEHHYVSIHREGNRLLGETYIANLH--GGNIFLSGTATALYDSK 405 Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + ++ DIS+ K + L AK+ A+ + KS FLA +SHE+RTPL AIIG+SE Sbjct: 406 GRMIGAIESLRDISDRKATEVALQQAKEAADAANRSKSAFLANMSHELRTPLNAIIGYSE 465 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + G +I + I +G +L ++ND+LD+SKIE+ K+ L+ E S+ E + Sbjct: 466 L-LQEEAEEAGVNHFISALDRIHSAGKHLLGLINDILDLSKIEASKIELYPETFSVSEMI 524 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + + ++ + ADL ++Q N+LSNA FT SG I ++ Sbjct: 525 ESIVKIADPLVKKNGNILIVKGCETGGEMHADLTRLRQCLFNLLSNAAKFTTSG-VITLT 583 Query: 729 TTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T E + + DTG+GMT ++E+ + F Q +S + GTGLGL + + Sbjct: 584 VSRTQEAEQEWMNFSLHDTGIGMTPQQMERLFQTFTQADSSTTRKFGGTGLGLTITRNFC 643 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S KG+L I P + P + Sbjct: 644 RLMGGDITVESEYGKGSLFTIRIPAVTAAGPAEA 677 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVM 509 + E++ + + ++ GI N +LFG+ E++L P + + +VM Sbjct: 20 ESLFRELFESSGNALILL-ESGIFRHCNLRALRLFGFDDREELLHTPPSKIFPEAHSAVM 78 Query: 510 ---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEW 564 + ++ + + TL + + + ++I L + +++ DIS Sbjct: 79 KSDKAWSDQLRNASETGSAHFETLCQRRSGEQFAAEVLISALSYEGGRILQVSVCDISAR 138 Query: 565 KQEKNKLSHAKKI 577 ++ + L + K Sbjct: 139 RRTEEALLESHKQ 151 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 31/276 (11%), Positives = 68/276 (24%), Gaps = 36/276 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-----------RLCDVSDILHIDPNNHIGDL- 136 ID G + + + + G A ++IG + L ++P I Sbjct: 166 IDTEGKVIAWNRAMEQMTGAPAGEVIGRGNYEHGFQIYGTRRPILADLVLNPQEDIERAY 225 Query: 137 ---LKRQNTWYGKTTLWPIEGTNLYVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDND 192 ++ N T+ + T +AA P+Y + G + Sbjct: 226 PRFYRKGNYLISDTSSSKLSDTLGKDYFTSVAATPLYDDEGKIIGA--IESIRDISDRRL 283 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSL 243 ++F + + + + + L N +L Sbjct: 284 AERALAESQRRFKDIIDFFPDAILAVDIEGRVVTWNHAMEQMTGIPAEEMLGKGNYEYAL 343 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---------TLQN 294 Y + ++ P E + + + + Y + G L + Sbjct: 344 PFYGTRRPILIDLAMRPQEEIEHHYVSIHREGNRLLGETYIANLHGGNIFLSGTATALYD 403 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + S + E D Sbjct: 404 SKGRMIGAIESLRDISDRKATEVALQQAKEAADAAN 439 Score = 46.2 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 36/150 (24%), Gaps = 15/150 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147 +D G + + + + G A +M+G + + + I ++ Q Sbjct: 309 VDIEGRVVTWNHAMEQMTGIPAEEMLGKGNYEYALPFYGTRRPILIDLAMRPQEEIEHHY 368 Query: 148 TLWPIEG------------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 EG + + A +Y G + Sbjct: 369 VSIHREGNRLLGETYIANLHGGNIFLSGTATALYDSKGRMIGA--IESLRDISDRKATEV 426 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 ++ + + K + + Sbjct: 427 ALQQAKEAADAANRSKSAFLANMSHELRTP 456 >gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella amazonensis SB2B] Length = 1287 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 132/669 (19%), Positives = 248/669 (37%), Gaps = 42/669 (6%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + EF G RGFG + V AL LD + + + D+F + Sbjct: 101 RDYSHEFPGARGFGFIQYVPVS----ALDTFLDSSAMERPDGRFALRQLNPHDDDLFVIR 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P R K V +++ + + + Sbjct: 157 FIEPEARNKQAVGLDIGSESNRRQAALRSARENSVTLTGPITLVQASQKSLQGFLILMPV 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + T + + + + DE N + + + + G+ Sbjct: 217 YRTPDSETSSTTGMANLVGWSYAPILIDEVLNTISGLEEHLVLTIYDVTDGSAQQFFQRG 276 Query: 349 L---LLTKYKSVDDIEIAGGLSTLLDAP------KLSDNNAIKPVMLYRSDRTCIAASAR 399 LT+++ DI + G L +P +++ ++ IA Sbjct: 277 AHDVALTQHQVDADIGLFGRDWRLSLSPDPAFIQRMALPEPSSTLLDAWLISLLIAVLVY 336 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + W R + A + + +E + ++E + +IL+ Sbjct: 337 SGQLMWMRRAVVLQHRRELASAEEKALLSAKAKLEQLVHER---TSQLEKMGVLQRTILD 393 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--------- 510 A S I + EGII N + +L G+ ++++ V Sbjct: 394 AASYAIIATDTEGIITVFNPSAERLLGFTAKEMVGLQTPAIFHLEEEVVRRATQLSEELG 453 Query: 511 -------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDI 561 T + + + L + + Y +D+ Sbjct: 454 TKIEPGFDAFVAKSRRGKEDTNNWTYVSKSGARITVKLSVTTLYGEDKDIMGYLGIAYDL 513 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + + +L+ A++ A + S KSDFLA +SHEIRTP+ A++G ++ P Sbjct: 514 TEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPP---- 569 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 R +Y ++ +L ++ND+LD SKIE+G++ L + SL + + + S++ + Sbjct: 570 RPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQQ 629 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE--EV 737 K I + A ++P +++ D ++QI LN+L+NAI FT G I I + + Sbjct: 630 KDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGTCHL 689 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + ++D+G+GMTN + K F Q +S R GTGLGL + + +V G+ + S+ Sbjct: 690 HIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVTSS 749 Query: 798 PAKGTLIEI 806 P G+ I Sbjct: 750 PGVGSTFTI 758 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 29/251 (11%), Positives = 69/251 (27%), Gaps = 23/251 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNNHIG 134 D G + + + +G A +M+G R +S+ L Sbjct: 402 TDTEGIITVFNPSAERLLGFTAKEMVGLQTPAIFHLEEEVVRRATQLSEELGTKIEPGFD 461 Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + + T W + + + + L+ +Y +++ G+ G I + Sbjct: 462 AFVAKSRRGKEDTNNWTYVSKSGARITVKLSVTTLYGEDKDIMGYLG--IAYDLTEQLKR 519 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 ++ K + + P + + +L + Sbjct: 520 EQELADAREQALQASRAKSDFLANMSHEIRT------PMNAVLGLLQMTLQTELPPRPRD 573 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + S + L + DF I + ++ +LQ + LS + Sbjct: 574 YLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQQKDIE 633 Query: 314 YFDEGENLTPE 324 + P+ Sbjct: 634 LVYQVAPSVPD 644 >gi|298241407|ref|ZP_06965214.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554461|gb|EFH88325.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 1101 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 109/772 (14%), Positives = 236/772 (30%), Gaps = 48/772 (6%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD +++ + S + W+ G ++ ++ ++ Sbjct: 358 TDIDEQKRAEQRIKASRENLRVLAETVP-QLVWSTGPDGLTQDWNQRYADYFQATPEQLR 416 Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G D D + L+ + T Y A+P+ Sbjct: 417 GYGWRQFLDPEEYDHVCTVRDRSLETGEPYA-IEYRLKEGKTGSYRWFLARAMPVRDDVG 475 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPP 231 + + FG K + + L E + D F+Q+ Sbjct: 476 QIV--KWFGTCTDIEDQKRAEQQLKTSEANWRVLAETVPQLVWTTRADGLSDYFNQRFCD 533 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQY 288 ++ + + + + P + + Sbjct: 534 YTHATWEQLYGYGWSQFVHPEDYEHTLAARTHAFRTGTPHEVAYRFREGQTGRYRWFLAR 593 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGNL-FY 343 +++ + + ++ + E E + P + L Y Sbjct: 594 AMPVRDETGQIVKWFGTATDIDEQKRAEQKIKESEENLRVLAETVPQLVWSTGPDGLHEY 653 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N + T L+ A+ RL Sbjct: 654 TNQRWRDYTGLTPEQVQSNRWAHLQLIHPDDREGTRAL--WQHAHDTGAMYEREERLRNG 711 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 Q ++ + + G + D + + + + +++ + Sbjct: 712 QT--GAYRWFLVRAIPVRDEAGQIVKWIGTGTDIEDQKRIEEALRQSQERASTLMNSN-- 767 Query: 464 GIAIIN-REG-IILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSL 519 I N EG I+ N ++ GY ED+ + E+ + Sbjct: 768 -IIGTNIAEGEQIVDANDTFLRMTGYTREDLRAGRINWMRMTPPEFLARTQQAHEELATQ 826 Query: 520 DLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 EK + K+ L + + + S + D S K+ + + Sbjct: 827 QSMPPYEKEYMC--KDGSRLPVLVGRVVLEHHPSQAIGFVLDNSARKELEQR-------- 876 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 K DF++ SHE+R PL A+ ++ + +R + + ++ + Sbjct: 877 ------KDDFISMASHELRNPLAAVKMQTQ-LVRKRLERQSHHEAATALSRVEGPVKQLE 929 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ +LLD+SKI++G++ E V LD + E +Q + I++R ++ Sbjct: 930 RLIGELLDVSKIQAGRLEYVRETVDLDALLHEVADTMQQLSTTHTIVVR---GAAPRLLV 986 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + Q+ N++SNAI ++P + + + + V +RV D G+G+ + +K + Sbjct: 987 GDKDRLGQVFTNLISNAIKYSPGAETVEMDLSASEE-RVTVRVHDHGLGIPREQRDKIFE 1045 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + +Q G G+GL + +V + G + S KG+ + PL Sbjct: 1046 RFYRATGPKQKAIPGLGMGLYIVTEIVKRHEGTITVDSEVGKGSTFTVTLPL 1097 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 43/511 (8%), Positives = 111/511 (21%), Gaps = 29/511 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 W G + G + + G + ++ + Sbjct: 261 VWMNRPDGSRDYCNRRWCDYTGMTSEQAQGDGWLQAIHPDDQQRILEMWQRAVQTCMPYE 320 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + Y A+P + FG K + Sbjct: 321 -VELRLRQGTSGEYRWFLAQAMPHKDDQGTI--LKWFGTNTDIDEQKRAEQRIKASRENL 377 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLK---TEKY 259 L E ++ + T + Sbjct: 378 RVLAETVPQLVWSTGPDGLTQDWNQRYADYFQATPEQLRGYGWRQFLDPEEYDHVCTVRD 437 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L + E E + ++++ + ++ ++ Sbjct: 438 RSLETGEPYAIEYRLKEGKTGSYRWFLARAMPVRDDVGQIVKWFGTCTDIEDQKRAEQQL 497 Query: 320 NLTPE----TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + P + L Y N F T + + + + G S + Sbjct: 498 KTSEANWRVLAETVPQLVWTTRADGLSDYFNQRFCDYT-HATWEQLYGYGW-SQFVHPED 555 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 A + +A R ++ + + G Sbjct: 556 YEHTLAARTHAFRTGTPHEVAYRFREGQT----GRYRWFLARAMPVRDETGQIVKWFGTA 611 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + ++K++ L + E + +G+ TN+ G E + Sbjct: 612 TDIDEQKRAEQKIKESEENLRVLAETVPQLVWSTGPDGLHEYTNQRWRDYTGLTPEQVQS 671 Query: 495 KPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551 + + + E+ + + + Sbjct: 672 NRWAHLQLIHPDDREGTRALWQHAHDTGA--MYEREERLRNGQTGAYRWFLVRAIPVRDE 729 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIA 578 + + T DI + K+ + L +++ A Sbjct: 730 AGQIVKWIGTGTDIEDQKRIEEALRQSQERA 760 Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats. Identities = 47/515 (9%), Positives = 124/515 (24%), Gaps = 38/515 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D + + G ++ G ++ + + + Sbjct: 25 VDDTEAIVYANASAQTLTGTPREELCGTSLWSGAPHLVSPSLYQAVQKAKQTREP-SEVE 83 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + P + + ++ P G+ + + +P L L + Sbjct: 84 YVSP----ATHRWLHVSLSPT-DE----------GLALLFQEQLEPLPLQDALSRNEQMY 128 Query: 208 HEIKKGHSS----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 ++ + + V E + Q P ++ + L Sbjct: 129 RDLLESFADGVTIVTPEGLVLDINQRPLTDAHLRREEVVGKPLTDLPAWSSDPVVQEHLR 188 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----HPSLSAYFDEGE 319 + + E + + + + E Sbjct: 189 AAIARAARGETVR-FEAKIHPRPDLSLDILMTITAHRDASQQVEYLICAGRDITERKHAE 247 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + V P ++ G+ Y N + T S + G L + + Sbjct: 248 DELRTLVAAIPQHVWMNRPDGSRDYCNRRWCDYTGMTSEQA-QGDGWLQAIHPDDQQRIL 306 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R+ +TC+ L Q + + G + Sbjct: 307 EMWQ-----RAVQTCMPYEVELRLRQGTSGEYRWFLAQAMPHKDDQGTILKWFGTNTDID 361 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + +++++ L + E + +G+ N+ + F E + + Sbjct: 362 EQKRAEQRIKASRENLRVLAETVPQLVWSTGPDGLTQDWNQRYADYFQATPEQLRGYGWR 421 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 FL+ + L +E K + + Sbjct: 422 QFLDPEEYDHVCTVRDRSLETGEPYAIEYRL-KEGKTGSYRWFLARAMPVRDDVGQIVKW 480 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T DI + K+ + +L ++ + + Sbjct: 481 FGTCTDIEDQKRAEQQLKTSEANWRVLAETVPQLV 515 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 93/264 (35%), Gaps = 22/264 (8%) Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + P + + P FFV + YAN S LT + + P Sbjct: 4 AKQNKRVAPASRETLPDAFFVVDDTEAIVYANASAQTLTGTPREELCGTSLWSGA----P 59 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 L + + V + R + L ++ P ++ + Sbjct: 60 HLVSPSLYQAVQKAKQTREPSEVE----YVSPATHRWLHVSLSPTDEGLAL--------L 107 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E ++ + + +LE+ +DG+ I+ EG++L N+ E+++ Sbjct: 108 FQEQLEPLPLQDALSRNEQMYRDLLESFADGVTIVTPEGLVLDINQRPLTDAHLRREEVV 167 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 KP T ++ V+ +L ++ R +T+ + + L + + I +S Sbjct: 168 GKPLTDLPAWSSDPVVQEHLRAAIARAARGETVRFEAKIHPRPDLSLDILMTITAHRDAS 227 Query: 553 CYSLTM----HDISEWKQEKNKLS 572 + DI+E K +++L Sbjct: 228 QQVEYLICAGRDITERKHAEDELR 251 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 38/121 (31%), Gaps = 7/121 (5%) Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E D +++ I+ N + L G P E++ + + + Sbjct: 16 ETLPDAFFVVDDTEAIVYANASAQTLTGTPREELCGTSLWSGAPHLVSPSLYQAVQKAKQ 75 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 +E ++ + + L + + +L + E ++ LS +++ Sbjct: 76 TREPSEVEYVSPATH---RWLHVSLSPT----DEGLALLFQEQLEPLPLQDALSRNEQMY 128 Query: 579 E 579 Sbjct: 129 R 129 >gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217] Length = 1205 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 125/667 (18%), Positives = 251/667 (37%), Gaps = 49/667 (7%) Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238 R +G + ++ + +F+ + E + + ++ S + + Sbjct: 260 RVYGAFQDISNRKKHQLAREKAENRFTKVFENSSIGIVLVNHQSNLVMANSSARRIFGLD 319 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--------PEQEDFHTINLNQYTKKQYFG 290 +S DVL E P ++L + + + + Sbjct: 320 HLSEEEVLEYTIKDVLLPEYIPEAIENRTALMSGDIDHYQMEVECYHGSGKVIWCSFSCS 379 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF-FVYSHGNLFYAN 345 + +S ++ + + + + P V HG N Sbjct: 380 MITETEAQSKLVITQVEDITKRKSLERRALENASKFKRVFEYSPNGMALVDLHGRWRSVN 439 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + + Y + +++ +L + D + + + Sbjct: 440 HNLAQMIGYSREELLKM-----SLREITHPEDRENDAQLFSKIITKELTNYQVEKRYLHK 494 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + ++ G + D K+ +E + ++ IL++T+ I Sbjct: 495 DGSLVHCF-LTVSGLFDERGNVRSLIGQVVDMTDEINAKKALESSLNEMRVILDSTTQVI 553 Query: 466 AI-INREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSL--- 519 + + + II N+ L GY E+++ KP +++ + E Sbjct: 554 IVETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIFHVDEEVENYALKLKEEYGEQVDK 613 Query: 520 --------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567 + + + K+ +++++ + Y DIS K Sbjct: 614 HDVFTYKINRGELETRDWTYVRKDGTTFPVQLVVTAIKDDEGKTTGYLGVSADISALKAM 673 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+ AE + +KS+FLA +SHEIRTPL +IGF++++ N +Y Sbjct: 674 EYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKSPL----NENQQKYM 729 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +LD++ND+LD SKIE+GK++L E V++ E ++ +++ A +K I + Sbjct: 730 ETIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHEAYQKNIEVL 789 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILR 740 + I + I+AD ++QI +N+LSNA+ FT G +I + ++ + Sbjct: 790 LNIPQKIDQYIIADGLRLRQILINLLSNAVKFTHDG-EIELKVEEQNSALHPNKKQFTFS 848 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 +RDTG+G++ L++ K F Q S + GTGLGL ++ ++ K + ST Sbjct: 849 LRDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESKLEVRSTLGV 908 Query: 801 GTLIEII 807 GT Sbjct: 909 GTTFYFT 915 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 46/378 (12%), Positives = 115/378 (30%), Gaps = 69/378 (18%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 ++ I + + + + + G + + + ++ E Sbjct: 224 EEGVSFDDEFIIITADGKEKWV--RSMGKAEFENGVCIRVYGAFQDISNRKKHQLAREKA 281 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTVFLEQNTPS 507 + + E +S GI ++N + ++ N + ++FG E++L L Sbjct: 282 ENRFTKVFENSSIGIVLVNHQSNLVMANSSARRIFGLDHLSEEEVLEYTIKDVLLPEYIP 341 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 T ++S D+ + K++ + + + DI++ Sbjct: 342 EAIENRTALMSGDIDH-YQMEVECYHGSGKVIWCSFSCSMITETEAQSKLVITQVEDITK 400 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDF------LARVSHEI-------RTPLTAIIGFS-EV 609 K + ++ E S K F +A V ++ L +IG+S E Sbjct: 401 RKSLE------RRALENASKFKRVFEYSPNGMALV--DLHGRWRSVNHNLAQMIGYSREE 452 Query: 610 IKNQRFGPLGNPRYIE-----YANYIDRSG-------NLVLD---IVNDLLDISKIESGK 654 + + +P E ++ I + + +V+ L +S Sbjct: 453 LLKMSLREITHPEDRENDAQLFSKIITKELTNYQVEKRYLHKDGSLVHCFLTVS------ 506 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRIL-------IRTSFANNIPRILADLRSVKQI 707 L E ++ + + + + +K + + + + DL + + Sbjct: 507 -GLFDERGNVRSLIGQVVDMTDEINAKKALESSLNEMRVILDSTTQVIIVETDLDHIIRK 565 Query: 708 AL----NILSNAIHFTPS 721 N+L +T Sbjct: 566 FNKGAENLLG----YTAE 579 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 25/264 (9%), Positives = 80/264 (30%), Gaps = 29/264 (10%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F + P + +D HG + ++ L + IG +++ M L +++ + + + Sbjct: 419 FEYSPNGMAL-----VDLHGRWRSVNHNLAQMIGYSREELLKMSLREITHPEDRENDAQL 473 Query: 134 GDLLKRQNT--WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + + + + +G+ ++ + ++ L + G +V + N Sbjct: 474 FSKIITKELTNYQVEKRYLHKDGSLVHCFLTVSGL--FDERGNVRSLIG-QVVDMTDEIN 530 Query: 192 DPRALGKRL---DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 +AL L ++ + ++ + + + Sbjct: 531 AKKALESSLNEMRVILDSTTQVIIVETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIF 590 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDF----------------HTINLNQYTKKQYFGTL 292 H D+ ++ L + + + F + + + + Sbjct: 591 HVDEEVENYALKLKEEYGEQVDKHDVFTYKINRGELETRDWTYVRKDGTTFPVQLVVTAI 650 Query: 293 QNNSKESFEYLSHRNHPSLSAYFD 316 +++ ++ YL S + Sbjct: 651 KDDEGKTTGYLGVSADISALKAME 674 Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 20/154 (12%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNN 131 D +++ ++ +G A ++IG + + + +D ++ Sbjct: 556 ETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIFHVDEEVENYALKLKEEYGEQVDKHD 615 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + R T +GT P+ L I + +G+ G + Sbjct: 616 VFTYKINRGELETRDWTYVRKDGTTF--PVQLVVTAIKDDEGKTTGYLG--VSADISALK 671 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + +K ++ K + + Sbjct: 672 AMEYSLIKAKQKAEAANKYKSEFLANMSHEIRTP 705 >gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1268 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 124/754 (16%), Positives = 266/754 (35%), Gaps = 56/754 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLW 150 G + E + +G ++ + D + + L + + G+ + Sbjct: 369 QGQILEANITAATLLGLTKG-LVKPPIFRFIFKEDADIYYRLHERLTKTDELQTGELRMV 427 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +GT + L+ + ++ + + + Sbjct: 428 KADGTPA--WVQLSISAAQDNDTPVIRI----VMMDISERKRTEEALFKASALQNAIFNS 481 Query: 211 KKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 S K I + ++ +T + L + Sbjct: 482 ANFSSIATDAKGVIQIFNVGAEHMLGYTAADVMNKITPAEISDPQEVIARAKALSVELGT 541 Query: 268 SLPE-----------------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + + + +++ L++ YL Sbjct: 542 PIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQDTIIGYLLIGTEIK 601 Query: 311 LSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 A + + G + N + Y + + + Sbjct: 602 AGALQ-------SAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMNKITPAEIS 654 Query: 370 LDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 ++ A L I L I+ + A+ Sbjct: 655 DPQEVVARAKALSVELGTPIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAV-VSVTA 713 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTN 478 + + I ++ + + ++ ++E+ +D I +++ EG ++S N Sbjct: 714 LRDAQNAIIGYLLIGTDNSARKQVEEQLRWTEESFRLMVESVTDYAIVMLDPEGRVVSWN 773 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++ GY E+I+ + F+ F ++ + R E K Sbjct: 774 SGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQ-RDLDIVTARGRFEDEGWRVRKNGST 832 Query: 539 LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 ++ + Y+ D++E K+ +L AK +AEK + KSDFL+ +SH Sbjct: 833 FWANVVYTAIRDQSGNLRGYAKLTRDLTERKRLDQELERAKSVAEKANLAKSDFLSSMSH 892 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AI+GF+++++ P + + I ++G +L+++N++LD++ IESGK Sbjct: 893 ELRTPLNAILGFAQLLEAGSPPPTDAQKIR--LHQIIKAGWYLLELINEILDLALIESGK 950 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 ++L EPV+L + + E ++++ A ++ I + + AD VKQ+ +N+LSN Sbjct: 951 LSLSREPVALIDVIIECQAMIEPQAQQRDIKLTFIPFDETWFASADRTRVKQVLINLLSN 1010 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI + G + + ++ E + + V+DTG G+ +L + +PF ++ + EGT Sbjct: 1011 AIKYNREHGTVEVKCIESTPERLRISVKDTGEGLAPEKLAQLFQPFNRLGQESSGK-EGT 1069 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 G+GL + K +V+ G + ST G+ I Sbjct: 1070 GIGLVVTKQLVELMGGAIGVESTVGVGSEFWIDL 1103 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 57/565 (10%), Positives = 136/565 (24%), Gaps = 77/565 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT----- 142 DA + ++ + G G + ++ I++ +++ Sbjct: 214 TDAEARITLMNPLAEQLTGWTQVSAAGRPVDEIFHIVNKATRQPAAIPVMETLAHGTIQG 273 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGK 198 T L +G+ I + PI R+ + G + V + + Sbjct: 274 LANHTVLIARDGS--ECDIADSCAPIRDRDAQMIGA--VLVFRDVSGEYAVQHTLQVQQV 329 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------- 249 L+ + L + + S + +D+++ + A Sbjct: 330 ELELQNEELRDSQMALSILRTRYFDLYNLAPMGYCTLSEQGQILEANITAATLLGLTKGL 389 Query: 250 -----------KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 +D + + LT + + + + Q+N Sbjct: 390 VKPPIFRFIFKEDADIYYRLHERLTKTDELQTGELRMVKADGTPAWVQLSISAAQDNDTP 449 Query: 299 --SFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYK 355 + + L + + G + N + Y Sbjct: 450 VIRIVMMDISERKRTEEALFKASALQNAIFNSANFSSIATDAKGVIQIFNVGAEHMLGYT 509 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLHTIQW 405 + D + ++ A L I L I+ Sbjct: 510 AADVMNKITPAEISDPQEVIARAKALSVELGTPIEPGFEALVFKASRGIEDIYELTYIRK 569 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + A+ + + I E + +I + + Sbjct: 570 DGSRFPAV-VSVTALRDAQDTIIGYLLIGTEIKAGALQ-----------SAIFNSANFSS 617 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + +G+I N ++ GY +++ K + L+ L + Sbjct: 618 IATDAKGVIQIFNVGAERMLGYTAAEVMNKITPAEISDPQEVVARAKALSVELGTPIEPG 677 Query: 525 LE-------------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567 E K+ + + L + Y L D S KQ Sbjct: 678 FEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQNAIIGYLLIGTDNSARKQV 737 Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592 + +L ++ +D+ + Sbjct: 738 EEQLRWTEESFRLMVESVTDYAIVM 762 Score = 97.4 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 36/328 (10%), Positives = 75/328 (22%), Gaps = 39/328 (11%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 A G +G + N + Y SV Sbjct: 14 APGSVEGITEVRRQKALLKTGALQNAILNSANFSSIATDENGVIQIFNVGAERMLGYMSV 73 Query: 358 DDIEIAGGLSTLLDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLHTIQWNR 407 D + ++ A L I L I+ + Sbjct: 74 DVLNKITPADISDPQEVIARAEALSVELGTPITPGFEALVFKASRGIEDIYELTYIRKDG 133 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--------------------- 446 A+ + + I ++ ++ + + Sbjct: 134 SRFPAI-VSVTALRDAQGGIIGYLLIGTDNTARKLVEAERQRLLEIQEETNKQQQQQTNA 192 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--- 503 ++ +L L + D + + E I N +L G+ +P Sbjct: 193 LQASEERLAVTLNSIGDAVIATDAEARITLMNPLAEQLTGWTQVSAAGRPVDEIFHIVNK 252 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559 T + E L+ Q L T+ ++ + + L Sbjct: 253 ATRQPAAIPVMETLAHGTIQGLANHTVLIARDGSECDIADSCAPIRDRDAQMIGAVLVFR 312 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSD 587 D+S ++ L + E ++ D Sbjct: 313 DVSGEYAVQHTLQVQQVELELQNEELRD 340 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 15/161 (9%), Positives = 41/161 (25%), Gaps = 6/161 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGK 146 +D G + + + G A +++G + I+ DL + + + + Sbjct: 763 LDPEGRVVSWNSGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQRDLDIVTARGRFEDE 822 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G+ + + I ++ G+ + +R Sbjct: 823 GWRVRKNGSTFWANVV--YTAIRDQSGNLRGYAK--LTRDLTERKRLDQELERAKSVAEK 878 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + K S + ++ T+ Sbjct: 879 ANLAKSDFLSSMSHELRTPLNAILGFAQLLEAGSPPPTDAQ 919 >gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 957 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 127/544 (23%), Positives = 223/544 (40%), Gaps = 26/544 (4%) Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + + L +E+ + L H + E ++ P ++ Sbjct: 275 LAGSLLWRFLGIRRLNRQLQEANQRLETEISEHNQAVRLLKKNEQFQKTLIETLPDLVWL 334 Query: 336 YSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + NP F L K + I +L+D + + + Sbjct: 335 KDPDGVYLGCNPRFEELYGAKQSEIIGK---TDYDFVERELADFFRENDRKAAAAGKPTV 391 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 T I + + G+ + + + + + Sbjct: 392 NEEWLTFT---ESGYRGLFETIKTPMFDTDGTLLGVLGVARDISERARAYELLRLSEEKF 448 Query: 455 CSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + + D + +NR +G L N + + GY E++L K P+ Sbjct: 449 ATAFRVSPDSV-NLNRLSDGTYLEVNEGFTAIAGYQPEEVLGKSSLELNIWANPADRLQL 507 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + E+ K+ L++ + I + C DISE K+ + + Sbjct: 508 VQELQQHGF--VRNLEAQFRCKDGSLITGQMSARIITVNGEQCLLNITRDISERKRYEEE 565 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE + KS+FLA +SHEIRTP+ +IG ++++ R N EY + Sbjct: 566 LQQARQAAEAANRAKSEFLANMSHEIRTPMNGVIGMVQLLQFTRL----NSEQQEYLQCL 621 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S +L ++ND+LD+SKIE+GK++L + SL ++ E ++ ++KR+ + TS Sbjct: 622 ETSAQNLLSLLNDILDLSKIEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSL 681 Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745 A++IP IL D +KQI LN+L NAI FT +G I I+ T + + L V DTG Sbjct: 682 ADDIPEILHGDPLRLKQILLNLLGNAIKFTAAGS-ITIAARITDQQNGTLTICLSVSDTG 740 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT L++ PF Q NS R GTGLGL + + + + G+ + S+ G+ Sbjct: 741 IGMTPEALQRIFAPFEQADNSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFF 800 Query: 806 IIFP 809 + P Sbjct: 801 VELP 804 Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 6/137 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142 W D G + + G ++IG D + D N + T Sbjct: 331 LVWLKDPDGVYLGCNPRFEELYGAKQSEIIGKTDYDFVERELADFFRENDRKAAAAGKPT 390 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + G + P++ + G G + L + ++ Sbjct: 391 VNEEWLTFTESG--YRGLFETIKTPMFDTDGTLLGVLG--VARDISERARAYELLRLSEE 446 Query: 203 KFSHLHEIKKGHSSVEK 219 KF+ + ++ + Sbjct: 447 KFATAFRVSPDSVNLNR 463 >gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1210 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 133/749 (17%), Positives = 251/749 (33%), Gaps = 104/749 (13%) Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + + G ++ E + + L+ + + + G + Sbjct: 253 ATILNGEIFQGIEVVFGREDGQQFHLL-LSGRALLNSKNQIQGC--VVTLTNITARKQSE 309 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSS 242 + ++F + E ++ P K Sbjct: 310 QALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWTELTGYTHQDIPTIADWTQKAYG 369 Query: 243 LTEYYAHKD-DVLKTEKYP---------------------------LLTSEESSLPEQED 274 + ++ D L P L + D Sbjct: 370 TRQGLVQENIDQLYHLDQPIGEGEYTIITRNGSTRIWDFSSAPLGKLSDGRRMVISTALD 429 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIP 332 + +Q TL+ +E + L + ++ Sbjct: 430 VTLRKQAELELQQANATLEVRVEERTKALQQELQTRHQAEQELRASQARFAGILEIASDG 489 Query: 333 FF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 V ++ + N + Y+ + + LL + + + S Sbjct: 490 IISVDANQRIILFNQGAEKMFGYRVSEVLGQPLD---LLLPNRYTIAHHQHIKTFSHSQG 546 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 R I R++ + + + + + + K++ Sbjct: 547 KARRMGER-QAIFGRRKDGTEFPAEASISKLTLGDQVVFTAFVQDITERKQFEEKLQQSE 605 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L +I+ AT DGI I++R+G + N A ++LF + +L + + L Sbjct: 606 TRLKTIITATCDGIMIVDRQGQVCFANPAAAQLFDMTPDALLNYQWGMPL---------- 655 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 +T E + S+ + ++ + S Y + + DI++ KQ L Sbjct: 656 ----------GETTEIELMQSSGIGRTAEMKATPIQWFSKSAYVIALRDITKRKQADLSL 705 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK AE + KS FLA +SHE+RTPL I+GF++V+ P P E + I+ Sbjct: 706 QQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSRD---PAITPEEQENLDIIN 762 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +SGN +L ++ND+LD+SKIE+G +++ L + + Q A K + + + A Sbjct: 763 KSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMFQHKARAKGLQLHLNIA 822 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNE---------- 735 ++P I AD ++Q+ +N+LSNAI FT +G I + + Sbjct: 823 ADVPHYIQADSNKLRQVLINLLSNAIKFTQNGS-INLRVALLKAEGNDHGSDAEDMITPP 881 Query: 736 -------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + V DTGVG+ EL F Q + EGTGLGL +++ Sbjct: 882 SSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTHAGKV-ANEGTGLGLAISR 940 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 V G + S +G+ P++ Sbjct: 941 KFVQLMGGDIQVSSQLNQGSTFSFEIPVH 969 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 78/543 (14%), Positives = 154/543 (28%), Gaps = 63/543 (11%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G L + L + +IG + + + LL++ Y + Sbjct: 75 DGMLLYCNRRLADLLQRNLETVIGSNFKQYLNPVEV---PFFQSLLQKDKAGYSHREFYL 131 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 I +P++L+ P+ + + IV + + +K + E Sbjct: 132 IASDQTEIPVELSVSPLMMEGVKVN----CLIVTDLTENK-RQKKIVAAEKLARSIFEQV 186 Query: 212 KGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 V ++ I P L+ +++ L + + T P TS Sbjct: 187 ADAIVVCDQRGTIIRTSMATQELCGQNPILQPFDQIFPLMFSSSTIREDNHTISSPSPTS 246 Query: 265 EES-----------SLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHP 309 + F + Q+ L N+ + Sbjct: 247 GHPFSIATILNGEIFQGIEVVFGREDGQQFHLLLSGRALLNSKNQIQGCVVTLTNITARK 306 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 E + V PIP ++ G + N ++ LT Y D IA Sbjct: 307 QSEQALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWTELTGYTHQDIPTIADWTQK 366 Query: 369 LLDAPK------------LSDNNAIKPVMLYRSDRTCIAASARLHTIQW--NRENSLAMT 414 + L + + + + + + T Sbjct: 367 AYGTRQGLVQENIDQLYHLDQPIGEGEYTIITRNGSTRIWDFSSAPLGKLSDGRRMVIST 426 Query: 415 FIPFEKANQFPENMPQN-------------GIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + Q + Q ++ E ++++ + ILE Sbjct: 427 ALDVTLRKQAELELQQANATLEVRVEERTKALQQELQTRHQAEQELRASQARFAGILEIA 486 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSL 519 SDGI ++ I+ N+ K+FGY V ++L +P + L + ++ Sbjct: 487 SDGIISVDANQRIILFNQGAEKMFGYRVSEVLGQPLDLLLPNRYTIAHHQHIKTFSHSQG 546 Query: 520 DLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKK 576 R+ E+ G K+ I KL + DI+E KQ + KL ++ Sbjct: 547 KARRMGERQAIFGRRKDGTEFPAEASISKLTLGDQVVFTAFVQDITERKQFEEKLQQSET 606 Query: 577 IAE 579 + Sbjct: 607 RLK 609 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 32/288 (11%), Positives = 78/288 (27%), Gaps = 18/288 (6%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E L ++ V G + + + L ++ + L+ + Sbjct: 174 AAEKLARSIFEQVADAIVVCDQRGTIIRTSMATQELCGQNP--ILQPFDQIFPLMFSSST 231 Query: 376 SDNNAIKPVMLYRSDRTCIA---------ASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + + N + Sbjct: 232 IREDNHTISSPSPTSGHPFSIATILNGEIFQGIEVVFGREDGQQFHLLLSGRALLNSKNQ 291 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + +++ ++ + + + I + +G +L N+A ++L G Sbjct: 292 IQGCVVTLTNITARKQSEQALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWTELTG 351 Query: 487 YPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---R 542 Y +DI +T ++ + ++ LD E T+ Sbjct: 352 YTHQDIPTIADWTQKAYGTRQGLVQENIDQLYHLDQP-IGEGEYTIITRNGSTRIWDFSS 410 Query: 543 IIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + KL + T D++ KQ + +L A E ++ L Sbjct: 411 APLGKLSDGRRMVISTALDVTLRKQAELELQQANATLEVRVEERTKAL 458 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 99/346 (28%), Gaps = 53/346 (15%) Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 +E++ +++ + ++ ++ ++ + + Sbjct: 2 AEKTREELEQELQDLRDRLSVAEETLQAIRQGEVDALVVSGPAGDQIFTLQSADEP--YR 59 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI-----AGGLSTLLDAPKLSD 377 V++ V S G L Y N L + I + L Sbjct: 60 LFVEQMQEGAATVTSDGMLLYCNRRLADLLQRNLETVIGSNFKQYLNPVEVPFFQSLLQK 119 Query: 378 NNAI---KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + A + L SD+T I + + + I Sbjct: 120 DKAGYSHREFYLIASDQTEIPVELSVSPLMMEGVKVNCL-------------------IV 160 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + K+ + E SI E +D I + ++ G I+ T+ A +L G + Sbjct: 161 TDLTENKRQKKIVAAEK-LARSIFEQVADAIVVCDQRGTIIRTSMATQELCGQNP---IL 216 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---------------KITLGSTKEEKLL 539 +PF S +S + + ++ + Sbjct: 217 QPFDQIFPLMFSSSTIREDNHTISSPSPTSGHPFSIATILNGEIFQGIEVVFGREDGQQF 276 Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 L + + L S +T+ +I+ KQ + L +++ + Sbjct: 277 HLLLSGRALLNSKNQIQGCVVTLTNITARKQSEQALQESQERFRRA 322 Score = 39.2 bits (90), Expect = 2.8, Method: Composition-based stats. Identities = 24/247 (9%), Positives = 74/247 (29%), Gaps = 18/247 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KRQNT 142 +DA+ + ++ K G +++G L + + ++ R+ Sbjct: 493 VDANQRIILFNQGAEKMFGYRVSEVLGQPLDLLLPNRYTIAHHQHIKTFSHSQGKARRMG 552 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +GT ++ L + + F F V ++ + Sbjct: 553 ERQAIFGRRKDGTEFPAEASISKLTLGDQ----VVFTAF--VQDITERKQFEEKLQQSET 606 Query: 203 KFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + G V+++ F+ + M ++ + + E Sbjct: 607 RLKTIITATCDGIMIVDRQGQVCFANPAAAQLFDMTPDALLNYQWGMPLGETTEIELMQS 666 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 ++ + + ++K Y L++ +K LS + + + ++ +++ Sbjct: 667 SGIGRTA-----EMKATPIQWFSKSAYVIALRDITKRKQADLSLQQAKADAEAANQAKSM 721 Query: 322 TPETVDK 328 + Sbjct: 722 FLANMSH 728 >gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 792 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/409 (25%), Positives = 196/409 (47%), Gaps = 16/409 (3%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAII 468 ++ + F + + + + + + E E L ++++A D + I Sbjct: 244 GVSFVLVLFAGNKVLVNPHRELETSQKQLAQKNAELMERERESKLLATVVKAARDAVVIT 303 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEK 527 +++G I NRA ++ GY +E + K FL+ T + + L+ L ++ Sbjct: 304 DQKGTIEWVNRAFEEMTGYALESVQGKKPGHFLQGEKTEESTRQRIAKSLAQGLP--IKA 361 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 L + + + I I + + + D++E+K+ +NKL++ + A + Sbjct: 362 EILNYDSQGREYWVDIDITPISDENGNLDRFIAIERDVTEYKRLENKLTNTARDANAANE 421 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ ++G +++++ + + +P + E I SGN ++ I+ND Sbjct: 422 AKSAFLATMSHEIRTPMNGVLGLTQILEKE----ITDPNHREVLQLILSSGNHLVSILND 477 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADL 701 +LDISKIE+ + L P + E +S + Q +EK +L N P + + D Sbjct: 478 ILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCSEKGLLFEV-IDNTPPYTQFIGDE 536 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI LN++ NA+ FT G I+IS V+DTG+G+T L+ + F Sbjct: 537 VRLRQILLNLVGNALKFTQKGS-IVISVEVNVGGMCRFEVKDTGIGITPDRLDSVFEKFE 595 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S + GTGLGL + K++V+ G+ + S +G+ ++ PL Sbjct: 596 QAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGRGSTFTVLLPL 644 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 8/190 (4%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDSE-NTFVFDPIPRTVR-FTWNIDAHGYLKE 97 N + + T Q Q + N ++ E + + + + R D G ++ Sbjct: 252 FAGNKVLVNPHRELETSQKQLAQKNAELMERERESKLLATVVKAARDAVVITDQKGTIEW 311 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTLWPIEGT 155 ++ + G + G + + + I L + + + +G Sbjct: 312 VNRAFEEMTGYALESVQGKKPGHFLQGEKTEESTRQRIAKSLAQGLPIKAEILNYDSQGR 371 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 +V ID+ PI N R I + + +E K Sbjct: 372 EYWVDIDI--TPISDENGNLD--RFIAIERDVTEYKRLENKLTNTARDANAANEAKSAFL 427 Query: 216 SVEKEKYDIF 225 + + Sbjct: 428 ATMSHEIRTP 437 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 35/139 (25%), Gaps = 7/139 (5%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + L V + G + + N +F +T Y G Sbjct: 277 AELMERERESKLLATVVKAARDAVVITDQKGTIEWVNRAFEEMTGYALESVQGKKPG--H 334 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L K ++ + + A + + +++ Sbjct: 335 FLQGEKTEESTRQRIAKSLA---QGLPIKAEILNYDSQGREY-WVDIDITPISDENGNLD 390 Query: 429 PQNGIEPEDVDTRINKRKM 447 IE + + + + K+ Sbjct: 391 RFIAIERDVTEYKRLENKL 409 >gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1548 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 132/631 (20%), Positives = 240/631 (38%), Gaps = 45/631 (7%) Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + + + + L + PL + Sbjct: 352 ATRAPVELTPPEGETLRFATGLGDVHPASLRAYPLLLGERLLGVLELATLGPLPPRAATL 411 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + ++ + + +L + ++ L E + Sbjct: 412 FEDMLPMAALSQEVLERNLHTRSLLDQTRRQATEL-----EESRELLRRSEAFFRAVFET 466 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYK-------SVDDIEIAGGLSTLLDAPKLSDNNA 380 I G + ANP+F ++D L D + Sbjct: 467 AGIGIVSERRGLGIDRANPAFSDFIGISEPELRGRDLEDFFHPDDREALEALLSRLDPDK 526 Query: 381 IKPVMLYRSDRT--------------CIAASARLHTIQWNRE-NSLAMTFIPFEKANQFP 425 ++ + + I A ++ + E + + P Sbjct: 527 LEYAVPRHGNPERDGLDAGEPDQARSTITVRAEHRYLRPDGEVRWADVRCALIGDRDITP 586 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + + + + +++ I+ + D + +++ EG I+ N + +L Sbjct: 587 ---RRVTLINDITELKEQQAELKDTEAWYRGIVHSAPDAMVVVDGEGRIVLCNPQLERLL 643 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRII 544 GY + ++ FL + + L+ L+ E+ +G K+ L L I Sbjct: 644 GYEMGELTGHLVEQFLPEEVRERHVKLRNDFLASPLQVIGHEREVIGVRKDGTRLPLEIS 703 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + KLP S + + DIS K+ + +L AK++AE+ + KSDFLA +SHEIRTP+ Sbjct: 704 LSKLPPSDRHPMSACGALRDISLRKRSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPM 763 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIG + + +PR +Y I SG +L I+ND+LD SKIE+GK+ + Sbjct: 764 NAIIGMAHLALKTEL----DPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENT 819 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719 L+ + +LV A K + A N+P + D + QI +N +NA+ FT Sbjct: 820 EFELETVLDTVANLVSEKAATKGLEFVLDVAANVPPVLRGDPLRLGQILINYANNAVKFT 879 Query: 720 PSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G I + T T + +V+LR VRDTG+G+T+ + + F Q S + GTGL Sbjct: 880 EHGEIVIHVETLETGDTDVLLRFAVRDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGL 939 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GL +AK + D G + S P G+ Sbjct: 940 GLAIAKKLADLMGGGVGVDSVPGGGSTFWFT 970 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 8/144 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYG-- 145 +D G + + +L + +G ++ G + + + + D L G Sbjct: 626 VDGEGRIVLCNPQLERLLGYEMGELTGHLVEQFLPEEVRERHVKLRNDFLASPLQVIGHE 685 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +GT L + I L+ LP R+ G + + A +R + Sbjct: 686 REVIGVRKDGTRLPLEISLSKLPPSDRH----PMSACGALRDISLRKRSEAELRRAKEMA 741 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 +K + + Sbjct: 742 EEATRLKSDFLANMSHEIRTPMNA 765 Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats. Identities = 26/266 (9%), Positives = 62/266 (23%), Gaps = 42/266 (15%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-------------------- 137 + IG ++ G L D + + L Sbjct: 483 ANPAFSDFIGISEPELRGRDLEDFFHPDDREALEALLSRLDPDKLEYAVPRHGNPERDGL 542 Query: 138 --------KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + T + +G D+ I R+ R +++ Sbjct: 543 DAGEPDQARSTITVRAEHRYLRPDGE--VRWADVRCALIGDRD---ITPRRVTLINDITE 597 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + +A K + + + V + I P + ++ LT + Sbjct: 598 LKEQQAELKDTEAWYRGIVHSAPDAMVVVDGEGRIVLCN-PQLERLLGYEMGELTGHLVE 656 Query: 250 KDDVLKTEKYP-------LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFE 301 + + + L + + E+E + + + L + + Sbjct: 657 QFLPEEVRERHVKLRNDFLASPLQVIGHEREVIGVRKDGTRLPLEISLSKLPPSDRHPMS 716 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVD 327 SL + E + Sbjct: 717 ACGALRDISLRKRSEAELRRAKEMAE 742 >gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1067 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 106/640 (16%), Positives = 214/640 (33%), Gaps = 32/640 (5%) Query: 179 RGFGIVHVNRVDNDPRALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 R G + AL + L + +G + + + + Q LR + Sbjct: 11 RAVGAADDSEAQAFIDALAAADVSALPEPLARLAQGLPDLLRRVGETYDQHERDLTLRNR 70 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + S +E + + E ++ + Sbjct: 71 SLELSSSELTKANAKLREESAAQARAITSLRTTANEILDAAGRPPLP--------EDETG 122 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + A F +D+ I G + YAN F ++ Y + Sbjct: 123 LEGLSTLMADLMRERAEFQHNLERQKFALDQHAIVSITDQTGTIIYANEKFCQISGYDAS 182 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + G + + L + + + + Sbjct: 183 ELL----GANHRIVNSGLHPREMFTDMWRTIGNGQVWRGEVCN---SKKDGSLYWVDATI 235 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + GI + + + + +L L+A G+ N Sbjct: 236 VPILDANNRPRQYIGIRTDITARKTMEAALRESEKRLQIALDAGRIGLWSWNTRTDEAFF 295 Query: 478 NRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + + GY ++ + + + L + L E K+ Sbjct: 296 SDQWMAMLGYAANELAACGSTWKALMHPDDCDATYAALEQHLEGATP-VYEAEFRLRHKD 354 Query: 536 EKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + + + + +I++ KQ ++ L A + AE + KS+FLA Sbjct: 355 GSWRWVLASGRVIDRDAEGRAIRIAGVHKEITDRKQVEDMLKEAVERAEAANRAKSEFLA 414 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ IIG + ++ + + + +AN + S +L I+ND+LD SK+ Sbjct: 415 TMSHEIRTPMNGIIGMTGLLLDTQLTR----EQMHFANTVRTSAEALLSIINDILDFSKM 470 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIAL 709 E+G++ + P + + + ++ + + + + + D ++Q+ L Sbjct: 471 EAGRLEFEYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSARGVFYGDAGRLRQVLL 530 Query: 710 NILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N+ NAI FT G I T + + V DTG+G+++ + F Q +S Sbjct: 531 NLAGNAIKFTEIGSVHIGIRAETEFDDMVRLRIEVVDTGIGISDNAKSRLFTMFTQADSS 590 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 R GTGLGL +++ +VD G+ ST +G+ Sbjct: 591 TARRFGGTGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWF 630 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 98/358 (27%), Gaps = 35/358 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 D G + +E+ + G A +++G V+ LH + + W G+ Sbjct: 160 TDQTGTIIYANEKFCQISGYDASELLGANHRIVNSGLHPREMFTDMWRTIGNGQVWRGEV 219 Query: 148 TLWPIEGTNLYVPIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KK 203 +G+ +D +PI R R++ G R A + + + Sbjct: 220 CNSKKDGSLY--WVDATIVPILDANNRPRQYIGIR-----TDITARKTMEAALRESEKRL 272 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYP 260 L + G S + F L + T D Sbjct: 273 QIALDAGRIGLWSWNTRTDEAFFSDQWMAMLGYAANELAACGSTWKALMHPDDCDATYAA 332 Query: 261 LLTSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 L E + P E + + + +++ ++ + + Sbjct: 333 LEQHLEGATPVYEAEFRLRHKDGSWRWVLASGRVIDRDAEGRAIRIAGVHKEITDR--KQ 390 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E++ E V+ AN + FL ++ + G++ LL + Sbjct: 391 VEDMLKEAVE------------RAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQ 438 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L+ + S ++ + L + PFE + Sbjct: 439 LTREQMHFANTVRTSAEALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILA 496 >gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 818 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 108/541 (19%), Positives = 205/541 (37%), Gaps = 21/541 (3%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 L Q +N+ + L + E T+ + Sbjct: 15 RQQLEITRLNQELALAKNSGLPACNGLGDKRDADSHLA--ETVFRLSATISNLNEAVLLE 72 Query: 337 SHGN-LFYANPSFLLLTKY-KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + AN SF + + + ++ + A V + + Sbjct: 73 DENRKIVLANASFCKMFNLKADPQSLVGLDCRGSAEESKFHFKDEAGFVVRIENLLKDRK 132 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 A + + + + F N + + + +I + + + Sbjct: 133 TAVGDVLEL-KDGR----ILNRDFIPINIAGNYIGHLWKYLDITEQKIAQDAIRRREEKY 187 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E + G+ ++ E I+ N++ + G+ +++ N Sbjct: 188 RRIIENMNLGLLEVDTEECIIFANQSFCDITGFLPNELIGVNAAKLFLGNRDEESMKEKR 247 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572 E+ + E + K + + DI+ K+ ++ L Sbjct: 248 ELRKQGISDAYELKIKTKAGDHKWMLISGAPLYDDQKKLTGSIGIHLDITGQKRLESDLI 307 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AKKIAE+ S K FLA +SHEIRTP+ AI+G S ++ N + Y I + Sbjct: 308 EAKKIAEESSRAKEIFLANMSHEIRTPINAILGLSRLLTKT----TQNSQQRTYTEAIIK 363 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S ++ I+ND+LD++KIE+G++ + +L + + + +++ EK + + + Sbjct: 364 SAENLIVIINDILDLTKIEAGQIQIENIEFNLADLIKQLEGVLRYKTEEKGLEFDATTSV 423 Query: 693 NIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVG 747 ++P + + D + Q+ LN++ NAI FT GG I + E+ V+DTGVG Sbjct: 424 HVPPVLMGDPYRINQVLLNLVGNAIKFTEKGG-IEVWCKLVDQQKDVNEIQFTVKDTGVG 482 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 M L+ F Q S + GTGLGL +++ +V+ GK ++ ST GT+I Sbjct: 483 MEPEYLKHIFTNFSQEDASITRKHGGTGLGLSISRQLVELMGGKIHVESTKGLGTVISFT 542 Query: 808 F 808 Sbjct: 543 L 543 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 42/140 (30%), Gaps = 7/140 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG 145 +D + ++ G ++IG+ + + + D +L K+ + Sbjct: 200 EVDTEECIIFANQSFCDITGFLPNELIGVNAAKL-FLGNRDEESMKEKRELRKQGISDAY 258 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + G + + ++ P+Y ++ +G G + + K Sbjct: 259 ELKIKTKAGD--HKWMLISGAPLYDDQKKLTGSIGIHL--DITGQKRLESDLIEAKKIAE 314 Query: 206 HLHEIKKGHSSVEKEKYDIF 225 K+ + + Sbjct: 315 ESSRAKEIFLANMSHEIRTP 334 >gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1116 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 112/655 (17%), Positives = 232/655 (35%), Gaps = 51/655 (7%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 H + + + ++ +I+ P + L+ Sbjct: 328 HAEDSLKESQKALLEAQNIAQVGNWTWTIETNTLSWTDEIYRIFGLIPQETPPTYQAFLS 387 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + ++ L + + N + T + ++ F + Sbjct: 388 AIHPEDRLFVQNAVNQALEQLNTPYQVEHRIIRPNGDLRTVVELGRVERDQQGTPFRMIG 447 Query: 305 HRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLL 350 + + E D +++ + N ++ Sbjct: 448 TVQDITARKQTEALLLSSEIRFRSLFDSMNEGGALHAMVFNEHGNPIDYRILEVNKAYTE 507 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + ++ + + Sbjct: 508 ILGITKEQAEGRL--ATEIYGQTSPP---YLELYNRVVKTGQSLRFETEYSPM------- 555 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSD 463 FE + P + + + + + ++E + L S+++ D Sbjct: 556 ----VRNFEISVFSPGENQFATVFTDITERKKTLQKLNGALDELEKKSNFLQSLVQNLPD 611 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I + + EG+ L+ N A + G + I K F++Q + Sbjct: 612 LIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMNDLLAIEKGGP- 670 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + + L + HDI+ KQ + L HAK+ AE Sbjct: 671 VINQEWVTFAADGHKALLETTKTPMFDKQGRIIGVLGVAHDITATKQAEQDLIHAKEKAE 730 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 KS+FLA +SHEIRTP+ IIG S+++ + ++ + ++ +LD Sbjct: 731 AAYQAKSEFLATMSHEIRTPMNVIIGLSDILMETPI----DHEQRDHLLRLQKANKTLLD 786 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--ANNIPRI 697 +V+ +LD+S+IE+ +++L EP++L V E +S++ + A++K + + + A + Sbjct: 787 LVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGLRLESQVTQATDDYWS 846 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 L D ++QI +N++ NA+ FT G + + T V L V+DTG+G+ LE Sbjct: 847 LGDESRIRQILVNLIGNAVKFTEKGSIWVTLELFTDTLERTLVRLCVKDTGIGIGPEHLE 906 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q+ +S R GTGLGL + + ++ GK ++ S P++G+L + P Sbjct: 907 TIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPSQGSLFCVELP 961 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 39/143 (27%), Gaps = 6/143 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTW 143 W D G + + +G+ ++ G D D D + +++ Sbjct: 612 LIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMNDLLAIEKGGPV 671 Query: 144 YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G ++ P++ + G G + H + Sbjct: 672 INQEWVTFAADGH--KALLETTKTPMFDKQGRIIGVLG--VAHDITATKQAEQDLIHAKE 727 Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225 K ++ K + + Sbjct: 728 KAEAAYQAKSEFLATMSHEIRTP 750 Score = 42.3 bits (98), Expect = 0.36, Method: Composition-based stats. Identities = 39/386 (10%), Positives = 104/386 (26%), Gaps = 46/386 (11%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + E+++ + +G + G ++ ++K + +T P+ Sbjct: 497 RILEVNKAYTEILGITKEQAEGRLATEIYGQTSPPYLELYNRVVKTGQSLRFETEYSPMV 556 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRA----LGKRLDKK---FS 205 N + + G F V L+KK Sbjct: 557 -RNFEISVFS------------PGENQFATVFTDITERKKTLQKLNGALDELEKKSNFLQ 603 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L + ++ + + + ++ T+Y + + L Sbjct: 604 SLVQNLPDLIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMNDLL 663 Query: 264 SEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E P + ++ + + + L + + + ++ Sbjct: 664 AIEKGGPVINQEWVTFAADGHKALLETTKTPMFDKQGRIIGVLGVAHDITATKQAEQDLI 723 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E + + A FL ++ + + GLS +L + Sbjct: 724 HAKEKAEAA------------YQAKSEFLATMSHEIRTPMNVIIGLSDILMETPIDHEQR 771 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + L ++++T + + + N +++ P A E M I + Sbjct: 772 DHLLRLQKANKTLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGL 831 Query: 441 RINKRKMEIE--------VMQLCSIL 458 R+ + + ++ IL Sbjct: 832 RLESQVTQATDDYWSLGDESRIRQIL 857 >gi|239908790|ref|YP_002955532.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239798657|dbj|BAH77646.1| sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 979 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 128/763 (16%), Positives = 246/763 (32%), Gaps = 55/763 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D L S EL K G+ + + + + + + Sbjct: 228 DNRSRLLAHSAELGKMAGHPGENATLESVLSRAFPEASVALSMLQRQVFSGALKVEREVR 287 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + GT Y ++ PI + ++ + + +F L Sbjct: 288 FETNGTPRYW--HISMFPIARDDANHP-LLICTLIQDISERKQAEEALRASESQFKSLFS 344 Query: 210 IKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-YAHKDDVLKTEKYPLLTSEES 267 + +K+ +I + + V L + + E + Sbjct: 345 QSPISNLIHDKDSGEIIDANTAAFVSYGYSSVEELKAGKFWLERPYSLEEALAWIRKAAD 404 Query: 268 SLPEQEDF--HTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 P++ ++ + + + + + + + L + Sbjct: 405 QGPQRFEWLSRRVTGELFWEHVHLSPVVINGVERILASGIDITERKRLEMRLADQLAFKQ 464 Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +D P F N ++ K D I L A Sbjct: 465 ALMDTIPYAVFYKDAETRFMGCNIAYEETFGIKREDFIGKRVLDLEYLPEQDRHIYQAED 524 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + I + + G+ + D + Sbjct: 525 EATIA----SVGYVRKEM-AIPFVDGLIHQTLYSVNGFRQADGTPGGIIGVIVDISDLKR 579 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + + SI+E D + +G ++ + + K GY D + Sbjct: 580 AGVALRESEARYRSIIENIQDMYYRTDVQGRLVLLSPSTPKQLGYDSVDEVLGCLASDF- 638 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558 P + L I + + + L K+ K L + Sbjct: 639 WMQPELRQELLLRIKTEGV--VKDYEVLLKAKDGKPLLVSATSAYYHDDEGNVLGVEGIF 696 Query: 559 HDISEWKQEKNKLSHAKKIAEKE------------------SSHKSDFLARVSHEIRTPL 600 DI+E K+ + L ++ E+ + KS FL VSH++RTPL Sbjct: 697 RDITERKRGEEALKKSRDELEERVAERTRELTEANARLTELDNLKSAFLNTVSHDLRTPL 756 Query: 601 TAIIGFSEVIKNQ---RFGPLGN---------PRYIEYANYIDRSGNLVLDIVNDLLDIS 648 T+I+GFS++I+ RF PL + ++ I G + +V+D LD+S Sbjct: 757 TSILGFSKIIQRDFTRRFLPLAEGDSVLRNKASKILDNLGVIVSEGERLTRLVSDFLDLS 816 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQI 707 +IE G+ + L + A+S ++ + + IR +++P + D + Q+ Sbjct: 817 RIEDGRYVWKDKTTDLGVLIRGAVSSMKGALLQKHGVQIRVDADSHLPALWVDPDRIAQV 876 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+LSNAI FT G + + T S + + V DTG+G+ EL F Q+ + Sbjct: 877 LTNLLSNAIKFTSEG-TVTL-TARASTGSIRVSVADTGMGIPPDELPMIFDKFYQVGDDT 934 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +GTGLGL + K +V+ G ++ ST G++ PL Sbjct: 935 LVAEKGTGLGLAICKQIVEHYDGAIWVESTQGVGSVFFFELPL 977 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 43/278 (15%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL IL G+AI + +L+ + + K+ G+P E+ + ++ Sbjct: 212 QLQGILGHAPIGVAICDNRSRLLAHSAELGKMAGHPGENATLESVLSRAFPEASVALSML 271 Query: 513 LTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK 568 ++ S L+ +E+ T + + + ++ + DISE KQ + Sbjct: 272 QRQVFSGALK--VEREVRFETNGTPRYWHISMFPIARDDANHPLLICTLIQDISERKQAE 329 Query: 569 NKLSHAKKIAEKESSHKSDF----LARVSH-----EI---RTPLTAIIGFS--EVIKNQR 614 L ++ S KS F ++ + H EI T G+S E +K + Sbjct: 330 EALRASE------SQFKSLFSQSPISNLIHDKDSGEIIDANTAAFVSYGYSSVEELKAGK 383 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEA 671 F E +I ++ + +S+ +G++ ++H PV ++ V Sbjct: 384 FWLERPYSLEEALAWIRKAADQGPQ---RFEWLSRRVTGELFWEHVHLSPVVING-VERI 439 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 ++ KR+ +R AD + KQ + Sbjct: 440 LASGIDITERKRLEMRL----------ADQLAFKQALM 467 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 26/278 (9%), Positives = 65/278 (23%), Gaps = 14/278 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNT 142 + DA + +T G IG R+ D+ + D + + Sbjct: 474 VFYKDAETRFMGCNIAYEETFGIKREDFIGKRVLDLEYLPEQDRHIYQAEDEATIASVGY 533 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + ++G + + G G + + + Sbjct: 534 VRKEMAIPFVDGLIHQTLYSVNG--FRQADGTPGGIIGVIV--DISDLKRAGVALRESEA 589 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 ++ + E + + + P + V + A + + LL Sbjct: 590 RYRSIIENIQDMYYRTDVQGRLVLLSPSTPKQLGYDSVDEVLGCLASDFWMQPELRQELL 649 Query: 263 ---TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 +E + + ++ + +E Sbjct: 650 LRIKTEGVVKDYEVLLKAKDGKPLLVSATSAYYHDDEGNVLGVEGIFRDITERKRGEEAL 709 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + + +++ L AN L KS Sbjct: 710 KKSRDELEER----VAERTRELTEANARLTELDNLKSA 743 >gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1099 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 114/672 (16%), Positives = 226/672 (33%), Gaps = 36/672 (5%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + R S + R N ++ + + + + S Sbjct: 43 HDKERRLSDRSARLMEEELRAANQ--ESRRQAKAHLQAILNTVGEGIVIADQTGTVVSVN 100 Query: 229 SPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + + + + + + Sbjct: 101 PALLSIFGYERDEVIGNNIDMLIPLAALKAAGSSGMERIFDLGRESMALRRGGTSFPIEL 160 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYA 344 T +++ + E E + F+ Sbjct: 161 AAGDLTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGF 220 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + F T+ + + D D + ++ + Sbjct: 221 SGQFTEHTRALP------SHYVGHTRDEMISDDTPMEARLQNLADMEARRPFRDFVYHTK 274 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLC----SI 457 + + E G + + ++ + E+ +L SI Sbjct: 275 NMDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSI 334 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 LE+ DGI I+ G NRA +KL + +++ + + + L +IL Sbjct: 335 LESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETA--ESLYQIL 392 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574 + ++ L + I + L DI++ + + +L A Sbjct: 393 LRLADSIRDDTASFKRRDGSPLPVEYIASPVMDKGNQVGVVLGFRDITQRRLVERQLREA 452 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE + KS+FLA +SHEIRTP+ +IG + ++ + + +A I SG Sbjct: 453 KEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKL----TEEQRHFAETIRDSG 508 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD SK+E+GK++L + L V + ++ A+ K I I + + Sbjct: 509 ESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRL 568 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTN 750 + +D ++Q+ +N+ NA+ FT GG I ++ + V VRDTG+G+ Sbjct: 569 RMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQPMVHFDVRDTGIGIPP 628 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q+ S R GTGLGL + + + + G+ + S P KG+ + P+ Sbjct: 629 EAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWMSVPM 688 Query: 811 Y----DTSHPHD 818 ++ P D Sbjct: 689 ELLAPQSAAPPD 700 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 78/194 (40%), Gaps = 11/194 (5%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E L + +E+ ++ ++ E+ N+ L +IL +GI I Sbjct: 30 ETLLRLISDSYEEHDKERRLSDRSARLMEEELRAANQESRRQAKAHLQAILNTVGEGIVI 89 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE- 526 ++ G ++S N A+ +FGY ++++ + + L S + + + Sbjct: 90 ADQTGTVVSVNPALLSIFGYERDEVIGNNIDMLIP-------LAALKAAGSSGMERIFDL 142 Query: 527 -KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + ++ + + + L + + + M DISE K+ + +++ +++ + Sbjct: 143 GRESMALRRGGTSFPIELAAGDLTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFAQ 202 Query: 584 HKSDFLARVSHEIR 597 SD+ + ++R Sbjct: 203 STSDWFWEMGPDLR 216 Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 41/381 (10%), Positives = 111/381 (29%), Gaps = 35/381 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + ++ L G ++IG + + + + G ++R ++ Sbjct: 91 DQTGTVVSVNPALLSIFGYERDEVIGNNIDMLIPLAALKAAGSSG--MERIFDLGRESMA 148 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLH 208 GT+ PI+LAA + +G F ++ +++F Sbjct: 149 LRRGGTSF--PIELAA-----GDLTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFA 201 Query: 209 EIKKGHSSVEKEKYDI--FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + FS Q + + T DD + L E Sbjct: 202 QSTSDWFWEMGPDLRFTGFSGQFTEHTRALPSHYVGHTRDEMISDDTPMEARLQNLADME 261 Query: 267 SSLPEQEDFHT---INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + P ++ + ++ + + + S E Y + + + + Sbjct: 262 ARRPFRDFVYHTKNMDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQ 321 Query: 324 ETVDKCPI------------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 +++ + +G + N + L ++ + + L Sbjct: 322 AEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILP---LM 378 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 A + ++ ++L +D + + + + L + +I ++ + Sbjct: 379 ALDMETAESLYQILLRLAD----SIRDDTASFKRRDGSPLPVEYIASPVMDK-GNQVGVV 433 Query: 432 GIEPEDVDTRINKRKMEIEVM 452 + R+ +R++ Sbjct: 434 LGFRDITQRRLVERQLREAKE 454 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 40/414 (9%), Positives = 98/414 (23%), Gaps = 36/414 (8%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 +SE F D T + W + S + + +G ++ Sbjct: 187 EREMAESEERFR-DFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRALPSHYVGHTRDEMIS 245 Query: 124 ILHIDPNNHIGDL-LKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 ++ + + ++G ++ + P++ + EF G+RG Sbjct: 246 DDTPMEARLQNLADMEARRPFRDFVYHTKNMDGPGRFLRV--NGKPVFDPSGEFKGYRG- 302 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKV 240 + + K + L E + R K+ Sbjct: 303 -TASDITEEIEAADRLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKL 361 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSE---------ESSLPEQEDFHTINLNQYTKKQYFGT 291 D+L + T+E S+ + +Y + Sbjct: 362 LDFEPAELVGSDILPLMALDMETAESLYQILLRLADSIRDDTASFKRRDGSPLPVEYIAS 421 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351 + + + + E + FL Sbjct: 422 PVMDKGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGN------------RTKSEFLAT 469 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN----- 406 ++ + G++ LL KL++ + S + + + Sbjct: 470 MSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKL 529 Query: 407 --RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + GIE + + + + +L +L Sbjct: 530 DLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVL 583 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 23/247 (9%), Positives = 66/247 (26%), Gaps = 11/247 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID +G ++ K + +++G + + + + LL+ ++ T Sbjct: 345 IDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETAESLYQILLRLADSIRDDTA 404 Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ +P++ A P+ + + GF + + Sbjct: 405 SFKRRDGSP--LPVEYIASPVMDKGNQVGVVLGF---RDITQRRLVERQLREAKEAAEAG 459 Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + K + + + ++ + E + L T +L Sbjct: 460 NRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVINDIL 519 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + +T + L + ++ P L Sbjct: 520 DFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRL 579 Query: 323 PETVDKC 329 + + Sbjct: 580 RQVLMNL 586 >gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1599 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 116/746 (15%), Positives = 247/746 (33%), Gaps = 57/746 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W +D ++ + G + +++ D +L + + Sbjct: 571 IWVMDHDQKPLLVNSYFKENTGLGTDSVSLTS-DELAACKKSDD-----MVLNGHDPCHF 624 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +G + AL + G G G+ K Sbjct: 625 EEGVTFKDGRKHMLQTIKTALA--GGDGRIKGVLGIGV--DITERKRLEQELKEQVNILE 680 Query: 206 HLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + +++ + +++ + ++V + + E Sbjct: 681 AIINGIPDILAIQYPDHSIERYNKTGYQVLNKTPDEVRGKKCFELIGKERECEECATRTA 740 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----E 319 L + E + I + + E + + + +E E Sbjct: 741 LRTKELAQLEKY--IPELDIYLNCRSVPIVDEHGEVVKIVEQLRDITSRKLAEEALKKSE 798 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V+ + G Y N + + K + + ++ Sbjct: 799 ERYRSLVESQHDAIARIDREGLFTYVNDTCCRIFGKKREELLGSP------FIPYVHEED 852 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 L + + + + M + + + + + + Sbjct: 853 MEYLLTNLEKVHQHPHRVQIAHRLVTPSG--FYWMHWENSAIFSDSGDIVEIQSVGRDIT 910 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGI-ILSTNRAVSKLFGYPVEDI 492 + ++ ++K+E+ IL+A + ++ +++ I + + GY E++ Sbjct: 911 EMKLQQQKLEL-------ILKAAQNVSFVLTEPANDQQDHLIRDFSPGAENILGYNKEEV 963 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPF 550 L K + + + + Q K + + L Sbjct: 964 LGKSVFMLHSEENFEKVPEIHAAVARN---QPWHGRVWLVRKSGEKYPALFTVYPFNLYS 1020 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DISE ++ + +L AK+ AE + KS FLA +SHEIRTPLT I+G E++ Sbjct: 1021 RMGMLGVSIDISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEML 1080 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ + + + S + I++D+LD+SK+E+G+M L L + Sbjct: 1081 ASE----ISSENGRRIMDMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDR 1136 Query: 671 AISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 L A K + + S + +L D ++QI N++ NA+ FT S GQ+ + Sbjct: 1137 VQGLYAAQAENKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFT-SHGQVTLRA 1195 Query: 730 THTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +++ V V+DTG G+ +L + F Q +S + +GTGLGL + + Sbjct: 1196 RPADSQDGSSKQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQ 1255 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + G + S P +G+ P Sbjct: 1256 LTRLMGGNINVESAPGEGSTFVAEIP 1281 Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats. Identities = 61/543 (11%), Positives = 152/543 (27%), Gaps = 68/543 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLL-KRQNT 142 + G L ++ L + G + + + + D++ L+ D ++ LL +++ Sbjct: 30 IYTSTPEGRLLSVNPALARMFGYDSPQDMMESVTDIASQLYADADDREKFKRLLSEKEEL 89 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 K + +GT A + ++ ++ F V K+ ++ Sbjct: 90 VNYKCRMRRRDGTIF--WTSKNAKAVRDKDGNVGNYQVF--VTDISDRKQAEEELKKKER 145 Query: 203 KFSHLHEIKKGHSSVEK----------------EKYDIFSQQSPPPHLRMKNKVSSLTEY 246 K+ L E + + +++P + N V + Sbjct: 146 KYRQLFEASPISLWEQDFSQVKKRIDSLKAQGIPDLRAYLRENPDLVKELANLVKVVDVN 205 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-------------------- 286 + K + + E + + Sbjct: 206 QVTLRRYHASSKEEFFSGITTVFSEASIEGFLEAPIAIAEGRQELFVENKHLTLDGKPLE 265 Query: 287 ------QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339 G + S + A E E V+ + + G Sbjct: 266 VQVHWSVAPGHEETYSSVLVCIVDTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDG 325 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + N S + Y + ++ L D + + + Sbjct: 326 YTTFVNNSMAEMLGYSVQEMLDR-----HLFDFMDEQAVSIARKNLERCRHGVREQLEFE 380 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 I + + +Q + + ++++ + + + + LE Sbjct: 381 F--IHKDGRRIYTLLASS-PIFDQDGNFTGYLAGVQDITKRKQAEKELMFQNILMKTQLE 437 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVMNHYLT 514 A+ DGI +++ I+S N+ ++L+ P + + L+ P + Sbjct: 438 ASPDGIMVVDENDKIISFNQRFAELWELPDSIMSSQSADKALKHVLSKLAYPDEFVRRIH 497 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572 E+ + ++ E+I L + K+ P DI++ K+ ++ L Sbjct: 498 ELCNNKTEESCEEIVL---ADGKIFERYSSPISGPSGDYYGRVWYYRDITDRKKAESALR 554 Query: 573 HAK 575 + Sbjct: 555 ENQ 557 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 70/522 (13%), Positives = 148/522 (28%), Gaps = 39/522 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W ID GY ++ + + +G +M+ L D D + + + Sbjct: 318 VWQIDKDGYTTFVNNSMAEMLGYSVQEMLDRHLFDFMDEQAVSIARKNLERCRHGVREQL 377 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G + LA+ PI+ ++ F+G+ V + Sbjct: 378 EFEFIHKDGR--RIYTLLASSPIFDQDGNFTGY--LAGVQDITKRKQAEKELMFQNILMK 433 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLK 255 E V E I S L + +K D Sbjct: 434 TQLEASPDGIMVVDENDKIISFNQRFAELWELPDSIMSSQSADKALKHVLSKLAYPDEFV 493 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + L ++ E+ + + G + + Y + + Sbjct: 494 RRIHELCNNKTEESCEEIVLADGKIFERYSSPISGPSGDYYGRVWYYRDITDRKKAESAL 553 Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E + L D PI +V H N F T + S L + + Sbjct: 554 RENQYLLSTIFDNAPIGIWVMDHDQKPLLVNSYFKENTGLGTD---------SVSLTSDE 604 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L+ ++L D + I A GI Sbjct: 605 LAACKKSDDMVLNGHDPCHFEEGVTF-----KDGRKHMLQTIKTALAGGDGRIKGVLGIG 659 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + +++++ +V L +I+ D +AI + I N+ ++ +++ Sbjct: 660 VDITERKRLEQELKEQVNILEAIINGIPDILAIQYPDHSIERYNKTGYQVLNKTPDEVRG 719 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 K + + T + + +L Q + I + L + Sbjct: 720 KKCFELIGKERECEECATRTALRTKELAQLEKYIPELD------IYLNCRSVPIVDEHGE 773 Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + DI+ K + L +++ + D +AR+ Sbjct: 774 VVKIVEQLRDITSRKLAEEALKKSEERYRSLVESQHDAIARI 815 Score = 115 bits (289), Expect = 3e-23, Method: Composition-based stats. Identities = 43/413 (10%), Positives = 117/413 (28%), Gaps = 53/413 (12%) Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 SV +F SP + ++S A + K LL+ +E + + Sbjct: 38 RLLSVNPALARMFGYDSPQDMMESVTDIASQLYADADDREKFKR----LLSEKEELVNYK 93 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDK 328 + + + +++ Y + + E + + Sbjct: 94 CRMRRRDGTIFWTSKNAKAVRDKDGNVGNYQVFVTDISDRKQAEEELKKKERKYRQLFEA 153 Query: 329 CPIPFFVYSHGNL-----------------------------------FYANPSFLLLTK 353 PI + + N L Sbjct: 154 SPISLWEQDFSQVKKRIDSLKAQGIPDLRAYLRENPDLVKELANLVKVVDVNQVTLRRYH 213 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 S ++ G++T+ + + ++ + + + L + Sbjct: 214 ASSKEEF--FSGITTVFSEASI---EGFLEAPIAIAEGRQELF-VENKHLTLDGKP-LEV 266 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + + + ++ + ++E ++G+ I+++G Sbjct: 267 QVHWSVAPGHEETYSSVLVCIVDTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDGY 326 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 N +++++ GY V+++L + F+++ S+ L +R+ LE + Sbjct: 327 TTFVNNSMAEMLGYSVQEMLDRHLFDFMDEQAVSIARKNLERCR-HGVREQLEFEFIHKD 385 Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L + Y + DI++ KQ + +L + + + Sbjct: 386 GRRIYTLLASSPIFDQDGNFTGYLAGVQDITKRKQAEKELMFQNILMKTQLEA 438 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 55/484 (11%), Positives = 129/484 (26%), Gaps = 31/484 (6%) Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 + S ++ I + + + + ++G L V + + P + Sbjct: 228 FSEASIEGFLEAPIAIA---EGRQELFVENKHLTLDGKPLEVQVHWSVAPGHEET----- 279 Query: 178 FRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHE-IKKGHSSVEKEKYDIFSQQS-PPPHL 234 + + + A K ++K+ L E + +G ++K+ Y F S Sbjct: 280 YSSVLVCIVDTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDGYTTFVNNSMAEMLG 339 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQ 293 ++ + + + + L + E +F + + + Sbjct: 340 YSVQEMLDRHLFDFMDEQAVSIARKNLERCRHGVREQLEFEFIHKDGRRIYTLLASSPIF 399 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPET----VDKCPIPFFVYSH-GNLFYANPSF 348 + YL+ + ++ ++ P V + N F Sbjct: 400 DQDGNFTGYLAGVQDITKRKQAEKELMFQNILMKTQLEASPDGIMVVDENDKIISFNQRF 459 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L + D I + L LS + + I Sbjct: 460 AELWELP--DSIMSSQSADKAL-KHVLSKLAYPDEFVRRIHELCNNKTEESCEEIVLADG 516 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 P + + + + D + + + L +I + GI ++ Sbjct: 517 KIFERYSSPISGPS--GDYYGRVWYYRDITDRKKAESALRENQYLLSTIFDNAPIGIWVM 574 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + + L N + G + + L + + +L+ E+ Sbjct: 575 DHDQKPLLVNSYFKENTGLGTDSVS-------LTSDELAACKKSDDMVLNGHDPCHFEEG 627 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + +L DI+E K+ + +L I E + Sbjct: 628 VTFKDGRKHMLQTIKTALAGGDGRIKGVLGIGVDITERKRLEQELKEQVNILEAIINGIP 687 Query: 587 DFLA 590 D LA Sbjct: 688 DILA 691 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 29/371 (7%), Positives = 101/371 (27%), Gaps = 55/371 (14%) Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDN 378 + + + PI + G L NP+ + Y S D+ + S L + Sbjct: 19 SHDILMNAPIGIYTSTPEGRLLSVNPALARMFGYDSPQDMMESVTDIASQLYADADDREK 78 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 R ++ + ++ + Sbjct: 79 -------FKRLLSEKEELVNYKCRMRRRDGTIFWTSKNAKAVRDKDGNVGNYQVFVTDIS 131 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIIN----------------REGI--------- 473 D + + +++ + + + EA+ + + + Sbjct: 132 DRKQAEEELKKKERKYRQLFEASPISLWEQDFSQVKKRIDSLKAQGIPDLRAYLRENPDL 191 Query: 474 ---------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 ++ N+ + + ++ T + + I Sbjct: 192 VKELANLVKVVDVNQVTLRRYHASSKEEFFSGITTVFSEASIEGFLEAPIAIAEGRQELF 251 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 +E L + + + + S + + D +E K+ + L +++ Sbjct: 252 VENKHLTLDGKPLEVQVHWSVAPGHEETYSSVLVCIVDTTELKEAEATLKESEEKYRLLV 311 Query: 583 SHKSDFLARVSHE-----IRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 + ++ + ++ + + + ++G+S + + ++ + + + ++ Sbjct: 312 ENLNEGVWQIDKDGYTTFVNNSMAEMLGYSVQEMLDRHLFDFMDEQA---VSIARKNLER 368 Query: 637 VLDIVNDLLDI 647 V + L+ Sbjct: 369 CRHGVREQLEF 379 >gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01] Length = 1238 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 116/517 (22%), Positives = 217/517 (41%), Gaps = 46/517 (8%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 +++ E E V++ P+ + G + AN S L ++ + L Sbjct: 346 EKIASELQEREERFRLLVERLPVATLLCDDKGRIEMANRSAAELFDC-PINALPGETVLR 404 Query: 368 TL----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L M+ I S L+ + Sbjct: 405 VLPNIESPKDLHEQLAESDERMVRTLRGESIPVSISLNPLH------------------- 445 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E + ++ + + ++EA+ + I +++ G I NR Sbjct: 446 --EGSSYLINLVDLRARKVAE-------ERFRLVVEASPNAILLVDGLGRIAMVNRQTEV 496 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDLRQTLEKITLGSTKEEKLLSL 541 LFGY + +L +P + L + + R + G +E +++ L Sbjct: 497 LFGYERQMLLGEPVEMLLPAAQRGSHVALRRGYQAMPEQRRMGGNRELFGLHREGRMIPL 556 Query: 542 RI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + + DISE K + KL + + +KS+FLA +SHE+RTP Sbjct: 557 EVGLSPIRSGDENLVQAVIIDISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTP 616 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L +I+ S+ ++ G L + ++A+ + R+G+ +L ++ND+LD++K+ESG+M L Sbjct: 617 LNSILILSDQLRQNLAGNLT-EKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKL 675 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHF 718 EP+++ + + E + ++ A K + + T +PRI D + QI N+LSNA+ F Sbjct: 676 EPINMQDVLVELDASLRPMAELKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKF 735 Query: 719 TPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 T G + +S + +E + VRD+G+G+ + E+ + F Q+ S R G Sbjct: 736 TDHG-DVTLSVSSQGRQEDERELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGG 794 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL + + +V A G + S P G+ + P+ Sbjct: 795 TGLGLAITRQLVLALDGDISLQSAPGLGSTFTVRLPV 831 Score = 40.0 bits (92), Expect = 1.7, Method: Composition-based stats. Identities = 18/242 (7%), Positives = 62/242 (25%), Gaps = 11/242 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LL--KRQNTW 143 +D G + ++ + G ++G + + + + + +R+ Sbjct: 481 VDGLGRIAMVNRQTEVLFGYERQMLLGEPVEMLLPAAQRGSHVALRRGYQAMPEQRRMGG 540 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + EG +P+++ PI S + ++ + ++ Sbjct: 541 NRELFGLHREGR--MIPLEVGLSPIRSGDENLVQA----VIIDISERKAAEQKLREQAEQ 594 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K + + +++ ++ K + L Sbjct: 595 LLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAGNLTEKQTKHADIVHRAGSDLL 654 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + + + + S ++ L + G Sbjct: 655 QLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRPMAELKGLRLHTQLEAGVPRII 714 Query: 324 ET 325 T Sbjct: 715 HT 716 Score = 37.7 bits (86), Expect = 9.0, Method: Composition-based stats. Identities = 18/239 (7%), Positives = 63/239 (26%), Gaps = 13/239 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G ++ + + + G + V +I+ + + L + + Sbjct: 374 DDKGRIEMANRSAAELFDCPINALPGETVLRVLP--NIESPKDLHEQLA----ESDERMV 427 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + G + +P+ ++ P++ + + +V + L L + Sbjct: 428 RTLRGES--IPVSISLNPLHEGSSYLINLV---DLRARKVAEERFRLVVEASPNAILLVD 482 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + V ++ +F + + + +H L+ + Sbjct: 483 GLGRIAMVNRQTEVLFGYERQMLLGEPVEMLLPAAQRGSHV--ALRRGYQAMPEQRRMGG 540 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + +++ + + + +A E + Sbjct: 541 NRELFGLHREGRMIPLEVGLSPIRSGDENLVQAVIIDISERKAAEQKLREQAEQLLLAN 599 >gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator [Cellvibrio japonicus Ueda107] Length = 1232 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 123/654 (18%), Positives = 250/654 (38%), Gaps = 41/654 (6%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPH 233 G ++ ++ N RL + + ++ +F Sbjct: 271 GNLVLRYRQLYNQLLNSESRLRAIVDTAVDGIITIDSQGKILAMNNAAEQLFGWTPAEIE 330 Query: 234 LRMKNKVSSLTEYYAHKD---DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 R + + H + KT ++ + + +D I + K Sbjct: 331 QRNIKMLMPEPYHSEHDSYLHNYAKTGNARIIGTGREVVALHKDGRQIPVRLAVGKAE-- 388 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347 L + S+ E + P F + + N+ + + + Sbjct: 389 -LPGQTLFVGFVSDISVRKSMERELRTREQQYRTLISNIPGIAFRSHLVAPWNMIFISDA 447 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 +T + + D + + LL ++ NA L R + + I + Sbjct: 448 VQRVTGWPASDFMSGHVTMGDLLHPDDVARINAQVTDALSRK----RSYTCEYRVIHRDG 503 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT--SDGI 465 ++ ++ + +G+ + +++ + ++EA + + Sbjct: 504 SE-HWVSETASGVYDETGTPIWIDGVIMDITESKR-------RAHEFEGVVEAIGRASAV 555 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 A + +G I+ N KL GY ++L + + + Y L+ Sbjct: 556 AEFDMDGTIIGVNENFLKLTGYHKNELLGRHHRILCMPE-EAASEDYQQFWQDLNRGIFR 614 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E + ++ I + D+SE K + L AK+ AE+ Sbjct: 615 SGEFCYIDCNENPIWVQAIYTPIFDVDGKPWKIFTIASDLSERKAMEQDLVAAKERAEQA 674 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K FLA +SHEIRTP+ AIIGF+E++ + P+ +++ + +S +L ++ Sbjct: 675 SIAKGMFLANMSHEIRTPMNAIIGFTELLLDSALDPV----QLKHMQTVRQSARSLLGLL 730 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LD +K+E G + L SL + + ++ +Q+ A++K + + + + P ++L D Sbjct: 731 NDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQADKKGLGLHLDYVHTTPDQVLGD 790 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ +N+L NAI FT +G ++ +S V ++V+DTG+G+ +E PF Sbjct: 791 ELRIRQVLVNLLGNAIKFTLTG-EVRLSVDVLGEG-VRMQVQDTGIGIAVERIEHIFTPF 848 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q S R GTGLG +A+ + + GK + S +G+ + PL + Sbjct: 849 TQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVEGQGSCFVVWLPLEAAA 902 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 42/458 (9%), Positives = 120/458 (26%), Gaps = 33/458 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144 ID+ G + ++ + G ++ + + + ++ + Sbjct: 305 IDSQGKILAMNNAAEQLFGWTPAEIEQRNIKMLMPEPYHSEHDSYLHNYAKTGNARIIGT 364 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202 + +G + V + + E G F G V V + ++ Sbjct: 365 GREVVALHKDGRQIPVRLAVGKA-------ELPGQTLFVGFVSDISVRKSMERELRTREQ 417 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--------LTEYYAHKDDVL 254 ++ L G + R+ +S + + D Sbjct: 418 QYRTLISNIPGIAFRSHLVAPWNMIFISDAVQRVTGWPASDFMSGHVTMGDLLHPDDVAR 477 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + S + S + + +++ + + + + + S Sbjct: 478 INAQVTDALSRKRSYTCEYRVIHRDGSEHWVSETASGVYDETGTPIWIDGVIMDITESKR 537 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E + + G + N +FL LT Y + + +L P+ Sbjct: 538 RAHEFEGVVEAIGRASAVAEFDMDGTIIGVNENFLKLTGYHKNELLGR---HHRILCMPE 594 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + EN + + I + + I Sbjct: 595 EAASEDYQQFWQDLNRGIFRSGEFCYIDC---NENPIWVQAIYTPIFDVDGKPWKIFTIA 651 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNR--AVSKLFGYPVED 491 + + + ++ + + + + G+ + N I + N ++L Sbjct: 652 SDLSERKAMEQDLVAAKERAEQA--SIAKGMFLANMSHEIRTPMNAIIGFTELL-LDSAL 708 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + + + + + L +IL + Sbjct: 709 DPVQLKHMQTVRQSARSLLGLLNDILDTAKLERGALEL 746 >gi|153002703|ref|YP_001368384.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151367321|gb|ABS10321.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1625 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 126/777 (16%), Positives = 271/777 (34%), Gaps = 68/777 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 D G + ++ + G +G C + I ++L + + T Sbjct: 363 DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTSLNRIT 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 + +G++L A+PIY + + +G + + L L+++ Sbjct: 423 SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------KNKVSSLTE 245 + + + D +QQ + ++ T Sbjct: 479 VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYPREQLVGKTH 538 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYL 303 + + + S + ++ G + + + ++ Sbjct: 539 AILKSGEHDVSFWQSMWQQINSGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + GN+ N L Y + Sbjct: 599 ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKP------------VMLYRSDRTCIAASARLHTIQW 405 + I + L + + + + R++ + R T Sbjct: 659 EMIGQSTPAPLHLPEEVMVRSAELSAEYGHDIQGFDVFIYKARAEGS----ETRNWTYVR 714 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + ++ + E + GI + + ++ + L E GI Sbjct: 715 KDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGI 774 Query: 466 AIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 N G L N + ++ + + + +++ + + V + L L Sbjct: 775 WTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIVVADAKLKAALQGID 834 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + + I++ + DI+E +Q + L AK A+ Sbjct: 835 LYDSIFRVVRTDGTIRYVQAAAQIERDKHGNTIRVIGINLDITEQRQLEETLRAAKHEAD 894 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S+ KS FLA +SHEIRTP+ A++G ++I++ + +Y N + +L Sbjct: 895 AASAAKSAFLANMSHEIRTPMNAVLGMLQLIQHTALSV----QQQDYVNKTQIAAKSLLG 950 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 ++ND+LD SKI++GK+ L P S++ + + ++ +K + + +P +L Sbjct: 951 LLNDILDFSKIDAGKLTLDPHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPSWLL 1010 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEK 755 AD ++QI +N+ NA+ FT G I+ I V + + DTG+G+++ ++E+ Sbjct: 1011 ADQLRLQQILVNLAGNALKFTHQGQVIVGIECLRHEANTVTVQISITDTGIGISDEQIER 1070 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPL 810 F Q +S R G+GLGL ++K +V+ G+ + S G+ + FP+ Sbjct: 1071 IFTGFEQAESSTSRRFGGSGLGLAISKRLVELMGGQLQVTSQIGVGSRFWFDVTFPI 1127 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 113/426 (26%), Gaps = 35/426 (8%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + EF G RGFG + RV + A ++ + ++ + E+Y I Sbjct: 92 TRDVDHEFPGARGFGFIR--RVPSADEAAFIARARQDDWPDFNIRQLNAHDGERYVIEYI 149 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P R K V AH+ + + + + + Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 + ++ P N Sbjct: 207 IY--------------------RTGLVPKSQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + DI A + + + D + Sbjct: 247 MTKLL----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRQWQIEVIAYPSFI 302 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ + + I + + ++ + + + S+LE + DGI Sbjct: 303 KSLHLNQPSLVLLSGSLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G I S N+ +LFGY L + + + L + L + Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTS-LNR 420 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583 IT ++ LS + T+ DI+ + + + E++ + Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480 Query: 584 HKSDFL 589 ++ L Sbjct: 481 KRTHAL 486 Score = 91.6 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 39/389 (10%), Positives = 105/389 (26%), Gaps = 29/389 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 D +G + E+++ + G +++G + S + + + +W+G+ Sbjct: 509 TDPNGVILEVNDNFCRISGYPREQLVGKTHAILKSGEHDVSFWQSMWQQINSGQSWHGEI 568 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205 T + + P++ + F I +R LG L Sbjct: 569 CNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVLD 626 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E+ + V+ + + T H + + L Sbjct: 627 AASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLPEEVMVRSAELSAEY 686 Query: 266 ESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + F + +Q+ ++++ E YL Sbjct: 687 GHDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDI 746 Query: 310 SLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 SL + N + + + + ++ GN N + Y + + G Sbjct: 747 SLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQG 804 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 D+ + L + + + ++ + + + ++ Sbjct: 805 LTYEHWSMRVHPDDIVVADAKLKAALQGIDLYDSIFRVVRTDG-TIRYVQAAAQIERDKH 863 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + GI + + R + + + Sbjct: 864 GNTIRVIGINLDITEQRQLEETLRAAKHE 892 >gi|254414421|ref|ZP_05028187.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178651|gb|EDX73649.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 992 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 96/741 (12%), Positives = 241/741 (32%), Gaps = 44/741 (5%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 S +T+G + ++ + + T + ++ Sbjct: 270 VYYSPRWSQTLGYHVDEISDRFTEWLNRIHPGDRERVLATFQDYIDGLTPSLELEHRLLD 329 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 Y I + N + +R G + + ++ +L Sbjct: 330 KEGNYRWILSRGASLRDANGKP--YRIVGSNRDISDRKRTLSTLRLTQERLRYLLSQSPA 387 Query: 214 HS----SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEKYPLLTSEES 267 S + + ++ + + + L ++ Sbjct: 388 VLYSRQVSGNYGVTFMSDNTATVVGYSAQDFITNPPFWVNHIHPEDVPRVCANLPKVFDT 447 Query: 268 SLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-----------SAYF 315 E F + + + + E + + + Sbjct: 448 GHHVYEYRFLHQDGTYRWMHDELKLIYDEAGNPLEMVGFWTDITENKHAELILKQQTKAL 507 Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + V+ P+ + + + + + + + + G + Sbjct: 508 QDAHQRLGFHVENSPLAVVEWDNQFRVQRWSKQAEEIFGWTTSEVFGKRSGDWQFI---Y 564 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D ++ M D + + + + + + + ++ + + + Sbjct: 565 PDDIEIVRQEMSQLLDGSTSSVVYQNRNLTKDGRVVICQWYESVLL-DESGKMVSILSLV 623 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + + L +LE T IA+ +++ +R + + +DI+ Sbjct: 624 QDITEAKQTETALRHNAEMLRLLLEYTPAAIAMFDKQMNYQLVSRRWLEDYNLENQDIIG 683 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSS 552 K P L Q E + + + E++ +S I I S Sbjct: 684 KNHYELF-PEIPDTWKQIHQRCLQGASEQCDEDLFIRADGEKQWISWEIRPWIGNSGDIS 742 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + ++E KQ K KL + + + F SH+++ PL A+ +++ + + Sbjct: 743 GIIMNTEVVTERKQAKEKLKELNQELWQSNRDLEQFAYVASHDLQEPLRAVNSYAQ-LLS 801 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +++ + + +Y +YI + ++NDLL+ S++ + L +P + + +A+ Sbjct: 802 RKYQNQLDAKADKYLHYIMDGATRMQQLINDLLEFSRVGTRGKPL--QPTDSETIIRQAM 859 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQIIIST 729 + + E + ++ +P ++AD + Q+ N++ NAI F TP I Sbjct: 860 ENLNVAIAESQAIVTYD---ALPTVIADQTQLTQLFQNLIGNAIKFRRETPPNVHIS--- 913 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E V+D G+GM + L++ F ++ + + GTG+GL + K +V+ + Sbjct: 914 AQNQGNEWTFVVQDNGIGMESEYLDRIFTIFQRLHS--RRDYPGTGIGLAICKKIVERHG 971 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ ++ S GT P+ Sbjct: 972 GRIWVNSELGIGTTFYFTIPV 992 Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats. Identities = 44/508 (8%), Positives = 128/508 (25%), Gaps = 32/508 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I+ G + +++ K +G K+ ++ + + L + + Sbjct: 30 IEPDGRIGQLNPAWCKVLGWTPEKVRSRHWIELVHPEDVTAT--LTALATKAVPVSFRNR 87 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G ++ L Y G+ + LD+ F+ Sbjct: 88 YRHDQGNYHWLEWTLN----YDEAG-----YGYAVAREITDSLPRDC---ELDRFFNMSV 135 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEES 267 + + + + + ++ + H DD + T + L + + Sbjct: 136 NLM-AIAGSDGYFKRVNPAFERVLGYPLTELLTQPFLEFVHPDDRVATLTEIEKLATGTT 194 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 S+ + + + + + A E + + Sbjct: 195 SIQFENRYRCQDGSYRWLAWNSASFPAKGLIYAVGCDITKQKQTQAILQETQERYELVAE 254 Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + ++ Y +P + Y + + + L+ D + Sbjct: 255 GSNDGLWDWNLLTDQVYYSPRWSQTLGYHVDEISDR---FTEWLNRIHPGDRERVLATFQ 311 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 D + + ++ + + G + D + Sbjct: 312 DYIDGLTPSLELEHRLLDKEGNYRWILS-RGASLRDANGKPYRIVGSNRDISDRKRTLST 370 Query: 447 MEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYPVEDILRKP--FTVFLE 502 + + +L +L + + G + + + + GY +D + P + + Sbjct: 371 LRLTQERLRYLLSQSPAVLYSRQVSGNYGVTFMSDNTATVVGYSAQDFITNPPFWVNHIH 430 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 + L ++ ++ + +K + + Sbjct: 431 PEDVPRVCANLPKVFDTGHHV---YEYRFLHQDGTYRWMHDELKLIYDEAGNPLEMVGFW 487 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586 DI+E K + L K + Sbjct: 488 TDITENKHAELILKQQTKALQDAHQRLG 515 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 44/522 (8%), Positives = 146/522 (27%), Gaps = 43/522 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148 + GY K ++ + +G +++ + + L T + Sbjct: 142 GSDGYFKRVNPAFERVLGYPLTELLTQPFLEFVHPDDRVATLTEIEKLATGTTSIQFENR 201 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ ++ + A+ P + + +A+ + +++ + Sbjct: 202 YRCQDGSYRWLAWNSASFPAKG--------LIYAVGCDITKQKQTQAILQETQERYELVA 253 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSS-LTEYYAHKDDVLKTEKYPL 261 E D + ++ + L + + + Sbjct: 254 EGSNDGLWDWNLLTDQVYYSPRWSQTLGYHVDEISDRFTEWLNRIHPGDRERVLATFQDY 313 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317 + SL + N +L++ + + + + + + Sbjct: 314 IDGLTPSLELEHRLLDKEGNYRWILSRGASLRDANGKPYRIVGSNRDISDRKRTLSTLRL 373 Query: 318 GENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + + P + V + + + + + + Y + D I + Sbjct: 374 TQERLRYLLSQSPAVLYSRQVSGNYGVTFMSDNTATVVGYSAQDFITNPPFWVNHIHPED 433 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + A P + + M ++ + G Sbjct: 434 VPRVCANLPKVFDTGH------HVYEYRFLHQDGTYRWMHDELKLIYDEAGNPLEMVGFW 487 Query: 435 PEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + + + ++ +L +E + + + + + ++ ++FG+ Sbjct: 488 TDITENKHAELILKQQTKALQDAHQRLGFHVENSPLAVVEWDNQFRVQRWSKQAEEIFGW 547 Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 ++ K F+ + ++ ++++L + TK+ +++ + Sbjct: 548 TTSEVFGKRSGDWQFIYPDDIEIVRQEMSQLLDGSTSSVV-YQNRNLTKDGRVVICQWYE 606 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 L S + DI+E KQ + L H ++ Sbjct: 607 SVLLDESGKMVSILSLVQDITEAKQTETALRHNAEMLRLLLE 648 Score = 89.3 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 25/244 (10%), Positives = 76/244 (31%), Gaps = 24/244 (9%) Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + G + NP++ + + + + + + + + + Sbjct: 29 IIEPDGRIGQLNPAWCKVLGWTP-EKVRSRHWIE------LVHPEDVTATLTALATKAVP 81 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 ++ R + ++ N + + ++ + + + Sbjct: 82 VSFRNR---YRHDQGNYHWLEW--TLNYDEAGYGYAVAREITDSLPRDC----------E 126 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L + + +AI +G N A ++ GYP+ ++L +PF F+ + + Sbjct: 127 LDRFFNMSVNLMAIAGSDGYFKRVNPAFERVLGYPLTELLTQPFLEFVHPDDRVATLTEI 186 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++ + +++ ++ L P DI++ KQ + L Sbjct: 187 EKLATG--TTSIQFENRYRCQDGSYRWLAWNSASFPAKGLIYAVGCDITKQKQTQAILQE 244 Query: 574 AKKI 577 ++ Sbjct: 245 TQER 248 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 6/120 (5%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + ++D II +G I N A K+ G+ E + + + + + L Sbjct: 17 QAFFHYSADLFCIIEPDGRIGQLNPAWCKVLGWTPEKVRSRHWIELVHPEDVTATLTALA 76 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + L + Y +I++ +L Sbjct: 77 T-----KAVPVSFRNRYRHDQGNYHWLEWTLNYDEAGYGY-AVAREITDSLPRDCELDRF 130 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 41/400 (10%), Positives = 101/400 (25%), Gaps = 41/400 (10%) Query: 76 FDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNH 132 F + W D ++ S++ + G ++ G R I+ Sbjct: 516 FHVENSPLAVVEW--DNQFRVQRWSKQAEEIFGWTTSEVFGKRSGDWQFIYPDDIEIVRQ 573 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 L +T + V + + + +V Sbjct: 574 EMSQLLDGSTSSVVYQNRNLTKDGRVVICQWYESVLLDESGKMV--SILSLVQDITEAKQ 631 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + + L E ++ + Y + S++ + + Y Sbjct: 632 TETALRHNAEMLRLLLEYTPAAIAMFDKQMNYQLVSRRWLEDYNLENQDIIGKNHYELFP 691 Query: 251 DDVLKTEKYPLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + ++ + +S ED F + + NS + + + Sbjct: 692 EIPDTWKQIHQRCLQGASEQCDEDLFIRADGEKQWISWEIRPWIGNSGDISGIIMNTEVV 751 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLST 368 + E + + ++S D+E A S Sbjct: 752 TERKQAKEKLKELNQEL---------------------------WQSNRDLEQFAYVASH 784 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L P + N+ + + ++ A LH I + + + ++ Sbjct: 785 DLQEPLRAVNSYAQLLSRKYQNQLDAKADKYLHYI-MDGATRMQQLINDLLEFSRVGTRG 843 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL--EATSDGIA 466 + R + + + + +I+ +A IA Sbjct: 844 KPLQPTDSETIIRQAMENLNVAIAESQAIVTYDALPTVIA 883 >gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1449 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 132/755 (17%), Positives = 270/755 (35%), Gaps = 50/755 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTW 143 F D G ++ +G +++ L D+ H+ N+++ + + + + Sbjct: 302 FMCTHDLQGRFLSVNSAGATILGYTKDEILQRSLFDIIPASRHLLINDYLAE-IAAKGSS 360 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G+ G + N G + L L + Sbjct: 361 KGQMITRSKNGGGNIWMYNNKLQNASDGNSYVIG--------NAIDITERHRLEDDLRRT 412 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV---------L 254 L + E S + + VS+ + Sbjct: 413 KEALEQTNSVARVGGWELDIEKQNISWTAITKEIHGVSADYQPRLDNAIRFYKEGKSRER 472 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSL 311 TE L S + + + + N + + Sbjct: 473 ITEVINLAISNGTPWDLELQIVNTQGREIWVRAIGNAEFENGMCKRIYGTFQDIDETKKT 532 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGL--- 366 + + L + + + + G + N LT Y + + + Sbjct: 533 AIAVNTSRKLFKDLLYAASEVSIIATDVNGLITVFNKGAEKLTGYAADEMVGKQTPAIIH 592 Query: 367 ---------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 L +S V + + + T S ++ + Sbjct: 593 SPAEVNKRGEELTAHYGVSVEGFGVFVKVAQITGS----EHHEWTYIKKDGTSRIVSLVV 648 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + GI + + RI ++K+ E +L + ++ +A+++ E ++ Sbjct: 649 TPIRDIDNQINGYLGIATDITERRIIEQKLIAERARLSAFVKNAPAAVAMLDNEMRYIAV 708 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 + + + D++ + + + + + + R+ + + L + E + Sbjct: 709 SNRWLEDYQLTGTDVIGRSHYDLFGSVSVNRRSMHQWVLAGNIERKEEDTLILPNINEVQ 768 Query: 538 LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++ + + +I+ +++ +L +AK AE+ + KS+FLA +SHE Sbjct: 769 YITWEMRPWYQYDGKIGGMMMFTQNITSMIKQREELKNAKLHAEQANIAKSEFLANMSHE 828 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL +IGF++++ + N +Y + +++S N +L I+ND+LD SKIE+GK+ Sbjct: 829 IRTPLNGVIGFTDLVLKTKL----NETQQQYLSIVNQSANALLSIINDILDFSKIEAGKL 884 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 L E L E +A ++ K + + + + ++PR I AD +KQI +N+L N Sbjct: 885 ELDAERCDLYEMSCQATDIITYQVQTKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGN 944 Query: 715 AIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A FT G +I + +T N + VRDTG+G+ + K + F Q S + Sbjct: 945 ASKFTDQGEIELKIEVLSTTGDNTSMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKY 1004 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GTGLGL ++ ++ K + S P KG+L Sbjct: 1005 GGTGLGLTISNKLLGLMGSKLQLESVPGKGSLFYF 1039 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 65/533 (12%), Positives = 155/533 (29%), Gaps = 42/533 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G+ K+++ +G ++ L D + L T + Sbjct: 187 DGFFKKVNPAFKNVLGWDTEVLLESSLYDFVHPDDLKKTRQEVQRLAMGKQTTNFTHRFR 246 Query: 152 IEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + + + + P F I + +++ + E Sbjct: 247 TQNKQYKILQWV-ASPDPTTG--------SLFAIARDITNERAREMALILSEERATAFFE 297 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265 +G + S S + K+++ SL + +L + + ++ Sbjct: 298 NSQGFMCTHDLQGRFLSVNSAGATILGYTKDEILQRSLFDIIPASRHLLINDYLAEIAAK 357 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 SS + LQN S + + + + ++ T E Sbjct: 358 GSSKGQMITRSKNGGGNIWMY--NNKLQNASDGNSYVIGNAIDITERHRLEDDLRRTKEA 415 Query: 326 VDKCP-IPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +++ + ++ N S+ +TK + D + + S + Sbjct: 416 LEQTNSVARVGGWELDIEKQNISWTAITKEIHGVSADYQPRLDNAIRFYKEGKSRERITE 475 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + L S+ T L + E N + + G + +T+ Sbjct: 476 VINLAISNGT--PWDLELQIVNTQGREIWVRAIGNAEFENGMCKRIY--GTFQDIDETKK 531 Query: 443 NKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVF 500 + +L A S+ I + G+I N+ KL GY ++++ + + Sbjct: 532 TAIAVNTSRKLFKDLLYAASEVSIIATDVNGLITVFNKGAEKLTGYAADEMVGKQTPAII 591 Query: 501 LEQNTPSVMNHYLTE------------ILSLDLRQTLEKITLGSTKEE--KLLSLRIIIK 546 + LT + + + K+ +++SL + Sbjct: 592 HSPAEVNKRGEELTAHYGVSVEGFGVFVKVAQITGSEHHEWTYIKKDGTSRIVSLVVTPI 651 Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + + Y DI+E + + KL + + +A + +E+R Sbjct: 652 RDIDNQINGYLGIATDITERRIIEQKLIAERARLSAFVKNAPAAVAMLDNEMR 704 Score = 95.5 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 85/276 (30%), Gaps = 18/276 (6%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + V + G NP+F + + + +E S+L Sbjct: 159 VERRQKAELRNFESLFKLSNDMICVAGTDGFFKKVNPAFKNVLGWDTEVLLE-----SSL 213 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D D + + + Q + L P Sbjct: 214 YDFVHPDDLKKTRQEVQRLAMGKQTTNFTHRFRTQNKQYKILQWVASPDPTTGSL----- 268 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I + + R + + + + + E + + + +G LS N A + + GY Sbjct: 269 -FAIARDITNERAREMALILSEERATAFFENSQGFMCTHDLQGRFLSVNSAGATILGYTK 327 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKL 548 ++IL++ + + ++N YL EI + + + +K + + + Sbjct: 328 DEILQRSLFDIIPASRHLLINDYLAEIAAKGSSKG---QMITRSKNGGGNIWMYNNKLQN 384 Query: 549 PFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKES 582 + DI+E + ++ L K+ E+ + Sbjct: 385 ASDGNSYVIGNAIDITERHRLEDDLRRTKEALEQTN 420 >gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1202 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 113/650 (17%), Positives = 233/650 (35%), Gaps = 27/650 (4%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 ++R+ + + L+++ L + + K + + ++++ Sbjct: 132 MSRLALERSEFRRHLERQKFALDQHAIVSITDTKGVILYANDRFCQISGYTQDEILGQAH 191 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + + + + Y + + +Y+ Sbjct: 192 NLVNSGYHDSGFFEVMWRTIARGEVWNGEVCNKAKDGRLYWVSATIVPFLDERGKPIQYI 251 Query: 304 SHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 + R + +E D F G + NP L + + Sbjct: 252 AIRTDITRQKALEEKIEDNRRFLQSISDNIGEGVFALDVQGFCTFLNPEAERLLGWTQDE 311 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + + + N + DR S I + + Sbjct: 312 LAGRSFHDTVHYQDAEGMPMNEADCPVHDAVDRGVDYRSDEDVFIHRDGG-IFPVNISVV 370 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + G+ +++ +R+++ +L L+A++ G + + Sbjct: 371 PVR-EDGVVTGAVGVFQNITESKQIQRQLKQSEERLQIALDASNTGFWDWDPLQDRAYFS 429 Query: 479 RAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + GY DIL + L + L L R+ E K+ Sbjct: 430 DQWLSMVGYQQGDILNNSTGWLDLLHGEDLPHVERELEAHL-NGQRKNFEVEFRMRHKQG 488 Query: 537 KLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + + + + DIS+ K+ +++L A AE + KS+FLA Sbjct: 489 HWVWILSSGRVIERDEEKRALRMAGIHKDISDRKRVEDELKKAMLDAESANRSKSEFLAN 548 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ ++G E++ N P + S +L I+ND+LD SKIE Sbjct: 549 MSHEIRTPMNGVVGMMELLSNTELTP----EQQSHMRTARNSAESLLTIINDILDFSKIE 604 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 +GK+ L L E V + +L+ + +++ + + ++P ++ D ++Q+ +N Sbjct: 605 AGKLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPADLPMQVAGDPTRLRQVLVN 664 Query: 711 ILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 ++ NA+ FTP G ++ ++ + V + VRDTG+G+ + + F Q S Sbjct: 665 LVGNAVKFTPEGEVEVRMTVERQDADTVTVLTEVRDTGIGIDEAVRPRLFRMFTQADGST 724 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815 R GTGLGL ++K +V+ G+ S +G+ I FP+ + Sbjct: 725 TRRFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRITFPIVAKAQ 774 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 39/401 (9%), Positives = 108/401 (26%), Gaps = 16/401 (3%) Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 D A+ L + + E S Q+ + + + Sbjct: 19 DESAVDALLQELDALPAEQISPASVKALHGLKTLLQRVEQTYEHNERDLLLRNRSLHLSS 78 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + L L + Q ++ + Sbjct: 79 EELSDANERLRRETARQEQLLSTLRQTANHLLEADQKPTLGEDEASLEQLSDLMSRLALE 138 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + F +D+ I + G + YAN F ++ Y + + A L Sbjct: 139 RSEFRRHLERQKFALDQHAIVSITDTKGVILYANDRFCQISGYTQDEILGQA----HNLV 194 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 D+ + + + ++ ++ + + Sbjct: 195 NSGYHDSGFFEVMWRTIARGEVWNGEVCNKA---KDGRLYWVSATIVPFLDERGKPIQYI 251 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + + + K+E L SI + +G+ ++ +G N +L G+ ++ Sbjct: 252 AIRTDITRQKALEEKIEDNRRFLQSISDNIGEGVFALDVQGFCTFLNPEAERLLGWTQDE 311 Query: 492 ILRKPFTVFLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + + F + + + + + + ++ ++ + + I + Sbjct: 312 LAGRSFHDTVHYQDAEGMPMNEADCPVHDAVDRGVDYRSDEDVFI-HRDGGIFPVNISVV 370 Query: 547 KLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + +I+E KQ + +L +++ + Sbjct: 371 PVREDGVVTGAVGVFQNITESKQIQRQLKQSEERLQIALDA 411 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 32/388 (8%), Positives = 100/388 (25%), Gaps = 30/388 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147 D G + ++ + G +++G V+ H + + R W G+ Sbjct: 162 TDTKGVILYANDRFCQISGYTQDEILGQAHNLVNSGYHDSGFFEVMWRTIARGEVWNGEV 221 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + +P + + I + + + Sbjct: 222 CNKAKDGRLY--WVSATIVPFLDERGKPIQY--IAIRTDITRQKALEEKIEDNRRFLQSI 277 Query: 208 ----------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 +++ + + E + R + + + Sbjct: 278 SDNIGEGVFALDVQGFCTFLNPEAERLLGWTQDELAGRSFHDTVHYQDAEGMPMNEADCP 337 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAY 314 + + +++ F + + ++ + + + + + Sbjct: 338 VHDAVDRGVDYRSDEDVFIHRDGGIFPVNISVVPVREDGVVTGAVGVFQNITESKQIQRQ 397 Query: 315 FDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E +D F+ + Y + +L + Y+ D + + G LL Sbjct: 398 LKQSEERLQIALDASNTGFWDWDPLQDRA-YFSDQWLSMVGYQQGDILNNSTGWLDLLHG 456 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L L + ++ + ++ + G Sbjct: 457 EDLPHVERELEAHL---NGQRKNFEVEFRMRHKQGHWVWILSSGRVIERDEEKRALRMAG 513 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEA 460 I + D + + +++ ++L+A Sbjct: 514 IHKDISDRKRVEDELK------KAMLDA 535 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 67/252 (26%), Gaps = 20/252 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI------DPNNHIGDLLKR 139 + +D G+ ++ E + +G ++ G D + + + D + R Sbjct: 285 VFALDVQGFCTFLNPEAERLLGWTQDELAGRSFHDTVHYQDAEGMPMNEADCPVHDAVDR 344 Query: 140 Q-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + +G P++++ +P+ + +G G+ + K Sbjct: 345 GVDYRSDEDVFIHRDGGIF--PVNISVVPVR-EDGVVTGA--VGVFQNITESKQIQRQLK 399 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKD 251 + +++ + D + + N L + Sbjct: 400 QSEERLQIALDASNTGFWDWDPLQDRAYFSDQWLSMVGYQQGDILNNSTGWLDLLHGEDL 459 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPS 310 ++ E L + + + + + ++ K + S Sbjct: 460 PHVERELEAHLNGQRKNFEVEFRMRHKQGHWVWILSSGRVIERDEEKRALRMAGIHKDIS 519 Query: 311 LSAYFDEGENLT 322 ++ Sbjct: 520 DRKRVEDELKKA 531 >gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 641 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 129/578 (22%), Positives = 226/578 (39%), Gaps = 17/578 (2%) Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 ++++V S E+ H+ + + L ++ + N+ Sbjct: 71 VRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQIAENLRGSND 130 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354 + R TV P ++ + NL AN F LT+ Sbjct: 131 RLDQMVERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVANKIFFDLTQI 190 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAM 413 +++ +L + + P L R + A + + Sbjct: 191 PDSFNVKGINFYEFMLYNAQRGEYGPGDPEELARQRQEIAARMEPHAFDRTRPDGTVIEV 250 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 P + + + + ++LEA + +I +G Sbjct: 251 RGNPIPGR-------GFISTFTDITERAKAEEALREAATMARAMLEAPGLLVLLIRMDGT 303 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 I+ N + G + ++ + + + E Sbjct: 304 IVDLNEEAAVGLGSHKDAMIGTNIFNAMPTKVAERRFALAQQAILEARAIYFEDE----- 358 Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 ++ + + + + HD++ + +L A +A+ + K+DFLA Sbjct: 359 RDGRWFETTMTPYPMDQDGIPRVMVIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAA 418 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL AI+GFSE+I + FGP+G RY Y I+ +G +L ++ND+LDIS+IE Sbjct: 419 MSHELRTPLNAILGFSEIISREMFGPVG-ERYRTYGQDINAAGQHLLAMINDILDISRIE 477 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 G L EPV E + LV A + + ++P ++ D R KQI +N+ Sbjct: 478 IGAFTLCIEPVDPHELAYSCLRLVGSRAEAGNVDLSEDMPESLPHLMIDSRRTKQILINL 537 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 L NA+ FTP GG++ + + + V DTG+GM+ ++ A+ PFGQ+ R Sbjct: 538 LGNAVKFTPPGGKVTLRGETRDSGGIAFHVIDTGIGMSEADMAVALSPFGQVDTGLDRRF 597 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EG GLGLPLAK++ + + G I S P KGT + + FP Sbjct: 598 EGAGLGLPLAKSLAELHGGSLEITSIPGKGTTVSVYFP 635 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 4/140 (2%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLF----GYPVEDILRKPFTVFLEQNTPSVM 509 + +L+ GI++ + + ++ NR + L G+ D+ + F Q Sbjct: 4 MQGVLDHLDQGISVFSADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGEYGG 63 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 ++ + +++ + E + ++ II + T D++ +Q Sbjct: 64 HYDVEDMVRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQIAE 123 Query: 570 KLSHAKKIAEKESSHKSDFL 589 L + ++ ++ L Sbjct: 124 NLRGSNDRLDQMVERRTRAL 143 Score = 39.2 bits (90), Expect = 2.8, Method: Composition-based stats. Identities = 26/425 (6%), Positives = 82/425 (19%), Gaps = 62/425 (14%) Query: 91 AHGYLKEISEELPKTIGNY---------AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 A L + +I H D + + + Sbjct: 20 ADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGEYGGHYDVEDMVRHRVDSAR 79 Query: 142 TWYGKTTLW-PIEGTNLYV---------------PIDLA---ALPIYSRNREFSGFRGFG 182 + GT L + + + A + N Sbjct: 80 EFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQIAENLRGSNDRLDQM---- 135 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + R D + + + + ++ L + Sbjct: 136 VERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVANKIFFDLTQIPDSFN 195 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------- 295 + ++ + ++ PE+ + + F + + Sbjct: 196 VKGINFYEFMLYNAQRGE----YGPGDPEELARQRQEIAARMEPHAFDRTRPDGTVIEVR 251 Query: 296 ------SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348 + E + ++ + + G + N Sbjct: 252 GNPIPGRGFISTFTDITERAKAEEALREAATMARAMLEAPGLLVLLIRMDGTIVDLNEEA 311 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + D + + + + + + + A A + + Sbjct: 312 AVGLG-SHKDAMIGTNIFNAM--------PTKVAERRFALAQQAILEARAIYFEDERDGR 362 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 I + ++++ + +D +A + Sbjct: 363 ---WFETTMTPYPMDQDGIPRVMVIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAAM 419 Query: 469 NREGI 473 + E Sbjct: 420 SHELR 424 >gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex domain structure [Aromatoleum aromaticum EbN1] Length = 1519 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 143/796 (17%), Positives = 280/796 (35%), Gaps = 55/796 (6%) Query: 56 DQNQESVSNTNYLDSENTFV-FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 + +ES + F F+P D + E + A + Sbjct: 334 AEERESFERAVRAEGGRDFRIFEPGD---------DGNTRPATGRPEYFPVL-YSAPREA 383 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G + + + + + T G L + L P++ Sbjct: 384 GRSILGLDHGYDPHRRVAMEQARQSREAHTVRGVPLLRTKRLSLLVF------QPVHDVA 437 Query: 173 REFSGFRGFGIVHVNRVDN----DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 R D L L + + E I + Sbjct: 438 RASWDAAARAGPRDLLGHVVGVFDVEKLFIPLAEAAHTRSIGFRVSDVTSGEPAQILLDE 497 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTK 285 P K + K + T E + + + Sbjct: 498 MPAGVAPTLRKEIGFGGRTWSLELAAKAPTGYVDTHGEEEIYLAFSVLAAVLVAYIALSN 557 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 + +Q E L+ L+A DE + + ++VD I V G N Sbjct: 558 AGHTAAIQREVAEQTAELTRALDARLAAE-DERDRIFEQSVDLLGI---VGIDGYFKRVN 613 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P+F + + + + D + + +A + + + + +W Sbjct: 614 PAFARTLGWSNEEFLSRPYLDFVHPDDVEGTRADAARVAAGHTTVGFENRYRCKDGNWRW 673 Query: 406 NRENSLA----MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCS 456 ++ + F+ Q EN ++ R+++R+ +E ++ + Sbjct: 674 LEWKAVPRTGGLMFVTAIDTTQRRENARHLRTLNAELVHRVDEREAALEALGAKKDEIRA 733 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L+ + + IN +GI+ N AV +FGYP+ +++ + ++ + + YL Sbjct: 734 VLDNLIECVVTINAQGIVQGANAAVEAVFGYPLGEVIGRNVSLLMPSPERERHDDYLARY 793 Query: 517 LSLDLRQTLE--KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLS 572 L R + + G K + + + + ++ + T+ DISE K L+ Sbjct: 794 LDTGARHVIGSTREVEGQHKLGHRIPMELSVAEYRVRDEQFFVGTLRDISERKAFIAALT 853 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS FLA +SHEIRTP+ ++G EV+ + + I Sbjct: 854 RAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLARTSL----SEHQADLVATICG 909 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S + +L I++D+LD SKIE+G++ L PVS+ + V + A + + + Sbjct: 910 SSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLPLAARLDVDLSVFVSP 969 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTG 745 +P + AD ++Q+ N++ NA+ F+ + ++ + + D G Sbjct: 970 EVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVADVVPLQLAVSIVDNG 1029 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++E+ PF Q S R GTGLGL + + +VD G + S P +G+ Sbjct: 1030 IGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEGGIKVRSEPGQGSTFT 1089 Query: 806 IIFP-LYDTSHPHDCI 820 + P + P + Sbjct: 1090 VTIPFVLSDEQPAPIL 1105 >gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1112 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 133/773 (17%), Positives = 277/773 (35%), Gaps = 55/773 (7%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----------- 136 ID+ GY+K ++ G A ++ M++ D++ + H + + Sbjct: 47 IDSDTGYIKRANQAALDFYGYSAQELGDMKIQDINVLSHREVQEEMRRASLQDRNYFQFT 106 Query: 137 --LKRQNTWYGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV------ 184 L + WP + D+ + ++F F G V Sbjct: 107 HQLATGEERSVEVYSWPYSTDEGNYLYSIIHDVTPRIEAEKAQQFFLFLGITTVLVVIIA 166 Query: 185 ---HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKN 238 + ++ ++K S + + + V + + + SP ++ Sbjct: 167 LLMKYIYSSRAAASRLQQSEEKLSAIFKAARNVGLVVTDMQSVVQEFSPGAEKIFGYSRD 226 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 ++ H +D + ++ + + + F ++ Sbjct: 227 EIMGRYVGVLHLEDESSRFPEYIARLYEQQEGFSVETRLVRKSGEIFPALLNFEPYCDDK 286 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFFVYSHG--NLFYANPSFLL 350 L + +E + + E D F++ S + Y +PSF Sbjct: 287 GRMVGTLGVTLDITERKKAEEALSKSEEMFRQMADNMGEVFWLRSGDNSRMLYVSPSFEK 346 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + D ++ S + + R I Sbjct: 347 VFGRSRQDLYHDPNCFVDMVHGDDRSAVLRELDREVSGDEDASFNMEYR---IVRPDGEI 403 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + F + + GI + + + + + + ++ TSD + ++ Sbjct: 404 RWVWARSFPVRDAQGVIIRYTGIAVDITRIKEAENEFKALSREYETVFNGTSDALFLVQV 463 Query: 471 EG----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 G + N +L G +E I + L ++ ++ + + E Sbjct: 464 LGEESFRFIRNNLTHEQLTGLTMEVIQGRTPQDVLGRDLGGQVSRNYQRCVQARAPISYE 523 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + E + + + S + DI+E K + +L AK+ AEK S KS Sbjct: 524 ETLDLPGGERVWFTTLTPVFENGDISYIVGSAQDITERKNAEIELYQAKEQAEKASMAKS 583 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTP++ IIG +++ ++ + + + S + I+ND+LD Sbjct: 584 EFLANMSHEIRTPISGIIGALDMLASES----ADQSRKDLVDMTLESARSLEQIINDILD 639 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +SK+E+GK++L E SL V + L + A + I ++ + +P + D ++ Sbjct: 640 LSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALKVDADSRLPEYVRGDAHRLE 699 Query: 706 QIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 Q+ N++SNA+ FT +G ++I V +V D+G G++ L F Sbjct: 700 QVLRNLVSNAVKFTQAG-HVLIRVKAMDIDEHKATVEFQVEDSGEGISGDFLPSLFDSFT 758 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q + + +G+GLGL +++ +V G+ + STP +G++ L +S Sbjct: 759 QADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQSTPGRGSVFSFALTLGISS 811 >gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 2213 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 120/635 (18%), Positives = 247/635 (38%), Gaps = 32/635 (5%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK---TE 257 ++ F+ L + + + + ++ D L T Sbjct: 1074 ERSFTELPFTFMTQAIINQAQQATGRANIQSNIEGYRDYRGVAVLGVWRWDSRLGLGVTT 1133 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + L + ++ + T + L + R++ L E Sbjct: 1134 EIDLQEALDAFYQMRIHLITTAIVALLLAIASSMLTVTIGQRATTFMRRSNEELEERVKE 1193 Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI--------------EI 362 ++ V S G + +P+ + + + + + E Sbjct: 1194 RTMRLRSIIENAADGIIVMNSRGIVQNFSPAAETIFGFCASEVVGNNIKMLMPEPTRKEH 1253 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G L +D K + V+ R + + + E+ + Sbjct: 1254 DGYLKHYIDDVKTKVVGKTREVVGLRKNGETFDMDLAVGEFFIDGEHLFTGMVRDITERK 1313 Query: 423 QFPENMPQNGIEPEDV--DTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTN 478 + + + + + E + + K++ V + ++LE + + + N Sbjct: 1314 RMDKELRLSKEDLEKTLYEKTSLEEKLKQNVAYMTTLLENLPIAVFAKDVKNDYRFTLWN 1373 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++FG+ I+ + + EI+ + +++ T+ ++ E++ Sbjct: 1374 HVAVEIFGFKSGQIIGRNDYDLFSTEEANHFRRTDEEIVKHLGIKDIQEETITTSHGERI 1433 Query: 539 LSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L + + S+ DI++ KQ + +L AK++AE + KSDFLA +SHEI Sbjct: 1434 LHTVKVAVPNESGESNILLGITQDITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEI 1493 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AIIG S + + + +Y N I + +L ++ND+LD SK+E+GKM Sbjct: 1494 RTPMNAIIGMSHLALQTGL----DRKQRDYINKIQSASESLLALINDILDFSKVEAGKME 1549 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 + +P +L++ + + L+ + EK++ + ++P ++ D + QI +N+ +NA Sbjct: 1550 IERKPFNLNDTLDKLAQLITVKTREKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNA 1609 Query: 716 IHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 + FT G ++ I +E+V V+DTG+GMT ++ K + F Q S + Sbjct: 1610 VKFTEKGEVVVSIEKVCVDDEQVTLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYG 1669 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL ++K + + G + ST KG+ Sbjct: 1670 GTGLGLTISKKLTELMGGAISVESTFGKGSSFVFT 1704 >gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 778 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 147/756 (19%), Positives = 277/756 (36%), Gaps = 47/756 (6%) Query: 90 DAHGYLKEISEELPKTI----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 L + + G A G R+ ++ L + Sbjct: 28 GPDHRLIRFNRPFASLVETAGGRPAP---GQRMVEILRDLVAPDTGEENRADSGPDDDGR 84 Query: 146 KT---TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-----FGIVHVNRVDNDPRALG 197 T +EG L P ++ R G R F ++ A Sbjct: 85 GTEDDAAERLEGALLGTPTEIRLG--RDRWGLVHGHRLKDGALFCVLRDITASKAGAARI 142 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 +++ + + + + K Sbjct: 143 AESNRRIREAESRLERALESIDQGFYLCDASDTVVLRNAKLAHLLPGLPPLEPGTTYGAM 202 Query: 258 KYPLLTSEESSLPEQEDFHTI-----------------NLNQYTKKQYFGTLQNNSKESF 300 + + + N + +L Sbjct: 203 MAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAWDFENGRGRWVR-VSESLTPEGGRVG 261 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD 359 S + E + + +G + NP+ L Y++ + Sbjct: 262 LLTDITETRKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEEV 321 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + ++ L+ + ++ L I ++ + + Sbjct: 322 VG--ASINRLIPGGESGRHDRSLRRYLQTGQAGIIGRGREELALRRDGS---LLPVELAI 376 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + G+ + + R++ + + T + I + + ++ + Sbjct: 377 SELRLDDRRIFTGLVRDISARKEADRQLRENEERYALAIAGTHEAIVDWDIDSDTITYSD 436 Query: 480 AVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTK-EE 536 ++ + G +D+ R + + + + +L + + G EE Sbjct: 437 RITAIVGLDPKDLDRSASWIALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGRAGAEE 496 Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + L R + P S + DI++ ++ +++L AK+ AE + KS+FL +SH Sbjct: 497 RWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAKSEFLTNMSH 556 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AIIGFSEV+ ++ FGPLG +Y++YA I SG +LD++ND+LD+S+IE+G+ Sbjct: 557 ELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSRIEAGR 616 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L EP+ E V+ LV A + ++ + +P +L + R +KQ+ +N+L N Sbjct: 617 ATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLGN 676 Query: 715 AIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 AI FTP+GG+I +S ++++ V D+G+GM ++ A++PF QI R EG Sbjct: 677 AIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLARRYEG 736 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGLPL+KA V+ + G + STP GT I + P Sbjct: 737 TGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLP 772 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 23/256 (8%), Positives = 69/256 (26%), Gaps = 18/256 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143 ID +G ++ + + G A +++G + + ++ + L+ Sbjct: 297 IDENGIIESFNPAAERLFGYRAEEVVGASINRLIPGGESGRHDRSLRRYLQTGQAGIIGR 356 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DK 202 + +G+ +P++LA + +R G+V + + ++ Sbjct: 357 GREELALRRDGSL--LPVELAISELRLDDRRIFT----GLVRDISARKEADRQLRENEER 410 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------YYAHKDDVLKT 256 + + + + I + + K + + H+ D L Sbjct: 411 YALAIAGTHEAIVDWDIDSDTITYSDRITAIVGLDPKDLDRSASWIALIHPDHRKDYLTR 470 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + L+ + + + S + Sbjct: 471 MDALLRGESSFFSCDFRLAGRAGAEERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGE 530 Query: 317 EGENLTPETVDKCPIP 332 + E + Sbjct: 531 DRLREAKEAAEFANRA 546 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 14/153 (9%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLE--------- 502 +L I + +G+A+ + ++ NR + L + L Sbjct: 12 RLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDTGE 71 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE---EKLLSLRIIIKKLPFSSCYSLTMH 559 +N D + LE LG+ E + + +L + + + Sbjct: 72 ENRADSGPDDDGRGTEDDAAERLEGALLGTPTEIRLGRDRWGLVHGHRLKDGALFC-VLR 130 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 DI+ K +++ + + + S L + Sbjct: 131 DITASKAGAARIAESNRRIREAESRLERALESI 163 >gi|158334364|ref|YP_001515536.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] gi|158304605|gb|ABW26222.1| serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris marina MBIC11017] Length = 2817 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 123/776 (15%), Positives = 273/776 (35%), Gaps = 66/776 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHID-PNNHIGDLLKRQNTWYG 145 DAH ++ +S+ + G I + ++ + I + L + Sbjct: 1770 DAHWTMEFMSDAVTALSGYPVADFIDNRHRSYASIIHPGDVEWVDQVINEQLTHHQPFSL 1829 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +G+ + I++ + + G I ++ + AL + + Sbjct: 1830 EYRVIHRDGSIR--WVTEKGKGIFNADHQLQHLEGV-IFDISDRKHTELALQLSEARANA 1886 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKT--EKYP 260 + G V + I + L +++ L + A H DD+ ++ Sbjct: 1887 AFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLELLQKTVADITHPDDLSESYQLMQL 1946 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L + + +E + + ++ + E+ L S + Sbjct: 1947 LQRGKIGNFTTEERYLRQDGGIIWSSTTVTLVEMGNGEAQYSLGMIQDISDRKAAELALK 2006 Query: 321 LTPETVDKC--PIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + +P +Y L Y + + + + ++ A L + Sbjct: 2007 DSQAQFRRMTENVPGMIYRYVFHPDGQNELTYISSQVREIFEIEPEVALQDASKLWERVH 2066 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L + + RL Q L + + + Sbjct: 2067 PDDL--AFVQSEIQGFHETLQSTPIECRLLLPQK----GLCWIQLIARIERLDNGDTVWD 2120 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G+ + D + + + + +E I + +G +L N ++L GY + Sbjct: 2121 GVALDISDRKAAEANLRFSEQRFRRAIEDAPFPIMLHAEDGEVLQINTTWTELTGYTHPE 2180 Query: 492 ILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RIIIKK 547 I + + + + + E TK + Sbjct: 2181 IPSTAAWAERAYGKDAARVLKEVMAKKYTLTSRWEEGEFTIQTKNGDQCRWQFSSAPLGV 2240 Query: 548 LPFSSCYSLTM-HDISEWKQEKNKLSHA-------------------------KKIAEKE 581 LP ++M D+++ +Q +++L A K+ A+ Sbjct: 2241 LPDGRRIVISMAVDVTQRRQTEDELEQANQQLAEYSHTLEQRVEERTQALQIAKEQADSA 2300 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA +SHE+RTPL I+G+++++ + + I + G+ +L ++ Sbjct: 2301 NQAKSEFLANMSHELRTPLNGILGYAQILNR---STTLIDKERDGIKVIHQCGSHLLSLI 2357 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +D+LD++KIE+ K+ L L + + + ++ A +K I + + + D Sbjct: 2358 DDILDLAKIEARKLELVPVDTYLPAVLHSVVEICKIKAQQKGIDFVYAPKDLPIGVRVDE 2417 Query: 702 RSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + ++Q+ +N+L NA+ FT +G + + +T ++ +V DTG+G+ +L K Sbjct: 2418 KCLRQVLINLLGNAVKFTDNGTVTLNVEVLSTSNQEASLLFQVMDTGIGIAETDLSKLFD 2477 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYD 812 F Q+ ++ R EGTGLGL +++ +V + S G+ PL + Sbjct: 2478 AFEQV-GARDRRAEGTGLGLAISQRIVQLMGHSIEVKSQVGIGSQFSFRLDLPLTE 2532 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 56/515 (10%), Positives = 137/515 (26%), Gaps = 33/515 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150 G + ++ G + IG + + HI LK + + +T Sbjct: 1644 EGIITSWNQAATDLFGYSEAEAIGQSILMLFPPDRHHEETHILTCLKNKKSVENFETVRL 1703 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-- 208 +G + + + ++ P+ + + G IV R ++ + KF +L Sbjct: 1704 HKQGYPIDISVTIS--PLVNSQGKVIGASK--IVRDIRERKIAEVALRQSESKFRNLLTN 1759 Query: 209 ------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPL 261 + + D + S P + H DV + Sbjct: 1760 LDGVVYRCQNDAHWTMEFMSDAVTALSGYPVADFIDNRHRSYASIIHPGDVEWVDQVINE 1819 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDE 317 + + + + + + N + + Sbjct: 1820 QLTHHQPFSLEYRVIHRDGSIRWVTEKGKGIFNADHQLQHLEGVIFDISDRKHTELALQL 1879 Query: 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E D+ + + G + N L Y ++ ++ D Sbjct: 1880 SEARANAAFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLELLQKTVA-----DITHP 1934 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D + +M + ++ + + + E G+ Sbjct: 1935 DDLSESYQLMQLLQRGKIGNFTTEERYLRQDGG-IIWSSTTVTLVEMGNGEAQYSLGMIQ 1993 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI--AIINREGI--ILSTNRAVSKLFGYPVED 491 + D + + ++ Q + E I + + +G + + V ++F E Sbjct: 1994 DISDRKAAELALKDSQAQFRRMTENVPGMIYRYVFHPDGQNELTYISSQVREIFEIEPEV 2053 Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 L+ + + + + + +E L K + L I++L Sbjct: 2054 ALQDASKLWERVHPDDLAFVQSEIQGFHETLQSTPIECRLLLPQKGLCWIQLIARIERLD 2113 Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESS 583 DIS+ K + L +++ + Sbjct: 2114 NGDTVWDGVALDISDRKAAEANLRFSEQRFRRAIE 2148 Score = 144 bits (364), Expect = 5e-32, Method: Composition-based stats. Identities = 54/506 (10%), Positives = 139/506 (27%), Gaps = 31/506 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWP 151 G +++ G +++G + + I +L + W G+ T Sbjct: 1528 GKFIYLNQFHTTLFGYEPNELLGQSWEKLYSPAEVQLFQEIAFPILAKTGRWSGEATAIR 1587 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI- 210 +G++L + L L N + I A + L +++ Sbjct: 1588 KDGSSLDEEVSLFLL----DNGKL-----ICICRDISDRKIAEANSRLLASVVESSNDVI 1638 Query: 211 -----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + +S + D+F + + + H++ + T + E Sbjct: 1639 VTKNLEGIITSWNQAATDLFGYSEAEAIGQ--SILMLFPPDRHHEETHILTCLKNKKSVE 1696 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 T + S R + E+ Sbjct: 1697 NFETVRLHKQGYPIDISVTISPLVNSQGKVIGASKIVRDIRERKIAEVALRQSESKFRNL 1756 Query: 326 VDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + + + + + + L+ Y D I+ + + Sbjct: 1757 LTNLDGVVYRCQNDAHWTMEFMSDAVTALSGYPVADFIDNRH---RSYASIIHPGDVEWV 1813 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 ++ S I + + +T N + G+ + D + Sbjct: 1814 DQVINEQLTHHQPFSLEYRVIHRDG-SIRWVTEKGKGIFNADHQLQHLEGVIFDISDRKH 1872 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + +++ + + + + GI +N + G I N + L GY ++L+K Sbjct: 1873 TELALQLSEARANAAFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLELLQKTVADIT 1932 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLT 557 + S + +L ++ ++ + + + Sbjct: 1933 HPDDLSESYQLMQ-LLQRGKIGNFTTEERYLRQDGGIIWSSTTVTLVEMGNGEAQYSLGM 1991 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS 583 + DIS+ K + L ++ + + Sbjct: 1992 IQDISDRKAAELALKDSQAQFRRMTE 2017 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 65/388 (16%), Positives = 123/388 (31%), Gaps = 27/388 (6%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 P A G L + + + + + + + + V L DD Sbjct: 1385 PEADGALLVRVSATPEQTQLTSTPLADHLDLPVQLIQYVKNTQETLVVDDLATDLPILDD 1444 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L+ + L LP H L + G + +L + SL Sbjct: 1445 FLQQSQPRSL----LCLPILYQSHLRGLLYLQNRNMAGVFTRDRVTVLNFLCSQAAISLE 1500 Query: 313 -AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 A E L ++ + G Y N L Y+ + + + L Sbjct: 1501 NARLFESLALKSSIIESAVDGMAILEGGKFIYLNQFHTTLFGYEPNELLGQS---WEKLY 1557 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 +P + S I+ + + + E + +N Sbjct: 1558 SPAEVQLFQEIAFPILAKTGR---WSGEATAIRKDGSS------LDEEVSLFLLDNGKLI 1608 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + D +I + + L S++E+++D I N EGII S N+A + LFGY + Sbjct: 1609 CICRDISDRKIAEANSRL----LASVVESSNDVIVTKNLEGIITSWNQAATDLFGYSEAE 1664 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + + + H LT + + + T+ K+ + + + I L S Sbjct: 1665 AIGQSILMLFPPDRHHEETHILTCLKN--KKSVENFETVRLHKQGYPIDISVTISPLVNS 1722 Query: 552 SCYSL----TMHDISEWKQEKNKLSHAK 575 + + DI E K + L ++ Sbjct: 1723 QGKVIGASKIVRDIRERKIAEVALRQSE 1750 >gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment'] Length = 981 Score = 376 bits (965), Expect = e-101, Method: Composition-based stats. Identities = 147/836 (17%), Positives = 286/836 (34%), Gaps = 77/836 (9%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 E F + + T + +R + Sbjct: 149 ETRAFAVGDYQIGHITGKATINFGYPIPDDVGPIRAVVFAALDLAWLNRPAADARLPAGS 208 Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG----TNLYVPIDLAA 165 +I + + DP IG L +T +T L EG + + + L Sbjct: 209 VLNVIDRNGT--IVVRYPDPERWIGRL--AVDTPIARTVLAVGEGATETSGVDGIVRLYG 264 Query: 166 -LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 P+ + GI + + L R + + + +++ + Sbjct: 265 FAPLRGALHGPELYVQIGIPT-STAYAEADRLLARNLIGLGLAGVLALAAAWMFGDRFIL 323 Query: 225 FSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 ++ L+ + + + L + + + ++ L Sbjct: 324 RGVRALVYGTERLKAGDLTGRIEVTGRDELGTLAVRFNEMADGLQEA-HDRLAADVRELG 382 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-------DKCPIPFF 334 ++ + + L ++ A+ + T V + P+ + Sbjct: 383 YRAQELGLLREIDLMMLAETPLRDLLSKAVEAFARLADAQTCVLVTADPKSGELTPVANW 442 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--- 391 + +F + + SD + + + Sbjct: 443 GPDLEAIRQYFATFRPRAGEEGGSLGRAIATRKAVTTPDVASDPSMERYRDAALALGIRA 502 Query: 392 -TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN------- 443 + A H + + + Q + E R Sbjct: 503 ILVVPLVADQHVLGAAGIGYPTVRRFSETEVRSMEGFASQLAVALEQTRLREEAKDRRGL 562 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + +++++T D + + + I++ N +LFGY ++ P + + Sbjct: 563 EEALYASRQLFQAVVQSTPDAVIVADGSTRIVACNAGAQRLFGYTEGELQGMPVMALVPE 622 Query: 504 NTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMH 559 L + + + K+ + + + + +H Sbjct: 623 RYRETHRQGLDRFEVTGEARVIGRTIEVDALRKDGSDVPVELSLAGWKTGDRVFYSAILH 682 Query: 560 DISEWKQEKNKLSHA-----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+E KQ L + E S HKS+FLA +SHE RTPL +IIGFS+ Sbjct: 683 DITERKQYTTHLEQTVQEKTRTLRAANQQLEAASRHKSEFLANMSHEFRTPLNSIIGFSD 742 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++++ FGPL + +A I SG +L ++NDLLD+SK+E+GK++LH EP EA+ Sbjct: 743 ILRDPAFGPLT-EKQARFAQNIQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFECREAI 801 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A++ VQ A+ K++ + I+AD KQI LN+LSNA+ FTP GG+I ++ Sbjct: 802 RAALAEVQPQADLKQLELTPQTDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGGRITVT 861 Query: 729 TTHTSNEE----------------------------VILRVRDTGVGMTNYELEKAMKPF 760 + +E + + V DTG+G+ +L + + F Sbjct: 862 VRRAARQEEGDTSQGAAGQGLEILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPRLFQEF 921 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815 ++ + R +GTGLGL L K +V+ + G+ S +G+ + P+ T+H Sbjct: 922 TRLDAAIAKRTKGTGLGLALTKRLVELHGGEIAAVSDGEGRGSTFTVRLPITPTNH 977 >gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 900 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 136/656 (20%), Positives = 252/656 (38%), Gaps = 50/656 (7%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 N L K + + + +S++ + + M ++ + + Sbjct: 88 TNAALELAKYSEIIDVCVGKTDSDNSNLLRVLNTAQGVLNAALVYVMNHEGTVIGSSANV 147 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + L +YP +L F+ ++ ++ + + + Sbjct: 148 DEPSLTGNEYPFRPYFFHALAGNPTFYPAVGVTTKRRGFYFGAPIYTTSHGKPIGVVVIK 207 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY------ANPSFLLLTKYKSVDDIEI- 362 + D + +T D + S+ + + N + + +I+ Sbjct: 208 TSDTSADIFFSHIKDTFDAL-----LVSNDGIVFASTKNEWNFKAAWKIAPERLQEIKDG 262 Query: 363 -------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 L L AP + NN V L + + A L + L + Sbjct: 263 RQFGDHSLSSLPFSLQAPIIHRNNLRYSVDLLPLSNSGWSI-ATLVPAPFPWAIVLVLNS 321 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------QLCSILEATSDGIAI 467 I + + E E + ++ +L +I A+ GI + Sbjct: 322 IVLSLGILTGSIVLHSHKEQELTSQVLAGQEASDRAESARRVSVLELETIFSASLVGIIL 381 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTL 525 + R G I++ N+ +S +FGY E+IL F + +L + D+ Q Sbjct: 382 V-RMGKIINVNKRMSDIFGYSREEILSGDIRQFFSDRQSFRHFVREHLHLLAEGDVEQI- 439 Query: 526 EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 K+ L+ + I + + DIS K + +L HA++ AE S Sbjct: 440 --EYQLKKKDGSLIPCTLSGKAISPQDLAKGTVWVIEDISRRKAVEKELYHAREAAETAS 497 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTP+ IIG S ++ + L + I RS ++ I+N Sbjct: 498 IAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDL----QRQQLELIHRSAIRLMIIIN 553 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SK+E+G+ L SL ++E I ++ A K + + A N+P ++ D Sbjct: 554 DILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHLIVAPNVPDMLVGDQ 613 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------NEEVILRVRDTGVGMTNYELE 754 + Q+ N++ N++ FT G QI ++ ++ + ++ V DTG+G+ + Sbjct: 614 TKIMQVLTNLIDNSLKFTRKG-QITLTVSNQPSPNSFANGDMLLFEVADTGIGIAPTYYD 672 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K + F Q +S R GTGLGL ++K +V+ G+ + S AKGT P+ Sbjct: 673 KVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRIWFESELAKGTRFSFTLPI 728 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 69/237 (29%), Gaps = 15/237 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLW 150 G + +++ + G +++ + + LL + + L Sbjct: 385 GKIINVNKRMSDIFGYSREEILSGDIRQFFSDRQSFRHFVREHLHLLAEGDVEQIEYQLK 444 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ +P L+ I ++ G V V + +A+ K L H E Sbjct: 445 KKDGSL--IPCTLSGKAISPQD------LAKGTVWVIEDISRRKAVEKEL----YHAREA 492 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SL 269 + S + E S + P + + L + E + Sbjct: 493 AETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDLQRQQLELIHRSAIRLMIII 552 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + DF + ++ +Q +L+N E + + P+ + Sbjct: 553 NDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHLIVAPNVPDML 609 >gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1560 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 132/851 (15%), Positives = 279/851 (32%), Gaps = 91/851 (10%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLK 96 + E + Q T + E+ + + + + D G Sbjct: 724 NAFGEFNSNGQMNQIVVTFVDITEFKQAQEELQESKRRYVTLAQASPVGIFRTDVEGNCL 783 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGT 155 ++E + G + +G D + + + +G+ Sbjct: 784 YVNERWQEIAGLTWQQALGKGWSQAIDYNDQTRVLQEWKQAIINHVPFQAEYRFQRPDGS 843 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-------------------L 196 + A+ GF G + + L Sbjct: 844 --VTWVYGQAIAETDEQGILIGFLG--TITDINDRKEAELKLQRLKDELEQKVEKRTWNL 899 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKN----------------- 238 + + + E ++ +++K + S + + + + Sbjct: 900 QRANQQLRQEIFERQQTELALKKSEERFRASFEQAAVGMVLVSLEKRFLKVNPKFCQMLG 959 Query: 239 -------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + + L + + L+T E +L ++ F Sbjct: 960 YTEEELLQKTVLEITHPQDRSQVPQHIEKLITGEIITLSFEKRFFNKTGVTVWTNITISL 1019 Query: 292 LQNNSKES---FEYLS--------HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHG 339 + S + E + + + E + + FV + G Sbjct: 1020 VHGASGQPDYLMEVVEDITDKKRNEAERQAAREALQKSEAQLRSMFEYAAVGIAFVDAQG 1079 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 F +NP+ Y S + + L D N + + D Sbjct: 1080 RPFKSNPAIEKFLGYSSQE-LTQKPFTQFTHPEDALVDLNLYQSLFANNRD----TYQME 1134 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI-------NKRKMEIEVM 452 I+ + E + N + G+ + D + + + Sbjct: 1135 KRYIRKDGE-IVWGHLTVSLVRNAKGKPQFAIGMIQDISDAKRSEAERQIAEEALRENQA 1193 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMN 510 L ++++ + I + NR G N+A++ +G V+++ K + Sbjct: 1194 FLRNVIDTVPNFIFVKNRAGKYTLANQAMANAYGTTVQELEGKSDGDFHLVAAEITLAGT 1253 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEK 568 + SL E+ + E + + DI+E KQ + Sbjct: 1254 DDQQVMNSLQSLLIPEQSLTLANGEVRYFQTIKTPLVSPDGNAHYILGVATDITERKQIQ 1313 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++ A ++ KS F+ VSHE RTPLT+I+G++E + + L + I++ + Sbjct: 1314 QEIEKALAKEKELHKLKSQFIDIVSHEFRTPLTSILGYAE-LLERHSDKLTTEKKIKHLH 1372 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE------K 682 I +G + D++ D+L IS+ ESGK+ + +++ + + I +Q+ + K Sbjct: 1373 NIQMAGQRLSDLIQDVLCISRAESGKLLYNPTLINVADFCQDLIEEIQIGIGQGYEILFK 1432 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + +R + ++ I D + ++ I N+LSN I ++P G ++ +S + N++VI +R Sbjct: 1433 QPNLRPHSSTDL--IYLDEKLLRHILTNLLSNGIKYSPIGSRVELSLQYE-NQQVIFEIR 1489 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ + K F + S GTGLGL + + V+ + G ST GT Sbjct: 1490 DQGIGIPLEDHPKLFDSFYRA--SNVGNIPGTGLGLNIVQKYVNLHGGTIDFTSTVKVGT 1547 Query: 803 LIEIIFPLYDT 813 ++ P+ T Sbjct: 1548 TFKVSLPINKT 1558 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 52/513 (10%), Positives = 143/513 (27%), Gaps = 34/513 (6%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH------IGDLLKRQNTWYGKTTLWP 151 S+E + G + + + + + P++ + L ++ + Sbjct: 418 WSDETYRIFGQDIQQFL---PTENAFFYCLHPDDRELVIKQLNQALYNHKSYKINYRILR 474 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G V + G FG V + ++K H+ Sbjct: 475 PDGEIRIVQTQADVS--FDSQGNPLGM--FGTVQDITDSKLMEQELRESEEKLRHIVTTT 530 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 V + I+ P +++ + L + L P Sbjct: 531 ADGLIVMNQSGYIYFVN---PAAESFFGLNANELSEYQWNFSLNHDSTELAIEHLEGKPI 587 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + + Y +L++ E ++ Sbjct: 588 FLEVKIVETLWDGEPVYLISLRD----------ITERKQAEEALKISEKRYRNLINNLHA 637 Query: 332 PFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 V+ + +N L + + + I+ + Sbjct: 638 GVVVHQADTSIALSNTKANELLELTPEQILGKTAFDLHWCFLRENGTVMPIEEYPVNIVI 697 Query: 391 RTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 T + I + + + + F + N + + + + + +++ Sbjct: 698 STQKPVKNYVIGINRPQSQTVVWLLINAFGEFNSNGQMNQIVVTFVDITEFKQAQEELQE 757 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + ++ +A+ GI + EG L N ++ G + L K ++ ++ N + + Sbjct: 758 SKRRYVTLAQASPVGIFRTDVEGNCLYVNERWQEIAGLTWQQALGKGWSQAIDYNDQTRV 817 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565 + + + + + + + + T+ DI++ K Sbjct: 818 LQEWKQAIINHVP--FQAEYRFQRPDGSVTWVYGQAIAETDEQGILIGFLGTITDINDRK 875 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + KL K E++ ++ L R + ++R Sbjct: 876 EAELKLQRLKDELEQKVEKRTWNLQRANQQLRQ 908 Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 32/277 (11%), Positives = 90/277 (32%), Gaps = 25/277 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEI 362 + E ++ + + + + ++ + + + DI+ Sbjct: 377 DITERKQVEISLRESQDRLAKAQEIAHLGNWEWNFLTHEFFWSDETYRIFG----QDIQQ 432 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 D+ + L ++ + ++ + E + + Sbjct: 433 FLPTENAFFYCLHPDDRELVIKQLNQALYNHKSYKINYRILRPDGE-IRIVQTQADVSFD 491 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + G + D+++ ++++ +L I+ T+DG+ ++N+ G I N A Sbjct: 492 SQGNPLGMFGTVQDITDSKLMEQELRESEEKLRHIVTTTADGLIVMNQSGYIYFVNPAAE 551 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 FG ++ + L ++ + +L LE + + + + + Sbjct: 552 SFFGLNANELSEYQWNFSLNHDSTELAIEHLE-----GKPIFLEVKIVETLWDGEPV--- 603 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 Y +++ DI+E KQ + L ++K Sbjct: 604 -----------YLISLRDITERKQAEEALKISEKRYR 629 Score = 105 bits (262), Expect = 4e-20, Method: Composition-based stats. Identities = 48/513 (9%), Positives = 129/513 (25%), Gaps = 51/513 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D + + G ++ + + D IG L + Sbjct: 290 TDEQKNFTYVCPNVETIFGYSCQEIQTMKTIEKLLGENLFD----IGQLESCGEIPNIEQ 345 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G V +++ + ++ + + + Sbjct: 346 KITDKSGKTHVVLVNV--KRVSINEGKY-----LYTCRDITERKQVEISLRESQDRLAKA 398 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA------HKDDVLKTEKYPL 261 EI + F + ++ L A D L ++ Sbjct: 399 QEIAHLGNWEWNFLTHEFFWSDETYRIFGQDIQQFLPTENAFFYCLHPDDRELVIKQLNQ 458 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 S + + ++ + S ++ Sbjct: 459 ALYNHKSYKINYRILRPDGEIRIVQTQADVSFDSQGNPLGMFGTVQDITDSKLMEQELRE 518 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + E + + L N S + + + S N+ Sbjct: 519 SEEKLRH----IVTTTADGLIVMNQSGYIYFVNPAAESFFGLNANELSEYQWNFSLNHDS 574 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + I ++ W+ E ++ + + + Sbjct: 575 TELAIEHLEGKPIFLEVKIVETLWDGEPVYLISLR-------------------DITERK 615 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---FT 498 + ++I + +++ G+ + + I +N ++L E IL K Sbjct: 616 QAEEALKISEKRYRNLINNLHAGVVVHQADTSIALSNTKANELLELTPEQILGKTAFDLH 675 Query: 499 VFLEQNT---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + + + ++S I + + + ++ L I S+ Sbjct: 676 WCFLRENGTVMPIEEYPVNIVISTQKPVKNYVIGINRPQSQTVVWLLINAFGEFNSNGQM 735 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 +T DI+E+KQ + +L +K+ + Sbjct: 736 NQIVVTFVDITEFKQAQEELQESKRRYVTLAQA 768 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 15/166 (9%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 +++ + ++ + IL SD + + + + V +FGY Sbjct: 252 FAVRGAAELERQQAEKTLRDSQQFYQLILSNISDAVLMTDEQKNFTYVCPNVETIFGYSC 311 Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++I K L +N + ++ S +E+ + + ++ + + + Sbjct: 312 QEIQTMKTIEKLLGENLFD-----IGQLESCGEIPNIEQKITDKSGKTHVVLVNVKRVSI 366 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 Y T DI+E KQ + L ++ K ++H Sbjct: 367 -NEGKYLYTCRDITERKQVEISLRESQDRLAKAQE--------IAH 403 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 30/297 (10%), Positives = 77/297 (25%), Gaps = 27/297 (9%) Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351 + + + + + + + N Y P+ + Sbjct: 247 EILRIFAVRGAAELERQQAEKTLRDSQQFYQLILSNISDAVLMTDEQKNFTYVCPNVETI 306 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 Y S +I+ + LL + + +C I + Sbjct: 307 FGY-SCQEIQTMKTIEKLL----------GENLFDIGQLESCGEIPNIEQKITDKSGKTH 355 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + + + + + +L E G N E Sbjct: 356 VVLVN---VKRVSINEGKYLYTCRDITERKQVEISLRESQDRLAKAQEIAHLG----NWE 408 Query: 472 GIIL----STNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 L + ++FG ++ L F L + ++ L + L + Sbjct: 409 WNFLTHEFFWSDETYRIFGQDIQQFLPTENAFFYCLHPDDRELVIKQLNQALYNHKSYKI 468 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L E +++ + + + T+ DI++ K + +L +++ Sbjct: 469 NYRILRPDGEIRIVQTQADVSFDSQGNPLGMFGTVQDITDSKLMEQELRESEEKLRH 525 >gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 1749 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 111/741 (14%), Positives = 259/741 (34%), Gaps = 36/741 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWY 144 + +D ++ + + +++G + + + ++ Sbjct: 1024 IYVMDLQNRFILVNRQYEQLFHTTQSEIVGKSVYETWPNDIAHQYAFNNRQVITTGMAIE 1083 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +G + Y+ I P+ RN + GI R K Sbjct: 1084 VEEVVPHEDGLHTYLSIKF---PLKDRNGIV--YAMCGISTDITERKLAEDSLLRFHKAM 1138 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + Y S Q + + + + + + ++ Sbjct: 1139 ESTSDAIIFGDIFNISNYTNPSFQELYGYNLEQLQAAGGVCTVFQEPQKQQEIMARVMKG 1198 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E S + + + + +++++ + + + +EG L Sbjct: 1199 E--SWRGEVAMRSRDGSLLQVDLRSDAIRDSNGKIIGTVCIHTDITKRQQVEEGLKLRDR 1256 Query: 325 TVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +D + + Y NP+F +T Y S + I L + + Sbjct: 1257 AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNF---RLFQSADIDQLGL 1313 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + L + + A + L + + + L +Q + GI+ + + Sbjct: 1314 RE---LSTAMQAGKACTVILRNYRKDG-SLLWNELNISPVYDQTGQLTHYIGIQTDITER 1369 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKP-- 496 + + + + +L +L ++ I G + + ++ + GYP ++ Sbjct: 1370 KQAETALLVSQQRLQYLLTSSPAVIYTCKTCGDFGSIFVSDNITTITGYPAQEFTENSDF 1429 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552 ++ + + L+ +L + + K+ + + + + Sbjct: 1430 WSNHIHPEDAPAILRKLSSVLE---EEIYKLEYRFLHKDGTYHWIYDQGRVVKDDTNNPV 1486 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ KQ + L A + ++ S KS F++ SHE RTPL+ I+ SE + Sbjct: 1487 EMVGYLIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSE-LLE 1545 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + + I + + +++ND+L I K E+GK+ P+ + + Sbjct: 1546 HYRHKWTEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLV 1605 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +QL N +++ + + D + + I +N++SNAI ++P+ + + Sbjct: 1606 EEIQLNLNNQQVNFISE--HQSMSCCMDEKLLGHILINLISNAIKYSPANSNVQVKFYCR 1663 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V+D G+G+ ++ + F + N GTGLGL + K VD + G+ Sbjct: 1664 DR-CAVFEVQDWGIGIPAEDITHLFESFYRAKNVGN--ILGTGLGLAIVKKCVDIHQGEI 1720 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 + S P GTL + PL + Sbjct: 1721 SVSSNPEVGTLFTVNIPLKQS 1741 Score = 177 bits (448), Expect = 1e-41, Method: Composition-based stats. Identities = 64/508 (12%), Positives = 165/508 (32%), Gaps = 34/508 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144 W +D + +S ++ +G +++G D+ + I + Q + Sbjct: 897 VWEVDENAIYTYVSPKVKDILGYEPQELLGRSPLDMMPPTEAERVIKIFTSFMAAQQPFK 956 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +G + + + + +P++ +F G+RG + + ++ Sbjct: 957 CLENTNVRKDGCLVVL--ETSGVPVFDAEGKFCGYRGMD--RDITARKEVETNLYQTQQQ 1012 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKY 259 + + V + H V D Sbjct: 1013 LQVILDNSPAIIYVMDLQNRFILVNRQYEQLFHTTQSEIVGKSVYETWPNDIAHQYAFNN 1072 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + ++ +E + +T L++ + + + ++ Sbjct: 1073 RQVITTGMAIEVEEVVPHEDG-LHTYLSIKFPLKDRNGIVYAMCGISTDITERKLAEDSL 1131 Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + ++ N+ Y NPSF L Y +++ ++ AGG+ T+ P+ Sbjct: 1132 LRFHKAMESTSDAIIFGDIFNISNYTNPSFQELYGY-NLEQLQAAGGVCTVFQEPQ---- 1186 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + +M ++ + L + + + + I + Sbjct: 1187 -KQQEIMARVMKGESWRGEV---AMRSRDGSLLQVDLRSDAIRDSNGKIIGTVCIHTDIT 1242 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRK 495 + + +++ ++A+S+GI I + I+ N A ++ GY ++++ + Sbjct: 1243 KRQQVEEGLKLRDR----AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQ 1298 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 F +F + + L+ + T+ I K+ LL + I + + Sbjct: 1299 NFRLFQSADIDQLGLRELSTAMQAGKACTV--ILRNYRKDGSLLWNELNISPVYDQTGQL 1356 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAE 579 Y DI+E KQ + L +++ + Sbjct: 1357 THYIGIQTDITERKQAETALLVSQQRLQ 1384 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 59/569 (10%), Positives = 135/569 (23%), Gaps = 66/569 (11%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 SE F F + W GY++ +++ + GN ++G + Sbjct: 588 SEERFRFLAESIPQQ-VWIAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPDDRPH 646 Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 I W Y AL + FG Sbjct: 647 CLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNII--NWFGTNTDIDD 704 Query: 190 DNDPRALG--KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + F + S ++ + ++ L + Sbjct: 705 RKQTEEALAERVKLSDFRSEVDTILTQSYTLQDLMRGSADAVVKHLNAAFARIWILNKQE 764 Query: 248 AHKDDVLKTEKYPLLTSEESSLP----------------------------------EQE 273 + + + +Y L +P ++ Sbjct: 765 NLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQVGKPHLTNCVQTDPLISNPEWVKQEG 824 Query: 274 DFHTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRN--------HPSLSAYFDEGEN 320 + + G + Q S+ F+ L A E Sbjct: 825 MVAFAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHSEE 884 Query: 321 LTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V+ + + Y +P + Y+ + + + Sbjct: 885 RFRNLVETSSDWVWEVDENAIYTYVSPKVKDILGYEPQELLGRSP------LDMMPPTEA 938 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + +T + + + + G++ + Sbjct: 939 ERVIKIFTSFMAAQQPFKCLENTNVRKDGCLVVLETSGVPVFDAEGKFCGYRGMDRDITA 998 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + + QL IL+ + I +++ + + NR +LF +I+ K Sbjct: 999 RKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILVNRQYEQLFHTTQSEIVGKSVYE 1058 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---- 555 + ++++ + +E + ++ L I L + Sbjct: 1059 TWPNDIAHQYAFNNRQVITTGMA--IEVEEVVPHEDGLHTYLSIKF-PLKDRNGIVYAMC 1115 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH 584 DI+E K ++ L K E S Sbjct: 1116 GISTDITERKLAEDSLLRFHKAMESTSDA 1144 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 52/529 (9%), Positives = 134/529 (25%), Gaps = 62/529 (11%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEG 154 + + G+ + IG + + + + + L + G Sbjct: 193 IFFNNAWLELTGSTLEQEIGKNWSERVHPEDLQGFLDAYLQAFYTHQFFSVEYRLLGLNG 252 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 Y+ + +P ++ N +F+G+ I A + + E Sbjct: 253 E--YLWLLNIGVPKFTSNGDFAGYINSCI--DITEHKQYFAALEESTNRLKLALEATNTI 308 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTS------- 264 D +P ++ L ++ + + T + + Sbjct: 309 YWERNLSNDQLFFLNPVVEFGDSEGLTNSKVLAFFHPEDRERVDTAAQEAIANCSCLEIE 368 Query: 265 ----------------------------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + D Q +Q L+ Sbjct: 369 HRLPVAGQPSKYKWFLSKSTVLTDTTGKPSRMIGISTDITDRVEAQDALEQANQELERRV 428 Query: 297 KESFEYLS---------HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346 + L + + + + +D P + + N Sbjct: 429 AKRTLALQKANRQLLAEISDRQIAQEQLRQSQQMLQLVMDTIPHSVFWKDRNSVFLGCNR 488 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 +F ++ Y+ +++ L P+ +D + ++ + + Sbjct: 489 NFAIMVGYEHPENLIGKTDYD-FLPDPRNADLYRQCDARIIETNNPEYHI---IEPMLAP 544 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + G + + + + +E + + E+ + Sbjct: 545 DGQQIWLETNKVPLHDPEGNVVGVLGTFEDITERKQVQEALEKSEERFRFLAESIPQQVW 604 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I +G I N+ + FG E IL + ++ + ++ +E Sbjct: 605 IAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPDDRPHCLEIWQHCVATGEPLDVE 664 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 T ++ L S + T DI + KQ + L Sbjct: 665 F-RWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDIDDRKQTEEAL 712 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 50/553 (9%), Positives = 138/553 (24%), Gaps = 58/553 (10%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSD-ILHIDPNNH-IGD 135 W D + + +G + +IG D + D Sbjct: 468 DTIPHSVFWK-DRNSVFLGCNRNFAIMVGYEHPENLIGKTDYDFLPDPRNADLYRQCDAR 526 Query: 136 LLKRQNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 +++ N Y + +G + ++ +P++ G G + Sbjct: 527 IIETNNPEYHIIEPMLAPDG--QQIWLETNKVPLHDPEGNVVGVLG--TFEDITERKQVQ 582 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKD 251 ++ +++F L E + + I ++ + + + H D Sbjct: 583 EALEKSEERFRFLAESIPQQVWIAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPD 642 Query: 252 DV--LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 D + + E E T + L+++ + Sbjct: 643 DRPHCLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDI 702 Query: 310 SLSAYFDEGENLTPETVD-------------KCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 +E + D + + + N +F + Sbjct: 703 DDRKQTEEALAERVKLSDFRSEVDTILTQSYTLQDLMRGSADAVVKHLNAAFARIWILNK 762 Query: 357 VDDIEIAGGLSTLLDA-PKLSDNNAIKPVML-------------------------YRSD 390 +++ S + + + Sbjct: 763 QENLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQVGKPHLTNCVQTDPLISNPEWVKQ 822 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 +A + ++ +AM + F + + + + Sbjct: 823 EGMVAFAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHS 882 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + +++E +SD + ++ I + V + GY +++L + + + Sbjct: 883 EERFRNLVETSSDWVWEVDENAIYTYVSPKVKDILGYEPQELLGRSPLDMMPPTEAERVI 942 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566 T ++ K+ L+ L + + Y DI+ K+ Sbjct: 943 KIFTSFMAAQQP-FKCLENTNVRKDGCLVVLETSGVPVFDAEGKFCGYRGMDRDITARKE 1001 Query: 567 EKNKLSHAKKIAE 579 + L ++ + Sbjct: 1002 VETNLYQTQQQLQ 1014 Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 49/453 (10%), Positives = 122/453 (26%), Gaps = 72/453 (15%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAH 249 P+ + +K + + + ++ ++ H Sbjct: 161 PQDAIEASEKSLWRVANTAPILIWISATDTSCIFFNNAWLELTGSTLEQEIGKNWSERVH 220 Query: 250 KDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 +D+ L + +N ++ + Y++ Sbjct: 221 PEDLQGFLDAYLQAFYTHQFFSVEYRLLGLNGEYLWLLNIGVPKFTSNGDFAGYINSCID 280 Query: 309 PSLS----AYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEI 362 + A +E N ++ ++ S+ LF+ NP + ++ + + Sbjct: 281 ITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNP----VVEFGDSEGLTN 336 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + L+ + + A + ++ +C+ RL + + Sbjct: 337 SKVLAFFHPEDRERVDTAAQE---AIANCSCLEIEHRL-PVAGQPSKYKWFLSKSTVLTD 392 Query: 423 QFPENMPQNGIEPEDVDT---------------------------------------RIN 443 + GI + D +I Sbjct: 393 TTGKPSRMIGISTDITDRVEAQDALEQANQELERRVAKRTLALQKANRQLLAEISDRQIA 452 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502 + ++ L +++ + +R + L NR + + GY E+++ K FL Sbjct: 453 QEQLRQSQQMLQLVMDTIPHSVFWKDRNSVFLGCNRNFAIMVGYEHPENLIGKTDYDFLP 512 Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + I+ + + + + + + L L T Sbjct: 513 DPRNADLYRQCDARIIETNNPEYHIIEPML-APDGQQIWLETNKVPLHDPEGNVVGVLGT 571 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 DI+E KQ + L ++S + FLA Sbjct: 572 FEDITERKQVQEAL--------EKSEERFRFLA 596 Score = 74.7 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 41/336 (12%), Positives = 91/336 (27%), Gaps = 37/336 (11%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E + PI ++ + + N ++L LT +++ + Sbjct: 164 AIEASEKSLWRVANTAPILIWISATDTSCIFFNNAWLELTG-STLEQEIGKNWSERVHPE 222 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 +A + RL + L + I K + Sbjct: 223 DLQGFLDAYLQAFYTH---QFFSVEYRLLGL---NGEYLWLLNIGVPKFTSNGDFAGYIN 276 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVED 491 + + + +E +L LEAT+ N + N V FG E Sbjct: 277 SCIDITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNPVVE--FG-DSEG 333 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + F ++ E ++ +E + + K L + Sbjct: 334 LTNSKVLAFFHPEDRERVDTAAQEAIANCSCLEIEHRLPVAGQPSKYKWFLSKSTVLTDT 393 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + DI++ + ++ L A + E+ + ++ Sbjct: 394 TGKPSRMIGISTDITDRVEAQDALEQANQELERRVAKRT------------------LAL 435 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 + Q + + + A R +L +V D Sbjct: 436 QKANRQLLAEISD---RQIAQEQLRQSQQMLQLVMD 468 Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 12/200 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + +E L + I I + + N A +L G +E + K ++ + Sbjct: 162 QDAIEASEKSLWRVANTAPILIWISATDTSCIFFNNAWLELTGSTLEQEIGKNWSERVHP 221 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMH 559 + ++E LG + L L I + Y + Sbjct: 222 EDLQGFLDAYLQAFYTHQFFSVEYRLLGL--NGEYLWLLNIGVPKFTSNGDFAGYINSCI 279 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL--ARVSHE---IRTPLTAIIGFSEVIKNQR 614 DI+E KQ L + + + +S++ P+ G SE + N + Sbjct: 280 DITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNPV-VEFGDSEGLTNSK 338 Query: 615 FGPLGNPRYIEYANYIDRSG 634 +P E + + Sbjct: 339 VLAFFHPEDRERVDTAAQEA 358 >gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1416 Score = 375 bits (964), Expect = e-101, Method: Composition-based stats. Identities = 109/641 (17%), Positives = 232/641 (36%), Gaps = 40/641 (6%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 ++D R KRL + + + G ++++ + + + + L E Sbjct: 648 ADDNSDMRDYVKRLLSQQYEVESVADGLAALDSARGRVPDLVLTDVMMPGLDGFGLLQEL 707 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--- 303 A+ + E + E + + + + +L Sbjct: 708 RANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAALKMAHLREE 767 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 + + L + + + FFV + + N + + + ++ Sbjct: 768 AMQREQGLRIEAEVAKAHLETVLAGIQDQFFVLDREWHYTFVNDRVAEVVGIQKEELLDR 827 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKA 421 + L P ++ + V +++T + +W Sbjct: 828 I--IWELF--PDVAKSEFYTQVHRAMAEQTVVQFEYFYPAWQRWFENRVY---------- 873 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 P + E D + ++ + Q ++ + + + + +R+ Sbjct: 874 ---PFGEGVSIFVTEISDRKQAEKALRESEEQFRNMADNAPFMVWVTDTNNYCTYLSRSW 930 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 G+ E L + + + + + + + K+ + Sbjct: 931 YDFTGHNEETSLGFGWLNAVHPEDCDEVRNIF--LEASKRCEAFRMEYRLHRKDGEYRWT 988 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLA 590 Y ++ DI+E K + + A+ AE + K +FLA Sbjct: 989 INAANPWFGVDGQFKGYIGSVIDITERKTAEAERDRLLELEQVARTEAETANRIKDEFLA 1048 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+R+PL I+G++ +++ + F P + I+R+ L ++ DLLD+S+I Sbjct: 1049 VLSHELRSPLNPILGWARLLQTREFQP---AEIKKAIATIERNAKLQAQLIEDLLDVSRI 1105 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 GK+NL PV+L + + V+L A K I I+T ++ ++L D ++Q+ N Sbjct: 1106 LQGKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWN 1165 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNA+ FTP G+I I + + + V DTG G++ L + F Q + R Sbjct: 1166 LLSNAVKFTPEEGKINIQLERIDS-QAQITVSDTGKGISPEFLPHVFEYFRQADGTTTRR 1224 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 G GLGL + + +++ + G + S +G + + PL Sbjct: 1225 FGGLGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLPL 1265 Score = 263 bits (672), Expect = 9e-68, Method: Composition-based stats. Identities = 102/569 (17%), Positives = 195/569 (34%), Gaps = 61/569 (10%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYK 355 E+ ++ + + + + C P FV+ L N + + K Sbjct: 24 ARMREWDWSKSSLGPTQQWPQSLKTAVRIMLTCRQPMFVWWGEELINLYNDPYKAIIGGK 83 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + S + + ML A + + E ++ Sbjct: 84 HPEALGQP--ASCVWREIWDQIGPRAESAMLKNEGTYDEALLLIMERNGYPEETYYTFSY 141 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKR------KMEIEVMQLCSI----------LE 459 P N + +D I +R ++ + LE Sbjct: 142 SPVP--NDQGDTGGIICANTDDTQRIIGERQLALLRELAARTADARTFDQACTLSANCLE 199 Query: 460 ATS-----DGIAIINREGIILST--------NR-AVSKLFGYPVEDILRKPFTVFLEQNT 505 + I +++ + + N A + + + PF + + Sbjct: 200 SNPYDLPFAMIYLVDPDEQQVFLTGTCRIGQNHVAAPETVDLDSDCVW--PFAEVI-ETH 256 Query: 506 PSVMNHYLTEILSLDLRQTLEKITL----------GSTKEEKLLSLRIIIKKLPFSSCYS 555 + + L S E+ G T + +L + +L + Sbjct: 257 QAKLISDLEVSFSSLPCGIWERSPHQAIAVPIAPSGQTGKAGILIAGLNPFRLFDDN--Y 314 Query: 556 LTMHDISEWK--------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 D+ + Q + + + K+ F + VSHE RTPLT ++G Sbjct: 315 KRFIDLVAAQIAASIANAQAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPL 374 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E L E + R+G +L +VN LLD S+IE+G++ +EP +L Sbjct: 375 EETLANC-ATLLPAHEREQLEMVQRNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATF 433 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +E S+ + + + + + + D ++I LN+LSNA FT +G +I + Sbjct: 434 TAELASVFRSAVERAGMELSVNCPSLPAPVYVDREMWEKIVLNLLSNAFKFTMTG-KIAV 492 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S +N+ + V+DTG+G+ E+ K F ++ +Q EG+G+GL L + +V Sbjct: 493 SLQW-ANDHIEFAVKDTGIGIPAEEIPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQM 551 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G + S G+ I P P Sbjct: 552 HGGTVKVTSVLGAGSCFTISIPTGYAHLP 580 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 45/370 (12%), Positives = 89/370 (24%), Gaps = 17/370 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 T+ + + +SE F W D + Y +S G+ + Sbjct: 884 TEISDRKQAEKALRESEEQFRNMADNAPF-MVWVTDTNNYCTYLSRSWYDFTGHNEETSL 942 Query: 115 GMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + D +I + KR + + L +G Y AA P + + Sbjct: 943 GFGWLNAVHPEDCDEVRNIFLEASKRCEAFRMEYRLHRKDGE--YRWTINAANPWFGVDG 1000 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 +F G+ G I A RL + + + ++ E + S + P Sbjct: 1001 QFKGYIGSVI--DITERKTAEAERDRLLELEQVARTEAETANRIKDEFLAVLSHELRSPL 1058 Query: 234 LRMKN-----KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + K L L + LN Sbjct: 1059 NPILGWARLLQTREFQPAEIKKAIATIERNAKLQAQLIEDLLDVSRILQGKLNLKMFPVN 1118 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---- 344 + E+ + + D D+ + + + Sbjct: 1119 LVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLLSNAVKFTPEEG 1178 Query: 345 --NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 N + + + G+S R + + H Sbjct: 1179 KINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQADGTTTRRFGGLGLGLAIVRHL 1238 Query: 403 IQWNRENSLA 412 I+ + A Sbjct: 1239 IELHGGTIWA 1248 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 32/378 (8%), Positives = 93/378 (24%), Gaps = 34/378 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D + +++ + + +G +++ + ++ + + + + T Sbjct: 800 LDREWHYTFVNDRVAEVVGIQKEELLDRIIWELFPDVAKSEFYTQVHRAMA-EQTVVQFE 858 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +P + P G F V + +++F ++ Sbjct: 859 YFYP----AWQRWFENRVYPFG------EGVSIF--VTEISDRKQAEKALRESEEQFRNM 906 Query: 208 HEIKKGHSSVEKE----KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + V Y S H + +D + + Sbjct: 907 ADNAPFMVWVTDTNNYCTYLSRSWYDFTGHNEETSLGFGWLNAVHPEDCDEVRNIFLEAS 966 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + H + + Y+ + + + Sbjct: 967 KRCEAFRMEYRLHRKDGEYRWTINAANPWFGVDGQFKGYIGSVIDITERKTAEAERDRLL 1026 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 E FL + ++ + G + LL + K Sbjct: 1027 ELEQ-----VARTEAETANRIKDEFLAVLSHELRSPLNPILGWARLLQTREFQPAEIKKA 1081 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + I +A+L + + + P N + + Sbjct: 1082 IA-------TIERNAKLQAQLIED----LLDVSRILQGKLNLKMFPVNLVLVIEAGLETV 1130 Query: 444 KRKMEIEVMQLCSILEAT 461 + E + +Q+ ++L+A+ Sbjct: 1131 RLAAEAKDIQIQTMLDAS 1148 Score = 39.2 bits (90), Expect = 3.1, Method: Composition-based stats. Identities = 42/398 (10%), Positives = 98/398 (24%), Gaps = 35/398 (8%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDLLKRQ 140 F W + ++ IG + +G ++ D + +LK + Sbjct: 61 FVWW--GEELINLYNDPYKAIIGGKHPEALGQPASCVWREIWDQIGPRAE---SAMLKNE 115 Query: 141 NTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 T+ + G + P+ + + G I+ N D ++ Sbjct: 116 GTYDEALLLIMERNGYPEETYYTFSYSPVPNDQGDTGG-----IICANTDDTQRIIGERQ 170 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE--YYAHKDDVLKTE 257 L L + ++ + P+ + + + Sbjct: 171 LA-LLRELAARTADARTFDQACTLSANCLESNPYDLPFAMIYLVDPDEQQVFLTGTCRIG 229 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEYLSHRNHPSLSA 313 + + E L + + + + + L+ + +E H+ A Sbjct: 230 QNHVAAPETVDLDSDCVWPFAEVIETHQAKLISDLEVSFSSLPCGIWERSPHQAIAVPIA 289 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY----------ANPSFLLLTKYKSVDDIEIA 363 + P F ++ AN + K + + Sbjct: 290 PSGQTGKAGILIAGLNPFRLFDDNYKRFIDLVAAQIAASIANAQAYEE-ERKRAEALAEL 348 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 T+ + + +ML +A A L RE + Sbjct: 349 DRAKTVFFSNVSHEFRTPLTLML-GPLEETLANCATLLPAH-EREQLEMVQRNGLRLLKL 406 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + IE V + +L S+ + Sbjct: 407 VNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSA 444 >gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 565 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 122/571 (21%), Positives = 228/571 (39%), Gaps = 40/571 (7%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L + + ++ Q + S + L E E Sbjct: 5 RLRIKPGPESVPFKRRAVLSRLRSRISELELAQKEANASRDALMATTR-----ALRESEE 59 Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + ++ Y + L + + E S D+ Sbjct: 60 RYALAMRGPNEGLWDWNPITKELYLSARLLAILGFSG----ETVRTTSHDWLKMVHPDDR 115 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 L + + + ++ + ++ G + D Sbjct: 116 VPYQSTLVQHLKGQTDHFECEYRVRGRNGEYRWILSRGLAVRDENGVATRMVGSIGDVTD 175 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + + + S++EA + I ++ +G + NR ++FG + + ++ Sbjct: 176 RKRREAVLRASEARFRSLVEAAASIIVVVGADGRVREFNREAERMFGLSAAAAIGRAWST 235 Query: 500 FLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 L+ + +L E+ Q ++ T+ + + + + L Sbjct: 236 ILDSNRVGQDGDRFDQWLDEVRKG--WQVRDRETVL----GQHI-ISWNLAPLSDDDGIV 288 Query: 556 LTMHDISEWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVSHEIR 597 + DI++ ++ + L A + AE+ + KS+FLA +SHE+R Sbjct: 289 IVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHELR 348 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AIIGFS+ ++ GP+ NP Y EY I SG +L I+ND+LD+SK+E+G +L Sbjct: 349 TPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHFDL 408 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E + L + I L+ A R+ +R + L D +KQ+ N+L+NA+ Sbjct: 409 APERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANAVK 468 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FTP+GG +I+S ++V D+G+GM ++++ ++PF QI + R GTGLG Sbjct: 469 FTPAGGHVILSLGRDDGGSW-IKVADSGIGMRPEDIDRVLEPFVQIDSHLSRRNMGTGLG 527 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LPLAK ++ + G + S P +GT++ I Sbjct: 528 LPLAKRFIELHGGTLALASQPGQGTVVTIRL 558 Score = 45.8 bits (107), Expect = 0.030, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 12/139 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + A G ++E + E + G A IG + D + + R + W + Sbjct: 204 VGADGRVREFNREAERMFGLSAAAAIGRAWSTILDSNRVGQDG------DRFDQWLDEVR 257 Query: 149 L-WPIEGTNLYV---PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 W + + I P+ + G I R + R L+ + Sbjct: 258 KGWQVRDRETVLGQHIISWNLAPLSDDDGIVI--VGQDITQRRRAETALRQANDLLEYRV 315 Query: 205 SHLHEIKKGHSSVEKEKYD 223 + + +E Sbjct: 316 AARTAEAEAACRQAEEANR 334 >gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 728 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 184/730 (25%), Positives = 317/730 (43%), Gaps = 70/730 (9%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIE 153 + S+ + G A +++ R +D + + + + + Sbjct: 48 VAFASQAMLDLFGVTALEILRHRFFQPADPGF----GRLAEIAADATQSLRLARLRFFVN 103 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G ++ L + + +A RL + + Sbjct: 104 GKSIVRTFWCGTLERQG--------------RRMTLIAEAQAYRSRLVLQQQARPRQEPV 149 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + + D + R + L + + E LL LPE+ Sbjct: 150 VALLADPLPDDMAIVRADLARRFPGER-PLRFLWRTDGEHRLVEIGSLLAEVTGLLPEKW 208 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + T+ + + E + + L+ + + P Sbjct: 209 VGGPFSSLLRAFDPTAATMTDWIFAACEGV---DDLKLAWPIEGRTVAVDIALGGLPR-- 263 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 N + + L+ L P+ + + Sbjct: 264 ------RDAAGNFAGYQGFG------LIHKDRLTARLLEPQEEEEG-----------QAL 300 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 A + E F + ++ + + R E EV + Sbjct: 301 SPVLAETRGVIDAGEP-----VSAFPRTDETAQGPVEGERAARQALEARMHRY-ESEVRE 354 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +IL+ +DG+A+++ EG IL+ NR+ LFGY ++L +PFT+ + + Y Sbjct: 355 LHAILDTATDGVAVLDAEGRILTLNRSGEALFGYDRGEVLSQPFTMLIAPASRRRAMDYF 414 Query: 514 TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLP--------FSSC----YSLTMH 559 + + + L + G ++ + + + + ++ Y + + Sbjct: 415 EGVKTGGVLSLLNDGREIFGLARQGGTIPIFMTLGRIGLFVTAETMPEQGVFEKYCVLLR 474 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+S WK+ + +L A+K AE+ S+ KSDFLA+VSHEIRTPL AI+GF+EVI ++RFGP+G Sbjct: 475 DMSHWKKIERELEAARKEAERASTLKSDFLAKVSHEIRTPLNAILGFTEVIMDERFGPIG 534 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N RY +Y I SG LV+ +VNDLLD+SKIE+GKM+L F V ++ +++ +SL+Q A Sbjct: 535 NERYKDYLKDIHMSGTLVMSLVNDLLDLSKIEAGKMDLDFVAVDTNQIIADCVSLMQPQA 594 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 N + IL+R + A +P +LAD RS++QI LN+LSNA+ FT GGQ++++T + + ++ Sbjct: 595 NREGILVRLALAPALPPLLADERSLRQIVLNLLSNAVKFTEPGGQVMVATKLMEDGKTLI 654 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 R+RDTG GM+ E+ A++PF Q+ S +GTGLGLPL KA+V+AN F I S Sbjct: 655 RIRDTGAGMSEEEIGIALEPFRQL--STSRSNQGTGLGLPLTKALVEANRASFSISSKKQ 712 Query: 800 KGTLIEIIFP 809 +GT++EI+FP Sbjct: 713 EGTVVEILFP 722 Score = 116 bits (291), Expect = 2e-23, Method: Composition-based stats. Identities = 48/349 (13%), Positives = 98/349 (28%), Gaps = 7/349 (2%) Query: 49 FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 Q + + + + + P R +RF W D L EI L + G Sbjct: 144 PRQEPVVALLADPLPDDMAIVRADLARRFPGERPLRFLWRTDGEHRLVEIGSLLAEVTGL 203 Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 K +G + + WPIEG + V I L LP Sbjct: 204 LPEKWVGGPFSSLLRAFDPTAATMTDWIFAACEGVDDLKLAWPIEGRTVAVDIALGGLPR 263 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH--LHEIKKGHSSVEKEKYDIFS 226 F+G++GFG++H +R+ + + + L E + + E + Sbjct: 264 RDAAGNFAGYQGFGLIHKDRLTARLLEPQEEEEGQALSPVLAETRGVIDAGEPVSAFPRT 323 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + + E H+ + E + +L + + + I + + Sbjct: 324 DETAQGPVEGERAARQALEARMHRYESEVRELHAILDTATDGVAVLDAEGRILTLNRSGE 383 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFY 343 FG + + A T + F + G Sbjct: 384 ALFGYDRGEVLSQPFTMLIAPASRRRAMDYFEGVKTGGVLSLLNDGREIFGLARQGGTIP 443 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSD 390 + + + + + + G L + + R + Sbjct: 444 IFMTLGRIGLFVTAETMPEQGVFEKYCVLLRDMSHWKKIERELEAARKE 492 >gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1028 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 120/399 (30%), Positives = 199/399 (49%), Gaps = 9/399 (2%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 F E +D R+N K++ + + IL + S+ + ++ E Sbjct: 319 FSAHCIMEGDDELSRLTEGINRMLDRLRLNSDKVKAQEHEKKVILNSLSELVIFMDLELK 378 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 I+ NRA G +E+I+ + + + L +T E + T Sbjct: 379 IVWANRASLDYAGLKLENIVGHSYEKLSPISDAVSGRALAQKALESGNEETGEVV----T 434 Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + K+ ++R+ + K + T DI+ ++ + KL AK AE S KS+FLA Sbjct: 435 PDGKIWTIRMNLIKDEDGKVTGFLQTGLDITAHRRSEEKLLQAKLEAEAASCTKSEFLAN 494 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL +IIGFS+++ + FG L N + ++Y N I SG +L ++ND+LD+SK+E Sbjct: 495 MSHELRTPLNSIIGFSDILIERVFGEL-NEKQLKYVNNISGSGKHLLGLINDILDLSKVE 553 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GKM+LH+ ++D E S + A K + I + I AD + QI N+ Sbjct: 554 AGKMDLHYSEFTVDSVFEEVKSTLFPLAQAKSLEINFVVGPDFGDIQADRSRLIQILYNL 613 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 +SNAI FTP GG++ + + + V DTG+G+++ + +K +PF QI +S + Sbjct: 614 VSNAIKFTPEGGRVSVYCKKS-GSRALFSVTDTGIGISSEDQKKLFQPFTQIDSSSARQY 672 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L K +V+ + G ++ S KG+ PL Sbjct: 673 CGTGLGLALVKKIVNLHKGDIWVESELEKGSTFMFTIPL 711 Score = 45.8 bits (107), Expect = 0.031, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 36/138 (26%), Gaps = 9/138 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKT 147 +D + + G ++G +S I + L+ N G+ Sbjct: 373 MDLELKIVWANRASLDYAGLKLENIVGHSYEKLSPISDAVSGRALAQKALESGNEETGEV 432 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + ++L I + + +GF G+ + + Sbjct: 433 VT--PDGKIWTIRMNL----IKDEDGKVTGFLQTGL--DITAHRRSEEKLLQAKLEAEAA 484 Query: 208 HEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 485 SCTKSEFLANMSHELRTP 502 >gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH 1] Length = 1739 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 131/763 (17%), Positives = 281/763 (36%), Gaps = 48/763 (6%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQN 141 + W +A G ++ S + G + +G+ DV + + D + + Sbjct: 856 AQIVWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDR 915 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + L G Y + P + + R G+ R + Sbjct: 916 PLVLEYRLRNRHGE--YRWFQVRTAPQRRPDGTVN--RWVGMNIDIHDQKQSRLELADRE 971 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + G V + +S +++V + A + Sbjct: 972 AHLRRVINNQLGLVGVIDRNGLLLEVDDRSLEYARVNRHEVIGKPFHEAPWWNYDPNVAQ 1031 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYF-----GTLQNNSKES----FEYLSHRNHPS 310 + + E + + + ++L + + ++ + R+ Sbjct: 1032 QMRDAMERAFKGEPVRYDVSLFAHGDDGVLIDFMIAPVFDDDGNIEYLIPSGVDIRDRKK 1091 Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E + + G + N + + Y VD++ + ++ L Sbjct: 1092 AELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYG-VDELTGSN-INAL 1149 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + P+ S+++ I R T + ++ ++ E + Sbjct: 1150 IPEPEHSEHDGYLKAYEETGQSHII-GHQRQVTGRRKDGSTFSLDLSVSETSLSGEH--R 1206 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 GI + D +++ + ++ L A + + + +LFG Sbjct: 1207 YVGIVRDVSDRVRSEQAKKNASRRMQMALRAGGMAAWEWTPKK--SYWTKEMYELFGVTD 1264 Query: 490 EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RI 543 + P + + + E + + Q E + ++ + + Sbjct: 1265 DR-KGSPELCFSLTHPDDVESLKRHWQEAIEGN--QDYEYEFRIVRPDGEMRWITGMGEV 1321 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + K + D ++ + L +++ A + S+ KS FLA +SHEIRTP+TAI Sbjct: 1322 VRGKSGNVTRMYGVNWDSTQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAI 1381 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G++E++++ + + + + I R+G+ +LDI+ND+LD+SKIE+GK+++ E Sbjct: 1382 LGYAELLQD----IIQDTEGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFD 1437 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 + + S++++ A E + + + IP I +D + +KQ+ +N++ NAI FTP G Sbjct: 1438 PAHLIEDVRSIMEVRAKEAGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPEG 1497 Query: 723 GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + S + + V DTG+G+T + E+ PF Q +S GTGLGL ++ Sbjct: 1498 -NVRLVVRMESEPIRLCIDVIDTGIGITPEQQEQLFLPFSQGDSSVNRTFGGTGLGLTIS 1556 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII-FP-------LYDTSHP 816 + + + G + S G+ + FP + D S P Sbjct: 1557 RRLAEMLGGTIHFQSEVGVGSTFTLSVFPGDLTGVAMVDHSQP 1599 Score = 94.3 bits (233), Expect = 9e-17, Method: Composition-based stats. Identities = 47/430 (10%), Positives = 120/430 (27%), Gaps = 34/430 (7%) Query: 177 GFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------KYDIFSQQS 229 G RG F NR L + + + + E ++ Sbjct: 579 GLRGAFAEAKANRRRVVRDDLLIMSESGQQRVKLTIQPMMQLGHETELFMVAFEDLGPSI 638 Query: 230 PPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 P + + S H ++ + L T+ + ++ N + Sbjct: 639 APSDSSTDDSIGSDPSIAADPHAQQRIEQLERELATTRDDLDRSIQEMEATNEELTSSYN 698 Query: 288 YFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYA 344 + + + E L S S + I F+ ++ Sbjct: 699 ELLVMNQGLQTANEKLEISKEEIRSSSEAVARANADLQNLLRSTRIATIFLDDDLSIRSF 758 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 P+ + + D + AP + D + L + Sbjct: 759 TPAATEIYGLIATDVGRPLTQI-----APNVQDMPPLPKWELLIQEDGVEH--------T 805 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 A + ++ + ++ S++ A++ Sbjct: 806 IVANTGKAFIRRVLPYRSYSGDHDGIVLTFTDVT-------QLRESEELFQSLVRASAQI 858 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + I N +G++ S + + + G +E + + + + + T+ ++ D Sbjct: 859 VWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDRPLV 918 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 LE E + +R ++ P + + DI + KQ + +L+ + + Sbjct: 919 LEYRLRNRHGEYRWFQVRTAPQRRPDGTVNRWVGMNIDIHDQKQSRLELADREAHLRRVI 978 Query: 583 SHKSDFLARV 592 +++ + + Sbjct: 979 NNQLGLVGVI 988 >gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1] Length = 1436 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 129/749 (17%), Positives = 256/749 (34%), Gaps = 46/749 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G ++ +G +++ L D+ +K++ G+ Sbjct: 292 DLDGKFLSVNSSGAGILGYKPEEIMSKTLFDIVPEYKHHEIQGYLAQIKKEGKAAGQMLT 351 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT + L + + G K + + Sbjct: 352 LHRDGTK-KTWLFNNVLQKNDLDGS---YYVIGNAIDITRRARLEKDLKETKEILEETGK 407 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---------DVLKTEKYP 260 + + S P R ++V TE Sbjct: 408 LARVGGWTLDPIQQKISWS---PMTRAIHEVDDDFVPELETGINFYKEGESREKITEAIE 464 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + T N+ + N+ + + Sbjct: 465 QAMTYGTPWDLDLQLVTQKGNEIWVRAIGNVDFND-GVCTRLFGTFQDINKEKTAELEAA 523 Query: 321 LTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAP 373 + +D+ G + N + YK+ + I + L + Sbjct: 524 RNRKLLDEVFKAASEVSIIATNLEGTITVFNEGAEKMLGYKAEELIGKKTPVIFHLEEEV 583 Query: 374 KLSDNNA--------IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + + ++ + + ++ + Sbjct: 584 IAHAKDVSQDFGYKIEGFQSFVARANRDGSEKIDWTYVRKDGDT-RLVSLAVTPVKDHDN 642 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 +++ GI + + R + + E +L + +E T +A+++++ ++ + + + Sbjct: 643 KSIGYLGIAIDLTEKRNIEIDLVNEKSRLSAFVEHTPAAVAMLDKDMCYIAVSNRWEEEY 702 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRII 544 Y E+++ K + ++L D L EKI E + +S + Sbjct: 703 EYKSEEVIGKSHFDLFSELMNEERRANYYQVLQGDFLINNEEKIFFPGEIEPRFISWEMR 762 Query: 545 IKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 L + +I+ ++ +L AK+ AE+ S KS+FLA +SHEIRTPL Sbjct: 763 PWYLYNGEIGGIMVFTQNITALVAQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNG 822 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IGF++++ + N +Y + + +S N +L I+ND+LD SKIE+GK+ L + Sbjct: 823 VIGFTDLVLKTKL----NETQHQYLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKC 878 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L E S+A ++ K + + + N+PR I AD +KQ+ +N+L N+ FT Sbjct: 879 DLYEMASQATDIITYQIQNKGLEMLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEK 938 Query: 722 GGQIIISTT-HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G +I + S VRDTG+G+ + K + F Q +S + GTGLG Sbjct: 939 G-EIELKIENLESEGNSNTFRFSVRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLG 997 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 L + ++ K + S KG+ Sbjct: 998 LTITNKLLGLMDSKLQLKSEVGKGSTFFF 1026 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 69/537 (12%), Positives = 143/537 (26%), Gaps = 58/537 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150 GY K++S + K +G ++G ++ + + + L + T Sbjct: 172 DGYFKKLSPSVEKLLGWGEDVLLGKSFLELIHEEDKESSKKELEKLGQGIPTINFINRFL 231 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G Y+ I A P E F I ++ + + ++K E Sbjct: 232 KKDGG--YITIQWTASP------EPETQSVFAIGRDITLEKNRELMLIESEQKLRAFFEN 283 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS--EE 266 +G S S + ++ S T + + + L E Sbjct: 284 SQGLMCTHDLDGKFLSVNSSGAGILGYKPEEIMSKTLFDIVPEYKHHEIQGYLAQIKKEG 343 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTP 323 + + H + + + L E + + Sbjct: 344 KAAGQMLTLHRDGTKKTWLFNNVLQKNDLDGSYYVIGNAIDITRRARLEKDLKETKEILE 403 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ET + + S+ +T+ ++ DD S Sbjct: 404 ETGKLARVGGWTLDP---IQQKISWSPMTRAIHEVDDDFVPELETGINFYKEGESREKIT 460 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + T L + + + G + + Sbjct: 461 EAIEQAMTYGT--PWDLDLQLVTQKGNEIWVRAIGNVDFNDGVC--TRLFGTFQDINKEK 516 Query: 442 INKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + L + +A S+ I N EG I N K+ GY E+++ K V Sbjct: 517 TAELEAARNRKLLDEVFKAASEVSIIATNLEGTITVFNEGAEKMLGYKAEELIGKKTPVI 576 Query: 501 LEQNTP----------------SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 ++ + ++ + + +L+SL + Sbjct: 577 FHLEEEVIAHAKDVSQDFGYKIEGFQSFVARANRDGSEK-IDWTYVRKDGDTRLVSLAVT 635 Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 K + Y D++E + + L + KS A V H TP Sbjct: 636 PVKDHDNKSIGYLGIAIDLTEKRNIEIDLVN----------EKSRLSAFVEH---TP 679 Score = 85.1 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 92/321 (28%), Gaps = 22/321 (6%) Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPET 325 ++ P + L ++ + L+ + + + Sbjct: 99 AAFPIIDKTGVFQGTLIVNNPNKVGLNDDQILGLKILAGGLSSLMEDRKKNMELRHFEKM 158 Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + S G +PS L + D + L + + K S ++ Sbjct: 159 FQLSSDLVCLASVDGYFKKLSPSVEKLLGWG-EDVLLGKSFLELIHEEDKESSKKELE-- 215 Query: 385 MLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 I + ++ + A+ PE I + + Sbjct: 216 ----KLGQGIPTINFINRFLKKDGGYITIQW-----TASPEPETQSVFAIGRDITLEKNR 266 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + +L + E + + + +G LS N + + + GY E+I+ K + + Sbjct: 267 ELMLIESEQKLRAFFENSQGLMCTHDLDGKFLSVNSSGAGILGYKPEEIMSKTLFDIVPE 326 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM---H 559 + YL +I L ++ K L + + + Sbjct: 327 YKHHEIQGYLAQIKKEGKAAG---QMLTLHRDGTKKTWLFNNVLQKNDLDGSYYVIGNAI 383 Query: 560 DISEWKQEKNKLSHAKKIAEK 580 DI+ + + L K+I E+ Sbjct: 384 DITRRARLEKDLKETKEILEE 404 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 65/263 (24%), Gaps = 32/263 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM------RLCD--VSDILHIDPN-----NHIGD 135 + G + +E K +G A ++IG L + ++ + + Sbjct: 544 TNLEGTITVFNEGAEKMLGYKAEELIGKKTPVIFHLEEEVIAHAKDVSQDFGYKIEGFQS 603 Query: 136 LLKRQNTWYGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + R N + W +G + LA P+ + + G+ G I + Sbjct: 604 FVARANRDGSEKIDWTYVRKDGDTR--LVSLAVTPVKDHDNKSIGYLGIAI--DLTEKRN 659 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + S E ++ + + + + + + Sbjct: 660 IEIDLVNEKSRLSAFVEHTPAAVAMLDKDMCYIAVSNRWEEEYEYKSEEVIGKSHFDLFS 719 Query: 253 VLKTEKYPL------------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 L E+ E+ P + + I+ Y G + + Sbjct: 720 ELMNEERRANYYQVLQGDFLINNEEKIFFPGEIEPRFISWEMRPWYLYNGEIGGIMVFTQ 779 Query: 301 EYLSHRNHPSLSAYFDEGENLTP 323 + E Sbjct: 780 NITALVAQREELKEAKESAEEAS 802 >gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51] gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 896 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 108/643 (16%), Positives = 213/643 (33%), Gaps = 65/643 (10%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 HL + + + + +D Sbjct: 6 HLVDNLPALLWSSDRAGNYDYVNQAWLQFTGLTFAEVRGEGWLSCVHPEDSPGVMNVLEH 65 Query: 262 LTSEESSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ + + + Y + + + + E Sbjct: 66 SRRHKAPFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVIIDITERKAAEIMTRE 125 Query: 318 GENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIE---------I 362 E ++ F++ G + N L + I+ Sbjct: 126 NAEKFREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKS 185 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L+ LS N + ML I + H N L Sbjct: 186 PLTLANEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRML----------- 234 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILST 477 I + + + + + + + + +D + + + G+++ Sbjct: 235 --------LSIARDISNQKRIHKILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEI 286 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N +L GY E+ + ++P + + ++L + E I E+ Sbjct: 287 NEKARRLMGYH-EETFMFSAGPCIRPSSPQLTLDDVWQMLEETHSASFEGICTNLEGEDI 345 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKSDFLA 590 + + L S + DI+E K + + + AK+ AE + KS+FLA Sbjct: 346 PVEVNCHTFPLNGSKVMLTLLRDITERKQIEQERKRAEAEFQQAKEKAEAANRAKSEFLA 405 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ IIG + + E + I+ND+LD SKI Sbjct: 406 NMSHEIRTPINGIIG----MIDLTLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKI 461 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709 E+GK+ + +L E + + I A K + + + + N+P D +KQ+ Sbjct: 462 EAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLN 521 Query: 710 NILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N+LSNA+ FT G ++ ++ ++ V DTG+G+ + + F Q+ Sbjct: 522 NLLSNALKFTERG-EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDG 580 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S + GTGLGL +++ +V+ G+ ++ S KG+ ++ Sbjct: 581 SITRKYGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623 Score = 87.4 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 45/393 (11%), Positives = 87/393 (22%), Gaps = 30/393 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W+ D G +++ + G ++ G D + L + Sbjct: 14 LLWSSDRAGNYDYVNQAWLQFTGLTFAEVRGEGWLSCVHPE--DSPGVMNVLEHSRRHKA 71 Query: 145 GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + + L+ P E +G+ G I + + +K Sbjct: 72 PFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVII--DITERKAAEIMTRENAEK 129 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 F + + + K D + + + + K PL Sbjct: 130 FREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTL 189 Query: 264 SEESS----------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + E + H K ++ L N + Sbjct: 190 ANEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRMLLSIARDISNQKRIHK 249 Query: 314 YFDEGENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 N + D FVY G L N L Y + AG Sbjct: 250 ILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKARRLMGYHEETFMFSAGPCI 309 Query: 368 TLLDAPKLSDN---------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 D+ +A + + I HT N + Sbjct: 310 RPSSPQLTLDDVWQMLEETHSASFEGICTNLEGEDIPVEVNCHTFPLNGSKVMLTLLRDI 369 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + Q + + E + + Sbjct: 370 TERKQIEQERKRAEAEFQQAKEKAEAANRAKSE 402 >gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia psychrerythraea 34H] Length = 1683 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 116/531 (21%), Positives = 229/531 (43%), Gaps = 30/531 (5%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349 + S+ S + L+ + E + V G+ +AN S Sbjct: 657 RANDISRRSQQELAEQVTIRT-KELAASEQKSKLINSSVADGILGVDKLGHFIFANESAT 715 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 +T Y + + L +L +N + +Y++ ++ + + Sbjct: 716 KITGYSEEQIL--SSDLISLFAGDNK-ENLTFEDTEVYKAIQSKEVIRISNEYVLMSGAR 772 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 L + + + E + + E +L +LE + I+N Sbjct: 773 ELPLEYSISPVEDDESELACVIAL-QDITLRV-------QETERLEKMLEHLPVCMVIMN 824 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL---RQTLE 526 + + N+ +L G+ ++I+ P +F+ Q L + + ++LE Sbjct: 825 QNDEVEQINQTGIELLGFERDEIVGNPVDLFIPQEQVESHKALLKKFFQEETVIDTRSLE 884 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + K KL+ ++ + + F + + DI+ +Q + L AK+I++ S Sbjct: 885 RDFKVKHKSGKLIEIQAVYTPVHFHNGLYAAVMVRDITLDRQAEFALLEAKRISDDASKA 944 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KSDFLA +SHEIRTP+ AI+G S + G + + Y + ++ +L I+ND+ Sbjct: 945 KSDFLANMSHEIRTPMNAIMGMSHL----ALGCELDRKPKNYVTKVYKAAESLLGIINDI 1000 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703 LD SKIE+GK+++ SL + ++ +++ L A EK + + + ++P + D Sbjct: 1001 LDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLKAGEKNLELLFDISPDVPVNLKGDPLR 1060 Query: 704 VKQIALNILSNAIHFTPSGGQII-------ISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + QI +N+ NA+ FT G +I +ST+H + + V+D+G+GM + + +K Sbjct: 1061 LNQILINLAGNAVKFTEQGQVVISVNVVTNVSTSHCDDINLEFSVKDSGIGMDDEQQKKL 1120 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + F Q +S + GTGLGL ++K +V+ G+ ++ S +G+ Sbjct: 1121 FQSFSQADSSTTRKYGGTGLGLTISKKLVELMNGQIWLESKAGEGSCFSFT 1171 >gi|83646319|ref|YP_434754.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634362|gb|ABC30329.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 778 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 98/499 (19%), Positives = 216/499 (43%), Gaps = 26/499 (5%) Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E ++ V+ + + G + NP+ + Y + + + + L+ +P Sbjct: 17 ESDSRVRAIVEAVADGIITIDNQGVIESFNPAAERIFGYDAEEAVGRN--VQMLMPSPFR 74 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 +++ L + I + ++ + Q G+ Sbjct: 75 EHHDSYLANYLQTGNAQIIGVGREVLGLRKDGS---LFPLDLAVTEMQVEGRRMFTGVVR 131 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + ++ ++ ++ +I++ DGI I+ G+I + N A ++FGY D++ Sbjct: 132 DISERKASELALQDREARVRAIVDTVVDGIITIDGAGLIDTFNPAAERIFGYAASDVIGV 191 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553 ++ + + S + Y+ + + + + + G ++ + + + ++ Sbjct: 192 NVSILMPEPYHSEHDGYIAKFMHTGEAKVIGVGREVTGRRRDGSTFPMELAVSEMTVEGR 251 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 ++ + DI++ K+ + K +F+A VSHE+RTPLTAI G ++ Sbjct: 252 RMFTGVVRDITDRKRME--------------RQKDEFIATVSHELRTPLTAIGGALGLVL 297 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + G L ++ R+ + + ++ND+L+I K+ESG + E L + + Sbjct: 298 GKHGGELPK-TVLKMLKVAHRNCDRLTLLINDILEIEKLESGALKFELEDQDLATLIQRS 356 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + +A + ++ +R S + P + D R Q+ N++SNA+ ++P GG + I+ + Sbjct: 357 LEDHKEFAGKYQVELRFSNSPPRPWVHVDERRFHQVMSNLISNAVKYSPRGGAVDIAVSD 416 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +N V + V+D G G+ + + F Q +S GTGLGL +AKA+V+ + G+ Sbjct: 417 VAN-RVRVHVKDYGKGIPEDFHSRVFERFSQADSSDTREQGGTGLGLSIAKAIVEHHGGE 475 Query: 792 FYIFSTPAKGTLIEIIFPL 810 FS +G P+ Sbjct: 476 IGFFSKTNEGAEFYFDLPI 494 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 24/284 (8%), Positives = 75/284 (26%), Gaps = 30/284 (10%) Query: 66 NYLDSENTFVFDPIPRTVRFT-------WNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 N+ + F + R ID G ++ + + G A + +G + Sbjct: 6 NHKAGGSGFRSESDSRVRAIVEAVADGIITIDNQGVIESFNPAAERIFGYDAEEAVGRNV 65 Query: 119 CDVSDILHIDPNNH-IGDLLKRQNT----WYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + ++ + + L+ N + +G+ + + + Sbjct: 66 QMLMPSPFREHHDSYLANYLQTGNAQIIGVGREVLGLRKDGSLFPLDLAVT-------EM 118 Query: 174 EFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP- 231 + G R F G+V + + + + + I + Sbjct: 119 QVEGRRMFTGVVRDISERKASELALQDREARVRAIVDTVVDGIITIDGAGLIDTFNPAAE 178 Query: 232 --PHLRMKNKVSS-----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + + + E Y + D + ++ + + + + + Sbjct: 179 RIFGYAASDVIGVNVSILMPEPYHSEHDGYIAKFMHTGEAKVIGVGREVTGRRRDGSTFP 238 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + F + + + ++ TV Sbjct: 239 MELAVSEMTVEGRRMFTGV--VRDITDRKRMERQKDEFIATVSH 280 >gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 1307 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 196/699 (28%), Positives = 302/699 (43%), Gaps = 130/699 (18%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 VD + A RLD + D Q P P S Sbjct: 657 ETEVDAEDEADLARLDGVDEAVRAEDDTSPGATGSLLDYADQSEPGPVADNDEPAVSEPA 716 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQED------FHTINLNQYTKKQYFGTLQNNSKES 299 + + ++ + P +D F N+ G + S Sbjct: 717 AAEPESTEPVATDAEPVGADMTHEPVDDDSMTSADFRDAEDNEDWAGSEEGAAPDVQAAS 776 Query: 300 FEYLSHRNHPSLSAYF--------------DEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 +H P L DE + + K P+P ++S L YAN Sbjct: 777 DGAEAHAERPRLQVPPLKTEGFTPSAFSVGDESKAPDTLLLGKLPVPLLIHSGDQLHYAN 836 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHT 402 FL LT Y ++DD+E AGGL L P D + + + + L D A L + Sbjct: 837 EEFLNLTGYAALDDLEDAGGLGALFADPYAEDGVSDGSDRALRLKTRDGQEFPIDAILRS 896 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + W +L + ++ P + G EP D +++ + ++ +I++ + Sbjct: 897 VPWRDGKALMLVVRR-SGEDETPVALHVVGDEPTQPDI----SELKARIAEMRTIIDTAT 951 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 DG+ +I +G I S +R LFG+ +++ KPF + YLT + + Sbjct: 952 DGVVLIGTDGTIRSISRPAEALFGFDSDEVTGKPFASLFAIESQRAARDYLTGLSEPGVA 1011 Query: 523 QTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L + +G + + + L + I +LP S + + DI++WK+ + L+ A+ +AE+ Sbjct: 1012 SVLNDGREVIGREAQGRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAER 1071 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 SS K+DFLAR+SHEIRTPL AIIGFSE++ +++FGP+ N RY +Y I+RSGN VLD+ Sbjct: 1072 ASSQKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDL 1131 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 VNDLLDISKIE+G+ + +E VSL++ ++E ++++Q AN +R++IR+SFA+ +P ++AD Sbjct: 1132 VNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVAD 1191 Query: 701 LRSVKQIALNILSNAIHFT----------------------------------------- 719 LRSV+QIALNILSNAI +T Sbjct: 1192 LRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPF 1251 Query: 720 ---------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 G Sbjct: 1252 KQINALKRGRGDG----------------------------------------------- 1264 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGLPL KAMV+AN +F I STP +GTL+E+ FP Sbjct: 1265 ---TGLGLPLTKAMVEANRARFTINSTPGEGTLVEVAFP 1300 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 80/408 (19%), Positives = 136/408 (33%), Gaps = 9/408 (2%) Query: 37 EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96 + ++ S T + D +RF W DA G Sbjct: 326 DPETVPGQTAADAAVEKSGADGIQATSPTVPTATPAARTIDRSAAPMRFVWRTDAEGKFS 385 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156 +S E +G A +IG R DV+ +D + I LL+R++TW G+T LWP+ GT+ Sbjct: 386 TLSPEFADIVGQPAADVIGRRFRDVAAAFGLDASGEIAGLLERRDTWSGRTALWPVVGTD 445 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 L +P+DLAALP+Y R+R F GFRGFG+ + DP A+G L + + Sbjct: 446 LKIPVDLAALPVYGRSRAFEGFRGFGVARPSDAVVDPEAIGMALMPNGKAPAAPEAVEPA 505 Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276 E+ K + P ++ + + D + + L E Sbjct: 506 AEEPKA---GEPKADPFKGEVPALTIVPKPERRFADKVIRLAEHRQPVNDKGLSTLERSA 562 Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 + + KK +++ + + E P P V Sbjct: 563 FREIGERLKKDSSTAEPPEAEKPGVESHPAEPAAAAPAEPVAEAQAPTARTDAP----VD 618 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + G + A+ + + + L P ++ +A L R D A Sbjct: 619 AAGGVSEADTATPPEEPKDAGEHPATEPQGDPALAEPSETEVDAEDEADLARLDGVDEAV 678 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 A + + + +N EP + + Sbjct: 679 RAE--DDTSPGATGSLLDYADQSEPGPVADNDEPAVSEPAAAEPESTE 724 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 26/273 (9%), Positives = 62/273 (22%), Gaps = 7/273 (2%) Query: 58 NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 ++ + + + L + + I I G ++ IS G + ++ G Sbjct: 926 DEPTQPDISELKARIAEMRTIIDTATDGVVLIGTDGTIRSISRPAEALFGFDSDEVTGKP 985 Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 + I L + G +P++ Sbjct: 986 FASLFAIESQRAARDYLTGLSEPGVASVLNDGREVIGREAQGRF----IPLFMTIGRLPN 1041 Query: 178 FRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 GF +V + K + + M Sbjct: 1042 DSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFSELM 1101 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 ++ ++D + + + + D I Q +L + Sbjct: 1102 VDEKFGPVANDRYRDYLRDINRSGNHVL--DLVNDLLDISKIEAGQQEMAYEAVSLNDTL 1159 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E+ + + + + PE V Sbjct: 1160 AETVAMMQPQANRERVIIRSSFASRLPEVVADL 1192 >gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 982 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 126/712 (17%), Positives = 234/712 (32%), Gaps = 71/712 (9%) Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 +++ G P+ G V + A + F+G + +D A Sbjct: 147 KEHPETGTLINDPVLGYVTKVHLVPVAARYRYPDGRFAGIVSVAV--PVSYLSDQLAKLD 204 Query: 199 RLDKKFSHLHEIK-----KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + L + K + + + E + +++ S + D Sbjct: 205 YGPHGLAVLRDAKLNLITRYPALNKPEGELGAPIYNKTLIAGIEDGKRSFFYHTQTTPDG 264 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + S + ++ T+ +F + Sbjct: 265 VSRLITYQRLS-SMPFHLIVGLAHDDYLLPWYERLQQTVIALVIFAFATFALSLLLLGML 323 Query: 314 YFDEGE-NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGG------ 365 + + + HG + AN +F L Y + I +A G Sbjct: 324 SSLRRQGEHAVALLKNASDGVHILDRHGVIVEANDAFCALLGYSRQEVIGMAIGQWDSSV 383 Query: 366 ----LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + +L S R D + A + Sbjct: 384 KDVDVEAMLAQRFQSPVPDQFETRHRRKDGSEFPAEVSFQPMVIEG-------------- 429 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + D + + + E ++++ D I + + +G+ LS NR Sbjct: 430 -----VELLYASSRDISDRKRAELVLARERSMYRTLIDTLPDLIWLKDADGVYLSCNRRF 484 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + FG ++I+ K F+ + + + + D E+ + L Sbjct: 485 EQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAMEKDGPSINEEEVPF-ASDGHRELL 543 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK----------------- 580 + +S HDI+ ++ + +L ++ ++ Sbjct: 544 ETTKMSMRDASGKLIGVLGIGHDITAKRRSELELDGHRQHLQELVDSQTADLMVAKEVAE 603 Query: 581 -ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S KS FLA +SHEIRTP+ AI G +++N P + + + I+ + +L Sbjct: 604 TASVAKSAFLANMSHEIRTPMNAITGMVHILRNMGVTPPQSEK----LDIIENASKHLLG 659 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 I+ND+LD+SKIE+GK L P+S+ S++ EK +++ + + Sbjct: 660 IINDVLDLSKIEAGKFTLEDVPLSIRALFGNVASMLGPKVREKGLVLNIEADDVPRNLRG 719 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEK 755 D ++Q LN NA+ FT G I + E+ + V DTGVG+ L K Sbjct: 720 DPTRLQQALLNFAGNALKFTERG-HITLRARILEETELSANLCIEVEDTGVGIAPEALPK 778 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q NS + GTGLGL + K + + G + STP G+ Sbjct: 779 LFGAFEQADNSMTRKYGGTGLGLAITKKIAEVMGGTAGVNSTPGGGSTFWFT 830 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 45/407 (11%), Positives = 117/407 (28%), Gaps = 26/407 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D HG + E ++ +G ++IGM + S + +D + + +T Sbjct: 347 LDRHGVIVEANDAFCALLGYSRQEVIGMAIGQWDSSVKDVDVEAMLAQRFQSPVPDQFET 406 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ P +++ P+ E + + R + L Sbjct: 407 RHRRKDGS--EFPAEVSFQPMVIEGVELL----YASSRDISDRKRAELVLARERSMYRTL 460 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++ S + ++ T+Y ++ + + Sbjct: 461 IDTLPDLIWLKDADGVYLSCNRRFEQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAM 520 Query: 266 E---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEG 318 E S+ E+E + ++ + ++++ S + L D Sbjct: 521 EKDGPSINEEEVPFASDGHRELLETTKMSMRDASGKLIGVLGIGHDITAKRRSELELDGH 580 Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E VD V A +FL ++ + G+ +L ++ Sbjct: 581 RQHLQELVDSQTADLMVAKEVAETASVAKSAFLANMSHEIRTPMNAITGMVHILRNMGVT 640 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + K ++ + + + + + + +P F G + Sbjct: 641 PPQSEKLDIIENASKHLLGIINDVLDLSKIEAGKFTLEDVPLSIRALFGNVASMLGPKVR 700 Query: 437 D------VDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILS 476 + ++ R + + +L ++L + G I Sbjct: 701 EKGLVLNIEADDVPRNLRGDPTRLQQALLNFAGNA-LKFTERGHITL 746 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 4/157 (2%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW 143 W DA G + + G +++G D D H +++ Sbjct: 467 LIWLKDADGVYLSCNRRFEQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAMEKDGPS 526 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + P ++ + + + + G G G H + Sbjct: 527 INEE-EVPFASDGHRELLETTKMSMRDASGKLIGVLGIG--HDITAKRRSELELDGHRQH 583 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 L + + V KE + S M +++ Sbjct: 584 LQELVDSQTADLMVAKEVAETASVAKSAFLANMSHEI 620 >gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217] gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217] Length = 1659 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 140/789 (17%), Positives = 276/789 (34%), Gaps = 58/789 (7%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILH 126 LD+EN + + ++ + D+ G + ++ G +++ G L + + Sbjct: 341 LDAENARRANILEHSLDAIISYDSEGLITGWNQGAEHIFGYTKDEVMQGANLGLIVPAAN 400 Query: 127 IDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 + +L + E + + ALPIY+ G + Sbjct: 401 KEIEWTQFKQVLSGEAIQNAVGVHHDKE--QNKLSTSMTALPIYNHVGVIVGVSQ--TIR 456 Query: 186 VNRVDNDPR----ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----- 236 D L L++K + + + K +D QQ + + Sbjct: 457 DITAAQDAERQIHELNASLERKVHLRTQALEHVVAENKTLFDTIDQQLLYSEIDLQGIIL 516 Query: 237 -------------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LN 281 + ++ L+ + K L +S P + T++ Sbjct: 517 AVNDNFCEASGYSREQLVGLSHLQVSSGEHDKLFWQRLWNKIKSGKPWHGEICTLDSKGE 576 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP------FFV 335 + + K ++S + +N + Sbjct: 577 PKWFDTVIAPIFDKQKNIERFVSLATDITERKNAQLEKNKVGALLSNVLFAASEVAIIAT 636 Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 G + N L Y + + + L L + + Sbjct: 637 DETGIISIFNRGAERLLGYHRDELVGKISPAIFHLTQEVMLRGDELSAEHGIEIRGFEAF 696 Query: 395 AASA-------RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 A R T + ++ + + G+ + ++ Sbjct: 697 IYHAKHKGPETRRWTYVRKDGSECQVSLSVSAMRDTQGNLLGYLGVATNIDLMLKQQEEL 756 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQ 503 QL E GI E IL N + ++ YP + + + L Sbjct: 757 VSTSTQLTQAAEVAELGIWTWEIETNILDWNERMFAIYDYPSSLNHNGLSYQHWLDRLHP 816 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDI 561 + + L + + + E + + + + F DI Sbjct: 817 DDVDMAQEKLKAAIEGTGEYDPIFRVIRPSDEVRYVQGGAHVIRDRFGKALKLLGINRDI 876 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ ++ L AK+ A+ S+ KS FLA +SHEIRTP+ AI+G +++++ P Sbjct: 877 TEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTDMTP---- 932 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + +Y + + + +L ++ND+LD SKI++GK+N+ P SL+E + E L+ Sbjct: 933 QQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAANMRR 992 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNE-EV 737 K I + +IP +LAD + ++Q+ LN+ NAI FT G I + + +S++ + Sbjct: 993 KHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSHKVRL 1052 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G+ +L+K + F Q +S R GTGLGL + K +V+ + + S Sbjct: 1053 RISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVESQ 1112 Query: 798 PAKGTLIEI 806 +G+ Sbjct: 1113 EGQGSRFWF 1121 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 59/430 (13%), Positives = 124/430 (28%), Gaps = 37/430 (8%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + EF G RGFG + RV A K + + + E++ I Sbjct: 92 TRDIDIEFPGARGFGFIR--RVKPIDEASFIAKVKHAGWPDFSIRQLTPHDNERFVIELV 149 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + ++ + L+ + + + L + Sbjct: 150 EPVERNMAAIGLDIASETNRYQAAYQALLSGKVHLSGPITLVQATGNPQQSFLILLPIYR 209 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 + E P + E NLT ET + +NP Sbjct: 210 TGNIPETVKLRKAEGFGWSYAPLVIDEVLEDLNLTQETTK-------LELKDVTDNSNPV 262 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 T + + + S + + Sbjct: 263 LFYQTHAFDTAKL------------------SRYSTTLSTNIFGRQWTISVSAYPVFIE- 303 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 SL +T A ++ + + KR ++ E + +ILE + D I Sbjct: 304 --SLHLTRPSLVLAYGLLMSLLFAVLMAFYSRNKQQKRLLDAENARRANILEHSLDAIIS 361 Query: 468 INREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + EG+I N+ +FGY ++++ + + + ++LS + Q Sbjct: 362 YDSEGLITGWNQGAEHIFGYTKDEVMQGANLGLIVPAANKEIEWTQFKQVLSGEAIQ--N 419 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582 + + KE+ LS + + + T+ DI+ + + ++ E++ Sbjct: 420 AVGVHHDKEQNKLSTSMTALPIYNHVGVIVGVSQTIRDITAAQDAERQIHELNASLERKV 479 Query: 583 SHKSDFLARV 592 ++ L V Sbjct: 480 HLRTQALEHV 489 >gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1242 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 94/518 (18%), Positives = 196/518 (37%), Gaps = 36/518 (6%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDI 360 + + ++ L V + + Y N +F LT Y+ I Sbjct: 311 DITEGKHQEQRLRLLESAVSHTTDAIAIAQSNPENTTDSQIVYINKAFTNLTGYQPEGII 370 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + + D + + + + + L + N A Sbjct: 371 GKNPNI------LQGIDTDEQQLKRVEVALSQSESIQVELINYRQNGSKYWA-DLSISPV 423 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + ++ + ++ ++ E QL I+ +AI++ ++ + Sbjct: 424 TDDTGKVSHFVFVQRDITSRKLKTSTLQKEREQLQQIITNAPVAVAILDCSMRYIAYSDR 483 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + P E ++ + + + ++ ++ E + + Sbjct: 484 WLQEYHLPQESLVGRSHYEIFPHIS-ETCRELYRKAIAGEVISCSEDVMTYPDGSQGYFR 542 Query: 541 LRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 I + + I E + ++ A + S KS FLA +SHEIRT Sbjct: 543 WAIHPWYTLNQEIGGVVIATYPIDELVKA-------REAALENSRLKSQFLANMSHEIRT 595 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ ++G + ++ + ++ I S + +L I+ND+LD SK+E+ ++ L Sbjct: 596 PMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSADHLLSIINDILDFSKLEAQEIELE 651 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 L+E + I L+ A K I + N+PR + D ++Q+ LN++SN I Sbjct: 652 ELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLLNLMSNGIK 711 Query: 718 FTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FTP+G ++ + + N ++ V+DTG+G+ E+ + F Q+ S + Sbjct: 712 FTPAG-EVTLRVSRPPNYDINAPLTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKF 770 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K +++ G+ + S +G+ P Sbjct: 771 GGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLP 808 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 35/389 (8%), Positives = 100/389 (25%), Gaps = 32/389 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D+ ++ + + A +++G D+ + Sbjct: 218 DSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLLPTTIAQKLQESDQKVFDSGRVQQTHQN 277 Query: 149 LWPIEGTN-LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF--- 204 + G ++ ++ PI+++NR G + L+ Sbjct: 278 IVNYHGKIRQFISVNF---PIFNQNRHILAVCNIGS--DITEGKHQEQRLRLLESAVSHT 332 Query: 205 -SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----KDDVLKTEKY 259 + + + + ++ + + LK + Sbjct: 333 TDAIAIAQSNPENTTDSQIVYINKAFTNLTGYQPEGIIGKNPNILQGIDTDEQQLKRVEV 392 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----F 315 L SE S+ + + N ++Y + +++ + ++ + + Sbjct: 393 ALSQSE--SIQVELINYRQNGSKYWADLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTL 450 Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + + P+ + + +L + + Sbjct: 451 QKEREQLQQIITNAPVAVAILDCSMRYIAYSDRWLQEYH------LPQESLVGRSHYEIF 504 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + I+ S + T + P+ NQ + I Sbjct: 505 PHISETCRELYRKAIAGEVISCSEDVMTYPDGSQGYFRWAIHPWYTLNQE---IGGVVIA 561 Query: 435 PEDVDTRINKRKMEIEVMQLCS-ILEATS 462 +D + R+ +E +L S L S Sbjct: 562 TYPIDELVKAREAALENSRLKSQFLANMS 590 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 2/143 (1%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 E L +IL+ I + + + NR P ++IL K L Sbjct: 193 ATNATQEKHLLQAILDNCPALICAKDSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLLPT 252 Query: 504 NTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDI 561 + ++ S ++QT + I K + +S+ I + DI Sbjct: 253 TIAQKLQESDQKVFDSGRVQQTHQNIVNYHGKIRQFISVNFPIFNQNRHILAVCNIGSDI 312 Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584 +E K ++ +L + + Sbjct: 313 TEGKHQEQRLRLLESAVSHTTDA 335 >gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 1235 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 98/518 (18%), Positives = 193/518 (37%), Gaps = 36/518 (6%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDI 360 + ++ L V + + Y N +F LT Y+ D I Sbjct: 304 DITEGKRQEQRLRLLESAVSHTTDAIAIAQCNPEKTTDSQIVYINKAFTNLTGYQPEDII 363 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + +D +K V + S I + + Sbjct: 364 GKNPNI----LQGTDTDEQQLKRVEVALSQGQSIQVELINYR---QNRSKYWADLSISPV 416 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + ++ + ++ ++ E QL I+ +AI++ ++ + Sbjct: 417 TDDTGKVSHFVFVQRDITSRKLKTSTLQREREQLQQIITNAPVAVAILDCSMRYIAYSDR 476 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + P E ++ + + + ++ ++ E + Sbjct: 477 WLQEYHLPPESLVGRSHYEIFPHISETCT-EVYRRAIAGEVISCSEDNMIYPDGSHGYFR 535 Query: 541 LRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 I + + I E + ++ A + S KS FLA +SHEIRT Sbjct: 536 WAIHPWYTLNQEIGGVVIATYPIDELVKA-------REAALENSRLKSQFLANMSHEIRT 588 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ ++G + ++ + ++ I S N +L I+ND+LD SK+E+ ++ L Sbjct: 589 PMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSANHLLAIINDILDFSKLEAQEIELE 644 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 L+E + I L+ A K I + N+PR + D ++Q+ LN++SN I Sbjct: 645 DLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLLNLMSNGIK 704 Query: 718 FTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FTP+G ++ + + N ++ V+DTG+G+ + + F Q+ S + Sbjct: 705 FTPAG-EVTLRVSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQVDASTTRKF 763 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K +VD G+ + S +G+ P Sbjct: 764 GGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLP 801 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 90/290 (31%), Gaps = 42/290 (14%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 E L +IL+ I + + + NR P ++IL K Sbjct: 186 ATNATQEKHLLQAILDNCPALICAKDSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLFPT 245 Query: 504 NTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDI 561 + ++ S ++QT + I K + +S+ I + DI Sbjct: 246 TIAQKLQESDQKVFDSGRVQQTHQNIVNYHGKIRQFISVNFPIFNQNRHILAVCNIGSDI 305 Query: 562 SEWKQEKNKLSHAKKIAEKESSHK------------SDFLARVSHEIR---TPLTA---- 602 +E K+++ +L + + S + I T LT Sbjct: 306 TEGKRQEQRLRLLESAVSHTTDAIAIAQCNPEKTTDSQIVY-----INKAFTNLTGYQPE 360 Query: 603 -IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL-DIVNDLLDISKIESGKMNLHFE 660 IIG + I G + + ++ G + +++N + K + Sbjct: 361 DIIGKNPNILQ---GTDTDEQQLKRVEVALSQGQSIQVELIN-----YRQNRSKY---WA 409 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 +S+ + + ++ I R + + R + ++QI N Sbjct: 410 DLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTLQR---EREQLQQIITN 456 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 32/387 (8%), Positives = 93/387 (24%), Gaps = 28/387 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D+ ++ + + A +++G D+ + Sbjct: 211 DSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLFPTTIAQKLQESDQKVFDSGRVQQTHQN 270 Query: 149 LWPIEGTN-LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF--- 204 + G ++ ++ PI+++NR G + L+ Sbjct: 271 IVNYHGKIRQFISVNF---PIFNQNRHILAVCNIGS--DITEGKRQEQRLRLLESAVSHT 325 Query: 205 -SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE--KYPL 261 + + + ++ + D + + + + Sbjct: 326 TDAIAIAQCNPEKTTDSQIVYINKAFTNLTGYQPEDIIGKNPNILQGTDTDEQQLKRVEV 385 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----FDE 317 S+ S+ + + N ++Y + +++ + ++ + + Sbjct: 386 ALSQGQSIQVELINYRQNRSKYWADLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTLQR 445 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + P+ + + +L + Sbjct: 446 EREQLQQIITNAPVAVAILDCSMRYIAYSDRWLQEYHLPPESLVG------RSHYEIFPH 499 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + V I+ S P+ NQ + I Sbjct: 500 ISETCTEVYRRAIAGEVISCSEDNMIYPDGSHGYFRWAIHPWYTLNQE---IGGVVIATY 556 Query: 437 DVDTRINKRKMEIEVMQLCS-ILEATS 462 +D + R+ +E +L S L S Sbjct: 557 PIDELVKAREAALENSRLKSQFLANMS 583 >gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1315 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 111/657 (16%), Positives = 230/657 (35%), Gaps = 45/657 (6%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 +H++ + + + P + + Sbjct: 438 TALTESESRLNQILEAIPVGISVHDVSGQIIYANQTSKQLLGIDT-LPEATTTDLSGTFH 496 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYL 303 Y A +++ E+ PL+ + + + +D + + + Y ++N + + Sbjct: 497 VYQAESEELYPVEQMPLVRAFQGEKVKVDDMEIRLPDRRIPLEVYGTPIRNETGTIVAAI 556 Query: 304 SHRNHPSLSAYFDEGENLTPETVDK--------CPIPFFVYSHGNLFY--------ANPS 347 + + + ++ +T+ + GN + + Sbjct: 557 ATFSDITERKQTEQILADYNQTLATQVRERTVELNEAQRLAHLGNWSFDVNSKKISWSDE 616 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + LL D + ++ I + Sbjct: 617 VFRICGRDPSQ---SEPSYEQLLQQIHRDDVAQFQHDIEQAMTEGKSYE---HEQRIVRS 670 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + N + + G + + ++ + ++ + + E D Sbjct: 671 DGSIRYVLAKGEAILNSSGQVVQLFGTVQDISERKLIEEQLRESEEKFRQLAENIQDVFF 730 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I++ G IL N +++ + + + + + + L Sbjct: 731 ILSYTGEILYINPVYEQIWQRTCQSLYDNPRSWLDSVFPEDYPSTVAAMERQLQDSTDFD 790 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 E + + R + + DI++ KQ + L+ AK AE + Sbjct: 791 QVYRITRPNGEIRWIRARSFPVPHQKTYRFVGIAEDITDRKQIELALTEAKDAAETANRA 850 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AI+GF+++++ P Y E I RS +L ++N + Sbjct: 851 KSTFLANMSHELRTPLNAIMGFTQLMQRSSTFPAD---YQENLQIIYRSSEHLLTLINQV 907 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD+SKIE+G++ L+ L + + +L Q+ A +K + + +++ +P+ + D Sbjct: 908 LDLSKIEAGRITLNQTVFDLYALLRDVENLFQIKARDKGLQLLFDYSDQVPQYVQTDAVK 967 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTH------------TSNEEVILRVRDTGVGMTNY 751 ++Q+ +N+LSNA FT GG I + + + + DTG GM Sbjct: 968 LRQVLINLLSNAFKFTQEGG-ISVKVSRGIDVGETPTANKPEEITLQFEIEDTGAGMAAE 1026 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ELE F Q +Q + EGTGLGL +++ V G + S +GT+ Sbjct: 1027 ELESIFDAFIQSKTGKQHQ-EGTGLGLSISRKFVQLMGGDLTVASQVDQGTVFRFEI 1082 Score = 78.9 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 17/201 (8%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E S+ + + ++ + + + +L ILEA GI++ Sbjct: 401 EQSVVIQRHDEVGELANSFVQMASQLQASFTELQTLNTALTESESRLNQILEAIPVGISV 460 Query: 468 INREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLE------QNTPSVMNHYLTEILSLD 520 + G I+ N+ +L G + + + V L + Sbjct: 461 HDVSGQIIYANQTSKQLLGIDTLPEATTTDLSGTFHVYQAESEELYPVEQMPLVRAFQGE 520 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576 + + + + L + + + T DI+E KQ + L+ + Sbjct: 521 KVKVDDMEIRLPD---RRIPLEVYGTPIRNETGTIVAAIATFSDITERKQTEQILADYNQ 577 Query: 577 IAEKESSHKSDFLA---RVSH 594 + ++ L R++H Sbjct: 578 TLATQVRERTVELNEAQRLAH 598 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 37/393 (9%), Positives = 95/393 (24%), Gaps = 42/393 (10%) Query: 90 DAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147 D G + ++ + +G + L + + + + + G+ Sbjct: 462 DVSGQIIYANQTSKQLLGIDTLPEATTTDLSGTFHVYQAESEELYPVEQMPLVRAFQGEK 521 Query: 148 TL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 I + +P+++ PI + + L Sbjct: 522 VKVDDMEIRLPDRRIPLEVYGTPIRNETGTIVAA--IATFSDITERKQTEQI---LADYN 576 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY----- 259 L + + E + + + K S + D ++E Sbjct: 577 QTLATQVRERTVELNEAQRLAHLGNWSFDVNSKKISWSDEVFRICGRDPSQSEPSYEQLL 636 Query: 260 ---------------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 +E S ++ + + + N+S + + Sbjct: 637 QQIHRDDVAQFQHDIEQAMTEGKSYEHEQRIVRSDGSIRYVLAKGEAILNSSGQVVQLFG 696 Query: 305 HRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 S +E + E + FF+ S G + Y NP + + + Sbjct: 697 TVQDISERKLIEEQLRESEEKFRQLAENIQDVFFILSYTGEILYINPVYEQIWQRTCQSL 756 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + ++ + R + +++ I + F Sbjct: 757 YDNP----RSWLDSVFPEDYPSTVAAMERQLQDSTDFD-QVYRITRPNGEIRWIRARSFP 811 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 +Q GI + D + + + Sbjct: 812 VPHQKTY--RFVGIAEDITDRKQIELALTEAKD 842 >gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 885 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 123/632 (19%), Positives = 253/632 (40%), Gaps = 27/632 (4%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--TEYYA 248 A + + HL I S E ++ + + ++ + Sbjct: 16 ETALAESQNRLRDLFHLAPIGIAEISTEGYFLEVNTAFCRWVGYSQADLINLDFNEITHP 75 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLS 304 D+ + + L+T + ++ + + T N + + Sbjct: 76 EDGDICRQKFEQLITQQIDEYTLEKRYRHRDGHWVYGIVTCYLRLDVKGNPLCAIAQIID 135 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEI 362 E E +D P F + NL + N ++ + S + + Sbjct: 136 ITQGKRSEQEIREKEEYLRLLLDNIPQQVF-WKDTNLVFRGCNRNWAIAAGLDSSESVVG 194 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L ++++ K + S + A + + + + Sbjct: 195 KTDFD-LFADAEIAEFYREKDRQVLESRTPEMNVVAPKQKL-GPGGRRIWLDVSRIPMLD 252 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + G+ + +++ K+ + Q ++ + D + + G N A Sbjct: 253 SQGNVLGILGVLEDITESKEIDEKLRLT--QFS--IDKSRDYVLFSDINGRFFYVNEAAC 308 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++ GY E++L +P + ++ + + TK + +++ Sbjct: 309 QILGYSKEELLTMEVGDIDPLASPGGWSISWDDLRDQG---SFTFESTHYTKTGQAIAVE 365 Query: 543 IIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I + L ++ + DI + KQ + L AK+ AE S KS+FLAR+SHE+RTPL Sbjct: 366 ITLSHLEYNHREYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPL 425 Query: 601 TAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 AI+GF+++++ + + P + E+ I RSG +L+++ND+L++SKIE+G+++L+ Sbjct: 426 NAILGFTQLMERELYHNPNIPLFDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLN 485 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 +L ++ +++L A+ K++ + + + IP I AD + ++Q +N+L NAI Sbjct: 486 PTNFNLISLLNSLREMLELPASSKKLTLDFAIDDQIPTYIYADEQKLRQCLINLLGNAIK 545 Query: 718 FTPSGGQI-IISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT GG I + ++ V DTG G+ E++ +PF Q + + +GT Sbjct: 546 FTVKGGVILRVKLGKFNHDFGQLWFEVEDTGPGIDPSEMDLLFEPFSQTETGRNSQ-QGT 604 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GLGL + + + G+ + S KGT+ Sbjct: 605 GLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 636 Score = 97.4 bits (241), Expect = 9e-18, Method: Composition-based stats. Identities = 42/395 (10%), Positives = 94/395 (23%), Gaps = 26/395 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYG 145 I GY E++ + +G +I + +++ D + L ++ + + Sbjct: 39 EISTEGYFLEVNTAFCRWVGYSQADLINLDFNEITHPEDGDICRQKFEQLITQQIDEYTL 98 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G +V + + + ++ Sbjct: 99 EKRYRHRDGH--WVYGIVTCYLRLDVKGNP--LCAIAQIIDITQGKRSEQEIREKEEYLR 154 Query: 206 HLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + + ++ V ++ + + Sbjct: 155 LLLDNIPQQVFWKDTNLVFRGCNRNWAIAAGLDSSESVVGKTDFDLFADAEIAEFYREKD 214 Query: 262 LTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ES PE + + ++ L + S D Sbjct: 215 RQVLESRTPEMNVVAPKQKLGPGGRRIWLDVSRIPMLDSQGNVLGILGVLEDITESKEID 274 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLD--- 371 E LT ++DK +G FY N + + Y + + G + L Sbjct: 275 EKLRLTQFSIDKSRDYVLFSDINGRFFYVNEAACQILGYSKEELLTMEVGDIDPLASPGG 334 Query: 372 -----APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + Y IA L +++N Q Sbjct: 335 WSISWDDLRDQGSFTFESTHYTKTGQAIAVEITLSHLEYNHREYGCAVVRDIRDRKQTEI 394 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + Q E ++ + L + L A Sbjct: 395 ALQQAKEAAETASRAKSEFLARMSHE-LRTPLNAI 428 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 46/143 (32%), Gaps = 5/143 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + + +L + GIA I+ EG L N A + GY D++ F Sbjct: 13 QQLETALAESQNRLRDLFHLAPIGIAEISTEGYFLEVNTAFCRWVGYSQADLINLDFNEI 72 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + ++++ + + ++ + + Sbjct: 73 THPEDGDICRQKFEQLITQQIDE-YTLEKRYRHRDGHWVYGIVTCYLRLDVKGNPLCAIA 131 Query: 557 TMHDISEWKQEKNKLSHAKKIAE 579 + DI++ K+ + ++ ++ Sbjct: 132 QIIDITQGKRSEQEIREKEEYLR 154 >gi|157273465|gb|ABV27364.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Chloracidobacterium thermophilum] Length = 813 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 124/767 (16%), Positives = 251/767 (32%), Gaps = 71/767 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + G S + +G A ++ M + + S ++ + I L+ + + Sbjct: 67 LGLDGRRLAWSPAGERILGYSAEEIQAMSVREFSHLVVPEHRARIRQALRDKLEGGLEEA 126 Query: 149 LWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + V +++ + ++ R+ + I+ + + ++ Sbjct: 127 HYEADFVAKDGRRVTLEVNSQLLF-RDGRPVAIQ--AILRDITNRKRIEQALRESEARYR 183 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYP 260 L E V + S + ++ Sbjct: 184 DLFENANDIVYVHDFEGRFLSINRGAERVLGYTPADTAYLTLTHIVAPEHRARALQAIAD 243 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLSAYFDE 317 L + + D N + T + + E Sbjct: 244 KLAGKAEMTQYELDVIAKNGQRVTLEVSSRLFYVHGKPVGIHGTARDVTKRRQMEKALRE 303 Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E D + + G + NP+ L Y+ + L L P+ Sbjct: 304 SEARYRTLFDSAQDVIYCHDLQGRVLEINPAAEKLFGYRREEA-RSVNALD--LVVPESR 360 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 L T + A L + + + N P + GI + Sbjct: 361 PAVLSAIDRLLAGHETTVRYEATL--LTRDGRRIILEFITWLVLENGKP--VAFQGIGRD 416 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R+++R + + I +A GI +++ +G IL NRAV Y E+++ + Sbjct: 417 LTERRLSERALRESEERFRQIFDAAPLGIVLVSLDGKILRANRAVCNWLEYTPEEVVGRR 476 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 T F+ + + + TK +++ R + + S Sbjct: 477 HTEFILPEDVEETMRLARRLAEDPKPSSFQAERRCLTKSGQVVWGRFTVVVVRDSGGKPQ 536 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ + + ++ HA+K+ A ++HE LT + G++ + Sbjct: 537 YLLGMIEDITQQRMLEEQVRHAQKM-----EAVGQLAAGIAHEFNNLLTVVAGYA-GLLE 590 Query: 613 QRFGPLGNPR-----YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +R P R YA I + + + LL + + H P+ L+E Sbjct: 591 RRLSPTSIERSSPDVLHRYAKDILTAVSRASVLTGQLLAFGR----RQQQHLAPLDLNEL 646 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 V + + +++ I I T+ A ++ ++AD + ++Q+ N+ NA P GG + + Sbjct: 647 VLDTVRMLRPLLEPH-ISIVTNLAPDLGIVVADRQQLEQVITNLAVNARDAMPKGGTLTL 705 Query: 728 ST-------------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +T T + V+L V DTGVGM+ + +PF Sbjct: 706 TTCNVWHESPPEMNNRTTFRQTTARDETLQMHPYVMLAVTDTGVGMSEEVRRRIFEPFFT 765 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GTGLGL + + ++ N G + S KGT I+ P Sbjct: 766 TKP----VGKGTGLGLSVVEGIIAQNKGFITVESEVGKGTTFRILLP 808 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 63/179 (35%), Gaps = 9/179 (5%) Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 +E + + + ++ I + SD I ++ +G L+ + A + Sbjct: 23 EAAQQRIAQLEAALQEAGRTIQALRESELRYREIFDGASDIILVLGLDGRRLAWSPAGER 82 Query: 484 LFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + GY E+I + F+ + + + L + L L + K+ + ++ Sbjct: 83 ILGYSAEEIQAMSVREFSHLVVPEHRARIRQALRDKLEGGLEEA-HYEADFVAKDGRRVT 141 Query: 541 LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L + + L + DI+ K+ + L ++ + +D + H+ Sbjct: 142 LEVNSQLLFRDGRPVAIQAILRDITNRKRIEQALRESEARYRDLFENANDIVYV--HDF 198 >gi|298248741|ref|ZP_06972546.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551400|gb|EFH85266.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 821 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 114/731 (15%), Positives = 251/731 (34%), Gaps = 49/731 (6%) Query: 97 EISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIE 153 ++ IG + R + + + L + Sbjct: 117 YTNQRWRDYIGFTVEQTQSDRWAYLQFIHPDDREGARAHRQHAQDTGEMYEHEERLRNSQ 176 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 T Y A+P+Y + + FG K ++ + L E Sbjct: 177 -TGTYRWFLTRAMPVYDEAGQLV--KWFGTCTDIDEQKRTEQRLKESEENWQTLAETVPQ 233 Query: 214 HSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + D +Q++ + ++ +Y D + E+ L + + +P Sbjct: 234 LVWRVQPDSWVDYVNQRACDYGQTTREQLLGHGWHYLLHPDDKERERVTLDHAFRTGIPY 293 Query: 272 QEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---- 324 + +F + + + + ++ ++ + E Sbjct: 294 EVEFRLREGQTGCYRWFLTRGMPVCDETGQVIKWFGTCTDIEEQKRAEQQLKESEENLRV 353 Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + P + L Y N + T + + + ++ G L A Sbjct: 354 LAETVPQLVWTTRADNRLDYCNQRYCEYT-HAAFEQLQGHGW------RQFLHPEEAEGI 406 Query: 384 VMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + L T + ++ + + G + D + Sbjct: 407 LALRHQTLETGEPFESECRLRNGQTGEYRWFLARGTPVRDETGQIVRWFGTNTDIEDQKR 466 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYPVEDILRKPF--TV 499 + + ++ +++++ GI + E +L N A L GY ED+ K Sbjct: 467 IEEALRQSQERIRALIDSNIIGIVSVEGEEEVLVEANEAFLHLTGYTQEDMRSKTLNRVK 526 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTM 558 S + E+ + LE + K+ L + + + + Sbjct: 527 ITPPEHASFFERAIQEVNARGQHTPLETEVIC--KDGSRLPVLVGSVIFQERPRQTISFV 584 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D S K+ + + K F++ SHE++TPLTA+ + + +++ Sbjct: 585 LDNSARKELEQR--------------KDAFISMASHELKTPLTALKLQTA-LLHRQLAKQ 629 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G P + ++ N V +V++LLD+SKI++G++ E V+LD + E +Q Sbjct: 630 GIPASAPALSNMEGQINKVTRLVDELLDVSKIQAGRLEYLQETVNLDALLREITETMQQT 689 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + RI++R ++ + D + Q+ +N++SNAI ++P + + + + + V Sbjct: 690 SPSHRIVVRGIVETSL---IGDRDRLGQVFINLISNAIKYSPDAKTVEMDLSASEDA-VT 745 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++VRD G+G+ + +K F ++ + +Q G G+GL + +V + G + S Sbjct: 746 IQVRDHGLGIPREQCDKIFDRFYRVTDPKQKAIHGLGMGLYIVAEIVKRHRGTITVDSEV 805 Query: 799 AKGTLIEIIFP 809 KG+ + P Sbjct: 806 GKGSTFTVTLP 816 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 28/368 (7%), Positives = 83/368 (22%), Gaps = 21/368 (5%) Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQYFGTL 292 ++ + T+ + + ++ Sbjct: 2 TPEQLQGDRWIACLHPADRQRTLEAWQTAIRTQTLYEVEYRMQQGRTGAYRWFLARGMPR 61 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSHGNL-FYANPS 347 ++N + ++ + E + P V N Y N Sbjct: 62 KDNQGTILHWFGTCTDIEDRKQAEQQLKASEENWRVLAETLPQLVMVARPNNQNEYTNQR 121 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWN 406 + + L D + + D RL Q Sbjct: 122 WRDYIGFTVEQ---TQSDRWAYLQFIHPDDREGARAHRQHAQDTGEMYEHEERLRNSQT- 177 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ + + G + + + +++++ ++ E + Sbjct: 178 -GTYRWFLTRAMPVYDEAGQLVKWFGTCTDIDEQKRTEQRLKESEENWQTLAETVPQLVW 236 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + + + N+ E +L + L + L + E Sbjct: 237 RVQPDSWVDYVNQRACDYGQTTREQLLGHGWHYLLHPDDKERERVTLDHAFRTGIP--YE 294 Query: 527 KITLGSTKEEKLLSLRIIIK-KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + + + + T DI E K+ + +L +++ Sbjct: 295 VEFRLREGQTGCYRWFLTRGMPVCDETGQVIKWFGTCTDIEEQKRAEQQLKESEENLRVL 354 Query: 582 SSHKSDFL 589 + + Sbjct: 355 AETVPQLV 362 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 34/414 (8%), Positives = 99/414 (23%), Gaps = 20/414 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD +++ + +SE + + W + ++ +++ +++ Sbjct: 205 TDIDEQKRTEQRLKESEENWQTLAETVP-QLVWRVQPDSWVDYVNQRACDYGQTTREQLL 263 Query: 115 GMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + + + + + T Y +P+ Sbjct: 264 GHGWHYLLHPDDKERERVTLDHAFRTGIPYE-VEFRLREGQTGCYRWFLTRGMPVCDETG 322 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 + + FG K ++ L E + + Sbjct: 323 QVI--KWFGTCTDIEEQKRAEQQLKESEENLRVLAETVPQLVWTTRADNRLDYCNQRYCE 380 Query: 231 PPHLRMKNKVSSLTEYYAHKDDV--LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 H + + H ++ + ++ L + E E + Sbjct: 381 YTHAAFEQLQGHGWRQFLHPEEAEGILALRHQTLETGEPFESECRLRNGQTGEYRWFLAR 440 Query: 289 FGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLF 342 +++ + + + + + + +D I L Sbjct: 441 GTPVRDETGQIVRWFGTNTDIEDQKRIEEALRQSQERIRALIDSNIIGIVSVEGEEEVLV 500 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 AN +FL LT Y D + L+ + P + + + + + Sbjct: 501 EANEAFLHLTGYTQEDM--RSKTLNRVKITPPEHASFFERAIQEVNARGQHTPLETEV-- 556 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 I + + + + + + +L + Sbjct: 557 ICKDGSRLPVLVGSVIFQERPRQTISFVLDNSARKELEQRKDAFISMASHELKT 610 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 36/411 (8%), Positives = 91/411 (22%), Gaps = 33/411 (8%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD ++ + +SE + W A L ++ + ++ Sbjct: 332 TDIEEQKRAEQQLKESEENLRVLAETVP-QLVWTTRADNRLDYCNQRYCEYTHAAFEQLQ 390 Query: 115 GMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + + L+ + + T Y P+ Sbjct: 391 GHGWRQFLHPEEAEGILALRHQTLETGEPFESEC-RLRNGQTGEYRWFLARGTPVRDETG 449 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + R FG ++ ++ L + + + ++ + + Sbjct: 450 QIV--RWFGTNTDIEDQKRIEEALRQSQERIRALIDSNIIGIVSVEGEEEVLVEANEAFL 507 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + + + E +S E+ +N + Sbjct: 508 HLTGYTQEDMR--------SKTLNRVKITPPEHASFFER-AIQEVNARGQHTPLETEVIC 558 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + + + +D +F+ + Sbjct: 559 KDGSRLPVLVGSVIF------QERPRQTISFVLDNSARKELEQRKD-------AFISMAS 605 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR------TCIAASARLHTIQWNR 407 ++ + + LL L + + + IQ R Sbjct: 606 HELKTPLTALKLQTALLHRQLAKQGIPASAPALSNMEGQINKVTRLVDELLDVSKIQAGR 665 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 L T + E M Q V I + + + +L + Sbjct: 666 LEYLQETVNLDALLREITETMQQTSPSHRIVVRGIVETSLIGDRDRLGQVF 716 >gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105] gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105] Length = 1085 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 120/685 (17%), Positives = 237/685 (34%), Gaps = 56/685 (8%) Query: 165 ALPIYSRNRE-----FSGFRGFGIV-------------HVNRVDNDPRALGKRLDKKFSH 206 A P+ ++ RE F G+ F I+ +A + D++F Sbjct: 248 AAPMKAQWREQTISLFLGYLAFCILAVLMVKASMTYQAQQVLAKEKAKADQQFNDERFQL 307 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 E + S + + L + L T Sbjct: 308 ATESAGIGVWEYNIQDKFIRWDSAMRKIYGVKDEQELVSYKEWLHYVVPEDVNKLGTVLL 367 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYF 315 ++++ + + T +N F + Sbjct: 368 EASKNQDTFQFNFNIRRASDGRIRHIQARAKTHRNTKGIPFRMIGVNVDVTVQRQFEDAL 427 Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E E + + I + G N + + Y + + + Sbjct: 428 REAEARFRSSFEWAAIGMAMLDFKGQFLQVNKALSEILGYSEEELLG--FSFDAITHPQD 485 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + +L I + + + N + Sbjct: 486 TMQHTHLVRDVLK---GRRHNYQLEKRYIHKDGH-VVWVHLSVSAVRNDKGRVIYFISQI 541 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + N+ + L ++ E ++ + + NR K P + + Sbjct: 542 QDISERKRNEATLIEREHFLRTLSECLPGLVSYWSTDLRCHFANRNHEKWSNIPADKMRG 601 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFS 551 + L + +HY+ +L + ++ + + + Sbjct: 602 QHMRKVLGEELFIHDHHYVLGVLKGEKQR---FERRKPLPSGGYADMLVHLIPDVLYGKV 658 Query: 552 SCYSLTMHDISEWKQEKNKLSHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAII 604 + +I+++K ++ +L + AE S K FLA +SHEIRTP+ AI+ Sbjct: 659 EGFFSISTNITDFKAQQRELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIM 718 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +++++ R +Y + I + +++L+++ND+LDIS++E+ K+ L L Sbjct: 719 GLLQLLEDTDL----QARQRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLL 774 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723 D+ +S+A L A EK I + S N P + D + QI N+LSNA+ FT G Sbjct: 775 DQVLSKATDLFAYRAEEKAIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEKG- 833 Query: 724 QIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +I + + +++ V+DTG+GM + +PF Q+ +S R G GLGL + K Sbjct: 834 RIHLQVQSVADGKQLQFSVKDTGIGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICK 893 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ ++ STP GT Sbjct: 894 NLVELMGGQIWVESTPGLGTTFHFT 918 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 112/426 (26%), Gaps = 32/426 (7%) Query: 71 ENTFVFDPIPRTVRFTWN------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 E+ F W +D G ++++ L + +G +++G ++ Sbjct: 424 EDALREAEARFRSSFEWAAIGMAMLDFKGQFLQVNKALSEILGYSEEELLGFSFDAITHP 483 Query: 125 LHIDPNNH-IGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 + H + D+LK + + + +G V + L+ + + F Sbjct: 484 QDTMQHTHLVRDVLKGRRHNYQLEKRYIHKDGH--VVWVHLSVSAVRNDKGRVIYF--IS 539 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVS 241 + A + L E G S F+ ++ + Sbjct: 540 QIQDISERKRNEATLIEREHFLRTLSECLPGLVSYWSTDLRCHFANRNHEKWSNIPADKM 599 Query: 242 SLTEYYAHKDDVLKTEKYP----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + L + +L E+ ++ + L + Sbjct: 600 RGQHMRKVLGEELFIHDHHYVLGVLKGEKQRFERRKPLPSGGYADMLVHLIPDVLYGKVE 659 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 F N A E E + D+ F AN S + T + Sbjct: 660 GFFSI--STNITDFKAQQRELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNA- 716 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 GL LL+ L + + + + I N L ++ Sbjct: 717 -----IMGLLQLLEDTDLQARQRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSR 771 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGIAIINR 470 F + E+ ++ K ++ + ++L IL Sbjct: 772 FLLDQVLSKATDLFAYRAEEKAIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTE 831 Query: 471 EGIILS 476 +G I Sbjct: 832 KGRIHL 837 >gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus Nitrospira defluvii] Length = 578 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 107/383 (27%), Positives = 180/383 (46%), Gaps = 12/383 (3%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + ++ + I+E D + + G I N +F P + + KP T ++ Sbjct: 178 LAQDEVRESEARTRMIIETALDAVITTDATGTINGWNTQAELMFDVPRTEAIGKPLTTYV 237 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557 P+ + +T L L + LG T + + I + L +++ Sbjct: 238 SAACPASGSTPITPYAGLVPGAILNRRSEMLGLTYQGTSFPVEIAMSCLAAGGTQQFTIF 297 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DISE KQ++ +L AK+ AE S KS FLA +SHEIRTP+ ++G +E++ Sbjct: 298 VQDISERKQQEERLCRAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPL-- 355 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N YA+ + SG +L I+ND+LD SKIE+G++ L + P L + ++E I L Sbjct: 356 --NDTQRRYAHTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHE 413 Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-- 734 A +K + + + +IP + D ++QI N++ NA+ FT +G + + Sbjct: 414 QARKKGLALSVTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTETG-TVAVFVRPDEGRP 472 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + V DTG+G+ EK F Q S + GTGLGL + K +V G+ + Sbjct: 473 GRVRIEVTDTGIGIPLQAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGL 532 Query: 795 FSTPAKGTLIEIIFPLYDTSHPH 817 STP +GT + ++ P Sbjct: 533 TSTPGQGTTFWFTISVDRSASPE 555 >gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1596 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 129/740 (17%), Positives = 258/740 (34%), Gaps = 34/740 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKT 147 + G ++ + +G M G +V + + R+ G Sbjct: 602 VSPEGRIEICNARALALLGLPPELMAGKPTTHEVLEHQWRSGEFAGAEEEVRRLMRAGGI 661 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 P + Y + + R +G + + + + Sbjct: 662 VPEP----HTYTRVRPNGTVLEIRTMPMAGGGLVRTYTDITARRQAEEALRESESRHRLI 717 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDV-LKTEKYPL 261 E ++ + D P ++ + E H +D Sbjct: 718 AENVSDVITLRRAGGDGALLYVSPAIRTVLGYAPEDFAARPAESLLHPEDRDRVAAVTAA 777 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDE 317 + + + + + + +Q L+ + A E Sbjct: 778 IDAARPTATSVHRLRHRDGHWVFVETALTWMQGEGARGARILAAMRDVSRRVAAEAAVRE 837 Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E L + G Y +P+ + Y+ D + + P Sbjct: 838 SEMLYRLLAETTSDVITRLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSA---VVHPDDL 894 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 L + + T + ++ + + Sbjct: 895 PALQDLARRLAAGEIAGEHVTTTFRTRHGRGG-FVWTEAGLSLMRDEGGAPVSIVCSLRD 953 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + +E + + E SD I +R+ + + A ++ GY E+I+ Sbjct: 954 VTARKAAEAALEASEARYRFLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTK 1013 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 + + + + L+ R ++ + + + L + Sbjct: 1014 PLDGVHPDDRAALAAT-LADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAE 1072 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y ++ D+SE +++ L A+ AE+ S K+DFLA +SHEIRTPL I+G+++++ + Sbjct: 1073 GYVASVRDVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLNGILGYTDLLLD 1132 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G A I +G +L IVND+LD SKIE+G++ L +P LD + + Sbjct: 1133 DPSLGGG---QRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTV 1189 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S+V+ +A +K I + PR ++ D ++QI LN+L+NA+ FT +G + ++ Sbjct: 1190 SVVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGS-VTLAVAC 1248 Query: 732 T----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + V DTG+G+ + E+ + F Q+ NS + GTGLGL ++K +V+ Sbjct: 1249 ESPPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVEL 1308 Query: 788 NMGKFYIFSTPAKGTLIEII 807 G + S ++GT Sbjct: 1309 MGGTIGVESVVSEGTTFWFT 1328 Score = 117 bits (294), Expect = 7e-24, Method: Composition-based stats. Identities = 53/533 (9%), Positives = 122/533 (22%), Gaps = 42/533 (7%) Query: 83 VRFTWNIDAHGYLKE--ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-- 138 +F ++ G + + +G ++G L P + + Sbjct: 343 AQFICRLETDGSFRLEACNRAAAARLGAAPEALVGRPL------GGALPAGRVARIEADL 396 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 R+ G G + P+ R + A + Sbjct: 397 RRCLAAGNPIRLQESGDGAGRVFEEVLTPLRDEAGRLD--RVLASIREITHLKRAEAETR 454 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKD 251 ++ EI + D + P ++L + Sbjct: 455 EAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEPGSVAPTLAAALGFCHPDDR 514 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + S++ + + + + + Sbjct: 515 PAVAASIEAQIASKQPATDALRIVR-PDGSIRHVVTRALCEFGPDGAVAALFGTLSDVTE 573 Query: 312 SAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + T++ V S G + N L L Sbjct: 574 LRRVEREAAEAASLLATTLESMDQGLIVVSPEGRIEICNARALALLGLPPELMAGKPTTH 633 Query: 367 STLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + + A + V + ++ N E Sbjct: 634 EVLEHQWRSGEFAGAEEEVRRLMRAGGIVPEPHTYTRVRPNG--------TVLEIRTMPM 685 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSK 483 + R + + + I E SD I + +G +L + A+ Sbjct: 686 AGGGLVRTYTDITARRQAEEALRESESRHRLIAENVSDVITLRRAGGDGALLYVSPAIRT 745 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + GY ED +P L + I + T ++ + + Sbjct: 746 VLGYAPEDFAARPAESLLHPEDRDRVAAVTAAIDAARPTATSVH--RLRHRDGHWVFVET 803 Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + M D+S + + ++ + + SD + R+ Sbjct: 804 ALTWMQGEGARGARILAAMRDVSRRVAAEAAVRESEMLYRLLAETTSDVITRL 856 Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 41/418 (9%), Positives = 100/418 (23%), Gaps = 21/418 (5%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVS 241 + + R RA F E + + + + + + + Sbjct: 317 LRLGRTLAQQRASETLFRAMFEAASEAQFICRLETDGSFRLEACNRAAAARLGAAPEALV 376 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 A + + L + P + + + ++ L++ + Sbjct: 377 GRPLGGALPAGRVARIEADLRRCLAAGNPIRLQ-ESGDGAGRVFEEVLTPLRDEAGRLDR 435 Query: 302 YLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356 L+ A E + + + + + + + + Sbjct: 436 VLASIREITHLKRAEAETREAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEP 495 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 A + A I + + Sbjct: 496 GSVAPTLAAALGFCHPDDRPAVAASIEAQIASKQPATDAL-----RIVRPDGSIRHVVTR 550 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + G + + R +R+ L + LE+ G+ +++ EG I Sbjct: 551 ALCEFGPDGAVAALFGTLSDVTELRRVEREAAEAASLLATTLESMDQGLIVVSPEGRIEI 610 Query: 477 TNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 N L G P E + KP + + ++ Sbjct: 611 CNARALALLGLPPELMAGKPTTHEVLEHQWRSGEFAGAEEEVRRLMRAGGIVPEPHTYTR 670 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 +L +R + T DI+ +Q + L ++ + + SD + Sbjct: 671 VRPNGTVLEIRTMP---MAGGGLVRTYTDITARRQAEEALRESESRHRLIAENVSDVI 725 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 26/378 (6%), Positives = 77/378 (20%), Gaps = 23/378 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146 G L +S + +G + D + + T Sbjct: 729 RAGGDGALLYVSPAIRTVLGYAPEDFAARPAESLLHPEDRDRVAAVTAAIDAARPTATSV 788 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L +G +V ++ A + G R + A + + + Sbjct: 789 HRLRHRDGH--WVFVETALTWMQGEGAR--GARILAAMRDVSRRVAAEAAVRESEMLYRL 844 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L E + P ++ + S++ + Sbjct: 845 LAETTSDVITRLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPALQDLARRL 904 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315 + + +++ + + A Sbjct: 905 AAGEIAGEHVTTTFRTRHGRGGFVWTEAGLSLMRDEGGAPVSIVCSLRDVTARKAAEAAL 964 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E + ++ Y +P+ + Y+ + + Sbjct: 965 EASEARYRFLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTKP------LDGV 1018 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D+ A L + + + + + + Sbjct: 1019 HPDDRAALAATLADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASV 1078 Query: 435 PEDVDTRINKRKMEIEVM 452 + + + +E+ Sbjct: 1079 RDVSERQRQAEALELARD 1096 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 45/516 (8%), Positives = 112/516 (21%), Gaps = 34/516 (6%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 +R + A G + + E + G+ + + ++ + L Sbjct: 118 PIRDIAVLGADGSVLVGTREHAEPAGDRS-------------YFTVHRDDPLAGLFIS-- 162 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 G + + + + F G + Sbjct: 163 -----PAFRDRAGDDRAIVVSRRLAL---PDGRFGGV--IAATLDVDYFRRFYRTMEVGP 212 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L V + D + + A + Sbjct: 213 GGVVALLGADGRPLVVHPWRDDGGDLPRLDLAAALPPGAEAGLVTEAADAQGVLRLVAYR 272 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + L + ++ T + +L A E L Sbjct: 273 RVEALPLVAVVGLAREDALGSWHRQVLVLTGIALAALGLTWLIGLRLGRTLAQQRASETL 332 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + F+ L + L+ P A Sbjct: 333 FRAMFEAASEAQFICRLE-----TDGSFRLEACNRAAAARLGAAPEALVGRPLGGALPAG 387 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + R C+AA + + + ++ E + Sbjct: 388 RVARIEADLRRCLAAGNPIRLQESGDGAGRVFEEVLTPLRDEAGRLDRVLASIREITHLK 447 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500 + + V +L E G I+ ++ +R V ++ G + Sbjct: 448 RAEAETREAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEPGSVAPTLAAALG 507 Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLT 557 + + + ++ T + + + + T Sbjct: 508 FCHPDDRPAVAASIEAQIASKQPATDALRIVRPDGSIRHVVTRALCEFGPDGAVAALFGT 567 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + D++E ++ + + + A + L VS Sbjct: 568 LSDVTELRRVEREAAEAASLLATTLESMDQGLIVVS 603 Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 37/385 (9%), Positives = 84/385 (21%), Gaps = 27/385 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK- 146 +D + +S +G ++ R V + + L Sbjct: 855 RLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPALQDLARRLAAGEIAGEHV 914 Query: 147 -TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 TT G +V + + + A + + ++ Sbjct: 915 TTTFRTRHGRGGFVWTEAGLSLMRDEGGAPV--SIVCSLRDVTARKAAEAALEASEARYR 972 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E + V + H DD Sbjct: 973 FLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDDRAALAATLAD 1032 Query: 263 TSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + ++ + + + + F L++ + Y++ S E Sbjct: 1033 LAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASVRDVSERQRQAEALE 1092 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 L + ++ ++ I G LLD P L Sbjct: 1093 LARDAAEQASRA-----------KTDFLASMSHEIRTPLNGILGYTDLLLDDPSLGGGQR 1141 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------GI 433 + + + + + + + PF + I Sbjct: 1142 RQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFARKKAI 1201 Query: 434 EPEDVDTRINKRKMEIEVMQLCSIL 458 R + + +L IL Sbjct: 1202 AVAVRLDGAAPRTLVGDQDRLRQIL 1226 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 37/402 (9%), Positives = 89/402 (22%), Gaps = 38/402 (9%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYG 145 D + +S + +G +++G + D L ++ Sbjct: 984 QADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDDRAALAATLADLAAGTRDVATS 1043 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G+ YV ++ + G+ V + Sbjct: 1044 RQRYRRRDGS--YVWVEAKFRLLRDAEGRAEGY--VASVRDVSERQRQAEALELARDAAE 1099 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-- 263 K + + + + SL + + +++ LLT Sbjct: 1100 QASRAKTDFLASMSHEIRT-PLNGILGYTDLLLDDPSLGGGQRRQAERIQSAGAALLTIV 1158 Query: 264 ------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S+ + + D L+ K++ + + + Sbjct: 1159 NDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFARKKAIAVAVRLDGAAPRTLVGD 1218 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYAN-------PSFLLLTKYKSVDDIEIAGGLSTLL 370 + L ++ G++ A + L L Sbjct: 1219 QDRLRQILLNLLNNAVKFTHAGSVTLAVACESPPGATACLRFAVSDTGIGIPRDKHERLF 1278 Query: 371 DAPKLSDNNAIKPV-----------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 DN+ + L I + + + T Sbjct: 1279 QRFSQVDNSIRRDFGGTGLGLAISKNLVELMGGTIGVESVVSE-----GTTFWFTVTLPV 1333 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 P + + +EI ++LEA Sbjct: 1334 GGAVAAPAAPGRAALAQLPARILLVEDLEINQDIARAVLEAA 1375 >gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1129 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 117/665 (17%), Positives = 243/665 (36%), Gaps = 63/665 (9%) Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 ++ E + P + L ++ + + L K L + Sbjct: 46 RRAEEIFGWSRDEAIGSAVAELIIPPQYLAQHQDGLRQFKSTGEGRLINNKMELTALRRN 105 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + + + +++ S L A + + + T D Sbjct: 106 GHEFPVEMIITQIEWHGQVIFNAFVRDVSDRKEAEQLIA-REKLEAALLQQASFSSSTSD 164 Query: 328 KCPIP--FFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V + G++ ++L + I + ++ Sbjct: 165 ALEDALRICVANLGDISGWPIGHAYLRHQGGNRLVSSRIWHLANRDHFLDLRDESEKQSF 224 Query: 384 VM------LYRSDRTCIAAS---------------------ARLHTIQWNRENSLAMTFI 416 V S + + A ++ + + + F Sbjct: 225 VRGEDLPGYVWSRGEPVWVTDFENEEIITQKRDFAALGVRSAFAFPVKLDGDVIAVVEFF 284 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + + I + + + E +L +I++++ D I +G I S Sbjct: 285 NTRLISPDLNLLALSRGVSNLIRHVIERVQWQEERTRLAAIVDSSGDAIIGKAPDGTITS 344 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N ++G+ E+++ + ++ L + L + + + + T K+ Sbjct: 345 WNNGAEVIYGWLEEEVIGETVSILLPPGMAREESEILEAMKTGR--RLDQFQTRRMRKDG 402 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++ + I + + + DI+ ++ + +LS AK AE+ + + +FLA V Sbjct: 403 TIIDVAITVSPIRGMDQQVVGSSSIERDITARRRREEELSKAKDEAEQATRAQGEFLANV 462 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTP+ AI+G E+ + PL +Y S + +L +VND+LD S++E+ Sbjct: 463 SHELRTPMNAILGMLELTLQENLTPLK----RDYLQTAKDSADSLLLLVNDILDFSRLEA 518 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G L P SL + EA+ + L A EK + + +P ++L D ++QI N+ Sbjct: 519 GHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQILTNL 578 Query: 712 LSNAIHFTPSGGQIIISTTH-TSNEEV-------------ILRVRDTGVGMTNYELEKAM 757 NAI FT G ++++ E+ V DTG+G+ + ++ Sbjct: 579 AGNAIKFTEQG-EVVVDVKLIEPAGEIPLPRLQPGEKALLEFSVSDTGIGIAVEDQKRIF 637 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSH 815 PF Q S GTGLGL + ++ G+ Y+ S P +G+ +I P+ + Sbjct: 638 APFAQADASTTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVILPVAE--- 694 Query: 816 PHDCI 820 P + + Sbjct: 695 PEESV 699 Score = 94.3 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 53/144 (36%), Gaps = 5/144 (3%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQN 504 + +L +I+++ D + ++ +G ++ NR ++FG+ ++ + + Sbjct: 13 ALWASDGRLQTIVDSAMDAVITMDIDGDVVDWNRRAEEIFGWSRDEAIGSAVAELIIPPQ 72 Query: 505 TPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHD 560 + L + S + + + + +II ++ + + D Sbjct: 73 YLAQHQDGLRQFKSTGEGRLINNKMELTALRRNGHEFPVEMIITQIEWHGQVIFNAFVRD 132 Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584 +S+ K+ + ++ K A Sbjct: 133 VSDRKEAEQLIAREKLEAALLQQA 156 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 41/446 (9%), Positives = 105/446 (23%), Gaps = 74/446 (16%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-----HIDPNNHIGDLLKRQNTW 143 +D G + + + + G + IG + ++ H D + + Sbjct: 35 MDIDGDVVDWNRRAEEIFGWSRDEAIGSAVAELIIPPQYLAQHQDGLRQFKSTGEGRLIN 94 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKR--- 199 + P+++ I E+ G F V + L R Sbjct: 95 NKMELTALRRNGHE-FPVEMIITQI-----EWHGQVIFNAFVRDVSDRKEAEQLIAREKL 148 Query: 200 --------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 D L + + + + +++ L Sbjct: 149 EAALLQQASFSSSTSDALEDALRICVANLGDISGWPIGHAYLRHQGGNRLVSSRIWHLAN 208 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT------------------INLNQYTKKQ 287 D ++EK + E+ L + Sbjct: 209 RDHFLDLRDESEKQSFVRGEDLPGYVWSRGEPVWVTDFENEEIITQKRDFAALGVRSAFA 268 Query: 288 YFGTLQNNSKESFEYLSHR-------------------NHPSLSAYFDEGENLTPETVDK 328 + L + E+ + R H + E VD Sbjct: 269 FPVKLDGDVIAVVEFFNTRLISPDLNLLALSRGVSNLIRHVIERVQWQEERTRLAAIVDS 328 Query: 329 CPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G + N ++ + + I ++L P ++ ++ Sbjct: 329 SGDAIIGKAPDGTITSWNNGAEVIYGWLEEEVIGE---TVSILLPPGMAREE--SEILEA 383 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + ++ + + + + + + IE + R + ++ Sbjct: 384 MKTGRRLD-QFQTRRMRKDG-TIIDVAITVSPIRGMDQQVVGSSSIERDITARRRREEEL 441 Query: 448 EIEVMQLCSILEATSDGIAIINREGI 473 + A + +A ++ E Sbjct: 442 SKAKDEAEQATRAQGEFLANVSHELR 467 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 24/245 (9%), Positives = 60/245 (24%), Gaps = 10/245 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTL 149 G + + G ++IG + + + I + +K +T Sbjct: 338 PDGTITSWNNGAEVIYGWLEEEVIGETVSILLPPGMAREESEILEAMKTGRRLDQFQTRR 397 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT + V I ++ PI +++ G I + + Sbjct: 398 MRKDGTIIDVAITVS--PIRGMDQQVVGSS--SIERDITARRRREEELSKAKDEAEQATR 453 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + + + + + + LL ++ Sbjct: 454 AQGEFLANVSHELRTPMNAILGMLELTLQENLTPLKRDYLQTAKDSADSLLLLVNDILDF 513 Query: 270 PEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E H + + TL + E L R + + + Sbjct: 514 SRLEAGHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQ 573 Query: 325 TVDKC 329 + Sbjct: 574 ILTNL 578 >gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1066 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 104/598 (17%), Positives = 216/598 (36%), Gaps = 41/598 (6%) Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 L +D ++ + E L + ++ Sbjct: 341 LQFPSFEEDSGKILAAAVRGAFDKKAEQSAEVVFRTPLGLKLCQCRLIPERDADGRVTSV 400 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361 L + + +E ++ + + G AN F +T Y + I Sbjct: 401 LGILRDITQAREQEE---RYRVVFEQAAVGLNRIDLDGRFTEANGKFCEITGYDRHELIG 457 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + D + + +A ++ + ++ + + Sbjct: 458 R-----SFTHVVHADDISENIDLFRSLMAGKIDEFAAEKQVVRKDG-TTVWVNVTISLER 511 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 N + G+ + + ++++ + ++ E + D I I ++ N A+ Sbjct: 512 NALGRLVGTIGVMEDITARKRTEQELYRREQEFRALSENSPDIIVRIGKDLKRSYVNPAI 571 Query: 482 SKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 +L G + L L ++L+ ++ E + Sbjct: 572 GRLHGMSPDHYLGMHVREPARPDREEFRRAYEELLKQVLASGREESHEYSLTTING-LRH 630 Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 R+ D++ +K+ + +L A+ AE + KS+FLA +SHEI Sbjct: 631 FHCRLTPEFAPSGEVVSVLSISRDVTAYKELEQELRRARNEAEVANHAKSEFLAAMSHEI 690 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ IIG +++ + + Y +I S + +L+++ND+LD+SK+ESG+M Sbjct: 691 RTPMNGIIGMTDLALMGGC----DSKASSYLGFIKESAHSLLELINDILDLSKVESGRME 746 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715 L + L +++ + ++L A K + + +P + + D ++Q+ N++ NA Sbjct: 747 LEKKAFDLRKSLESLLQPLRLSAQRKGVELSWYVGPEVPELLMGDDLRLRQVFTNLVGNA 806 Query: 716 IHFTPSGGQIIISTTHTS-------------NEEVIL--RVRDTGVGMTNYELEKAMKPF 760 + FT G I I+ EE+ L V DTG+G+ +L+ + F Sbjct: 807 LKFTSWGS-ITIAIGVAEAADSRKTPEPGASQEEISLQATVSDTGIGIPPDKLQHVFESF 865 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816 + GTGLGL + K +V+ G + S P +G++ + + P Sbjct: 866 ATL--GHDKEYGGTGLGLAITKKLVEIMGGTIWAESQPGQGSVFGFTVRLARASEAEP 921 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 33/296 (11%), Positives = 72/296 (24%), Gaps = 22/296 (7%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW--------NIDAHGYLKEISEELPK 104 D + S L R + ID G E + + + Sbjct: 389 PERDADGRVTSVLGILRDITQAREQEERY--RVVFEQAAVGLNRIDLDGRFTEANGKFCE 446 Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPID 162 G ++IG V I N + L + + + + +GT ++V + Sbjct: 447 ITGYDRHELIGRSFTHVVHADDISENIDLFRSLMAGKIDEFAAEKQVVRKDGTTVWVNVT 506 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 ++ + G G++ R +++F L E + Sbjct: 507 ISLE--RNALGRLVGT--IGVMEDITARKRTEQELYRREQEFRALSENSPDIIVRIGKDL 562 Query: 223 DIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 H + + + D + + ++ +E+ H +L Sbjct: 563 KRSYVNPAIGRLHGMSPDHYLGMHVREPARPDREEFRRAYEELLKQVLASGREESHEYSL 622 Query: 281 ----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 S E LS + ++ + Sbjct: 623 TTINGLRHFHCRLTPEFAPSGEVVSVLSISRDVTAYKELEQELRRARNEAEVANHA 678 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 29/394 (7%), Positives = 75/394 (19%), Gaps = 24/394 (6%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILH 126 S + D I+ + G A IG + + Sbjct: 293 QSGTGYRLLVENSP-DIICRFDRKLLCTYINPAVEAMTGAPADTFIGDYLQFPSFEEDSG 351 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + ++ + G L +P + + G I+ Sbjct: 352 KILAAAVRGAFDKKAEQSAEVVFRTPLGLKL---CQCRLIPERDADGRVTSVLG--ILRD 406 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + + + ++ + + + + Sbjct: 407 ITQAREQEERYRV----VFEQAAVGLNRIDLDGRFTEANGKFCEITGYDRHELIGRSFTH 462 Query: 247 YAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESF 300 H DD+ + L+ + ++ + L Sbjct: 463 VVHADDISENIDLFRSLMAGKIDEFAAEKQVVRKDGTTVWVNVTISLERNALGRLVGTIG 522 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359 E + P + Y NP+ L D Sbjct: 523 VMEDITARKRTEQELYRREQEFRALSENSPDIIVRIGKDLKRSYVNPAIGRLHGMSP-DH 581 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + + + + L TI Sbjct: 582 YLGMHVREPARPDREEFRRAYEELLKQVLASGREESHEYSLTTI----NGLRHFHCRLTP 637 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + E + I + + ++++ + Sbjct: 638 EFAPSGEVVSVLSISRDVTAYKELEQELRRARNE 671 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHY 512 ++E + D I +R+ + N AV + G P + + E+++ ++ Sbjct: 298 YRLLVENSPDIICRFDRKLLCTYINPAVEAMTGAPADTFIGDYLQFPSFEEDSGKILAAA 357 Query: 513 LTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569 + Q+ + T KL R+I ++ + DI++ ++++ Sbjct: 358 VRGAFDKKAEQS--AEVVFRTPLGLKLCQCRLIPERDADGRVTSVLGILRDITQAREQEE 415 Query: 570 KLSHAKKIA 578 + + A Sbjct: 416 RYRVVFEQA 424 >gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L] gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L] Length = 953 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 129/791 (16%), Positives = 245/791 (30%), Gaps = 92/791 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNHIGDLLKRQNT 142 W+ + S + +G IG + +D + Q T Sbjct: 174 IWDWNPKTNETFFSSRCKEMLGYDENYDIGNYNHQWWTHIHPDDVDQVIKAMEDHLAQKT 233 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 Y Y I ++ + R G + + +K Sbjct: 234 SYYVQEYRLHCNDGSYKWILDQGQALWDEAGDPV--RVVGSITDISDRKQTEEALQENEK 291 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS----------------PPPHLRMKNKVSSLTEY 246 E + S ++ S S P L Sbjct: 292 ALKSNQERLEAIMSSLQDVVWSVSLPSGILRYVNIAFEQVYGRPTFELFSDQDNLWRQFI 351 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 D ++ + + S + N + ++ S Sbjct: 352 VPVDRDRVEKAWRAVQENRRESWDLEYRIQLSNGEIRWLNDRAHVVIRDNGTSVHLHGIT 411 Query: 307 NHPSLSAYFD----------------------EGENLTPETVDKCPIPFFVYSH-GNLFY 343 + + E E + P + G + Sbjct: 412 TDITKRKQQEAELQQLNRELEIRVQQRTAALLESEQRFRSLFESAPDFIHILDTQGMIEQ 471 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 NP+ + + Y + I L + PV+L + Sbjct: 472 VNPAVIQQSGYSESELIGNR--LEEFFTPRYQNICQQEFPVLLEQGTHRQ------EIEF 523 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCS 456 L + ++ + + + + ++ + S Sbjct: 524 VCKNGTVLTTDSSCSVVHDTQGNISYILVLQRDISSRKRFEEERTQLIASLQESERRWRS 583 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTE 515 +LE + ++R+G + N +L Y ++L K F FL + + Y + Sbjct: 584 LLENVRLVVVGLDRQGKVEYVNPFFLELTKYTAAEVLGKDWFENFLPNSQQQSVQQYFQD 643 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 IL D + + L +K+EK+++ + + DI+E + Sbjct: 644 ILDPDFQSHYQHSILTKSKQEKIIAWNNTLLQNVQGEAIGTMSIGEDITERYAIE----- 698 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 K +F + VSHE+RTPLT+I G + + + R S Sbjct: 699 ---------RMKDEFTSVVSHELRTPLTSIHGAL-NLLSTGLIQPQSERGQRVIGIAADS 748 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-- 691 ++ +VND+L++ ++ESGK+ L +PV+ E + +A+ VQ+ AN I + S Sbjct: 749 AERLVRLVNDILELERLESGKIRLSKQPVNAAELMVKAVDQVQVMANRAGIKLEVSPQAI 808 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------------VI 738 + AD + Q+ N+LSN I F+ G + ++ EE ++ Sbjct: 809 ESEIEFEADSDRIIQVITNLLSNGIKFSDRGSSLWLTVELQHPEELETTSPLDPNSATIL 868 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+D G G+ +LE F Q+ S + GTGLGL + + +V+ + GK ++ ST Sbjct: 869 FTVKDQGRGIPADKLESIFGRFQQVDASDARKKGGTGLGLAICRNIVEQHGGKIWVESTV 928 Query: 799 AKGTLIEIIFP 809 +G+ P Sbjct: 929 GEGSSFYFTLP 939 Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 56/177 (31%), Gaps = 11/177 (6%) Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + ++ + + + ++ + + L+ + GI N + + + Sbjct: 133 AGQEPLNQELKSQIEECILVEQSLRKREQRWQLALQGANQGIWDWNPKTNETFFSSRCKE 192 Query: 484 LFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + GY + + + + + + + L+ + + Sbjct: 193 MLGYDENYDIGNYNHQWWTHIHPDDVDQVIKAMEDHLAQ-KTSYYVQEYRLHCNDGSYKW 251 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + L + ++ DIS+ KQ + L +K K + + + A +S Sbjct: 252 ILDQGQALWDEAGDPVRVVGSITDISDRKQTEEALQENEKAL-KSNQERLE--AIMS 305 Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 77/274 (28%), Gaps = 19/274 (6%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 L+SE F F +D G +++++ + + G ++IG RL + + Sbjct: 443 LESEQRFRSLFESAP-DFIHILDTQGMIEQVNPAVIQQSGYSESELIGNRLEEFFTPRYQ 501 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV--- 184 + +L Q T + GT + D + ++ S ++ Sbjct: 502 NICQQEFPVLLEQGTHRQEIEFVCKNGT--VLTTDSSCSVVHDTQGNIS---YILVLQRD 556 Query: 185 -----HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MK 237 A + ++++ L E + + + L Sbjct: 557 ISSRKRFEEERTQLIASLQESERRWRSLLENVRLVVVGLDRQGKVEYVNPFFLELTKYTA 616 Query: 238 NKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 +V + + + + + + Q T + + LQN Sbjct: 617 AEVLGKDWFENFLPNSQQQSVQQYFQDILDPDFQSHYQHSILTKSKQEKIIAWNNTLLQN 676 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E+ +S + + ++ V Sbjct: 677 VQGEAIGTMSIGEDITERYAIERMKDEFTSVVSH 710 >gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10] Length = 1070 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 127/749 (16%), Positives = 253/749 (33%), Gaps = 45/749 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146 D G + ++ + G ++ G + D + + ++ + Sbjct: 180 TDRDGVIDWVNPAFERLSGYKLAEVRGRLPGTFLLCPNSDSGAVKALAEAVRDGRECQVE 239 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + I+L PI + +GF + + R R ++ Sbjct: 240 LVNRAKNGAEYTILIEL--TPIRDEDGCCTGFM--SVQTDITAQIETRERLSRALRESQS 295 Query: 207 LHEIKKGH--SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L ++ + H SV + + + + + Sbjct: 296 LMDVIRQHTVFSVTDPAGVVTDVNDAFCQQSGYTKEEILGKTHQTLLSSGMHPDAFWVEM 355 Query: 262 LTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315 ++ ++ P + + + + N E Y+ N + A Sbjct: 356 RSTIKAGRPWRGEICNRNKSGELFWVDSIVAPQMNAGGEIERYIFIRFDITNRKHIEAGL 415 Query: 316 DEGENLTPETVDKCP-------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + ++++ I + + D + Sbjct: 416 AASQRQLEASLERLSAVTELGGIGSWEVDLDTMTPIWDDITRKIHEVDGDYVPNMDTAIN 475 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + T L I + P + Sbjct: 476 FYAPESRGPISDA----VAHCVETGEPWDLELPLITATNRRIWVRAVGRRVLRDGKP--I 529 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGY 487 G + + R + ++ + +L LE++ G+ I G + +LFG Sbjct: 530 RLVGSFQDVSERREREEELRLISTRLEVALESSGIGVWDICPPTGEY-HWDDGSRRLFGI 588 Query: 488 PVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--- 542 + P F + + ++ L + + + + +R Sbjct: 589 DRDSANPAPDDWFNGIHPDDREAVSAGLANAYATKTH--VRREYRYRRSDGGYRHIRSFG 646 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + ++L + D+S ++ L A++ AE S KS FLA +SHEIRTPL Sbjct: 647 VYRERLDAPPIITGVHLDVSADIEQAAALELARERAESASYAKSQFLANMSHEIRTPLNG 706 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G ++V+ + + I SG + D+++D+LDISKIESG + L Sbjct: 707 VLGMTQVLHMTEL----TEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAF 762 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 + E V+ + +L A EK++ + S A ++ +++ D + ++QI +NI+ NA+ FT S Sbjct: 763 EMPELVAMVSDITRLRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDS 822 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G ++ I + + V R+ DTG G+ L F Q NS + GTGLGL + Sbjct: 823 G-RVSIDIRAGAEDVVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAIC 881 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V G+ + S P +G+ PL Sbjct: 882 HELVTLMGGEIGVESVPGEGSTFWFKLPL 910 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 46/357 (12%), Positives = 97/357 (27%), Gaps = 19/357 (5%) Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 +V D+ L T + + + +P TL ++ Sbjct: 84 EVHDARANPLFADNPLVTGEPHIR--GYAGVPISLPTGEKLGTLCAIHDEPLTLDETARN 141 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 L+ + E+ V G + + NP+F L+ YK Sbjct: 142 RLISLARLIEELIRERVGAREHERLALVARHTHNSVVITDRDGVIDWVNPAFERLSGYKL 201 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + G L SD+ A+K + D + Sbjct: 202 AEVRGRLPGTFLLCPN---SDSGAVKALAEAVRDGRECQVELVNRA---KNGAEYTILIE 255 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGII 474 ++ ++ + + ++ + + S+++ + + G++ Sbjct: 256 LTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRESQSLMDVIRQHTVFSVTDPAGVV 315 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 N A + GY E+IL K L P + + Sbjct: 316 TDVNDAFCQQSGYTKEEILGKTHQTLLSSGMHPDAFWVEMRSTIKAGRPWRG--EICNRN 373 Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K +L + I+ + Y DI+ K + L+ +++ E S Sbjct: 374 KSGELFWVDSIVAPQMNAGGEIERYIFIRFDITNRKHIEAGLAASQRQLEASLERLS 430 Score = 78.9 bits (193), Expect = 4e-12, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 81/290 (27%), Gaps = 9/290 (3%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + + + + A ++ +L + S + L Sbjct: 6 EEDRLAALHALGLLDTGVEAGYEAITDLVTAVTGARMAAVSLVDRDR--QWFKSAVNLPA 63 Query: 354 YKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 ++ A + + N L + + ++ + Sbjct: 64 PETPRSWAFCHYAIQQDDIYEVHDARANPLFADNPLVTGEPHIRGYAGVPISLPTGEKLG 123 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + E +L + T + + I +R Sbjct: 124 TLCAIHDEPLTLDETARNRLISLARLIEELIRERVGAR-EHERLALVARHTHNSVVITDR 182 Query: 471 EGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G+I N A +L GY + ++ + P T L N+ S L E + +E + Sbjct: 183 DGVIDWVNPAFERLSGYKLAEVRGRLPGTFLLCPNSDSGAVKALAEAVRDGRECQVELVN 242 Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKI 577 E + + + + + + DI+ + + +LS A + Sbjct: 243 RAKNGAEYTILIELTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRE 292 >gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium ferrooxidans DSM 13031] Length = 932 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 132/805 (16%), Positives = 262/805 (32%), Gaps = 75/805 (9%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF----VFDPIPRTVRFTWNIDAHG 93 K + C ++ E + N + V R V Sbjct: 26 KVAASDNCQKELAETKEAAAASEMLHRNLIDYMHNGYACCRVVTEKGRPVDLI------- 78 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYGKTTLW 150 E+++ G +IG ++ +V + + +++ + + Sbjct: 79 -HVEVNKGYENLTGLKN--VIGRKITEVIPGIADSNPELLENHFRVVESGIAEKFEIYIE 135 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 P L+ + IY + ++ I + +KKF + E Sbjct: 136 P-----LHKWYE---STIYCPEKGYT----VAIFDDITKRKQAEQALQNSEKKFRSITEQ 183 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + I + ++V ++ + + Sbjct: 184 MSEIVFITDSSGQISFISPAIEKITDYKPHEVIGQRFTDFLSEEEVPSALSAYKEVMLKQ 243 Query: 269 LPEQED------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 F +++ Y + Y GT+ S R Sbjct: 244 STTHVIVLKFMRKNGTFFFGEVHVQYYHESGYSGTIGVIHDISERNRCERTRIEYEKKLL 303 Query: 317 EGENLTPETVDKCPIPFFVYS---HGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 +G+ D FV G+ Y N + T K+ + I L Sbjct: 304 DGKQFLQNIYDTVNHSVFVIDVLPDGSYRYKSINRLHEIRTGLKN-EAISGKSPREVL-- 360 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P ++ + + I N Sbjct: 361 EPDVAATVTGYYDRCIHKGSSTEYEETHMFK-----GKLSWWRTILNPVRNDSGHIYRII 415 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + ++ + K++ L ++ + + I + EG I N ++ GY ++ Sbjct: 416 GTSTNITEHKLTEEKLKT----LSFAIQQSPTVVVITDPEGNIEYINPTFTEHTGYTEKE 471 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + + + + + K +L I+ + Sbjct: 472 VIGQNPRILKSGLMEDSVYEEFWKTILAGN--VWHGEFHNKKKNGELYWEDAIVSAIVNQ 529 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + DI+E K+ L +K+ AE+ K+ FLA +SHEIRTP+ I+GF+ Sbjct: 530 KGVITNFVAVKEDITEKKKLWVDLIASKEKAEESDRLKTAFLANISHEIRTPMNGILGFA 589 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++K L EY I++SG +L ++ND++DIS+IE+G+ +H EP +++ Sbjct: 590 ELLKEPH---LSGEEQAEYIELINQSGKRMLALINDIVDISRIEAGETMIHVEPTHVNKL 646 Query: 668 VSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + A K +L+ + ++ I D + QI N++ N + F+ G Sbjct: 647 LHSLCTFFRPLAANKNLLLSCNNGLSDEECVIETDSAKLTQILTNLVQNGLKFSVEG--- 703 Query: 726 IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + + V D+G+G+ E + F Q+ NS EG+GLGL ++KA Sbjct: 704 EVRVGYIRKEDLLEFSVSDSGIGIPESMKESIFERFRQVDNSLTRHHEGSGLGLSISKAY 763 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+ G + S G+ P Sbjct: 764 VEMLGGTIRVESGEGNGSTFIFTLP 788 >gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 580 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 190/386 (49%), Gaps = 5/386 (1%) Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLF 485 + E + R + ++ + +I E+ SDG+ I + NRA+ ++ Sbjct: 196 AERTRELINEINERRQAEECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRML 255 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GY +++LR ++ L ++ E + I Sbjct: 256 GYREDELLRLSIADIHPEDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISP 315 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 L D++E ++ + A+ AE+ KSDFLA +SHE+RTPL ++IG Sbjct: 316 IILYGKPHLIGAFRDVTERRKL-RESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIG 374 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSEV++++ +GP+ N + EY N I SG +L ++ND+LD+SK+ESGKM L SL Sbjct: 375 FSEVLQDELYGPM-NEKQREYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLR 433 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +++++ + A + I F I+AD R +KQI N+LSNAI FTP+GG Sbjct: 434 DMLGDSLAMFKEKALRSAVGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGT 493 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + +S + V + V DTG+G+ ++ K KPF Q+ + EGTGLGL L+K + Sbjct: 494 LQVSARRMPD-FVEIAVADTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRL 552 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ + G+ + S G+ PL Sbjct: 553 VELHGGRIRVKSKFGTGSRFSFTIPL 578 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 59/222 (26%), Gaps = 16/222 (7%) Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 D +T + + T E + +E Q + T+ ++E ++ R Sbjct: 155 DRAQTLSFLISTYESAVWQNRELSTVQKQLQTLNEMLEETIAERTRELINEINERRQ--A 212 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIE-------- 361 E E + + N + + Y+ + + Sbjct: 213 EECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRMLGYREDELLRLSIADIHP 272 Query: 362 --IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 L + + + + + + R D + A + I + L F Sbjct: 273 EDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISPIILYGKPHLIGAFRDVT 332 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + E + + R + +L + L + Sbjct: 333 ERRKLRE--SEIARLAAEEACRTKSDFLANMSHELRTPLNSV 372 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 11/113 (9%), Positives = 37/113 (32%), Gaps = 3/113 (2%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTL 149 + + + +G +++ + + D+ P L+ + + + + Sbjct: 241 DHKFYMCNRAICRMLGYREDELLRLSIADI-HPEDKLPRAIRLFERELQGEISVAEELPV 299 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G+ Y ++++ + +Y + FR R R + + Sbjct: 300 QRKDGSVFYADVNISPIILYGKPHLIGAFRDVTERRKLRESEIARLAAEEACR 352 >gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 977 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 106/534 (19%), Positives = 195/534 (36%), Gaps = 39/534 (7%) Query: 311 LSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E E+ D+ + G + N Y D I S Sbjct: 286 AIRARAESEDRFRSVFDQQFQFMAILTPEGRVIDINELVRRFQGYAREDFIGQLFWESPA 345 Query: 370 LDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 P+ + + D I Q Sbjct: 346 WRDYPEWREIWPKRLAQATTMDGPLITHDI----YQKRNGEIRMADAATTAIRGPDGAVR 401 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + R + + +L +L D + + + +G L+ N LFG P Sbjct: 402 WYVIQATDTTERRRAEAALRESEERLRMLLRRIPDLVWLKDPDGRYLTCNARFETLFGRP 461 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +I+ K F+++ ++ + E+ + + ++++ + Sbjct: 462 EAEIIGKTDYDFVDRAQADFFRANDLAAIAAGGPRVNEEEIVF-AGDGHRERIQVVKTPV 520 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKS 586 + DI+E ++ + +L + AE+ + K Sbjct: 521 HDADGTVIGVLGIARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERLAQSKG 580 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTP+ A++G + +++ Q E A I RSG +L I+ND+LD Sbjct: 581 EFLANMSHEIRTPMNAVLGLAYLLERQPL----PDEAHELARQIHRSGQSLLHIINDILD 636 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 SKIESG++ + P L E + +++V A +K I + ++ ++ D + Sbjct: 637 FSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLESSLVGDPLRLG 696 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFG 761 QI +N+ SNA+ FT G Q+ + + + VRDTG+G+ +PF Sbjct: 697 QILINLTSNAVKFTSDG-QVEVRVESIARSHTEVTLRFTVRDTGIGIDPETQAHLFQPFT 755 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 Q S R G+GLGL + + + + G+ + S P +G+ + T H Sbjct: 756 QADASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLELTFGLTEH 809 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 34/321 (10%), Positives = 77/321 (23%), Gaps = 33/321 (10%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + +SE W D G + G ++I Sbjct: 408 TDTTERRRAEAALRESEERLRMLLRRIP-DLVWLKDPDGRYLTCNARFETLFGRPEAEII 466 Query: 115 GMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G D D D N + + + ++ +G + + P++ + Sbjct: 467 GKTDYDFVDRAQADFFRANDLAAIAAGGPRVNEEEIVFAGDGHRERIQVV--KTPVHDAD 524 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 G G I ++ L + + + + + +Q Sbjct: 525 GTVIGVLG--IARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERLAQSKGEF 582 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 M +++ + +L+ + P E +Q + Sbjct: 583 LANMSHEIRTPMNAVLGLAYLLERQPLPDEAHE------------------LARQIHRSG 624 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352 Q+ + L S + E +D + Sbjct: 625 QSLLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAID--------L 676 Query: 353 KYKSVDDIEIAGGLSTLLDAP 373 + +D+E + L Sbjct: 677 VIRPPEDLESSLVGDPLRLGQ 697 Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 36/365 (9%), Positives = 91/365 (24%), Gaps = 24/365 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-------HIGDLLKRQNTW 143 G + +I+E + + G IG + D + Sbjct: 313 PEGRVIDINELVRRFQGYAREDFIGQLFWE--SPAWRDYPEWREIWPKRLAQATTMDGPL 370 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G D A I + + A + +++ Sbjct: 371 ITHDIYQKRNGEIRMA--DAATTAIRGPDGAVRWY--VIQATDTTERRRAEAALRESEER 426 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVL---KTEK 258 L ++ + + L R + ++ T+Y + Sbjct: 427 LRMLLRRIPDLVWLKDPDGRYLTCNARFETLFGRPEAEIIGKTDYDFVDRAQADFFRAND 486 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + E+E + ++ + + + L + ++ Sbjct: 487 LAAIAAGGPRVNEEEIVFAGDGHRERIQVVKTPVHDADGTVIGVLGIARDITEMRRVEQE 546 Query: 319 ENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 +++ + L + FL ++ + GL+ LL+ Sbjct: 547 LEQHRHHLEELVAERTEELTQARLEAERLAQSKGEFLANMSHEIRTPMNAVLGLAYLLER 606 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L D ++RS ++ + + + + IPF+ + G Sbjct: 607 QPLPDEAHELARQIHRSGQSLLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVG 666 Query: 433 IEPED 437 D Sbjct: 667 TSAAD 671 >gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans Z-2901] Length = 449 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 167/372 (44%), Gaps = 26/372 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-Q 503 R + +L +IL G+ +++R+G ++ N+ + LFG KP + Sbjct: 96 RAINEGEKRLTAILAGIKAGVMVLDRDGRVILVNKGLENLFGKLNFTGEPKPLLEVIRNY 155 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561 + L + + + K + + + K DI Sbjct: 156 ELEKFLKEALANLKE------MTREIEFLLPNSKTILIHVTPLKDEHDQKVGLVAVFDDI 209 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ + +S+F+A VSHE+RTPLT+I GF E + + Sbjct: 210 TEERKLE--------------KMRSEFIANVSHELRTPLTSIKGFLETLLDGALEDKTIA 255 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + ++ + +++DLL +SKIE+ K++ +P+ L E + + L + E Sbjct: 256 K--HFLQIMNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEE 313 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K + S N+P +LAD + Q+ +N++ NAI +TP+GG+I ++ V + V Sbjct: 314 KELSFIISLPENLPLVLADGDMISQVLINLIDNAIKYTPAGGKIEVTAAVK-GSWVEVVV 372 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ ++ + F ++ ++ GTGLGL + K +++ + GK ++ S +G Sbjct: 373 KDTGIGIPEESQKRIFERFYRVDKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEG 432 Query: 802 TLIEIIFPLYDT 813 + P+ T Sbjct: 433 SAFGFTIPIAQT 444 >gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1759 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 122/774 (15%), Positives = 270/774 (34%), Gaps = 49/774 (6%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 SE F D G + ++ L KT+G KM+G + + Sbjct: 752 AASEREFRTLAESLPDNIV-RYDLEGRVIYVNPVLEKTLGTIVSKMLGTTVRERFPNGEY 810 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 D + D + + +NL++ + + N E G G Sbjct: 811 DDYAQLLDAVLTSGEIGEIEKIVTPPYSNLHLVHSIRMIAECDENGEVIGVLAIG--RDI 868 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + ++K+ L + + V I + + ++ L+E Sbjct: 869 TERKLAEQALRESEEKYRTLIQKIQAAVVVHGADTQILTFNL------VAQEILGLSEDQ 922 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDF------------------HTINLNQYTKKQYF 289 + + + + ++ P++ Sbjct: 923 LYGKTAIDPVWHFFHENGCAASPDEYPVNKVLASGKALKNYVLGVHRPGRQQDVWVLVNA 982 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPS 347 + + + + + ++ L +++ ++ N Sbjct: 983 DPVFGKDGKITQVIITFIDITQRKQAEQRLWLVDFALNQVREAVYIINLQDHRFLNVNAE 1042 Query: 348 FLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 Y + + + + G+ L + + ++ D Sbjct: 1043 ASRALGYSTEELLDLTIYDIDPDADSEGMENL-QREIDAGSLSVFERRHKTKDGRIFPVE 1101 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 ++ + + + + + + E + + ++ L ++ Sbjct: 1102 INAQVFEYEGRPTSIALVRDITERKRVEDEVRALNADLELRVLERTEA-LRLQTRYLRTL 1160 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 ++ + ++E L N+ ++ V++++ K + +E++ Sbjct: 1161 IDTLPMLAWLKDKESRFLVVNQTMALACTLSVDEMVGKSDLDCWPREYAESYRAVDSEVM 1220 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575 + R+T+E + + S DIS+ + + A Sbjct: 1221 ATGRRKTVEGPFFDAHDGVIWVETFKAPVLDVDGSVLGTVGIALDISDRRALEMAREAAL 1280 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE+ + +S+F+AR+SHE+RTPL I+G+++++ + G N R N I +SG Sbjct: 1281 AEAERLARLRSEFMARMSHELRTPLNGILGYAQILLGESRG---NERQSAMLNVIQQSGE 1337 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L+++ND+LD +KIE+GK L + L + S++ + A +K ++ A ++P Sbjct: 1338 YLLNLINDILDFAKIEAGKQELSLSDIQLPSFLRNLASIITIKAEQKALVFVCDIAADVP 1397 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 I AD ++Q+ LN+LSNAI ++ G QI + T + V+D+G+G+ +L+ Sbjct: 1398 AGIRADETRLRQVLLNLLSNAIKYSERG-QISLKVTVLEPGRLRFEVQDSGLGIDTGQLD 1456 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + F Q Q R GTGLGLP+++ +V ++ S +G+ Sbjct: 1457 TIFQAFEQA-GDWQHRTGGTGLGLPISRELVRMMDSDIHVTSRVDEGSTFWFDL 1509 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 62/604 (10%), Positives = 161/604 (26%), Gaps = 51/604 (8%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 NT L ++N + I G + + + A ++G + DV Sbjct: 495 NTQVLQAKNKLQATLDTIP-DLLFEIGLDGRYYDYHSPCTELLLVPAEDLLGKTVSDVMP 553 Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 Q GK P+ + + + +A P + + Sbjct: 554 AEAAKIVMSALREAHDQGISTGKQFQLPLPHGDFWFELSVAIKPTLDKEE----AHLIVL 609 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 A + +++F L E ++ P + + +L Sbjct: 610 SRNITERKHMEAQVLQREQEFRVLVENSPDLIFRYDKECRRIYTN-PAVARLVGRRADAL 668 Query: 244 TEYYAHKDDVLKTEKY-------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + +L + + + + + + + + N Sbjct: 669 LNMSPSEAKILSAGEADKLMQMIRQVQATGRPAESEVECLGADGQLHYFHNRYAPEFNAH 728 Query: 297 KESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351 E +S + E E + P Y G + Y NP Sbjct: 729 GEVVGVISIARDVTERKQAAEALAASEREFRTLAESLPDNIVRYDLEGRVIYVNPVLEKT 788 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + + D + +L + N Sbjct: 789 LGTIVSKMLGTT--VRERFPNGEYDDYAQLLDAVLT--SGEIGEIEKIVTPPYSNLHLVH 844 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + ++ E + I + + ++ ++ + + ++++ + + + Sbjct: 845 --SIRMIAECDENGEVIGVLAIGRDITERKLAEQALRESEEKYRTLIQKIQAAVVVHGAD 902 Query: 472 GIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHY--LTEILSLDLRQTL 525 IL+ N ++ G + + K P F +N + + ++L+ Sbjct: 903 TQILTFNLVAQEILGLSEDQLYGKTAIDPVWHFFHENGCAASPDEYPVNKVLASGKALKN 962 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN-------KLSHA 574 + + ++ + + + + +T DI++ KQ + L+ Sbjct: 963 YVLGVHRPGRQQDVWVLVNADPVFGKDGKITQVIITFIDITQRKQAEQRLWLVDFALNQV 1022 Query: 575 KKIAEKESSHKSDFL---ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 ++ + FL A S A+ +E + + + E + Sbjct: 1023 REAVYIINLQDHRFLNVNAEAS-------RALGYSTEELLDLTIYDIDPDADSEGMENLQ 1075 Query: 632 RSGN 635 R + Sbjct: 1076 REID 1079 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 52/524 (9%), Positives = 140/524 (26%), Gaps = 32/524 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNH-IGDLLKRQN 141 + D + + + +G A ++ M + + D I + Sbjct: 640 LIFRYDKECRRIYTNPAVARLVGRRADALLNMSPSEAKILSAGEADKLMQMIRQVQATGR 699 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + +G P ++ + E G I + Sbjct: 700 PAESEVECLGADG--QLHYFHNRYAPEFNAHGEVVGV--ISIARDVTERKQAAEALAASE 755 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++F L E + + + L + + + Y Sbjct: 756 REFRTLAESLPDNIVRYDLEGRVIYVNPVLEKTLGTIVSKMLGTTVRERFPNGEYDDYAQ 815 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-----NNSKESFEYLSHRNHPSLSAYFD 316 L + E + I Y+ +++ + + E L+ + + Sbjct: 816 LLDAVLTSGEIGEIEKIVTPPYSNLHLVHSIRMIAECDENGEVIGVLAIGRDITERKLAE 875 Query: 317 EGENLTPE----TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE--IAGGLSTL 369 + + E + K V+ + N + + Sbjct: 876 QALRESEEKYRTLIQKIQAAVVVHGADTQILTFNLVAQEILGLSEDQLYGKTAIDPVWHF 935 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENM 428 + + PV + A + + + + + + Sbjct: 936 FHENGCAASPDEYPVNKVLASGK--ALKNYVLGVHRPGRQQDVWVLVNADPVFGKDGKIT 993 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGY 487 + + ++++ + + L + + IIN ++ L+ N S+ GY Sbjct: 994 QVIITFIDITQRKQAEQRLWL----VDFALNQVREAVYIINLQDHRFLNVNAEASRALGY 1049 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E++L ++ + S L + E+ TK+ ++ + I + Sbjct: 1050 STEELLDLTIYD-IDPDADSEGMENLQREIDAGSLSVFER--RHKTKDGRIFPVEINAQV 1106 Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + DI+E K+ ++++ E +++ L Sbjct: 1107 FEYEGRPTSIALVRDITERKRVEDEVRALNADLELRVLERTEAL 1150 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 61/454 (13%), Positives = 121/454 (26%), Gaps = 27/454 (5%) Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---GKRLDKKFSHLHEIK 211 ++ L I +G F +V + R AL + K + Sbjct: 459 EQRWLWTVLGGSVIM-----LTGAAFF-LVRLRRSHRRLEALNTQVLQAKNKLQATLDTI 512 Query: 212 KGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + SP L + T + K L + + + Sbjct: 513 PDLLFEIGLDGRYYDYHSPCTELLLVPAEDLLGKTVSDVMPAEAAKIVMSALREAHDQGI 572 Query: 270 PE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 H + + + + + + A + E Sbjct: 573 STGKQFQLPLPHGDFWFELSVAIKPTLDKEEAHLIVLSRNITERKHMEAQVLQREQEFRV 632 Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V+ P F Y Y NP+ L + D + + + +D Sbjct: 633 LVENSPDLIFRYDKECRRIYTNPAVARLVG-RRADALLNMSPSEAKILSAGEADKLMQ-- 689 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 M+ + T A + + + + + N E + I + + + Sbjct: 690 -MIRQVQATGRPAESEVECLGADG-QLHYFHNRYAPEFNAHGEVVGVISIARDVTERKQA 747 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + ++ E+ D I + EG ++ N + K G V +L Sbjct: 748 AEALAASEREFRTLAESLPDNIVRYDLEGRVIYVNPVLEKTLGTIVSKMLGTTVRERFPN 807 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSS--CYSLTMHD 560 L +L+ +EKI L+ +R+I + D Sbjct: 808 GEYDDYAQLLDAVLTSGEIGEIEKIVTPPYSNLHLVHSIRMIAECDENGEVIGVLAIGRD 867 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 I+E K + L + + + K A V H Sbjct: 868 ITERKLAEQALRES-EEKYRTLIQKIQ-AAVVVH 899 >gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 968 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 119/643 (18%), Positives = 215/643 (33%), Gaps = 51/643 (7%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYY 247 +A R +K+F L K + + + S + ++ + Sbjct: 200 EALQAELSRSEKRFRSLFHGNKALFLLIEPLSGKITDASAGAVDFYGYSLEELKGMNISQ 259 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSH 305 + + L + T + ++ Sbjct: 260 INMLSPEEIASMRALAMSGYKQQFIFPHKLKTGDVKTVEVISTPVESGGKELLFSIVQDV 319 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364 +E V+ ++ G L N + T Y + + +A Sbjct: 320 TARQKALEDLEESRERLRAVVENAAAAIYLADESGRLVEVNAAAEQQTGYMREELLAMAI 379 Query: 365 GL---------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 S D T R ++ + Sbjct: 380 PDVDANSSKNDPAFFQEVMQSATGMTFESRHRHKDGTIFPVEVRAAKLELH--------- 430 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-I 474 GI + + +RK+ L ++L+ + +++ + Sbjct: 431 ----------SVPHVLGIVSDLTSRKDTERKLAEANRTLAAVLDGIPALVNVVDVSTREV 480 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 L NRA+ + G + + N + + + + + Sbjct: 481 LFMNRALKEALGRDG---VGGVCHAIFRDKSCVCENCPIERMSANTEGEANASVWEDRNP 537 Query: 535 -EEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + I + + DI + KQ + L +K+ AE + KS FLA + Sbjct: 538 ISGRWQLNHDRILPWFDGKTVRVQISLDIGQRKQAEEALKQSKEEAESANKAKSVFLANM 597 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL I+G +++K N EY RS N + +++D+LDIS+IE+ Sbjct: 598 SHEIRTPLNGILGMLQLLKTTD----PNDEQKEYLLGAIRSTNRLTRLLSDILDISRIEA 653 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711 GKM + + L + A K +L+ + N +P +L D ++QI N+ Sbjct: 654 GKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWDNILPMLLVGDEARLRQILFNL 713 Query: 712 LSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + NAI FT G +I I + V++ V DTG+G++ +L+ +PF Q S Sbjct: 714 VGNAIKFTEKG-KIRIDASLLPRSSDSSVRVLVTVSDTGIGISEEQLKDIFEPFVQAEGS 772 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R +G GLGL + + +V G I STP +GT + P Sbjct: 773 YTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFYLSLP 815 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 31/371 (8%), Positives = 83/371 (22%), Gaps = 24/371 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + + S G ++ GM + ++ + + + + + + Sbjct: 232 GKITDASAGAVDFYGYSLEELKGMNISQINMLSPEEIASMRALAMSG---YKQQFIFPHK 288 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 T +++ + P+ S +E F IV + ++ + E Sbjct: 289 LKTGDVKTVEVISTPVESGGKELL----FSIVQDVTARQKALEDLEESRERLRAVVENAA 344 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS---EESSL 269 + E + + + L D + + Sbjct: 345 AAIYLADESGRLVEVNAAAEQQTGYMREELLAMAIPDVDANSSKNDPAFFQEVMQSATGM 404 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + + L+ +S + E +D Sbjct: 405 TFESRHRHKDGTIFPVEVRAAKLELHSVPHVLGIVSDLTSRKDTERKLAEANRTLAAVLD 464 Query: 328 KCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 P V + + N + + G + N M Sbjct: 465 GIPALVNVVDVSTREVLFMNRALKEALGRD-----GVGGVCHAIFRDKSCVCENCPIERM 519 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 ++ A + S F + I + + + Sbjct: 520 SANTEG-----EANASVWEDRNPISGRWQLNHDRILPWFDGKTVRVQISLDIGQRKQAEE 574 Query: 446 KMEIEVMQLCS 456 ++ + S Sbjct: 575 ALKQSKEEAES 585 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 8/249 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G L E++ + G +++ M + DV + ++++ Sbjct: 347 IYLADESGRLVEVNAAAEQQTGYMREELLAMAIPDVDANSSKNDPAFFQEVMQSATGMTF 406 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ +GT V + A L ++S GIV D ++ + Sbjct: 407 ESRHRHKDGTIFPVEVRAAKLELHSVPHVL------GIVSDLTSRKDTERKLAEANRTLA 460 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + +V + + + +D E P+ Sbjct: 461 AVLDGIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHAIFRDKSCVCENCPIERMS 520 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGENLTP 323 ++ E + N + + + + +E + Sbjct: 521 ANTEGEANASVWEDRNPISGRWQLNHDRILPWFDGKTVRVQISLDIGQRKQAEEALKQSK 580 Query: 324 ETVDKCPIP 332 E + Sbjct: 581 EEAESANKA 589 >gi|194334238|ref|YP_002016098.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194312056|gb|ACF46451.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 737 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 105/543 (19%), Positives = 212/543 (39%), Gaps = 29/543 (5%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFF 334 + + + ++NN +L+ + E E D P P F Sbjct: 214 DGELFWENIIISPVRNNVHSISHFLAIKEDVTEKIRDKEALATSERRFRELSDLLPQPVF 273 Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + Y N + + YK D L + + + + Sbjct: 274 ETDGSNTVTYFNRAGYTVFGYKGKDLDRGLNVF-QLFSPQERGTIEEN----IRKRIKGE 328 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +A ++ + + + + + + GI + + +RK++ Sbjct: 329 KSADYEYRALKKDGSSFPVLVYCAPIMTQAGFQGIR--GIVLDITHRKQYERKIKENEAN 386 Query: 454 LCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++ + D I + + + G I+ NR FGY +++ + ++ Sbjct: 387 YRNLFQVIPDPIIVADFKSGNIVHWNRKALSFFGYSKKELAALSVEMLFS----RTVDDK 442 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570 T TK+ + + + FS + DI+E K+ + Sbjct: 443 REMTGFAGTMSTASVEAQIRTKDGFTIEVLVSSVLFDFSKHKRLLVVFRDITEQKKSE-- 500 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 ++ ++ K+DF+A VSHE+R+PL +I+GFS + +R L E+ I Sbjct: 501 -----RLIKENIRLKNDFIANVSHELRSPLFSILGFSSTLLKER-KELDFETTGEFLGII 554 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + ++ D+L++S+I+SGK+ + + V A +++ A+EK + Sbjct: 555 HDESKRLSSLIEDVLNVSRIDSGKVAYKKKIIDPAPVVIGACESLKMMASEKSVEFSIHV 614 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++ AD ++KQ+ +N+ NAI FTP G + +S + ++L V+D+GVG+ Sbjct: 615 EPETMQVNADPDALKQVVINLAVNAIKFTPRDGCVRVSLS-NDAHWMVLTVKDSGVGIPE 673 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +K + F ++ EGTGLGLP+ K ++ A+ G + S G+ + PL Sbjct: 674 SDYDKIFEKFYRVERPG-EEIEGTGLGLPIVKEIIAAHKGSIEVNSKKDFGSTFFVRLPL 732 Query: 811 YDT 813 + Sbjct: 733 STS 735 Score = 113 bits (284), Expect = 9e-23, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 75/270 (27%), Gaps = 14/270 (5%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + L E +D+ P+ + +G + Y NP F +T Y S D + + Sbjct: 124 SEFSLKQQVRLLNEAMDQSPVSIVITDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSI--- 180 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + S I N Sbjct: 181 -LKSGEHSQDFYRILWETISGGKVWQGEICNK---KKDGELFWENIIISPVRNNVHSISH 236 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I+ + + +K + + + + + + + NRA +FGY Sbjct: 237 FLAIKEDVTEKIRDKEALATSERRFRELSDLLPQPVFETDGSNTVTYFNRAGYTVFGYKG 296 Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +D+ + + + + + + K+ + + + Sbjct: 297 KDLDRGLNVFQLFSPQERGTIEENIRKRIKGEKSA--DYEYRALKKDGSSFPVLVYCAPI 354 Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAK 575 + + + DI+ KQ + K+ + Sbjct: 355 MTQAGFQGIRGIVLDITHRKQYERKIKENE 384 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 39/375 (10%), Positives = 95/375 (25%), Gaps = 26/375 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147 D +G ++ ++ + G + ++ ++ + H D + + + W G+ Sbjct: 149 TDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSILKSGEHSQDFYRILWETISGGKVWQGEI 208 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + I ++ P+ + S F I + +++F L Sbjct: 209 CNKKKDGELFWENIIIS--PVRNNVHSISHF--LAIKEDVTEKIRDKEALATSERRFREL 264 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKT--EKYPLL 262 ++ + + K+ L + T E Sbjct: 265 SDLLPQPVFETDGSNTVTYFNRAGYTVFGYKGKDLDRGLNVFQLFSPQERGTIEENIRKR 324 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGE 319 E S + + + + Y + + L + E E Sbjct: 325 IKGEKSADYEYRALKKDGSSFPVLVYCAPIMTQAGFQGIRGIVLDITHRKQYERKIKENE 384 Query: 320 NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 P P V GN+ + N L Y + A + L Sbjct: 385 ANYRNLFQVIPDPIIVADFKSGNIVHWNRKALSFFGYSKKEL--AALSVEMLFSRTVDDK 442 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 T AS + + ++ + + Sbjct: 443 REMTGFA------GTMSTASVEAQIRTKDGFTIEVLVSSVLFDFSKH---KRLLVVFRDI 493 Query: 438 VDTRINKRKMEIEVM 452 + + ++R ++ + Sbjct: 494 TEQKKSERLIKENIR 508 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 6/140 (4%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ++ +V L ++ + I I + G+I N ++ GY ED+L + ++ Sbjct: 128 LKQQVRLLNEAMDQSPVSIVITDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSILKSGEHS 187 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDIS 562 L E +S + K+ +L III + + S + D++ Sbjct: 188 QDFYRILWETISGGK--VWQGEICNKKKDGELFWENIIISPVRNNVHSISHFLAIKEDVT 245 Query: 563 EWKQEKNKLSHAKKIAEKES 582 E ++K L+ +++ + S Sbjct: 246 EKIRDKEALATSERRFRELS 265 Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 10/155 (6%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDI 124 SE F + D + + G K + S Sbjct: 255 ATSERRFRELSDLLPQP-VFETDGSNTVTYFNRAGYTVFGYK-GKDLDRGLNVFQLFSPQ 312 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 +I +K + + + +G++ P+ + PI ++ F G RG IV Sbjct: 313 ERGTIEENIRKRIKGEKSADYEYRALKKDGSSF--PVLVYCAPIMTQAG-FQGIRG--IV 367 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 K + + +L ++ V Sbjct: 368 LDITHRKQYERKIKENEANYRNLFQVIPDPIIVAD 402 >gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 989 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 110/645 (17%), Positives = 235/645 (36%), Gaps = 31/645 (4%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G R A+ ++ + V + R +V Sbjct: 128 GAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLGEVF 187 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 SL + H + L T + LP + + + + + Sbjct: 188 SLHDENTHAP-IEDPMAAVLQTGSDGGLPARAILRARGGSDLPVECTGTPMTDERGVRQG 246 Query: 302 YLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFV-------YSHGNLFYANPSF 348 + + E E + + + + G Y+N Sbjct: 247 IVIVFRDVTQKRRAQEAEILRETNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSN--I 304 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + ++L + L D RL + Sbjct: 305 YEWLGFDTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDG-LFELENRL---RHRDG 360 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + + + G + + ++ ++ + + E + G+A Sbjct: 361 TDRWVLVRGTARRDAMGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHC 420 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + +G L N ++ G+P + + + + + +L+ + + Sbjct: 421 DLDGRFLRVNHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERF-RLLTEGKLKHYSEE 479 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + + + + +S + + DISE K + + AK AE S Sbjct: 480 VPLVRFDGERVWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVRVAKDAAEAASRA 539 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA +SHE+RTPL I+G++++++ + R + I++SG +L ++ND+ Sbjct: 540 KDQFLANISHELRTPLNGILGYAQILQRDVR---LDTRQLASVGVIEQSGQHLLTLINDI 596 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD +++ +GK+ L V L + +V + A +KR+++ A ++P + D R Sbjct: 597 LDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERR 656 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ LN+L+NA+ FT G ++ +S + + + VRDTG+G++ LE +PF Q Sbjct: 657 LRQVLLNLLANAVQFTDRG-EVTLSVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQA 715 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 R G GLGL +++ +V G+ + S+ +G++ Sbjct: 716 -GDHTRRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFEL 759 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 74/273 (27%), Gaps = 22/273 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDR 391 + + A +++ V G L L + + +M R + Sbjct: 6 ILIVEDDRIV-ARDIAQQMSRAGYVVVGSTGSGEEALALVETLPAGSKPDLVLMDVRLEG 64 Query: 392 TCIAASARLHTIQWNRENSLAMTFIP---FEKANQFPENMPQNGIEPEDVDTRI------ 442 + + +T + E +D+ R Sbjct: 65 ELDGIDTARCIREARDIPVVFLTAYADEETIRRATAAEPYGYVLKPFDDMQLRTVVEMAL 124 Query: 443 ----NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 +R++ + L + DG+ + +G + N A L G+ + + Sbjct: 125 YKHGAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLG 184 Query: 499 VFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554 ++NT + + + +L L + + L + + Sbjct: 185 EVFSLHDENTHAPIEDPMAAVLQTGSDGGLPARAILRARGGSDLPVECTGTPMTDERGVR 244 Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + D+++ ++ + + A E + Sbjct: 245 QGIVIVFRDVTQKRRAQEAEILRETNARLEMAM 277 Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 37/390 (9%), Positives = 104/390 (26%), Gaps = 32/390 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQ- 140 + D G++ ++ G + G RL +V + + + + +L+ Sbjct: 151 VLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLGEVFSLHDENTHAPIEDPMAAVLQTGS 210 Query: 141 -NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGK 198 + L G++ +P++ P+ G F V R + L + Sbjct: 211 DGGLPARAILRARGGSD--LPVECTGTPMTDERGVRQGIVIVFRDVTQKRRAQEAEILRE 268 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYY 247 + ++ G ++ + D + P R+ + + Sbjct: 269 TNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSNIYEWLGFDTPQARLDYEAYMSVLHP 328 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 H+D L S + + + ++ + ++ Sbjct: 329 DHRDST-DRAVASFLESGDGLFELENRLRHRDGTDRWVLVRGTARRDAMGKPVRFVGSLV 387 Query: 308 HPSL----SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 + E T + + G N + + D ++ Sbjct: 388 DITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRFLRVNHRSGEIVGWPR-DALQH 446 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L D + A ++ S + ++++ E + +T + + Sbjct: 447 R----RLHDLIHADFSVASIERFRLLTEGKLKHYSEEVPLVRFDGER-VWVTLSVALQHD 501 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + I + + + + + + Sbjct: 502 ASGQTAHVIVIIQDISERKALEETVRVAKD 531 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 33/373 (8%), Positives = 87/373 (23%), Gaps = 18/373 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147 D G ++ + +G + RL D+ + LL + + Sbjct: 421 DLDGRFLRVNHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERFRLLTEGKLKHYSEEV 480 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L +G V + L+ + + + + I+ + Sbjct: 481 PLVRFDGE--RVWVTLSVALQHDASGQTAHV--IVIIQDISERKALEETVRVAKDAAEAA 536 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263 K + + + ++ + L V++ LLT Sbjct: 537 SRAKDQFLANISHELRT-PLNGILGYAQILQRDVRLDTRQLASVGVIEQSGQHLLTLIND 595 Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGEN 320 + + + + + + L++ P L A E Sbjct: 596 ILDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDER 655 Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + ++ G + + + + G+S Sbjct: 656 RLRQVLLNLLANAVQFTDRGEVTLSVSRGAA--GRLRFEVRDTGIGVSADRLEAIFQPFE 713 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 RS + + ++ + F + P + P + Sbjct: 714 QAGDHT-RRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFELDAPASAAWPCERI 772 Query: 440 TRINKRKMEIEVM 452 R+ +++ Sbjct: 773 PRLQADRLDGARR 785 >gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1115 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 159/807 (19%), Positives = 292/807 (36%), Gaps = 57/807 (7%) Query: 32 NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 N K+ E P + TD ++ +N D F V + ++A Sbjct: 74 NAMRARKALGEFPPDVQPTTLSKTDAVKKWTANPVLEDINKYFELTQRSLGVDLVFLVNA 133 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G S G IG D + TW+ Sbjct: 134 AGDCISASNW-----GQPGVS-IGTNFSD-------------RQWFQDAKTWFRGMQY-- 172 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFR---------GFGIVHVNRVDNDPR-ALGKRLD 201 G +VP + PI + +F G GF + D + D Sbjct: 173 AVGKTTHVPGLYFSTPIV-LDGKFQGAVVAKIDLPTLGFLTQRADAYIVDSNGVIIMAHD 231 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDVLK 255 + L + + ++ Q++ L++++ S E + H Sbjct: 232 PEMVMLTIPDATVNKLSRQDKQQLYQRTEFASLKIESWKGSDRLKRINGENFPHVLAATS 291 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 +Y + ES LP N + G Y + Sbjct: 292 LPEYGMTVYAESDLPGIAVLERDRRNMFFLISLLGCTLILIGGGLIYYFRSVRDAKHT-V 350 Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 +E E+ ++ + S G + N + + Y+ + + L +L+ Sbjct: 351 EESESRLRLLLESVNGGIWGQSLNGGICTFINAAGAKMLGYQPDELLGQ--SLHSLVHHT 408 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + + + + W R+ + + + Sbjct: 409 YPDGAHYEAEICPMHATSLDGIPRKINNEVLWRRDGTSIAVEYSTHPMYRDGRIEGTVVV 468 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + +R+M+ + ++ + DG ++ EG +L N A + GY +++L Sbjct: 469 FEDITERQRMERQMQERDAVYSAAIKTSVDGFWTVDLEGYLLEVNDAYVQASGYTRDELL 528 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSS 552 + ++ + + + +I E + TK ++ + + + P Sbjct: 529 SMRVSQLEVIDSEADVETRIEKIRREGSD---EFESRHRTKAGRIWDVSVAVSYAPIAGG 585 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI+E KQ+ L A++ AE + KSDFLA +SHEIRTP+ A+IGFSE+ + Sbjct: 586 RLFCFVKDITERKQQAKLLEAAREKAESANRAKSDFLANMSHEIRTPMNAVIGFSELALD 645 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + I S +L I+ND+LD SKIES +M L E ++LDE + + Sbjct: 646 DPNPV----SQRAHLQQIIESSRSLLGILNDILDFSKIESRQMTLEMEVLNLDELLGQVR 701 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT 730 + + A E+ + + + +P IL D ++QI N+L NAI FT G + + Sbjct: 702 RMFVMQAKERTLDLVVAREAGVPNILTGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAI 761 Query: 731 HTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T++E V V+D+G+GM+ +L +PF Q NS R GTGLGL +++ + Sbjct: 762 QTNSENVTLDFCVKDSGIGMSAAQLASLFQPFVQADNSITRRFGGTGLGLTISRNLARLM 821 Query: 789 MGKFYIFSTPAKGTLIE--IIFPLYDT 813 G + S G+ + P+ + Sbjct: 822 DGDIRVDSVAGTGSEFHFEVTLPIANA 848 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 54/400 (13%), Positives = 115/400 (28%), Gaps = 39/400 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W +D GYL E+++ + G +++ MR+ + I + ++R+ + + Sbjct: 501 WTVDLEGYLLEVNDAYVQASGYTRDELLSMRVSQLEVIDSEADVETRIEKIRREGSDEFE 560 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G V + ++ PI +G R F V L + +K Sbjct: 561 SRHRTKAGRIWDVSVAVSYAPI-------AGGRLFCFVKDITERKQQAKLLEAAREKAES 613 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + K + + P + + +L + + S Sbjct: 614 ANRAKSDFLANMSHEIRT------PMNAVIGFSELALDDPNPVSQRAHLQQIIESSRSLL 667 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L + DF I Q T + L + + E P + Sbjct: 668 GILNDILDFSKIESRQMTLEMEVLNLDELLGQVRRMFVMQAKERTLDLVVAREAGVPNIL 727 Query: 327 DKCPIP---FFVYSHGN-LFYANPSFLLL---------------TKYKSVDDIEIAGGLS 367 P+ GN + + N + L K A L+ Sbjct: 728 TGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAIQTNSENVTLDFCVKDSGIGMSAAQLA 787 Query: 368 TLLDAPKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 +L +DN+ + + + R+ + R+ ++ +P Sbjct: 788 SLFQPFVQADNSITRRFGGTGLGLTISRNLARLMDGDIRVDSVAGTGSEFHFEVTLPIAN 847 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 A Q ++ + KR + +E ++ +L Sbjct: 848 AMQLASHVKDVPPVQDMTQALYGKRALLVEDNKVNQLLAT 887 >gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 957 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 125/821 (15%), Positives = 260/821 (31%), Gaps = 94/821 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQN-T 142 + G + + + G + + + +V H D LL Q+ Sbjct: 7 IFTSSPEGRYLSANPAMARIFGYASPQALVAASAEVGTGSHADSAEGGAFLRLLDVQDEI 66 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +T +G+ V + +A + + + F GF V A+ Sbjct: 67 FDRETRHLRRDGS--EVWVSTSARAVRDSSGKTLHFLGF--VTEITPRKQVEAVLAHERN 122 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE----------------- 245 + L + + N + Sbjct: 123 LYRDLVASQPAGVYRLRVLAQKPWGPEEWVEKLESNYTLEMVSDRFCEILGATREECQAN 182 Query: 246 -----YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSK 297 H +D +L E S E + Sbjct: 183 ASIVIERMHSEDRADFVARNVLAVESLSRFTWEGRIESADGDRWVHFESVPRSLDNGDVL 242 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + L D+ + + S + A+ + T + Sbjct: 243 WTGILLDISGFKQAERASDQRARELAALHELSMVVSSSLSLDQIVAASVRVVRETTGSDM 302 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL--------------HTI 403 + + G LL A D+ + + C+ A L Sbjct: 303 VYLFLRQGERLLLQAVCPQDSEMLLHEVHEHRVGECLCGLAVLDGEPQYSNDILSDDRCT 362 Query: 404 QWNRENSLAMTFIPFEKANQF----------------------------------PENMP 429 + + + ++F + Sbjct: 363 RQECKEAGILSFAALPLRDGRDVIGVMGLASRTPRDFHPQSEFLETQAHQVSIALVNARL 422 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGY 487 E + ++ + + ++L+ G+A+ ++ + N + +G Sbjct: 423 YEKANQELDNRIQAEKTLREREEFIRTVLDNLPVGVAVNTVSPDVRFEYMNELFPRFYGT 482 Query: 488 PVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 E I + E + +T + ++ + + ++++ + Sbjct: 483 TRESITAPEGFWEAAYPEPEFRGKIRGMVTAGCASGSQERMCWADVPIMRQDETRFVTAR 542 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 LP ++ T+ D++E KQ + ++ AK AE S K++FLA +SHE+RTPL ++ Sbjct: 543 NIPLPGTNLMISTVWDVTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVM 602 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 ++++ N EY + +S + +++DLLDIS+IE+GK+ + E ++ Sbjct: 603 AMMQLLEMTPL----NGEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAV 658 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 E + L A K + + S ++P + D ++Q+ N++ NA+ FT G Sbjct: 659 QELLQSVSELFNTSAQSKGVSLELSTDPSVPPRLKGDAARLRQVLFNLVGNALKFTDQGF 718 Query: 724 QIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + T ++ V DTG+G+ + + PF Q+ + R +G GLGL Sbjct: 719 VRVELTALPPRGLEQCRILFSVMDTGIGIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLA 778 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + + +V+ G + S +GT + + PL T D + Sbjct: 779 IVRRLVELMGGHITLDSIFGEGTEVHVALPLGLTESEADAL 819 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 GI + EG LS N A++++FGY L + L Sbjct: 3 APIGIFTSSPEGRYLSANPAMARIFGYASPQALVAASAEVGTGSHADSAEGGAFLRLLDV 62 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 + ++ T ++ + + + + SS + + +I+ KQ + L+H + Sbjct: 63 QDEIFDRETRHLRRDGSEVWVSTSARAVRDSSGKTLHFLGFVTEITPRKQVEAVLAHER 121 >gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 587 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 27/396 (6%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + R E++ +L +++E G+ +I++ G I Sbjct: 206 ARTYESREDETGMLSQSLNILARNLQEMVRTQEMQQDRLRALIENIGSGLILIDQRGYIS 265 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 NRA ++F D + + + + + EI ++ +++ L E Sbjct: 266 LMNRAYKEMFRIDPSDYVHRLYYEAFPY---KEVIALVEEIFMTEVN-VRKQMLLPVDIE 321 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 K + + HDI+E K+ + + DF+A VS Sbjct: 322 RKHFEVYGTPIIGTNDEWKGIIVVFHDITELKKLE--------------QMRKDFVANVS 367 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIES 652 HE++TP+T+I GF+E + + G + + + +EY I + + ++ DLLD+SKIE Sbjct: 368 HELKTPITSIKGFAETLLD---GAMHDAQTLEYFLTIILKESERLQHLIQDLLDLSKIEQ 424 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 L+ V L E + E I +++ AN+K+I + + + + DL +KQI +N++ Sbjct: 425 QGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCYMYGDLHRLKQIFINLI 484 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 +NAI +TP+GG++ + +E+ + V DTG+G+ E+ + + F ++ ++ Sbjct: 485 NNAIAYTPAGGRVTVYVE-KDEKELHVHVSDTGIGIEQKEIPRIFERFYRVDKARSRNSG 543 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V+A+ G + S GT + F Sbjct: 544 GTGLGLAIVKHLVEAHHGTISVKSEVGIGTTFTVHF 579 >gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453] Length = 639 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 114/499 (22%), Positives = 224/499 (44%), Gaps = 30/499 (6%) Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + L PI V G+ NP+ + Y + + S+ Sbjct: 10 QALFEHVYKSAPIGIALVTVEGHWISVNPAACKMFGYTEEELMAQPAS------DYVYSN 63 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 K +L+ D T + + A + + ++ + + Sbjct: 64 CINNKEKLLHSLDDTSSTIAVEKQFSHKDGNQIWASMHVSLVRDDKENTPLFFISQIVDI 123 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D+++ +++++ + + S+ + D I N EG I++ N+ +L G+ + +++ Sbjct: 124 TDSKVAEQRLQESIERYTSLKKYNHDAIISFNLEGKIINGNQMAEQLTGFKIPELIGTKI 183 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCY 554 + + + S + + ++++ ++ + + + + + + Sbjct: 184 SRLIGERNLSRILSSAADYVAVEKGINGIH-----HRDGHTVEVLATLAPIVIHNQNVGF 238 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + D++E K+ L K+ AEK + KS+FLA +SHEIRTP+ +IG +++I Sbjct: 239 YIIAKDMTEQKR----LIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE 294 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + +Y I +SG +L+I+ND+LD SKIESG+ L E SL A+SE +++ Sbjct: 295 L----DEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNM 350 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A EK I + TS A+ +P ++ D+ ++Q+ +N+LSNAI FTP+G + IS + Sbjct: 351 ILPKALEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCLN 409 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +E + V DTG+G+ ++ +PF Q+ + + EGTGLGL + K +V Sbjct: 410 HEGNPPLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMG 469 Query: 790 GKFYIFSTP-AKGTLIEII 807 G + G++ Sbjct: 470 GDIWYERNLNGSGSVFAFT 488 Score = 44.2 bits (103), Expect = 0.092, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 35/112 (31%), Gaps = 3/112 (2%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150 G+ ++ K G +++ D I+ + L +T + Sbjct: 30 EGHWISVNPAACKMFGYTEEELMAQPASDYVYSNCINNKEKLLHSLDDTSSTIAVEKQFS 89 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G ++ + ++ + F IV + + L + +++ Sbjct: 90 HKDGNQIWASMHVSL--VRDDKENTPLFFISQIVDITDSKVAEQRLQESIER 139 >gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1119 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 114/510 (22%), Positives = 208/510 (40%), Gaps = 21/510 (4%) Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + + ++ + G + NP+ L Y + I + Sbjct: 221 DARTKALEAANIRLNTILESAVDGFVIINEFGIITDINPAVSRLFGYAHNELIGQNVSIF 280 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 D L D + + + I S L + + + Sbjct: 281 MPFDQRPLHDGYIQQYFTTHVA--KIIGTSRELTAQRKDGQ---LFPIALSVSQMSIDNR 335 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G+ + + + + L + L A+ D + I+ G ++ N A ++LFGY Sbjct: 336 AMFIGLVKDLSEAKRKEIAAAKTESVLLATLAASQDCLITIDMSGKVIEFNLAATRLFGY 395 Query: 488 PVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLS--LR 542 E+ + + + + L K L K L+ L Sbjct: 396 SREEAVGALLEDLIIPEDKQQGHKRGIERYRRTGEGKMLNKRVELLARCKAGNLIPIELE 455 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 ++ +L ++ + DISE K + KL AK+ AE+ S KS FLA +SHEIR+PL A Sbjct: 456 VVPIQLGDEVLFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNA 515 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G E++ + +AN +G+ +L +ND+LD SKIE+G+M L Sbjct: 516 ILGGVELLLDSSLSK----DQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEF 571 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 D+ V++ + +++ A EK + + + N+PR ++ D + ++Q+ N++ NAI FT S Sbjct: 572 EPDKLVAQVLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTAS 631 Query: 722 GGQIIISTTHTSNEEVIL----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G I + N + + RV D+G+G++ K K F Q+ ++ +GTGLG Sbjct: 632 G-TITVEMWIPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLG 690 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 L + ++ G + S +G+ Sbjct: 691 LAICSELITMMGGTIELQSELGQGSRFTFY 720 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 76/263 (28%), Gaps = 28/263 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G + E + + G + +G L D+ H + + + T GK Sbjct: 376 IDMSGKVIEFNLAATRLFGYSREEAVGALLEDLIIPEDKQQ-GHKRGIERYRRTGEGKML 434 Query: 149 LWPIEG-----TNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +E +PI+L +PI F+ F + ++ + Sbjct: 435 NKRVELLARCKAGNLIPIELEVVPIQLGDEVLFTAF-----LRDISERKANEQKLQQAKE 489 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + ++K + + P + V L + KD + Sbjct: 490 QAEQGSKVKSRFLATMSHEIRS-------PLNAILGGVELLLDSSLSKDQRIHANIAREA 542 Query: 263 TSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 S ++ + DF I Q L+++ E + ++ F++G L Sbjct: 543 GSALLHTINDILDFSKIEAGQMV-------LESHEFEPDKLVAQVLQILEPKAFEKGLEL 595 Query: 322 TPETVDKCPIPFFVYSHGNLFYA 344 P V L Sbjct: 596 VSFVNRNVPRTV-VGDQQRLRQV 617 Score = 41.2 bits (95), Expect = 0.69, Method: Composition-based stats. Identities = 44/403 (10%), Positives = 97/403 (24%), Gaps = 39/403 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNT----WYGK 146 G + +I+ + + G ++IG + + P + +I + Sbjct: 252 GIITDINPAVSRLFGYAHNELIGQNVS-IFMPFDQRPLHDGYIQQYFTTHVAKIIGTSRE 310 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G PI L+ + NR G+V + + Sbjct: 311 LTAQRKDG--QLFPIALSVSQMSIDNR----AMFIGLVKDLSEAKRKEIAAAKTESVLLA 364 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE----KY 259 + + + V +L E +D + + Sbjct: 365 TLAASQDCLITIDMSGKVIEFNLAATRLFGYSREEAVGALLEDLIIPEDKQQGHKRGIER 424 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 T E L ++ + + + + + S ++ Sbjct: 425 YRRTGEGKMLNKRVELLARCKAGNLIPIELEVVPIQLGDEVLFTAFLRDISERKANEQKL 484 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E ++ FL ++ + G LL LS + Sbjct: 485 QQAKEQAEQGSK------------VKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQ 532 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------G 432 I + + + + + + FE + + G Sbjct: 533 RIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEKG 592 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +E R R + + +L +L D G I Sbjct: 593 LELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTIT 635 >gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum JL354] Length = 1446 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 116/656 (17%), Positives = 236/656 (35%), Gaps = 31/656 (4%) Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP----- 232 + G + R + A + +++F L + Sbjct: 525 YIGRLVKQRTRELEETVAALEESERRFGDLAGLSPAGIFRTDAYGFCTYVNEAWLKQTGL 584 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 L + D +K E + + + + F + Sbjct: 585 GASHALGAGWLDAVHPDLRDDVKREWLDAVQAGTEWRCKLQ-FLKPDDVVSWVDLIAAPR 643 Query: 293 QNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPS 347 + E ++ + E E P F + Y NP+ Sbjct: 644 IGDDGEMQGFIGVAIDITEQKLATDALKESERRFQSLASFSPAGIFRTDSAGVCNYVNPA 703 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + + + + D V + + Sbjct: 704 WCQMAGLTEAEAMGTGWSRAVHYDDLDGLLQRWAAAV------DRGEPYRGEFRWLHLDG 757 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + G+ + D + ++++ QL + E +D + Sbjct: 758 -SIVWVDAVAQPEFDDDGNVRGYIGVVIDVTDRKRFEKEIAERDKQLAILAENATDAVFR 816 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G L + + + G P E ++ + M ++ S ++Q + Sbjct: 817 VELDGTCLYASPSAKDVLGVPSEHLIGTNALDGFHPDDQDRMWSLFDDLRSGRIKQIVAA 876 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 STK++ L + S+++ DI + K+ + L A++ AE + Sbjct: 877 YRWRSTKDDDYRWLEANAGLVKDQQSDEAKEVSVSIRDIGDRKKMELDLVAARQNAETAA 936 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + K+ FLA +SHEIRTP+ ++GF+E++ P E A I SG ++ I+N Sbjct: 937 AAKATFLANMSHEIRTPMNGVVGFTELLLAGELSP----EQRENAQLIADSGRAMMQILN 992 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD+SKI++G+M + EP+ L + + L++ A +K + ++P R++AD Sbjct: 993 DILDVSKIDAGQMTIVREPIDLRHKLQSCMRLLEPTARQKGLKFELLIDEDVPSRVMADP 1052 Query: 702 RSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 ++QI N++ NAI FT G ++ I E + + V D+G+G+ L+ + Sbjct: 1053 LRLRQILTNLVGNAIKFTAKGIVNCRVSIERGPEDQETLCIAVEDSGIGIPADRLDAIFR 1112 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F Q S GTGLGL ++ + G+ + S G++ + PL + Sbjct: 1113 EFSQADESTARIYGGTGLGLTISNELAKMMDGELLVSSELGHGSVFTLRLPLLRAN 1168 Score = 108 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 47/377 (12%), Positives = 93/377 (24%), Gaps = 18/377 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144 + DA+G+ ++E K G A +G D D D ++ W Sbjct: 562 IFRTDAYGFCTYVNEAWLKQTGLGASHALGAGWLDAVHPDLRDDVKREWLDAVQAGTEWR 621 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 K + ++ +DL A P + E GF G I K +++F Sbjct: 622 CKLQFLKPD--DVVSWVDLIAAPRIGDDGEMQGFIGVAI--DITEQKLATDALKESERRF 677 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 L + + + + D +++ Sbjct: 678 QSLASFSPAGIFRTDSAGVCNYVNPAWCQMAGLTEAEAMGTGWSRAVHYDDLDGLLQRWA 737 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFD 316 + + ++ + ++ Y+ + Sbjct: 738 AAVDRGEPYRGEFRWLHLDGSIVWVDAVAQPEFDDDGNVRGYIGVVIDVTDRKRFEKEIA 797 Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + + F V G YA+PS + S E G + L Sbjct: 798 ERDKQLAILAENATDAVFRVELDGTCLYASPSAKDVLGVPS----EHLIGTNALDGFHPD 853 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + RS R +A + + K Q E + Sbjct: 854 DQDRMWSLFDDLRSGRIKQIVAAYRWRSTKDDDYRWLEANAGLVKDQQSDEAKEVSVSIR 913 Query: 436 EDVDTRINKRKMEIEVM 452 + D + + + Sbjct: 914 DIGDRKKMELDLVAARQ 930 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 39/415 (9%), Positives = 102/415 (24%), Gaps = 19/415 (4%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + + G G G + R + L + +++ + E++ I + Sbjct: 280 LLDLPQTLPGISGIGFIEPVRAGEEQAFLDSLAARG---RDDLEIHPLTDRDERFVIVAI 336 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + +++ + + + +T + ++ + L + + Sbjct: 337 EPLVDNIQAIGLDIAFEDNRRAAASKARDTGKATITRRILLVQDETESPGFLLLRPLYRP 396 Query: 288 Y-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346 + +F+ + D + + D VY Sbjct: 397 GLPTDTVEERRSAFDGWIYAPFVGPRFMSDLTPSQ-GKLFD-----IAVYDGAR------ 444 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + S + G S V+ + R ++ Sbjct: 445 PDPEELIFSSSEAPAG-DGASAFTVQRTFKVMEQTWTVVWTSTPAFERGVVTREASLVLI 503 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 L + F + E ++ + +E + + + GI Sbjct: 504 GGLLLTLIFAVLLFSGSRREAYIGRLVKQRTRELEETVAALEESERRFGDLAGLSPAGIF 563 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + G N A K G L + + + + + + + Sbjct: 564 RTDAYGFCTYVNEAWLKQTGLGASHALGAGWLDAVHPDLRDDVKREWLDAVQAGTEWRCK 623 Query: 527 KITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 L + L I + DI+E K + L +++ + Sbjct: 624 LQFLKPDDVVSWVDLIAAPRIGDDGEMQGFIGVAIDITEQKLATDALKESERRFQ 678 >gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1102 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 105/529 (19%), Positives = 217/529 (41%), Gaps = 21/529 (3%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFL 349 T+ + E L + L+ + +D I + ++ + Sbjct: 159 TVFALIRFVPEALKLPSTALLAQELQRSKERLDFALDAGQIGVWEWNLKTDTLLWDRRTR 218 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + E+ T ++ L + +T +++ + + + Sbjct: 219 QIFNIDP----EVRDLYLTDFTQCLHPEDRNEVTNQLEQCIQTRTPYNSKFRVVHSDG-S 273 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + E G+ + D ++ + + + S E + GIA + Sbjct: 274 IRYVHAQGRAFLGNDGEPEQYIGVCHDFTDKQLQEDALAESELNFRSTFEQVAMGIAHVA 333 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G L N+ + ++F Y E++L + ++ + + + +++ Sbjct: 334 LDGRWLRVNQRLCEIFDYQAEELLELRIHDLSHPDELEIVLKNMQRMQAGEIKS-YSIEK 392 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 K+ + +++ + S + + +I K+ + KL AK AE+ S K Sbjct: 393 RYLRKDGSSIWTNLMVSLVRHQSGEPKHFIFGIKNIQRRKETEQKLKAAKLTAEEASQTK 452 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHE+RTPL +IG +E+++ N E+ + SG +L+++ND+L Sbjct: 453 SEFLANMSHELRTPLNGVIGMTELLQGTHL----NQHQQEFVDACRSSGESLLNLINDIL 508 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSV 704 D SKIE+GK++L L+ + + +S + NEK + + + D + Sbjct: 509 DFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTNEKNLELPCFVDPESRLTLKGDSYRL 568 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVIL--RVRDTGVGMTNYELEKAMKPF 760 +QI +N++ NAI FT SG ++++ T N + + V DTG+G++ ++ + + F Sbjct: 569 RQILVNLIGNAIKFTDSG-EVVVRTRTVSRENGNIRIHFSVTDTGIGISESKINRLFQSF 627 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ S GTGLGL +++ +V+ G+ I S G+ P Sbjct: 628 SQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIESQDGVGSTFWFEIP 676 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 25/267 (9%), Positives = 76/267 (28%), Gaps = 12/267 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTL 149 G +++ L + A +++ +R+ D+S ++ ++ ++ + Sbjct: 335 DGRWLRVNQRLCEIFDYQAEELLELRIHDLSHPDELEIVLKNMQRMQAGEIKSYSIEKRY 394 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G++++ + ++ + ++ E F FGI + + K + Sbjct: 395 LRKDGSSIWTNLMVSL--VRHQSGEPKHFI-FGI-KNIQRRKETEQKLKAAKLTAEEASQ 450 Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263 K + + + + + + L +L Sbjct: 451 TKSEFLANMSHELRTPLNGVIGMTELLQGTHLNQHQQEFVDACRSSGESLLNLINDILDF 510 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S+ + D H +L + ++++ E + S + L Sbjct: 511 SKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTNEKNLELPCFVDPESRLTLKGDSYRLRQ 570 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLL 350 V+ G + + Sbjct: 571 ILVNLIGNAIKFTDSGEVVVRTRTVSR 597 >gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 767 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 134/638 (21%), Positives = 242/638 (37%), Gaps = 36/638 (5%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 A+ L K+ + E+ S +P P + ++ T D Sbjct: 116 SPAVHDHLRKRRDAVSELADLVVIGADGIALHHSADAPLPTATLTDRAY-FTGPRDSADQ 174 Query: 253 VL--KTEKYPLLTSEESSLPEQEDFHTINLNQY--------TKKQYFGTLQNNSKESFEY 302 L + + + +P + + + Sbjct: 175 RLFVGATISSRVMTGQRVIPFSRRWTDDQGGFRGVMVAMIDPTRLAATLESQHIDRKGGV 234 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNL-FYANPSFLLLTKYKS 356 + ++ + ++ + P + A+ + T + + Sbjct: 235 ILALRDGTVLLERPQAQSGAEGGAEGGPQRNGLGGLSDWPAVRAALAAHDEATIRTAFPA 294 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 A G+ +L+ ++ D + L A L + N + + Sbjct: 295 QPASIGASGIDSLVSVRRVRDYPFVIVATL--------PVDAALREWRRNTAVWTGIGAV 346 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + I + ++ ++ ++ IL++ D + + G I++ Sbjct: 347 MTI-----AIALLTAFIVRQHARREQDQARLARASRRIRGILDSMLDAVVTFDSNGRIIT 401 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 NRA +FG P ++ +P + + LT + + + Sbjct: 402 FNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFTVGDLRLDG 461 Query: 537 K-----LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 L + + + D++ KQ++ +L +K AE + K++FLA Sbjct: 462 GPCTPAALPAALGGVRPDEPRICVGVIRDMTRRKQQEAELIASKTQAELANRAKTEFLAN 521 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL AIIGF+EV+ ++ FG + N R I SG +LDIVN +LD+SK+E Sbjct: 522 MSHELRTPLNAIIGFAEVLSSEFFGTV-NERQKSCITDIHDSGRHLLDIVNAVLDMSKLE 580 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 G+ +L E V EA+ + + +V+ A I I I + D R+ KQ+ LN+ Sbjct: 581 FGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDRRAFKQVILNL 640 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA+ FTP GGQI +S ++ L V DTG+G+ + +PF Q N+ R Sbjct: 641 LSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFRQAENTANRRY 700 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EGTGLGL ++K +D + G S GT + + P Sbjct: 701 EGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLP 738 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 33/338 (9%), Positives = 80/338 (23%), Gaps = 29/338 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN---TWYGK 146 D++G + + G +M+G + + ++ L+R Sbjct: 394 DSNGRIITFNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFT 453 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG------FGIVHVNRVDNDPRA----- 195 ++G P AALP G R G++ A Sbjct: 454 VGDLRLDGG----PCTPAALPA-----ALGGVRPDEPRICVGVIRDMTRRKQQEAELIAS 504 Query: 196 ---LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 K L + + S + + S Sbjct: 505 KTQAELANRAKTEFLANMSHELRTPLNAIIGFAEVLSSEFFGTVNERQKSCITDIHDSGR 564 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L +L + + + Q +++ + + + + +++ Sbjct: 565 HLLDIVNAVLDMSKLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIA 624 Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + ++ F G + + L + + G+ Sbjct: 625 LLWVDRRAFKQVILNLLSNAVKFTPDGGQITV--SAGLEADGGFRLTVADTGIGIPAAFM 682 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 A + R + T + S + I + Sbjct: 683 ADLFQPFRQAENTANRRYEGTGLGLSISKNFIDLHGGT 720 >gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1229 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 133/805 (16%), Positives = 266/805 (33%), Gaps = 53/805 (6%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 +++ H + D + + E + +D+ + ++ Sbjct: 289 RDDQGHPIRVIGSTIDISDRKATEATLKQRETDLRLITDAVPALIAY-VDSDCRYRFVNR 347 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160 G+ A +IG + D + + + + + +G + YV Sbjct: 348 AFTTWFGHSAENLIGQSVADFVGAEVYEYMSRDIEAALAGEPINVEMWMPFKDGGSRYVR 407 Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-----HS 215 +P GF F ++ A + +++FS L + Sbjct: 408 RQ--YIPDIDPQGHVKGFYAF--INDITDLKQIEAALRDREQRFSTLFNGMEDWVLVYPL 463 Query: 216 SVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + + + P + R + S+ + L+ LL + + Sbjct: 464 TADNQPGQLIEVNEPACKRLGYTRQELLTLSVADILDIPLADLQVSFQKLLQEKRVVVES 523 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 L + E + + PI Sbjct: 524 VHRTKAGQQIPVEVSSTLFMLDGLPTVQSICRDITERKQAELALRKSETVLNAFIASSPI 583 Query: 332 PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + H YAN + + + L ++ + ++ R Sbjct: 584 GIAFFDHDLRYLYANEALATMNGVPLSQHLGRT--LWEVVPQMAPEFAPMLDQILQTRQP 641 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-- 448 R S + F E + E + + + + Sbjct: 642 RLNFEFSGEVQP-----GIYCHALANHFPVCLPDGELLGVGVTIMEISELKRVEGALRLS 696 Query: 449 -----IEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDIL--------- 493 V +L +++E T + I + + ++ NR L P+ + Sbjct: 697 EAFAHARVQELETLMEITPAALWIAHDPDCHQMTANRTAYNLMRMPLGSVTTATPVDGSY 756 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551 PF + + + E + + + + + Sbjct: 757 PLPFKQYKNGQEYIPEDLPMQRAARTGQEVIDEIEFVFEDGTVRFIYGKAVPLYHDSGEV 816 Query: 552 SCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 DI+E KQ + + A++ AE + K +FLA +SHE+R+PL I+ Sbjct: 817 RGVIGAFVDITERKQAEREHEQLLARERAAREEAESANRIKDEFLAILSHELRSPLNPIL 876 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G++++++ ++F P + I+R+ + + +V+DLLD+++I GK+ L V L Sbjct: 877 GWTKLLRTRQFDPAATDKA---LATIERNATIQIQLVDDLLDVARILRGKVVLTRHRVDL 933 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 A+ AI VQL A K I I+ F + + D ++Q+ N+LSNA+ FTPSGGQ Sbjct: 934 AIAIKAAIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRLQQVVWNLLSNAVKFTPSGGQ 993 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ + V+DTG+G++ L F Q +S + G GLGL +A+ + Sbjct: 994 VEVTLATVDE-FAQITVKDTGIGISADILPHIFDYFRQADSSMTRQFGGLGLGLAIARHL 1052 Query: 785 VDANMGKFYIFS-TPAKGTLIEIIF 808 VD + G S +G + Sbjct: 1053 VDLHGGIIQADSPGEGQGATFTVRL 1077 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 56/586 (9%), Positives = 158/586 (26%), Gaps = 55/586 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHIDPNNH-IGDLLK-RQN 141 + D + + + +G+ + + + L + Sbjct: 68 IYECDLEQGIISWNAPYKELLGDRPESTAYSWEWWIEHLHPDDREEVVANFQETLAGTGD 127 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 W + +G+ + I + ++ + R G + A ++ + Sbjct: 128 RWGAEYRYQKTDGSYAH--ILDRGYILRNQTGK--AIRVIGTLFDATTQKQVEAELRQQE 183 Query: 202 KKFSHLHEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK---------- 250 + +E + +V YD ++ + + A Sbjct: 184 ECLRLANERFQFAARAVNALIYDWQITRNRVERTDGLTSILGYSLSEAEPTLNWWRDRIH 243 Query: 251 ---DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYL 303 + + E L+ +S E H N + Q +++ + Sbjct: 244 PDDGERIDQETATALSQGDSYRVEYRVLHKSNHYIHILDQGLVVTRDDQGHPIRVIGSTI 303 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 + + A + E D P + N +F + + + I Sbjct: 304 DISDRKATEATLKQRETDLRLITDAVPALIAYVDSDCRYRFVNRAFTTWFGHSAENLIGQ 363 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + ++ + + + + + + + + + Sbjct: 364 SV---ADFVGAEVYEYMSRDIEAALAGE----PINVEMWMPFKDGGSRY-VRRQYIPDID 415 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILST 477 + D + + + + ++ D + + N+ G ++ Sbjct: 416 PQGHVKGFYAFINDITDLKQIEAALRDREQRFSTLFNGMEDWVLVYPLTADNQPGQLIEV 475 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N K GY +++L L+ + + + + ++ TK + Sbjct: 476 NEPACKRLGYTRQELLTLSVADILDIPLADLQVSFQKLLQEKRVV----VESVHRTKAGQ 531 Query: 538 LLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + + L DI+E KQ + L ++ + + +A H+ Sbjct: 532 QIPVEVSSTLFMLDGLPTVQSICRDITERKQAELALRKSETVLNAFIASSPIGIAFFDHD 591 Query: 596 IR-----TPLTAIIG--FSEVIKNQRFG--PLGNPRYIEYANYIDR 632 +R L + G S+ + + P P + + I + Sbjct: 592 LRYLYANEALATMNGVPLSQHLGRTLWEVVPQMAPEFAPMLDQILQ 637 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 56/538 (10%), Positives = 147/538 (27%), Gaps = 58/538 (10%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHE--IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 R+ L L ++E +++G S ++ + P + + Sbjct: 47 ETRLQKTEERLSLVLRATKDAIYECDLEQGIISWNAPYKELLGDR---PESTAYSWEWWI 103 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + + L + + + + L+N + ++ + Sbjct: 104 EHLHPDDREEVVANFQETLAGTGDRWGAEYRYQKTDGSYAHILDRGYILRNQTGKAIRVI 163 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF---------FVYS---HGNLFYANPSFLLL 351 + + E + F +Y N + Sbjct: 164 GTLFDATTQKQVEAELRQQEECLRLANERFQFAARAVNALIYDWQITRNRVERTDGLTSI 223 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 Y + + + L + D + + + Sbjct: 224 LGYSLSEAEPTLNWWRDRIHPDDGERIDQETATALSQGD----SYRVEYRVLHKSNHYIH 279 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + + G + D + + ++ L I +A IA ++ + Sbjct: 280 ILDQGLVVTRDDQGHPIRVIGSTIDISDRKATEATLKQRETDLRLITDAVPALIAYVDSD 339 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 NRA + FG+ E+++ + F+ M+ + L+ + + Sbjct: 340 CRYRFVNRAFTTWFGHSAENLIGQSVADFVGAEVYEYMSRDIEAALAG---EPINVEMWM 396 Query: 532 STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K+ +R + ++DI++ KQ + L ++ + D Sbjct: 397 PFKDGGSRYVRRQYIPDIDPQGHVKGFYAFINDITDLKQIEAALRDREQRFSTLFNGMED 456 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 ++ PLTA + + + + + + +LL + Sbjct: 457 WVLVY------PLTA-----------------DNQPGQLIEVNEPACKRLGYTRQELLTL 493 Query: 648 SKIESGKMNLHFEPVSLDEAVSE---AISLVQLYANEKRILIRTS----FANNIPRIL 698 S + + L VS + + E + V ++I + S + +P + Sbjct: 494 SVADILDIPLADLQVSFQKLLQEKRVVVESVHRTKAGQQIPVEVSSTLFMLDGLPTVQ 551 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 28/250 (11%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + N + + E + + +++ +L +L AT D I + E Sbjct: 15 VVALQQQVGELDDKVNHYEQQLAQERETRQTVETRLQKTEERLSLVLRATKDAIYECDLE 74 Query: 472 GIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 I+S N +L G E + + L + + E L+ Sbjct: 75 QGIISWNAPYKELLGDRPESTAYSWEWWIEHLHPDDREEVVANFQETLA-GTGDRWGAEY 133 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + L + T+ D + KQ + +L ++ + + Sbjct: 134 RYQKTDGSYAHILDRGYILRNQTGKAIRVIGTLFDATTQKQVEAELRQQEECLRLANE-R 192 Query: 586 SDFLARVSHEI------------RTP-LTAIIGF----SEVIK---NQRFGPLGNPRYIE 625 F AR + + RT LT+I+G+ +E R P R + Sbjct: 193 FQFAARAVNALIYDWQITRNRVERTDGLTSILGYSLSEAEPTLNWWRDRIHPDDGERIDQ 252 Query: 626 YANYIDRSGN 635 G+ Sbjct: 253 ETATALSQGD 262 >gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134] gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134] Length = 670 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 128/617 (20%), Positives = 246/617 (39%), Gaps = 30/617 (4%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + E + + ++ + +V H E + LLT + Sbjct: 59 MQDTRLAVLVINTEMNVLLANETYCQWWQTTPEVV-NQANLQHLWSSASREWWHLLTLIK 117 Query: 267 SSL----PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + ++ H N Q T N+ +S + + + + Sbjct: 118 HAFIKQKAFEDVLHWHNNAQETVLDVKTRFIGNNGQSTYLMLTFEDITKRFQRERTLDRL 177 Query: 323 PETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 V V HG + + N SF +T Y+ + +IE L+ L L+ Sbjct: 178 SFVVKHINDFVIVTNEHGQIEWVNDSFNKVTGYE-LREIEGVP-LTKFLQQKDLNKEAIK 235 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + L + + + I + + Sbjct: 236 RIEAKIEKNE---IVEEELQNRRKDGLPYWN-KLTIRVMYDTAAHQKKYLSIHTNTTEYK 291 Query: 442 INKRKMEIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 +++ + + +L ++ + I I +R G I N A ++ Y ++L + + Sbjct: 292 AHEKYLSQLINELQHQQFAIDQAA-LITITDRNGYITHANEAFCRVSKYEEHELLGQKHS 350 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-LPFSSC---- 553 + P + + + K+ + + I L Sbjct: 351 LVNSGYHPRSFFKDMWGTVRKGM--LWRGEIHNRAKDGTFYWVDVTIVPFLYKDEGHDPY 408 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y DI+E K + +L AK AE+ + KS+FLA +SHEIRTPL I+G ++I+ Sbjct: 409 KYLFIRFDITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIEI 468 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + N + YA+ I +SG +L+ +N +LD+S+IE+ + + +E V++ E VS + Sbjct: 469 ES----DNETMLHYAHLIGQSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALV 524 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +++ AN + I + F ++L D ++Q+ N+L NAI FT GG + + + Sbjct: 525 QSLEVLANSRNIYLNIEFNLAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRL-ND 582 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + + V DTG+G+ + L++ +PF Q + R +G+GLGL +AK +V+ G Sbjct: 583 ENNCLTIEVIDTGIGIEEHFLKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDI 642 Query: 793 YIFSTPAKGTLIEIIFP 809 + S G+ +IFP Sbjct: 643 KVHSKKNLGSCFTVIFP 659 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 34/330 (10%), Positives = 96/330 (29%), Gaps = 19/330 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D +GY+ +E + +++G + V+ H + +++ W G+ Sbjct: 320 TDRNGYITHANEAFCRVSKYEEHELLGQKHSLVNSGYHPRSFFKDMWGTVRKGMLWRGEI 379 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT +V + + +P ++ ++ I + K Sbjct: 380 HNRAKDGTFYWVDVTI--VPFLYKDEGHDPYKYLFIRFDITERKNAEKQLIVAKDKAEEA 437 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + +K + + +++ S + + ++ + L + + Sbjct: 438 NRLKSNFLANMSHEIRT-PLNGILGVVQLIEIESDNETMLHYAHLIGQSGQ--RLLNTIN 494 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN------- 320 + + ++ L + +S E L++ + L+ F+ + Sbjct: 495 GILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLANSRNIYLNIEFNLAQKQVLIDPY 554 Query: 321 LTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 L + ++ F G N LT ++ I+ G+ Sbjct: 555 LLEQVLNNLLGNAIKFTERGGVTLRLNDENNCLT----IEVIDTGIGIEEHFLKEIFEPF 610 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 M R + + + ++ Sbjct: 611 KQESTGMERRFQGSGLGLAIAKKIVELMGG 640 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 6/122 (4%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+++ T + +IN E +L N + + E + + + +L Sbjct: 56 KSVMQDTRLAVLVINTEMNVLLANETYCQWWQTTPEVVNQANLQHLWSSASREWW--HLL 113 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 ++ + + ++ + + ++ LT DI++ Q + Sbjct: 114 TLIKHAFIKQKAFEDVLHWHNNAQETVLDVKTRFIGNNGQSTYLMLTFEDITKRFQRERT 173 Query: 571 LS 572 L Sbjct: 174 LD 175 >gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Anabaena variabilis ATCC 29413] Length = 1399 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 116/637 (18%), Positives = 237/637 (37%), Gaps = 34/637 (5%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSSLTEYYAH 249 P + F+ + V ++ + ++K +++S EY Sbjct: 626 KAPGRAERYFLVMFAEMPTAATSMLGVAGDETRQQKQTNNAQEINQLKQELASTKEYLQS 685 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + L + E L E+ + N T K+ + L RN Sbjct: 686 IIEEQQATNQDLRAANEEILSSNEELQSTNEELETAKEEIQATNEELNTINDELQRRN-- 743 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + N + IP + + P+ + D ++ Sbjct: 744 ---IESTQVSNDLQNLLSSINIPILMLGGDLRIRRFTPTAERIYNLIPTDIGRPLSDINH 800 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L+ L L + +Q N + + P+ + + Sbjct: 801 NLNISDLEQQIQEVIGTLTFK----------VQEVQDNEGHWYDLRIRPYRTMDNKID-- 848 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + ++ +I++ + + +++ ++ NR+ + F Sbjct: 849 GAVVVLVDIDALKRSAEQLRASRDYAEAIVDTMRESLVVLDLNLRVVRANRSFYETFQIQ 908 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + ++ L E + ++ + + ++ +LR+ +K+ Sbjct: 909 PTETEQRLIFDIGNGRWNIPQLRSLLEEIPPNITPFQDIEVGHNFEQLGYKTLRLNARKM 968 Query: 549 P---FSSCYSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRT 598 P + L + DI++ KQ + + A++ AE + K +FL+ +SHE+R Sbjct: 969 PQIDDTQLILLLIEDITQQKQLEAERTQLLAQEHSAREAAETANRAKDEFLSILSHELRN 1028 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G++ ++ + + I+RS +++DLLD+S+I SG++ + Sbjct: 1029 PLNTILGWASLLSTHQLEA---DTVNQGLEAIERSAQAQAHLISDLLDVSRISSGRLRMD 1085 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 +P+ L + AI++V+L A K I I T I+ D ++Q+ N+LSNAI F Sbjct: 1086 AQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLLSNAIKF 1145 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP G+I I+ +T +++ DTG G++ L + F Q S+ G GLGL Sbjct: 1146 TPVRGRIDITLEYTDF-HAQIQISDTGQGISPDFLPFIFERFRQADGSRTRSNTGLGLGL 1204 Query: 779 PLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 + + +V+ + G S G I PL T Sbjct: 1205 SIVRHLVELHGGTVAAQSPGEGLGATFTIRLPLQTTE 1241 >gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 713 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 207/497 (41%), Gaps = 19/497 (3%) Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 D ++K V + + NP+ + K + G L Sbjct: 227 LDLVPMARDRLMEKMNDGIIVVDNKERIVDINPAAKEIFSNKPEKLLGKNIG--QLFPDL 284 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 K + + + W E A++ + + + Sbjct: 285 KSTVGKND------------LCGNVYREQEIWRNEVKNTYNIHITPLADEQGNPLGKLIL 332 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + +I+ T + + I E L N + ++ GY E+I Sbjct: 333 LHNISELKKTEEILRESEEKYRAIVSNTHEMVYIYCGE-RFLFVNDRICEVTGYTREEID 391 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + + + D T E + ++ + + I Sbjct: 392 SMKVLDLVHPEEKEKIRQIMQKRADCKDAPATFETCIVTKKGRKRNVEIAISNITYEGEY 451 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI+E K+ +N L AK AE KS+F+ +SHE+RTPL +IIGFS+++ Sbjct: 452 ASLGSARDITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLE 511 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L N + Y + I +SG +L ++ND+LDISK+E+GK + E + +A+ + Sbjct: 512 VPGSELTNAHHK-YVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVE 570 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L++ A++K I I + N + AD+ KQ+ NIL+NA FT G++ + T + Sbjct: 571 MLIRPLASKKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFV-TAKS 629 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +E + V+D G+G+ + E +PF QI +++ R EGTGLGL L ++ V+ + G Sbjct: 630 GEKETSISVKDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNV 689 Query: 793 YIFSTPAKGTLIEIIFP 809 ++ S KG+ P Sbjct: 690 WVESEEGKGSTFIFTIP 706 Score = 43.5 bits (101), Expect = 0.15, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 8/134 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLWP 151 +++ + + G ++ M++ D+ + I + +T + Sbjct: 371 RFLFVNDRICEVTGYTREEIDSMKVLDLVHPEEKEKIRQIMQKRADCKDAPATFETCIVT 430 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G V I ++ + + G + + K K Sbjct: 431 KKGRKRNVEIAISNITYEGE------YASLGSARDITERKENENALIQAKMKAEVADRTK 484 Query: 212 KGHSSVEKEKYDIF 225 + + Sbjct: 485 SEFMTTMSHELRTP 498 >gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium TW-7] gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium TW-7] Length = 1107 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 103/518 (19%), Positives = 205/518 (39%), Gaps = 23/518 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + L E+ ++ + G++ N S + ++ + Sbjct: 255 GMVRYKMLLEEKSADESRLNAILETAIDAIVTIDHRGHILSFNASATHIFGWQEHEV--- 311 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKA 421 +L KL+ ++ + D I + + Sbjct: 312 KNKNIKMLMDEKLAKHH--DEYLSNAKDVNSNKVLGVNREIFAKHKEGHLFPIRIGIGEV 369 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNR 479 NQ + G + + R +R + + + S++ + ++ +L + Sbjct: 370 NQPGQTPLYVGYITDLTEQRELQRSLVEKEQKYRSLINNMPGAVFRCRLDDNWSMLFISP 429 Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 ++ +L GY ++ F + + + +T + + ++ + K Sbjct: 430 SILELTGYQSDEFTEHCLEFNDLILKTDQQAVIDAVTSAVKEKRQYSI--EYRIRHRNGK 487 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +L L + DI+E K+ + KL AK IAE+ + K F+A +S Sbjct: 488 VLWLLDQGSFYFNNKGEAQWIDGVFVDITERKEYEEKLEKAKLIAEEAAQAKQSFMANMS 547 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ +IIGFS+++ + N ++ ++ + +L ++N++LD +K+E G Sbjct: 548 HEIRTPMNSIIGFSDLLMDTPL----NNEQQKHLVTVNNAARSLLRLLNEVLDSAKLERG 603 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712 K+ + SL + IS L A +K +++ + ++ D ++QI N++ Sbjct: 604 KLTIEAVHFSLKPVIDSIISTFWLEAKKKDLILHLTIKESVQNTYYGDPDRLRQILTNLI 663 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI FT G + I+ + T N + V+DTG+G+ + +PF Q + R Sbjct: 664 GNAIKFTEHGS-VTITVSTTQNGHLFFEVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFG 722 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLG ++K +V+ G + S KGT PL Sbjct: 723 GTGLGTTISKQLVELMGGTINLVSEVNKGTCFYFSLPL 760 >gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein [Bacteriovorax marinus SJ] Length = 628 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 108/497 (21%), Positives = 200/497 (40%), Gaps = 53/497 (10%) Query: 328 KCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAI---- 381 + +G++ Y + +F L Y + E + Sbjct: 27 NASDGVHILTQNGDVVYCSTTFADLLGYSLEEAHELNVKDWDRHFPVEDMIPVIKDLIEN 86 Query: 382 ---KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + I+ + + L + Sbjct: 87 PKIFETKHEKKNGEIFNVEINARGIELDGDFFLY-------------------ASSRDIT 127 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + +L SI T D +I+ G I S N + KLFG +++L Sbjct: 128 GVKKEAMVNRKNHAKLQSIFRTTPDAFFVIDSSGRIESVNDKLIKLFGLSEKELLGTNID 187 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--L 556 +L+ + ++ + ++K+ +++ + I + + Sbjct: 188 KYLKVDVTKLVGE--------------TEELEFTSKDGRVVPISINVGEARTEDGLYLTG 233 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DISE K+ + +L ++ A KS FLA +SHEIRTP+ I+G + ++K+ Sbjct: 234 IIRDISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDTSLN 293 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 PL E + I+ G+ +L I+ND+L SKIESGK+++ +L ++V + SL+ Sbjct: 294 PL----QEEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIA 349 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-N 734 A+EK I I + N+IP+ + +D+ +KQI N+LSNA+ F+P ++ + T N Sbjct: 350 NIASEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCN 409 Query: 735 EEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ V+D G+GM+ E + + F Q + GTGLGL ++ + GK Sbjct: 410 GNIVKVLFSVKDNGIGMSEEEQSRLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGK 469 Query: 792 FYIFSTPAKGTLIEIIF 808 + S +G+ Sbjct: 470 IKVESRKGEGSKFSFEL 486 Score = 42.3 bits (98), Expect = 0.34, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 22/160 (13%) Query: 66 NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125 N+ ++ F P F ID+ G ++ ++++L K G +++G Sbjct: 139 NHAKLQSIFRTTPDAF---FV--IDSSGRIESVNDKLIKLFGLSEKELLGT--------- 184 Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 +ID + T + +G + + I++ R G GI+ Sbjct: 185 NIDKYLKVDVTKLVGETEELE--FTSKDGRVVPISINV------GEARTEDGLYLTGIIR 236 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + + K + K + + Sbjct: 237 DISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTP 276 >gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1015 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 114/554 (20%), Positives = 216/554 (38%), Gaps = 32/554 (5%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGN 340 + + + L+ D + + V G Sbjct: 318 LIGRAWKRREADREALLRQDAEYTAKLEQLNRQTDAAWRQSELILSSAAEGICGVDLEGR 377 Query: 341 LFYANPSFLLLTKYKSVD-------DIEIAGGLS---------TLLDAPKLSDNNAIKPV 384 + + NP+ + + + D+ + + + + + Sbjct: 378 VIFVNPAARKMFGWNENEGIGLNLHDLTHHHDIDGKPFHNEDCPVFKTLRDGERRHVSDG 437 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + +R D + + +I+ + + + A+ E + + Sbjct: 438 LYWRKDGSSFPVEFTVSSIERDGKVTGAVNVFRDITERTRIEAELERHHRHLAELVQQRT 497 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ + ILE+++DG+ I+ GII N A + GY E ++ P + Sbjct: 498 SELMQTEARASHILESSADGLYGIDCNGIITFINPAACAILGYGAEQVIGLPAHSLFHHS 557 Query: 505 TPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSL 556 + L L + ++ + + + + + Sbjct: 558 KQDGSPYSAADCPSYNALRLGQKVRVDDEVYW-HADGHAVPVMYATHPMLQNGQITGAVT 616 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+S + A AE + KS+FLA +SHEIRTPL ++GF+++ Sbjct: 617 SFIDVSVQRAAAQAREQALIAAESLAKIKSEFLANMSHEIRTPLNGVLGFAQI---GYRN 673 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + I SGN +L ++ND+LD SKIE+GK+ + V L E V A+ L++ Sbjct: 674 AENSEKARDSFAKIQLSGNRLLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLR 733 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K+I ++ A ++P ++D + Q+ LNILSNA+ FT G + +S Sbjct: 734 ERARAKQIELQVELAPDLPLTCISDPLRMGQVLLNILSNAVKFTEVGS-VTLSVNCRD-G 791 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ +V DTG+GM+ ++ PF Q+ S + GTGLGL ++K +++ GK I Sbjct: 792 MLLFKVADTGIGMSAEQIGTLFNPFHQVDASASRKFGGTGLGLAISKRILELMNGKVSID 851 Query: 796 STPAKGTLIEIIFP 809 S P GT +E P Sbjct: 852 SLPGVGTSVEFCLP 865 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 16/195 (8%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPR----TVRFTWNIDAHGYLKEISEELPKT 105 ++ Q+ E + L+ + + +D G + ++ K Sbjct: 329 DREALLRQDAEYTAKLEQLNRQTDAAWRQSELILSSAAEGICGVDLEGRVIFVNPAARKM 388 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPN-------NHIGDLLKRQNTWYGKTTLWPIEGTNLY 158 G + IG+ L D++ ID L + W +G++ Sbjct: 389 FGWNENEGIGLNLHDLTHHHDIDGKPFHNEDCPVFKTLRDGERRHVSDGLYWRKDGSSFP 448 Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 V ++++ R+ + +G + A +R + + L + + Sbjct: 449 VEFTVSSI---ERDGKVTGA--VNVFRDITERTRIEAELERHHRHLAELVQQRTSELMQT 503 Query: 219 KEKYDIFSQQSPPPH 233 + + + S Sbjct: 504 EARASHILESSADGL 518 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 10/100 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD------LLKR 139 + ID +G + I+ +G A ++IG+ + D + + L+ Sbjct: 518 LYGIDCNGIITFINPAACAILGYGAEQVIGLPAHSLFHHSKQDGSPYSAADCPSYNALRL 577 Query: 140 QNTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 W +G VP+ A P+ +N + +G Sbjct: 578 GQKVRVDDEVYWHADGHA--VPVMYATHPML-QNGQITGA 614 >gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4] Length = 1514 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 123/758 (16%), Positives = 269/758 (35%), Gaps = 48/758 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + DA+GY ++E + G + +G D + + + ++ Sbjct: 768 IFQTDANGYCNYVNERWIEYAGIDYNEAMGYGWADAIHPDDRERITIEWEAYMKSSSKEL 827 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +T+ + + + + +G+ G + +K F Sbjct: 828 ETSFRFKHKNGKITWVSVKTVGTFDSKNNINGYIGMAL--DVTDRKIAEEKLINSEKLFR 885 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 L + + D + Sbjct: 886 ELTSNAPVGIFKMDLDGTCNYVNATWVKYADMSYNDAMGFGWTQAIHPEDRDRVLQSWMK 945 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE- 319 S + + F N + + + Y+ + ++ E Sbjct: 946 -AVSLKKNYYVDLRFKNKKGKITWLSVSAVRTFNANNKLYGYIGVALDVTTKKNNEKLEI 1004 Query: 320 ---NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 ++ P FV L N + L + K+ Sbjct: 1005 KHKQYLNNIINNIGDPVFVKDENSKLILVNNALCSLFNLPREQILGKT-------LTEKV 1057 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + + + T+ N + ++ + + + G+ Sbjct: 1058 PYEERERFLEIDKQVLATGVENVNEETVSLNNQIIRTLSVKKTRYIDVSNKKLL-IGVIR 1116 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + ++ K++ + + ++++ G +IIN + I + N A++ + E ++ Sbjct: 1117 DITERKKDEIKIKESQEKFLKVFQSSAIGYSIINMDQIRIDVNEALAGMLETTREHLIGN 1176 Query: 496 PFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + ++++ + + ++ L + + ++ Sbjct: 1177 KLEDPTVEIIDAKYYEQKDKLFKKMMTQGFLSNEKLTRTLVSGKKISLLVSVEAIEIGGE 1236 Query: 552 SCYSLTMHDISEWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVS 593 + D +E ++ + +L + + A+ KS FLA +S Sbjct: 1237 PHALFAVIDNTEKQKSELELEIYRNKLEDLVELRTLELEKEKEKAQSADLMKSAFLATMS 1296 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTP+ +IIGF+ ++ Q GPL N + + SG +L ++ND+LD+SKIE+G Sbjct: 1297 HELRTPMNSIIGFTGILLKQLAGPL-NDEQKKQLTMVKSSGESLLSLINDILDVSKIEAG 1355 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K+N+ + E + + I+ + A +K + I+T +N I +D R V+QI LN++S Sbjct: 1356 KLNVAYSAFKYLEILEKTIAFLTPQAEKKGLKIKTEISNFDIVIESDERRVEQILLNLIS 1415 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILR-VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI F+ G IIS ++ + D G+G+ ++ +PF Q+ R E Sbjct: 1416 NAIKFSNKG---IISIKVKLEGNFVITKIIDQGIGIEAKHIKTLFEPFVQLEAGLSRRHE 1472 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL ++K++V+ G+ + S +G+ PL Sbjct: 1473 GTGLGLSISKSLVEKLGGEILVKSQLGEGSTFTFKLPL 1510 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 59/505 (11%), Positives = 142/505 (28%), Gaps = 25/505 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143 + + G +++ K G + +G D D + L +++ Sbjct: 642 MFKTNKEGECIFVNDGWIKYSGLTYQQSLGYGWTDSIHPDDKDRILSGWHQALKNKEDYL 701 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + + + ++ N++F G+ G I + + Sbjct: 702 TDLRFVNKKD---EILWFTSKSAALFDDNKQFQGYVGLLI--DITERKAAEEKLIKSEHL 756 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEK 258 F L + ++ + + + E Sbjct: 757 FKRLTSKAPAGIFQTDANGYCNYVNERWIEYAGIDYNEAMGYGWADAIHPDDRERITIEW 816 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE- 317 + S L F N ++ Y+ + +E Sbjct: 817 EAYMKSSSKELETSFRFKHKNGKITWVSVKTVGTFDSKNNINGYIGMALDVTDRKIAEEK 876 Query: 318 ---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E L E P+ F + G Y N +++ D + G + Sbjct: 877 LINSEKLFRELTSNAPVGIFKMDLDGTCNYVNATWVKYADMSYNDAM-GFGWTQAIHPED 935 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ M S + R + ++ N + G+ Sbjct: 936 ---RDRVLQSWMKAVSLKKNYYVDLRFKNKK---GKITWLSVSAVRTFNANNKLYGYIGV 989 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + N++ L +I+ D + + + ++ N A+ LF P E IL Sbjct: 990 ALDVTTKKNNEKLEIKHKQYLNNIINNIGDPVFVKDENSKLILVNNALCSLFNLPREQIL 1049 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSS 552 K T + ++L+ + E+ + + + LS++ + Sbjct: 1050 GKTLTEKVPYEERERFLEIDKQVLATGVENVNEETVSLNNQIIRTLSVKKTRYIDVSNKK 1109 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKI 577 + DI+E K+++ K+ +++ Sbjct: 1110 LLIGVIRDITERKKDEIKIKESQEK 1134 Score = 114 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 54/505 (10%), Positives = 141/505 (27%), Gaps = 25/505 (4%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G ++ + +G +++ + D + N ++++ WYG+ Sbjct: 394 GEPIYLNTKGRALVGLEKDEVLPNSISDFFPKEYNKVIENEHMPAIEKEGKWYGEANFKN 453 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + TN +PI+++ I + G + + + + K + +K I Sbjct: 454 FK-TNNLLPIEMSGFAIKDSKTQQPIALGV-VASNIKKRKESESKIKNIQQKLQAAVRIG 511 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKN----KVSSLTEYYAHKDDVLKTEKY-PLLTSEE 266 D + + H DD E+ + + Sbjct: 512 NIGYWSWDIVKDEVFWSDILYEIYDVDINKKLNYETVLSRVHPDDKAFHEEITKNRINNK 571 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 S+ P + + + N ++ + + +E + Sbjct: 572 STEPFEYKVLRQDNTIRYVMVQMEVIVNEMNKAIMFQGTVIDITERKAAEEKLRDSELLF 631 Query: 327 DKC----PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 P+ F G + N ++ + + G ++ K + Sbjct: 632 RGLTHGAPVAMFKTNKEGECIFVNDGWIKYSGLTYQQSL-GYGWTDSIHPDDKDRILSGW 690 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + D L + E L T + + G+ + + + Sbjct: 691 HQALKNKED-----YLTDLRFVNKKDE-ILWFTSKSAALFDDNKQFQGYVGLLIDITERK 744 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + K+ + GI + G N + G + + + + Sbjct: 745 AAEEKLIKSEHLFKRLTSKAPAGIFQTDANGYCNYVNERWIEYAGIDYNEAMGYGWADAI 804 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557 + + + ++ LE K K+ + + S + Y Sbjct: 805 HPDDRERITIEWEAYMKSSSKE-LETSFRFKHKNGKITWVSVKTVGTFDSKNNINGYIGM 863 Query: 558 MHDISEWKQEKNKLSHAKKIAEKES 582 D+++ K + KL +++K+ + + Sbjct: 864 ALDVTDRKIAEEKLINSEKLFRELT 888 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 11/143 (7%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 QL S L + SDG ++ N + G E ++ K + S Sbjct: 260 ETQLISTLNSISDGFVSLDSNWCYTYLNDKAVEYIGRSRESLIGKNMWEEFPEGVGSNFY 319 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + S Q E G K I S+ ++ DI+E K++ + Sbjct: 320 KTYKKAFSTQETQYFEDYYQGLDK-----WFENRIYP--SSNGLAIYFTDITEKKKQDKQ 372 Query: 571 LSHAKKIAEKESSHKSDFLARVS 593 ++ +F+ S Sbjct: 373 ----NQMLLSLVETSDEFIGLAS 391 >gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum nigrificans DSM 574] Length = 453 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 171/365 (46%), Gaps = 26/365 (7%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E + +IL + +DG+ +++ ++ N AV +FG + L + + Sbjct: 110 EERNRAQAILNSMADGVIALDKYRRVILLNPAVKDVFGLKENEGLGMDLIKVI----RNY 165 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 L + + + T E + + + K + DI+E ++ Sbjct: 166 ELDDLFSQALHNQKTIVSNELQILTPEPRFFRVHVSPLKGINGEIIGVVGLLRDITERRK 225 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR-YIE 625 + +++F+A VSHE+RTPLT+I GF E + + G + +P+ Sbjct: 226 LE--------------RMRTEFVANVSHELRTPLTSINGFLETLLD---GAIEDPKTARH 268 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + ++ + ++++DLL +S++E K L+ +PV L + ++ I + + A EK I Sbjct: 269 FLEIMNAETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIK 328 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + T + +P++ D + Q+ +N++ NAI +TP+ GQ+ + E+V + V DTG Sbjct: 329 LFTVLPDKLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLN-REKVRVYVADTG 387 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L + + F ++ ++ GTGLGL + K +V+ + G+ + S P G+ Sbjct: 388 IGIPQEDLPRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFS 446 Query: 806 IIFPL 810 PL Sbjct: 447 FTLPL 451 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 7/161 (4%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + ++ + G + +GM L V +D + L Q T Sbjct: 134 RVILLNPAVKDVFGLKENEGLGMDLIKVIRNYELD--DLFSQALHNQKTIVSNELQIL-- 189 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 T + P+ N E G G++ + SH Sbjct: 190 -TPEPRFFRVHVSPLKGINGEIIGV--VGLLRDITERRKLERMRTEFVANVSHELRTPLT 246 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + E + + P +++ T+ A+ D L Sbjct: 247 SINGFLETLLDGAIEDPKTARHFLEIMNAETKRLANLIDDL 287 >gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 965 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 127/674 (18%), Positives = 242/674 (35%), Gaps = 64/674 (9%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTE 245 +A ++ + +++ L E+ + + + L Sbjct: 138 AQTKAALQQSEHRYATLAEVVPVAIFRLDADGNCIYVNDRWSQITGEPIQAALGRGCLDT 197 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + D L + +LT E+ + F + + + + Y+ Sbjct: 198 IHPEDSDRLFHQWTEVLTQEKMYC-YEGKFLRKDGTTIWFYMQILPETDQNVTTIGYVGT 256 Query: 306 RNHPSLSAYF------------DEGENLTPETVDKCPIPFFVYSHGNLFY--------AN 345 S E E + ++ + G + + Sbjct: 257 LTDISEQQAALDDGLRPTIGDLIEAEAKLRKISERLTLAISSGRFGIWEFDCVQEKVIWD 316 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 L +D P D + + ++ A IQ Sbjct: 317 ERMYELYGVHP-EDFPGNFDAWLSFVHPDDQDYLLVTIQQVLHQNQE---YDAEFQIIQP 372 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + E + ++ + + GI + + + ++++ I ++D + Sbjct: 373 SGE-IRVIKAYGVLNCDEQGKPILMVGINIDITERKQAEQELIHNRDLREVIFNESADAL 431 Query: 466 AIINREGIILS-TNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 +++ ++ NR +LF ++L + S + + Sbjct: 432 FLVDPVTLLTLDCNRRTVELFEATNKGELLGIEGRTLQRRPFTSNEIDTIVTQMQTKGFW 491 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKE 581 + E + KL I K + + + DI+E KQ + KL + K Sbjct: 492 SQEIEYVTLK--GKLFWGNIAAKPITIAGRTLNLVRVTDINERKQAEEKLLRTNEQLAKA 549 Query: 582 S-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + K +FLA +SHE+RTPL AI+G SE FG + N + + I RSG Sbjct: 550 NAELARATRLKDEFLANMSHELRTPLNAILGMSEGFIEGVFGAI-NQKQAKAIATIKRSG 608 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++ND+LD+SKIESGK+ L VS+ +++ +Q A +K I + T +N+ Sbjct: 609 KHLLELINDILDLSKIESGKLELQISDVSVRSICDGSLTFIQQMALKKNICLSTHIGSNL 668 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------------- 735 I D R ++Q+ +N+LSNA+ FTP GG + ++ Sbjct: 669 DTIQVDDRRLRQVLINLLSNAVKFTPEGGNVKLTVWLEEVGTNETLGAEKLISQSSIPSP 728 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + RV DTG+G+ + ++ K +PF Q+ +S GTGLGL L K + + G + Sbjct: 729 HICFRVTDTGIGIASEDISKLFQPFTQLDSSLNRNYTGTGLGLALVKRITTLHGGTILVN 788 Query: 796 STPAKGTLIEIIFP 809 S +G+ + P Sbjct: 789 SEVGQGSCFTVRIP 802 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 6/153 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 K ++ + ++ E I ++ +G + N S++ G P++ L + Sbjct: 136 QLAQTKAALQQSEHRYATLAEVVPVAIFRLDADGNCIYVNDRWSQITGEPIQAALGRGCL 195 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554 + + H TE+L+ + E L K+ + + I + Y Sbjct: 196 DTIHPEDSDRLFHQWTEVLTQEKMYCYEGKFL--RKDGTTIWFYMQILPETDQNVTTIGY 253 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 T+ DISE + + E+ K Sbjct: 254 VGTLTDISEQQAALDDGLRPTIGDLIEAEAKLR 286 Score = 74.7 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 46/443 (10%), Positives = 118/443 (26%), Gaps = 58/443 (13%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 + +DA G +++ + G +G D D H ++L ++ + Sbjct: 162 IFRLDADGNCIYVNDRWSQITGEPIQAALGRGCLDTIHPEDSDRLFHQWTEVLTQEKMYC 221 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----- 199 + +GT + + LP +N G+ G + G R Sbjct: 222 YEGKFLRKDGTT--IWFYMQILPETDQNVTTIGY--VGTLTDISEQQAALDDGLRPTIGD 277 Query: 200 -----------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSS 242 ++ + + G + + + + P N + Sbjct: 278 LIEAEAKLRKISERLTLAISSGRFGIWEFDCVQEKVIWDERMYELYGVHPEDFPGNFDAW 337 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 L+ + D L +L + E + + K Y + + Sbjct: 338 LSFVHPDDQDYLLVTIQQVLHQNQEYDAEFQIIQ-PSGEIRVIKAYGVLNCDEQGKPILM 396 Query: 303 LSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKS 356 + + ++ +L ++ F+ L N + L + + Sbjct: 397 VGINIDITERKQAEQELIHNRDLREVIFNESADALFLVDPVTLLTLDCNRRTVELFEATN 456 Query: 357 VDDIEIAGGLS-----------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 ++ G + + + + + + I Sbjct: 457 KGELLGIEGRTLQRRPFTSNEIDTIVTQMQTKGFWSQEIEYVTLKGKLFWGNIAAKPITI 516 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIE-----VMQLCSILE 459 + + Q E + + + + + + +++ E +L + L Sbjct: 517 AGRTLNLVRVTDINERKQAEEKLLRTNEQLAKANAELARATRLKDEFLANMSHELRTPLN 576 Query: 460 A---TSDGIAIINREGIILSTNR 479 A S+G EG+ + N+ Sbjct: 577 AILGMSEGFI----EGVFGAINQ 595 >gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1090 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 132/798 (16%), Positives = 269/798 (33%), Gaps = 96/798 (12%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152 IS + +G ++ + ++ + + L+ Q Y Sbjct: 58 LFISPRWKEMLGYQDQELPNRFDTWKQLLHPQDVERVMEAVQNHLEGQTNHYQIEFRLRC 117 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---E 209 + N I +++ + R G + + L + L L + Sbjct: 118 QDGNYK-WILSKGKALWNSAGK--AIRMVGSHSDISDRKEEQILLRSLIDSIPDLIFCKD 174 Query: 210 IKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + ++D + EK +EE Sbjct: 175 AQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHRNEEWI 234 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++ + G L S + + + + ++L + Sbjct: 235 TYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLSSIARQ 294 Query: 329 C-------PIPFFVYSHGNLFYANPSF-------LLLTKYKSVDDIEIAGGLSTLLDAPK 374 + F + + G+ + + L L + Sbjct: 295 LIDQDFNTAVNFTLEALGHFTDGDRGYIIRYSPQQRLWNMTHEWCNYQVPST---LQQSQ 351 Query: 375 LSDNNAIKPVMLYRSDRTCI--------AASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + I A + + + + +P A Q Sbjct: 352 NIPVEYLPWFSRQLLNGQPICVNSLDDLPPQAIAERVVFKNSLNPTLVVVPMVTAGQTVG 411 Query: 427 NMPQNGIEPED-------------------VDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + IL+ ++ I Sbjct: 412 YLGFDANSSKIWTQEEVNLLKLVGEFIAIAQARSQAEDDRKESEARFAGILDNANEAIIS 471 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524 I+ + I N A K FGY ++L +PF + Y+ + L + Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + G ++ + I K+ ++ + DI+E +Q + L AK+ A+ + Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAAN 591 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHE+RTPL AI+GF++V++ R NP + + + I RSG +L+++N Sbjct: 592 RAKSEFLASMSHELRTPLNAILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELIN 648 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+L++SKIE+G+ H L + +++ L A EK + + +P+ + D Sbjct: 649 DILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDE 708 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT----------------------------- 732 ++Q+ +N+L NAI FT GG + + Sbjct: 709 GKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIA 767 Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +E++++ V D+G G+ E+++ FGQ +Q + EGTGLGLP+++ V G Sbjct: 768 DSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQ-EGTGLGLPISRKFVQLMGG 826 Query: 791 KFYIFSTPAKGTLIEIIF 808 + S +G+L Sbjct: 827 NISVSSILGQGSLFAFSI 844 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 83/316 (26%), Gaps = 19/316 (6%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYA 344 +Q LQ E + + + ++ + Sbjct: 3 EQIIKQLQQEIATLKAVQQATLKIQQE--LQESQERWQLIIQATNEGIWDWNLRTNELFI 60 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 +P + + Y+ + + L P+ D + + + ++ Sbjct: 61 SPRWKEMLGYQDQE-LPNRFDTWKQLLHPQ--DVERVMEAVQNHLEGQTNHYQIE-FRLR 116 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 N + N + + G + D + E + L S++++ D Sbjct: 117 CQDGNYKWILSKGKALWNSAGKAIRMVGSHSDISDRK-------EEQILLRSLIDSIPDL 169 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I + +G+ N A G P ++I+ K + Sbjct: 170 IFCKDAQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHR 229 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E+ +LL DI++ KQ++N + K S Sbjct: 230 NEEWITYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLS 289 Query: 583 SHKSDFLARVSHEIRT 598 S + + + T Sbjct: 290 SIARQLIDQ---DFNT 302 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 40/365 (10%), Positives = 92/365 (25%), Gaps = 35/365 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKR-QNTW 143 ID + + KT G A ++G + D + L+ + Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531 Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLD 201 + +G+ + ++ + + G + F IV K+ Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKI-------QLKGRKLFTAIVRDITERQQAEEALKQAK 584 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + K + + + ++ + +L + ++ L Sbjct: 585 EAADAANRAKSEFLASMSHELRT-PLNAILGFTQVMRRDRTLNPEHQQNLSIISRSGEHL 643 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + + I + T L L + E Sbjct: 644 L----ELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPE 699 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 P+ ++ G L + L GG++ + + S Sbjct: 700 VPQYLET--------DEGKLRQV---LINLLGNAIK--FTEEGGVTLRVKSEVRSRKGGF 746 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R+ A L I + E + + PE + Q +T Sbjct: 747 RESATLRTIDLEKPA---LTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETG 803 Query: 442 INKRK 446 ++ Sbjct: 804 RQAQE 808 >gi|307943987|ref|ZP_07659329.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] gi|307772828|gb|EFO32047.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4] Length = 1168 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 120/653 (18%), Positives = 245/653 (37%), Gaps = 31/653 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKN--- 238 N+ ++ + + S + E D+ S L+ ++ Sbjct: 253 RKNKALQAATQRAEQGEAQVSAILENMLDGVLTLNPSGDVLSINPAAQEMFGLQDEDSLE 312 Query: 239 --KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 +V + A L ++ + + S ++ + L+ + Sbjct: 313 NIEVFKVLPAIAQLIKPLSMDEVGRIRAGSDSSSKRLETSARRLDGQHFPSELSLTRTRL 372 Query: 297 KESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351 + + + + E + ++ P F +Y L N + Sbjct: 373 GGVETFTAIVRDLTDQKKAAEELRRAETRLVDAIESLPDGFVLYDKDDRLVVCNSKYKEF 432 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D+ G + + + + I H Sbjct: 433 YHLS--ADLSEPG---NRFEDIIREGAHRGQYQFDAGTVDDRIEQRLEQHRNPGEPMEQF 487 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 G + + + ++++ L +++ A+ DG+ ++N E Sbjct: 488 LADGRWLRVFEARTSEGGLVGFCVDITELKHREQELLRSQGLLQNVVSASFDGVIVMNAE 547 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTL--EKI 528 G++L N A +FG+ ++I+ + + F+ L+ L+ + Sbjct: 548 GVVLDFNPAAEDVFGWTSDEIVGERLSDFIIPEHLREAHEAGLSHYLATGEGPVIGKRIE 607 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 G K+ +L + + I++ + + + DI+E K L AK+ AE + K+ Sbjct: 608 IQGLHKQGHILEVELAIRQTTSDTGPLFLGYVRDITERKAADEALRDAKERAEAANEAKA 667 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHEIRTP+ ++G ++++ NP Y SG +L+++ND+LD Sbjct: 668 KFLAMMSHEIRTPMNGVLGILSLLRDTNL----NPAQEIYVKTARESGRSLLELINDILD 723 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 SK+E+ ++ L P +L AV + L A EK + + F +++PR ++ D ++ Sbjct: 724 FSKLEASRVELDQAPFNLRTAVKSVVDLFTPIAQEKALELNWRFPSDLPRNVVGDAGRLR 783 Query: 706 QIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762 Q+ LN +SNAI FT G ++ + + ++ V+DTG+G+ + + F Sbjct: 784 QVLLNFVSNAIKFTELGSVEVNVGLEKSDPQKPVFRFSVKDTGIGIPAEKHDALFGDFVT 843 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + R GTGLGL ++K + D G+ + S P G+ PL + Sbjct: 844 VDGASTKRYGGTGLGLAISKQIADLMEGEITLESLPGAGSTFHFFVPLTLSEE 896 Score = 80.8 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 34/417 (8%), Positives = 95/417 (22%), Gaps = 30/417 (7%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110 + +N+ + T + V + + ++ G + I+ + G Sbjct: 248 AAEEQRKNKALQAATQRAEQGEAQVSAILENMLDGVLTLNPSGDVLSINPAAQEMFGLQD 307 Query: 111 FKMIG-----MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 + L ++ ++ + +G + ++ + + P +L+ Sbjct: 308 EDSLENIEVFKVLPAIAQLIKPLSMDEVGRIRAGSDSSSKRLETSARRLDGQHFPSELSL 367 Query: 166 LPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 G F IV +R + + E + + + Sbjct: 368 TRTR-----LGGVETFTAIVRDLTDQKKAAEELRRAETRLVDAIESLPDGFVLYDKDDRL 422 Query: 225 ------------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 S P R ++ + + T + E Sbjct: 423 VVCNSKYKEFYHLSADLSEPGNRFED-IIREGAHRGQYQFDAGTVDDRIEQRLEQHRNPG 481 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 E + + F + + + L V Sbjct: 482 EPMEQFLADGRWLR-VFEARTSEGGLVGFCVDITELKHREQELLRSQGLLQNVVSASFDG 540 Query: 333 FFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 V + G + NP+ + + S + + ++ + A L + Sbjct: 541 VIVMNAEGVVLDFNPAAEDVFGWTSDEIVGERLS-DFIIPEHLREAHEAGLSHYLATGEG 599 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 I + + + + G + + + + Sbjct: 600 PVIGKRIEIQGLHKQG---HILEVELAIRQTTSDTGPLFLGYVRDITERKAADEALR 653 Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 69/263 (26%), Gaps = 28/263 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQ-NTWYG 145 ++A G + + + G + +++G RL D H+ + L G Sbjct: 544 MNAEGVVLDFNPAAEDVFGWTSDEIVGERLSDFIIPEHLREAHEAGLSHYLATGEGPVIG 603 Query: 146 KTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 K +G L ++LA S G V + + Sbjct: 604 KRIEIQGLHKQGHILE--VELAIRQTTSDTGPL----FLGYVRDITERKAADEALRDAKE 657 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPL 261 + +E K ++ + P + +S L + + + Sbjct: 658 RAEAANEAKAKFLAMMSHEIR-------TPMNGVLGILSLLRDTNLNPAQEIYVKTARES 710 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 S + + DF + ++ Q L+ K + + + Sbjct: 711 GRSLLELINDILDFSKLEASRVELDQAPFNLRTAVKSVVDLFTPIAQEKALELNWRFPSD 770 Query: 322 TPETVDKCPIPFFVYSHGNLFYA 344 P V V G L Sbjct: 771 LPRNV--------VGDAGRLRQV 785 >gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon] Length = 1037 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 100/609 (16%), Positives = 204/609 (33%), Gaps = 26/609 (4%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + K +++ +K+ + LK S Sbjct: 445 VLDPDGDIIKANKAAFNLLGYSEAELIGMSFDKIVGKPKQEEEGKIELKKLIREPEASIT 504 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEGENLTPET 325 + + + E E Sbjct: 505 NLETTYLTKDRREIPVNFAASIMKNENGELQGIVCNACDITERKQAEEALRESEERFRAI 564 Query: 326 VDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + F+ NP+ L + I L + I+ V Sbjct: 565 SETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTD--DDLF---DKEAASHIREV 619 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + I + E + GI + + + + Sbjct: 620 DSHVLKGETVEEEHTKKIK----GVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRAE 675 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + + SI E+ D A + +G IL ++ GY E++L + F Sbjct: 676 EALRESEERYRSIFESIQDVYAAVAMDGTILEITPSIQSFSGYAPEEVLGRSLAEFYVYP 735 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 L + + + K + ++ +K + +S TM D Sbjct: 736 EQRA--ALLERLRLGG--SVNDYEVVLRHKTGRAVTSSFTVKVVTDASGTPVKIVGTMRD 791 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E K+ ++ K + K++FL HE+R+PL I+G++ +++ N Sbjct: 792 VTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASLLEQGEL----N 847 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +Y I+ S + + +++ +L+++++E+GK L E +S+ E V+ + A+ Sbjct: 848 EKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNNVLERFGPQAD 907 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K+ I + D + + I N++SNAI +T G+I I + + Sbjct: 908 AKKQTISAVVPEGT-EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVVEDRKEG-IRVC 965 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ +L +A + F S + + G GLGL + K V + G+ ++ S K Sbjct: 966 VADTGIGIPKEQLPRAFERFFMADTSLRRK-GGLGLGLAIVKGYVKLHGGEVWVTSELGK 1024 Query: 801 GTLIEIIFP 809 G+ P Sbjct: 1025 GSKFWFTLP 1033 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 102/330 (30%), Gaps = 21/330 (6%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 S + T++ V G++ AN + L Y + I Sbjct: 415 MAQRIKNSFTETVIKKELENTLNTMTDTLIVLDPDGDIIKANKAAFNLLGYSEAELIG-- 472 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 ++ PK + I+ L R + + T + + F N+ Sbjct: 473 MSFDKIVGKPKQEEEGKIELKKLIR--EPEASITNLETTYLTKDRREIPVNFAASIMKNE 530 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E + + + + + + +I E D I I +R N + + Sbjct: 531 NGELQGIVCNACDITERKQAEEALRESEERFRAISETAQDSIFIKDRALKYTLVNPTMER 590 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 LFG P I+ K ++ S + + +L + + + L S + Sbjct: 591 LFGLPASKIIGKTDDDLFDKEAASHIREVDSHVLKGETVE----EEHTKKIKGVLFSFHV 646 Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----- 594 I + +S DI+E K+ + L +++ D A V+ Sbjct: 647 IKVPMRDNSGEVIGLCGIARDITERKRAEEALRESEERYRSIFESIQDVYAAVAMDGTIL 706 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 EI TP +I FS + G Y+ Sbjct: 707 EI-TP--SIQSFSGYAPEEVLGRSLAEFYV 733 Score = 97.8 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 40/377 (10%), Positives = 101/377 (26%), Gaps = 28/377 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145 +D G + + ++ +G ++IGM + + I + Sbjct: 446 LDPDGDIIKANKAAFNLLGYSEAELIGMSFDKIVGKPKQEEEGKIELKKLIREPEASITN 505 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +TT + +P++ AA + + N E G + +++F Sbjct: 506 LETTYLTKDRR--EIPVNFAASIMKNENGELQGI--VCNACDITERKQAEEALRESEERF 561 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + ++ L +K+ T+ + + Sbjct: 562 RAISETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTDDDLFDKEAASHIREVDS 621 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + E+E I ++ +++NS E + +E + Sbjct: 622 HVLKGETVEEEHTKKIKGVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRAEEALRES 681 Query: 323 PE----TVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + V G + PS + Y + + L + Sbjct: 682 EERYRSIFESIQDVYAAVAMDGTILEITPSIQSFSGYAPEEVLG------RSLAEFYVYP 735 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + R + L + ++ +F + + G + Sbjct: 736 EQRAALLERLRLGGSVNDYEVVL---RHKTGRAVTSSFTVKVVTDASGTPVKIVGTMRDV 792 Query: 438 VDTRINKRKMEIEVMQL 454 + + ++ E +L Sbjct: 793 TERKR----LDDERERL 805 >gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense DCB-2] gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense DCB-2] Length = 896 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/578 (18%), Positives = 203/578 (35%), Gaps = 61/578 (10%) Query: 267 SSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + Y + + + + E Sbjct: 71 APFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVIIDITERKAAEIMTRENAEKF 130 Query: 323 PETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIE---------IAGGLS 367 E ++ F++ G + N L + I+ L+ Sbjct: 131 REIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTLA 190 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 LS N + ML I + H N L Sbjct: 191 NEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRML---------------- 234 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVS 482 I + + + + + + + + +D + + + G+++ N Sbjct: 235 ---LSIARDISNQKRIHKILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKAR 291 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L GY E+ + ++P + + + L + E I E+ + + Sbjct: 292 RLMGYH-EETFMFSAGPCIRPSSPQLTLDDVWQSLERTHSASFEGICTNLEGEDIPVEVN 350 Query: 543 IIIKKLPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 L S + DI+E K + + + AK+ AE + KS+FLA +SHE Sbjct: 351 CHTFPLNGSKVMLTLLRDITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEFLANMSHE 410 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ IIG + + E + I+ND+LD SKIE+GK+ Sbjct: 411 IRTPINGIIG----MIDLTLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKL 466 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714 + +L E + + I A K + + + + N+P D +KQ+ N+LSN Sbjct: 467 TVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSN 526 Query: 715 AIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 A+ FT G ++ ++ ++ V DTG+G+ + + F Q+ S + Sbjct: 527 ALKFTERG-EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRK 585 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL +++ +V+ G+ ++ S KG+ ++ Sbjct: 586 YGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 18/264 (6%) Query: 325 TVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 VD P + GN Y N ++L T V+ + G LS + N ++ Sbjct: 7 LVDNLPALLWSSDRAGNYDYVNQAWLEFTGLTFVE-VRGEGWLSCVHPEDSPGVMNVLEH 65 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +++ A +++ E ++ + E G+ + + + Sbjct: 66 SRRHKA-----PFEAEYRLRRYDGEYRHCLS-RGQPYDDPKGELAGYTGVIIDITERKAA 119 Query: 444 KRKMEIEVMQLCSILEATSDGIAII----NRE-GIILSTNRAVSKLFGYPVEDILRKPFT 498 + + I +D + I + + G I N +L G +I+ Sbjct: 120 EIMTRENAEKFREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSRE 179 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSL 556 V ++ ++ N + ++LS + L + T + K + + + L Sbjct: 180 VIKVKSPLTLANEFTQKLLSKN---YLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRMLLS 236 Query: 557 TMHDISEWKQEKNKLSHAKKIAEK 580 DIS K+ L + + Sbjct: 237 IARDISNQKRIHKILLASHNKYRQ 260 Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats. Identities = 44/393 (11%), Positives = 86/393 (21%), Gaps = 30/393 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W+ D G +++ + G ++ G D + L + Sbjct: 14 LLWSSDRAGNYDYVNQAWLEFTGLTFVEVRGEGWLSCVHPE--DSPGVMNVLEHSRRHKA 71 Query: 145 GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + + L+ P E +G+ G I + + +K Sbjct: 72 PFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVII--DITERKAAEIMTRENAEK 129 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 F + + + K D + + + + K PL Sbjct: 130 FREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTL 189 Query: 264 SEESS----------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + E + H K ++ L N + Sbjct: 190 ANEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRMLLSIARDISNQKRIHK 249 Query: 314 YFDEGENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 N + D FVY G L N L Y + AG Sbjct: 250 ILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKARRLMGYHEETFMFSAGPCI 309 Query: 368 TLLDAPKLSDNNAIKPVMLYRS---------DRTCIAASARLHTIQWNRENSLAMTFIPF 418 D+ + + + I HT N + Sbjct: 310 RPSSPQLTLDDVWQSLERTHSASFEGICTNLEGEDIPVEVNCHTFPLNGSKVMLTLLRDI 369 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + Q + + E + + Sbjct: 370 TERKQIEQERKRTEAEFQQAKEKAEAANRAKSE 402 >gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1065 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 128/806 (15%), Positives = 268/806 (33%), Gaps = 68/806 (8%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + S ++V D IP + D HG + +G ++ Sbjct: 131 TDISARKQSPEPSPTGLTSYVLDTIPD---LIFIKDMHGVYIGCNSAFASHLGRDRDEIT 187 Query: 115 GMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + D +LKR + + + +G + ++ P ++ Sbjct: 188 GKNDYQLYSAEMADFFREKDKQVLKRAASGSNEEWISYPDGR--EILLETLKTPYRDQHG 245 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 +G G G + +K+F + E G + I Sbjct: 246 NITGIVGIG--RDITGRKMAEKALEESEKRFRIVFENLPGGIFIHDLDGKILMANDTACK 303 Query: 234 LRMKNKVSSLT----EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + L + H + + L E S+ + N + Y + Y Sbjct: 304 NTGYSMQELLNMYIKDIDVHALNPEGRFEAWDLLREGQSISVESMHTRKNGSSYPTEVYL 363 Query: 290 GTLQNNSKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346 + ++K ++ + E E+ +KCPI + G + + N Sbjct: 364 NAMSLDAKPVIFAVAFDITVRKRMEKALQESESSFKMLAEKCPISIMRFDRHGRVNFVND 423 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + +D + ++ + P L + V + Sbjct: 424 WHIDKFAFNRLD--KDFFLNRSVHELPGLVNAGIDHEVAKIFK-GRTVEMDEVFFPEFAA 480 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ + I + + I + + E++ + Sbjct: 481 GGPG-WVSIRAVPVY-EKGVVAGGILIRENITQRKKADEALRISEQKYRQLFESSPVSLW 538 Query: 467 IIN------------REG----------------------IILSTNRAVSKLFGYPVEDI 492 ++ EG +L N+ LF + Sbjct: 539 ELDFSEVKKRLDALQAEGVQDLHSYFAGRQELIWEMADMVKVLDVNQQSLNLFRARTKRE 598 Query: 493 LRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLP 549 L T ++ + +L + +E+ + ++ + + Sbjct: 599 LMTGITSIFDKESQNKNFIQFLKVMACRGQGVVVERDHVTLDGQKLKTQVYWSVASGHEQ 658 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S + D ++ Q + +L AK+ A + KS FLA +SHEIRTP+ I+G ++ Sbjct: 659 DYSLVLACIVDNTDLLQTRQQLYQAKEQAVAANQAKSHFLATMSHEIRTPINGIMGLMQL 718 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +++ + EY + S + +++D+LD+S++E+GKM + E S + Sbjct: 719 MQDT----TQDREQQEYVDLALTSAQRLTRLLSDILDLSRVEAGKMTIQEEKFSPRDLAG 774 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 L ++ A ++ + + +P I+ D V+QI N++ NA+ ++ G + + Sbjct: 775 SVAELFKVTAKDRGVSLECILDPGLPGEIIGDPARVRQILFNLVGNAVKYSEHG-NVNLH 833 Query: 729 -----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + V+ V DTG+G+ ++ PF Q+ + Q + +G GLGL + + Sbjct: 834 MTPVPAGRNEDIRVLFIVSDTGIGIPEDRIKTLFDPFVQVEDYQTRKHQGAGLGLAIIRR 893 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + G I ST +GT + + P Sbjct: 894 LTQLMGGNISIDSTEGEGTAVYVALP 919 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 59/613 (9%), Positives = 173/613 (28%), Gaps = 73/613 (11%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG-KT 147 G + L + G + + D+ L++D + I L+ +Q + Sbjct: 38 PKGLAVSANHALSRMFGYDSPDEFTGTVKDIWSQLYVDSADRAEIISLVHKQGAVNDHEC 97 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +G+ + ++ A ++ + ++ F + S++ Sbjct: 98 RMRRRDGSIFWSSQNIRAD--QDQHGRLNHYQVF--ITDISARKQSPEPSPT--GLTSYV 151 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++ S R +++++ +Y + ++ + Sbjct: 152 LDTIPDLIFIKDMHGVYIGCNSAFASHLGRDRDEITGKNDYQLYSAEMADFFREKDKQVL 211 Query: 266 ESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGE 319 + + +E + + + ++ + + +E E Sbjct: 212 KRAASGSNEEWISYPDGREILLETLKTPYRDQHGNITGIVGIGRDITGRKMAEKALEESE 271 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + P F++ G + AN + T Y + + +D L+ Sbjct: 272 KRFRIVFENLPGGIFIHDLDGKILMANDTACKNTGYSMQELL---NMYIKDIDVHALNPE 328 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L R + I+ + + N + ++ + P + + Sbjct: 329 GRFEAWDLLR-EGQSISVES--MHTRKNGSSYPTEVYLNAMSLDAKPV---IFAVAFDIT 382 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDILRK 495 + ++ ++ + E I +R G + N F + L + Sbjct: 383 VRKRMEKALQESESSFKMLAEKCPISIMRFDRHGRVNFVNDWHIDKFAFNRLDKDFFLNR 442 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 L + ++H + +I + E + + I + Sbjct: 443 SV-HELPGLVNAGIDHEVAKIFKGRTVEMDE-VFFPEFAAGGPGWVSIRAVPVYEKGVVA 500 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 L +I++ K+ L +++ + +P++ Sbjct: 501 GGILIRENITQRKKADEALRISEQKYRQLFES-------------SPVS----------- 536 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV---S 669 L + + + G V DL +G+ L +E + + + Sbjct: 537 --LWELDFSEVKKRLDALQAEG------VQDLHSY---FAGRQELIWEMADMVKVLDVNQ 585 Query: 670 EAISLVQLYANEK 682 ++++L + + Sbjct: 586 QSLNLFRARTKRE 598 Score = 103 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 74/259 (28%), Gaps = 12/259 (4%) Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + P+ F+ G AN + + Y S D+ G + + + + Sbjct: 23 QDILMHAPVGIFISTPKGLAVSANHALSRMFGYDSPDEF--TGTVKDIWSQLYVDSADRA 80 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + L R+ + + + +Q + + Sbjct: 81 EIISLVHKQGAVNDHECRM---RRRDGSIFWSSQNIRADQDQHGRLNHYQVFITDISARK 137 Query: 442 INKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + E L S +L+ D I I + G+ + N A + G ++I K Sbjct: 138 QSP---EPSPTGLTSYVLDTIPDLIFIKDMHGVYIGCNSAFASHLGRDRDEITGKNDYQL 194 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558 ++L + E+ E LL + + Sbjct: 195 YSAEMADFFREKDKQVLKRAASGSNEEWISYPDGREILLETLKTPYRDQHGNITGIVGIG 254 Query: 559 HDISEWKQEKNKLSHAKKI 577 DI+ K + L ++K Sbjct: 255 RDITGRKMAEKALEESEKR 273 >gi|307307210|ref|ZP_07586947.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|306910265|gb|EFN40697.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1629 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 126/781 (16%), Positives = 271/781 (34%), Gaps = 62/781 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147 D G + ++ + G +IG CD+ ++ ++ + + Sbjct: 363 DLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKTVLNQIS 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 T G+ +V +LPIY + G + + L RL+++ Sbjct: 423 THQRQNGS--HVSTSTTSLPIYDEDSAIVGLSQ--TIRDITTQQEAERYILSLNARLEQE 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEK 258 + + + D +QQ + + + + H + +L Sbjct: 479 VTKRTNALQQALLENQTLLDTINQQLLYSATDPNGVILEVNDNFCHVSGYSRKQLLGETH 538 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYT---------------KKQYFGTLQNNSKESFEYL 303 L + E + + + I G + N + ++ Sbjct: 539 AILNSGEHDAAFWRTMWTQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNIERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + G + N L Y +V Sbjct: 599 ALRTDITERKLAQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLLGYAAV 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--------TCIAASARLHTIQWNREN 409 D I ++ L + + + + + R T + Sbjct: 659 DMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTS 718 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ + E + GI + ++ + L E GI + Sbjct: 719 QCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLGIWSWD 778 Query: 470 REGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 L N + ++ +P + + + + + + + L + + Sbjct: 779 LRDNSLEWNERMFAIYDHPLSLQDKGLTYEHWRMRIHSDDIDFAEAKLKAAIEEKDQYDP 838 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + + I++ DI+E +Q + L AK A+ ++ Sbjct: 839 IFRVVRTDGTIRYVQAAAQIERDVTGQVTKVIGINLDITEQRQLEETLREAKHEADAANA 898 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ A++G +++++ + +Y + + +L ++ND Sbjct: 899 AKSAFLANMSHEIRTPMNAVLGMLQLMQHTSMSV----QQQDYVSKTQTAAKSLLGLLND 954 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SKI++GK+ L P S++ + + ++ K + + +P +LAD Sbjct: 955 ILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDPALPAWLLADQL 1014 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758 ++QI +N+ NA+ FT G Q+ ++ +E V + + DTG+G++ ++E+ Sbjct: 1015 RLQQILVNLAGNALKFTRHG-QVTVAMECLRHEVNTVTVQISISDTGIGISEEQIERIFT 1073 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816 F Q +S R GTGLGL ++K +V+ G+ + S G+ + F + + Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWFDVTFCVMEVEAT 1133 Query: 817 H 817 H Sbjct: 1134 H 1134 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 56/429 (13%), Positives = 120/429 (27%), Gaps = 43/429 (10%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 ++EF G RGFG + RV N A K + + EKY I + Sbjct: 93 RDVDQEFPGARGFGFIR--RVPNSDEAAFLTRAKNDDWPDFNIRQLTPHSGEKYVIEYIE 150 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P R + + AH+ + + + + + Sbjct: 151 ---PIDRNRAAIGLDVASEAHRKAAADAAMLSGEVRLSAPITLVQATRKPLQSFLILQPI 207 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + T+ + + + + +T E + + N Sbjct: 208 YRTI-------SVPKTPQERLAAGYGWSYAPLVTNEVLTGLAL-------------NQKM 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML----YRSDRTCIAASARLHTIQ 404 L + E + + + IA A + ++ Sbjct: 248 TKLL-LSDITQTERPISFFETHPDDASPLSAYSHTLTKEIFGRKWQVEVIAYPAFIQSLH 306 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 L + + + R + ++E S+LE + D Sbjct: 307 ------LNQPSLVLLSGSLLSLLLAAFIAIWSISLQRKQQVQLEQARR--ASMLEHSLDA 358 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I + G I S N+ ++FGY D++ + + + L + Sbjct: 359 IISYDLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKT-V 417 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L +I+ + +S + S T+ DI+ ++ + + E+ Sbjct: 418 LNQISTHQRQNGSHVSTSTTSLPIYDEDSAIVGLSQTIRDITTQQEAERYILSLNARLEQ 477 Query: 581 ESSHKSDFL 589 E + +++ L Sbjct: 478 EVTKRTNAL 486 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 37/391 (9%), Positives = 102/391 (26%), Gaps = 33/391 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 D +G + E+++ G +++G ++ H + +K +W+G+ Sbjct: 509 TDPNGVILEVNDNFCHVSGYSRKQLLGETHAILNSGEHDAAFWRTMWTQIKSGLSWHGEI 568 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + D P+++ N R + + +L +++ Sbjct: 569 CN--RDRHQMLKWFDTVIGPVFNENGNIE--RFVALRTDITERKLAQIEKNKLGSLLTNV 624 Query: 208 HEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + S + +K + + + + T H + + L + Sbjct: 625 LDAASEMSIIATDKKGVITIFNRGAEQLLGYAAVDMIGLSTPAPLHLPEEVAARSAELSS 684 Query: 264 SEESSLPEQEDF----HTINLNQYT------------KKQYFGTLQNNSKESFEYLSHRN 307 + + F T+ T + +N E YL Sbjct: 685 EYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTSQCQVSLSVTAMLDNVGEIIGYLGIAI 744 Query: 308 HPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362 S + N + + + + + N N + + ++ Sbjct: 745 DISQVLQQQKALITASNHLSKAAEVAKLGIWSWDLRDNSLEWNERMFAIYDHPLS--LQD 802 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G SD+ L + ++ + + + + Sbjct: 803 KGLTYEHWRMRIHSDDIDFAEAKLKAAIEEKDQYDPIFRVVRTDG-TIRYVQAAAQIERD 861 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + GI + + R + + + Sbjct: 862 VTGQVTKVIGINLDITEQRQLEETLREAKHE 892 >gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1090 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 132/798 (16%), Positives = 269/798 (33%), Gaps = 96/798 (12%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152 IS + +G ++ + ++ + + L+ Q Y Sbjct: 58 LFISPRWKEMLGYQDQELPNRFDTWKQLLHPQDVERVMEAVQNHLEGQTNHYQIEFRLRC 117 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---E 209 + N I +++ + R G + + L + L L + Sbjct: 118 QDGNYK-WILSKGKALWNSAGK--AIRMVGSHSDISDRKEEQILLRSLIDSIPDLIFCKD 174 Query: 210 IKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + ++D + EK +EE Sbjct: 175 AQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHRNEEWI 234 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++ + G L S + + + + ++L + Sbjct: 235 TYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLSSIARQ 294 Query: 329 C-------PIPFFVYSHGNLFYANPSF-------LLLTKYKSVDDIEIAGGLSTLLDAPK 374 + F + + G+ + + L L + Sbjct: 295 LIDQDFNTAVNFTLEALGHFTDGDRGYIIRYSPQQRLWNMTHEWCNYQVPST---LQQSQ 351 Query: 375 LSDNNAIKPVMLYRSDRTCI--------AASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + I A + + + + +P A Q Sbjct: 352 NIPVEYLPWFSRQLLNGQPICVNSLDDLPPQAIAERVVFKNSLNPTLVVVPMVTAGQTVG 411 Query: 427 NMPQNGIEPED-------------------VDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + IL+ ++ I Sbjct: 412 YLGFDANSSKIWTQEEVNLLKLVGEFIAIAQARSQAEDDRKESEARFAGILDNANEAIIS 471 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524 I+ + I N A K FGY ++L +PF + Y+ + L + Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + G ++ + I K+ ++ + DI+E +Q + L AK+ A+ + Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAAN 591 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHE+RTPL AI+GF++V++ R NP + + + I RSG +L+++N Sbjct: 592 RAKSEFLASMSHELRTPLNAILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELIN 648 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+L++SKIE+G+ H L + +++ L A EK + + +P+ + D Sbjct: 649 DILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDE 708 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT----------------------------- 732 ++Q+ +N+L NAI FT GG + + Sbjct: 709 GKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIA 767 Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +E++++ V D+G G+ E+++ FGQ +Q + EGTGLGLP+++ V G Sbjct: 768 DSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQ-EGTGLGLPISRKFVQLMGG 826 Query: 791 KFYIFSTPAKGTLIEIIF 808 + S +G+L Sbjct: 827 NISVSSILGQGSLFAFSI 844 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 83/316 (26%), Gaps = 19/316 (6%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYA 344 +Q LQ E + + + ++ + Sbjct: 3 EQIIKQLQQEIATLKAVQQATLKIQQE--LQESQERWQLIIQATNEGIWDWNLRTNELFI 60 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 +P + + Y+ + + L P+ D + + + ++ Sbjct: 61 SPRWKEMLGYQDQE-LPNRFDTWKQLLHPQ--DVERVMEAVQNHLEGQTNHYQIE-FRLR 116 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 N + N + + G + D + E + L S++++ D Sbjct: 117 CQDGNYKWILSKGKALWNSAGKAIRMVGSHSDISDRK-------EEQILLRSLIDSIPDL 169 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I + +G+ N A G P ++I+ K + Sbjct: 170 IFCKDAQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHR 229 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E+ +LL DI++ KQ++N + K S Sbjct: 230 NEEWITYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLS 289 Query: 583 SHKSDFLARVSHEIRT 598 S + + + T Sbjct: 290 SIARQLIDQ---DFNT 302 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 40/365 (10%), Positives = 92/365 (25%), Gaps = 35/365 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKR-QNTW 143 ID + + KT G A ++G + D + L+ + Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531 Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLD 201 + +G+ + ++ + + G + F IV K+ Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKI-------QLKGRKLFTAIVRDITERQQAEEALKQAK 584 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + K + + + ++ + +L + ++ L Sbjct: 585 EAADAANRAKSEFLASMSHELRT-PLNAILGFTQVMRRDRTLNPEHQQNLSIISRSGEHL 643 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + + I + T L L + E Sbjct: 644 L----ELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPE 699 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 P+ ++ G L + L GG++ + + S Sbjct: 700 VPQYLET--------DEGKLRQV---LINLLGNAIK--FTEEGGVTLRVKSEVRSRKGGF 746 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R+ A L I + E + + PE + Q +T Sbjct: 747 RESATLRTIDLEKPA---LTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETG 803 Query: 442 INKRK 446 ++ Sbjct: 804 RQAQE 808 >gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium autotrophicum HRM2] Length = 1272 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 114/541 (21%), Positives = 215/541 (39%), Gaps = 22/541 (4%) Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + + Q E+L + E E + FV Sbjct: 204 AEQIARVQAEDAERTQKELTRYKEHLENLVEDRTE-RLRESEEYNHLILQSVAEGIFVTD 262 Query: 338 HGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 L YAN + + Y+ + ++ S + + + + + Sbjct: 263 TEGLCTYANEAAQKMLGYEIKELVDENIHDLFHHSNDDGSPHLREDCPIYWAHTKGITSF 322 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + ++ ++ + + + + + + L S Sbjct: 323 RRDEVFWRKDGSFFYTSYTSVPQRKDKT--IIGSVVVFRDISARKKVEDALRESEYHLKS 380 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL T++G +N I+S N + K+ ED+L + FL++ +++N L + Sbjct: 381 ILMTTNEGFLWVNNGAHIVSVNDTMCKISSRAREDLLGRALFEFLDEENIAILNEQL-RL 439 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLS 572 + + + + L + + DI+ K+ + +L Sbjct: 440 RNTGQTSVY--EIALNRPDGSKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKMEEELI 497 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AE + KSDFLA +SHEIRTP+ A++G + + P + +Y + I Sbjct: 498 VARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDLTP----KQRDYLHKIQI 553 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-RILIRTSFA 691 S N +L ++ND+LD SKIE+GKM + +LDE + +++ + EK I + Sbjct: 554 SANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLREKEGIEVLFDTG 613 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746 ++P +++ D + QI +N+ +N+I FT SG +I++ST S + VRDTG+ Sbjct: 614 ADVPRQLVGDPLRLSQILVNLANNSIKFTESG-EIVVSTKVVSQGNHVIVLQFSVRDTGI 672 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+T + + F Q S R G+GLGL + + +V GK ++ S KG+ Sbjct: 673 GLTEEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGSTFYF 732 Query: 807 I 807 Sbjct: 733 T 733 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 19/257 (7%), Positives = 71/257 (27%), Gaps = 15/257 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-------K 138 + D G +E K +G +++ + D+ + D + H+ + K Sbjct: 258 IFVTDTEGLCTYANEAAQKMLGYEIKELVDENIHDLFHHSNDDGSPHLREDCPIYWAHTK 317 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 ++ W +G+ Y ++P +++ G + + Sbjct: 318 GITSFRRDEVFWRKDGSFFYTSYT--SVPQR-KDKTIIG--SVVVFRDISARKKVEDALR 372 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK 255 + + I S ++ + + ++++ Sbjct: 373 ESEYHLKSILMTTNEGFLWVNNGAHIVSVNDTMCKISSRAREDLLGRALFEFLDEENIAI 432 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + L + + + + + ++ + + L + + + + + Sbjct: 433 LNEQLRLRNTGQTSVYEIALNRPDGSKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKM 492 Query: 316 DEGENLTPETVDKCPIP 332 +E + + + Sbjct: 493 EEELIVARDKAEAATRA 509 >gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 632 Score = 373 bits (957), Expect = e-100, Method: Composition-based stats. Identities = 112/551 (20%), Positives = 211/551 (38%), Gaps = 28/551 (5%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF 334 + + + + + Y+ + + + + + P+ Sbjct: 95 DGTYFYVQIRISPIYDKKGNIIAYMGSQRDITNLKQTEKRLQQEREFLEKLIQTSPVAIH 154 Query: 335 VYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 N+ N S + + + I P + + N + + L Sbjct: 155 GTDTNSNVIIWNESSEKIFGWSREEVIGEFL--------PTVPEENIDEHLSLRNRVLAG 206 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + + L + +Q + + + + K++ Q Sbjct: 207 ETITGYEVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMANMEDITEKKQYEYKLKEAFNQ 266 Query: 454 LCSILEATSDGIA--IINREGIIL--STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPS 507 L SI + ++ G + + V++L P I K F +++ + Sbjct: 267 LESIHFNLPISVWSATVDETGDFVDTYISEGVNELLALPPNTIGNDFKAFLNYVKPHYLP 326 Query: 508 VMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISE 563 + E I + + E + + + + + + DI++ Sbjct: 327 EIKDKFEEGIKNPGKVVSFEYEVINGSGVTRWF---LSSGRAQEENGTVKVYGSTIDITK 383 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + L +AK +AE + K++FLA VSHE+RTPL AIIGFS+++ + G L + Sbjct: 384 NKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNLNDKEL 443 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y + I +SGN +L+++N +LDISK+++GK +L E V E + + +K Sbjct: 444 K-YVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLIAKKN 502 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + I AD + QI N+L NAI FTP G I I+ + + V+D Sbjct: 503 LSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNF-QVSVKD 561 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + F Q+ +S + EGTGLGL L K ++ + G ++ S KG+ Sbjct: 562 TGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGKGST 621 Query: 804 IEIIFPLYDTS 814 + P +S Sbjct: 622 FTFVIPQNQSS 632 Score = 105 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 77/254 (30%), Gaps = 15/254 (5%) Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 E V + V + Y N + L + E G T + + Sbjct: 17 SEIVKQSVDSIVVTDTNSAIIYMNKAAEHLFGWS----FEELKGRKTDVFNAEQMSEEIQ 72 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 K + + + ++ + G + + + + Sbjct: 73 KEIYDTVASGKIYNGELLNK---KKDGTYFYVQIRISPIYDKKGNIIAYMGSQRDITNLK 129 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++++ E L +++ + I + ++ N + K+FG+ E+++ + F + Sbjct: 130 QTEKRLQQEREFLEKLIQTSPVAIHGTDTNSNVIIWNESSEKIFGWSREEVIGE-FLPTV 188 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557 + +L+ + K+ L + + + Sbjct: 189 PEENIDEHLSLRNRVLAGETITGY--EVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMAN 246 Query: 558 MHDISEWKQEKNKL 571 M DI+E KQ + KL Sbjct: 247 MEDITEKKQYEYKL 260 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 25/368 (6%), Positives = 93/368 (25%), Gaps = 15/368 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146 D + + +++ G ++ G + DV ++ + + I D + + G+ Sbjct: 30 TDTNSAIIYMNKAAEHLFGWSFEELKGRK-TDVFNAEQMSEEIQKEIYDTVASGKIYNGE 88 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND---PRALGKRLDKK 203 +GT YV I ++ PIY + + G + +K Sbjct: 89 LLNKKKDGTYFYVQIRIS--PIYDKKGNIIAYMGSQ--RDITNLKQTEKRLQQEREFLEK 144 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + ++ + Sbjct: 145 LIQTSPVAIHGTDTNSNVIIWNESSEKIFGWSREEVIGEFLPTVPEENIDEHLSLRNRVL 204 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E+ + + + + + F +++ + ++ Sbjct: 205 AGETITGYEVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMANMEDITEKKQYEYKLKEAF 264 Query: 324 ETVD----KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 ++ PI + + +++ + + + + Sbjct: 265 NQLESIHFNLPISVWSATVDETGDFVDTYISE-GVNELLALPPNTIGNDFKAFLNYVKPH 323 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + + + + F+ +A + + G + Sbjct: 324 YLPEIKDKFEEGIKNPGKVVSFEYEVINGSGVTRWFLSSGRAQEENGTVKVYGSTIDITK 383 Query: 440 TRINKRKM 447 + ++ + Sbjct: 384 NKNAEKSL 391 >gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium autotrophicum HRM2] gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium autotrophicum HRM2] Length = 1316 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 132/786 (16%), Positives = 271/786 (34%), Gaps = 50/786 (6%) Query: 52 SNFTDQNQESVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 F D + + SE F F+ I F + +D G + + +E + + Sbjct: 245 ETFIDISDRKSAEERLKKSETNFRSFFNSIDN---FLFVLDVKGNILKANETAIRRLEYS 301 Query: 110 AFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167 ++ G+ + V +G++++ + I + Y+ ++ P Sbjct: 302 EEELNGLNVAMV-HPEDRRAEAKKIVGEMIEGSADFCPIPV---ISKSGRYIQVETRVHP 357 Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 +R F + + L + + L I + + + F + Sbjct: 358 GSWDDRPAL----FCVTKDVTKIRETEELFSKAFHASASLMGISEIDGGLFIDVNRAFVE 413 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 S K S + + +D + + ++ + Sbjct: 414 TSGYTRNEAIGKTSVELGLFPNPEDRNRVASMVKESGFIKNMEITIRTKIGDKKFGLFSA 473 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346 + N + S E + ++ + + + Y + Sbjct: 474 TRIDVNGNPCLLTTLTDITDRKSAEDALRENKERLDLALESASMAPWHWDTMEKKLYLDS 533 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 LL + G L +DA D ++ + R + W Sbjct: 534 KACLLLGLDTE---RSNGTLQDFIDAVHPDDRARLRQARDRTTARGTFYE--HEFRVVWP 588 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ +T N +G+ + +I ++ E E +L ++++ T+ G Sbjct: 589 DGSTHYITAHGKPVHNSSGVMTKIHGLIGDISKRKIAQQNFEDERQRLANVIKGTNTGTW 648 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQT 524 N + N+ +++ GY +E++ + + P + +L Sbjct: 649 EWNVQTGETVYNKRWAEILGYTLEELEPADVSTWNRLTHPQDLEKSDEMLLKHFTGEIPY 708 Query: 525 LEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLS------- 572 + K + + + T DI++ KQ + +L Sbjct: 709 YDIQCRMRHKRGHWVWVHDRGQVMTWTADGKPLMMFGTHMDINQAKQVEQELMATNFQLE 768 Query: 573 -------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 AE + K +FLA +SHEIRTP+ IIG + ++ + + Sbjct: 769 DAMARANQMATEAELANLAKGEFLANMSHEIRTPMNGIIGMTGLLMDTQL----TDEQRR 824 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA + SG +L I+N++LD SKIE+GK++L +L + + + A+E+ I Sbjct: 825 YARIVQASGESLLRIINEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIE 884 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRV 741 + ++P + D + QI N+ NA+ FT +G I + H ++++VI V Sbjct: 885 FICTLDPDVPLGLRGDSGRLGQILTNLAGNAVKFTSTGKVSIKVKVEHETDKDVILYFSV 944 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ +L F Q S GTGLGL ++K + + G+ + S +G Sbjct: 945 KDTGIGIQREKLGMIFNKFTQADESTTREFGGTGLGLAISKQLTEMMGGRMGVESIQGEG 1004 Query: 802 TLIEII 807 + Sbjct: 1005 SNFWFT 1010 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 69/506 (13%), Positives = 145/506 (28%), Gaps = 34/506 (6%) Query: 89 IDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID G + E +E G ++ M++ D++ + + +I L Y ++ Sbjct: 37 IDPNDGAIAEANEAACTFYGYSVEQIRQMKISDINTLSPDEVAKNIQAAL-SGQHQYFES 95 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + +++ PI F G + + I+H + Sbjct: 96 RHRLADG--QIRDVQISSSPI-----PFKGQKWLYYIIHDITARKNAEKKLHENKSFQRV 148 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSE 265 L E + +K Q + + + H P+ Sbjct: 149 LLEDINAGVVIVDKKTHTIEQINSQGAKLFGASQDEIIGHVCHNFLCPYDRGNCPITDKG 208 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + L K ++ + S + E Sbjct: 209 MDLDRADRILLKADGTLLPILKSVKSIKLDGKEKLLETFIDISDRKSAEERLKKSETNFR 268 Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + FV GN+ AN + + +Y + GL+ + P+ A K Sbjct: 269 SFFNSIDNFLFVLDVKGNILKANETAIRRLEYSEEEL----NGLNVAMVHPEDRRAEAKK 324 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 V I SA I ++ + + + + + Sbjct: 325 IV------GEMIEGSADFCPIPVISKSGRYIQVETRVHPGSWDDRPALFCVTKDVT---- 374 Query: 443 NKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 K+ A++ GI+ I+ G+ + NRA + GY + + K Sbjct: 375 ---KIRETEELFSKAFHASASLMGISEIDG-GLFIDVNRAFVETSGYTRNEAIGKTSVEL 430 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 P N + + + +E ++K + + C T+ D Sbjct: 431 GLFPNPEDRNRVASMVKESGFIKNMEITIRTKIGDKKFGLFSATRIDVNGNPCLLTTLTD 490 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKS 586 I++ K ++ L K+ + S Sbjct: 491 ITDRKSAEDALRENKERLDLALESAS 516 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 82/284 (28%), Gaps = 22/284 (7%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 E ++ + + G + AN + Y SV+ I Sbjct: 12 QRKKLQESQDRYRAMFENTMCIKMLIDPNDGAIAEANEAACTFYGY-SVEQIRQMKISDI 70 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 +P N + +R + + + + + Sbjct: 71 NTLSPDEVAKNIQAALS-----GQHQYFESRH---RLADGQIRDVQISSSPIPFKGQKWL 122 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487 I + + ++K+ +LE + G+ I++++ I N +KLFG Sbjct: 123 YY--IIHDITARKNAEKKLHENKSFQRVLLEDINAGVVIVDKKTHTIEQINSQGAKLFGA 180 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIII 545 ++I+ FL ++ + + LL + + Sbjct: 181 SQDEIIGHVCHNFLCPYDRGNCP------ITDKGMDLDRADRILLKADGTLLPILKSVKS 234 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 KL T DIS+ K + +L ++ + +FL Sbjct: 235 IKLDGKEKLLETFIDISDRKSAEERLKKSETNFRSFFNSIDNFL 278 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 3/136 (2%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++K++ + ++ E T +I+ +G I N A +GY VE I + + Sbjct: 10 ALQRKKLQESQDRYRAMFENTMCIKMLIDPNDGAIAEANEAACTFYGYSVEQIRQMKISD 69 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + +P + + LS Q E + + + + + +H Sbjct: 70 -INTLSPDEVAKNIQAALS-GQHQYFESRHRLADGQIRDVQISSSPIPFKGQKWLYYIIH 127 Query: 560 DISEWKQEKNKLSHAK 575 DI+ K + KL K Sbjct: 128 DITARKNAEKKLHENK 143 >gi|218441451|ref|YP_002379780.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174179|gb|ACK72912.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1060 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 116/821 (14%), Positives = 256/821 (31%), Gaps = 106/821 (12%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHI 127 +SE F + + G + +I+ + G ++ + + Sbjct: 276 ESEERFRQAIFEAPLPIIIHA-EDGEILQINWAWSEISGYQPEQIPTLSAWTEKVYGENH 334 Query: 128 DPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 L Q G+ TL +G L A L R+ + Sbjct: 335 QVIRAYIRQLFQLNQRVAEGEFTLTNRQGKTLIWDFYSAPLKTLFDGRKVR----ITMAL 390 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS 242 ++++S L E+ + + L + + + Sbjct: 391 DVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQKWCQITGLTPEQALGT 450 Query: 243 LTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 H +D ++ S ++ + F + E Sbjct: 451 GWISSLHPEDRQRVITQWNYCLSHQTLFSSEYRFQDLQGEITWVVGQAIAETTPKGEIIG 510 Query: 302 YLSHRNHPSLSAYFDEGENLTPE---------------------------------TVDK 328 Y+ + + ++ + ++ Sbjct: 511 YIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKDSNEKLQQELAEKQKTQIILAEQ 570 Query: 329 CPIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + G + + N + + + + P+ Sbjct: 571 AQLLDLAHDVIMSRDLKGMILFWNQGAEKVYGFSKTEALGHNSHALLKTQFPEPIKTIFT 630 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + I + + + +Q + I + + Sbjct: 631 RLFADNYWEGELI--------QHKRDGQKIIVASRWVLQRDQRGKPSKILEINNDITARK 682 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++ + S+ E++ GI + + +G IL TN ++ G +D+L + + F+ Sbjct: 683 QAEEALQQNEAKFRSLCESSPIGIFLTDTQGQILYTNPRYLEIAGANAKDVLGEGWKQFI 742 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSS--CYSLT 557 + + L K + ++ + T Sbjct: 743 HPEDHETIISDWSANLGQQQNSFYP-EIRFHHKNGPIRYGNIYTSAIFTENGQLTGFVGT 801 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E +Q + K DF++ VSHE+RTPLTAI G ++ + Sbjct: 802 VEDITERRQIE--------------QMKKDFISVVSHELRTPLTAIHGSLGLLAAGVYDN 847 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + + ++ +VND+LD+ ++ESG + L + + +A+ +++ Sbjct: 848 KP-EKGKKMIHIAATQTDRLVRLVNDILDLGRLESGNLQLVMKSCQTATLMQQAVEVMRP 906 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---------- 727 A E ++ + ++ + AD ++ Q N+LSNAI F+P I++ Sbjct: 907 KAEENQVTLSV-IPLDV-FVWADFDAIIQTLTNLLSNAIKFSPPNSTIVVKAELMSIDDN 964 Query: 728 ---------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 S + V+ +V+D G G+ +L + F QI S GTGLGL Sbjct: 965 IKVWQKKTPSLALLPSPYVLFQVQDQGRGIPVDKLSLIFEKFQQIDTSDSREKGGTGLGL 1024 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + + +++ + G+ + S KG++ P+ P DC Sbjct: 1025 AICRTIIEQHKGQIWAESVLGKGSIFYFTLPV-----PPDC 1060 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 41/363 (11%), Positives = 101/363 (27%), Gaps = 31/363 (8%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362 L E E + + + P+P ++ G + N ++ ++ Y+ + Sbjct: 263 EIEERKQLEHLLRESEERFRQAIFEAPLPIIIHAEDGEILQINWAWSEISGYQPEQIPTL 322 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + L++ ++ L Q +L F Sbjct: 323 SAWTEKVYGE--NHQVIRAYIRQLFQLNQRVAEGEFTLTNRQ---GKTLIWDFYSAPLKT 377 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 F + + + + + + + ++ E GI + +G + N+ Sbjct: 378 LFDGRKVRITMALDVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQKWC 437 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++ G E L + L + LS + + ++ + Sbjct: 438 QITGLTPEQALGTGWISSLHPEDRQRVITQWNYCLSH--QTLFSSEYRFQDLQGEITWVV 495 Query: 543 ----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 Y T+ DI+ K + LS AK E ++ L S+E Sbjct: 496 GQAIAETTPKGEIIGYIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKD-SNE--- 551 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR--SGNLVLDIV-------NDLLDISK 649 + + ++ + + + + ++ + SK Sbjct: 552 ------KLQQELAEKQKTQIILAEQAQLLDLAHDVIMSRDLKGMILFWNQGAEKVYGFSK 605 Query: 650 IES 652 E+ Sbjct: 606 TEA 608 >gi|188581744|ref|YP_001925189.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179345242|gb|ACB80654.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 853 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 170/783 (21%), Positives = 311/783 (39%), Gaps = 75/783 (9%) Query: 34 FETEKSKKENPC--HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 FE +K E P + + S +++ R W DA Sbjct: 137 FEAGPAKAEPPSQRASQPDAQPEASTPAPAPSPAMEMEAGPDQRETTADLPARLIWRSDA 196 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G L ++S P A ++G ++ I+ + + L + T+ L Sbjct: 197 EGVLTQVSRTHPDL----AEALLGQSWAMLAIDGVIEGA-ALTEALSARRTFRSVPLL-- 249 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + G ++++ P +FSGF GF I+ + +++ Sbjct: 250 VRGRAYEHALEISGAPAGRATEDFSGFGGFAIL--------GERSPRAIEE--------- 292 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + E D P +++ L +E ++ E Sbjct: 293 DAAAETESGGSDAPRDAEPVGGPDVED---------------------GLSVNEHAAFRE 331 Query: 272 QEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + + +++ S + E ++ P Sbjct: 332 VARILGLRFAPDLSAEAVEAGSADSATVSSVTPFPTPPGRIGESEARARAALTELLESLP 391 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + VY + +A+ +FL LT Y + + A GL+ L + PV +S+ Sbjct: 392 LGVLVYRGSEILFASRAFLDLTGYPDLSALREA-GLAHLFRGLPPGEREIAGPVPFAQSE 450 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 +A + W + + ++ V + + E Sbjct: 451 GGTVALLVDRAGLVWEGAPA---------ELCLARAAPAAAALQLPAVPPNAARSRAEK- 500 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +LE+ +G+ ++ EG ++ N + ++L ++++ F + + Sbjct: 501 ------VLESLEEGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPESLPALE 554 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEK 568 +T+ G T +LR+ I +L + Y ++ +I + + Sbjct: 555 TAVTDSRRSGAS-----EIHGVTPRTGAAALRLRIARLLGEDAPGYCASLREIRDDEPAL 609 Query: 569 NKL--SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ +E E+ K++ LARVS EIR L AI+ +E++ + RF R Y Sbjct: 610 PAAGEPARREASEAEAEWKANALARVSREIRPSLNAILSLTEMMLSDRFDRADAERLEAY 669 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + SG + +++DL D+++I++G+ L F ++L+E VS I+ Q A RI++ Sbjct: 670 LREVRLSGGRIAGLIDDLRDLAEIQAGRGKLTFAELALNELVSSCIAAQQAQAARDRIVL 729 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 RTS A ++P + AD+RS++Q L +L NAI T +GGQ+I+STT + LRVRDTG Sbjct: 730 RTSLAPDLPAMRADMRSIRQATLTVLGNAIRVTEAGGQVIVSTTRAERGGIALRVRDTGT 789 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GMT EL A++PF + + GE G GL L KA+V+AN G+F I S +GTL+E+ Sbjct: 790 GMTEDELMGALEPF-RADIAPAAEGEERGFGLTLTKALVEANRGRFRITSRKDEGTLVEM 848 Query: 807 IFP 809 +FP Sbjct: 849 LFP 851 >gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM 17132] Length = 1076 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 144/801 (17%), Positives = 273/801 (34%), Gaps = 87/801 (10%) Query: 72 NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131 FV + + F ++ G ++ KT+G ++ G ++ D + Sbjct: 16 EDFVENTSE--INFI--LNQTGEFIFVNSAFVKTLGYQKEEVRGKKITDYLHPQFKEEII 71 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVD 190 L+ + T + L + L YS N +R I+ + Sbjct: 72 KGILGLQLGEHLHDTTLVLRN---KLKKRVYLLGDVHYSEINHGLRAYRF--ILRDITIR 126 Query: 191 NDPRALG-------------KRLDKKFSHLH-----EIKKGHSSVEKEKYDIFSQQSPP- 231 A + L+ + +H I + V Y S P Sbjct: 127 RRAEAAQNLYFAIAQSNLNTRSLEDFLAQVHLNLKKNIYANNFFVAVFDYKDSSINFPYH 186 Query: 232 ----------------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 + ++ + ++ ++ + + L ES LP + Sbjct: 187 VDEFFDTGQNYLKRRLGNGLIEYSLLQKKPLVLNRQELEELIEREKLFIYESILPAVQIL 246 Query: 276 HTINLNQYTKKQYFGTLQNNSK------------ESFEYLSHRNHPSLSAYFDEGENLTP 323 + +N+ ++ S + A + Sbjct: 247 VPLKVNEEVVGVIGIKSYSDENKFSSNDLELLQFVSGQIAMTMERKRAEADLELQTARLK 306 Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK-----LSD 377 D + + L N ++ + + ++T ++ D Sbjct: 307 ALFDSSSHLLWTVNTRRQLSSMNRNYYNIV----YSQLGEEPKINTSIERYGWKLFNPDD 362 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 I+ LH Q N + + + E +GI Sbjct: 363 KPMIREKYNLAFQGKPQYFE--LHWGQKNGGPDWYEFHLNPIISGENGEVEEVSGIARNI 420 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ + +I+E+ D + G I + +V K GY E+++ + Sbjct: 421 TENKKALLDLQKSENKFRNIIESFIDIYYRSDLAGNITMISPSVYKHTGYREEEVIHQKV 480 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 F + + +L K+ + + I+ + Sbjct: 481 DQFF--EDVVDSSKNIKTLLKSGN--ITNYEVRVKRKDGSIRQFMLNIRMIKNEKGTPIE 536 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E + ++L AK+ AE K FLA +SHEIRTP+ IIG +V+ Sbjct: 537 VEGVARDVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNET 596 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + EY N I S +L I+ND+LD+SK+E+G+MN+ +P L E + ++ Sbjct: 597 EL----DKSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVA 652 Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L + A E L++ + + P I+ D + QI N+ SNAI FT G +II Sbjct: 653 LFKQKAAETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFT-QNGNVIIRIQWE 711 Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +E + V DTG+G++ +K F Q+ S + GTGLGL ++K +V+ Sbjct: 712 GQDEKTQFLRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIM 771 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G+ + S +G++ P Sbjct: 772 GGEIGLTSKLGEGSVFWFTLP 792 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 3/142 (2%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +E TS+ I+N+ G + N A K GY E++ K T +L + + Sbjct: 15 LEDFVENTSEINFILNQTGEFIFVNSAFVKTLGYQKEEVRGKKITDYLHPQFKEEIIKGI 74 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEK--NK 570 + + + K+ L + ++ Y + DI+ ++ + Sbjct: 75 LGLQLGEHLHDTTLVLRNKLKKRVYLLGDVHYSEINHGLRAYRFILRDITIRRRAEAAQN 134 Query: 571 LSHAKKIAEKESSHKSDFLARV 592 L A + + DFLA+V Sbjct: 135 LYFAIAQSNLNTRSLEDFLAQV 156 >gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18] Length = 571 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKRLE--------------QMRKDFLANVSHELKTPITS 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ E Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMET 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPGRLKQIFINLINNAIVYTPA 478 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28] Length = 571 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKRLE--------------QMRKDFLANVSHELKTPITS 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ E Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMET 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPGRLKQIFINLINNAIVYTPA 478 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1547 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 123/764 (16%), Positives = 246/764 (32%), Gaps = 55/764 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 F + D + S+ L + +MIG +V N + + Sbjct: 323 FIYYKDINSRFIFCSQTLADITNHAHWREMIGKHDFEVFPHDTATIYNEEEKPVFNEGKP 382 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T + P++ ++ SG FGI + Sbjct: 383 ILNRVNPFYKETGETGYVQTNKWPVFDDKQKVSGI--FGISRDITEHKKAVEDLENERNL 440 Query: 204 FSHLH-------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 F+ +G +V+ ++ P + + + + Sbjct: 441 FAAGPVFTMEWSPEMQGRWTVKFASSNVEQILGYSPEEMQHSNFWYTEIIHPDDVEGIVN 500 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 E + + S T + +++ S+ S + Sbjct: 501 ELRHNIANYIDSFETSYRLRTKAGYYLWTYDFTLLVRDEEGALTGIRSYMYDQSARKQAE 560 Query: 317 EGENLTPETVD--------KCPIP----FFVYSHG--NLFYANPSFLLLTKYKSVDDIEI 362 E + E ++ P+ G + + FL LT Sbjct: 561 EALRIAEERLEKTAYDLTENIPVGTYTMVQPPEGGMARFAFMSSQFLELTGLT-----RE 615 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L + ++ V L + + P A Sbjct: 616 KAASDPLKAFACVHPDDFDAWVALNAKAFAEKTPFFGETRVVAHGEVRWVTAESKPRTLA 675 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILST 477 + G+ + D + + + + + ++ S G+ + + Sbjct: 676 DGT---TVWEGVLADITDRKRAEEALSETLGRFNDLVVYMSVGVYVFWIRADGRQEFEYV 732 Query: 478 NRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + + ED+L + L + + + ++ + + E Sbjct: 733 SDGWCAMNHLRREDVLANSAVAFNMIHPEELENFILLNQEAAREKKRFHWEGRVVINGEV 792 Query: 537 KLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + DI+E Q++ +L A A+ S KS+FLA +SHE Sbjct: 793 RFALVESNPVFFDNGDCRWFGIQQDITERVQDQERLRIATMQADAASRAKSEFLANMSHE 852 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ +IG + ++ N YA + SG +L ++ND+LD SKIESGK+ Sbjct: 853 IRTPMNGVIGMTGLLLETDL----NETQRRYAETVRSSGQALLALLNDILDFSKIESGKL 908 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 L L + + S++ A EK + S ++P ++ D ++QI N++ N Sbjct: 909 ELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGN 968 Query: 715 AIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 A+ FT G ++++ + + + VRDTG+G+ ++ + F Q+ Sbjct: 969 AVKFTERG-EVVVRVSIQESGVRSQESQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVD 1027 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S + GTGLGL ++K + + G + S +GT Sbjct: 1028 ASITRKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQGTTFWFTI 1071 >gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 885 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 121/635 (19%), Positives = 247/635 (38%), Gaps = 31/635 (4%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTE- 245 + +F L + + S + R + + Sbjct: 16 KQTETALLESENRFRDLFHLAPIGMAEVSLGGQFLEVNSSFCEFIGYSRKELMQRGFNQI 75 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFE 301 + H D+ L+ E ++ + T+ N + Sbjct: 76 THPHDRDMSMNYFSRLIQGEFKQYNLEKRYRHKEGHWVYGILHCYLRLDTVGNPFSVITQ 135 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDD 359 + + + + +D P F + NL + N + + +S + Sbjct: 136 IQDISEYKKIEEDLKQQKEYLRLVLDNIPQQVF-WKDTNLVFKGCNKKWAEYAQLESAES 194 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + L ++++ + + S + A + + Sbjct: 195 VIGKTDYD-LFKNWEVAEFYRRQDRRVMTSKEPELNVIAPKQKPTTDGRQI-WLDISRVP 252 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + G+ + + + K+ + Q ++ + D + + TN Sbjct: 253 MLDTDGYVIGIIGVLEDITEQKEIDEKLRLT--QFS--IDKSRDYVLFTDINARFFYTNE 308 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A +K GY ++ L+ + + + + + ++ K + + Sbjct: 309 AATKTLGYSRDEFLQMQVKDIDPNASENQWSISWENLRQQG---SFTFESIHKMKTGEHI 365 Query: 540 SLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 S+ I + L +++ + DISE K + L AK+ AE + KS+FLAR+SHE+R Sbjct: 366 SVEITLSYLEYNNKEYGCAVVRDISERKHTEIVLQQAKEAAEAANRSKSEFLARMSHELR 425 Query: 598 TPLTAIIGFSEVIKNQ--RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 TPL AI+GF++++ R + + E+ I RSG +L+++ND+L++SKIE+G++ Sbjct: 426 TPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLINDVLEMSKIEAGQI 485 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 +L+ L + + +++L A K + + +++P+ I D ++Q+ +N+L N Sbjct: 486 SLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQTDESKLRQVLINLLGN 545 Query: 715 AIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 AI FT +G II+ T N +I V DTG G++ EL+ KPF Q ++ + Sbjct: 546 AIKFTDAG-CIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYVFKPFIQTETGRKSQ- 603 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +GTGLGL +++ + GK + S +GT Sbjct: 604 QGTGLGLSISQKFIKLMGGKITVSSQLGQGTCFRF 638 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 48/470 (10%), Positives = 121/470 (25%), Gaps = 40/470 (8%) Query: 63 SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122 + T L+SEN F + + G E++ + IG +++ ++ Sbjct: 18 TETALLESENRFRDLFHLAPIG-MAEVSLGGQFLEVNSSFCEFIGYSRKELMQRGFNQIT 76 Query: 123 DILHIDPNNH-IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 D + + L++ + + + EG +V L F Sbjct: 77 HPHDRDMSMNYFSRLIQGEFKQYNLEKRYRHKEGH--WVYGILHCYLRLDTVGNP--FSV 132 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS---QQSPPPHLRMK 237 + K+ + + + + + + L Sbjct: 133 ITQIQDISEYKKIEEDLKQQKEYLRLVLDNIPQQVFWKDTNLVFKGCNKKWAEYAQLESA 192 Query: 238 NKVSSLTEYYAHKDDVL----KTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGT 291 V T+Y K+ + + + ++TS+E L + Q Sbjct: 193 ESVIGKTDYDLFKNWEVAEFYRRQDRRVMTSKEPELNVIAPKQKPTTDGRQIWLDISRVP 252 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350 + + + + DE LT ++DK + FY N + Sbjct: 253 MLDTDGYVIGIIGVLEDITEQKEIDEKLRLTQFSIDKSRDYVLFTDINARFFYTNEAATK 312 Query: 351 LTKYKSVDDIE-IAGGLS--------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + ++ + ++ + + I+ L Sbjct: 313 TLGYSRDEFLQMQVKDIDPNASENQWSISWENLRQQGSFTFESIHKMKTGEHISVEITLS 372 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 +++N + + + Q E + ++ + L + L A Sbjct: 373 YLEYNNKEYGCAVVRDISERKHTEIVLQQAKEAAEAANRSKSEFLARMSHE-LRTPLNAI 431 Query: 462 -------------SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + + + R+ L + + Sbjct: 432 LGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLINDVLEMSKIE 481 >gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella amazonensis SB2B] gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1236 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 130/676 (19%), Positives = 228/676 (33%), Gaps = 49/676 (7%) Query: 156 NLYVPIDLAALP---IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF---SHLHE 209 + +P +L +LP ++ R +H + N P L D + Sbjct: 294 SQKIPSELHSLPESELFDAQGGII--RNGYYIHSVALHNAPWRLLYIQDVDDLFQESWDK 351 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 ++ V + + + S L + + + E Sbjct: 352 LQLTFILVVLALSVLVTIVHWQTRRSFVSPASRLLSHLEGCSQQPRAVPEKITPGWEPWF 411 Query: 270 PEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 N + L E L Y L +D Sbjct: 412 QLVSRIFEENQQYTKHLAEQNKRLDKLVARRTERLKETTERREREYA-----LLRSLLDS 466 Query: 329 CPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P F G+ N + + + + I ++ L + S A +L Sbjct: 467 IPEAIVFKDKEGHYLGCNKAAERMLGFSEAEMIGLSS--EELTSPEQGSRIRAEDEQVLT 524 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 L + + + N+ E M + + + ++ Sbjct: 525 ERKPLRYQEKIELA------GKPVLLDTLKLPFYNRRGELMGLIAVWRDVTREYESAEQL 578 Query: 448 EIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQ 503 + + ++A DG+ ++ E II N A + GY + + Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPAYYSMLGYKTNEFPALLSTIDSLIHP 636 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTM 558 + + Y + L + E K + + + + T Sbjct: 637 DDRIRVQEYREQYLKDPI-GAYEIEFRMRAKTGQYHWMLSRGRVVEFTQDAQPKRMVGTH 695 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AIIG ++ Sbjct: 696 KDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSL--- 752 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +Y + S +L I+ND+LD SKIE+GK+ L LD+ + ++ L L Sbjct: 753 -TEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALR 811 Query: 679 ANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736 A EK I + + + D + Q+ +N+LSNA+ FT +G I E Sbjct: 812 AQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNG---EIELGCEDVGER 868 Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + VRDTG+G++ + +K F Q S + GTGLGL ++K +V G Sbjct: 869 DHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGT 928 Query: 792 FYIFSTPAKGTLIEII 807 + S P G+ Sbjct: 929 MQVESEPGVGSTFSFT 944 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 81/639 (12%), Positives = 186/639 (29%), Gaps = 49/639 (7%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137 + D G+ ++ + +G +MIG+ +++ +L Sbjct: 465 DSIPEAIVFK-DKEGHYLGCNKAAERMLGFSEAEMIGLSSEELTSPEQGSRIRAEDEQVL 523 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 + + IE V +D LP Y+R E G + R L Sbjct: 524 TERKPLRYQE---KIELAGKPVLLDTLKLPFYNRRGELMGL--IAVWRDVTREYESAEQL 578 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDD 252 ++ + ++ G + I + L K + S + H DD Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPALLSTIDSLIHPDD 638 Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 ++ ++Y L + + + + E + + Sbjct: 639 RIRVQEYREQYLKDPIGAYEIEFRMRAKTGQYHWM-----LSRGRVVEFTQDAQPKRMVG 693 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 ++ ++ + + F AN S + T ++ + G ++L Sbjct: 694 THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLT 753 Query: 371 DAPKLS-DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + K D + L R + S + + + + + Sbjct: 754 EQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQ 813 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + GIE ++ + ++L +L + G I + G Sbjct: 814 EKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIEL----GCEDVGERD 869 Query: 490 EDILRKPFTVF----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 I K + + + + + + LG + + L+S+ Sbjct: 870 HRITLKFWVRDTGIGISREQQDKLFDAFAQA-DGSTTRKYGGTGLGLSISKHLVSMMGGT 928 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++ T ++ + + E+ +S ++ + P TA+ Sbjct: 929 MQVESEPGVGSTFSFTVSFEIAEEAKVVPMVVPERLASLRTLVVDD------NP-TALQI 981 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +S V+++ F E + +D+V LLD E + + Sbjct: 982 YSSVMRDFHFEVETASTGAEAL---YKLCKQQVDLV--LLDWMMPEMDGIQ-------VI 1029 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 +A+ E ++ A I+I T++A ++ D V Sbjct: 1030 DAIDEMVAE-GKLAARPVIIIMTAYAAEPLKVDLDSDRV 1067 >gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 1421 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 112/544 (20%), Positives = 215/544 (39%), Gaps = 48/544 (8%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTK 353 + + L E K P + +G + N + Sbjct: 429 TGVIWSVLDISERKHAEIELRNSEEKFRSMFMKQDAPMLLLDPENGVILDVNHAAEKFYG 488 Query: 354 YKSVDD----IEIAGGL--STLLDAPKLSDNNAIKPVML--YRSDRTCIAASARLHTIQW 405 Y + + I+ L L + + + + + Sbjct: 489 YSADEMEKMTIDQINTLSKEALKNEMESALAEERNFFVFKHRLKSGEIKSVEVHSSPFLL 548 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 L I + + K+ ++L+ ++ GI Sbjct: 549 GNRRVL-------------------FSIVFDITKREKAEEKLLAVSSLNKALLDNSAVGI 589 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQT 524 + + E +I+ T++ ++FGY ++++ K F + + + + +LS Sbjct: 590 FLASPERMIIETSKRAYEMFGYSADELIGKSFRIIHVSEESFEDFGTQYQNLLSDGRT-- 647 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + L S T+ DI+E K + + AK+ AE+ Sbjct: 648 -NIEYPFIKKNGVKIWCSVSGTPLDESDLSKGIIWTLQDITERKAAERAMLIAKEQAEEA 706 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS FLA +SHEIRTP+ AI+G S+V+ + P + ++ I S ++L I+ Sbjct: 707 NISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMAP----KEKDFLLKIHSSSKMLLGII 762 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LAD 700 ND+LD SKIE+ K+ L + +L+ +++ L A E + + +++P I + D Sbjct: 763 NDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQSAAEHGLELYFHKKSDVPEIIVGD 822 Query: 701 LRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + Q+ N+LSNA+ FT G I + H + + + DTG+G+++ ++ K Sbjct: 823 ELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHENRAIIGFSLTDTGIGISDEDISKLF 882 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDT 813 +PF Q +S + GTGLGL ++K +V+A G+ + S +G+ + ++ Sbjct: 883 QPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELSLSSVKGEGSTFSFDIDVEVVSWEQ 942 Query: 814 SHPH 817 SH H Sbjct: 943 SHEH 946 Score = 74.3 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 14/204 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + K+ ++ L ++ E + GI ++++ I+++N+ + GY E+++ K + Sbjct: 317 KKMTYKLSLQKQFLDNVFENNAAGIFVVDQNRNIITSNQRFCDILGYTKEELIGKNASFL 376 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLT 557 + + L + + L K K + + I+ ++ + Sbjct: 377 --HVSDESYLAFAPHFLKAKNGERSKVEYLIKDKNGKEVLCEFLGMSIEIDKNNTGVIWS 434 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSD--FLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DISE K + +L ++ + + K D L + P +I + + Sbjct: 435 VLDISERKHAEIELRNS-EEKFRSMFMKQDAPML------LLDPENGVILDVNHAAEKFY 487 Query: 616 GPLGNPRYIEYANYIDRSGNLVLD 639 G + + I+ L Sbjct: 488 GYSADEMEKMTIDQINTLSKEALK 511 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 37/376 (9%), Positives = 96/376 (25%), Gaps = 22/376 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D + + ++ +G ++IG + LK +N Sbjct: 341 IFVVDQNRNIITSNQRFCDILGYTKEELIGKNAS-FLHVSDESYLAFAPHFLKAKNGERS 399 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 K + V + + I ++ +G V + ++KF Sbjct: 400 KVEYLIKDKNGKEVLCEFLGMSI-EIDKNNTGVIW--SVLDISERKHAEIELRNSEEKFR 456 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + + + + D + K L Sbjct: 457 SMFMKQDAPMLLLDPENGVILDVNHAAEKFYGYS--ADEMEKMTIDQINTLSKEALKNEM 514 Query: 266 ESSLPEQEDF-----HTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEG 318 ES+L E+ +F + + + + L N Sbjct: 515 ESALAEERNFFVFKHRLKSGEIKSVEVHSSPFLLGNRRVLFSIVFDITKREKAEEKLLAV 574 Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 +L +D + F+ S + + + Y + + I + ++ + S Sbjct: 575 SSLNKALLDNSAVGIFLASPERMIIETSKRAYEMFGYSADELIGKSF---RIIHVSEESF 631 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + SD + + + ++ + + Sbjct: 632 EDFGTQYQNLLSDGRT----NIEYPFIKKNGVKIWCSVSGTPL-DESDLSKGIIWTLQDI 686 Query: 438 VDTRINKRKMEIEVMQ 453 + + +R M I Q Sbjct: 687 TERKAAERAMLIAKEQ 702 >gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1068 Score = 372 bits (956), Expect = e-100, Method: Composition-based stats. Identities = 102/400 (25%), Positives = 193/400 (48%), Gaps = 20/400 (5%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + G + R ++ ++ + IL+ ++ I I+ I N A Sbjct: 436 KEEVNLLKLIGEFIAIAEARQEAKEALQESEARFAGILDNANEAIISIDESHHIRLFNHA 495 Query: 481 VSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 K+FGY ++++ KPF + L + + + G K+E+ Sbjct: 496 AEKIFGYGGDEVMGKPFDLLLPSRYTESHRHYLELFEQGDETAREMGGREPVFGRRKDER 555 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + I KL ++ + DI+E KQ + L AK+ A+ + KS+FLA +SHE Sbjct: 556 EFLAEVSISKLNQRGKTIFTAIVRDITERKQAEEALKKAKEAADNANRAKSEFLASMSHE 615 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AI+GF++V+ + + I RSG +LD++ND+L++SKIE+G+ Sbjct: 616 LRTPLNAILGFTQVLGRNSY---LTEEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRT 672 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 + L + + ++++L A K + + +++P+ I D ++Q+ +N+L N Sbjct: 673 TFNEGSFDLYQLLDSLENMLRLRAEAKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGN 732 Query: 715 AIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 AI FT GG + + + + ++I + DTG+G+ + E++K + FGQ + Sbjct: 733 AIKFTEQGG-VTLRVKTGGMMPSSLSKKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESG 791 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + +GTGLGLP+++ V+ GK + S +G++ Sbjct: 792 RN-SHQGTGLGLPISQKFVELMGGKIGVNSILGRGSIFTF 830 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 37/304 (12%), Positives = 94/304 (30%), Gaps = 27/304 (8%) Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E + + ++ N + +P + + Y+ +++E L P Sbjct: 38 LTESEERWQLVLRGTNDGIWDWNLKTNELFLSPRWKEMLGYQD-EELENHFKTWRTLLHP 96 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 K + L+ ++ + + + + + G Sbjct: 97 KDVERVME---TLHEHFERKTDYYVVEFRLRCKDGSYKWILSRGQALWDHSGKPVRMAGS 153 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + L S+++ D I + +GI N+A ++ G + I+ Sbjct: 154 HTDISDRK-------ARQSLLRSLIDCIPDLIFYKDAQGIYRICNKAFAEFVGCKDKQII 206 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K + M Y ++++ + E+ +LL Sbjct: 207 GKTDFDLFPETLALKMRDYDHQLMTQKNSRRHEEWVDYCDGSRRLLDTLKTPLLGADGEL 266 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH-----EIRTPLTAIIGF 606 DI++ KQ++ L ++ + + L+ ++ E+ T + I+ Sbjct: 267 LGVIGISRDITDRKQKEKAL--------EQQAQRDHLLSNIARQLIDQELDTAINYILQA 318 Query: 607 SEVI 610 + + Sbjct: 319 TGDL 322 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 7/135 (5%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFL 501 + K+ + +L T+DGI N + L + ++ GY E++ K + L Sbjct: 35 QEKLTESEERWQLVLRGTNDGIWDWNLKTNELFLSPRWKEMLGYQDEELENHFKTWRTLL 94 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + L E K+ + + L S + + Sbjct: 95 HPKDVERVMETLHEHFE-RKTDYYVVEFRLRCKDGSYKWILSRGQALWDHSGKPVRMAGS 153 Query: 558 MHDISEWKQEKNKLS 572 DIS+ K ++ L Sbjct: 154 HTDISDRKARQSLLR 168 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 5/139 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTW 143 + DA G + ++ + +G ++IG D+ L Q N+ Sbjct: 177 LIFYKDAQGIYRICNKAFAEFVGCKDKQIIGKTDFDLFPETLALKMRDYDHQLMTQKNSR 236 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G+ +D P+ + E G GI ++ ++ Sbjct: 237 RHEEWVDYCDGS--RRLLDTLKTPLLGADGELLGV--IGISRDITDRKQKEKALEQQAQR 292 Query: 204 FSHLHEIKKGHSSVEKEKY 222 L I + E + Sbjct: 293 DHLLSNIARQLIDQELDTA 311 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 29/273 (10%), Positives = 73/273 (26%), Gaps = 18/273 (6%) Query: 59 QESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 E+ E+ F I +ID +++ + K G +++G Sbjct: 452 AEARQEAKEALQESEARFAGILDNANEAIISIDESHHIRLFNHAAEKIFGYGGDEVMGKP 511 Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGK------TTLWPIEGTNLYVPIDLAALPIYSR 171 + + + + H +L ++ + + + + ++ L + Sbjct: 512 FDLLLPSRYTESHRHYLELFEQGDETAREMGGREPVFGRRKDEREFLAEVSISKLNQRGK 571 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 IV K+ + + + K + + + Sbjct: 572 T------IFTAIVRDITERKQAEEALKKAKEAADNANRAKSEFLASMSHELRT-PLNAIL 624 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 ++ + S LTE D++ LL + + + I + T + Sbjct: 625 GFTQVLGRNSYLTEEDKTNLDIISRSGEHLLD----LINDILEMSKIEAGRTTFNEGSFD 680 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L L R + + P+ Sbjct: 681 LYQLLDSLENMLRLRAEAKGLQLIFDRVSDVPQ 713 Score = 43.5 bits (101), Expect = 0.16, Method: Composition-based stats. Identities = 23/270 (8%), Positives = 70/270 (25%), Gaps = 19/270 (7%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHI--GDLLKRQNTWYGKTTLWP 151 +S + +G ++ + ++ ++ + + + L Sbjct: 66 LFLSPRWKEMLGYQDEELENHFKTWRTLLHPKDVERVMETLHEHFERKTDYYVVEFRLRC 125 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ Y I ++ + + R G ++L + L L K Sbjct: 126 KDGS--YKWILSRGQALWDHSGKPV--RMAGSHTDISDRKARQSLLRSLIDCIPDLIFYK 181 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEESSL 269 + Y I ++ ++ T++ + + + ++++S Sbjct: 182 DA-----QGIYRICNKAFAEFVGCKDKQIIGKTDFDLFPETLALKMRDYDHQLMTQKNSR 236 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETV 326 +E + ++ L E + + + E + + Sbjct: 237 RHEEWVDYCDGSRRLLDTLKTPLLGADGELLGVIGISRDITDRKQKEKALEQQAQRDHLL 296 Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355 + Y + LT Sbjct: 297 SNIARQLIDQELDTAINYILQATGDLTGSD 326 >gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 603 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 95/472 (20%), Positives = 203/472 (43%), Gaps = 17/472 (3%) Query: 343 YANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + + + + + D++ G + + + ++ T + Sbjct: 142 FWSRALYDIFEVDPDTYDLDRLRGFEMI---AEKDRSLMMETHRRLMEQGTDYDVEVTVC 198 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + + Q + G+ + R ++++ + L L+++ Sbjct: 199 S----GKGRVFPARVMGTALRQEGRIVQIYGLMYDVAQRRHVEKELRYQQFLLRMFLQSS 254 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + + + +G L + L G +++ K + +++ Sbjct: 255 PAIVYVKDLQGRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQEQQ 314 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579 ++ E+ +K + + DI+E + + +L AK+ AE Sbjct: 315 PRSYEEKLTFHDGSQKYYLSEKFPLRDEDGHLIAIAGVSTDITELHRYQQELERAKEAAE 374 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS+FLA +SHEIRTP+ +I+G SE++ + P ++ + R+ + +L+ Sbjct: 375 AGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSP----DQRQFVTILTRASSSLLN 430 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD+SKIESG M + P S+ E+V A+ L+ + A EK++ ++ +P IL Sbjct: 431 LINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPEKIL 490 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D +Q+ +N++ N + FT G ++ + ++ + V+DTG+GM +++ Sbjct: 491 GDATRFQQVLINLIGNGLKFTTHG-EVRVQLKVN-GHQLWVGVKDTGIGMAPEQMQGLFT 548 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q +S R GTGLGL ++K +V+ G + S +G++ PL Sbjct: 549 RFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIGQGSVFYFTLPL 600 Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 32/367 (8%), Positives = 100/367 (27%), Gaps = 27/367 (7%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP-I 152 +++ + +G +++ + ++ + + +++ + + Sbjct: 24 RPAKLNHVWSEVLGWSHEELMQIPFNELIHPEDVKNIVSRYEKIRKGDVLRNFLLRYRCK 83 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKKFSHL--HE 209 +G ++ + P+ + +V LG+ + + Sbjct: 84 DGHYKFLSWNYQFDPVTNEA--------LCVVKDTTPQKIFTEILGQANAEAPIGTWSMD 135 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + G + YDIF P +++ A KD L E + L + + Sbjct: 136 LTTGKHFWSRALYDIFEV---DPDTYDLDRLRGFEM-IAEKDRSLMMETHRRLMEQGTDY 191 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + L+ + + + L + Sbjct: 192 DVEVTVCSGKGRVFPARVMGTALRQEGRIVQIYGLMYDVAQRRHVEKELRYQQFLLRMFL 251 Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 P +V G +P+F L +SV+ + + + + Sbjct: 252 QSSPAIVYVKDLQGRYLLVSPTFENLVGKRSVELVGKTDA--QIFGVEDARRFSDSDNQL 309 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + H + ++ F ++ + G+ + + ++ Sbjct: 310 IQEQQPRSYEEKLTFH----DGSQKYYLSEK-FPLRDEDGHLIAIAGVSTDITELHRYQQ 364 Query: 446 KMEIEVM 452 ++E Sbjct: 365 ELERAKE 371 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 2/128 (1%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + ++ E ++D I + + N S++ G+ E++++ PF + + Sbjct: 2 ESRYEALFELSNDMIGVFGEDWRPAKLNHVWSEVLGWSHEELMQIPFNELIHPEDVKNIV 61 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 +I D+ + + K+ L + P ++ + D + K Sbjct: 62 SRYEKIRKGDVLR--NFLLRYRCKDGHYKFLSWNYQFDPVTNEALCVVKDTTPQKIFTEI 119 Query: 571 LSHAKKIA 578 L A A Sbjct: 120 LGQANAEA 127 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 13/237 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D G +S +G + +++G + + ++ L++ Q + Sbjct: 262 DLQGRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQEQQPRSYEEK 321 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G+ Y + P+ + G + + + +R + Sbjct: 322 LTFHDGSQKYYLSE--KFPLRDEDGHLIAIAG--VSTDITELHRYQQELERAKEAAEAGT 377 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLTSEES 267 K + + P + L + D +S + Sbjct: 378 RAKSEFLANMSHEIR-------TPMNSIMGMSELLLDTELSPDQRQFVTILTRASSSLLN 430 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + D I ++ +++ + + + E L R E + PE Sbjct: 431 LINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPE 487 >gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity [Rhodopirellula baltica WH47] Length = 1739 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 130/762 (17%), Positives = 280/762 (36%), Gaps = 46/762 (6%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQN 141 + W +A G ++ S + G + +G+ DV + + D + + Sbjct: 856 AQIVWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDR 915 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + L G Y + P + + R G+ R + Sbjct: 916 PLVLEYRLRNRHGE--YRWFQVRTAPQRRPDGTVN--RWVGMNIDIHDQKQSRLELADRE 971 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + G V + +S +++V + A + Sbjct: 972 AHLRRVINNQLGLVGVIDRNGLLLEVDDRSLEYARVNRHEVIGKPFHEAPWWNYDPDVAQ 1031 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYF-----GTLQNNSKES----FEYLSHRNHPS 310 + + E + + + ++L + + ++ + R+ Sbjct: 1032 QMRDAMERAFKGEPVRYDVSLFAHGDDGVLIDFMIAPVFDDDGNIEYLIPSGVDIRDRKK 1091 Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E + + G + N + + Y VD++ + ++ L Sbjct: 1092 AELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYG-VDELTGSN-INVL 1149 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + P+ S+++ I R T + ++ ++ E + Sbjct: 1150 IPEPEHSEHDGYLKAYEETGQSHII-GHQRQVTGRRKDGSTFSLDLSVSETSLSGEH--R 1206 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 GI + D +++ + ++ L A + + + +LFG Sbjct: 1207 YVGIVRDVSDRVRSEQAKKNASRRMQMALRAGGMAAWEWTPKK--SYWTKEMYELFGVTD 1264 Query: 490 EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RI 543 + P + + + E + + E + ++ + + Sbjct: 1265 DR-KGSPELCFSLTHPDDVESLKRHWQEAIEGN--HDYEYEFRIVRPDGEMRWITGMGEV 1321 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + K + D ++ + L +++ A + S+ KS FLA +SHEIRTP+TAI Sbjct: 1322 VRGKSGNVTRMYGVNWDSTQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAI 1381 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G++E++++ + + + + I R+G+ +LDI+ND+LD+SKIE+GK+++ E Sbjct: 1382 LGYAELLQD----IIQDTEGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFD 1437 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 + + S++++ A E + + + IP I +D + +KQ+ +N++ NAI FTP G Sbjct: 1438 PAHLIEDVRSIMEVRAKEAGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPEG 1497 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ + + + V DTG+G+T + E+ PF Q +S GTGLGL +++ Sbjct: 1498 NVRLVVRMDSDPIRLCIDVIDTGIGITLEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISR 1557 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII-FP-------LYDTSHP 816 + + G + S G+ + FP L D S P Sbjct: 1558 RLAEMLGGTIHFQSEVGVGSTFTLSVFPGDLTGVALVDHSQP 1599 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 46/430 (10%), Positives = 119/430 (27%), Gaps = 34/430 (7%) Query: 177 GFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------KYDIFSQQS 229 G RG F NR L + + + + E ++ Sbjct: 579 GLRGAFAEAKANRRRVVRDDLLIMSESGQQRVKLTIQPMMQLGHETELFMVAFEDLGPSI 638 Query: 230 PPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 P + + S H ++ + L T+ + ++ N + Sbjct: 639 APSDSSTDDSIGSDPSIAADPHAQQRIEQLERELATTRDDLDRSIQEMEATNEELTSSYN 698 Query: 288 YFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYA 344 + + + E L S S + I F+ ++ Sbjct: 699 ELLVMNQGLQTANEKLEISKEEIRSSSEAVARANADLQNLLRSTRIATIFLDDDLSVRSF 758 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 P+ + + D + AP + D + + Sbjct: 759 TPAATEIYGLIATDVGRPLTQI-----APNVQDMPPLPNWEQLIQEDGVEH--------T 805 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 A + ++ + ++ S++ A++ Sbjct: 806 IVANTGKAFIRRVLPYRSYSGDHDGIVLTFTDVT-------QLRESEELFQSLVRASAQI 858 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + I N +G++ S + + + G +E + + + + + T+ ++ D Sbjct: 859 VWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDRPLV 918 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 LE E + +R ++ P + + DI + KQ + +L+ + + Sbjct: 919 LEYRLRNRHGEYRWFQVRTAPQRRPDGTVNRWVGMNIDIHDQKQSRLELADREAHLRRVI 978 Query: 583 SHKSDFLARV 592 +++ + + Sbjct: 979 NNQLGLVGVI 988 >gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797] Length = 818 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 110/520 (21%), Positives = 222/520 (42%), Gaps = 30/520 (5%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365 + ++ ++ + GN S+ T DD + G Sbjct: 138 QRKEIERDLRWMQSRYEAFLNSTSSIIWTTDPRGNFIVPQISWQRFTGQT-WDDHQGDGW 196 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L LL ++ A + + + H E+ + +Q Sbjct: 197 LRALL-----PEDRAELAALWSKPAGKQSSYRVHGHIWHAESESYRPVITEAVPVFDQEG 251 Query: 426 ENMPQNGIEPEDVDTR-------INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + G + + R + + + +L I + G+ +++RE L N Sbjct: 252 QILEWVGTVSDIHEQRMAEESLSAAEAESSRQKRELELIYDTAPVGMGLVDREYRYLRIN 311 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK---E 535 ++++ G E L + + + ++ + G T + Sbjct: 312 DTLARINGISREAHLGRVCFELVPGIADR-IKPLYDQVFQTGKA-VKNQEVRGKTPASDK 369 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 E+ + S + DI+ K+ + L +++ A + + KS+FLA +S Sbjct: 370 ERCWLVNYHPMTHRNGEVWGVSSIVQDITARKEMEEALRDSEQQASQANLAKSEFLANMS 429 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ A++G+++V+ G L +P + R+G +L+++ND+LD+S+IE+G Sbjct: 430 HEIRTPMAAVLGYADVLL----GHLKDPDNRNCVMIMKRNGEHLLELINDILDLSRIEAG 485 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 K+ + SL E V++ +L+Q+ A+EK +++ F +P I+ D ++QI +N++ Sbjct: 486 KLEVDLNEASLRELVADVQTLMQVRADEKNLMLNVKFTGQVPEKIVTDATRLRQILINLI 545 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NAI FT G ++ + + + + V+DTG+GM+ ++++ KPF Q +S Sbjct: 546 GNAIKFTDQG-EVRLVIRLLPDSDKPIIEFAVQDTGIGMSADQIQRLFKPFSQGDSSVTR 604 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GLGL ++K +V G+ + S +G++ I P Sbjct: 605 AYGGSGLGLAISKRLVQMLKGQLKVKSEVGQGSIFRIRLP 644 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 2/140 (1%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D I++ L + G +G ++ + + + + Sbjct: 301 VDREYRYLRINDTLARINGISREAHLGRVCFELVPGIADRIKPLYDQVFQTGKAVKNQEV 360 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 ++ + P+ RN E G IV + + +++ S + Sbjct: 361 RGKTPASDKERCWLVNYHPMTHRNGEVWGVS--SIVQDITARKEMEEALRDSEQQASQAN 418 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 K + + Sbjct: 419 LAKSEFLANMSHEIRTPMAA 438 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 22/259 (8%), Positives = 59/259 (22%), Gaps = 14/259 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D G + G G + + + Y Sbjct: 164 IWTTDPRGNFIVPQISWQRFTGQTWDDHQGDGWLRALLPEDRAELAALWSKPAGKQSSYR 223 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-------DPRALGK 198 + Y P+ A+P++ + + G V A Sbjct: 224 VHGHIWHAESESYRPVITEAVPVFDQEGQI--LEWVGTVSDIHEQRMAEESLSAAEAESS 281 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDV 253 R ++ +++ + +Y + ++ + L D + Sbjct: 282 RQKRELELIYDTAPVGMGLVDREYRYLRINDTLARINGISREAHLGRVCFELVPGIADRI 341 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 T + E + + + + + + E + S + Sbjct: 342 KPLYDQVFQTGKAVKNQEVRGKTPASDKERCWLVNYHPMTHRNGEVWGVSSIVQDITARK 401 Query: 314 YFDEGENLTPETVDKCPIP 332 +E + + + + Sbjct: 402 EMEEALRDSEQQASQANLA 420 >gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 778 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 123/610 (20%), Positives = 237/610 (38%), Gaps = 36/610 (5%) Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + V IF SP L + + + + K +L + + + Sbjct: 38 RYLYVNPAWVRIFGYDSPEDVLVSITDIGTQVYVDPAQREEFKR----VLEAHGEVVNFE 93 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDK 328 F + + + +++ Y A + + + D Sbjct: 94 SKFKRRDGSIVWVSRNARAVRDAQGRISHYQGFTTDITERKQSEAALQKQKAMLEHLFDS 153 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P + + G + N SF L Y+ D L + + + A L Sbjct: 154 SPEAIAIVDNQGFVLQINKSFTYLFGYEWEDAHGKQI---NDLVSQGMYRDEAGHYSDLV 210 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + T + + + + I + D ++ ++ + Sbjct: 211 FKNGTI--VETETVRCTKDGTPLDVVLIGYPILID--GRIIGAYAIYRDITDRKLAEKSL 266 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + + ++ A+ GI I ++ GIIL N+ +S + GY V +++ + + + + Sbjct: 267 QESEERFKALHNASFGGITIHDK-GIILDCNQGLSGITGYSVNELIGMDGLLLIAEKSRK 325 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565 ++ + +G K + LR+ + +P+ + D +E K Sbjct: 326 MVMKNILAGYEKP------YEAVGLRKNGQEYPLRLEARNIPYKGRMVRSVEFRDDTERK 379 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L A+ A+ + KS+FLA +SHEIRTPL ++G L + E Sbjct: 380 LVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGL----MQLLQTTLLDDEQRE 435 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + RS + + ++ DLLDISKIE+GKM++ E SL E L + A++K + Sbjct: 436 IVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELFAVNADKKNVS 495 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEVI--L 739 + ++P IL + ++QI N++ N++ FT G ++ + N E+ Sbjct: 496 LEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQG-RVRLEMAPIAPAKNGELRLLF 554 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L KPF Q+ S + +G GLGL + + +V+ G Y+ S Sbjct: 555 SVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRGHIYMESVLG 614 Query: 800 KGTLIEIIFP 809 KGT + ++ P Sbjct: 615 KGTAVHVVLP 624 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 35/399 (8%), Positives = 93/399 (23%), Gaps = 49/399 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKR-QNT 142 ++ G ++ + G + + + + + D+ +++DP +L+ Sbjct: 30 VFSSTPEGRYLYVNPAWVRIFGYDSPEDVLVSITDIGTQVYVDPAQREEFKRVLEAHGEV 89 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 ++ +G+ V + A + S ++GF A ++ Sbjct: 90 VNFESKFKRRDGSI--VWVSRNARAVRDAQGRISHYQGF--TTDITERKQSEAALQKQKA 145 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 HL + ++ + + + AH + + Sbjct: 146 MLEHLFDSSPEAIAIVDNQGFVLQINKSFT------YLFGYEWEDAHGKQINDLVSQGMY 199 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL--------------QNNSKESFEYLSHRNH 308 E + + + T + Y + Sbjct: 200 RDEAGHYSDLVFKNGTIVETETVRCTKDGTPLDVVLIGYPILIDGRIIGAYAIYRDITDR 259 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 E E + ++ G + N +T Y + I G+ Sbjct: 260 KLAEKSLQESEERFKALHNASFGGITIHDKGIILDCNQGLSGITGYSVNELI----GMDG 315 Query: 369 LLDAPKLSDN----------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 LL + S + R + I + ++ F Sbjct: 316 LLLIAEKSRKMVMKNILAGYEKPYEAVGLRKNGQEYPLRLEARNIPYKGRMVRSVEFRDD 375 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + + + + L ++ Sbjct: 376 TERK--------LVEAELIKARDAAQAANQAKSEFLANM 406 >gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3] gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29] Length = 571 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKRLE--------------QMRKDFLANVSHELKTPITS 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ E Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMET 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 420 VDMKGILEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPGRLKQIFINLINNAIVYTPA 478 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1120 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 130/746 (17%), Positives = 261/746 (34%), Gaps = 52/746 (6%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 +++L + ++ + D H D + L R T + L Sbjct: 245 FLHANKQLCVLLECQPKALLNTPIDQWLDPRHRDYYIDQYERLVRHLTENFELELPLCTA 304 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 V ++L+ ++ + + + N A K +K+F + E Sbjct: 305 LGRRVSVNLSTRALWDTSGRITHCIHTAV--DLSEHNHIIAQVKESEKRFRAIFEHAGLA 362 Query: 215 SSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSL 269 + I S V + H D + + L + S Sbjct: 363 VAQGDIHGTIIKVNSAYANLLGYSPDELVGRSLQSLTHPSDFPENLSLLHDLAKKKRSVY 422 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPET 325 ++ + + + L N E + + A E E + Sbjct: 423 TLEKRILHKDGSWIWVESTVTALTNAMDEPEFLINMTRDITDRRRAEAALVESEQRYRQL 482 Query: 326 VDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKLSDNN 379 + + +G + AN + Y I L+ ++ Sbjct: 483 FQRNKAVELLIDPVNGQIVDANMAAADYYGYSCDTLRQMNIAQINILTRDEIEQEMLRAE 542 Query: 380 AI----KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 S ++ L + + + N Sbjct: 543 QENRNHFQFRHRLSSGEVRDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHN---- 598 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494 + ++E +L +IL++ + + + + G IL NR + + G ++ Sbjct: 599 --------RHQLEASHGRLITILDSLQSIVYVADPQTGEILYHNRYLFDIAG----NLKG 646 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + + Q+ E + + + + + + Sbjct: 647 EREELLYPNKKRLSQGTPASRSRGRNHAQSWEYCSPINHR-----WYSAHSQPITWVDGR 701 Query: 555 SL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 ++ DI+ KQ + L AK++AE + KSDFLA +SH+IRTP+ A++G E++ Sbjct: 702 TVRLEVATDINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLG 761 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +P Y I R+G+ +L ++ND+LD+SKIE+G++ L + +L E V Sbjct: 762 ESSL----DPEQSHYLKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHV 817 Query: 672 ISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + +++ A+EK + ++T R+ D + ++QI LN+L NA+ FT G + ++ Sbjct: 818 MDILRHKASEKGLQLQTHLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGS-VSLTLQ 876 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + +V DTG G+ + + +PF Q + G+GLGL + +V A G Sbjct: 877 QQPDGQYSFQVADTGPGIAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRG 936 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S G++ PL P Sbjct: 937 TLWLKSQLGHGSIFYFTLPLATAMEP 962 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 63/525 (12%), Positives = 131/525 (24%), Gaps = 47/525 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D S + +G + I +H D + L+ G Sbjct: 99 MWEWDIASGALYFSCHWERMLGFEPGE-IPHTYQAWITQIHPDDKTATLEALE--QHLQG 155 Query: 146 KTTLWPIEGT-----NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 T + IE ++ + + +++ + R G + Sbjct: 156 HTQHFEIEHRQHTKKGTWLWLLTRGKVVQWGDQQ-TPLRMMGTQMNVTDRIRGEQALRFA 214 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS----------------PPPHLRMKNKVSSLT 244 + + + + I + P L Sbjct: 215 HTQLKQQERLFHDYFAHGVVGMAITTPDRLFLHANKQLCVLLECQPKALLNTPIDQWLDP 274 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + D + L + E LP T + + L + S + Sbjct: 275 RHRDYYIDQYERLVRHLTENFELELP----LCTALGRRVSVNLSTRALWDTSGRITHCIH 330 Query: 305 HRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 S A E E + + HG + N ++ L Y + Sbjct: 331 TAVDLSEHNHIIAQVKESEKRFRAIFEHAGLAVAQGDIHGTIIKVNSAYANLLGYSPDEL 390 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + L P N L + R+ R I + + + Sbjct: 391 VGRSL---QSLTHPSDFPENLSLLHDLAKKKRSVYTLEKR---ILHKDGSWIWVESTVTA 444 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTN 478 N E + + D R + + + + + +I+ G I+ N Sbjct: 445 LTNAMDEPEFLINMTRDITDRRRAEAALVESEQRYRQLFQRNKAVELLIDPVNGQIVDAN 504 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A + +GY + + + + L ++ Sbjct: 505 MAAADYYGYSCDTLRQMNIAQINILTRDEIEQEMLRAEQENRN----HFQFRHRLSSGEV 560 Query: 539 LSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKE 581 + I + L +HDI+E ++ + LSH + E Sbjct: 561 RDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHNRHQLEAS 605 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 46/434 (10%), Positives = 119/434 (27%), Gaps = 44/434 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKT 147 D HG + +++ +G +++G L ++ N + L +++ + + Sbjct: 367 DIHGTIIKVNSAYANLLGYSPDELVGRSLQSLTHPSDFPENLSLLHDLAKKKRSVYTLEK 426 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +G+ ++V + AL EF + A ++++ L Sbjct: 427 RILHKDGSWIWVESTVTALTNAMDEPEFL----INMTRDITDRRRAEAALVESEQRYRQL 482 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP---LLTS 264 + K + + +L + + ++L ++ L Sbjct: 483 FQRNKAVELLIDPVNGQIVDANMAAADYYGYSCDTLRQMNIAQINILTRDEIEQEMLRAE 542 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 +E+ Q + + + G +Q + + A + Sbjct: 543 QENRNHFQFRHRLSSGEVRDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHNRHQL 602 Query: 323 PE-------TVDKCPIPFFVYS--HGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTLL 370 +D +V G + Y N + + + + + Sbjct: 603 EASHGRLITILDSLQSIVYVADPQTGEILYHNRYLFDIAGNLKGEREELLYPNKKRLSQG 662 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 S Y S SA I W ++ + Sbjct: 663 TPASRSRGRNHAQSWEYCSPINHRWYSAHSQPITWVDGRTVRL----------------- 705 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR--AVSKLFGYP 488 + + + +++ + S A SD +A ++ + N + +L G Sbjct: 706 -EVATDINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIR-TPMNAVLGMVELLGES 763 Query: 489 VEDILRKPFTVFLE 502 D + + + Sbjct: 764 SLDPEQSHYLKIIR 777 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 27/288 (9%) Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D AI M H ++ + + + G Sbjct: 10 PQDRPAILQAMAQAWQNPGQPVEVEFH-VEIGEIWTKVIRCVMQSTPRPSGSPQRLFGSV 68 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 R + +L ILE +G+ + L + ++ G+ +I Sbjct: 69 QNITLLRKIGDALVHSEERLNLILEGAQEGMWEWDIASGALYFSCHWERMLGFEPGEIPH 128 Query: 495 --KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPF 550 + + + + + L + L + E TK+ L L + + Sbjct: 129 TYQAWITQIHPDDKTATLEALEQHLQGHTQH-FEIEHRQHTKKGTWLWLLTRGKVVQWGD 187 Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA----RVSHEIRTP---- 599 T ++++ + + L A +++ D+ A ++ I TP Sbjct: 188 QQTPLRMMGTQMNVTDRIRGEQALRFAHTQLKQQERLFHDYFAHGVVGMA--ITTPDRLF 245 Query: 600 LTA---IIGFSEV----IKNQRFGPLGNPRYIE-YANYIDRSGNLVLD 639 L A + E + N +PR+ + Y + +R + + Sbjct: 246 LHANKQLCVLLECQPKALLNTPIDQWLDPRHRDYYIDQYERLVRHLTE 293 >gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 918 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 108/527 (20%), Positives = 204/527 (38%), Gaps = 53/527 (10%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + E ++ F V G + N ++ L+ Y + + + T+ Sbjct: 136 EQIRQHELQYRAVIETSKDGFLVVDMQGRILETNDAYACLSGYSAEELV-------TMNI 188 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + +A + A W+ + + E Sbjct: 189 GDLEAKMSASDVAHVLTGLAEQGHARFETQHKTWSGH----IWPVEINVTYIAAEGGRCF 244 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + ++ ++ +L +E + + I + G+I N A + + GY + Sbjct: 245 SFLHDISQRKQDEAQLR----KLSQAVEQSPNSNVICDTNGVIEYVNAAFTAITGYSASE 300 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + F T + L + L + + + K + + I+ + + Sbjct: 301 AIGRKTGFFKSGLTQPEVYAALWQTLQQG--EVWQGEFINRRKNGEDYTDFAIVSPIRQA 358 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFL 589 Y DI++ K +L ++ AE + KS+FL Sbjct: 359 DGEITHYVAIQKDITQKKLMDEELEIYRRDLEALVVKRTSEMFEAKTQAEAANKAKSEFL 418 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ AIIGF+E+ + + + +Y + +L I+N++LD+SK Sbjct: 419 ANMSHEIRTPMNAIIGFNELCLRTQL----SDKQKDYLTKAGSAAQSLLHIINEVLDLSK 474 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQI 707 IE+G+ L P+ + V L+ + A +K + I +I + D ++QI Sbjct: 475 IEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIEQYPLRGDPMRLQQI 534 Query: 708 ALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 LN+ SNAI F+ G I I E+ V+D+G+G++ +L KPF Q Sbjct: 535 LLNLCSNAIKFSTQGS-ISIRCQLGAISGQAVELKFAVQDSGIGISPAQLGLLFKPFSQA 593 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIF 808 +S R GTGLGL + + +V+ G+ ++ S P G+ + F Sbjct: 594 DSSTTRRFGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFTVRF 640 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 49/386 (12%), Positives = 108/386 (27%), Gaps = 25/386 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + E ++ G A +++ M + D+ + H+ L Q +T Sbjct: 159 VDMQGRILETNDAYACLSGYSAEELVTMNIGDLEAKMSASDVAHVLTGLAEQGHARFETQ 218 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G V I++ + G R F +H A ++L + Sbjct: 219 HKTWSGHIWPVEINVTYIAA-------EGGRCFSFLHDISQRKQDEAQLRKLSQAVEQSP 271 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ + L + + Sbjct: 272 N--SNVICDTNGVIEYVNAAFTAITGYSASEAIGRKTGFFKSGLTQPEVYAALWQTLQQG 329 Query: 269 LPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 Q +F N YT ++ E Y++ + + DE + + Sbjct: 330 EVWQGEFINRRKNGEDYTDFAIVSPIRQADGEITHYVAIQKDITQKKLMDEELEIYRRDL 389 Query: 327 DKCPI---PFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + + + AN + FL ++ + G + L +LSD Sbjct: 390 EALVVKRTSEMFEAKTQAEAANKAKSEFLANMSHEIRTPMNAIIGFNELCLRTQLSDKQK 449 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP----- 435 + ++ + + + + IP + + G+ Sbjct: 450 DYLTKAGSAAQSLLHIINEVLDLSKIEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGL 509 Query: 436 ---EDVDTRINKRKMEIEVMQLCSIL 458 D+D I + + + M+L IL Sbjct: 510 TIHVDLDEHIEQYPLRGDPMRLQQIL 535 >gi|196231944|ref|ZP_03130800.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224066|gb|EDY18580.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 739 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 105/576 (18%), Positives = 221/576 (38%), Gaps = 22/576 (3%) Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + ++ + P + + D+ + + + L + +K +L Sbjct: 37 SASIPLRHLGGESHRNPSPPRFAPAGAAERDYCRVP-RPTADRLHIAKLLDPTKVMVPHL 95 Query: 304 SHRNHPSL-SAYFDEGENLTPETVDKCPI-PFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360 A + E E V+ F + N + Y++ + + Sbjct: 96 HMPPRAKPDRANWHETEERFRLLVESVKDYGIFTLDADGCVTSWNEGARRIKGYEAAEIL 155 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 S + + +++ ++ ++ + A I Sbjct: 156 G--SHFSRFYPPEDVLAGKPERELVIAIAEGR---VEDEGWRLRKDGTRFWADVVITSLW 210 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479 + E + + + R + + Q +++ ++ I +++ G +++ N Sbjct: 211 DSATGELKGFGKVTRDLTERRQAEIALRQSEEQFRLLVDCVAEYAIFMLDPTGHVVTWNS 270 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEK 537 K GY ++I+ K F F + L E S + K+ Sbjct: 271 GAEKAKGYLAKEIIGKHFGCFYTKEDRDTDLPNRLLEEARSHGHVRAQGTRVR---KDGT 327 Query: 538 LLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 ++I + S +S DI+E + ++ AK AEK + K +FLA +S Sbjct: 328 TFQADVLITAIRDSTGQLQGFSKVTRDITEQLRI-REMETAKLTAEKANEAKDNFLAVLS 386 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPLT +I + + R + + +E+ + I R+ L +++DLLD+++I G Sbjct: 387 HELRTPLTPVIAGASYLIENR-SAISDEEMLEHLHTIRRNAQLEAQLIDDLLDLTRISRG 445 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 KM LH E V + A+ + +++Q K++ + D ++Q+ N+++ Sbjct: 446 KMILHPEAVDIHAALRDVGAILQEEIQRKQLALSYDLQATGYWSWVDPTRIRQVFWNLIN 505 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI FTP GG+I + + + S + + V D+G+G+ + ++ F Q + G Sbjct: 506 NAIKFTPEGGRIKVRSANPSPTCLRVDVSDSGLGIAPEQQQRIFGAFEQGEVDTTRKFGG 565 Query: 774 TGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIF 808 GLGL + + +V+ G + S KG + Sbjct: 566 LGLGLAITRHLVEQQNGSISVTSEGKGKGACFTVTL 601 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 71/269 (26%), Gaps = 9/269 (3%) Query: 58 NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 + N+ ++E F + +DA G + +E + G A +++G Sbjct: 99 PRAKPDRANWHETEERFRLLVESVKDYGIFTLDADGCVTSWNEGARRIKGYEAAEILGSH 158 Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFS 176 + +L+ + W + D+ ++ E Sbjct: 159 FSRFYPPEDVLAGKPERELVIAIAEGRVEDEGWRLRKDGTRFWADVVITSLWDSATGELK 218 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS----SVEKEKYDIFSQQSPPP 232 GF + ++ +++F L + ++ S Sbjct: 219 GFGK--VTRDLTERRQAEIALRQSEEQFRLLVDCVAEYAIFMLDPTGHVVTWNSGAEKAK 276 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFG 290 K + + K+D LL S + + + + Sbjct: 277 GYLAKEIIGKHFGCFYTKEDRDTDLPNRLLEEARSHGHVRAQGTRVRKDGTTFQADVLIT 336 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 +++++ + + + E E Sbjct: 337 AIRDSTGQLQGFSKVTRDITEQLRIREME 365 >gi|257094176|ref|YP_003167817.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046700|gb|ACV35888.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1119 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 130/775 (16%), Positives = 270/775 (34%), Gaps = 59/775 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 +D G L E+S+ +G ++IG + D + + L T Sbjct: 212 LDTTGNLVEVSDSFCAMLGYSREELIGSNMAGRDARFADDDGPSRLRQELDSPQRRVLHT 271 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-- 205 +G +P+D++ +P+ + + + R + + +RL + Sbjct: 272 RYRHRDGRL--IPVDVSGVPVLIEGQRLLFYSARDVTERKRAEEELALERQRLADQLRFT 329 Query: 206 -HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L + + E + ++ + + + + Sbjct: 330 SQLIDTIPNPVFFKDENGRYLGCNTAFETYIGIERDNLIGRSVHDIVPSSLADKYLAADR 389 Query: 263 T--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSAYFD 316 + + Q + + + T L + + Sbjct: 390 ALFEQRGTQTYQAEVRYADGSLREVVFNKATFNRADGGLGGLVGVMLDITERMRMESALK 449 Query: 317 EGENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + T + V NP+ LT Y S+ D+ G L Sbjct: 450 QQAAFTDGIIAAMVDGIAVCHEIPQPPQVRFTVWNPAMQKLTGY-SLSDVNELGWQRALQ 508 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + ++ + + R D TI+ + + + Sbjct: 509 VDDERQEDARQRAEGMRRGD----HLRGDEWTIRRRDGERRTVQVHTTFVSPPSG-GVHL 563 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + ++ + + L+ + ++ EG I NRA L GY Sbjct: 564 LLVLRDVTARKAAEQLLRQQHNLAQRYLDTVQSLMLALDTEGQITMINRAGRDLLGYTEN 623 Query: 491 DILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++L + + T + + I++ +L + ++ L + L Sbjct: 624 ELLGRCWFSTCLPQPSGTERGLPTFRRIIAGELDASFSAEDSVLCRDGSLRLIGWKTGAL 683 Query: 549 PFSSCYSL----TMHDISEWKQEKNKLSHAK------------------KIAEKESSHKS 586 + + + DI E K+ + +L + + AE+ + KS Sbjct: 684 TDDAGRIIGTLSSGADIGERKEVEAELERYRAHLETLVAQRTAELSLAKEAAERANRAKS 743 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FL+ +SHE+RTP+ AIIGF+++++ + + + + I ++ +LD++N++LD Sbjct: 744 EFLSSMSHELRTPMNAIIGFAQMLE---YDGELSADQHDSVHEILKASRHLLDLINEVLD 800 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +++IESG++ L E + V + L++ A I + T + AD +KQ Sbjct: 801 LARIESGRIELSLETTDIAAVVDDCRHLIEPLAAPLAITLSTLVPAGA-TVHADRTRLKQ 859 Query: 707 IALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 LN+LSNA+ + G I I S + V DTG+G+ L + +PF ++ Sbjct: 860 ALLNLLSNAVKYNRERGSIQIDVEQQLTASGLRQRICVADTGIGIAPQRLNEVFQPFTRL 919 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 ++ EG+G+GL + K +V+ G+ S G+ I P + H HD Sbjct: 920 -LAENSEIEGSGIGLTITKRLVELMGGEIAAESEIGVGSRFWIDLPAGTSVH-HD 972 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 37/332 (11%), Positives = 97/332 (29%), Gaps = 23/332 (6%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGN 340 + + L ++ + N + F E D+ + + Sbjct: 7 LPWDETFDTGLPEVDEQHRRLVQLINVLASHVAFRTHIPQLEEMFDELADYAVYHFRTEE 66 Query: 341 LFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + ++ +S L P L R + I S R Sbjct: 67 AVWHEHLAGDQSEVDHQAIHASFVQEVSRLRGQPDGQRAAEETLAFLARWLISHILESDR 126 Query: 400 LHT---------IQWNRENSLAMTFIPFEKANQFPENMPQNGI--------EPEDVDTRI 442 + + A + + N E + R Sbjct: 127 YMACTTLALRAGLSREAARAHASAEMARGARRFADIVLSINATPVTNALHLMAELAELRR 186 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + ++ E + ++L + SDG+ +++ G ++ + + + GY E+++ Sbjct: 187 AQTELRHESEKNRALLRSASDGVHVLDTTGNLVEVSDSFCAMLGYSREELIGSNMAGRDA 246 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHD 560 + L + L R+ L T ++ +L+ + + + + D Sbjct: 247 RFADDDGPSRLRQELDSPQRRVLH--TRYRHRDGRLIPVDVSGVPVLIEGQRLLFYSARD 304 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++E K+ + +L+ ++ + S + + Sbjct: 305 VTERKRAEEELALERQRLADQLRFTSQLIDTI 336 >gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium violaceum ATCC 12472] Length = 1748 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 130/775 (16%), Positives = 260/775 (33%), Gaps = 52/775 (6%) Query: 82 TVRFT---WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 V F W+ D + + G + GMR+ D+ N + + Sbjct: 504 AVPFIIGYWDCDQINRV--ANHAYRTWFGIDPGALPGMRMRDLLGEPLYQANLPHIEAVL 561 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + +G + + R F + IV + R+ Sbjct: 562 GGEPQVFERQICGQDGVVRHSLTTYLPDLVNDEVRGF-----YAIVQDISEQVESRSRLT 616 Query: 199 RLDKKFSHLHEIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 K+ L + + I + + L + + Sbjct: 617 SALKERELLLDTINQQLLYTATDTDGRILEANDLFCQVHGYERKELLGWDHRKLSAGVHP 676 Query: 257 E--KYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L + S + + T Q +S Y++ R + Sbjct: 677 AMFWQSLWRTIASGRVWRGEVCNQTREGRQRWFDTVIVPHAGDSGRIERYIALRIDITER 736 Query: 313 AYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 D + HG + N + Y + + A L Sbjct: 737 KLADAELARVHGMLSNVLRAASEVAIIAADVHGVVSLFNSGAQRMLGYSENEMVGRA-ML 795 Query: 367 STLLDAPKLSDNNAI---------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + +L ++ + + + A R T + L ++ + Sbjct: 796 THFHLPEELREHGEALSQRYERQVEGLRALVQEPEASGAETREWTYVRKDGSQLQVSLMV 855 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + I + + +R++ QL E G+ + L Sbjct: 856 TAMRDADELVVGYLAIAADITIPQRQQRELVAARDQLQLAAEVAQLGVWSWSPADNQLRW 915 Query: 478 NRAVSKLFGYPVE----DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 N + +++ P E + + + + + + L +L Sbjct: 916 NAQMFEIYRQPPELAERGLEYRHWRERVHPDDVDSVEADLRALLERGEAMDRVFRVRLPD 975 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 E + + + +++ + DI+E + + L AK+ AE+ S KS FLA +S Sbjct: 976 GEMRYVQVGARLERHGDGVRVTGINRDITETRAYEQNLLEAKRQAEEASMVKSQFLANMS 1035 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ A++G +++++ R + R ++Y I + +L ++ND+LD SKI++G Sbjct: 1036 HEIRTPMNAVLGLLQLMQHTRL----DERQLDYVGKIQAAAKSLLGLLNDILDFSKIDAG 1091 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712 K+ L P L+ + E ++ N+K + + +P ++ D ++QI +N+ Sbjct: 1092 KLQLDLHPFDLEGLMRELAVVLSGNTNDKDVEVLFRMEPTLPAMLIGDKLRLQQILINLA 1151 Query: 713 SNAIHFTPSGGQII-ISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT G ++ + EV + V DTG+G+ +L + + F Q S Sbjct: 1152 GNALKFTTQGQVVLAVRERARREGEVELRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTR 1211 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--------PLYDTSHP 816 R GTGLGL +++ +V+ G+ + S G+ PL P Sbjct: 1212 RFGGTGLGLVISRRLVELMGGQLRVESQLGCGSRFWFDLTLGMAADQPLAQLPEP 1266 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 50/539 (9%), Positives = 145/539 (26%), Gaps = 58/539 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTL 149 G + + + G A + +G L + + + + + + + +T Sbjct: 370 DGVVTSWNLSAERLFGYRADEAVGQPLAKLIVPEDRRGEEVDILRRIARGERIEHFETVR 429 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------D 201 +G+ L V + ++ P+ G ++ +A + L Sbjct: 430 MRKDGSLLIVSVSIS--PVLDEAGRVVGASK--VLRDLSEQKRIKAELQVLSENLEQRVA 485 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------------SLTEYY 247 + + L + + +V I R+ N + + Sbjct: 486 DRTAELDQAWRTLQTVLDAVPFIIGYWDCDQINRVANHAYRTWFGIDPGALPGMRMRDLL 545 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SH 305 + E + E++ + +++ Y L N+ F + Sbjct: 546 GEPLYQANLPHIEAVLGGEPQVFERQICGQDGVVRHSLTTYLPDLVNDEVRGFYAIVQDI 605 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + +D + G + AN F + Y+ + + Sbjct: 606 SEQVESRSRLTSALKERELLLDTINQQLLYTATDTDGRILEANDLFCQVHGYERKELL-- 663 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G + + + + + T + A Sbjct: 664 --GWDHRKLSAGVHPAMFWQSLWRTIASGRVWRGEVCNQT---REGRQRWFDTVIVPHAG 718 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAV 481 + + + ++ ++ L ++L A S+ I + G++ N Sbjct: 719 DSGRIERYIALRIDITERKLADAELARVHGMLSNVLRAASEVAIIAADVHGVVSLFNSGA 778 Query: 482 SKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTE------------ILSLDLRQTLEKI 528 ++ GY +++ + L++ + + + Sbjct: 779 QRMLGYSENEMVGRAMLTHFHLPEELREHGEALSQRYERQVEGLRALVQEPEASGAETRE 838 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K+ L + +++ + + Y DI+ ++++ +L A+ + + Sbjct: 839 WTYVRKDGSQLQVSLMVTAMRDADELVVGYLAIAADITIPQRQQRELVAARDQLQLAAE 897 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 59/420 (14%), Positives = 123/420 (29%), Gaps = 38/420 (9%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 EF G GFG RV A R +++ + E E+ I + P + Sbjct: 106 EFPGLLGFGYAR--RVPPQRVAEFVRQERRDGEPGFSIRQLRPHEGERAVIVYFEPEPGN 163 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + + + L+ + +P ED L T Sbjct: 164 RFVIGVDIASEPSRRAAAEAALRSGQARLSEPIALMPHPEDKAQAFLLLLPVYAGGATPA 223 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + P ++ + P V + + Sbjct: 224 SEEGRLRAGFGWVFAPI------RAQDAMAGLMADLP-GVAVELAD-VTDGRKAVFFQGG 275 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 I A L L + L A +SL + Sbjct: 276 SNPAQPIAAASELQPLF----------GRDWRLSLRAGPAFA-------------DSLKL 312 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 ++ ++ + R +R++ +L +I+E + D I +G+ Sbjct: 313 PSAALVASSGLAASVLSALLALVVGRNRQRRRELLAAQSRLAAIVEGSVDAIISKTLDGV 372 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + S N + +LFGY ++ + +P + + ++ + T+ Sbjct: 373 VTSWNLSAERLFGYRADEAVGQPLAKLIVPEDRRGEEVDILRRIARG-ERIEHFETVRMR 431 Query: 534 KEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ LL + + I + + + + D+SE K+ K +L + E+ + ++ L Sbjct: 432 KDGSLLIVSVSISPVLDEAGRVVGASKVLRDLSEQKRIKAELQVLSENLEQRVADRTAEL 491 >gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1562 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 131/848 (15%), Positives = 278/848 (32%), Gaps = 107/848 (12%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 + + + + + T + W++ E E + Sbjct: 269 DITAEKEARQATQELTERLRLATEAAELG--------------IWDLRISDGYLEWDEGM 314 Query: 103 PKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYV 159 + G D + + + Q + + + +G ++ Sbjct: 315 FRIYGVSRDDFTNSVKDWTDALLPEYREQAEQDFKAGIAGQGAYRSEFKIRRKDGEIRHI 374 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 A I+ R GI ++ S + ++ Sbjct: 375 R--AMAQSIHDETGNPV--RVVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGIS 430 Query: 220 EKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276 + V + + + + + E Sbjct: 431 SDGTCNYVNPAGEKVTGYSAQELVGKDWWSTLYPGSSYEQVRQLFQDMQNGPVQNHEMTL 490 Query: 277 -TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK------- 328 + ++ + + + E + + + +E + ++K Sbjct: 491 TRKDGHERIVEWNSLNRLDQEENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEG 550 Query: 329 -----CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + G + N ++ + Y +++I + L P+ + Sbjct: 551 FFDVTLGLLMIADFQGRILKLNRAWEDILGY-PLNEIARSNLLD--FVHPRDQEKTREAM 607 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L R + ++ Q + + + + + ++ + Sbjct: 608 SSLSRGE----HVRDVVNRYQHKNGGYIWVRWQASSRE------GLIYASANDITESIML 657 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLE 502 + ++ E L I++++ + I + G N V++LFG E +L K + + Sbjct: 658 QERLAQEKDFLQQIIDSSPNPIFAKDWHGRHTLANTRVAELFGTTKEAMLGKTDYDMTAT 717 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLT 557 Q E++ ++ + + L + ++ + L P Sbjct: 718 QEEIQAFLQDDREVMQSGKQKHIPQEPLT-DSQGQVRWFQTTKVPLMLSHDPKKRQVMGI 776 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+ + ++++ A++ AE + KSDFLA +SHEIRTP+ A+IG Sbjct: 777 ATDITHRIESEHQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGL----SQLLLQT 832 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + R +Y N I S ++L I+ND+LD SKIE+GK+ L +DE + + +L Sbjct: 833 SLDDRQRDYLNKISNSSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGS 892 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST------- 729 A +K + I + + ++PRIL D + Q+ N+L NA+ FT G + ++ Sbjct: 893 TAEDKGLEIIFNISTDVPRILKGDSLRLGQVFTNLLGNAVKFTEKG-HVELAVHKSEVRS 951 Query: 730 ---THTSNE-------------------------------EVILRVRDTGVGMTNYELEK 755 ++ ++DTG+GM + ++++ Sbjct: 952 QESEVRDQGTEVRSQDLGQGTGDRGQGLEAADRDSESKIVRLLFEIKDTGIGMDDEQVQR 1011 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDT 813 +PF Q S + GTGLGL ++ +V G + STP +G+ EI P+ Sbjct: 1012 LFQPFSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEIDLPMAPE 1071 Query: 814 SH-PHDCI 820 S +CI Sbjct: 1072 SETTQECI 1079 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 71/532 (13%), Positives = 159/532 (29%), Gaps = 36/532 (6%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 DSE F D + W ID G ++ + +G +++G D Sbjct: 155 DSEQRFR-DVAEAAGEYIWEIDPGGTYSFLTPRVEDVLGRRVDEVLGRSPFDFMPHEEAR 213 Query: 129 PNNH-IGDLLKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + ++ +W G +G + ++ +P+ E GFRG G+ Sbjct: 214 RVEKMLAGWAEKGESWQGLEHQSVRPDGRI--IWQRVSGMPVKDSEGELKGFRGTGL--D 269 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSS 242 + + R + L ++ E + + R S Sbjct: 270 ITAEKEARQATQELTERLRLATEAAELGIWDLRISDGYLEWDEGMFRIYGVSRDDFTNSV 329 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESF 300 A + + + + +F + + ++ + + Sbjct: 330 KDWTDALLPEYREQAEQDFKAGIAGQGAYRSEFKIRRKDGEIRHIRAMAQSIHDETGNPV 389 Query: 301 EYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK 355 + + + + + + P + S G Y NP+ +T Y Sbjct: 390 RVVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGISSDGTCNYVNPAGEKVTGYS 449 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + STL ++ + V D T+ + + + Sbjct: 450 AQE-LVGKDWWSTLY------PGSSYEQVRQLFQDMQNGPVQNHEMTLTRKDGHERIVEW 502 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSDGIAII 468 + +Q + G + D RI + ++E +L + T + I Sbjct: 503 NSLNRLDQEENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEGFFDVTLGLLMIA 562 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + +G IL NRA + GYP+ +I R F+ ++ + + + + Sbjct: 563 DFQGRILKLNRAWEDILGYPLNEIARSNLLDFVHPRDQEKTREAMSSLSRGE--HVRDVV 620 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 K + +R + +DI+E + +L+ K ++ Sbjct: 621 NRYQHKNGGYIWVRWQAS--SREGLIYASANDITESIMLQERLAQEKDFLQQ 670 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 26/291 (8%), Positives = 84/291 (28%), Gaps = 15/291 (5%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 ++ E + + + + G + P + + + + + Sbjct: 148 RNEKRLEDSEQRFRDVAEAAGEYIWEIDPGGTYSFLTPRVEDVLGRRVDEVLGRSP---- 203 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 D + ++ ++ +++ +++ + + + E Sbjct: 204 -FDFMPHEEARRVEKMLAGWAEKGESWQGLEHQSVRPDG-RIIWQRVSGMPVKDSEGELK 261 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 G + + ++ + +L EA GI + L + + +++G Sbjct: 262 GFRGTGLDITAEKEARQATQELTERLRLATEAAELGIWDLRISDGYLEWDEGMFRIYGVS 321 Query: 489 VEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +D K +T L ++ E K+ ++ +R + + Sbjct: 322 RDDFTNSVKDWTDALLPEYREQAEQDFKAGIAGQGAYRSEFKI--RRKDGEIRHIRAMAQ 379 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + DI+E K + +L + + + + +S Sbjct: 380 SIHDETGNPVRVVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGIS 430 >gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 123/690 (17%), Positives = 251/690 (36%), Gaps = 25/690 (3%) Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++P EG + +DL P+ R I + AL R+ Sbjct: 109 IRYVYPREGNEEALGMDLYNHPVQGAATRRMMEAGTMVIAGPVTLVQGGEALIVRIPIFH 168 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLT 263 + + ++ + + D+ +++ +L + + P L Sbjct: 169 ENQADGRRAYWGMTSIPVDLDGFYQRVGLQETASRLQIALRGHDGLGAEGEVFFGDPNLF 228 Query: 264 SEESSLPEQEDFHTINLNQ---------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + E + + ++ L L + Sbjct: 229 AAEPVIQRVDLLAGSWQLAGKPPGGWQVPWSQRLPWLLGGLLGALLVGLVGGKLTAQRER 288 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E V+ + G + + N L Y + + + S + Sbjct: 289 LRHSEAGYRELVENVNSIVLRWRADGTITFINEYGARLFGYTPGELVGRSVVGS--IVPE 346 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 S + +M+ + I + +++ + + I Sbjct: 347 TESSGRDLAAMMVDIAQHPENYHDNENENICLDGSRP-WISWNNRAVRDNGGATVEVLSI 405 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKLFGYPVED 491 + R + ++ + +++ + E + + + + GYP + Sbjct: 406 GRDHTQRRRIELALKNSERRFRTMVGHIYGAVYRCLPESPWAVEFVSEPIGDITGYPARE 465 Query: 492 IL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + R+ + + H +++ ++ LE + + + E+ + R Sbjct: 466 FMEGRRNLEEIIHPAERDRIAHEVSQAVAEGRPYVLEYRIINNERVERWVHERGQAVVDE 525 Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + + DI+ K+E+ +L A+ A+ + KS+FLA +SHE+RTPL AIIG+SE Sbjct: 526 DGVTWLDGVIFDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSE 585 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + G E I + +L ++N++LD SK ESG+++L E LDE + Sbjct: 586 ILLEEA-EEHGLEGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELL 644 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + +++ E+ + + I D ++QI N+LSNA FT G I + Sbjct: 645 AAVVDIIRPLLPERENRLLVEAEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGF-ITLR 703 Query: 729 TTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T E V + ++DTG+G++ + +K KPF Q +S R GTGLGL +++ Sbjct: 704 TRRLMRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFC 763 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + STP +G+ + P+ + Sbjct: 764 RMMGGDIALVSTPGQGSTFTVSLPVSPDNQ 793 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 43/392 (10%), Positives = 97/392 (24%), Gaps = 31/392 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQN 141 W A G + I+E + G +++G + + ++ +N Sbjct: 310 WR--ADGTITFINEYGARLFGYTPGELVGRSVVGSIVPETESSGRDLAAMMVDIAQHPEN 367 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + ++G+ I + G + K + Sbjct: 368 YHDNENENICLDGS--RPWISWNNRAVRDNGGATVEVLSIG--RDHTQRRRIELALKNSE 423 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++F + G +SP + + +T Y A + + + Sbjct: 424 RRFRTMVGHIYGAVY-------RCLPESPWAVEFVSEPIGDITGYPAREFMEGRRNLEEI 476 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E E + + + N E + + + + Sbjct: 477 IHPAERDRIAHEVSQAV-AEGRPYVLEYRIINNERVERWVHERGQAVVDEDGVTWLDGVI 535 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 T K V + AN + FL ++ + G S +L Sbjct: 536 FDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHG 595 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R ++ + + + E+ + I + Sbjct: 596 LEGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLL 655 Query: 439 DTRINKRKMEIEVM---------QLCSILEAT 461 R N+ +E E +L IL Sbjct: 656 PERENRLLVEAEEELGTIRTDGTRLRQILYNL 687 >gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1296 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 136/736 (18%), Positives = 270/736 (36%), Gaps = 41/736 (5%) Query: 98 ISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGKTTLWPI 152 I+E +G ++ + D+ +D + K + + L Sbjct: 167 INEYYANALGYSYDELKQLSLTKWSDLVHPEDMDVMTNFFDNQKDKPVIHYEFEIRLKHK 226 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 EG ++ + + ++ GI+ R + I K Sbjct: 227 EGH--WIWVLNNGRVEGLKPGLMPIYQS-GIILEISERKKAEKELDRTKALLLQTNSITK 283 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + + + V L ++ E S + Sbjct: 284 TGGWSWNLITGEIEWTENTRSICEVEENYQPSYEGVFDFVVDSARVENLKSTLEESFQKH 343 Query: 273 EDF------HTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEGENLTP 323 + F + N + + ++ + + + E Sbjct: 344 QQFDLELQVRSGKGNVFWARIIGIPEISDNKVQRLYGTIQNIDDQKKNEFQLQEKTKQYN 403 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 E V+ PI + + +G L Y +P F + +E + + + Sbjct: 404 ELVENIPIGVYKLNRNGELNYMSPPFKKMIG------VEGRDIDTNDFAHDIVHPEDLEL 457 Query: 383 PV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + + + + T P + + G + + Sbjct: 458 FLKANNYALDNYQYFNLEFRIVVKGQTKWVKATSQPSKDLDGN---WYWFGTLSDITQRK 514 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500 + K++ QL +I+ + ++ + + +GII S N + +K+ +++ K Sbjct: 515 NTELKVQENERQLQNIISSMNEALLFYDSKGIIRSMNDSAAKILELDKFEVVGKRLMSTP 574 Query: 501 -----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSC 553 + N S H + L + L +TK EK + + I + + Sbjct: 575 IKLLDVNGNFISAEQHPVAIALEEKKSLNDVTVQLLNTKTEKTIWIAANIKIIEEEDAQW 634 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +T +DIS + + +L AKK AE + KS FLA +SHEIRTPL +IGFS++++ Sbjct: 635 ALVTFNDISNRVKSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVIGFSDLLRKT 694 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 L +Y +I S + +L I+ND+LD SKIE+GK+ L E ++ E V A+S Sbjct: 695 NLNIL----QTDYTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGLELVESAVS 750 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A++K + + + ++P AD ++QI +N+L NA+ FT SG + T Sbjct: 751 FITFQASQKNLELLIEYDPDVPIYFEADELRLRQILINLLGNAVKFTESGNIALKVTKLH 810 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 +++ V DTG+G++ + + + F Q S + G+GLGL ++ ++ + Sbjct: 811 KEDKLKFEVIDTGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNKLLKMMQSRL 870 Query: 793 YIFSTPAKGTLIEIIF 808 ++ S KG+ Sbjct: 871 HLESEVNKGSNFSFSI 886 >gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris DX-1] Length = 1157 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 111/665 (16%), Positives = 230/665 (34%), Gaps = 42/665 (6%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + + L +I + + + F + V Sbjct: 224 VYRSGDPIATEEQRRRALIGWAFTAIDIYQILADLHSATG-AFGFTLTDDGGAPFHTVGR 282 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + + T ++++L S Sbjct: 283 PQDVGMSLPAREISFAIYGRTWHIQIWALPPFVNSLSLPSPWLGFTVTLALGFLLTSLVN 342 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 L A D + + S G + N + L Y + + I Sbjct: 343 LQISYKAR-RAEHDIARSRLAAIFESSNDAIIAKSVDGTVVDWNKAAERLFGYSAEEAIG 401 Query: 362 IA-----------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + + + + + + + I+ + Sbjct: 402 RPTTELIVPESLWDEENRIFADIRDGQKVSHFRTKRNKRNGDPVDVAVSVSPIRCEDGS- 460 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAII 468 L + ++ ++ +R ++E +ILE + + Sbjct: 461 LIGIATAARDITDLVAAEHKIRNLNAWLERQVAERTAQLEKTLTLQSAILERAAYAVIAT 520 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTE------------ 515 + G I N A ++ GY ED++ + + L + Sbjct: 521 DVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDPDELAARADALRQEGVDVGSNLGVL 580 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 L + E + +R+ + +L D++E + +N+L Sbjct: 581 RARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIAVDLTEQLKYENEL 640 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ AEK + K++FLA +SHEIRTPL IIG+++++ + L R I Sbjct: 641 KAARASAEKAGAAKANFLANMSHEIRTPLNGIIGYADLVLEDQTLALDTRRQ---VIRIF 697 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + + + I++D+LD SKIE+ + L +P+ +++ + +S++Q A +K + +R Sbjct: 698 EASDSLRVIIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSIIQRKAEKKGLELRVDAQ 757 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGM 748 ++ D ++Q+ LN+L+NA+ FT +G + + + + V DTG+G+ Sbjct: 758 EIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVELNVACLSRVGDRARLRITVTDTGIGI 817 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEI 806 + + + K F Q + + GTGLGL +++ +V A G+ I S P +G+ EI Sbjct: 818 SAQDQKGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMGGEIGIDSAPGRGSTFYFEI 877 Query: 807 IFPLY 811 P+ Sbjct: 878 ELPIA 882 Score = 99.7 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 52/499 (10%), Positives = 126/499 (25%), Gaps = 46/499 (9%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-----KTTLW 150 S L + + + V+ + L ++ + + Sbjct: 36 TVASALLSALVAYGVAE---QNVRTVARKFDALAADLTDQLEDNLGSYRFGLLAARGVVV 92 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G ++ REF G RGFG V + + +R Sbjct: 93 ASGGESISFDTFHRYAETRDFLREFPGARGFGFVRPVEPQDVAAFVAQRRAGGQPTYKVS 152 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + + + S + A E E + Sbjct: 153 QLAPHDGTRYLVTYLEPSHINAVAYGIDLASESSRKTAADAAAATGEATMTAPIELLPIS 212 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + I L Y T + + + Sbjct: 213 GMDSGVLILLPVYRSGDPIATEEQRRRALIGWAFTAIDIYQILADLHSATGA-------- 264 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 F + G + + + L A ++S + + Sbjct: 265 FGFTLTDDGGAPFHT--------------VGRPQDVGMSLPAREISFAIYGRTWHIQIWA 310 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 ++ W + + + + + +I Sbjct: 311 LPPF-VNSLSLPSPWLGFTVTL------------ALGFLLTSLVNLQISYKARRAEHDIA 357 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVM 509 +L +I E+++D I + +G ++ N+A +LFGY E+ + +P T + + Sbjct: 358 RSRLAAIFESSNDAIIAKSVDGTVVDWNKAAERLFGYSAEEAIGRPTTELIVPESLWDEE 417 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567 N +I + +++ + + S + DI++ Sbjct: 418 NRIFADIRDGQKVSHFRTKRNKRNGDPVDVAVSVSPIRCEDGSLIGIATAARDITDLVAA 477 Query: 568 KNKLSHAKKIAEKESSHKS 586 ++K+ + E++ + ++ Sbjct: 478 EHKIRNLNAWLERQVAERT 496 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 21/258 (8%), Positives = 50/258 (19%), Gaps = 21/258 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150 G + + ++ + G A + IG ++ + D N I ++ T Sbjct: 378 DGTVVDWNKAAERLFGYSAEEAIGRPTTELIVPESLWDEENRIFADIRDGQKVSHFRTKR 437 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-------------------IVHVNRVDN 191 + V + ++ PI + G + Sbjct: 438 NKRNGD-PVDVAVSVSPIRCEDGSLIGIATAARDITDLVAAEHKIRNLNAWLERQVAERT 496 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 L + V ++ + T H Sbjct: 497 AQLEKTLTLQSAILERAAYAVIATDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDP 556 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 D L L + + L+ + Sbjct: 557 DELAARADALRQEGVDVGSNLGVLRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTK 616 Query: 312 SAYFDEGENLTPETVDKC 329 + + ++ Sbjct: 617 DGTDLGVLGIAVDLTEQL 634 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 34/304 (11%), Positives = 74/304 (24%), Gaps = 37/304 (12%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 R D G + + + +G A +IG + D D L++ Sbjct: 511 ERAAYAVIATDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFH--DPDELAARADALRQ 568 Query: 140 QNTWYG---------------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + G T +W I +P+ L + +++ G G + Sbjct: 569 EGVDVGSNLGVLRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIAV 628 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 K K + ++P + + Sbjct: 629 --DLTEQLKYENELKAARASAEKAGAAKANFLANMSH-----EIRTPLNGIIGYADLVLE 681 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF-----------GTL 292 + A + S + + DF I T + + Sbjct: 682 DQTLALDTRRQVIRIFEASDSLRVIIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSII 741 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352 Q +++ L + +G L ++ G++ N + L Sbjct: 742 QRKAEKKGLELRVDAQEIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVEL-NVACLSRV 800 Query: 353 KYKS 356 ++ Sbjct: 801 GDRA 804 >gi|20090134|ref|NP_616209.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915115|gb|AAM04689.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1456 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 101/724 (13%), Positives = 237/724 (32%), Gaps = 34/724 (4%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPI 152 S+E+ + G + + ++ + + T+ + Sbjct: 744 LFWSDEIYRIFGFRPQEFCATYDSFLSYVHPEDRVLVDDAVKEAF-NGKTYSIDHRIIRA 802 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G + + ++ RE + G V + K L E Sbjct: 803 DG-KERIVHEQ-GEVVFD--RENVPVQMKGTVQDVTERKLAEKTLELASKYNRSLIEASL 858 Query: 213 GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 I S + + Y + + K + Sbjct: 859 DPLVTIGADGKITDVNSSTETITGYSRDELIGTDFSDYFTEPEKAKEGYRHVFQKGLVRD 918 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E H + + ++ E + + +E V+ Sbjct: 919 YPLEVLHR-DRHITHVLYNASVYRDEIGEVIGVFAAARDITELKKAEEKIKTLVSAVESS 977 Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 S G + N + Y + + + + L+ L + + Sbjct: 978 DDAVITMSLDGMITSWNKGAERVYGYPAEEILGKKMSV---LEPANLKGEIKQLIERIKQ 1034 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + + RL + ++ + + + + I + + + + + Sbjct: 1035 GEGINHYETVRL----KKDSTLVDISVALSPVFDDSGKIIALSAIARDITERKKAEEALR 1090 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + + S+LEA+ D + I +G I N+A ++ GY +++ FT + + P Sbjct: 1091 LSNIYNRSLLEASLDPLVTIGPDGKITDVNKATEQITGYSRGELIGTDFTNYFTE--PEK 1148 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 ++ + I + D++E K+ Sbjct: 1149 AKEGYQQVFRKGAVLDYALEIQHRNGSVTPVLYNASIYRDESGQVIGVFAAARDVTELKK 1208 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L + + + F SH+++ PL I + ++++ + G L + R +Y Sbjct: 1209 AEKILELKLEELARSKADLEQFAYVSSHDLQEPLRMIASYLQLLQRRYQGEL-DERADKY 1267 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + + + ++NDLL+ S++ + FEP + ++ +S +++ E + Sbjct: 1268 IYFAVDGASRMQSLINDLLEFSRVTTKAR--EFEPTDCESILNYVLSDLEVSIKENEATV 1325 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTG 745 ++P I+AD + Q+ N++SNAI F + +I +S ++ V+D G Sbjct: 1326 SYD---SLPEIMADGTQLTQVFQNLISNAIKFRSKEAPKIHVSAEKEDDKW-RFSVQDNG 1381 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ EK + F ++ + GTG+GL + K +++ + G ++ S P +G+ Sbjct: 1382 IGINPKYSEKIFEVFKRLHK--REEYPGTGIGLSICKKIIERHGGDIWVKSEPGRGSTFY 1439 Query: 806 IIFP 809 P Sbjct: 1440 FTLP 1443 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 63/561 (11%), Positives = 162/561 (28%), Gaps = 69/561 (12%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFD--PIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 + + + + + + + FD P + +D + + + +G Sbjct: 190 EQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAI-----LDTEYRIVRANRAMAAKLGV 244 Query: 109 YAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 + +G+ D LLK + + + G ++ Sbjct: 245 TPEECVGLTCYHAIH--GTDEPPSFCPHRQLLKDELEHTTEVCEDCLGGC-----FLVSV 297 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 P+Y G + E Y+ Sbjct: 298 SPLYDSKGNLIG--SVHVARDITERKQTEETL---------------------FEAYENI 334 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 QS H + + + E +A ++++KT + + + + E N + Sbjct: 335 QVQSEELHAQAEELQAQNEELHAQAEELMKTNEALIESKKRF-----ELLSEANAFLLSS 389 Query: 286 KQYFGTLQNNSKESFEYL----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 K+ T+ ++ YL N + ++ + Sbjct: 390 KEPETTILTIAENVMRYLKCDVFFNYVFDRENGKLHLNACGGISAEAAKEIEWLDKGVAI 449 Query: 336 Y----SHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 G + + + + D+ + G+ P I + Sbjct: 450 CGCVARDGCRIV----AEDVQYNWDKRADLVRSMGIQAYACHPLHVGETTIGTLSFGTKS 505 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE---NMPQNGIEPEDVDTRINKRKM 447 R + S+A+ E+A + ++ + + + Sbjct: 506 RKDFKEDELALMKTVADQVSVAIERKRAEEALSEAYENLQVQSEELQAQSEELNEAYELL 565 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTP 506 + ++ E + D IA +R+ L N A ++ +G E+I+ K + ++ Sbjct: 566 RKSEKRFRTLAENSPDVIARFDRQNRHLYVNPAATEPYGRSPEEIIGKTNSELGMDPELV 625 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWK 565 + + + + + +E + + +E S RI+ + + + DI++ K Sbjct: 626 TFWEGHYQTVFASGKTEKMEFHYISPSGKEYYFSTRIVPEFVDGEVTSVLAISRDITDIK 685 Query: 566 QEKNKLSHAKKIAEKESSHKS 586 + + +L A+ +K ++ Sbjct: 686 EAEIELKEARDNLKKLVEKRT 706 Score = 94.7 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 34/377 (9%), Positives = 93/377 (24%), Gaps = 29/377 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I A G + +++ G ++IG D + ++ Sbjct: 864 IGADGKITDVNSSTETITGYSRDELIGTDFSDYFTEPEKAKEG-YRHVFQKGLVRDYPLE 922 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + +V + + E G F K L Sbjct: 923 VLHRDRHITHVLYNASV--YRDEIGEVIGV--FAAARDITELKKAEEKIKTLVSAVESSD 978 Query: 209 EI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + G + + + L K V +++ K Sbjct: 979 DAVITMSLDGMITSWNKGAERVYGYPAEEILGKKMSVLEPANLKGEIKQLIERIKQ---- 1034 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT- 322 E + + + ++S + + + +E L+ Sbjct: 1035 -GEGINHYETVRLKKDSTLVDISVALSPVFDDSGKIIALSAIARDITERKKAEEALRLSN 1093 Query: 323 ---PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ++ P + G + N + +T Y + I + P+ + Sbjct: 1094 IYNRSLLEASLDPLVTIGPDGKITDVNKATEQITGYSRGELIGT--DFTNYFTEPEKAKE 1151 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + A IQ + + + ++ + + + Sbjct: 1152 GYQQVFR-------KGAVLDYALEIQHRNGSVTPVLYNASIYRDESGQVIGVFAAARDVT 1204 Query: 439 DTRINKRKMEIEVMQLC 455 + + ++ +E+++ +L Sbjct: 1205 ELKKAEKILELKLEELA 1221 Score = 81.2 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 15/201 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E + + +A D IAI++ E I+ NRA++ G E+ + Sbjct: 193 ESSKRKRAEETALQAAKDWKYTFDAVPDLIAILDTEYRIVRANRAMAAKLGVTPEECVGL 252 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 + ++L +L T E + + + + Sbjct: 253 TCYHAIHGTDEPPSFCPHRQLLKDELEHTTE---VCEDCLGGCFLVSVSPLYDSKGNLIG 309 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI---RTPLTAIIGFSEVI 610 DI+E KQ + L A + +S+ L + E+ L A +E + Sbjct: 310 SVHVARDITERKQTEETLF----EAYENIQVQSEELHAQAEELQAQNEELHA---QAEEL 362 Query: 611 KNQRFGPLGNPRYIEYANYID 631 + + + E + + Sbjct: 363 MKTNEALIESKKRFELLSEAN 383 >gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 840 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 120/592 (20%), Positives = 224/592 (37%), Gaps = 34/592 (5%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 +V+ L + + + E E+ + +Q G +++ + Sbjct: 101 RRVTVLKADGVTPVKREEWPLVRTIATGEVVKEEELVILRPDGSQVPILCNAGPIRDEAG 160 Query: 298 ESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352 ++ L F E E D+ + + G N + + Sbjct: 161 NIRGGMLFWVDITTQKQLRDSFRESEERFRAIFDQAAVGMAQTAPDGRFLRVNAKYCEML 220 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y S +++ + ++ + V++ R I A + + + Sbjct: 221 GYSS-EELANLSIYDVIY-----PEDLEEERVLIQRLLDGDIPAYSLARRCYRKNKTIVW 274 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 E ++ + R + + + ++ E + D IA I R+ Sbjct: 275 TEVTASVVRKPSGEPDYVISVKVDISQRRKAEELLLRREQEYRNLAENSPDIIARIGRDM 334 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 L N A ++ G P I+ K + + S +T E Sbjct: 335 RYLYINPAGGRIRGAPPAHIIGKTVYQLGYTHEFSKRAEKRVARLFSTGKEETFEYEFSS 394 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 S ++ RI+ ++ S + DI++ K +++L AK+ AE+ + KS FL Sbjct: 395 SLTGSRIFQARIVPERDKHGDVESALIISRDITDLKLMESELKAAKEAAEEANRTKSQFL 454 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ IIG +E+ N Y +S +L I+ND+LD++K Sbjct: 455 ANMSHEIRTPMNGIIGMTEL----ALASCANVDCSTYLGMARKSARNLLGIINDILDLAK 510 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIA 708 IESGK+ + ++ + + L A K + N+P R+ D R + Q+ Sbjct: 511 IESGKVEIEEYAFDARASLEALFATMALDAERKGLRFDARIDANVPVRLKGDERRLLQVF 570 Query: 709 LNILSNAIHFTPSGGQIIIST------------THTSNEEVIL--RVRDTGVGMTNYELE 754 N++ NA+ FT GG I + + V L V DTG+G+ ++ Sbjct: 571 TNLIGNAVKFTLEGG-IAVKVLVADPVSLGLLESCPDPAAVCLFASVSDTGIGIPADQIG 629 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + + F Q+ ++ +GTGLGL ++K +V+ GK ++ S P KG+ Sbjct: 630 RIFESFAQVGGLAHLKFDGTGLGLSISKRLVELMGGKLWVESEPGKGSTFTF 681 Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 20/237 (8%), Positives = 59/237 (24%), Gaps = 7/237 (2%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 G ++ + + +G + ++ + + DV ++ + L + Sbjct: 202 QTAPDGRFLRVNAKYCEMLGYSSEELANLSIYDVIYPEDLEEERVLIQRLLDGDIPAYSL 261 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 V ++ A + + E + L R ++++ +L Sbjct: 262 ARRCYRKNKTIVWTEVTASVVRKPSGEPDYVISVKV--DISQRRKAEELLLRREQEYRNL 319 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYA---HKDDVLKTEKYPLL 262 E + +R + T Y H+ ++ L Sbjct: 320 AENSPDIIARIGRDMRYLYINPAGGRIRGAPPAHIIGKTVYQLGYTHEFSKRAEKRVARL 379 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 S + +F + + ++ + L + + Sbjct: 380 FSTGKEETFEYEFSSSLTGSRIFQARIVPERDKHGDVESALIISRDITDLKLMESEL 436 >gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1121 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/525 (20%), Positives = 201/525 (38%), Gaps = 21/525 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 S + L E T+D + S G + N + + ++ + I Sbjct: 256 SQLRYRQLLLEKTASEVRLKTTLDTAVDGIISIDSLGIIKEFNKAATKIFGWQEEEIINQ 315 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G L + N + T +H I + K + Sbjct: 316 HFG--ALFPQKYTDEFNRSLAAFRNTGEVTIAGTEREIHAINKTGHIFP--IRLGVGKVD 371 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRA 480 + G + + + ++ Q S+++ +++ + + A Sbjct: 372 IPDSDTLFVGFITDISTRKSLEETIKKSEKQFSSLIKNIPGASFRCLMDEHWTTIFVSDA 431 Query: 481 VSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + + G+ + K + + + + + E + L K+ Sbjct: 432 IYDVTGWSTSEFYSKTISFAKLVHPDDEENVASTIKEATNTRKSYKL--EYRLRHKDGHY 489 Query: 539 LSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + +I+ K + DIS+ + +++L AK AE K+ FLA +SH Sbjct: 490 VWVLENGSVILNKHGKPEWIDGVILDISQRVEMEDELRQAKAKAEASVESKASFLANMSH 549 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ AIIGFS+++ ++ + I +S +L ++ND+LD +K+E K Sbjct: 550 EIRTPMNAIIGFSDILLESEISGEN----KKHLSIISKSARSLLHLLNDILDSAKLEKNK 605 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713 + L +P L +V IS + L A K + + + ++ ++Q+ +NIL Sbjct: 606 LELDIQPFVLANSVDTVISTLWLQARNKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILG 665 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ FT G + ++ + ++ V D+G+G+ L PF Q S R G Sbjct: 666 NAVKFTEKG-HVTLNVLKLQDGKIRFSVTDSGIGIPEERLTHIFDPFTQADASMSRRFGG 724 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 TGLG ++K +V G+ ++ S G+ PL +T P D Sbjct: 725 TGLGTSISKQLVTLMGGQIHVTSEAEVGSCFFFDLPLTETEAPSD 769 Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats. Identities = 46/361 (12%), Positives = 98/361 (27%), Gaps = 30/361 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144 ID+ G +KE ++ K G ++I + + D N + Sbjct: 288 IDSLGIIKEFNKAATKIFGWQEEEIINQHFGALFPQKYTDEFNRSLAAFRNTGEVTIAGT 347 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + G + + + + I + F GF + K+ +K+ Sbjct: 348 EREIHAINKTGHIFPIRLGVGKVDIPDSDTLFVGF-----ITDISTRKSLEETIKKSEKQ 402 Query: 204 FSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 FS L + G S D + +K S + D+ Sbjct: 403 FSSLIKNIPGASFRCLMDEHWTTIFVSDAIYDVTGWSTSEFYSKTISFAKLVHPDDEENV 462 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 T+ S + + + + + N + S Sbjct: 463 ASTIKEATNTRKSYKLEYRLRHKDGHYVWVLENGSVILNKHGKPEWIDGVILDISQRVEM 522 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 ++ + + SFL ++ + G S +L ++ Sbjct: 523 EDELRQAKAKAEAS------------VESKASFLANMSHEIRTPMNAIIGFSDILLESEI 570 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 S N ++ +S R+ + + +N L + PF AN + ++ Sbjct: 571 SGENKKHLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQA 630 Query: 436 E 436 Sbjct: 631 R 631 >gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1433 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 138/845 (16%), Positives = 269/845 (31%), Gaps = 79/845 (9%) Query: 22 TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81 + +L +++ D E K++ E + + + +S +F Sbjct: 305 SAELRRQQADQSLEALKNELEKKVAERTAALEDSQARLDRLSENL-----PGMIF----- 354 Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLK 138 R+ D +S + ++ + I L Sbjct: 355 --RYLTRPDGTDAFLYVSPRCRELFEVEPEAVLSQTIHPFSFIHPEDRPKVQARIARCLA 412 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + +T + + +A+L + N E G++ K Sbjct: 413 QNSTICEENFQIITPSGDQKYLQAVASL-FHQPNGEVI---WDGLMLDISKIQRAEIALK 468 Query: 199 RL---------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN----------- 238 L F L V Sbjct: 469 TLVAGTATATGANFFRELARCTATALKVPYVLVTERIGNCLETLGFWAEGMLQPKLNYEI 528 Query: 239 ---------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 +V + E + + +++ + L Q + L++ Sbjct: 529 SQTPCEVSLREGSLCQVRGVKEAFPNDPHLIEMQADGYLGVALKDAQGQAIGNLCILDRQ 588 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NL 341 + Q + + + ++ P FV Sbjct: 589 PLRHVELAEQILQVFAARAGVELERQQAELEVRQTQRFLDSIIENLPNMVFVKDAQFLRF 648 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 N + L Y D + A + + +L + IA Sbjct: 649 VRFNKAGEELLGYVREDLLGKNDY--DFFPAQEADFFVSKDREVLATGNLLDIAEE---- 702 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 IQ + + N + GI + + R + + +L LE + Sbjct: 703 QIQTRTGETRLLHTKKIPILNDAGQPQYLLGISEDITEYRQAELALRESETRLRLALEVS 762 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + E ++ A + + + ++ Sbjct: 763 QAIAWERDLEADLVYFTGA---MTLPVPATLSFAELLGLIHPLDREAFQRAHQTAIANRG 819 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 +E + + ++ + ++ DIS+ KQ + +L AK+ Sbjct: 820 SFQIEHRIRVADAAQTWRWYQVQASVITDANNQPIRLIGMSFDISDRKQAEAELLQAKET 879 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K DFLA +SHEIRTP+ A+IG + ++ N P +Y I +G + Sbjct: 880 AEAATRAKGDFLATMSHEIRTPMNAVIGMTGLLLNTPLSP----EQRQYGETIRNAGESL 935 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++ND+LD S+IESG ++L P L V+E I L+ A EK + + +P + Sbjct: 936 LSVINDILDFSRIESGHLDLEEHPFELPHCVAEVIDLLANRAVEKSLHLEVQIDPGVPAV 995 Query: 698 -LADLRSVKQIALNILSNAIHFTPSGGQ-III-STTHTSNEE---VILRVRDTGVGMTNY 751 +AD ++QI +N+++NA+ FT G I + S + + + + V+DTG+G+ Sbjct: 996 IVADSARLRQILVNLVANALKFTDQGEVMIRVKSVAVSPDGQQQTLEFSVQDTGIGIAPK 1055 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +LE +PF Q+ +S R G+GLGL ++K + + G+ + S G+ P+ Sbjct: 1056 QLEHLFQPFSQVDSSSTRRYGGSGLGLVISKRLCERMGGQIRVQSRAGVGSTFSFTLPVR 1115 Query: 812 DTSHP 816 + P Sbjct: 1116 VSLTP 1120 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 41/430 (9%), Positives = 100/430 (23%), Gaps = 45/430 (10%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V + L + + + + ++ + + + +S++ Sbjct: 40 RPTCVLVCQQERLVGLFTVQDAVRLMVQEYPWQTASIGEVMAPAIAVLKIDDNHDLSAIR 99 Query: 245 EY-YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEY 302 + H+ L + + T+ Q Q + Sbjct: 100 QLFQRHRLTHLAVVAAEDRPVGVLLECDLKALGKAEATFQTQAVQVQHQFQQELNRYQKA 159 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + + GE+ P V+ V L + + Sbjct: 160 ETTLRQIVQGTATETGEDFFPALVENLATVLGVRHVLVSELRGDQMYTLAFWSNHQQ--Q 217 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--------------E 408 +LL+ A + + +A + ++ + Sbjct: 218 PNIAYSLLEGACCRRAVAEGTYCISSGVQQTYPGNAIMQSLNADSYLGVALTAPGGKVLG 277 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------------------RKMEI 449 + P + R +E Sbjct: 278 TLCIIDDKPLVDPVWAESLLRMFADRASAELRRQQADQSLEALKNELEKKVAERTAALED 337 Query: 450 EVMQLCSILEATSDGIA--IINREGI--ILSTNRAVSKLFGYPVEDILRKPFTV--FLEQ 503 +L + E I + +G L + +LF E +L + F+ Sbjct: 338 SQARLDRLSENLPGMIFRYLTRPDGTDAFLYVSPRCRELFEVEPEAVLSQTIHPFSFIHP 397 Query: 504 NTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDI 561 + + L+ + E + + ++K L + P M DI Sbjct: 398 EDRPKVQARIARCLAQNSTICEENFQIITPSGDQKYLQAVASLFHQPNGEVIWDGLMLDI 457 Query: 562 SEWKQEKNKL 571 S+ ++ + L Sbjct: 458 SKIQRAEIAL 467 >gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 873 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 98/501 (19%), Positives = 199/501 (39%), Gaps = 25/501 (4%) Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E + P+ + ++ N + Y + + + L A Sbjct: 12 PSSEARLRTLFELAPLGIVIIDPESMLPLEFNRAAHEQLGYSAEE-------FARLRIAD 64 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ + ++ T + + + I Sbjct: 65 YEANEDPEDVQRHVQALLTQGYDDFETRHRCRDGSFRHVNVLVQVLPVDGRRM---FYAI 121 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + ++R+ + ++ + + E G+A+I +G L N+A+ ++ GY ++L Sbjct: 122 YRDITESRLAEERLRRSEAKFRAAFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELL 181 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + F + YL +++S ++ ++ + + + + + + Sbjct: 182 VRDFQSISHPEDLAADLVYLEQLVS-GATDRIQFEKRYLHRQGQPIPVMLSVSAVRDEWG 240 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + D++E K + + A + AE + KS+FLA +SHEIRTPL AIIG ++ Sbjct: 241 RLSRMVAHVLDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEIRTPLNAIIGLGQL 300 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + R +Y N I + + +L I+ND+LD SKIE+G++ L ++ + Sbjct: 301 LLDSGL----DSRQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVLD 356 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG-GQIII 727 + +L L A K + + P++ D + Q+ N++ NA+ FT G ++ I Sbjct: 357 QLTALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNAVKFTERGFVELRI 416 Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ VRDTG+GM +E + F Q S R GTGLGL +++ + Sbjct: 417 RALREDQGQIQLAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYGGTGLGLSISRQLA 476 Query: 786 DANMGKFYIFSTPAKGTLIEI 806 G + S G++ Sbjct: 477 QLMGGDIRVRSRLGIGSVFRF 497 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 42/358 (11%), Positives = 92/358 (25%), Gaps = 32/358 (8%) Query: 89 IDAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID L E + + +G A + +R+ D + L Q +T Sbjct: 32 IDPESMLPLEFNRAAHEQLGYSAEEFARLRIADYEANEDPEDVQRHVQALLTQGYDDFET 91 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ +V + + LP+ G R F I +R + KF Sbjct: 92 RHRCRDGSFRHVNVLVQVLPV-------DGRRMFYAIYRDITESRLAEERLRRSEAKFRA 144 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE--KYPL 261 EI ++ + + +H +D+ L Sbjct: 145 AFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELLVRDFQSISHPEDLAADLVYLEQL 204 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 ++ + ++ + +++ ++H + +E Sbjct: 205 VSGATDRIQFEKRYLHRQGQPIPVMLSVSAVRDEWGRLSRMVAHVLDLTERKASEEAMRQ 264 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ET + AN + FL ++ + GL LL L Sbjct: 265 AMETAE---------------VANRAKSEFLANMSHEIRTPLNAIIGLGQLLLDSGLDSR 309 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + + + + + F + + E Sbjct: 310 QRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVLDQLTALFSLAAE 367 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 41/420 (9%), Positives = 98/420 (23%), Gaps = 57/420 (13%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTT 148 G+ ++++ L + +G +++ +S + + + L T + Sbjct: 158 PDGHWLQVNQALCRILGYDESELLVRDFQSISHPEDLAADLVYLEQLVSGATDRIQFEKR 217 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G +P+ L+ + S R V ++ + + Sbjct: 218 YLHRQG--QPIPVMLSVSAVRDEWGRLS--RMVAHVLDLTERKASEEAMRQAMETAEVAN 273 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-LLTSEES 267 K + + P + L + K + Sbjct: 274 RAKSEFLANMSHEIR-------TPLNAIIGLGQLLLDSGLDSRQRDYMNKIRQGSDALLR 326 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 L + D+ I Q ++ + S A + + TP+ + Sbjct: 327 ILNDVLDYSKIEAGQIQLDTVDFRIEAVLDQLTALFSLAAESKGLALYYHLDPRTPQVLR 386 Query: 328 KCPI------------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG-------LST 368 P+ G + + + G + Sbjct: 387 GDPMRLGQVLNNLVGNAVKFTERGFVELRIRALREDQGQIQLAFSVRDTGIGMDQASIEH 446 Query: 369 LLDAPKLSDNNAIKP-----------VMLYRSDRTCIAASARLHTIQ----WNRENSLAM 413 L + +D + + L + I +RL Sbjct: 447 LFQSFTQADCSITRRYGGTGLGLSISRQLAQLMGGDIRVRSRLGIGSVFRFKADFQIAES 506 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI---------EVMQLCSILEATSDG 464 + + + R + +E + Q +IL AT+ G Sbjct: 507 QPRRIGSPPRVLGRRRVLIAADDCLARRAPRAILEAWGMEIAEARSLAQARAILSATAGG 566 >gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 732 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 191/378 (50%), Gaps = 13/378 (3%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTV- 499 + + ++ ++++ + + + + L GY E+ Sbjct: 358 ALEESNASIQEMKTVIDNSPAIVFKWKATPGWPVELVSDN-ISLLGYSPEEFSSGHLWYG 416 Query: 500 -FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555 + + + + L + ++ + + TK ++ + + Sbjct: 417 DIVHPDDLDRVQNNLDKQMAEG-QNDFTQEYRIITKSGEIKWVDERTLIKRDAKGKIKYL 475 Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI+E K+ + + AK +AE + KS FLA +SHE+RTPL +IIGFS+V+ + Sbjct: 476 QGIILDITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEA 535 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FG L N + +Y + I+ SG+ +LDI+ND+LD+SKIE+GKM L+ E L+E +SE + Sbjct: 536 FGKL-NEKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNT 594 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ +K++++ + P + AD +KQ+ N+LSNAI FTP G+I I Sbjct: 595 LEPLVKKKQLILDLDTSLEYP-VYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDC-GE 652 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 EE+ + V D+G+G+ E +K +PF QI + + +GTGLGL L K +++ + G+ ++ Sbjct: 653 EEITISVSDSGIGIPPEEQDKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWV 712 Query: 795 FSTPAKGTLIEIIFPLYD 812 S KG+ + PL + Sbjct: 713 ESEAGKGSTFKFTLPLQN 730 >gi|298241549|ref|ZP_06965356.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554603|gb|EFH88467.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 978 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 106/739 (14%), Positives = 227/739 (30%), Gaps = 46/739 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 W G + ++ L + ++ G ++ + Sbjct: 267 LVWIARPDGSITYNNQRLIDYLAMTLEQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPY 326 Query: 144 YGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +GT Y + +P + + G + Sbjct: 327 --EVEQRLQDGTSGAYRWFLVRGVPQRNAQGTILHW--VGTCTDIDEQKRVEQQLNESRE 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTE 257 + L E + + + L Sbjct: 383 NWRVLAETVPQLVWTSLPDGFVTYFNQRSFEYTHAAFEQLQGYGWYQFVHPEDAERLVAL 442 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + E+ + +++ + +++ ++ Sbjct: 443 RRHAFATGETYEVANRVRNGQTGAYRWFLTRAMPVRDGIGQIVKWVGTCTDIEDQKQAEQ 502 Query: 318 GENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E + P + + G L Y N + Sbjct: 503 KLKESRENFRVLAETLPHLVWTMQPDGRLDYVNQRACDYIGASPEYMLGDEWWQ---FVH 559 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P + + S T + + + G Sbjct: 560 PDDYERI---QALRRHSRETGEPYEIEYRLKDGQTGAYRWFLGRTLPVRDDTGQIIKWLG 616 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + ++ ++ +T GI II +E I+ N ++ GY ED+ Sbjct: 617 TSTDIEGQKRIEESLRQSQERVSVLMNSTMIGINIIEKE-QIVDANDTFLRMTGYTCEDL 675 Query: 493 L-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + + + + L+ T EK + K+ L + + L Sbjct: 676 RAGRMNWMRMTPPEYLARTRQVHQELATQQSVTYEKEYIC--KDGSRLPVVVCGVVLKHH 733 Query: 552 SCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D S K + K F++ SHE+R PLTA+ + + Sbjct: 734 PRQAIAFVLDNSARK--------------ELDQRKDAFISMASHELRNPLTALKLQT-SL 778 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +++ G P + ++ N V +V + LD+SK ++G++ E V+LDE + E Sbjct: 779 LHRQLARQGIPASAPALSSMETQINTVTRLVEEWLDVSKFQAGRLEYVRERVNLDELLRE 838 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + +Q RIL+R + ++ +AD + Q+ N+LSNAI ++P + + + Sbjct: 839 IVDTMQQTHPSHRILLRGAVQTSL---MADRDRLGQVFTNLLSNAIKYSPGAETVEMDLS 895 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V +RV D G+G+ + +K + F + +Q G G+GL + +V + G Sbjct: 896 TSEE-TVTVRVCDHGLGIPREQRDKIFERFYRASGPRQKAIPGLGMGLYIVAEIVKRHRG 954 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + ST KG+ + P Sbjct: 955 TITVDSTVGKGSTFTVTLP 973 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 48/526 (9%), Positives = 126/526 (23%), Gaps = 37/526 (7%) Query: 69 DSENTFVFDPIPRTVRFT---------WNIDAHGYLKEISEELPKTIGNYAFKMIGMR-L 118 +++ T P R T + +D G + + G + G Sbjct: 3 NAKQTKRLTPGSRETLLTILETLPDAFFVVDDAGTIVYANASAQAMSGATPEDVCGKSLW 62 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 C S ++ I + Q P+ + + P G Sbjct: 63 CGASHLVSTALYQVIQKAKQTQEP-TEVEYASPVT----RHWLHVQLAP------TVGGL 111 Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238 H R + R ++ + + + + + P Sbjct: 112 M--LQFHEMRAPAPRQETFPRGERLCIGDLDGLPTWIGILTPEGIVLDINAVPLDDAQVR 169 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + + + A + + + + + + Sbjct: 170 REEVIGKPLAEAPWWSFAPASQEWLRAAIARASTGETVHFEVLLRPRGGIVLSFEGTITP 229 Query: 299 SFEYLSHRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353 + H + ++ + + +D P ++ G++ Y N + Sbjct: 230 HMDADHHVEYLVIAGIDITARKQADEAIHTLIDAIPQLVWIARPDGSITYNNQRLIDYLA 289 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 +E G L + + RL Sbjct: 290 MT----LEQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPYEVEQRLQDGTS--GAYRWF 343 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + N + G + + + ++++ + E + +G Sbjct: 344 LVRGVPQRNAQGTILHWVGTCTDIDEQKRVEQQLNESRENWRVLAETVPQLVWTSLPDGF 403 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGS 532 + N+ + E + + F+ + + + ++ G Sbjct: 404 VTYFNQRSFEYTHAAFEQLQGYGWYQFVHPEDAERLVALRRHAFATGETYEVANRVRNGQ 463 Query: 533 TKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKK 576 T + R + + + T DI + KQ + KL +++ Sbjct: 464 TGAYRWFLTRAMPVRDGIGQIVKWVGTCTDIEDQKQAEQKLKESRE 509 Score = 87.4 bits (215), Expect = 9e-15, Method: Composition-based stats. Identities = 35/404 (8%), Positives = 97/404 (24%), Gaps = 18/404 (4%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + L + + E V + I + + + Sbjct: 5 KQTKRLTPGSRETLLTILETLPDAFFVVDDAGTIVYANASAQAMSGATPEDVCGKSLWCG 64 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 L + L + + QE + T+ L P+ Sbjct: 65 ASHLVST--ALYQVIQKAKQTQEPTEVEYASPVTRHWLHVQLAPTVGGLMLQFHEMRAPA 122 Query: 311 LSAY-FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 F GE L +D P + + + + L +++ Sbjct: 123 PRQETFPRGERLCIGDLDGLPTWIGILTPEGIVLDINAVPLDDAQVRREEVIGKPLAEAP 182 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + ++ + S + L L+ + Sbjct: 183 WWSFAPASQEWLRAAIARASTGETVHFEVLLRP---RGGIVLSFEGTITPHMDADHHVEY 239 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + ++++A + I +G I N+ + + Sbjct: 240 LVIAGIDITARKQADEAI-------HTLIDAIPQLVWIARPDGSITYNNQRLIDYLAMTL 292 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E + + + + + + + +E+ T + Sbjct: 293 EQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPYEVEQRLQDGT-SGAYRWFLVRGVPQR 351 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + T DI E K+ + +L+ +++ + + Sbjct: 352 NAQGTILHWVGTCTDIDEQKRVEQQLNESRENWRVLAETVPQLV 395 >gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon] Length = 1036 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 100/610 (16%), Positives = 204/610 (33%), Gaps = 28/610 (4%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + K +++ +K+ + LK S Sbjct: 444 VLDPDGDIIKANKAAFNLLGYSEAEVIGMSFDKIVGKPKQEEEGKIELKKLIREPEASIT 503 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEGENLTPET 325 + + + E E Sbjct: 504 NLETTYLTKDRREIPVNFAASIMKNENGELQGIVCNACDITERKQAEEALRESEERFRAI 563 Query: 326 VDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + F+ NP+ L + I L D + Sbjct: 564 SETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTD--DDLFD--------KEAAL 613 Query: 385 MLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + D + + + I + E + GI + + + Sbjct: 614 HIREVDSHVLKGETVEEEHTKKIKGVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRA 673 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + + SI E+ D A + +G IL ++ GY E++L + F Sbjct: 674 EEALRESEERYRSIFESIQDVYAEVAMDGTILEITPSIQSFSGYAPEEVLGRSLAEFYVY 733 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559 L + + + K + ++ +K + +S TM Sbjct: 734 PEQRA--ALLERLRLGG--SVNDYEVVLRHKTGRAVTSSFTVKVVTDASGTPVKIVGTMR 789 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ ++ K + K++FL HE+R+PL I+G++ +++ Sbjct: 790 DVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASLLEQGEL---- 845 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + +Y I+ S + + +++ +L+++++E+GK L E +S+ E V+ + A Sbjct: 846 NEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNNVLERFGPQA 905 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + K+ I + D + + I N++SNAI +T G+I I + + Sbjct: 906 DAKKQTISAVVPEGT-EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVVEDRKEG-IRV 963 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+ +L +A + F S + + G GLGL + K V + G+ ++ S Sbjct: 964 CVADTGIGIPKEQLPRAFERFFMADTSLRRK-GGLGLGLAIVKGYVKLHGGEVWVTSELG 1022 Query: 800 KGTLIEIIFP 809 KG+ P Sbjct: 1023 KGSKFWFTLP 1032 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 53/330 (16%), Positives = 101/330 (30%), Gaps = 21/330 (6%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 S + T++ V G++ AN + L Y + I Sbjct: 414 MAQRIKNSFTETVIKKELENTLNTMTDTLIVLDPDGDIIKANKAAFNLLGYSEAEVIG-- 471 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 ++ PK + I+ L R + + T + + F N+ Sbjct: 472 MSFDKIVGKPKQEEEGKIELKKLIR--EPEASITNLETTYLTKDRREIPVNFAASIMKNE 529 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E + + + + + + +I E D I I +R N + + Sbjct: 530 NGELQGIVCNACDITERKQAEEALRESEERFRAISETAQDSIFIKDRALKYTLVNPTMER 589 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 LFG P I+ K ++ + + +L + + + L S + Sbjct: 590 LFGLPASKIIGKTDDDLFDKEAALHIREVDSHVLKGETVE----EEHTKKIKGVLFSFHV 645 Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----- 594 I + +S DI+E K+ + L +++ D A V+ Sbjct: 646 IKVPMRDNSGEVIGLCGIARDITERKRAEEALRESEERYRSIFESIQDVYAEVAMDGTIL 705 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 EI TP +I FS + G Y+ Sbjct: 706 EI-TP--SIQSFSGYAPEEVLGRSLAEFYV 732 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 40/377 (10%), Positives = 102/377 (27%), Gaps = 28/377 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145 +D G + + ++ +G ++IGM + + I + Sbjct: 445 LDPDGDIIKANKAAFNLLGYSEAEVIGMSFDKIVGKPKQEEEGKIELKKLIREPEASITN 504 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +TT + +P++ AA + + N E G + +++F Sbjct: 505 LETTYLTKDRR--EIPVNFAASIMKNENGELQGI--VCNACDITERKQAEEALRESEERF 560 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + ++ L +K+ T+ + + Sbjct: 561 RAISETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTDDDLFDKEAALHIREVDS 620 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + E+E I ++ +++NS E + +E + Sbjct: 621 HVLKGETVEEEHTKKIKGVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRAEEALRES 680 Query: 323 PE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + + V G + PS + Y + + L + Sbjct: 681 EERYRSIFESIQDVYAEVAMDGTILEITPSIQSFSGYAPEEVLG------RSLAEFYVYP 734 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + R + L + ++ +F + + G + Sbjct: 735 EQRAALLERLRLGGSVNDYEVVL---RHKTGRAVTSSFTVKVVTDASGTPVKIVGTMRDV 791 Query: 438 VDTRINKRKMEIEVMQL 454 + + ++ E +L Sbjct: 792 TERKR----LDDERERL 804 >gi|149174913|ref|ZP_01853537.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] gi|148846250|gb|EDL60589.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797] Length = 989 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 113/369 (30%), Positives = 191/369 (51%), Gaps = 14/369 (3%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + ++ SI++ D I I+ EG I NR LFGY + + K + + Sbjct: 455 KDREVRYRSIMDNVMDAIITIDLEGKIEEFNRGAEYLFGYYNHEAIGKSIDLLIPPLHQK 514 Query: 508 VMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISE 563 + + Y + L+ L + + + + + L + L ++ + DISE Sbjct: 515 IQHKYSSGELNPQLVRAIGSRQEIVAQRNDGSTFPAELAVSSVLLADREIFTGIIQDISE 574 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + L+ A+K AE S KS+FLA +SHEIRTP+TAI+GF++++ N L Sbjct: 575 RKDYERSLNEARKRAEAASEAKSEFLANMSHEIRTPMTAILGFTDILLNN----LRKKED 630 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 IE AN + R+G ++ ++ND+LD+SKIE+ K+ L V+ E + + ++L+Q+ A+ K Sbjct: 631 IESANIVKRNGEYLIGVINDILDLSKIEARKLELEQVRVNTIELIRDIVALMQIKADLKE 690 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSN-EEVI 738 + + SF N IP I+ D ++QI +N+L NAI FT SG + + T ++ Sbjct: 691 LELVVSFDNPIPETIVTDPTRLRQILINLLGNAIKFTDSG-YVELRTRTIHLEDGFAQLQ 749 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+G++ L + +PF Q +S + GTGLGL ++K + + G+ ++ ST Sbjct: 750 FDVIDTGIGISETALAQIYQPFTQADSSTTRKYGGTGLGLAISKRLSEMLGGRIHVTSTI 809 Query: 799 AKGTLIEII 807 G+ I Sbjct: 810 GSGSTFTIS 818 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 21/207 (10%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-------- 85 ET S ++ + NFT+ LD++ + D R VR+ Sbjct: 410 LETMISHEKGNKQSRADVDNFTEAGIVGYQYNRVLDAQEILLSDVKDREVRYRSIMDNVM 469 Query: 86 --TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-----PNNHIGDLLK 138 ID G ++E + G Y + IG + + LH + + L Sbjct: 470 DAIITIDLEGKIEEFNRGAEYLFGYYNHEAIGKSIDLLIPPLHQKIQHKYSSGELNPQLV 529 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 R + +G+ + ++++ + R F+G I+ D Sbjct: 530 RAIGSRQEIVAQRNDGSTFPAELAVSSVLLADRE-IFTG-----IIQDISERKDYERSLN 583 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIF 225 K+ E K + + Sbjct: 584 EARKRAEAASEAKSEFLANMSHEIRTP 610 >gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 674 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 103/478 (21%), Positives = 203/478 (42%), Gaps = 33/478 (6%) Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-- 416 + I + +L ++ + + L + + T + E+ + Sbjct: 44 ALTIEQQVDLILLDIQMPGMDGFETAHLLKMSASTRDIPIIFITAIYRSEHFYKQGYQVG 103 Query: 417 -------PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------------ 457 P ++ + + + + +++ + L + Sbjct: 104 AVDYLTKPVDENLLLNRILSYMRLLQREKSLQRTMAELQRKEHALQTAHDEIAETLRERT 163 Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 L+ SD I +++G ++ N ++FGYP + IL P + + +E Sbjct: 164 VALDRASDAIISADQQGHVIFWNHGAERIFGYPKQTILHTPLLRLIPDQLHETFLSHFSE 223 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571 +++ + + G ++ + + + + +S + DIS+ KQ + +L Sbjct: 224 VIASGEIKNSDSIYEFSGLRANGEVFPIEVSVSYWQGAERHFFSAVVRDISQRKQLETQL 283 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 HA++I+E + KS FLA +SHEIRTPL I+G ++++ N + Sbjct: 284 RHAQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLEETDL----TEMQHWCVNILG 339 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD+SKIE G ++L P L + + E L A K I +R F+ Sbjct: 340 NSGRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVEELFTFSALAKGITLRGHFS 399 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++P ++ D ++Q+ LN+L NAI FT G + +S + +E+ V D+G G+ Sbjct: 400 ESLPQWVMGDPTRLRQVLLNLLGNAIKFTKQGF-VELSAQTMAEDEICFSVFDSGPGIAK 458 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ PF Q +S + G+GLGL +++ +V G+ + S KG+ Sbjct: 459 ERQQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLESRLGKGSRFYFSL 516 >gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603] gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048] Length = 545 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196] Length = 545 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621] Length = 545 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 870 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 124/657 (18%), Positives = 231/657 (35%), Gaps = 33/657 (5%) Query: 170 SRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE----KYDI 224 R G G V A + +K S KE + + Sbjct: 232 DRQGTVIAATGRGQTVEAPDGALTAAARAFQSTSPAPGKAAVKAYPSPTGKEEMIAAFVL 291 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + R ++ + V+ L++S ++ + + Sbjct: 292 LNNGWTVSLARPRSSFVDEIAPEVTRISVIVGGLLLLVSSLGFAIAHHVAGRW-DAARKA 350 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343 L+ E L + +D VY L Sbjct: 351 LAAAHDELETRVHERTAALDTSRRELSTKS-----RTLETILDNIAQGISVYDDDLRLVA 405 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHT 402 N F L + L + + P + Sbjct: 406 CNHRFGELLRLPPDMTRPGTALEDYLRFNARRGEYGPGDPEAHVAERMDLARNFQPHRFQ 465 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 Q +L + P + + R + + L +E + Sbjct: 466 RQRADGTALEVIGNPLPGG-------GFVATHTDITEARRAEEALRT----LSRAVEQSP 514 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 + I + G I N ++ GY +E++ + T + L ++ Sbjct: 515 VSVIITDPRGNIDYVNPKFMEVCGYTLEEVRGLNPRLLKSGLTQDAVYADLWRTITAG-- 572 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 T E K +L R I + Y DI+ K ++ L A + A Sbjct: 573 GTWEGELQNRRKNGELYWERASISPIRSPDGAILHYLAVKEDITARKAAEDALVAAMQAA 632 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + K+ FL+ +SHE+RTPLTA++G++E++++ GPL + ++ ++ I SG +L Sbjct: 633 EDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPS-QHADFVAAISDSGRHLL 691 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I++++LDIS+IE G + P L E + +++ K I + +P + Sbjct: 692 SIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQLDLEEGGAMPLV- 750 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D R+V+Q+ +N+L NA+ +T +GG+I + T + + + + V DTG G+ +L + Sbjct: 751 TDSRAVRQVLINLLGNAVKYTEAGGRISVGLT-RAGQTLRVVVADTGCGIATDKLAHVFE 809 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ + G GLGL + + +V+ G I S P +GT + + PL + Sbjct: 810 PFQRVDPLRADPARGVGLGLAICRRIVELLHGDIAIQSEPGRGTAVTLTLPLSAADN 866 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 19/227 (8%), Positives = 50/227 (22%), Gaps = 5/227 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G + ++ + + G ++ G+ + L D + + TW G+ Sbjct: 520 TDPRGNIDYVNPKFMEVCGYTLEEVRGLNPRLLKSGLTQDAVYADLWRTITAGGTWEGEL 579 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + PI S + + + + Sbjct: 580 QNRRKNGELY--WERASISPIRSPDGAILHY--LAVKEDITARKAAEDALVAAMQAAEDA 635 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K S + +++ ++ ++ L S Sbjct: 636 NRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPSQHADFVAAISDSGRHLLSIID 695 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + T ++ L Sbjct: 696 EVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQLDLE 742 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 34/377 (9%), Positives = 91/377 (24%), Gaps = 33/377 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--------DPNNHIGDLLK-RQ 140 D L + + + + + DP H+ + + + Sbjct: 398 DDDLRLVACNHRFGELLRLPPDMTRPGTALEDYLRFNARRGEYGPGDPEAHVAERMDLAR 457 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 N + +GT L ++ P+ G + L Sbjct: 458 NFQPHRFQRQRADGTAL----EVIGNPL-------PGGGFVATHTDITEARRAEEALRTL 506 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + D + + +V L Sbjct: 507 SRAVEQSPVSV--IITDPRGNIDYVNPKFMEVCGYTLEEVRGLNPRLLKSGLTQDAVYAD 564 Query: 261 LLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + + + N Y ++ +++ YL+ + + ++ Sbjct: 565 LWRTITAGGTWEGELQNRRKNGELYWERASISPIRSPDGAILHYLAVKEDITARKAAEDA 624 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + V+ + Y + + +AG L + ++ Sbjct: 625 LVAAMQAAEDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPSQHAD-FVAAI 683 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNREN--------SLAMTFIPFEKANQFPENMPQ 430 + +L D + L + + P A ++ + Sbjct: 684 SDSGRHLLSIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQLDLEE 743 Query: 431 NGIEPEDVDTRINKRKM 447 G P D+R ++ + Sbjct: 744 GGAMPLVTDSRAVRQVL 760 >gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1042 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 122/695 (17%), Positives = 257/695 (36%), Gaps = 58/695 (8%) Query: 152 IEGTNLYVPIDLAALPIYSR--NREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLH 208 + GT +A+P + + ++ R + + A + +++F+ L Sbjct: 354 VRGTTAGTLCFASAMPRTTPFTDGDYDLIRLMAQWIGSEQDRLQTEAALRESEERFALLA 413 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + ++ + + + ++ + + + + L T + Sbjct: 414 SVTTEGVIISEQGMIVDANAAAGTLFGVPPERLRGMPVFEFTTPEGREKVARALTTGYDR 473 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 P + I+ + + + + A E + Sbjct: 474 --PYEVLARRIDGTLFPAEVTGRNIPYHGRTARVTTIRDISRQRLAEAALRASEERFRQL 531 Query: 326 VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + F++ S + Y NP++ + L + A+ Sbjct: 532 AENVNQVFWMSTPSLDQILYVNPAYERIWGRSCDSLYAQPSSLFEAIVPEDRERALALHR 591 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 R S + + + +T F N+ I + + + Sbjct: 592 AEYARG------YSIEFQILHTDGQQRWILT-RAFPVINEAGAVYRIAAISEDVTERKQA 644 Query: 444 KRKMEIE--------------VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + ++ +L +IL+A+S+ IA++ +G L+ NR +FG P Sbjct: 645 EAELRAAMTALEVQYQTADRAQSELRAILDASSEVIALLAPDGAFLTVNRRFCDIFGVPA 704 Query: 490 EDILRKPFTVFLEQ--NTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIII 545 + +L + + + +LS D + + + + + L++ Sbjct: 705 DQVLGRRLIDMRAEIRWFFGDADEVYERMLSALQDAQDVFREQVVQLRPQHRELAIFSAP 764 Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 D++ + + KS+F+A VSHE+RTPLT+I Sbjct: 765 VWTANQVHLGRLYVFRDVTHERAVE--------------RMKSEFVAMVSHELRTPLTSI 810 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 G+ +++ + GPL E + + + +L ++NDLLD+S+IE+GK+ LH P+ Sbjct: 811 KGYIDMLLDGDAGPLAVEHQ-ELLQIVKSNADRLLLLINDLLDMSRIEAGKLMLHRAPLD 869 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHF 718 + + + + ++ + K + + P + D V QI N+LSNAI + Sbjct: 870 VRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPLMFGDAARVHQILTNVLSNAIKY 929 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP GG+I + + + + V+DTG+G+T E E+ F ++ N GTGLGL Sbjct: 930 TPQGGEISVRLSVEPP-WMCIAVQDTGIGLTPEEQERIFDRFYRVRNRATREASGTGLGL 988 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + +++VD + G+ + S +G+ I FPL + Sbjct: 989 AITRSLVDLHQGRITVESEAGRGSTFRICFPLLTS 1023 Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats. Identities = 35/414 (8%), Positives = 92/414 (22%), Gaps = 38/414 (9%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 + + +SE F T I G + + + G ++ G Sbjct: 391 SEQDRLQTEAALRESEERFALLASVTTEGVI--ISEQGMIVDANAAAGTLFGVPPERLRG 448 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 M + + + + + L + I+GT + +P + R Sbjct: 449 MPVFEFTTPEGREK---VARALTTGYDRPYEVLARRIDGTLFPAEVTGRNIPYHGRTARV 505 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 + + A + +++F L E + D +P Sbjct: 506 T------TIRDISRQRLAEAALRASEERFRQLAENVNQVFWMSTPSLDQILYVNPAYERI 559 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-----LPEQEDFHTINLNQYTKKQYFG 290 SL + + + E + + + + Q Sbjct: 560 WGRSCDSLYAQPSSLFEAIVPEDRERALALHRAEYARGYSIEFQILHTDGQQRWILTRAF 619 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENL------------------TPETVDKCPIP 332 + N + + + + + +D Sbjct: 620 PVINEAGAVYRIAAISEDVTERKQAEAELRAAMTALEVQYQTADRAQSELRAILDASSEV 679 Query: 333 F-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + G N F + + + D + + ML Sbjct: 680 IALLAPDGAFLTVNRRFCDIFGVPADQVLGRRLIDMRAEIRWFFGDADEVYERMLSALQD 739 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 ++ ++ + ++ + + + R +R Sbjct: 740 AQDVFREQVVQLRPQHRE---LAIFSAPVWTANQVHLGRLYVFRDVTHERAVER 790 Score = 41.9 bits (97), Expect = 0.42, Method: Composition-based stats. Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 8/228 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI---LHIDPNNHIGDLLKRQNTWYGKT 147 G ++ G A +++G RL D+ D + +L Sbjct: 685 PDGAFLTVNRRFCDIFGVPADQVLGRRLIDMRAEIRWFFGDADEVYERMLSALQDAQDVF 744 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 ++ + + + + P+++ N+ G ++V R RA+ + + + + Sbjct: 745 REQVVQLRPQHRELAIFSAPVWTANQ-----VHLGRLYVFRDVTHERAVERMKSEFVAMV 799 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + K D+ P ++ + + A + +L + + E Sbjct: 800 SHELRTPLTSIKGYIDMLLDGDAGPLAVEHQELLQIVKSNADRLLLLINDLLDMSRIEAG 859 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L + + + P + Sbjct: 860 KLMLHRAPLDVRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPL 907 >gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio harveyi HY01] Length = 867 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 109/389 (28%), Positives = 176/389 (45%), Gaps = 14/389 (3%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + +++ + +V QL + E D I I + G I N A L Y + + K Sbjct: 224 IKEQYQSQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDKT 283 Query: 497 FTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + L+ NT +V ++ + Q + L TK + + + Sbjct: 284 LSELLQGPNTQNVQLQKFSDSIQN--HQPVRTEVLNYTKSNQPYWGERDLSPVMNEHGQV 341 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + DISE + + KLS K + + + KS+FLA +SHEIRTP+ AI+GFSE++ Sbjct: 342 QRFIVVERDISERIEIEKKLSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILL 401 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + +S ++ ++ND+LD SK+E+GK+ L EP L E V + Sbjct: 402 E----SEKRNEQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESS 457 Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST 729 +L AN+K + + +I ++ D + QI LN++ NA+ FT G I I+ Sbjct: 458 TALCAYQANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITE 517 Query: 730 THTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T V V DTG+G+ L M F Q+ NS + EGTGLGL ++K +V Sbjct: 518 KRTPQGNVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMY 577 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + ST G+ L + H Sbjct: 578 GGDLSVTSTLGSGSCFSFSLKLCQQTPDH 606 Score = 43.9 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 24/267 (8%), Positives = 68/267 (25%), Gaps = 23/267 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146 D G + ++ + L ++ + D ++ + Sbjct: 255 TDPVGKITWVNPAFETLTEYSLAEARDKTLSELLQGPNTQNVQLQKFSDSIQNHQPVRTE 314 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + DL+ P+ + + + R + + KK + Sbjct: 315 VLNYTKSNQPYWGERDLS--PVMNEHGQVQ--RFIVVERDISERIEIEKKLSDEVKKSAR 370 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + K + + P + M L ++ L + + Sbjct: 371 ATKAKSEFLANMSHEIRT------PMNAIMGFSEILLESEKRNEQRSLLHLLHKSAGNLI 424 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + D+ + + T + L+ + S +++ + + V Sbjct: 425 TLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAYQANKKDLKLLVDMPLDIHAHV 484 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTK 353 + G + N L L Sbjct: 485 --------IGDRGRI---NQILLNLIG 500 Score = 40.8 bits (94), Expect = 0.95, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 7/144 (4%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E + + + + G + + NP+F LT+Y + LS L Sbjct: 230 SQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEA--RDKTLSEL 287 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L P + K S + + + + + N+ + Sbjct: 288 LQGPNTQNVQLQK---FSDSIQNHQPVRTEVLNYTKSNQPYWGERDL-SPVMNEHGQVQR 343 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ 453 +E + + ++K+ EV + Sbjct: 344 FIVVERDISERIEIEKKLSDEVKK 367 >gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 705 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 103/392 (26%), Positives = 176/392 (44%), Gaps = 14/392 (3%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + ++ R + + + SI E ++GI +G +S N A++++ GY Sbjct: 282 VGEMFSNTIERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDS 341 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + L T Q + ++ + + + + Sbjct: 342 PEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAVF 401 Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + T+ DI+E K L AK+ AE + KS FLA +SHE+RTPL AIIG Sbjct: 402 DAMGELVCYEGTVEDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIG 461 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +SE++ + LG + I +G +L ++ND+LDISKIE+G+M+L E + Sbjct: 462 YSEILSEEA-EELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDIS 520 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + Q ++ + +NI + AD+ V+QI LN+LSNA FT + G+I Sbjct: 521 SLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TNGKI 579 Query: 726 IISTTH-------TSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + + + V +V DTG+GM+ + E+ +PF Q S R GTGLG Sbjct: 580 KLEVSRVSSLPYSQESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGLG 639 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L ++ G + ST +G+ +++ P Sbjct: 640 LAISDRFCQMMGGNIQVESTLGEGSTFKVVIP 671 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 7/171 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145 G + L + +G + + + L DVS L++ P + + + G Sbjct: 319 QTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISG 378 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++ ++ +GT + I A ++ E + G V +R + Sbjct: 379 FESQVYRQDGTT--IWISENARAVFDAMGELVCYEG--TVEDITEGKTAAEALERAKEAA 434 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + K + + + + L D Sbjct: 435 ETANRAKSTFLANMSHELRTPLNAIIGYSEILSEEAEELGYEDIVPDLERI 485 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 34/147 (23%), Gaps = 6/147 (4%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + E + G ANP+ + Y S +D+ Sbjct: 291 ERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIAN-- 348 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L+ + + + V + ++ ++ + Sbjct: 349 LTDVSTQLYVKPTRRAEFVAAIAKSSVISGFE---SQVYRQDGTTIWISENARAVFDAMG 405 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM 452 E + G + + + +E Sbjct: 406 ELVCYEGTVEDITEGKTAAEALERAKE 432 Score = 41.2 bits (95), Expect = 0.74, Method: Composition-based stats. Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 534 KEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 K+ ++ + K+ + DI+E K+ + L + + + ++ + F++ Sbjct: 43 KDGRIFEVYSHPSKVGNKLVGRVWSFRDITERKRVEKALQNRVEFEQLITNLSTYFIS 100 >gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nodularia spumigena CCY9414] Length = 1389 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 124/674 (18%), Positives = 255/674 (37%), Gaps = 41/674 (6%) Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 N VP+ + + + + V ++D P + F L + Sbjct: 588 NREVPVSKSGIQMRDNEQ----------VRQIKIDVVPFKPPAAREWYFLVLLASSSSST 637 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 ++ + P + ++ L + A + L++ + E E+ Sbjct: 638 AILEAVSPPGRTGRRKP-NEQEQEIKRLKQELAANKEYLQSIIEEQQATNEDLRAANEEI 696 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPF 333 + N + + T + + + E L+ N +E N + IP Sbjct: 697 LSSNEELQSTNEELETAKEEIQATNEELNTINDELQRRNIQSNEVTNDLQNLLSSINIPI 756 Query: 334 -FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + + + P + S D ++ L+ P L L Sbjct: 757 LMLGGNLQIRRYTPVAEKIFNLISSDMGRPISDINHNLNIPDLEKQILDVIGTL------ 810 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + +Q + P+ + + I + D + + ++ Sbjct: 811 ----NFKTQEVQDKNGRWYDLRIRPYRTIDNKID--GAVVILVDIDDLKRSSEQLRTSRD 864 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNH 511 + +I++ + + +++ ++S N F + ++ + Sbjct: 865 YVQAIVDTMRESLVVLDVNLRVISANEFFYDTFQVSPAETEQRLIYEMGNGQWNIPQLRS 924 Query: 512 YLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKN 569 L EIL + Q LE K++ L L + L + DI++ KQ + Sbjct: 925 LLEEILPHHNQFQGLEVEHNFEQIGHKIMRLNARKMTLTDNREMILLVIEDITQQKQLEA 984 Query: 570 KLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +H A+ AE + K +FL+ +SHE+R PL +++G+S++++ ++F Sbjct: 985 ERTHLLGQEQSARNAAEAANRAKDEFLSILSHELRNPLNSMLGWSKLLQKKQF---DQAT 1041 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I+RS ++ DLLDIS+I +G++ + + + L + A+ +V+ A K Sbjct: 1042 INKGLAAIERSAQAQAHLIKDLLDISRISAGRLRIDAQKLDLVSVIESAMEVVRFSAEAK 1101 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I ++ A ++ D ++Q+ N+LSNAI FTPSGG++ IS +T + +++ Sbjct: 1102 NIQIESNLAPAPRSMVGDANRLQQVFWNLLSNAIKFTPSGGKVTISLDYTDF-QAQIQIS 1160 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801 DTG G++ L + F Q S+ G GLGL + + +V+ + G S +G Sbjct: 1161 DTGYGISADFLPHVFERFRQADGSRTRSNPGLGLGLSIVRYLVELHGGTIDAESQGEGQG 1220 Query: 802 TLIEIIFPLYDTSH 815 + PL Sbjct: 1221 ATFTVRLPLQAPQQ 1234 >gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 1233 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 117/508 (23%), Positives = 195/508 (38%), Gaps = 39/508 (7%) Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 L +D P F G N S + Y + I G S L +P+ Sbjct: 458 ALLRSLIDSIPEAIVFKDQEGKYLGCNKSAEHMLGYSESEMI---GMTSVELTSPEQG-- 512 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + D + A L + S+ + + N+ E + + + Sbjct: 513 -----ARIRLEDSQVLKDRAALRYQEKVDISGKSVLLDILKLPFYNRRGELLGLISVWRD 567 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED--I 492 + ++ + + ++A DG+ ++ E II N + + GY + Sbjct: 568 VTREYQSAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPSYYSMLGYETNEFPA 625 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKK 547 L + + + Y ++ + E TK + L + + Sbjct: 626 LISSIEELIHPDDRDRVKTY-RDLYLSEPSGAYETEFRMRTKSGRYLWVLSRGRVVEFTA 684 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 S T DI+ K + L AK AE + +KS+FLA +SHEIRTP+ AIIG Sbjct: 685 DGMPSRMLGTHKDITRQKSNEVALLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGML 744 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + + +Y N S +L I+ND+LD SKIE+GK+ L P SL++ Sbjct: 745 QLASRTQLTL----QQQDYLNKAGFSAESLLRIINDILDFSKIEAGKLELESVPFSLEKV 800 Query: 668 VSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + I + L A EK + + + D + Q+ +N+LSNA+ FT G Sbjct: 801 LDHVIDMNALSAQEKGVELLLFSPLTTGLTLKGDPLRLGQVLVNLLSNAVKFTQDG---E 857 Query: 727 ISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 I E + VRDTG+G++ + F Q S + GTGLGL + Sbjct: 858 IELGCEDVGERDTQISLKFWVRDTGIGISREQQANLFDAFSQADGSTTRQYGGTGLGLSI 917 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +K +V G + S P +G+ Sbjct: 918 SKHLVSMMGGNLSVESEPQQGSTFSFTL 945 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 12/211 (5%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137 + D G ++ +G +MIGM +++ +L Sbjct: 465 DSIPEAIVFK-DQEGKYLGCNKSAEHMLGYSESEMIGMTSVELTSPEQGARIRLEDSQVL 523 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 K + + ++ + V +D+ LP Y+R E G + R L Sbjct: 524 KDRAALRYQE---KVDISGKSVLLDILKLPFYNRRGELLGL--ISVWRDVTREYQSAEQL 578 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDD 252 ++ + ++ G + I S L + + S E H DD Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPSYYSMLGYETNEFPALISSIEELIHPDD 638 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + + Y L E S + +F + Sbjct: 639 RDRVKTYRDLYLSEPSGAYETEFRMRTKSGR 669 >gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 767 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 114/583 (19%), Positives = 212/583 (36%), Gaps = 21/583 (3%) Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 SL + + +L + + + + + Sbjct: 31 SLFVLDMTRRQEAVALQQHVLQA-RALTQSVSASSAVWVASRDYSGLQEIIAALEHYPNL 89 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 + + P P + + + +L K + + Sbjct: 90 AHAIVLDSRGQVLAHSDRKRIGLYLTGLPDQPLLQVLQKTIRMVDVASPILLGGKPIGWV 149 Query: 361 E---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMT 414 GL + + ++ + + RL IQ + Sbjct: 150 RIGLNGKGLEADIAEIHRNGLIFALAAVMLGALLAVLTGRYLTRRLDLIQEVVDQVETGN 209 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGI 473 + E +D + + ++ + S++E D I I + G Sbjct: 210 ADVRVQLAGNDEAKRLGLAVNAMLDALSQRAESLQQSEQRFRSMIENAGDAIYIHDHNGK 269 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ILS N+ GY ++++L P ++ Q + + R + T+ + Sbjct: 270 ILSANQVCCCQTGYTLDELLMSPVSLVDRQIDVQTLEEICRLATAAPARFPMTLKTVHTR 329 Query: 534 KEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K+ + + + + + DI+E K+ +++L AK AE ++ KS+FLA Sbjct: 330 KDGSSFPVEVRLSLLPAGDDVHFVAMVRDITERKRAEDELLRAKAAAETANTTKSEFLAN 389 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ +IG +++++ Y YI+ ++ ++NDLLDISKIE Sbjct: 390 MSHEIRTPMNGVIGNAQLLRFTDL----TEEQSRYLEYIEADAKHLVSVINDLLDISKIE 445 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 +GKM L SL +++ + + K ++ T AN +P + D +KQI N Sbjct: 446 AGKMELEQTSFSLRGCINDLLKPMTPRIATKGLIFNTEIANTVPDALTGDQLRLKQILRN 505 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 ++ NAI FT G I + + E V DTG+G+ LE+ PF Q +S Sbjct: 506 LVGNAIKFTDQGS-ITLRVELLEHSENKALFYFSVIDTGIGIPQEALERLFTPFTQADSS 564 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL + + G + S+ G+ + P Sbjct: 565 VTRKFGGTGLGLSICNRLAGLMGGNISVESSEGAGSCFHVTLP 607 Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 35/139 (25%), Gaps = 9/139 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNTWYGK 146 D +G + ++ G +++ + V + + I + K Sbjct: 265 DHNGKILSANQVCCCQTGYTLDELLMSPVSLVDRQIDVQTLEEICRLATAAPARFPMTLK 324 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G++ V + L+ LP +V R Sbjct: 325 TVHTRKDGSSFPVEVRLSLLPAGDD------VHFVAMVRDITERKRAEDELLRAKAAAET 378 Query: 207 LHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 379 ANTTKSEFLANMSHEIRTP 397 >gi|298249868|ref|ZP_06973672.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547872|gb|EFH81739.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 112/734 (15%), Positives = 239/734 (32%), Gaps = 52/734 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-------RQNTW 143 G EIS+ +++G ++ + L R Sbjct: 151 PEGLALEISQRPLADAHLRREEVVGKPFIEI---PWWSYAPAVQRQLHTAIEQASRGKIV 207 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 Y + + P EG Y+ + + P +R G A L Sbjct: 208 YFEARIRPQEG--WYLDLAVTITPHLDADRHVEYLIYAG--RDITARKCAEAEIHALVDA 263 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L + + ++ + + L + +++ + Sbjct: 264 IPQLVWTAR--PDGSHDSFNQRWRDYTGLSIEEAQGEGWLQCLHPEDRQRVRSIWQCAVQ 321 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGE 319 + + E H +++ + + ++ E + Sbjct: 322 TGGAYETELRLRHGTTGEYRWFLARAMPVRDETGQIMKWFGTCTDIEDQKRTEQQLKESQ 381 Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + P + G + Y N + T + + + ++ G L Sbjct: 382 EHFRVLAETVPQLVWTTQPDGRVDYVNRRYCQYT-HAAFEQLQDYGW------RQFLHPE 434 Query: 379 NAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 +A V L + +T N + ++ + + G + Sbjct: 435 DAEYIVALRQHTLQTGEPYEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFGTCTDI 494 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKP 496 D + + + ++ +++ + GI I EG I+ N ++ GY ED+ Sbjct: 495 EDQKRTEEALRQSQERVSTLMNSNIIGINI--AEGEQIVDANDTFLRMTGYTREDLHAGN 552 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYS 555 + + K+ L + + + S Sbjct: 553 INWLHMTPPEYLARTLQAHEELDTQQSMTPYEKEYVCKDGSRLPVVVGRVTLQANPSQAI 612 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D S K+ + + K DF++ SHE++TPLTA+ ++ + +R Sbjct: 613 AIVLDNSARKELEQR--------------KDDFISMASHELKTPLTALKMQTQ-LARKRL 657 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++R + ++ +LLD+SKI++G++ E V LD + E + Sbjct: 658 ERQSPHEAATVLSKVERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTM 717 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q RIL+R ++ LAD + Q+ N+LSNAI ++P + + + + + Sbjct: 718 QHAHPSHRILVRGVVQASL---LADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEDA 774 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V +RV D G+G+ + +K F ++ +Q G G+GL + ++ + G + Sbjct: 775 -VTIRVHDHGLGIPREQRDKIFDRFYRVAGPKQKAIPGLGMGLYIVAEIIKGHGGTITVD 833 Query: 796 STPAKGTLIEIIFP 809 S KG+ + P Sbjct: 834 SKVGKGSTFTVTLP 847 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 50/501 (9%), Positives = 113/501 (22%), Gaps = 37/501 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA + +G ++ G L + + +LK + T Sbjct: 34 DAEMT-VYANASAQSILGATQEEVCGQPLWGCAPQ--LVSTALYQAVLKARQTRKLTEVE 90 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + T +P +G N + ++ ++K+ +L E Sbjct: 91 YRSPVTQ--TWFHAQIMP--------TGVGLAVFFQENTEPKRFKDALRQSEQKYLNLLE 140 Query: 210 IKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 +V + HLR + V ++ E+ Sbjct: 141 SISDRVAVLTPEGLALEISQRPLADAHLRREEVVGKPFIEIPWWSYAPAVQRQLHTAIEQ 200 Query: 267 SSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 +S + + + + + + Sbjct: 201 ASRGKIVYFEARIRPQEGWYLDLAVTITPHLDADRHVEYLIYAGRDITARKCAEAE---I 257 Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 VD P + G+ N + T + + G L L Sbjct: 258 HALVDAIPQLVWTARPDGSHDSFNQRWRDYTGLSIEEA-QGEGWLQCLHPED---RQRVR 313 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 RL ++ + M G + D + Sbjct: 314 SIWQCAVQTGGAYETELRLR--HGTTGEYRWFLARAMPVRDETGQIMKWFGTCTDIEDQK 371 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++++ + E + +G + NR + E + + FL Sbjct: 372 RTEQQLKESQEHFRVLAETVPQLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQDYGWRQFL 431 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSL 556 + L E + + + Sbjct: 432 HPEDAEYIVALRQHTLQTGEP--YEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFG 489 Query: 557 TMHDISEWKQEKNKLSHAKKI 577 T DI + K+ + L +++ Sbjct: 490 TCTDIEDQKRTEEALRQSQER 510 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 38/384 (9%), Positives = 92/384 (23%), Gaps = 27/384 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 W G ++ G + G I ++ + Sbjct: 267 LVWTARPDGSHDSFNQRWRDYTGLSIEEAQGEGWLQCLHPEDRQRVRSIWQCAVQTGGAY 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T Y A+P+ + + FG K + Sbjct: 327 ETE-LRLRHGTTGEYRWFLARAMPVRDETGQI--MKWFGTCTDIEDQKRTEQQLKESQEH 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 F L E + + ++++ + + + Sbjct: 384 FRVLAETVPQLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQDYGWRQFLH-PEDAEYIVAL 442 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + L + E E + + +++ + + ++ +E Sbjct: 443 RQHTLQTGEPYEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFGTCTDIEDQKRTEE 502 Query: 318 GENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E V I + + AN +FL +T Y D AG ++ L P Sbjct: 503 ALRQSQERVSTLMNSNIIGINIAEGEQIVDANDTFLRMTGYTREDL--HAGNINWLHMTP 560 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ + ++ + + + +AN Sbjct: 561 PEYLARTLQAHEELDTQQSMTPYEKEY--VCKDGSRLPVVVGRVTLQANPSQAIA----- 613 Query: 434 EPEDVDTRINKRKMEIEVMQLCSI 457 V ++++E S+ Sbjct: 614 ---IVLDNSARKELEQRKDDFISM 634 Score = 84.3 bits (207), Expect = 9e-14, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 22/265 (8%) Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 ++ P F + YAN S + + A Sbjct: 10 LTPASSETLVTLLETLPGALFVIDDAEMTVYANASAQSILGATQEEVCGQPLWG----CA 65 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P+L + V+ R R R F P + Sbjct: 66 PQLVSTALYQAVLKARQTRKLTEVEYR--------SPVTQTWFHAQI----MPTGVGLAV 113 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 E+ + + K + + ++LE+ SD +A++ EG+ L ++ E++ Sbjct: 114 FFQENTEPKRFKDALRQSEQKYLNLLESISDRVAVLTPEGLALEISQRPLADAHLRREEV 173 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + KPF + + L + R + + +E L L + I + Sbjct: 174 VGKPFIEIPWWSYAPAVQRQLHTAIEQASRGKIVYFEARIRPQEGWYLDLAVTITPHLDA 233 Query: 552 SCYSLTM----HDISEWKQEKNKLS 572 + + DI+ K + ++ Sbjct: 234 DRHVEYLIYAGRDITARKCAEAEIH 258 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 30/394 (7%), Positives = 97/394 (24%), Gaps = 17/394 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + +S+ F + W G + ++ + ++ Sbjct: 365 TDIEDQKRTEQQLKESQEHFRVLAETVP-QLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQ 423 Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + L+ + + T Y A+PI Sbjct: 424 DYGWRQFLHPEDAEYIVALRQHTLQTGEPYE-IEYRFRNGNTGSYRWFLTRAMPIRDETG 482 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SP 230 + + FG ++ ++ S L ++ + + + + Sbjct: 483 QVV--KWFGTCTDIEDQKRTEEALRQSQERVSTLMNSNIIGINIAEGEQIVDANDTFLRM 540 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + R ++ + + L L +++S P ++++ + ++ Sbjct: 541 TGYTREDLHAGNINWLHMTPPEYLARTLQAHEELDTQQSMTPYEKEYVCKDGSRLPVVVG 600 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 TLQ + ++ S ++ ++ A Sbjct: 601 RVTLQA---NPSQAIAIVLDNSARKELEQRKDDFISMASHELKTPLTALKMQTQLARKRL 657 Query: 349 LLLTKYKSVDDI----EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + +++ + L L+ + + + Sbjct: 658 ERQSPHEAATVLSKVERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTM 717 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + S + +A+ + + + Sbjct: 718 QHAHPSHRILVRGVVQASLLADRDRLGQVFTNLL 751 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 48/145 (33%), Gaps = 9/145 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 L ++LE + +I+ + + N + + G E++ +P Q + Sbjct: 13 ASSETLVTLLETLPGALFVIDDAEMTVYANASAQSILGATQEEVCGQPLWGCAPQLVSTA 72 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + + + + + +I+ ++ + +E K+ Sbjct: 73 LYQAVLKARQTRKLT----EVEYRSPVTQTWFHAQIMPT----GVGLAVFFQENTEPKRF 124 Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592 K+ L +++ SD +A + Sbjct: 125 KDALRQSEQKYLNLLESISDRVAVL 149 >gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM 12442] Length = 558 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 26/391 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 +F E+ L + + + + + EI +++ + + LG ++ + Sbjct: 247 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + N I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + E +++ + +K I ++ ++ ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VEMKELLEEIKMVLENKSQDKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +V+A+ G + S +GT + P D Sbjct: 525 KHLVEAHHGTVTVESEVGEGTTFTVALPKSD 555 >gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44] Length = 470 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 186/392 (47%), Gaps = 28/392 (7%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 99 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 158 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +F E+ L + + + + + EI ++ + +++ L E K + Sbjct: 159 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEV-KVRKQMLLSLGIERKHFEVYG 214 Query: 544 --IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 II L HDI+E K+ + + DFLA VSHE++TP+T Sbjct: 215 APIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPIT 260 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 261 SIKGFSETLLD---GAMENQQFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMG 317 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V + E + E +++ + EK I ++ ++ ++ D +KQI +N+++NAI +TP Sbjct: 318 TVDMKELLGEIKMVLENKSQEKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTP 376 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +GG + ++ ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 377 AGGTVSVAL-LEDEHNAYIKVSDTGIGISTEEIPRIFERFYRVDKARSRNTGGTGLGLSI 435 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +V+A+ G + ST +GT + P D Sbjct: 436 VKHLVEAHHGTITVDSTVGEGTTFTVALPKAD 467 >gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1193 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 131/768 (17%), Positives = 260/768 (33%), Gaps = 57/768 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W+ IS +G + ++ + + L Sbjct: 24 WSWHTETRQFRISRNFHSLLGYSPDALPETPEAWLALAHADERPQLSTLFARLSANTARG 83 Query: 145 GKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 ++ T L+ ++ + + + A + + Sbjct: 84 YPPFTLRLKHTNGLWHWFEVRTPCTGTGDGA---APLVITFNEITQQKQAEAALRDSQLR 140 Query: 204 FSHLH----------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 F L+ + + + + +F ++ + + + TE++ D Sbjct: 141 FRALYNTSPLAFILWDRQGHITEWNRRAEQMFGWKAAEVIGKQVHHLLLSTEHHEAFADT 200 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + + + P + + + L Sbjct: 201 V-RAVMHGTGTGKFTGPAHGKDGVLLVCNWYNVALRTAQGKLVGILSLLLDITEERLTHQ 259 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSV---------DDIEIA 363 ++ E + V+ P + AN L + D + Sbjct: 260 RIEKSEKIYRTLVETSPDAILLLGLDGGLKTANQQAHRLFGLDEMLDLDSTNVRDLLPDN 319 Query: 364 GGLSTLLDAPKL-SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 LD P+ + + + + R D A TI + + Sbjct: 320 ASTEHFLDDPEDFNGFIVTRQLSMQRLDGGRFDADTAFTTIMDSTGQPTGIVLFA-RDVT 378 Query: 423 QFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + ED++ + +R +E L I++ + +++ + I N A Sbjct: 379 GKLQAERELEAHREDLERLVQERTYDLENAHDTLAKIIDGSPVPTLVLDADHKITHWNEA 438 Query: 481 VSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKL 538 ++ G DI+ + +M L ++ +K + Sbjct: 439 CEQIIGVKAGDIVGTSNQWKAFYPSQRPIMADLVLNGEMAQIQALYSDKYRRSRLVQGGY 498 Query: 539 ----------LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584 L L + T+ DI+E KQ + L+ AK AE + Sbjct: 499 EAEDFFPMFKRWLFFTAAPLYDKQGRIVGAIETLQDITERKQAEIALTEAKHAAEAAAEA 558 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K+ FLA +SHEIRTP+ A+IG + ++ + +Y + I SG ++L ++ND+ Sbjct: 559 KAAFLANMSHEIRTPMNAVIGLAHLLLKGDLSG----KQRDYISRIHGSGQMLLGLINDI 614 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIE+G+M L +LD+ + S++ A EK ++++ ++P +L D Sbjct: 615 LDFSKIEAGRMVLEETEFALDDVLDNVTSVLLHRAQEKGLIMQYVVEPDVPTNLLGDPLR 674 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKP 759 + QI +N+L NA+ FT SG I + T+ E+ + V+DTGVGM+ + + + Sbjct: 675 LAQILINLLGNALKFTASGS-ITVFVRRLPGNTARAELEIDVQDTGVGMSQEQQQVLFQA 733 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q +S + GTGLGL + K + G ++ S G+ Sbjct: 734 FSQADSSITRKYGGTGLGLTICKRLAQLMRGDIWVTSQSGVGSTFTFT 781 >gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 887 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 114/512 (22%), Positives = 212/512 (41%), Gaps = 37/512 (7%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-------E 361 E + + + + + N + ++ + Sbjct: 75 RKAEEDLREKDQMYRALFEMSNDAVIISDGKKVLDINNKGCEIFGFREERPLNVSLISFI 134 Query: 362 IAGGLSTLLDAPKLSDNNAIK--PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 LS L A K + A + +++ + L I N + Sbjct: 135 PPEYLSELQQALKETFKQASSCFEMRYQKAEGEIVDIEVSLSLIDRNNNIIHIVA----- 189 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTN 478 + + +R + + ++L+ T I +I I+ N Sbjct: 190 ---------------QDITGVKNAERLEQENRERFKTVLDNTLCSILLIEASSRKIVDAN 234 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 K GY ++++ + + + E I + ++ Sbjct: 235 PVALKTTGYSEKELIGMVCSRLIC----QAGEERCNVPSLDPAGELSESILFKAGGDKIS 290 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + ++ + + + + D+SE K+ + +L AK AE + S+FLA +SHE+RT Sbjct: 291 ILRNVVPVSIGGNGYFVESFIDLSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRT 350 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PLTAIIGFSE++ + G + ++ +I SG +L ++N ++D+S+IE+GKM+L Sbjct: 351 PLTAIIGFSELMLGEATGEF-DELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLE 409 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 + SL + ++ S+ A +K I + + ++ I AD KQI N++SNAI F Sbjct: 410 PDFFSLYDIFADTKSISSPLALKKNISMDFNVESDFL-IYADRTRFKQIMYNLVSNAIKF 468 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP+GG + + S + + V DTG+G++ E++ KPF QI + E TGLGL Sbjct: 469 TPAGGSVEV-VGRRSENRIRVTVSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGL 527 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L+K V+ + G+ ++ S P KG+ P+ Sbjct: 528 VLSKNFVEMHGGRIWVESEPGKGSTFTFEVPV 559 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 50/150 (33%), Gaps = 5/150 (3%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +E R + + + ++ E ++D + I + + +L N ++FG+ Sbjct: 63 RWMELENTLTLYRKAEEDLREKDQMYRALFEMSNDAVIISDGK-KVLDINNKGCEIFGFR 121 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 E L F+ S + L E E +++ + + + + Sbjct: 122 EERPLNVSLISFIPPEYLSELQQALKETFKQASSC---FEMRYQKAEGEIVDIEVSLSLI 178 Query: 549 PFSSCYS-LTMHDISEWKQEKNKLSHAKKI 577 ++ + DI+ K + ++ Sbjct: 179 DRNNNIIHIVAQDITGVKNAERLEQENRER 208 >gi|217975276|ref|YP_002360027.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500411|gb|ACK48604.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1629 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 125/782 (15%), Positives = 277/782 (35%), Gaps = 68/782 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 D G + ++ + G +G C + I ++L + + T Sbjct: 363 DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFSEVLAGKTSLNRIT 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 + +G++L A+PIY + + +G + + L L+++ Sbjct: 423 SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEK 258 + + + D +QQ + + + + ++ ++ Sbjct: 479 VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYSREQLVGKTH 538 Query: 259 YPLLTSEESSLPEQEDFHTINLN---------------QYTKKQYFGTLQNNSKESFEYL 303 L + E + + + IN G + + + ++ Sbjct: 539 AILKSGEHDASFWRAMWQQINAGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + GN+ N L Y + Sbjct: 599 ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKP------------VMLYRSDRTCIAASARLHTIQW 405 + I + L + + + + R++ + R T Sbjct: 659 EMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFIYKARAEGS----ETRNWTYVR 714 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + ++ + E + GI + + ++ + L E GI Sbjct: 715 KDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASSHLSKAAEVAQLGI 774 Query: 466 AIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 N G L N + ++ + + + +++ + + + + L + Sbjct: 775 WTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTA 834 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + + + I++ + DI+E +Q + L AK+ A+ Sbjct: 835 QYDPIFRVVRTDGSIRYVQAAAQIERDKQGNAIRVIGINLDITEQQQLEETLRKAKQEAD 894 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S+ KS FLA +SHEIRTP+ A++G ++I+ + +Y N + +L Sbjct: 895 AASAAKSAFLANMSHEIRTPMNAVLGMLQLIQYTSLSR----QQQDYVNKTQTAAKSLLG 950 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD SKI++GK+ L P S++ + + ++ +K + + +P +L Sbjct: 951 LLNDILDFSKIDAGKLALDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLL 1010 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEK 755 AD ++QI +N+ NA+ FT G I+ I + V + + DTG+G+++ ++E+ Sbjct: 1011 ADQLRLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIER 1070 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDT 813 F Q +S R GTGLGL ++K ++ + ++ S G+ + FP+ Sbjct: 1071 IFTGFEQAESSTSRRFGGTGLGLAISKRLIGLMGSELHVTSKVGVGSRFWFDVTFPIIQV 1130 Query: 814 SH 815 Sbjct: 1131 EE 1132 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 112/426 (26%), Gaps = 35/426 (8%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + EF G RGFG + RV + A ++ + + + E+Y I Sbjct: 92 TRDVDHEFPGARGFGFIR--RVPSADEAAFIARVRQDDWPDFNIRQLHAHDGERYVIEYI 149 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P R K V AH+ + + + + + Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 + ++ P N Sbjct: 207 IY--------------------RTGLVPKTQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + DI A + + + D + Sbjct: 247 MTKLF----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRQWQIEVIAYPSFI 302 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ + + I + + ++ + + + S+LE + DGI Sbjct: 303 KSLHLNQPSLVLLSGCLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G I S N+ +LFGY L + + + L + L + Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFSEVLAGKTS-LNR 420 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583 IT ++ LS + T+ DI+ + + + E++ + Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480 Query: 584 HKSDFL 589 ++ L Sbjct: 481 KRTHAL 486 Score = 91.6 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 38/389 (9%), Positives = 103/389 (26%), Gaps = 29/389 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 D +G + E+++ + G +++G + S + + +W+G+ Sbjct: 509 TDPNGVILEVNDNFCRISGYSREQLVGKTHAILKSGEHDASFWRAMWQQINAGQSWHGEI 568 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205 T + + P++ + F I +R LG L Sbjct: 569 CNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVLD 626 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E+ + V+ + + T H + + L Sbjct: 627 AASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAEY 686 Query: 266 ESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + F + +Q+ ++++ E YL Sbjct: 687 GKDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDI 746 Query: 310 SLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 SL + + + + + + ++ GN N + Y + + G Sbjct: 747 SLMLLQQQALMTASSHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQG 804 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 D+ A L + ++ + + + + ++ Sbjct: 805 LTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDPIFRVVRTDG-SIRYVQAAAQIERDKQ 863 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + GI + + + + + + Sbjct: 864 GNAIRVIGINLDITEQQQLEETLRKAKQE 892 >gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 880 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 117/666 (17%), Positives = 240/666 (36%), Gaps = 46/666 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 D + + + ++ ++ + V+ L A Sbjct: 89 ADVEMDVRQMIQGQLVVRTASMVADVLAINDLTDKYMYRERRWMLAWTASAVAFLAGVVA 148 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFH-------TINLNQYTKKQYFGTLQNNSKESFE 301 +L+ + S E++ + N F ++ +E Sbjct: 149 ALLYILQRRVVSPVVSLEAATKALSIGRLDHPIRVSGNDEVAKLAASFEDMRVALRERLA 208 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVD 358 LS N + A + + + F + + Y NPS + + + Sbjct: 209 DLSKANRRAQEARDESEKRAAELDAALMSLAEGIIFYNTEHQITYLNPSAEKILGFSLEN 268 Query: 359 DIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI- 416 + A L KL + K ++ I + + Sbjct: 269 VSDLPADARVKLFTVRKLDGSIPTKEELVGWRALHGATVHGEEFIIYPQGSSLSSNILSS 328 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIIL 475 + + + + + + SI + + + + + G ++ Sbjct: 329 AAPVRTSDGRTLGAIQTLVNITERKRTEEALRESEERYRSIFHNSHAVMLLADPQTGELV 388 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A +GY E+ R + + ++ ++ + Sbjct: 389 DVNPAACAYYGYSPEECRRMTIGQI----NTLPIEEFRARMMEAASKEQNKFEFRHRLAS 444 Query: 536 EKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 ++ + + + L +HDI+E K+ + L AK AE + KS+FLA +S Sbjct: 445 GEVRDVEVYSGPVRVEGRLLLHSIVHDITERKRLEEDLFQAKAEAEAANRAKSEFLASMS 504 Query: 594 HEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 HEIRTP+ +IG +E + + G + +Y + +S N +LDI+ND+LD+SKIE+ Sbjct: 505 HEIRTPMNGVIGLTELALMQEPKG-----KVRDYLGLVKQSANSLLDIINDILDLSKIEA 559 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G++ L L + + ++L A KR+ + +P I D ++QI +N+ Sbjct: 560 GRVELENADFDLRDMLDSLFETMRLTAERKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNL 619 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE--------------VILRVRDTGVGMTNYELEKAM 757 + NA+ +T +G Q+ + + + +++ V+DTG+G+ +LEK Sbjct: 620 IGNAVKYTETG-QVSVHVGLENAHDSPVAGDSDKPEHICLLVSVKDTGIGIPKNKLEKIF 678 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--F-PLYDTS 814 PF ++ + +GTGLGL + +V+ G+ + S P +G+ P DT+ Sbjct: 679 DPFDT--GARGAKHDGTGLGLTITNRLVELMGGRIIVRSEPGQGSTFTFSAALEPASDTA 736 Query: 815 HPHDCI 820 + + Sbjct: 737 TTQESL 742 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 35/407 (8%), Positives = 105/407 (25%), Gaps = 56/407 (13%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLC---DVSDILHIDP------NNHIGDLLKRQNT 142 + ++ K +G + + + + +D L T Sbjct: 248 EHQITYLNPSAEKILGFSLENVSDLPADARVKLFTVRKLDGSIPTKEELVGWRALH-GAT 306 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G+ + +G++L I +A P+ + + G + + ++ Sbjct: 307 VHGEEFIIYPQGSSLSSNILSSAAPVRTSDGRTLGAIQTLV--NITERKRTEEALRESEE 364 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM---KNKVSSLTEYYAHKDDVLKTEKY 259 ++ + + + +P + +T + + + Sbjct: 365 RYRSIFHNSHAVMLLADPQTGELVDVNPAACAYYGYSPEECRRMTIGQINTLPIEEFRAR 424 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + + + Y G ++ + + H D + Sbjct: 425 MMEAASKEQNKFEFRHRLASGEVRDVEVYSGPVRVEGRLLLHSIVHDITERKRLEEDLFQ 484 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 AN + FL ++ + GL+ L + Sbjct: 485 AKAEA-----------------EAANRAKSEFLASMSHEIRTPMNGVIGLTELALMQEPK 527 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ +S + + + + E + + Sbjct: 528 GKVRDYLGLVKQSANSLLDIINDILDLSK--------------IEAGRVELENADFDLRD 573 Query: 437 DVDTRINKRKMEIEVMQLC--SILE-ATSDGIAIINREGII--LSTN 478 +D+ ++ E +L + ++ D I EG + + N Sbjct: 574 MLDSLFETMRLTAERKRLSFTAAIDPGVPD--WIKGDEGRLRQIFVN 618 >gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii GP-6] Length = 656 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 111/498 (22%), Positives = 197/498 (39%), Gaps = 23/498 (4%) Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + ++ + + V S G Y NP+F + + I + L+ Sbjct: 23 EIDKDFAHQVMATVGQGIVVSSEGWRFEYVNPAFARMVGRMPKELIGR--SMDELIHPHD 80 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + R + ARL I+ + Q + Sbjct: 81 RP---ILIQARSRRQAGETSSYEARL--IRSDGCVFPVQVTG--TPRWQDGKFFGSIVAV 133 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + +++ + +L++ D I ++++EG L S + P E + Sbjct: 134 TDLTERKRFEDELKKSEAENRLLLDSIPDSIFLLDKEGNFLDYRTPNSSILYAPAELFMG 193 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 K + Q+ + + + Q E ++ I L + Sbjct: 194 KNIHSIMPQDLVELTMNNIEMARQSGKMQVFEYQLP---ANGEIKHFEARIN-LCEGGDF 249 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + D++E K+ L AK+ AE + KS+FLA +SHEIRTPL A+IG Sbjct: 250 LALVRDVTERKRSDEMLWKAKEEAEAAAKAKSEFLANMSHEIRTPLNAVIGL----TGLL 305 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P Y + S + +L ++ND+LD SKI+ G M L P L + + L Sbjct: 306 LDTDLTPEQRNYLEIVRNSSDSLLSVINDILDFSKIDGGMMELEHSPFDLRRCIESTMDL 365 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--- 730 + EK ++++ + +P ++ D ++Q+ N+LSNA+ FT G + +S Sbjct: 366 MVTRVAEKGLVLKVVLDDQLPTMLVGDASRLRQVLANLLSNAVKFTDKGF-VEVSVRGNA 424 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E+ V DTG+GM +L++ PF QI +S R GTGLGL ++K +V G Sbjct: 425 IPEGFELRFDVLDTGIGMPQDKLDRLFMPFSQIDSSITRRYGGTGLGLAISKRLVGMMGG 484 Query: 791 KFYIFSTPAKGTLIEIIF 808 + + S P G+ Sbjct: 485 RIWAKSNPGVGSTFTFTI 502 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 43/137 (31%), Gaps = 5/137 (3%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + ++ + +G ++IG + ++ + T + L + Sbjct: 48 RFEYVNPAFARMVGRMPKELIGRSMDELIHPHDRPILIQARSRRQAGETSSYEARLIRSD 107 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G P+ + P + ++ +F G V K+ + + L + Sbjct: 108 GC--VFPVQVTGTPRW-QDGKFFG--SIVAVTDLTERKRFEDELKKSEAENRLLLDSIPD 162 Query: 214 HSSVEKEKYDIFSQQSP 230 + ++ + ++P Sbjct: 163 SIFLLDKEGNFLDYRTP 179 >gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 842 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 120/681 (17%), Positives = 234/681 (34%), Gaps = 78/681 (11%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---- 244 + A ++ ++ + E G + S + ++ S+ Sbjct: 24 RLQERLAEAEKSERLLKSILEYIPGGLIYAEAPDVSIRAVSRYGQQLIGRQLESIEGRTG 83 Query: 245 ------EYYAHKDDVLKTEKYPLL-----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 H D V + E L E E+ + + + G ++ Sbjct: 84 PEIQESWKLLHPDGVTQAEHEELPLVRAVAKGEDVREEEWVLFRPDGEKIPILIHAGPVR 143 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--------YAN 345 + L+ +E + + + G + + Sbjct: 144 DEQGTIIGGLASLIGMEKRRQIEERLRESEKRFR---LAISAARMGAYSRNLQTGQDHWS 200 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P FL + + + G+ + A V R+ H I Sbjct: 201 PEFLAIYGLGPDEPLPFLDGIPAAVHPEDRPRVLAEARVFFGRTVEQEFCNE---HRIVR 257 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSIL 458 + + + + + + G+ + + + + + E + +L L Sbjct: 258 SNGEIRWVMILGKMEFDLAGKPHVIYGLGMDVTERKQAEEALQQAKEKAEQQANELREAL 317 Query: 459 --------------EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 E G+ + + G + + KL +E+ +T L Sbjct: 318 QRLSESEQRYRVMGETIPYGVWMCDPNGKATYVSPSFCKLLDMTLEEQNDFGWTHRLVPE 377 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 M E K+ + ++ + + + D Sbjct: 378 DVDPMMDKWIGCCCTGKPW--EHEHRIVAKDGGIRTVLSKGLPIRHENGKIACWVGVNLD 435 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K + L AK+ AE + KS+FLA +SHEIRTP+ IIG +E+ Q Sbjct: 436 ITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTELALMQE----PK 491 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +Y + +S N +LDI+ND+LD+SKIE+G++ L L + + +++ A Sbjct: 492 AKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAE 551 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734 K + T+ +P I D ++QI +N++ NAI +T +G Q+ + Sbjct: 552 RKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEAG-QVSVRVGVEDGRGAQD 610 Query: 735 -------EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 E V L V+DTG G+ +L + +PF ++ + +GTGLGL + K +V Sbjct: 611 AGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDT--GARSAKYDGTGLGLAITKRLV 668 Query: 786 DANMGKFYIFSTPAKGTLIEI 806 + G+ + S +G+ Sbjct: 669 ELMGGRITVQSELGRGSTFSF 689 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 8/195 (4%) Query: 33 GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDA 91 G + + K+ ++ N+ + SE+ + + T+ + W D Sbjct: 286 GMDVTERKQAEEALQQAKEKAEQQANE--LREALQRLSESEQRYRVMGETIPYGVWMCDP 343 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLW 150 +G +S K + + +DP W + + Sbjct: 344 NGKATYVSPSFCKLLDMTLEEQNDFGWTHRLVPEDVDPMMDKWIGCCCTGKPWEHEHRIV 403 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G + LPI N + G+ ++ + ++ Sbjct: 404 AKDGGIR--TVLSKGLPIRHENGKI--ACWVGVNLDITERKMMEEDLRQAKQAAEAANQA 459 Query: 211 KKGHSSVEKEKYDIF 225 K + + Sbjct: 460 KSEFLASMSHEIRTP 474 >gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Cyanothece sp. CCY0110] Length = 1191 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 130/684 (19%), Positives = 250/684 (36%), Gaps = 57/684 (8%) Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 AL R+ E F G I + N +G + L + VE Sbjct: 392 ALHRARRDCEPVLFTGLHIDREDEELNVSLRVG--CNPNNPALADYLIVILEVEGISPKS 449 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + +++ + + L+ L T+ E E+ N Sbjct: 450 GAALRFDVDSEAAQQITEMEYELQQTRENLQITIEELETANEEQQATNEEMLAANEELQG 509 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFY 343 + ++ Y + + + + + + I F+ N+ Sbjct: 510 TNEELQSVNEEL-----YTVNSEYQNKINELTQLNDDMNNLLRSTNIGVVFLDRQLNIRK 564 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 P+ K D L++ LD P L + L ++ A R I Sbjct: 565 FTPAATRAINLKPADIGRPLADLTSKLDCPDL--------LTLLQTVLETENAEQREVNI 616 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 L + + + + + ++ L ++ + Sbjct: 617 PSTDGTLLMQIN---PYWREDDTSDGIVLSFIDIDELEKVQHQLHQANAILENLYATSPV 673 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G+ + + E + N+++ + +G VED L K + + + L ++L + Sbjct: 674 GLCLYDHELKFVRINQSLVESYGLEVEDALGKT-SSEVLPELGRQIEPLLRQVLETNAP- 731 Query: 524 TLEKITLGSTK-----EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 + G T E+ + + L M DI+E ++ L ++ Sbjct: 732 IISIELRGRTPADPAAEKVWSASYYPVDVLEDQCGVGGVMIDITERTHAEDSLRESEAQL 791 Query: 579 EK-----------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + KS+FLA +SHEIRTP+ +I GFS+++ + NP Sbjct: 792 IQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSICGFSDLLLRSQL----NP 847 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + + N +L ++ND+LD SKIE+ K++L+ +L+ + E A Sbjct: 848 KQRHWIEILQANSNRLLALINDILDFSKIEARKLHLNPREFNLETLLQEVRFSFTPQAER 907 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--- 737 K + + ++PR ++ D ++Q+ N++SNAI FT +G ++ I+ + EV Sbjct: 908 KGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAIKFTETG-EVKIAVSQQGETEVNGG 966 Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V+DTG+G++ E +PF Q+ +S R GTGLGL + + +V G+ Sbjct: 967 IIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSATRRYGGTGLGLTICRRIVQLMGGEI 1026 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S G+ PL HP Sbjct: 1027 HVDSEVDVGSTFWFTVPLQQPDHP 1050 Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 61/261 (23%), Gaps = 11/261 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148 D I++ L ++ G +G +V L + +L+ Sbjct: 679 DHELKFVRINQSLVESYGLEVEDALGKTSSEVLPELGRQIEPLLRQVLETNAPIISIELR 738 Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 P + V + P+ + G G I + + + Sbjct: 739 GRTPADPAAEKVW-SASYYPV-DVLEDQCGVGGVMI--DITERTHAEDSLRESEAQLIQQ 794 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + ++ + +S + + D +L+++ P Sbjct: 795 KEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSICGFSDLLLRSQLNPKQRHWIE 854 Query: 268 SLPEQEDFHTINLNQYTK----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 L + +N + L L +G LT Sbjct: 855 ILQANSNRLLALINDILDFSKIEARKLHLNPREFNLETLLQEVRFSFTPQAERKGLQLTH 914 Query: 324 ETVDKCPIPFFVYSHGNLFYA 344 E P + L Sbjct: 915 EIEPDVPRH-LIGDDFRLQQV 934 >gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE [delta proteobacterium MLMS-1] Length = 794 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 124/690 (17%), Positives = 251/690 (36%), Gaps = 25/690 (3%) Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++P EG + +DL P+ R R I + AL R+ Sbjct: 109 IRYVYPREGNEEALGMDLYNHPVQGAATRRMMEARTMVIAGPVTLVQGGEALIVRIPIFH 168 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLT 263 + + ++ + + D+ +++ +L + P L Sbjct: 169 ENQADGRRAYWGMTSIPVDLDGFYQRVGLQETASRLQIALRGHDGLGAAGEVFFGDPKLF 228 Query: 264 SEESSLPEQEDFHTINLNQ---------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + E + + ++ L L + Sbjct: 229 AAEPVIQRVDLLAGTWQLAGKPPGGWQVPWSQRLPWLLGGLLGALLVGLVGGKLTAQRER 288 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E V+ + G + + N L Y + + +++ Sbjct: 289 LRHSEAGYRELVENVNSIVLRWRADGTITFINEYGARLFGYTPRG-LVGRSVVGSIVPEN 347 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + S + K + I + L +++ + + I Sbjct: 348 ESSGRDLAKMMADVAQHPEKYH-DNENENICRDGSR-LWISWNNRVVYDATGAVVEILSI 405 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKLFGYPVED 491 + R + ++ + +++ + E + + + + GYP + Sbjct: 406 GRDHTRRRHIELALKNSERRFRTMVGHIYGAVYRCLPESPWAVEFVSEPIGDITGYPARE 465 Query: 492 IL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + R+ + + H +++ ++ LE + + + E+ + R Sbjct: 466 FMEGRRNLEEIIHPAERDRIAHEVSQAVAEGRPYVLEYRIINNERVERWVHERGQAVVDE 525 Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + + DI+ K+E+ +L A+ A+ + KS+FLA +SHE+RTPL AIIG+SE Sbjct: 526 DGVTWLDGVIFDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSE 585 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + G E I + +L ++N++LD SK ESG+++L E LDE + Sbjct: 586 ILLEEA-EEHGLEGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELM 644 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + +++ E+ + + I D ++QI N+LSNA FT G I + Sbjct: 645 AAVVDIIRPLLPERENRLLVETEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGF-ITLR 703 Query: 729 TTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 T E V + ++DTG+G++ + +K KPF Q +S R GTGLGL +++ Sbjct: 704 TRRLMRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFC 763 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G + STP +G+ + P+ + Sbjct: 764 RMMGGDIALVSTPGQGSTFTVSLPVSPDNQ 793 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 39/379 (10%), Positives = 93/379 (24%), Gaps = 23/379 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQN 141 W A G + I+E + G ++G + + + ++ + Sbjct: 310 WR--ADGTITFINEYGARLFGYTPRGLVGRSVVGSIVPENESSGRDLAKMMADVAQHPEK 367 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + +G+ + I +Y G + K + Sbjct: 368 YHDNENENICRDGS--RLWISWNNRVVYDATGAVVEILSIG--RDHTRRRHIELALKNSE 423 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++F + G +SP + + +T Y A + + + Sbjct: 424 RRFRTMVGHIYGAVY-------RCLPESPWAVEFVSEPIGDITGYPAREFMEGRRNLEEI 476 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E E + + + N E + + + + Sbjct: 477 IHPAERDRIAHEVSQAV-AEGRPYVLEYRIINNERVERWVHERGQAVVDEDGVTWLDGVI 535 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 T K V + AN + FL ++ + G S +L Sbjct: 536 FDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHG 595 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R ++ + + + + + E M + Sbjct: 596 LEGCAEDIQRIREAARHLLGLINEV-LDFSKTESGRISLTMEECDLDELMAAVVDIIRPL 654 Query: 439 DTRINKRKMEIEVMQLCSI 457 R + +L +I Sbjct: 655 LPERENRLLVETEEELGTI 673 >gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1236 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 114/594 (19%), Positives = 204/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + Sbjct: 381 PASRLLTHLEACSQTPIRPPEKITRGWEPWFALVSRIFEEN-----------RQYTHHLA 429 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 QN ++ + + + L +D P F G N S Sbjct: 430 EQNKRLDNLVARRTQRLRETTERREREFALLRSLIDSIPEAIVFKDKEGKYLGCNKSAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I + + K + S R + Sbjct: 490 MLGYTENEIIGLTSSEVVSPEQGLRIGEEDNKVLTQQHSLRYQERVNIE--------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + N+ + + + + ++ + + ++A DG+ I Sbjct: 542 VLLDTFKLPFYNRRGDLLGLISVWRDITREYEAAEQLRMSEQRYHLAMDAVEDGLWDWYI 601 Query: 469 NREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + + + + Y + + + T E Sbjct: 602 DSEQII--CNPAFYSMLGYQANEFPPLLESIDELYHPDDRERVQEYRAQYVRDPV-GTYE 658 Query: 527 KITLGSTKEEKLLSL-----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + + S T DI+ K + L AK+ AE Sbjct: 659 IEFRMRGKNGLYFWVLSRGRAVEFSEDGCSKRMLGTHKDITRQKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y N S +L I+ Sbjct: 719 NMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTV----QQQDYLNKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LAD 700 ND+LD SKIE+GK+ L LD+ + I + + A EK + + I D Sbjct: 775 NDILDFSKIEAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTAGLILYGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT +G + E + VRDTG+G++ + Sbjct: 835 PLRLGQVIVNLLSNAVKFTQTG---EVELGCEDVGERDDRITMKFWVRDTGIGISKDQQA 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q S + GTGLGL ++K +V G + S G++ Sbjct: 892 MLFDAFSQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIFSFTI 945 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 22/262 (8%), Positives = 70/262 (26%), Gaps = 15/262 (5%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137 + D G ++ + +G ++IG+ +V + +L Sbjct: 465 DSIPEAIVFK-DKEGKYLGCNKSAERMLGYTENEIIGLTSSEVVSPEQGLRIGEEDNKVL 523 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 +Q++ + + V +D LP Y+R + G + + + Sbjct: 524 TQQHSLRYQE---RVNIEGKPVLLDTFKLPFYNRRGDLLGL--ISVWRDITREYEAAEQL 578 Query: 198 KRLDKKFSHLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHK 250 + ++++ + + + I + N+ L E Sbjct: 579 RMSEQRYHLAMDAVEDGLWDWYIDSEQIICNPAFYSMLGYQANEFPPLLESIDELYHPDD 638 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHP 309 + ++ + + + + N + ++ + S L Sbjct: 639 RERVQEYRAQYVRDPVGTYEIEFRMRGKNGLYFWVLSRGRAVEFSEDGCSKRMLGTHKDI 698 Query: 310 SLSAYFDEGENLTPETVDKCPI 331 + + + + + Sbjct: 699 TRQKSNEVALLEAKQDAELANM 720 >gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] Length = 587 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 947 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 111/619 (17%), Positives = 227/619 (36%), Gaps = 26/619 (4%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + +V + + + R +++ + K + Sbjct: 192 RDGLLTASADARILAVNRAYCTLLGYEEQELLGRSIHEIEANETMEEVDAHTRKIVEQGF 251 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + L+ + L + L R + L Sbjct: 252 DRFISRHRCKDGTTRDLELSISYIAEVGQFLTIARDVTERLLLERQLLDSEQRYQAFTEL 311 Query: 322 TPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + G + + F +T Y + + + + L L P + Sbjct: 312 SSDF-----CHVCSRTAGGPYRVQWIGGQFERITGYGNDELLALGCWLP--LVHPDDRER 364 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + L D + ++ + + P+ + G + Sbjct: 365 VAAGLLRLSAGDE----LRSEFRLVRKDLVVRWISEHSRCVQDPVNPDLLRLYGSARDIT 420 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497 N ++ +I AT+D I I++ + G+I+ N+ +LFG P D++ Sbjct: 421 TVHDNTLALQTAENAYRTIFNATNDVIFIMDAQQGMIIDCNKQAVQLFGRPRVDLIGSNP 480 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLS--LRIIIKKLPFSSCY 554 + P + + + + L + + + + ++ Sbjct: 481 VQLSPPDHPDFGFEQAAAHIRSAIEEGAQLFEWLCARPDGSTFWAEVSLRAAEINGRQRL 540 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DISE KQ +L A+ A + ++ K++FLA +SHE+RTPL I+G S++++ Sbjct: 541 LAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNGIMGLSQLLRTTS 600 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y + +D S +L ++ND+LDIS+IE+G + + S + + E + Sbjct: 601 L----TEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAFSPAKLLREVAGM 656 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 + A EK I + + +P ++ D ++Q+ +N++ NAI FT GG + + Sbjct: 657 YEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSHGGVTLRVDCLEE 716 Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 S + V D+G+GM+ L+K PF Q S G+GLGL + + + + G Sbjct: 717 SATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLGLAICRRLSELMGG 776 Query: 791 KFYIFSTPAKGTLIEIIFP 809 S+ +G+ + P Sbjct: 777 SIRAESSLGQGSRFIVELP 795 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 36/377 (9%), Positives = 93/377 (24%), Gaps = 29/377 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A + ++ +G +++G + ++ ++ + + Q + Sbjct: 200 ADARILAVNRAYCTLLGYEEQELLGRSIHEIEANETMEEVDAHTRKIVEQGFDRFISRHR 259 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +GT + + ++ + +F I ++++ E+ Sbjct: 260 CKDGTTRDLELSISYIA---EVGQF-----LTIARDVTERLLLERQLLDSEQRYQAFTEL 311 Query: 211 KKGH----SSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 S Y + + + + H DD + L Sbjct: 312 SSDFCHVCSRTAGGPYRVQWIGGQFERITGYGNDELLALGCWLPLVHPDDRERVAAGLLR 371 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSAYFDE 317 S L + +L ++ +Q+ + Sbjct: 372 LSAGDELRSEFRLVRKDLVVRWISEHSRCVQDPVNPDLLRLYGSARDITTVHDNTLALQT 431 Query: 318 GENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 EN + F+ G + N + L VD I L P Sbjct: 432 AENAYRTIFNATNDVIFIMDAQQGMIIDCNKQAVQLFGRPRVDLIGSNPVQ---LSPPDH 488 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D + RS A + + A + + N + Sbjct: 489 PDFGFEQAAAHIRSAIEEGAQLFEWLCARPDGSTFWAEVSLRAAEING---RQRLLAVVR 545 Query: 436 EDVDTRINKRKMEIEVM 452 + + + + ++++ Sbjct: 546 DISERKQSMQELQQARD 562 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 7/231 (3%) Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 E GL+ A +D ++ + N L M P + Sbjct: 89 EHVVGLAPRYFAAGAADLFPKDELLRQLQVECYLGVPLYSSR-HEPLGNLLLMDSKPLPE 147 Query: 421 ANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 A P + ++++ I+ + L IL + DG+ + + IL+ Sbjct: 148 ALVPPALKLMELFALRTAGEIERAEREQQLAIQDIHLGIILNNSRDGLLTASADARILAV 207 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NRA L GY +++L + T ++ + +I+ + + + K+ Sbjct: 208 NRAYCTLLGYEEQELLGRSIHEIEANETMEEVDAHTRKIVEQGFDRFISR---HRCKDGT 264 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 L + I + + D++E + +L +++ + + SDF Sbjct: 265 TRDLELSISYIAEVGQFLTIARDVTERLLLERQLLDSEQRYQAFTELSSDF 315 >gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 1013 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 125/605 (20%), Positives = 238/605 (39%), Gaps = 29/605 (4%) Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 Y P + + + + + + + L L E Sbjct: 136 AAYRDIRVLIPATLIVAADHLIRGLLWPESIFGIAAADNWRWLEHSAWVLFEDVFLILTI 195 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSH 338 + + + E L+ + E T + + + Sbjct: 196 RQSLAEVHALAMKTTEGELAVERLAIAKR-----LAEHNEAQFRATFEYAAVGVAHIGFD 250 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G N + Y + ++ K D+ ++ + + A Sbjct: 251 GYWLRTNKKICEMLDYSEQE-LQRLTFADVTCPEDKEIDDRHLQDFL----NGEIEEACF 305 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLC 455 + N E A I + + + + + R + +E E+ +L Sbjct: 306 EKRYVNRNGEIIWARLTISVIRDDA-----YFIVVIEDIREERQAREDLEKSNREIHKLS 360 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLT 514 + + I ++ G I N A ++L GY + +I+ + L+ T Y+ Sbjct: 361 LVAAKARQSVIIADKFGRIEWVNDAFTQLTGYALPEIIGQKPGTLLQGPETDPSTAAYIG 420 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572 E L R ++E + + E+ ++L I + T +++ K+ + +L Sbjct: 421 ERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHRKKHEAELR 480 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK+ AE ++ KS+FLA +SHEIRTPL ++GF++++ R + EY I Sbjct: 481 RAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLL--RGAANDPQKRDEYLQIIRT 538 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +LD++NDLLD+SKIE+GK+ P V+E +S++++ A+EK + + ++ Sbjct: 539 SGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALRLTCDWSG 598 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTN 750 +P I+ D ++Q+ N++ NAI FT G + I + +++ +RDTG+G+ Sbjct: 599 EVPPQIVTDSVRLRQLLTNLIGNAIKFTQFGS-VSIDAGWHAPLQQLTFVIRDTGIGIPE 657 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-- 808 +L+ PF Q + R GTGLGL + + + G + S G+ + Sbjct: 658 EKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGSTFTVTIAA 717 Query: 809 PLYDT 813 PLYD Sbjct: 718 PLYDA 722 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 63/229 (27%), Gaps = 13/229 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 D G ++ +++ + G ++IG + + DP+ IG+ L+ + + Sbjct: 374 DKFGRIEWVNDAFTQLTGYALPEIIGQKPGTLLQGPETDPSTAAYIGERLRSRERVSVEI 433 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + ++ I L P++ F A +R + Sbjct: 434 VNYSK--SSEKYWIALEIEPVFDEQHRLIQF--IATQTNVTHRKKHEAELRRAKETAEAA 489 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K + + P + L A+ + TS + Sbjct: 490 NAAKSEFLANMSHEIR-------TPLNGLLGFTDLLLRGAANDPQKRDEYLQIIRTSGRN 542 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L D ++ + K + + E +S + Sbjct: 543 LLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALR 591 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 31/366 (8%), Positives = 102/366 (27%), Gaps = 30/366 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY-GK 146 I GY ++++ + + ++ + DV+ + ++ + D L + + Sbjct: 247 IGFDGYWLRTNKKICEMLDYSEQELQRLTFADVTCPEDKEIDDRHLQDFLNGEIEEACFE 306 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK---K 203 G ++ + ++ I ++ R + R ++ ++ K Sbjct: 307 KRYVNRNGEIIWARLTISV--IRDDAYFIV------VIEDIREERQAREDLEKSNREIHK 358 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYP 260 S + + + + I L + + + + Sbjct: 359 LSLVAAKARQSVIIADKFGRIEWVNDAFTQLTGYALPEIIGQKPGTLLQGPETDPSTAAY 418 Query: 261 LLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + ++ + +Y + + ++++ + + + + Sbjct: 419 IGERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHRKKHEAE 478 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ET + + AN S + T + G LL Sbjct: 479 LRRAKETAEAANAAKSEF------LANMSHEIRTPLNGL-----LGFTDLLLRGAANDPQ 527 Query: 379 NAIKPVMLYRSDRT-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + R+ + L + L +P + E + ++ ++ Sbjct: 528 KRDEYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADE 587 Query: 438 VDTRIN 443 R+ Sbjct: 588 KALRLT 593 >gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 755 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 131/589 (22%), Positives = 246/589 (41%), Gaps = 23/589 (3%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P++++++ +L Y D + ++ + Sbjct: 167 PYVQLEDGRVALPMAYPILDWLGTPRGVV-----ATARSLDHLAKAVAPPILPDGARLLV 221 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP--SFL 349 L+++ + E + ++F P Sbjct: 222 LKSDGTVLARVPALSGDAPAITPVPELREAAARGRGGSFTAIAITGETSVFGVAPLGRMA 281 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 T +E+ GG ++ + + S+R Q Sbjct: 282 PETMVAVTMPVEMLGGSERQFLRMAVTAFGIAGSGAVL-----LLWYSSRRLLFQPLGRL 336 Query: 410 SLAMTFIPFEK-ANQFPENMPQNGIEPEDVDTR-----INKRKMEIEVMQLCSILEATSD 463 + AM + A + + + G + DT + ++ + + E + Sbjct: 337 AGAMRRVRAGDMAARAGGGIGEVGEMGDTFDTMVGALNEREARLTESEDRFRATFEQAAV 396 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G+ + + N +++ G ++++ + + F + + + I+ R+ Sbjct: 397 GMCHTTLDRRFIRINSRFAEMLGCAPQELIGRSASDFTHPDDRKLGLDGIDHII-QGTRE 455 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + K+ ++ + + L DIS K+ +++L AK+ AE Sbjct: 456 SNSIEKRYLRKDGTIVWANLTVSALRRDGQVEYIIGVAEDISWRKRAEDELRAAKEQAES 515 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 S KSDFLA +SHE+RTPL AIIGF+E + +Q GP+ RY EYA I SG +L I Sbjct: 516 ASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMP-ERYREYAGDISASGRHLLGI 574 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 + D+LD++KIE+G+M L P+ + V A+ L++ + + + +P+++AD Sbjct: 575 ITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRGAAAGLNLISDLPPGLPQVMAD 634 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R ++Q+ +N+L+NA+ FTP GG++ +S + T + + L V DTG+GMT E + ++PF Sbjct: 635 ERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLELHVSDTGIGMTEEEAAQVIEPF 694 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ R EGTGLGLP+ A+++ + G I S P GT + + FP Sbjct: 695 VQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPDAGTRVTVTFP 743 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 33/359 (9%), Positives = 82/359 (22%), Gaps = 21/359 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTWYGKTTL 149 I+ + +G ++IG D + +D +HI + + + Sbjct: 406 RFIRINSRFAEMLGCAPQELIGRSASDFTHPDDRKLGLDGIDHIIQ--GTRESNSIEKRY 463 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT ++ + ++AL R+ + G+ + ++ Sbjct: 464 LRKDGTIVWANLTVSAL---RRDGQVEYI--IGVAEDISWRKRAEDELRAAKEQAESASR 518 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEESS 268 K + + M ++V + + LL Sbjct: 519 AKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMPERYREYAGDISASGRHLLGIITDI 578 Query: 269 L------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 L + + + L + + + P E Sbjct: 579 LDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRGAAAGLNLISDLPPGLPQVMADERRI 638 Query: 323 PETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + V + G + S + G +A ++ + Sbjct: 639 RQVVINLLANAVKFTPFGGRVTVSASLTPDGGLELHVSDTGIGMTEE--EAAQVIEPFVQ 696 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + R + I ++A+ P P+ Sbjct: 697 VDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPDAGTRVTVTFPPRRIFAVTATGR 755 >gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1139 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 114/536 (21%), Positives = 219/536 (40%), Gaps = 53/536 (9%) Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + + +D + G + NP+ L Y + I + Sbjct: 240 DARTKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQNVAIF 299 Query: 368 TLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + D+ + +M R D + + ++ + + Sbjct: 300 LPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQRKDGQLFPIALSVSLMKIDNK----- 354 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + G+ + D + + L + L A+ D + I+ +G Sbjct: 355 --------------VMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLITIDIDGR 400 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEK--ITL 530 ++ N A ++LFGY + + + + + + + K L Sbjct: 401 VVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIINKRIELL 460 Query: 531 GSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + K + L ++ KL ++ + DISE K + KL AK+ AE + KS F Sbjct: 461 ATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELGNKVKSRF 520 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIR+PL AI+G E++ + + N +AN +G+ +L+ +ND+LD S Sbjct: 521 LATMSHEIRSPLNAILGGVELLLHSKL----NKEQRIHANITREAGSALLNTINDILDFS 576 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 KIE+G+M L D+ V++ + +++ A +K + + + N+P+ +L D + + Q+ Sbjct: 577 KIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQV 636 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763 N++ NAI F+ SG I + N++ + RV D+G+G++ K K F Q+ Sbjct: 637 IHNLVDNAIKFSVSG-TITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQV 695 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 ++ +GTGLGL + + ++ G+ + S KG L PH+ Sbjct: 696 HDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKGCCFTFYVSL----QPHEA 747 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 IP + ++ + + VD R + +E ++L +IL++ DG IIN +G I Sbjct: 217 IPVKGKDEIAQMGKAFNNMIDKVDART--KALEAANIRLNTILDSAVDGFVIINDKGTIT 274 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533 N A+S+LFGY +++ + +FL S + ++ + L + Q + + + Sbjct: 275 DINPAISRLFGYAHNELIGQNVAIFLPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQR 334 Query: 534 KEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K+ +L L + + K+ + + D+S+ K+++ + + + + D L Sbjct: 335 KDGQLFPIALSVSLMKIDNKVMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLIT 394 Query: 592 V 592 + Sbjct: 395 I 395 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 70/254 (27%), Gaps = 23/254 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI----DPNNHIGDLLKRQNTWY 144 ID G + E + + G + IG L ++ N Sbjct: 395 IDIDGRVVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIIN 454 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L +PI+L +PI + F F + + ++ Sbjct: 455 KRIELLATCKAGNEIPIELEVVPI--KLGNEILFTAF--LRDISERKASELKLQLAKEQA 510 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLT 263 +++K + + P + V L +K+ + + Sbjct: 511 ELGNKVKSRFLATMSHEIRS-------PLNAILGGVELLLHSKLNKEQRIHANITREAGS 563 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + +++ + DF I Q L++N E + ++ +D+G L Sbjct: 564 ALLNTINDILDFSKIEAGQMV-------LESNEFEPDKLVAQVLQILEPKAYDKGLQLVS 616 Query: 324 ETVDKCPIPFFVYS 337 P Sbjct: 617 FVDRNVPQTLLGDR 630 >gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 964 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 114/536 (21%), Positives = 219/536 (40%), Gaps = 53/536 (9%) Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + + +D + G + NP+ L Y + I + Sbjct: 65 DARTKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQNVAIF 124 Query: 368 TLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + D+ + +M R D + + ++ + + Sbjct: 125 LPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQRKDGQLFPIALSVSLMKIDNK----- 179 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + G+ + D + + L + L A+ D + I+ +G Sbjct: 180 --------------VMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLITIDIDGR 225 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEK--ITL 530 ++ N A ++LFGY + + + + + + + K L Sbjct: 226 VVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIINKRIELL 285 Query: 531 GSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + K + L ++ KL ++ + DISE K + KL AK+ AE + KS F Sbjct: 286 ATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELGNKVKSRF 345 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIR+PL AI+G E++ + + N +AN +G+ +L+ +ND+LD S Sbjct: 346 LATMSHEIRSPLNAILGGVELLLHSKL----NKEQRIHANITREAGSALLNTINDILDFS 401 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 KIE+G+M L D+ V++ + +++ A +K + + + N+P+ +L D + + Q+ Sbjct: 402 KIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQV 461 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763 N++ NAI F+ SG I + N++ + RV D+G+G++ K K F Q+ Sbjct: 462 IHNLVDNAIKFSVSG-TITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQV 520 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 ++ +GTGLGL + + ++ G+ + S KG L PH+ Sbjct: 521 HDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKGCCFTFYVSL----QPHEA 572 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 6/181 (3%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 IP + ++ + + VD R + +E ++L +IL++ DG IIN +G I Sbjct: 42 IPVKGKDEIAQMGKAFNNMIDKVDART--KALEAANIRLNTILDSAVDGFVIINDKGTIT 99 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533 N A+S+LFGY +++ + +FL S + ++ + L + Q + + + Sbjct: 100 DINPAISRLFGYAHNELIGQNVAIFLPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQR 159 Query: 534 KEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K+ +L L + + K+ + + D+S+ K+++ + + + + D L Sbjct: 160 KDGQLFPIALSVSLMKIDNKVMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLIT 219 Query: 592 V 592 + Sbjct: 220 I 220 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 70/254 (27%), Gaps = 23/254 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI----DPNNHIGDLLKRQNTWY 144 ID G + E + + G + IG L ++ N Sbjct: 220 IDIDGRVVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIIN 279 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L +PI+L +PI + F F + + ++ Sbjct: 280 KRIELLATCKAGNEIPIELEVVPI--KLGNEILFTAF--LRDISERKASELKLQLAKEQA 335 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLT 263 +++K + + P + V L +K+ + + Sbjct: 336 ELGNKVKSRFLATMSHEIRS-------PLNAILGGVELLLHSKLNKEQRIHANITREAGS 388 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + +++ + DF I Q L++N E + ++ +D+G L Sbjct: 389 ALLNTINDILDFSKIEAGQMV-------LESNEFEPDKLVAQVLQILEPKAYDKGLQLVS 441 Query: 324 ETVDKCPIPFFVYS 337 P Sbjct: 442 FVDRNVPQTLLGDR 455 >gi|304412836|ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|304348799|gb|EFM13217.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] Length = 1629 Score = 369 bits (948), Expect = e-99, Method: Composition-based stats. Identities = 123/768 (16%), Positives = 261/768 (33%), Gaps = 60/768 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147 D G + ++ + G +IG CD+ ++ ++ + + Sbjct: 363 DLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKTVLNQIS 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 T G+ +V +LPIY + G + + L RL+++ Sbjct: 423 THQRQNGS--HVSTSTTSLPIYDEDSAIVGLSQ--TIRDITTQQEAERYILSLNARLEQE 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEK 258 + + + D +QQ + + + + H + +L Sbjct: 479 VTKRTNALQQALLENQTLLDTINQQLLYSATDPNGVILEVNDNFCHVSGYSRKQLLGETH 538 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYT---------------KKQYFGTLQNNSKESFEYL 303 L + E + + + I G + N + ++ Sbjct: 539 AILNSGEHDAAFWRTMWTQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNIERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + G + N L Y +V Sbjct: 599 ALRTDITERKLVQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLLGYAAV 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--------TCIAASARLHTIQWNREN 409 D I ++ L + + + + + R T + Sbjct: 659 DMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTS 718 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ + E + GI + ++ + L E GI + Sbjct: 719 QCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLGIWSWD 778 Query: 470 REGIILSTNRAVSKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 L N + + + + + + + + L + + Sbjct: 779 LRDNSLEWNERMFAIYDQPLSLQDIGLTYEHWRMRIHSDDIDFAEAKLKAAVEEKDQYDP 838 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + + I++ DI+E +Q + L AK A+ ++ Sbjct: 839 IFRVVRTDGTIRYVQAGAQIERDVTGQVTKVIGINLDITEQRQLEETLREAKHEADAANA 898 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ A++G +++++ + +Y + +L ++ND Sbjct: 899 AKSAFLANMSHEIRTPMNAVLGMLQLMQHTSMSV----QQQDYVTKTQTAAKSLLGLLND 954 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD SKI++GK+ L P S++ + + ++ K + + +P +LAD Sbjct: 955 ILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDPALPAWLLADQL 1014 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758 ++QI +N+ NA+ FT G Q+ ++ +E V + + DTG+G++ ++E+ Sbjct: 1015 RLQQILVNLAGNALKFTRHG-QVTVTMECLRHEANTVTVQISISDTGIGISEEQIERIFT 1073 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 F Q +S R GTGLGL ++K +V+ G+ + S G+ Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWF 1121 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 56/429 (13%), Positives = 120/429 (27%), Gaps = 43/429 (10%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 ++EF G RGFG + RV N A K + + EKY I + Sbjct: 93 RDVDQEFPGARGFGFIR--RVPNSDEAAFLTRAKNDDWPDFNIRQLTPHSGEKYVIEYIE 150 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P R + + AH+ + + + + + Sbjct: 151 ---PIDRNRAAIGLDVASEAHRKAAADAAMLSGEVRLSAPITLVQATGKPLQSFLILQPI 207 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + T+ + + + + +T E + + N Sbjct: 208 YRTI-------SVPKTPQERLAAGYGWSYAPLVTNEVLTGLAL-------------NQKM 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML----YRSDRTCIAASARLHTIQ 404 L + E + + + IA A + ++ Sbjct: 248 TKLL-LSDITQTERPISFFETHPDDASPLSAYSHTLTKEIFGRKWQVEVIAYPAFIQSLH 306 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 L + + + R + ++E S+LE + D Sbjct: 307 ------LNQPSLVLLSGSLLSLLLAAFIAIWSISLQRKQQVQLEQARR--ASMLEHSLDA 358 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I + G I S N+ ++FGY D++ + + + L + Sbjct: 359 IISYDLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKT-V 417 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 L +I+ + +S + S T+ DI+ ++ + + E+ Sbjct: 418 LNQISTHQRQNGSHVSTSTTSLPIYDEDSAIVGLSQTIRDITTQQEAERYILSLNARLEQ 477 Query: 581 ESSHKSDFL 589 E + +++ L Sbjct: 478 EVTKRTNAL 486 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 39/392 (9%), Positives = 94/392 (23%), Gaps = 35/392 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 D +G + E+++ G +++G ++ H + +K +W+G+ Sbjct: 509 TDPNGVILEVNDNFCHVSGYSRKQLLGETHAILNSGEHDAAFWRTMWTQIKSGLSWHGEI 568 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN----DPRALGKRLDKK 203 + + D P+++ N R + + LG L Sbjct: 569 CN--RDRHQMLKWFDTVIGPVFNENGNIE--RFVALRTDITERKLVQIEKNKLGSLLTNV 624 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E+ + + + + T H + + L + Sbjct: 625 LDAASEMSIIATDKKGVITIFNRGAEQLLGYAAVDMIGLSTPAPLHLPEEVAARSAELSS 684 Query: 264 SEESSLPEQEDF----HTINLNQYT------------KKQYFGTLQNNSKESFEYLSHRN 307 + + F T+ T + +N E YL Sbjct: 685 EYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTSQCQVSLSVTAMLDNVGEIIGYLGIAI 744 Query: 308 HPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-SVDDIE 361 S + N + + + + + N N + S+ DI Sbjct: 745 DISQVLQQQKALITASNHLSKAAEVAKLGIWSWDLRDNSLEWNERMFAIYDQPLSLQDIG 804 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + D K + + + Sbjct: 805 LTYEHWRMRIHSDDIDFAEAKLKAAVEEKDQYDPI----FRVVRTDGTIRYVQAGAQIER 860 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + + GI + + R + + + Sbjct: 861 DVTGQVTKVIGINLDITEQRQLEETLREAKHE 892 >gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 773 Score = 369 bits (948), Expect = e-99, Method: Composition-based stats. Identities = 155/743 (20%), Positives = 283/743 (38%), Gaps = 47/743 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTT 148 G + E + + +G A ++ + + + Sbjct: 52 RDGRVLEGNAAFFEALGRPADAVLDHP-----APFDVSIADAAATAGGPASPPPSRRRCA 106 Query: 149 LWPIEGT------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G + V +A L + + + +G G + A R Sbjct: 107 FLRADGVLVQATLGVGVLEGVAGLVLVTLDG-IAGADGCPLRRRAEATVPCAADRFRSLF 165 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + ++ + + P + K S + + + LL Sbjct: 166 DLAPIGMAMLDGERRWRQANSVMCRLLGVPFEGLAAKRWSDSVH-PEDRGRDERFFASLL 224 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-----NSKESFEYLSHRNHPSLSAYFDE 317 +++ + + G +++ + + A E Sbjct: 225 RNDDKASTTNLRLVAADGRVVPVTLSLGVMRDGPKGQSDQILVLVQDISERVDWEATKAE 284 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E ++ F+ G + N + L + LDAP+ + Sbjct: 285 NEARLRSLINATTDAIFLLDPDGAIRVINRAGARLLGTTARAAAGR--SFYEFLDAPQAT 342 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + A+ +A ++ I+ E L M P + + M + Sbjct: 343 ERRALF--------GEVLATLLPVNGIERWGERWLDMVVFPVV--DGDGKAMGVTLFTRD 392 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 R + + L E S + + + +GI++ N A P + + P Sbjct: 393 ITSRREAEDRARAAERHLLEATELMSAAMLLFDPQGILVLINSACRAAL--PDLEDILHP 450 Query: 497 FTVFLEQNTPSVMNHYLTEILS-------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 F+E V + ++ G K+ + L +R Sbjct: 451 GLSFIELRAAIVARRLFVQAITESQGGIKGGTPGPAPIEVRG--KDGRWLLIRQSAT--- 505 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S + DI+E K+ + L+ AK++AE + KS+FLA +SHE+RTPL AIIGFS++ Sbjct: 506 SSGYTLILGTDITELKRRERALADAKEVAEYANRAKSEFLANMSHELRTPLNAIIGFSDI 565 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++Q FG L NP Y++YA I SG +L+I++D+LD++KIE+G++ L E V V Sbjct: 566 TRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDILDLAKIEAGELGLDEEEVDAARLVD 625 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 AI +V A KRI + ++PR+ D +KQ+ +N+LSNA+ +T G + ++ Sbjct: 626 SAIQMVTPRATSKRIALTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTA 685 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + + V DTG+GM ++ AM FGQ+ + R GTGLGLPL + + +A+ Sbjct: 686 RLAGGDGLAISVIDTGIGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQ 745 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G I S P +GT + I+ P + Sbjct: 746 GCLTIASRPGEGTTVTILLPAHR 768 >gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1959 Score = 369 bits (948), Expect = 1e-99, Method: Composition-based stats. Identities = 123/793 (15%), Positives = 252/793 (31%), Gaps = 93/793 (11%) Query: 89 IDAHGYLKEISEELPKTI---------------GNYAFK-MIGMRLCDVSDILHIDPNNH 132 +DA G + ++ + G A + +G V + D Sbjct: 679 LDADGNIVAVNAAWERFAHDNTDPGNEGSERSDGRPAPRTGVGDNYLRVCEAATGDEAAQ 738 Query: 133 IGDLLKR--QNTWYGKTTLWPIEGT----NLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + + G+ + ++ T LA P+ +R+ SG + Sbjct: 739 -ARAIHDGIRAVLRGEAQAYAVDYTCHTPTRKRWFHLAVTPLRTRS---SGA--VMVHTD 792 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---------LRMK 237 + L ++ + + + + + + + + Sbjct: 793 ITDRKREQELLRKSEARHRSMVNSLSEGIIIFDARGHVQACNPAAERMMGLTQAQMRGPR 852 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT---INLNQYTKKQYFGTLQN 294 ++ + K PLL + + P + + ++ Sbjct: 853 ETGLAMWRPVQPNGRPMPRSKLPLLRTLTTGQPCHDVVLGGVTPDGKTRWLLANAEPVRE 912 Query: 295 N-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352 S E ++ S ++ V++ P + GN+ Y N ++ L++ Sbjct: 913 PVSGELTGVVTSFTDISERFVAEQQLRKLSLAVEQSPTGIVITDVQGNIEYVNQAYTLVS 972 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y + + L L+ + + + + Sbjct: 973 GYSRDELMGHNPS----LAQSGLTPRQHYTDMWSTLAKGQSWQGE---FINRRKSGETYD 1025 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI-------------------------NKRKM 447 + + I + + + + + Sbjct: 1026 VFATVVPMRDGEGAVTHYLAISEDITERKRLSAELDQHRHHLEELVAERTQALQVAHQAL 1085 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 L S+ + D + + + N+A K E + + L + Sbjct: 1086 ADSEKFLRSLADNLPDRLTYWDTDLRCRFANKAFLKFHDLSEEQAIGRSSRHLL--MDQA 1143 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564 + ++ + + + + + R+ + + DI+ Sbjct: 1144 SASEWIVRMSAAMSGAPQHFERARLGADGRSRTERVHQIPDLKDGVVQGAFVLVSDITGI 1203 Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 KQ + +L+ A+ AE + KS FLA +SHEIRTP+ AIIG + ++ Sbjct: 1204 KQAEQRLTQLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLRDSTDT 1263 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + R + + + +LD++ND+LD+SKIESGK+ L +D +S A +LV Sbjct: 1264 VQQER----LGQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVDTLLSRACALVGE 1319 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 A K + + + D + Q +N+LSNA+ FT G ++ I Sbjct: 1320 RARAKGLELVLDSHRLPTSLRGDPTRLSQALVNLLSNAVKFTEQGSVVVRAEIVHEDPDG 1379 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V V DTG+GM ++ + F Q +S R GTGLGL + + + + G+ + Sbjct: 1380 LTVRFEVDDTGIGMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHLAELMGGEVGV 1439 Query: 795 FSTPAKGTLIEII 807 S P G+ Sbjct: 1440 SSAPGVGSRFWFT 1452 Score = 180 bits (457), Expect = 8e-43, Method: Composition-based stats. Identities = 56/543 (10%), Positives = 148/543 (27%), Gaps = 47/543 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNT-WYG 145 G +++ L + G +++ MR V+ ++P I L + + Sbjct: 551 ETGLDGRWLHVNDRLCEITGYSRDELLQMRFQQVTLPEELEPMQVLIERTLAGEQNGFSI 610 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G + + + + + F ++ + A + Sbjct: 611 EKRDRHRDG--WLIWVHVWTQLVRDEHGAPQYF--VSVIEDISLRKQTEAALAESVELVQ 666 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---- 261 + + H +V +I + + N Sbjct: 667 AVEDSVLDHMAVLDADGNIVAVNAAWERFAHDNTDPGNEGSERSDGRPAPRTGVGDNYLR 726 Query: 262 ---LTSEESSLPEQEDFHTINL-------------------NQYTKKQYFGTLQ-NNSKE 298 + + + + I + L+ +S Sbjct: 727 VCEAATGDEAAQARAIHDGIRAVLRGEAQAYAVDYTCHTPTRKRWFHLAVTPLRTRSSGA 786 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357 + + + E V+ ++ G++ NP+ + Sbjct: 787 VMVHTDITDRKREQELLRKSEARHRSMVNSLSEGIIIFDARGHVQACNPAAERMMGLTQA 846 Query: 358 DD--IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 G P K +L L + + + + Sbjct: 847 QMRGPRETGLAMWRPVQPNGRPMPRSKLPLLRTLTTGQPCHDVVLGGVTPDGKTRWLLAN 906 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + E + + + ++++ +L +E + GI I + +G I Sbjct: 907 AEPVREPVSGELTGVVTSFTDISERFVAEQQLR----KLSLAVEQSPTGIVITDVQGNIE 962 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+A + + GY ++++ ++ TP + L+ Q+ + + K Sbjct: 963 YVNQAYTLVSGYSRDELMGHNPSLAQSGLTPRQHYTDMWSTLAKG--QSWQGEFINRRKS 1020 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + + + Y DI+E K+ +L + E+ + ++ L + Sbjct: 1021 GETYDVFATVVPMRDGEGAVTHYLAISEDITERKRLSAELDQHRHHLEELVAERTQAL-Q 1079 Query: 592 VSH 594 V+H Sbjct: 1080 VAH 1082 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 57/526 (10%), Positives = 135/526 (25%), Gaps = 49/526 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144 + D G + E + G A ++G + +++ Sbjct: 424 IFAKDLQGRYLLFNREASRLTGMSADAVLGNDDHLLFPPEQAAKVMANDAQVMRDGQVGT 483 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L EG Y+ P+ + G FGI R + ++ Sbjct: 484 FEEELDTPEGRATYM---ATKGPLRDTQGQVVGM--FGISRDVTEKRRAEQALARSEARY 538 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK---Y 259 E S ++++ + + L+ + Sbjct: 539 RAAFEQAAVGMSETGLDGRWLHVNDRLCEITGYSRDELLQMRFQQVTLPEELEPMQVLIE 598 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L E++ ++ + + +++ ++S SL + Sbjct: 599 RTLAGEQNGFSIEKRDRHRDGWLIWVHVWTQLVRDEHGAPQYFVSVIEDISLRKQTEAAL 658 Query: 320 NLTPETVDKCPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL----- 369 + E V + + GN+ N ++ + E + Sbjct: 659 AESVELVQAVEDSVLDHMAVLDADGNIVAVNAAWERFAHDNTDPGNEGSERSDGRPAPRT 718 Query: 370 -----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-------RENSLAMTFIP 417 + D + R+ + P Sbjct: 719 GVGDNYLRVCEAATGDEAAQARAIHDGIRAVLRGEAQAYAVDYTCHTPTRKRWFHLAVTP 778 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + D + + + + S++ + S+GI I + G + + Sbjct: 779 LRTRSSGAVMVH-----TDITDRKREQELLRKSEARHRSMVNSLSEGIIIFDARGHVQAC 833 Query: 478 NRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-G 531 N A ++ G + ++ N + L + +L Q + L G Sbjct: 834 NPAAERMMGLTQAQMRGPRETGLAMWRPVQPNGRPMPRSKLPLLRTLTTGQPCHDVVLGG 893 Query: 532 STKEEKLLSLRIIIKKLPFS-----SCYSLTMHDISEWKQEKNKLS 572 T + K L + + + + DISE + +L Sbjct: 894 VTPDGKTRWLLANAEPVREPVSGELTGVVTSFTDISERFVAEQQLR 939 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 47/398 (11%), Positives = 109/398 (27%), Gaps = 27/398 (6%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L S + +G + + P M + + D + + Sbjct: 304 LATSDSLAARVVRGELPYGRAVEAPDFRDKPVFGAVMP--IKGTDWLLVARIDRAELIEL 361 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + Y ++ +S E+ Sbjct: 362 AMKDAMWIGAAGLLALFMGGVAAYWLRERQSLQFELRAQSQEH-----------ERLRAL 410 Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 L D F G N LT + + LL P+ + Sbjct: 411 ALLSAIADSSTDAIFAKDLQGRYLLFNREASRLTGMSADAVLGND---DHLLFPPEQAAK 467 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R D L + T P + + + GI + Sbjct: 468 VMANDAQVMR-DGQVGTFEEEL--DTPEGRATYMATKGPL--RDTQGQVVGMFGISRDVT 522 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + R ++ + + + E + G++ +G L N + ++ GY +++L+ F Sbjct: 523 EKRRAEQALARSEARYRAAFEQAAVGMSETGLDGRWLHVNDRLCEITGYSRDELLQMRFQ 582 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 M + L+ + ++ L+ + + + + + Sbjct: 583 QVTLPEELEPMQVLIERTLA-GEQNGFSIEKRDRHRDGWLIWVHVWTQLVRDEHGAPQYF 641 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + DIS KQ + L+ + ++ + D +A + Sbjct: 642 VSVIEDISLRKQTEAALAESVELVQAVEDSVLDHMAVL 679 Score = 114 bits (285), Expect = 8e-23, Method: Composition-based stats. Identities = 36/431 (8%), Positives = 112/431 (25%), Gaps = 36/431 (8%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLT 244 R + + L + + + + + + M + V Sbjct: 396 ELRAQSQEHERLRALALLSAIADSSTDAIFAKDLQGRYLLFNREASRLTGMSADAVLGND 455 Query: 245 EYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 ++ + + + E+ + T G L++ + Sbjct: 456 DHLLFPPEQAAKVMANDAQVMRDGQVGTFEEELDTPEGRATYMATKGPLRDTQGQVVGMF 515 Query: 304 SHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVD 358 E ++ + G + N +T Y + Sbjct: 516 GISRDVTEKRRAEQALARSEARYRAAFEQAAVGMSETGLDGRWLHVNDRLCEITGYSRDE 575 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 ++ L + V++ R+ + + + + Sbjct: 576 LLQ------MRFQQVTLPEELEPMQVLIERTLAGEQNGFSIEKRDRHRDGWLIWVHVWTQ 629 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ + + + + + V + ++ ++ D +A+++ +G I++ N Sbjct: 630 LVRDEHGAPQYFVSVIEDISLRKQTEAALAESVELVQAVEDSVLDHMAVLDADGNIVAVN 689 Query: 479 RAVSKL----------------------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 A + G + E ++ + + Sbjct: 690 AAWERFAHDNTDPGNEGSERSDGRPAPRTGVGDNYLRVCEAATGDEAAQARAIHDGIRAV 749 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 L + + T + ++ L + + SS + DI++ K+E+ L ++ Sbjct: 750 LRGEAQAYAVDYTCHTPTRKRWFHLAVTPLRTR-SSGAVMVHTDITDRKREQELLRKSEA 808 Query: 577 IAEKESSHKSD 587 + S+ Sbjct: 809 RHRSMVNSLSE 819 >gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1162 Score = 369 bits (948), Expect = 1e-99, Method: Composition-based stats. Identities = 117/638 (18%), Positives = 243/638 (38%), Gaps = 31/638 (4%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYY 247 + + +++F H E ++ + S + ++S+LT Sbjct: 300 VAERTKALRASEEQFRHSFEDASIGMAIVSLDGHWINVNSALCQIIGYSPEELSALTFQD 359 Query: 248 AHKDDVLKTE---KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D L+ E LL S+ ++ + + +Q+ +++ Sbjct: 360 ITYPDDLEVELSYAQQLLAGTISTYQLEKRYFHKQGHIVWILLNGSLVQDEQGNPLHFIA 419 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEI 362 + + L ++ + + + Y N + + Y + Sbjct: 420 QIQDITARKAAQKTLELQSIIMNNMAGGVCLVKAADLTIVYTNRKYDAMFGYLEGELAGQ 479 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G+ +D D + + D A +H + + Sbjct: 480 PVGILNYVDTQVTPDVSVLDIATQLDRDGE---AKYEVHNRKKDG---TLFWCRVHTSRF 533 Query: 423 QFPE-NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNR 479 + PE ++ + + ++ ++ ++ +L +L + I +G + Sbjct: 534 EHPEYGTVYVAVQQDVTELQLAEKALQATTNRLNFLLNYSPVVIFSCKPDGDYGATFISE 593 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + + GY + L ++ P ++ + +L + + Sbjct: 594 NIKDVLGYETREFLEDS-KFWVNHLHPDDVDQVFHGLANLYVNNYYFHEYRLRRSDGVYR 652 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + ++ + + + DIS+ KQ + +L AK+ AE + KS FLA +SHE Sbjct: 653 WILNQLRLIRDCAGKPVEIVGYLIDISDRKQAELELRQAKEAAEAANQAKSVFLANMSHE 712 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL +I+GF++++ + E I+RSG +LD++ND+LD+SKIESG+M Sbjct: 713 LRTPLNSILGFTQLMSYENNLTSS---LQERLQIINRSGRHLLDLINDILDLSKIESGRM 769 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 L+ L ++ ++Q+ K + + + +P + D + + Q+ +N+LSN Sbjct: 770 TLNPSDFDLINLLTSIEEMLQVKVQSKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSN 829 Query: 715 AIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 A+ FT G I + E + V DTGVG+ E++K K F Q + Sbjct: 830 ALKFTQQGS-ITLRVRAEQKEKHSCRLCFEVEDTGVGIAPTEIDKLFKVFVQA-QAGNNL 887 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +GTGLGL +++ +V G+ + ST +G+ Sbjct: 888 SQGTGLGLAISQKLVQLMGGQIQVQSTLNRGSTFSFEI 925 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 30/379 (7%), Positives = 89/379 (23%), Gaps = 28/379 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146 + G+ ++ L + IG ++ + D++ ++ L +T+ + Sbjct: 328 VSLDGHWINVNSALCQIIGYSPEELSALTFQDITYPDDLEVELSYAQQLLAGTISTYQLE 387 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +G V I L + F + L + Sbjct: 388 KRYFHKQGHI--VWILLNGSLVQDEQGNPLHF--IAQIQDITARKAA-QKTLELQSIIMN 442 Query: 207 -------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L + KYD + + + D + Sbjct: 443 NMAGGVCLVKAADLTIVYTNRKYDAMFGYLEGELAGQPVGILNYVDTQVTPDVSVLDIAT 502 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFD 316 L E+ + + + + ++ Sbjct: 503 QLDRDGEAKYEVHN--RKKDGTLFWCRVHTSRFEHPEYGTVYVAVQQDVTELQLAEKALQ 560 Query: 317 EGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 N ++ P+ F + + + + Y++ + +E S Sbjct: 561 ATTNRLNFLLNYSPVVIFSCKPDGDYGATFISENIKDVLGYETREFLED----SKFWVNH 616 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D+ V ++ + ++ + + + + + G Sbjct: 617 LHPDDV--DQVFHGLANLYVNNYYFHEYRLRRSDGVYRWILNQLRLIRDCAGKPVEIVGY 674 Query: 434 EPEDVDTRINKRKMEIEVM 452 + D + + ++ Sbjct: 675 LIDISDRKQAELELRQAKE 693 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 5/161 (3%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + Q E + E ++ + + Q E S G+AI++ +G Sbjct: 275 LNQIDSKRQQAEAELKKLNETLEILVAERTKALRASEEQFRHSFEDASIGMAIVSLDGHW 334 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 ++ N A+ ++ GY E++ F + V Y ++L+ T + K Sbjct: 335 INVNSALCQIIGYSPEELSALTFQDITYPDDLEVELSYAQQLLA-GTISTYQLEKRYFHK 393 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 + ++ + + + + + DI+ K + L Sbjct: 394 QGHIVWILLNGSLVQDEQGNPLHFIAQIQDITARKAAQKTL 434 >gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 973 Score = 369 bits (947), Expect = 1e-99, Method: Composition-based stats. Identities = 120/663 (18%), Positives = 231/663 (34%), Gaps = 31/663 (4%) Query: 166 LPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 LP+ R F G F G + + L ++ + G Sbjct: 162 LPLARRLNNFDGSFAGVVVAELEPDYFAQFYATFGLGERGTIGLWSSNGRLLSRDPAAPT 221 Query: 225 FS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 S S P ++ + + + D +K + +L T + Sbjct: 222 ESQDKDFSSTPLFHNLRRISTGVYDAPPAPIDGVKRIVAYERLVKYPALVVTAGIATDDA 281 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSH--------RNHPSLSAYFDEGENLTPETVDKCPIP 332 +++ S + R + A +L T++ Sbjct: 282 LAAWRREALVQASAISTAVLALVGLGVGLGRRDRRVRAAEAEARASADLLAVTLENMDQG 341 Query: 333 -FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + + + N L L + ++ Sbjct: 342 LMMIDADDRVQVCNRRALELLDLPPAFMARKPTFTAVRNHQLAHNEFAHSDEAFRTWVAT 401 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + + + L + +P + +R Sbjct: 402 AGLEPREHTYERERPNGTVLEIRTVPLAGG-------GAVRTYTDITARHGAERARRESE 454 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + + + SD I + + +G + +V + GY VE+ R L + + ++ Sbjct: 455 ARYKVLADNVSDLIVLGHADGRRSYISPSVHAMLGYAVEEAHRIRVRDCLHPDDLNRVSA 514 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569 + ++ + K + + K++ + ++ + D+++ +++ Sbjct: 515 AAASLSRERPTASV--VFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAIRDVTQRVRQER 572 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A+ AE + K++FLA +SHE+RTPLT ++G +++ + Sbjct: 573 HLERARVEAEAGARAKAEFLANMSHELRTPLTGMLGVHDLLAGD---ASLSDAQRHLVGL 629 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 +G +L IVND+LD SKIE+G+M + P SL V +LV A +K + + T Sbjct: 630 AQEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESAKDKPLRLVTD 689 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747 + P + D ++QI LN+ SNA+ FTP G +I + ++ V + V DTG+G Sbjct: 690 IEGDAPDRFVGDPTRLRQILLNLASNAVKFTPRG-EITMRVGFAASTGRVRVAVTDTGIG 748 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + F Q S R GTGLGL + K +V+ G + S P +G+ Sbjct: 749 IPADKLPLLFERFSQADASTTRRYGGTGLGLVICKRLVELMGGTIGVESVPGRGSTFWFE 808 Query: 808 FPL 810 PL Sbjct: 809 LPL 811 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 14/238 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G IS + +G + +R+ D ++ + L R+ Sbjct: 473 ADGRRSYISPSVHAMLGYAVEEAHRIRVRDCLHPDDLNRVSAAAASLSRERPTASVVFRL 532 Query: 151 -PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 G YV ++ A I + IV R + L++ E Sbjct: 533 KHKAGH--YVWVEAAYKRIEDADE-------VTIVTAIRDVTQRVRQERHLER---ARVE 580 Query: 210 IKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + G + + ++ + ++P + + + + + L S + Sbjct: 581 AEAGARAKAEFLANMSHELRTPLTGMLGVHDLLAGDASLSDAQRHLVGLAQEAGRSLLAI 640 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + DF I Q + +L+ + ++ + E P+ Sbjct: 641 VNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESAKDKPLRLVTDIEGDAPDRF 698 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 18/240 (7%), Positives = 54/240 (22%), Gaps = 7/240 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 IDA ++ + + + + + + H +N + TW Sbjct: 345 IDADDRVQVCNRRALELLDLPPA-FMARKPTFTAVRNHQLAHNEFAHSDEAFRTWVATAG 403 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L P E T + L I + +G + + + ++ L Sbjct: 404 LEPREHTYERERPNGTVLEIRTVP--LAGGGAVRTYTDITARHGAERARRESEARYKVLA 461 Query: 209 EIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + + + D + L+ Sbjct: 462 DNVSDLIVLGHADGRRSYISPSVHAMLGYAVEEAHRIRVRDCLHPDDLNRVSAAAASLSR 521 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E + + + + +++ + + + Sbjct: 522 ERPTASVVFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAIRDVTQRVRQERHLERARVEA 581 >gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803] Length = 571 Score = 369 bits (947), Expect = 1e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPSRLKQIFINLINNAIVYTPA 478 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1969 Score = 369 bits (947), Expect = 1e-99, Method: Composition-based stats. Identities = 125/581 (21%), Positives = 218/581 (37%), Gaps = 53/581 (9%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + H + Q L ++R + + E D Sbjct: 884 HVNREHHWEHDEIIFGCQVADQLGMVLLTQERLQANREAEASRQELLQSEERLRCITDSA 943 Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLY 387 + G + Y NP+ + Y + + + L LL PK ++ P L Sbjct: 944 SDAILMMDPQGAISYWNPAATQIFGYAAEEALGRN--LHELLAPPKHIKSHLSAFPEFLR 1001 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + L I + + A Q + I + + + ++ ++ Sbjct: 1002 SGTGAAVNKTVELSAICKDGRE---IPIALSLSAVQLNASWHAVAIVRDISEAKQHEAEL 1058 Query: 448 EIEVMQ--------------------------------LCSILEATSDGIAIINREGIIL 475 + L +I +A S GIA I ++ I+ Sbjct: 1059 LEAKQRAEQSEQAKTQVLEQLEDMVANRTRELKQSNLKLQAIFDAASSGIAQI-KDRTII 1117 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 NR + ++FGY ++L V+ ++ + + L + L K+ Sbjct: 1118 RCNRRMEEIFGYGPGEMLNLSTRVWYASDSQYLKVGEQVKEAMARLGEYSSGDILLRRKD 1177 Query: 536 EKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 R KKL + + D++ ++ L AK+ AE+ + KS FLA + Sbjct: 1178 GSRFWARSKAKKLQLEGAENTFVSMFDDVTAEREAAEALRLAKESAEEANQAKSSFLANM 1237 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ AIIG + ++K P+ + + + +L I+ND+LD SKIE+ Sbjct: 1238 SHEIRTPMNAIIGLAHLLKRD-----ATPQQVGQLEKVSDAAQHLLRIINDILDFSKIEA 1292 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 GKM L L+ + SL+ A +K + T+ A+ + D + QI LN Sbjct: 1293 GKMILEPMDFELENVIDTVRSLLSEKAVDKGLEFITNIADLPQYLHGDGLRLGQILLNFA 1352 Query: 713 SNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +NA+ FT +G I + + + V DTGVGMT + + F Q S Sbjct: 1353 ANAVKFTTNGS-ISLHAEQLGEESDTIWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTT 1411 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL +++ + D G+ + S P G+ + P Sbjct: 1412 RQFGGTGLGLAISRKLTDLMGGEIGVKSEPGSGSKFWVDLP 1452 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + G+I I T + + + + DTG GM ++K P G GTGLGL Sbjct: 1 MEAQGRITICTG-SDAHTICVEISDTGCGMPQSVIDKIFDPLFTTNP----VGLGTGLGL 55 Query: 779 PL-AKAMVDANMGKFYIFSTPAKG 801 + A + + G + S G Sbjct: 56 SIYADN-MRRHSGTIAVNSVIGDG 78 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 10/160 (6%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494 + + E + L ++ T++G+ + E G + N A + GY E+ Sbjct: 606 DVANRHSTIASFEEQHQLLATMFSQTTNGVLFTDIETGEFIEFNDAAATALGYTREEFSL 665 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + + + + T K+ + + + ++++ F Sbjct: 666 LSVIDIQAEQKTAEFEEKSQRVAAGEK---INFETQHRCKDGSVRDVFMTLRRITFRGRQ 722 Query: 555 S--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + HDI+E K+ +K + +S L + Sbjct: 723 MLAASWHDITEQKKRLRD----QKKTVERLRMQSQLLGGI 758 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 20/261 (7%) Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L A T +K P + + Sbjct: 291 RLSNQLGQIATALGEFTVDNIPDNLPQIETLNSNDKNLLKPLAGAVLSFHRNLIARINAE 350 Query: 445 RKMEIE-------VMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496 ++++ E L +I E + +GI + + ++ N + ++ GY E+ Sbjct: 351 QRLQKEQFRQHSQKEFLATIAEQSPNGILLADCSTLEFITFNDSACRMLGYSREEFSNMT 410 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552 + + S + ++ E+++ + E T K+ L LRI ++ L Sbjct: 411 LYDIIANRSASELEQHIAELIATNG---GEFETDHRRKDGSLCHLRISVRILKIDGKTCI 467 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT-PL-TAIIGFSEV 609 + + +++E K + H K KE + D A E T PL + E Sbjct: 468 SGIWIDLSELTEAKMKLAAEHHQLKERIKEQACLYDIFALT--EDNTQPLENVLQNVVER 525 Query: 610 IKNQRFGPLGNPRYIEYANYI 630 + P I++A+ I Sbjct: 526 LPAGWQYPQITEARIKFADQI 546 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 25/283 (8%), Positives = 74/283 (26%), Gaps = 18/283 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQ-NTWYG 145 +D G + + + G A + +G L ++ + + + L+ Sbjct: 950 MDPQGAISYWNPAATQIFGYAAEEALGRNLHELLAPPKHIKSHLSAFPEFLRSGTGAAVN 1009 Query: 146 KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 KT +G + + + L+A+ + + + IV A + Sbjct: 1010 KTVELSAICKDGREIPIALSLSAVQLNAS------WHAVAIVRDISEAKQHEAELLEAKQ 1063 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + K ++ +++ +L+++ + + A D + Sbjct: 1064 RAEQSEQAKTQVLEQLEDMVANRTRELKQSNLKLQAIFDAASSGIAQIKDRTIIRCNRRM 1123 Query: 263 TSEESSLPEQ------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 P + ++ + + E S ++ Sbjct: 1124 EEIFGYGPGEMLNLSTRVWYASDSQYLKVGEQVKEAMARLGEYSSGDILLRRKDGSRFWA 1183 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + ++ L L K + + Sbjct: 1184 RSKAKKLQLEGAENTFVSMFDDVTAEREAAEALRLAKESAEEA 1226 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 40/376 (10%), Positives = 96/376 (25%), Gaps = 29/376 (7%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153 ++ + +G + M L D+ HI +L+ +T + Sbjct: 388 FITFNDSACRMLGYSREEFSNMTLYDIIANRSASELEQHIAELIATNGG-EFETDHRRKD 446 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G+ ++ I + L I SG + + A K+ Sbjct: 447 GSLCHLRISVRILKI-DGKTCISGI--WIDLSELTEAKMKLAAEHHQLKERIKEQACLYD 503 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEKYPLLTSEESS-- 268 ++ ++ R+ A D + T + ++S+ Sbjct: 504 IFALTEDNTQPLENVLQNVVERLPAGWQYPQITEARIKFADQIFTTAAFEETPWQQSANA 563 Query: 269 --LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENL 321 L + TI + ++ G + + + N S A F+E L Sbjct: 564 VTLTDVPVVITIVYREEQPQEQEGVFLAEERSLLDAILKRICDVANRHSTIASFEEQHQL 623 Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + G N + Y + L +++D Sbjct: 624 LATMFSQTTNGVLFTDIETGEFIEFNDAAATALGYTREE-----FSLLSVIDIQAEQKTA 678 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + I + + + + + + + + + + Sbjct: 679 EFEEKSQRVAAGEKINFETQH---RCKDGSVRDVFMTLRRITFRGRQMLAASW--HDITE 733 Query: 440 TRINKRKMEIEVMQLC 455 + R + V +L Sbjct: 734 QKKRLRDQKKTVERLR 749 >gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1210 Score = 369 bits (947), Expect = 1e-99, Method: Composition-based stats. Identities = 132/801 (16%), Positives = 251/801 (31%), Gaps = 97/801 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLL----KRQNT 142 +D H + ++ E + G +++G RL D+ + + +L + + Sbjct: 94 VDGHWNIVLLNPEGERLWGLTEKEVVGRRLHDMISLSYGTKLTEPIFTQILLDDTAQGGS 153 Query: 143 WY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + L I G + V LA PI NR + + + + Sbjct: 154 FRTDDGLLTSITGRSFPVSCVLA--PIVQENRS---AGAVLVFRDIMERKQTEDIRRHTE 208 Query: 202 KKF----------------------SHLHEIKKGHSSVEKE------------------- 220 L EI + + Sbjct: 209 SLLRRQQTTLLELTRNSIIQSGVLEPALQEITRATAITLGVSRTSIWLLSEDHDSIRCKD 268 Query: 221 -----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 DI S P + ++ + L ++ Sbjct: 269 LYESSKHSHSSGIDIQSAHFPEYFRALLSERVIDAADAKSDPRTREFTASYLEPLGIGAM 328 Query: 270 PEQEDF-----------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + I + + + L + Sbjct: 329 LDIPIRFKGKLVGVLCNEHIGPPRPWMLEEQQFGHAIASLVSLALEAVERLHAEGALRKS 388 Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E T +D + G + N + + + + A TL+ Sbjct: 389 EGRTRLIIDTALSAVIGMDERGLIIGWNTQAEQIFGWTRQEALGRA-MTDTLIPPAHRET 447 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L D + + ++ + + + Sbjct: 448 HQRGLERFLKTGDGPILNKRIEVTALRRDGTEF---PVELAITPLRIENAYTFTAFVVDI 504 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-- 495 + + + + +L ++ + GI N + + GY + Sbjct: 505 SERKEAEEALRTSEARLTMTVQGSHIGIWDWNLTTGAIYFSSQWKNQLGYDDTTLPNSFD 564 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551 + + + + + L R E ++ + + + Sbjct: 565 EWRTRIHPDDQPFVQETIQACL-DGQRSQFELEHRLRHRDGSYRWILSRGSLIRDLYGVT 623 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + D ++ K+ + +L AK+ AE S KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 624 ARMVGIHIDTTDRKRTEEELRSAKEAAEAASKAKSEFLANMSHEIRTPMNGVLGTTELLL 683 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N + A+ + RSG +L I+ND+LD SKIE+GK++L L + E+ Sbjct: 684 NSAL----TDKQRHLASTVHRSGRTLLAIINDILDFSKIEAGKLDLECVDFDLLPVLEES 739 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + L A K++ + A+ +PR + D +QI +N+LSNA+ FT +GG + +S Sbjct: 740 LELFGEAARRKQLRLSQHIADAVPRYLKGDPVRFRQILMNLLSNAMKFTETGG-VSLSAE 798 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + V DTG+G+ + F Q S R GTGLGL +AK +V Sbjct: 799 YVEGTTTQALLRFAVTDTGIGIPPAAKSRIFDAFSQADGSTTRRYGGTGLGLSIAKQLVG 858 Query: 787 ANMGKFYIFSTPAKGTLIEII 807 G + STP G+ Sbjct: 859 LMGGTITVESTPGSGSTFAFT 879 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 62/161 (38%), Gaps = 11/161 (6%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R ++ ++ E +L ++L + DG+ +++ I+ N +L+G ++++ + Sbjct: 66 RRTSESQLAGERDKLQTVLRSIGDGLCVVDGHWNIVLLNPEGERLWGLTEKEVVGRRLHD 125 Query: 500 FLEQNTPSVMNH------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + + + + L + +T + + T + + ++ + + Sbjct: 126 MISLSYGTKLTEPIFTQILLDDTAQGGSFRTDDGLLTSIT--GRSFPVSCVLAPIVQENR 183 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 L DI E KQ ++ H + + ++ + + Sbjct: 184 SAGAVLVFRDIMERKQTEDIRRHTESLLRRQQTTLLELTRN 224 >gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145] Length = 1304 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 142/737 (19%), Positives = 268/737 (36%), Gaps = 40/737 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ LKEI+ + +G +G L D+ P + L+ TT Sbjct: 189 LDSQFLLKEINPAFSEGLGISRSAALGKSLLDILQDKDHTPEGLLKKLIGTTQGIQLVTT 248 Query: 149 LWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 G T + +A N E F + + + + +++F Sbjct: 249 TQKENGKKTTIDWHFKYDSA------NGEI-----FAFGRNTTKELEEKLKLENSERRFR 297 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + E G S+ +I + + +V L + + L Sbjct: 298 NFFENAIGLMSMHDMDGNIIAVNEKGRDILHYTAEEVKKLNLRQLVPPHHIPLLESYLER 357 Query: 264 SEESSLPEQEDFHTI--NLNQYTKKQYF--GTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + Y L+ L+ + L + Sbjct: 358 IARNKEDSDMMVLQTKDGTPIYWLYHNMLETDLEGKPYVVSTALNMTDRIQLEHDLLHTK 417 Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + +T + + N Y + ++ K D + + S Sbjct: 418 QILEQTNAVAQVGGWEVDLEKNKVYWSDPTKIIHGVK-KDFVPDLDSAIGFFEPE--SKK 474 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + T RL + S+ + + + + GI + Sbjct: 475 KVREIFEQAVVKGTSYDIELRL---RKQDGESIWVRVKGVPEF-EEGKCKRVFGIIQDIN 530 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 ++ ++E + L + + +A+ +R+ + + + F D+L + F Sbjct: 531 QSKTLYLELERKEAMLQAFVNYVPASVAMFDRDFNYVFVSNQWIEDFHQGKADLLNRNFF 590 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-- 556 Y + + T E I++G E + + + L + Sbjct: 591 ELFPHIPQERKKIYKEALEGKPYKNTNEIISVGGISEPQHFNWEVRPWHLRDGGIGGIII 650 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +ISE + +L AK A+ S KS+FLA +SHEIRTPL +IGFS+++ Sbjct: 651 FTQNISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL- 709 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 N +Y NYI+ SGN +L I+ND+LD SKIE+GK+ L + ++ + ++ I++V Sbjct: 710 ---NETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVL 766 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----TH 731 A K + + + +P I D +KQ+ +N+L NA+ FT G +I + ++ Sbjct: 767 YQAQRKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFTEHG-EIELKIEKLSSY 825 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + VRDTG+G+ + ++ + F Q +S R GTGLGL ++ +++ K Sbjct: 826 NDKITLRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSK 885 Query: 792 FYIFSTPAKGTLIEIIF 808 + S P KG++ Sbjct: 886 LQLKSEPGKGSIFYFDL 902 Score = 39.6 bits (91), Expect = 2.1, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 3/113 (2%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E I+ + + I +++ + ++ N A S+ G L K L+ Sbjct: 171 EAEYFSEIVRLSKNMICVLDSQFLLKEINPAFSEGLGISRSAALGKSLLDILQDKDH-TP 229 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 L +++ Q ++ +T + K ++ K + + + Sbjct: 230 EGLLKKLI--GTTQGIQLVTTTQKENGKKTTIDWHFKYDSANGEIFAFGRNTT 280 >gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 780 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 108/535 (20%), Positives = 192/535 (35%), Gaps = 30/535 (5%) Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 + + T D + S G++ N + Sbjct: 108 LAQPVEPIELVATVNALLRTRKAEEAARLLAREWQTTFDAIADLVCLLDSDGSIVRCNCA 167 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + G L + + R R Sbjct: 168 ARELWGKSESEI---KGCFYQDLIQDTIGATEVNLFIR-ARETGRRQNLELRF------G 217 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIA 466 + ++T P I + D + + + +L+ D I Sbjct: 218 DRWFSVTADPILGDR--GNFAGAVWIVADITDRKQAESAQRETEERFRLLLDNAQDYAIF 275 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++ +G I+ + ++ GY + + +P ++ + L + E Sbjct: 276 FLDAQGYIIRWSVGAQRILGYEEAEAIGQPTSIIFTPEDLAAGTDKLE-LEQAVAAGQAE 334 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKL-------SHAKK 576 K+ I+ L ++ M D +E KQ +++ +A+ Sbjct: 335 DERWHIRKDGSRFWASGILTSLQDEAGLRGFAKIMRDFTERKQAEDERAQLLIREQNART 394 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE + K +FLA +SHE+R+PL A++G+ ++ ++F + I+RS Sbjct: 395 QAETANRMKDEFLATLSHELRSPLNAMLGWLRLLNTRKFDEKTTAKA---METIERSARA 451 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +V DLLD+S+I GK+ L+ PV L + A+ V+ A K I ++T F + Sbjct: 452 QAQLVEDLLDVSRIIQGKVRLNVRPVELVTVIEAALDTVRPAAEAKEIRLQTIFDSTGGL 511 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D ++QI N+LSNA+ FT GGQ+ + N V + VRDTG+G+ L Sbjct: 512 VAGDSDRLQQIVWNLLSNAVKFTLKGGQVQVYLERV-NSHVEISVRDTGLGIKPDFLPFV 570 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 F Q +S G G+GL + + +V+ + G S KG I PL Sbjct: 571 FDRFRQADSSIARTYTGLGIGLAIVRHLVELHGGSVRAQSEGEGKGATFTIKLPL 625 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 74/286 (25%), Gaps = 10/286 (3%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 D + + ++E F + +DA GY+ S + +G + I Sbjct: 243 ADITDRKQAESAQRETEERFRLLLDNAQDYAIFFLDAQGYIIRWSVGAQRILGYEEAEAI 302 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G + + +L + + W I + Sbjct: 303 GQPTSIIFTPEDLAAGTDKLELEQAVAAGQAEDERWHIRKDGSRFWASGILTSLQDEA-- 360 Query: 175 FSGFRGFG-IVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 G RGF I+ + L ++ + + + + ++ + + P Sbjct: 361 --GLRGFAKIMRDFTERKQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPL 418 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE----DFHTINLNQYTKKQY 288 + + T + K E ++ L E + + Sbjct: 419 NAMLGWLRLLNTRKFDEKTTAKAMETIERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVE 478 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 T+ + ++ + L FD L D+ + Sbjct: 479 LVTVIEAALDTVRPAAEAKEIRLQTIFDSTGGLVAGDSDRLQQIVW 524 >gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea phototrophica DFL-43] Length = 1337 Score = 368 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 138/817 (16%), Positives = 269/817 (32%), Gaps = 70/817 (8%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNI--------DAH 92 + P H + + Q ++E+ VR ++ DA+ Sbjct: 203 AQEPAHVTAAAEPLQARPQP-PVGVEQSNNESDL-----LAPVRDIFDAMDVGIVIYDAN 256 Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKTTLW 150 L ++ + +G L D+ + + + W Sbjct: 257 DVLIYVNPAMDALTAPDYRLEVGTALPDLLQKTCHIKESEDPVARA-----AWIENRLSV 311 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---KKFSHL 207 + + V + NR+ G+ AL + + F + Sbjct: 312 HRQFGSATVERLTNGRWLRLTNRQLDNGCTLGLRIDVTELKQREALLETHAAQNELFRAI 371 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + S V+ E L + ++ D Sbjct: 372 LDEMPVSSFVKDEDLRYVYVNRAHRKLTGLTPEDMLGKDDFRIFGDQGQALRDVDTSVMS 431 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG------- 318 + L E E + + + L S +E Sbjct: 432 GNGLVECEIELNATDGRPLQLIDRKVPFTDPSGQRFLLGTTIDVSERKRREEEVFEARRL 491 Query: 319 ----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + ++ + V ++ N +F + D+ A + Sbjct: 492 AEIHRDDLESILETMHMGVIVLDKNLDVKLINSAFYRIWNVDQDRDLTNASFKEVIELNR 551 Query: 374 K---LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + A +L + + + Sbjct: 552 YNNIYDVPDNDFDKYIETRLSEISGGFAAPREFSRADGKTLIYSVRSLSEGKRMVTYFDV 611 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 ++ + + + + + E L A + G+ ++ I +N+A ++ P E Sbjct: 612 TELKQREHERDLARAEGERANEILRDAASAMAQGLLVV-ENNRIQFSNKAFCEILDLPQE 670 Query: 491 -----DILRKPFTVFLE------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 ++ + S + + +E+ + + + L Sbjct: 671 LVKPGELADRYLDYCEARGDFGEGEKASESREKIRRTIENGKPYAVER----KSAKNRWL 726 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + S+ T DI+ KQ + +L AE KS+FLA +SHEIRTP Sbjct: 727 KVDAKVG---SSNAIIATFSDITATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTP 783 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + ++G +E++ R +A+ I +SG +L I+ND+LD SKI++G++ L Sbjct: 784 MNGVLGMAELLSRTELDT----RQRTFADIIVKSGTALLTIINDILDFSKIDAGQLTLES 839 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 +P L EA+ + +L+ A EK I + +P ++ D+ ++Q+ N++ NAI F Sbjct: 840 QPFDLREAIEDVATLISSRAAEKDIELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKF 899 Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T +G I ++ + S V LRV DTG+G+ +L+ F Q+ S R EGTG Sbjct: 900 TETGHVLIEVTGSPASEGSVDLTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTG 959 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPL 810 LGL + +V G STP +G++ +I P+ Sbjct: 960 LGLAITSRLVALMDGTISAESTPGEGSVFCVKITMPV 996 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 69/500 (13%), Positives = 144/500 (28%), Gaps = 44/500 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D+ ++ + A +IG + + D + + + +R++ +GK + Sbjct: 28 DSELRYIAVNAAYAEMWDCEAETLIGQKSHECFDSVEQNDRDEK----ERRSLVFGKDQV 83 Query: 150 WPIEGTNLYVPIDLAALPIYSRNRE---FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 V + + + F V + A Sbjct: 84 ALFAHPLKDVRYRIRVQRQRQEDGKTFIVGHFEPIAGVRFETGRSADPAAAHEAQATSQR 143 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + H + I + P + ++V + +++ K E Sbjct: 144 DLAQRGHH---DLLLAAIEAAAVPMLVVDADDQVIAASKH----------SKTATGPWLE 190 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + LP + LQ + N L A + Sbjct: 191 TLLPGGGKMRHVAQEPAHVTAAAEPLQARPQPPVGVEQSNNESDLLAPV-------RDIF 243 Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D + +Y L Y NP+ LT + D G L + PV Sbjct: 244 DAMDVGIVIYDANDVLIYVNPAMDALT---APDYRLEVGTALPDLLQKTCHIKESEDPVA 300 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 ++ + + R N+ +N G+ + + + + Sbjct: 301 RAAWIENRLSVHRQFGSATVER----LTNGRWLRLTNRQLDNGCTLGLRIDVTELKQREA 356 Query: 446 KME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +E + +IL+ + + + + NRA KL G ED+L K Sbjct: 357 LLETHAAQNELFRAILDEMPVSSFVKDEDLRYVYVNRAHRKLTGLTPEDMLGKDDFRIF- 415 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMH 559 + + T ++S + +E + + + L L S T Sbjct: 416 GDQGQALRDVDTSVMSGN--GLVECEIELNATDGRPLQLIDRKVPFTDPSGQRFLLGTTI 473 Query: 560 DISEWKQEKNKLSHAKKIAE 579 D+SE K+ + ++ A+++AE Sbjct: 474 DVSERKRREEEVFEARRLAE 493 >gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1504 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 113/737 (15%), Positives = 239/737 (32%), Gaps = 42/737 (5%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGT 155 +++ + IG LC++ + +++ + ++ E Sbjct: 634 YVNDAACLNNQMTYEQQIGRGLCELLPSHRHSGLFDDYCQVVETGQALIKDSLVYEDEYG 693 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + + + G V +R ++ + + + Sbjct: 694 EQRL------VKAFDIRVAKFGDGFVATWRDITVRQQTEEALRRSEEFKNRILDSSSDCI 747 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 V + + L + ++S + + E F Sbjct: 748 KVLSLDGRLLYMNTGGLCLMEIDDLNSYLNTEWLCFWSGSYRQQAEQALAATKAGEISIF 807 Query: 276 ----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVD 327 T+ + + + S + L + + E Sbjct: 808 SGYCPTVKSTPKWWEVVVSPILDASGQLERILLISRDITDRKKTELLLQQSEARLKLAYK 867 Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + + + + + L + I LS L + S N + + Sbjct: 868 ATRSGLWDWDIIRNSAHISEEYCHLFGFDPTTKSITYENWLSCLHPDDRTSTNETVNRTI 927 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + + + + + + G + + + + Sbjct: 928 QQQQEG----YEDDFRILHPDG--IRWLAAKGQVFYDTVGNAVRMLGNVQDITERKQVEE 981 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ + + E + N EG +L N+ + G +E + + Sbjct: 982 ELRQSEERYRCLAELIPQLVWTANPEGRLLDVNQRWLEFTGLTLEQAHTSGWREVVHPED 1041 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561 ++ ++ + + + + + DI Sbjct: 1042 VLILVKEWSKAVQQGTS--YQAEGRMRRADGVYRWHLHQAIPQKDRQGEIVKWFGSATDI 1099 Query: 562 SEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 KQ + + A+ AE+ + K +FLA +SHE+R+PL I+G+++++++++ Sbjct: 1100 EAQKQLEVERDRLFQLEQAARAEAERANRIKDEFLAILSHELRSPLNPILGWTKMLQSRK 1159 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 F + + I+R+ L +++DLLDI+KI GK++L PV+L + AI Sbjct: 1160 FNET---KTAQALASIERNVKLQTQLIDDLLDIAKILRGKLSLDVTPVNLLFVIESAIDT 1216 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 V A K I + NI ++ D ++QI N+LSNAI FTP GG++ I Sbjct: 1217 VNTAAIAKSIQLHPVL-PNIGQVSGDSNRLQQIVWNLLSNAIKFTPKGGRVEIRLERVDE 1275 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V DTG G+ L + F Q S + G GLGL + + +V+A+ G Sbjct: 1276 -QAHIIVSDTGKGINPEFLPHIFESFRQEDVSITRKYGGLGLGLAIVRQLVEAHGGTITA 1334 Query: 795 FS-TPAKGTLIEIIFPL 810 S G + PL Sbjct: 1335 DSPGEGLGATFTVQLPL 1351 Score = 95.1 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 29/329 (8%), Positives = 86/329 (26%), Gaps = 21/329 (6%) Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETVDKCP 330 H ++ + L+ + + L + E ++ + Sbjct: 289 AHHCTSPRFWQPLEIDLLKELATQMSIALRQAELYQQAQHELKERQQVEAELCQSEEHLR 348 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIAGGLSTLLD--APKLSDNNAIKPVML 386 + G N +T +++ + G + A ++ + + + Sbjct: 349 LALSASRMGTW-NWNIQTGKITWSDNLEALFGLQPGEFDGSFEMFAARVHPEDRDRVLAT 407 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + +Q + M GI+ + + + + Sbjct: 408 VNRAVATGEEYDIEFRVVYPNGTIRWALSQGKVFYDQHGQPMQMAGIDIDVTERKRSAEA 467 Query: 447 MEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLE 502 + + + E D + I E + + A +L+G E++ ++ + + Sbjct: 468 LRESEERFRQLAENI-DAVFWIREVSENRVSYVSPAYERLWGLNSEELYQGQQSWIDRIH 526 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 E ++ + + + L + ++ Sbjct: 527 PEDREATQKAFHEKAVAGK---FDEEYRVILPDGSIRWVHDRCFGLRDKTGEIYRFAGIA 583 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSD 587 DIS K L +++ + D Sbjct: 584 EDISARKHSLAALQESEERFRTSVENMLD 612 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 5/153 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTW 143 W + G L ++++ + G + +V + +++ ++ Sbjct: 1000 LVWTANPEGRLLDVNQRWLEFTGLTLEQAHTSGWREVVHPEDVLILVKEWSKAVQQGTSY 1059 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G +Y A+P R E + FG RL + Sbjct: 1060 QAEGRMRRADG--VYRWHLHQAIPQKDRQGEIV--KWFGSATDIEAQKQLEVERDRLFQL 1115 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 + + ++ E I S + P + Sbjct: 1116 EQAARAEAERANRIKDEFLAILSHELRSPLNPI 1148 >gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1452 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 114/784 (14%), Positives = 258/784 (32%), Gaps = 77/784 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDI-----LHIDPNNHIGDLLKRQNT 142 +D +G +++ + +G A ++G D ++ + Sbjct: 534 LDENGRFLDVNRKWLVALGYAAKDDVVGKWFGDFLAPGFKEHFDLNFPMFKQACVIDGVE 593 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G + + + F R I + ++ Sbjct: 594 FEMV----RKDGDL--ISVTFNGRVQLNSEGHF--MRTHCIFTDITERKRAEDALRESEQ 645 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 ++ + + + + E I + E + +D+ + Sbjct: 646 RYRRIVDTAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFPEDLEDHLRR 705 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYF 315 ++ + +L + + L+ + Sbjct: 706 MEDRRRGCDDCYEKRLRRSDGTAVWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEAL 765 Query: 316 DEGENLTPETVDKCPIP-------------------------FFVYSHGNLFYANPSFLL 350 + + + ++ + Y + + S+ Sbjct: 766 RQEDARLRKLLEIIQYDTANTQSLLDFALSKCLELTGSRFGYIYHYDEDSQSFTLNSWSR 825 Query: 351 LTKYK----------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 ++ + G A ++D P+ + + Sbjct: 826 DVMQACSIANPQSCYALSKTGLWGEAVRQCRAIIVNDFLTDNPLKKGYPEGHAQLTNFLT 885 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCS 456 I + + +A+ + ++ + ++ Q + + + R + + +L Sbjct: 886 VPI-LSNKRIVAVVGVANKQTDYMDSDVIQLSLLMDATWRVVERRQAEESLRKSDERLSL 944 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLT 514 L A +DG+ + + + GY + + L + H ++ Sbjct: 945 ALMAANDGMWDWDISSGTTYFSPRYYTMLGYHPGEFPSDFDTWKGLLHPDDVEHAIHTIS 1004 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571 E L+ ++ + + + R + + T DI+E K+ + L Sbjct: 1005 ESLNNSEGFEIDFRMRTKSGDWSWILGRGRVVETDAEGHAKRMVGTHVDINERKRSQADL 1064 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK AE + KS+FLA +SHEIRTPL I+G ++++ N EY Sbjct: 1065 LSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE----PNDEQKEYLAGAT 1120 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 RS + +++D+LDIS+IE+G+M++ + + + A K +++ + Sbjct: 1121 RSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFDTDAQGKGLVLDFIWD 1180 Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTG 745 + +P ++ D ++QI N++ NAI FT G ++++ + + V+L V DTG Sbjct: 1181 DELPTALIGDEARLRQILFNLVGNAIKFTDKG-EVLVEASLLPSPNTSSVRVLLTVSDTG 1239 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L+ +PF Q S R +G GLGL + + + G I S +GT + Sbjct: 1240 IGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGDISIDSALGEGTTVY 1299 Query: 806 IIFP 809 + P Sbjct: 1300 LSLP 1303 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 48/409 (11%), Positives = 108/409 (26%), Gaps = 21/409 (5%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLT 244 AL + L + + L + Sbjct: 378 VSRRKRAEALYQGQLNFVETLMRAMPAPLFYKDIQGRYLGVNPAFETLMGKPEQDFVGRL 437 Query: 245 EYYAHKDDVLKTEKYPL-----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + + L + + TK + G + + Sbjct: 438 PTETFPQEHGQVFVQRDQELSNLGDMQRYQHVMPTALGLRTLMVTKAVFPGKDGSPAGVV 497 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358 + E E + P+ + + +G N +L+ Y + D Sbjct: 498 GILDDITDRIRNEESLRESEKRFRSLFENAPLAYQSLDENGRFLDVNRKWLVALGYAAKD 557 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 D+ AP ++ + M ++ + + +++TF Sbjct: 558 DVVGKWFGD--FLAPGFKEHFDLNFPMFKQA----CVIDGVEFEMVRKDGDLISVTFNGR 611 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + N M + I + + + + + + I++ +GI I + G I+ N Sbjct: 612 VQLNSEGHFMRTHCIFTDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLN 671 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + +S L GY + +L + FL + +L + + Sbjct: 672 QRMSDLLGYSQDQMLGRNIEDFLFPED---LEDHLRRMEDRRRGCDDCYEKRLRRSDGTA 728 Query: 539 LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + +K LP + DI++ K + L K Sbjct: 729 VWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALRQEDARLRKLLE 777 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 40/391 (10%), Positives = 86/391 (21%), Gaps = 23/391 (5%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 + D G ++ +G +G + H L Sbjct: 400 RAMPAPLFYK-DIQGRYLGVNPAFETLMGKPEQDFVGRLPTETFPQEHGQVFVQRDQELS 458 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + P + + A P ++ +G GI+ + Sbjct: 459 NLGDMQRYQHVMPTALGLRTLMVTKAVFP--GKDGSPAGV--VGILDDITDRIRNEESLR 514 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSS--LTEYYAHKDDV 253 +K+F L E E K+ V ++ A Sbjct: 515 ESEKRFRSLFENAPLAYQSLDENGRFLDVNRKWLVALGYAAKDDVVGKWFGDFLAPGFKE 574 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHP 309 +P+ + + + + + N+ Sbjct: 575 HFDLNFPMFKQACVIDGVEFEMVRKDGDLISVTFNGRVQLNSEGHFMRTHCIFTDITERK 634 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 E E VD + G + Y N L Y + + Sbjct: 635 RAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRN--IED 692 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L L D+ D ++ + ++ + Sbjct: 693 FLFPEDLEDHLRRMEDRRRGCD------DCYEKRLRRSDGTAVWTLVSVKSLPDATGRYD 746 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + + D ++ + + E +L +LE Sbjct: 747 GSLAMFSDITDRKLAEEALRQEDARLRKLLE 777 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 1/165 (0%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 A + + + + + ++ + +++ A + + +G Sbjct: 355 VLFLTGGAVGLCLLLLSIFLALNVSRRKRAEALYQGQLNFVETLMRAMPAPLFYKDIQGR 414 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 L N A L G P +D + + T Q V E+ +L Q + + + Sbjct: 415 YLGVNPAFETLMGKPEQDFVGRLPTETFPQEHGQVFVQRDQELSNLGDMQRYQHVMPTAL 474 Query: 534 KEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 L ++ + K + + DI++ + + L ++K Sbjct: 475 GLRTLMVTKAVFPGKDGSPAGVVGILDDITDRIRNEESLRESEKR 519 >gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1234 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 119/594 (20%), Positives = 204/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + + + P E + Sbjct: 381 PASRLLTHLEECSAEPIKPPEKITVGWAPWFQLVSRIFEEN------KQYTRHLAEQNRR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L + E L Y L +D P F G N S Sbjct: 435 LDKLVAQRTERLKDTTERREQEYV-----LLRSLLDSIPEAIVFKDKEGRYLGCNKSAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + I L + + A +L L Sbjct: 490 MLGFSESEMIGQFS--DALTADEQSARIRAEDERVLTERTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + + ++ + + ++A D + + Sbjct: 542 VLLDTLKIPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDVLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY V + L + + + Y + L+ + + Sbjct: 602 DSEQII--CNPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPV-GAFD 658 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K L + T DI+ K+ + + AK+ AE Sbjct: 659 IEFRMLGKSGGYHWLLSRGRVVEYTPNNQPKRMLGTHKDITRHKRNEVAMLEAKQDAEMA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + P + +Y S + +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP----QQKDYLEKAGFSAHSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L LD+ + A+ L L A EK + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + +RDTG+G++ + Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWIRDTGIGISKEQQA 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q S + GTGLGL ++K +V G + S + G+ Sbjct: 892 TLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVESEMSVGSTFSFTI 945 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 33/305 (10%), Positives = 80/305 (26%), Gaps = 21/305 (6%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 + D G ++ + +G +MIG SD L D + Sbjct: 465 DSIPEAIVFK-DKEGRYLGCNKSAERMLGFSESEMIGQ----FSDALTADEQSARIRAED 519 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + + + P+ L L P Y+R E G + + + Sbjct: 520 ERVLTERTPLRYQEKVELAGKPVLLDTLKIPFYNRRGELLGL--IAVWRDVTREYESAEQ 577 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKD 251 + ++++ + + + + + S + H D Sbjct: 578 LRLSEERYHLAMDAVEDVLWDWYLDSEQIICNPAYYSMLGYKVNEFPALVSTIDELIHPD 637 Query: 252 DVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 D ++ E+Y L + + + + + + E + Sbjct: 638 DRIRVEEYREQYLANPVGAFDIEFRMLGKSGGYHWL-----LSRGRVVEYTPNNQPKRML 692 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + ++ + + F AN S + T ++ + ++L Sbjct: 693 GTHKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSL 752 Query: 370 LDAPK 374 K Sbjct: 753 TPQQK 757 >gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865] Length = 1364 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 129/731 (17%), Positives = 261/731 (35%), Gaps = 65/731 (8%) Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-----GFGIV----HVNRV 189 N G + + PI + G+R GF ++ Sbjct: 160 SGNRPLGLDIASEPRRRAAALQASRSGEPIMTSPVSLLGYRIPSESGFLVLLAVYREGMP 219 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYA 248 P+ +++ S E+ D+ + + + A Sbjct: 220 LQTPQQRMLATTGWVYAPFSVEQMVQSTLGERDDVALDLSDRNEPTHTFYRSGTPSSDSA 279 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + +++ T ++ P +++ + + +L N Sbjct: 280 RRPPIVQLLPIYGRTWIITAHPTASFLASLHQTSPWLMGSLVMGGSVLFAALLWLYFSNG 339 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + L + G + + NP+ + Y S + I L+T Sbjct: 340 LRREEVLRKQMELAALVSNSSEAIVAETPDGRITHWNPAAETMFGYSSEEAIGRT--LAT 397 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 LL + P D ++ ++ +++ + Sbjct: 398 LLLPQPYAVPEVEHP------DEPHPVMTSAAQIMRHRDSHAVYLLASKAPILEGDDTLT 451 Query: 429 PQNGIEPEDVDTRINKRK-------MEIEVMQ-----------LCSILEATSDGIAIINR 470 + + + + ++ +E +V + +IL I + Sbjct: 452 GHSHFFRDISERVRSHQRIVELNASLEHQVAERTSELVKFSALQRAILAHAGYAIIATDS 511 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-- 527 G + N A KL GY E+++ + + F+E L + + QTLE Sbjct: 512 SGFVTLFNPAAEKLLGYKAEEVIGRRKASQFIEPEELQERARMLADQTGTPVAQTLEAVA 571 Query: 528 -----------ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572 + E + L + + + L + Y D++E K + +L Sbjct: 572 ALTSLGRSDTSEWTYVSHEGRHLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKLHEKQLR 631 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A A+ + KSDFLA +SHEIRTP+ AI+G +++ ++ IDR Sbjct: 632 LAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAA----LDMVAKIDR 687 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FA 691 S +L+I+ND+LD SKIE+G+++L P L++ L++ + K + + Sbjct: 688 SARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLP 747 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGV 746 + +L D + Q+ +N++ NAI FT G ++++S + + ++ VRDTG+ Sbjct: 748 RDSRWLLGDALRINQVLVNLVGNAIKFTEQG-EVVLSVRRFPSGDPNKLKLLFSVRDTGI 806 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + PF Q S R G+GLGL +++ +++ G+ + S P +G+ Sbjct: 807 GISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFYF 866 Query: 807 IFPLYDTSHPH 817 + L ++ P Sbjct: 867 VVTLEKSAPPQ 877 Score = 87.4 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 59/440 (13%), Positives = 127/440 (28%), Gaps = 51/440 (11%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 +REF G G+G +H RV A + + ++ + + E++ + + Sbjct: 99 RDYSREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERFMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S L + + L + Sbjct: 157 PESSGNRPLGLDIASEPRRRAAALQASRSGEPIMTSPVSLLGYRIPSESGFLVLLAVYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + +VY+ ++ S Sbjct: 217 GMPLQTPQQRMLATTG-----------------------------WVYAPFSVEQMVQST 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWN 406 L ++D + T + S ++A +P V L +A Sbjct: 248 LGERDDVALDLSDRNEPTHTFYRSGTPSSDSARRPPIVQLLPIYGRTWIITAHPTASFLA 307 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 SL T + ++ + + + ++ + M+L +++ +S+ I Sbjct: 308 ---SLHQTSPWLMGSLVMGGSVLFAALLWLYFSNGLRREEVLRKQMELAALVSNSSEAIV 364 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +G I N A +FGY E+ + + L + T Sbjct: 365 AETPDGRITHWNPAAETMFGYSSEEAIGRTLATLLLP--QPYAVPEVEHPDEPHPVMTSA 422 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + ++ + L + +S DISE + ++ E + Sbjct: 423 AQIM-RHRDSHAVYLLASKAPILEGDDTLTGHSHFFRDISERVRSHQRIVELNASLEHQV 481 Query: 583 SHKSDFL--------ARVSH 594 + ++ L A ++H Sbjct: 482 AERTSELVKFSALQRAILAH 501 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 35/386 (9%), Positives = 88/386 (22%), Gaps = 34/386 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLC-----------DVSDILHIDPNNHIGDLLKR 139 G + + G + + IG L +V P + R Sbjct: 368 PDGRITHWNPAAETMFGYSSEEAIGRTLATLLLPQPYAVPEVEHPDEPHPVMTSAAQIMR 427 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + V + + PI + +G F Sbjct: 428 HR-------------DSHAVYLLASKAPILEGDDTLTGHSHF--FRDISERVRSHQRIVE 472 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L+ H ++ + S + K + + + + S + + L K Sbjct: 473 LNASLEH--QVAERTSELVKFSALQRAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYKA 530 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + E + Q + + S + + E Sbjct: 531 EEVIGRRKASQFIEPEELQERARMLADQTGTPVAQTLEAVAALTSLGRSDTSEWTYVSHE 590 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + + + LT + + A + + Sbjct: 591 GRHLPVLLTLST--LRDDNDQVIGYLGVAVDLT----EQKLHEKQLRLAMDAAKSANQSK 644 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + RT + A + + E +A + + + + Sbjct: 645 SDFLANMSHEIRTPMNAILGMLYLLQRSELPVAALDMVAKIDRSARSLLEIINDILDFSK 704 Query: 440 TRINKRKMEIEVMQLCSILEATSDGI 465 + +E L + + +D + Sbjct: 705 IEAGRIDLERAPFDLNQLFDNIADLM 730 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 67/284 (23%), Gaps = 25/284 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138 D+ G++ + K +G A ++IG R + + + L+ Sbjct: 509 TDSSGFVTLFNPAAEKLLGYKAEEVIGRRKASQFIEPEELQERARMLADQTGTPVAQTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + ++P+ L + N + G+ G + Sbjct: 569 AVAALTSLGRSDTSEWTYVSHEGRHLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ + Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAALDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306 + ++ + E I+L + + S + E + Sbjct: 687 RSARSLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 746 LPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17] Length = 558 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 26/391 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 +F E+ L + + + + + EI +++ + + LG ++ + Sbjct: 247 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + N I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + E +++ + +K I ++ ++ ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VEMKELLGEIKMVLENKSQDKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +V+A+ G + S +GT + P D Sbjct: 525 KHLVEAHHGTVTVESEVGEGTTFTVALPKSD 555 >gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 587 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 95/544 (17%), Positives = 210/544 (38%), Gaps = 37/544 (6%) Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN---LTPETVDK 328 E + + + ++ ++ + +H N P +E T+ + Sbjct: 73 DEAKNIAAARVTLIDKNGTVIGDSHEDYRKMANHANRPEFIQALNETVGKSVRFSATLGE 132 Query: 329 --CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + V HG + A + + ++ + + L+ + Sbjct: 133 KELYVAVPVKRHGRVAGAVRLAIPWREVQAGVWHIRWIIGTAIFIVFVLTVTISSSLAR- 191 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 A + + ++ ++ + I ++ Sbjct: 192 -----EITAPLKEMTEVAKEMAEGKLDNYVRVVSDDEVGALGRGLNYMARRLKDTI--KE 244 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + E ++ +IL + +G+ ++++ IL N A K+F + ++ +E Sbjct: 245 ITEEKNKIQAILTSMVEGVIAVDKDTRILLVNPAFEKIFNVVADQVIGLTV---IEGIRN 301 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWK 565 + L + L E + + + ++ + DI+E + Sbjct: 302 YELEKILLKALKKGRTINQEIEIVPLR---RAFRVNVVPLMRKEKIVGVVAVFRDITEIR 358 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +S+F+A VSHE+RTPLT+I GF E + + Sbjct: 359 ELE--------------KMRSEFVANVSHELRTPLTSIKGFVETLLDGAM--EDREVARR 402 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I+ N + ++ND+L +S IE+ + PV+ +E V + + ++ A EK I Sbjct: 403 FLEIINVETNRLSRLINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNIT 462 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + T ++P I+A+ +KQ+ +N++ NAI +TP G++++S T + + + V+DTG Sbjct: 463 VETDIHPDLPVIMANEDLIKQVLINLVDNAIKYTPENGRVVLSATPS-GGGLKVSVKDTG 521 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + + + F ++ ++ GTGLGL + K ++A+ G + S G+ Sbjct: 522 IGIPPESMSRLFERFYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFT 581 Query: 806 IIFP 809 P Sbjct: 582 FYLP 585 Score = 40.4 bits (93), Expect = 1.5, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 14/241 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + ++ K A ++IG+ + + ++ + LK+ T + Sbjct: 266 VDKDTRILLVNPAFEKIFNVVADQVIGLTVIEGIRNYELEK--ILLKALKKGRTINQEIE 323 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + P L + +P+ + + G + + R + + H Sbjct: 324 IVP-----LRRAFRVNVVPLMRKE-KIVGV--VAVFRDITEIRELEK--MRSEFVANVSH 373 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E++ +S++ + + + + ++ L + L + E + Sbjct: 374 ELRTPLTSIKGFVETLLDG--AMEDREVARRFLEIINVETNRLSRLINDILSLSSIEAKN 431 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 N + + E H + P + A D + + VD Sbjct: 432 KEISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMANEDLIKQVLINLVDN 491 Query: 329 C 329 Sbjct: 492 A 492 >gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar chinensis CT-43] Length = 587 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis BMB171] Length = 587 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 558 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407] Length = 545 Score = 368 bits (946), Expect = 2e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHHGTITVDSEVGEGTTFTVVLP 539 >gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 969 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 116/651 (17%), Positives = 240/651 (36%), Gaps = 29/651 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 R+ KRL + + L E +++K + + + + Sbjct: 197 RLSKRYSRPVKRLANQMAALLEHAPMLIAIQKGQQQPHVTSRLWHQFYRTHPLPDQPPLH 256 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + +++E ++ + ++ + + L + Sbjct: 257 PLLPTKQEDLTKINSSAQELNVTLDGHEYHFLFTRFILSEELQEHAQPQICTIA-LDISD 315 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAG 364 H + E EN V P + + + + + + ++ Y I Sbjct: 316 HKLVERQLSESENRFHSLVSNLPGAVYRCNLDSAWSMLFISDGIERISGYPKESFIHN-- 373 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L + D+ + ++ + I + + + Sbjct: 374 -LERSFASIIHKDDLIMVEQKVFEGVNLNRSYHMEYRIIHQDGAT-RWVYEEGRAHFGKH 431 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + +G+ + D + + + +L + + A+ G E S + + ++ Sbjct: 432 GQALWLDGVIFDITDRKQMEHTLHQNRTRLQAAVVASRAGTFYYTIENDQNSWDARMLEI 491 Query: 485 FGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +G ++ S + + + QT + + + L Sbjct: 492 YGLEASQFDNNYAAWVRCIHPEDQHSTEQAFFRALSASYHTQTYDIEHRIVRPDGSIHHL 551 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 R S S + DI+E K+ + L A++ AE + KSDFLA +SHEIR Sbjct: 552 RTQAWIQRDSQGKAEQVSGLVFDITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEIR 611 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ A+IG EV+ + + Y + +G +LD++N +LD+SKIESG+M L Sbjct: 612 TPMNAVIGMGEVLLETKL----DQEQRHYIETLQHAGEALLDLINAILDLSKIESGRMEL 667 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 + L + V E L Q+ ++ I + ++ + P I D ++QI N++ NA+ Sbjct: 668 VEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNAV 727 Query: 717 HFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 FT G + + + ++ ++ D+G+G+ + E + F Q +S R G+G Sbjct: 728 KFTDEGS-VTVEIRSIEQEKTLLFKITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSG 786 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT-------SHPHDC 819 LGL + + +V+ G+ ++ S +G+ P T S+PHD Sbjct: 787 LGLTICRHLVEHMKGRIWVDSEEGQGSCFSFTLPCRPTAPKAEIISNPHDA 837 >gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1359 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 103/401 (25%), Positives = 191/401 (47%), Gaps = 21/401 (5%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + E + + + + + + T+DGI + + + ++ GY + Sbjct: 570 LAIEIKERKRIESLLREREERYELAVSGTNDGIWDWDILTNEVYYSPVWMRILGYEENPL 629 Query: 493 LRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 L + ++ + + + + L+ Q E I ++ L + + + Sbjct: 630 LNRLSSWSDHVYPDDLHQVIEDINHHLA-GQTQIYENIHRIKHRDGHYLWIATKGRCIRD 688 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 T+ DI++ K + +L AK+ AE + KSDFLA +SHEIRTP+ A+IG Sbjct: 689 RDGNPYRLVGTITDITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGM 748 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + ++ + + + E+ + I S + +L I+ND+LD SKIESGK+NL +P L Sbjct: 749 TSLLLDTQLTA----QQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRA 804 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + E++ L+ A +K I + + IP I+ D+ ++QI +N++SNA+ FT +G + Sbjct: 805 CIEESLELLSSKARDKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTETG-DV 863 Query: 726 IISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +IS T + VRDTG+G++ +++ KPF Q+ S + GTGLGL + Sbjct: 864 VISVTPTAEISEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAI 923 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF---PLYDTSHPHD 818 ++ + + GK ++ S G+ P+ S P + Sbjct: 924 SQRLSELMGGKMWVESEEGVGSTFYFTVIATPVSSDSEPDN 964 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 6/136 (4%) Query: 96 KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152 S + +G ++ D + I L T + Sbjct: 612 VYYSPVWMRILGYEENPLLNRLSSWSDHVYPDDLHQVIEDINHHLA-GQTQIYENIHRIK 670 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 Y+ I I R+ +R G + + K ++ + K Sbjct: 671 HRDGHYLWIATKGRCIRDRDGNP--YRLVGTITDITDKKIAQEQLKAAKEEAETANRTKS 728 Query: 213 GHSSVEKEKYDIFSQQ 228 ++ + Sbjct: 729 DFLAMMSHEIRTPMNA 744 >gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4] Length = 561 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 26/391 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 190 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 249 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 +F E+ L + + + + + EI +++ + + LG ++ + Sbjct: 250 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 306 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 307 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 352 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + N I + + ++ DLLD+SKIE L+ Sbjct: 353 IKGFSETLLD---GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 409 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + E + E +++ + +K I ++ ++ ++ D +KQI +N+++NAI +TP+ Sbjct: 410 VEMKELLGEIKMVLENKSQDKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTPA 468 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 469 GGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 527 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +V+A+ G + S +GT + P D Sbjct: 528 KHLVEAHHGTVTVESEVGEGTTFTVALPKSD 558 >gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris marina MBIC11017] Length = 1660 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 129/790 (16%), Positives = 257/790 (32%), Gaps = 92/790 (11%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G L ++++ G K++ M L D+ + ++ + + Sbjct: 659 QGQLLDVNQRTLDIHGLTRDKILQMNLTDLVSEDSLQLFQKHFQQAEQGISLQFEDIAKN 718 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE-- 209 + + +P+++ R R+ + R ++ + + ++ + Sbjct: 719 FQDSMASLPVEI-------RIRKVALKRNPVLITTLSDISRRKQQQTAIESIVKGTADKT 771 Query: 210 -------------------------IKKGHSSVEKEKYDIFSQQSPPP----------HL 234 IK + + P Sbjct: 772 GSDFYQSCVQYLANIFRVHYAFVAKIKDETWTQSRVLAMWTGDSFATPYDFDLSDTPCLE 831 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 +++ + + K L P S S L + I + + Sbjct: 832 TYRHEWCCVPNDLSAKFPTLSRHLSPQGESYISCLIKNSQGQVIGNLGIIDTKPLPVDTS 891 Query: 295 NSKESFEYLSHR-----NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348 N + + + R + + +D P ++ G N Sbjct: 892 NLEFVLQLFATRVGAEMERQASEDALRRSQKQLQAVIDNSPAAIYLKDLEGKYLIFNRVL 951 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L + L L + Sbjct: 952 GELFDIDPQTFLGKTDF--DLFPRQIAEKLRKNDINTLAAGQ-----VQTIEEVVTHADG 1004 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + F + G+ D + + ++ L +++ I Sbjct: 1005 SRHTYIANKFPVLDPQGHVYAIGGVSTNISDRKRTENQLRESQQLLRLVIDNIPQLIYWK 1064 Query: 469 NREGIILSTNRAVSKLFGY-PVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526 + + I L N+ + G E ++ K + ++S + + Sbjct: 1065 DHDSIYLGCNQNFAASMGLDSPEQVIGKTDDALSKPHKHLAASQQNDERVISTGIPELHV 1124 Query: 527 KITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE- 581 + + + L + T DIS+ KQ + L + E Sbjct: 1125 LQIFNTEQNGN-VWADTNKIPLKDPFDNTVGILGTYEDISDRKQAEQALKQVNEELEHRV 1183 Query: 582 -----------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + KSDFLA +SHE+RTPL I+G+++V+K P + Sbjct: 1184 VLRTKELQAAKEAADAANRAKSDFLANMSHELRTPLNGILGYAQVLKRDHH---LLPCHQ 1240 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + N I +SG +L +++D+LDI+KIE+ K+ L+ + + ++L Q+ A EK I Sbjct: 1241 QALNTIHQSGEHLLTLIDDILDIAKIEARKLELNISDIHFPSLLESIVNLFQMRAQEKNI 1300 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVIL 739 A+++P+ I +D + ++QI LN+LSNAI FT G Q+ +S + ++ Sbjct: 1301 QFVYRPADSLPQGIQSDKKCLRQILLNLLSNAIKFTDQG-QVTLSVEIEQHTSQQIKLKF 1359 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG+G++ ++E+ PF Q+ R EGTGLGL +++ +V+ G S Sbjct: 1360 TITDTGIGISPDQIEQIFHPFEQV-GDLNRRAEGTGLGLSISRQLVELMGGTLQAESCEE 1418 Query: 800 KGTLIEIIFP 809 KG+ P Sbjct: 1419 KGSTFWFSIP 1428 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 13/193 (6%) Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L S I L + F Q E +++ + R Sbjct: 568 LQDSAGKPIGVLCCLSSSPIPDGEFAYSILQIFGARAGAELERLQGIKALEQLNSELEAR 627 Query: 446 ------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++ L +IL DGI I +G +L N+ + G + IL+ T Sbjct: 628 VRSRTVALKQSQQDLRTILNTAYDGIYIHTLQGQLLDVNQRTLDIHGLTRDKILQMNLTD 687 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYS 555 + +++ + + + +L+ + ++ + + +RI L + Sbjct: 688 LVSEDSLQLFQKHFQQAEQG---ISLQFEDIAKNFQDSMASLPVEIRIRKVALKRNPVLI 744 Query: 556 LTMHDISEWKQEK 568 T+ DIS KQ++ Sbjct: 745 TTLSDISRRKQQQ 757 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 7/127 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLE-QNTPSVMNHYL 513 SI + SD IA+ G I N LFGY E +L +P+ VF + + L Sbjct: 60 SIFDGASDAIALC-EAGCITYVNPQHLNLFGYSTPEPLLGQPWQVFYSQEEARRIETDIL 118 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++L Q + T + + + + + D+++ ++ Sbjct: 119 PKLLPN---QGWQGETYAQRQGGEAFIAEMSFSLAQPAQ-MLMVSRDVTQQAYIESWQDA 174 Query: 574 AKKIAEK 580 I ++ Sbjct: 175 QTTILKQ 181 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 20/247 (8%), Positives = 55/247 (22%), Gaps = 12/247 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTT 148 D G + L + +G D+ + + L + Sbjct: 939 DLEGKYLIFNRVLGELFDIDPQTFLGKTDFDLFPRQIAEKLRKNDINTLAAGQVQTIEEV 998 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G+ P+ + G+ + + + Sbjct: 999 VTHADGS--RHTYIANKFPVLDPQGHV--YAIGGVSTNISDRKRTENQLRESQQLLRLVI 1054 Query: 209 EIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKD----DVLKTEKYPL 261 + + + L +V T+ K + + Sbjct: 1055 DNIPQLIYWKDHDSIYLGCNQNFAASMGLDSPEQVIGKTDDALSKPHKHLAASQQNDERV 1114 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 +++ L + F+T L++ + L S ++ Sbjct: 1115 ISTGIPELHVLQIFNTEQNGNVWADTNKIPLKDPFDNTVGILGTYEDISDRKQAEQALKQ 1174 Query: 322 TPETVDK 328 E ++ Sbjct: 1175 VNEELEH 1181 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 65/434 (14%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + + + + + +L + Q + + Sbjct: 88 FGYSTPEPLLGQPWQVFYSQEEARRIETDILPKLLPNQGWQGETYAQRQGGEAFIAEMSF 147 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----------------FV 335 + + + L + AY + ++ + + + Sbjct: 148 ---SLAQPAQMLMVSRDVTQQAYIESWQDAQTTILKQLATGTPTIEVLETIMDSLECHLL 204 Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK--------------------L 375 G + + +P L E+ + + + Sbjct: 205 GGRGAVLFVDPYHYLRLGVAPHLPPEMINIVERIEISDTGGPLSQAVRSKEPVISELNTY 264 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 S + + + + ++C + IQ ++ + + Sbjct: 265 SPLTTTEQIAIDQGFQSCWSFPILNSQIQVVGIMAVYFKTSRVPTEYEQKFLDIALDLAG 324 Query: 436 EDVDTRINKRKMEI-------EVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGY 487 ++ + ++ + E +L +I + D + +N G +L Sbjct: 325 LALEQQQSRAQKEENSSDILRSNAELQAIFDTFPDLLLRVNSYGTLLGFKGGHYQDDLFD 384 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE----KITLGSTKEEKLLSLRI 543 E L K L + + LTE+L E + + E ++L Sbjct: 385 QPEAFLGKQIQSILPEEISNKFLTVLTEVLESQQIHQFEYSLFRENITQYYEARILPA-- 442 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + ++S+ K+ + LS K + DF + EI + Sbjct: 443 ------DPGQVLALIRNVSDRKRAELALSGLFNGTSKVTG--DDFFQVLVQEI----AST 490 Query: 604 IGFSEVIKNQRFGP 617 + SEV+ +Q G Sbjct: 491 LNMSEVMLSQVDGE 504 >gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1] gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter aurescens TC1] Length = 1153 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 111/475 (23%), Positives = 203/475 (42%), Gaps = 27/475 (5%) Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN-- 422 GLS LL + SA + + Sbjct: 255 GLSPLLPESGTPQKDGRVYAAALELLPYLPVFSAVFFSRSRPIGEDRILLVTGLVVIVFV 314 Query: 423 --QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + +N ++++++ +R E+E L +I+ ++ D I +G+I S N Sbjct: 315 IVRQVLIVVENVTLTRELESKVAQRTAELEG--LGAIVNSSGDAIIGETPDGVITSWNPG 372 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 ++FGYP + + + F+ Q+ L + + K++ Sbjct: 373 AERIFGYPASEAIGRQGDFFVPQDLVENERRALESTAQSG--HVQNYESQRQRGDGKVIP 430 Query: 541 LRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + + + S DI+E K + +L A++ A + S KS+FLA +SHEIR Sbjct: 431 VSVTLSPVRGGSGIRGVATISRDITERKAAEKELLAAREAALEASRLKSEFLATMSHEIR 490 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL A+IG + ++ + + +YA + +G ++L ++ND+LD SK+E+GK++L Sbjct: 491 TPLNAVIGLTSLMMDTPL----SEGQRQYAQGVKGAGEVLLTLINDILDFSKLEAGKVDL 546 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716 E V E LV A K + + + ++P R++ D ++QI LN+ SNA+ Sbjct: 547 DINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQILLNLSSNAV 606 Query: 717 HFTPSGG-QIIISTTHTS--------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 FTP G ++ +S + VRDTG+G++ ++ + F Q S Sbjct: 607 KFTPDGEVEVQVSVLAHDPNLAHDPNKASLRFEVRDTGIGISAENHQRLFESFAQADAST 666 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820 R GTGLGL +++ + + GK + S P G+ PL + + + Sbjct: 667 TRRYGGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDLELPLGPAATDTESL 721 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 12/139 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + + G A + IG + D + N L+ G + Sbjct: 362 PDGVITSWNPGAERIFGYPASEAIGRQ-GDFFVPQDLVENER--RALESTAQ-SGHVQNY 417 Query: 151 ---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSH 206 G +P+ + P+ + G RG + + Sbjct: 418 ESQRQRGDGKVIPVSVTLSPVRGGS----GIRGVATISRDITERKAAEKELLAAREAALE 473 Query: 207 LHEIKKGHSSVEKEKYDIF 225 +K + + Sbjct: 474 ASRLKSEFLATMSHEIRTP 492 >gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56'] gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56'] Length = 961 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 132/800 (16%), Positives = 259/800 (32%), Gaps = 65/800 (8%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 + R T IDA G + S L +G +++ +L D++ Sbjct: 1 MGETAGQPAWATRAPSRGTARIDASSGKILRASSSLCLLLGYSEGELLQKKLSDLALPED 60 Query: 127 IDPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + L + + +G + + + + + +R V Sbjct: 61 RAGSLAAWRSLLEADEEELTFEMACRCKDGGVRSLHVT--GVFVRDVRQRP--YRAVVFV 116 Query: 185 HVNRVDNDPRALGKR-------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------- 230 + + K ++ + I Sbjct: 117 EDITEPRNAEERALAAEQALAESEAKLRNIFHSNMAPMAFWTHDGRIIEANDAYLKLVGH 176 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY----TKK 286 V + L S + P + + + + + Sbjct: 177 TREEVAAGLVRWDADMSPEDRAAGDRALAELRASRWTFTPFERTYVLRDGTRIKMLVSGC 236 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345 G + + + A E + + +V G Y++ Sbjct: 237 LLPGERYEEAGFAIVLDMTALRQT-EAAVQRCEQVFRAIGESIDYGLWVSDPAGQNIYSS 295 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKL----------SDNNAIKPVMLYRSDRTCIA 395 +FL + K G + TL + + + D Sbjct: 296 HAFLQMAGIKQEQCSGH-GWIETLHPDDRHKVAIFEECVRRGEPFEEELRYVSPDGVVHP 354 Query: 396 ASARLHTIQWNRENSLAMT------FIPFEKANQFPENMPQNGIEPEDVDTRINKR---- 445 R ++ R A + E+ + ++ I +R Sbjct: 355 VLNRGVPVRDERGEITAWVGICLDVSRLKRTEDALRESEGRLRAALDEAQRVIAERGRLE 414 Query: 446 -KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQ 503 ++ +L S++ + D I ++ + + + G+P E + + L Sbjct: 415 DELRARERELASLMANSPDVIYRLDLDLRCTFMSPTSWTVMGFPPEHYIGRTPRENGLPT 474 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 V E L+ Q +E G +++ + + D++ Sbjct: 475 EVIEVSEAVCHEALATARPQRMEFSLGGRRFRARIIP---ELGPEGAVDSFMGITEDVTA 531 Query: 564 WKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + + + A+ AE+ S K DF+A +SHE+R+P+ AI+G++ +++ + Sbjct: 532 ERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARILRGRAPE 591 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P P I+R+ L D+V++LLD+S+I SGK+ L +PV L + A+ +Q Sbjct: 592 P---PTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAIQ 648 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L A K I + +S + D + Q+ N+LSNA+ FTP GG+I ++ + Sbjct: 649 LAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALR-RAGAH 707 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 L V DTG+G+ L + F Q S + G G+GL + K +V+ + G + S Sbjct: 708 AALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVAS 767 Query: 797 T-PAKGTLIEIIFPLYDTSH 815 G + PL S Sbjct: 768 QGEHLGATFTVTLPLAGVSQ 787 >gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1] gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32] gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS [Shewanella putrefaciens 200] Length = 1234 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 125/594 (21%), Positives = 207/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITQGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDQQVLKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + Y + L + E Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSAIDHLTHPDDRIRVEEYRNQYLQDPVDA-YE 658 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + T DI+ K + L AK+ AE Sbjct: 659 IEFRLLGKNGTYHWVLCRGRVVEFTADGQPKRMLGTHKDITRQKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + P + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + E Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITQGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDQQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELLGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S ++ H DD ++ E+Y L + + N + Sbjct: 614 SMLGYKTNEFPALVSAIDHLTHPDDRIRVEEYRNQYLQDPVDAYEIEFRLLGKNGTYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + L + + + + + Sbjct: 674 LCRGRVVEFTADGQPKRMLGTHKDITRQKSNEVALLEAKQDAELANL 720 >gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis BS107] Length = 754 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 183/372 (49%), Gaps = 14/372 (3%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + +++ +L + E +D + +++ +G I N A +++ GY ++ + K L + Sbjct: 237 QAQQLQSQRLALVAENANDSVFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGALLNGD 296 Query: 505 TPS-VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559 + L + + K+ +LL L + Sbjct: 297 DTDMAVVRALEKGRATGKP--FRLEICNRRKDGQLLWLETNQVPMLRDDGTVETIIAVER 354 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++ KQ + +L A+ AE+ + KS+FLA +SHEIRTP+ +IG +++++ + Sbjct: 355 DVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQL---- 410 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + YA+ I S +L ++ND+LD+SK+++G++ L L + + L + A Sbjct: 411 DEEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEPQA 470 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-E 736 EK I + + A ++PRI+ D R ++Q+ LN++ NA+ FT +GG + ++T+ + Sbjct: 471 QEKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDRLR 530 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ + ++ + F Q + R GTGLGL +++ + +A G+ + S Sbjct: 531 LRFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDVTS 590 Query: 797 TPAKGTLIEIIF 808 P KG+ + Sbjct: 591 DPGKGSCFSVHL 602 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 33/411 (8%), Positives = 91/411 (22%), Gaps = 40/411 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143 + +D G + ++E + G + IG + + D + + Sbjct: 257 VFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGALLNGDDTDMAVVRALEKGRATGKPF 316 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G + ++ +P+ + + K Sbjct: 317 RLEICNRRKDG--QLLWLETNQVPMLRDDGTVETI--IAVERDVTAAKQYEQQLKDARIA 372 Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +K + + + ++ + + L + Sbjct: 373 AEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQLDEEQKLYADTILGSARTLLSLI 432 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +L + E +Q + ++E L P + + Sbjct: 433 NDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEPQAQEKGITLDLNIAPDVPRIINGD 492 Query: 319 ENLTPETV-----------DKCPIPFFVY-----SHGNLFYAN------------PSFLL 350 + + + D + V L ++ Sbjct: 493 DRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDRLRLRFSVTDTGIGIAKEKQDQIFE 552 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 GG L +L + + S L N Sbjct: 553 RFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDVTSDPGKGSCFSVHLRMQPATGANL 612 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + E M E ++ + ++ ++ E + L ++ Sbjct: 613 AEVAASAQQAGRSL-EGMRILVAEDNRINRLLVEKYLQDEPVTLEFAVDGA 662 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 7/140 (5%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + F+ G + + N +F +T Y+ + I G L Sbjct: 237 QAQQLQSQRLALVAENANDSVFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGA---LL 293 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 +D ++ + R+ + L + Sbjct: 294 NGDDTDMAVVRALEKGRATGKPFRLEICN---RRKDGQLLWLETNQVPMLRDDGTVETII 350 Query: 432 GIEPEDVDTRINKRKMEIEV 451 +E + + +++++ Sbjct: 351 AVERDVTAAKQYEQQLKDAR 370 >gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 862 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 119/526 (22%), Positives = 214/526 (40%), Gaps = 31/526 (5%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 N + L RN + +E E L + + + G + YANP+ T Sbjct: 196 NRQFARYTLLQLRNDALMEK-LNESEYLFRTLTEHSSMGVLLLDDGRVLYANPAVEAATG 254 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 Y + + + ++D + P + ++ I+ + Sbjct: 255 YGLDELMG--MMIREIVDPEHRGVVDQSTPGSVGQAIGRS------EFRIRRKDGTVRWV 306 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINRE 471 ++P Q + G + D + ++ + + + E SD + ++ E Sbjct: 307 EYVPALVEFQGRKV--VLGACADITDRMLVRQARQENEERYRVLFETASDAMYVVGLDPE 364 Query: 472 GII---LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 G + N GY +E++LR + S + Sbjct: 365 GRLDLFRDANVQGCAALGYSLEELLRLGPRDMTHLYELKHAGELQRRLRSDGCAVYDARH 424 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 +++ + + + K DISE K+ + +L AKK AE + KS Sbjct: 425 V---SRDGRFFPVEVSAKLFSHEGKQAVLCIARDISERKEAELRLEAAKKQAEVANQAKS 481 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTPL ++G ++++ + +Y + SG +L ++ND+LD Sbjct: 482 EFLANMSHEIRTPLNGLLGMLQLVRMGDL----DAERSQYLDVAMNSGEGLLAVINDILD 537 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +SKIESGK L ++ V + A K + + ++P I AD ++ Sbjct: 538 LSKIESGKFELAPVDFNVHALVQSVGETFRFPARSKGVELIVETDADMPVFIHADQVRIR 597 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFG 761 QI N++ NA+ FT +G +I IS + + ++ +RV DTGVG+ + +PF Sbjct: 598 QILYNLVGNAVKFTLAG-EIRISLSMPFQTGNRGQMEIRVADTGVGIPLDQQAALFEPFV 656 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 Q + + RG GTGLGL + K +V G+ + STP +GT + + Sbjct: 657 QASTAPKTRGSGTGLGLSIVKRIVGFMGGRVRLDSTPGEGTTLTVS 702 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 64/253 (25%), Gaps = 24/253 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-----HIDPNNHIGDLLKRQNTWYGK 146 G + + + G +++GM + ++ D +G + R + Sbjct: 239 DGRVLYANPAVEAATGYGLDELMGMMIREIVDPEHRGVVDQSTPGSVGQAIGR-----SE 293 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205 + +GT +V A + EF G + G R + ++++ Sbjct: 294 FRIRRKDGTVRWVEYVPALV-------EFQGRKVVLGACADITDRMLVRQARQENEERYR 346 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L E V + +++ + E T Y L + Sbjct: 347 VLFETASDAMYVVGLDPEGRLDLFRDANVQGCAALGYSLEELLRLGPRDMTHLYELKHAG 406 Query: 266 ESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 E + D ++ + + + L S + Sbjct: 407 ELQRRLRSDGCAVYDARHVSRDGRFFPVEVSAKLFSHEGKQAVLCIARDISERKEAELRL 466 Query: 320 NLTPETVDKCPIP 332 + + Sbjct: 467 EAAKKQAEVANQA 479 >gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2] Length = 1755 Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats. Identities = 115/738 (15%), Positives = 248/738 (33%), Gaps = 34/738 (4%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 + G + GM + D+ N D + R + + + +G Sbjct: 516 ANHAYHTLFGVDPDTLPGMSMVDLLGKDLFAANRPHIDAVLRGDEQTFERAILGPDGKER 575 Query: 158 YVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + +P + E GF + + A + ++E Sbjct: 576 HSL--AHYIPDR-IDGEVQGFYVMEHDVTELVEGRQQLAAALRENQVLLQTINEQLLYSV 632 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 S + Q H + ++ + + + + ++ + Sbjct: 633 SDPNGVIIEANDQFCLVHGYTREEIIGRDHHLFNSGLHPAAFWQNMWDTVLANKAWHGEI 692 Query: 276 --HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC---- 329 + + ++ + +++ R + DE + Sbjct: 693 CNKGKDGSLLWFDTVIAPCLDSEGQLERFVALRIDVTERRAADEERKRLNVLLGNVLRSA 752 Query: 330 --PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G + N + Y+ + + L + + Sbjct: 753 SEVSIIATDQDGLITIFNSGAQRMLGYQEDEMVGRCTPAVIHLPDEVNARGEELSRQYGQ 812 Query: 388 RSDR--------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + +A R T + + ++ GI + + Sbjct: 813 AIEGFRVFVHVPEFVAPETREWTYVCKDGSWRRVMLAVTAMRDEQGVLTGYLGIATDITE 872 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV---EDILRKP 496 + ++++E+ + QL S + G+ E I+ N + +++ P + + Sbjct: 873 QQQARQELELALDQLASAADVAEMGVWKWTLEENIVQWNPKMFEIYALPEVKGGVLDFEG 932 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554 + L + L L + + + + + + + Sbjct: 933 WRSRLHPDDVDATMASLQVALDGRGVYDPVFRVVHPDGQIRYVQAAGKVGRDAKGRAVSF 992 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+ KQ +N L A++ AE+ + KS FLA +SHEIRTP+ A++G ++++ + Sbjct: 993 VGINQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQ 1052 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 R +Y + +L ++ND+LD SKI++GK+ L SL++ + E + Sbjct: 1053 LDT----RQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVV 1108 Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT 732 + + K + + ++P + D + QI +N+ NA+ FT +G +I +S Sbjct: 1109 LSGNQHHKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIHLSALRQ 1168 Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V L V DTG+G+T +L + F Q +S R G+GLGL + + +V Sbjct: 1169 DAASVTLQVSVTDTGIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGS 1228 Query: 791 KFYIFSTPAKGTLIEIIF 808 + + S P +G+ Sbjct: 1229 ELRVDSEPGRGSCFSFEL 1246 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 50/536 (9%), Positives = 125/536 (23%), Gaps = 56/536 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + + G A + +G + + + + T Sbjct: 365 QGVVTSWNRGAEDIFGYRADEALGKTMAQLVVPDDLVYEEEDILARIGRGERLDHFTTRR 424 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + + ++ PI + G V K L+ + + Sbjct: 425 RHKNGQLIDVSVSVSPIIDDSGRIVGTSK--TVRDISEQVVIERQMKELNAHLEEMVATR 482 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRM--------------------KNKVSSLTEYYAHKD 251 + P + + ++ Sbjct: 483 TAELDRARRVLRTVLDAVPSMIGYWDKQLVNRVANHAYHTLFGVDPDTLPGMSMVDLLGK 542 Query: 252 DVLKTEKYPLLTSEESSLPEQEDF--------HTINLNQYTKKQYFGTLQNNSKESFEYL 303 D+ + + E + + E Sbjct: 543 DLFAANRPHIDAVLRGDEQTFERAILGPDGKERHSLAHYIPDRIDGEVQGFYVMEHDVTE 602 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 L+A E + L ++ +G + AN F L+ Y + I Sbjct: 603 LVEGRQQLAAALRENQVLLQTINEQLLYSV-SDPNGVIIEANDQFCLVHGYTREEII--- 658 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G L L + + + L + + Sbjct: 659 -GRDHHLFNSGLHPAAFWQNMWDTVLANKAWHGEICNK---GKDGSLLWFDTVIAPCLDS 714 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVS 482 + + + + R + + + L ++L + S+ I +++G+I N Sbjct: 715 EGQLERFVALRIDVTERRAADEERKRLNVLLGNVLRSASEVSIIATDQDGLITIFNSGAQ 774 Query: 483 KLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSL-----------DLRQTLEKIT 529 ++ GY ++++ + P + L + + + + Sbjct: 775 RMLGYQEDEMVGRCTPAVIHLPDEVNARGEELSRQYGQAIEGFRVFVHVPEFVAPETREW 834 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K+ + + + + Y DI+E +Q + +L A Sbjct: 835 TYVCKDGSWRRVMLAVTAMRDEQGVLTGYLGIATDITEQQQARQELELALDQLASA 890 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 57/443 (12%), Positives = 121/443 (27%), Gaps = 37/443 (8%) Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 EF G RGFG + RV A ++ + E+Y I Sbjct: 91 YSASRDMKVEFPGARGFGFIR--RVPLADEAAFVARARQDDAPGFAIRQLQPHAGERYVI 148 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + + + + D LT+ + + + L Sbjct: 149 QYLEPQAGNQQAIGLDIASEANRKAAADAAMRSGQVQLTAPITLVQAMKAPSKSFLMLMP 208 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 D T+ P + Sbjct: 209 IY-----------------------RDGMGRDSEAQRVAATLGWSYAPILMDEVMGAIRI 245 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 NP T + D+ + + + R Sbjct: 246 NPELTQFT----LSDVSDPRKPVVFYASRAAAGAVIGSRSVTKTILGRTWQIEVRFQPAF 301 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 L + ++ + +R+ ++++ ++ +I+E++ DG Sbjct: 302 LAG---LHQNNLYAVGLLGVLASLGFAIMVFLWSSSRLRQQQLIDAQARMAAIVESSIDG 358 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G++ S NR +FGY ++ L K + + + + + Sbjct: 359 IIGKTLQGVVTSWNRGAEDIFGYRADEALGKTMAQLVVPDDLVYEEEDILARIGRG-ERL 417 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T K +L+ + + + + S + T+ DISE + ++ E+ Sbjct: 418 DHFTTRRRHKNGQLIDVSVSVSPIIDDSGRIVGTSKTVRDISEQVVIERQMKELNAHLEE 477 Query: 581 ESSHKSDFLARVSHEIRTPLTAI 603 + ++ L R +RT L A+ Sbjct: 478 MVATRTAELDRARRVLRTVLDAV 500 >gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 1187 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 119/659 (18%), Positives = 231/659 (35%), Gaps = 54/659 (8%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLT 244 A + + K+ L + + + + Sbjct: 165 RTRAETAHAALRDSEAKYRLLADNAADCIFWVDIDGRYKYISPACEQISGHTPEEFLADP 224 Query: 245 EY---YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 E H DD + ++ ++ + + + + + + E Sbjct: 225 ELMVNIIHLDDRMAYRQHFEDSTNTDRGELEVRIMHKDGGVRWIGHHCKPIHDENGEYLG 284 Query: 302 YLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFFVYSH--GNLFYANPSFLLLTKYK 355 + ++ + + E + F + G + NP+ ++ Y Sbjct: 285 QHGANRDITARKRVEQELHDSSERFRVASESIRDAFILIDGKEGKIVLWNPAAAVMFGYT 344 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMT 414 + I + L L+ P+ + A+ + + + L ++ N E Sbjct: 345 KNEAIGLP--LHQLIGPPRFHEAAAVGLAHFAHTGEGAAVGRTLELPALRRNGEEFSVEL 402 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + Q GI + + + + ++ +L +E + + I I + +G I Sbjct: 403 SLSAI---QLGGQWHAAGIVRDITERKQAEEQLR----KLAQAVEQSPESIIITDLDGNI 455 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N A +K GY E+I+ + + TP L + +S QT + + K Sbjct: 456 EYVNEAFAKNSGYCHEEIIGQNPRLLNSGKTPKESYTALWDAISNG--QTWKGEFINKRK 513 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI------------- 577 + II + + Y DI+E + + +L + Sbjct: 514 DGSEYVDFAIITPIRQPNGGITHYVAVQEDITEKRHQGEELDQHRHHLEELVASRTAELE 573 Query: 578 -----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ + KS FLA +SHEIRTP+ AIIG + +++ + R + ID Sbjct: 574 SARTSADAANQSKSAFLANMSHEIRTPMNAIIGLTYLLRQNTPTSEQSVR----LDKIDA 629 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + +L I+ND+LD+SKIE+G++ L SL + SL+ + K + I + Sbjct: 630 AALHLLSIINDILDLSKIEAGRLELEQTDFSLAAVLDHISSLITDQSRAKGLTIEMDNGD 689 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGM 748 + D ++Q LN NA+ FT G I + + V V+DTG+G+ Sbjct: 690 VPLWLRGDPTRLRQAMLNYAGNAVKFTERG-TIWLRARLLKETDAGLLVRFEVQDTGIGI 748 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 L + F Q S + GTGLGL + + + + G+ + S +G+ Sbjct: 749 AAENLPTLFEVFAQADISTTRKYGGTGLGLAITRRLANIMGGEVGVESALGQGSTFWFT 807 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 48/419 (11%), Positives = 107/419 (25%), Gaps = 19/419 (4%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110 + + + ++ DSE + W +D G K IS + G+ Sbjct: 159 EDALAARTRAETAHAALRDSEAKYRLLADNAADCIFW-VDIDGRYKYISPACEQISGHTP 217 Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 + + V+ I D + NT G+ + + I PI+ Sbjct: 218 EEFLADPELMVNIIHLDDRMAYRQHFEDSTNTDRGELEVRIMHKDGGVRWIGHHCKPIHD 277 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 N E+ G G ++F E + + K +P Sbjct: 278 ENGEYLGQHGAN--RDITARKRVEQELHDSSERFRVASESIRDAFILIDGKEGKIVLWNP 335 Query: 231 PPHLR---MKNKVSSLTEYYAHKDDVLKTEKYPLLT-----SEESSLPEQEDFHTINLNQ 282 + KN+ L + L E +++ + + N Sbjct: 336 AAAVMFGYTKNEAIGLPLHQLIGPPRFHEAAAVGLAHFAHTGEGAAVGRTLELPALRRNG 395 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341 + + +E + V++ P + GN+ Sbjct: 396 EEFSVELSLSAIQLGGQWHAAGIVRDITERKQAEEQLRKLAQAVEQSPESIIITDLDGNI 455 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y N +F + Y + I L + + + S+ Sbjct: 456 EYVNEAFAKNSGYCHEEIIGQNP----RLLNSGKTPKESYTALWDAISNGQTWKGEFI-- 509 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + I ++ + + R +++ L ++ + Sbjct: 510 NKRKDGSEYVDFAII-TPIRQPNGGITHYVAVQEDITEKRHQGEELDQHRHHLEELVAS 567 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 21/202 (10%), Positives = 55/202 (27%), Gaps = 12/202 (5%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMP---QNGIEPEDVDTRINKRKMEIEVMQ 453 A + + E +L + + + + Sbjct: 122 EADERRARQSAETALRENQTAILEEQRQARLAALNLMEDALAARTRAETAHAALRDSEAK 181 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNH 511 + + +D I ++ +G + A ++ G+ E+ L P + + Sbjct: 182 YRLLADNAADCIFWVDIDGRYKYISPACEQISGHTPEEFLADPELMVNIIHLDDRMAYRQ 241 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567 + + + D E K+ + + K + + DI+ K+ Sbjct: 242 HFEDSTNTDR---GELEVRIMHKDGGVRWIGHHCKPIHDENGEYLGQHGANRDITARKRV 298 Query: 568 KNKLSHAKKIAEKESSHKSDFL 589 + +L + + S D Sbjct: 299 EQELHDSSERFRVASESIRDAF 320 >gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1135 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 107/618 (17%), Positives = 232/618 (37%), Gaps = 28/618 (4%) Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + + + + ++ P LR + + + L + + Sbjct: 212 RARSMMNDRIIGRDIGEAPMLVMARHQPAGFLRSVSVIDGI--SRLQSFRTLSSYPLIVS 269 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + + + L + +L+ E Sbjct: 270 AAFDEAAFLADTWRRQQIYLLAAAVCSACLIGLA--LLATRQTARLSTLARQLASSEARF 327 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + F+ L +++ + L+ + L P + Sbjct: 328 RDQAETASDWFWEMDAD-LRFSDFAGPLVPHIANDTLPTGLRREDVALREPGDAAKWDQH 386 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + R + + R + +++ P + G + + + Sbjct: 387 RQTMERREPFR---NFRYRVMTAAGLRYFSVSGRPIFGQDGG--FQGYRGSATDITEREL 441 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + ++ EA I I+ G + + NRA +LFGY +++ P T + Sbjct: 442 AANRLASSEARYRAMFEAVGQPIVTIDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMP 501 Query: 503 QNTPSVMNHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556 +V + L D + + + G K+ L + + + Sbjct: 502 SAVGAVHDGLLATYREGDGEGSIPRVGMRELTGRRKDGGEFPLEATLAGWREGDRRYVTG 561 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++ ++ + L AK+ A++ + K +FLA +SHEIRTP+ ++G +++ G Sbjct: 562 ALRDVTVQREIEASLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALALVE----G 617 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P N + + +RSGN +L I++D+LD+SK+E+GK + L + ++I L++ Sbjct: 618 PNLNDEQRQLLDVANRSGNALLQIIDDILDLSKLEAGKAEVEPVDFELRAVLRDSIDLLE 677 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + + + +P + ADLR ++Q+ +N++ NA+ FT GG + + + Sbjct: 678 PAACGRGLFLTQEVEPAVPDHVRADLRRIRQVLVNLVGNALKFTNRGG-VAVRVGLEGDA 736 Query: 736 ------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + V DTG+G+ + F Q +S R GTGLGL +++ +V Sbjct: 737 VADGSFLLRFEVADTGIGIPEEVQPTLFRRFTQADSSTTRRFGGTGLGLAISRELVTLMG 796 Query: 790 GKFYIFSTPAKGTLIEII 807 G + S KG+ Sbjct: 797 GTIGVASAEGKGSTFWFT 814 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 23/289 (7%), Positives = 66/289 (22%), Gaps = 17/289 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK-EISEELPKTIGNYAFKM 113 T Q + L S D + W +DA +P + Sbjct: 307 TRQTARLSTLARQLASSEARFRDQAETASDWFWEMDADLRFSDFAGPLVPHIANDTLPTG 366 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + + + ++R+ + Y + + PI+ ++ Sbjct: 367 LRREDVALREPGDAAKWDQHRQTMERREPFRNFRYRVMTAAGLRYFSV--SGRPIFGQDG 424 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS----------SVEKEKYD 223 F G+RG + ++ + E + + Sbjct: 425 GFQGYRGSAT--DITERELAANRLASSEARYRAMFEAVGQPIVTIDEHGTVDAFNRAAER 482 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 +F ++ ++ H + + S + + ++ Sbjct: 483 LFGYRAAEVVGGPMTRLMPSAVGAVHDGLLATYREGDGEGSIPRVGMRELTGRRKDGGEF 542 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + + ++ + E D+ Sbjct: 543 PLEATLAGWRE--GDRRYVTGALRDVTVQREIEASLRRAKEAADQANRA 589 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 36/337 (10%), Positives = 82/337 (24%), Gaps = 22/337 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID HG + + + G A +++G + + ++ + + + Sbjct: 467 IDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMPSAVGAVHDGLLATYREGDGEGSIPR 526 Query: 149 L-------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + +G + LA R R +G + V + A +R Sbjct: 527 VGMRELTGRRKDGGEFPLEATLAGWREGDR-RYVTGA-----LRDVTVQREIEASLRRAK 580 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + K + + + + +L + DV L Sbjct: 581 EAADQANRAKGEFLATMSHEIRTPMNGVLGALALV--EGPNLNDEQRQLLDVANRSGNAL 638 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-EN 320 L + L + + +S + E + L+ + + Sbjct: 639 LQIIDDIL-DLSKLEAGKAEVEPVDFELRAVLRDSIDLLEPAACGRGLFLTQEVEPAVPD 697 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + + L + N + + D + L A Sbjct: 698 HVRADLRRIRQVLVNLVGNALKFTNRGGVAVRVGLEGDAVADGSFLLRFEVADTGIGIPE 757 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 L+R A T + L + Sbjct: 758 EVQPTLFRRF-----TQADSSTTRRFGGTGLGLAISR 789 >gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1025 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 121/739 (16%), Positives = 258/739 (34%), Gaps = 35/739 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 TW ID + + S+ + + MI + + L + T G Sbjct: 152 TWEIDLQTGVVKWSDGMSRLHEMQPGGMID--IESAIVFYEASSRLVFKEALDKALTV-G 208 Query: 146 KTTLWPIEGTNLY---VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-- 200 + ++ + + + + + +R G++ + Sbjct: 209 EPYHIELQLLTAKGNLIWVRSSGSLMM-EKGKP--YRLCGVLQDITEQKQIEERNSVIFE 265 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 +HL + G + ++ L + S + + K +K Sbjct: 266 QSTDAHLLIDETGIIDCNNAAVQMLRCENKAHLLSCHPAIFSPEYQPDGQKSIDKAKKMD 325 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEG 318 L E+ + + ++ + + + + Sbjct: 326 SLAYEKGTHRFEWVHQRMDGKEIFVEVTLNAIAFNQKRVLLVVWHDITQRKKAEEKLKRN 385 Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E+L ET + G + + + + V AG + D Sbjct: 386 ESLLSETQALTHSGSWEIDLKTGR-NFWSAEAFRIFGLEPV----GAGPDTEEFDRMIHP 440 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D+ + ++ + + ++ L I E N G + Sbjct: 441 DDREKYINAIKQALKGGLTSNFDLRIILKTGELKYIQAI-GKPFYNDQGVATRLYGAIID 499 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + ++ QL + +E + IA+ ++E ++ + + + ++I+ Sbjct: 500 ITKYKKAEEAILMKQAQLNTFIEVSPAPIAVFDKEMRYIAASDLWKQDYKLERKNIIGVC 559 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554 + + ++ ++ E + + I Sbjct: 560 HYDLFPEASLH-WRQIHERGMAGEILSNTEDSFVRKNGRTQWFRWEIRPWFETDKEIGGI 618 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + I++ K + L AK+ AE +S K+ FL+ +SHEIRTP+ A+IGF+ ++ Sbjct: 619 IMFTEIITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLLLQNP 678 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +EY + SG +L ++ND+LD SKIE+GK+ +L + V + Sbjct: 679 -----REDQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAA 733 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +Q A EK I ++ ++P+ ++ D + QI N++SNA+ FT G ++++S + S Sbjct: 734 MQQRAIEKGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSVG-KVVVSASLVS 792 Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V V+DTG+G+ + + + F Q + + GTGLGL + K +++ Sbjct: 793 RNNEYTIVSFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQG 852 Query: 790 GKFYIFSTPAKGTLIEIIF 808 + S P KG+ Sbjct: 853 SAIQLDSEPGKGSTFSFNL 871 >gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8] gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8] Length = 936 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 131/749 (17%), Positives = 254/749 (33%), Gaps = 53/749 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIG----DLLKRQ 140 +D G + + + + + + + G ++ D +L+ Sbjct: 208 RLDQEGTFVQANGRVAEVLKSSEDDICGRTYAELEWTLTPFGADTMPEEAVPFDHVLETG 267 Query: 141 NTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + WP +GT + + + P+ + + G + + Sbjct: 268 ASVRDVELSVQWP-DGTQRVLSV--SGAPLQAE-GKGPGA--VFHLRDITDRVRREQTLR 321 Query: 199 RLDKKFSHLHEIKKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 R+ +++ L + E ++ + Q + V T + D++ + Sbjct: 322 RVKERYQTLVDNFPDGGVFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAR 381 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 +L ++ + + ++ + + L+ + Sbjct: 382 EHVTYF----RRALDGEKHVYEQEYQGQHYRVQTLPIRGKAGDVISGLAVSQDITERKER 437 Query: 316 DEGENLTPETVDKCPIPFFVYS--------HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + F+ NP + + + Sbjct: 438 ERRLRQSETLFQNAQDALFLLDVKEEEEAWAFRYRRVNPVYEEQFGHAEAEIRGR----- 492 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 +P+ + +M+ + R ARL+ + E Sbjct: 493 ----SPREVFGGDARRLMMEKCRRCVQHREARLYEETISLEGRETYWKTRIAPVLVEGRV 548 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 GI + + + +E + E S G + + + ++ GY Sbjct: 549 RQIVGITRDVTEQHRRQEALERQNDLFDRAQEIASVGAWEYDARADASNWTKKAYEILGY 608 Query: 488 PVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P + D + + L + L LE +++ RI + Sbjct: 609 PPDADPNPSTAVGYYHPEDQPRVQKALRDALQEGKPSDLEVRV---AAGDEVRWARIRGE 665 Query: 547 KLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + DI+E KQ + L AK+ AE+ S KS LA +SHEIRTPLT+I Sbjct: 666 PQWEDGEVVRIRGTIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSI 725 Query: 604 IGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IGF+E + + + +YA I++SG +L+ + +L++SK+E+G+M L P Sbjct: 726 IGFAEATNAEAKELDLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARP 785 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA-LNILSNAIHFTP 720 V L E ++ A EK + ++ AD V QI N+LSNA+ +T Sbjct: 786 VDLVEEAEAVAEELRPRAEEKEVSLQLETEAA--WAEADKGGV-QILARNLLSNAVKYTE 842 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +GG++ + T + V V DTG+GM E +PF Q +GTG+GL + Sbjct: 843 AGGRVRLRT-YREEGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAV 901 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K G + + +GT I + P Sbjct: 902 TKETTKQMEGSIDVETEKGEGTRITVWLP 930 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 10/180 (5%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + P K + + + + + L ++E + I + Sbjct: 150 TAGGLFLTPAPKLQPPVVLAIMVVVGLTVSVSLRGRMTIRRQRDLLDRLVETSPGAIVRL 209 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLR 522 ++EG + N V+++ +DI + + +T +L Sbjct: 210 DQEGTFVQANGRVAEVLKSSEDDICGRTYAELEWTLTPFGADTMPEEAVPFDHVLETG-A 268 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + L + L + DI++ + + L K+ + Sbjct: 269 SVRDVELSVQWPDGTQRVLSVSGAPLQAEGKGPGAVFHLRDITDRVRREQTLRRVKERYQ 328 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 42/469 (8%), Positives = 112/469 (23%), Gaps = 39/469 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144 + + + ++ G + G D+ + L + Y Sbjct: 339 VFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDGEKHVY 398 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + G + V LPI + + G + + ++ + F Sbjct: 399 EQEYQ----GQHYRVQT----LPIRGKAGDVI--SGLAVSQDITERKERERRLRQSETLF 448 Query: 205 SHLHEIKKGHSSVEKEKY------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + E+E+ + D + Sbjct: 449 QNAQDALFLLDVKEEEEAWAFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMME 508 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + E+ ++ + K + + + + E Sbjct: 509 KCRRCVQHREARLYEETISLEGRETYWKTRIAPVLVE-GRVRQIVGITRDVTEQHRRQEA 567 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKL 375 + D+ + S G Y + K+ + + + Sbjct: 568 LERQNDLFDRAQE---IASVGAWEYDARADASNWTKKAYEILGYPPDADPNPSTAVGYYH 624 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ L + + + + + + + E + G Sbjct: 625 PEDQPRVQKALRDALQEGKPSDLEVRVA--AGDEVRWARIRGEPQW-EDGEVVRIRGTIQ 681 Query: 436 EDVDTRINKRKMEIEVMQLC-------SILEATSDGIA--IINREGIILSTNRAVSKLFG 486 + + + +R + + S+L S I + + G +TN +L Sbjct: 682 DITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKEL-- 739 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + D P L + + + L +L+L + E + Sbjct: 740 -DLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVD 787 >gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4] gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4] Length = 1230 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 121/594 (20%), Positives = 204/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPAKITQGWEPWFQLVSRIFEENQQY------TRHLAEQNRR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350 L N E L Y L +D P F G N S Sbjct: 435 LDNLVARRTERLKETTERREREYA-----LLRSLLDSIPEAIIFKDKEGKYLGCNKSAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I T + + + R Sbjct: 490 MLGYTESEMIGQDSQTMTSNEQSMRIRAEDERVLSERTPLRYQEKVEL--------AGKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + + Y + L+ + + Sbjct: 602 DSEQII--CNPAYYSMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPI-GAYD 658 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + T DI+ K + L AK+ AE Sbjct: 659 VEFRMRGKSGMYHWVLSRGRVVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + P + +Y + S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTP----QQADYLDKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L LD+ + A+ L L A EK + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + E Sbjct: 835 PLRLGQVLINMLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQE 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q S + GTGLGL ++K +V G + S G+ Sbjct: 892 SLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTI 945 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 44/347 (12%), Positives = 96/347 (27%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 NP L S+ +G +Q+ K KI G+E + +EN + + Sbjct: 380 NPASRLLSHLEGCSQEPRKPPAKITQGWEPWFQLVSRIFEENQQYTRHLAEQNRRLDNLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKETTERREREYALLRSLLDSIPEAIIFK-DKEGKYLGCNKSAERMLGYTESEM 498 Query: 114 IGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG S+ + +L + + +E V +D LP Y+R Sbjct: 499 IGQDSQTMTSNEQSMRIRAEDERVLSERTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELLGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K+ + S + H DD ++ ++Y L + + + + Sbjct: 614 SMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPIGAYDVEFRMRGKSGMYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + + + + + + + + Sbjct: 674 LSRGRVVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANL 720 >gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1313 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 142/765 (18%), Positives = 271/765 (35%), Gaps = 61/765 (7%) Query: 79 IPRTVRFTWNIDAH-------GY-----LKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 T W +DA G + ++ EL + +S Sbjct: 284 GALTAEAVWEVDAGSQWQDSSGRLGILSIAVLNPELRTIWVYPREE----NATAISLDHA 339 Query: 127 IDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 +DP R + TT G + + PI R SG+ + Sbjct: 340 MDPVRQAAIAAARINRGPVISGTTELGGRGHGVVI-----YAPI-IRQGVASGYVAAEFL 393 Query: 185 HV---NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 + + V + + L + E + +++++D P + +V+ Sbjct: 394 YRTFFSSVIAERKIEDGHLVEVKIGAEEAYRTVLQPKEQRHDALLIDKTYPMFDRRVRVT 453 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 A ++D + L +L H + + Sbjct: 454 MTPRTEALQNDRRYLPELALGAGIGIALLLGLSVHLARGARAGQHAA------ELSNKKL 507 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 + + + A + +D I F ++ Y + + Y+ Sbjct: 508 HAENEERRRIEARLKVSDERLRLALDSTQIGIFEWNVAAGHVYYSSGLWAMLGYEHSRMS 567 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 +L+ L L + E T Sbjct: 568 ATVAAWQSLIHPDDLPTYRRRVDSQL---NGVASFIEPEFRVKSHGGEWRWVYTRSKTVA 624 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--SILEATSD-GIAIINREGIILST 477 A+ G + R ++ + + S++ A +D + II+ G I Sbjct: 625 ASTSGRPTRIIGTVQDITARREAEQALRESQAETRKLSLVAAKTDNPVLIISPAGSIEWV 684 Query: 478 NRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N + S++ Y +++++ + P T + + ++ + + + +K Sbjct: 685 NESFSRVMEYSLDEVVGRSPIDFVAAAETDARTLQEIDAAIAQGRAHSGD--VVTHSKRG 742 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + LR+ ++ + + + + DI+ + L AK A++ S KSDFLA + Sbjct: 743 RKYHLRVELQPVRNDAGQLQNFIVIETDITARVDTELALRRAKTEADEASRAKSDFLASM 802 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ +IG + ++ P ++ N I SG +L I+ND+LD SKIES Sbjct: 803 SHEIRTPMNGVIGMTSLLMETDLSP----EQRDFVNTIRTSGEALLTIINDILDFSKIES 858 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711 GKM+L P L + E++ L L A+ K + + A ++P I+ D+ ++QI +N+ Sbjct: 859 GKMDLEHLPFELATCLEESLDLFALQASAKHLELAYHIAPDVPEWIIGDITRLRQIVVNL 918 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQI 763 ++NA+ FT +G I I + VRDTG+G+ L++ K F Q+ Sbjct: 919 VNNAVKFTSAGS-IAIEVRRRPPTVPANLKRFPLEFVVRDTGIGIPAERLDRLFKAFSQV 977 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +S + GTGLGL + + + G + S +G+ Sbjct: 978 DSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKVGEGSSFIFTI 1022 >gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1106 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 123/710 (17%), Positives = 247/710 (34%), Gaps = 89/710 (12%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + L K ++ L G + + F L ++ T Sbjct: 177 KREEEQLRKSEERWQLALRGSNDGIWDWNVQTNESFYSPRWKEMLGYEDHEIGNTLDEWS 236 Query: 250 KDDVLKTEKYPLLTSEE------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + L E+ + + N L + + E+ + Sbjct: 237 ERVHPEDLPPTLAAIEDHIKRKTTYFTFEFRMRCKNGEYKWILSRGQALFDENGEAVRFA 296 Query: 304 SHRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNLFYAN--------------- 345 S +E + + F + Sbjct: 297 GSHADISDRKRAEEALEYRAQKDNLLSRISEQFLNQDTDTAIHLTLEATGEFMDCDRVYV 356 Query: 346 ---------------------PSFLLLTKYKSVDDI---------EIAGGLSTLLDAPKL 375 PSF+ + ++ +S++ P Sbjct: 357 FRYTDNHTKLTQTHEWCALNVPSFIQDYQGVPIEVFPWFVQTILKGKPFQVSSITQLPDE 416 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 ++ + L + + Q L P + + + G Sbjct: 417 AEAEKAELKRLTTQSLLILPMQLTGADVNQNVGFIGLDNVRSPRVWTQEDINLVQRVGAL 476 Query: 435 PEDVDTR-INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + +R + + IL+ + I I+ I N+ K+FGY ++L Sbjct: 477 IAIAQAKNEAERALRDSEARFAGILDNADEAIISIDETQHITLFNQGAEKIFGYSQAEVL 536 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLP- 549 + + L + ++ + L G ++ + + I KL Sbjct: 537 GQALDILLPLRFVDAHHQHIQDFTQAPLSARKMSERNTVFGRRRDGEEFPIEASISKLEL 596 Query: 550 -FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 Y+ + DI++ K+ + +L AK A+ S KS+FLA +SHE+RTPL I+G+++ Sbjct: 597 GNKRIYTAFVRDITKRKRAEEELKRAKAAADSASRAKSEFLANMSHELRTPLNGILGYAQ 656 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ + P+ + I + G+ +L ++ND+LD+SKIE+ K+ LH + Sbjct: 657 ILQRDKNIT---PQQRKGLGVIKQCGSHLLTLINDILDLSKIEAQKLELHPTDFDFLTFL 713 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + ++ A +K I + ++P+ + AD + V+Q+ +N++SNAI FT +G +I Sbjct: 714 CGVSEICRVRAEQKNISFTYQTSQHLPKSLHADEKRVRQVLINLISNAIKFTDTG-CVIF 772 Query: 728 STTHTSNEE----------------------VILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +T N + V+DTG+G+ + ++EK PF Q+ Sbjct: 773 TTELIENGMAKVCDVGHPDQCFTPPQCATHKIRFLVQDTGIGIPSEQIEKIFIPFEQV-G 831 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + EGTGLGL + + +V + S KG+ + L+++S Sbjct: 832 DRFRKAEGTGLGLAITQKIVSMMGSTLNVESVVGKGSKFWVDLDLHESSE 881 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 48/448 (10%), Positives = 99/448 (22%), Gaps = 89/448 (19%) Query: 96 KEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPN-NHIGDLLKRQNT-WYGKTTLW 150 S + +G IG + + P I D +KR+ T + + + Sbjct: 211 SFYSPRWKEMLGYE-DHEIGNTLDEWSERVHPEDLPPTLAAIEDHIKRKTTYFTFEFRMR 269 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G Y I ++ N E F G + +K + L I Sbjct: 270 CKNGE--YKWILSRGQALFDENGEAVRFAGSHA--DISDRKRAEEALEYRAQKDNLLSRI 325 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK------------ 258 + + + + + ++V H E Sbjct: 326 SEQFLNQDTDTAIHLTL-EATGEFMDCDRVYVFRYTDNHTKLTQTHEWCALNVPSFIQDY 384 Query: 259 ------------------YPLLTSEESSLPEQEDFHTINLNQYT------KKQYFGTLQN 294 P S + LP++ + L + T Sbjct: 385 QGVPIEVFPWFVQTILKGKPFQVSSITQLPDEAEAEKAELKRLTTQSLLILPMQLTGADV 444 Query: 295 NSKESFEYLSHRNHPSLSAYFD-------------------------EGENLTPETVDKC 329 N F L + P + D + E +D Sbjct: 445 NQNVGFIGLDNVRSPRVWTQEDINLVQRVGALIAIAQAKNEAERALRDSEARFAGILDNA 504 Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---------------DAP 373 + ++ N + Y + + A + L Sbjct: 505 DEAIISIDETQHITLFNQGAEKIFGYSQAEVLGQALDILLPLRFVDAHHQHIQDFTQAPL 564 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + V R D A + ++ + K + E + + Sbjct: 565 SARKMSERNTVFGRRRDGEEFPIEASISKLELGNKRIYTAFVRDITKRKRAEEELKRAKA 624 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT 461 + ++ + +L + L Sbjct: 625 AADSASRAKSEF-LANMSHELRTPLNGI 651 Score = 39.6 bits (91), Expect = 2.2, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 12/143 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLKRQNT 142 ID ++ ++ K G +++G L + + +D + L R+ + Sbjct: 511 IDETQHITLFNQGAEKIFGYSQAEVLGQALDILLPLRFVDAHHQHIQDFTQAPLSARKMS 570 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G + ++ L + + F V KR Sbjct: 571 ERNTVFGRRRDGEEFPIEASISKLEL----GNKRIYTAF--VRDITKRKRAEEELKRAKA 624 Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 625 AADSASRAKSEFLANMSHELRTP 647 >gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1364 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 130/706 (18%), Positives = 256/706 (36%), Gaps = 65/706 (9%) Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + P+ + SG+R GF ++ P+ +++ Sbjct: 185 SGAPVMTSPISLSGYRVPNESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ D+ + + A + V++ T ++ P Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N + + + L N + L Sbjct: 305 FVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + + NP+ + Y + + I+ L+TLL + + +D Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTTLLSPQPYAMSEVD------HADAAL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 ++ T++ + + + + + D + ++ Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A KL GY +++ + Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGR 536 Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + F+E H L E + TLE + + + L + Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+GLGL +++ +V+ G+ + S P +G+ + L +S P Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSSPPQ 877 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G G+G +H RV A + + ++ + + E+Y + + Sbjct: 99 RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S + + L + Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGAPVMTSPISLSGYRVPNESGFLVLLAVYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + +VY+ ++ S Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++D + + + ++A++P ++ + R I + Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDG 464 + M + + + + + ++ + M+L +++ +S+ Sbjct: 303 AGFVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I N A +FGY ++ + + T L + + Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSP--QPYAMSEVDHADAALAGNA 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T+ ++ + + + S DIS+ + ++ E Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479 Query: 581 ESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 68/283 (24%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138 D+ G++ + K +G A ++IG R L + + +L + L+ Sbjct: 509 TDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 32/375 (8%), Positives = 81/375 (21%), Gaps = 12/375 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + G A + I L + + T+ Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMR 427 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G ++ + + PI SG F L+ H ++ Sbjct: 428 HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + S + K + + + + + + L + + Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E +Q + + + S + + + + Sbjct: 542 FVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 H + + LT+ K + + SD A + Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + L + + I + + + +E Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715 Query: 451 VMQLCSILEATSDGI 465 L + + +D + Sbjct: 716 PFDLNQLFDNIADLM 730 >gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 969 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 124/667 (18%), Positives = 235/667 (35%), Gaps = 30/667 (4%) Query: 164 AALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 + LP+ R G F G + + L ++ S +G + Sbjct: 160 SVLPLSRRLNNPDGSFAGVVMAALEPDYFAQFYATLGLGERGSIGLWSTEGQLLSRQPAA 219 Query: 223 DIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 I SQ S P + ++ SS D ++ + +L + Sbjct: 220 PIESQSKDYSATPLFQNLHQASSGVYDEPAAVDGVERIVAYERLVKYPALTVSAAIARDD 279 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSH--------RNHPSLSAYFDEGENLTPETVDKCPI 331 +++ S + + R + A +L T++ Sbjct: 280 ALAPWRREAVIQAGAISTVALALVGLGVGLGRRDRRVRAAEAEARASADLLAVTLENMDQ 339 Query: 332 P-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 V + + N L L + + + ++ Sbjct: 340 GLMMVDADDRVQVCNRRALELLDLPAAFMAQKPTFTAVRNYQLAQNEFVRSDDAFRAWVA 399 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 R + + + L + +P + ++ Sbjct: 400 RAGLEPKEHTYERERPNGTVLEIRTVPLAGG-------GAVRTYTDITARHGAEQARRES 452 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + + + SD I + + +G + AV + GY VE+ R +L + Sbjct: 453 EARYRLLADNVSDLIVLGHADGRRSYISPAVHAMLGYTVEEAHRIGMREWLHPEDLGRVF 512 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEK 568 T + ++ + K + + +++ + ++ + D++E +++ Sbjct: 513 ATTTSLSPERPTASV--VYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAIRDVTERVRQE 570 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK AE + K++FLA +SHE+RTPLT ++G +++ + Sbjct: 571 RRLEQAKVAAEAGARVKAEFLANMSHELRTPLTGMLGVHDLLAGD---TSLSAAQRHLIG 627 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +G +L IVND+LD SKIE+G+M + P SL V LV A K + + Sbjct: 628 LAQEAGRSLLAIVNDILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVA 687 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGV 746 ++P + D ++QI LN+ SNA+ FTP G +I + + V + V DTG+ Sbjct: 688 EIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQG-EIALRVRSAAGTGRVRVEVTDTGI 746 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + F Q S + GTGLGL + K +V+ G + S P +G+ Sbjct: 747 GIPADKLPLLFERFSQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVESIPGQGSTFWF 806 Query: 807 IFPLYDT 813 PL Sbjct: 807 ELPLASA 813 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 63/234 (26%), Gaps = 10/234 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G IS + +G + + + + + L + Sbjct: 472 ADGRRSYISPAVHAMLGYTVEEAHRIGMREWLHPEDLGRVFATTTSLSPERPTASVVYRL 531 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + V + + E + I+ R + +RL++ + + Sbjct: 532 RHKAGHY-VWAEAVFQRVED-AGEVT------IITAIRDVTERVRQERRLEQ--AKVAAE 581 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 E ++P + + + + + L S + + Sbjct: 582 AGARVKAEFLANMSHELRTPLTGMLGVHDLLAGDTSLSAAQRHLIGLAQEAGRSLLAIVN 641 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + DF I Q ++ +L+ + E ++ E E P+ Sbjct: 642 DILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVAEIEGDVPD 695 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 16/243 (6%), Positives = 52/243 (21%), Gaps = 11/243 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA ++ + + + A + + + + N W + Sbjct: 344 VDADDRVQVCNRRALELLDLPAA-FMAQKPTFTAVRNYQLAQNEFVRSDDAFRAWVARAG 402 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L P E T + L I + +G + + + ++ L Sbjct: 403 LEPKEHTYERERPNGTVLEIRTVP--LAGGGAVRTYTDITARHGAEQARRESEARYRLLA 460 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + +++ + + L Sbjct: 461 DNVSDLIVLGHADGRRSYISPAVHAMLGYTVEEAHRIGMREWLHPEDLGRVFATTTSLSP 520 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFDEGENL 321 E + + + F +++ ++ + Sbjct: 521 -ERPTASVVYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAIRDVTERVRQERRLEQAKVA 579 Query: 322 TPE 324 Sbjct: 580 AEA 582 >gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1206 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 104/509 (20%), Positives = 212/509 (41%), Gaps = 27/509 (5%) Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E+ ++ + + G + N + + + + + I + L+ +P Sbjct: 320 LQKSESRLRAIIETAADAIVMIDTRGIIQEFNVTAERMFGWTAKEIIGKNVKI--LMPSP 377 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 +++ L + I ++ + + P+N G+ Sbjct: 378 FREEHDGYLSNYLTTGEAKIIGIGRETIALRKDGTTF---PIRLAIGHTKLPQNDIFVGL 434 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVE 490 + + + + ++ QL S ++ G+ +I+ + + A+ ++ GYP + Sbjct: 435 ISDISERILIEHALKDNEEQLRSFIQNIP-GVVYRCLIDEYWSSVFLSDAIFQISGYPSK 493 Query: 491 DILR----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 D L + F+ + + +++ + + L + K ++ + Sbjct: 494 DFLEPNRIRNFSDIIHPDDREHVSNIIQNAIDTSDTFVLNYRIV--HKNGEIRWVLEYGG 551 Query: 547 KLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + D ++ + + L +K+ AE S KS FLA +SHEIRTP+ A Sbjct: 552 PVYDENNEVKFLDGVILDNTDRRMIEEALIESKEKAEMASITKSTFLANMSHEIRTPMNA 611 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGF+EV+ + + ++ I S +L ++ND+L+ +K++ G + L Sbjct: 612 IIGFTEVLLSDP----NPNQNKKHLETIRNSAKSLLRLLNDVLNSAKLDRGALELESVDF 667 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 SL V + S + A K + T ++N + D ++QI N++ NAI FT Sbjct: 668 SLISLVDQVSSTFIMEAKRKGLEFLTHYSNELEDYYRGDSLRIRQILTNLIGNAIKFTKQ 727 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G +I + T +V+ ++DTG+G+ +EK +PF Q S + GTGLG ++ Sbjct: 728 G-KIELFITP-HKGQVLFHIQDTGIGIAEDRMEKIFEPFTQADVSMSRKFGGTGLGTTIS 785 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +V+ GK ++ S GT PL Sbjct: 786 KQLVELMGGKIWLESKLGVGTNFYFSLPL 814 >gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS] gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS] Length = 681 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 106/577 (18%), Positives = 230/577 (39%), Gaps = 43/577 (7%) Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + +N ++ +++ E+ S + ++ + Sbjct: 13 PNIEQQSHEHQVFDVNGKIAWQRWTNRAIRDEHGSVVEFQSVGIDITERKLAEKALRKSE 72 Query: 324 ETVDKC----PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E + + + Y +P F + + + + + + + Sbjct: 73 ERFELAMRGASDGLWDINYETEKAYYSPRFKQMLGFSEHESMTPDDII------HWVHPD 126 Query: 379 NAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + K ++ ++ I ++ + + + + N+ + + G + Sbjct: 127 DFDKVLLNSKAYVEKKIPKFQHTFRLRHKKGHYIWVLSRAIAVWNEQGQPLRMVGTNMDL 186 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRK 495 + + K+ + L ++++ I +R L N+ +++ P + I + Sbjct: 187 TIQKQIEEKLRQQQEFLRLVIDSIPQFIFWKDRNSRYLGCNQNFAQIANVNTPKQIIDKT 246 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 F + + + ++ D + T+ + + L L Sbjct: 247 DFDLPWTAEQITYYRNVDRRVMEGDTPEYHIIETI-QLADGQQRWLDTNKIPLHNVQGQV 305 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+E KQ + +L A + AE + KS FLA +SHE+RTPL A++G++++ + Sbjct: 306 IGILGSFEDITERKQAEVQLQKALQTAETANHTKSVFLANMSHELRTPLNAVLGYTQIFQ 365 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N + E + I R+G +L ++ND+LDISK+E+G++ + + + L + + Sbjct: 366 QDD---TLNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEFYPKDMKLSQFLQGI 422 Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + L Q+ +K+I + +P I AD + ++QI +N+LSNAI FT G + + Sbjct: 423 VQLFQMRTQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAIKFTDKGS-VTFTVK 481 Query: 731 HTSNE-------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + + ++ DTG+G+ ++EL+K PF Q + + Sbjct: 482 TEQAKIKNEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFLPFQQADKNHYNKP 541 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +VD G ++ S KG++ + F Sbjct: 542 MGTGLGLSITKNLVDMMDGSIHVESLLGKGSIFWVEF 578 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 60/208 (28%), Gaps = 6/208 (2%) Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 SD I + H + + ++ + + + + ++ ++ Sbjct: 8 ALSDNPNIEQQSHEHQVFDVNGKIAWQRWTNRAIRDEHGSVVEFQSVGIDITERKLAEKA 67 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNT 505 + + + SDG+ IN E + ++ G+ + + ++ + Sbjct: 68 LRKSEERFELAMRGASDGLWDINYETEKAYYSPRFKQMLGFSEHESMTPDDIIHWVHPDD 127 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561 + + + + + K+ + + + T D+ Sbjct: 128 FDKVLLNSKAYVEKKIPK-FQHTFRLRHKKGHYIWVLSRAIAVWNEQGQPLRMVGTNMDL 186 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + KQ + KL ++ F+ Sbjct: 187 TIQKQIEEKLRQQQEFLRLVIDSIPQFI 214 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 30/319 (9%), Positives = 81/319 (25%), Gaps = 30/319 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-----GDLLKRQ 140 W+I+ S + +G + M D+ +H D + + + K+ Sbjct: 86 LWDINYETEKAYYSPRFKQMLGFSEHES--MTPDDIIHWVHPDDFDKVLLNSKAYVEKKI 143 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + L +G Y+ + A+ +++ + R G + ++ Sbjct: 144 PKFQHTFRLRHKKGH--YIWVLSRAIAVWNEQGQP--LRMVGTNMDLTIQKQIEEKLRQQ 199 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKT- 256 + + + + + ++ T++ T Sbjct: 200 QEFLRLVIDSIPQFIFWKDRNSRYLGCNQNFAQIANVNTPKQIIDKTDFDLPWTAEQITY 259 Query: 257 ---EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 ++ + E + Q L N + L + Sbjct: 260 YRNVDRRVMEGDTPEYHIIETIQLADGQQRWLDTNKIPLHNVQGQVIGILGSFEDITERK 319 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + +T + ++F AN S L T + G + + Sbjct: 320 QAEVQLQKALQTAETAN------HTKSVFLANMSHELRTP------LNAVLGYTQIFQQD 367 Query: 374 KLSDNNAIKPVMLYRSDRT 392 + + + + + Sbjct: 368 DTLNKQQREGIDIIHRNGE 386 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 17/181 (9%), Positives = 49/181 (27%), Gaps = 5/181 (2%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDV-SDILHIDPNNHIGDLLKRQNT 142 F + D + ++ + K +I D+ I ++ + +T Sbjct: 213 FIFWKDRNSRYLGCNQNFAQIANVNTPKQIIDKTDFDLPWTAEQITYYRNVDRRVMEGDT 272 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +D +P+++ + G G ++ + Sbjct: 273 PEYHIIETIQLADGQQRWLDTNKIPLHNVQGQVIGILG--SFEDITERKQAEVQLQKALQ 330 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + K + + + + ++ + +L + D++ LL Sbjct: 331 TAETANHTKSVFLANMSHELRT-PLNAVLGYTQIFQQDDTLNKQQREGIDIIHRNGEYLL 389 Query: 263 T 263 T Sbjct: 390 T 390 >gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1236 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 123/594 (20%), Positives = 205/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N + + GY + L + + Y + L + E Sbjct: 602 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDA-YE 658 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + T DI+ K + L AK+ AE Sbjct: 659 IEFRILGKNGSYHWVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + E Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I S Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 613 Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + H DD ++ E+Y L + + + N + + Sbjct: 614 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNGSYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + + + + + + + Sbjct: 674 LSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1253 Score = 368 bits (944), Expect = 3e-99, Method: Composition-based stats. Identities = 119/748 (15%), Positives = 238/748 (31%), Gaps = 85/748 (11%) Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY----------- 169 ++D + + LL + EG + +D + P+Y Sbjct: 79 LADERTAQQGDALATLLDSR------LKQLRAEGFSALHFVDASRQPLYSFRLRSSGPFQ 132 Query: 170 -----SRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLHEIKKGHSSVEKEKY 222 E G ++ D A L L+ + +G + Sbjct: 133 VMVGDDSAGEVRAVPGALLIFFGARDASAPAIMLELPLESVSRGMESFYRGSFAFTPPLA 192 Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 ++ + + S++T +D + E+ + F Sbjct: 193 EVHEVSETALCQTLPPEASAITGKRKMRDFLRSIERQ---MGNQRPFATSVRFGQKRYTY 249 Query: 283 YTKKQYFGTLQN-------------------------NSKESFEYLSHRNHPSLSAYFDE 317 + + L++ + + Sbjct: 250 TFLPVHLAQSPDFLFHYEDDVYVMEYYHNYYLLVFLFTLIAFTVVLANFSRVRSLYTLRQ 309 Query: 318 GENLTPE-------TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + T D + + Y N + LL + + Sbjct: 310 QRDELARVGGLLKGTTDSMVEGLLMIDGSRRITYCNRAATLLLHATEQELLGRTP--DAF 367 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + + + + +++I + + Sbjct: 368 FFHASSPWEVPQEIFCVADAVSDESMGTECEALVISDGGQRRYVSYITTPLQDGAGISGG 427 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + + + + L T I I N GII N+A GY Sbjct: 428 HVMVFRDISQQKDD----QERIRLLTEAFVQTDSMILITNHRGIIEYANQAFFAQTGYDR 483 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E+++ K + + + ++S E K + + + + Sbjct: 484 EEVIGKS-----PRFPSPSVESEIWSVISAGQTWRGEME--SRKKNGESYWTSMSVTPIK 536 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + Y D++E K ++ L AK +AE+ S KS FLA +SHEIRTP+ I+G Sbjct: 537 DTHGHVTHYVTVEEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTPMNGILG 596 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+ Y S +L I+ND+LD SK+E+G++ L Sbjct: 597 MTELALQTELSTT----QRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQTSFDPV 652 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ 724 E V + + A K I + + + ++ D ++QI N+L NA+ FT +G Sbjct: 653 ETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFTDTGHV 712 Query: 725 ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + S + RV DTG+G+ +++ + F Q+ S + + GTGLGL + Sbjct: 713 LLDVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGTGLGLAIT 772 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +V G+ ++ S +G+ + P Sbjct: 773 RKLVHLMNGRIWVESHMGEGSTFHFVIP 800 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 48/483 (9%), Positives = 115/483 (23%), Gaps = 57/483 (11%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G ++ ++ G ++IG + I ++ TW G+ Sbjct: 466 GIIEYANQAFFAQTGYDREEVIGKSPR----FPSPSVESEIWSVISAGQTWRGEMESRKK 521 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G + ++ PI + + + + + K Sbjct: 522 NGESY--WTSMSVTPIKDTHGHVTHY--VTVEEDMTERKAMEDALREAKNVAEEASRAKS 577 Query: 213 GHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + I + + L +L + Sbjct: 578 IFLANMSHEIRTPMNGILGMTELALQTELSTTQRRYLTIAHNSAKSLLVIINDVLDFSKV 637 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E T T + ++ ++ L + LS Y + ++ Sbjct: 638 EAGEIRLEQTSFDPVETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILN 697 Query: 328 K-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-----------AGGLSTLL----- 370 G++ + + + A + ++ Sbjct: 698 NLLGNAVKFTDTGHVLL----DVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQ 753 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + L + + + R+ E S IPF K ++ P+ Sbjct: 754 VEASDRRKFGGTGLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVIPFRKGDRLPDIPFD 813 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGYPV 489 E + EI L ILE G+ I+ + + + Sbjct: 814 ISAEQAARTRILVADDSEINRRILVEILERRQLGVVEAIDGDD--------ARQKLQQAM 865 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++ +PF + + L + L + K + L + ++ + Sbjct: 866 DE--GRPFDMLI-----------LDHFMPGIRGVDLAREL-HQHKGHRNLPILLLPSSMD 911 Query: 550 FSS 552 Sbjct: 912 SDD 914 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 23/271 (8%), Positives = 69/271 (25%), Gaps = 19/271 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + + + +++G D P ++ + ++ Sbjct: 335 IDGSRRITYCNRAATLLLHATEQELLGRTP-DAFFFHASSPWEVPQEIFCVADAVSDESM 393 Query: 149 -----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 I + P+ G + D + + L + Sbjct: 394 GTECEALVISDGGQRRYVSYITTPLQDGAGISGGH--VMVFRDISQQKDDQERIRLLTEA 451 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 F + + I ++ + + +++E + +++ Sbjct: 452 FVQT----DSMILITNHRGIIEYANQAFFAQTGYDREEVIGKSPRFPSPSVESEIWSVIS 507 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + ++ E E N Y +++ Y++ + ++ Sbjct: 508 AGQTWRGEME-SRKKNGESYWTSMSVTPIKDTHGHVTHYVTVEEDMTERKAMEDALREAK 566 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 ++ ++F AN S + T Sbjct: 567 NVAEEAS------RAKSIFLANMSHEIRTPM 591 >gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 585 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 177/368 (48%), Gaps = 26/368 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E+E +L +++E G+ +I+ G I NRA + F D L +P+T Sbjct: 235 KAREMETDRLHTLIENVGIGLILIDSRGYINLINRAFKESFHIHPVDYLYRPYTEAFAHK 294 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 + + + + +R+ L L + K + L HDI+ Sbjct: 295 EIVQLVNEIF-MKETKIRKQL---LLTIGIDRKHFEVYGAPIIGTNDEWKGIVLVFHDIT 350 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + + DF+A VSHE++TP+T+I GF+E + + G + + + Sbjct: 351 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFAETLLD---GAMKDEQ 393 Query: 623 YIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +EY + I + + +V DLLD+SKIE LH E V L + + E + Q + E Sbjct: 394 TLEYFLSIIWKESERLQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAVMFQQKSEE 453 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I ++ + D +KQI +N+++NA+ +TP GG++ + +E+++ V Sbjct: 454 KGIDFYLHAPKSV-YMEGDANRIKQIFINLITNALTYTPKGGKVELMIE-EKEKEILVHV 511 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + ST KG Sbjct: 512 KDTGIGIDEQEIPRIFERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHITVKSTVGKG 571 Query: 802 TLIEIIFP 809 T + FP Sbjct: 572 TTFTVHFP 579 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 114/677 (16%), Positives = 237/677 (35%), Gaps = 70/677 (10%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSSLT 244 P A + L+ + + ++ + + + Sbjct: 695 DAEKSIHPVAQAGYEEGYLQSLNLTWADTVRGQGPTGTAIRTGKTAIIQNILTDPRFEIW 754 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A+ + PL+ + ++ N + + L + L Sbjct: 755 RCQANNRGYASSISLPLMNNGQAFGALNIYAAEANAFDSDEVKLLEELTADVAYGIVALR 814 Query: 305 -HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 R+ A E + T++ + + ++ N + L +S Sbjct: 815 NRRDRQIAEAALRESQERLSLTLEAVNLGIWDWNITTNQIIWSEGHARLFGIES----GK 870 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G A ++ ++ + + S I + N + N Sbjct: 871 FDGTYEAFQACIYPEDRGGLAEVINSARQQKTDYSHEFRIISPDG-NIHWIEGTGKLYYN 929 Query: 423 QFPENMPQNGIEPEDV---------------------------------------DTRIN 443 + E + GI + + + Sbjct: 930 EMGEAVRMLGIVRDITSRKQIEATLQKINNELELRVAERTAELVNVNRQLQSELDERQRI 989 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + I ++L IL+ D I IN I N+ K+FGY E+I+ + + Q Sbjct: 990 EEALRISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEEIIGQRLDTLIPQ 1049 Query: 504 NTPSVMNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTM 558 ++ + SL R + G ++ I +L Y++ + Sbjct: 1050 RFTQTHRQHVADFGQAPSLARRMGERREIFGCRQDGTEFPAEASISKFQLDKEVFYTVIL 1109 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E KQ + K +F++ VSHE+RTPLT+I G ++ + Sbjct: 1110 RDVTERKQIE--------------RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSA- 1154 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + + S ++ ++ND+LDI +IESG++ + E L + + A+S++Q Sbjct: 1155 DSEQGKRLLEIATDSTERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPL 1214 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 AN+ + + S + ++ D + Q N+LSNAI F+ + + + +E++ Sbjct: 1215 ANKAGVKLSVSSPS--IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQHYGDELL 1271 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V+D G G+ +L+ + F Q+ +S +GTGLGL + ++++ + G+ + S Sbjct: 1272 LTVKDNGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVL 1331 Query: 799 AKGTLIEIIFPLYDTSH 815 +G+ P+ S Sbjct: 1332 GEGSNFYFTLPILPISQ 1348 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 44/359 (12%), Positives = 105/359 (29%), Gaps = 26/359 (7%) Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 SL + + L + LL S + P + + ++ Q S E+ Sbjct: 306 GSLGTFGLPEGSKLARKIEQLLKSGKRLTPTEIQSLQNWVKLLRQEVAAHEPQAASPETT 365 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 + P + + P+ + + + +P T D+ Sbjct: 366 SAAILQPQPPQAEAKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDL 425 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L+ ++ N I+ + R+D T+ + E + + + Sbjct: 426 --------LILDVEMPYTNGIELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADD 477 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------------QLCSILEATSDGIA 466 P P+ + R+ + E +I A + + Sbjct: 478 FVSKPIVGPELVTRIINRLERVKLLRRVSESRGVGEKISPPSPSFTDWRTIFNAEPECVM 537 Query: 467 IINREGIILSTNRAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 I+ +G +L N A + + V ++ K + L E + + TL Sbjct: 538 IVATDGTLLDINPAGVAAIEADSVGAVIGKRVYSLVVPECQQAFRQ-LNESVCQGKQGTL 596 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKES 582 E + + ++ + + D++++KQ + ++ + + S Sbjct: 597 EFEIITCRGNRRWMATHAVPVRNEKDGNLVQLSITRDVTQYKQAELEIKRINRTLQTLS 655 >gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 1373 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 106/397 (26%), Positives = 177/397 (44%), Gaps = 24/397 (6%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 I P ++ I ++ ++ +L ILE D I ++ IL N K+FGY Sbjct: 739 RVGEIIPIGLERDIAEQGLKESQERLQGILENAEDAIISVDENQNILLFNHGAEKIFGYS 798 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRII 544 + + + L N +V + Y+++ L+ + + G K + Sbjct: 799 PAEAIGQSLENLLPMNARNVHHQYVSDFSHLECQSRKMGERSREVCGRRKTGEEFPAEAS 858 Query: 545 IKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I KL + + DI++ KQ + L AK AE + KS+FLA +SHE+RTPL A Sbjct: 859 ISKLKMRDGWIFTAILKDITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNA 918 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+GFS+++ P N I+ SG +L ++N +LD+SKIE+G+M L+ Sbjct: 919 ILGFSQLMNRD---PSLTSEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSF 975 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L + ++ L K + + N+P+ I D ++Q+ +N+L NAI +T Sbjct: 976 DLHHLLDTLEKMLHLKVETKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDK 1035 Query: 722 GGQIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 GG +S ++ V DTG G+++ E+ F Q ++ + Sbjct: 1036 GG---VSLKVKQQSYPLEKSPETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQ- 1091 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +GTGLGLP+++ V G S GT E Sbjct: 1092 QGTGLGLPISRKFVQMMGGDIRAKSELGTGTSFEFNL 1128 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 55/473 (11%), Positives = 120/473 (25%), Gaps = 38/473 (8%) Query: 121 VSDILHIDPNNHIG--DLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 + + DP ++ TW G AA P Y R+ G Sbjct: 162 LKPLDDFDPRTRPWYSAAVQGGQATWS--PIYLFNRGEFGIT----AAQPFYDRSGNLQG 215 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 +V D R + F + SS + Y I +R Sbjct: 216 VMAVDLVLTVLSDFLRRLKLTPSGEIFILERSGQLVASSTNEPLYQINPNNDQEFRIRGV 275 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + LT+ + ++ H + ++ Y+ L Sbjct: 276 KSQNPLTQATIKHLIESVGSLPEIKQVQQLDFKVNGKSHFLEVSPYSDGYGLDWLIVVVV 335 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 +++ N + L ++ + + Sbjct: 336 PEADFMGQINANRRTTIILCLGALALAIGLGLLTSRWIAR------------QILQLARA 383 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 G L + A ++S+ + + + A + Sbjct: 384 SQAIAFGQLDQTVHAARVSELEVLAESFNQMARQLKTAF----------------VELEI 427 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILS 476 + + E + + +R + + + + + I +G IL Sbjct: 428 RVEERTSQLKDVNQLLREEIWERKQIERALRLSENKFSKAFHSNPNPSILTRLSDGHILE 487 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N + F Y ++ K + + + ++ E + + Sbjct: 488 FNESALSFFEYKSTEVDNKNSLELNIWANSEDRDRVFDLLDKQGIVRSFECDFRTKSGKI 547 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 ++ + L +C +HDI+E KQ + L + I S F+ Sbjct: 548 RIGLYSAELIDLNGQTCVLSILHDITERKQNELTLQNRALIDHSISRIFQQFV 600 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 14/172 (8%), Positives = 37/172 (21%), Gaps = 4/172 (2%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGN 340 + K+ ++ + E + ++ V + N Sbjct: 724 RSVKEWTPEEIKLIQRVGEIIPIGLERDIAEQGLKESQERLQGILENAEDAIISVDENQN 783 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N + Y + I L LL + + + R Sbjct: 784 ILLFNHGAEKIFGYSPAEAIGQ--SLENLL-PMNARNVHHQYVSDFSHLECQSRKMGERS 840 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + R+ + + I + + + +E Sbjct: 841 REVCGRRKTGEEFPAEASISKLKMRDGWIFTAILKDITKRKQAEMVLEQAKD 892 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 53/182 (29%), Gaps = 14/182 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-------DILHIDPNNHIGDLLKRQN 141 +D + + + K G + IG L ++ ++ +H+ ++ Sbjct: 778 VDENQNILLFNHGAEKIFGYSPAEAIGQSLENLLPMNARNVHHQYVSDFSHLECQSRKMG 837 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + G ++ L + G+ I+ + ++ Sbjct: 838 ERSREVCGRRKTGEEFPAEASISKLKMRD------GWIFTAILKDITKRKQAEMVLEQAK 891 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + K + + + ++ N+ SLT + +++ + L Sbjct: 892 DAAEAANRAKSEFLANMSHELRT-PLNAILGFSQLMNRDPSLTSEQQNSLNIINSSGEHL 950 Query: 262 LT 263 LT Sbjct: 951 LT 952 >gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus cytotoxicus NVH 391-98] Length = 585 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 184/389 (47%), Gaps = 28/389 (7%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +F E+ L + + + + EI ++ + +++ L E K + Sbjct: 276 IFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEV-KVRKQVLLPLDIERKHFEVYG 331 Query: 544 --IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 II L HDI+E K+ + + DFLA VSHE++TP+T Sbjct: 332 APIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPIT 377 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +I GFSE + + G + N ++ E + + I + + D++ DLLD+SKIE L+ Sbjct: 378 SIKGFSETLLD---GAMKNQKFCEHFLHIILKESERMQDLIEDLLDLSKIEQQGFKLNMG 434 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V + + + + ++ A +K I+++ ++ ++ D +KQI +N++ NAI +TP Sbjct: 435 NVDIKDLLEDIKMVLDKKAQDKEIVLQMDAMQHV-SVIGDSSRLKQIFINLVHNAIIYTP 493 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG + +S + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 494 VGGTVSVSL-FEDEQNAYVQVADTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSI 552 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT+ + P Sbjct: 553 VKHLVEAHHGMITVESKVGEGTMFTVALP 581 >gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1236 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 123/594 (20%), Positives = 205/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N + + GY + L + + Y + L + E Sbjct: 602 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDA-YE 658 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + T DI+ K + L AK+ AE Sbjct: 659 IEFRILGKNGSYHWVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + E Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I S Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 613 Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + H DD ++ E+Y L + + + N + + Sbjct: 614 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNGSYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + + + + + + + Sbjct: 674 LSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL 200] Length = 558 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 545 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis serovar sotto str. T04001] gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL 4222] Length = 558 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676] Length = 558 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4] gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15] gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2] gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185] gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 558 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24] gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 545 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550] Length = 558 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876] gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W] Length = 558 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552 >gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264] Length = 587 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134] Length = 587 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579] Length = 587 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842] Length = 587 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + ++ D +KQI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581 >gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1236 Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats. Identities = 123/594 (20%), Positives = 205/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N + + GY + L + + Y + L + E Sbjct: 602 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDA-YE 658 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + T DI+ K + L AK+ AE Sbjct: 659 IEFRILGKNGSYHWVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + E Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I S Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 613 Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + H DD ++ E+Y L + + + N + + Sbjct: 614 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNGSYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + + + + + + + Sbjct: 674 LSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 587 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 114/671 (16%), Positives = 241/671 (35%), Gaps = 60/671 (8%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSSLT 244 P A L+ + + ++ + + + Sbjct: 697 DAEKSIHPVAQAGYEQGYLQSLNLTWADTIRGQGPTGTAIRTGKTAIIQNILTDPRFEIW 756 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A + PL+ + ++ N + + L + L Sbjct: 757 RCQASNRGYASSISLPLMNNGQAFGALNIYAAEANAFDSDEVKLLEELTADVAYGIVALR 816 Query: 305 -HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV----- 357 R+ A E + T++ + + ++ N + L +S Sbjct: 817 NRRDRQIAEAALRESQERLALTLEAVNLGIWDWNITTNQIIWSEGHARLFGIESEKFDGT 876 Query: 358 -DDI------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-REN 409 + E GGL+ ++++ + + + D E Sbjct: 877 YEAFQACIYPEDRGGLAEVINSARQQKTDYSHEFRIISPDGNIHWIEGTGKLYYNEMGEA 936 Query: 410 SLAMTFIPFEKANQFPENMPQNG---------------------IEPEDVDTRINKRKME 448 + + + + E Q ++ E + + + + Sbjct: 937 VRMLGIVRDITSRKQIEATLQKVNNELELRVAERTAELVNVNRQLQSELDERQRVEEALR 996 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 I ++L IL+ D I IN I N+ K+FGY E I+ + + Q Sbjct: 997 ISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEAIIGQRLDTLIPQRFTQA 1056 Query: 509 MNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISE 563 ++ + +L R + G ++ I +L Y++ + DI+E Sbjct: 1057 HRQHVADFGQAPNLARRMGERREIFGRRQDGTEFPAEASISKFQLDKEVFYTVILRDITE 1116 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 KQ + K +F++ VSHE+RTPLT+I G ++ + P + + Sbjct: 1117 RKQIE--------------RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLL-PADSEQG 1161 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 S ++ ++ND+LDI +IESG++ + E +L + + A+S+++ AN+ Sbjct: 1162 RRLLEIATDSTERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAG 1221 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + S + ++ D + Q N+LSNAI F+ + + + +E+++ V+D Sbjct: 1222 VKLSVSHPS--IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQQYGDELLVTVKD 1278 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ +L+ + F Q+ +S +GTGLGL + +++V + G+ + S ++G+ Sbjct: 1279 NGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSN 1338 Query: 804 IEIIFPLYDTS 814 P+ S Sbjct: 1339 FYFTLPILPIS 1349 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 49/407 (12%), Positives = 126/407 (30%), Gaps = 38/407 (9%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLK 255 + + +++ + ++ + +Q++ P LR + SL + + L Sbjct: 263 RVDEQVKVLEQAAMTSDRPEIVTLTQETLNPELRSQAIREAHTLAGSLGTFGLPEGSKLA 322 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + LL S + P + + ++ Q S E+ + P + Sbjct: 323 RKIEQLLKSGKKLTPTEIQSLQNWVKLLRQEVAAHEPQAASPETTSAAILQLQPPQAEAK 382 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + P+ + + + +P T D+ L+ ++ Sbjct: 383 VLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDL--------LILDVEM 434 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 N I+ + R+D T+ + E + + + P P+ Sbjct: 435 PYTNGIELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVT-- 492 Query: 436 EDVDTRINKRKMEIEVMQ-----------------LCSILEATSDGIAIINREGIILSTN 478 + R+ + K+ +V + +I A + + I+ +G +L N Sbjct: 493 -RIINRLERVKLLHKVSESRGIGEKNSPPSPSFTDWRTIFNAEPECVTIVATDGTLLDIN 551 Query: 479 RAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 A + + ++ K + V L E + + TLE + + Sbjct: 552 PAGVAAIEADSAGAVIGKRVYSLVVPEYQQVFRQ-LNESVCQGEQGTLEFEIITCRGNRR 610 Query: 538 LLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKES 582 ++ + + D++++KQ + ++ + + S Sbjct: 611 WMATHAVPVRNETDGNLVQLSITRDVTQYKQAELEIKRINRTLQTLS 657 >gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342] Length = 558 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L] gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L] Length = 587 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241] Length = 587 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 458 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 168/368 (45%), Gaps = 23/368 (6%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E + +IL++ +DG+ ++REG +L N AV +F K + + Sbjct: 112 EKNRARAILDSMADGVIALDREGKVLLVNPAVEDIFAIENPADQVKNILGIIR---NYEL 168 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQE 567 L L + L S E ++ + + + + + DI++ ++ Sbjct: 169 EQLLFHALKRNEPMVKVLKILTSE-EPRVFRVHLTPLRSSDTKTEGIVAVLRDITDRRKL 227 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +++F+A VSHE+RTPLT+I GF E + + + Sbjct: 228 E--------------QMRTEFVANVSHELRTPLTSISGFLETLLDGAL--EEPEIARRFL 271 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 ++ + ++NDLL++S IE + +F+PV + E + + + A EK + + Sbjct: 272 EHMSDETERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLTLM 331 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + + N+P ++ D + Q+ N++ NAI +TP+ G+I I + E ++ V DTG+G Sbjct: 332 VTLSPNLPPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARASEQEMKVI-VTDTGIG 390 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + L + + F ++ ++ GTGLGL + K +V+ + G + ST KG++ I Sbjct: 391 IPTESLARIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFAFI 450 Query: 808 FPLYDTSH 815 P+ H Sbjct: 451 LPVAGDLH 458 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 57/241 (23%), Gaps = 11/241 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + ++ + + + ++ + LKR Sbjct: 130 LDREGKVLLVNPAVEDIFAIENPADQVKNILGIIRNYELEQ--LLFHALKRNEPMVKVLK 187 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + E ++ + P+ S + + G ++ + SH Sbjct: 188 ILTSEEPRVFR---VHLTPLRSSDTKTEGI--VAVLRDITDRRKLEQMRTEFVANVSHEL 242 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 S E + + P R +S T + L + L E+ Sbjct: 243 RTPLTSISGFLETLLDGALEEPEIARRFLEHMSDET----ERLTRLINDLLNLSNIEDRQ 298 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + + N P + D + +D Sbjct: 299 FVPNFQPVDMAELIHRVAPVYEPRAREKGLTLMVTLSPNLPPVIGDEDLLMQVLTNLIDN 358 Query: 329 C 329 Sbjct: 359 A 359 >gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1306 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 138/642 (21%), Positives = 245/642 (38%), Gaps = 37/642 (5%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 V + LD+ ++ + YD+ S + + M+ Sbjct: 284 VDDGHTKAQICVPIRSLDQVLGVINVESTRPGKLGNADYDLLSALADHLAVMMERAQLYQ 343 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + +L S + + + + L ++ + Sbjct: 344 EQQRTVSETLLLNRVISATMSNDVATVLNVVCRELAGAFNVPQVACALLDDDEQNLTVVS 403 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 S + V++ V+S + + + S D E Sbjct: 404 EFCIPGRPSGMGAIIPKVGNALVEE------VFSTRSPIQISNTHTDQRALASADLFERR 457 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKAN 422 G + L+ + D + RT L + W +L Sbjct: 458 GTAAILVLPVLIRDAVVGTIGIDALEPRTFTPEEIDLAQAVIWAAGQAL----------- 506 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 N ++ E + + + Q+ ILE+ +D ++ N+ Sbjct: 507 --ANVQLTNALQQELAERSRTEAALRESTTQISRILESITDAFFAVDSNWRFTYVNQESE 564 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L G P E ++ + F + M L + TL+ T E + +R Sbjct: 565 RLLGKPREQLIGQDFWSIFPKPLGVDMEPNHRYALKT--QTTLQFETYTPQYE-RWFEVR 621 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 ++ + DI+ K +L AK+ AE + KSDFLA +SHEIRTP+ A Sbjct: 622 DYPSP----DGLAIYLRDITAQKHTHMELVEAKEAAEAATRAKSDFLATMSHEIRTPMNA 677 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +IG + ++ + N ++ I SG+ +L I+ND+LD SKIESGK L +P Sbjct: 678 VIGMTGLLLDTPL----NAEQRDFVETIRNSGDALLTIINDILDFSKIESGKFELEQQPF 733 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L + + A+ LV A EK+I + A N+P+ I D+ V+QI +N+L+NA+ FTP+ Sbjct: 734 DLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDVTRVRQILVNLLANAVKFTPA 793 Query: 722 GGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G +++ + EV + VRDTG+G+ L + K F Q+ S + GTGLGL Sbjct: 794 GEVVVMIEGRRIRDQLFEVHIAVRDTGIGIPADRLNRLFKAFSQVDASTTRQYGGTGLGL 853 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818 +++ + G+ ++ ST G+ P ++ HD Sbjct: 854 AISQRLCALMGGRMWVESTVGVGSTFHFTIIAPAAESPQRHD 895 Score = 44.6 bits (104), Expect = 0.073, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 68/245 (27%), Gaps = 24/245 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYG 145 + +D++ +++E + +G ++IG + L +D + LK Q T Sbjct: 548 FAVDSNWRFTYVNQESERLLGKPREQLIGQDFWSIFPKPLGVDMEPNHRYALKTQTTLQF 607 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204 +T ++ P G I + + Sbjct: 608 ETYT-----PQYERWFEVRDYPSPD---------GLAIYLRDITAQKHTHMELVEAKEAA 653 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-T 263 K + + P + L + + + E Sbjct: 654 EAATRAKSDFLATMSHEIR-------TPMNAVIGMTGLLLDTPLNAEQRDFVETIRNSGD 706 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + DF I ++ +Q L++ + + + +S R P Sbjct: 707 ALLTIINDILDFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVP 766 Query: 324 ETVDK 328 + ++ Sbjct: 767 QAIEG 771 >gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 930 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 119/546 (21%), Positives = 221/546 (40%), Gaps = 30/546 (5%) Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + + Y + + ++ +T + F + + Sbjct: 150 WHRYRKSSFLARQTLEQLYRASEERRRAAESAEQAWVRIIDTSENL--LFVIDRTFRILR 207 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N +F + + L + + + ++L D L Sbjct: 208 VNLAFARRLGISKEEVVGRR-CYELLCRHREPLPSCPLHAIIL---DHQPRTVETILPPW 263 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 ++ + + ++ I + + + ++R++ Q S+++ + Sbjct: 264 NFD------CRMMAAPLLDASGQHEATVFIIQDISEHKRSERELRAAREQYQSLVQNSHG 317 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I I+ G++ + +KL G+ + I+ K F + + ++ + E+ + Sbjct: 318 IIYTISPHGVVTYVSPGYTKLLGHEPDHIVGKHFREIVHPDDVALCEDFYREVWEHGEIR 377 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 ++ + L + DI+E KQ + +L A++ AE Sbjct: 378 R-GLEYRIPHRDGSIRWHLSNFIPLTNEEGEIESFVGNAMDITEQKQHQAELQAAREAAE 436 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S KSDFLA +SHEIRTPL AI+GFS + + G + EY + +D+S L++D Sbjct: 437 AASRAKSDFLALISHEIRTPLNAIVGFSALARRTADGV----QLREYVDILDQSSRLLMD 492 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 +VND+LD+SK+E+G++ L P +L EAV A K++ + +P I Sbjct: 493 LVNDVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPPWIQ 552 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNY 751 D +QIA N+LSNA+ FT SG +++ T V L VRDTG+G+ Sbjct: 553 GDPIRFRQIASNLLSNAMKFTESG-CVLLRVTAQDQAPGVEGRCLVRLEVRDTGIGIEAR 611 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 ++ +PF Q+ + GTGLGL + +V+ G+ + STP G+ + P Sbjct: 612 QIASLFQPFQQLDPGISRKYGGTGLGLAIVHRLVELMQGRVEVASTPGTGSSFTVELPFV 671 Query: 812 DTSHPH 817 +S P Sbjct: 672 LSSPPQ 677 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 72/193 (37%), Gaps = 9/193 (4%) Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + N++ + + + +E + +R E I++ + + Sbjct: 136 YAGANTIGWIVSANWHRYRKSSFLARQTLEQLYRASEERRRAAESAEQAWVRIIDTSENL 195 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + +I+R IL N A ++ G E+++ + L ++ + + L I+ +T Sbjct: 196 LFVIDRTFRILRVNLAFARRLGISKEEVVGRRCYELLCRHREPLPSCPLHAIILDHQPRT 255 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580 +E I R++ L +S + DISE K+ + +L A++ + Sbjct: 256 VETILPP-----WNFDCRMMAAPLLDASGQHEATVFIIQDISEHKRSERELRAAREQYQS 310 Query: 581 ESSHKSDFLARVS 593 + + +S Sbjct: 311 LVQNSHGIIYTIS 323 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 12/234 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + I HG + +S K +G+ ++G ++ + + ++ + Sbjct: 319 IYTISPHGVVTYVSPGYTKLLGHEPDHIVGKHFREIVHPDDVALCEDFYREVWEHGEIRR 378 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 G P ++ +P+ + E F G + +A + + Sbjct: 379 GLEYRIPHRDGSIR-WHLSNFIPLTNEEGEIESFVGNAM--DITEQKQHQAELQAAREAA 435 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--- 258 K ++ + R + V Sbjct: 436 EAASRAKSDFLALISHEIRTPLNAIVGFSALARRTADGVQLREYVDILDQSSRLLMDLVN 495 Query: 259 --YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + E L + + + F + + F+ + P Sbjct: 496 DVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPP 549 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 61/238 (25%), Gaps = 13/238 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTW 143 + ID + ++ + +G +++G R ++ P+ + ++ Sbjct: 195 LLFVIDRTFRILRVNLAFARRLGISKEEVVGRRCYELLCRHREPLPSCPLHAIILDHQPR 254 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +T L P + A P+ + + I+ + ++ Sbjct: 255 TVETILPP-----WNFDCRMMAAPLLDASGQ--HEATVFIIQDISEHKRSERELRAAREQ 307 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + L + G + + V H DDV E + Sbjct: 308 YQSLVQNSHGIIYTISPHGVVTYVSPGYTKLLGHEPDHIVGKHFREIVHPDDVALCEDFY 367 Query: 261 LLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 E + + + F L N E ++ + + Sbjct: 368 REVWEHGEIRRGLEYRIPHRDGSIRWHLSNFIPLTNEEGEIESFVGNAMDITEQKQHQ 425 >gi|304412088|ref|ZP_07393698.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307305983|ref|ZP_07585729.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304349638|gb|EFM14046.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306911476|gb|EFN41902.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1629 Score = 367 bits (943), Expect = 4e-99, Method: Composition-based stats. Identities = 121/778 (15%), Positives = 265/778 (34%), Gaps = 60/778 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 D G + ++ + G +G C + I ++L + + T Sbjct: 363 DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTSLNRIT 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 + +G++L A+PIY + + +G + + L L+++ Sbjct: 423 SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------KNKVSSLTE 245 + + + D +QQ + ++ T Sbjct: 479 VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYSREQLVGKTH 538 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYL 303 + + + S + ++ G + + + ++ Sbjct: 539 AILQSGEHDVSFWRSMWQQINSGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + GN+ N L Y + Sbjct: 599 ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------SARLHTIQWNREN 409 + I + L + + + + R T + Sbjct: 659 EMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFVYKAKAEGSETRNWTYVRKDGS 718 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ + E + GI + + ++ + L E GI N Sbjct: 719 QFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGIWTWN 778 Query: 470 REGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 G L N + ++ + + + +++ + + + + L + + Sbjct: 779 LLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDP 838 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + + +++ DI+E +Q + L AK+ A+ S+ Sbjct: 839 IFRVVRTDGSIRYVQAAAQVERDKQGHAIRVIGINLDITEQQQLEESLREAKQEADAASA 898 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ A++G ++I+ + +Y N + +L ++ND Sbjct: 899 AKSAFLANMSHEIRTPMNAVLGMLQLIQYTSLSR----QQQDYVNKTQTAAKSLLGLLND 954 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SKI++GK+ L P S++ + + ++ +K + + +P +LAD Sbjct: 955 ILDFSKIDAGKLVLDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLLADQL 1014 Query: 703 SVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKP 759 ++QI +N+ NA+ FT G I+ I + V + + DTG+G+++ ++E+ Sbjct: 1015 RLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIERIFTG 1074 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSH 815 F Q +S R GTGLGL ++K ++ + + S G+ FP+ Sbjct: 1075 FEQAESSTSRRFGGTGLGLAISKRLIGLMGSELQVTSKVGVGSRFWFDMTFPIIQVEE 1132 Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 113/426 (26%), Gaps = 35/426 (8%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + EF G RGFG + RV + A ++ + ++ + E+Y I Sbjct: 92 TRDVDHEFPGARGFGFIR--RVPSADEAAFIARARQDDWPDFNIRQLNAHDGERYVIEYI 149 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P R K V AH+ + + + + + Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 + ++ P N Sbjct: 207 IY--------------------RTGLVPKSQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + DI A + + + D + Sbjct: 247 MTKLL----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRQWQIEVIAYPSFI 302 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ + + I + + ++ + + + S+LE + DGI Sbjct: 303 KSLHLNQPSLVLLSGSLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G I S N+ +LFGY L + + + L + L + Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTS-LNR 420 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583 IT ++ LS + T+ DI+ + + + E++ + Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480 Query: 584 HKSDFL 589 ++ L Sbjct: 481 KRTHAL 486 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 38/389 (9%), Positives = 103/389 (26%), Gaps = 29/389 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 D +G + E+++ + G +++G + + + + +W+G+ Sbjct: 509 TDPNGVILEVNDNFCRISGYSREQLVGKTHAILQSGEHDVSFWRSMWQQINSGQSWHGEI 568 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205 T + + P++ + F I +R LG L Sbjct: 569 CNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVLD 626 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E+ + V+ + + T H + + L Sbjct: 627 AASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAEY 686 Query: 266 ESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + F + +Q+ ++++ E YL Sbjct: 687 GKDIQGFDVFVYKAKAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDI 746 Query: 310 SLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 SL + N + + + + ++ GN N + Y + + G Sbjct: 747 SLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQG 804 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 D+ A L + ++ + + + + ++ Sbjct: 805 LTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDPIFRVVRTDG-SIRYVQAAAQVERDKQ 863 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + GI + + + + + + Sbjct: 864 GHAIRVIGINLDITEQQQLEESLREAKQE 892 >gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 631 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 118/504 (23%), Positives = 211/504 (41%), Gaps = 15/504 (2%) Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E L +T + + + N + + + + + Sbjct: 128 ESNRLERLLLQTEQTARVGGWEIDLRTNQVFWTREMYHILDTTAHEYTPTIENQNFFHTN 187 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L AI M+ + ++ R + +F + + G Sbjct: 188 ATLIQLEAIFRQMIEQRGSFDMSVEMRTFRGRSFWGRFTG------RVELEFGQPIKIYG 241 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + +I E T GI I +G +L N A+ +L G+ E Sbjct: 242 SLQDVTEHHQLTEALRVAEHDYRTIFETTKIGIFRITPDGRVLRANPALVRLAGFAHEHE 301 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L YL E+L + + + + + + + + Sbjct: 302 LVDYVADLTTMYVEPQRFEYLRELLQTNGSYDEIESEVYRPATGERIWISETSRLVYAED 361 Query: 553 CYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 T+ +I+ KQ + L HA+ AE + KS FLA +SHE+RTPL AIIG+SE Sbjct: 362 GSMLYAEGTIQEITARKQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLNAIIGYSE 421 Query: 609 VIKNQRF--GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++ + P ++ I+ +G+ +L++VND+LD++K+E+GK + E L+ Sbjct: 422 LLMDDTDFDDPTMVEQFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAAETFDLNS 481 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 V + I+ + A + + ++P I D ++QI LN+LSNA FT +G I Sbjct: 482 LVRDLIATINPMAQKNANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAGS-IN 540 Query: 727 ISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 IS + ++ V RVRDTG+GM + ++++ +PF Q S R GTGLGL L + + Sbjct: 541 ISVSFDPASQHVQCRVRDTGIGMNDEQMQRLFEPFTQGDASTTRRYGGTGLGLALCRHFI 600 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G + S +G++ I+FP Sbjct: 601 ELLNGSIQVESVFGQGSIFTIVFP 624 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 38/141 (26%), Gaps = 3/141 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144 + I G + + L + G + + D++ + ++ +LL+ ++ Sbjct: 274 IFRITPDGRVLRANPALVRLAGFAHEHELVDYVADLTTMYVEPQRFEYLRELLQTNGSYD 333 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + T + I + +Y+ + G + + Sbjct: 334 EIESEVYRPATGERIWISETSRLVYAEDGSMLYAEG--TIQEITARKQVEEALRHARDAA 391 Query: 205 SHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 392 EAANHAKSTFLANMSHELRTP 412 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 41/381 (10%), Positives = 104/381 (27%), Gaps = 33/381 (8%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KR 139 V W G ++ + IG ++ + P L Sbjct: 32 PVGLVW---FQGSQVFFNQAVTAMIGYSNAEI---ATTEQWFSTLYGPEAASMRQLYATT 85 Query: 140 QNTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 G+T + + + LA+ G R +V N L Sbjct: 86 SAATLGQTIHGFVVNRQNQSCLLECTLASH----------GHRQVWLVRDITESNRLERL 135 Query: 197 GKRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ +++ +E Y I + ++N+ T + + Sbjct: 136 LLQTEQTARVGGWEIDLRTNQVFWTREMYHILDTTAHEYTPTIENQNFFHTNATLIQLEA 195 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + S + S+ + ++T + K H L+ Sbjct: 196 IFRQMIEQRGSFDMSVEMRTFRGRSFWGRFTGRVELE-FGQPIKIYGSLQDVTEHHQLTE 254 Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLD 371 E+ + I F + G + ANP+ + L + + ++ L+T+ Sbjct: 255 ALRVAEHDYRTIFETTKIGIFRITPDGRVLRANPALVRLAGFAHEHELVDYVADLTTMYV 314 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+ + L +++ + + + + + ++ + + Sbjct: 315 EPQRFEYLRE----LLQTNGSYDEIESEV--YRPATGERIWISETSRLVYAEDGSMLYAE 368 Query: 432 GIEPEDVDTRINKRKMEIEVM 452 G E + + + Sbjct: 369 GTIQEITARKQVEEALRHARD 389 Score = 43.1 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 9/138 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFL 501 +R++ + LE G+ +G + N+AV+ + GY +I + F+ Sbjct: 14 QRRLIKATRRKDVTLEQFPVGLVWF--QGSQVFFNQAVTAMIGYSNAEIATTEQWFSTLY 71 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + ++ + TL + G + S + + DI Sbjct: 72 GPE-----AASMRQLYATTSAATLGQTIHGFVVNRQNQSCLLECTLASHGHRQVWLVRDI 126 Query: 562 SEWKQEKNKLSHAKKIAE 579 +E + + L ++ A Sbjct: 127 TESNRLERLLLQTEQTAR 144 >gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 1364 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 130/706 (18%), Positives = 256/706 (36%), Gaps = 65/706 (9%) Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + P+ + SG+R GF ++ P+ +++ Sbjct: 185 SGAPVMTSPISLSGYRVPNESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ D+ + + A + V++ T ++ P Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N + + + L N + L Sbjct: 305 FVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + + NP+ + Y + + I+ L+TLL + + +D Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTTLLSPQPYAMSEVD------HADAAL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 ++ T++ + + + + + D + ++ Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A KL GY +++ + Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGR 536 Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + F+E H L E + TLE + + + L + Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+GLGL +++ +V+ G+ + S P +G+ + L +S P Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSSPPQ 877 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G G+G +H RV A + + ++ + + E+Y + + Sbjct: 99 RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S + + L + Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGAPVMTSPISLSGYRVPNESGFLVLLAVYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + +VY+ ++ S Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++D + + + ++A++P ++ + R I + Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDG 464 + M + + + + + ++ + M+L +++ +S+ Sbjct: 303 AGFVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I N A +FGY ++ + + T L + + Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSP--QPYAMSEVDHADAALAGNA 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T+ ++ + + + S DIS+ + ++ E Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479 Query: 581 ESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 68/283 (24%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138 D+ G++ + K +G A ++IG R L + + +L + L+ Sbjct: 509 TDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 32/375 (8%), Positives = 81/375 (21%), Gaps = 12/375 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + G A + I L + + T+ Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMR 427 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G ++ + + PI SG F L+ H ++ Sbjct: 428 HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + S + K + + + + + + L + + Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E +Q + + + S + + + + Sbjct: 542 FVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 H + + LT+ K + + SD A + Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + L + + I + + + +E Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715 Query: 451 VMQLCSILEATSDGI 465 L + + +D + Sbjct: 716 PFDLNQLFDNIADLM 730 >gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1670 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 117/668 (17%), Positives = 242/668 (36%), Gaps = 50/668 (7%) Query: 178 FRGFGIVHV--NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---P 232 + GF + + + K + K+ + + + Y FS Sbjct: 508 YVGFALERLYLMEQGRNKNEALKEREIKYRSIFDNASDAILLMDLNYKFFSANPEAVSMF 567 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-------ESSLPEQEDFHTINLN--QY 283 + ++ S + + E L E L + Sbjct: 568 RCGSEEELLSYRPENLVAPNQREGESSSDLLDEWVGKTIDAGGLDFDLICRRSDGEEFYA 627 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342 + + + + +L T++ G + Sbjct: 628 SVRARKMVISGTPFIQATLRDVTEKRRSKEEIERSVSLLTATIESSADGILAVDGYGQVV 687 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 N F + + I +G +S + ++D + D + + + ++ Sbjct: 688 AWNSRFSSMWNIT--EHILRSGVVSDVFG--YIADQLEEGSSVHGLWDYSLESEAGQIEE 743 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + P + + + + + R+++ ++ +L I+E Sbjct: 744 LILVDGRIVEKYSNPQRIGS---DIVGRVWSFRDVTRKRLSENELRDSYQRLNDIIEFLP 800 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDL 521 D +I+ G++L+ N+AV ++ G +D++ K + L + + Sbjct: 801 DPTIVIDSNGVVLAWNKAVEEVTGVSKQDMIGKADYEYALPFYGERRPILIDSALKDDLE 860 Query: 522 RQTLEKITLGST---------------KEEKLLSLRIIIKKLPFSSCYSLT--MHDISEW 564 T +L + + M +++E Sbjct: 861 PLTDRYESLERRYGMLYGEVYTPRAFNGQGAYFWGVAGPLRDHSGKVVGAVECMRNVTER 920 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +L+ A+ AE + KS+FLA +SHEIRTP+ +IIGF ++++ Sbjct: 921 RRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSADLDSA----QR 976 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY N + S + +L I+ D+LD SKIE+GK L LD + + ++V + A K I Sbjct: 977 EYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAESKGI 1036 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVIL 739 S ++P + D ++Q+ N+++NA+ FT G ++ + T N + Sbjct: 1037 DFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRG-EVNLIVTCEENCTGEASIKF 1095 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRD+G+G+++ E+ F Q S + GTGLGL +A+++V+ G + S P Sbjct: 1096 IVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVESHPG 1155 Query: 800 KGTLIEII 807 +G+ Sbjct: 1156 EGSSFYFT 1163 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 16/155 (10%), Positives = 36/155 (23%), Gaps = 17/155 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---------------HIDPNNHI 133 ID++G + ++ + + G MIG + + ++P Sbjct: 806 IDSNGVVLAWNKAVEEVTGVSKQDMIGKADYEYALPFYGERRPILIDSALKDDLEPLTDR 865 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + L+R+ P A P+ + + G + Sbjct: 866 YESLERRYGMLYGEVYTPRAFNGQGAYFWGVAGPLRDHSGKVVGAVEC--MRNVTERRRV 923 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 R K + + Sbjct: 924 EQELNRARLAAEAATRAKSEFLANMSHEIRTPMNS 958 >gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 660 Score = 367 bits (942), Expect = 4e-99, Method: Composition-based stats. Identities = 103/425 (24%), Positives = 186/425 (43%), Gaps = 22/425 (5%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + ++ + + + ++ + Sbjct: 218 EMTERQKTEQELRKYRIQLEEKVAERTAELAQLNVQLQQDIAKRKQVEEELR----KFSR 273 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E +++ I I + +G I N A S+ GY +++ K P L + Sbjct: 274 AVEQSANTIIITDLKGDIQFVNPAFSRQTGYAYHEVIGKNLRFLKSGKYPPAFYKKLWDT 333 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + L + + L K +L I + + Y DI+E K+ + +L Sbjct: 334 IKLG--RVWQGEVLNQHKNGELFWNFTTISPIKDQNGQTTHYLAISRDITERKRAEAELF 391 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 +K++AE + K+ FL +SHE+RTPLTAI+G+++++K + E I R Sbjct: 392 KSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQDKR---LTDEQREGIQIIYR 448 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L +++D+LD+SKIE+GK+ L L + + L + +K I + + Sbjct: 449 SGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIRFEQKGIELVYEPLS 508 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTG 745 +PR AD + ++QI LN++SNAI FT +G Q+ + +T ++ + V D+G Sbjct: 509 ELPRAAHADRKRLRQILLNLVSNAIKFTETG-QVSLKVQYTPIPDNKNQGKMRVDVEDSG 567 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ LEK PF Q+ N EGTGLGL + K +V+ G+ + S +G+ Sbjct: 568 IGIAAAHLEKIFLPFQQVGNKM-YYSEGTGLGLSITKTLVEMMGGQLQVKSRLGRGSHFW 626 Query: 806 IIFPL 810 P+ Sbjct: 627 FEIPI 631 Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 67/249 (26%), Gaps = 13/249 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G ++ ++ + G ++IG L + + + D +K W G+ Sbjct: 285 TDLKGDIQFVNPAFSRQTGYAYHEVIGKNLRFLKSGKYPPAFYKKLWDTIKLGRVWQGEV 344 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + ++ PI +N + + + I A + + Sbjct: 345 LNQHKNGELFWNFTTIS--PIKDQNGQTTHY--LAISRDITERKRAEAELFKSKELAESA 400 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 ++ K + + + + ++ + LT+ ++ LLT Sbjct: 401 NQAKTAFLTNMSHELRT-PLTAILGYAQLLKQDKRLTDEQREGIQIIYRSGEHLLTLISD 459 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQN-------NSKESFEYLSHRNHPSLSAYFDEGEN 320 L + + Q+ ++ L + L Sbjct: 460 ILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIRFEQKGIELVYEPLSELPRAAHADRK 519 Query: 321 LTPETVDKC 329 + + Sbjct: 520 RLRQILLNL 528 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 18/215 (8%), Positives = 44/215 (20%), Gaps = 14/215 (6%) Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPS 310 L L E + + L + + Sbjct: 200 ALNMSHAALTKINGQLQQEMTERQKTEQELRKYRIQLEEKVAERTAELAQLNVQLQQDIA 259 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 +E V++ + G++ + NP+F T Y + I G + Sbjct: 260 KRKQVEEELRKFSRAVEQSANTIIITDLKGDIQFVNPAFSRQTGYAYHEVI----GKNLR 315 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 K + +Q + Sbjct: 316 FLKSGKYPPAFYKKLWDTIKLGRVWQGEVLNQ---HKNGELFWNFTTISPIKDQNGQTTH 372 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 I + + + + ++ + E+ + Sbjct: 373 YLAISRDITERKRAEAELFKSKE----LAESANQA 403 >gi|16124905|ref|NP_419469.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221233626|ref|YP_002516062.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter crescentus NA1000] gi|13421867|gb|AAK22637.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220962798|gb|ACL94154.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter crescentus NA1000] Length = 776 Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats. Identities = 119/649 (18%), Positives = 250/649 (38%), Gaps = 26/649 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 A + L ++ ++ H + Y + + + + Sbjct: 7 QDIDALRASEAFFRLLTEQAG---DVISRHRLSGTDHYVSPAVERMMGWTAEEMLEAGFK 63 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 +Y D + Y + + + + + + +++ + E ++ Sbjct: 64 AFYHPDDTPAVYDVYNRMRAGVEHCSVRYRGRRKDGRYVWLESHLTLVRDEAGAPSELIA 123 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP---------FFVYSHGNL---FYANPSFLLLT 352 ++ T E + + + + Y +P F L Sbjct: 124 VTRDIDERVQLEDEARHTREAMRETQQRAMLAEQVAQVAFWRVDLITNEVYLSPRFRELY 183 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + I + LS ++ + + RT + R+ I Sbjct: 184 GWTQDEPISLGEVLSRF-----HPEDRPVARARVAEHLRTGEPSRNRMDRIIRLDGAVRH 238 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + + +G + D ++ + + + +AT D + ++R G Sbjct: 239 IVGSFEFDFDDNGRPIAMSGTTVDVTDLVAAQQSLAKTESRFQDLAKATRDIVIEVDRRG 298 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 IL + AV + GY ++L + N + +L+ Sbjct: 299 NILFVSAAVEPVLGYAEGELLGRKAAKLTHPNDLPGLVQAFGAVLADPEGLPPVLEARAL 358 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 K+ + L+ + + DI+E+K+ +++L+ + AE+ +S FLA + Sbjct: 359 HKDGHWVWLQGRPVLNRTAGRIEGVIQDITEYKRARDELAAEQARAEQALEARSAFLANM 418 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPLTA+IGF+ +++ P +Y I +G +L ++ND+L++SK+E+ Sbjct: 419 SHELRTPLTAVIGFAALVEGLDDLP---ETARDYVGRISTAGKALLSVINDVLEMSKLET 475 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711 G++ H P +L + + + + L+A EK + I + PR+ + D V+Q+ +N+ Sbjct: 476 GQVQAHLAPCALAPLIDDTVRMFGLHAAEKNLQIAVRMVDPPPRVLMIDPDRVRQVLINL 535 Query: 712 LSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + NAI +T +G I + EE+ + V+DTG+G+ + K F QI +++ Sbjct: 536 IGNAIRYTDAGS-ITLEVIWRGELEELFVAVKDTGIGIDPADQAHLFKRFSQIESARARS 594 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G+GLGL ++K +V+A G+ S P +G+ P D Sbjct: 595 RGGSGLGLVISKGLVEAMGGRIGASSKPGEGSTFWFAIPASGPLRDEDA 643 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 26/370 (7%), Positives = 81/370 (21%), Gaps = 32/370 (8%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGT 155 +S + + +G A +M+ + + ++ +G Sbjct: 41 YVSPAVERMMGWTAEEMLEAGFKAFYHPDDTPAVYDVYNRMRAGVEHCSVRYRGRRKDGR 100 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH------LHE 209 YV ++ + S + + + L E Sbjct: 101 --YVWLESHLTLVRDEAGAPSEL--IAVTRDIDERVQLEDEARHTREAMRETQQRAMLAE 156 Query: 210 IKKGHSS-----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV--LKTEKYPLL 262 + + E Y + + + H +D + L Sbjct: 157 QVAQVAFWRVDLITNEVYLSPRFRELYGWTQDEPISLGEVLSRFHPEDRPVARARVAEHL 216 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + E S + ++ F +++ + + T Sbjct: 217 RTGEPSRNRMDRIIRLDGAVRHIVGSFEFDFDDNGRPIAMSGTTVDVTDLVAAQQSLAKT 276 Query: 323 PETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 V GN+ + + + + Y + + Sbjct: 277 ESRFQDLAKATRDIVIEVDRRGNILFVSAAVEPVLGYAEGELLGRKAAK----LTHPNDL 332 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ++ +D + + + + + P G+ + Sbjct: 333 PGLVQAFGAVLADPEGLPPVLEARALHKDGH-WVWLQGRPVLNR----TAGRIEGVIQDI 387 Query: 438 VDTRINKRKM 447 + + + ++ Sbjct: 388 TEYKRARDEL 397 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 35/405 (8%), Positives = 94/405 (23%), Gaps = 34/405 (8%) Query: 49 FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIG 107 + T + + ++ F + + R +D G + +S + +G Sbjct: 253 PIAMSGTTVDVTDLVAAQQSLAKTESRFQDLAKATRDIVIEVDRRGNILFVSAAVEPVLG 312 Query: 108 NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLK--RQNTWYGKTTLWPIEGTNLYVPIDLA 164 +++G + ++ + G +L + +G + L Sbjct: 313 YAEGELLGRKAAKLTHPNDLPGLVQAFGAVLADPEGLPPVLEARALHKDG----HWVWLQ 368 Query: 165 ALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 P+ +R G ++ R + E + + + Sbjct: 369 GRPVLNRTAGRIEG-----VIQDITEYKRARDELAAEQARAEQALEARSAFLANMSHELR 423 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 ++ + + K L + + + + + Sbjct: 424 TPLTAVIGFAALVEGLDDLPETARDYVGRISTAGKALLSVINDVLEMSKLETGQVQA--H 481 Query: 284 TKKQYFGTLQNNSKESFEYLSHRN---------HPSLSAYFDEGENLTPETVDKCPIPFF 334 L +++ F + P + + + ++ Sbjct: 482 LAPCALAPLIDDTVRMFGLHAAEKNLQIAVRMVDPPPRVLMIDPDRVRQVLINLIGNAIR 541 Query: 335 VYSHGNL---FYANPSFLLLTKYKSVDDIE-IAGGLSTLL-----DAPKLSDNNAIKPVM 385 G++ L I + L + + + Sbjct: 542 YTDAGSITLEVIWRGELEELFVAVKDTGIGIDPADQAHLFKRFSQIESARARSRGGSGLG 601 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 L S A R+ E S IP + + P+ Sbjct: 602 LVISKGLVEAMGGRIGASSKPGEGSTFWFAIPASGPLRDEDAGPE 646 >gi|88812847|ref|ZP_01128092.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nitrococcus mobilis Nb-231] gi|88789917|gb|EAR21039.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Nitrococcus mobilis Nb-231] Length = 1656 Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats. Identities = 115/773 (14%), Positives = 255/773 (32%), Gaps = 72/773 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK----RQNTWY 144 + ++ +E+ + +G A + G + + L +DP L Sbjct: 790 LGRDLTVRRFTEQAGEQLGLLASDV-GRPIDHIRHNLVLDPVAGEASSLDLERLADEAIA 848 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + L P + + + G ++ Sbjct: 849 HVREVVREVRDSARRWYSLHIRPYLTLDNKLDGA--VLVLLDIDARKRSELAIAEARDYA 906 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + + V E+ +R + ++ + + + Sbjct: 907 ENIIDTVREPLLVLDERLHAERANRAFYRTFGVRRTETLGRCLYELGNRQWDIPRLRELM 966 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-------FEYLSHRNHPSLSAY 314 ++P ++ Q ++ + Sbjct: 967 EQILPQNVPVEDFQVEYGFEQLGRRIMLLNARRIRDPQQQTQRILLAIEDITERRRAETA 1026 Query: 315 FDEGENLTPETVDKCPIPFFV-----YSHG-----NLFYANPSFLLLTKYKSVDDIEIAG 364 E E + + V +G N +F T + + Sbjct: 1027 LRESELRYRTLFESMDQGYCVIEMLFDRNGTPTDYRFVEINAAFEKQTGFS--AALGK-- 1082 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQ 423 + + + + + + + + +W + + Sbjct: 1083 ---RMRELAPAHEAHWFEIYGKVALTGEPVRFTNEAKALARWFDGYAFRL---------G 1130 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 ++ + + + + E E ++ +I+E++ D I + GII + N Sbjct: 1131 GSKSRRVAVLFTDITERKRA----EEESARIAAIVESSQDAIVSKDLNGIIQTWNAGAQH 1186 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +FGY ++ + +P + + N + L I + + T+ K+ L+ + + Sbjct: 1187 IFGYTAQEAIGQPIGIIIPPNHMDEEPNILERIRRGE--RVDHYETVRQRKDGTLVDISL 1244 Query: 544 IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + DI+E K+ + ++ K + S K +FLA ++HE+R P Sbjct: 1245 TVSPILDARGRVSRASKIARDITERKRMERQIQGQAKELAEVSRRKDEFLAMLAHELRNP 1304 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L I + + Q+ + E I+R + +++DLLD+S+I SG++ L Sbjct: 1305 LAPIFNALQ-LIGQKGENALHEEARE---IIERQVRHMARLIDDLLDVSRITSGRIRLRP 1360 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E V L+ V A+ ++ + + + A + AD ++QI N+L NA ++ Sbjct: 1361 ERVDLNTIVERAVERMRPLIDRRGQQLSIEPAQQPIWLDADPTRLEQIFGNLLDNASKYS 1420 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + G I + + + RVRD G G+ L + + FGQ S + G G+GL Sbjct: 1421 TNNGHIDLRIERDDHRAIS-RVRDDGEGIAADTLPRIFELFGQAERSLERSEGGLGIGLA 1479 Query: 780 LAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY------------DTSHPHDC 819 L K++V+ + G +S G+ + P+ T+ P DC Sbjct: 1480 LVKSLVEMHGGTVDAYSEGLGHGSEFVVRLPVASSQARPADTTGPRTAAPQDC 1532 Score = 95.1 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 42/406 (10%), Positives = 115/406 (28%), Gaps = 11/406 (2%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 R N K L ++ + G + + P +++ L Sbjct: 645 EIRRVNVEVIPLKNLRERCLLILFEDAGAGERLPLPDRQSPRGARLPRDEAAKRIAELET 704 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 A D L++ + + E E+ +IN T K+ + E +++ Sbjct: 705 ELAETRDYLQSMQEWHEAANEEVQSANEELQSINEELETSKEELESSNEELATVNEEMAN 764 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 RN D T + + + + D Sbjct: 765 RNTELNRLNNDLANLQTSTGL----AIVLLGRDLTVRRFTEQAGEQLGLLASDVGRPIDH 820 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + L ++ + + +D + ++ + ++ P+ + Sbjct: 821 IRHNLVLDPVAGEASSLDLE-RLADEAIAHVREVVREVRDSARRWYSLHIRPYLTLDNKL 879 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + + ++ + +I++ + + +++ NRA + F Sbjct: 880 D--GAVLVLLDIDARKRSELAIAEARDYAENIIDTVREPLLVLDERLHAERANRAFYRTF 937 Query: 486 GYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRI 543 G + L + Q + + +IL ++ + + +++ L Sbjct: 938 GVRRTETLGRCLYELGNRQWDIPRLRELMEQILPQNVPVEDFQVEYGFEQLGRRIMLLNA 997 Query: 544 IIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + P L + DI+E ++ + L ++ Sbjct: 998 RRIRDPQQQTQRILLAIEDITERRRAETALRESELRYRTLFESMDQ 1043 >gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1139 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 111/555 (20%), Positives = 219/555 (39%), Gaps = 33/555 (5%) Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + ++ Q E L E T + Sbjct: 310 GPIQRLVQMAAAMAGGDLARRSGLADGQGELAELGRALDAMAD-----RLGERVRFTQDI 364 Query: 326 VDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 +D P F G N ++ +I T ++P ++ I Sbjct: 365 IDAIPARIVFKGLDGRYLGCNRAYAR--DIHPQAEILGKTCRET--ESPAQAERIEISDA 420 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L R+ + + + M + + + + D + ++ Sbjct: 421 ELLRNPEQTMEMEIESA---FRDGSLHDMMVLKSVFKDASGRPAGIVNVALDITDRKRSE 477 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + + + ++L + DG +++ G I+ +N A ++ GY +++ R + ++ Sbjct: 478 KALLASETKYRALLASIRDGFVVVDDNGRIMESNPAFREMVGYSRDELGRLTYKDLTPES 537 Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559 L + EK ++ ++ + + + + P + Y + Sbjct: 538 WHETEETILRTAVDTCGFSDVFEKE--YRRRDGSVVPVALRLHRYPSRAGENYRYFAIVR 595 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K + L AK+ AE + KSDFLA++SH+IRTPL A+IG +E+ G L Sbjct: 596 DITDVKAIEADLRQAKETAETANRAKSDFLAKMSHDIRTPLHAVIGMTEL----TLGTLL 651 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + + + S +L ++ND+LDIS+IE+ K+++ E L ++ + ++ A Sbjct: 652 SAQQRDALETVRESAASLLALINDILDISRIEARKLDVAREDFDLRRTLAATVRAMRPQA 711 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736 +K + + + A +PR + D V+QI N++ NA+ FT GG + +S + + Sbjct: 712 AQKALFLGLAIAPAVPRFVTGDEVRVRQILTNLIGNALKFTDQGG-VTVSVAPMAGPDAP 770 Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V DTGVG+ + +L + F Q S GTGLGL + + + G Sbjct: 771 GDPLFLEFTVADTGVGIPSDKLASIFEMFTQANASVGKHYGGTGLGLAICRELARLMGGG 830 Query: 792 FYIFSTPAKGTLIEI 806 STP +G+ + Sbjct: 831 IRTESTPGRGSTFRV 845 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 67/248 (27%), Gaps = 11/248 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQN-TWYGK 146 +D +G + E + + +G ++ + D++ + I + + + Sbjct: 501 VDDNGRIMESNPAFREMVGYSRDELGRLTYKDLTPESWHETEETILRTAVDTCGFSDVFE 560 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ + V + L P +R +R F IV A ++ + Sbjct: 561 KEYRRRDGSVVPVALRLHRYP----SRAGENYRYFAIVRDITDVKAIEADLRQAKETAET 616 Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + K + + + + E L + Sbjct: 617 ANRAKSDFLAKMSHDIRTPLHAVIGMTELTLGTLLSAQQRDALETVRESAASLLALINDI 676 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + + T ++ + + +L P++ + E Sbjct: 677 LDISRIEARKLDVAREDFDLRRTLAATVRAMRPQAAQKALFLGLAIAPAVPRFVTGDEVR 736 Query: 322 TPETVDKC 329 + + Sbjct: 737 VRQILTNL 744 >gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 865 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 117/617 (18%), Positives = 242/617 (39%), Gaps = 32/617 (5%) Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + E+Y + R +++ T DD ++ K L + Sbjct: 88 SIAIADTNERYVSANAVYAQQFHRSPSELLGGTIREMVGDDNYQSMKPHLDRAFSGEQST 147 Query: 272 QEDFHTINLNQYTKKQY-----FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 Q T +Q + + + + E + + Sbjct: 148 QSVAEATTDGVTTYRQVSYDPQLSADGQVTGVMIVAMDITDSKRRESDLRESNEFSRAIL 207 Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + P + G+L N + L + ++ S P+ + K + Sbjct: 208 ESSPDCVKVLNEEGDLMSMNAKGMCLMEIDDLEPFRNQAWWSY---WPEQAQGTVRKSLK 264 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 R + A T++ I E + + R++K+ Sbjct: 265 DARENGEGR-FEAECPTVK---GTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTTRRLHKQ 320 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++E +L +++ + + I++ +G++ N+ ED++ +PF + Sbjct: 321 ELEEREKRLHRVIDNMNSFVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCEAFWWSH 380 Query: 506 PSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---------YS 555 + + + +R +T + + + + S Sbjct: 381 DDQVAEQVKSSVQAAIRGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVV 440 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D+++ + + L A AE+ + KS FLA +SHEIRTP+T+I+G++++I ++ Sbjct: 441 ASGFDVTDRYEFERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI 500 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + I R+G +L ++ND+LD+SKIE+ M + E V+L + + +S++ Sbjct: 501 ----DEDTRSHVATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIEDVLSIM 556 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q+ A EK + IR + IP I AD + ++QI +N++ NA+ FT +G + ++ + Sbjct: 557 QVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAG-HVRVAVRAEQS 615 Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V V DTG+G+++ ++K +PF Q S GTGLGL +++ +V G+ Sbjct: 616 DRRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGE 675 Query: 792 FYIFSTPAKGTLIEIIF 808 S +G+ Sbjct: 676 ITARSRVNEGSCFSFCI 692 Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 31/431 (7%), Positives = 108/431 (25%), Gaps = 30/431 (6%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDS------ENTFVFDPIPRTVRFTWNIDAHG 93 + + + ++S Q + ++ F+P D + Sbjct: 43 RCDPERYRQSQESLQNSQPNPISIPVSTVNELHSNSLGMAHSFNPSIAIA------DTNE 96 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + +++G + ++ + H+ + + Sbjct: 97 RYVSANAVYAQQFHRSPSELLGGTIREMVGDDNYQSMKPHLDRAFSGEQSTQSVAEATTD 156 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 T ++ P S + + +G + + + ++ + E Sbjct: 157 GVTTYR---QVSYDPQLSADGQVTGVMIVAM--DITDSKRRESDLRESNEFSRAILESSP 211 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 V E+ D+ S + L + + + + + +++ + Sbjct: 212 DCVKVLNEEGDLMSMNAKGMCLMEIDDLEPFRNQAWWSYWPEQAQGTVRKSLKDARENGE 271 Query: 273 EDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPE 324 F + ++ NS E ++++ + +E E Sbjct: 272 GRFEAECPTVKGTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTTRRLHKQELEEREKRLHR 331 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 +D + + + + +D+ + +K Sbjct: 332 VIDNMNSFVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCEAFWWSHDDQVAEQVKSS 391 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK---ANQFPENMPQNGIEPEDVDTR 441 + + I + + ++F+P ++ + + D Sbjct: 392 VQAAIRGETSRFDI-AYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVVASGFDVTDRY 450 Query: 442 INKRKMEIEVM 452 +R ++ Sbjct: 451 EFERSLKDATD 461 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----- 139 F +D G L+E+++ +IG C+ ++ + + +K Sbjct: 339 FVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCE---AFWWSHDDQVAEQVKSSVQAA 395 Query: 140 -QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + I G + + +D++ +P+ + +V D + Sbjct: 396 IRGETSRFDIAYRIAGDSSRM-VDVSFVPVRDESGRDESGPPLYVVASGFDVTDRYEFER 454 Query: 199 RLDKKFSHLHEIKKG 213 L + + Sbjct: 455 SLKDATDAAEQANRA 469 >gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 1078 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 118/624 (18%), Positives = 216/624 (34%), Gaps = 33/624 (5%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 A L + + V I ++ T ++ Sbjct: 194 DARVDVLPAARELIFDAMPDPVIVLDAADRIRFINKAC------ERLVGHTSREVRGKEI 247 Query: 254 LKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L S + + + E L + L F Sbjct: 248 DAVFPGGLFPLSLRAHMEQFEIQVGSTLFEVHATWITDALDRRKGTLFHLSDITAEREAV 307 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E ++ + + + + N S G Sbjct: 308 NTLALRERQYRNVLENITVGVMLLNRDYVVRAWNRRMEEWFPGIS------WGTEGVRCV 361 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + L + A + E +M P + Sbjct: 362 EICKGPVLPCEECPLPPVFASGKTQRAEVRRQTKYGERIFSMVATPHL--DDEGVIRGVV 419 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + R ++E + ++ A++D +++I+ + + N A K G ED Sbjct: 420 VLLEDVTAERKATEELE----RYKFMVNASADFMSLISSDFRYEAVNDAFCKAHGKGRED 475 Query: 492 ILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + + T + Y+ + ++ G E + L + + Sbjct: 476 FVGHRVAELWGEETFRRKILPYIQRAFEGERVVVEDRFVFGLLGE-RDLEVSYNPYREGE 534 Query: 551 SSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + + DI+ +K L A++ AE+ + KS FLA +SHEIRTPL AI G S++ Sbjct: 535 RITHVAVVTRDITSYKDALRHLEDARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDL 594 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + R P E I S +L ++ND+LD+S+IE+G++ L P+ + V Sbjct: 595 LLLSRVSP----EVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVR 650 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + + A K + + +P + D ++QI +N+LSNA+ FT GG + +S Sbjct: 651 HTWEMFRPQAETKGLSFELHLSEGLPSEVNGDPVRIRQILINLLSNALKFTEEGG-VTLS 709 Query: 729 TT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T + + EV L V DTG+G+ +LE+ +PF Q +S R GTGLGL +++ + Sbjct: 710 VTGHRMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQL 769 Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808 + G + S +G+ Sbjct: 770 AEMMGGTVVVSSEVGRGSTFVCRL 793 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 42/370 (11%), Positives = 99/370 (26%), Gaps = 30/370 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA ++ I++ + +G+ + ++ G + D + P + + + + Sbjct: 218 LDAADRIRFINKACERLVGHTSREVRGKEI-DAVFPGGLFPLSLRAHMEQFEIQV----- 271 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G+ L+ ++ A I G F + + L R + + L Sbjct: 272 -----GSTLF---EVHATWITDALDRRKGTL-FHLSDITAEREAVNTLALRERQYRNVLE 322 Query: 209 EIKKGHSSVEKEKYDIFSQ---QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 I G + ++ + P + + + K VL E+ PL Sbjct: 323 NITVGVMLLNRDYVVRAWNRRMEEWFPGISWGTE--GVRCVEICKGPVLPCEECPLPPVF 380 Query: 266 ESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 S ++ E + ++ + + E Sbjct: 381 ASGKTQRAEVRRQTKYGERIFSMVATPHLDDEGVIRGVVVLLEDVTAERKATEELERYKF 440 Query: 325 TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V+ + S N +F D + ++ L P Sbjct: 441 MVNASADFMSLISSDFRYEAVNDAFCKAHGKGREDFVGHR--VAELWGEETFRRKIL--P 496 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + + R E L +++ P + + + + Sbjct: 497 YIQRAFEGERVVVEDR-FVFGLLGERDLEVSYNP---YREGERITHVAVVTRDITSYKDA 552 Query: 444 KRKMEIEVMQ 453 R +E Q Sbjct: 553 LRHLEDARRQ 562 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 72/251 (28%), Gaps = 14/251 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT 142 F I + + +++ K G +G R+ ++ +I + + Sbjct: 448 FMSLISSDFRYEAVNDAFCKAHGKGREDFVGHRVAELWGEETFRRKILPYIQRAFEGERV 507 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 ++ + G ++++ P R + + D + + Sbjct: 508 VVEDRFVFGLLGE---RDLEVSYNPYREGER-ITHVA--VVTRDITSYKDALRHLEDARR 561 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + K + ++P + + + L+ ++ L K Sbjct: 562 QAEEANRAKSAFLASMSH-----EIRTPLNAITGMSDLLLLSRVSPEVEEGLAIIK-DSA 615 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + D I + ++ + + ++E + ++ Sbjct: 616 GTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELHLSEGL 675 Query: 323 PETVDKCPIPF 333 P V+ P+ Sbjct: 676 PSEVNGDPVRI 686 >gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 856 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 115/617 (18%), Positives = 240/617 (38%), Gaps = 32/617 (5%) Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + E+Y + R +++ T DD ++ K L + Sbjct: 79 SIAIADTNERYVSANAVYAQQFHRSPSELLGCTIREMVGDDHYQSMKPHLDRAFSGEQST 138 Query: 272 QEDFHTINLNQYTKKQY-----FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 Q T +Q + + + + E + + Sbjct: 139 QSVAEATTDAVTTYRQVSYDPQLSADGQVTGVMIVAMDITDSKRRESDLRESNEFSRAIL 198 Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + P + G+L N + L + ++ S P+ + K + Sbjct: 199 ESSPDCVKVLNEEGDLMSMNAKGMCLMEIDDLEPFRNQAWWSY---WPEQAQGTVRKSLK 255 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 R + A T++ I E + + R++K+ Sbjct: 256 DARENGEGR-FEAECPTVK---GTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTARRLHKQ 311 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++E +L +++ + + I++ +G++ N+ ED++ +PF + Sbjct: 312 ELEEREKRLHRVIDNMNSFVGIVDLDGVLQEINQTAINAASVAREDVIGRPFWEAFWWSH 371 Query: 506 PSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---------YS 555 + + + +R +T + + + + S Sbjct: 372 DDQVAEQVKSSVQAAIRGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVV 431 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D+++ + + L A A++ + KS FLA +SHEIRTP+T+I+G++++I ++ Sbjct: 432 ASGFDVTDRYEFERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI 491 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + I R+G +L ++ND+LD+SKIE+ +M + E V+L + + + ++ Sbjct: 492 ----DEDTRSHVATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIEDVLRIM 547 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733 Q+ A EK + IR + IP I AD + ++QI +N++ NA+ FT +G + ++ Sbjct: 548 QVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAG-HVRVAVRAEQI 606 Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V V DTG+G+++ ++K +PF Q S GTGLGL +++ +V G+ Sbjct: 607 DLRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGE 666 Query: 792 FYIFSTPAKGTLIEIIF 808 S +G+ Sbjct: 667 ITARSRVNEGSCFSFCI 683 Score = 74.7 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 36/415 (8%), Positives = 105/415 (25%), Gaps = 26/415 (6%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110 Q N +V+ + F+P D + + + Sbjct: 51 QLNLISIPVSTVNELHSNSLGMAHSFNPSIAIA------DTNERYVSANAVYAQQFHRSP 104 Query: 111 FKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 +++G + + V D + H+ + + T ++ P Sbjct: 105 SELLGCTIREMVGDDHYQSMKPHLDRAFSGEQSTQSVAEATTDAVTTYR---QVSYDPQL 161 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 S + + +G + + + ++ + E V E+ D+ S + Sbjct: 162 SADGQVTGVMIVAM--DITDSKRRESDLRESNEFSRAILESSPDCVKVLNEEGDLMSMNA 219 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT----INLNQYTK 285 L + + + + + +++ + F + Sbjct: 220 KGMCLMEIDDLEPFRNQAWWSYWPEQAQGTVRKSLKDARENGEGRFEAECPTVKGTPKWW 279 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGNL 341 ++ NS E ++++ + +E E +D + + Sbjct: 280 DVIVTPVRRNSGEVKQFVAVSRDVTARRLHKQELEEREKRLHRVIDNMNSFVGIVDLDGV 339 Query: 342 FY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 N + + D I + +K + Sbjct: 340 LQEINQTAINAASVAREDVIGRPFW-EAFWWSHDDQVAEQVKSSVQAAIRGETSRFDI-A 397 Query: 401 HTIQWNRENSLAMTFIPFEK---ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + I + + ++F+P ++ + + D +R ++ Sbjct: 398 YRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVVASGFDVTDRYEFERSLKDATD 452 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 10/135 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----- 139 F +D G L+EI++ +IG + ++ + + +K Sbjct: 330 FVGIVDLDGVLQEINQTAINAASVAREDVIGRPFWE---AFWWSHDDQVAEQVKSSVQAA 386 Query: 140 -QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + I G + + +D++ +P+ + +V D + Sbjct: 387 IRGETSRFDIAYRIAGDSSRM-VDVSFVPVRDESGRDESGPPLYVVASGFDVTDRYEFER 445 Query: 199 RLDKKFSHLHEIKKG 213 L + + Sbjct: 446 SLKDATDAADQANRA 460 >gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855] gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855] Length = 904 Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats. Identities = 133/749 (17%), Positives = 255/749 (34%), Gaps = 53/749 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIG----DLLKRQ 140 +D G + + + + + + + G +V D +L+ Sbjct: 176 RLDQEGTFVQANGRVAEVLRSSEDDICGRTYAEVEWTLTPFGADTMPEEAVPFNHVLETG 235 Query: 141 NTWYG--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + WP +GT + + + P+ + + G + + Sbjct: 236 ASVRDAELSVQWP-DGTQRVLSV--SGAPLQAE-GKGPGA--VFHLRDITDRVRREQTLR 289 Query: 199 RLDKKFSHLHEIKKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 R+ +++ L + E ++ + Q + V T + D++ + Sbjct: 290 RVKERYQTLVDNFPDGGVFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAR 349 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 +L ++ + + ++ + + L+ + Sbjct: 350 EHVTYF----RRALDGEKHVYEQEYQGQHYRVQTLPIRGKAGDVISGLAVSQDITERKER 405 Query: 316 DEGENLTPETVDKCPIPFFVYS--------HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + F+ NP + + + Sbjct: 406 ERRLRQSETLFQNAQDALFLLDVEGEADGRTFRYRRVNPVYEEQFGHAEAEIRGR----- 460 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 +P+ + +M+ + R ARL+ + E Sbjct: 461 ----SPREVFGGDARRLMMEKCRRCVQHREARLYEETISLEGRETYWKTRIAPVVVEGRV 516 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 GI + + + +E + E S G + + + ++ GY Sbjct: 517 RQIVGITRDVTEQHRRQEALERQNDLFDRAQEIASVGAWEYDARADASNWTKKAYEILGY 576 Query: 488 PVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P + D + + L + L LE +++ RI + Sbjct: 577 PPDADPNPSTAVGYYHPEDQPRVQKALRDALQEGKPSDLEVRV---AAGDEVRWARIRGE 633 Query: 547 KLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + DI+E KQ + L AK+ AE+ S KS LA +SHEIRTPLT+I Sbjct: 634 PQWEDGEVVRVRGTIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSI 693 Query: 604 IGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 IGF+E + + + YA I++SG +L+ + +L++SK+E+G+M L P Sbjct: 694 IGFAEATNAEAKELDLPDDSPLPNYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARP 753 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA-LNILSNAIHFTP 720 V L E ++ A EK +L++ AD V QI N+LSNA+ +T Sbjct: 754 VDLVEEAEAVAEELRPRAEEKEVLLQLETEAA--WAEADKGGV-QILARNLLSNAVKYTE 810 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +GG++ + T + V V DTG+GM E +PF Q +GTG+GL + Sbjct: 811 AGGRVRLRT-YREEGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAV 869 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K G + + +GT I + P Sbjct: 870 TKETTKQMEGSIDVETEKGEGTRITVWLP 898 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 10/180 (5%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + P K + + + + + L ++E + I + Sbjct: 118 TAGGLFLTPAPKLQPPVVLAIMVVVGLTVSVSLRGRMTIRRQRDLLDRLVETSPGAIVRL 177 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLR 522 ++EG + N V+++ +DI + + +T +L Sbjct: 178 DQEGTFVQANGRVAEVLRSSEDDICGRTYAEVEWTLTPFGADTMPEEAVPFNHVLETG-A 236 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + L + L + DI++ + + L K+ + Sbjct: 237 SVRDAELSVQWPDGTQRVLSVSGAPLQAEGKGPGAVFHLRDITDRVRREQTLRRVKERYQ 296 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 42/469 (8%), Positives = 111/469 (23%), Gaps = 39/469 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144 + + + ++ G + G D+ + L + Y Sbjct: 307 VFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDGEKHVY 366 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + G + V LPI + + G + + ++ + F Sbjct: 367 EQEYQ----GQHYRVQT----LPIRGKAGDVI--SGLAVSQDITERKERERRLRQSETLF 416 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + + F + P D + Sbjct: 417 QNAQDALFLLDVEGEADGRTFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMME 476 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + E+ ++ + K + + + + E Sbjct: 477 KCRRCVQHREARLYEETISLEGRETYWKTRIAPVVVE-GRVRQIVGITRDVTEQHRRQEA 535 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKL 375 + D+ + S G Y + K+ + + + Sbjct: 536 LERQNDLFDRAQE---IASVGAWEYDARADASNWTKKAYEILGYPPDADPNPSTAVGYYH 592 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ L + + + + + + + E + G Sbjct: 593 PEDQPRVQKALRDALQEGKPSDLEVRVA--AGDEVRWARIRGEPQW-EDGEVVRVRGTIQ 649 Query: 436 EDVDTRINKRKMEIEVMQLC-------SILEATSDGIA--IINREGIILSTNRAVSKLFG 486 + + + +R + + S+L S I + + G +TN +L Sbjct: 650 DITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKEL-- 707 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + D P L + + + L +L+L + E + Sbjct: 708 -DLPDDSPLPNYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVD 755 >gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 606 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 94/435 (21%), Positives = 188/435 (43%), Gaps = 34/435 (7%) Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + R+ + N +P ++ E E++ ++ Sbjct: 197 RIARGITRPIE-RITRVARQMANQQYAARVPEAGNDEVGELARTINRMAENLQIQMQH-- 253 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +L +LE G+ ++++ G I NR+ + GY ++L K + L+ Sbjct: 254 IRENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSY---LDAGFQ 310 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564 L + + R + + + +E++L + + + +HDI+ Sbjct: 311 LEFTALLADAIETHTR--VREELMLHFPQEQILEVHVSPIVQGDGQRKGVLVVLHDITAV 368 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +S+F+A VSHE++TP+ A+ GF+E + Sbjct: 369 RRLE--------------RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMAR 412 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + + ++ D+L++SKIES ++ L F PV ++ V +I +++ A +K I Sbjct: 413 SFLQIIYDESDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHI 472 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEV 737 + + N + I AD ++QI +N+LSN I +TP GG++ I NE + Sbjct: 473 TLESCVENEL-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERM 531 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +R+ DTG+G+ +L + + F ++ ++ GTGLGL + K + + + G + S Sbjct: 532 RIRISDTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESE 591 Query: 798 PAKGTLIEIIFPLYD 812 KGT I P+ Sbjct: 592 AGKGTTFNIELPVIQ 606 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 15/168 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + ++ +G + +++ D ++ + D ++ T + Sbjct: 275 VDQRGTITLVNRSAEDILGYSSHELLNKSYLD--AGFQLEFTALLADAIETH-TRVREEL 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +++ PI + + G ++H +RL++ S Sbjct: 332 MLHF---PQEQILEVHVSPIVQGDGQRKGV--LVVLHDITAV-------RRLERIRSEFV 379 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 F++ L K S + + D L Sbjct: 380 ANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNR 427 >gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity [Allochromatium vinosum DSM 180] Length = 1994 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 120/757 (15%), Positives = 247/757 (32%), Gaps = 46/757 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + + + G IG L + L + ++ D L+R + G++ Sbjct: 736 VDREGRITRFNALAVRIFGI-VDDDIGNHLVGIPCHLTL---PYLPDCLERVVS-QGESV 790 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + + + + P + G + + +++F + Sbjct: 791 IERVHQGDFHYLMQID--PYRDEFGQVVGA--VLNFSDISELHRAESAHAGSEQRFRQVW 846 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 E + E + P + V L + + Sbjct: 847 ESANEGMLLTDESGCMVLVNPALERMFGYGPGELVGQPVEILVPESRRIRHRIDRAAFAA 906 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317 + ++ D G L+ E Sbjct: 907 GSERGRAMDHARDLQGRCKEGTLFDVAIGLSNIAMDGGRFTLASVEDITERKRAERALRE 966 Query: 318 GENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E +D + ++ + Y + L K + Sbjct: 967 SEQRLRLALDAAQAGTWEWNLDSDRNYWSGRNWELYGLKQDECEPSYQA----WRGSVHP 1022 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ ++ + + E + + A+ + G + Sbjct: 1023 EDLERVERIIREAVEQETGFEVEWRVKRPPGEPTRWLLSRAQPIASDSDQPRRYIGAVID 1082 Query: 437 DVDTRIN--KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL 493 D + + + E+ L ++L+ + G N EG + ++FGY +++ Sbjct: 1083 ITDQKEAVQRAALAGELKILQTLLDTSFAGYFDWNIAEGT-EYLSPTFKRMFGYADDELP 1141 Query: 494 RKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIK 546 P + + + + K+ + + + + Sbjct: 1142 NTPESWQRLIFPEDLPGVFEVYERHVRSHGSVPYHNEVRYRHKDGRTIWVICAGLVVDWT 1201 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 DI+ KQ + LS A+ A + KS FLA +SHEIRTP+ A++GF Sbjct: 1202 PDGEPRRLIGYHIDITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGF 1261 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++ + P + I +G +L ++ND+LD SKIE+G + + P L E Sbjct: 1262 CYLLEQRALDPTS----ADLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSE 1317 Query: 667 AVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++ A +K + + + I ++ D ++Q+ +N+L NAI FT G ++ Sbjct: 1318 LLDTLAGIMTAAAGDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTARG-EV 1376 Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + ++ VRDTG+G+ F Q NS R GTGLGL ++ Sbjct: 1377 ELRVEQVAEHGDRLDLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAIS 1436 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + +V G+ + ST +G+ L + D Sbjct: 1437 QRLVHMMGGRLELESTLGQGSAFYFTLALQRDPNAPD 1473 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 41/446 (9%), Positives = 114/446 (25%), Gaps = 43/446 (9%) Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + + +++ + + + + E +L+ Sbjct: 469 RRRDSVVSRPPRLARYQPPMPLGYRLSARSRSQMAPNPLRDAALDELVRAYDLSAVLVNT 528 Query: 288 YFGTLQ--NNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDKC---PIPFFVYSHGNL 341 F LQ ++K F + S E + I L Sbjct: 529 NFEPLQFFGHAKRYFALPDDTSDFSIFSLCLPELRTELKSLGYRLLQEQIDVLPGIGMRL 588 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 A+ + + + + L+ +L ++ D Sbjct: 589 RIADQRVRIRPVARRIRLSNEQLTQAFLIVFEELPPDHWGVETEAASLDAEREDDEITRL 648 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL------- 454 + + + + Q I+ + + +++ +L Sbjct: 649 RQELAETREYLQSVLDQRELAHEELQSLQEEIQVSTEELQTANEELQSSNEELTTLNDEL 708 Query: 455 --------------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +I + + +++REG I N ++FG V+D + Sbjct: 709 RLKTNESTELSTTLANIQNSIRTALIVVDREGRITRFNALAVRIFGI-VDDDIGNHLVGI 767 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSS--CYSLT 557 T + L ++S + + ++I + F L Sbjct: 768 PCHLTLPYLPDCLERVVSQGES------VIERVHQGDFHYLMQIDPYRDEFGQVVGAVLN 821 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DISE + ++ + +++ + ++ + + T + + + FG Sbjct: 822 FSDISELHRAESAHAGSEQRFRQVWESANEGM------LLTDESGCMVLVNPALERMFGY 875 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVND 643 + + + ++ Sbjct: 876 GPGELVGQPVEILVPESRRIRHRIDR 901 >gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 122/582 (20%), Positives = 227/582 (39%), Gaps = 40/582 (6%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----------PS 310 L + + + + + + + +++ L N Sbjct: 86 LANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRMLGAHNDITEYKQQQLALEE 145 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLS 367 A + E+ V+ P+ + + +A+ + L Y S + + Sbjct: 146 AQATLRQSEDKYRTLVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWV 205 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 ++ A L A + ++ + R + +Q Sbjct: 206 DVIVAEDLPLVEAAVQHAIKAREKYTVEYRIR----HQKGHVIWVSETGSAQDYDQNGHP 261 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486 +G+ + D ++++ + + + E + GIA+ + G L N AV++ G Sbjct: 262 AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAG 321 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y E+ + + L + + EK + K+ + + Sbjct: 322 YTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI--RKDGSRYPVLLNGF 379 Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 K + DISE + A++ AE + KS+FLA +SHEIRTP+ AI Sbjct: 380 KTTTPEGKAVIWSIIQDISE-------IKKAQEAAEAANRSKSEFLANMSHEIRTPMNAI 432 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG ++ + P PR +Y I S +L ++ND+LD SKIE+GK+ + P Sbjct: 433 IGLGQLALKSQ--PPPPPRLHDYLEKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFD 490 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 L E +++ L+ A EK + + + + P +++ D + Q+ +N+ SNAI FT G Sbjct: 491 LSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRLGQVLINLTSNAIKFTQQG 550 Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++ IS + + VRDTG+GM+ ++E+ +PF Q + + GTGLGL Sbjct: 551 -EVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGL 609 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 +A +V G+ + STP G+ L PH + Sbjct: 610 SIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHKAL 650 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 27/386 (6%), Positives = 70/386 (18%), Gaps = 37/386 (9%) Query: 98 ISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTLWPIE 153 +S + + +G + D+ + + + L + + ++ Sbjct: 44 MSPKFWQILGYDPSTKQHLSSEWQDIINQDDLKATTENLEKHLANPDHPFDQVVRYRHLK 103 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G V + L I + R G + + + + + Sbjct: 104 GHT--VWVRCRGLAIRDKQGRPI--RMLGAHNDITEYKQQQLALEEAQATLRQSEDKYRT 159 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---------------TEYYAHKDDVLKTEK 258 +P L L + +D L Sbjct: 160 LVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAA 219 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSA 313 + + + + YL + Sbjct: 220 VQHAIKAREKYTVEYRIRHQKGHVIWVSETGSAQDYDQNGHPAYLDGVIADITDRVQAQK 279 Query: 314 YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E + P+ + G N + Y + LS Sbjct: 280 EISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEE----FKQLSYFDV 335 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQ 430 P + + + I+ + + + Sbjct: 336 TPMEYMEDEKRQLESMEKIGRYGPFEKEY--IRKDGSRYPVLLNGFKTTTPEGKAVIWSI 393 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456 E + + + Sbjct: 394 IQDISEIKKAQEAAEAANRSKSEFLA 419 Score = 42.7 bits (99), Expect = 0.26, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI-DPNNHIGDLLKRQNTWY 144 +DA + S+ + G + + + G DV + + +K + + Sbjct: 172 EVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAAVQHAIKAREKYT 231 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +G ++V +A Y +N + G ++ + + KF Sbjct: 232 VEYRIRHQKGHVIWVSETGSAQ-DYDQNGHPAYLDG--VIADITDRVQAQKEISAQEAKF 288 Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E+ ++ + + P + L+ + + ++ EK L Sbjct: 289 RGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQL 348 Query: 262 LTSE--ESSLPEQEDFHTINLNQYTK 285 + E P ++++ + ++Y Sbjct: 349 ESMEKIGRYGPFEKEYIRKDGSRYPV 374 >gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 919 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 133/809 (16%), Positives = 273/809 (33%), Gaps = 87/809 (10%) Query: 71 ENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122 E F R + + G + ++ + + ++ + G D+ Sbjct: 48 EQVFTLKGADHPFRVLMEDMSEGALTLSSDGIVLYANQRFAEMLKSHLNLVAG---SDLV 104 Query: 123 DILHIDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGF 178 + LL+ G+ L +G VP + P+ F Sbjct: 105 QWIQSGHRCRFYSLLQGQSGQRSSGEINLVDSQG--ALVPTQFSLTPLETQDIQGAF--- 159 Query: 179 RGFGIVHVN------RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 +V + + ++ E + + + Sbjct: 160 --CAVVTDLSEHKRLQEIKAAEQTARARAQEAERYSETLESLVRDLNKARKGLKENQNFL 217 Query: 233 HLRM------------------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + N+V H + P Sbjct: 218 ESVLDTIQDGIVVLDKDMNIIKTNRVIQNLYSLDHSRQEKCYTAFHGRREPCDLCPTSRA 277 Query: 275 FHTINLNQY------------TKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEG 318 T NL T + + +++ + + Sbjct: 278 MQTGNLEVEEIPIIQNGVETGTMEVFAYPMRDEQGNITGVVEYARDISKVKRNRQALKRS 337 Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + L T + I + + + + Y G + LDA D Sbjct: 338 QALLSRTQEIADIGSWEMDLDKDVLTWSDQVYRMFGYAPQSF---QPGYQSFLDAVHPED 394 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ++ L ++ + + + + + + G + Sbjct: 395 RESVHKKYLESMLDVSQGFEFEHRIVRADSQEVRYVREQGLHELDDAGRVVLSYGAIQDI 454 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ K+ + ++++ + + I + + EG + N A GY E++L Sbjct: 455 AENKLAADKLREREEKYRALVDQSVEMIYLHDMEGRFIEVNAAAVSNTGYTREELLSMNV 514 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYS 555 + + T+E K+ ++ + + I K+ Sbjct: 515 FDLHTDQLSQEEVKNYWQSMLPGQSMTVETE--HHKKDGSVIPVEVKIGKIYYSNQEHIM 572 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI+E KQ +L A++ AE+ + KS FLA +SHEIRTP+ A++GF+ +++N Sbjct: 573 ALVQDITERKQVHQEL-IARRSAEEANRAKSRFLANMSHEIRTPMNAVLGFARMLEND-- 629 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + A I RSG+ +L ++N +LD+S+IE+G+ LH E L + + +++ Sbjct: 630 -PALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLIDKLMTMF 688 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS----- 728 +L A +K + + ++P + AD + QI N+LSNAI FT +G ++ IS Sbjct: 689 ELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKLTISSKPPG 748 Query: 729 ---TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 T + ++ +V+D+G G+T + + +PF Q N ++ GTGLGL +++ Sbjct: 749 PADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFFQTQN--KMHPGGTGLGLTISREY 806 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 G + S +G+ + P+ Sbjct: 807 AVLMGGNLTVSSQEGRGSCFRLEIPVKRA 835 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 77/249 (30%), Gaps = 25/249 (10%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + D ++ ++E S+G ++ +GI+L N+ +++ Sbjct: 35 GEVDALVVSTDQGEQVFTLKGADHPFRVLMEDMSEGALTLSSDGIVLYANQRFAEMLKSH 94 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + + +++ L + L+ + + L Sbjct: 95 LNLVAGSDLVQWIQSGHRCRFYSLLQGQSGQRSSG----EINLVDSQGALVPTQFSLTPL 150 Query: 549 PF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK--SDFLARVSHEIRTPLTAI 603 + + D+SE K+ + + + + + S+ L + ++ A Sbjct: 151 ETQDIQGAFCAVVTDLSEHKRLQEIKAAEQTARARAQEAERYSETLESLVRDLN---KAR 207 Query: 604 IGF--SEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLDIVNDL--LDISKIESGKMNL 657 G ++ + + + + N I + ++ +L LD S+ E Sbjct: 208 KGLKENQNFLESVLDTIQDGIVVLDKDMNIIKTN-----RVIQNLYSLDHSRQEKCYTAF 262 Query: 658 H--FEPVSL 664 H EP L Sbjct: 263 HGRREPCDL 271 >gi|160877439|ref|YP_001556755.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862961|gb|ABX51495.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269641|gb|ADT96494.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1629 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 121/782 (15%), Positives = 269/782 (34%), Gaps = 68/782 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 D G + ++ + G +G C + I ++L + + T Sbjct: 363 DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTSLNRIT 422 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203 + +G++L A+PIY + + +G + + L L+++ Sbjct: 423 SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------KNKVSSLTE 245 + + + D +QQ + ++ T Sbjct: 479 VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYPREQLVGKTH 538 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYL 303 + + + + + ++ G + + + ++ Sbjct: 539 AILQSGEHDASFWQSMWQQINAGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + GN+ N L Y + Sbjct: 599 ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKP------------VMLYRSDRTCIAASARLHTIQW 405 + I + L + + + + R++ + R T Sbjct: 659 EMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFIYKARAEGS----ETRNWTYVR 714 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + ++ + E + GI + + ++ + L E GI Sbjct: 715 KDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGI 774 Query: 466 AIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 N G L N + ++ + + + +++ + + + + L + Sbjct: 775 WTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTA 834 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + + + +++ DI+E +Q + L AK+ A+ Sbjct: 835 KYDPIFRVVRTDGSIRFVQAAAQVERDKQGHAIRVIGINLDITEQQQLEESLREAKQEAD 894 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S+ KS FLA +SHEIRTP+ A++G ++I+ + +Y N + +L Sbjct: 895 AASAAKSAFLANMSHEIRTPMNAVLGMLQLIQYTSLSR----QQQDYVNKTQTAAKSLLG 950 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 ++ND+LD SKI+ GK+ L P S++ + + ++ +K + + +P +L Sbjct: 951 LLNDILDFSKIDVGKLILDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLL 1010 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEK 755 AD ++QI +N+ NA+ FT G I+ I + V + + DTG+G+++ ++E+ Sbjct: 1011 ADQLRLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIER 1070 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDT 813 F Q +S R GTGLGL ++K ++ + ++ S G+ FP+ Sbjct: 1071 IFTGFEQAESSTSRRFGGTGLGLAISKRLIGLMGSELHVTSKVGVGSRFWFDMTFPIIQV 1130 Query: 814 SH 815 Sbjct: 1131 EE 1132 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 113/426 (26%), Gaps = 35/426 (8%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + EF G RGFG + RV + A ++ + ++ + E+Y I Sbjct: 92 TRDVDHEFPGARGFGFIR--RVPSPDEAAFIARARQDDWPDFNIRQLNAHDGERYVIEYI 149 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + P R K V AH+ + + + + + Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 + ++ P N Sbjct: 207 IY--------------------RTGLVPKTQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + DI A + + + D + Sbjct: 247 MTKLL----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRKWQIEVIAYPSFI 302 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ + + I + + ++ + + + S+LE + DGI Sbjct: 303 KSLHLNQPSLVLLSGSLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G I S N+ +LFGY L + + + L + L + Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTS-LNR 420 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583 IT ++ LS + T+ DI+ + + + E++ + Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480 Query: 584 HKSDFL 589 ++ L Sbjct: 481 KRTHAL 486 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 39/390 (10%), Positives = 104/390 (26%), Gaps = 31/390 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D +G + E+++ + G +++G + D + + + +W+G+ Sbjct: 509 TDPNGVILEVNDNFCRISGYPREQLVGKTHA-ILQSGEHDASFWQSMWQQINAGQSWHGE 567 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKF 204 T + + P++ + F I +R LG L Sbjct: 568 ICNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVL 625 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E+ + V+ + + T H + + L Sbjct: 626 DAASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAE 685 Query: 265 EESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + F + +Q+ ++++ E YL Sbjct: 686 YGKDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVD 745 Query: 309 PSLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 SL + N + + + + ++ GN N + Y + + Sbjct: 746 ISLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQ 803 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G D+ A L + ++ + + + + ++ Sbjct: 804 GLTYEHWSMRVHPDDIAFADAKLKGAVEGTAKYDPIFRVVRTDG-SIRFVQAAAQVERDK 862 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + GI + + + + + + Sbjct: 863 QGHAIRVIGINLDITEQQQLEESLREAKQE 892 >gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1033 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 115/744 (15%), Positives = 245/744 (32%), Gaps = 45/744 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 W + +++ +G ++ L D+ + ++ ++ + + Sbjct: 29 VWYLVNEYTYGAVNKAHADFLGMQVQEVSYASLYDLFPVDVVEVCRPGNREVFETGESLQ 88 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + W + + + + P R+ + + KF Sbjct: 89 TEE--WVPDASGELRLLSIKKSPGLDRDGRVKYV--VCSADDITDQRRLQDSLAESEDKF 144 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L E ++ + D +L + T A + Sbjct: 145 RLLAENAPMGIALHELVLDKHGNPVDYRYLDVNQGFERHTGLKASQVTGRTAG-QVFGRQ 203 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQ----------NNSKESFEYLSHRNHPSLSAY 314 ++ + + + ++ +L ++ + ++ + Sbjct: 204 QDPPFLDTYARVVLGGRSVSFEEEVESLGRSFLINAYKVGLNRFATVFMDVSQRRQATRE 263 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + + +L + N F + Y +++I + Sbjct: 264 AEVRRSHFESIFENTKDAMVFFDTSHLIFNINSRFTAMFGYT-LEEIRGKQVNRVVDPER 322 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D + + + + + E + I Sbjct: 323 LADDYISSSVL-------EGENVEKETVRYCRDGQPLDVLIKG--GPVYVAGEIVGGYSI 373 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + +R++ + L I+ D +AI + I N+A + E + Sbjct: 374 YSDISGRKQAERELTKQNQLLEGIINGIPDILAIQYPDHSIKRYNQAGYQALNKSPEQVA 433 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + E L+ Q +EK + + + Sbjct: 434 GRKCFELI-GRDRECEVCATREALNTGTLQQVEKYVPELD-----VYMDCRSNPIFNEQG 487 Query: 554 YSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 L + DI++ K+++ +L AK+ AE S KS+FLA +SHEIRTP+ I+G E+ Sbjct: 488 EILYIIEQLRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEM 547 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + + S + I+ND+LD+SK+E+GK+ + + Sbjct: 548 VSAR----TDDEESRRLMKMTLESARSLQQIINDILDLSKVEAGKLEIEHQEFDPQSLFK 603 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727 + L + A EK I ++ A IPR + D ++Q+ N++SNA+ FT G I + Sbjct: 604 RVMDLYSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVILRV 663 Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ + V DTGVG+ L + F Q ++ + +GTGLGL ++ +V Sbjct: 664 RPVQAASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISNRLV 723 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 G S P G++ P Sbjct: 724 QMMGGDIQAQSIPGAGSIFSFSLP 747 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 55/160 (34%), Gaps = 4/160 (2%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + ++ +L+ + + + E + N+A + G V+++ Sbjct: 3 DRNKPEDELRRSEASQRILLDNIATQVWYLVNEYTYGAVNKAHADFLGMQVQEVSYASLY 62 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 + V E+ E+ ++ E +LLS++ Sbjct: 63 DLFPVDVVEVCRPGNREVFETGESLQTEEWVPDASGELRLLSIKKSPGLDRDGRVKYVVC 122 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + DI++ ++ ++ L+ ++ ++ + HE+ Sbjct: 123 SADDITDQRRLQDSLAESEDKFRLL--AENAPMGIALHEL 160 >gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1203 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 122/571 (21%), Positives = 210/571 (36%), Gaps = 37/571 (6%) Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 P+ E+ + F ++ KQY L ++ + ++ R Sbjct: 362 SAEPIKPPEKITQGWGPWFQLVSRIFEENKQYTRHLAEQNRRLDKLVAQRTERLKETTER 421 Query: 317 EGE--NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E L +D P F G N S + Y + + L+ + Sbjct: 422 REEEYALLRSLLDSIPEAIVFKDKDGRYLGCNKSAERMLGYTENEIVGQY--ADALIPSE 479 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + A +L R + + + N+ E + + Sbjct: 480 QAVRIRAEDERVLANR------VPLRYQEKVDFAGKPVLLDTLKIPFYNRRDELLGLIAV 533 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED 491 + + ++ + + ++A DG+ ++ E II N A + GY + Sbjct: 534 WRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPAYYSMLGYKSNE 591 Query: 492 --ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----II 544 L + + + + E L+ + T + K + L + Sbjct: 592 FPALVSTIDELIHPDDRIRVEEHRNEYLNNPI-GTYDVEFRMLGKSGEYHWLLSRGRVVE 650 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 T DI+ K+ + + AK+ AE + +KS+FLA +SHEIRTP+ AII Sbjct: 651 FTPTNQPKRMVGTHKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAII 710 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++ + + +Y D S + +L I+ND+LD SKIE+GK+ L L Sbjct: 711 GMLQLAQRTSLTL----QQKDYLEKADFSAHSLLRIINDILDFSKIEAGKLELERVAFPL 766 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 D+ + A+ L L A EK + + IL D + Q+ +N+LSNA+ FT SG Sbjct: 767 DKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTKSG- 825 Query: 724 QIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 I E + VRDTG+G++ + F Q S + GTGLG Sbjct: 826 --EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLG 883 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L ++K +V G + S G+ Sbjct: 884 LSISKHLVSMMGGTMQVESEMGVGSTFSFTI 914 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 33/309 (10%), Positives = 84/309 (27%), Gaps = 15/309 (4%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLL 137 + D G ++ + +G +++G + +L Sbjct: 434 DSIPEAIVFK-DKDGRYLGCNKSAERMLGYTENEIVGQYADALIPSEQAVRIRAEDERVL 492 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 + + ++ V +D +P Y+R E G + R L Sbjct: 493 ANRVPLRYQE---KVDFAGKPVLLDTLKIPFYNRRDELLGL--IAVWRDVTREYESAEQL 547 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252 ++ + ++ G + I + L K+ + S + H DD Sbjct: 548 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTIDELIHPDD 607 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 ++ E++ +F + + + ++ + E + Sbjct: 608 RIRVEEHRNEYLNNPIGTYDVEFRMLG---KSGEYHWLLSRGRVVEFTPTNQPKRMVGTH 664 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + ++ + + F AN S + T ++ + ++L Sbjct: 665 KDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTLQ 724 Query: 373 PKLSDNNAI 381 K A Sbjct: 725 QKDYLEKAD 733 >gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293] Length = 558 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CIAT 652] Length = 1126 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 129/718 (17%), Positives = 264/718 (36%), Gaps = 50/718 (6%) Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 SD + + L++ + G + +G L V + +R+ +G Sbjct: 131 SDPGSAADLAQVREALEKLDQPIGI---FAADGRPLVV---------NAAHRKGAGPAPA 178 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G ++ AL L+ + H + ++ R +++ Sbjct: 179 GDSAWGDSVSELDALRTVLEDLPVAVFVRDDQHRLI------YANKYYETFSGRARSEYL 232 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 +TE+ + + L + + + + + + + + + Sbjct: 233 GMTEHEMFGPEGAEPIYQENLLALRDGISVELESEMPSKGGHVYPVISRVNRVITADGRT 292 Query: 302 YLSHR------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348 Y+ + + + PI + + + Y N F Sbjct: 293 YVVGSFSDISPLKEREKALIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEF 352 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI--AASARLHTIQWN 406 + + D + + + +L + + + R + AA + W Sbjct: 353 YSIWELPREDGFDGRPFIDVIRRNHELGRYDGTRTPEELYAFRKHLFEAAEPEPIEVGWA 412 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 S+ + + + + + +E + A S G+A Sbjct: 413 GGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLA 472 Query: 467 IINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I+ ++GII +N A++ + P + + +F + +IL Sbjct: 473 IV-QDGIIKMSNEAMADILQIPPHYIEAGQGWLGMFEFCAARGDFHDAAADILEGWRANI 531 Query: 525 LEKI---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + T+ E+ +++ + + D++E K + +L AE Sbjct: 532 AARQPISTVFHVGGERWVNMDATVS---TGQHWVALFTDVTELKSREEELRELLSRAEAA 588 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS+FLA +SHEIRTP+ ++G +E++ R + + I +SGN +L I+ Sbjct: 589 DRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT----RQKTFIDIIVKSGNALLTII 644 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD SKI++G+M L + EAV + +L+ +A EK I + A ++P ++ D Sbjct: 645 NDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGD 704 Query: 701 LRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAM 757 +QI N++ NA+ FT G + + + E++ +R+ DTG+G+ +LE Sbjct: 705 AGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVAGGEIMANIRIEDTGIGIPEEKLESVF 764 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 F Q+ S R EGTGLGL + +VD G + S +G++ + P + Sbjct: 765 DKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGEGSVFTVNLPFAVAAA 822 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 54/443 (12%), Positives = 121/443 (27%), Gaps = 47/443 (10%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 I +R D +R DK+ L + ++ + ++ Sbjct: 41 IGRRSRELFDRPEEEEREDKERRALVFGTEENAICFDAASLNHERIQIESFSPSPERIYV 100 Query: 243 LTEYYAHKDDVLKTEKYPLLT-------------SEESSLPEQEDFHTINLNQYTKKQYF 289 L + A + + S +E ++ Sbjct: 101 LGIFEARDRRAVGNKGIGGSPQTVNDNGIASDPGSAADLAQVREALEKLDQPIGIFAADG 160 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348 L N+ S + ++ P+ FV L YAN + Sbjct: 161 RPLVVNAAHRKGAGPAPAGDSAWGDSVSELDALRTVLEDLPVAVFVRDDQHRLIYANKYY 220 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + + G + P+ ++ + + L D + + + Sbjct: 221 ETFSGRARSEYL---GMTEHEMFGPEGAEPIYQENL-LALRDGISVELESEM---PSKGG 273 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEAT 461 + + G + + ++ + Q + SIL + Sbjct: 274 HVYPVISRVNRVITADGR-TYVVGSFSDISPLKEREKALIASRKQEEVLHRDIESILRSL 332 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNT----------PSVMN 510 G+ I++ + IL N ++ P ED +PF + +N P + Sbjct: 333 PIGVLILDNDHRILYVNDEFYSIWELPREDGFDGRPFIDVIRRNHELGRYDGTRTPEELY 392 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + + + +E G K + I + + LT DIS ++ + + Sbjct: 393 AFRKHLFEAAEPEPIEVGWAG----GKSV---IFDSRRISNDRILLTYADISAVREREKE 445 Query: 571 LSHAKKIAEKESSHKSDFLARVS 593 + + E+ D +S Sbjct: 446 IHETRAALERVGEMMRDATHAMS 468 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 31/388 (7%), Positives = 82/388 (21%), Gaps = 29/388 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D L ++ G + +GM ++ +P L R + Sbjct: 208 DDQHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEGAEPIYQENLLALRDGISVELESE 267 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----KKFS 205 P +G ++Y P+ + + + F + + ++ + + Sbjct: 268 MPSKGGHVY-PVISRVNRVITADGRTYVVGSFSDISPLKEREKALIASRKQEEVLHRDIE 326 Query: 206 HLHEIKKGHSSVEKEKYDIFS-----------QQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + + I + R V D Sbjct: 327 SILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDGFDGRPFIDVIRRNHELGRYDGTR 386 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL--- 311 E+ E E + + N+ Sbjct: 387 TPEELYAFRKHLFEAAEPEPIEVGWAGGKSVIFDSRRISNDRILLTYADISAVREREKEI 446 Query: 312 ---SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 A + + + + G + +N + + + G L Sbjct: 447 HETRAALERVGEMMRDATHAMSQGLAIVQDGIIKMSNEAMADILQIPPHYIEAGQGWLGM 506 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 D + +L A E + M Sbjct: 507 FEFCAARGDFHDAAADILEGWRANIAARQPISTVFHVGGERWVNMDATVSTG-------Q 559 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + + + ++ + + + Sbjct: 560 HWVALFTDVTELKSREEELRELLSRAEA 587 >gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1283 Score = 367 bits (941), Expect = 6e-99, Method: Composition-based stats. Identities = 136/739 (18%), Positives = 261/739 (35%), Gaps = 43/739 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D L +E K + G H + I ++ N W + Sbjct: 551 TDLEQELIYANEAALKLCDKTVNDVCKGKIAEFFEFENHEEKLEEIIPKIEEGNIWQDE- 609 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 I+G P +++ I+S + G+ ++ + + L R + Sbjct: 610 VNLKIKGNKAE-PFEVSIKAIHSDQNQKIGYS--LVLQNLSEKYEAKKLANRAKMIVENS 666 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYAHKDDVLKTEKYPLLT 263 + + + S + V S L YA ++ + + Sbjct: 667 PVVLFRIDPNDDFRIVYISDNVARFGYNAQQLVESKKSILDLLYAEDARHIREKSKEIKN 726 Query: 264 S-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEG 318 S F + + + +++ S + L + L +E Sbjct: 727 EFGVPSFSGSYRFKKGDGSYIWVEDQTQEVRDESGKIQLHEGLILDIDDRKKLEDINEER 786 Query: 319 ENLTPETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + P F+ A + +D E + + Sbjct: 787 DRQYRILASNIPGTNVFLLDKERKYIVAEGTNFENWGMTR-EDFEGKFLWEVHVTPYEEV 845 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + + A + A +F P +Q I + Sbjct: 846 NALLDQVYYDRQFLESEFAF----------GDRYYARSFRPIVINDQVE---FVLSIIRD 892 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 D K + + +++E +++ I + + + + V + GY D++ K Sbjct: 893 ITDEHQAKINLLQSEEKYRTLVEESTEIIFSLTEKFELQYVSPNVQQFLGYKASDVIGKS 952 Query: 497 FTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 FL + L + L Q LE + ++ + + + + Sbjct: 953 IFEFLNPDDMGEFEKILGDNQDFLAQNQFLEFRLRHLNGDYRVFNSHGKLIEDKEGNPSF 1012 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y+ D+S+ K+ + +L AK+ AE+ S KS FL+ +SHEIRTP+ A+IG S ++ + Sbjct: 1013 YTGIARDVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLMQE 1072 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +E + S ++ ++ND+LD +KI+SGK+ L P+ L V+ + Sbjct: 1073 D----PRADQLENLKTLQFSAENLMALINDILDYNKIDSGKVELEELPLDLKNLVTRIVH 1128 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ANEK + + ++P+ +L D + QI N+LSNAI FT G ++ I +H Sbjct: 1129 SHSFQANEKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDKG-EVTIKLSHE 1187 Query: 733 --SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 V DTG+G+ + E + F Q +S + GTGLGL + K +V+ Sbjct: 1188 ILEKGICRVNFECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRLVNLY 1247 Query: 789 MGKFYIFSTPAKGTLIEII 807 G + S + G+ + Sbjct: 1248 GGDIEVNSNISGGSTFKFY 1266 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 59/540 (10%), Positives = 143/540 (26%), Gaps = 70/540 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147 +D+ G K I + + +G ++G D D I+ L+ + Sbjct: 150 LDSEGNYKFIGPSVGQKLGFKVEDIVGKNFQDFIDAGIIELVKGDFESALQSEEEV-NID 208 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206 EG A +++ + G++ R D L K+F Sbjct: 209 FWVHREGEKSKYIESFAKNLLHNPQIQ-------GVIFSARDITDYVQTDFSLQKRFDLE 261 Query: 207 -LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + E + S + + + + + L + + Sbjct: 262 NMINKVSALLINESPIDLLKSLKDSFSIVGEFLNAKGVEIHLREGESTLFSSLCLWGKLK 321 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + S+ ++ + N K ++ + N E+ Sbjct: 322 KRSVQKELELILQNAAFQ--KVQLKSIDEECCFILIPMVSNNRLKGLLLIQVNESNLQ-- 377 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD------DIEIAGGLSTLLDAPKL---- 375 D+ + A + + ++ + + ++ G K+ Sbjct: 378 FDESELQILRQMGDMFLGAYEASKMKSRIERNENLLATTELIAKSGSWRYNVHRKMFHFS 437 Query: 376 -------------------------SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + R T + ++ T++ + + Sbjct: 438 GGLAYMFGLGNKPTYAKFSTMIYKIDKPFRKEFITNLRETITSLQTTSGEFTMKSPEDKN 497 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + + + GI + + + ++ ++ IL D I + + Sbjct: 498 VIINYEIDVPSGGMGHQIEVVGICTDVTHKKATEEQLVLQSQ----ILAQVKDPIVVTDL 553 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 E ++ N A KL V D+ + F E + + + Sbjct: 554 EQELIYANEAALKLCDKTVNDVCKGKIAEFFEFENHEEKLEEIIPKIEEGN--IWQDEVN 611 Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K K + IK + YSL + ++SE + + + K Sbjct: 612 LKIKGNKAEPFEVSIKAIHSDQNQKIGYSLVLQNLSEK----------YEAKKLANRAKM 661 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 81/265 (30%), Gaps = 18/265 (6%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD------IEIAGGLSTLLDAPKLSDNN 379 D+ P F+ + + N F + S E+ L T ++ +L+ Sbjct: 13 FDQMSEPLFMIDSEEIIFFNKYFHSNYELISDQWQSFIDYPEVRKSLKTYFESGELTQ-- 70 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 L + L + + +N + Sbjct: 71 INFFKSLKSLSGDFLLFEWSLIALPSSYQNRFVIV---------KGARSKFYSESMLVQT 121 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++ + + L SIL T D I I++ EG +V + G+ VEDI+ K F Sbjct: 122 PENAEKNAKYNLHFLESILNNTHDLITILDSEGNYKFIGPSVGQKLGFKVEDIVGKNFQD 181 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTM 558 F++ ++ L + ++ ++ K + + P + Sbjct: 182 FIDAGIIELVKGDFESALQSEEEVNIDFWVHREGEKSKYIESFAKNLLHNPQIQGVIFSA 241 Query: 559 HDISEWKQEKNKLSHAKKIAEKESS 583 DI+++ Q L + + Sbjct: 242 RDITDYVQTDFSLQKRFDLENMINK 266 >gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3] Length = 545 Score = 367 bits (941), Expect = 7e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKGLLEDIRMVLDNKAGEKEISLQVNALKGV-SVIGDPSRLKQIFINLMNNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHHGTITVDSEVGEGTTFTVVLP 539 >gi|126662135|ref|ZP_01733134.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38] gi|126625514|gb|EAZ96203.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38] Length = 1562 Score = 367 bits (941), Expect = 7e-99, Method: Composition-based stats. Identities = 100/517 (19%), Positives = 206/517 (39%), Gaps = 17/517 (3%) Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 ++Y N ++ E + + S GN+ + N + +KS + Sbjct: 790 WKYTDITNRVKSQLLLEQSEERNRLITESALNAIINIDSSGNIIFWNKQAEEIFGWKSEE 849 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 I ++ + + + + + L ++ + + Sbjct: 850 VIGKKL-QDNIIPIQHRAGHADGLKRYIECGEGPALNKLLELPAVKKDGTE---VLLEMA 905 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + + + + + + +++ + + +I+ + G+ ++ +I N Sbjct: 906 IIPIKQGDELFFCSFIQDISERKKAENQLKFQEKKYRNIIANMNLGMIEVDNNDLIQFAN 965 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++ + G+ ++++ K T + + E+ S + + E + Sbjct: 966 QSFCNISGFDRDELIGKNPTSIFVDDENKKIIDSKKELRSQGNSDLYQIPVINKKGESRW 1025 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ DI++ K + +L K+ A S K FL+ +SHEI Sbjct: 1026 WAISGAPNYDENGQLIGTIGIHLDITDQKLLEIELEKEKQRAINASKAKEVFLSTMSHEI 1085 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL AIIGF + + Y + + +L I+ND+LDISKIESG+M Sbjct: 1086 RTPLNAIIGF----LRELSKHTTSQEQKIYLENSTIASSHLLSIINDVLDISKIESGEME 1141 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 L L +V + ++++++ A EK + ++++F + I +L D ++QI N++ N+ Sbjct: 1142 LESNNFDLKHSVEKVVTILEVKAKEKGLELKSNFNSGISNLLLGDSFRIEQILYNLIGNS 1201 Query: 716 IHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + FT G I + +E+++ + DTG+G+ LE F Q + Sbjct: 1202 LKFTIEGS-IYVQCDLIQDFEEEQELLISISDTGIGIEESYLETIFTKFSQEEKDTSRKF 1260 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLG+ + K +VD G I S GT I + Sbjct: 1261 GGTGLGMAITKELVDLMRGNITIESKKNTGTKITVFL 1297 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 85/256 (33%), Gaps = 17/256 (6%) Query: 333 FFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKL---SDNNAIKPVMLYR 388 F + + +AN F L S + + +++A KL S+ + + Sbjct: 695 VFEDENNIILFANQLFCDLFTISASPESLIGLDCEDCMMNAKKLFVESEEFTERIFDILN 754 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + ++ + + + + + + + ++ +E Sbjct: 755 KKEIVVNEIIEMNNGIFLERDYVPLFIN--------NKYKGHLWKYTDITNRVKSQLLLE 806 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPS 507 + I E+ + I I+ G I+ N+ ++FG+ E+++ K + + Sbjct: 807 QSEERNRLITESALNAIINIDSSGNIIFWNKQAEEIFGWKSEEVIGKKLQDNIIPIQHRA 866 Query: 508 VMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563 L + L K K+ + L + I + + + DISE Sbjct: 867 GHADGLKRYIECGEGPALNKLLELPAVKKDGTEVLLEMAIIPIKQGDELFFCSFIQDISE 926 Query: 564 WKQEKNKLSHAKKIAE 579 K+ +N+L +K Sbjct: 927 RKKAENQLKFQEKKYR 942 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 11/174 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTW 143 +D + ++ ++ G ++IG + D N I +L + N+ Sbjct: 954 EVDNNDLIQFANQSFCNISGFDRDELIGKNPTSI---FVDDENKKIIDSKKELRSQGNSD 1010 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G + + I + P Y N + G G + ++ ++ Sbjct: 1011 LYQIPVINKKGESRWWAI--SGAPNYDENGQLIGTIGIHL--DITDQKLLEIELEKEKQR 1066 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + + K+ S + + +S + ++ + + Sbjct: 1067 AINASKAKEVFLSTMSHEIRTPLNAIIGFLRELSKHTTSQEQKIYLENSTIASS 1120 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 53/185 (28%), Gaps = 27/185 (14%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-- 487 + + ++ + ++L GI + IIL N+ LF Sbjct: 659 FAQMISNVDQRHKVESDLKYKNELQKTLLSNIQSGIVFEDENNIILFANQLFCDLFTISA 718 Query: 488 PVEDILRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLS 540 E ++ + + +IL+ E I + G E + Sbjct: 719 SPESLIGLDCEDCMMNAKKLFVESEEFTERIFDILNKKEIVVNEIIEMNNGIFLERDYVP 778 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L I + DI+ + + L + +E+ + ++ L Sbjct: 779 LFIN----NKYKGHLWKYTDITNRVKSQLLL----EQSEERNRLITESA----------L 820 Query: 601 TAIIG 605 AII Sbjct: 821 NAIIN 825 >gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 367 bits (941), Expect = 7e-99, Method: Composition-based stats. Identities = 123/582 (21%), Positives = 228/582 (39%), Gaps = 40/582 (6%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----------PS 310 L + + + + + + + +++ L N Sbjct: 86 LANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRMLGAHNDITEYKQQQLALEE 145 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLS 367 A + E+ V+ P+ + + +A+ + L Y S + + Sbjct: 146 AQATLRQSEDKYRTLVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWV 205 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 ++ A L A + ++ + R + +Q Sbjct: 206 DVIVAEDLPLVEAAVQHAIKAREKYTVEYRIR----HQKGHVIWVSETGSAQDYDQNGHP 261 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486 +G+ + D ++++ + + + E + GIA+ + G L N AV++ G Sbjct: 262 AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAG 321 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y E+ + + L + + EK + K+ + + Sbjct: 322 YTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI--RKDGSRYPVLLNGF 379 Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 K + DISE + A++ AE + KS+FLA +SHEIRTP+ AI Sbjct: 380 KTTTPEGKTVIWSIIQDISE-------IKKAQEAAEAANRSKSEFLANMSHEIRTPMNAI 432 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG ++ + P PR +Y I S +L ++ND+LD SKIE+GK+ + P Sbjct: 433 IGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFD 490 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722 L E +++ L+ A EK + + + +PR+L D + Q+ +N+ +NAI FT +G Sbjct: 491 LSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPHRLGQVLINLTANAIKFTETG 550 Query: 723 GQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++ IS + + VRDTG+GM+ ++E+ +PF Q + + GTGLGL Sbjct: 551 -EVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGL 609 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 +A +V G+ + STP G+ L PH + Sbjct: 610 SIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHKAL 650 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 27/386 (6%), Positives = 70/386 (18%), Gaps = 37/386 (9%) Query: 98 ISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTLWPIE 153 +S + + +G + D+ + + + L + + ++ Sbjct: 44 MSPKFWQILGYDPSTKQHLSSEWQDIINQDDLKATTENLEKHLANPDHPFDQVVRYRHLK 103 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G V + L I + R G + + + + + Sbjct: 104 GHT--VWVRCRGLAIRDKQGRPI--RMLGAHNDITEYKQQQLALEEAQATLRQSEDKYRT 159 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---------------TEYYAHKDDVLKTEK 258 +P L L + +D L Sbjct: 160 LVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAA 219 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSA 313 + + + + YL + Sbjct: 220 VQHAIKAREKYTVEYRIRHQKGHVIWVSETGSAQDYDQNGHPAYLDGVIADITDRVQAQK 279 Query: 314 YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E + P+ + G N + Y + LS Sbjct: 280 EISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEE----FKQLSYFDV 335 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQ 430 P + + + I+ + + + Sbjct: 336 TPMEYMEDEKRQLESMEKIGRYGPFEKEY--IRKDGSRYPVLLNGFKTTTPEGKTVIWSI 393 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456 E + + + Sbjct: 394 IQDISEIKKAQEAAEAANRSKSEFLA 419 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI-DPNNHIGDLLKRQNTWY 144 +DA + S+ + G + + + G DV + + +K + + Sbjct: 172 EVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAAVQHAIKAREKYT 231 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +G ++V +A Y +N + G ++ + + KF Sbjct: 232 VEYRIRHQKGHVIWVSETGSAQ-DYDQNGHPAYLDG--VIADITDRVQAQKEISAQEAKF 288 Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E+ ++ + + P + L+ + + ++ EK L Sbjct: 289 RGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQL 348 Query: 262 LTSE--ESSLPEQEDFHTINLNQYTK 285 + E P ++++ + ++Y Sbjct: 349 ESMEKIGRYGPFEKEYIRKDGSRYPV 374 >gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 558 Score = 366 bits (940), Expect = 7e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLKQIFINLMNNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937] Length = 1364 Score = 366 bits (940), Expect = 7e-99, Method: Composition-based stats. Identities = 136/723 (18%), Positives = 260/723 (35%), Gaps = 51/723 (7%) Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-----GFGIV----HVNRV 189 N G + + PI + SG+R GF ++ Sbjct: 160 SGNRPIGLDIASEPRRRAAALQAARSGEPIMTSPVSLSGYRVPSESGFLVLLPVYREGMP 219 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYA 248 P+ + +++ S E+ D+ + T A Sbjct: 220 LQTPQQRMAATNGWVYAPFAVEQMVQSALGERSDVALDLSDRNEPTHNFYRSGIPTGASA 279 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 V++ T ++ P ++N + + L N Sbjct: 280 RWRPVVQLLPIYGRTWIITAHPTASFVASLNQTSPWLVGGLVMAASVLLAALLALYFSNG 339 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-------- 360 + L G + + NP+ ++ Y + D I Sbjct: 340 LRREEVLRKQMELAALVSHSSEAIVAETPDGRITHWNPAAEVMFGYTAEDAIDQDLTLLL 399 Query: 361 -EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + NA + D + A I L+ F Sbjct: 400 SPQPYAMPQIDHTDDALPPNASAAQSMRHRDGHHVHVLASKAPIIEPDGT-LSGHSHFFR 458 Query: 420 KANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILST 477 ++ + + ++ ++ +R ++ + +IL I + G + Sbjct: 459 DISERVRSHQRIVDLNASLEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLF 518 Query: 478 NRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--------- 527 NRA KL GY ED++ + + F+E H L+E + + QTLE Sbjct: 519 NRAAEKLLGYNAEDVIGRRKASQFVEPEELQDRAHLLSEQTGVPVAQTLEAVAALTSLGR 578 Query: 528 ----ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + L + + + L + Y D++E K + +L A A+ Sbjct: 579 SDTSEWTYVSHDGRRLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKMHEKQLRLAMDAAK 638 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KSDFLA +SHEIRTP+ AI+G +++ + IDRS +L+ Sbjct: 639 SANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAA----QDMVTKIDRSARTLLE 694 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698 I+ND+LD SKIE+G+++L P L++ L++ + K + + + +L Sbjct: 695 IINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLL 754 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753 D + Q+ +N++ NAI FT G ++++S + + ++ VRDTG+G++ + Sbjct: 755 GDALRINQVLVNLVGNAIKFTEQG-EVVLSVRRFPSGDPNKVKLLFSVRDTGIGISKEKQ 813 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 PF Q S R G+GLGL +++ +++ G+ + S P +G+ + L Sbjct: 814 SLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVVTLEKA 873 Query: 814 SHP 816 + P Sbjct: 874 ASP 876 Score = 83.9 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 50/442 (11%), Positives = 115/442 (26%), Gaps = 55/442 (12%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G G+G +H RV A + + ++ + + E+Y + + Sbjct: 99 RDYAREFPGVLGYGYIH--RVAPADEAAFLQTARADGAPDIHRRLLAPWDGERYIVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S + + L + Sbjct: 157 PESSGNRPIGLDIASEPRRRAAALQAARSGEPIMTSPVSLSGYRVPSESGFLVLLPVYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + P V++ Sbjct: 217 GMPLQTPQQRMAATNGWVYAPFA--------------VEQMVQSALGERSDVAL------ 256 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 D+ + + + + + + R I + Sbjct: 257 ----------DLSDRNEPTHNFYRSGIPTGASARWRPVV----QLLPIYGRTWIITAHPT 302 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKMEIEVMQLCSILEATSDG 464 S + M + + + + + ++ + M+L +++ +S+ Sbjct: 303 ASFVASLNQTSPWLVGGLVMAASVLLAALLALYFSNGLRREEVLRKQMELAALVSHSSEA 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I N A +FGY ED + + T+ L + Sbjct: 363 IVAETPDGRITHWNPAAEVMFGYTAEDAIDQDLTLLLSP--QPYAMPQIDHTDDALPPNA 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 ++ ++ + + + DISE + ++ E Sbjct: 421 SAAQSM-RHRDGHHVHVLASKAPIIEPDGTLSGHSHFFRDISERVRSHQRIVDLNASLEH 479 Query: 581 ESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 34/386 (8%), Positives = 85/386 (22%), Gaps = 34/386 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLC-----------DVSDILHIDPNNHIGDLLKR 139 G + + G A I L + P N Sbjct: 368 PDGRITHWNPAAEVMFGYTAEDAIDQDLTLLLSPQPYAMPQIDHTDDALPPNASAAQ--- 424 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 ++ +G +++ + + PI + SG F Sbjct: 425 --------SMRHRDGHHVH--VLASKAPIIEPDGTLSGHSHF--FRDISERVRSHQRIVD 472 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L+ H ++ + S + K + + + + S + + L Sbjct: 473 LNASLEH--QVAERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNRAAEKLLGYNA 530 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + E + +Q + + S + + + Sbjct: 531 EDVIGRRKASQFVEPEELQDRAHLLSEQTGVPVAQTLEAVAALTSLGRSDTSEWTYVSHD 590 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + + + LT+ K + + SD Sbjct: 591 GRRLPVLLTLST--LRDDNDQVIGYLGVAVDLTEQKMHEKQLRLAMDAAKSANQSKSDFL 648 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + + L + +T I + + Sbjct: 649 ANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID----RSARTLLEIINDILDFSK 704 Query: 440 TRINKRKMEIEVMQLCSILEATSDGI 465 + +E L + + +D + Sbjct: 705 IEAGRIDLERAPFDLNQLFDNIADLM 730 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/284 (9%), Positives = 67/284 (23%), Gaps = 25/284 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138 D+ G++ + K +G A +IG R L D + +L + L+ Sbjct: 509 TDSSGFVTLFNRAAEKLLGYNAEDVIGRRKASQFVEPEELQDRAHLLSEQTGVPVAQTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + N + G+ G + Sbjct: 569 AVAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKMH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306 + ++ + E I+L + + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 746 LPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 856 Score = 366 bits (940), Expect = 8e-99, Method: Composition-based stats. Identities = 111/587 (18%), Positives = 203/587 (34%), Gaps = 41/587 (6%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + + +N N L F + Sbjct: 275 QRGTAIAHLLTATFAVWGVLRGSGPFMNNLNENPQVFSLQAFILVMTVTGLFLAGAVEER 334 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLS 367 ++ A GE + + L + + L Sbjct: 335 QTVEASLRSGEASLATAQRIAKLGHWELDIPQLTCTWSDQLYRIFGVNPQQVTPSIDSLM 394 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + ++ I S + + + + Sbjct: 395 QYIHHQDRPRVENA----ISQAISEQIPYSIDYRIARPDGQERFVV-------EQAIVTP 443 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486 + + + + + + + +A+ GI+I EG + N + + G Sbjct: 444 THITSTVQDITERKRAEIALRASEERFSRVFKASPIGISITTVEEGRFVDVNDSFLQQLG 503 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + E ++ + F E +N L I + D L + + + I Sbjct: 504 WSREQVIDRTFEDL-EMWDAEQINPILQRITNGDRLSNLTVQVRHKSGAIRDWLIAIEPI 562 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 +L + C + DI+E KQ + +L AK+ AE+ + KS FLA +SHE+RTPL AI+G+ Sbjct: 563 QLENTPCLLILASDITEHKQAE-ELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGY 621 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE + + LG ++ I +G +L +++D+LD SKIE+G+MN H E ++ Sbjct: 622 SE-LLQEDAEDLGQDDWVADLKNIHVAGQHLLTLISDILDFSKIEAGRMNFHLEKCQINT 680 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + E + + A++ A + + DL V+Q LN+LSNA FT G Q+ Sbjct: 681 LLWEVETTIAPLADKNHNQFTLEVAPGLDLMYTDLTKVRQSLLNLLSNACKFTEQG-QVT 739 Query: 727 ISTTHT------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + + +V+D G+GM ++ PF Q Sbjct: 740 LRVWKQLIPATDLPDLPVYHSLESPEEELSEIPFIFFQVQDHGIGMNERQIATVFSPFTQ 799 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S + GTGLGL + + G ++ S KG+ + P Sbjct: 800 ADESTTRKYGGTGLGLSITHKLCQMMGGDLWVESELNKGSTFTMRLP 846 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 72/306 (23%), Gaps = 26/306 (8%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-------EIKKGHSSVEKEKYDIFS 226 +G G V + G+ + +I + + + Y IF Sbjct: 321 TVTGLFLAGAVEERQTVEASLRSGEASLATAQRIAKLGHWELDIPQLTCTWSDQLYRIFG 380 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + SL +Y H+D SE+ + + Sbjct: 381 VNP----QQVTPSIDSLMQYIHHQDRPRVENAISQAISEQIPYSIDYRIARPDGQERFVV 436 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYA 344 + + + + E PI + G Sbjct: 437 EQ--AIVTPTHITSTVQDITERKRAEIALRASEERFSRVFKASPIGISITTVEEGRFVDV 494 Query: 345 NPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 N SFL + I+ A ++ +L D + V + Sbjct: 495 NDSFLQQLGWSREQVIDRTFEDLEMWDAEQINPILQRITNGDRLSNLTVQVRHKSGAIRD 554 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + IQ L + + Q E + + + +L Sbjct: 555 WLIAIEPIQLENTPCLLILASDITEHKQAEELRRAKEAAEQANQAKS--LFLANMSHELR 612 Query: 456 SILEAT 461 + L A Sbjct: 613 TPLNAI 618 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 8/116 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G ++++ + +G ++I D+ + N I + + T Sbjct: 488 EGRFVDVNDSFLQQLGWSREQVIDRTFEDLEM-WDAEQINPILQRITNGDRLSNLTVQVR 546 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSH 206 + + + +A PI + I+ L + + Sbjct: 547 HKSGAIRDWL-IAIEPI-----QLENTPCLLILASDITEHKQAEELRRAKEAAEQA 596 >gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118] gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118] Length = 1364 Score = 366 bits (940), Expect = 8e-99, Method: Composition-based stats. Identities = 129/706 (18%), Positives = 254/706 (35%), Gaps = 65/706 (9%) Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + P+ + SG+R GF ++ P+ +++ Sbjct: 185 SGEPVMTSPISLSGYRVPSESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ D+ + + A + V++ T ++ P Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N + + L N + L Sbjct: 305 FVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + + NP+ + Y + + I+ L+ LL + +D Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTMLLSPQPYAMPEVD------HADAAL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 ++ T++ + + + + + D + ++ Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I I+ G + N A KL GY +++ + Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGR 536 Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + F+E H L E + TLE + + + L + Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+GLGL +++ +V+ G+ + S P +G+ + L ++ P Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSAPPQ 877 Score = 86.6 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G G+G +H RV A + + ++ + + E+Y + + Sbjct: 99 RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S + + L + Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRVPSESGFLVLLAVYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + +VY+ ++ S Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++D + + + ++A++P ++ + R I + Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKMEIEVMQLCSILEATSDG 464 + M + + + + ++ + M+L +++ +S+ Sbjct: 303 AGFVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I N A +FGY ++ + + T+ L + + Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSP--QPYAMPEVDHADAALAGNA 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T+ ++ + + + S DIS+ + ++ E Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479 Query: 581 ESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 36/376 (9%), Positives = 85/376 (22%), Gaps = 14/376 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149 G + + G A + I L + + P D N +T Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSPQPYAMPEVDHADAALAGNASAAQTMR 427 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G ++ + + PI SG F L+ H + Sbjct: 428 -HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--Q 480 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + S + K + + + + S + + L + + Sbjct: 481 VAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKAS 540 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E +Q + + + S + + + + Sbjct: 541 QFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 H + + LT+ K + + SD A + Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + L + + I + + + +E Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714 Query: 450 EVMQLCSILEATSDGI 465 L + + +D + Sbjct: 715 APFDLNQLFDNIADLM 730 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 69/283 (24%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138 ID+ G++ + K +G A ++IG R L + + +L + L+ Sbjct: 509 IDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1162 Score = 366 bits (940), Expect = 8e-99, Method: Composition-based stats. Identities = 100/549 (18%), Positives = 205/549 (37%), Gaps = 29/549 (5%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + + ++ L + L T+D Sbjct: 105 FGILVLSRSRSFEPFLINELLPLTAMLARACRSCLEVEKRRQAEEELSNSKALLEATLDS 164 Query: 329 CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P + + + N + + G + ++ Sbjct: 165 IPDIIGIQKPDHTMIRYNQAGYDFLGLTPEE----VKGRKCYELIGRSVPCSSCTSARAV 220 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 R+ R ++ + I + + + +++K+ Sbjct: 221 RTGRQGFKEKYLPEYDRY-------LECISQPVFDSQGSVHLVVEQLRDITQRKRSEKKL 273 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + Q S+ TSD + + + I + N +++FG+ +E++ + ++ Sbjct: 274 LTQKAQFESLFTNTSDAMVYFDADLKIFNVNTRFTEMFGHDLEEVRGRNIIDVVDPEGKE 333 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564 + +E +++ + + + + DIS+ Sbjct: 334 THYGAYRILAGEK----VEMECTRYSRDGEPREVLLKGGPVLVDGNITGGFAVYSDISQR 389 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + ++ A+ AE+ S KSDFLA +SHEIRTPL ++ +++ GP Sbjct: 390 KNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSLGP----EQR 445 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + S +L+I+ND+LD S+IE+G++ L + L+ +S + L+ A K + Sbjct: 446 EYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRARSKEV 505 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739 + + PR + D ++QI N++ NA+ FT G I++ + E + + Sbjct: 506 ELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEKG-YILVQVSLAEAGEEKARLKI 564 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTGVG+ + EK + F Q+ S R GTGLGL +++++V G + S Sbjct: 565 SVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGDLQVMSREG 624 Query: 800 KGTLIEIIF 808 +G+ Sbjct: 625 EGSTFFFEL 633 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 62/211 (29%), Gaps = 10/211 (4%) Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 A + + ++L D A + I + F+ E Sbjct: 75 LAREADTDGFQDWLLLQEQDSFHYAFRLQDFGILVLSRSRSFEPFLINELLPLTAMLARA 134 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 E R + ++ L + L++ D I I + ++ N+A G E Sbjct: 135 CRSCLEVEKRRQAEEELSNSKALLEATLDSIPDIIGIQKPDHTMIRYNQAGYDFLGLTPE 194 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ + + + + + + EK + L I + + Sbjct: 195 EVKGRKCYELI-GRSVPCSSCTSARAVRTGRQGFKEKYLPEYDR-----YLECISQPVFD 248 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKI 577 S + DI++ K+ + KL K Sbjct: 249 SQGSVHLVVEQLRDITQRKRSEKKLLTQKAQ 279 Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 41/341 (12%), Positives = 92/341 (26%), Gaps = 23/341 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA + ++ + G+ ++ G + DV D + + +L + T Sbjct: 295 DADLKIFNVNTRFTEMFGHDLEEVRGRNIIDVVDPEGKETHYGAYRILA-GEKVEMECTR 353 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + +G + L P+ + +G GF + + R Sbjct: 354 YSRDGEPRE--VLLKGGPVL-VDGNITG--GFAVYSDISQRKNYEKEIIRARDAAEEASR 408 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESS 268 K + + P + + +S L E + + + + S + Sbjct: 409 AKSDFLANMSHEIR-------TPLNGVVSMMSLLEETSLGPEQREYVDMATISSESLLNI 461 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326 + + DF I + + L+ L+ R + + P V Sbjct: 462 INDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRARSKEVELLVDYDLQAPRRVRG 521 Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D + +Y+ GN +L + + E L + D PV Sbjct: 522 DNLRLRQILYNLVGNAVKFTEKGYILVQVSLAEAGEEKARL-----KISVQDTGVGIPVH 576 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + + L + + Sbjct: 577 MQEKIFEHFT-QVDYSSTRRHGGTGLGLAISRSLVRLMGGD 616 >gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium thermophilum IAM 14863] Length = 755 Score = 366 bits (940), Expect = 8e-99, Method: Composition-based stats. Identities = 95/505 (18%), Positives = 192/505 (38%), Gaps = 43/505 (8%) Query: 331 IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 V + NP++ +T Y + I + L+ + + Sbjct: 16 DGIVVADKDTVILDVNPAYEAVTGYSRDELIGRKTNI----VRSGLTPPEVFRDMWTQLG 71 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME- 448 + + N ++ + GI + + ++++ Sbjct: 72 RQGKWVGEVIN---RHKNGNLWYSFLSITRIVDEGGSVVAYVGIARDITQRKAMEQQLRQ 128 Query: 449 -------------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +L ++L++ + I +++ GI + N + G P E I+ K Sbjct: 129 NLAEIQSARELAQAQATRLTALLDSVGEAIIMVDTLGICVVANHQAGGMLGLPAEQIVGK 188 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFSS 552 S+ + + +E + ++ Sbjct: 189 SVHELHALALRSLGVSAFQWQPAPNGGPPIEPETNVIETREQRPRVFHEFAAPVTDTEGH 248 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DI+ + K++F+A VSHE+RTP+T+I G ++ Sbjct: 249 VLGRIYVYRDIT--------------KETELDRMKTEFIATVSHELRTPMTSIKGALGLV 294 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 G L P E + + ++ ++ND+LDIS+IE+GKM + P+S + V Sbjct: 295 LGGAAGDLP-PEARELLTIARNNTDRLIRLINDILDISRIEAGKMEIRRAPLSPADVVRR 353 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A+ + +A ++ I + T + R++AD + Q+ N++SNAI F+P G +++I Sbjct: 354 AVEEMNAFARQRNITLTTDVPEGLARVMADADRLHQVLDNLISNAIKFSPQGSEVLIRAR 413 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T + V V D G G+ + + F ++ N+ + GTGLGL + KA+V+ + G Sbjct: 414 ETGDG-VRFDVIDRGPGIPADQTGLIFERFYRVDNAASRKTGGTGLGLTICKAIVEEHGG 472 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815 + ++ S +G+ P+ H Sbjct: 473 QIWVESALGEGSTFSFTIPVEPGGH 497 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 6/135 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L + + DGI + +++ +IL N A + GY ++++ + + TP + + Sbjct: 7 LREVYWHSLDGIVVADKDTVILDVNPAYEAVTGYSRDELIGRKTNIVRSGLTPPEVFRDM 66 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 L + + K L + I ++ Y DI++ K + Sbjct: 67 WTQL--GRQGKWVGEVINRHKNGNLWYSFLSITRIVDEGGSVVAYVGIARDITQRKAMEQ 124 Query: 570 KLSHAKKIAEKESSH 584 +L + Sbjct: 125 QLRQNLAEIQSAREL 139 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 41/401 (10%), Positives = 88/401 (21%), Gaps = 57/401 (14%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGK 146 D + +++ G ++IG + + P D L RQ W G+ Sbjct: 22 DKDTVILDVNPAYEAVTGYSRDELIGRKTN--IVRSGLTPPEVFRDMWTQLGRQGKWVGE 79 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G Y L+ I + GI ++ + Sbjct: 80 VINRHKNGNLWYSF--LSITRIVDEGGSVVAY--VGIARDITQRKAMEQQLRQNLAEIQS 135 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ---------------SPPPHLRMKNK------VSSLTE 245 E+ + ++ D + L + + V L Sbjct: 136 ARELAQAQATRLTALLDSVGEAIIMVDTLGICVVANHQAGGMLGLPAEQIVGKSVHELHA 195 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 V + P PE T ++ + + + Sbjct: 196 LALRSLGVSAFQWQPAPNGGPPIEPETNVIETREQRPRVFHEFAAPVTDTEGHVLGRIYV 255 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + D + TV L + + G Sbjct: 256 YRDITKETELDRMKTEFIATVSH-------------------ELRTPMTSIKGALGLVLG 296 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE--NSLAMTFIPFEKANQ 423 + + + + +DR + L + P + + Sbjct: 297 GAA---GDLPPEARELLTIARNNTDRLIRLINDILDISRIEAGKMEIRRAPLSPADVVRR 353 Query: 424 FPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEAT 461 E M + D ++ + +L +L+ Sbjct: 354 AVEEMNAFARQRNITLTTDVPEGLARVMADADRLHQVLDNL 394 >gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1211 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 122/582 (20%), Positives = 228/582 (39%), Gaps = 40/582 (6%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL---------- 311 L + + + + + + + +++ L N + Sbjct: 86 LANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRILGAHNDITEYKQQQLALEE 145 Query: 312 -SAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLS 367 A + E+ V+ P+ + + +A+ + L Y S + + Sbjct: 146 TQATLRQSEDKYRTLVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWV 205 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 ++ A L A + ++ + R + +Q Sbjct: 206 DVIVAEDLPLVEAAVQQAIKAREKYTVEYRIR----HQKGHVIWVSETGSAQDYDQNGHP 261 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486 +G+ + D ++++ + + + E + GIA+ + G L N AV++ G Sbjct: 262 AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAG 321 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y E+ + + L + + EK + K+ + + Sbjct: 322 YTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI--RKDGSRYPVLLNGF 379 Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 K + DISE + A++ AE + KS+FLA +SHEIRTP+ AI Sbjct: 380 KTTTPEGKAVIWSIIQDISE-------IKKAQEAAEAANRSKSEFLANMSHEIRTPMNAI 432 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG ++ + P PR +Y I S +L ++ND+LD SKIE+GK+ + P Sbjct: 433 IGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFD 490 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 L E +++ L+ A EK + + + + P +++ D + Q+ +N+ SNAI FT G Sbjct: 491 LSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRLGQVLINLTSNAIKFTQQG 550 Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++ IS + + VRDTG+GM+ ++E+ +PF Q + + GTGLGL Sbjct: 551 -EVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGL 609 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 +A +V G+ + STP G+ L PH + Sbjct: 610 SIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHKAL 650 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 27/386 (6%), Positives = 70/386 (18%), Gaps = 37/386 (9%) Query: 98 ISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTLWPIE 153 +S + + +G + D+ + + + L + + ++ Sbjct: 44 MSPKFWQILGYDPSTKQHLSSEWQDIINQDDLKATTENLEKHLANPDHPFDQVVRYRHLK 103 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G V + L I + R G + + + + + Sbjct: 104 GHT--VWVRCRGLAIRDKQGRPI--RILGAHNDITEYKQQQLALEETQATLRQSEDKYRT 159 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---------------TEYYAHKDDVLKTEK 258 +P L L + +D L Sbjct: 160 LVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAA 219 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSA 313 + + + + YL + Sbjct: 220 VQQAIKAREKYTVEYRIRHQKGHVIWVSETGSAQDYDQNGHPAYLDGVIADITDRVQAQK 279 Query: 314 YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E + P+ + G N + Y + LS Sbjct: 280 EISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEE----FKQLSYFDV 335 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQ 430 P + + + I+ + + + Sbjct: 336 TPMEYMEDEKRQLESMEKIGRYGPFEKEY--IRKDGSRYPVLLNGFKTTTPEGKAVIWSI 393 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456 E + + + Sbjct: 394 IQDISEIKKAQEAAEAANRSKSEFLA 419 Score = 42.7 bits (99), Expect = 0.27, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI-DPNNHIGDLLKRQNTWY 144 +DA + S+ + G + + + G DV + + +K + + Sbjct: 172 EVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAAVQQAIKAREKYT 231 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +G ++V +A Y +N + G ++ + + KF Sbjct: 232 VEYRIRHQKGHVIWVSETGSAQ-DYDQNGHPAYLDG--VIADITDRVQAQKEISAQEAKF 288 Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E+ ++ + + P + L+ + + ++ EK L Sbjct: 289 RGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQL 348 Query: 262 LTSE--ESSLPEQEDFHTINLNQYTK 285 + E P ++++ + ++Y Sbjct: 349 ESMEKIGRYGPFEKEYIRKDGSRYPV 374 >gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1544 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 119/750 (15%), Positives = 253/750 (33%), Gaps = 58/750 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKT 147 D L E ++ L G +++GM +S H+ I + +T + Sbjct: 682 TDHEYKLIEFNDALCHIFGYTRRELLGMHFFRLSSTEHVPYLKAIFESFLSGDTEMPSEL 741 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +G + + I L R + ++ ++ + + Sbjct: 742 YVRRKDGQKIIIKISSGVLEREDGQRFI-----VSSIEDITDQKLSEHALEKSEENYRRI 796 Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS- 264 E V E+ I R + D + + Sbjct: 797 VETASEGLWVIDEEGYITFANRRMSEMLGRSVEDIIGTPLQDLIHPDEKENLQIYFYRWK 856 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 P+ F +N + ++ + + L + + +E + + Sbjct: 857 LGIEEPQDLKFRKLNGSILWGIVNTASIFDEFGKFTGALGMLTDITERKFAEEQLKSSQQ 916 Query: 325 ----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 ++ P+ + + NP+ + +K + +L Sbjct: 917 KLKHHIESTPLAAIEFDMSFKIVSWNPAAEKIFGFKKEEAFGK---HVRVLIPNTEWQAV 973 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + L + + + + ++ + + + + + + Sbjct: 974 YNEWTDLLQKQSGSVH---TFANLTKSGKHIQCNWYS-TPLIDNTGNTIGIAALAEDITE 1029 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++ + + L +I E+ + I+ I+ N+A +FGY +I+ + F + Sbjct: 1030 KKLAEAALIESQKSLTAIFESIDAAVISIDYNMQIVMFNKAGETIFGYTSAEIIGQSFDI 1089 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554 L +++ V + E EK G K I KL Sbjct: 1090 LLPEDSQHVHISEIIEFSQSSQTILKISDEKGLFGLRKHASSFPAEASISKLMVGGKPLM 1149 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + ++DI+E K+ + ++ A+++ + ++H++ LT I+ E++K Sbjct: 1150 VILLNDITERKKMQEQILRAQRM-----ESIGLLASGIAHDMNNILTPIMMSMELLKE-- 1202 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + + E I++S +++ LL ++ GK PV+L + E + Sbjct: 1203 --IVDDEEGFERIQTINKSTRRAKNLIQQLLAFAR---GKSEQQI-PVNLRRLILELTNF 1256 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731 ++ I + + N+P IL D + Q+ +N+ NA P GGQ+ IS+ Sbjct: 1257 MKETFPR-SIQLSVNIPKNLPFILGDPTQIHQVLMNLCVNAHDAMPDGGQLSISSEKISL 1315 Query: 732 -----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + + + V+DTG G+ N L K +PF +G+G+GLGL + Sbjct: 1316 SEAETKLHIDAKAGNYIKVIVKDTGTGIPNEHLHKIFEPFFTTKQ----QGKGSGLGLAM 1371 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V + G + S KGT EI FPL Sbjct: 1372 TYTIVHNHGGFITVDSEERKGTAFEIYFPL 1401 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 65/518 (12%), Positives = 156/518 (30%), Gaps = 29/518 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 +A G ++ ++ + G A + IG + SD+ + + I + W G+ Sbjct: 556 TNAAGEIEYVNPCFERVTGYTAKEAIGQNPRILKSDLHNQEYYASIWSQILLGKNWTGEF 615 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + ++ PI + + F I + + + S + Sbjct: 616 QNKRKNGELYWESATIS--PIKDETGKITHF--IAIKEDITHRKEAELALRESENLLSQI 671 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT----EKYPLLT 263 ++ + +Y + H+ + L ++ + Sbjct: 672 YKTLHTGICLTDHEYKLIEFNDALCHIFGYTRRELLGMHFFRLSSTEHVPYLKAIFESFL 731 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHRNHPSLSAYFDEGEN 320 S ++ +P + + + K G L+ + F + ++ E Sbjct: 732 SGDTEMPSELYVRRKDGQKIIIKISSGVLEREDGQRFIVSSIEDITDQKLSEHALEKSEE 791 Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V+ + + G + +AN + +SV+DI + + Sbjct: 792 NYRRIVETASEGLWVIDEEGYITFANRRMSEMLG-RSVEDIIGTPLQDLIHPD----EKE 846 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 ++ + + + L ++F + G+ + + Sbjct: 847 NLQIYFYRWKLGIEEPQDLKF---RKLNGSILWGIVNTASIFDEFGKFTGALGMLTDITE 903 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + +++ +L +E+T + I+S N A K+FG+ E+ K V Sbjct: 904 RKFAEEQLKSSQQKLKHHIESTPLAAIEFDMSFKIVSWNPAAEKIFGFKKEEAFGKHVRV 963 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555 + + + T++L TK K + L ++ + Sbjct: 964 LIPNTEWQAVYNEWTDLLQKQSGSV--HTFANLTKSGKHIQCNWYSTPLIDNTGNTIGIA 1021 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 DI+E K + L ++K A +S Sbjct: 1022 ALAEDITEKKLAEAALIESQKSLTAIFESID--AAVIS 1057 Score = 147 bits (372), Expect = 6e-33, Method: Composition-based stats. Identities = 62/517 (11%), Positives = 148/517 (28%), Gaps = 27/517 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142 + G L I+ L K IG + K + + + + LK + Sbjct: 298 IFQSSFEGKLIHINPALAKMIGYDSVKEAMDHVTNFGAQFYDKLETRKKIVAITLKSDDF 357 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + E Y L + G ++ N ++ Sbjct: 358 QFFDLVFRKKENEKRYG--KLFIRAVRDDKGRPKYIEG--LIEDNTDRRIAEEELEKTIN 413 Query: 203 KFSHLHEIKKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DD 252 +F L + G H+ K ++ S S + ++ + +++ D Sbjct: 414 QFQRLADNVPGMIYQYLHTVDGKSEFTYISPHSKDIYELESYEIIADMDHFFQLHHPHDF 473 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L + + + T + Q + S + + Sbjct: 474 HLICDIAKVSDPNSKPWNWEGRIITPSGKTKWI-QGRAHPEILSNGDILWDGLVTDITER 532 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 ++E V++ + + G + Y NP F +T Y + + I + Sbjct: 533 KAYEEKIKQLSTAVEQSANAIMITNAAGEIEYVNPCFERVTGYTAKEAIGQNP----RIL 588 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L + + + N E + ++ + Sbjct: 589 KSDLHNQEYYASIWSQILLGKNWTGE--FQNKRKNGE-LYWESATISPIKDETGKITHFI 645 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I+ + + + + L I + GI + + E ++ N A+ +FGY + Sbjct: 646 AIKEDITHRKEAELALRESENLLSQIYKTLHTGICLTDHEYKLIEFNDALCHIFGYTRRE 705 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 +L F + LS D E ++ ++ + + + Sbjct: 706 LLGMHFFRLSSTEHVPYLKAIFESFLSGDTEMPSELYVRRKDGQKIIIKISSGVLEREDG 765 Query: 552 SCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + ++ DI++ K ++ L +++ + S+ Sbjct: 766 QRFIVSSIEDITDQKLSEHALEKSEENYRRIVETASE 802 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 68/571 (11%), Positives = 159/571 (27%), Gaps = 43/571 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147 D G + +I+ IG + G + H +L K T + Sbjct: 175 DLDGNIIQINPFAESLIGYPLENIKGQNWFKLFVPEHDRAEGKNIFHELTKENKTQSHIS 234 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 T+ G+ I+ + + G G GI K +++F Sbjct: 235 TVISANGSQYA--IEWYCKTLTDTRGKIIGVLGIGI--DISERLQAEFALKASEERFRGF 290 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH------KDDVLKTEKYPL 261 E + + + + V ++ + + + + Sbjct: 291 FENSPIGIFQSSFEGKLIHINPALAKMIGYDSVKEAMDHVTNFGAQFYDKLETRKKIVAI 350 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDE 317 + F + K + ++++ + ++ Sbjct: 351 TLKSDDFQFFDLVFRKKENEKRYGKLFIRAVRDDKGRPKYIEGLIEDNTDRRIAEEELEK 410 Query: 318 GENLTPETVDKCPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 N D P + V Y +P + + +S + I + Sbjct: 411 TINQFQRLADNVPGMIYQYLHTVDGKSEFTYISPHSKDIYELESYEIIA---DMDHFFQL 467 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 D + I + SD + I + + + + + + +G Sbjct: 468 HHPHDFHLICDIAKV-SDPNSKPWNWEGRIITPSGKTK-WIQGRAHPEILSNGD-ILWDG 524 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + + K++ QL + +E +++ I I N G I N ++ GY ++ Sbjct: 525 LVTDITERKAYEEKIK----QLSTAVEQSANAIMITNAAGEIEYVNPCFERVTGYTAKEA 580 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + + + + L T K +L I + + Sbjct: 581 IGQNPRILKSDLHNQEYYASIWSQILLGKNWTG--EFQNKRKNGELYWESATISPIKDET 638 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH-----EIRTPLTAI 603 + DI+ K+ + L ++ + + + H E L I Sbjct: 639 GKITHFIAIKEDITHRKEAELALRESENLLSQIYKTLHTGICLTDHEYKLIEFNDALCHI 698 Query: 604 IGFSEV-IKNQRFGPLGNPRYIEYANYIDRS 633 G++ + F L + ++ Y I S Sbjct: 699 FGYTRRELLGMHFFRLSSTEHVPYLKAIFES 729 Score = 138 bits (348), Expect = 4e-30, Method: Composition-based stats. Identities = 67/541 (12%), Positives = 144/541 (26%), Gaps = 69/541 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLK-RQNTWYG 145 +D IS ++++I + I + W Sbjct: 433 VDGKSEFTYISPHSKDIYELESYEIIADMDHFFQLHHPHDFHLICDIAKVSDPNSKPWNW 492 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + G I A P N + G+V K+L S Sbjct: 493 EGRIITPSGKTK--WIQGRAHPEILSNGDIL---WDGLVTDITERKAYEEKIKQL----S 543 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E + +I + + D + + + Sbjct: 544 TAVEQSANAIMITNAAGEIEYVNPCFERVTGYTAKEAIGQNPRILKSDLHNQEYYASIWS 603 Query: 264 SEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDE 317 +F N Y + +++ + + +++ + + E Sbjct: 604 QILLGKNWTGEFQNKRKNGELYWESATISPIKDETGKITHFIAIKEDITHRKEAELALRE 663 Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI----------EIAGGL 366 ENL + + H L N + + Y + + E L Sbjct: 664 SENLLSQIYKTLHTGICLTDHEYKLIEFNDALCHIFGYTRRELLGMHFFRLSSTEHVPYL 723 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + ++ D + + R D I ++ ++ Sbjct: 724 KAIFESFLSGDTEMPSELYVRRKDGQKIIIKISSGVLEREDGQRFIVSS----------- 772 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + D ++++ +E I+E S+G+ +I+ EG I NR +S++ G Sbjct: 773 -------IEDITDQKLSEHALEKSEENYRRIVETASEGLWVIDEEGYITFANRRMSEMLG 825 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 VEDI+ P + + + Y + +L + Sbjct: 826 RSVEDIIGTPLQDLIHPDEKENLQIYFYRWKLGIEEP---QDLKFRKLNGSILWGIVNTA 882 Query: 547 KLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E K + +L +++ + TPL A Sbjct: 883 SIFDEFGKFTGALGMLTDITERKFAEEQLKSSQQKLKHHIES-------------TPLAA 929 Query: 603 I 603 I Sbjct: 930 I 930 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 35/274 (12%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 L+ ++ V V G++ YANP+ L + + G Sbjct: 42 RLNEELVLAKSRFESIVKNSADGILVLDDKGHIVYANPATHALFGVAPQSLLGLDFGYPA 101 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + L R R+ +W ++ ++ Sbjct: 102 V--------CGETTELDLPRHHGQPTVVEMRVADTEWEGRHASILSLH------------ 141 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + ++ E S++ IA+ + +G I+ N L GYP Sbjct: 142 -------DVTERKKVEDALQKERDFAESLVATAHAIIAVFDLDGNIIQINPFAESLIGYP 194 Query: 489 VEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 +E+I + + + + E+ + Q+ + + ++ K Sbjct: 195 LENIKGQNWFKLFVPEHDRAEGKNIFHELTKENKTQSHISTVI--SANGSQYAIEWYCKT 252 Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 L + DISE Q + L +++ Sbjct: 253 LTDTRGKIIGVLGIGIDISERLQAEFALKASEER 286 Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 59/525 (11%), Positives = 135/525 (25%), Gaps = 47/525 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G++ + G ++G D + + Sbjct: 68 LDDKGHIVYANPATHALFGVAPQSLLG---LDFGYPAVCGETTELDLPRHHGQPTVVEMR 124 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + E + + L ++ V + D + + Sbjct: 125 VADTEWEGRH----ASILSLHD-------------VTERKKVEDALQKERDFAESLVATA 167 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSEE 266 ++ I ++N + D + LT E Sbjct: 168 HAIIAVFDLDGNIIQINPFAESLIGYPLENIKGQNWFKLFVPEHDRAEGKNIFHELTKEN 227 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLT 322 + + N +QY + Y TL + + L S + E Sbjct: 228 KTQSHISTVISANGSQYAIEWYCKTLTDTRGKIIGVLGIGIDISERLQAEFALKASEERF 287 Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNNA 380 + PI F S G L + NP+ + Y SV + ++ + Sbjct: 288 RGFFENSPIGIFQSSFEGKLIHINPALAKMIGYDSVKEAMDHVTNFGAQFYDKLETRKKI 347 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + L D R + + G+ ++ D Sbjct: 348 V-AITLKSDDFQFFDLVFRKKENEKRYGKLFI-----RAVRDDKGRPKYIEGLIEDNTDR 401 Query: 441 RINKRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDIL--R 494 RI + ++E + Q + + I ++ + + ++ +I+ Sbjct: 402 RIAEEELEKTINQFQRLADNVPGMIYQYLHTVDGKSEFTYISPHSKDIYELESYEIIADM 461 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 F + ++ +S + T K ++ S+ Sbjct: 462 DHFFQLHHPHDFHLICDIAK--VSDPNSKPWNWEGRIITPSGKTKWIQGRAHPEILSNGD 519 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + DI+E K + K+ E+ ++ + + EI Sbjct: 520 ILWDGLVTDITERKAYEEKIKQLSTAVEQSANAI--MITNAAGEI 562 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 49/401 (12%), Positives = 109/401 (27%), Gaps = 27/401 (6%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLT 244 R N +F + + V +K I L + L Sbjct: 37 RREINRLNEELVLAKSRFESIVKNSADGILVLDDKGHIVYANPATHALFGVAPQSLLGLD 96 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 Y + E L P + + + +L + Sbjct: 97 FGYP----AVCGETTELDLPRHHGQPTVVEMRVADTEWEGRHASILSLHD---------- 142 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 + + + V V+ GN+ NP L Y +++I+ Sbjct: 143 VTERKKVEDALQKERDFAESLVATAHAIIAVFDLDGNIIQINPFAESLIGY-PLENIKGQ 201 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L L + ++T + + T+ + A+ + + Sbjct: 202 NWF-KLFVPEHDRAEGKNIFHELTKENKTQ----SHISTVISANGSQYAIEWYCKTLTDT 256 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + GI + + + ++ + E + GI + EG ++ N A++K Sbjct: 257 RGKIIGVLGIGIDISERLQAEFALKASEERFRGFFENSPIGIFQSSFEGKLIHINPALAK 316 Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + GY T F + + L D Q + + E++ L Sbjct: 317 MIGYDSVKEAMDHVTNFGAQFYDKLETRKKIVAITLKSDDFQFFDLVFRKKENEKRYGKL 376 Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580 I + + D ++ + + +L ++ Sbjct: 377 FIRAVRDDKGRPKYIEGLIEDNTDRRIAEEELEKTINQFQR 417 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 49/430 (11%), Positives = 122/430 (28%), Gaps = 43/430 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W ID GY+ + + + +G +IG L D+ + K Sbjct: 804 LWVIDEEGYITFANRRMSEMLGRSVEDIIGTPLQDLIHPDEKENLQIYFYRWKLGIEEPQ 863 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G+ L+ ++ A+ I+ +F+G G ++ K +K Sbjct: 864 DLKFRKLNGSILWGIVNTAS--IFDEFGKFTGALG--MLTDITERKFAEEQLKSSQQKLK 919 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLT 263 H E + + I S + K + ++ + + Sbjct: 920 HHIESTPLAAIEFDMSFKIVSWNPAAEKIFGFKKEEAFGKHVRVLIPNTEWQAVYNEWTD 979 Query: 264 SEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDE 317 + F + + Y L +N+ + + + A E Sbjct: 980 LLQKQSGSVHTFANLTKSGKHIQCNWYSTPLIDNTGNTIGIAALAEDITEKKLAEAALIE 1039 Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + + + + N + + Y S + I + + L Sbjct: 1040 SQKSLTAIFESIDAAVISIDYNMQIVMFNKAGETIFGYTSAEIIGQSFDI---LLPEDSQ 1096 Query: 377 DNNAIKPVMLYRSDRTCIAA--SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + +S +T + L ++ + + A I P + Sbjct: 1097 HVHISEIIEFSQSSQTILKISDEKGLFGLRKHASSFPAEASISKLMVGGKP---LMVILL 1153 Query: 435 PEDVDTRINKRKMEIEVMQLCSI----------LEATSDGI---------AIINREG--I 473 + + + + ++ + ++ SI + I + + EG Sbjct: 1154 NDITERKKMQEQI-LRAQRMESIGLLASGIAHDMNNILTPIMMSMELLKEIVDDEEGFER 1212 Query: 474 ILSTNRAVSK 483 I + N++ + Sbjct: 1213 IQTINKSTRR 1222 >gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272] gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273] Length = 545 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFRLNMGT 393 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 394 VDMKGILEDIHMVLDNKAGEKEISLQVNGLKRV-SVIGDPSRLKQIFINLINNAIVYTPA 452 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 453 GGVVSVEL-LEDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539 >gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 724 Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats. Identities = 111/509 (21%), Positives = 202/509 (39%), Gaps = 25/509 (4%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLS 367 D G+ + ++ N+ YAN F + +SVDD++ G + Sbjct: 78 AEDLGQRQYRLIAEATGDAVWMAEVDPATLDRNIVYANSGFEEIWG-RSVDDLKSQGCVY 136 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + + + + + ++ + Sbjct: 137 NRWIHKEDYNWVGDALTGFLKGE----HGCDIEFRVMRPDGAVRWVWTRADRFLDESGQI 192 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G + + ++ E S+ + +SD I I+ +G N A +L G Sbjct: 193 KFVVGFSRDITQLKSSRLAQEESERYYRSLFDNSSDAIRIVAMDGSTTDVNPAFERLIGR 252 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 E +L + + +I+ EK T E + + + Sbjct: 253 KREAVLSLGCEDLTPPEWLPMEREIIEKQIMVRGYSDVYEKEYY--TGEGGRVQVAMRSS 310 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + ++ DISE K +L AK AE +S K FLA VSHE+RTPL Sbjct: 311 LIRSANGEPTAICGIARDISEQKSRHEELMKAKLAAESANSAKDRFLAMVSHELRTPLNP 370 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G++E++ + +P + I S + +V+D+LD S IESG++++ E Sbjct: 371 IVGYAEILA----AKIEDPMAQRFLKIIKESAKGMASLVSDILDYSMIESGRIDIEVETF 426 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + +S ++ A E+ I+ P + AD R + Q+ N+++NA FT +G Sbjct: 427 RMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQVVSNLVANACKFTQNG 486 Query: 723 GQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I S+ +++E V + V DTG+G+ ELE +PF Q+ + + G GLGL Sbjct: 487 KILISSSASQTSKEAYSVRIEVSDTGIGIPESELETIFEPFEQLGSVHKAETRGVGLGLA 546 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + +V A G + S GT+ + Sbjct: 547 ICRQLVGALGGTISVSSQLGSGTIFTVDL 575 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 16/249 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G +++ + IG ++ + D++ + I +++Q G + ++ Sbjct: 236 DGSTTDVNPAFERLIGRKREAVLSLGCEDLTPPEWLPMEREI---IEKQIMVRGYSDVYE 292 Query: 152 IE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------NDPRALGKRL 200 E G V + + + I S N E + GI A Sbjct: 293 KEYYTGEGGRVQVAMRSSLIRSANGEPTAI--CGIARDISEQKSRHEELMKAKLAAESAN 350 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 K L + + + M + + + A L ++ Sbjct: 351 SAKDRFLAMVSHELRTPLNPIVGYAEILAAKIEDPMAQRFLKIIKESAKGMASLVSDILD 410 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E + + + ++ + ++ + P + A + Sbjct: 411 YSMIESGRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQ 470 Query: 321 LTPETVDKC 329 + V Sbjct: 471 VVSNLVANA 479 >gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42] Length = 571 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 478 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S KGT ++ P Sbjct: 538 KHLVEAHHGTITVDSEVGKGTTFTVVLP 565 >gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 642 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 107/526 (20%), Positives = 221/526 (42%), Gaps = 41/526 (7%) Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 +N+ + PI + S NP+ + +K + + + + + + Sbjct: 8 QQNMFAHVFNYAPIGIALISLDRRWIDVNPAACQILGHKRSE-LMTLDPAELIFSSRREN 66 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + K ++ + + + + I + + + Sbjct: 67 LSRKFKQLL----EGKIPTLNLEKRYLLKDGAIVWVSLHISLVRDGSDGQPWYYIAQIVD 122 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 T+++++K++ V + S+ + D I + +G I+ N KL G V +++ Sbjct: 123 ITATKMSEQKLQESVERYTSLKKYNHDTIISFDLQGKIIGGNVMAEKLTGRLVSELIGTS 182 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---C 553 + ++ + + ++ ++ + + + + + I + ++ Sbjct: 183 IASVIGEDKLARILADNEPY--TEIESSINDVLHV---DGSYVEVLVTIAPIIVNNRSIG 237 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + L + DI+E K+ + K+ A + + KS+F+A +SHEIRTP+ +IG ++++ + Sbjct: 238 FYLLIKDITEQKKLLIE----KETAVRTNEVKSEFMAMMSHEIRTPMNGVIGMTDLLLDT 293 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + EY I +SG +L I+ND+LD SK+ESG L EP +L+ A++E Sbjct: 294 PL----DEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAETFD 349 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731 + A EK + + + IP+ I+ D ++QI LN++ NAI FTP G + I Sbjct: 350 TLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPRGSIGVSIDKAE 409 Query: 732 TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V V+DTG+G+ ++ +PF Q + + GTGLGL + + +V Sbjct: 410 AEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQLMD 469 Query: 790 GKFYIFSTPAKGTLIEI----------IFPLYDT-----SHPHDCI 820 G+ Y P GT+ P++++ P + + Sbjct: 470 GQIYCEPNPGGGTIFRFHILIQAELLTSIPVHESITEKAPQPEEEL 515 Score = 43.5 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 16/193 (8%), Positives = 54/193 (27%), Gaps = 9/193 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQN-TWYGK 146 I +++ + +G+ +++ + ++ + + LL+ + T + Sbjct: 26 ISLDRRWIDVNPAACQILGHKRSELMTLDPAELIFSSRRENLSRKFKQLLEGKIPTLNLE 85 Query: 147 TTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G V + L + + + + + + ++++ Sbjct: 86 KRYLLKDG--AIVWVSLHISLVRDGSDGQPWYY--IAQIVDITATKMSEQKLQESVERYT 141 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L + + I L R+ +++ + +D L Sbjct: 142 SLKKYNHDTIISFDLQGKIIGGNVMAEKLTGRLVSELIGTSIASVIGEDKLARILADNEP 201 Query: 264 SEESSLPEQEDFH 276 E + H Sbjct: 202 YTEIESSINDVLH 214 >gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 914 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 103/505 (20%), Positives = 187/505 (37%), Gaps = 22/505 (4%) Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + P + + + Y NP F L Y D P + Sbjct: 5 DRFEQLTECSPFGISISNEDLVNEYVNPKFTELFGYTLDDIPTKGIWFEKAYPDPAYREM 64 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF--EKANQFPENMPQNGIEPE 436 R ++ + + F P + Q + Sbjct: 65 VIQMWRADTERTIKTGTMDPRTFKVRCKDGSDKMIRFRPVDLGEGKQLLTYENRTDEIAA 124 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + ++ E +L S++ +G+ + + ++ N EDIL K Sbjct: 125 ETALKASEEAARHEAAKLSSMISGMEEGVVFADSDNRVVEVNGYFCDFMQKTREDILGKK 184 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 F + + ++ E +T+ K E +L ++ I + L Sbjct: 185 LEDFHSKEISDKIVGHIGEFRKNPHSKTVVKQRSIGDAE-TILRVQ-PIYRENHYDGVLL 242 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + +++E + ++ AE S K FLA +SHEIRTP+ A+IG +E++ Sbjct: 243 NVINVTELVKA-------RREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELLLGTDLD 295 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 EY + + N +L ++ND+LD SKIESGK+ L + ++ Sbjct: 296 T----EQQEYVEIVKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMA 351 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TS 733 A K++ + R+L D ++Q+ +N+ NA+ FT G + I Sbjct: 352 PNAQTKQLEFTCFVDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEKG-NVDIHAAMIGEE 410 Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V++R + DTG+G+ E F Q+ S + EGTGLGL ++K +V G+ Sbjct: 411 DGMVLIRFAISDTGMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGGR 470 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 + S G+ P P Sbjct: 471 MGLDSEVGVGSTFWFTLPFAKQDQP 495 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 8/148 (5%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + + E + GI+I N + + N ++LFGY ++DI K Sbjct: 4 KDRFEQLTECSPFGISISNEDLVNEYVNPKFTELFGYTLDDIPTKGIWFEKAYPD-PAYR 62 Query: 511 HYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + ++ D +T++ + K+ +R L LT + ++ Sbjct: 63 EMVIQMWRADTERTIKTGTMDPRTFKVRCKDGSDKMIRFRPVDL-GEGKQLLTYENRTDE 121 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARV 592 + L +++ A E++ S ++ + Sbjct: 122 IAAETALKASEEAARHEAAKLSSMISGM 149 >gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987] Length = 587 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 747 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 110/510 (21%), Positives = 208/510 (40%), Gaps = 28/510 (5%) Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + P + G N SF ++ Y + + + G L Sbjct: 11 QRDALQQLEHVFGAQPDAVLLSRLTDGVFVKVNRSFTTISGYSAEEVL----GKDGLTLN 66 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 S + L R D + N E + P Sbjct: 67 IWRSPEDRRHWAELMRRDG--YCVGLEFQFRRRNGELRTCLLSSQTVMIRGVP---HAIS 121 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVED 491 I + + + + +++ + I E +D I + + + ++ KL GY + Sbjct: 122 IIHDITERKQIEAELQRSEARYRLIAENATDVIWLFDPVRMRFTFFSPSIHKLIGYSAAE 181 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSL-----DLRQTLEKITLGSTKEEKLLSLRIIIK 546 F FL + ++ L +L+ ++ ++ II Sbjct: 182 AQEMSFADFLTVESAQHVHSALQYMLNHWEGDLTTAPPWVAEIDLIHRDGHVVQAEIITS 241 Query: 547 KLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + + DI+ KQ + L A++ AE + KS FLA VSHE+RTPL A+ Sbjct: 242 FVRDEEQRLIVLGVARDITARKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAV 301 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GF++++ N P EY I+RSG +L ++N++LD++KIE+G+ + P++ Sbjct: 302 LGFAQLLANDNN---LTPTQQEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLN 358 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 + + + + L + A K++ + + A N+P I++D ++QI +N+LSNAI FT G Sbjct: 359 VRQLIEDVQLLFRNRAEAKQLHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDVG 418 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLA 781 + + + ++ V DTG+G+ + +K +PF Q + + G GLGL ++ Sbjct: 419 S-VHLHV-IREEQRLLFTVEDTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSIS 476 Query: 782 KAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 + G ++S G+ ++ PL Sbjct: 477 YELARLIGGDLSVYSEGRGCGSRFTLVIPL 506 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 31/312 (9%), Positives = 81/312 (25%), Gaps = 24/312 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G +++ G A +++G ++ + H +L++R G + Sbjct: 36 DGVFVKVNRSFTTISGYSAEEVLGKDGLTLNIWRSPEDRRHWAELMRRDGYCVGLEFQFR 95 Query: 152 IEGTNLYV------PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 L + + +P I+H A +R + ++ Sbjct: 96 RRNGELRTCLLSSQTVMIRGVPH-----------AISIIHDITERKQIEAELQRSEARYR 144 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + E + F+ SP H + + E +++ ++ + Sbjct: 145 LIAENATDVIWLFDPVRMRFTFFSPSIHKLIGYSAAEAQEMSFADFLTVESAQHVHSALQ 204 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + D T + ++ E ++ G Sbjct: 205 YMLNHWEGDLTTAP---PWVAEIDLIHRDGHVVQAEIITSFVRDEEQRLIVLGVARDITA 261 Query: 326 VDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + + AN +FL ++ + G + LL + Sbjct: 262 RKQAEVALRIARQ-QAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLANDNNLTPTQQE 320 Query: 383 PVMLYRSDRTCI 394 + + + Sbjct: 321 YLAIINRSGEHL 332 >gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1271 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 137/752 (18%), Positives = 266/752 (35%), Gaps = 46/752 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G L + L K G G + D + + + + + + Sbjct: 403 LDADGCLVRWNSNLAKMTGLDEQSFAGRSILDFVAPTSRNAFIEAMEKVLTEG-LATQES 461 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG---FRGFGIVHVNRVDNDPRALGKRLDKKFS 205 G +P I E G G G+ R + Sbjct: 462 YLQTMGRQQ-IPFAFQINRI-----EIEGKLYLSGMGV--DISEQLSMRHALQESQDILD 513 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + ++ + V K + P R + + L H L Sbjct: 514 QVQKVAQLGGIVWKPASGFMQWSAQVYPMLGLQPGQRSLSLRTLLHGLSRHARKGLLQRL 573 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----Y 314 L + + + + + Q++ +E + L + Sbjct: 574 GELRDTRHHVIERELHLLGFDGIKRYLHLRGQHRQSHDQEHPQILITLQDLTPHKIIQHQ 633 Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ PIP F AN +F L + ++ + T Sbjct: 634 LQHQLTFQQTLLNTIPIPVFYKDRQLRYQIANEAFSKLLN-QPLETLIGRTVYET----- 687 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + I + + TIQ +N + F + ++ G Sbjct: 688 SPLEMAKIYDIADHNLLDHPDRVQQYQATIQPQSDNPHHVVFYKAVVPGEQGQHAGIVGA 747 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492 + + ++ +E + ++L + + + N ++L TN A FG + Sbjct: 748 ILDVTEQTRAQKALEESNRRFETVLGSLESYLFVTNIESNMVLFTNHAARLRFG----ET 803 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + +P + + + ++RI + Sbjct: 804 VGQPCWKTFHLGCKEGGCQSCIQGGASIPHHGHHWEYHNKE-SGEWYTIRIRLIPWTDGH 862 Query: 553 CY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 L +DI+ KQ + A + AE+ + KS+FLA +SHEIRTP+ ++G S+++ Sbjct: 863 YVRLLVANDITVLKQAQEASRQAMEQAERANRAKSEFLATMSHEIRTPMNVVVGMSDILL 922 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 L NP+ ++ I ++G +LD++ND+LD+SKIE+G++ L + + + Sbjct: 923 E----SLPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQLELEHAVFNPILLIEDT 978 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I++ Q+ A K + + +S +IP ++ D ++QI +N+L NAI FT G + + Sbjct: 979 IAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLGNAIKFTEKGS-VEVQAG 1037 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +N++ V D+GVG+ + L + F Q + R G+GLGL + K +++ G Sbjct: 1038 Y-ANQQFWYAVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGGSGLGLAICKNLMELMGG 1096 Query: 791 KFYIFSTPAKGTLIEIIF--PLYDTSHPHDCI 820 ST +G+ P+ D P D + Sbjct: 1097 TIETQSTLGQGSRFYCAIPAPIADHLLPSDVV 1128 Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 46/348 (13%), Positives = 108/348 (31%), Gaps = 16/348 (4%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 VS+ A D K SL + N T K + L+ ++ Sbjct: 182 VSAKPLDAAQVDVTQKLVASHAGIWLLMSLILGLVWRRHNRYVETIKAHEQQLETRVQDR 241 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358 + L N + + + +D P V + N + Y Sbjct: 242 TDALRQAND-----RLERDRSQLQQIIDGVSEPLMVIRTDYRIVLMNEAARS---YNPEL 293 Query: 359 DIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + A L+ + + P L + RT I + + ++ Sbjct: 294 ATKQANCYCHLMTHQRNTPCEGHDHPCPLEQVVRTQQPFRTVHRHINRDG-LARFVSLQA 352 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 +Q + + + +++ E +I++A S +++ +G ++ Sbjct: 353 SPLFDQNGALWAIIESSRDITEYMSMQEQLKQESDTSNAIIDALSGLFILLDADGCLVRW 412 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N ++K+ G + + F+ + + + ++L+ L + + T + Sbjct: 413 NSNLAKMTGLDEQSFAGRSILDFVAPTSRNAFIEAMEKVLTEGLAT---QESYLQTMGRQ 469 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + I ++ S DISE ++ L ++ I ++ Sbjct: 470 QIPFAFQINRIEIEGKLYLSGMGVDISEQLSMRHALQESQDILDQVQK 517 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 42/362 (11%), Positives = 94/362 (25%), Gaps = 20/362 (5%) Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 R+ + L + LT + ++ + Sbjct: 53 ARVTAETQPNPFLKNLPQRDLTSTDGVALTLINPAYMTRQIAELARHSGMLFHITSLKPL 112 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + + + + + E L +Y + Y S L Sbjct: 113 RPANRPDNWEAEALKRFETNPSERLERLGHG-------DSALYRYMAPLYVEQSCLKCHA 165 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + +I GG+S + A L L S + + + W R N Sbjct: 166 TQGYQLGDIRGGISITVSAKPLDAAQVDVTQKLVASHAGIWLLMSLILGLVWRRHNRYVE 225 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 T E+ + + + R ++E + QL I++ S+ + +I + Sbjct: 226 TIKAHEQQLETRVQDRTDAL-------RQANDRLERDRSQLQQIIDGVSEPLMVIRTDYR 278 Query: 474 ILSTNRAVS----KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 I+ N A +L L +++ Sbjct: 279 IVLMNEAARSYNPELATKQANCYCHLMTHQRNTPCEGHDHPCPLEQVVRTQQPFRTVHRH 338 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + +SL+ + +++ DI+E+ + +L + S Sbjct: 339 INRDGLARFVSLQASPLFDQNGALWAIIESSRDITEYMSMQEQLKQESDTSNAIIDALSG 398 Query: 588 FL 589 Sbjct: 399 LF 400 >gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26] Length = 558 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHHGTITVDSEIGEGTTFTVVLP 552 >gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1] gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1] Length = 587 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEIGEGTTFTVVLP 581 >gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97] Length = 587 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEIGEGTTFTVVLP 581 >gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187] Length = 587 Score = 366 bits (939), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L+ Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEIGEGTTFTVVLP 581 >gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture clone pWThLOV] Length = 1204 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 124/753 (16%), Positives = 279/753 (37%), Gaps = 38/753 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 +DA G + + +M G L +V + N + L T Sbjct: 328 LDAEGRYVQCGTAAQHLLHMPFEQMRGASLEEVLPPAVAVQHKNALQRALATG-TLQRVE 386 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G + +P+ SG + IV + + + Sbjct: 387 YELQPMGDPTTRTFEGRFMPM-------SGTQVLLIVRDLTELRTMERELQIMHRAIEGE 439 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + V + + L +++V + + + + + Sbjct: 440 ASLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPALGQVREAL 499 Query: 266 ESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 H + +++ + + + ++ ++ + + + E ++ Sbjct: 500 RHGRSTTVVLHNYRKDGSRFINELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSE 559 Query: 324 ETVDK----CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E V + G+ + NP+ + + + G LL Sbjct: 560 ELYRSVALSISDGLMVVTSGSYVVAVNPAACRILDATMEELVMAPGL--ELLTESLQPLP 617 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA-NQFPENMPQNGIEPED 437 A PV + + R++ ++ + + + + Sbjct: 618 PAEHPVARALASGE--PVTERVYGLRRRDGQIRWLGVSAQPLRMAPHDKPLSAVVTFRDI 675 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496 RI ++ + + + +E + DG+ + + +R +L GY ++ P Sbjct: 676 TQQRIAEQALSMSEQRWKFAIEGSGDGVWDWDAVADRVYYSRRWKELLGYQEHELTDSPE 735 Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSS 552 ++ + + L + D+ + + L + +++ Sbjct: 736 EWSSRVHPEDLPRVLEKLE-LHLKDVVPVYHSEHRLRHRSGRWLWVFERGRVVQRNEQGR 794 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 T DI+ K+ + L K+ AE S K++FL+R+SHE+RTPL A+IGFS+++ Sbjct: 795 ALRIVGTYSDITRLKEAEKALRD-KQAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQLL 853 Query: 611 KNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 K + YA+++ ++G +L ++ND+LD+ ++E+G++ ++ E +SL + Sbjct: 854 KLSATNAQPSASQVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRTIE 913 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +A+ L+ A+ + ++ + AD + ++Q+ +NI+SNAI + G + ++ Sbjct: 914 QALELLAPLAHASAVSFDNRIDEDVL-VRADAQRLRQVLINIISNAIKYNRPDGVVRLTL 972 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + + + DTG G+ +L + +PF ++ EGTGLGL +AK ++D Sbjct: 973 GDRQGDAIDVLIEDTGEGLRPDQLARLFQPFERLGRETSP-IEGTGLGLIIAKRLIDEMK 1031 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD---TSHPHDC 819 G + S P KGT + ++ L + + PH+ Sbjct: 1032 GSIEVSSEPGKGTCVTLMVRLAEQAPAALPHEA 1064 Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats. Identities = 65/540 (12%), Positives = 165/540 (30%), Gaps = 39/540 (7%) Query: 71 ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILH 126 + V + W DA G S + G +G ++ D H Sbjct: 170 QEARVRTASRAGSDWLWETDAQGRFTWASASMETHTGLRIEDKLGKLPHEILLRRDDPEH 229 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-- 184 + +++ ++ G V + + +P++ F G+RG V Sbjct: 230 ARSYDRYLAAREQREPFFNLIADMRTPGGL--VTVAVNGVPVFDSAGRFRGYRGATRVVT 287 Query: 185 -------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--R 235 A + + + + + + V + + HL Sbjct: 288 AEIEAQRQAREAQALREAQLRESEARTAAVLQSLPDLWFVLDAEGRYVQCGTAAQHLLHM 347 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 ++ + V K L + + ++ ++ + T + + G Sbjct: 348 PFEQMRGASLEEVLPPAVAVQHKNALQRALATGTLQRVEYELQPMGDPTTRTFEGRFMPM 407 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVD---KCPIPF--FVYSHGNLFYANPSFLL 350 S + L + + + ++ PI + + Y NP+F Sbjct: 408 SG--TQVLLIVRDLTELRTMERELQIMHRAIEGEASLPITVVDVLAPDHPVVYVNPAFER 465 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 LT Y + + G + +D A+ V LH + + Sbjct: 466 LTGYGRDEVL----GRNCRFLQGPETDQPALGQVREALRHGRSTTV--VLHNYRKDGSRF 519 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + G++ + + I ++ + S+ + SDG+ ++ Sbjct: 520 IN-ELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSEELYRSVALSISDGLMVVTS 578 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKI 528 +++ N A ++ +E+++ P L ++ + H + L+ E++ Sbjct: 579 GSYVVAVNPAACRILDATMEELVMAPGLELLTESLQPLPPAEHPVARALASGEP-VTERV 637 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++ ++ L + + L + +T DI++ + + LS +++ + Sbjct: 638 YGLRRRDGQIRWLGVSAQPLRMAPHDKPLSAVVTFRDITQQRIAEQALSMSEQRWKFAIE 697 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 43/417 (10%), Positives = 96/417 (23%), Gaps = 44/417 (10%) Query: 191 NDPRALGKRLDKKFSHLHEIKKG--------HSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + L R+ + + H + E + + + V Sbjct: 33 DAAVRLLARMARVPIATLSLVDAGRVWFKAIHGAELDELSRDQTCCTWTIAGDVPFLVDD 92 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQE----DFHTINLNQYTKKQYFGTLQNNSKE 298 LT T + L ++ +++ + ++ Sbjct: 93 LTADPRFAGVRTVTGAPYVRAYAGLPLTVEDQRIGALAVLDVQPRHFGEAELAALHDVGR 152 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357 L E T + G +A+ S T + Sbjct: 153 LVCELLKARLKEQRWRLQEARVRTASRAGS--DWLWETDAQGRFTWASASMETHTGLRIE 210 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 D + L + + + A + T + + Sbjct: 211 DKLGKLPHEILLRRDDPEHARSYDRYLAAREQREPFFNLIADMRTP----GGLVTVAVNG 266 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLC-------SILEATSDGIA 466 + G +R+ QL ++L++ D Sbjct: 267 VPVFDSAGRFRGYRGATRVVTAEIEAQRQAREAQALREAQLRESEARTAAVLQSLPDLWF 326 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +++ EG + A L P E + L + L L+ Q +E Sbjct: 327 VLDAEGRYVQCGTAAQHLLHMPFEQMRGASLEEVLPPAVAVQHKNALQRALATGTLQRVE 386 Query: 527 KIT------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 T E + + + L + D++E + + +L + Sbjct: 387 YELQPMGDPTTRTFEGRFMPMSGT--------QVLLIVRDLTELRTMERELQIMHRA 435 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 60/494 (12%), Positives = 132/494 (26%), Gaps = 78/494 (15%) Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA-----AL 166 +G +C++ + + + R + G LW + + + L Sbjct: 148 HDVGRLVCELLKARLKEQRWRLQEARVRTASRAGSDWLWETDAQGRFTWASASMETHTGL 207 Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 I + + L +R D + + ++ + +++ + Sbjct: 208 RIEDKLGKLPH----------------EILLRRDDPEHARSYDRYLAAREQREPFFNLIA 251 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 P L + P+ S + + ++ Sbjct: 252 DMRTPGGLVT-----------------VAVNGVPVFDSAGRFRGYRGATRVVTAEIEAQR 294 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN 345 Q + A E E T + P +FV G Sbjct: 295 Q----------------AREAQALREAQLRESEARTAAVLQSLPDLWFVLDAEGRYVQCG 338 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + L + + A L P + + T L + Sbjct: 339 TAAQHLLHM-PFEQMRGASLEEVL---PPAVAVQHKNALQRALATGTLQRVEYELQPMGD 394 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + F+P I + + R +R+++I +I S I Sbjct: 395 PTTRTFEGRFMPMSG-------TQVLLIVRDLTELRTMERELQIMH---RAIEGEASLPI 444 Query: 466 AIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +++ + ++ N A +L GY +++L + T + E L Sbjct: 445 TVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPALGQVREALRHGRS 504 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 T+ + K+ + I + S + DI+E +L ++++ Sbjct: 505 TTV--VLHNYRKDGSRFINELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSEELY 562 Query: 579 EKESSHKSDFLARV 592 + SD L V Sbjct: 563 RSVALSISDGLMVV 576 >gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ] gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter lovleyi SZ] Length = 1193 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 115/625 (18%), Positives = 233/625 (37%), Gaps = 26/625 (4%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + S + E D + + +V+ + + L+ Sbjct: 423 ERSDGLHFHVTLRPSDWQPEAGDCSNSNHHEVDSALHRRVADMEQELHSTRHSLQLTIEE 482 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L +S E E+ + N + + ++ + L HRN D Sbjct: 483 LQSSNEKLDLANEELISSNEELQSTNEELKSVNEDLYAVNSELEHRNEELQRLNRDHDNL 542 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 L V F+ + + + K D ++ L +P+ Sbjct: 543 LASTEVGT----VFLDQQLRIRKFSSAISAFLKLLPQDLGRPIDHIAYELGSPQEFRERL 598 Query: 381 IKPVMLYRSDRTCI------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + I R+ + + + + + + + Sbjct: 599 QQVLESGLRHEQEIHTGADQWVLQRILPFRTDNGSIDGVVLTFTDISAVKQAQAAVAEMN 658 Query: 435 PEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + I + ++ ++ + +E + G + + + + N A+ + GY E++L Sbjct: 659 IQLEQKVIERTCELSASEARIRAFIENSGQGFWQLGPDRLTIDLNPALCSMLGYRREEML 718 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + F++ S+ + + I + R K+ + + Sbjct: 719 GRSPLEFVDAENRSIFLYQMGRIDGTEHR---NYEITLLHKDGHPVPVMFSATTHRTVEG 775 Query: 554 YS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + D+SE K+ + ++ AK+ AE + K+ FLA +SHE+RTPL I+G S + Sbjct: 776 KVDSAFAFITDLSEQKRVEQEIRAAKEAAESANRAKTQFLANISHEVRTPLNGIMGMSHL 835 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + +Y ++D S +L ++NDLLD+++IESG LD+ Sbjct: 836 LHMTPLA----DEQQDYLRHLDDSAQSLLSVINDLLDLTRIESGGFGTEQADFQLDQLAR 891 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-II 727 + + + Q A K +L++ A+ +P + +KQ+ N++ NA+ FT G + I Sbjct: 892 DILRIHQPVAQRKGVLLQLELADGMPGLLRGVPLRLKQVLHNLVGNAVKFTDQGRVVLSI 951 Query: 728 STTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S + V V D+G+GM +++ PF Q S R GTGLGL + + + Sbjct: 952 SPIIVPGQSLRVRFAVCDSGIGMEPETIKRIFDPFSQADESISRRYGGTGLGLTICRRLT 1011 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + G + STP +G+ +I P+ Sbjct: 1012 ELMGGTIEVESTPGQGSCFTVILPM 1036 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 66/245 (26%), Gaps = 10/245 (4%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W + +++ L +G +M+G + D + + + + Sbjct: 691 WQLGPDRLTIDLNPALCSMLGYRREEMLGRSPLEFVDAENRSIFLYQMGRIDGTEHRNYE 750 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 TL +G VP+ +A + + F + + + Sbjct: 751 ITLLHKDGHP--VPVMFSATTHRTVEGKVD--SAFAFITDLSEQKRVEQEIRAAKEAAES 806 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + K + + +P + + + +T + D L S Sbjct: 807 ANRAKTQFLANISHEVR-----TPLNGIMGMSHLLHMTPLADEQQDYL-RHLDDSAQSLL 860 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 S + + D I + +Q L +++ E + P + Sbjct: 861 SVINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQRKGVLLQLELADGMPGLL 920 Query: 327 DKCPI 331 P+ Sbjct: 921 RGVPL 925 >gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 676 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 133/530 (25%), Positives = 230/530 (43%), Gaps = 24/530 (4%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353 + + ++ + +D + G + NP+ L Sbjct: 142 DGGQLRILRDITQRKQAQISLEDTVSWLKGVMDTVVDGIVTIDETGTVLSFNPAAEKLFG 201 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + G+ L+ P+ A P L + ++ N Sbjct: 202 WSADQVVGRHVGM--LISDPRQDGRGAGFPAYLANGFPEAGPGGREVEGLRRNGTRFPM- 258 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-------MQLCSILEATSDGIA 466 + + G+ + + R N+ + +L I++ G+A Sbjct: 259 --ELAVAEMHQGDMLTFIGVIRDVSERRKNELALLDSKNRLSLQADRLQGIIDNMPQGVA 316 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTV-----FLEQNTPSVMN--HYLTEILSL 519 + + +++ N + ++ G P +I + L N LT L+ Sbjct: 317 VFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMALLAANDTPPGRHSAQLTADLAE 376 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 +R+ E + ++ +R L+ D+++ K+ + L AK AE Sbjct: 377 SVRERPEMVFEHFAPSGLIMEVRSSSMP---GGGLILSFTDVTDRKRVEQTLREAKDEAE 433 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + K+ FLA +SHE+RTPL AIIGFSE++K++ FGPL Y Y + I SG +L+ Sbjct: 434 RGNRAKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRTYVDDIHESGMHLLE 493 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+LD+SK E+G +L V + + V AI L+ A I + +P +LA Sbjct: 494 LINDILDMSKAEAGMTDLMEAAVHVPDLVRGAIRLLTRRAENAGITLSEDLPPTLPLLLA 553 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D R ++Q+ LN+ SNA+ FT GG + I T + + V DTG+GMT EL + M+P Sbjct: 554 DERRLRQVILNLGSNAVKFTDDGGAVTIGAKVTEAGFI-ITVADTGIGMTPEELLRVMEP 612 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F Q + EG+GLGLPLAKA++ A+ G ++ S P +GT+ + FP Sbjct: 613 FVQADTRLSRKYEGSGLGLPLAKALICAHGGTLHLDSQPGRGTVATVTFP 662 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 15/128 (11%), Positives = 41/128 (32%), Gaps = 6/128 (4%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQN 504 +E + L + L + DG+A+ ++ +++ N +L + F + + Sbjct: 39 ALESQRQLLEA-LGNSRDGVALYDKTNRLITCNERYRQLLSPIKESLVPGARFEDLMAEL 97 Query: 505 TPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 T + ++ + +++ + DI++ Sbjct: 98 ANLEHMDAAWLGRKLSGGGLTDATASDDKFRDGQWITVNAYATL---DGGQLRILRDITQ 154 Query: 564 WKQEKNKL 571 KQ + L Sbjct: 155 RKQAQISL 162 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 58/204 (28%), Gaps = 12/204 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYG-- 145 ID G + + K G A +++G + + D L G Sbjct: 183 IDETGTVLSFNPAAEKLFGWSADQVVGRHVGMLISDPRQDGRGAGFPAYLANGFPEAGPG 242 Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + GT P++LA ++ + F G++ + Sbjct: 243 GREVEGLRRNGT--RFPMELAVAEMH--QGDMLTF--IGVIRDVSERRKNELALLDSKNR 296 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 S + +G + +F+ ++ L + + + LL Sbjct: 297 LSLQADRLQGIIDNMPQGVAVFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMALL 356 Query: 263 TSEESSLPEQEDFHTINLNQYTKK 286 + ++ T +L + ++ Sbjct: 357 AANDTPPGRHSAQLTADLAESVRE 380 >gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 962 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 110/508 (21%), Positives = 213/508 (41%), Gaps = 23/508 (4%) Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + +DK + + G + AN L+ + + + + + + Sbjct: 8 RQAMDKHGMVVTMDVKGKILSANEKCSELSGFAEHEIVGKYITAFDITNISNSDISAIFS 67 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + L +H+++ E + + P I + + Sbjct: 68 ALALGNI------WQGEVHSLRKTGEPWF-VFATVVPVVKKAPLVDHLIVIATDISQQKR 120 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + SI ++ +G+ +N EG N A S+L G+ +E++ + F + Sbjct: 121 LEKSLSEGRAFYRSITDSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVH 180 Query: 503 QNTPSVMNHYLTE----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCY 554 + + D + + K +L + I+ L + + Sbjct: 181 YQKGDGTLLKREQCPVNLTIRDGKSYTSYEDFFTDKRGRLFPISIVAVPLLNNEGKPDGH 240 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 +DIS K ++KL A A+ + K+DFLA +SHEIRTP+ AIIG + + + Sbjct: 241 VGVFNDISSQKAIEHKLQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQ 300 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 N + +Y + +S N +L+++N +LD SK+E+ K+++ EP +L + + + + Sbjct: 301 ----DNDQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQV 356 Query: 675 VQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q+ A +K++ + + R D + Q+ LN+LSNAI FT +G +++ Sbjct: 357 FQVKAQQKQLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTETG-HVLLKIDKR- 414 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E+ V DTG+G+++ K F Q S + GTGLGL + K +V+ G+ Sbjct: 415 GNELGFSVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELT 474 Query: 794 IFSTPAKGTLIEIIFPL-YDTSHPHDCI 820 I S +GT P+ + + P D + Sbjct: 475 IESKVNEGTNFAFSLPICIEDTEPSDSL 502 Score = 43.5 bits (101), Expect = 0.15, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 44/150 (29%), Gaps = 11/150 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKR 139 + ++A G + ++ + +G ++ R D D + ++ Sbjct: 143 VYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVHYQKGDGTLLKREQCPVNLTIRD 202 Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 ++ + G PI + A+P+ + + G G+ + + Sbjct: 203 GKSYTSYEDFFTDKRGRLF--PISIVAVPLLNNEGKPDGH--VGVFNDISSQKAIEHKLQ 258 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + ++ K + + Sbjct: 259 KAYDEAQSANKAKTDFLATMSHEIRTPMNA 288 >gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 1364 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 130/700 (18%), Positives = 251/700 (35%), Gaps = 51/700 (7%) Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + PI + G+R GF GI P+ +++ Sbjct: 185 SGEPIMTSPISLFGYRVPSESGFLVLLGIYREGMPLQTPQQRMVATSGWVYAPFSVEQIV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ DI + + A + V+K T ++ P Sbjct: 245 QSALGERDDIALDMSDRNEPTHNFYRSGTPAIDSALRPPVVKLLPMYGRTWVITAHPTAS 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + + L N + L Sbjct: 305 FIASLNQNSPWLIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDI---------EIAGGLSTLLDAPKLSDNNAIKPV 384 G + + NP+ + Y + + I A + + A NA Sbjct: 365 AETPDGRITHWNPAAEAMFGYTAEEAIDQELTMLLAPQAYAMPEIDHADAALAANAWAAQ 424 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + D + A I E +L+ F + + + ++ ++ + Sbjct: 425 TMRHRDGHQVHVLASKSPI-IESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAE 483 Query: 445 R--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 R ++ + +IL I + G + N A K+ GY +++ + Sbjct: 484 RTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFI 543 Query: 503 QNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKL 548 + L + + TLE + + + L + + + L Sbjct: 544 EQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTL 603 Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 Y D++E K + +L A A+ + KSDFLA +SHEIRTP+ AI+ Sbjct: 604 RDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAIL 663 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +++ + IDRS +L+I+ND+LD SKIE+G+++L P L Sbjct: 664 GMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDL 719 Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ L++ + K + + + +L D + Q+ +N++ NAI FT G Sbjct: 720 NQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG- 778 Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++++S + + ++ VRDTG+G++ + PF Q S R G+GLGL Sbjct: 779 EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGL 838 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 +++ +++ G+ + S P +G+ + L ++ P + Sbjct: 839 TISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 878 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 31/375 (8%), Positives = 82/375 (21%), Gaps = 12/375 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + G A + I L + + T+ Sbjct: 368 PDGRITHWNPAAEAMFGYTAEEAIDQELTMLLAPQAYAMPEIDHADAALAANAWAAQTMR 427 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G ++ + + PI SG F L+ H ++ Sbjct: 428 HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + S + K + + + + S + + + + + Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQ 541 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E + Q + + + S + + + + Sbjct: 542 FIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 H + + LT+ K + + SD A + Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + L + + I + + + +E Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715 Query: 451 VMQLCSILEATSDGI 465 L + + ++ + Sbjct: 716 PFDLNQLFDNIAELM 730 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138 D+ G++ + K +G A ++IG R + + + L+ Sbjct: 509 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1364 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 129/706 (18%), Positives = 254/706 (35%), Gaps = 65/706 (9%) Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + P+ + SG+R GF ++ P+ +++ Sbjct: 185 SGEPVMTSPISLSGYRVPSESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ D+ + + A + V++ T ++ P Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N + + L N + L Sbjct: 305 FVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + + NP+ + Y + + I+ L+ LL + +D Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTMLLSPQPYAMPEVD------HADAAL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 ++ T++ + + + + + D + ++ Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I I+ G + N A KL GY +++ + Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGR 536 Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + F+E H L E + TLE + + + L + Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+GLGL +++ +V+ G+ + S P +G+ + L ++ P Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSAPPQ 877 Score = 86.6 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G G+G +H RV A + + ++ + + E+Y + + Sbjct: 99 RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S + + L + Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRVPSESGFLVLLAVYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + +VY+ ++ S Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++D + + + ++A++P ++ + R I + Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKMEIEVMQLCSILEATSDG 464 + M + + + + ++ + M+L +++ +S+ Sbjct: 303 AGFVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I N A +FGY ++ + + T+ L + + Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSP--QPYAMPEVDHADAALAGNA 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T+ ++ + + + S DIS+ + ++ E Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479 Query: 581 ESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 36/376 (9%), Positives = 85/376 (22%), Gaps = 14/376 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149 G + + G A + I L + + P D N +T Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSPQPYAMPEVDHADAALAGNASAAQTMR 427 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G ++ + + PI SG F L+ H + Sbjct: 428 -HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--Q 480 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + S + K + + + + S + + L + + Sbjct: 481 VAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKAS 540 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E +Q + + + S + + + + Sbjct: 541 QFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 H + + LT+ K + + SD A + Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + L + + I + + + +E Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714 Query: 450 EVMQLCSILEATSDGI 465 L + + +D + Sbjct: 715 APFDLNQLFDNIADLM 730 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 28/283 (9%), Positives = 69/283 (24%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138 ID+ G++ + K +G A ++IG R L + + +L + L+ Sbjct: 509 IDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid protein [Agrobacterium radiobacter K84] Length = 1092 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 138/762 (18%), Positives = 261/762 (34%), Gaps = 54/762 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLW 150 +++ + IG R D+ + +D + L + + Sbjct: 34 DLRYVAVNQAYARFFRRDISDFIGNRSRDLFESGEEVDREDKERRSLVFGSEET--ALCF 91 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G + P R FGI + R + Sbjct: 92 DPAGHVRSRVQIESFSPSEDR------LYVFGIFLDAPAVPSVFSSETRDVGIQGESVDE 145 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + ++ ++ + L N+ + + D + KTE T + Sbjct: 146 TGLYRTILEDLPVASFVRDASHRLIYSNEAYAAITGLSRADVLGKTEHEMFETGADDYFA 205 Query: 271 EQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----------------HRN 307 E E ++ + Sbjct: 206 ENEQVLNEGRGLAFEGQVVDRQHVTHPIMTRINRVVTSDGKRYVVGSMNDISVLKLRETQ 265 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366 A + + PI ++ N+ Y N +F + + + E Sbjct: 266 LIEAQARAEALHQDLGSILRSMPIGVMIHDSDCNVEYTNDAFYDIWDFSKDERFEGRPVR 325 Query: 367 S----TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 +D I + R + + A + + S+ M Sbjct: 326 DLIVKHFELGRYGADAGDIDDIYQARMEASHNAGPNLQTEMSYADGKSVIMDSRRISNGR 385 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + ++ + +E + A S G+ I+ ++GII+ N A++ Sbjct: 386 TLVTYADISSVRQQEREISEAHLALERLGDLMTDATHAMSQGLLIL-QDGIIMLANDALT 444 Query: 483 KLFGYPVEDI-LRKPFTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 + P + + + K ++ + L ++ + E+ Sbjct: 445 DMLLVPADCLAVGKHWSAAFDHCAARGDFGADPEALRFAWRENMAADKPVSMIFRVVGER 504 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L + S +++ + D++E K+ + +L +E KS+FLA +SHEIR Sbjct: 505 WIQLEAAVS---ESRRWTVVLTDVTEMKKREAELQLLLARSEAADRAKSEFLANMSHEIR 561 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ ++G +E++ + R + + I +SGN +L I+ND+LD SKI++G+M L Sbjct: 562 TPMNGVLGMAELLAKTDL----DARQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMRL 617 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716 EAV + +L+ A EK I + +P +L D +QI N+L NAI Sbjct: 618 RKAAFDPAEAVEDVATLLSSPAAEKDIELLVRATPAVPAMVLGDAGRFRQIVTNLLGNAI 677 Query: 717 HFTPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G + + + N EV LRV DTG+G++ +L+ + F Q+ S R EG Sbjct: 678 KFTERGHVLVEVDSQPIDNGEVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASSTRRHEG 737 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 TGLGL + +VD G + S KG+ + P+ + Sbjct: 738 TGLGLAITAGLVDLFGGYLEVDSEWGKGSTFTVHLPMPPVAA 779 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 38/385 (9%), Positives = 97/385 (25%), Gaps = 28/385 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA L +E G ++G ++ + D +L + + Sbjct: 164 DASHRLIYSNEAYAAITGLSRADVLGKTEHEMFETGADDYFAENEQVLNEGRGLAFEGQV 223 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----------- 198 + + + + R G V R A + Sbjct: 224 VDRQHVTHPIMTRINRVVTSDGKRYVVGSMNDISVLKLRETQLIEAQARAEALHQDLGSI 283 Query: 199 -RLDKKFSHLHEIKKGHSSVEKEKYDI--FSQQSPPPHLRMKN------KVSSLTEYYAH 249 R +H+ YDI FS+ +++ ++ Sbjct: 284 LRSMPIGVMIHDSDCNVEYTNDAFYDIWDFSKDERFEGRPVRDLIVKHFELGRYGADAGD 343 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 DD+ + + + E ++ +++ G + Sbjct: 344 IDDIYQARMEASHNAGPNLQTEMSYADGKSVIMDSRRISNGRTLVTYADISSVRQQEREI 403 Query: 310 -SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + +L + + G + AN + + D + + S Sbjct: 404 SEAHLALERLGDLMTDATHAMSQGLLILQDGIIMLANDALTDML-LVPADCLAVGKHWSA 462 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 D + P L + R +AA + I + + E+ Sbjct: 463 AFDHCAARGDFGADPEALRFAWRENMAADKPVSMI------FRVVGERWIQLEAAVSESR 516 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ 453 + + + + + ++++ + + Sbjct: 517 RWTVVLTDVTEMKKREAELQLLLAR 541 >gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 972 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 118/645 (18%), Positives = 223/645 (34%), Gaps = 55/645 (8%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 +A R +K+F L K + + S + L + Sbjct: 204 EALQAELSRSEKRFRSLFHGNKAPFLLIEPFSGQIMDASAGAVGFYGYSLEELKGMNISQ 263 Query: 251 DDVLKTEKYPLLTSEESS---LPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSH 305 ++L E+ + + S N + T + ++ Sbjct: 264 INMLAPEELASVRTLALSGYKQQFIFPHKLKNGDVKTVEVISTPVESGEKELLFSIVQDV 323 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 E V+ ++ G N + T Y + + Sbjct: 324 TARQQALEDLGESRERLRAVVENAAAAIYLADKSGRFVEVNAAAERQTGYAREELL---- 379 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + ++ ++ ++ + H + + + Sbjct: 380 ---AMSIPDVDASSSMEGAAVVQAVMQSATGMTFESHHRRKDG-TIYPVEVRAVMLELHG 435 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSK 483 GI + + +RK+ L ++L+ + +++ +L NRA+ + Sbjct: 436 --VPHALGIVSDLTSRKEAERKLAEANRTLAAVLDGIPALVNVVDVSTREVLFMNRALKE 493 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-------------RQTLEKITL 530 G + + ++ + R L L Sbjct: 494 ALGRDGVGGVCHDVFRGKSCVCENCHLERMSVNTEGEAGVSVWEDRNPISGRWQLNHDRL 553 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + K + ++I + DI + KQ + L +K+ AE + KS FLA Sbjct: 554 LPWFDGKTVRVQISL--------------DIGQRKQAEEALRQSKEEAESANKAKSVFLA 599 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTPL I+G +++K N EY RS N + +++D+LD+S+I Sbjct: 600 NMSHEIRTPLNGILGMLQLLKTTD----PNDEQKEYLLGAIRSTNRLTRLLSDILDVSRI 655 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 E+G+M + + L + A K +L+ + +N+P R++ D ++QI Sbjct: 656 EAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNLPLRLIGDEVRLRQILF 715 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 N++ NAI FT G I I V++ V DTG+G++ L+ +PF Q Sbjct: 716 NLVGNAIKFTEKG-TIRIDACLLPRASDSSVRVLVTVGDTGIGISEEHLKDIFEPFVQAE 774 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S R +G GLGL + + +V G I STP +G+ + P Sbjct: 775 GSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLP 819 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 48/468 (10%), Positives = 113/468 (24%), Gaps = 39/468 (8%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + + S G ++ GM + ++ L + + L Sbjct: 236 GQIMDASAGAVGFYGYSLEELKGMNISQINM-LAPEELASVRTLALSGYKQQFIFPHKLK 294 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G +++ + P+ S +E F IV ++ + E Sbjct: 295 NGD--VKTVEVISTPVESGEKELL----FSIVQDVTARQQALEDLGESRERLRAVVENAA 348 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPE 271 + + + + L D E ++ + +S+ Sbjct: 349 AAIYLADKSGRFVEVNAAAERQTGYAREELLAMSIPDVDASSSMEGAAVVQAVMQSATGM 408 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVD 327 + H + + L + + + E +D Sbjct: 409 TFESHHRRKDGTIYPVEVRAVMLELHGVPHALGIVSDLTSRKEAERKLAEANRTLAAVLD 468 Query: 328 KCPIPFFVYS--HGNLFYANPSFLLLTKYKSV-----DDIEIAGGLSTLLDAPKLSDNNA 380 P V + + N + V D + ++S N Sbjct: 469 GIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHDVFRGKSCVCENCHLERMSVNTE 528 Query: 381 IKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + DR I+ +L + W ++ + + E + E + Sbjct: 529 GEAGVSVWEDRNPISGRWQLNHDRLLPWFDGKTVRVQISLDIGQRKQAEEALRQSKEEAE 588 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIA----IINRE--------GIILSTNRAVS--- 482 + + ++ + L G+ + G I STNR Sbjct: 589 SANKAKSVFLANMSHEIRTPLNGI-LGMLQLLKTTDPNDEQKEYLLGAIRSTNRLTRLLS 647 Query: 483 KLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + + + + L ++ + LE Sbjct: 648 DILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRW 695 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 24/252 (9%), Positives = 67/252 (26%), Gaps = 14/252 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G E++ + G +++ M + DV ++ + +++ Sbjct: 351 IYLADKSGRFVEVNAAAERQTGYAREELLAMSIPDVDASSSMEGAAVVQAVMQSATGMTF 410 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ +GT V + L ++ GIV + ++ + Sbjct: 411 ESHHRRKDGTIYPVEVRAVMLELHGVPHAL------GIVSDLTSRKEAERKLAEANRTLA 464 Query: 206 HLHEIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKD----DVLKTEKYP 260 + + +V + ++ V + + E+ Sbjct: 465 AVLDGIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHDVFRGKSCVCENCHLERMS 524 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + T E+ + ED + I+ + + +E Sbjct: 525 VNTEGEAGVSVWEDRNPISGRWQLNHDRLLPWFD---GKTVRVQISLDIGQRKQAEEALR 581 Query: 321 LTPETVDKCPIP 332 + E + Sbjct: 582 QSKEEAESANKA 593 >gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1666 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 126/679 (18%), Positives = 241/679 (35%), Gaps = 43/679 (6%) Query: 151 PIEGTNLYVPIDLAALPIYSRNREF----SGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 PIEG + + A LP+ + E R + + + Sbjct: 519 PIEGRDR--DVLDAVLPVLAMRMEILARSERTRQLLLATQRQAGELTAQQERIQALLSEQ 576 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + +P + V S+ A + Sbjct: 577 DAIFDNAPMGIMYTASGRIQRANPAMAELLGYTVESMKGLEASRLFATADSYREFGGLVA 636 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR---------NHPSLSAYFDE 317 L E H Q F + + E L L E Sbjct: 637 PKLGAGEGIHQEWDLIRGDGQLFSAMISAKGVRLEGLERASIWIVEDITERKRLEREMRE 696 Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 ++ P + G+ ++N + +++ D Sbjct: 697 SGERLRRILENSPAGVSINTEDGHSLFSNQRMAEMLATTP-EELSHRSATEFWFD----- 750 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + R D +R ++ + + + + + Sbjct: 751 PTDRQEFIATLRRDGYVRDYQSRF--VRADGTPITVLLASALTEFADGRYLVSWA---YD 805 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + + + +I EA + GIA + + +I+ N + +LFGY +++ + Sbjct: 806 ITERQKAEDAVRFAGAEQQAIFEAATVGIAFL-KNRVIVRGNPQLDRLFGYEPGELVGQS 864 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSC 553 ++ +L + ++ K+ RI I S Sbjct: 865 TRIWFP--DDESFADVGDAYEALSRGEVHQREQCYVRKDGTRFWCRISGSAIDPSDLSRG 922 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + D+++ + L+ A+ +AE + KSDFLA +SHEIRTP+ AIIG S + Sbjct: 923 AVWMLEDVTDARAAAEALAKARDVAEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKT 982 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 NPR +Y I +SG +L I+ND+LD SKIE+GK+ + V LD+ + + Sbjct: 983 EL----NPRQRDYVKKIQQSGQHLLGIINDILDFSKIEAGKLEVEVTEVHLDKVLENVGN 1038 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L+ A+ K + + +P ++ D + Q+ +N +NA+ FT G +I+++ Sbjct: 1039 LISDKASAKGLELLFDLGAGVPLDLMGDSLRLGQVLINYANNAVKFTEEG-EIVVAVRLL 1097 Query: 733 SN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + VRDTG+G+T + + + F Q S + GTGLGL ++K + + Sbjct: 1098 EDLGAEVMLRFEVRDTGIGLTEEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELM 1157 Query: 789 MGKFYIFSTPAKGTLIEII 807 G+ + S P +G+ Sbjct: 1158 GGEVGVDSVPGEGSTFWFT 1176 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 40/408 (9%), Positives = 94/408 (23%), Gaps = 25/408 (6%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 SE +FD P + +T A G ++ + + + +G M G+ + Sbjct: 574 SEQDAIFDNAPMGIMYT----ASGRIQRANPAMAELLGYTVESMKGLEASRLFATADSYR 629 Query: 130 N--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + L + + L +G I + + R IV Sbjct: 630 EFGGLVAPKLGAGEGIHQEWDLIRGDGQLFSAMISAKGVRLEGLERA-----SIWIVEDI 684 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTE 245 + ++ + E S+ E ++S + Sbjct: 685 TERKRLEREMRESGERLRRILENSPAGVSINTEDGHSLFSNQRMAEMLATTPEELSHRSA 744 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YL 303 D + E L + Q F + T + Sbjct: 745 TEFWFDPTDRQEFIATLRRDGYVRDYQSRFVRADGTPITVLLASALTEFADGRYLVSWAY 804 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + + + + NP L Y+ + + + Sbjct: 805 DITERQKAEDAVRFAGAEQQAIFEAATVGIAFLKNRVIVRGNPQLDRLFGYEPGELVGQS 864 Query: 364 GGLSTLLDAPKLSDNNAIKPVML----------YRSDRTCIAASARLHTIQWNRENSLAM 413 + D +A + + R D T I + + A+ Sbjct: 865 TRIWFPDDESFADVGDAYEALSRGEVHQREQCYVRKDGTRFWCRISGSAIDPSDLSRGAV 924 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + + + + ++ + + A Sbjct: 925 WMLEDVTDARAAAEALAKARDVAEDAAKTKSDFLANMSHEIRTPMNAI 972 >gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 571 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 362 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 419 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 478 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565 >gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1] Length = 567 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 196 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 255 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 256 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 312 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 313 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 358 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 359 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 415 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 416 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 474 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 475 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 533 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 534 KHLVEAHHGTITVDSEVGEGTTFTVVLP 561 >gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201] gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 567 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 196 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 255 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 256 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 312 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 313 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 358 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 359 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 415 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 416 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 474 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 475 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 533 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 534 KHLVEAHHGTITVDSEVGEGTTFTVVLP 561 >gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99] Length = 587 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus thuringiensis str. Al Hakam] Length = 587 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 587 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne] Length = 587 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis str. A2012] gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CNEVA-9066] gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055] gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western North America USA6153] gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger B] gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum] gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Australia 94] gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI] gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames] gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames Ancestor'] gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488] gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193] gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442] gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389] gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465] gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174] gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis Tsiankovskii-I] gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W] gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820] gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684] gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248] gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis str. CI] Length = 587 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 680 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 132/671 (19%), Positives = 250/671 (37%), Gaps = 24/671 (3%) Query: 159 VPIDLAALPIYSRNREF-SGFRGFG---IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + A +R+R G R I+ G L + Sbjct: 13 FWLVAYADLERTRDRAIQDGLRQTANLSILLEEDARRAMVVAGYTLRAVAAEGTIPAYLL 72 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + L + + + + + + S Sbjct: 73 GETAGVPGAAAGPGAAMRSLLIVERDGRVRQSAGLDEVARIADGPLAEAVHGESAAFIGP 132 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + + L N S + + L A + G L+ + Sbjct: 133 YRQADGG--WRAAVVRPLTNGSAMAVAVIDLDRFTRLYATQNIGP-LSIILFYREDGTVL 189 Query: 335 VYSHGN--LFYANPSFLL--LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 +S G+ N +F L + + + G + + R Sbjct: 190 AHSRGSMPFLDENRAFFASVLPRLPAGEVTRTLSGFD--------PTEGRERIGTVRRVA 241 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEI 449 + R+ T E A + + + + Sbjct: 242 GWPLYVYVRIRTDDVLAGWYNDRLKRILETAAVSVVVTLLALLALRQLGRLETTTQALRA 301 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + ++ +++ + +++ +G +L NR L G P + ++ + Sbjct: 302 SERRSQALFDSSFQVMGLLSPDGQVLGLNRPACALAGLPADALVGNRAWEIRGWARTDEL 361 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWK 565 + + + + + IK + + DI+E Sbjct: 362 ATAFRHSIEKAASGRFVRYETDVVTDGATRVMDVTIKPVFDEKGTVTVLVVEARDITERV 421 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L+ A AE + KS FLA +SHE+RTPL AIIGFS+++ ++ FGPLG+PRY + Sbjct: 422 EAAERLAAALDQAEAANRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRD 481 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y ++ SG +LD++ND+LD+SK+E+G+ L + +A+ +L + A+ + Sbjct: 482 YVRHVQNSGRHLLDLINDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVT 541 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +P++LAD R+++Q+ LN+LSNA+ FTP GG++ +S + + + VRDTG Sbjct: 542 LEVDCPPCLPKLLADERALRQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTG 601 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L + ++PF Q +S R GTGLGL + + ++ + G + S P GT Sbjct: 602 IGIPADALARILEPFQQADSSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAAT 661 Query: 806 IIFPLYDTSHP 816 I FP+ + P Sbjct: 662 IRFPVCRVAPP 672 Score = 42.3 bits (98), Expect = 0.33, Method: Composition-based stats. Identities = 24/269 (8%), Positives = 60/269 (22%), Gaps = 21/269 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 + G + ++ G A ++G R ++ D +++ + Sbjct: 320 LSPDGQVLGLNRPACALAGLPADALVGNRAWEIRGWARTDELATAFRHSIEKAASGRFVR 379 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +D+ P++ + + + Sbjct: 380 YETDVVTDGATRVMDVTIKPVFDEKGTVT--VLVVEARDITERVEAAERLAAALDQAEAA 437 Query: 208 HEIKKGHSSVEKEKYDIFSQQ-------------SPPPHLRMKNKVSSLTEYYAHKDDVL 254 + K + + P R ++ V + H D L Sbjct: 438 NRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQNSGRHLLD-L 496 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + E E + T + + + E P L Sbjct: 497 INDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCP---PCLPKL 553 Query: 315 FDEGENLTPETVDKCPIPF-FVYSHGNLF 342 + L ++ F G + Sbjct: 554 LADERALRQVLLNLLSNAVKFTPRGGRVT 582 >gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter sp. K31] Length = 844 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 163/751 (21%), Positives = 287/751 (38%), Gaps = 65/751 (8%) Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159 E + G A + + DV + DP + T G++ W GT + Sbjct: 111 ETALRAAGGEAMAVAVLGPADVLAVAGRDPAADWKAAARAAGT-SGRSL-WIGGGTTGRL 168 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 + + A PI G RGF I A G ++ + + Sbjct: 169 YVVM-ATPI-------EGGRGFVIASSDPSRLVAEPAKGAASALMLANGKILAAAGRPI- 219 Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 E + + + ++L L PL + + + Sbjct: 220 -EGATTLREAFSLSIEDLGDGPAALRGQSV-DGRALDVAAQPLAQGDLLAAAAAQPRTVA 277 Query: 279 NLNQYTKKQYFGTLQ----NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 N+++ + L + L R F + E V+ + Sbjct: 278 NVDRQIMEGAVSLLAPLAVGIALALMLMLQSRRVEMAQREFVDSEQRFRLAVEAARCGIW 337 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + G A+ F+ L D+ L + T Sbjct: 338 EWELG----ADQVFMSDVTGAMFGWGGGGVVAGQELLDRVSVDHRDKVRQALANAA-TYG 392 Query: 395 AASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 A + ++ + G+ + + R+ + + + + Sbjct: 393 AFDVSFRVPSRDGGRAIWIDARGQGFGKPGEDGYSRIIGVALDVTEERLAQARAQAAENR 452 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +E+ S+ + +R+G +L NR +F + + KP E N + + Sbjct: 453 LRDAIESVSEAFVLWDRQGRLLMCNRNYRNVFNLEPKLL--KPGAPRNEVNRFAALAIKH 510 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + E + + + + ++ +T DI+ K ++ Sbjct: 511 DQPAPDGAKGVREAEL----NDGRWIQIS---ERRTAEGGLVMTAADITAIKNQEEARRL 563 Query: 574 AKKIAEKE----------------------------SSHKSDFLARVSHEIRTPLTAIIG 605 ++ + + KS+FLA +SHE+RTPL AI G Sbjct: 564 NEEQLQHAVAGLERSQEQLAELARKYEMEKVKAEGANKAKSEFLANMSHELRTPLNAING 623 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE++ N+ FGPLG+ RY Y+ I SG +L ++ND+LD+SKIE+GKMNL FEP+SL+ Sbjct: 624 FSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNLKFEPLSLE 683 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +A+ LV+ A + + F +P + AD R+VKQ+ LN+LSNAI FTP G+I Sbjct: 684 DVTEDAVRLVRNRAEAAGLKLEIDFPP-LPEVEADYRAVKQVLLNLLSNAIKFTPRAGRI 742 Query: 726 IISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ + E V + V DTG+G+ +L + +PF Q+ + +GTGLGL L K Sbjct: 743 VVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGTGLGLALTK 802 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 ++V+ + G + STP +GT + I P+ + Sbjct: 803 SLVEMHDGALEMTSTPGEGTTVSFILPISQS 833 Score = 39.2 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 41/423 (9%), Positives = 94/423 (22%), Gaps = 18/423 (4%) Query: 178 FRGFGIVHVNRVDNDPR--ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 + FGI + + N P A K + E Q+ P + Sbjct: 49 YTAFGISRLKQEANVPPGGASLAAEAKLVAAAAETNLAAQRAGLSAAADLLQRDPSAPID 108 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 A VL + + + + + + G Sbjct: 109 AAETALRAAGGEAMAVAVLGPADVLAVAGRDPAADWKAAARAAGTSGRSL-WIGGGTTGR 167 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 + A D + +G + A + + Sbjct: 168 LYVVMATPIEGGRGFVIASSDPSRLVAEPAKGAASALMLA--NGKILAA--AGRPIEGAT 223 Query: 356 SVDD-----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 ++ + IE G L + AA+A+ T+ Sbjct: 224 TLREAFSLSIEDLGDGPAALRGQSVDGRALDVAAQPLAQGDLLAAAAAQPRTVANVDRQI 283 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + ++ V+ + +R+ + +EA GI Sbjct: 284 MEGAVSLLAPLAVGIALALMLMLQSRRVE--MAQREFVDSEQRFRLAVEAARCGIWEWEL 341 Query: 471 EGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + + +F + + + + + L + ++ Sbjct: 342 GADQVFMSDVTGAMFGWGGGGVVAGQELLDRVSVDHRDKVRQALANAATYGAFDVSFRVP 401 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + R P Y D++E + + + A+ S Sbjct: 402 SRDGGRAIWIDARGQGFGKPGEDGYSRIIGVALDVTEERLAQARAQAAENRLRDAIESVS 461 Query: 587 DFL 589 + Sbjct: 462 EAF 464 >gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 467 Score = 365 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 176/372 (47%), Gaps = 24/372 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E ++ +IL + SDG+ ++ G ++ N V +LF + K + Sbjct: 116 AEKNRIKAILSSMSDGVIAMDAWGRMILINPVVEELFRITMAASRGKNILRVIRNYD--- 172 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566 + L + L + ++K E ++ + +I + + + DI+E K Sbjct: 173 LEKLLNQALETG--RCMQKQIQILAPEPRVFQVHVIPLQNSGAERGGVVALLRDITERKI 230 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +S+F+A VSHE+RTPLT+I GF+E + + R + Sbjct: 231 LQE--------------MRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDTAR--RF 274 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ + ++++LL++S++ES K +PV++ E + A++++Q A EK + I Sbjct: 275 LEIINSETERLSRLIDELLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLAI 334 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + ++P + D + Q+ LN++ NA+ +T +GG++ IS T +E + V+D G+ Sbjct: 335 KINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQAGGEVSISAAATQDEM-KVDVKDNGI 393 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L + + F ++ ++ GTGLGL + K ++DA+ G + S G+ Sbjct: 394 GIPPESLSRVFERFYRVDKARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSF 453 Query: 807 IFPLYDTSHPHD 818 + PL + D Sbjct: 454 VIPLEHQAASED 465 Score = 37.7 bits (86), Expect = 8.6, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 8/166 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + I+ + + G + V ++ + L+ + Sbjct: 135 MDAWGRMILINPVVEELFRITMAASRGKNILRVIRNYDLEK--LLNQALETGRCMQKQIQ 192 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + E V + +P+ + E G ++ + + SH Sbjct: 193 ILAPEPRVFQVHV----IPLQNSGAERGGV--VALLRDITERKILQEMRSEFVANVSHEL 246 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 E + + P R ++S TE + D L Sbjct: 247 RTPLTSIRGFAETLLDGALEEPDTARRFLEIINSETERLSRLIDEL 292 >gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1245 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 123/573 (21%), Positives = 213/573 (37%), Gaps = 41/573 (7%) Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAY 314 + P E ++ + F ++ +QY L ++ + ++ R + Sbjct: 405 SQEPRKPPERMTIGWEPWFQLVSRIFEENQQYTRHLAEQNRRLDKLVARRTERLKETTER 464 Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + L +D P F G N S + Y + I T Sbjct: 465 REREYALLRSLLDSIPEAIVFKDKEGKYLGCNKSAERMLGYTESEMIGQESIKLT----- 519 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN--RENSLAMTFIPFEKANQFPENMPQN 431 + + V + D ++ L + + + + N+ E + Sbjct: 520 -----SEEQSVRIKAEDGRVLSERTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELLGLI 574 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPV 489 + + + ++ + + ++A DG+ ++ E II N A + GY Sbjct: 575 AVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPAYYSMLGYKT 632 Query: 490 ED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----- 542 + L + + + Y E LS + + K + L Sbjct: 633 NEFPALVSTIDALIHPDDRIRVEEYRDEYLSDPI-GAFDIEFRMKGKSGEYHWLLSRGRV 691 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + T DI+ K + + AK+ AE + +KS+FLA +SHEIRTP+ A Sbjct: 692 VEFTTDNQPKRMVGTHKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMSHEIRTPMNA 751 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG ++ + P + +Y + S +L I+ND+LD SKIE+GK+ L Sbjct: 752 IIGMLQLAQRTSLTP----QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVSF 807 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721 LD+ + A+ L L A EK + + IL D + Q+ +N+LSNA+ FT S Sbjct: 808 PLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQS 867 Query: 722 GGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G I E + VRDTG+G++ + E F Q S + GTG Sbjct: 868 G---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTG 924 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LGL ++K +V G + S G+ Sbjct: 925 LGLSISKHLVSMMGGTMQVQSEMGVGSTFSFTI 957 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 14/223 (6%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLL 137 + D G ++ + +G +MIG + S+ + G +L Sbjct: 477 DSIPEAIVFK-DKEGKYLGCNKSAERMLGYTESEMIGQESIKLTSEEQSVRIKAEDGRVL 535 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 + + +E V +D LP Y+R E G + R L Sbjct: 536 SERTPLRYQE---KVELAGKPVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 590 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDD 252 ++ + ++ G + I + L K + S + H DD Sbjct: 591 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPALVSTIDALIHPDD 650 Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 ++ E+Y L+ + + + + ++ Sbjct: 651 RIRVEEYRDEYLSDPIGAFDIEFRMKGKSGEYHWLLSRGRVVE 693 >gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2] Length = 1107 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 108/637 (16%), Positives = 235/637 (36%), Gaps = 30/637 (4%) Query: 194 RALGKRLDKKF--SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 LD + L + + S + ++ + + + YA ++ Sbjct: 19 EEGELWLDDILNKTSLLDNHDASRLTTGLSALLASIDNTYRQHGLEAEGKTTSGGYARQN 78 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 ++ + TS + ++ T + + + + + + Sbjct: 79 NMDRPPVAQGQTSPQELAAITDNLVQSVNTLLTAQARPEIDDDIASLTSLSTLVLDLITE 138 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + + +D+ I + +G + AN L+++ + I + + + Sbjct: 139 QQHKENDMLIQRRAMDEHSIVVTLDLNGTILSANDKCCQLSEFTRGELIGNNADMLNVKN 198 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P + ++ + L ++ + + N+ Sbjct: 199 VPLPTRLAILQSLF----KGEIWHGE--LQSVTKSGTPWF-VFCTIVPNVNEQGRVENLV 251 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + + ++++E SI + +G+ ++ +G N S+L G+ + D Sbjct: 252 VLCTDISNQKRLEKRLETGRQFYQSITNSIGEGVYAVDAKGKTQFLNPEASRLLGWELAD 311 Query: 492 ILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + F + + + + ++ K ++ + I+ Sbjct: 312 LQSHRFHNAVHYQKEDGTLLSRDECPVNHAICKGKTYSSDEDFFT-DKRGRIFPISIVAV 370 Query: 547 KLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 L + + DIS K + +L HA K A + K DFLA +SHEIRTP+ A Sbjct: 371 PLEDIHGEPNGHVGVFRDISGRKGLERQLQHAYKEAANANKAKGDFLATMSHEIRTPMNA 430 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG + + + Y + S +L ++N +LD SK+E+ ++ LH Sbjct: 431 IIGLTHLALETDNYT----QQQSYMTKVKGSATSLLTLINGILDFSKVEAQQIELHHADF 486 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTP 720 +L + +++ + Q A +K + + ++ D + Q+ +N+L NAI FT Sbjct: 487 NLADMMNKLAQVFQHKARQKHLQLLFDMRLDTDV-TCNGDSDKIYQVLVNLLGNAIKFTR 545 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G + ++ + + + V DTG+G+ EK F Q S GTGLGL + Sbjct: 546 HGF-VKLTVSKEKDA-LSFCVSDTGIGIDADNKEKLFNAFVQADASISREYGGTGLGLAI 603 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSH 815 +K +V+ G+ S KGT P +++T++ Sbjct: 604 SKRLVELMHGELEFTSELGKGTQFCFAVPELVHETAN 640 Score = 45.8 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 19/245 (7%), Positives = 61/245 (24%), Gaps = 15/245 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147 +D +G + +++ + ++IG ++ P I L + W+G+ Sbjct: 162 LDLNGTILSANDKCCQLSEFTRGELIGNNADMLNVKNVPLPTRLAILQSLFKGEIWHGEL 221 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 GT +V + +P + + + + + + Sbjct: 222 QSVTKSGTPWFVFCTI--VPNVNEQGRVENL--VVLCTDISNQKRLEKRLETGRQFYQSI 277 Query: 208 ----------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + K + E + + + + + Sbjct: 278 TNSIGEGVYAVDAKGKTQFLNPEASRLLGWELADLQSHRFHNAVHYQKEDGTLLSRDECP 337 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + ++ +++ F + L++ E ++ S + Sbjct: 338 VNHAICKGKTYSSDEDFFTDKRGRIFPISIVAVPLEDIHGEPNGHVGVFRDISGRKGLER 397 Query: 318 GENLT 322 Sbjct: 398 QLQHA 402 Score = 44.6 bits (104), Expect = 0.072, Method: Composition-based stats. Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 11/150 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKR 139 + +DA G + ++ E + +G + R + D + + + Sbjct: 285 VYAVDAKGKTQFLNPEASRLLGWELADLQSHRFHNAVHYQKEDGTLLSRDECPVNHAICK 344 Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 T+ + G PI + A+P+ + E +G G+ + Sbjct: 345 GKTYSSDEDFFTDKRGRIF--PISIVAVPLEDIHGEPNGH--VGVFRDISGRKGLERQLQ 400 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 K+ ++ ++ K + + Sbjct: 401 HAYKEAANANKAKGDFLATMSHEIRTPMNA 430 >gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 792 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 145/739 (19%), Positives = 268/739 (36%), Gaps = 58/739 (7%) Query: 103 PKTIGNYAFKMIGMRLC--DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160 + IG DV D ++ +T + Sbjct: 67 AELAAARLDAAIGRAQLGLDVVAGRLAGAPERSLDAVEAGRAVAPETAFLVTAADGTRLA 126 Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 AA + + GI+ V L + L G Sbjct: 127 SKGAAAEDFVVDNR-------GILRQRAVGGQIVIARTALPASDNVLVVGPDGRVLGMTT 179 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 P + + ++ + L+ +L Sbjct: 180 TLKARLGVEPRALVGTETPLAGRIADKRVTAAGAAVGETGLVAVAWRPQSTGAAALISDL 239 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340 G L + S + E E+ V+ + + Sbjct: 240 WLIMAPIGLGVLVLGLALMQGW----RQSRASRVWAESEHRFRVAVEAARCGVWEWDLDR 295 Query: 341 -LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + L + + A + + + +A++ + + A Sbjct: 296 ETVDVSDYMAALLGLPTGGSVTSAAVIERIHPRYRDLVEHALRQAATFGAFEVTFAVPLE 355 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 +W A G+ + + R + +++ +L +E Sbjct: 356 GGGARWIDARGQA------RGRRGDDGYGMILGVAMDITEARRARAQLQAAEGRLRDGIE 409 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 + SD + ++ G ++ N+A FG+ E + + E N + + Sbjct: 410 SVSDAFVLFDKHGRLILWNQAFKDAFGFADEAV--RKGAQKDELNRIAALAIKADRPSPE 467 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574 E + ++L L ++ +T D++ ++++ + + Sbjct: 468 GRAGAREVELY----DGRVLQL---AERFTGDGGTVITAADVTAIRRQEVERQRSADSLR 520 Query: 575 -----------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 AE + KS+FLA +SHE+RTPL AI GFSE++ Sbjct: 521 KTVDELEASQEKLSLLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMA 580 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + FGPLG+ +Y YA+ I +SG +L ++ND+LD++KIE+GKM LH+E VSL E +A Sbjct: 581 GEMFGPLGHEKYKGYAHDILKSGQHLLSLINDILDMAKIEAGKMTLHYEAVSLTELCEDA 640 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 I L++ A + + + A ++P I AD R +KQ+ LN++SNA+ FTP GG+I +S T Sbjct: 641 IRLMRGKAQDCGLTLSLE-AGDVPEIEADYRGLKQVMLNLISNAVKFTPEGGEITVSVTR 699 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + V DTG+G+ +L + +PF Q+ +GTGLGL L K++++ + G+ Sbjct: 700 QNAVTMRIAVTDTGIGIAAADLARLAQPFEQVEGQHSKTTQGTGLGLALTKSLIELHGGE 759 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P +GT + P+ Sbjct: 760 MTMVSEPGEGTTVSFDIPI 778 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 28/379 (7%), Positives = 83/379 (21%), Gaps = 29/379 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + G + ++ L +G ++G + + + + Sbjct: 168 VGPDGRVLGMTTTLKARLGVEPRALVGTE----TPLAGRIADKRVTAAGAAVGETGLVAV 223 Query: 149 LWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 W + T + + +A + + + +G+ +RV + + + Sbjct: 224 AWRPQSTGAAALISDLWLIMAPIGLGVLVLGLALMQGWRQSRASRVWAESEHRFRVAVEA 283 Query: 204 FSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + V + P V + Sbjct: 284 ARCGVWEWDLDRETVDVSDYMAALLGL--PTGGSVTSAAVIERIHPRYRDLVEHALRQAA 341 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-ESFEYLSHRNHPSLSAYFDEGE 319 + E + + + + + A E Sbjct: 342 TFGAFEVTFAVPLEGGGARWIDARGQARGRRGDDGYGMILGVAMDITEARRARAQLQAAE 401 Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + ++ F ++ G L N +F + + Sbjct: 402 GRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAFGFADEA------------VRKGAQKD 449 Query: 379 NAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L A ++ L + I ++ Sbjct: 450 ELNRIAALAIKADRPSPEGRAGAREVELYDGRVLQLAERFTGDGGTVITAADVTAIRRQE 509 Query: 438 VDTRINKRKMEIEVMQLCS 456 V+ + + + V +L + Sbjct: 510 VERQRSADSLRKTVDELEA 528 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 26/265 (9%), Positives = 64/265 (24%), Gaps = 7/265 (2%) Query: 70 SENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +E+ F R W D ++S+ + +G + V + +H Sbjct: 271 AESEHRFRVAVEAARCGVWEWDLDRETVDVSDYMAALLGLPTGGSV--TSAAVIERIHPR 328 Query: 129 PNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + + L++ T+ T P+EG ID R + G G+ Sbjct: 329 YRDLVEHALRQAATFGAFEVTFAVPLEGGGAR-WIDARGQARGRRGDDGYGMI-LGVAMD 386 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 RA + + + E + + + + Sbjct: 387 ITEARRARAQLQAAEGRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAFGFADEAVRKGA 446 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + + + + + F + + + R Sbjct: 447 QKDELNRIAALAIKADRPSPEGRAGAREVELYDGRVLQLAERFTGDGGTVITAADVTAIR 506 Query: 307 NHPSLSAYFDEGENLTPETVDKCPI 331 + T + ++ Sbjct: 507 RQEVERQRSADSLRKTVDELEASQE 531 >gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 1314 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 92/429 (21%), Positives = 166/429 (38%), Gaps = 15/429 (3%) Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG--IEPEDVDTRINKRKMEI 449 I + + + S + P + Q + + E + Sbjct: 402 ELIDLLVNMDRQRQRGDFSQPVHVEPHTEVGQIAAEYNRVIDCVNQEIIAREQAIAAART 461 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + SI E +GI G LS N +++++G+ ++ Q Sbjct: 462 AEEKFRSIFENAVEGIFQTTPSGEYLSANPKLARIYGFETVADMQTGLQDISRQLYVDPA 521 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565 L + + + ++ + + + T+ +I++ K Sbjct: 522 RRAEFCSLLEQTDVVIGFESQVYRADGSIIWISENARAIRDEQGQVKYYEGTVEEITQRK 581 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 L K+ A S KS FLA +SHEIRTPL +IG E++ + R Sbjct: 582 -LNADLKAEKEAAVAASQAKSAFLANMSHEIRTPLNGVIGMLELLGTTTL----DERQNR 636 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + S +L ++ND+LD SKIE+GK+ L L + + + ANEK + Sbjct: 637 YVHIARSSAGTLLGLINDVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLE 696 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---ILRV 741 + +P + D ++Q+ +N+++NAI FT G I+ + + V + V Sbjct: 697 LSCRILPGVPTNVYGDPERIRQVLINLVNNAIKFTKQGEVILRAEQQVHSSGVSRMRISV 756 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ + PF Q+ S + GTGLGL + + +++ G+ + S G Sbjct: 757 IDTGIGIPADRSSQLFAPFTQVDASTTRKYGGTGLGLAICRQLIELMGGRVGVDSVEGNG 816 Query: 802 TLIEIIFPL 810 + PL Sbjct: 817 STFWCEVPL 825 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 76/263 (28%), Gaps = 24/263 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143 + G + +L + G + L D+S L++DP LL++ + Sbjct: 477 IFQTTPSGEYLSANPKLARIYGFETVADMQTGLQDISRQLYVDPARRAEFCSLLEQTDVV 536 Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G ++ ++ +G+ + I A I + + G ++L+ Sbjct: 537 IGFESQVYRADGSI--IWISENARAIRDEQGQVKYYEG----------TVEEITQRKLNA 584 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 E S + S + P + + L + Sbjct: 585 DLKAEKEAAVAASQAKSAFLANMSHEIRTPLNGVIGMLELLGTTTLDERQNRYVHIARSS 644 Query: 263 TSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + DF I + ++ L + ++ E SHR ++G L Sbjct: 645 AGTLLGLINDVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHR-------ANEKGLEL 697 Query: 322 TPETVDKCPIPFFVYSHGNLFYA 344 + + P + + Sbjct: 698 SCRILPGVPTNVY-GDPERIRQV 719 >gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 968 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 111/528 (21%), Positives = 213/528 (40%), Gaps = 38/528 (7%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANP 346 S +S + + E ++ + P P ++ L N Sbjct: 465 GESFQSMSEDLALSFARIKTALKESQDKFAKIFHSSPDPILIHQIITKILQGCVLLDVNA 524 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 SFL T Y V+ I + +L+ P+ + ++ + + + + Sbjct: 525 SFLNFTGYSEVELIGYSFDNLSLVSNPE------QELLLKEQLKNQGYVRNLEFDWLTKS 578 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 E ++ + I + D + + + + + E G+A Sbjct: 579 GEVKTSLVSCESIVIDNKN---SVISIIKDITDRKKAEENLRQSEERFRTAFENAGSGMA 635 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +++ G + NRA+ ++ GY D+L K T + + LS + Sbjct: 636 LVSLNGYFIRVNRALCQMLGYDSRDLLTKNVTELITGEELPKDFDLAYQFLS-GQITNYQ 694 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 K K++ + + + L + + + DISE + + Sbjct: 695 VEKSCLHKSGKIIWVLLNVSLLCDVNGNPLHFIWQIQDISERHEVE-------------- 740 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K++F++ VSHE+RTPLTAI G E++ + + +L +VN Sbjct: 741 QLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQE-AEQMLKIAVSNSERLLRLVN 799 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADL 701 ++L++ ++SGKM L+ E ++ V +A+ VQ A + I I S +ILAD Sbjct: 800 NILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDVPNTKILADE 859 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++ Q+ N+LSN++ F+ +G ++ I T ++E+I+ V+D G G+ ++LE + F Sbjct: 860 ETIIQVLTNLLSNSVKFSHAGTKVEIYVTM-GDKEIIVAVKDYGKGVPPHKLETIFERFE 918 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ S + GTGLGL + K +V + GK ++ S G+ P Sbjct: 919 QVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLP 966 Score = 45.8 bits (107), Expect = 0.027, Method: Composition-based stats. Identities = 8/108 (7%), Positives = 32/108 (29%), Gaps = 2/108 (1%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + +GY ++ L + +G + ++ + ++ + + + + Sbjct: 637 VSLNGYFIRVNRALCQMLGYDSRDLLTKNVTELITGEELPKDFDLAYQFLSGQITNYQVE 696 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + + + + L + N F + ++ L Sbjct: 697 KSCLHKSGKIIWVLLNVSLLCDVNGNPLHFIW--QIQDISERHEVEQL 742 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 14/136 (10%), Positives = 39/136 (28%), Gaps = 5/136 (3%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 L +++ G ++IG ++S + + + + + LK Q W + Sbjct: 519 LLDVNASFLNFTGYSEVELIGYSFDNLSLVSNPEQELLLKEQLKNQGYVRNLEFDWLTK- 577 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + ++ I N+ I+ ++ +++F E Sbjct: 578 SGEVKTSLVSCESIVIDNKNSV----ISIIKDITDRKKAEENLRQSEERFRTAFENAGSG 633 Query: 215 SSVEKEKYDIFSQQSP 230 ++ Sbjct: 634 MALVSLNGYFIRVNRA 649 >gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108] gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102] Length = 587 Score = 365 bits (937), Expect = 2e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSVGT 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ A EK I ++ + + ++ D ++QI +N+++NAI +TP+ Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581 >gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1377 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 109/644 (16%), Positives = 224/644 (34%), Gaps = 31/644 (4%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 +++ L E + +Y S ++ + + Sbjct: 344 ERQREARRLSESREQYQVLAEYSPDWEYWLGPDGRYRYVSPACRELSGHTADEFLADPDL 403 Query: 247 YA---HKDDVLKTEKY---PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 A H +D ++ L + + Q + ++ + + Sbjct: 404 IARLVHPEDRAHWMRHYTDALESCQADRDAIQMRLRARDGREHWVEHICNPVITADGRYL 463 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + + V++ P + G + Y N +F+ T Y + Sbjct: 464 GRRGVFRDITERKRIESELTKRSLAVEQSPESIVITDLDGRIEYVNDAFIANTGYTRAEA 523 Query: 360 IEIAGGL-------STLLDAPK---LSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRE 408 + + + D L ++ R + A + I+ + Sbjct: 524 LGQNPRILKSGRTPKAIFDELWACLLRGEVWHGELVNRRKNGELYTEVASISPIRQSDGR 583 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + + + ++ ++ L ++++ + Sbjct: 584 ITHYLAIKSNVTEQKRLAEELEQYRHHLEELVEARTLELRQQMRSLKALIDNLPHMAWMK 643 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 +REG ++ NRA +++ G ++I+ E+++ ++T ++ Sbjct: 644 DREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLWPGELAERYRADDAEVMAGRCQRT--RV 701 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 T + DI ++ + +L+H ++AE KS Sbjct: 702 MPSVTNPGAIYETFKAPIIDDTDEVLGTVGFARDIRPQREMEAELAHRAELAESAVRAKS 761 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHEIRTP+ AI+G + +++ P R + I+ + +L ++ND+LD Sbjct: 762 AFLANMSHEIRTPMNAILGLAHLLRRDLIDPANINR----LDKIESAARHLLAVINDILD 817 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +SKIE+GK+ L E S V + SL+ A K + ++ +P + D+ ++Q Sbjct: 818 LSKIEAGKLQLSDENFSAVMLVDQVSSLILDEARAKGLSLKVDLDPELPWMRGDVTRLRQ 877 Query: 707 IALNILSNAIHFTPSG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQI 763 LN SNA+ FT +G I + E V V DTG+G+ + + + F Q Sbjct: 878 ALLNYASNAVKFTHTGFVTIRVRLQERDAEGLTVRFEVEDTGIGIPPDKQARLFQAFEQA 937 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 S R GTGLGL + + G+ S +G+ Sbjct: 938 DTSTTRRYGGTGLGLAITAQLARMMGGEAGADSVAGRGSTFWFT 981 Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 37/400 (9%), Positives = 93/400 (23%), Gaps = 41/400 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 + G + +S + G+ A + + + + H D L+ Sbjct: 373 LGPDGRYRYVSPACRELSGHTADEFLADPDLIARLVHPEDRAHWMRHYTDALESCQADRD 432 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG--KRLDKK 203 + ++ P+ + + + G RG + + + L + Sbjct: 433 AIQMRLRARDGREHWVEHICNPVITADGRYLGRRG--VFRDITERKRIESELTKRSLAVE 490 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 S + + D F + + + + + LL Sbjct: 491 QSPESIVITDLDGRIEYVNDAFIANTGYTRAEALGQNPRILKSGRTPKAIFDELWACLLR 550 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---------------- 307 E + N YT+ ++ + YL+ ++ Sbjct: 551 GEV--WHGELVNRRKNGELYTEVASISPIRQSDGRITHYLAIKSNVTEQKRLAEELEQYR 608 Query: 308 ------HPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 + + + +D P + + G N +F + + I Sbjct: 609 HHLEELVEARTLELRQQMRSLKALIDNLPHMAWMKDREGRFVAVNRAFAEIKGRSPDEII 668 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + L A ++ R + Sbjct: 669 GLTDH--DLWPGELAERYRADDAEVMAGR-------CQRTRVMPSVTNPGAIYETFKAPI 719 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + E + G + R + ++ S + A Sbjct: 720 IDDTDEVLGTVGFARDIRPQREMEAELAHRAELAESAVRA 759 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 29/327 (8%), Positives = 87/327 (26%), Gaps = 33/327 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G ++ +++ G + +G + + + L R W+G+ Sbjct: 499 TDLDGRIEYVNDAFIANTGYTRAEALGQNPRILKSGRTPKAIFDELWACLLRGEVWHGEL 558 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLD---- 201 G + PI + + + + R+ + L+ Sbjct: 559 VNRRKNGELY--TEVASISPIRQSDGRITHYLAIKSNVTEQKRLAEELEQYRHHLEELVE 616 Query: 202 ----------KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAH 249 + L + + ++ + + + R +++ LT++ Sbjct: 617 ARTLELRQQMRSLKALIDNLPHMAWMKDREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLW 676 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 ++ + + ++ + + + +++ E + Sbjct: 677 PGELAERYRADDAEVMAGRCQRTRVMPSVTNPGAIYETFKAPIIDDTDEVLGTVGFARDI 736 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + E + A +FL ++ + GL+ L Sbjct: 737 RPQREMEAELAHRAELAESA------------VRAKSAFLANMSHEIRTPMNAILGLAHL 784 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAA 396 L + N + + + R +A Sbjct: 785 LRRDLIDPANINRLDKIESAARHLLAV 811 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 39/376 (10%), Positives = 87/376 (23%), Gaps = 20/376 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYG 145 W D G ++ + G ++IG+ D+ + +++ + Sbjct: 641 WMKDREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLWPGELAERYRADDAEVMAGRCQRTR 700 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 G + PI E G GF R + A + Sbjct: 701 VMPSVTNPGAIY----ETFKAPIIDDTDEVLGTVGFA--RDIRPQREMEAELAHRAELAE 754 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 K + + ++ + ++ D +++ LL Sbjct: 755 SAVRAKSAFLANMSHEIRTPMNAILGLAHLLRRDLID--PANINRLDKIESAARHLLAVI 812 Query: 266 ESSL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + Q + + ++ L P L + Sbjct: 813 NDILDLSKIEAGKLQLSDENFSAVMLVDQVSSLILDEARAKGLSLKVDLDPELPWMRGDV 872 Query: 319 ENLTPETVDKCPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 L ++ G + LT V+D I + Sbjct: 873 TRLRQALLNYASNAVKFTHTGFVTIRVRLQERDAEGLTVRFEVEDTGIGIPPDKQARLFQ 932 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + Y +A +A+L + + ++ Q G+ Sbjct: 933 AFEQADTSTTRRYGGTGLGLAITAQLARMMGGEAGADSVAGRGSTFWFTVKLKPGQPGLL 992 Query: 435 PEDVDTRINKRKMEIE 450 + +M Sbjct: 993 VTHAHRLAAESEMRDR 1008 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 70/203 (34%), Gaps = 4/203 (1%) Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 +D A LH +++ + L A + Q ++ ++ + ++R+ + Sbjct: 25 ADEIRERALTALHQGRFHIADELLQGANAELTAMVESLRIYQVELQIQNDELLRSQRQTQ 84 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + + + + +++R G++ N A LF I + FT + + + Sbjct: 85 LALERFTAFFNGLPIAELVVDRHGLVKEANYAAQDLFELKHSHIHQHYFTRLISETDRGL 144 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 + L + R K + + + + + L Y + D +E Sbjct: 145 VAELWKRRLPEERRTLTLKEIHFNGRAGEPFIGDLHVAPLSDFEGESDDYVCAILDRTES 204 Query: 565 KQEKNKLSHAKKIAEKESSHKSD 587 +++ L + ++ + + Sbjct: 205 VRQRQALHAYGERLQRHEAELQE 227 >gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans GPE PC73] gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid protein [Xanthomonas albilineans] Length = 1370 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 128/644 (19%), Positives = 223/644 (34%), Gaps = 41/644 (6%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + E+ + Y + P P R + + A +++ Sbjct: 240 IAEMLASSPYHGSDLYLTVADSQSPDQPFYRGDSSGHASPAVGATNLRAVRSLPVYGRQW 299 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + ++N + + + YLS N + E L Sbjct: 300 RLTMQATPSFVRSLNQSSPLLDGGLVAGVSMLLAALLYLSLTNRHRRDLFLREQSQLAAL 359 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 G + + NP+ + Y + I L TLL + +N V Sbjct: 360 VGSTSEAIVAEDLQGRVTHWNPAATRIFGYTAAQAIGQP--LHTLLGSHLRDASNGDTQV 417 Query: 385 M-LYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L+ + + A + I + + E + Sbjct: 418 RELHHRNGQTVNVLASVSPIIDVDGNTIGHSHLLHDVTERVRAEARVLELNATLEQQVAQ 477 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ +IL I + EG I N A L GY + ++ + T Sbjct: 478 RTSELVTYSALQRAILAHAGYAIIATDPEGTITLFNPAAETLLGYTAQAMIGRKATGLFL 537 Query: 503 QNTPSVMNHYLTEILSLDLRQT--------------LEKITLGSTKEEKLLSLRIIIKKL 548 I S Q + K+ L + + + L Sbjct: 538 DPEQLAERAERMTIQSGIKVQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTL 597 Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 Y D++E + + +L A AE + KSDFLA +SHEIRTP+ AI+ Sbjct: 598 RDDDERVIGYLGIAVDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAIL 657 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +++N + D S +LDI+ND+LD SKIESG+++L EP L Sbjct: 658 GMLYLLQNSELPQAA----KDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDL 713 Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + + +L+ + K + + + D + Q+ +N++ NAI FT G Sbjct: 714 SQLLENIATLMTTAISAKPVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQG- 772 Query: 724 QIIISTTHTSNEEV-----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++ +S + EV + VRDTG+G+ + PF Q S R G+GLGL Sbjct: 773 EVTLSVRAFPSPEVGKIKLMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGL 832 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI-----IFPLYDTSHPH 817 +++ +V+ G+ + STP +G+ + P T+ P Sbjct: 833 TISRRLVELMGGQLEVQSTPNRGSDFYFAITFAMLP-APTAEPE 875 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 54/443 (12%), Positives = 128/443 (28%), Gaps = 63/443 (14%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G GFG +H RV + + + + + + I Q Sbjct: 99 RDYKREFPGVHGFGYIH--RVARADETAFLSEAHEDGMPALQIRELAPHDGDHFVILYSQ 156 Query: 229 SP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 P + ++ + A T P+ E +S E + + + Sbjct: 157 PPGQNNFAQGFDIASEPAQRAAALAAAYSGNSTITSPIQPFETTSNDNSEFLLLLPIYRA 216 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + + + Y L++ G +L D Y + + Sbjct: 217 GMPLETPQQRWQATTGWAYAPLNIAEMLASSPYHGSDLYLTVADSQSPDQPFYRGDSSGH 276 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 A+P+ ++ + + L S + Sbjct: 277 ASPA----VGATNLRAVRSLPVYG--------------RQWRLTMQATPSFVRSLNQSSP 318 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + ++ + N + + E QL +++ +TS+ Sbjct: 319 LLDGGLVAGVSMLLAALLYLSLTNRHRRDLF-------------LREQSQLAALVGSTSE 365 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I + +G + N A +++FGY + +P L + S Q Sbjct: 366 AIVAEDLQGRVTHWNPAATRIFGYTAAQAIGQPLHTLLGSHLRDA---------SNGDTQ 416 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579 E + + +++ + + ++ +HD++E + + ++ E Sbjct: 417 VRE----LHHRNGQTVNVLASVSPIIDVDGNTIGHSHLLHDVTERVRAEARVLELNATLE 472 Query: 580 KESSHKSDFL--------ARVSH 594 ++ + ++ L A ++H Sbjct: 473 QQVAQRTSELVTYSALQRAILAH 495 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 67/283 (23%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM----------RLCDVSDILHIDPNNHIGDLLK 138 D G + + +G A MIG +L + ++ + I + + Sbjct: 503 TDPEGTITLFNPAAETLLGYTAQAMIGRKATGLFLDPEQLAERAERMTIQSGIKVQPAFE 562 Query: 139 RQNTWYGK----TTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T W + L +P+ L + + G+ G + Sbjct: 563 SIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTLRDDDERVIGYLGIAV--DLTEQMRR 620 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++N + Sbjct: 621 ERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSELPQAAKDMIQKTD 680 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + ++ + E +L+Q + S + E + Sbjct: 681 ISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAKPVEMIVEPL 740 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + L V+ G + + +F Sbjct: 741 PKGCRWLRGDALRLNQVLVNLVGNAIKFTEQGEVTLSVRAFPS 783 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 35/373 (9%), Positives = 85/373 (22%), Gaps = 22/373 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + + G A + IG L + D +N +T + Sbjct: 371 DLQGRVTHWNPAATRIFGYTAAQAIGQPLHTLLGSHLRDASN--------GDTQVRELHH 422 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 V + + PI + G ++H A L+ Sbjct: 423 RN----GQTVNVLASVSPIIDVDGNTIGHSH--LLHDVTERVRAEARVLELNATLEQQVA 476 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + ++T + + +L ++ + + L Sbjct: 477 QRTSELVTYSALQRAI-LAHAGYAIIATDPEGTITLFNPAAETLLGYTAQAMIGRKATGL 535 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + T + + R+ Y ++ P + Sbjct: 536 FLDPEQLAERAERMTIQSGIKVQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLS 595 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + + LT+ + + SD A + Sbjct: 596 T---LRDDDERVIGYLGIAVDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTP 652 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + L + + + + + + +E Sbjct: 653 MNAILGMLYLLQNSELPQAAKDMIQKTDISARA----LLDIINDILDFSKIESGRIDLES 708 Query: 450 EVMQLCSILEATS 462 E L +LE + Sbjct: 709 EPFDLSQLLENIA 721 >gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223] Length = 1325 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 174/375 (46%), Gaps = 12/375 (3%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ + IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557 + + Q E + ++ + + + Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N + Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y I+ S +L I+ND+LD SKIE+GK+++ SLD+ + +++ L Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISL 695 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I +IP ++ D + Q+ +N+ NA+ FT G +I+IS E Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQLNE 754 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ G+ Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814 Query: 793 YIFSTPAKGTLIEII 807 + S KG+ E Sbjct: 815 SVHSEEGKGSTFEFS 829 Score = 45.4 bits (106), Expect = 0.041, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144 + + A+G ++ + + +G Y +IG ++ + +L ++Q++ Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +L G + + A+ R + +G GI+ + + Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624 Score = 45.0 bits (105), Expect = 0.049, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + E L+ L + S + E L Sbjct: 414 LQVNHQPIGLLELGTVGMLSIQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473 Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E +D P P + ++G N FL L + D I S Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + I + + + ++ + GI + + Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586 Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475 + ++++ ++ L S + I ++ + Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646 Query: 476 STNRAVSKLFGYPVEDILRKPFT 498 N + L G + + Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669 >gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 1741 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 115/742 (15%), Positives = 260/742 (35%), Gaps = 38/742 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143 + +D ++++ K +++G + + I I ++ Sbjct: 1024 IYVMDLQNRFILVNQQYEKLFHTTQSEIVGKSVYETW-PDDIAYQYAINNRQVITTGMAI 1082 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G + Y+ I P+ RN + GI R K Sbjct: 1083 EVEEMVPQEDGLHTYLSIKF---PLKDRNGII--YAMCGISTDITERKLAEDSLLRFHKA 1137 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + Y S Q + + + + + + ++ Sbjct: 1138 MESTSDAIIFGDILNISNYANPSFQELYGYNLEQLQAAGGVCTIFQEPQKQREIMARVMK 1197 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E S + + + + +++++ + + + +EG L Sbjct: 1198 GE--SWRGEVAMRSRDGHLLQVDLRADAIRDSNGKIIGTVCIHTDITKRQQVEEGLKLRD 1255 Query: 324 ETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 +D + + Y NP+F +T Y S + I L + + Sbjct: 1256 RAIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNF---RLFQSADIDQLG 1312 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + L + + A + L + + + L +Q + GI+ + + Sbjct: 1313 LRE---LSTAMQAGKACTVVLRNYRKDG-SLLWNELNISPVYDQTGQLTHYIGIQTDITE 1368 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKP- 496 + + + + +L +L ++ I G + + ++ + GY ++ + Sbjct: 1369 RKQAETALLVSQQRLQYLLTSSPAVIYTCKTCGDFGSIFVSNNITTITGYEAQEFIENSD 1428 Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 + + + L+ +L +T + K+ L + + + Sbjct: 1429 FWFNHIHPEDAPSVLKKLSSVLE---AETYKLEYRFLHKDGTYHWLYDQRRVVKDDTKNP 1485 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI++ KQ + L A + ++ S KS F++ SHE RTPL+ I+ SE + Sbjct: 1486 VEMVGYLIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSE-LL 1544 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + + + I + + +++ND+L I K E+GK+ +P+ + Sbjct: 1545 EHYRHKWTEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPKPLDVVAYCRNL 1604 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + +QL N K++ + + + D + + I +N++SNAI ++P + + Sbjct: 1605 VEEIQLNLNNKQVDFISEYQS--MSCCMDEKLLGHILINLISNAIKYSPVNSNVQVKFYC 1662 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V D G+G+ ++ + F + N GTGLGL + K VD + G+ Sbjct: 1663 RDQ-CAVFEVHDWGIGIPAEDITHLFESFYRAKNVGN--ILGTGLGLAIVKKCVDVHEGE 1719 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 + S GTL + PL Sbjct: 1720 ISVSSNSEIGTLFTVNIPLKQQ 1741 Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats. Identities = 66/507 (13%), Positives = 163/507 (32%), Gaps = 32/507 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144 W +D + +S + +G +++G D+ + I ++ Q + Sbjct: 897 VWEVDENAIYTYVSPKAKDILGYEPQELLGRTPLDMMPPTEAERVMKIFNSIIAAQQPFK 956 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +G + + + + +PI+ +F G+RG + + ++ Sbjct: 957 CLENTNVHQDGHLVVL--ETSGVPIFDAVGKFCGYRGVD--RDITARKEVETNLYQTQQQ 1012 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + V + H V D + Sbjct: 1013 LQVILDNSPAIIYVMDLQNRFILVNQQYEKLFHTTQSEIVGKSVYETWPDDIAYQYAINN 1072 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E E+ +T L++ + + + ++ Sbjct: 1073 RQVITTGMAIEVEEMVPQEDGLHTYLSIKFPLKDRNGIIYAMCGISTDITERKLAEDSLL 1132 Query: 321 LTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + ++ N+ YANPSF L Y +++ ++ AGG+ T+ P+ Sbjct: 1133 RFHKAMESTSDAIIFGDILNISNYANPSFQELYGY-NLEQLQAAGGVCTIFQEPQ----- 1186 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + +M ++ + L + + + + I + Sbjct: 1187 KQREIMARVMKGESWRGEV---AMRSRDGHLLQVDLRADAIRDSNGKIIGTVCIHTDITK 1243 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRKP 496 + + +++ ++A+S+GI I + I+ N A ++ GY ++++ + Sbjct: 1244 RQQVEEGLKLRDR----AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQN 1299 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 F +F + + L+ + T+ + K+ LL + I + + Sbjct: 1300 FRLFQSADIDQLGLRELSTAMQAGKACTV--VLRNYRKDGSLLWNELNISPVYDQTGQLT 1357 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579 Y DI+E KQ + L +++ + Sbjct: 1358 HYIGIQTDITERKQAETALLVSQQRLQ 1384 Score = 145 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 61/570 (10%), Positives = 137/570 (24%), Gaps = 68/570 (11%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 SE F F + W GYL+ ++ + GN ++G + + Sbjct: 588 SEERFRFLAESIPQQ-VWIARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNR 646 Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 I W Y AL + FG Sbjct: 647 CLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNII--NWFGTNTDIDD 704 Query: 190 DNDPRALGKR--------------------LDKKFSHLHEI-----------------KK 212 L + ++ Sbjct: 705 RKRTEEALAERVKLSDFRSAVDTILTQSYTLQDLMHGSADAVVKHLNAAFARIWILNKQE 764 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 ++ + + L + PL+++ + + E Sbjct: 765 NLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQIGKPHLTNSVQTDPLISNPDWAKQEG 824 Query: 273 EDFHTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRN--------HPSLSAYFDEGE 319 + + G + Q S+ F+ L A E Sbjct: 825 IVA-FAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHSE 883 Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V+ + + Y +P + Y+ + + LD ++ Sbjct: 884 ERFRNLVETSSDWVWEVDENAIYTYVSPKAKDILGYEPQELLGRTP-----LDMMPPTEA 938 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + +T + + + + + G++ + Sbjct: 939 ERVMKIFNSIIA-AQQPFKCLENTNVHQDGHLVVLETSGVPIFDAVGKFCGYRGVDRDIT 997 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + QL IL+ + I +++ + + N+ KLF +I+ K Sbjct: 998 ARKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILVNQQYEKLFHTTQSEIVGKSVY 1057 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---- 554 + ++++ + +E + ++ L I L + Sbjct: 1058 ETWPDDIAYQYAINNRQVITTGMA--IEVEEMVPQEDGLHTYLSIKF-PLKDRNGIIYAM 1114 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 DI+E K ++ L K E S Sbjct: 1115 CGISTDITERKLAEDSLLRFHKAMESTSDA 1144 Score = 143 bits (360), Expect = 2e-31, Method: Composition-based stats. Identities = 57/529 (10%), Positives = 134/529 (25%), Gaps = 62/529 (11%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEG 154 ++ + G+ + IG + + + + + L + G Sbjct: 193 IFFNKAWLELTGSTLEQEIGKSWSEKLHPEDLQGFLDVYLSAFHTHQFFSVEYRLLGLNG 252 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 Y+ + +P ++ N +F+G+ I A + + E Sbjct: 253 E--YLWLLNIGVPRFTSNGDFAGYINSCI--DITEHKQYFAALEESTNRLKLALEATNTI 308 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 D +P +++ S + H DD K + S E E Sbjct: 309 YWERNLSNDQLFFLNPVIEFGDSEELTHSEVMSFFHPDDREKVDMAAQEAIANCSCLEIE 368 Query: 274 DFHTINL-------------------------------------NQYTKKQYFGTLQNNS 296 + Q +Q L+ Sbjct: 369 HRLPVAGQPSKYKWFLSKSTILTDTTGKPTRMIGISMDITDRVEAQDALEQANQELERRV 428 Query: 297 KESFEYLSHR---------NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346 E L + + + + +D P + + N Sbjct: 429 AERTLALQKANRQLLAEIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVFLGCNR 488 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 F L + ++I L + +D + V + ++ + + Sbjct: 489 KFAKLLGFDYPENIIGKTAHD-FLANLQDADLHRQSDVRVIETNTPEYHI---VEPLLKP 544 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + + + + + +E + + E+ + Sbjct: 545 NGQKIWLEKNKIPLHDPKGNVVGILSTLEDITERKQVQEALEKSEERFRFLAESIPQQVW 604 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I +G + NR + FG E IL + + + + ++ +E Sbjct: 605 IARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNRCLEIWQHCVATGEPLDVE 664 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 T ++ L S + T DI + K+ + L Sbjct: 665 F-RWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDIDDRKRTEEAL 712 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 47/545 (8%), Positives = 135/545 (24%), Gaps = 58/545 (10%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142 W D + + + K +G + +IG D L D + H +++ Sbjct: 476 WK-DRNSVFLGCNRKFAKLLGFDYPENIIGKTAHDFLANL-QDADLHRQSDVRVIETNTP 533 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 Y + ++ +P++ G + + ++ ++ Sbjct: 534 EYHIVEPLLKPN-GQKIWLEKNKIPLHDPKGNVVGI--LSTLEDITERKQVQEALEKSEE 590 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTE 257 +F L E + + + + + + H DD Sbjct: 591 RFRFLAESIPQQVWIARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNRCLEI 650 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + E E T + L+++ + +E Sbjct: 651 WQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDIDDRKRTEE 710 Query: 318 GENLTPETVD-------------KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 + D + + + N +F + +++ Sbjct: 711 ALAERVKLSDFRSAVDTILTQSYTLQDLMHGSADAVVKHLNAAFARIWILNKQENLLELQ 770 Query: 365 GLSTLLDA-PKLSDNNAIKPVML-------------------------YRSDRTCIAASA 398 S + + + +A + Sbjct: 771 VSSGRYTHLDGSHRCIPVGQCKIGLIAQIGKPHLTNSVQTDPLISNPDWAKQEGIVAFAG 830 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 ++ +AM + F + + + + + +++ Sbjct: 831 YPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHSEERFRNLV 890 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E +SD + ++ I + + GY +++L + + + I++ Sbjct: 891 ETSSDWVWEVDENAIYTYVSPKAKDILGYEPQELLGRTPLDMMPPTEAERVMKIFNSIIA 950 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574 ++ L+ L + + Y DI+ K+ + L Sbjct: 951 AQQP-FKCLENTNVHQDGHLVVLETSGVPIFDAVGKFCGYRGVDRDITARKEVETNLYQT 1009 Query: 575 KKIAE 579 ++ + Sbjct: 1010 QQQLQ 1014 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 55/461 (11%), Positives = 124/461 (26%), Gaps = 73/461 (15%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 +V+ R+ L I +S ++ ++ Sbjct: 157 AVVNPLDAIGASDESLWRVANTAPILIWISATDTSCIFFNKAWLEL----TGSTLEQEIG 212 Query: 242 SLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTK----KQYFGTLQNNS 296 H +D+ L + +N F + + + Sbjct: 213 KSWSEKLHPEDLQGFLDVYLSAFHTHQFFSVEYRLLGLNGEYLWLLNIGVPRFTSNGDFA 272 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKY 354 + H A +E N ++ ++ S+ LF+ NP + ++ Sbjct: 273 GYINSCIDITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNP----VIEF 328 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 +++ + +S + + A + ++ +C+ RL + Sbjct: 329 GDSEELTHSEVMSFFHPDDREKVDMAAQE---AIANCSCLEIEHRL-PVAGQPSKYKWFL 384 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT---------------------------------- 440 + + GI + D Sbjct: 385 SKSTILTDTTGKPTRMIGISMDITDRVEAQDALEQANQELERRVAERTLALQKANRQLLA 444 Query: 441 -----RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILR 494 +I + ++ L +++ + +R + L NR +KL G+ E+I+ Sbjct: 445 EIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVFLGCNRKFAKLLGFDYPENIIG 504 Query: 495 KPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 K FL + ++ + + L + + L L Sbjct: 505 KTAHDFLANLQDADLHRQSDVRVIETNTPEYHIVEPLLK-PNGQKIWLEKNKIPLHDPKG 563 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 T+ DI+E KQ + L ++S + FLA Sbjct: 564 NVVGILSTLEDITERKQVQEAL--------EKSEERFRFLA 596 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 39/326 (11%), Positives = 91/326 (27%), Gaps = 37/326 (11%) Query: 324 ETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + PI ++ + + N ++L LT +++ L + Sbjct: 174 RVANTAPILIWISATDTSCIFFNKAWLELTG-STLEQEIGKSWSEKLHPEDLQGFLDVYL 232 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + RL + L + I + + + + + Sbjct: 233 SAFHTH---QFFSVEYRLLGL---NGEYLWLLNIGVPRFTSNGDFAGYINSCIDITEHKQ 286 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +E +L LEAT+ N + N + FG E++ F Sbjct: 287 YFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNPVIE--FG-DSEELTHSEVMSFF 343 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + ++ E ++ +E + + K L ++ Sbjct: 344 HPDDREKVDMAAQEAIANCSCLEIEHRLPVAGQPSKYKWFLSKSTILTDTTGKPTRMIGI 403 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI++ + ++ L A + E+ + ++ + Q Sbjct: 404 SMDITDRVEAQDALEQANQELERRVAERT------------------LALQKANRQLLAE 445 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVND 643 +G+ + A R +L +V D Sbjct: 446 IGD---RQIAQEQLRQSQQMLQLVID 468 >gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 836 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 104/405 (25%), Positives = 188/405 (46%), Gaps = 17/405 (4%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + + ++ E E +L ++++ T D + I +++G I N Sbjct: 294 GRRLIINPFQKLEQSRTQLAQQAELLMNKEREATRLANVVKHTRDAVLITDKQGRIEWVN 353 Query: 479 RAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 +A + G+ ++I+ KP T+ + + L + + +E + TK+ Sbjct: 354 QAFESMTGFHKDEIIGIKPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVEILNFSRTKQAY 413 Query: 538 LLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + I + DI+ K+ + KL +A A+ + K+ FLA +SHE Sbjct: 414 WVDIEISPVFGANGELDKFIAVERDITATKKLQRKLENAVVAADSANIAKTQFLATMSHE 473 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ ++G +V+ ++ + + E + I SGN ++ I+ND+LD++K+E K+ Sbjct: 474 IRTPMNGVLGMVQVMLSEA----KDKQQKENLSLILESGNHLISILNDILDLTKVEQNKI 529 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANNIPRILADLRSVKQIALNILS 713 L P ++++ ++ S Q EK I I N+ L D V+Q+ N+L+ Sbjct: 530 ELESCPFNIEQIIAPLRSTYQAVCQEKGIELNIECHIDANM-TFLGDRNRVRQVMYNLLN 588 Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI FT GG ++I+ T+ + V+D+G+G+ LE+ +PF Q S Sbjct: 589 NAIKFTERGGVTVVITNNPTTPSLLRFSVQDSGIGIETSALERIFEPFVQADASTTREYG 648 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815 GTGLGL + K +V+ G S +GT EI P+ D H Sbjct: 649 GTGLGLAIVKQLVEKMGGTIDATSEQGQGTRFEFEIKLPVTDGEH 693 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 10/194 (5%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 ++ LL+ +L +I + + ++ Q + + L Sbjct: 266 AQREELLSRLAIALIIALLISSIIVYLFGRRLIINPFQKLEQSRTQL---AQQAELLMNK 322 Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + V + G + + N +F +T + + I I G L K Sbjct: 323 EREATRLANVVKHTRDAVLITDKQGRIEWVNQAFESMTGFHKDEIIGIKPGT---LLQGK 379 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 S+ AI+ + ++ + + + E +E Sbjct: 380 GSNEKAIEKLRKAVKEQQPTRVEILNFSRTK---QAYWVDIEISPVFGANGELDKFIAVE 436 Query: 435 PEDVDTRINKRKME 448 + T+ +RK+E Sbjct: 437 RDITATKKLQRKLE 450 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 42/139 (30%), Gaps = 6/139 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G ++ +++ G + ++IG++ + + + +K Q + Sbjct: 343 TDKQGRIEWVNQAFESMTGFHKDEIIGIKPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVE 402 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +V I+++ P++ N E F + + + Sbjct: 403 ILNFSRTKQAYWVDIEIS--PVFGANGELDKF--IAVERDITATKKLQRKLENAVVAADS 458 Query: 207 LHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 459 ANIAKTQFLATMSHEIRTP 477 >gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] Length = 491 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 107/484 (22%), Positives = 191/484 (39%), Gaps = 19/484 (3%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + G + N + Y + + + + + Sbjct: 18 MMLDHAGKVLEWNDGAERMFGYSRSEAVG------ARIHELVTVPGSEAEQDHFIAETTE 71 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 C + + + + ++ +DV +R + Sbjct: 72 CGRGTFEALRRRNDG----TLIYVVISGKVGQGAGELYLLFSEKDVTQLKVQRDSKSLES 127 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + +L++ DGI I+N G IL NR LFGY +++ +P L Q S + Sbjct: 128 KFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDELRARPIEDLLPQRFRSAHKGH 187 Query: 513 LTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEK 568 + S + + G K+ + I + L + + D+SE + + Sbjct: 188 RSHYFSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLKTEETPVVMSAIRDVSERRGFE 247 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L + K FLA +SHE+RTPL A+IGF+ + + G L + + Sbjct: 248 QALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGELNPEQTRQ-LE 306 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + + +L ++NDLL+++KIE+GK+ L+FEP+ V E + ++ A K + + Sbjct: 307 IVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKGLELIL 366 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745 + ++ D R++ QI +N++ NAI FT G + I + L V DTG Sbjct: 367 ATQSDPIVFETDRRALSQIIINLVGNAIKFTLHGS-VRIDLVLEEAGKKRRLALSVSDTG 425 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ EL + F Q S+ EGTGLGL L++ + G+ ST G++ Sbjct: 426 PGIGEEELSSLFEAFVQGHASRMKGVEGTGLGLHLSRKLAVLLGGELSCTSTLGTGSVFT 485 Query: 806 IIFP 809 +I P Sbjct: 486 LILP 489 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 4/106 (3%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 D + +++ G +L N ++FGY + + + + I Sbjct: 14 PDALMMLDHAGKVLEWNDGAERMFGYSRSEAVGARIHELVTVPGSEAEQDHF--IAETTE 71 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWK 565 L + L+ + I K + L D+++ K Sbjct: 72 CGRGTFEALRRRNDGTLIYVVISGKVGQGAGELYLLFSEKDVTQLK 117 Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats. Identities = 49/412 (11%), Positives = 107/412 (25%), Gaps = 51/412 (12%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH- 126 + + + + +D G + E ++ + G + +G R+ ++ + Sbjct: 1 MPDQVDYRWIADDPDALMM--LDHAGKVLEWNDGAERMFGYSRSEAVGARIHELVTVPGS 58 Query: 127 -IDPNNHIGDLLK-RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + ++ I + + + T+ + +GT +YV I + + +G Sbjct: 59 EAEQDHFIAETTECGRGTF--EALRRRNDGTLIYVV-------ISGKVGQGAGELYLLFS 109 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + K L+ KF L + + I L ++ Sbjct: 110 EKDVTQLKVQRDSKSLESKFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDR----- 164 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D++ LL S + H + + L K+ E+ Sbjct: 165 ------DELRARPIEDLLPQRFRSAHKGHRSHYFSTPRTRAMGAGLELYGLRKDGTEF-- 216 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 +E + D F + K+++ + Sbjct: 217 PVEISLSPLKTEETPVVMSAIRD--------------VSERRGFEQALQEKNLELLAANR 262 Query: 365 GLSTLLDAPKLSDNNAIKPV------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 L + + V +L + R I N L Sbjct: 263 AKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGELNPEQTRQLEIVRNNARHLLALINDL 322 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ----LCSILEATSDGIA 466 + + EP D + + + L IL SD I Sbjct: 323 LNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKGLELILATQSDPIV 374 >gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271] Length = 558 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 178/388 (45%), Gaps = 26/388 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + +E E +L +++E G+ +I+ G I NR+ + Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542 F E+ L + + + + EI +++ + + LG ++ + Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 II L HDI+E K+ + + DFLA VSHE++TP+T+ Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349 Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I GFSE + + G + N ++ E + + I + + ++ DLLD+SKIE L Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 406 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + + ++ EK I ++ + + ++ D +KQI +N+++NAI +TP+ Sbjct: 407 VDMKGLLEDIHMVLDNKTGEKEISLQVNALKGV-SVIGDPSRLKQIFINLINNAIVYTPA 465 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG + + ++V DTG+G++ E+ + + F ++ ++ GTGLGL + Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K +V+A+ G + S +GT ++ P Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552 >gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 1364 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 125/707 (17%), Positives = 244/707 (34%), Gaps = 65/707 (9%) Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + PI + G+R GF I P+ + + Sbjct: 185 SGEPIMTSPISLFGYRVPSESGFWLLLAIYREGMPLQTPQQRMVATSGWVYAPFSLAQIV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ DI + + A + V+ T ++ P Sbjct: 245 QSALGERDDIALDMSDRNEPTHNLYRSGTPAIDSALRPPVVTLLPMYGRTWVITARPTAS 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + + L N + L Sbjct: 305 FIASLNQNSPWLIGGLVMAGSVLFAALLALYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + NP+ + Y + + I+ L+ LL + Sbjct: 365 AETPDGRITLWNPAAEAMFGYTAEEAIDQ--DLTMLLAPQAYAMPEIDHADA------AL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 A ++ T+ + + + + + D + ++ Sbjct: 417 AANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A K+ GY +++ + Sbjct: 477 LEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGR 536 Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + L + + TLE + + + L + Sbjct: 537 RKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G+GLGL +++ +++ G+ + S P +G+ + L ++ P + Sbjct: 832 GGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 878 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138 D+ G++ + K +G A ++IG R + + + L+ Sbjct: 509 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 32/376 (8%), Positives = 79/376 (21%), Gaps = 14/376 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149 G + + G A + I L + + P D N +T Sbjct: 368 PDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAPQAYAMPEIDHADAALAANASAAQTMH 427 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G ++ + + PI SG F L+ H Sbjct: 428 -HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRSIDLNASLEHQVA 482 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + G + + + + + + + + Sbjct: 483 ERTGELVKFSVLQRAILAHAGYAIIATDSS--GFVTLFNPAAEKMLGYNAAEVIGRRKAS 540 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E + Q + + + S + + + + Sbjct: 541 QFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 H + + LT+ K + + SD A + Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + L + + I + + + +E Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714 Query: 450 EVMQLCSILEATSDGI 465 L + + ++ + Sbjct: 715 APFDLNQLFDNIAELM 730 >gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 1336 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 128/832 (15%), Positives = 264/832 (31%), Gaps = 84/832 (10%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT--------WNIDAHGYLKEISEELP 103 F+D ++ R R+ W +D G+ + L Sbjct: 105 RPFSDGELRVALEMGLHQAQAESRLRESERRFRYVVEGVADGIWALDEFGFTSFGNARLR 164 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 + +G ++ ++ + + L R + G+ + L Sbjct: 165 QILGRGQQELTQKSAFELFEPATA---GVLRQNLARCRSGQGEPFELSFTTPQGRLVQAL 221 Query: 164 -AALPIYSRNREFSGF--------------RGF--------GIVHVNRVDNDPRAL---- 196 + P+ R G RG + + V Sbjct: 222 FSPRPMLDRLGAPRGVILAITDVSALKRAQRGLEWQSRVDQALARIADVLLHSEVTFERI 281 Query: 197 -----------------------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + + + E+ + P Sbjct: 282 TKVILDNARELTQSKLGYVGSIDPRTRELVNHTISEVMGDQCQASSRSGRVAFSPRPDGS 341 Query: 234 --------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYT 284 L K + L PL ++ + I L Sbjct: 342 YPGLWGHCLNTKEAFFTERPADHPAAQGLPPGHLPLTRFLSAPAIIDDHLVGQIALANAG 401 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343 + + L+ ++ + Y + E D + G + Y Sbjct: 402 RPYHDDDLKAVTRIADLYALAIQRQEAMTALRDSERKYRLLADNSSDTIWTADLGLRIDY 461 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 +P+ L Y + ++++ + + S + A Sbjct: 462 ISPAVHDLLGYTPEEVLKLSVTDLISARSLIKIQQLLRDELAREASQPGSSPSHALELEH 521 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + + G + R + + + + ++ D Sbjct: 522 TRKDGQIIVVEVSARFLRGPDGRPVGLLGSSRDVTQRRKAQDDLAESESRYRDLFDSIED 581 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLR 522 + + +G+++S N+A++ G P + I+ F + + YL ++ Sbjct: 582 FVYSHDEDGVLISANKALAAAVGRPRQRIIGHSIAEFTAERLRQNFHDIYLRQLRETGQH 641 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + L + + + + + + Y + HD++E + +L AK+ AE Sbjct: 642 EGL-FVLTSQDGQARHVEYYTSMGRDRSGGIIYRGSAHDVTERRHLTRQLQRAKEEAEAA 700 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KSDFLA +SHEIRTP+ AIIG + + E+ + + ++ ++ Sbjct: 701 SRAKSDFLANMSHEIRTPMNAIIGMTNLTLMTSLTR----EQTEFLGTVKSAAESLMQLL 756 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 D+LD+SKIE+ ++ L L + + + + + A+ K + + A P R+ D Sbjct: 757 GDILDLSKIEARQLALENVEFDLADLLEATLRDLAVRAHGKGLELIGRMAPGAPGRLRGD 816 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756 ++QI +N++ NAI FT G Q+++ + E+ V DTGVG+ + + Sbjct: 817 PLRLRQILVNLVGNAIKFTDHG-QVLVEARLEAMADNKLEMRFSVVDTGVGIEPENIGRV 875 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q +S R GTGLG ++K + + G+ ++ STP +G+ Sbjct: 876 FDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVESTPGRGSAFHFTI 927 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 77/270 (28%), Gaps = 15/270 (5%) Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 D+ P + L + ++ + L+DA + ++ L Sbjct: 11 DQAHDPSLLARRLEALGYQGCCLATSGQMALGLLGQFDVDLALVDAALPGPLDGVETARL 70 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRIN 443 R + W + L + + Sbjct: 71 LREAHALPVV-----FMAWPDDRGLLERAKHAGPFGYLLRPFSDGELRVALEMGLHQAQA 125 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++ + ++E +DGI ++ G N + ++ G +++ +K E Sbjct: 126 ESRLRESERRFRYVVEGVADGIWALDEFGFTSFGNARLRQILGRGQQELTQKSAFELFEP 185 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMH 559 T V+ L S +T + +L+ + +L L + Sbjct: 186 ATAGVLRQNLARCRSGQGEP---FELSFTTPQGRLVQALFSPRPMLDRLGAPRGVILAIT 242 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 D+S K+ + L ++ + + L Sbjct: 243 DVSALKRAQRGLEWQSRVDQALARIADVLL 272 >gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803] Length = 1261 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 111/491 (22%), Positives = 197/491 (40%), Gaps = 22/491 (4%) Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + ++ P V GN+ AN S L Y + I + L L + + S + Sbjct: 272 YRQIIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQTELIGQSIALLGLAELLQQSLHLL 331 Query: 381 IKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + I + + + M + Sbjct: 332 QEGEDV----GPTCPLDQEEFEILGTRYDGSEFPIEVSLTSLPSLSQREMNIFASVRDIS 387 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + ++++ + L S+L++ G+AI GI N + +L V D +K + Sbjct: 388 ARQEAQQQILRQREHLQSVLDSAPVGVAIT-VNGITQFANPHIGELVDLKVGDSPQKIYV 446 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 L E+ Q+ E + + + + Sbjct: 447 ------DLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRDILATFLATDYEGQKGILGWL 500 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K + ++ AK++AE+ S K+DFLA +SHEIRTP+ A+IG + + P Sbjct: 501 ADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTP- 559 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R EY + I SG +L ++ND+LD SKIE+GK+ + LD+ + +L+ Sbjct: 560 ---RQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEK 616 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A K + + N+PR + D + QI +N +NA+ FT G I++ +++ Sbjct: 617 ATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQD 676 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V+L V+DTG+G+ + F Q +S GTGLGL + K + + G+ + Sbjct: 677 VVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGV 736 Query: 795 FSTPAKGTLIE 805 S +G+ Sbjct: 737 ESEYGQGSTFW 747 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 7/157 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + E ++ + I+E +GI +++ +G I+ N ++ KLFGY Sbjct: 248 MLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQ 307 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIK 546 +++ + + H L E + L E LG+ + + + + Sbjct: 308 TELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLT 367 Query: 547 KLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 LP ++ DIS ++ + ++ ++ + Sbjct: 368 SLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQ 404 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 25/286 (8%), Positives = 68/286 (23%), Gaps = 17/286 (5%) Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230 +G ++ + N + + + + + E V + +I + Sbjct: 243 LTGGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKL 302 Query: 231 -----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + + L E +L+ + T + + +++ Sbjct: 303 FGYSQTELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPI 362 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNL 341 + +L + S+ + S + +D P+ + +G Sbjct: 363 EVSLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAITVNGIT 422 Query: 342 FYANPSFLLL----TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 +ANP L G +L+ + + +Y Sbjct: 423 QFANPHIGELVDLKVGDSPQKIYVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRDIL 482 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 A + + + M + E+ Sbjct: 483 ATFLATDYEGQKGILGWLADITPIKAAEAEMKRAKELAEEASRIKA 528 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 65/245 (26%), Gaps = 15/245 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT------ 142 +DA G + + + K G ++IG + + + + H+ + Sbjct: 286 LDAQGNIILANTSIEKLFGYSQTELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQ 345 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G+ + + L +LP S RE F V + + R + Sbjct: 346 EEFEILGTRYDGSEFPIEVSLTSLPSLS-QRE---MNIFASVRDISARQEAQQQILRQRE 401 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + ++ F+ P + + + + D + + L Sbjct: 402 HLQSVLDSAPVGVAITVNGITQFAN---PHIGELVDLKVGDSPQKIYVDLGDRQQMLEEL 458 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 T S + L + + L + + Sbjct: 459 TQFGRSQSRVYKMYNPRGEIR--DILATFLATDYEGQKGILGWLADITPIKAAEAEMKRA 516 Query: 323 PETVD 327 E + Sbjct: 517 KELAE 521 >gi|291568868|dbj|BAI91140.1| multi-sensor signal transduction histidine kinase [Arthrospira platensis NIES-39] Length = 856 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 106/587 (18%), Positives = 204/587 (34%), Gaps = 41/587 (6%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + +N N L F + Sbjct: 275 QRGTAIAHLLTATFAVWGVLRGSGPFMDNLNENPQVFSLQAFILVMTITGLFLAGAVEER 334 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLS 367 ++ A GE + + L + + Sbjct: 335 QTVEASLRSGEASLATAQRIAKLGHWELDIRRLTCSWSDQLYRIFGVNPDQVTPSIDS-- 392 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + ++ I S + + + + Sbjct: 393 --FMQYIHPLDRLRVETAISQAISEQIPYSIDYRIARPDGQERFVV-------EQAIVTT 443 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFG 486 + + + + + + + +A+ GI I EG + N + + G Sbjct: 444 THITSTVQDITERKRAEIALRASEERFSRVFKASPIGIIITTAQEGRFVDVNDSFLRQLG 503 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + E ++ + F + P +N + + D L + + + I Sbjct: 504 WSREQVIDRTFEDL-QMWDPDQINPIFKRLTNGDRLSNLTVEVRHKSGAIRDWLIAIEPI 562 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 +L + C DI+E KQ + +L AK+ AE+ + KS FLA +SHE+RTPL AI+G+ Sbjct: 563 QLENTPCLLTLASDITEHKQAE-ELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGY 621 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE + + +G ++ I +G +L +++D++D SKIE+G++N H E ++ Sbjct: 622 SE-LLQEDAQDIGQDDFVADLKNIHVAGQHLLTLISDIIDFSKIEAGRINFHLEKCQINT 680 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + E + + A + + A + + D+ V+Q LN+LSNA FT G Q+I Sbjct: 681 LLWEVETTIAPLAEKNHNQLTLEVAPGLDLMYTDVTKVRQSLLNLLSNACKFTEQG-QVI 739 Query: 727 IST------------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + T + + +V+DTG+GM ++ PF Q Sbjct: 740 LRVWQQLIPATDLPDLPIYHSPESPSETLSEISFIFWQVQDTGIGMNERQIATVFSPFTQ 799 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S + GTGLGL + + G ++ S +G+ + + P Sbjct: 800 ADESTTRKYGGTGLGLSITHKLCQMMGGDLWVESQLNQGSTLTMRLP 846 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 33/306 (10%), Positives = 69/306 (22%), Gaps = 26/306 (8%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-------EIKKGHSSVEKEKYDIFS 226 +G G V + G+ + +I++ S + Y IF Sbjct: 321 TITGLFLAGAVEERQTVEASLRSGEASLATAQRIAKLGHWELDIRRLTCSWSDQLYRIFG 380 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++ + S +Y D + SE+ + + Sbjct: 381 VNP----DQVTPSIDSFMQYIHPLDRLRVETAISQAISEQIPYSIDYRIARPDGQERFVV 436 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYA 344 + + + + E PI + + G Sbjct: 437 EQ--AIVTTTHITSTVQDITERKRAEIALRASEERFSRVFKASPIGIIITTAQEGRFVDV 494 Query: 345 NPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 N SFL + I+ ++ + D + V + Sbjct: 495 NDSFLRQLGWSREQVIDRTFEDLQMWDPDQINPIFKRLTNGDRLSNLTVEVRHKSGAIRD 554 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + IQ L + Q E + + + +L Sbjct: 555 WLIAIEPIQLENTPCLLTLASDITEHKQAEELRRAKEAAEQANQAKS--LFLANMSHELR 612 Query: 456 SILEAT 461 + L A Sbjct: 613 TPLNAI 618 Score = 45.0 bits (105), Expect = 0.052, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 8/139 (5%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 SE F + G ++++ + +G ++I D+ D Sbjct: 465 ASEERFSRVFKASPIGIIITTAQEGRFVDVNDSFLRQLGWSREQVIDRTFEDLQM-WDPD 523 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VN 187 N I L + T + + + +A PI + + Sbjct: 524 QINPIFKRLTNGDRLSNLTVEVRHKSGAIRDWL-IAIEPI-----QLENTPCLLTLASDI 577 Query: 188 RVDNDPRALGKRLDKKFSH 206 L + + Sbjct: 578 TEHKQAEELRRAKEAAEQA 596 >gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 1513 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 122/729 (16%), Positives = 242/729 (33%), Gaps = 59/729 (8%) Query: 104 KTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 +G R L + + + + +R N G P+ P Sbjct: 392 AVLGFDVGSETRRRSALEEAARTGFATITDPLTPANERGNPSVGF-LYLPVSAPGAPDPA 450 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 AA + RGFG R GK + + + + E Sbjct: 451 GYAAAWFRYEALLRTVLRGFGGGSWVRWTLLQLREGKEPLLLAASVPQGRSRPLPPSWEA 510 Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 Y I + + + L +L + Sbjct: 511 YQIPLFAFGKTFVLRPAPGEAFWGQHLSW-----VRWLVLGAGLLITLAGAVFAGYLANR 565 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY---SH 338 + + GT + E + + P+ F++ Sbjct: 566 RLLLAREVGTRTEELRRVLETI----------------RRERDLFSGGPVVVFLWGTDET 609 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G + Y + + + Y +++ G L L P+ D + R+ S Sbjct: 610 GTVEYVSGNVEAVWGYTP-EEMTRKGFLFMELVHPEDRDRVVREIRDHADQGRSHFEQSY 668 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 RL + + + ++ E G + + ++ + +L Sbjct: 669 RL---RRRDGEYRWVADFTVLEKDEAGEVERLRGYLVDQTVLKEAEKALRATGEELDRYF 725 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + D + I EG + N +++ GY + ++ + F + L + Sbjct: 726 TLSLDLLCIATTEGRFVRLNPEWTRVLGYAMGELEGRSFLDLVHPEDLPATLEALGRL-- 783 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-- 576 + L+ + K+ + + + DIS+ + + +L A + Sbjct: 784 GGQEEVLDFVNRYRCKDGTYRWIEWRSRPF--GTLIYAVARDISDRVETEARLQEANRRL 841 Query: 577 ------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 A++ + KSDFLA +SHEIRTP+ I+G + ++ + P Sbjct: 842 EEQTALARSMALQADQANRAKSDFLANMSHEIRTPMNGILGMAALLLDTDLTP----EQR 897 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + S +L ++ND+LD+SKIE+G++ L L + + + A K + Sbjct: 898 HFGEIVQASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGL 957 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739 S ++P + D ++Q+ N+L NA+ FT G ++++ +V Sbjct: 958 EFLGSVEPDVPSALRGDPGRLRQVLTNLLGNAVKFTHRG-EVVVRARRVSESPERVQVRF 1016 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+ +++ + F Q S GTGLGL ++K +V+ G+ + S Sbjct: 1017 SVRDTGIGIPADKVDLLFQKFTQADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREG 1076 Query: 800 KGTLIEIIF 808 G+ Sbjct: 1077 VGSEFWFTL 1085 >gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451] Length = 1325 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 12/375 (3%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ + IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557 + + Q E + ++ + + + Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N + Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y I+ S +L I+ND+LD SKIE+GK+N+ SLD+ + +++ L Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISL 695 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I +IP ++ D + Q+ +N+ NA+ FT G +I+IS E Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQLNE 754 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ G+ Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814 Query: 793 YIFSTPAKGTLIEII 807 + S KG+ E Sbjct: 815 SVHSEEGKGSTFEFS 829 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + E L+ L + S + E L Sbjct: 414 LQVNHQPIGLLELGTVGMLSMQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473 Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E +D P P + ++G N FL L + D I S Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + I + + + ++ + GI + + Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586 Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475 + ++++ ++ L S + I ++ + Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646 Query: 476 STNRAVSKLFGYPVEDILRKPFT 498 N + L G + + Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669 Score = 45.4 bits (106), Expect = 0.040, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144 + + A+G ++ + + +G Y +IG ++ + +L ++Q++ Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +L G + + A+ R + +G GI+ + + Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624 >gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 968 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 105/610 (17%), Positives = 225/610 (36%), Gaps = 21/610 (3%) Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E ++ + E + + L V ++ K + + LL +E Sbjct: 368 AETQQQLQTAIAEAATGKTIRYEADILAPDQSVITIDFSL--KPLRKENGEIELLIAEGR 425 Query: 268 SLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPE 324 + +++ + +Q + K++ L H A E Sbjct: 426 DISDRKQAEAKLQTAMVELEQRVEERTHELKQTNAQLQAEILQHQQTEAELRNSEQQFRR 485 Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK- 382 D+ PI + + N +F + Y + + ++ D A++ Sbjct: 486 VFDEAPIGMTLADLNDRYIRVNRAFYSMLGYSQSEVMALS------FKDITHPDELALEI 539 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 P M + I ++ + + ++ E + + + + + Sbjct: 540 PYMQQLIKGEIDSFQLEKRYI-KKNKDLVWVNLTLIALRDKKGEVLYTLAMVEDITERKQ 598 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + + +I+E ++ I +G N A + F +++ F + Sbjct: 599 AMEALRQSEARYRAIVEDQTELICRFKTDGTFTFVNDAYCRYFNKQRSELIGYRFKPQIP 658 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560 + +N + T E + E + + + + D Sbjct: 659 EIDQEFVNQQFKTLSVEKPIVTYEHRVILPDNEIRWQQWTERVMFDNEVNIVEFQGVGRD 718 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K+ + ++ A + + S +S F++ VSHE RTPLTAI+ SE + ++ L + Sbjct: 719 ITPLKKAEAEIIKALEKERELSELRSSFVSLVSHEFRTPLTAILSSSE-LLDRYSKKLTD 777 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I + + + +++D+L I K E+GK+ ++L + + +Q+ + Sbjct: 778 EKKKAHHQRIQIAVSRMTQLLDDVLTIGKAEAGKLTFKPASMNLIAFCQDIVDTLQMSIS 837 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ I + D + ++ I N++SNAI ++ G ++ + T E I Sbjct: 838 QQH-SINFVCHGDCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVELTCE-GESAIFH 895 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 ++D G+G+ +++K F + N +GTGLGL + K VD + G + S K Sbjct: 896 IQDQGIGIPPEDIKKLFSSFQRAGNVGT--IQGTGLGLAIVKKCVDLHGGLITVESEVGK 953 Query: 801 GTLIEIIFPL 810 GT II PL Sbjct: 954 GTTFTIILPL 963 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 58/639 (9%), Positives = 152/639 (23%), Gaps = 129/639 (20%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRF------TWNIDAHGYLKEISEELPKTIGNYAFK 112 ++ S + + +R W + GY + ++ K +G + Sbjct: 4 FQTPSESM---DQPANREFTQTLFLRISDDLFGIW--NKEGYWQPLNPAWEKVLGWTEEE 58 Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 + ++ D + I + + L +G+ Y + +P+ Sbjct: 59 LRSHTSWELIHPD--DRDRTIAHFTSTEA-VECEHRLRHQDGS--YRWLAWKLIPVEDG- 112 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-------- 224 R +G+ A K + + + + + + Sbjct: 113 ------RLYGVGKNITETKHTEAKLKERIEFEQLITSLSHQFIQLSSDGIEHAIKHTLEK 166 Query: 225 ------------------------FSQQSPPPHLRMKNKVSSLTEYYAHKD--------- 251 + P ++ + Sbjct: 167 IGKFCECDRTYMALFSEDTATASMIQEWDAPGVSSIQPQWQDFPTASYPWGMAKLRNLET 226 Query: 252 ----------DVLKTEKYPLLTSEESSLPEQEDFHT-----------INLNQYTKKQYFG 290 + K L + S+ +N + Sbjct: 227 IQISRRSDLPPEANSLKQALELTGAKSIAIVPIAQGNHLIGYLGCSTVNAEKIWSDDILS 286 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFL 349 LQ LS + E E ++ + + GN+ N + Sbjct: 287 LLQIIGGIFANALS---RQQAESQLRESERRFRAVFNQTFQLSSLLTLEGNVVADNQTAT 343 Query: 350 LLTKYKSVDDIEIAGGLSTLL-------------DAPKLSDNNAIKPVMLYRSDRTCIAA 396 + S I A + + D++ I Sbjct: 344 DFCQLDSFQVIGYPFWQLKCWTISAETQQQLQTAIAEAATGKTIRYEADILAPDQSVITI 403 Query: 397 SARLHTIQWNRENSLAMTF--IPFEKANQFPENMPQNGIE-------------------- 434 L ++ + Q + +E Sbjct: 404 DFSLKPLRKENGEIELLIAEGRDISDRKQAEAKLQTAMVELEQRVEERTHELKQTNAQLQ 463 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 E + + + ++ Q + + G+ + + + NRA + GY +++ Sbjct: 464 AEILQHQQTEAELRNSEQQFRRVFDEAPIGMTLADLNDRYIRVNRAFYSMLGYSQSEVMA 523 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 F + ++ Y+ +++ ++ + K + L+ + + + L Sbjct: 524 LSFKDITHPDELALEIPYMQQLIKGEIDS-FQLEKRYIKKNKDLVWVNLTLIALRDKKGE 582 Query: 555 S----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DI+E KQ L ++ +++ + Sbjct: 583 VLYTLAMVEDITERKQAMEALRQSEARYRAIVEDQTELI 621 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 71/200 (35%), Gaps = 14/200 (7%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 GI + + + ++ + ++ T +++ EG +++ N+ + Sbjct: 293 GIFANALSRQQAESQLRESERRFRAVFNQTFQLSSLLTLEGNVVADNQTATDFCQLDSFQ 352 Query: 492 ILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ PF + L I +T+ ++ ++++ +K L Sbjct: 353 VIGYPFWQLKCWTISAETQQQLQTAIAEAATGKTIRYEADILAPDQSVITIDFSLKPLRK 412 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DIS+ KQ + KL A E+ ++ HE++ T Sbjct: 413 ENGEIELLIAEGRDISDRKQAEAKLQTAMVELEQRVEERT-------HELKQ--TNAQLQ 463 Query: 607 SEVIKNQRFGPLGNPRYIEY 626 +E++++Q+ ++ Sbjct: 464 AEILQHQQTEAELRNSEQQF 483 Score = 74.3 bits (181), Expect = 7e-11, Method: Composition-based stats. Identities = 22/275 (8%), Positives = 69/275 (25%), Gaps = 7/275 (2%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107 + Q + +SE F + T D + ++ +G Sbjct: 457 QTNAQLQAEILQHQQTEAELRNSEQQFRRVFDEAPIGMTL-ADLNDRYIRVNRAFYSMLG 515 Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167 +++ + D++ + L + + I+ V ++L + Sbjct: 516 YSQSEVMALSFKDITHPDELALEIPYMQQLIKGEIDSFQLEKRYIKKNKDLVWVNLTLIA 575 Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + + E +V ++ + ++ + E + K Sbjct: 576 LRDKKGEV--LYTLAMVEDITERKQAMEALRQSEARYRAIVEDQTELICRFKTDGTFTFV 633 Query: 228 QSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 R + D +++ L+ E+ + + + Sbjct: 634 NDAYCRYFNKQRSELIGYRFKPQIPEIDQEFVNQQFKTLSVEKPIVTYEHRVILPDNEIR 693 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 ++ + +N E+ + + Sbjct: 694 WQQWTERVMFDNEVNIVEFQGVGRDITPLKKAEAE 728 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 11/156 (7%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L + D I N+EG N A K+ G+ E++ + + + T Sbjct: 25 LRISDDLFGIWNKEGYWQPLNPAWEKVLGWTEEELRSHTSWELIHPDDRDRTIAHFTSTE 84 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + +E ++ L + + Y +I+E K + KL + Sbjct: 85 A------VECEHRLRHQDGSYRWLAWKLIPVEDGRLY-GVGKNITETKHTEAKLKERIEF 137 Query: 578 AEKESSHKSDFL----ARVSHEIRTPLTAIIGFSEV 609 + +S F+ + H I+ L I F E Sbjct: 138 EQLITSLSHQFIQLSSDGIEHAIKHTLEKIGKFCEC 173 >gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 837 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 215/643 (33%), Gaps = 36/643 (5%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVS 241 R + + ++ L + + F L V Sbjct: 61 RQARQRERQDRALRESESRYRSLFMGSLDALVLASDDGRCFCANPAAEALFGLTEAEIVQ 120 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-- 299 + DD + + + E F + + ++ + Sbjct: 121 AGRAGLFDPDDPRLPRLWQSRAATGQARGEV-RFRRKTGELFEAEVSVSACEDFHGQPCF 179 Query: 300 -FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV 357 + ++ ++S + AN F + Y Sbjct: 180 CLALRDISARKHTEEALQKEIQRRRALMEVSNDGIAIFSQDHRILEANRRFAAMLGYPPE 239 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 T L + + D T I + + + Sbjct: 240 AM--------TSLSSWDFEAALTEDQIRSAFRDFTHINQTFETRHRRRDG---TVYDAEV 288 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILS 476 + + I + D + + ++ + S+ + + + +R+ +L Sbjct: 289 SASGARIGDERLIITICRDITDRKRTEERLRQSEERFRSLFDNVETVAVQGYDRDRNVLY 348 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A L+GY E+ L + + + + + S ++ Sbjct: 349 WNPASEALYGYSREEALGQKLETLIIPPAMRPYVVEDIRRWIEEGRPIPAG-ELRLSRQD 407 Query: 536 EKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + S D++E + + +L +K A + K++FLA + Sbjct: 408 GSEVPVFSSHVLQQTGSGDCELFCLDIDLTETEAMRKELIASKDAAVAANRAKTEFLANM 467 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL I G +++ + EY +S + +++D+LD+SKIE+ Sbjct: 468 SHEIRTPLNGIYGMLQLLATTS----PDDEQQEYVTAALKSAKRLSSLLSDILDLSKIEA 523 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 K+++ + E V + L A EK + I+ S + IP ++ D V+QI N+ Sbjct: 524 NKLDICRKAFPFQELVQSLKDIFVLSAREKALRIKFSVEDGIPGHLVGDEIRVRQILFNL 583 Query: 712 LSNAIHFTPSGGQIIISTTH---TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766 + NAI FT +GG + + +++ V + V+DTG+G+ ++ +PF Q S Sbjct: 584 IGNAIKFTETGG-VAVKACLLPESADGRVRILFSVKDTGIGIREDKVHYVFEPFAQADGS 642 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +G GLGL + K +V+ G I S GT I + P Sbjct: 643 YIREQQGAGLGLTIVKRVVEMLDGILCIDSKFGSGTTISVALP 685 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 34/381 (8%), Positives = 94/381 (24%), Gaps = 26/381 (6%) Query: 85 FTWNIDA------HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 F ++DA G + G +++ + D + Sbjct: 84 FMGSLDALVLASDDGRCFCANPAAEALFGLTEAEIVQAGRAGLFDPDDP-RLPRLWQSRA 142 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALG 197 G+ G + ++A +F G F + + Sbjct: 143 ATGQARGEVRFRRKTGELFEAEVSVSAC------EDFHGQPCFCLALRDISARKHTEEAL 196 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT--EYYAHKDDV 253 ++ ++ L E+ ++ + + I ++SL+ ++ A + Sbjct: 197 QKEIQRRRALMEVSNDGIAIFSQDHRILEANRRFAAMLGYPPEAMTSLSSWDFEAALTED 256 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + T + + + + + + Sbjct: 257 QIRSAFRDFTHINQTFETRHRRRDGTVYDAEVSASGARIGDERLIITICRDITDRKRTEE 316 Query: 314 YFDEGENLTPETVDKC-PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + E D + Y + Y NP+ L Y + + L TL+ Sbjct: 317 RLRQSEERFRSLFDNVETVAVQGYDRDRNVLYWNPASEALYGYSREEALGQK--LETLII 374 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P + + R A + + + + + + Sbjct: 375 PPAMRPYVVED---IRRWIEEGRPIPAGELRLSRQDGSEVPVFSSHVLQQTGSGD-CELF 430 Query: 432 GIEPEDVDTRINKRKMEIEVM 452 ++ + +T ++++ Sbjct: 431 CLDIDLTETEAMRKELIASKD 451 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 29/302 (9%), Positives = 74/302 (24%), Gaps = 23/302 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTL 149 + E + +G M + D L + I + +T Sbjct: 220 DHRILEANRRFAAMLGYPPEAMTSLSSWDFEAALT---EDQIRSAFRDFTHINQTFETRH 276 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT + + I + I ++ +++F L + Sbjct: 277 RRRDGTVYDAEVSASGARIGDERLIIT------ICRDITDRKRTEERLRQSEERFRSLFD 330 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + ++ +P ++ + + + ++ Sbjct: 331 NVETVAVQGYDRDRNVLYWNPASEALYGYS---------REEALGQKLETLIIPPAMRPY 381 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 ++ I + + + E + SH + S + T + Sbjct: 382 VVEDIRRWIEEGRPIPAGELRLSRQDGSEVPVFSSHVLQQTGSGDCELFCLDIDLTETEA 441 Query: 330 PIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + S AN + FL ++ + G+ LL D Sbjct: 442 MRKELIASKDAAVAANRAKTEFLANMSHEIRTPLNGIYGMLQLLATTSPDDEQQEYVTAA 501 Query: 387 YR 388 + Sbjct: 502 LK 503 Score = 38.1 bits (87), Expect = 7.0, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 36/139 (25%), Gaps = 8/139 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT-WYGK 146 D + + G + +G +L + + P I ++ G+ Sbjct: 341 DRDRNVLYWNPASEALYGYSREEALGQKLETLIIPPAMRPYVVEDIRRWIEEGRPIPAGE 400 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L +G+ VP+ + + + + + F + R Sbjct: 401 LRLSRQDGS--EVPVFSSHVLQQTGSGDCE---LFCLDIDLTETEAMRKELIASKDAAVA 455 Query: 207 LHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 456 ANRAKTEFLANMSHEIRTP 474 >gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 944 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 110/510 (21%), Positives = 204/510 (40%), Gaps = 39/510 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 D + + V G + N + + ++ + GL LL Sbjct: 15 RVADLASSAHAAIFEHSRDGVLVLDAGQRIVEVNRAAERIFGPRTR-LVGQPVGL--LLP 71 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + A L ++ + A + Sbjct: 72 GWRPPEPRAPADAALRETE----------LAGHRPGGSGPAHYLRVVTLPLPGEGDGGWV 121 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + + +++ + I I R+ +LS N ++LFGY + Sbjct: 122 LQLHDMTARLEVEASLRQQKEFFEAVVINSPVAIITITRQFRVLSWNPEATRLFGYSPAE 181 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 L K + P+V+ + R L +T K+ ++ + + + Sbjct: 182 ALGKHIFELVATE-PTVLPEAEQASREVVQRGRLRSVTRRVRKDGSVVDVELRALPVSVG 240 Query: 552 S---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + HDI++ L A+K AE + KS FLA +SHEIRTP+ AIIG + Sbjct: 241 GRQLGFIAIYHDITD-------LERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTG 293 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ ++ ++ I +S +L ++ND+LD SKIE+G+ P L + V Sbjct: 294 LLLDRAL----TEEQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCV 349 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII 726 + L+ + A+EK + + A +P+ ++ D ++Q+ LN++ NA+ FT GG + Sbjct: 350 ESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVS 409 Query: 727 IS------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + T ++ E+ V+DTG+G+ + +PF Q+ S R GTGLGL + Sbjct: 410 VEGLALGGTEGAADWELTFSVQDTGLGIPDDRRTGLFQPFNQLDASVSRRFGGTGLGLAI 469 Query: 781 AKAMVDANMGKFYIFST--PAKGTLIEIIF 808 +K +V+A G ++ S P +GT Sbjct: 470 SKRLVEAMGGTIWVESEGVPGQGTTFRFTL 499 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 57/243 (23%), Gaps = 20/243 (8%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V + + A + + + + V + IF P R+ + L Sbjct: 15 RVADLASSAHAAIFEHSRDGVLVLDAGQRIVEVNRAAERIFG-----PRTRLVGQPVGLL 69 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L +E L + + + + + Sbjct: 70 LPGWRPPEPRAPADAALRETE---LAGHRPGGSGPAHYLRVVTLPLPGEGDGGWVLQLHD 126 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI- 362 + A + + V P+ + + NP L Y + + Sbjct: 127 MTARLEVEASLRQQKEFFEAVVINSPVAIITITRQFRVLSWNPEATRLFGYSPAEALGKH 186 Query: 363 ----AGGLSTLLDAPKLSDNNAIKPVMLY------RSDRTCIAASARLHTIQWNRENSLA 412 T+L + + ++ L R D + + R + Sbjct: 187 IFELVATEPTVLPEAEQASREVVQRGRLRSVTRRVRKDGSVVDVELRALPVSVGGRQLGF 246 Query: 413 MTF 415 + Sbjct: 247 IAI 249 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 48/484 (9%), Positives = 116/484 (23%), Gaps = 43/484 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKT 147 + + E + G + +G + ++ + ++++R T Sbjct: 160 RQFRVLSWNPEATRLFGYSPAEALGKHIFELVATEPTVLPEAEQASREVVQRGR-LRSVT 218 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ V ++L ALP+ R+ GF I H R + ++ S Sbjct: 219 RRVRKDGS--VVDVELRALPVSVGGRQL-GF--IAIYHDITDLERARKAAEAANQAKSLF 273 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 I + + + L T +L + Sbjct: 274 LATMSHEIRT--PMNAIIGMTGLLLDRALTEEQRDFVATIRQSSEALLTLLNDVLDFSKI 331 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E + + + + E L P L + + + Sbjct: 332 EAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVLL 391 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL-STLLDAPKLSDNNAIKPVML 386 ++ + L L + D E+ + T L P +P Sbjct: 392 NLVGNALKFTEHGGAVVSVEGLALGGTEGAADWELTFSVQDTGLGIPDDRRTGLFQPFNQ 451 Query: 387 ------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 R T + + ++ + + F + Sbjct: 452 LDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFTLRAQAAPQAYAVQ 511 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV- 499 ++ + + +++ N +L G ++ P Sbjct: 512 PRQEQGLLQGRR------------VLVVDD-------NALFRRLLGRQLQAWGLVPVESA 552 Query: 500 -----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + L + L T + +E + L L ++ + Sbjct: 553 SGMDALAQLEAGASFDAVLIDHHMPGLDGTALAERIRQREETRALPLVLVSTPGRRGNPP 612 Query: 555 SLTM 558 Sbjct: 613 EGLF 616 Score = 45.4 bits (106), Expect = 0.044, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 57/215 (26%), Gaps = 19/215 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA + E++ + G +++G + + D R+ G Sbjct: 38 LDAGQRIVEVNRAAERIFGPRT-RLVGQPVGLLLPGWRPPEPRAPADAALRETELAGH-- 94 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G+ + + LP+ E G +H + A ++ + F + Sbjct: 95 --RPGGSGPAHYLRVVTLPL---PGEGDG-GWVLQLHDMTARLEVEASLRQQKEFFEAVV 148 Query: 209 EIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 S E +F + ++ + + + E Sbjct: 149 INSPVAIITITRQFRVLSWNPEATRLFGYSPAEALGKHIFELVATEPTVLPEAEQASREV 208 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + ++D +++ G Q Sbjct: 209 VQRGRLRSVTRRVRKDGSVVDVELRALPVSVGGRQ 243 >gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM573] Length = 1325 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 12/375 (3%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ + IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557 + + Q E + ++ + + + Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N + Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y I+ S +L I+ND+LD SKIE+GK+N+ SLD+ + +++ L Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISL 695 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I +IP ++ D + Q+ +N+ NA+ FT G +I+IS E Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQLNE 754 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ G+ Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814 Query: 793 YIFSTPAKGTLIEII 807 + S KG+ E Sbjct: 815 SVHSEEGKGSTFEFS 829 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + E L+ L + S + E L Sbjct: 414 LQVNHQPIGLLELGTVGMLSMQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473 Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E +D P P + ++G N FL L + D I S Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + I + + + ++ + GI + + Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586 Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475 + ++++ ++ L S + I ++ + Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646 Query: 476 STNRAVSKLFGYPVEDILRKPFT 498 N + L G + + Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669 Score = 45.4 bits (106), Expect = 0.040, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144 + + A+G ++ + + +G Y +IG ++ + +L ++Q++ Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +L G + + A+ R + +G GI+ + + Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624 >gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis R1] Length = 772 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 123/506 (24%), Positives = 222/506 (43%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y D + ++ +++ + + + +M + Sbjct: 284 VYWSRAMYEMLGYVPQDALLSISQITAIINPTDTNFFDLAQELM----SGEKKHIDINI- 338 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M F + P GI + + R + +++ +E Sbjct: 339 PMRHADGHYIWMRFRAEVTEGEEP---HLVGISFDISEQRQLAEQTAQADLRIRDAIENI 395 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E ++ YL + Sbjct: 396 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIQRATVEAMARPAISEYLLKEDGTG- 454 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ T DISE KQ++ K Sbjct: 455 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCTGTDISELKQQQEKFKNSEKSLFSF 507 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 508 IQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPLNAILGF 567 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ FGPLG+ RY EY I SG +L ++ND+LD+SKIE+G+ L + + L Sbjct: 568 SDIMLQSTFGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNIDLGP 627 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SEA+ + A EK++ + + A + D R+++QI LN++SNA+ FTPSGG I Sbjct: 628 IISEAVRTLTPQAQEKKVSVTENIAPKL-HAEVDCRAIRQIFLNLISNAVKFTPSGGNID 686 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +I +++DTGVG+ ++K +PF Q+ N G+GLGL +++++V Sbjct: 687 V-CAFQKENNLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTHTGSGLGLAISRSLVK 745 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S KGT + I P+ Sbjct: 746 LHKGKLEITSKEEKGTTVTITMPIQQ 771 >gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 585 Score = 364 bits (935), Expect = 3e-98, Method: Composition-based stats. Identities = 103/368 (27%), Positives = 178/368 (48%), Gaps = 26/368 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E++ +L +++E G+ +I+R G I NRA ++F D L +P+ Sbjct: 235 KAQEMQTDRLHTLIENVGSGLILIDRRGYINLINRAFKEIFHIRPVDYLYRPYAEAFAH- 293 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 + + EI + + +++ L E K + L HDI+ Sbjct: 294 --KEIVQLVNEIFMKET-KVRKQMLLTIGIERKHFEVYGAPIIGTNDEWKGIVLVFHDIT 350 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + + DF+A VSHE++TP+T+I GF+E + + G + + R Sbjct: 351 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFAETLLD---GAMKDER 393 Query: 623 YIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +E + + I + + +V DLLD+SKIE + LH E V L + E + Q A E Sbjct: 394 TLEHFLSIIWKESERLQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAEE 453 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I R A +I + D +KQI +N+++NA+ +TP GGQ+ + E + + V Sbjct: 454 KGIDFRMHAAKSI-YMEGDANRLKQIFINLITNALTYTPKGGQVEVIAEEQEEETL-VHV 511 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S KG Sbjct: 512 KDTGIGIEEAEIPRIFERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKG 571 Query: 802 TLIEIIFP 809 T + FP Sbjct: 572 TTFTVHFP 579 >gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 599 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 97/410 (23%), Positives = 173/410 (42%), Gaps = 16/410 (3%) Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + W P + P G+ R + + I++ Sbjct: 189 LPWAASMLFVTGLSPIPFVDPTPVAFALGGLAFTVAMQRYRALDLLPAARE--RIVDQMP 246 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 D I +++ I+ N A + D+L K + Sbjct: 247 DAIIVLDMHDRIIDLNPAAQAILSAT-TDVLGKSLARVAPPWLIEQVRDRYEGQFE---- 301 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + LR + S + DI+ +KQ L AK+ AE Sbjct: 302 -----VQQTGETGTTTYDLRCTTLRDRDGSPAGRIFVLRDITLFKQAAQALQEAKEAAEA 356 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 S KS FL+ +SHE+RTPLTAI+G+SE ++ + + + I +G +L + Sbjct: 357 ASQAKSAFLSMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSD-LDRIITAGRHLLTL 415 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +ND+LD +++E+ + +H EPV + ++E + +Q A + + I + ++P +LAD Sbjct: 416 INDILDYARLEANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDLPPVLAD 475 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ LN++ NA FT G +I + ++ E+ + V DTG+G+ +L+ KPF Sbjct: 476 PVRLRQVLLNLVGNACKFTGQG-EIRVHCYRSTTAEIQIDVSDTGIGIAADQLQHLFKPF 534 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q+ N R GTGLGL + + + G + S P +G+ + P+ Sbjct: 535 VQVDNGPTRRYGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTFSVRLPI 584 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 2/151 (1%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 D VD+ P V + NP+ + + + ++ Sbjct: 229 RALDLLPAARERIVDQMPDAIIVLDMHDRIIDLNPAAQAILSATTDVLGKSLARVAPPWL 288 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQ 430 ++ D + + + R T++ + + + + + Q Sbjct: 289 IEQVRDRYEGQFEVQQTGETGTTTYDLRCTTLRDRDGSPAGRIFVLRDITLFKQAAQALQ 348 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 E + ++ + + +L + L A Sbjct: 349 EAKEAAEAASQAKSAFLSMMSHELRTPLTAI 379 Score = 38.1 bits (87), Expect = 5.9, Method: Composition-based stats. Identities = 22/231 (9%), Positives = 68/231 (29%), Gaps = 13/231 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D H + +++ + ++G L V+ I+ ++ + G+ Sbjct: 252 LDMHDRIIDLNPAAQAILSATTD-VLGKSLARVAPPWLIEQV---------RDRYEGQ-F 300 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G DL + R+ +G R F ++ + + + Sbjct: 301 EVQQTGETGTTTYDLRCTTLRDRDGSPAG-RIF-VLRDITLFKQAAQALQEAKEAAEAAS 358 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + K S+ + ++ + + + D L + + Sbjct: 359 QAKSAFLSMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSDLDRIITAGRHLLTLIND 418 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + + + TL N + + L+ + +++ + Sbjct: 419 ILDYARLEANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDL 469 >gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195] gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678] Length = 1238 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + Y + L+ + E Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658 Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + R + + T DI+ K + L AK+ AE Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNSLKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G+ + + Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + +H DD ++ E+Y L + + N + Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + L + + + + + Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii HTCC2633] Length = 849 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 132/651 (20%), Positives = 243/651 (37%), Gaps = 60/651 (9%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 D A+ + + L+ + + +N + + Sbjct: 198 RDEVAMLTDAEGRLLALNP--DTPFTGAPFAAERLGLDPEAVSEMSRNGGAMRGAHLGED 255 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYL--SHRN 307 +L + SL N F + L Sbjct: 256 ARILGAAAINGAPLQALSLGPDGIDRQAWNSTLLFHLLLFLAPLGTAGALSIVLRNQMGR 315 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGL 366 A + E ++ + + SF L + + Sbjct: 316 LGDTQARLHDSEGRLHLAIEGARCGVWDWDLDTDEVVLTDSFAQLIGRARGESLSGP--- 372 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L +P + A L + + + P Sbjct: 373 -----ELLLLLGKEDRPKVRAALRGAANAQDVDLEV------RAAGLPVWLQLRGRLLPH 421 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 G+ + + + + ++ +L + LE+ S+ + + G ++ NR FG Sbjct: 422 TRRIIGVAIDITERKGAQARVAAAESRLRAALESMSESFVLWDARGRLVLWNRKFRDFFG 481 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + D+ EQ + S D + + + + + + Sbjct: 482 FNEPDLR---IGSSYEQVEAAAARAIKAAHASEDGQDDYDLEL----NDGRWIHY---AE 531 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKI----------------------------A 578 + DI+ K ++ L + A Sbjct: 532 RRTADGGLVSVGADITALKDQQRALKDNDREMRRTVENLRRSQERVQELAANYEQEKIRA 591 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E+ + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY +Y I SG +L Sbjct: 592 EEANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLL 651 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD+SKIE+GKM L EP+ E + + + +++ A EK I + + +P I Sbjct: 652 SLINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIELTVE-GSELPEIT 710 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD R++KQ+ LN++SNA+ FTP GG++ + + + V+L+V DTG+G++ +L++ + Sbjct: 711 ADPRALKQVILNLMSNAVKFTPEGGKVKLR-GFQAADGVVLQVSDTGIGISEDDLQRVGR 769 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF QI + + +G+GLGL L+K++++ + G I S +GT + P Sbjct: 770 PFEQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLP 820 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 35/385 (9%), Positives = 88/385 (22%), Gaps = 31/385 (8%) Query: 89 IDAHGYLKEISEE--------LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 DA G L ++ + + +G + M + + Sbjct: 205 TDAEGRLLALNPDTPFTGAPFAAERLGLDPEAVSEMSRNGGAMRGAHLGEDARILGAAAI 264 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN--DPRALGK 198 N + +G + + IV N++ D +A Sbjct: 265 NGAPLQALSLGPDGIDRQAWNSTLLFHLLLFLAPLGTAGALSIVLRNQMGRLGDTQARLH 324 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + E + D L + + SL+ + Sbjct: 325 DSEGRLHLAIEGARCGVWDWDLDTDEVVLTDSFAQLIGRARGESLSGPELLLLLGKEDRP 384 Query: 259 YPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ + D + L + + + A Sbjct: 385 KVRAALRGAANAQDVDLEVRAAGLPVWLQLRGRLLPHTRRIIGVAIDITERKGAQARVAA 444 Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E+ ++ F ++ G L N F + D + ++ Sbjct: 445 AESRLRAALESMSESFVLWDARGRLVLWNRKFRDFFGFNEPDLRIGSS-------YEQVE 497 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 A + S+ L+ +W A + + + + Sbjct: 498 AAAARAIKAAHASEDGQDDYDLELNDGRW------------IHYAERRTADGGLVSVGAD 545 Query: 437 DVDTRINKRKMEIEVMQLCSILEAT 461 + +R ++ ++ +E Sbjct: 546 ITALKDQQRALKDNDREMRRTVENL 570 >gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus VM603] Length = 1325 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 12/375 (3%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ + IL+AT + + ++ G L+ N +L G D++ KP Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557 + + Q E + ++ + + + Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E K+ + +L AK A+ S K DFLA +SHEIRTP+ AI+G + + N + Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + +Y I+ S +L I+ND+LD SKIE+GK+N+ SLD+ + +++ L Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISL 695 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I +IP ++ D + Q+ +N+ NA+ FT G +I+IS E Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQINE 754 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+DTG+G+ +L F Q NS + GTGLGL ++K +V+ G+ Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814 Query: 793 YIFSTPAKGTLIEII 807 + S KG+ E Sbjct: 815 SVHSEEGKGSTFEFS 829 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%) Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + E L+ L + S + E L Sbjct: 414 LQVNHQPIGLLELGTVGMLSMQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473 Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E +D P P + ++G N FL L + D I S Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + I + + + ++ + GI + + Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586 Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475 + ++++ ++ L S + I ++ + Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646 Query: 476 STNRAVSKLFGYPVEDILRKPFT 498 N + L G + + Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669 Score = 45.4 bits (106), Expect = 0.040, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144 + + A+G ++ + + +G Y +IG ++ + +L ++Q++ Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +L G + + A+ R + +G GI+ + + Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624 >gi|322419914|ref|YP_004199137.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320126301|gb|ADW13861.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 869 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 101/748 (13%), Positives = 228/748 (30%), Gaps = 41/748 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147 DA G ++ ++ + + G ++ G + + + + + + W G+ Sbjct: 142 TDAVGNIEFVNPKFTEVTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAGREWRGEM 201 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G A PI + S F + + + KFS Sbjct: 202 VNRKKNGEVY--WESAAISPILDIEGKISNF--IAVTEDITAHKRAEEALRESENKFSKA 257 Query: 208 HEIKKGHSSVEK-EKYDIFSQQSPPPHLRM--KNKVSSLTEYY----AHKDDVLKTEKYP 260 + ++ + +++V T + DD + + Sbjct: 258 FQAAPELFTISSLAEGRYIEVNEAFERTLQYSRDEVVGHTPREFGIWVNPDDRDQVVRML 317 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ E Sbjct: 318 REQRRVRDFETSFRSKAGTVIVGLLSAEIIEIKGEECLVAITKDITARKLSEEALRFSEA 377 Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 PI + NP+ Y + ++E L L D+ Sbjct: 378 RYRALFRDNPIMIVTLDTELTMLAVNPTCASQLGYT-ISELEGRSVLE-LFHED---DHL 432 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A+ +L + ++ + L + ++ + + Sbjct: 433 AVTEQLLACLQDPGQVHRWQFRKVRKDGS--LIWVEEIAQGVYDLNGSLNILVCCQDVTE 490 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + ++ + + + GI + +G +L N+ + GY E++ + Sbjct: 491 RKRTEEALQESEERFRATFNQAAVGIGHVGPDGRVLLVNQKYCDIVGYSEEELKARKVQE 550 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + + +L + K+ + + + + + + Sbjct: 551 ITHPDDLETSMIHFQHMLE-GTLGSYSLEKRYIRKDGSTVWVDLTVSTVVDAGGKLKFAV 609 Query: 556 LTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + DI+E KQ + +L E + F +H++R PL I G+ + Sbjct: 610 GVVADITERKQAEEKIRILNAELEARAAELELANQELDAFNYTSAHDLRQPLNTINGYCQ 669 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 IK +R G + + + Y + + ++ LL+ S++ ++ H E V L Sbjct: 670 EIK-ERCGDKLDEQCLRYLDETYNGTLRMNRLIEALLNFSRV--ARIEPHRETVDLFSMA 726 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 +E ++L E+R+ +R + R+ D ++ + N++ NA +T + +I Sbjct: 727 NEIAMELKLADPERRVTLRI---ADGIRVDGDATLLRVVLDNLIGNAWKYTSKQEEGVIE 783 Query: 729 TTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T + + VRD G+G E +K PF ++ S G G+GL + ++ Sbjct: 784 LGMTEIDGKPAFFVRDNGIGFDMSEADKLFLPFHRL--SGAEIYRGFGIGLATVERIIRR 841 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + G+ + P G P S Sbjct: 842 HGGRVWAEGEPGNGACFYFTLPADKVSA 869 Score = 128 bits (321), Expect = 4e-27, Method: Composition-based stats. Identities = 52/507 (10%), Positives = 139/507 (27%), Gaps = 46/507 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + + G A +++G ++ I P L ++ GKT Sbjct: 40 VDMNRKVLFANLVAAAIFGCKAQELLGKQV-----DFLIQPGQITELKLASRD---GKTV 91 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + ++ A + F ++ ++L + Sbjct: 92 SVEV----WAIEMEWNA----DKAH-------FIALNDITDRKMKEQELRKLYRAVLQSP 136 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 I +V + + + +V+ L + + Sbjct: 137 SIVMITDAVGN--IEFVNPKFTEVTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAG 194 Query: 269 LPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLT 322 + + N Y + + + + +++ E EN Sbjct: 195 REWRGEMVNRKKNGEVYWESAAISPILDIEGKISNFIAVTEDITAHKRAEEALRESENKF 254 Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + P F + S G N +F +Y + + + P D Sbjct: 255 SKAFQAAPELFTISSLAEGRYIEVNEAFERTLQYSRDEVVGHTPREFGIWVNPDDRD--- 311 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + V + R R + + + + I + Sbjct: 312 -QVVRMLREQRRVRDFETSFR--SKAGTVIVGLLSAEIIEIKGEECLV---AITKDITAR 365 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++++ + + ++ I ++ E +L+ N + GY + ++ + Sbjct: 366 KLSEEALRFSEARYRALFRDNPIMIVTLDTELTMLAVNPTCASQLGYTISELEGRSVLEL 425 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-- 558 ++ + L L D Q K+ L+ + I + + + + Sbjct: 426 FHEDDHLAVTEQLLACL-QDPGQVHRWQFRKVRKDGSLIWVEEIAQGVYDLNGSLNILVC 484 Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSH 584 D++E K+ + L +++ + Sbjct: 485 CQDVTERKRTEEALQESEERFRATFNQ 511 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 42/399 (10%), Positives = 112/399 (28%), Gaps = 24/399 (6%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SEN F FT + A G E++E +T+ +++G + ++ D Sbjct: 249 ESENKFSKAFQAAPELFTISSLAEGRYIEVNEAFERTLQYSRDEVVGHTPREFGIWVNPD 308 Query: 129 PNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + + +L+ Q +T+ GT + + + I I Sbjct: 309 DRDQVVRMLREQRRVRDFETSFRSKAGTVIVGLLSAEIIEIKGEE------CLVAITKDI 362 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLT 244 + + ++ L + + + + Sbjct: 363 TARKLSEEALRFSEARYRALFRDNPIMIVTLDTELTMLAVNPTCASQLGYTISELEGRSV 422 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEY 302 H+DD L + L ++ + F + + + ++ + + + Sbjct: 423 LELFHEDDHLAVTEQLLACLQDPGQVHRWQFRKVRKDGSLIWVEEIAQGVYDLNGSLNIL 482 Query: 303 L---SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358 + E E T ++ + V G + N + + Y + Sbjct: 483 VCCQDVTERKRTEEALQESEERFRATFNQAAVGIGHVGPDGRVLLVNQKYCDIVGYSEEE 542 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIP 417 + + D+ + + T + S I+ + + + Sbjct: 543 L------KARKVQEITHPDDLETSMIHFQHMLEGTLGSYSLEKRYIRKDGST-VWVDLTV 595 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + G+ + + + + K+ I +L + Sbjct: 596 STVVDAGGKLKFAVGVVADITERKQAEEKIRILNAELEA 634 Score = 100 bits (250), Expect = 9e-19, Method: Composition-based stats. Identities = 32/294 (10%), Positives = 82/294 (27%), Gaps = 38/294 (12%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363 + + P + + +AN + K+ + + Sbjct: 9 MAQLELSNQKLQACLSRFQSITTNSPHGILIVDMNRKVLFANLVAAAIFGCKAQELLGK- 67 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L I + L D ++ ++WN + + + Sbjct: 68 -------QVDFLIQPGQITELKLASRDGKTVSVEVWAIEMEWNADKAHFIAL-------- 112 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + D ++ ++++ ++L++ + I + G I N ++ Sbjct: 113 -----------NDITDRKMKEQELRK---LYRAVLQS-PSIVMITDAVGNIEFVNPKFTE 157 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + GY V ++ K + TP ++ L E + + K ++ Sbjct: 158 VTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAGREWRG--EMVNRKKNGEVYWESA 215 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 I + + DI+ K+ + L ++ K + S Sbjct: 216 AISPILDIEGKISNFIAVTEDITAHKRAEEALRESENKFSKAFQAAPELFTISS 269 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 61/159 (38%), Gaps = 26/159 (16%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +K++ + + SI + GI I++ +L N + +FG +++L K ++ Sbjct: 17 QKLQACLSRFQSITTNSPHGILIVDMNRKVLFANLVAAAIFGCKAQELLGKQVDFLIQPG 76 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDIS 562 + ++++ K +S+ + ++ + + ++DI+ Sbjct: 77 QIT--------------------ELKLASRDGKTVSVEVWAIEMEWNADKAHFIALNDIT 116 Query: 563 EWKQEKNKLSHAKKIAEK--ESSHKSDFLARVSHEIRTP 599 + K ++ +L + + +D + + E P Sbjct: 117 DRKMKEQELRKLYRAVLQSPSIVMITDAVGNI--EFVNP 153 >gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 573 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 107/424 (25%), Positives = 195/424 (45%), Gaps = 22/424 (5%) Query: 405 WNRENSLAMTFIPFEKANQ---------FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 W + + F + + E + I + + Q Sbjct: 149 WVGGRLVGVVFHEHCGELRQWTVDEENFAGSIADFVSLAMETRERNIAQEALRKSEAQFR 208 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510 +I E +S GI +++ + I+ N A+ ++ GY E++ K FT ++ Q V Sbjct: 209 AIFELSSIGIGLVDMKAQIVDANPALCQMLGYQREELCGKRFTDYISQQRGDVERYKQLM 268 Query: 511 -HYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWK 565 + + LE ++ +L+ + +I + + DI++ K Sbjct: 269 TEICIDAQQHHEKPHLEIERAFLHRDGRLVWTRLSVSVIPGSYGEPEYFLAIIDDITDRK 328 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + KL ++ AE S KS+FLA +SHE+RTPL AI+G S++++ + G L N + E Sbjct: 329 QTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NEKQQE 387 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I SG +L ++ND+LD+SK+E+GK L P+ + + ++ + V+ A K + Sbjct: 388 YISCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLK 447 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +AD R +KQ+ LN+L+NAI FT G ++ ++ + + DTG Sbjct: 448 LTQEIDPEASICIADDRRIKQMLLNLLTNAIKFTSVG-EVSLTVKRVPEG-INFIISDTG 505 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + + +PF Q+ + + EGTGLGL L + + + G + ST G+ Sbjct: 506 IGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFT 565 Query: 806 IIFP 809 + P Sbjct: 566 LFLP 569 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 36/321 (11%), Positives = 78/321 (24%), Gaps = 31/321 (9%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF--TWN--------IDAHGYLKE 97 + ++ NF + VS N +F + +D + + Sbjct: 170 TVDEENFAGSIADFVSLAMETRERNIAQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVD 229 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---------HIGDLLKRQNTWYGKTT 148 + L + +G ++ G R D D + + Sbjct: 230 ANPALCQMLGYQREELCGKRFTDYISQQRGDVERYKQLMTEICIDAQQHHEKPHLEIERA 289 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G ++ + ++ +P E F I+ + Sbjct: 290 FLHRDGRLVWTRLSVSVIP--GSYGEPEYF--LAIIDDITDRKQTEMKLRASQAAAEAGS 345 Query: 209 EIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 K + + L + V SL E + + LL Sbjct: 346 RAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQEYISCIYSSGEHLLALIND 405 Query: 268 SL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L ++E F L T+++ + L+ P S + Sbjct: 406 ILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEASICIADDRR 465 Query: 321 LTPETVDKCPIPFFVYSHGNL 341 + ++ S G + Sbjct: 466 IKQMLLNLLTNAIKFTSVGEV 486 >gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185] Length = 1238 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + Y + L+ + E Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658 Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + R + + T DI+ K + L AK+ AE Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G+ + + Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + +H DD ++ E+Y L + + N + Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + L + + + + + Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator [Pseudomonas mendocina NK-01] gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator [Pseudomonas mendocina NK-01] Length = 1230 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 112/642 (17%), Positives = 222/642 (34%), Gaps = 31/642 (4%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 ++ + + +A + L F + S + +F Sbjct: 253 LLRYRHMSHQLKASEQHLRSIFDTALDAIITVDHTGTLRSANRAVLRLFGWTPEELVGLH 312 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + + + V + LT + Sbjct: 313 MSTLVPARLIDKVEGLVADYLRTGQLTMMSGEQELVCLTREGEEKPVRISVGITHAGSRP 372 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTK 353 + E + P F + + + + LT Sbjct: 373 LFVVFVADISERQHMEMALRRSEQQYRSLISNIPGVSFRCLLDRNWSMLFISDAVEKLTG 432 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 Y + D I ++ L V+ + RL + + Sbjct: 433 YSADDFISRRCSIADLYHPDDYQPTA--DQVVAAIEEGRNYTVEYRLFD---REGHEHWI 487 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 ++ +G+ + +T+ + E +V +I +A + + +G Sbjct: 488 WESGSAVCDEQGVPRWIDGVLIDQTETKRRNAEYEGKVT---AISKAM--ALVEFDLDGN 542 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 IL N LFGY E+++ +F + Y L Q Sbjct: 543 ILEINDNALALFGYDREEVVGHHHAMFCAPE-LVASDAYREVWAELRAGQFRTGEYRRLA 601 Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K + + ++ + + D++ + + L A+ AE ++ +S FL Sbjct: 602 KGGREVWIQASYNPILDTDGKPFKVVKLATDLTPRRVMELDLRAARDRAEAAAAARSSFL 661 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ AIIGF++++ P + + + S +L ++ND+LD +K Sbjct: 662 ANMSHEIRTPMNAIIGFTDLLLETPLSP----DQRRHLSTVQHSSRSLLGLLNDILDTAK 717 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 ++ G + L SL E + ++ +L A K + + + + + D ++Q+ Sbjct: 718 LDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFSGDPLRLQQVL 777 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+L NA+ FT G ++ + + + L V+DTG+G+ LEK +PF Q S Sbjct: 778 TNLLGNAVKFTQQG-EVRLKVSGEP-GAMRLAVKDTGIGIAADRLEKIFEPFAQADASMS 835 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLG +++ +V+ G+ + ST +G+ + PL Sbjct: 836 RRFGGTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELPL 877 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 42/370 (11%), Positives = 103/370 (27%), Gaps = 21/370 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQN--TWYG 145 +D G L+ + + + G +++G+ + + ID + D L+ G Sbjct: 284 VDHTGTLRSANRAVLRLFGWTPEELVGLHMSTLVPARLIDKVEGLVADYLRTGQLTMMSG 343 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L + P+ ++ ++ +R V +R ++++ Sbjct: 344 EQELVCLTREGEEKPVRISVGITHAGSRPL----FVVFVADISERQHMEMALRRSEQQYR 399 Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYA---HKDDVLKTEK 258 L G S + + + L + S A H DD T Sbjct: 400 SLISNIPGVSFRCLLDRNWSMLFISDAVEKLTGYSADDFISRRCSIADLYHPDDYQPTAD 459 Query: 259 YPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + EE + + +++ + + + + + + Sbjct: 460 QVVAAIEEGRNYTVEYRLFDREGHEHWIWESGSAVCDEQGVPRWIDGVLIDQTETKRRNA 519 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + K GN+ N + L L Y + + G + AP+L Sbjct: 520 EYEGKVTAISKAMALVEFDLDGNILEINDNALALFGYDREEVV---GHHHAMFCAPELVA 576 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ++A + V R + + + + + + Sbjct: 577 SDAYREVWAELRAGQFRTGEYRRLA---KGGREVWIQASYNPILDTDGKPFKVVKLATDL 633 Query: 438 VDTRINKRKM 447 R+ + + Sbjct: 634 TPRRVMELDL 643 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 35/331 (10%), Positives = 79/331 (23%), Gaps = 21/331 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKT 147 D G + EI++ G +++G + D + L+ G+ Sbjct: 538 DLDGNILEINDNALALFGYDREEVVGHHHAMFCAPELVASDAYREVWAELRAGQFRTGEY 597 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G V I + PI + + F +V + R + L Sbjct: 598 RRLAKGGR--EVWIQASYNPILDTDGKP-----FKVVKLATDLTPRRVMELDLRAARDRA 650 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 SS ++ + P + + L + + S Sbjct: 651 EAAAAARSSFL---ANMSHEIRTPMNAIIGFTDLLLETPLSPDQRRHLSTVQHSSRSLLG 707 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 L + D ++ +Q +L+ ++ + + + Sbjct: 708 LLNDILDTAKLDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFS 767 Query: 328 KCPIP---FFVYSHGNLFYANPSFLLLTKYK------SVDDIEIAGGLSTLLDAPKLSDN 378 P+ GN + K + + G++ Sbjct: 768 GDPLRLQQVLTNLLGNAVKFTQQGEVRLKVSGEPGAMRLAVKDTGIGIAADRLEKIFEPF 827 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 M R T + + ++ Sbjct: 828 AQADASMSRRFGGTGLGTTISRQLVELMGGR 858 >gi|254413229|ref|ZP_05027000.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179849|gb|EDX74842.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1366 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 120/683 (17%), Positives = 240/683 (35%), Gaps = 67/683 (9%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + + + + D+ F+ +I + + + K E+ Sbjct: 467 ELRERQHIQQERDRLFNLSVDILGIVNFEGYFIDVNPAFEKILGISSDAIKAQPFIEWVH 526 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 +D + L S + + + + + + Sbjct: 527 PEDREATQAQMRKLASGITIKSFENRYCSQDGSYQWFSWTAVPFVQERLVYVVAHDITER 586 Query: 309 PSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E E D ++ G+ Y +PS +T Y++ + + L Sbjct: 587 KQAEQALQESEQRFRTVADFTYDWEYWRDPDGSFIYVSPSCQRITGYQAEEFLNDPSLLE 646 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 ++ ++ + R + + + + ++ Sbjct: 647 AII-----HPDDRQRMTKHIREQLDNPHVYSTDFRLITRTGSIRWIAHACQPVYSKDRRW 701 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + Q + D + + + Q +++E + D +A + + L N A+ ++ Sbjct: 702 LGQRASNRDISDRKQTEEALYYREQQFRALVENSPDIVARFDHQLRHLYVNPAIEQVAKC 761 Query: 488 PVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + + K + + + L + + Q +E +K K RI+ + Sbjct: 762 SAQTFIGKTNEELGMPPDKAQFWDEALRSVFTTGQEQLIEFDFPT-SKGMKFFHSRIVPE 820 Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 DI+ K+ + L AK AE + KS+FLA +SHE+RTPL I+ Sbjct: 821 LNADGTIRSVLSVTRDITAHKEIEVALQQAKDAAEVANRAKSEFLATMSHELRTPLNGIL 880 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G++++++N E N I G +L ++ND+LD SKIES K+ L L Sbjct: 881 GYTKLLQND---TNLTETQRESLNIIYHCGEHLLTLINDILDFSKIESQKLELDPSEFHL 937 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG- 722 +S SL +L A +K I + +P+ ++AD + ++Q+ +N+LSNA+ FT G Sbjct: 938 PTFLSSISSLFRLRATQKEIDFTYKLLSPLPQNVIADEKRLRQVLINLLSNAVKFTDQGS 997 Query: 723 -----GQII---------------------ISTTHTSN---------------------- 734 G + + + T N Sbjct: 998 VTFKVGYVEDVETCHGASCHGASCHGASQCVGASLTDNVTQETANVTKPARLKERDILSQ 1057 Query: 735 ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ +V DTG+G+ +L + PF Q+ + + EGTGLGL +++ +V Sbjct: 1058 SPITKIRFQVEDTGIGIDPQQLSEIFLPFHQV-SDRTHAVEGTGLGLAISQKLVQLMDST 1116 Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814 + S +G++ L D S Sbjct: 1117 IQVSSILGQGSVFWFDLELSDVS 1139 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 44/397 (11%), Positives = 101/397 (25%), Gaps = 78/397 (19%) Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG----LSTLLDAPKL- 375 ++ + G NP+ L + + L Sbjct: 13 FQALFNQALDAMAIADDQGQYVEVNPAACRLFGLSREELLGCRISDFTDLEFDFQEAWRI 72 Query: 376 --SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 L R D T A I Sbjct: 73 FLEQGQVKGEFRLRRRDGTIRETEY---------------------AATANVIPHRHLSI 111 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + + ++ +L L A GI N + + LFG Sbjct: 112 LRDITDRKQVEAELRQSEERLNLALYAAQMGIWDWNLLTNQIRWSEHHEVLFGLTPGTYD 171 Query: 494 R--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 K F + + + S + + + + + K + Sbjct: 172 GTYKTFEACIHPDDREAVKQAANR--SQLEQHEYDHEFRVVWSDGSIHWIEGKGKFIYDQ 229 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL----ARVSHEIRTPLTAI 603 + T+ DIS+ KQ + ++ E+ ++ L ++HEI Sbjct: 230 TGQAVRMLGTVIDISDRKQAETQIYRLNAELEQRVIERTQELQRTNDNLNHEI------- 282 Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 R E A ++ ++ + + ++ + + Sbjct: 283 ----------------QERQRAEAAVHLQAQQERLISAI----------AQQI---RQSL 313 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 L++ ++ ++ VQ +++I + + ++A Sbjct: 314 DLNQILNTTVTQVQQLLACDQVVIYQTHDDGTGNLVA 350 Score = 94.7 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 55/486 (11%), Positives = 132/486 (27%), Gaps = 43/486 (8%) Query: 96 KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWP 151 SE G G + L++ + +W Sbjct: 153 IRWSEHHEVLFGLTPGTYDGTYKTFEACIHPDDREAVKQAANRSQLEQHEYDHEFRVVW- 211 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ I+ IY + + R G V RL+ + + Sbjct: 212 SDGSI--HWIEGKGKFIYDQTGQ--AVRMLGTVIDISDRKQAETQIYRLNAELEQRVIER 267 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + ++ + + + A ++ ++ + S + + Sbjct: 268 TQELQRTNDNLNH--------EIQERQRAEAAVHLQAQQERLISAIAQQIRQSLDLNQIL 319 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + ++ + + + S+ E + P + Sbjct: 320 NTTVTQVQQLLACDQVVIYQTHDDGTGNLVAQALASDGSVPQEHSLPELIFPPACHQ--- 376 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 F S G A+ + + D G+ + L P L + ++ + Sbjct: 377 --FYCSGGIHTIADVKQDDIVPC--LADTVRRFGVKSKLVMPILENETLWGLLIAHH--- 429 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + W E ++T Q ++ ++ E Sbjct: 430 ----YTTIRQWQPWEAELLCSLTTQVTIAIQQAELYSQLQA-------ELRERQHIQQER 478 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L + D + I+N EG + N A K+ G + I +PF ++ Sbjct: 479 DRL---FNLSVDILGIVNFEGYFIDVNPAFEKILGISSDAIKAQPFIEWVHPEDREATQA 535 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + ++ S ++ +++ + HDI+E KQ + L Sbjct: 536 QMRKLASGITIKSF--ENRYCSQDGSYQWFSWTAVPFVQERLVYVVAHDITERKQAEQAL 593 Query: 572 SHAKKI 577 +++ Sbjct: 594 QESEQR 599 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 32/372 (8%), Positives = 78/372 (20%), Gaps = 25/372 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 GY +++ K +G + + + + L T + Sbjct: 495 EGYFIDVNPAFEKILGISSDAIKAQPFIEWVHPEDREATQAQMRKLASGITIKSFENRYC 554 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + + A+P + + R + + H + +++F + + Sbjct: 555 SQDGSYQ-WFSWTAVP-FVQERLV-----YVVAHDITERKQAEQALQESEQRFRTVADFT 607 Query: 212 KGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 N S L D T+ Sbjct: 608 YDWEYWRDPDGSFIYVSPSCQRITGYQAEEFLNDPSLLEAIIHPDDRQRMTKHIREQLDN 667 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENL 321 T + + + + + S +E E Sbjct: 668 PHVYSTDFRLITRTGSIRWIAHACQPVYSKDRRWLGQRASNRDISDRKQTEEALYYREQQ 727 Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 V+ P + H Y NP+ + K + I + L P Sbjct: 728 FRALVENSPDIVARFDHQLRHLYVNPAIEQVAKCSAQTFIGK---TNEELGMPPDKAQFW 784 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + T + + N + + Sbjct: 785 DEALRSVFTTGQEQLIEFDFPT----SKGMKFFHSRIVPELNADGTIRSVLSVTRDITAH 840 Query: 441 RINKRKMEIEVM 452 + + ++ Sbjct: 841 KEIEVALQQAKD 852 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 27/263 (10%), Positives = 67/263 (25%), Gaps = 20/263 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G E++ + G +++G R+ D +D+ + Q G+ L Sbjct: 28 DDQGQYVEVNPAACRLFGLSREELLGCRISDFTDLEFDFQEA--WRIFLEQGQVKGEFRL 85 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT Y+ R I+ A ++ +++ + Sbjct: 86 RRRDGTIRETE--------YAATANVIPHRHLSILRDITDRKQVEAELRQSEERLNLALY 137 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDV-LKTEKYPLLT 263 + + L + E H DD + Sbjct: 138 AAQMGIWDWNLLTNQIRWSEHHEVLFGLTPGTYDGTYKTFEACIHPDDREAVKQAANRSQ 197 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E+ + + + + + + + + ++ L S + Sbjct: 198 LEQHEYDHEFRVVWSDGSIHWIEGKGKFIYDQTGQAVRMLGTVIDISDRKQAETQIYRLN 257 Query: 324 ETVDKCPIPFFVYSHGNLFYANP 346 +++ + L N Sbjct: 258 AELEQR----VIERTQELQRTND 276 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 8/147 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNTW 143 W D G +S + G A + + L + HI + L + + Sbjct: 613 WR-DPDGSFIYVSPSCQRITGYQAEEFLNDPSLLEAIIHPDDRQRMTKHIREQLDNPHVY 671 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 L G+ ++ A P+YS++R + G R +++ Sbjct: 672 STDFRLITRTGSIRWIAH--ACQPVYSKDRRWLGQR--ASNRDISDRKQTEEALYYREQQ 727 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP 230 F L E + + Sbjct: 728 FRALVENSPDIVARFDHQLRHLYVNPA 754 >gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183] gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175] Length = 1238 Score = 364 bits (934), Expect = 4e-98, Method: Composition-based stats. Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + Y + L+ + E Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658 Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + R + + T DI+ K + L AK+ AE Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G+ + + Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + +H DD ++ E+Y L + + N + Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + L + + + + + Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223] Length = 1238 Score = 363 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + Y + L+ + E Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658 Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + R + + T DI+ K + L AK+ AE Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G+ + + Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + +H DD ++ E+Y L + + N + Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + L + + + + + Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 573 Score = 363 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 112/424 (26%), Positives = 198/424 (46%), Gaps = 22/424 (5%) Query: 405 WNRENSLAMTFIPFEKANQ---------FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 W + + F + + E + I + + Q Sbjct: 149 WVGGRLVGVVFHEHCGELRQWTVDEENFAGSIADFVSLAMETKERNIAQEALRKSEAQFR 208 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510 +I E +S GI +++ + I+ N A+ ++ GY E++ K FT ++ Q V Sbjct: 209 AIFELSSIGIGLVDMKAQIVDANPALCQILGYQREELCGKSFTDYISQQRGDVERYKQLM 268 Query: 511 -HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 + + LE ++ +L+ R+ + +P SS + + DI+E K Sbjct: 269 TEICIDAQQRHEKPHLEIERAFLHRDGRLVWARLSVSVIPGSSGEPEYFLAIIDDITERK 328 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + KL ++ AE S KS+FLA +SHE+RTPL AI+G S++++ + G L N + E Sbjct: 329 QTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NEKQQE 387 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N I SG +L ++ND+LD+SK+E+GK L P+ + + ++ + V+ A K + Sbjct: 388 YINCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLK 447 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +AD R +KQ+ LN+L+NAI FT G ++ + + + DTG Sbjct: 448 LTQEIDPEANICIADDRRIKQMLLNLLTNAIKFTSVG-EVSLIVKRVPEG-INFIISDTG 505 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + + +PF Q+ + + EGTGLGL L + + + G + ST G+ Sbjct: 506 IGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFT 565 Query: 806 IIFP 809 + P Sbjct: 566 LFLP 569 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 34/321 (10%), Positives = 79/321 (24%), Gaps = 31/321 (9%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF--TWN--------IDAHGYLKE 97 + ++ NF + VS N +F + +D + + Sbjct: 170 TVDEENFAGSIADFVSLAMETKERNIAQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVD 229 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---------HIGDLLKRQNTWYGKTT 148 + L + +G ++ G D D + + Sbjct: 230 ANPALCQILGYQREELCGKSFTDYISQQRGDVERYKQLMTEICIDAQQRHEKPHLEIERA 289 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G ++ + ++ +P + E F I+ + Sbjct: 290 FLHRDGRLVWARLSVSVIP--GSSGEPEYF--LAIIDDITERKQTEMKLRASQAAAEAGS 345 Query: 209 EIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 K + + L + V SL E + + + LL Sbjct: 346 RAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQEYINCIYSSGEHLLALIND 405 Query: 268 SL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L ++E F L T+++ + L+ P + + Sbjct: 406 ILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEANICIADDRR 465 Query: 321 LTPETVDKCPIPFFVYSHGNL 341 + ++ S G + Sbjct: 466 IKQMLLNLLTNAIKFTSVGEV 486 >gi|254412177|ref|ZP_05025952.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181143|gb|EDX76132.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1263 Score = 363 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 123/851 (14%), Positives = 269/851 (31%), Gaps = 136/851 (15%) Query: 92 HGYLKEISEELPKTIGNYAFKM--IGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + + + +G + +G L + + + ++R T + Sbjct: 199 EQRNIYSNRTITEILGYSPEAVQAMGETLLSQLMHPDDL---AKLSAQIERLATASDREI 255 Query: 149 ----LWPIEGTNLYVPIDLAALPIYSR--NREFSGFRGFGIV------------------ 184 + + + ++++ + + G Sbjct: 256 IETEYRMRRANGEWCWLY-SRDTVFTKTPDGKPQQILGVATDITTIKLAEAKILSLNAEL 314 Query: 185 -------------------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 R + +++F + E ++ I Sbjct: 315 EQRVKERTEALQQANEELKREIRDRQQAEKTLRESEEQFRSIFENVSVGIALLDLDGYIL 374 Query: 226 SQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKY---PLLTSEESSLPEQEDFHTINL 280 + +++ + + L + +L + ++ + + + Sbjct: 375 TANEANCRFLGYSPDEIVGMHFSGLTHPEDLSLDTDLFDSILCGKRTNYTIDKRYLRQDG 434 Query: 281 NQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 + +++ + + E + P+ + Sbjct: 435 ACVWGRITVSMIKDEQSSPRYIAVVCEDINDRKQMEEELRESQQKYKTLFKIFPMGISIT 494 Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 GN+ AN + + + R+ Sbjct: 495 DKGGNIIEANSASEEILGLSRQEQTSRTYDAPNWSIIRLDGTPMPASEFASVRALTENRV 554 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 I ++ ++ + D + ++ + + Sbjct: 555 IENMEMGILKAKDKITWISVTAAPIPLAD---YGVAIAYIDVSDRKRMEKALRESQQKYK 611 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNTPSVMNH 511 ++ + GI+I +++G ++ N A K+ G V D + P + + + Sbjct: 612 TLFQILPIGISITDKQGNLIEANAASEKILGLSVSDRINAKYVTPQLNVIRPDGTVMPRS 671 Query: 512 YLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKN 569 + +L Q + + K+ + +P S + DI+E KQ + Sbjct: 672 EFANVKALIQNQVIKNHEAGIVKPDGKITWISATASPIPLRDSGVVVAYLDITERKQAEE 731 Query: 570 KLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 L AK++A + + KS+FL +SHE+RTPL I+G+++++K L NP Sbjct: 732 ALQQAKEVAVREAKRSEIANRAKSEFLTNMSHELRTPLNGILGYAQLLKQD--TTLTNP- 788 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 N I + G +L ++ND+LD++KIE+ KM L+ L + L QL A +K Sbjct: 789 QHHNLNIIHQCGEHLLTLINDILDLAKIEAQKMELYPTEFHLPNFLHSLADLFQLRAQQK 848 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---- 737 I+ + +P ++AD + ++Q+ N+LSNAI FT G ++ + + + +V Sbjct: 849 DIIFTYQVLSPLPNGVIADNKRLRQVLCNLLSNAIKFTDRG-EVTFTVSVVNRTDVKSAC 907 Query: 738 ------------------------------------------------ILRVRDTGVGMT 749 +++DTGVG+ Sbjct: 908 RNSAVESKLSQSGFCTNLTSNSQNQVPKPTPTNPVYSRLAKDQHCKTIRFQIKDTGVGID 967 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--II 807 +L K PF Q+ + EGTGLGL +++ ++ + + S P KG+ I Sbjct: 968 LSQLTKIFLPFHQV-SDHSHATEGTGLGLAISQKLIQLMGSEIKVKSIPGKGSTFWFDIN 1026 Query: 808 FPLYDTSHPHD 818 PL H + Sbjct: 1027 LPLVSGWHEPN 1037 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 56/602 (9%), Positives = 155/602 (25%), Gaps = 88/602 (14%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97 NP + + QE N+ F + D+ G Sbjct: 34 PYSASNPSQSQP-ANPVSCPFQEQKGNSEACAFLAIFNDSLDAMVI-----ADSQGKFLR 87 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 ++ + +++ + + + I ++ L +R+ T+ LW +GT Sbjct: 88 VNRAAGELFKLSEDQLLHRTILETTP---ISLHDWCHFLAQRRITYNF--CLWRADGTQR 142 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 V ++ A + + ++ ++ + + + Sbjct: 143 DVELEGTANMLPDHH--------LLVLRDVTEYQQAEKALQQSQNFVEQISQSISAIVYI 194 Query: 218 ----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 SP M + S + + + S+ Sbjct: 195 YDIIEQRNIYSNRTITEILGYSPEAVQAMGETLLSQLMHPDDLAKLSAQIERLATASDRE 254 Query: 268 SLPEQEDFHTINLNQYTKKQYFG-----------------------------------TL 292 + + N L Sbjct: 255 IIETEYRMRRANGEWCWLYSRDTVFTKTPDGKPQQILGVATDITTIKLAEAKILSLNAEL 314 Query: 293 QNNSKESFEYLS---------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLF 342 + KE E L R+ E E + + + G + Sbjct: 315 EQRVKERTEALQQANEELKREIRDRQQAEKTLRESEEQFRSIFENVSVGIALLDLDGYIL 374 Query: 343 YANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 AN + Y + + GL+ D + + + Sbjct: 375 TANEANCRFLGYSPDEIVGMHFSGLTH------PEDLSLDTDLFDSILCGKRTNYTIDKR 428 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + ++ + + D + + ++ + ++ + Sbjct: 429 YLRQDGA-CVWGRITVSMIKDEQSSPRYIAVVCEDINDRKQMEEELRESQQKYKTLFKIF 487 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEIL 517 GI+I ++ G I+ N A ++ G ++ + + + + + + Sbjct: 488 PMGISITDKGGNIIEANSASEEILGLSRQEQTSRTYDAPNWSIIRLDGTPMPASEFASVR 547 Query: 518 SLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAK 575 +L + +E ++K+ + + +P ++ D+S+ K+ + L ++ Sbjct: 548 ALTENRVIENMEMGILKAKDKITWISVTAAPIPLADYGVAIAYIDVSDRKRMEKALRESQ 607 Query: 576 KI 577 + Sbjct: 608 QK 609 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 51/462 (11%), Positives = 124/462 (26%), Gaps = 29/462 (6%) Query: 10 PEDILTSNCKGNTQDLSKKKID--NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67 P+ IL T L++ KI N ++ K+ + + + Sbjct: 287 PQQILGVATDITTIKLAEAKILSLNAELEQRVKERTEALQQANEELKREIRDRQQAEKTL 346 Query: 68 LDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125 +SE F F+ + + +D GY+ +E + +G +++GM ++ Sbjct: 347 RESEEQFRSIFENVSVGIAL---LDLDGYILTANEANCRFLGYSPDEIVGMHFSGLTHPE 403 Query: 126 HIDPNNHIGD--LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + + + D L ++ + +G ++ I ++ I + + Sbjct: 404 DLSLDTDLFDSILCGKRTNYTIDKRYLRQDGACVWGRITVSM--IKDEQSS-PRYIAV-V 459 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + +K+ L +I S+ + +I S + ++ Sbjct: 460 CEDINDRKQMEEELRESQQKYKTLFKIFPMGISITDKGGNIIEANSASEEILGLSRQEQT 519 Query: 244 TEYYAHKDDVLKTEK-YPLLTSE---ESSLPEQEDFHTINLNQYTKKQYFG--------T 291 + Y + + P+ SE +L E + + K Sbjct: 520 SRTYDAPNWSIIRLDGTPMPASEFASVRALTENRVIENMEMGILKAKDKITWISVTAAPI 579 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350 + + Y+ + + E + PI + GNL AN + Sbjct: 580 PLADYGVAIAYIDVSDRKRMEKALRESQQKYKTLFQILPIGISITDKQGNLIEANAASEK 639 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + D I L ++ I Sbjct: 640 ILGLSVSDRINAKYVTPQLNVIRPDGTVMPRSEFANVKALIQNQVIKNHEAGIVKPDGKI 699 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 ++ + + + + + ++ Sbjct: 700 TWISATASPIPLRDS---GVVVAYLDITERKQAEEALQQAKE 738 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 48/398 (12%), Positives = 121/398 (30%), Gaps = 54/398 (13%) Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK----LSDNNAIK 382 D S G N + L K + +T + L+ Sbjct: 71 DSLDAMVIADSQGKFLRVNRAAGELFKLSEDQLLHRTILETTPISLHDWCHFLAQRRITY 130 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L+R+D T + L + + + + Sbjct: 131 NFCLWRADGTQRDVELEGTANMLPDHHLLVL---------------------RDVTEYQQ 169 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRK---PFT 498 ++ ++ + I ++ S + I + E + +NR ++++ GY E + + Sbjct: 170 AEKALQQSQNFVEQISQSISAIVYIYDIIEQRNIYSNRTITEILGYSPEAVQAMGETLLS 229 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSC 553 + + + ++ + + + R+ +E + L Sbjct: 230 QLMHPDDLAKLSAQIERLATASDREIIETEYRMRRANGEWCWLYSRDTVFTKTPDGKPQQ 289 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 DI+ K + K+ E+ +++ L + + E++ I+++ Sbjct: 290 ILGVATDITTIKLAEAKILSLNAELEQRVKERTEALQQANEELK----------REIRDR 339 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + E I + ++ + +++ LD + + + N F S DE V Sbjct: 340 QQAEKTLRESEEQFRSIFENVSVGIALLD--LDGYILTANEANCRFLGYSPDEIVG---M 394 Query: 674 LVQLYANEKRILIRTSFANNIP-----RILADLRSVKQ 706 + + + + T ++I D R ++Q Sbjct: 395 HFSGLTHPEDLSLDTDLFDSILCGKRTNYTIDKRYLRQ 432 Score = 72.8 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 30/206 (14%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +I + D + I + +G L NRA +LF + +L + + + Sbjct: 65 FLAIFNDSLDAMVIADSQGKFLRVNRAAGELFKLSEDQLLHRTILETTPISLHDWCHFLA 124 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 R T + ++ + L LP + L + D++E++Q + L Sbjct: 125 QR------RITYNFCLWRADGTQRDVELEGTANMLPD--HHLLVLRDVTEYQQAEKALQQ 176 Query: 574 AKKIAEKESSHKSDFLARVSHEI---------RTPLTAIIGFS--------EVIKNQRFG 616 ++ E+ S S + ++I RT +T I+G+S E + +Q Sbjct: 177 SQNFVEQISQSISAIVYI--YDIIEQRNIYSNRT-ITEILGYSPEAVQAMGETLLSQLMH 233 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVN 642 P + + + + +I+ Sbjct: 234 PDDLAKLSAQIERLATASDR--EIIE 257 >gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1136 Score = 363 bits (933), Expect = 5e-98, Method: Composition-based stats. Identities = 133/782 (17%), Positives = 243/782 (31%), Gaps = 88/782 (11%) Query: 100 EELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIE-- 153 E+ A +++ D + I + P I L W + Sbjct: 76 PEITAMRPIPAERLLIRVKEFFSDFATISLLSPGGTIVASNLPTGREINYGDRPWVRQAL 135 Query: 154 ------------GTNLYVPIDLAALPIYSRNREFSGF-------RGF-GIVHVNRVDNDP 193 G +P A P+ G F G+ + + Sbjct: 136 AGQALAIGGFTAGKRTGLPGLALACPVRDPAGTIIGVCTLNLRLSWFSGVFSDKAMPPEA 195 Query: 194 ------------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 A + L + + I + P + V Sbjct: 196 TACLLDGQGNVLAAWPEASRPIGRPLPDAATIMTEHGHAPKAIRTGPGPDGAASFEAIVP 255 Query: 242 SL----TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + Y +++ L + L L L+ + Sbjct: 256 VMANGRDALYLQLGLPVRSVGASLERTMFRDLGFLVVTLAFALLAALVFSNTTLLRPTRQ 315 Query: 298 ESFEYLSHRNH----------------------PSLSAYFDEGENLTPETVDKCPIPFFV 335 + ++A E T E +D P P F Sbjct: 316 LVRTATAMARGNLSSRLDIGPGYGELSELGRALDVMAASLRERIRFTQELIDAIPAPVFY 375 Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 S G N ++ T + I S + AP+++ + I Sbjct: 376 KSLDGRYLGCNKTYE--TMVHPLASILGK--TSRAVQAPEIARQCEDTDREALTEPQRSI 431 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R + N G+ + R ++ + + Sbjct: 432 QFEMRA---RLRDGAWHDQLVTKSSFENASGVTAGIIGVMQDITTLRHSEMALSDSEAKY 488 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++L + DG +I ++ I+ +N A ++ GY E++ + + L Sbjct: 489 RTLLASMRDGFVVIGKDNRIMESNPAFREMLGYSREELNGLTTLDITPERWQAPEEAVLR 548 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNK 570 + + K+ + + + + Y + D++E K + Sbjct: 549 TAVDTQGFSGI-FEKEYRRKDGSVFPAALRLQRYPSRGDDARRYFAIVRDVTEDKAIEAD 607 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ AE + KSDFLA++SH+IRTPL A+IG +E+ + + + Sbjct: 608 LRAAKEAAETANRAKSDFLAKMSHDIRTPLNAVIGMTELTLDTPLSH----QQRDALETA 663 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L ++ND+LDIS+IE+ K+ L + L ++ ++ A +K + + + Sbjct: 664 RESAASLLALINDILDISRIEARKLELASDVFDLRRTLAGITRSMRAQAKDKGLRLALAI 723 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII------STTHTSNEEVILRVRD 743 A PR + D ++QI LN++ N I FT G +I + V D Sbjct: 724 APRTPRFVTGDPVRLRQILLNLVGNGIKFTDQGSVSLIVGPDTGQAKPDGATAIAFTVSD 783 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + LE F Q S + GTGLGL + + + G S P G+ Sbjct: 784 TGIGIESERLEGIFDMFAQADASITRQYGGTGLGLAICRELARLMGGCIVAESRPGAGSR 843 Query: 804 IE 805 Sbjct: 844 FR 845 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 62/248 (25%), Gaps = 11/248 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146 I + E + + +G ++ G+ D++ P + + G + Sbjct: 502 IGKDNRIMESNPAFREMLGYSREELNGLTTLDITPERWQAPEEAVLRTAVDTQGFSGIFE 561 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ + L P + R F IV D A + + Sbjct: 562 KEYRRKDGSVFPAALRLQRYPSRGDDAR----RYFAIVRDVTEDKAIEADLRAAKEAAET 617 Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + K + + + ++ E L + Sbjct: 618 ANRAKSDFLAKMSHDIRTPLNAVIGMTELTLDTPLSHQQRDALETARESAASLLALINDI 677 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + E + + T +++ +K+ L+ P + Sbjct: 678 LDISRIEARKLELASDVFDLRRTLAGITRSMRAQAKDKGLRLALAIAPRTPRFVTGDPVR 737 Query: 322 TPETVDKC 329 + + Sbjct: 738 LRQILLNL 745 >gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 878 Score = 363 bits (933), Expect = 6e-98, Method: Composition-based stats. Identities = 116/583 (19%), Positives = 234/583 (40%), Gaps = 27/583 (4%) Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 +D + ++++ ++ + + + + + ++ + Sbjct: 157 VYPEDKQSVMQGIGQALAQKTDYNDEFRIIRSDQSVHWISAKGKFIYDEQGQAVRMIGVC 216 Query: 307 NHPSLSAYFDEGENLTP-ETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 ++ +E + ++ I S +++ N I Sbjct: 217 METTVCKQAEESTRELTTQVQEQANILNAILTASVDHIYIFNRRGCYQYVSSDAASILGF 276 Query: 364 GGLS----TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 TL D +D L +T + + + Sbjct: 277 QPQDIVGKTLQDLDLPTDLVEQVDNQLKAVIKTGQPIKDECKYVTADGVHYYEYIITALR 336 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 NQ E + + + + ++ + + + E+ G+A N +G ++ N Sbjct: 337 NLNQSIE--GVIIVSRDITEHKRAEKSLRESEARFRRLFESNLIGVAFWNVDGFVIDAND 394 Query: 480 AVSKLFGYPVED--ILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 A +L GY E+ +L K + F + + + E+ + + + EK + + Sbjct: 395 AFLQLAGYTHEEFTLLGKVNWQEFTPIEYKYLDDRAILEVQTTGVSKIYEKEYIHRNGKR 454 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFL 589 + L I + + + DI++ K + + A++ AE + K +FL Sbjct: 455 VPIVLGIALLNDSQEHGVAFVL-DITDRKLAEKECDRLLQCERTARQEAEIANQIKDEFL 513 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHE+RTPL I+G+S++++ ++F R I+R+ L ++ DLLD+S+ Sbjct: 514 AVLSHELRTPLNPILGWSKMLRTRKFDQQTTNRA---LETIERNAKLQTQLIEDLLDVSR 570 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I GK+NL+ PV+L V A+ V+L A K I I+T F ++ +++ D ++Q+ Sbjct: 571 ILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDASLGQVMGDPNRLQQVVW 630 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+LSNA+ FTP+GG++ I ++ ++ ++V DTG G+ L F Q + Sbjct: 631 NLLSNAVKFTPTGGRVGIRL-MEASNQIQIQVSDTGKGINPDFLPYVFDYFRQADGTTTR 689 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPL 810 G GLGL + + +V+ + GK S P G + PL Sbjct: 690 TFGGLGLGLAIVRKVVEMHGGKVQAES-PGDGLGATFTVEVPL 731 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 38/379 (10%), Positives = 102/379 (26%), Gaps = 35/379 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLW 150 G + +S + +G ++G L D+ + +N + ++K + Sbjct: 261 GCYQYVSSDAASILGFQPQDIVGKTLQDLDLPTDLVEQVDNQLKAVIKTGQPIKDECKYV 320 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G + Y + + + N+ G + + + +F L E Sbjct: 321 TADGVHYY---EYIITALRNLNQSIEGV--IIVSRDITEHKRAEKSLRESEARFRRLFES 375 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + L + + L + + ++ + E Sbjct: 376 NLIGVAFWNVDGFVIDANDAFLQLAGYTHEEFTLLGKVNWQEFTPIEYKYLDDRAILEVQ 435 Query: 269 LPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLT 322 ++++ N + L ++ + L + D Sbjct: 436 TTGVSKIYEKEYIHRNGKRVPIVLGIALLNDSQEHGVAFVLDITDRKLAEKECDRLLQCE 495 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + I + FL + ++ + G S +L K + Sbjct: 496 RTARQEAEIANQIKDE---------FLAVLSHELRTPLNPILGWSKMLRTRKFDQQTTNR 546 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + I +A+L T + + P N + + Sbjct: 547 AL-------ETIERNAKLQTQLIED----LLDVSRILQGKLNLNICPVNLVMVVEAALET 595 Query: 443 NKRKMEIEVMQLCSILEAT 461 + + + +Q+ +I +A+ Sbjct: 596 VRLAAQAKSIQIQTIFDAS 614 Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats. Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 9/168 (5%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + E + + ++ +L L+ + G+ N + + LFG Sbjct: 88 QQEIAQRQQLEVILKDSEERLRLALDVSQMGLWDWNILTNQVIWSENYELLFGLIPSSFD 147 Query: 494 R--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + F + + + + L+ ++ + + K + Sbjct: 148 GPYETFQKCVYPEDKQSVMQGIGQALAQKT--DYNDEFRIIRSDQSVHWISAKGKFIYDE 205 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKI-AEKESSHKSDFLARVSH 594 + + KQ + E+ + + A V H Sbjct: 206 QGQAVRMIGVCMETTVCKQAEESTRELTTQVQEQANILNAILTASVDH 253 Score = 39.6 bits (91), Expect = 2.1, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 18/175 (10%) Query: 69 DSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK--MIGM-RLCDVSD 123 +SE F F+ V F WN+D G++ + ++ + G + ++G + + Sbjct: 364 ESEARFRRLFESNLIGVAF-WNVD--GFVIDANDAFLQLAGYTHEEFTLLGKVNWQEFTP 420 Query: 124 IL--HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 I ++D + I ++ + + G VPI L + G Sbjct: 421 IEYKYLD-DRAILEVQTTGVSKIYEKEYIHRNG--KRVPIVLGIALLNDSQE-----HGV 472 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 V RL + + + + ++ E + S + P + Sbjct: 473 AFVLDITDRKLAEKECDRLLQCERTARQEAEIANQIKDEFLAVLSHELRTPLNPI 527 >gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1437 Score = 363 bits (933), Expect = 6e-98, Method: Composition-based stats. Identities = 87/468 (18%), Positives = 183/468 (39%), Gaps = 55/468 (11%) Query: 390 DRTCIAASARLHTIQWNRENSLAMTFI---PFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + + + M + + V + + Sbjct: 482 EGHARVIREAVVPVIRDNRVVAIMGLGNKPAAYDKKDVEVISFFADVTWDLVQQKRTQEA 541 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ++ +L +I +A I +++ +G + N A + GY ++ + + + + Sbjct: 542 LQNSQARLKTITDAAQTAIIMMDAQGYVSYWNPAAETILGYARDEAIGRDLHELIMPSRY 601 Query: 507 -SVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDI 561 + E S + + TK + + + + + + + + DI Sbjct: 602 TEDFHASFPEFQSTGQGNAVGRTTELYALTKNGREIPVELSLSSVLIQGQWHAIGIVRDI 661 Query: 562 SEWKQEKNKLSHA--------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 +E KQ + +L + AE+ + KS+FLA +SHEIRTP+ +IG + Sbjct: 662 TEKKQAQEELQRNARNLELKNAELDAARINAEEATKAKSEFLANMSHEIRTPMNGVIGMT 721 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + + YA + S +L ++ND+LD SKIE+G++++ L+ Sbjct: 722 GLLLDTDL----DSEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAM 777 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 + + ++ + A EK + + S N+P + D ++QI +N++ NA+ FT G ++ Sbjct: 778 LRDFSGMMAVKAEEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHG-EVE 836 Query: 727 ISTTHTSNEEVI---------------------------LRVRDTGVGMTNYELEKAMKP 759 I + N+E VRDTG+G+ + + + Sbjct: 837 IKVSRMVNDECENPNAETQENSHDLYRSSFTTQHSCLMHFSVRDTGIGIPEDKQDSLFES 896 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q+ S + GTGLGL +++ + + G + S +G+ Sbjct: 897 FSQVDASTTRKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTFWFT 944 Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 57/559 (10%), Positives = 140/559 (25%), Gaps = 88/559 (15%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQN 141 ++ D G ++E++ G + +G L +V +I+ +D N + L++ Sbjct: 265 VFSCDKLGRIQEMNPAAENLTGWTIDECMGRPLKEVFNIVTLDDHSQEENPVSKALQQGR 324 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-KRL 200 +T I + I + PI G + ++ L KRL Sbjct: 325 VVGQETYSVLIVRNGSKITIKKSCSPIKDNMGNIIGA--VLVFRDITGEHTANLLTMKRL 382 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----- 255 + + + + F S ++ +L+ + + Sbjct: 383 ELYEYAEAHSLDELMTKVLDDAEEFVDSSIGFFHFVEKDQKTLSLQRWSTRSLKELCHMP 442 Query: 256 --TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---- 309 YP+ + +E I+ + + G + +++ E + Sbjct: 443 GNKMHYPIDQAGVWVQAAREKRPVIHNDYESMPDKKGLPEGHARVIREAVVPVIRDNRVV 502 Query: 310 ----------------------------------SLSAYFDEGENLTPETVDKCPIPFFV 335 + D + Sbjct: 503 AIMGLGNKPAAYDKKDVEVISFFADVTWDLVQQKRTQEALQNSQARLKTITDAAQTAIIM 562 Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 G + Y NP+ + Y + I ++ + D +A P + Sbjct: 563 MDAQGYVSYWNPAAETILGYARDEAIGRDLH-ELIMPSRYTEDFHASFPEFQSTGQGNAV 621 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + L+ + N + GI + + + + +++ L Sbjct: 622 GRTTELYALTKNGREIPVELSLSSVLIQGQ---WHAIGIVRDITEKKQAQEELQRNARNL 678 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + N E N + E + + N M L Sbjct: 679 E-----------LKNAELDAARIN--AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLL 725 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + +Q + + ++DI ++ + + Sbjct: 726 DTDLDSEQQHYARTVR------------------SSAESLLTVINDILDFSKIEAGRLDI 767 Query: 575 KKIAEKESSHKSDFLARVS 593 + + + DF ++ Sbjct: 768 ETVDFDLEAMLRDFSGMMA 786 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 8/151 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R ++ ++ + L A SDG+ ++ G I N A L G+ +++ + +P Sbjct: 241 RHSEMQLLESRDHTAATLHAISDGVFSCDKLGRIQEMNPAAENLTGWTIDECMGRPLKEV 300 Query: 501 LEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553 + S + +++ L E ++ + ++++ + + Sbjct: 301 FNIVTLDDHSQEENPVSKALQQGRVVGQETYSVLIVRNGSKITIKKSCSPIKDNMGNIIG 360 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L DI+ N L+ + + + Sbjct: 361 AVLVFRDITGE-HTANLLTMKRLELYEYAEA 390 Score = 41.2 bits (95), Expect = 0.70, Method: Composition-based stats. Identities = 21/270 (7%), Positives = 63/270 (23%), Gaps = 29/270 (10%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E + T T+ F G + NP+ LT + + + Sbjct: 243 SEMQLLESRDHTAATLHAISDGVFSCDKLGRIQEMNPAAENLTGWTIDECMGRPLKEVFN 302 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + PV + I N + + + Sbjct: 303 IVTLDDHSQEEN-PVSKALQQGRVVGQETYSVLIVRNGSKIT-IKKSCSPIKDNMGNIIG 360 Query: 430 QNGIEPEDVDTRIN-----------KRKMEIEVMQLCS-ILEATSDGIAIINRE-GIILS 476 + + + + +L + +L+ + + + G Sbjct: 361 AVLVFRDITGEHTANLLTMKRLELYEYAEAHSLDELMTKVLDDAEEFV---DSSIGFFHF 417 Query: 477 TNR-----AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 + ++ + ++++ P + + ++ + ++ Sbjct: 418 VEKDQKTLSLQRWSTRSLKELCHMPGNKMHYPIDQAGV--WVQAAREKRPVIHNDYESMP 475 Query: 532 STK---EEKLLSLRIIIKKLPFSSCYSLTM 558 K E +R + + + M Sbjct: 476 DKKGLPEGHARVIREAVVPVIRDNRVVAIM 505 >gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis TAC125] gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas haloplanktis TAC125] Length = 1107 Score = 363 bits (933), Expect = 6e-98, Method: Composition-based stats. Identities = 97/517 (18%), Positives = 210/517 (40%), Gaps = 24/517 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + L E+ ++ + G + N + + ++ + ++ Sbjct: 255 GMVRYKLLLEKKSADESRLNAILETAIDGIVTIDHQGIILSFNDAASKILGWREHE-LQG 313 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L D L++ ++ + L S I + + L + + Sbjct: 314 KSVQILLNDNNALNNASSSGDMTLDLS--AIIGINRDTFAKHKDNH--LIPVRLGIGQVT 369 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREGIILSTNR 479 Q + G + R ++ + + S+++ G+A + +L + Sbjct: 370 QTGQPPLYVGFITDLTQQRALQKTVVENEQKYRSLMQNMP-GVAFRCKFDTNYTMLFVSP 428 Query: 480 AVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 ++ L GY ++ + + + ++ ++ LT ++ + ++ + Sbjct: 429 SILDLTGYTPDEFIEQHIEFTDLILKSDQQMIITTLTNAVTEKRQYSV--EYRIRHRNGA 486 Query: 538 LLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + + + DI+E K+ + KL HAK AE+ ++ K F+A +S Sbjct: 487 TVWVLEKGSFDFNNTDVAQWIDGVLVDITERKEYEAKLEHAKLQAEEAANAKQSFMANMS 546 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ AIIGFS+++ + ++ ++ + +L ++N++LD +K+E G Sbjct: 547 HEIRTPMNAIIGFSDLLMDTPLSK----EQQKHLVTVNNAARSLLRLLNEILDSAKLERG 602 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNIL 712 K+ + +L + IS L A +K + + + ++ D ++QI N++ Sbjct: 603 KLTIEPVHFNLKPVIDSIISTFWLEAKKKNLNLTLNINKSVSTAYYGDPDRLRQILTNLI 662 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI FT G + ++ + T N + V+DTG+G+ ++ +PF Q + R Sbjct: 663 GNAIKFTEQGA-VTVTVSTTQNNHLFFEVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFG 721 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLG ++K +V+ G + S KG+ P Sbjct: 722 GTGLGTTISKQLVELMHGSIDLVSEVDKGSCFYFSLP 758 Score = 77.4 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 4/192 (2%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 A I + S +TF+ A + V ++ K + +L Sbjct: 215 FVATSPLIYADENTSAGLTFVAIAVATATVAITSVVAVINGMVRYKLLLEKKSADESRLN 274 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +ILE DGI I+ +GIILS N A SK+ G+ ++ K + L N + Sbjct: 275 AILETAIDGIVTIDHQGIILSFNDAASKILGWREHELQGKSVQILLNDNNALNNASSSGD 334 Query: 516 I-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKL 571 + L L + + T K+ L+ +R+ I ++ + Y + D+++ + + + Sbjct: 335 MTLDLSAIIGINRDTFAKHKDNHLIPVRLGIGQVTQTGQPPLYVGFITDLTQQRALQKTV 394 Query: 572 SHAKKIAEKESS 583 ++ Sbjct: 395 VENEQKYRSLMQ 406 >gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 1364 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 125/706 (17%), Positives = 248/706 (35%), Gaps = 65/706 (9%) Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + PI + SG+R GF ++ P+ +++ Sbjct: 185 SGEPIMTSPISLSGYRFPSESGFLVLLAIYREGMPLQTPQQRMAATSGWVYAPFSVEQMV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ ++ + + A + V++ T ++ P Sbjct: 245 QSALGERDEVALDLSDRNESTHNFYRSGTPANDSALRPPVVQLLPMYGRTWVITAHPTAS 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + L N + L Sbjct: 305 FLASLNQNSPWLIGGLVMAGAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G++ + NP+ + Y + + I+ L+ LL + Sbjct: 365 AETPDGHITHWNPAAEAMFGYTAEEAIDQ--DLTMLLSPQPYAMPEVDHADA------AL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 + T++ + + + + + + + ++ Sbjct: 417 AGNALAAQTMRHRDGHQVYVLASKAPIIESEGTLSGHSHFFRDISERVRSHQRIIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A KL GY +++ + Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYSAAEVIGR 536 Query: 496 PFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + H L + + TLE + + + L + Sbjct: 537 RKASQFIEQDELQARAHMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ E IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QEMVTKIDRSARALLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G+GLGL +++ +V+ G+ + S P +G+ + L ++ P Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVITLEKSAPPQ 877 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 55/440 (12%), Positives = 124/440 (28%), Gaps = 51/440 (11%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 EF G G+G +H RV + + ++ + + E+Y + + Sbjct: 99 RDYPHEFPGVLGYGYIH--RVAPADEDAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS S + + L + Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPIMTSPISLSGYRFPSESGFLVLLAIYRE 216 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 LQ + +VY+ ++ S Sbjct: 217 GMPLQTPQQRMAATSG-----------------------------WVYAPFSVEQMVQSA 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWN 406 L ++D + + ++++A++P V L +A Sbjct: 248 LGERDEVALDLSDRNESTHNFYRSGTPANDSALRPPVVQLLPMYGRTWVITAHPTASFLA 307 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 SL + + + + ++ + M+L +++ +S+ I Sbjct: 308 ---SLNQNSPWLIGGLVMAGAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +G I N A +FGY E+ + + T+ L + + L Sbjct: 365 AETPDGHITHWNPAAEAMFGYTAEEAIDQDLTMLLSP--QPYAMPEVDHADAALAGNALA 422 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582 T+ ++ + + + S DISE + ++ E + Sbjct: 423 AQTM-RHRDGHQVYVLASKAPIIESEGTLSGHSHFFRDISERVRSHQRIIDLNASLEHQV 481 Query: 583 SHKSDFL--------ARVSH 594 + ++ L A ++H Sbjct: 482 AERTSELVKFSVLQRAILAH 501 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 66/284 (23%), Gaps = 25/284 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138 D+ G++ + K +G A ++IG R + + H + L+ Sbjct: 509 TDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFIEQDELQARAHMLADQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQEMVTKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306 + ++ + E I+L + + S + E + Sbjct: 687 RSARALLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 746 LPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 35/375 (9%), Positives = 81/375 (21%), Gaps = 12/375 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G++ + G A + I L + T+ Sbjct: 368 PDGHITHWNPAAEAMFGYTAEEAIDQDLTMLLSPQPYAMPEVDHADAALAGNALAAQTMR 427 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G V + + PI SG F L+ H ++ Sbjct: 428 HRDGHQ--VYVLASKAPIIESEGTLSGHSHF--FRDISERVRSHQRIIDLNASLEH--QV 481 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + S + K + + + + S + + L + + Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E Q + + + S + + + + Sbjct: 542 FIEQDELQARAHMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 H + + LT+ K + + SD A + Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + L + +T I + + + +E Sbjct: 660 NAILGMLYLLQRSELPGAAQEMVTKIDRSARA----LLEIINDILDFSKIEAGRIDLERA 715 Query: 451 VMQLCSILEATSDGI 465 L + + +D + Sbjct: 716 PFDLNQLFDNIADLM 730 >gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1397 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 97/595 (16%), Positives = 217/595 (36%), Gaps = 39/595 (6%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + E N + + L + + + + + Sbjct: 368 AGWDEIGQLASTFNTMTERLTASNRQRDVAENDLRQLNQDLENHVAERTADLEQANAVLI 427 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E + + + NP L Y + I + L+ P Sbjct: 428 SKEEEMRSIVEHMVDCIITIDDKSIIRSVNPVIEKLFGYTREEVIGQPVSI--LMPEPFR 485 Query: 376 SDNNAIKPVMLYRSDRT-------CIAASAR-----LHTIQWNRENSLAMTFIPFEKANQ 423 S + + ++ +N + Sbjct: 486 SGHEGYVERYYRTGRGRCEFDHILTLEVEGVHNIGMGREVEGRHKNGELIDLYVAVSEYF 545 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 G+ + + + ++ + + +I++ + + + +G+++ NR + Sbjct: 546 VGGKRYFTGVLRDIRERKRVEQALRNSEQRFRAIVDNLAALVGEMTPDGVLVEMNRTALE 605 Query: 484 LFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + G D++ K + + + ++ + + L+ Sbjct: 606 VGGLQSGDVIGKCLSETEWFSYKPEVQQQIRDDIRRAVAG---EIVRHDVAIRIANGDLM 662 Query: 540 SLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++ ++ + + + ++SE + L A+ AE+ + KS FLA +SHE Sbjct: 663 TIDFMLVPVRDDKGKVIKLIPSGINVSERIRILKDLEQARHEAEQANEAKSIFLAAMSHE 722 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ +IG ++V++ +E + I S +L+I+ D+LD SKIE+G++ Sbjct: 723 IRTPMNGVIGMADVLQQTSLSGY----QMEMVDLIRESAFALLEIIEDILDFSKIEAGRL 778 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714 + P+S+++ V +A ++++ A K + + IP +L D ++Q+ +N+ +N Sbjct: 779 EIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANN 838 Query: 715 AIHFT---PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 AI F+ G++ + +++ V + D G+GM + F Q S Sbjct: 839 AIKFSSGLQEPGRVSVRALLVEHDQDTVTVEFEITDNGIGMNEEVQSRLFTSFTQGDTST 898 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHDCI 820 R GTGLGL + +V+ G + S P +G++ + L +SH D + Sbjct: 899 TRRYGGTGLGLAITHHLVELMGGSIQVRSAPGEGSVFTVRLSFDLIPSSHMEDKV 953 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 60/248 (24%), Gaps = 13/248 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTT 148 G L E++ + G + +IG L + + ++ + G+ Sbjct: 592 PDGVLVEMNRTALEVGGLQSGDVIGKCLSE---TEWFSYKPEVQQQIRDDIRRAVAGEIV 648 Query: 149 L----WPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDK 202 I +L ID +P+ + G + R+ D ++ Sbjct: 649 RHDVAIRIANGDLMT-IDFMLVPVRDDKGKVIKLIPSGINVSERIRILKDLEQARHEAEQ 707 Query: 203 KFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 S + + + + + L + Sbjct: 708 ANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSLSGYQMEMVDLIRESAFALLEIIEDI 767 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + E + ++ L++ + L+ P++ Sbjct: 768 LDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAIPDEVLGDALR 827 Query: 322 TPETVDKC 329 + + Sbjct: 828 LRQVLVNL 835 >gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 576 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 171/375 (45%), Gaps = 34/375 (9%) Query: 444 KRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 +K+ I + +L +L DGI +++ + ++ N A KL G E K Sbjct: 222 AKKLRITLEELNEKTAGVEDLLAGIVDGIIVVDAQRRVMLINPAACKLVGADSEKSAGKK 281 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554 + ++ + + L E + L ++L + I K Sbjct: 282 LISIIR---NYQLDEAVKKTLKEGSPYFKEIVLLPRE---QILKVHITPIKDRAGRISGS 335 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + M DI+E K + +S+FLA VSHE+RTPLT+I GF E + Sbjct: 336 VIVMRDITELKHLE--------------KLRSEFLANVSHELRTPLTSIKGFVETLLEGA 381 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + G + + + ID + ++N+L+D+SKIE+ ++ L E VS E ++E I + Sbjct: 382 YKDPGLAK--RFLSIIDAEAGRLYRLINNLMDLSKIETNQLKLRIEDVSAAELINEVIII 439 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + EK + T ++P++ AD ++Q+ +N+L NAI +T SGG++ I Sbjct: 440 FENRLKEKGLKFSTDIPKDLPKVKADPDWLRQVFINLLDNAIKYTQSGGRVWIEA--EPK 497 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +V+ RV DTG+G+ +L + + F ++ ++ G+GLGL + K +V A G Sbjct: 498 GDVVEFRVCDTGIGIPEEDLPRVFERFYRVDKARSPEMGGSGLGLAIVKHIVRAFGGDIR 557 Query: 794 IFSTPAKGTLIEIIF 808 + S +G+ Sbjct: 558 VESRVNQGSKFIFTL 572 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 13/241 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA + I+ K +G + K G +L + +D + LK + ++ + Sbjct: 253 VDAQRRVMLINPAACKLVGADSEKSAGKKLISIIRNYQLD--EAVKKTLKEGSPYFKEIV 310 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L P E + + PI R SG ++ L R + + H Sbjct: 311 LLPRE-----QILKVHITPIKDRAGRISG--SVIVMRDITELKHLEKL--RSEFLANVSH 361 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E++ +S++ + P + + S+ + A + L L E + Sbjct: 362 ELRTPLTSIKGFVETLLEGAYKDPG--LAKRFLSIIDAEAGRLYRLINNLMDLSKIETNQ 419 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + + + F F ++ P + A D + +D Sbjct: 420 LKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKADPDWLRQVFINLLDN 479 Query: 329 C 329 Sbjct: 480 A 480 >gi|284165554|ref|YP_003403833.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284015209|gb|ADB61160.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 821 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 105/747 (14%), Positives = 235/747 (31%), Gaps = 44/747 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + +E + G ++G + + +L Sbjct: 100 IFMLDPDGTVASWNEGAERIKGYSEDAIVGNHFSTFYTDEDMADDVPQTNLETAAAEGRA 159 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + W + ++ I + GF + + +R Sbjct: 160 EDEGWRVRSDGTRFWANVVITAIRDDGGQLRGFTK--VTRDMTERREYEQQLRRERDLTE 217 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + E V E + ++ E Y + + ++ Sbjct: 218 RILETVPITIGVVTEDNALVRANRRMLEHFAIEDSAIETYSLESWELYDAAGEPIPADEQ 277 Query: 260 PLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLS 312 P + E P + + + + L ++ E + Sbjct: 278 PWARARERGEPVYDAQRQVEVPGIGRRWLSLNAAPLDDDQAEDGRIVVAIDDITDQKERE 337 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 N T + + PI V + G N + I + + Sbjct: 338 RLLRREYNQTEKLLRTAPIAIAVQNAEGETILTNQRAQESLGLSDQEFIGESDDVGEWEI 397 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + R T + + L Sbjct: 398 YDSDGERLPTNEMPAARVLETGNPVFNEELVVDPPDDELLQFRVNATPLHGPDGGVERVV 457 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + +R++E +L + IL SD ++ E N ++ Sbjct: 458 TAAEDITELKRRERQLEQRKSELETELSDILGRISDAFYALDDEWRFTHLNEQAAETLQQ 517 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 +D+L + + + + + ++ + + L + Sbjct: 518 SRDDVLGRKVWTTFPDDAEGIYREQFQQAMET--QEPVNFEVYAEDLD---TWLEYNVYP 572 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 S S+ HDI+E K+ ++ EK + F SH+++ PL + + Sbjct: 573 --SESGLSIYFHDITERKE-------YQRKLEKSNERLEQFAYAASHDLQEPLRMVSSYL 623 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + + R+ + E+ + + +++ LL S++++ FEPV LD Sbjct: 624 Q-LLESRYSDELDDDGEEFIEFAVDGAERMRKMIDGLLAYSRVDTQGEP--FEPVDLDTV 680 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQII 726 V +Q+ E I A ++PR+ D ++Q+ N++SNA+ ++ Q+ Sbjct: 681 VDAVCEDLQMKIEETDAEIT---AESLPRVRGDESQIQQVFQNLVSNALEYSGDEPPQVE 737 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I T + + I+ V D G+G+ + ++ + F ++ + + + +GTG+GL L + +++ Sbjct: 738 I-TAERARSKWIVSVEDNGIGIDPDDQDRVFEVFERLHS--RDKYDGTGIGLALCQRIIE 794 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + G +I S P +GT P D Sbjct: 795 RHEGTIWIDSEPGEGTTFSFALPAVDA 821 >gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli CFN 42] Length = 1133 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 119/640 (18%), Positives = 239/640 (37%), Gaps = 34/640 (5%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + E V +K+ + R +++ +TE+ + + Sbjct: 194 DALRTVLEDLPVAVFVRDDKHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEGAEPIYQ 253 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR------------N 307 L + + + + + + + + + + Y+ Sbjct: 254 ENLLALRDGISVELESEMPSTSGHVYPVISRVNRVITADGRTYVVGSFSDISPLKEREKA 313 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + + PI + + + Y N F + + D + + Sbjct: 314 LIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDRFDGRPFI 373 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLAMTFIPFEKANQF 424 + +L + + + R + A + W S+ Sbjct: 374 DVIRRNHELGRYDGTRTPEELYAFRKHLFEAEEPEPIEVGWAGGKSVIFDSRRISNDRIL 433 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + + + +E + A S G+AI+ ++GII +N A++ + Sbjct: 434 LTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNDAMADI 492 Query: 485 FGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLL 539 P + + +F + EIL + T+ E+ + Sbjct: 493 LQIPPHYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWV 552 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 ++ + + D++E K + +L AE KS+FLA +SHEIRTP Sbjct: 553 NMEATVS---SGQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTP 609 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + ++G +E++ R + + I +SGN +L I+ND+LD SKI++G+M L Sbjct: 610 MNGVLGMAELLAKTNLDT----RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRK 665 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 L EAV + +L+ +A EK I + A ++P ++ D +QI N++ NA+ F Sbjct: 666 AAFDLVEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKF 725 Query: 719 TPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G + + + E+I +R+ DTG+G+ +L+ + F Q+ S R EGTG Sbjct: 726 TERGHVFVDVGFQAAAGGEIIASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTG 785 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 LGL + +VD G S +G++ + P + Sbjct: 786 LGLAITAGLVDLFGGYINAESEWGRGSVFTVNLPFAVAAA 825 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 57/447 (12%), Positives = 129/447 (28%), Gaps = 45/447 (10%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 RE S F G +R D R DK+ L + ++ + Sbjct: 44 REISDFIG----RRSRELFDRPEEEDREDKERRALVFGTEENAICFDAANLAHERIQIES 99 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 +++ L + + E + + DF + G Sbjct: 100 FSPSPDRIYVLGMFEPRERRAAGNEANGGSSRTVNDSGVAADFARVREALEKLDHPIGIF 159 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFV-YSHGNLFYA 344 + + ++R + + ++ P+ FV L YA Sbjct: 160 AADGRPLVVNAAYRKGARPAPAHGSAWGKSVNELDALRTVLEDLPVAVFVRDDKHRLIYA 219 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N + + + + G + P+ ++ + + L D + + + + Sbjct: 220 NKYYETFSGRARSEYL---GMTEHEMFGPEGAEPIYQENL-LALRDGISVELESEMPSTS 275 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSI 457 + + G + + ++ + Q + SI Sbjct: 276 ---GHVYPVISRVNRVITADGR-TYVVGSFSDISPLKEREKALIASRKQEEVLHRDIESI 331 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNT----------P 506 L + G+ I++ + IL N ++ P ED +PF + +N P Sbjct: 332 LRSLPIGVLILDNDHRILYVNDEFYSIWELPREDRFDGRPFIDVIRRNHELGRYDGTRTP 391 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + + + + + +E G K + I + + LT DIS ++ Sbjct: 392 EELYAFRKHLFEAEEPEPIEVGWAG----GKSV---IFDSRRISNDRILLTYADISAVRE 444 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVS 593 + ++ + E+ D +S Sbjct: 445 REKEIHETRAALERVGEMMRDATHAMS 471 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 28/389 (7%), Positives = 80/389 (20%), Gaps = 31/389 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D L ++ G + +GM ++ +P L+ + ++ Sbjct: 211 DDKHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEGAEPIYQENLLALRDGISVELESE 270 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----KKF 204 + G P+ + + + F + + ++ + + Sbjct: 271 MPSTSGHVY--PVISRVNRVITADGRTYVVGSFSDISPLKEREKALIASRKQEEVLHRDI 328 Query: 205 SHLHEIKKGHSSVEKEKYDIFS-----------QQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + + + I + R V D Sbjct: 329 ESILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDRFDGRPFIDVIRRNHELGRYDGT 388 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-- 311 E+ E E + + N+ Sbjct: 389 RTPEELYAFRKHLFEAEEPEPIEVGWAGGKSVIFDSRRISNDRILLTYADISAVREREKE 448 Query: 312 ----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 A + + + + G + +N + + + G L Sbjct: 449 IHETRAALERVGEMMRDATHAMSQGLAIVQDGIIKMSNDAMADILQIPPHYIEAGQGWLG 508 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 D + +L A E + M Sbjct: 509 MFEFCAARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWVNM-------EATVSSG 561 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + + + ++ + + + Sbjct: 562 QHWVALFTDVTELKSREEELRQLLSRAEA 590 >gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 738 Score = 363 bits (932), Expect = 6e-98, Method: Composition-based stats. Identities = 125/507 (24%), Positives = 221/507 (43%), Gaps = 48/507 (9%) Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + P F AN + + G+++LLDAP Sbjct: 101 ENYPAYFQALEEERTIAANDAINDTRTQELSQPYLCVLGITSLLDAP------------- 147 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 I RL + E+ + E+ + E + + + Sbjct: 148 -------IWLEGRLVGVVC-HEHIGELRQWTLEEETFAGSIADFVTLAIEASERNVVQEA 199 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-- 504 + + +I E +S GI +I+ + I+ TN + ++ GY E++ K FT ++ Sbjct: 200 LRQSEAKFRAIFERSSIGIGLIDMKAQIVDTNPVLCEILGYSREELYAKRFTDYISIQKG 259 Query: 505 TPSVMNHYLTEI------------------LSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + ++EI + +E K+ L+ I + Sbjct: 260 DLKLYKQLVSEIGKNSGKTSRFGFQISKLEEQAVDKHRIEMERRCLHKDGSLVWTHISVS 319 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +P S+ + + DI+E K+ + KL +++ AE S K++FLA +SHE+RTPL A Sbjct: 320 VIPDSNGEPEFFLAMIEDITERKETELKLRASQEAAEAASRAKTEFLATMSHELRTPLNA 379 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G S++++ + G L N + EY + I SG +L ++ND+LD+SK+E GK L P+ Sbjct: 380 IMGLSQLLQQEIVGSL-NEKQNEYVSCIYSSGEHLLALINDILDLSKVEEGKEELLLSPL 438 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + + AI V+ A+EK + + +AD R +KQ+ LN+L+NAI FTP G Sbjct: 439 PVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLNLLTNAIKFTPVG 498 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + + V DTG+G+ + + +PF Q+ + + EGTGLGL L + Sbjct: 499 -NVSLVVKKVPQG-ITFTVSDTGIGIDPNQFQFLFEPFKQLDSRLNRQYEGTGLGLALTR 556 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + G + ST +G+ + P Sbjct: 557 KLARLHGGDVTVTSTLGEGSQFTLFLP 583 >gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis VL426] Length = 1342 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 461 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 520 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 521 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 580 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 581 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 640 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 641 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 696 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 697 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 756 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 757 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 816 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 817 LVELMGGQITVHSEEGKGSTFEFS 840 Score = 44.2 bits (103), Expect = 0.079, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 496 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 555 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 556 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 612 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 613 AMSQAKGDFLANMSHEIRTPMNA 635 Score = 42.3 bits (98), Expect = 0.38, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 449 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 508 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 509 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 562 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 563 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 621 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 622 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 669 >gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1302 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 186/406 (45%), Gaps = 13/406 (3%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + + + + + +V + ++EA +D I ++ Sbjct: 747 WNQQRALAVSGGSALALVLGIAWVTTLKRRVKKQTSLIRQQVDKEKQLIEAATDFIFTLD 806 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G S N + G+ ++I L + + LT + ++L+ Sbjct: 807 LQGNFTSFNSTCESITGFSRDEIKTMLVYDLLNKADAKLARLALTRRKTKAETKSLQSEI 866 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + K+ L + ++ L M DI+ K+ +L+ A+ AE + KS Sbjct: 867 I--RKDGSKLWVETSLRFLRTEGKVTGMFCIMRDITLRKKVHQELTRARDAAESNTKAKS 924 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHE+RTP+ +I + ++ + + +Y + I SG +L ++ND+LD Sbjct: 925 AFLATMSHELRTPMNGVISMANILLDTDL----DETQRDYTSTIRDSGESLLTLLNDILD 980 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705 +SK E+GK+++ + L E +++++SL+ A +K I + T+ ++ P +L D +K Sbjct: 981 LSKAEAGKLSIEPFELDLKELLNQSVSLLSTTAQQKNIQLETNVTDDTPTLLIGDAGRIK 1040 Query: 706 QIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQ 762 Q+ LN+ NAI FT G +I +S +N+ V + + DTGVG++ + +PF Q Sbjct: 1041 QVILNLTGNAIKFTEDGHVKINVSKLEDTNKHVNIRIEIEDTGVGISETAASRLFRPFEQ 1100 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S R GTGLGL ++K +V+ G+ + S KG+ Sbjct: 1101 ADGSHSRRFGGTGLGLAISKEIVELMDGEIGVDSVLGKGSTFWFTL 1146 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 27/265 (10%), Positives = 71/265 (26%), Gaps = 28/265 (10%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--- 141 F + +D G + G ++ M + D+ + + + L + Sbjct: 801 FIFTLDLQGNFTSFNSTCESITGFSRDEIKTMLVYDLLNK----ADAKLARLALTRRKTK 856 Query: 142 --TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 T ++ + +G+ + ++ + + + + +G F I+ + R Sbjct: 857 AETKSLQSEIIRKDGS--KLWVETSLRFLRTE-GKVTGM--FCIMRDITLRKKVHQELTR 911 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + K + + + M N + +D Sbjct: 912 ARDAAESNTKAKSAFLATMSHELRTPMN----GVISMANILLDTDLDETQRDYTSTIRDS 967 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 S + L + D + + + + L+ +S LS Sbjct: 968 G--ESLLTLLNDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLSTTAQQKNIQLETNVT 1025 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYA 344 + TP + + G + Sbjct: 1026 DDTPTLL--------IGDAGRIKQV 1042 >gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 765 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 121/508 (23%), Positives = 217/508 (42%), Gaps = 12/508 (2%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + ++ D+ GN+ Y N F L Y + I Sbjct: 255 IGEDVTEKRQYEINLRKFKSISDRANYGSATTDLHGNVTYINDYFAYLHGYSPDELIGKN 314 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + SD + + + + + M ++ Sbjct: 315 LSI-------FHSDGQLEEVHRVNEELMENGSYTNIEIWHTHKNGTTFPMLMSAVVMKDE 367 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + ++ + S++E +DGI II ++G+I NR + + Sbjct: 368 GRNPQYLSASAVDITHLKNIEDRIYESEKKYSSLVENGNDGIIII-QDGLIKYANRKMIE 426 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 + Y E+++ PF F+ ++ Y + D+ E + + L Sbjct: 427 MSEYSHEELIENPFIDFVSPKYIEIVKDRYQKRLNGEDIPSHYEIEIEANDDRTIPVDLS 486 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + I + DIS+WKQ K L +A+ AE+ + K++FLA VSHE+RTPL Sbjct: 487 VSIINYQGLLATMAILRDISDWKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNP 546 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ + G L N + +YA I ++G+ +L IVN ++D+ I K++L + Sbjct: 547 IIGFSDILVSGVAGEL-NEKQKKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCF 605 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + E + E L+ A +K+IL+ + I+AD ++I N++ NAI FTPSG Sbjct: 606 KVIEMIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSG 665 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G + I ++ V + V DTG+G+ + ++ +PF Q+ +S + +G GLGL L K Sbjct: 666 GHVSIH-AIQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVK 724 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 V G ++ S KG+ P+ Sbjct: 725 EYVKLQGGDIWVDSELGKGSTFTFTLPM 752 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 95/271 (35%), Gaps = 15/271 (5%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + G + Y N ++ K +D + + G + L + + +A + + Sbjct: 26 VIINPDGFITYTNKNWESFAKDNGLDPSKCSEGTNYLKICDEANGEHATGASIEAKGIID 85 Query: 393 CIAASARLHTIQW-----NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 I + ++ I++ + + + P K D + + K+ Sbjct: 86 VINGNKDIYKIEYPCHSPDEKRWFLLKATPLSK----VYPTDVLLQHINITDRKEVQIKL 141 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + Q ++LE ++ G ++ N + G+ E+I+ K + + Sbjct: 142 KNSEQQFRNVLENIRLISITLDTIGNLIFCNEYFLNITGWKKEEIIHKNWFELFVSHDIK 201 Query: 508 VMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563 + + T I + E L E+K+++ ++ K S D++E Sbjct: 202 SEINDMFRTTIKNNSYPTYYENEILTKNCEKKIIAWNNVVNKDQNDKILSISCIGEDVTE 261 Query: 564 WKQEKNKLSHAKKIAEKES--SHKSDFLARV 592 +Q + L K I+++ + S +D V Sbjct: 262 KRQYEINLRKFKSISDRANYGSATTDLHGNV 292 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 62/241 (25%), Gaps = 5/241 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D HG + I++ G ++IG L ++ + + + L ++ Sbjct: 286 TDLHGNVTYINDYFAYLHGYSPDELIGKNLSIFHSDGQLEEVHRVNEELMENGSYTNIEI 345 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 W P+ ++A+ + R + + +KK+S L Sbjct: 346 -WHTHKNGTTFPMLMSAVVMKDEGRNPQYLSASAV--DITHLKNIEDRIYESEKKYSSLV 402 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--AHKDDVLKTEKYPLLTSEE 266 E + ++ ++ + ++ + + + Sbjct: 403 ENGNDGIIIIQDGLIKYANRKMIEMSEYSHEELIENPFIDFVSPKYIEIVKDRYQKRLNG 462 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 +P + + T N + ++ S T Sbjct: 463 EDIPSHYEIEIEANDDRTIPVDLSVSIINYQGLLATMAILRDISDWKQAKAALIYARLTA 522 Query: 327 D 327 + Sbjct: 523 E 523 >gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus silvanus DSM 9946] Length = 827 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 106/619 (17%), Positives = 217/619 (35%), Gaps = 64/619 (10%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + V K + + +++ + + +T+ Sbjct: 273 QGSSDPMAQAARLRRPVLATKGQLPPWVESESMAFVP--ITAFSPTFLEPGKPAQTQ-TD 329 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + + Q + LS + Sbjct: 330 MEVLGVVAVDHGPKGTEVAVEDLWYVQLL--CNTAGVAIKNARVYAEQARLSEALALERS 387 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E +++ V +AN + + L Sbjct: 388 KLTEALEQMGDGVIVLEEDR-GFANRLAREALGLEREVGLGDLP--DYLYP--------- 435 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 A R ++ + E + + E Sbjct: 436 --------------ALEGRELEVELAGRAFSVL---------GTREGRLRVLVLHEITQR 472 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ + + +IL+A D + ++N+EG I A + P + L + + Sbjct: 473 KLAEQAIRESEARNRAILQAIPDMLFVVNQEGRIQEYKSAREEPLSVPGQFFLGRTLSEV 532 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 L + L L+ E + +L ++ L + D Sbjct: 533 LPPEAANRAMEALHTALTQGSLLFFEYQIRT---DGRLRDYEGRAVQIAPQQG-LLIIRD 588 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ K + KS+F+A VSHE+RTPL AI+GF+E++ + G + Sbjct: 589 VTPQKDAE--------------RIKSEFIAAVSHELRTPLAAIMGFAELLTS---GEIPL 631 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E+ I +G + ++V++LLD S++E+G+ ++ PV L+E + A Sbjct: 632 EEGQEFLRIIYDNGRRLKNMVDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQ 691 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 ++ +P + AD + Q+ N+LSNA FTP GG++ + + + + Sbjct: 692 LSQVEFHREIPP-LPPVEADPDRIGQVMGNLLSNAFKFTPKGGRVTLRAMLE-GDSLKIE 749 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ E + + +G+ ++ GTGLGL ++KA+V+A+ G+ ++ S K Sbjct: 750 VEDTGPGIPESERSRLFQRYGRTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGK 809 Query: 801 GTLIEIIFPLYDTSHPHDC 819 GT + PL+ + P Sbjct: 810 GTTFSLTLPLH-AAQPQPA 827 >gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium Y4I] Length = 985 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 111/598 (18%), Positives = 213/598 (35%), Gaps = 39/598 (6%) Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + P + L F T + A Sbjct: 249 SWQLAARPAGGWQAQPGNLWQLRLALLAAGTLIVFPTFLAGRLSAARQTVIGQLRRREAE 308 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDA 372 + V + + GN + L + + ++ L Sbjct: 309 LEAVSRRLEIAVKTSRVGIWECDAGNKRVSWDSRMHELYGVPREQGPLAGSAWIAKLHPQ 368 Query: 373 PKLS-----------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM---TFIPF 418 + +N + D + A + S + + Sbjct: 369 DRDRVVKSLEAAERSKSNFASEFRILLDDGSVKHIRALASPFTDTQGRSWMIGVNWNVSE 428 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKME----------IEVMQLCSILEATSDGIAII 468 + + + + + + KR +E E+ +L + + SD I + Sbjct: 429 DVRLREELIHANQALSERNTELKEGKRALEDAHAELQKQQAELHRLSLVAKHASDSIILT 488 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEK 527 + IL N A ++ GY + + + + L+ + + + +R Sbjct: 489 DASRKILWVNDAFTRATGYSAGEAIGRTPSDLLDGPDTDLSVVREMNRHKDGGIR--YHN 546 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 L TK + + I + + DI+ KQ + +L+ AK AE Sbjct: 547 EVLNYTKSGEEVWFDTNIVPVTGADGEVDLIIGIERDITRSKQRERELAEAKLAAEHADR 606 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ IIG ++++ + I S +L I+ND Sbjct: 607 AKSEFLANMSHEIRTPMNGIIGMADLLAEAELTADD----QQNVETIRSSAQALLKIIND 662 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD+S++E+GK + E +L + + A L + A EK + ++ S+AN +P + D Sbjct: 663 ILDLSRLEAGKFAISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLPDRLHGDDG 722 Query: 703 SVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI +N++ NA+ FTP G + +S +++ V D+G+G++ + + F Sbjct: 723 RLRQILVNLIGNAVKFTPDGKIAVRVSQAGEDPCRLVVEVEDSGIGISETQAKHIFDRFT 782 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 Q + GTGLGL ++ + G + S P KG+ + + S D Sbjct: 783 QADAATTKAFGGTGLGLTISSMLAKRMGGGITVQSQPGKGSCFRLELQMVPASQAVDA 840 Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 25/257 (9%), Positives = 60/257 (23%), Gaps = 20/257 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146 DA + +++ + G A + IG D+ D D + ++ + Sbjct: 488 TDASRKILWVNDAFTRATGYSAGEAIGRTPSDLLDGPDTDLSVVREMNRHKDGGIRYHNE 547 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G V D +P+ + E GI H Sbjct: 548 VLNYTKSGE--EVWFDTNIVPVTGADGEVD--LIIGIERDITRSKQRERELAEAKLAAEH 603 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 K + + + M + ++ D + Sbjct: 604 ADRAKSEFLANMSHEIRTPMN----GIIGMADLLA--EAELTADDQQNVETIRSSAQALL 657 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + D + ++ + + + ++G ++ Sbjct: 658 KIINDILDLSRLEAGKF-------AISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYA 710 Query: 327 DKCPIPFFVYSHGNLFY 343 + P G L Sbjct: 711 NGLPDRLH-GDDGRLRQ 726 >gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1175 Score = 363 bits (932), Expect = 7e-98, Method: Composition-based stats. Identities = 94/571 (16%), Positives = 200/571 (35%), Gaps = 53/571 (9%) Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF- 334 H + + + + +D + Sbjct: 94 HEVKGLDLGAEDFVHKPFHEGVLLARVGQILRRLQAEEQLRTSRESHRMLLDSIETQVWH 153 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + N + + + + L ++ + R ++ I Sbjct: 154 LTDEHTYGAVNRAHADFFGFSPSEI--ANRDIDQFLPEGMVAAIRKGNREVFSRKEQIHI 211 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + ++ K ++ + K+++ +L Sbjct: 212 E-----EWVSNASGEPRLLSITKTPKIDEQGNVDYVVCSAEDMTAQWKATEKLKVSEEKL 266 Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNH 511 SIL D + I+ + L + + KL+G + P F + Sbjct: 267 SSILNNMKDVVWSISWPDLRHLYLSPSSEKLYGISAHEFYENPTLFKDVTHPEDRHLTKK 326 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567 + ++L + + ++ + K + + D++E + Sbjct: 327 AVEQLLEEGEAV---RECRIIRPDGSIVWINDTSKMIYDDNQQPARVDGVTRDVTELVKA 383 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+ AE+ + KSDFLA +SHEIRTP+ +IG + ++ + + YA Sbjct: 384 RQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDL----DSEQQHYA 439 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + S +L ++ND+LD SKIE+G++++ L+ + + ++ + A EK + + Sbjct: 440 RTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELI 499 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIS----------------- 728 S N+P + D ++QI +N++ NA+ FT G +I +S Sbjct: 500 CSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVDQRSEVSDQPAN 559 Query: 729 -TTHTSNE-----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +H E+ ++RDTG+G+ + + + F Q+ S + GTGL Sbjct: 560 RLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDASTTRKFGGTGL 619 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GL +++ + + G + S +G+ Sbjct: 620 GLAISRQLAEMMGGTAGLESVEDQGSTFWFT 650 Score = 45.0 bits (105), Expect = 0.052, Method: Composition-based stats. Identities = 21/258 (8%), Positives = 57/258 (22%), Gaps = 19/258 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWY 144 W++ ++ G ++ + P + + K + + Sbjct: 151 VWHLTDEHTYGAVNRAHADFFGFSPSEIANRDIDQFL------PEGMVAAIRKGNREVFS 204 Query: 145 GKTTL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 K + W + + + P K Sbjct: 205 RKEQIHIEEWVSNASGEPRLLSITKTPKIDEQGNVDYV--VCSAEDMTAQWKATEKLKVS 262 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVL 254 ++K S + K SP + +L + H +D Sbjct: 263 EEKLSSILNNMKDVVWSISWPDLRHLYLSPSSEKLYGISAHEFYENPTLFKDVTHPEDRH 322 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 T+K EE + + + + +++++ + Sbjct: 323 LTKKAVEQLLEEGEAVRECRIIRPDGSIVWINDTSKMIYDDNQQPARVDGVTRDVTELVK 382 Query: 315 FDEGENLTPETVDKCPIP 332 + E ++ Sbjct: 383 ARQDLIQAKEHAEEATRA 400 >gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 763 Score = 363 bits (932), Expect = 8e-98, Method: Composition-based stats. Identities = 113/499 (22%), Positives = 204/499 (40%), Gaps = 22/499 (4%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + ++ GN+ NP LT + + + L + Sbjct: 18 EERDHLQIILESIGDGIITTDMEGNISMMNPVAEKLTGWSREEALGK--HLYEVFRIIDN 75 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + ++ R R + + + ++ + + Sbjct: 76 TSKQPLENPFDNVFTRGLSQGLLRNSALLDRDGETRFASACASPIIDKNQKRAGMVVVFR 135 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + N E E+ L +L+ +S+ I I + +GI+ N ++L GY +++ + Sbjct: 136 DIDRIKKN----EDEIRCLSWVLQLSSNAIIIFDIQGIVQFINSRFTQLTGYEAYEVVNR 191 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 + N + + L E E S+ + Sbjct: 192 NLRLI---NNLPLDVEKIFARLRAGEEWHDEVFFHNRQLEPCWWSIYCTAVRDEEDKITS 248 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y + DISE KQ + L AK+ AE + K++FLA +SHEIRTPL AIIG + + Sbjct: 249 YCSIIQDISEHKQAEENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMT----SL 304 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P E I +G+ +L I++++LD SKIE+GK+ + +L E + + I+ Sbjct: 305 SLLSNPEPDQKENLEIIKMAGDTLLSIIDNILDFSKIEAGKLTVEKINFNLHELIEKNIT 364 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + + A EK +L+ IP ++ D ++Q+ N++ NAI FT G ++ + Sbjct: 365 IHKARAQEKGLLLLYYIDPAIPVQVNGDPYRLQQVFNNLIGNAIKFTDHG-EVEVRLKLL 423 Query: 733 S--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ ++L V DTG G+T + EK + F Q +S GTGLGL ++K +V+ Sbjct: 424 DIFDDHIVLQASVADTGRGITAGQQEKMFESFYQGDSSISRTYGGTGLGLNISKKIVEMM 483 Query: 789 MGKFYIFSTPAKGTLIEII 807 GK ++ S G+ Sbjct: 484 QGKIWLESDIESGSTFYFT 502 Score = 90.5 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 33/222 (14%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ E L ILE+ DGI + EG I N KL G+ E+ L K Sbjct: 14 SRILEERDHLQIILESIGDGIITTDMEGNISMMNPVAEKLTGWSREEALGKHLYEVFRII 73 Query: 505 T---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557 + + + + L Q L + + ++ + + + + Sbjct: 74 DNTSKQPLENPFDNVFTRGLSQGLLRNSALLDRDGETRFASACASPIIDKNQKRAGMVVV 133 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI K+ ++++ + + S+ F I G + I ++ Sbjct: 134 FRDIDRIKKNEDEIRCLSWVLQLSSNAIIIF-------------DIQGIVQFINSRFTQL 180 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDL-LD----ISKIESGK 654 G Y N L ++N+L LD +++ +G+ Sbjct: 181 TGYEAY--------EVVNRNLRLINNLPLDVEKIFARLRAGE 214 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 75/287 (26%), Gaps = 25/287 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---IDPNNHIGDLLKRQNTWYG 145 D G + ++ K G + +G L +V I+ P + D + + G Sbjct: 37 TDMEGNISMMNPVAEKLTGWSREEALGKHLYEVFRIIDNTSKQPLENPFDNVFTRGLSQG 96 Query: 146 KTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 L +G + A PI +N++ +G + + L Sbjct: 97 LLRNSALLDRDGETRFAS--ACASPIIDKNQKRAGM--VVVFRDIDRIKKNEDEIRCLSW 152 Query: 203 KFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + +I+ + + ++ R +++L L+ Sbjct: 153 VLQLSSNAIIIFDIQGIVQFINSRFTQLTGYEAYEVVNRNLRLINNLPLDVEKIFARLRA 212 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + ++ FH L Y +++ + Y S S + Sbjct: 213 GEE---------WHDEVFFHNRQLEPCWWSIYCTAVRDEEDKITSYCSIIQDISEHKQAE 263 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 E E + + + S+ + Sbjct: 264 ENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMTSLSLLSNP 310 >gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 582 Score = 363 bits (931), Expect = 8e-98, Method: Composition-based stats. Identities = 94/435 (21%), Positives = 188/435 (43%), Gaps = 34/435 (7%) Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + R+ + N +P ++ E E++ ++ Sbjct: 173 RIARGITRPIE-RITRVARQMANQQYAARVPEAGNDEVGELARTINRMAENLQIQMQH-- 229 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +L +LE G+ ++++ G I NR+ + GY ++L K + L+ Sbjct: 230 IRENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSY---LDAGFQ 286 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564 L + + R + + + +E++L + + + +HDI+ Sbjct: 287 LEFTALLADAIETHTR--VREELMLHFPQEQILEVHVSPIVQGDGQRKGVLVVLHDITAV 344 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + +S+F+A VSHE++TP+ A+ GF+E + Sbjct: 345 RRLE--------------RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMAR 388 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I + + ++ D+L++SKIES ++ L F PV ++ V +I +++ A +K I Sbjct: 389 SFLQIIYDESDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHI 448 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEV 737 + + N + I AD ++QI +N+LSN I +TP GG++ I NE + Sbjct: 449 TLESCVENEL-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERM 507 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +R+ DTG+G+ +L + + F ++ ++ GTGLGL + K + + + G + S Sbjct: 508 RIRISDTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESE 567 Query: 798 PAKGTLIEIIFPLYD 812 KGT I P+ Sbjct: 568 AGKGTTFNIELPVIQ 582 Score = 43.1 bits (100), Expect = 0.23, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 15/168 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + ++ +G + +++ D ++ + D ++ T + Sbjct: 251 VDQRGTITLVNRSAEDILGYSSHELLNKSYLD--AGFQLEFTALLADAIETH-TRVREEL 307 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +++ PI + + G ++H +RL++ S Sbjct: 308 MLHF---PQEQILEVHVSPIVQGDGQRKGV--LVVLHDITAV-------RRLERIRSEFV 355 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 F++ L K S + + D L Sbjct: 356 ANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNR 403 >gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1511 Score = 363 bits (931), Expect = 8e-98, Method: Composition-based stats. Identities = 125/728 (17%), Positives = 246/728 (33%), Gaps = 98/728 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D ++ ++ + + ++ ++ + + L+ W G+ Sbjct: 365 TDRKTRIRWVNPQFERVTQYSLAEVKRRDPNVLASGATPREVYDEMRRSLRAGQPWSGEF 424 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G++ + + ++ P+ G+ G L + S Sbjct: 425 VNRRKDGSHYHARVAIS--PVNDDKGNLLGYVG-------------------LQEDVSEY 463 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + S + + + + + ++++ Sbjct: 464 KRLLSRMESQLRLEAGLTHFAASFKNEFDPDRLA-------------------------- 497 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 +L E ++L F A +++ Sbjct: 498 ALALNELVRFLSLPYAAVHVRCRESSAQVLARFGGDRPPGDDISGACRPLVDDVIA---- 553 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G F S L + SV A GL+ + P +A+ + + Sbjct: 554 ----------SGRPF----SLRDLPETASVALAGGAAGLTEIRLLPLGDGQSAVGALEI- 598 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 L + + L E + + + ++ + Sbjct: 599 ----------GLLRELSEADQRYL---------DKARAELALALKLALDIGERVRAQQAL 639 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNT 505 + +L+ + + + L NRA + FG E+++ K L + Sbjct: 640 ADQNAFQQVLLDTIPNPVFYKGADTRFLGFNRAYEETFGVRREELVGKRVLDLDYLPEAD 699 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563 E ++ E + + + T DISE Sbjct: 700 RLAYQREDEEAIAAGGSVRREMRIPFADGAMHETLYYVSGFRRADGSPGGLVGTFVDISE 759 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + L+ AK+ A + + KSDFLA +SHEIRTP+ AI+G S + P R Sbjct: 760 QKAVERALAAAKEAAVEATLLKSDFLANMSHEIRTPMNAIVGLSHLALTTELTP----RQ 815 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y I ++ +L I+ND+LD SKIE+GK+++ L + +L++ A K Sbjct: 816 RDYMGKIQQASQHLLGIINDILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKG 875 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VIL 739 + + A ++P+ ++ D + QI +N +NA+ FT +G I + E + Sbjct: 876 LELLFDVAADVPQDLVGDPLRLGQILVNYANNAVKFTEAGEVGIRVRLIAEDGGEAVLRF 935 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+T ++ + + F Q S R GTGLGL ++K + + G+ + STP Sbjct: 936 EVRDTGIGLTQEQIARLFQSFSQADASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPG 995 Query: 800 KGTLIEII 807 G+ Sbjct: 996 AGSTFWFT 1003 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 45/379 (11%), Positives = 95/379 (25%), Gaps = 34/379 (8%) Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--- 297 ++ Y V++ TSE ++ + F + G Sbjct: 116 AAEGTYLIEAGGVIRIHDTEGSTSEGLNVAFRPYFRQAMAGRPNIYAAVGKQSQERGLYY 175 Query: 298 ---ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 L + L + G F A L Sbjct: 176 AAPVRDGALPTSPVIGVIMTKIGAAFLDALLAGSGSQAVLLSPEGVAFAATRP-EWLYAV 234 Query: 355 KSVDDIEIAGGLST--LLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNR--E 408 + A P +D A S ++ W+ Sbjct: 235 APAATEGKPAAMDRASRFGDVFKGRQAATLPFSPDQDTADIAGAAWSLATQSVDWDDPEG 294 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV-----------DTRINKRKMEIEVMQLCSI 457 N + + + G+ R + + L Sbjct: 295 NWTLVVLQDTATWFPPAKRLLTAGLTAAGTLLVCLTLVALDRVRQRRARAAARFRTLGVA 354 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 +E + + + +R+ I N ++ Y + ++ R+ V TP + + L Sbjct: 355 MEVSPLAVVVTDRKTRIRWVNPQFERVTQYSLAEVKRRDPNVLASGATPREVYDEMRRSL 414 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK----QEKN 569 + + K+ R+ I + Y D+SE+K + ++ Sbjct: 415 RAGQPWSG--EFVNRRKDGSHYHARVAISPVNDDKGNLLGYVGLQEDVSEYKRLLSRMES 472 Query: 570 KLSHAKKIAEKESSHKSDF 588 +L + +S K++F Sbjct: 473 QLRLEAGLTHFAASFKNEF 491 Score = 45.8 bits (107), Expect = 0.031, Method: Composition-based stats. Identities = 33/419 (7%), Positives = 94/419 (22%), Gaps = 51/419 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNT 142 + A + +T G +++G R+ D+ + D + + + Sbjct: 657 VFYKGADTRFLGFNRAYEETFGVRREELVGKRVLDLDYLPEADRLAYQREDEEAIAAGGS 716 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G ++ + G G + Sbjct: 717 VRREMRIPFADGAMHETLYYVSG--FRRADGSPGGL--VGTFVDISEQKAVERALAAAKE 772 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSLTEYYAHKDDV 253 +K + + + R ++ + + + H + Sbjct: 773 AAVEATLLKSDFLANMSHEIRTPMNAIVGLSHLALTTELTPRQRDYMGKIQQASQHLLGI 832 Query: 254 ----------------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++ + L E+ + + Q+ Sbjct: 833 INDILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVG 892 Query: 298 ESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLL 351 + +++ N+ E + + + L Sbjct: 893 DPLRLGQILVNYANNAVKFTEAGEVGIRVRLIAEDGGEAVLRFEVRDTGIGLTQEQIARL 952 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD---------RTCIAASARLHT 402 + S D + L + + L R + + +ARL Sbjct: 953 FQSFSQAD----ASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPGAGSTFWFTARLRK 1008 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + L + + +N + + + + + S+LEA Sbjct: 1009 SRKRHRVLLPDPDLRGRRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSVLEAA 1067 >gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 1053 Score = 363 bits (931), Expect = 8e-98, Method: Composition-based stats. Identities = 130/747 (17%), Positives = 249/747 (33%), Gaps = 60/747 (8%) Query: 92 HGY---LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 G LK ++ + + +++G L + + + + K T + Sbjct: 190 DGRDFILKALNPAAERIVHLTGAQVVGKTLLTLFPNMGSTVLPAALCRVWKTGRTEHLAP 249 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + + +P + E + + +++F L Sbjct: 250 FYYQDDIRQGWRENHIYKIP----SGEI-----VALFDDVTERKQIEDSLRESEERFRVL 300 Query: 208 HEIKKGHS-------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKY 259 E + E K+ + + + + ++ + + T Sbjct: 301 FENIRDGVFVHPMITPSEPGKFAMVNPSACDILGYTQEELLGMGPRELDDAESSVTYIPE 360 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFD 316 + E E + + S Sbjct: 361 AMKRLMEDGCVLFEAVQRDRKGNRIPVEVNANIVELSGRPYIVSSVRDITLRKQHENKLL 420 Query: 317 EGENLTPETVDKCPIPFFVYS---HGNLFY--ANPSFLLLTKYKSVDDIEIAGG--LSTL 369 E D FV G+ Y N +LT K+ + + + Sbjct: 421 ESTQFLKSIYDGVNNSVFVVDVQQDGSYRYKGINRMHEILTGIKNEEITGKSPDEIIDAP 480 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + +A + + + Sbjct: 481 FAESVIRRYDACIQSGSTIQYEELLPFK----------GRETYWETVLTPVRDNVGHIYR 530 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 G + +I+++++ +L +E + + I + G I N ++L GY V Sbjct: 531 IIGTSTDITKRKISEQRLR----KLSVAVEQSPAVVVITDYMGNIEYVNPKFTQLTGYTV 586 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + + TP + L + + K + +I + Sbjct: 587 REAVGNNPNILQSGLTPRETFYELWDTILSG--GVWHGEFYNRKKNGDIYIESAVISPIF 644 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + DI+E K+ ++L AK+ AE+ K+ FLA +SHEIRTP+ I+G Sbjct: 645 NKEGSITNFVAVKEDITEKKKLWSELIAAKEKAEESDRLKTAFLANISHEIRTPMNGILG 704 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE++K L EY N I++SG +L ++N+L+DIS+IESG L S++ Sbjct: 705 FSELLKEPH---LSGEEQTEYINLINQSGQRMLHLINELVDISRIESGDTFLQITETSIN 761 Query: 666 EAVSEAISLVQLYANEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + + + + A +K +L ++ I D V QI N++ NA+ FT G Sbjct: 762 RLMHDIYAFFRPEAAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNLVQNALKFTTEGS 821 Query: 724 QIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + +T N+ + V D+G + + EK F Q+ NS R EG GLGL ++K Sbjct: 822 ---VDFRYTLKNDCLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYEGAGLGLSISK 878 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 A ++ GK ++ S +G P Sbjct: 879 AYIEMLGGKIWVESIEGRGNRFVFTLP 905 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 61/528 (11%), Positives = 150/528 (28%), Gaps = 43/528 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGKT 147 A +K+ L +G +++ + + D + + + ++ T +T Sbjct: 61 ADSVIKDADSALCSLLGYTPDELLNRKWS-ILYTTDADYDYVGDELHRQIRGYGTGTIET 119 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G V + + PI S + GF IV + D +++ L Sbjct: 120 AMQCKNGCIRNVLV--SLYPINSAD-LLLGFT--LIVRDITEWKKSEKQIQESDNRYAAL 174 Query: 208 HEIKKGHSSVEKE---KYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEK 258 E +V D + P R+ + + L + + + Sbjct: 175 IENIDTGVAVYDAVDDGRDFILKALNPAAERIVHLTGAQVVGKTLLTLFPNMGSTVLPAA 234 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + ++ ++ Q ++ + + + + + + E Sbjct: 235 LCRVWKTGRTEHLAPFYYQDDIRQGWRENHIYKIPSGEIVAL-FDDVTERKQIEDSLRES 293 Query: 319 ENLTPETVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + FV+ G NPS + Y + + G LD Sbjct: 294 EERFRVLFENIRDGVFVHPMITPSEPGKFAMVNPSACDILGYTQEELL---GMGPRELDD 350 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + S + + D L + + Sbjct: 351 AESSVTYIPEAMKRLMEDGCV------LFEAVQRDRKGNRIPVEVNANIVELSGRPYIVS 404 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILS--TNRAVSKLFGYP 488 + + ++ K+ L SI + ++ + +++ ++G NR L G Sbjct: 405 SVRDITLRKQHENKLLESTQFLKSIYDGVNNSVFVVDVQQDGSYRYKGINRMHEILTGIK 464 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 E+I K ++ + + E++ +E ++ + + Sbjct: 465 NEEITGKSPDEIIDAPFAESVIRRYDACIQSGSTIQYEELLPFKGRETYWETV-LTPVRD 523 Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARV 592 T DI++ K + +L E+ +D++ + Sbjct: 524 NVGHIYRIIGTSTDITKRKISEQRLRKLSVAVEQSPAVVVITDYMGNI 571 Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats. Identities = 39/385 (10%), Positives = 108/385 (28%), Gaps = 42/385 (10%) Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-TVDKCPIPFFVYSHG 339 T+ + ++ ++ N + + P + + Sbjct: 4 EVKTRDELITEIEELRRQCSSLEDAINAQRAGWSSCMYRESFVQCVFRELPTGTGLIADS 63 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + A+ + L Y + + + L D + R T Sbjct: 64 VIKDADSALCSLLGYTPDELLNRKWSI--LYTTDADYDYVGDELHRQIRGYGTGT----I 117 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 +Q + + N + I + + + ++++++ + +++E Sbjct: 118 ETAMQCKNGCIRNVLVSLYPI-NSADLLLGFTLIVRDITEWKKSEKQIQESDNRYAALIE 176 Query: 460 ATSDGIAIINR--EGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 G+A+ + +G + + N A ++ ++ K +V+ L Sbjct: 177 NIDTGVAVYDAVDDGRDFILKALNPAAERIVHLTGAQVVGKTLLTLFPNMGSTVLPAALC 236 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + L + I S D++E KQ ++ L + Sbjct: 237 RVWKTGRTEHLAPFYYQDDIRQGWRENHIYKIP---SGEIVALFDDVTERKQIEDSLRES 293 Query: 575 KKIAEKESSHKSDFLARVSHEIRTP--------LTA----IIGFSEVIKNQRFGPLGNPR 622 ++ + D H + TP + I+G+++ + G Sbjct: 294 EERFRVLFENIRD--GVFVHPMITPSEPGKFAMVNPSACDILGYTQ---EELLGMGPRE- 347 Query: 623 YIEYANYIDRSG----NLVLDIVND 643 + + S + ++ D Sbjct: 348 ----LDDAESSVTYIPEAMKRLMED 368 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 41/315 (13%), Positives = 79/315 (25%), Gaps = 28/315 (8%) Query: 85 FTWNIDAHGYLKE--ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQN 141 F ++ G + I+ G ++ G ++ D + D ++ + Sbjct: 438 FVVDVQQDGSYRYKGINRMHEILTGIKNEEITGKSPDEIIDAPFAESVIRRYDACIQSGS 497 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T + P +G Y L P+ +R G ++L Sbjct: 498 TIQYEEL-LPFKGRETYWETVL--TPVRDNVGHI--YRIIGTSTDITKRKISEQRLRKL- 551 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKY 259 S E + +I L + + Y Sbjct: 552 ---SVAVEQSPAVVVITDYMGNIEYVNPKFTQLTGYTVREAVGNNPNILQSGLTPRETFY 608 Query: 260 PLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 L + S +F N + Y + + N +++ + + Sbjct: 609 ELWDTILSGGVWHGEFYNRKKNGDIYIESAVISPIFNKEGSITNFVAVKEDITEKKKLWS 668 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E ++ F AN S + T + G S LL P LS Sbjct: 669 ELIAAKEKAEES------DRLKTAFLANISHEIRTP------MNGILGFSELLKEPHLSG 716 Query: 378 NNAIKPVMLYRSDRT 392 + + L Sbjct: 717 EEQTEYINLINQSGQ 731 >gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V51] Length = 1331 Score = 363 bits (931), Expect = 8e-98, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.084, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus 16] Length = 1594 Score = 363 bits (931), Expect = 9e-98, Method: Composition-based stats. Identities = 132/779 (16%), Positives = 271/779 (34%), Gaps = 68/779 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148 + ++ G +++G C D + + D + Q + Sbjct: 437 PDLPIIFANKAFEMQTGYSRQEVLGKN-CRFLQNDDRDQKGIDQLRDAIANQTSCSVVIR 495 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL------------ 196 + +GT Y +L P+++ E + F GI A Sbjct: 496 NYRKDGTLFYN--NLKIDPVFNEQGEMTHF--IGIQTDVTEMKRREAENTTKLEQEIARR 551 Query: 197 ---GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKD 251 + + + + + + V +K I + R ++++ Sbjct: 552 TEEVRESETRLRTVFDTALDGTVVIDDKGIIIDVNRSTELIFGRDRDELIGENVAILMPA 611 Query: 252 DVLKTEKYP----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + T ++ + + ++ + + ++ ++ Sbjct: 612 KFANKHDEYIQTFMRTGDKKLIGQPRQVEGLHKSGRVFPIEVSVGEAKVGDTQVFVGVVK 671 Query: 308 HPSLSAYFDEGENLT-----------PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK 355 ++ E L + + V G N + Y Sbjct: 672 DITVQEETKARETLLQNELFERELVYRAAFSQAAVGICRVALDGRFIEVNDKMCQIFGYS 731 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + G D D N + ++ + + + + + + A T Sbjct: 732 EEALLSMHFG-----DVTHPEDLNESQQMVDDLIEGLQRSFTMDKRYLNKSGDTFWA-TL 785 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSI-LEATSDGI--AII 468 N+ + + + + ++++ L + L + + GI + Sbjct: 786 SVSAVTNEEEQPKYFVAVVEDITKRKNIEKELRSAKTARDGLLRGMRLASDAGGICNWAL 845 Query: 469 NREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 N + L + ++ L+G + + + L + S E L E Sbjct: 846 NVDTGALKWDDSMYTLYGVERNKPLHYEDWERSLHPDDFSYATKAFKESLESKEVFNAEF 905 Query: 528 ITLG-STKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + T + + + + S DI++ K + L A++ + Sbjct: 906 RIINQKTNQTRWVKAAGDVVFDKESGDKMVFGINLDITDEKDAQAALERETLSAKQANEA 965 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTP+ +IG ++++ + + I S +L+I+ND+ Sbjct: 966 KSRFLATMSHEIRTPMNGVIGMVDLLRETNLSR----DQVNMVSTIRDSSFSLLEIINDI 1021 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD SKIESG+M L V++ V + + + + A++K + + +N+P +L D Sbjct: 1022 LDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAHQKDVGLYLEVEDNLPESLLLDPVR 1081 Query: 704 VKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 +Q+ LN+L NAI FT G + + +T E+ + V D GVGMT +LE+ KPF Sbjct: 1082 TRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTE-GELRIAVEDNGVGMTQDQLERLFKPF 1140 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 Q S + GTGLGL ++K+ V+ G+ + S G+ P+ ++ DC Sbjct: 1141 TQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTSKHHHGSRFTFTIPVEVSNS--DC 1197 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 44/430 (10%), Positives = 116/430 (26%), Gaps = 40/430 (9%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 E N T QE T + T + + T ID G + +++ G Sbjct: 537 EAENTTKLEQEIARRTEEVRESETRLRTVFDTALDGTVVIDDKGIIIDVNRSTELIFGRD 596 Query: 110 AFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTL---WPIEGTNLYVPIDLA 164 ++IG + + + ++ I ++ + G+ G + + + Sbjct: 597 RDELIGENVAILMPAKFANKHDEYIQTFMRTGDKKLIGQPRQVEGLHKSGRVFPIEVSVG 656 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK--- 221 + G+V V + +A L + + + S Sbjct: 657 EAKVGDTQ------VFVGVVKDITVQEETKARETLLQNELFERELVYRAAFSQAAVGICR 710 Query: 222 ----YDIFSQQSPPPHLRMKNKVSSLTEY---YAHKDDVLKTEKY--PLLTSEESSLPEQ 272 + ++ + L+ + H +D+ ++++ L+ + S Sbjct: 711 VALDGRFIEVNDKMCQIFGYSEEALLSMHFGDVTHPEDLNESQQMVDDLIEGLQRSFTMD 770 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + + + + + N ++ +++ + ++ D Sbjct: 771 KRYLNKSGDTFWATLSVSAVTNEEEQPKYFVAVVEDITKRKNIEKELRSAKTARDGLLRG 830 Query: 333 F-FVYSHGNL-----------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 G + + S L + + +L A Sbjct: 831 MRLASDAGGICNWALNVDTGALKWDDSMYTLYGVERNKPLHYEDWERSLHPDDFSYATKA 890 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 K S + +A I + + ++ + GI + D Sbjct: 891 FKE-----SLESKEVFNAEFRIINQKTNQTRWVKAAGDVVFDKESGDKMVFGINLDITDE 945 Query: 441 RINKRKMEIE 450 + + +E E Sbjct: 946 KDAQAALERE 955 >gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 707 Score = 363 bits (931), Expect = 9e-98, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 183/371 (49%), Gaps = 8/371 (2%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R+ ++++ + IL++ + + + + E + N+A K + I K + Sbjct: 344 RLAEQELRASEYEKKFILDSLEEIVVLRDPEFNVRWANQAALK--NRDLLMIENKEKALD 401 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + N E+ + + LL L+ I + Y T + Sbjct: 402 IPVNDRKTP----QELQLPGAPIWTDHEFTSPEGKTWLLRLKPICGETGNIIAYLETGVE 457 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K+ + +L AK+ AE + KS+FLA +SHE+RTPL +IIGFS+++ ++ +G L N Sbjct: 458 ITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVYGEL-N 516 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R ++ I SG +L+++N++LD+SK+E+G LH+ L + +E ++ +A Sbjct: 517 ARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDMLFPFAA 576 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + ++P I D + Q+ N+++NA+ F+ + + + +N + + Sbjct: 577 SKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKAS-QNNNFIEVS 635 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G+G+ + +K KPF QI +S + +GTGLGL L K +V + G + S K Sbjct: 636 VSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFKSEVGK 695 Query: 801 GTLIEIIFPLY 811 G+ PL+ Sbjct: 696 GSTFGFSIPLH 706 >gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)] Length = 1342 Score = 363 bits (931), Expect = 9e-98, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 461 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 520 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 521 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 580 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 581 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 640 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 641 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 696 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 697 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 756 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 757 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 816 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 817 LVELMGGQITVHSEEGKGSTFEFS 840 Score = 44.2 bits (103), Expect = 0.087, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 496 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 555 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 556 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 612 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 613 AMSQAKGDFLANMSHEIRTPMNA 635 Score = 41.9 bits (97), Expect = 0.42, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 449 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 508 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 509 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 562 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 563 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 621 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 622 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 669 >gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946] Length = 2035 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 122/602 (20%), Positives = 230/602 (38%), Gaps = 51/602 (8%) Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---- 294 V T+ H +K E PL+ ++ + + + T + Sbjct: 951 HVIGKTDMNMHLAFNVKKEWEPLVGILNKAIAAIPPEELQQILKRWGPEDIDTPFDMTLF 1010 Query: 295 NSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 SF L+ A + ++ D I G + Y + + Sbjct: 1011 LEVVSFALLALIALFYWNYLLKRQVASKTAELSSLLKSFDAHVIASKTDLKGVITYVSDA 1070 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F ++ YK + + G + + +D + + + A R+ Sbjct: 1071 FCQISGYKREELM----GKNHRISRHPDNDAKIYEEMWAVITHGG--AWKGRIKNKTKEG 1124 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--------------RINKRKMEIEVMQ 453 + + ++ + + + I + + + + Sbjct: 1125 G-YYWVDSVIEQELDASGKVVGYAAIRHDVTAHVELEELSEKLESIVEKRTQDLAFLNKE 1183 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +I ++TS GI ++ +E +I+ N+ + ++ GY + + L + ++ + Y Sbjct: 1184 QQAIFDSTSVGIVLL-KERLIVQCNKRIDEMLGYKIGEQLNQSTDIWY-----REIPDYQ 1237 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNK 570 + + + + K+ L R+ I L + + DIS K+ Sbjct: 1238 SVYEQVWHGEVVRFEHRLMRKDGTLFWARLSGRAIDYLDKEKGVVVVVEDISTEKEALEA 1297 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + AK +AE+ + KS FLA +SHEIRTP+ AIIG + + + Y I Sbjct: 1298 IQRAKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTELSN----QQRNYLVKI 1353 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D + +L I+ND+LD SKIE+GKM L++ + L + A EK + + Sbjct: 1354 DSASKHLLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDI 1413 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTG 745 NIP + D + QI +N+++NAI FT G +I + + E ++ V DTG Sbjct: 1414 ETNIPTALRGDPLRLGQILINLVNNAIKFTAQG-EIRLFVKLLAQEAKQVHLLFEVHDTG 1472 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + K + F Q S G+GLGL + K +V+ GK ++ ST +G+ Sbjct: 1473 IGIDEAQQAKLFEAFSQADLSTTREFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGSTFS 1532 Query: 806 II 807 Sbjct: 1533 FS 1534 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 9/155 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146 D G + +S+ + G +++G + + ++ W G+ Sbjct: 1057 KTDLKGVITYVSDAFCQISGYKREELMGKNHRISRHPDNDAKIYEEMWAVITHGGAWKGR 1116 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 EG Y +D + + G+ R D + L +K Sbjct: 1117 IKNKTKEGG--YYWVDSVIEQELDASGKVVGYAA------IRHDVTAHVELEELSEKLES 1168 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 + E + + ++ + + +K ++ Sbjct: 1169 IVEKRTQDLAFLNKEQQAIFDSTSVGIVLLKERLI 1203 >gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776] gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776] Length = 1322 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 93/424 (21%), Positives = 176/424 (41%), Gaps = 17/424 (4%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 H + + + + N + + E ++ + SI E Sbjct: 423 HRTRGDFSQHVFVEPHSEVGQIAAEYNRVLDRVTDEIRAREETTHALKSAEEKYRSIFEN 482 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILS 518 +GI + GI ++ N A++K++GY + L + P + I + Sbjct: 483 AVEGIFQTSPSGIYMNVNPALAKIYGYDSPNDLIGSIGDISKDLYVDPQRRAEFCRLIET 542 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHA 574 + + + + + ++ ++ D++E ++ + + Sbjct: 543 EGAVKGFVSEVYRR--DGSTIWISENAHPVKNAAGRILYYEGSVEDVTEVRRAEQWRAEK 600 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + + S FLA++SHEIRTPL +IG +++K + R Y S Sbjct: 601 AEAEAANEAK-SQFLAKMSHEIRTPLNGVIGMLDLLKATSL----DDRQKRYVTICRSSA 655 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L ++ND+LD+SKIE+G+M L L + V + + A K + + A ++ Sbjct: 656 DTLLGLINDILDLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDV 715 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTN 750 P+ I D ++QI +N++ NA+ FT G I +S + E + + V+DTG+G++ Sbjct: 716 PQRIEGDPERLRQILVNLVGNALKFTSVGYVLIKVSMAQSPTGEHRLQIHVKDTGIGISP 775 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +K +PF Q + R GTGLGL + + + D G I S GT + PL Sbjct: 776 AQQQKLFQPFTQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLPL 835 Query: 811 YDTS 814 Sbjct: 836 TSAE 839 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 25/252 (9%), Positives = 66/252 (26%), Gaps = 13/252 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143 + G ++ L K G + + + D+S L++DP L++ + Sbjct: 487 IFQTSPSGIYMNVNPALAKIYGYDSPNDLIGSIGDISKDLYVDPQRRAEFCRLIETEGAV 546 Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G + ++ +G+ + I A P+ + + G V + Sbjct: 547 KGFVSEVYRRDGST--IWISENAHPVKNAAGRILYYEG--SVEDVTEVRRAEQW-RAEKA 601 Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + +E K + + + + ++ D L Sbjct: 602 EAEAANEAKSQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRSSADTLLGL 661 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 +L + E + + ++ L+ P + + Sbjct: 662 INDILDLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEG 721 Query: 318 GENLTPETVDKC 329 + + Sbjct: 722 DPERLRQILVNL 733 >gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155] Length = 1238 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I ++ L A +L L Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + Y + L+ + E Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEGYRAQYLADPV-GAYE 658 Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + R + + T DI+ K + L AK+ AE Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+ Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G+ + + Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 K F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 99/347 (28%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I + Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613 Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + +H DD ++ E Y L + + N + Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEGYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + L + + + + + Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720 >gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 812 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 104/515 (20%), Positives = 192/515 (37%), Gaps = 22/515 (4%) Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIE 361 P + E ++ P+ + G L YAN + + Sbjct: 3 DDPAGTPLPTGSATASEQFLQSLLEHLPVFIYRKDREGRLTYANQRYCERRGQPLAALLG 62 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + +T + + E S + I Sbjct: 63 QTD------FDLSPPELAQTHAADNLIVMQTRRPLEKDELQVLPSGEKS-WIHIIKVPII 115 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + E + G+ + D + + + E L +LE D + +R + ++ Sbjct: 116 DADGEVVGTQGMYWDITDRKAVEEALAHERDLLSGLLEHIDDHVYFKDRASRFRRISTSL 175 Query: 482 SKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 ++ FG ++ K F + I+ + + + Sbjct: 176 ARKFGLRDPAAVVGKTDFDFFTREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWG 235 Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 L + + D++ K+ + +L AK AE + KS+FLA +SHEIR Sbjct: 236 LTTKVPLRNRAGEIIGTCGITKDVTALKRTEQQLQAAKLAAEAAARAKSEFLANMSHEIR 295 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ +IG + ++ + + +P ++A + S ++ ++ND+LD SKIE+GK+ Sbjct: 296 TPMNGVIGMTGLLLDTKL----DPEQRQFAESVRNSAENLMTVINDILDFSKIEAGKLLF 351 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 L E + + ++ A K I + A +PR + D ++QI N+L NAI Sbjct: 352 EELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQILTNLLGNAI 411 Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G ++++STT V V DTG+G++ + + F Q +S R Sbjct: 412 KFTEHG-EVVLSTTLERETATHAIVRFDVTDTGIGISRDVQARLFQSFEQADSSTTRRYG 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL ++K +V G+ + S G+ Sbjct: 471 GTGLGLAISKQLVAMMHGEIGVQSEAGVGSTFWFT 505 Score = 84.7 bits (208), Expect = 5e-14, Method: Composition-based stats. Identities = 31/272 (11%), Positives = 71/272 (26%), Gaps = 11/272 (4%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + T + F+ + F + D G L ++ + G ++G Sbjct: 3 DDPAGTPLPTGSATASEQFLQSLLEHLPVFIYRKDREGRLTYANQRYCERRGQPLAALLG 62 Query: 116 MRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 D+S + +++ + G I + +PI + E Sbjct: 63 QTDFDLSPPELAQTHAADNLIVMQTRRPLEKDELQVLPSGE--KSWIHIIKVPIIDADGE 120 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--- 231 G +G + S L E H + + Sbjct: 121 VVGTQG--MYWDITDRKAVEEALAHERDLLSGLLEHIDDHVYFKDRASRFRRISTSLARK 178 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 LR V T++ + + ++ ++ + E + + E + Sbjct: 179 FGLRDPAAVVGKTDFDFFTREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWGLTT 238 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L+N + E + ++ Sbjct: 239 KVPLRNRAGEIIGTCGITKDVTALKRTEQQLQ 270 >gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella benthica KT99] Length = 1235 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 117/571 (20%), Positives = 207/571 (36%), Gaps = 37/571 (6%) Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAY 314 + P E S + F ++ +QY L ++ + ++ R + Sbjct: 393 SQEPRKPPELISQSWEPWFQLVSRIFEENQQYTRHLAEQNRRLDKLVARRTERLKETTER 452 Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + L +D P F G N + + Y + I L Sbjct: 453 REREYALLRSLLDAIPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQESI--KLTSKE 510 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + A +L L ++ + + N+ E + + Sbjct: 511 QSVRIKAEDERVLAERTPLRYQEKVELA------GKTVLLDTLKLPFYNRRGELLGLIAV 564 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED 491 + + ++ + + ++A DG+ ++ + II N A + GY + Sbjct: 565 WRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQII--CNPAYYSMLGYKSNE 622 Query: 492 --ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----II 544 L + + + Y + L + + K + L + Sbjct: 623 FPALVSTIDELIHPDDRIRVQEYREQYLDDPV-GAFDIEFRMRGKSGQYHWLLSRGRVVE 681 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 T DI+ K + L AK+ AE + +KS+FLA +SHEIRTP+ AII Sbjct: 682 FTADNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANVYKSEFLANMSHEIRTPMNAII 741 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++ + P + +Y S +L I+ND+LD SKIE+GK+ L L Sbjct: 742 GMLQLAERTELTP----KQRDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPL 797 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 D+ + A+ L L + +K + + IL D + Q+ +N+LSNA+ FT +G Sbjct: 798 DKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTG- 856 Query: 724 QIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 I E + VRDTG+G++ + F Q S + GTGLG Sbjct: 857 --EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLG 914 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L ++K +V G+ + S G+ Sbjct: 915 LSISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 27/262 (10%), Positives = 71/262 (27%), Gaps = 15/262 (5%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137 + D G ++ + +G ++IG ++ + +L Sbjct: 465 DAIPEAIVFK-DKEGKYLGCNKAAERMLGYTESELIGQESIKLTSKEQSVRIKAEDERVL 523 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 + + +E V +D LP Y+R E G + R L Sbjct: 524 AERTPLRYQE---KVELAGKTVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 578 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252 ++ + ++ G + I + L K+ + S + H DD Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTIDELIHPDD 638 Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHP 309 ++ ++Y L + + + + ++ + + Sbjct: 639 RIRVQEYREQYLDDPVGAFDIEFRMRGKSGQYHWLLSRGRVVEFTADNQPKRMVGTHKDI 698 Query: 310 SLSAYFDEGENLTPETVDKCPI 331 + + + + + Sbjct: 699 TRHKSNEVALLEAKQDAESANV 720 >gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio nitroreducens DSM 19672] Length = 1095 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 105/416 (25%), Positives = 192/416 (46%), Gaps = 13/416 (3%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 H + + ++ + + G + + + +R ++ + + SI E Sbjct: 216 HRLLMPDGRIKYVIERGKTFYDKDGDPIRSIGTVQDITEKVLLERSVKEQEIVFKSIFER 275 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 GI + G I+ N +++L Y ED K + ++ +L+ + Sbjct: 276 APVGIIFTDILGNIILVNNYLAELLDYEHEDFKNKNISEITFAEDYKKEQIFIQGLLNNE 335 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576 + ++ L + L + + +I++ K + +L AK+ Sbjct: 336 ID-YYRIEKRYIKRDGSLNWVDSSRTSLKDEDGNIKNFISVVLNINDKKVAEQELIKAKE 394 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE+ + KS FLA +SHEIRTPL IIG ++++KN+ +EY +++ + + Sbjct: 395 NAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENL----PKHVVEYVKHLNMASHH 450 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +LD++ND+ D S+IESG+M + + SL + ++E + ++ A EK I + IP Sbjct: 451 LLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAKEKNIELTVFVDPLIPS 510 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYE 752 +I+ D VKQI N+L NAI FT G + I + + +++ ++DTG+G++ + Sbjct: 511 KIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSVDILFVIKDTGIGISGDK 570 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +K PF Q S + GTGLGL + K ++DA G S P KGT + Sbjct: 571 KQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFISEPGKGTTFYVTL 626 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 7/140 (5%) Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTP 506 + ++ + LE+ GI + G +L + K+ GY ++ + + L Sbjct: 8 SIDEIWAALESGDIGIWFWDNSTGKVL-WSDHAYKMLGYYPNEFEMSYEKWVELLHPEDV 66 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISE 563 + + L +++ K + + + T DI+E Sbjct: 67 EYAQLSVAKQLEFKNSFSVDFRLRAKDGSYKWIRGSGKVIRYADDGSMLYLTGTHTDITE 126 Query: 564 WKQEKNKLSHAKKIAEKESS 583 K + L I E+ Sbjct: 127 KKNAEILLQEKLYILEEAEK 146 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 12/149 (8%), Positives = 39/149 (26%), Gaps = 7/149 (4%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLL 137 V + D G + ++ L + + + +++ I LL Sbjct: 274 ERAPVGIIF-TDILGNIILVNNYLAELLDYEHEDFKNKNISEITFAEDYKKEQIFIQGLL 332 Query: 138 KRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + + + + +G+ +D + + + F +V Sbjct: 333 NNEIDYYRIEKRYIKRDGSLN--WVDSSRTSLKDEDGNIKNF--ISVVLNINDKKVAEQE 388 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + + ++ K + + Sbjct: 389 LIKAKENAERANQAKSTFLANMSHEIRTP 417 >gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O395] gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27] Length = 1331 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.089, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212] Length = 1236 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 114/477 (23%), Positives = 200/477 (41%), Gaps = 35/477 (7%) Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + A + + P N++ + + R W+ LA TF Sbjct: 328 LAALFGAFLFNRRVVDPLKHLNHSALEI-------SAGNLHLRAAIEGWDEMRQLAQTFN 380 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + +N + D + + I+ ++ S++E D + + G ILS Sbjct: 381 LMVERLNASNLELENRVAARTADLQRANSALAIKEEEMRSVVEHMVDCVVTTDEIGKILS 440 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----------- 525 N + KLFGY ++++ + ++ + + S Y+ Q Sbjct: 441 VNPVMEKLFGYSHDEMIGQNVSIIVPEPDRSKHISYMENYCRTGHGQEYVGRPYLSGSHG 500 Query: 526 ---EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + G K + + + + + + + ++ M DI E + N L A+ AE+ Sbjct: 501 IGRGREVEGIRKNGERIEIYLAVSEYYVGEERHFTGVMRDIREHVRIMNDLQQARIEAEQ 560 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS FLA +SHEIRTP+ +IG +V++ +E AN I S +L I Sbjct: 561 ANKAKSAFLAAMSHEIRTPMNGVIGMIDVLRQTSLTGY----QMEMANLIRDSAYSLLSI 616 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699 + D+LD SKIE+GK+ + P+SL V A ++ A K++ + IP +L Sbjct: 617 IEDILDFSKIEAGKLEIEKIPMSLANIVENACGMLAHVALSKKVELTLFIDPEIPENMLG 676 Query: 700 DLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYE 752 D ++QI +NI++NAI F+ G++ + T + V ++ D G+GM Sbjct: 677 DPLRLRQILVNIINNAIKFSSKQEKQGKVSVRVLLTESNPDQVVVTFQITDNGIGMNKET 736 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EK K F Q S R GTGLGL ++ + + + + S P G+ I P Sbjct: 737 QEKLFKSFSQGDPSTTRRFGGTGLGLAISHHLAELMDAEITVQSAPQHGSTFIIQMP 793 >gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1402 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 125/707 (17%), Positives = 243/707 (34%), Gaps = 65/707 (9%) Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + PI + G+R GF I P+ + + Sbjct: 223 SGEPIMTSPISLFGYRVPRESGFWLLLAIYREGMPLQTPQQRMVATSGWVYAPFSLAQIV 282 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ DI + + A V+ T ++ P Sbjct: 283 QSALGERDDIALDISDRNEPTHNLYRSGTPAIDSALGPPVVTLLPMYGRTWVITAHPTAS 342 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + + L N + L Sbjct: 343 FIASLNQNSPWLIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 402 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + NP+ + Y + + I+ L+ LL + Sbjct: 403 AETPDGRITLWNPAAEAMFGYTAEEAIDQ--DLTMLLAPQAYAMPEIDHADA------AL 454 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 A ++ T+ + + + + + D + ++ Sbjct: 455 AANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNAS 514 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A K+ GY +++ + Sbjct: 515 LEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGR 574 Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + L + + TLE + + + L + Sbjct: 575 RKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 634 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 635 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 694 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 695 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 750 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 751 ECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 810 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 811 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 869 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G+GLGL +++ +++ G+ + S P +G+ + L ++ P + Sbjct: 870 GGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 916 Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 48/443 (10%), Positives = 117/443 (26%), Gaps = 47/443 (10%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + REF G G+G +H RV + + ++ + + E+Y Sbjct: 132 SYSRSRDYPREFPGVLGYGYIH--RVAPADEDAFLQNARADGAPDIQRRPLAPWDGERYI 189 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + + + + P++TS S + + Sbjct: 190 VLYFEPESSGNHPLGIDIASDPHRRAAALQAARSGEPIMTSPISLFGYRVPRESGFWLLL 249 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + LQ + P A + + Sbjct: 250 AIYREGMPLQTPQQRMVATSGWVYAPFSLAQIVQSALGER-------DDIALDISDR--- 299 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N L + + + L P ++ + + T ++ Sbjct: 300 -NEPTHNLYR-------SGTPAIDSALGPPVVTLLPMYGRTWVITAHPTASFIASLNQNS 351 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 W ++ + + + ++ + M+L +++ +S+ Sbjct: 352 PW------------LIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSE 399 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I +G I N A +FGY E+ + + T+ L + + + Sbjct: 400 AIVAETPDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAP--QAYAMPEIDHADAALAAN 457 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579 T+ ++ + + + S DIS+ + + E Sbjct: 458 ASAAQTMH-HRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNASLE 516 Query: 580 KESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 517 HQVAERTGELVKFSVLQRAILAH 539 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138 D+ G++ + K +G A ++IG R + + + L+ Sbjct: 547 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 606 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 607 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 664 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 665 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 724 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 725 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 784 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 785 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 827 Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 32/376 (8%), Positives = 79/376 (21%), Gaps = 14/376 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149 G + + G A + I L + + P D N +T Sbjct: 406 PDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAPQAYAMPEIDHADAALAANASAAQTMH 465 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G ++ + + PI SG F L+ H Sbjct: 466 -HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRSIDLNASLEHQVA 520 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + G + + + + + + + + Sbjct: 521 ERTGELVKFSVLQRAILAHAGYAIIATDSS--GFVTLFNPAAEKMLGYNAAEVIGRRKAS 578 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E + Q + + + S + + + + Sbjct: 579 QFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 638 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 H + + LT+ K + + SD A + Sbjct: 639 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 696 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + L + + I + + + +E Sbjct: 697 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 752 Query: 450 EVMQLCSILEATSDGI 465 L + + ++ + Sbjct: 753 APFDLNQLFDNIAELM 768 >gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae V52] Length = 1113 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 232 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 291 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 292 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 351 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 352 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 411 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 412 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 467 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 468 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 527 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 528 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 587 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 588 LVELMGGQITVHSEEGKGSTFEFS 611 Score = 44.2 bits (103), Expect = 0.090, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 267 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 326 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 327 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 383 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 384 AMSQAKGDFLANMSHEIRTPMNA 406 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 220 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 279 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 280 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 333 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 334 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 392 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 393 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 440 >gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum gryphiswaldense MSR-1] Length = 1123 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 170/388 (43%), Gaps = 18/388 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + +E E L +I + +DG+ +++ G+I+ N A + GY ++L Sbjct: 337 KRSSTALEHERASLKAITDTMADGLFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHAL 396 Query: 501 LE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---C 553 + + + + +S S K+ +++++ + L Sbjct: 397 FHSHAVNDHLPISECPVFKAVSGGKP--YAGEEYFSHKDGRVIAMDVASMPLVQDGQLTG 454 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 DI+ K+ + L AK AE+ + KSDFLA +SHEIRTP+ IIG + ++ + Sbjct: 455 SVNAFRDITPRKETEQALIAAKHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLDT 514 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 Y N I S +L I+ND+LD SK+E+GK+ P L V + Sbjct: 515 HLSS----EQNYYTNTIRVSAESLLTIINDILDFSKMEAGKLEFEETPFLLTPLVEGVVD 570 Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731 ++ A K I + + + R+ D ++Q+ LN+ NA+ FT G I ++ Sbjct: 571 ILAPRAKAKGIGLTFAVPRDASRVFISDAGRLRQVLLNLAGNAVKFTEKGSVAITVTLEP 630 Query: 732 TSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V + DTG+G+ + + F Q +S + GTGLGL + + +V+A Sbjct: 631 KDETCVEACFAITDTGIGIPDEAKSRLFSRFTQADSSTARKFGGTGLGLVICQRIVEALG 690 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G STP +G+ FPL PH Sbjct: 691 GAIGFDSTPGQGSRFWFQFPL-RLGDPH 717 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 23/264 (8%), Positives = 67/264 (25%), Gaps = 24/264 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-----LLKRQ 140 + +D HG + + +G +M+G + + ++ + I + + Sbjct: 361 LFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHALFHSHAVNDHLPISECPVFKAVSGG 420 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + G+ +G + + + A++P+ ++ + +G + Sbjct: 421 KPYAGEEYFSHKDGRVIAMDV--ASMPLV-QDGQLTG--SVNAFRDITPRKETEQALIAA 475 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + K + + + + S + Y + E Sbjct: 476 KHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLDTHLSSEQNYYTNTIRVSAESLL 535 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + E L L + + L+ + Sbjct: 536 TIINDILDFSKMEAG---KLEFEETPFLLTPLVEGVVDILAPRAKAKGIGLTFAVPRDAS 592 Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344 F+ G L Sbjct: 593 R-----------VFISDAGRLRQV 605 >gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11] Length = 742 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 181/395 (45%), Gaps = 15/395 (3%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + +N ++ + ++ K + + + +L + E +D + +++ +G I N A Sbjct: 202 RSRKNTLAVALQNKQLEQINAKLQAQQLQSERLAVVAENANDSVFLMDSDGRITWVNEAF 261 Query: 482 SKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 S++ GY ++ + K L + L + K+ +L+ Sbjct: 262 SRITGYQYDEAIGKLPGELLNGEDTDQAVIDALEAGRATGKP--FRLEIRNRRKDGQLIW 319 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L + D++ KQ + +L+ A+ AE+ + KS+FLA +SHEI Sbjct: 320 LETNQVPMLREDGSVETVIAVERDMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEI 379 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ +IG +++++ + YA+ I S +L ++ND+LD+SK+++G++ Sbjct: 380 RTPMNGVIGMAQMLERTEL----DEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVT 435 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 L + + L + A EK I + A ++P++L D R ++Q+ LN++ NA Sbjct: 436 LSEVDFDPRACFQQTLKLFEPQAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNA 495 Query: 716 IHFTPSGGQ-IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 + FT G + ++ HT + + V+D+G+G+ + + + F Q + R G Sbjct: 496 VKFTDDGAVAVSVNADHTRDHVTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGG 555 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 TGLGL +++ + +A G + S +G Sbjct: 556 TGLGLTISRLLCEAMGGDITVRSELGQGATFSAYL 590 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 28/411 (6%), Positives = 96/411 (23%), Gaps = 40/411 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143 + +D+ G + ++E + G + IG ++ + D + + + Sbjct: 245 VFLMDSDGRITWVNEAFSRITGYQYDEAIGKLPGELLNGEDTDQAVIDALEAGRATGKPF 304 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G + ++ +P+ + + Sbjct: 305 RLEIRNRRKDG--QLIWLETNQVPMLREDGSVETV--IAVERDMTAAKQYEQQLNDARIA 360 Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +K + + + + + + L + Sbjct: 361 AEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTELDEEQRLYADTILGSARTLLSLI 420 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +L + E + +Q + ++E L + + Sbjct: 421 NDVLDLSKMDAGEVTLSEVDFDPRACFQQTLKLFEPQAQEKGIQLHLDVAEDVPQLLNGD 480 Query: 319 ENLTPETVDKC-----------PIPFFVYSHGNLFYANPSF-----------------LL 350 + + + + V + + F Sbjct: 481 DRRLRQVILNLVGNAVKFTDDGAVAVSVNADHTRDHVTLRFSVKDSGIGIAPEQQSRIFE 540 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 GG L +L + + SA L + + Sbjct: 541 RFSQADAAITRRFGGTGLGLTISRLLCEAMGGDITVRSELGQGATFSAYLRMNPATGD-A 599 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + + + E ++ + ++ ++ E ++L ++ + Sbjct: 600 VVENAQISDYQDNALDGLRVLVAEDNRINRLLIEKYLQDEPVELAFAMDGS 650 >gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus carboxydivorans Nor1] Length = 664 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 183/362 (50%), Gaps = 6/362 (1%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ E+ + +G L N+ + G ++++ + E Sbjct: 293 ATVFESLPGYAFYRDVDGRYLLVNQQFAAALGLRPDEVIGRTIYELHEPARAQRYAAEDK 352 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572 +++ +L ++ + S + ++ ++ + + DI+E KQ + KL+ Sbjct: 353 QLIDGELSVWADEELIASGGRKLIVYMQKVPVRDEAGRVTGIIGLAVDITEHKQLEVKLT 412 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A AE + K FLA +SHE+RTPL AI+GFSEV+ +Q FGPL + + + Y N I Sbjct: 413 EALAAAEAANQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQV-YVNDILD 471 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S +L+I+ND+LD++K+ +GK N + E V + + + + + +++ A K I + + Sbjct: 472 SARHLLEIINDVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDA 531 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P + D+R KQI N+LSNA+ FTP GG I + + E + + V DTG+G+ Sbjct: 532 GVPPQVQVDVRRFKQIMYNLLSNAVKFTPDGGAIKVECR-DAGEWLEISVEDTGIGIAAT 590 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPL 810 E +PF Q+ + + GTGLGL + + +V+ + G+ ++ S P +G+ + P+ Sbjct: 591 HAEHIFEPFYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLPV 650 Query: 811 YD 812 Sbjct: 651 RQ 652 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 24/340 (7%), Positives = 77/340 (22%), Gaps = 20/340 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147 D G ++++ +G ++IG + ++ + L W + Sbjct: 307 DVDGRYLLVNQQFAAALGLRPDEVIGRTIYELHEPARAQRYAAEDKQLIDGELSVWADEE 366 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 I + + + +P+ +G G + Sbjct: 367 L---IASGGRKLIVYMQKVPVRDEAGRVTGIIGLAV--DITEHKQLEVKLTEALAAAEAA 421 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 ++ K + + + + L + + + LL Sbjct: 422 NQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQVYVNDILDSARHLLEIIN 481 Query: 267 SSL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L + + +Q G +++ + + + Sbjct: 482 DVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDV 541 Query: 320 NLTPETV-DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + + + F G + + D G++ Sbjct: 542 RRFKQIMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVED---TGIGIAATHAEHIFEP 598 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + ++ T + + ++ + P Sbjct: 599 FYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEP 638 >gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 927 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 120/534 (22%), Positives = 216/534 (40%), Gaps = 30/534 (5%) Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL 351 ++ K R SL +E +T +D+ F + G + Y N Sbjct: 128 RSRQKLLEANRQLRESISLRRGVEEQLRMTQFAIDRLGDMVFLISPQGKIVYVNEKACQK 187 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 +Y+ +++ ++ + K L + + L T +NS+ Sbjct: 188 LQYEKEQLLQL-----SIEQIGCGHIETSWKEHWLKLKSYQTLTFQSHLRT-----KNSI 237 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + + D + ++ + L +E I I + E Sbjct: 238 QFPVEIQSNYVKTSSHEYNYAFIRDITDRVHQEERLRL----LSRAVEYGPASIVITDAE 293 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N K+ GY E+++ ++ T + L + +S + Sbjct: 294 GHIQYVNPKFEKITGYGAEEVIGNKPSLLKSGQTEPAIYDALWDSISRGHEWRG--ELIN 351 Query: 532 STKEEKLLSLRIIIKKL-----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ L I + + + DI+ K+ + L +K AE S KS Sbjct: 352 KRKDGSLYWEMAHISPVLSKTSGKITHFVGIKEDITSLKETEAHLELTQKKAEAASLAKS 411 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTP+ AI+G +E++ + + + +G +L I+ND+LD Sbjct: 412 EFLATMSHEIRTPMNAILGMTELLGETQLSI----EQRGFLSVCRSAGENLLQIINDILD 467 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 ISK+ESG + L P +L V +A +++ ++EK + ++P +L D ++ Sbjct: 468 ISKVESGGLELQHVPFNLRRIVYDAGEVIRFRSHEKGLHQLIFIDESVPEWLLGDPARIR 527 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762 QI +N L NAI FT +G + +T E++ RV DTG+G+ + F Q Sbjct: 528 QILINFLGNAIKFTEAGTIATVVSTTAGKGSQVEIVFRVIDTGIGIPESKQSVVFDAFKQ 587 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +S Q R GTGLGL ++K + D G+ + S G+ + L ++ P Sbjct: 588 LDSSTQRRYGGTGLGLTISKKLADLMGGQLGLKSQEGHGSTFTLSLRLSRSTGP 641 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 6/142 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 DA G+++ ++ + K G A ++IG + + S + + D + R + W G+ Sbjct: 290 TDAEGHIQYVNPKFEKITGYGAEEVIGNKPSLLKSGQTEPAIYDALWDSISRGHEWRGEL 349 Query: 148 TLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ P+ S+ + + + F GI + A + KK Sbjct: 350 INKRKDGSLY--WEMAHISPVLSKTSGKITHF--VGIKEDITSLKETEAHLELTQKKAEA 405 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228 K + + Sbjct: 406 ASLAKSEFLATMSHEIRTPMNA 427 >gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 623-39] Length = 1331 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 171/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G + S KG+ E Sbjct: 806 LVELMGGHITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.090, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.47, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae CT 5369-93] Length = 1331 Score = 362 bits (930), Expect = 1e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.092, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1333 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 119/643 (18%), Positives = 251/643 (39%), Gaps = 32/643 (4%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVS 241 V R+D P L ++ F L E + + S +M + +++ Sbjct: 545 VRQVRIDAIPFQLTAGGERYFLVLFEDMPPSVTAAPQAASKNPNVSSRQRQQMNDEQEIN 604 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 L + A + L++ + + E+ + N + + T + + + E Sbjct: 605 RLGQELATTKEYLQSIIEEQQATNQDLRAANEEILSSNEELQSTNEELETAKEEIQATNE 664 Query: 302 YLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358 L+ N ++ N + IP + + P+ + D Sbjct: 665 ELNTINEELQRRNVESNQVSNDLQNLLSSINIPILMLGGDMRIRRFTPTAGRIFNLIVTD 724 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 ++ L P L L +Q N + + P+ Sbjct: 725 IGRPLSDINHKLTIPDLEAQILEVVGTLNLKT----------QEVQDNDGHWYDLRIRPY 774 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + + + + + ++ +I+ + + I++ + +++ N Sbjct: 775 RTIDHKID--GAVVVLVDIDALKRSTEELRASKDYAEAIVATIRESLVILDIDLQVITAN 832 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLR-QTLEKITLGSTKEE 536 + + F E+ + + L ++L + Q LE + Sbjct: 833 QFFYEKFQVTPEETEHHLIYEIGDGQWNIPQLRSLLEDVLPQQTQFQNLEVEHNFERIGQ 892 Query: 537 KLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588 K++ L + L L + DI++ KQ + + +H A+ AE + K +F Sbjct: 893 KIMRLNARKMTLLDNRRMILLVIEDITQQKQLEAERTHLLAQEQSARNAAEAANHAKDEF 952 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 L+ +SHE+R PL +++G++ +++ + + + I+RS +++DLLD+S Sbjct: 953 LSILSHELRNPLNSMLGWANLLRTHQLEEVT---VNQGLEAIERSAQAQNHLISDLLDVS 1009 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 +I SG++ + + V L + AI++V+L A K I I T +L D ++Q+ Sbjct: 1010 RISSGRLRMDAQEVELIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVI 1069 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNAI FTP+ G+I ++ +T + ++V+DTG G+ L + F Q ++ Sbjct: 1070 WNLLSNAIKFTPTKGRIDVTLEYTYF-QAQIQVKDTGAGIKADFLPYVFERFRQADGTRT 1128 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 +G GLGL + + +V+ + G + S +G+ I P+ Sbjct: 1129 RSNQGLGLGLSIVRHLVELHGGTVEVESQGEGQGSTFTIKLPV 1171 >gi|119776242|ref|YP_928982.1| putative integral membrane sensor protein [Shewanella amazonensis SB2B] gi|119768742|gb|ABM01313.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B] Length = 1141 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 114/510 (22%), Positives = 209/510 (40%), Gaps = 26/510 (5%) Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 S E + ++ + SHG + N + L +++ + I + L+ Sbjct: 263 SLRASESKRRVQAIMETAIDGIVTIDSHGIITDVNQATEKLLGWRADELIGQNVKI--LM 320 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P S+++ L + I + I N + + E+ Sbjct: 321 PDPFHSEHDGYLARYLATGEARIIGKGREVEAIHKNG---HKIAIRLGIGHVKMAEDDFF 377 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---NREGIILSTNRAVSKLFGY 487 + + + + S++ GIA + + ++ + AV K+ GY Sbjct: 378 VAFISDIRQRLSMEMALRENEQKFRSLIGNIP-GIAYRCKNDEQWSMIFISNAVEKITGY 436 Query: 488 PVEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 P D + ++ F+ + ++ + LE L + + + Sbjct: 437 PASDFMLPSPKRSFSDLFHPDD----LEHINNAVPPVGAFNLEYRILHRNGDIRWMMEYG 492 Query: 544 IIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + S + DI+E +Q + +L AK IAE ++ ++ FLA +SHEIRTP+ Sbjct: 493 NHVRDQQSGEMYLDGFIMDITERRQMEQELLEAKDIAEAAATARAAFLANMSHEIRTPMN 552 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIGFS+++ +F P + I+ + +L ++ND+LD +K++ GK+ L Sbjct: 553 AIIGFSDILLESQFEP----EKHRHLKTINHAAKSLLHLLNDVLDSAKLDKGKLELEVRD 608 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720 SL + + E IS + L A K + + + + ++Q+ N++SNA+ FT Sbjct: 609 FSLVQELDEVISTLWLQARRKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKFTE 668 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G Q+ ++ V V DTG+GM+ +L+K PF Q S R GTGLG + Sbjct: 669 KG-QVRLTVNPGQGNHVDFVVEDTGIGMSPEQLDKIFDPFTQADASMSRRFGGTGLGTTI 727 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +K +V+ G S KG+ PL Sbjct: 728 SKQLVELMGGHISAGSELGKGSRFCFSLPL 757 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 71/252 (28%), Gaps = 25/252 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144 ID+HG + ++++ K +G A ++IG + + H + + ++ L Sbjct: 287 IDSHGIITDVNQATEKLLGWRADELIGQNVKILMPDPFHSEHDGYLARYLATGEARIIGK 346 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + G + + + + + + + + R + ++K Sbjct: 347 GREVEAIHKNGHKIAIRLGIGHVKMAEDDF------FVAFISDIRQRLSMEMALRENEQK 400 Query: 204 FSHLHEIKK--GHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDV 253 F L + E++ + + P + + S ++ + D Sbjct: 401 FRSLIGNIPGIAYRCKNDEQWSMIFISNAVEKITGYPASDFMLPSPKRSFSDLFHPDD-- 458 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 E + + N + +Y +++ + Sbjct: 459 --LEHINNAVPPVGAFNLEYRILHRNGDIRWMMEYGNHVRDQQSGEMYLDGFIMDITERR 516 Query: 314 YFDEGENLTPET 325 ++ + Sbjct: 517 QMEQELLEAKDI 528 >gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 914 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 121/758 (15%), Positives = 243/758 (32%), Gaps = 53/758 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID L I+ + + +++G + D + ++ + + Sbjct: 47 IDQQWRLTYINPAAIRLMDKPLEEILGQVCWGLFPEAKETDFYTQLHRAMEENIPVHFEA 106 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +P + + A P G F + ++ L Sbjct: 107 FYFPSA-----LWYECDAYPSAD------GLSVF--FRNISERKQMERQLRERAEEIEKL 153 Query: 208 HEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-------------HKDD 252 E+ + + E I + L++ +V+ H+ Sbjct: 154 MEVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVNLSKTAPPNERPLNYKVCRNGHEIP 213 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNH 308 + T + D + + + Y L + + ++ Sbjct: 214 PQELPLQYAATHGVEVRDSEFDLVFNDGSATSIYGYASPLFDEKGQVRGCIGAFMDITER 273 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E + ++ ++ + + F + Y S+D+I Sbjct: 274 KRAEQALSESRRRQSAVIQASNASYYEFATDLSWGTVDRRFAEMLGY-SLDEIPPVPERW 332 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-ANQFPE 426 + ++ + + I + + ++ + + N Sbjct: 333 DWWEQRLHPEDRERTLQAYHDFVQDLIPVLRQEYRLRHKDSSWRWWRVVSTTVKRNSQEY 392 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 G+ + + R + + + + E D I +G TN + Sbjct: 393 ATAIAGLIFDITEQRQAEEALRESEERFRVMAETVPDIIFTSRPDGSREYTNPRFYEHTR 452 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 E + L + + + + E + + Sbjct: 453 LTPEAAEGSGWMAALHPDDLEQVKTRWRHSVETG--ELFEAQYRLRDGNGRYRWFQGRAH 510 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI + L H ++ ++ K++FLA + HE+R PL Sbjct: 511 PIRNETGQITKWFGACSDIHD-------LVHIQEALKETDRCKNEFLAMLGHELRNPLAP 563 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I E+++ P + + IDR + +VNDLL++++I +GK+NL +PV Sbjct: 564 ICNAVELMRMHLHHP---AIQSKSIDIIDRQAKHLTRLVNDLLNVARIVTGKINLKTQPV 620 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L E V +A+ Q R + S ++ AD + QI N+L+NA+++TPSG Sbjct: 621 ELKEVVMQAVETAQPAIESARHELTLSLPAQPLKVEADPVRLVQIVANLLNNAVNYTPSG 680 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G I + + E I+RVRD GVG+ +L F Q S G GLGL L Sbjct: 681 GHIQLQVAQSQEGEAIIRVRDNGVGILPEKLPYIFDIFTQADRSLDQAQSGLGLGLTLVH 740 Query: 783 AMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819 + + + GK + S P +G+ I PL S + Sbjct: 741 RLTEMHGGKAFALSEGPGRGSEFTIHLPLILESTSQEI 778 Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 77/297 (25%), Gaps = 34/297 (11%) Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 F + +D + L Y NP+ + L + + Sbjct: 26 FWKTPPNIENILDSITDAFVLIDQQWRLTYINPAAIRLMDKPLEEILGQVCW------GL 79 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 L+R+ I + +P + Sbjct: 80 FPEAKETDFYTQLHRAMEENIPVHFEAFYFPSALWYEC----------DAYPSADGLSVF 129 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGYPVE-- 490 + + +R++ ++ ++E GI + E ++ N KL P + Sbjct: 130 FRNISERKQMERQLRERAEEIEKLMEVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVN 189 Query: 491 -----DILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRII 544 +P + +N + L + + + + + S+ Sbjct: 190 LSKTAPPNERPLNYKVCRNGHEIPPQELPLQYAATHGVEVRDSEFDLVFNDGSATSIYGY 249 Query: 545 IKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS----DFLARVS 593 L DI+E K+ + LS +++ + +F +S Sbjct: 250 ASPLFDEKGQVRGCIGAFMDITERKRAEQALSESRRRQSAVIQASNASYYEFATDLS 306 >gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 2724 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 128/751 (17%), Positives = 261/751 (34%), Gaps = 54/751 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G + + + + + + ++ +V + + + Sbjct: 1771 LFRLAADGTILDFRTKNYQALYTSPDSFVNHKIQEVFPTDAGEKLYAAIQQVLTTKSLVS 1830 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 P+ Y + +P+ E + +F+ Sbjct: 1831 VEYSLPLNQEEQYF--EARMVPL--NQNEV-----IALTRNISDRKQAELALAASQARFA 1881 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTEK 258 + EI K + I + + + L A Sbjct: 1882 GILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQSLDLLLPPRAATIHRQHVTN 1941 Query: 259 YPLLTSEESSLPEQED--FHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAY 314 + + + E+ + N ++ + L + + Sbjct: 1942 FAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICTAILRDISDRKQAELA 2001 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + D PI Y G + + NP+ + S+ ++ ++ + P Sbjct: 2002 LSQQKEILQTIFDSIPILLCFYKEGVEVEFINPALEQTLGW-SLAEMRDIDIMAEIYPDP 2060 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + ++D T + L +T+ + GI Sbjct: 2061 DYRTSVLD---FMLKADGTWQDFQTQTRR-----GEVLEITWANIRLPDGS-----TVGI 2107 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGII--LSTNRAVSKLFGYP 488 + + + + ++ QL ++ + +G+ + G + +L G Sbjct: 2108 GKDITERKQAELAIQEREYQLRTLADNLPNGLIYQLVREPNGQFYFSYITAGIERLVGIK 2167 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 E I++ +F +Y S E T + + Sbjct: 2168 PEVIIQDASVLFNLIVDEDRQLNYQLNEESWRNLSIYEMQMRKRTPSGDIRWSYVRSAPR 2227 Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + DI+E K+ + +L+ AK AE + KS FLA +SHE+RTPL I+G Sbjct: 2228 RLVDGRTVWDGIEIDITELKKTEIELAQAKDAAEAANRAKSAFLASMSHELRTPLNGILG 2287 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +++++K + + I + G +L ++ND+LD+SK+E+GK+ L+ E Sbjct: 2288 YAQILKTN---SNLTQKQKDGIEIIHQCGEHLLTLINDILDLSKVEAGKLELYPEDFHFP 2344 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +L A +K I + +IP+ + D + ++QI +N+LSNA+ FT +G Sbjct: 2345 SFLVGLCEIFRLKAIQKDITFNYNPPTHIPQIVHGDEKRLRQILMNLLSNAVKFTDTGTV 2404 Query: 725 I----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 II +N+++ +V DTG+GM+ +LEK PF QI EGTGLGL + Sbjct: 2405 TFTVNIIHKGQMTNDKIRFQVEDTGIGMSAEDLEKIFLPFEQIKE-TSRHHEGTGLGLAI 2463 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII--FP 809 K ++ + + S P G+ P Sbjct: 2464 TKKLIALMGSQIRVESHPGVGSKFWFEVDLP 2494 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 54/522 (10%), Positives = 141/522 (27%), Gaps = 35/522 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W+ID +G ++ ++ + +G +M+G + D + ++ Sbjct: 1139 IWSIDMNGNTIFVNPKMAQMLGCSVEQMLGQPMFAFMDEAGKAMATRNLERRRQGIHEKH 1198 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G++ + +A PI + + +G G ++ + ++ + Sbjct: 1199 EFKFRRNDGSD--LWTLIATTPICDTSGQCTGTLG--MITDITDRKRAEDALRYSEQLYR 1254 Query: 206 HLH-EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + G + + ++ E + + + E + T Sbjct: 1255 TMAKNFPNGAIFLFDHELRYLVADGQGLGRSGSGYSRNILEGQTIWEVLSEQECAVVETL 1314 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 +L E + + +++ + E + + +E + Sbjct: 1315 YREALAGIEKTLEMPYRNRIQLVQTRAVRDEAGEIIAGMVVAQDITERKQTEEALRESEA 1374 Query: 325 ----TVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + F+ NP+ ++ + + L Sbjct: 1375 FLRSIYEGIEAAVFIVDVLENGEFRYVSINPTHERMSG------LRNSEIKGKTLHEVLT 1428 Query: 376 SDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D R + I L + + G Sbjct: 1429 PDIAEAVCQRYRRCLAAGEKITYEHSLQINGKDS----WWISNLTPLKDSNSRIYRLIGT 1484 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDI 492 D + + +++ + I+ A+ + + + L NR + GY +I Sbjct: 1485 ALNISDRKQIELQLKENQRFIEKIINASPQLLYLFDPTAETDLYINRQSLDILGYTPAEI 1544 Query: 493 LRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + F L + ++ L + L + K+ L Sbjct: 1545 VGRGMQFFLDTLHPDDLPLIERNLNFWHTASDSDILTTESRFRHKDGSWCWLLSREVVFE 1604 Query: 550 FSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 T DI+E K+ ++ L ++I + S Sbjct: 1605 RDENNQVIKILGTSQDITELKEAEDALRRYERIVSSTTDAIS 1646 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 62/501 (12%), Positives = 136/501 (27%), Gaps = 34/501 (6%) Query: 96 KEISEELPKTIGNYAFKMIGMR---LCDVSDILHI---DPNNHIGDLLKRQNTWYGKTTL 149 I+ + +G +++G D + + N + + ++ Sbjct: 1527 LYINRQSLDILGYTPAEIVGRGMQFFLDTLHPDDLPLIERNLNFWHTASDSDILTTESRF 1586 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK------K 203 +G+ ++ L+ ++ R+ + G + +R ++ Sbjct: 1587 RHKDGSWCWL---LSREVVFERDENNQVIKILGTSQDITELKEAEDALRRYERIVSSTTD 1643 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L + + V + D + + + + L Sbjct: 1644 AISLVDRDYTYQIVNQAYLDWNQKHYDEIVGHSVSNLLGEEVFVQVIKPNLDRCLAGETI 1703 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + T Y Q S + + + Sbjct: 1704 NYQEWF--DYPGGKQEFISVTYIPYVDANQQISGVVVNCRNLTELKQVETQLRQTNQEMQ 1761 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 D P F + + Y S D P + Sbjct: 1762 AIFDAFPDILFRLAADGTILDFRTKNYQALYTSPDSFVNHKIQEVF---PTDAGEKLYAA 1818 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + ++ ++ L L FE + D + Sbjct: 1819 IQQVLTTKSLVSVEYSLP---------LNQEEQYFEARMVPLNQNEVIALTRNISDRKQA 1869 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + + ILE DGI ++ E I+ N+ ++FGY + IL + + L Sbjct: 1870 ELALAASQARFAGILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQSLDLLLPP 1929 Query: 504 NTPSVMNHYLTEIL--SLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTM 558 ++ ++T + RQ E+ G + + I KL + + Sbjct: 1930 RAATIHRQHVTNFAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICTAIL 1989 Query: 559 HDISEWKQEKNKLSHAKKIAE 579 DIS+ KQ + LS K+I + Sbjct: 1990 RDISDRKQAELALSQQKEILQ 2010 Score = 134 bits (337), Expect = 7e-29, Method: Composition-based stats. Identities = 62/536 (11%), Positives = 152/536 (28%), Gaps = 56/536 (10%) Query: 90 DAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVSDILH-----IDPNNHIGDLLKRQNTW 143 D + + L + G+ ++G L +V + + + + + Q Sbjct: 766 DPNLRYLVADGQALTEA-GHRGEALLGKTLWEVLPPENCALVEPLYHAALAGVEQTQEIS 824 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +G T + + G + R + + Sbjct: 825 FGDFTYLCQS------------TAVRNNAGTII--AGMVVTQNITERKQFEQALIRSENR 870 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL- 262 F + + V F SP SL ++ + + E PL+ Sbjct: 871 FQEIAKTVSQFFFVRSANSGEFLYVSPAYETIWGRSCESLYQHPESWIEAVHPEDRPLVL 930 Query: 263 -----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S+ + N Q ++N + E ++ + + Sbjct: 931 NSLNQQFQGHSVKREYRIIQPNGEQRWIIADVSVVRNEAGEPLRFVGVAEDITERKQAEL 990 Query: 318 GENLTPE----TVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E + P F + + + + + + Y + I A + Sbjct: 991 ELQSIKERLQYLLTASPAVIFSSQIEGDYSATFMSENASTILGYNAEKFIHNAQFWCERV 1050 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + N + P + + + Q +T ++ + Sbjct: 1051 HPEDKAVMNEVIPQLFAQGH------CTYEYRFQHGDGTYHWLTTQLRLVQDETGTPIEC 1104 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G + + + + + + + I+E +GI I+ G + N ++++ G VE Sbjct: 1105 VGYLIDITERKQAEESLREQEEEYRRIVETADEGIWSIDMNGNTIFVNPKMAQMLGCSVE 1164 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +L +P + + + + L I + Sbjct: 1165 QMLGQP---MFAFMDEAGKAMATRNLERRRQGIHEKHEFKFRRNDGSDLWTLIATTPICD 1221 Query: 551 SSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----DFLARVSHEIR 597 +S + DI++ K+ ++ L +++++ + K+ FL HE+R Sbjct: 1222 TSGQCTGTLGMITDITDRKRAEDALRYSEQLY--RTMAKNFPNGAIFLFD--HELR 1273 Score = 118 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 66/531 (12%), Positives = 143/531 (26%), Gaps = 35/531 (6%) Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGD 135 V F+ I+ +SE +G A K I C+ N + Sbjct: 1004 TASPAVIFSSQIEGDYSATFMSENASTILGYNAEKFIHNAQFWCERVHPEDKAVMNEVIP 1063 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 L Q + +GT Y + + G+ I Sbjct: 1064 QLFAQGHCTYEYRFQHGDGT--YHWLTTQLRLVQDETGTPIECVGYLI--DITERKQAEE 1119 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVL 254 + ++++ + E + L + +A D+ Sbjct: 1120 SLREQEEEYRRIVETADEGIWSIDMNGNTIFVNPKMAQMLGCSVEQMLGQPMFAFMDEAG 1179 Query: 255 KTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 K L + E+ +F + + + + S + L + Sbjct: 1180 KAMATRNLERRRQGIHEKHEFKFRRNDGSDLWTLIATTPICDTSGQCTGTLGMITDITDR 1239 Query: 313 AYFDEGENLTPETVDKC-----PIPFFVYSHG-NLFYANPSFLLLTKYK-SVDDIEIAGG 365 ++ + + F++ H A+ L + S + +E Sbjct: 1240 KRAEDALRYSEQLYRTMAKNFPNGAIFLFDHELRYLVADGQGLGRSGSGYSRNILEGQTI 1299 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + + + + R+ +Q ++ Sbjct: 1300 WEVLSEQECAVVETLYREALAGIEKTLEMPYRNRIQLVQTR------------AVRDEAG 1347 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAV 481 E + + + + + + + L SI E + I++ E +S N Sbjct: 1348 EIIAGMVVAQDITERKQTEEALRESEAFLRSIYEGIEAAVFIVDVLENGEFRYVSINPTH 1407 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ G +I K L + + L+ + T E + K+ +S Sbjct: 1408 ERMSGLRNSEIKGKTLHEVLTPDIAEAVCQRYRRCLAAGEKITYEHSLQINGKDSWWIS- 1466 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + K S T +IS+ KQ + +L ++ EK + L Sbjct: 1467 NLTPLKDSNSRIYRLIGTALNISDRKQIELQLKENQRFIEKIINASPQLLY 1517 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 49/514 (9%), Positives = 134/514 (26%), Gaps = 55/514 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGK 146 +D + +++ + +++G + ++ ++ ++ L T + Sbjct: 1648 VDRDYTYQIVNQAYLDWNQKHYDEIVGHSVSNLLGEEVFVQVIKPNLDRCLA-GETINYQ 1706 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G ++ + +P N++ SG ++ +++ Sbjct: 1707 EWFDYPGGKQEFISVT--YIPYVDANQQISGV--VVNCRNLTELKQVETQLRQTNQEMQA 1762 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + I ++ + + D + + Sbjct: 1763 IFDAFPDILFRLAADGTILDFRTKNYQALYTSPDSFVNHKIQEVFPTDAGEKLYAAIQQV 1822 Query: 265 EES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + SL E +N + + L N + + + + Sbjct: 1823 LTTKSLVSVEYSLPLNQEEQYFEARMVPLNQNEVIALTR-NISDRKQAELALAASQARFA 1881 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP--------- 373 ++ V S + N + YK+ + L LL Sbjct: 1882 GILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQ--SLDLLLPPRAATIHRQHV 1939 Query: 374 --------KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 K + R + T A + + N E Sbjct: 1940 TNFAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICT------------- 1986 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 I + D + + + + L +I ++ + + N A+ + Sbjct: 1987 ------AILRDISDRKQAELALSQQKEILQTIFDSIPILLCFYKEGVEVEFINPALEQTL 2040 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G+ + ++ + + + + + Q + T+ ++L + Sbjct: 2041 GWSLAEMRDIDIMAEIYPDPDYRTSVLDFMLKADGTWQDFQ----TQTRRGEVLEITWAN 2096 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 +LP S DI+E KQ + + + Sbjct: 2097 IRLPDGS-TVGIGKDITERKQAELAIQEREYQLR 2129 Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 73/632 (11%), Positives = 161/632 (25%), Gaps = 96/632 (15%) Query: 15 TSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF 74 T+N +G Q + + + F+ + P DS+ + L Sbjct: 157 TANLQG--QRIKRTHVRYDFDPHN---DPPQGDSW-YQATKQAGKGIWHPLVSLSQGVDQ 210 Query: 75 VFDPIPRTVRFTWNIDAHGYL------KEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 I + F D+ G EL + + GM + + I+ Sbjct: 211 PLLLIANFLPFN---DSEGTFQGILTATFFVPELAEFL-------EGMEVGKTGQVFIIN 260 Query: 129 PNNHIGDLLKRQNTWY---GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 + + + + +P+ + P+ F + V Sbjct: 261 RKGDLVASSTGEIPFKPDLDADYRKNKNLQDWRLPVQQSRNPLTKAAVNFLLTQ----VK 316 Query: 186 VNRVDNDPRALGKRLD--KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + + + F H++ I++ + + +L Sbjct: 317 HQSEIKQDQTFKFTFNDNRYFLHINPIQEQSGLNWFIVTVVPESEFMAEIYANTRTTIAL 376 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYT--KKQYFGTLQNNSKES 299 +L +T L E + G L N+ Sbjct: 377 CIAALILSILLGISTARWVTKPILQLNIAADEIARGEWQQSIPINRGDEVGQLANSFNIM 436 Query: 300 FEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 L + + + E+ + ++ P+ V+ G L YAN L + ++ Sbjct: 437 AAQLRQFFTQLQASNKALSQSEHNLTQILEAIPVGISVHDVTGQLTYANQKSKELLEIET 496 Query: 357 V-----DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + +D+ I + N L R + Sbjct: 497 LPDAKIEDLAITYQIYQSDTQQLYPVENLPAVRALNREQTIVDDLEIHQRN------QII 550 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR------------------KMEIEVMQ 453 + ++ + + + + + ++ + Sbjct: 551 PVEAYGTPLLDKNATILGAIVAFFDITERKQAEALQRNYHRILEANVAQRTAELRDANER 610 Query: 454 L---------------------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 L +I EA +D + +I+ E I N A +K ED Sbjct: 611 LKGEMAERQLLEGKLYSSEQQIRTIFEAINDIVLMIDAEKNI---NVAPTKRTYLSPEDS 667 Query: 493 LRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 Q+ + ++L + + + L I I L Sbjct: 668 HLLNLIVEQFFQDPEDSWFAQVQQVLDSQEPLYFDYNLTL---DNHEMWLTISIAPLSDQ 724 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + DIS+ KQ ++ L ++ + + Sbjct: 725 A-VIWVARDISDRKQVEDALRTSEYLYRAMAR 755 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 10/195 (5%) Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + S+ + N+ + + + + + L ILEA Sbjct: 411 RGEWQQSIPINRGDEVGQLANSFNIMAAQLRQFFTQLQASNKALSQSEHNLTQILEAIPV 470 Query: 464 GIAIINREGIILSTNRAVSKLFGY---PVEDILRKPFTVFLEQNTPSVMN--HYLTEILS 518 GI++ + G + N+ +L P I T + Q+ + L + + Sbjct: 471 GISVHDVTGQLTYANQKSKELLEIETLPDAKIEDLAITYQIYQSDTQQLYPVENLPAVRA 530 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574 L+ QT+ + +++ + L + + DI+E KQ + + Sbjct: 531 LNREQTIVDDLEIHQRN-QIIPVEAYGTPLLDKNATILGAIVAFFDITERKQAEALQRNY 589 Query: 575 KKIAEKESSHKSDFL 589 +I E + ++ L Sbjct: 590 HRILEANVAQRTAEL 604 >gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1431 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 120/651 (18%), Positives = 226/651 (34%), Gaps = 43/651 (6%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM---KNKVSS 242 + KR ++ + E V++ + F++ + ++ + Sbjct: 342 EAADRHKAETETKRAEQFLDSVIENLPIMVYVKEAEQLRFTRWNRAAEELTGFSRDLILG 401 Query: 243 LTEYYAHKDDVLKT---EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 T + + + L S E+ HT + + + + Sbjct: 402 RTGHDFFRKEEADRFTLHDREALRSGRLIEVASEEIHTQHRGVRLLRTKKLPVMDEQGRP 461 Query: 300 FEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTK 353 L + + + E E E + + + N NP+ + L Sbjct: 462 RFLLGIAEDITDRSAHESILHESEEKYRELFESSRDAIMILASPNWNFTACNPATVQLFG 521 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + G +P+ + V + + + R A Sbjct: 522 ARDAEHFTSLGPWD---VSPEHQPDGEESMVKAPKMIGMALQEGSHSFEWLHKRVGGPAF 578 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + R ++ ++ ++L+ I +G+ Sbjct: 579 LASVQLTRITLKGTTGLQATVRDITEQRRSEATLQAYSTFQKAMLDNAGHAIISCKPDGM 638 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------- 525 I N A L GY ++++ K V + Sbjct: 639 IQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARARQFSAELGTTIEPGFDVFVEKC 698 Query: 526 ------EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 E K+ ++ + + L + Y DI+ K +L AK Sbjct: 699 RRNLPNEHEWAYVCKDGTRKTVLLNVTALREADGRITGYLGIATDITPLKLTAQELVSAK 758 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + AE + KS FLA +SHEIRTPL ++G +E++ + + + RSG Sbjct: 759 EAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSLSA----KQQSLLETVRRSGV 814 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L+++ND+LD SKIE+GK+ L L + V EA+ L A K++ + ++P Sbjct: 815 ALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADVP 874 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTN 750 ++ D ++QI LN++ NAI FT G ++ ++ + RVRDTG+G+ + Sbjct: 875 DSLVGDAVRLRQILLNLIGNAIKFTAQG-EVTVAFALAEQHADTLTLACRVRDTGIGIPD 933 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 + F Q S R GTGLGL + K +V G+ + S P +G Sbjct: 934 AAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQG 984 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 32/383 (8%), Positives = 81/383 (21%), Gaps = 27/383 (7%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + G ++G D D H + L+ + Sbjct: 380 RFTRWNRAAEELTGFSRDLILGRTGHDFFRKEEADRFTLHDREALRSGRLIEVASEEIHT 439 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + + + LP+ G I + ++ ++K+ L E + Sbjct: 440 QHRGVRLLRT-KKLPVMDEQGRPRFLLG--IAEDITDRSAHESILHESEEKYRELFESSR 496 Query: 213 GHS-----------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + +F + + S ++ ++K K Sbjct: 497 DAIMILASPNWNFTACNPATVQLFGARDAEHFTSLGPWDVSPEHQPDGEESMVKAPKMIG 556 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + +E S + + + L+ + A Sbjct: 557 MALQEGSHSFEWLHKRVGGPAFLASVQLTRITLKGTTGLQATVRDITEQRRSEATLQAYS 616 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377 +D G + NP+ L Y + + + G+ LD Sbjct: 617 TFQKAMLDNAGHAIISCKPDGMIQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARA 676 Query: 378 NNAIKPVMLYRSDRTCIAAS--------ARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + Sbjct: 677 RQFSAELGTTIEPGFDVFVEKCRRNLPNEHEWAYVCKDGTRKTVLLNVTALREADGRITG 736 Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452 GI + ++ +++ Sbjct: 737 YLGIATDITPLKLTAQELVSAKE 759 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 17/174 (9%) Query: 434 EPEDVDTRINKRKM--------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + ++ +R++ E L +IL + +G+ I++ + IL N LF Sbjct: 20 ATDSGHSQTERRELPPSNTTTSLDEGRALDAILCSLDEGLCIVDAQWHILRLNPQAEILF 79 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGSTKEEKLLS 540 G P D+ +P + + L L L + L + +L Sbjct: 80 GAPAHDLKGRPAYQLIAPGPEEFRHECLVTDSSIPPLQSGLPYRTDNGFLLRQ-DGQLTP 138 Query: 541 LRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + I + LT D++ K+ ++ + + + + Sbjct: 139 ISLTITPMSHDGVVSGAVLTFRDLTTQKEAESHQVENSALLRRLQTGMVGLASN 192 Score = 45.4 bits (106), Expect = 0.043, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 63/234 (26%), Gaps = 27/234 (11%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPN-NHI 133 G ++ + +G A +++G + + L I+P + Sbjct: 635 PDGMIQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARARQFSAELGTTIEPGFDVF 694 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + +R + +GT + L + + +G+ G I Sbjct: 695 VEKCRRNLPNEHEWAYVCKDGT--RKTVLLNVTALREADGRITGYLG--IATDITPLKLT 750 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + + K + + P + + L+ + K Sbjct: 751 AQELVSAKEAAEAANVAKSRFLANMSHEIRT------PLNGVLGMTELLLSTSLSAKQQS 804 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 L + + + DF I + +Q L+ +E+ E + Sbjct: 805 LLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSA 858 >gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1403 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 113/649 (17%), Positives = 233/649 (35%), Gaps = 43/649 (6%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 I N D + + + ++ D+ P L + S Sbjct: 632 IADDNADMRDYLKRLLSQQYEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFELLKS 691 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 L + + + + E S E + + + + Y Sbjct: 692 LRADLSTQHIPIILLSAR---AGEESRVEGLEAGADDYLIKPFSARELLARVEATLKLSY 748 Query: 303 L---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358 L + R L A + + F V + N + +T + + Sbjct: 749 LRQEATRREQGLRAQAQAARVRLENVLAQINEQFIVLDQQWRYSFINDQVIQVTGKSNEE 808 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIP 417 + + L P L ++ +++T + +W Sbjct: 809 LLGHN--IWDLF--PDLVNSPFYTECHRAVAEQTVVQVEFFYWPWQRWFENRIY------ 858 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 P + + + ++++ + + + + + + G Sbjct: 859 -------PFAEGVTILVSDISARKQAEKELRESEERFRQMADNAPVMVWVTDPTGYCTYL 911 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 +++ + G E L + + + + + ++ + + Sbjct: 912 SKSWYEFSGQNEETGLGFGWLDAVHPEDSEDSRNIF--LAANKCQEAFRLEYRLRRFDGE 969 Query: 538 LLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKS 586 + Y ++ DISE K + + A+ AEK + K Sbjct: 970 YRWALDVGSPWFGLEGEFKGYIGSVIDISERKAAEVERDRLLQREQAARTEAEKANRIKD 1029 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHE+R+PL I+G++++++ ++ L + + + I+R+ L ++ DLLD Sbjct: 1030 EFLAVLSHELRSPLNPILGWAKLLQTKK---LDGATFKQALSTIERNAQLQAQLIEDLLD 1086 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +S+I GK++L+ PV+L + +I V L AN K I I+T+ + +IL D ++Q Sbjct: 1087 VSRILQGKISLNPIPVNLASIIRHSIETVYLAANAKSIDIQTTLDETVGQILGDPARLQQ 1146 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 I N+LSNA+ FT +GG++ + + + V DTG G+T+ L F Q ++ Sbjct: 1147 IVWNLLSNAVKFTSTGGRVEVLLESV-GQSAQITVSDTGKGITSEFLPYVFDYFRQADST 1205 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 + G GLGL + + +V+ + G S +G + FPL +S Sbjct: 1206 TTRKFGGLGLGLAIVRHLVELHGGTVGAESPGENQGATFWVKFPLITSS 1254 Score = 267 bits (682), Expect = 6e-69, Method: Composition-based stats. Identities = 106/550 (19%), Positives = 191/550 (34%), Gaps = 51/550 (9%) Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + FV+ L N ++ + K + Sbjct: 21 WPQSLKTAVRIMLTSRQAMFVWWGEELINLYNDAYKAIVGGKHPLALGQPASS----VWR 76 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ D + ++ + L + TF N Sbjct: 77 EIWDQVGPRAASALLNNEGTYDEALLLIMERNGYSEETYYTFSYSPVPNDEGGTGGIICA 136 Query: 434 EPEDVDTRINKR------KMEIEVMQLCSI----------LEATS-----DGIAIINRE- 471 +D I +R ++ + LE+ I +I+RE Sbjct: 137 NTDDTGRIIGERQLALLRELAARTADARTFDEACRVSAKCLESNPYDLPFAMIYLIDREK 196 Query: 472 GIILST--------NRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 ++ N A + + K + S + + + S + Sbjct: 197 HEVVLAGTCGIDIDNVAAPPKVALQSDSVWPFKKVITENKACLVSNLESFFENLPSGAWQ 256 Query: 523 QTLEKITL------GSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWK---QEKNK 570 +T + + G T + LL + + +L L IS Q + Sbjct: 257 RTPHQAVVVPIASSGQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASIANAQAYEE 316 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + K+ F + VSHE RTPLT ++G E + + PLG P E + Sbjct: 317 ERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLG-PSQQERIEIV 375 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 R+G +L +VN LLD S+IE+G++ +E L +E S+ + + + + Sbjct: 376 QRNGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAGMRLMVNC 435 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D ++I LN+LSNA FT +G +I +S + V L V DTG+G+ Sbjct: 436 PPLPEPVYVDREMWEKIVLNLLSNAFKFTLNG-EISVSLEWVKH-SVKLSVNDTGIGIPE 493 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ + F ++ +Q EG+G+GL L + +V + G + S GT I P Sbjct: 494 AEIPLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTCFTIFIPT 553 Query: 811 YDTSHPHDCI 820 P + I Sbjct: 554 GTAHLPQERI 563 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 5/178 (2%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 +D + + +SE F V W D GY +S+ + G + Sbjct: 869 SDISARKQAEKELRESEERFRQMADNAPV-MVWVTDPTGYCTYLSKSWYEFSGQNEETGL 927 Query: 115 GMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G D D N K Q + + L +G Y P + Sbjct: 928 GFGWLDAVHPEDSEDSRNIFLAANKCQEAFRLEYRLRRFDGE--YRWALDVGSPWFGLEG 985 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 EF G+ G ++ ++ + L ++ + E +K + ++ + + P Sbjct: 986 EFKGYIG-SVIDISERKAAEVERDRLLQREQAARTEAEKANRIKDEFLAVLSHELRSP 1042 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 56/240 (23%), Gaps = 20/240 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D I++++ + G +++G + D+ L P + Q + Sbjct: 785 LDQQWRYSFINDQVIQVTGKSNEELLGHNIWDLFPDLVNSPFYTECHRAVAEQTVVQVEF 844 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206 WP + P G I V + +++F Sbjct: 845 FYWP-----WQRWFENRIYPF---------AEGVTILVSDISARKQAEKELRESEERFRQ 890 Query: 207 LHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + V S+ + + A + + + L + Sbjct: 891 MADNAPVMVWVTDPTGYCTYLSKSWYEFSGQNEETGLGFGWLDAVHPEDSEDSRNIFLAA 950 Query: 265 E--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + E Y+ S + + Sbjct: 951 NKCQEAFRLEYRLRRFDGEYRWALDVGSPWFGLEGEFKGYIGSVIDISERKAAEVERDRL 1010 Score = 44.2 bits (103), Expect = 0.085, Method: Composition-based stats. Identities = 41/406 (10%), Positives = 84/406 (20%), Gaps = 41/406 (10%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 R F W + ++ +G +G V + L Sbjct: 35 SRQAMFVWW--GEELINLYNDAYKAIVGGKHPLALGQPASSVWREIWDQVGPRAASALLN 92 Query: 140 QNTWYGKTTLW--PIEGTNLYVPIDLAALPI--------------YSRNREFSGFRGFGI 183 Y + L G + + P+ G R + Sbjct: 93 NEGTYDEALLLIMERNGYSEETYYTFSYSPVPNDEGGTGGIICANTDDTGRIIGERQLAL 152 Query: 184 VHVNRVDNDPRALGKR--------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 + L+ L EK + + Sbjct: 153 LRELAARTADARTFDEACRVSAKCLESNPYDLPFAMIYLIDREKHEVVLAGTCGIDIDNV 212 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 +L + TE L S S E + + + ++ Sbjct: 213 AAPPKVALQSDSVWPFKKVITENKACLVSNLESFFENLPSGA--WQRTPHQAVVVPIASS 270 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 + L + D+ + AN + K Sbjct: 271 GQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASI----------ANAQAYEE-ERK 319 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + T+ + + +ML + L Q E + Sbjct: 320 RAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLGPSQQ--ERIEIVQR 377 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + IE V+ + + +L S+ +T Sbjct: 378 NGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRST 423 >gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1064 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 101/568 (17%), Positives = 213/568 (37%), Gaps = 27/568 (4%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + K + + E + Sbjct: 229 RRDVGQPLEAISHAVRKFGQTRELPKFEEQPGEFQILLHTLTDMASTVVLRESEVQERQL 288 Query: 321 LTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLS--TLLDAPKLSD 377 +D + + NP+ + L Y S ++ + D Sbjct: 289 QIELLLDSAGEGIYAIDTQGICIQCNPAAVALLGYASSTELVGRDIHTLCHRADEQGTHM 348 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ++ P + +Q + + +Q + + + Sbjct: 349 PHSDCPGCKVIASGE--PVHLAQEYLQRQDGSVFPVEMR-IHPMHQGGRVVGAVVLFDDI 405 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVE---DI 492 ++K+ + ++++A + + S +++L GY + + Sbjct: 406 SRRLDAEQKLRLSERHFRTLVQALPGTFYKCAPDPLCTMYSLGDNIAELTGYAADSFIEN 465 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + F+ + + L + L+ + + + K + + + + Sbjct: 466 HERSFSSVVHAEDWPRVREALDQALAQGV--VYHLEYRVNHTDGKPRWVMDRGQAVYDEA 523 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + D++E KQ + +L A++ A+ + KS+FLA +SHEIRTPL AI+G + Sbjct: 524 GRAEVLYGVLLDMTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGD 583 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ P+ Y + +G +++++ D+LD+S+IE G++ L P ++ V Sbjct: 584 LLGETALSPV----QRHYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALV 639 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ--- 724 E +V A++K +++ +P +L D + ++QI N+L NA+ FT G Sbjct: 640 EEVCEVVTSSAHDKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKHGEVMLD 699 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I ++ V+L+VRDTGVGM +E+ +PF Q ++ + G+GLGL + K + Sbjct: 700 IRHDAARSAAGAVLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRL 759 Query: 785 VDANMGKFYIFSTPAKGTLIEI--IFPL 810 V G + S +GT + + P+ Sbjct: 760 VSKMGGDIQLESALGRGTTATVQLVLPV 787 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 15/235 (6%) Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + L L + + R D A H ++ + F Sbjct: 201 LVKQQFLENSLIHLLIFGSAFFAISFFLRRDVGQ-PLEAISHAVRKFGQTRELPKFEEQP 259 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 Q + + + + +++ +Q+ +L++ +GI I+ +GI + N Sbjct: 260 GEFQILLHTLTDMASTVVL----RESEVQERQLQIELLLDSAGEGIYAIDTQGICIQCNP 315 Query: 480 AVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLRQTLEKITLGST 533 A L GY +++ + + + ++ +++ L + L Sbjct: 316 AAVALLGYASSTELVGRDIHTLCHRADEQGTHMPHSDCPGCKVIASGEPVHLAQEYLQRQ 375 Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + + + I + + DIS + KL +++ Sbjct: 376 -DGSVFPVEMRIHPMHQGGRVVGAVVLFDDISRRLDAEQKLRLSERHFRTLVQAL 429 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 20/260 (7%), Positives = 68/260 (26%), Gaps = 22/260 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP------NNHIGDLLK 138 + ID G + + +G + +++G + + + ++ Sbjct: 301 IYAIDTQGICIQCNPAAVALLGYASSTELVGRDIHTLCHRADEQGTHMPHSDCPGCKVIA 360 Query: 139 RQNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + L +G+ P+++ P++ + G + D Sbjct: 361 SGEPVHLAQEYLQRQDGS--VFPVEMRIHPMH-QGGRVVGA--VVLFDDISRRLDAEQKL 415 Query: 198 KRLDKKFSHLHEIKKGHS---------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + ++ F L + G ++ +I ++N S + Sbjct: 416 RLSERHFRTLVQALPGTFYKCAPDPLCTMYSLGDNIAELTGYAADSFIENHERSFSSVVH 475 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 +D E ++ + + + + + + + Sbjct: 476 AEDWPRVREALDQALAQGVVYHLEYRVNHTDGKPRWVMDRGQAVYDEAGRAEVLYGVLLD 535 Query: 309 PSLSAYFDEGENLTPETVDK 328 + +++ + D Sbjct: 536 MTERKQYEQRLESARQQADA 555 >gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 1084 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 122/635 (19%), Positives = 229/635 (36%), Gaps = 34/635 (5%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-- 241 + AL ++ + EI + V + + R+ ++ Sbjct: 178 IRAVEARTTREALEMLERRQVDAVFEILDAGTHVIRLNNIPQVIVAAVTPYRLPIRIGVR 237 Query: 242 -SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + A D L + + I + + + L Sbjct: 238 KDWPQLAAILDKALGGIPPTASQDFHNRWFNVQRSAEIAWSLFWEMTATVILIALGIVLT 297 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD 359 R E + ++ P ++ N + + Sbjct: 298 ALFMLRKVRKEVLVRRNTEAMLNSLLENLPAAVCLFDSSCRCRKLNAMCASIFGFTEQTA 357 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 ++ G + + +L + + + + T Sbjct: 358 LDGVPGTD------FPVASGVLSEKVLRDVLESGEPRMFPHSRTDADGKTAYYQT-TLVP 410 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + + ++ ++K+ ++ +L+ + G+ I EG I +N Sbjct: 411 LRKEDEKTDAVLCLSADMTTQKLLEKKLSEQLAFAQKLLKTSPIGVLIA-VEGFIRYSNP 469 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +L E + + + +L + + + Sbjct: 470 RARELMDLREEMDVARVYPQL----------REAAAMLPTLEDTLTDIALKSRDAQGQPH 519 Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 LR+ + + + D ++ K+ + +L AK+ AE S KSDFLA +SHEIR Sbjct: 520 HLRVTYTRTEYEGAPGIICWLVDDTQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIR 579 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ IIG + + R +Y I S N +L IVND+LD SKIE+GK+ + Sbjct: 580 TPMNGIIGMTHLTLQTELTS----RQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEM 635 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 L++ + E S+ L A EK + + + + ++P +L D + QI LN++ NAI Sbjct: 636 EHADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAI 695 Query: 717 HFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT SG +++S T +E + V DTG+GMT+ ++ + F Q NS R Sbjct: 696 KFTQSG-HVLVSVTQERHEGSKTRLRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYG 754 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL + K +V+ G+ ++ STP G+ Sbjct: 755 GTGLGLAICKRLVNLMGGEIHVRSTPGHGSDFIFT 789 >gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 631 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 106/505 (20%), Positives = 203/505 (40%), Gaps = 23/505 (4%) Query: 318 GENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E P+ F+++ + + + + Y +D + + P Sbjct: 136 SKKELEEIYKNSPVVAFLWTAEKDWPVEFVSDNITQ-FGYTP-EDFTSGNMIYGDIVHPD 193 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D L R + R+ T E + ++ GI Sbjct: 194 DLDFVRNDITRLEIEGRQFFSKEYRILT---RAEEPRWVAERSLMVPDEDGRPSYYQGII 250 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D ++ ++ + + I E + GI +++GII N + + G ++ I+ Sbjct: 251 IDVTDRKLAEQALLETEKRFRLIFENSPLGIFTFDKDGIITHCNTNFAMIMGASMDKIIG 310 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSS 552 L M + + + K + + + I + Sbjct: 311 LNI---LRSIKDKKMTDAVKPVFARKTGHYEGKCVSALSGKVTPIKADYSPNIAEDGSIL 367 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLARVSHEIRTPLTAIIG 605 + DI+ + + L + + K FL+ VSHE++TPLT+I G Sbjct: 368 GGIGIIEDITTRIESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKG 427 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++E+I ++ G L + E + R+ N + +V+ LL IS+ +SG + FEPVS+ Sbjct: 428 YTELIYDESLGTLS-EQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIV 486 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E V + +++ EK++ + N+IP I D + + N++ N+I FTP GG + Sbjct: 487 EIVEMTLQDLKIQIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSL 546 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + +E + + ++D G+G+ + + F QI S+ + GTGLGL + K +V Sbjct: 547 KFTIK-EEDEFIHIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIV 605 Query: 786 DANMGKFYIFST-PAKGTLIEIIFP 809 A+ GK ++ S KGT + I P Sbjct: 606 TAHKGKIWVESKGENKGTEMHIQLP 630 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 40/391 (10%), Positives = 108/391 (27%), Gaps = 33/391 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDL-LKRQNT 142 W +DA+ S+ + G ++IG + D ++ + H +L L+ ++ Sbjct: 16 LWAVDANNKFIYFSKGMEDITGISEERIIGKDIKDFMEVAQLCVGDETHFTELSLQAKDK 75 Query: 143 WYGKTTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALG--- 197 T L+ P+ + + +++G V Sbjct: 76 LKPTRYHSLSFLTPEGNLNLLSGHIIPMLNGSDKYTGL--ICTVESVSEQKIREKTFKDM 133 Query: 198 ----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL----TEYYAH 249 K L++ + + + ++ + + S ++ S + Sbjct: 134 ITSKKELEEIYKNSPVVAFLWTAEKDWPVEFVSDNITQFGYTPEDFTSGNMIYGDIVHPD 193 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSH 305 D ++ + L ++ T + + + + Sbjct: 194 DLDFVRNDITRLEIEGRQFFSKEYRILTRAEEPRWVAERSLMVPDEDGRPSYYQGIIIDV 253 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 + E E + P+ F + G + + N +F ++ ++ Sbjct: 254 TDRKLAEQALLETEKRFRLIFENSPLGIFTFDKDGIITHCNTNFAMIMGAS----MDKII 309 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 GL+ L +A+KPV ++ + + + Sbjct: 310 GLNILRSIKDKKMTDAVKPVFARKT------GHYEGKCVSALSGKVTPIKADYSPNIAED 363 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + GI + ++ ++ +L Sbjct: 364 GSILGGIGIIEDITTRIESEEALKKYAEELA 394 >gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 1095 Score = 362 bits (929), Expect = 2e-97, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 190/449 (42%), Gaps = 35/449 (7%) Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKR 445 + + + + M + E++ + + + + Sbjct: 116 QGHARVIREIVVPVIRDNKVVAIMGLGNKPV-DYDDEDLEVISFFADITWNLVEQKRTQE 174 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ +L +I +A D I +++ GI+ N A + GY ++ + + + + Sbjct: 175 ALQNSQARLKTITDAAQDAIIMMDTRGIVSFWNPAAETILGYTRDEAMGRDLHELIMPSR 234 Query: 506 -PSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHD 560 E + TK+ + + + + + + + + D Sbjct: 235 YRKNFQAAFPEFKKTGHGNAVGMTTELYAQTKDGREIPVELALSSVLIDDQWNAVGVVRD 294 Query: 561 ISEWKQEKNKLSHA--------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 I+E K+ + +L + AE+ + KS+FLA +SHEIRTP+ AIIG Sbjct: 295 ITEKKEAQEELQRHGRNLERKNVELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGL 354 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S + N + +Y + S +L I+ND+LD+SK+E+GK+ + P +L + Sbjct: 355 SYLCLQTDL----NNKQHDYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEHIPFALQD 410 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-- 723 S++ + A EK++ A +IP ++ D + QI +N+ NAI FT G Sbjct: 411 VTDHLTSIIHVKAQEKQLHFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKFTSQGQVM 470 Query: 724 -QIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 QI+++ E+ + ++DTG GMT ++ + + F Q +S + GTGLGL Sbjct: 471 LQIVLAEQTEQTEQTARIHFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFGGTGLGLV 530 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K +V+ G+ + S P KG+ Sbjct: 531 ISKQLVETMGGEISVESEPGKGSTFMFTI 559 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 15/139 (10%), Positives = 39/139 (28%), Gaps = 8/139 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKRQNTWY 144 +D G + + +G + +G L ++ + N Sbjct: 197 MDTRGIVSFWNPAAETILGYTRDEAMGRDLHELIMPSRYRKNFQAAFPEFKKTGHGNAVG 256 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 T L+ +P++LA + ++ + G+V + + +R + Sbjct: 257 MTTELYAQTKDGREIPVELALSSVLIDDQ----WNAVGVVRDITEKKEAQEELQRHGRNL 312 Query: 205 SHLHEIKKGHSSVEKEKYD 223 + +E Sbjct: 313 ERKNVELNAARLEAEEATR 331 >gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1021 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 102/603 (16%), Positives = 211/603 (34%), Gaps = 28/603 (4%) Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 ++S PP R + A + + ++ + I+L Sbjct: 183 TPGERSAPPIGRPWRSWFRGDDLAAIDQAIRQARQWGRAIAAVRLARSDGSEREIDLVVI 242 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF------VYS 337 + H + + ++L D P Sbjct: 243 ADHDPNDRFG--AGLFLVLKDHTELRDTQSKLERRDHLLRTVGDHLPETALFQVESSPQG 300 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 L + + + L ++ A L S T Sbjct: 301 QFRLTHLTQGVETILGLNPDQCLNDYQC----LLEKIHPEDRAGFLQALRSSALTLNDVR 356 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L + +++L ++ +G + +I ++++ +L S Sbjct: 357 CELRVY--DSQSALHWVWVHITARRSADGTTLWDGFLFDLTSRKIAEQELRAANQRLESF 414 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ I + +L N ++ G + + + +L Sbjct: 415 LDHAPYLAWITDEHERLLYLNHPYRQILGLRDDSPAGRTLAEVFGEEKAKACRAANRHLL 474 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573 + + EE++ S + T DI++ ++ + +L Sbjct: 475 ETNQPFESINTITTADGEERVYLSHKFPLPPEASGNGPRLVAGTSLDITQRQRLEQELQR 534 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ A + S KS FLA +SHEIRTP+ ++IG +++ + Sbjct: 535 ARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELSEAEREETTSLLRL---A 591 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--- 690 + +VND+LD+SKIE+G+M L + P + + A++L+ + A + I + Sbjct: 592 AEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQARARGIELVMEPLDQ 651 Query: 691 -ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGV 746 + P I D ++QI +N++SNAI F+ GG++ + + +++ V D G+ Sbjct: 652 SEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEEDSRWLVIDVVDQGI 711 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ ++E+ P+ Q + Q R GTGLGL +++ + + G+ ++ S G+ + Sbjct: 712 GIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELHVRSQVGVGSTFTL 771 Query: 807 IFP 809 P Sbjct: 772 TLP 774 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 33/404 (8%), Positives = 95/404 (23%), Gaps = 32/404 (7%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI--GNYAFKMIGMRLCDVSDILH 126 ++ VF + + D G L + E G + IG Sbjct: 148 NARIDLVFSVTTDPIAYV---DDSGALVTANAEFLVLTTPGERSAPPIGRPWRSWFRGDD 204 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVH 185 + I +++ W + ++ IDL + + N F G F ++ Sbjct: 205 L---AAIDQAIRQARQWGRAIAAVRLARSDGSEREIDLVVIADHDPNDRF-GAGLFLVLK 260 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + D ++ +R D + + + + E + ++ + + Sbjct: 261 DHTELRDTQSKLERRDHLLRTVGDHLPETALFQVESSPQGQFRLTHLTQGVETILGLNPD 320 Query: 246 YYAHK-----------DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + D + + + + + + + ++ Sbjct: 321 QCLNDYQCLLEKIHPEDRAGFLQALRSSALTLNDVRCELRVYDSQSALHWVWVHITARRS 380 Query: 295 NSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL 350 + + +D P ++ L Y N + Sbjct: 381 ADGTTLWDGFLFDLTSRKIAEQELRAANQRLESFLDHAPYLAWITDEHERLLYLNHPYRQ 440 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + L + T + + E Sbjct: 441 ILG------LRDDSPAGRTLAEVFGEEKAKACRAANRHLLETNQPFESINTITTADGEER 494 Query: 411 LAMTF-IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + ++ P G + + +++++ + Sbjct: 495 VYLSHKFPLPPEASGNGPRLVAGTSLDITQRQRLEQELQRARAE 538 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 46/137 (33%), Gaps = 10/137 (7%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPS 507 ++ + T+D IA ++ G +++ N L G + +P+ + + + Sbjct: 147 RNARIDLVFSVTTDPIAYVDDSGALVTANAEFLVLTTPGERSAPPIGRPWRSWFRGDDLA 206 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDIS 562 ++ + + + + + +++ + L + D + Sbjct: 207 AIDQAIRQARQWGRAIAA---VRLARSDGSEREIDLVVIADHDPNDRFGAGLFLVLKDHT 263 Query: 563 EWKQEKNKLSHAKKIAE 579 E + ++KL + Sbjct: 264 ELRDTQSKLERRDHLLR 280 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 37/347 (10%), Positives = 85/347 (24%), Gaps = 31/347 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG 145 W D H L ++ + +G G L +V LL+ + Sbjct: 423 WITDEHERLLYLNHPYRQILGLRDDSPAGRTLAEVFGEEKAKACRAANRHLLETNQPFES 482 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204 T+ +G + L+ +G R G +R + Sbjct: 483 INTITTADGEE---RVYLSHKFPLPPEASGNGPRLVAGTSLDITQRQRLEQELQRARAEA 539 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 +K + + P + + L+ + + +T L + Sbjct: 540 IEASRVKSQFLANLSHEIR-------TPIASVIGLIDLLSTSELSEAEREETTSLLRLAA 592 Query: 265 EESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E S + + D I + T + + + L+ + E + + Sbjct: 593 EHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQARARGIELVMEPLDQS 652 Query: 323 PE---------------TVDKCPIPF-FVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGG 365 V+ F G + P +++ +D ++ G Sbjct: 653 EPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEEDSRWLVIDVVDQGIG 712 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++ + R T + + + Sbjct: 713 IAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELHV 759 >gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1317 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 140/766 (18%), Positives = 276/766 (36%), Gaps = 96/766 (12%) Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-----WYGKTTLWPIEGTNLY 158 + +G + D ++LH + + ++ T + + + G Y Sbjct: 346 EILGYLDSEHS-KYPQDRINLLHPEDREKVVQAVQDHLTKKTPFYISEHRIRCKNGD--Y 402 Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 I ++ + R G A + L E S Sbjct: 403 KWILDRGQALWDDAGK--AIRMSGSHTDITERKQAEAELQELTISL----ENAISGISKL 456 Query: 219 KEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 + S + + + + H DDV K + + + Sbjct: 457 DKSGRYLSVNRSYANAAGYEPEEMLGMMWQQTVHPDDVDKLIAAYDQMQQNDKVEVEARG 516 Query: 276 HTINLNQYTKKQYFGTLQNNS-----------KESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + K+ ++ + S Y R + E Sbjct: 517 IRKDGSIFYKQLVMISIYDEQHQFIGHHCFMKDVSDAYGELRLRKYAEEALQQSETRFQL 576 Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 ++ P ++ G + YA+ S+L K ++D I + + + Sbjct: 577 FMNHSPAAAWISDTNGVILYASQSYLKNFKLPTLDIIGK--SIFEIFSSEFAHKILDN-- 632 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +++ +T A + + + + + + G+ + + + Sbjct: 633 --IHKVVQTQQVLEAIELAPRADGTVGQFLVYKF--PLPETSRQILVGGVAIDITERQQT 688 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + QL +I+E++ D I + +G+I S N ++FGY +I+ + T + Sbjct: 689 EAAI----SQLAAIVESSEDAIIGKSLDGVIESWNAGAERMFGYTALEIVGQSITKLIPP 744 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMH 559 N LT I + T+ K+ L+++ + I + + + Sbjct: 745 NYVDEEAQILTIIRQ--EKSIPHYETVRQRKDGTLVNVSVSISLIKNKKGAIIGASKIVR 802 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ K+ + +L A + AE + KS FLA +SHE+RTPL AI+GF++V+ P Sbjct: 803 DISDRKRREIELWQAMEAAESANLAKSTFLANMSHELRTPLNAILGFTQVMARN---PAL 859 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P E I RSG+ +L ++ND+LD+SKIE+G L L + +++ Sbjct: 860 TPELKEDLQTIGRSGDYLLSLINDILDLSKIEAGHSTLEETGFDLIALLHSLQNMLAERV 919 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQI---------ALNILSNAIHFTPSGGQIIIST 729 N K++ + A N+P+ ILAD + ++Q+ FT G I + Sbjct: 920 NSKKLQLYFDVAPNLPQFILADSQKLRQVLLNLLSNSL---------KFTDLG-YITLRV 969 Query: 730 THTSNE-------------------------EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + ++ V DTGVG++ EL+ F Q Sbjct: 970 RSEESSLTVRGLEAPEISNLDPTISNVTPKTSLLFEVTDTGVGISPQELDNIFDAFVQT- 1028 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + GTGLGL +++ +++ G+ ++ STP +G+ P+ Sbjct: 1029 QAGKRAKNGTGLGLTISRKLIEIMGGEIFVNSTPGQGSTFTFTVPV 1074 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 38/376 (10%), Positives = 98/376 (26%), Gaps = 22/376 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G ++ G +M+GM +D D +++ + + Sbjct: 455 KLDKSGRYLSVNRSYANAAGYEPEEMLGMMWQQTVHPDDVDKLIAAYDQMQQNDKVEVEA 514 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-----GIVHVNRVDNDPRALGKRLDK 202 +G+ Y + + + IY +F G F R+ ++ + Sbjct: 515 RGIRKDGSIFYKQLVM--ISIYDEQHQFIGHHCFMKDVSDAYGELRLRKYAEEALQQSET 572 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 +F + + I + + + K L Sbjct: 573 RFQLFMNHSPAAAWISDTNGVILYASQSYLKNFKLPTLDIIGKSIFEIFSSEFAHKI--L 630 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRNHPSLSAYFDE 317 + + Q+ I L L + + + Sbjct: 631 DNIHKVVQTQQVLEAIELAPRADGTVGQFLVYKFPLPETSRQILVGGVAIDITERQQTEA 690 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + V+ S G + N + Y +++ + + T L P Sbjct: 691 AISQLAAIVESSEDAIIGKSLDGVIESWNAGAERMFGYTALEIVGQSI---TKLIPPNYV 747 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D A + + + R +++ + ++ N+ + + I + Sbjct: 748 DEEA-QILTIIRQEKSIPHYETVRQR---KDGTLVNVSVSISLIKNKKGAIIGASKIVRD 803 Query: 437 DVDTRINKRKMEIEVM 452 D + + ++ + Sbjct: 804 ISDRKRREIELWQAME 819 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 7/143 (4%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDIL 493 E V+ + + + + L SDGI N + + + ++ GY Sbjct: 299 EIVERQQIEANLRESEERWQLALRGNSDGIWDWNMQTNEIFYSTRCKEILGYLDSEHSKY 358 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + L + + + L+ + K + + L + Sbjct: 359 PQDRINLLHPEDREKVVQAVQDHLTKKTPFYIS-EHRIRCKNGDYKWILDRGQALWDDAG 417 Query: 554 YSLTM----HDISEWKQEKNKLS 572 ++ M DI+E KQ + +L Sbjct: 418 KAIRMSGSHTDITERKQAEAELQ 440 >gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506] Length = 786 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 108/509 (21%), Positives = 195/509 (38%), Gaps = 19/509 (3%) Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 L T++ +Y L N F + + + L Sbjct: 13 REARLLRATLENMAQGVAMYDAEHRLVTWNQLFREYLDM-PEEFLGSEHTFEDYIRYLAL 71 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + R ++ L + P I Sbjct: 72 RGEFGEVDIEQTLARRIAQLKTSHRFERIRPDGTVLEVRRDPVPGG-------GFIAIYT 124 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILR 494 + + + + K+ + + +I A G+ I++ + +L N + +L G +++L Sbjct: 125 DITERKQAEMKLREDEERFRAIDAAAPVGLVIVDADDHTVLHLNPSFCELVGKQADEVLG 184 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 +P L L I+ + E + + + + Sbjct: 185 QPLDDVLHD---PANGDALVAIVDARSSERKEFQFIRPDGTTRWTMVSQVPLDFRGEKAV 241 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DIS+ + + +L AK+ AE S KS FLA +SHE+RTPL AIIG+SE++ Sbjct: 242 ICSFVDISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEILSEDA 301 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + + I +G +L ++ND+LD+SKIE+G+M+++ E V L V E ++ Sbjct: 302 ADDGNTAMVAD-LDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTI 360 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732 V + + +I + DL +KQ +N+LSNA FT G + + + Sbjct: 361 VGPMMQKNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKEG-TVTLRISRDAM 419 Query: 733 SNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V D+G+GMT ++ + + F Q +S GTGLGL + K V G Sbjct: 420 PDGSSAIRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGG 479 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + S +G+ I P+ P + Sbjct: 480 TIAVASEAGRGSTFTIELPVDAKGLPAEA 508 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 47/173 (27%), Gaps = 10/173 (5%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFK 112 +TD + + + E F V +DA + ++ + +G A + Sbjct: 123 YTDITERKQAEMKLREDEERFRAIDAAAPVGLV-IVDADDHTVLHLNPSFCELVGKQADE 181 Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++G L DV + + ++ +++ + +GT + + L Sbjct: 182 VLGQPLDDVLH--DPANGDALVAIVDARSSERKEFQFIRPDGTTRWTMVSQVPLDFRGEK 239 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 F + + +K + + Sbjct: 240 AVICSFV------DISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTP 286 >gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068] Length = 675 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 113/390 (28%), Positives = 201/390 (51%), Gaps = 12/390 (3%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 EN Q + E + R + + + ++ + +DGI +N + + N A +LF Sbjct: 117 ENPFQTALAAEIDERRRAEELLWNSQARWRAVFDNAADGIITLNESLQVETYNTAAQRLF 176 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GY E I+ ++ + L + + TL + + + + Sbjct: 177 GYSCEQIVGLQISLLMPGVE-------LDSSNAAAPQAGRRIETLCRRSDGSMFLADVSL 229 Query: 546 KKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 +P S Y + DI+ ++++ +L AK+ AE S K +FLA +SHEIRTP+TAI Sbjct: 230 GTVPQSKSHGYIAIIRDITRQRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAI 289 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GFS+++ + + P + E A + R+G +L ++ND+LD+SKIE+G++ + S Sbjct: 290 LGFSDLLIHDQRLQNEFPNWFESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCS 349 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 E V + L+ L A+EK + + SF +IP + D +KQ+ +N++ NA+ FTP G Sbjct: 350 PLEIVRDVCQLMSLKASEKDLTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPRG 409 Query: 723 G-QIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 QI + + + + + V DTG+GMT+ ++++ +PF Q S R GTGLGL + Sbjct: 410 SVQITVDIHSSGHATMLAVEVTDTGIGMTSAQIDRLFQPFTQADASTTRRFGGTGLGLVI 469 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +K +V+A G+ + S +G+ ++ PL Sbjct: 470 SKRIVEALGGQVSVVSQSGEGSTFRVLLPL 499 Score = 41.2 bits (95), Expect = 0.85, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 36/127 (28%), Gaps = 10/127 (7%) Query: 99 SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158 + + G +++G+++ + + +D +N R+ +T +G+ Sbjct: 169 NTAAQRLFGYSCEQIVGLQISLLMPGVELDSSNAAAPQAGRRI----ETLCRRSDGSMFL 224 Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 + L +P + I+ + + + K + Sbjct: 225 ADVSLGTVPQSKSHGYI------AIIRDITRQRRDQQELEEAKRAAESASHAKDEFLANM 278 Query: 219 KEKYDIF 225 + Sbjct: 279 SHEIRTP 285 >gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3] gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3] Length = 1200 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 121/594 (20%), Positives = 203/594 (34%), Gaps = 46/594 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + ++ + + P E + + + Sbjct: 350 PASRLLTHLEGCSQEPRKPPETITLGWEPWFQLVSRIFEENQQY------TRHLAEQNRR 403 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L D P F G N S Sbjct: 404 LDKLVARRTERLKETTERREREYA-----LLRSLFDSIPEAIVFKDKEGKYLGCNKSAER 458 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I L + A +L L Sbjct: 459 MLGYTESEMIGQESI--RLTTDEQSVRIKAEDERVLSERTPLRYQEKVELA------GKP 510 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + + ++ + + ++A DG+ + Sbjct: 511 VLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 570 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + E II N A + GY + L + + + Y + LS + + Sbjct: 571 DSEQII--CNPAYYSMLGYKSNEFPALVSTLDDLIHPDDRIRVEEYRDQYLSDPI-GAYD 627 Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K + + T DI+ K + + AK+ AE Sbjct: 628 IEFRMRGKSGHYHWVLSRGRVVEFTVDNQPKRMVGTHKDITRHKSNEVAMLEAKQDAESA 687 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + +KS+FLA +SHEIRTP+ AIIG ++ + P + +Y + S +L I+ Sbjct: 688 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP----QQEDYLDKAGFSAQSLLRII 743 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ L LD+ + A+ L L A +K + + IL D Sbjct: 744 NDILDFSKIEAGKLELERVGFPLDKVLDHALDLNALKAQQKGVELLLYAPVTAGLILEGD 803 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + Sbjct: 804 PLRLGQVLINMLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQA 860 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 861 SLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSEMGVGSTFSFTI 914 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLL 137 + D G ++ + +G +MIG + +D + +L Sbjct: 434 DSIPEAIVFK-DKEGKYLGCNKSAERMLGYTESEMIGQESIRLTTDEQSVRIKAEDERVL 492 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 + + +E V +D LP Y+R E G + R L Sbjct: 493 SERTPLRYQE---KVELAGKPVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 547 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252 ++ + ++ G + I + L K+ + S + H DD Sbjct: 548 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDD 607 Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 ++ E+Y L+ + + + + + ++ Sbjct: 608 RIRVEEYRDQYLSDPIGAYDIEFRMRGKSGHYHWVLSRGRVVE 650 >gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 701 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 100/429 (23%), Positives = 184/429 (42%), Gaps = 37/429 (8%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILS 476 + + M R ++ + + ++E ++ I +++ G + + Sbjct: 107 ALRQARSQAQMNAVAALQNYERLRESQDSLRQSEERYRLLVEGVTNYAIFMLDPNGNVTT 166 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKE 535 N ++ GY +I+ +PF ++L + + + K+ Sbjct: 167 WNIGAERILGYQEAEIIGQPFERVFSPEAIKQGLP--KQVLRKAVAEGFSRENRWHIRKD 224 Query: 536 EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKE---------- 581 +I L +S M DI+E KQ + + + Sbjct: 225 GTFFWAHCLITPLLDDDGNLRGFSKIMQDITERKQAEEEKEQLLLREQAARAVSEAAQSA 284 Query: 582 ----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 + K +FLA VSHE+RTP+TAIIG++ +++ G L + I+R+ NL Sbjct: 285 AEAANRSKDEFLAIVSHELRTPMTAIIGWAGMLQT---GVLDEAKATLALEIIERNANLQ 341 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 + ++ DLLDIS+I G+++L + V L E ++ AI +VQ AN K I + T +I +I Sbjct: 342 MQLIEDLLDISRIVRGELSLSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKI 401 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----------EEVILRVRDTGV 746 D ++Q+ LN+L+NAI FTP+GG++ + + + + V DTG Sbjct: 402 WGDSDRLQQVVLNLLTNAIKFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGK 461 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805 G++ L + F Q ++ +G GLGL +A +V+ + G S +G Sbjct: 462 GISPDFLPHVFERFWQADSTHTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFT 521 Query: 806 IIFPLYDTS 814 + P+ + S Sbjct: 522 VKLPILEES 530 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 34/311 (10%), Positives = 78/311 (25%), Gaps = 22/311 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D +G + + + +G ++IG V I L K + Sbjct: 155 IFMLDPNGNVTTWNIGAERILGYQEAEIIGQPFERVFSPEAIKQGLPKQVLRKAVAEGFS 214 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + W I + P+ + GF I+ ++L + Sbjct: 215 RENRWHIRKDGTFFWAHCLITPLLDDDGNLRGFSK--IMQDITERKQAEEEKEQLLLREQ 272 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + S + R K++ ++ + +L + Sbjct: 273 AARAVSEAAQSAAEA------------ANRSKDEFLAIVSHELRTPMTAIIGWAGMLQTG 320 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 L E + + + + +++ S + E E Sbjct: 321 V--LDEAKATLALEIIERNANLQMQLIEDLLDISRIVRGELSLSIDLVDLVEVITAAIEV 378 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 V + + S + L+ L +A K + N V Sbjct: 379 VQSLANAKDIQLE---TILDTSIEKIWGDSDR---LQQVVLNLLTNAIKFTPNGGRVEVR 432 Query: 386 LYRSDRTCIAA 396 L + + Sbjct: 433 LSKEMGSREEF 443 >gi|304312499|ref|YP_003812097.1| Response regulator receiver [gamma proteobacterium HdN1] gi|301798232|emb|CBL46454.1| Response regulator receiver [gamma proteobacterium HdN1] Length = 994 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 101/428 (23%), Positives = 204/428 (47%), Gaps = 12/428 (2%) Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 A + N ++ + A+ G +R R+++ +L Sbjct: 225 AVHFYGEPTKENSGLYISAFLVALAIASIAITVAMTVGALNSLFHSRELNREIQAARQRL 284 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ T D + I +G++ + + ++LFGY ++++ + + + + + + YL Sbjct: 285 EAVFSTTVDAMITITPKGMVQEFSPSATRLFGYLAQEVVGQNVKMLMPEPYRTEHDGYLQ 344 Query: 515 EILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKN 569 ++ R+ + + +G K+ + +R+ + + SS + + D+S+ K ++ Sbjct: 345 RYMTTRERRVIGIGREVVGLRKDGSIFPMRLAVGQADLSSGETLFVGMVSDLSQRKAMED 404 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A + AE+ ++ K+ FL +SHEIRTP+ AIIGF++V+ P + Y Sbjct: 405 SLREAAEHAERAAAAKTRFLGNMSHEIRTPMNAIIGFTDVLLQTELTP----KQRGYLTT 460 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +S +L ++ND+LD++K++SGK+ L SL + +++ A K ++ Sbjct: 461 VSQSSRTLLALLNDILDVTKLDSGKVVLESTDFSLRAVSELVDATLRVSAERKGLVFSCV 520 Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + +P D + Q+ N++ NAI FT SG ++ + + + +V ++V DTG+GM Sbjct: 521 YPDQVPEFFKGDSLRIGQVLTNLVGNAIKFTESG-EVRLLFGYE-SGQVHIQVSDTGIGM 578 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + PF Q S R GTGLG +++ +VD G+ + S KG++ + Sbjct: 579 SQAQAATIFDPFTQADASISRRFGGTGLGTTISRQLVDVMGGRIEVESELGKGSIFHVWL 638 Query: 809 PLYDTSHP 816 PL S P Sbjct: 639 PLAVGSKP 646 >gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1721 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 118/825 (14%), Positives = 263/825 (31%), Gaps = 104/825 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144 + D +G ++ K G +++G + H + + + T Sbjct: 733 IFTTDENGRFSFVNPVAQKISGYDETELLGRHFTMLIPPEHHEAVARFYGIQFTEKTPNT 792 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G V + I +N +GF+ + A + + Sbjct: 793 YYEMPMLRKDG--KRVWLGQNTGLIL-KNGRVAGFQ--VVARDITDRKQAEAALRAEVMR 847 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKT 256 + + + K DI + + L + LK Sbjct: 848 NRTITGTAQDAIVMIDPKGDISFWNPAAERMFGYTGQEALGQNLHRLLPPQRYHAAHLKA 907 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 T + + + ++ + + + + + + Sbjct: 908 FLQFQQTGMGDATGKTLELAALDKDGREFPIELSLSALRLDDGWHAVGIMRDITDRKRAE 967 Query: 317 EGENLTPETVDKCPIPF-----FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + E + V + ANP+ + SVD + Sbjct: 968 DKLRSAHERIHALMESVQAGIILVRKSDRVIVEANPAAARIADV-SVDALVGTPCQEHFC 1026 Query: 371 DAP-------KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 A L +YR+D + + ++ + E+ L +F+ + Sbjct: 1027 PAEIGRCPVFDLGQEVDNSERSVYRADGKHVPILKTVTSLSLDGEDYLLESFVDITDLKR 1086 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT---------SDGIAIINREGII 474 E + E + + + + ++ +E + +D + + + + Sbjct: 1087 AEEELRFQTRLQELLTEISTT-YISLPLDRMDVAVENSLGEMGIFVGADRVYLFDYDFEK 1145 Query: 475 LSTNRA--------VSKL-------FGYPVEDILRKPFTVFLEQNTPSVM--NHYLTEIL 517 N ++ F + + L + + + +L Sbjct: 1146 QVCNNTHEWCAAGIAPRIDTLQAIPFSAIPQWVNAHRQGKTLYIDDIKALTPEDGVRRLL 1205 Query: 518 S-LDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSC------YSLTMHDISEWKQEKN 569 ++ + + + + I + + ++ + +I + + + Sbjct: 1206 EPQGVQSMIAVPLMDNERCLGFAGFDSISALRHYSDAEKKLLTVFAQMLVNIRKRHEIEQ 1265 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A + A + KS+FLA +SHEIRTP+ I+G + ++ +A Sbjct: 1266 SLHQATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLLLETELTG----EQRRFAEI 1321 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +G+ +L+I+ND+LD SKIE+GK+ L SL++ + + + A++K I + Sbjct: 1322 VRNNGDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQAHKKGIELIYD 1381 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG------------------------- 723 P + D ++QI N++ NAI FT G Sbjct: 1382 IEPGTPSHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQIKTGEAVAADTVAETEAGAPD 1441 Query: 724 ------QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 ++ +S + V V+DTG+G++ ++E + F Q +S GTG Sbjct: 1442 VKSTEPEVAVSVSDNDAPAVTLLFSVKDTGIGISPEKIETIFESFTQADSSITRNFGGTG 1501 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 LGL +++ + GK ++ S P G+ P + + Sbjct: 1502 LGLTISRKLAGMLGGKLWVTSNPGAGSTFAFT---ARFEAPEEAV 1543 Score = 145 bits (366), Expect = 3e-32, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 87/321 (27%), Gaps = 15/321 (4%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 P + + + + + E E + V+ Sbjct: 672 PARAGLAAAFTGLLLTAAVTLVMVGYIRRRRQLEGLVAQRT--RSLRESEKRYAQIVENA 729 Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 F G + NP ++ Y + + + L+ + Sbjct: 730 NDTIFTTDENGRFSFVNPVAQKISGYDETELLGR--HFTMLIPPEHHEAVARFYGIQFTE 787 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + ++ + + N + + D + + + Sbjct: 788 KTPNTY---YEMPMLRKDGKRVWLGQNTGLILKN--GRVAGFQVVARDITDRKQAEAALR 842 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PS 507 EVM+ +I D I +I+ +G I N A ++FGY ++ L + L + Sbjct: 843 AEVMRNRTITGTAQDAIVMIDPKGDISFWNPAAERMFGYTGQEALGQNLHRLLPPQRYHA 902 Query: 508 VMNHYLTEILSLDL--RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISE 563 + + K+ + + + + L + M DI++ Sbjct: 903 AHLKAFLQFQQTGMGDATGKTLELAALDKDGREFPIELSLSALRLDDGWHAVGIMRDITD 962 Query: 564 WKQEKNKLSHAKKIAEKESSH 584 K+ ++KL A + Sbjct: 963 RKRAEDKLRSAHERIHALMES 983 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 38/427 (8%), Positives = 117/427 (27%), Gaps = 28/427 (6%) Query: 181 FGIVHVNRVDN----DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 G + R + +K+++ + E E + Sbjct: 695 VGYIRRRRQLEGLVAQRTRSLRESEKRYAQIVENANDTIFTTDENGRFSFVNPVAQKISG 754 Query: 237 KNKVSSLTEYY-----AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 ++ L ++ + + T + + + + + Q G Sbjct: 755 YDETELLGRHFTMLIPPEHHEAVARFYGIQFTEKTPNTYYEMPMLRKDGKRVWLGQNTGL 814 Query: 292 L---QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPS 347 + + + A + G++ + NP+ Sbjct: 815 ILKNGRVAGFQVVARDITDRKQAEAALRAEVMRNRTITGTAQDAIVMIDPKGDISFWNPA 874 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWN 406 + Y + + L LL + + + + + L + + Sbjct: 875 AERMFGYTGQEALGQN--LHRLLPPQRYHAAHLKAFLQFQQTGMGDATGKTLELAALDKD 932 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 A + + GI + D + + K+ ++ +++E+ GI Sbjct: 933 GREF---PIELSLSALRLDDGWHAVGIMRDITDRKRAEDKLRSAHERIHALMESVQAGII 989 Query: 467 IINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 ++ + I+ N A +++ V+ ++ P + ++ Sbjct: 990 LVRKSDRVIVEANPAAARIADVSVDALVGTPCQEHFCPAEIGRCPVFDLG------QEVD 1043 Query: 526 EKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + K + + + L + DI++ K+ + +L ++ E + Sbjct: 1044 NSERSVYRADGKHVPILKTVTSLSLDGEDYLLESFVDITDLKRAEEELRFQTRLQELLTE 1103 Query: 584 HKSDFLA 590 + +++ Sbjct: 1104 ISTTYIS 1110 >gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobotulus glycolicus DSM 8271] Length = 675 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 104/515 (20%), Positives = 197/515 (38%), Gaps = 30/515 (5%) Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + + G + N S LT + + G + + Sbjct: 9 ERLEFIAAAMAGMGDGVILTDRAGRILDINRSAEQLTGWTEKEAAGKPCG-EVFVLVDTV 67 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + PV + D + + + ++ + + Sbjct: 68 TGKRLESPVFISLRDEAPVGLPKHSALMTREGKTFF-ISASCSPVRASDGKAQGAVLVFR 126 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + +++ E L ++LEA GIA++ + ++ NR + +LF E+IL + Sbjct: 127 DIDRLKQIEEELKKERNNLNNVLEALPAGIALVGEDAVVRWVNRPLLELFQIREENILGQ 186 Query: 496 PFTVFLEQ-----------------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 F + L E +SL + + Sbjct: 187 RFGNGAHCIYSREKGCGEGEKCRFCEIRQNIGLVLREKVSLKDVMLQRSFHRAEEENCRW 246 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 L++ I L + DI+E K + L ++ AE + KS+FLA +SHEIRT Sbjct: 247 LNISFIPLAAAGEKRIVLAIEDITEQKNYEEALQKSRDEAESANRVKSEFLANMSHEIRT 306 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL ++G +++ + E S N + +++ +LD S+IE+GK+ + Sbjct: 307 PLNGLVGMMDLLSRTD----PDEEQQECIRMAKFSANTLFKVIDGILDFSRIEAGKIAIA 362 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 L + E I + + A +K + + ++P + D ++QI N++ NA+ Sbjct: 363 KISFDLKALLEEVIKIHTVLAEQKGLALEHDIPPDLPPYLTGDPDHLRQILNNLIGNALK 422 Query: 718 FTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G QI +S ++ E+ V D+GVG++ +++ K F Q+ +S R G Sbjct: 423 FTDRG-QIKVSVREIRHQGQQVELEFCVADSGVGISPGKMDLLFKRFSQVDSSVTRRYSG 481 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 TGLGL + K + + G S KG++ Sbjct: 482 TGLGLAICKQLAELMGGAIRAESEMGKGSVFRFTL 516 Score = 45.8 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 43/148 (29%), Gaps = 10/148 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTW- 143 D G + +I+ + G + G +V ++ + L+ + Sbjct: 28 TDRAGRILDINRSAEQLTGWTEKEAAGKPCGEVFVLVDTVTGKRLESPVFISLRDEAPVG 87 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + L EG ++ + P+ + + + G + K+ Sbjct: 88 LPKHSALMTREGKTFFIS--ASCSPVRASDGKAQGA--VLVFRDIDRLKQIEEELKKERN 143 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 +++ E ++ E + P Sbjct: 144 NLNNVLEALPAGIALVGEDAVVRWVNRP 171 >gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris str. B100] gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas campestris pv. campestris] Length = 1364 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 115/638 (18%), Positives = 224/638 (35%), Gaps = 41/638 (6%) Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S++ S + + + T ++ P Sbjct: 245 ESTLGDRDDVAISLSDREDTQHTFYRSGIAAPESMRRAAHTQLLPIYGRTWVLTARPTLH 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + L N + L Sbjct: 305 FIGSLNQNSPWLMGSLVLGTAILLAALLGLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPV 384 G + + NP+ + Y + I + + Sbjct: 365 AETPDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ 424 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + D + A I +N+++ F ++ + + ++ ++ + Sbjct: 425 TMRHRDGHQVFVLASKAPI-IEHDNAVSGHSHFFRDISERVRSHQRIVDLNASLEHQVAE 483 Query: 445 R--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 R ++ + +IL I + G + N A KL GY +D++ + Sbjct: 484 RTSELVQFSVLQRAILAHAGYAIIATDSNGFVTMFNPAAEKLLGYSADDVIGRRKASQFI 543 Query: 503 QNTPSVMNHY-LTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKL 548 + L E + TLE +++ + L + + + L Sbjct: 544 EADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTL 603 Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + Y D++E K + +L A A + KSDFLA +SHEIRTP+ AI+ Sbjct: 604 RDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAIL 663 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +++ + IDRS +L+I+ND+LD SKIE+G+++L P L Sbjct: 664 GMLYLLQRSELPGAA----QDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDL 719 Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ L++ + K + + +L D + Q+ +N++ NAI FT G Sbjct: 720 NQLFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQG- 778 Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++++S + + ++ VRDTG+G++ + PF Q S R G+GLGL Sbjct: 779 EVVLSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGL 838 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +++ +++ G + S P +G+ + L T P Sbjct: 839 TISRRLIELMGGALEVESVPGRGSEFYFVITLERTDPP 876 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 36/382 (9%), Positives = 87/382 (22%), Gaps = 26/382 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-------LHIDPNNHIGDLLKRQNTW 143 G + + G A IG L + + D + L Q Sbjct: 368 PDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ--- 424 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 T+ +G V + + PI + SG F L+ Sbjct: 425 ----TMRHRDGHQ--VFVLASKAPIIEHDNAVSGHSHF--FRDISERVRSHQRIVDLNAS 476 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 H ++ + S + + + + + + + + + L + Sbjct: 477 LEH--QVAERTSELVQFSVLQRAILAHAGYAIIATDSNGFVTMFNPAAEKLLGYSADDVI 534 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E +Q + + S + + + Sbjct: 535 GRRKASQFIEADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRL 594 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + + + LT+ K + + SD A Sbjct: 595 PVLLTLST--LRDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMS 652 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + L + +T I + + + Sbjct: 653 HEIRTPMNAILGMLYLLQRSELPGAAQDMVTKIDRSARS----LLEIINDILDFSKIEAG 708 Query: 444 KRKMEIEVMQLCSILEATSDGI 465 + +E L + + +D + Sbjct: 709 RIDLERAPFDLNQLFDNIADLM 730 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 63/284 (22%), Gaps = 25/284 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145 D++G++ + K +G A +IG R + + G Sbjct: 509 TDSNGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLE 568 Query: 146 -----------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + N + G+ G + Sbjct: 569 AVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306 + ++ + E I+L + + S + E + Sbjct: 687 RSARSLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 746 LPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-2] Length = 1331 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.092, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.50, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|300866806|ref|ZP_07111485.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300335188|emb|CBN56645.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 740 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 96/401 (23%), Positives = 181/401 (45%), Gaps = 34/401 (8%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKP 496 + + + E + +++E SD I + + + IL N A L GY + DIL Sbjct: 344 AEIEQAESEQIEERARYRAVVEQASDSIFLFDAKTKRILEANTAFINLLGYTLNDILNLT 403 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554 +N + ++ R+ + ++ L+ + + + + Sbjct: 404 VYDITVH-DKDTVNRNIELLIRRKQRRLG--EVIYCRRDGSLVDVEVNANLISYGGREII 460 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI++ K+ ++ AK+ AE + KS FLA +SHE+RTPL AIIG+SE+++ Sbjct: 461 CTVVRDITDRKRVLEEMYKAKEAAEAANLAKSQFLANMSHELRTPLNAIIGYSEMLQEDA 520 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 LG ++ I ++G +L +++++LD+SKIE+G+M + + + + ++ Sbjct: 521 ED-LGEEEFVCDVKNIYKAGKHLLGLIDEILDLSKIEAGRMEMELMTFDVRATIRDVVAT 579 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732 V+ + + + +I + +D V+QI N+LSNA FT G I ++ + Sbjct: 580 VEPLLIKNANRLNVQYGEDIGFMHSDQTKVRQILFNLLSNAAKFTHDG-TISLTVSRERV 638 Query: 733 ------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 + +I DTG+GM++ +L++ +PF Q S Sbjct: 639 AIESEKLKDRESDVENDLSKTLIADYDFLIFNCTDTGIGMSSEQLQRLFQPFMQADPSTT 698 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL +AK + G+ + S KG+ +I P Sbjct: 699 RKYGGTGLGLAIAKKFCEMMGGEITVKSELGKGSTFTVIIP 739 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 54/180 (30%), Gaps = 18/180 (10%) Query: 46 HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105 + + + + + S++ F+FD + + E + Sbjct: 344 AEIEQAESEQIEERARYRAVVEQASDSIFLFDAKTK------------RILEANTAFINL 391 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 +G ++ + + D++ N +I L++R+ G+ +G+ V +++ A Sbjct: 392 LGYTLNDILNLTVYDITVHDKDTVNRNIELLIRRKQRRLGEVIYCRRDGSL--VDVEVNA 449 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 I RE +V + + + K + + Sbjct: 450 NLISYGGREII----CTVVRDITDRKRVLEEMYKAKEAAEAANLAKSQFLANMSHELRTP 505 >gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae B33] gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9] gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33] gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236] gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MO10] gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101] gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1] Length = 1331 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.092, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.50, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 579 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 173/372 (46%), Gaps = 23/372 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNQMLRRLYH 280 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 E + + +I + ++ E + + + P L Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 HD++E K+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ + I + + +V DLLD+SKIE L E + + E +L++ Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK I ++ + + + D +KQ+ LN+++NA+ +TP GG + I+ T + Sbjct: 441 HKADEKGISLQLNLPKDPLYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKD- 499 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKS 559 Query: 797 TPAKGTLIEIIF 808 P +GT+ + Sbjct: 560 EPGRGTVFTVTL 571 >gi|220908983|ref|YP_002484294.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865594|gb|ACL45933.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1808 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 133/797 (16%), Positives = 270/797 (33%), Gaps = 91/797 (11%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCD------VSDILHIDPNNH----IGDLLKRQNTW 143 ++ IS + G + G+ + + V I P ++ + +++ Sbjct: 886 TIRRISRYGQQLTGRSLDVIEGIPVEEHTEKWGVFYPDGITPASNEMLPLTRAVQQGEVV 945 Query: 144 YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + L GT + + A PIY N E +G G + + L K Sbjct: 946 TDEEWVLQQPNGT--KITVLCNAGPIY-VNGEITG--GVVVWRDISDRKWREQQQEYLLK 1000 Query: 203 KFSHLHEIKKG-------------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 L + H ++ Y + ++ ++ + +L+ H Sbjct: 1001 LNDALRPLSDAVEIEAIACRLLGEHLGIDHVFYAMLNEAEGYWNIPWQYSRGTLSMVGNH 1060 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTI------------------------------- 278 P L + + E D I Sbjct: 1061 PASAYSW-ALPFLRCGDPVIIEDIDHSDIIPSADVAAMAAIQTFAIVSIPLIKGGTLIGT 1119 Query: 279 -----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 N + + + ++ ++ ++ + N V+ P Sbjct: 1120 LSVTNNAPRVWQPEEVELVRETAERTWAAV---ERARAEMLLRASHNTFRHLVENSPFGV 1176 Query: 334 FVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 +V L + + ++V + L L + + +T Sbjct: 1177 YVIDADFRLAQVSAGAQKVF--ENVRPLIGRDFAEVL-QIIWLEPFASEAITHFRHTLKT 1233 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 A + + + E+ + + + + Sbjct: 1234 GEPYHAPSIVERRQDTDEVESYDWKIERITLPDGRFGVVCHFYDLSERLHYEAALRDSEE 1293 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + ++ + S + + G I NR + G +E++ + + + + Sbjct: 1294 RFRNLADHMSQLAWMADEHGWIFWYNRRWFEYTGTTLEEMQGWGWQAVHHPDHVDRVVQH 1353 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN 569 + + G + + R I + S + T DI+E KQ + Sbjct: 1354 IRHCFEMGEVWEDTFPLRGHDGQYRWFLSRAIPIRDQESGQILRWFGTNTDITERKQAEQ 1413 Query: 570 KLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + A+ AE+ + K +FLA +SHE+R+PL I+G+++++++++F P + Sbjct: 1414 ERQRLLEQEQAARAEAERANQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFDPT---K 1470 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E I+R+ L +++DLLDI+KI GK+ ++ PV L + AI ++ A K Sbjct: 1471 TNEALATIERNAKLQTQLIDDLLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMRTAAVAK 1530 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + I R+ D ++QI N+LSNAI FTP+ G + + + + + Sbjct: 1531 EMTLHAVL-PQIGRVSGDSARLQQIVWNLLSNAIKFTPAKGVVEVRLERE-GDRAKITIS 1588 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801 DTG G+ L + F Q S + G GLGL + + +V+A+ G S +G Sbjct: 1589 DTGKGINPDFLPHLFESFRQEDASTTRQYGGLGLGLAIVRHLVEAHGGTIRAESPGEGQG 1648 Query: 802 TLIEIIFPL--YDTSHP 816 + FPL ++ P Sbjct: 1649 ATFIVQFPLLNAESEQP 1665 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 58/563 (10%), Positives = 135/563 (23%), Gaps = 48/563 (8%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 N D + + +SE+ F F +S + G + Sbjct: 455 NDIDITERKQAEIALQESESRFRQLTENIDAVFWMREVTESRASYVSPAYERLWGLNPQE 514 Query: 113 MIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 + + +P + + + + G + P+ + Sbjct: 515 LYENQQAWVNYIHPDDREPVYRAFQAKAAEGLFDEEYRIILPNG--QIRWVHDRCFPLRN 572 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 R +R GI ++ +++F E ++ Y + Sbjct: 573 EARAL--YRFTGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFAI----YQSIRNEQG 626 Query: 231 PPHLRMKNKV--SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 V ++ ++ + LL S E + Q K+ Sbjct: 627 EIVDFRTEYVNDAACLNNQMTREQQIGRGLCELLPGHRDSGLFDEYCQVVETGQALVKEN 686 Query: 289 F-----------------GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + + E E D + Sbjct: 687 LIYEDDYGQQHLTRAFDIRVAKLEDGFIATWRDITDRKRAEVKLLESERQLRIAKDAAAL 746 Query: 332 PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 Y + L + I T D A + + D Sbjct: 747 GIHDYGITSGTIQWDSRVRELWGVGPDEPI----TYETFFSGLHPEDRAATQAAVNRALD 802 Query: 391 RTCI-AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 A I + + + G + ++ +++ + Sbjct: 803 PRGDGKYDAEYRVIHRTDGLTRWIAATGIAIFEHE-RAVRLVGTVQDITARKLAEQEAQE 861 Query: 450 EVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP-------FTVFL 501 L +++E +GI I + I +R +L G ++ I P + VF Sbjct: 862 GKQILDALMEYIPEGITIADAPNVTIRRISRYGQQLTGRSLDVIEGIPVEEHTEKWGVFY 921 Query: 502 EQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 N L + ++ + +++ + + + Sbjct: 922 PDGITPASNEMLPLTRAVQQGEVVTDEEWVLQQPNGTKITVLCNAGPIYVNGEITGGVVV 981 Query: 558 MHDISEWKQEKNKLSHAKKIAEK 580 DIS+ K + + + K+ + Sbjct: 982 WRDISDRKWREQQQEYLLKLNDA 1004 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 62/519 (11%), Positives = 122/519 (23%), Gaps = 47/519 (9%) Query: 96 KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152 + S L G G D + + + + + Sbjct: 369 IQWSANLEAMFGLEPGAFDGSFEMFTRFLHPDDRDRVLAAVEQAISTGEDYTIEFRVVYP 428 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 GT Y N + G I + + +F L E Sbjct: 429 NGT--VRWALSQGKVFYGLNGQPVRMTGNDI--DITERKQAEIALQESESRFRQLTENID 484 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRM---KNKVSSLTEY---YAHKDDVLKTEKYPLLTSEE 266 + + S SP ++ + Y H DD + + E Sbjct: 485 AVFWMREVTESRASYVSPAYERLWGLNPQELYENQQAWVNYIHPDDREPVYRAFQAKAAE 544 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLT 322 E+ N L+N ++ + + + + E Sbjct: 545 GLFDEEYRIILPNGQIRWVHDRCFPLRNEARALYRFTGIAEDITDRKGSEQTLQKSEERF 604 Query: 323 PETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 +V+ F +Y Y N + L + I GL LL Sbjct: 605 RTSVENMLDCFAIYQSIRNEQGEIVDFRTEYVNDAACLNNQMTREQQIGR--GLCELL-- 660 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P D+ + ++ Sbjct: 661 PGHRDSGLFDEYCQVVETGQALVKENLIYEDD-----YGQQHLTRAFDIRVAKLEDGFIA 715 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPV 489 + D + + K+ QL +A + GI + G I + V +L+G Sbjct: 716 TWRDITDRKRAEVKLLESERQLRIAKDAAALGI--HDYGITSGTIQ-WDSRVRELWGVGP 772 Query: 490 ED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKK 547 ++ I + F L + + L + + + + Sbjct: 773 DEPITYETFFSGLHPEDRAATQAAVNRALDPRGDGKYDAEYRVIHRTDGLTRWIAATGIA 832 Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + T+ DI+ K + + K+I + Sbjct: 833 IFEHERAVRLVGTVQDITARKLAEQEAQEGKQILDALME 871 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 45/421 (10%), Positives = 104/421 (24%), Gaps = 27/421 (6%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVS 241 A + +++ E + + + L Sbjct: 329 TELAERKRVEAELRASEERLRSALEASRMGTWDWNIETGQIQWSANLEAMFGLEPGAFDG 388 Query: 242 SLTEY--YAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 S + + H DD S + N + + Sbjct: 389 SFEMFTRFLHPDDRDRVLAAVEQAISTGEDYTIEFRVVYPNGTVRWALSQGKVFYGLNGQ 448 Query: 299 SFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352 E E+ + + F++ Y +P++ L Sbjct: 449 PVRMTGNDIDITERKQAEIALQESESRFRQLTENIDAVFWMREVTESRASYVSPAYERLW 508 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + E + D + ++ R I Sbjct: 509 GLNPQELYENQQAWVNYIHPD---DREPVYRAFQAKAAEGLFDEEYR---IILPNGQIRW 562 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---- 468 + F N+ GI + D + +++ ++ + + +E D AI Sbjct: 563 VHDRCFPLRNEARALYRFTGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFAIYQSIR 622 Query: 469 NREGIIL-----STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 N +G I+ N A E + + L + S + +++ Sbjct: 623 NEQGEIVDFRTEYVNDAACLNNQMTREQQIGRGLCELLPGHRDSGLFDEYCQVVETGQAL 682 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 E + ++ L+ I+ + T DI++ K+ + KL +++ Sbjct: 683 VKENLIYEDDYGQQHLTRAFDIRVAKLEDGFIATWRDITDRKRAEVKLLESERQLRIAKD 742 Query: 584 H 584 Sbjct: 743 A 743 Score = 94.3 bits (233), Expect = 8e-17, Method: Composition-based stats. Identities = 29/344 (8%), Positives = 95/344 (27%), Gaps = 20/344 (5%) Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + LL + + P + I+L + Q L+ + A Sbjct: 283 GLWGLLIAHHCAAPRLWESLEISLLKELAAQLGIALRQAELYQQSQTELAERKRVEAELR 342 Query: 317 EGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E ++ + + + G + + + + + + + + T P Sbjct: 343 ASEERLRSALEASRMGTWDWNIETGQI-QWSANLEAMFGLEP-GAFDGSFEMFTRFLHPD 400 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D + V S + + + + G + Sbjct: 401 DRD-RVLAAVEQAISTGEDYTIE---FRVVYPNGTVRWALSQGKVFYGLNGQPVRMTGND 456 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDI 492 + + + + ++ + + E D + + E + A +L+G +++ Sbjct: 457 IDITERKQAEIALQESESRFRQLTENI-DAVFWMREVTESRASYVSPAYERLWGLNPQEL 515 Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ + ++ + + + ++ ++ + L Sbjct: 516 YENQQAWVNYIHPDDREPVYRAFQAKAAEG---LFDEEYRIILPNGQIRWVHDRCFPLRN 572 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + ++ DI++ K + L +++ + D A Sbjct: 573 EARALYRFTGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFA 616 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 9/186 (4%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D ++ DSE F + + W D HG++ + + G +M Sbjct: 1275 FYDLSERLHYEAALRDSEERFR-NLADHMSQLAWMADEHGWIFWYNRRWFEYTGTTLEEM 1333 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTN-LYVPIDLAALPIYS- 170 G V H+D HI + W +P+ G + Y A+PI Sbjct: 1334 QGWGWQAVHHPDHVDRVVQHIRHCFEMGEVWED---TFPLRGHDGQYRWFLSRAIPIRDQ 1390 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + + R FG +RL ++ + + ++ E I S + Sbjct: 1391 ESGQI--LRWFGTNTDITERKQAEQERQRLLEQEQAARAEAERANQIKDEFLAILSHELR 1448 Query: 231 PPHLRM 236 P + Sbjct: 1449 SPLNPI 1454 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 48/420 (11%), Positives = 114/420 (27%), Gaps = 31/420 (7%) Query: 49 FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 + + + S NTF + IDA L ++S K N Sbjct: 1140 ETAERTWAAVERARAEMLLRASHNTFRHLVENSPFG-VYVIDADFRLAQVSAGAQKVFEN 1198 Query: 109 YAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 +IG +V I+ ++P H LK ++ + + + T+ D Sbjct: 1199 VRP-LIGRDFAEVLQIIWLEPFASEAITHFRHTLKTGEPYHAPSIVERRQDTDEVESYDW 1257 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE-KY 222 I + F F + A + +++F +L + + + E + Sbjct: 1258 KIERITLPDGRFGVVCHF---YDLSERLHYEAALRDSEERFRNLADHMSQLAWMADEHGW 1314 Query: 223 DIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTIN 279 + + + ++ H D + + E ++ F + Sbjct: 1315 IFWYNRRWFEYTGTTLEEMQGWGWQAVHHPDHVDRVVQHIRHCFEMGEVWEDTFPLRGHD 1374 Query: 280 LNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 +++ S + + + ++ E Sbjct: 1375 GQYRWFLSRAIPIRDQESGQILRWFGTNTDITERKQAEQERQRLLEQEQA-----ARAEA 1429 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 FL + ++ + G + LL + K + + I +A Sbjct: 1430 ERANQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFDPTKTNEALA-------TIERNA 1482 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 +L T + + + +P + + + + M L ++L Sbjct: 1483 KLQTQLIDD----LLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMRTAAVAKEMTLHAVL 1538 >gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21] Length = 1331 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.093, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.50, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium] Length = 834 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 142/758 (18%), Positives = 267/758 (35%), Gaps = 58/758 (7%) Query: 91 AHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSD-ILHIDPNNHIGDLL--KRQNTWYGK 146 G + + G ++ G L ++ H D I +L R+ + Sbjct: 96 REGKVLYANSAAATLFGAEKMYEIEGRPLLELFHLQSHADVVLRIDELKVGARRVLPSAE 155 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-------GIVHVNRVDNDPRALGKR 199 + ++GT L V +G F +V ++ Sbjct: 156 LKVQRLDGTQLDVE-------------AVTGLSSFQGSVAYQTVVRDISKRRQVEEHLRK 202 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L + + K + + + ++V L ++ Sbjct: 203 LSRAVEQSASSVC--ITDTKGTIEFVNPRFAELSGYDADEVVGLNPRILKSGELGSEAYN 260 Query: 260 PLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 L ++ + + +FH + + Y ++N +L+ + S +E Sbjct: 261 DLWSTISAGREWRGEFHNRRKDGSLYWVSASISPVRNAEGAITHFLAIEDDISGQKRSEE 320 Query: 318 GEN-----------LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + ++ F + + N ++L ++ Sbjct: 321 LLREARDWAAGAQERLTDAIESISEAFILCDADDRVILWNANYLDFYP-----ELRTVLD 375 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF---IPFEKAN 422 + L A + RL + N + Sbjct: 376 VGVPF--EDLVRAFAATGAPADAATDPEAWIRKRLIQHRLADGNPHVQRLGDGRWLLVSE 433 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + ++ + + +EA G+ N + + + Sbjct: 434 NRTSEGGIVSVRTDITERMQAEKALRRSEERYELAVEAGKVGVWDWNIKTGEMYIAPKLK 493 Query: 483 KLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + GY ++ + + + + L + E K Sbjct: 494 AMLGYEDTEVPNRFEAWMELVHAEDRPHVKAATAAHLEGRTER-HEVRYRRVHKNGSSYW 552 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + T DI + + L AK AE + K++FLA +SHE+ Sbjct: 553 FKASGVVQRDTQGRPERMAGTDADIIDHVLTEAALRAAKDNAEVANRAKTEFLANMSHEL 612 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL +IIGFS+++ NQ FGP+G P Y+EYA I+ +G+ +L ++ND+LD+S+IE ++ Sbjct: 613 RTPLNSIIGFSDILVNQSFGPMGVPEYVEYARDINSAGSHLLSLINDILDVSRIEVEALS 672 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L+ + + + LV A ++ + P + AD R VKQ+ LN+L+N+ Sbjct: 673 LNEQRIDAAHMANSCQRLVLDRAKRAKLNLVLDMPKQFPAALYADERRVKQVLLNLLANS 732 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I FT GG + + + V DTG+G+ ++E AM FGQ+ +S R EG G Sbjct: 733 IKFTEPGGTVTLKGMLDEEGRFVFAVADTGIGIAPEDIEAAMSTFGQVDSSFTRRYEGAG 792 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 LGLPL+K +V+ + G + S P GT + I FP T Sbjct: 793 LGLPLSKKLVELHGGGLSLESQPGVGTTVTIRFPKERT 830 Score = 123 bits (310), Expect = 8e-26, Method: Composition-based stats. Identities = 47/315 (14%), Positives = 104/315 (33%), Gaps = 18/315 (5%) Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSL--SAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342 + +F L++ + L + D G + ++ P V+ G + Sbjct: 42 AEPFFERLEDVLSATGITLLVVIGLAFFGLRAIDAGRRQFQDLIELAPDAILVHREGKVL 101 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 YAN + L + + +IE L L + + ++ L R + SA L Sbjct: 102 YANSAAATLFGAEKMYEIEGRPLLE--LFHLQSHADVVLRIDELKVGARRVLP-SAELKV 158 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + + F ++ + + R + + +L +E ++ Sbjct: 159 QRLDGTQ---LDVEAVTGLSSFQGSVAYQTVVRDISKRRQVEEHLR----KLSRAVEQSA 211 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 + I + +G I N ++L GY ++++ + S + L +S Sbjct: 212 SSVCITDTKGTIEFVNPRFAELSGYDADEVVGLNPRILKSGELGSEAYNDLWSTISAGRE 271 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 K+ L + I + + + DIS K+ + L A+ A Sbjct: 272 WRG--EFHNRRKDGSLYWVSASISPVRNAEGAITHFLAIEDDISGQKRSEELLREARDWA 329 Query: 579 EKESSHKSDFLARVS 593 +D + +S Sbjct: 330 AGAQERLTDAIESIS 344 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 36/385 (9%), Positives = 92/385 (23%), Gaps = 30/385 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 D G ++ ++ + G A +++G+ + S L + N + + W G+ Sbjct: 217 TDTKGTIEFVNPRFAELSGYDADEVVGLNPRILKSGELGSEAYNDLWSTISAGREWRGEF 276 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL------- 200 +G+ + + P+ + + F I L + Sbjct: 277 HNRRKDGSLY--WVSASISPVRNAEGAITHF--LAIEDDISGQKRSEELLREARDWAAGA 332 Query: 201 -DKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 ++ + I + + + I P LR V E Sbjct: 333 QERLTDAIESISEAFILCDADDRVILWNANYLDFYPELRTVLDVGVPFEDLVRAFAATGA 392 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-------LQNNSKESFEYLSHRNHP 309 E + N + ++ G + Sbjct: 393 PADAATDPEAWIRKRLIQHRLADGNPHVQRLGDGRWLLVSENRTSEGGIVSVRTDITERM 452 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E V+ + + ++ G + Y P + Y+ + + Sbjct: 453 QAEKALRRSEERYELAVEAGKVGVWDWNIKTGEM-YIAPKLKAMLGYEDTE-VPNRFEAW 510 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L + + + R + N + + + Sbjct: 511 MELVHAEDRPHVK--AATAAHLEGRTERHEVRYRRVHKNGSSY-WFKASGVVQRDTQGRP 567 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVM 452 G + + +D + + + Sbjct: 568 ERMAGTDADIIDHVLTEAALRAAKD 592 >gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 2453 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 110/641 (17%), Positives = 244/641 (38%), Gaps = 33/641 (5%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-----NKVSSL 243 A + + +F L + + + EK IF Sbjct: 1665 ERARAEAALRESEARFRDLADNMSQFAWMADEKGFIFWYNQRWFEYTGTTLEEMQGWGWK 1724 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 ++ D + + E+ + + +++ S + + Sbjct: 1725 KVHHPEHVDRVVKRIQHSWDTGET-WEDTFPIRSKEGEFRWFLSRAVPIRDASGKILRWF 1783 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNL-FYANPSFLLLTKYKSVD 358 + + ++ + + + + Y + L+ + Sbjct: 1784 GTNTDITSTREQEQRVRASEARLRLAMQAANLSLWQWDIDKDKIYWSHDSHELSSMEPRQ 1843 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + ++ L A T + + + + Sbjct: 1844 AVGGLQH----FLNLVHRNDREAVEHSLRSCLSNGKPFQAEFRT-RKSENTYAWVLSTAY 1898 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + G+ + + + ++ ++++ +L + E+ G+ I+ + + Sbjct: 1899 LTTDSTDNSTVMVGVNLDITERKKSELEIKLSEERLRNAAESAGFGMLHIDLLEETTAFS 1958 Query: 479 RAVSKLFGYP---VEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGST 533 + ++ G P ++ ++ S +L E L Q+L+ + Sbjct: 1959 PEMKRMLGLPDNAENNLKFGEVPDWIHPKDRSAYRKHLQESAALPEGKNQSLDHRIIRPD 2018 Query: 534 KEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 E + + L S T+ DI+ +Q + L A+++AE + KS F Sbjct: 2019 GETRWVRLHARPVFTGKGSRRKATQLIGTLLDITSQRQFEQSLKEARQMAEAANESKSAF 2078 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+TAI+G+ + + ++ + + Y + + R+G +LDI+ND+LD+S Sbjct: 2079 LANMSHEIRTPMTAIMGYID-LIDEL---IDHKIATAYLSTVRRNGEFLLDIINDILDLS 2134 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707 KIE+GK+++ E S + + + S++ + A E R+ + + IP I +D + +KQI Sbjct: 2135 KIEAGKLDIIRERFSPHQLLEDVCSIMDVRAAENRLELDIFYYGKIPAEIESDPKRLKQI 2194 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +N++ NAI FT G + I + ++ + DTG+G+T + ++ +PF Q ++ Sbjct: 2195 LINLVGNAIKFTMKGS-VKIFVSCNDQ-QLQFIIVDTGIGITTRQQKRLFRPFSQGDHTV 2252 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL +++ + + G+ + S KG+ + Sbjct: 2253 NREFGGTGLGLAISQRLANMLGGEICVESEKDKGSKFTVTI 2293 Score = 121 bits (304), Expect = 5e-25, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 8/303 (2%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 + LQ + + + A + ++ + + Sbjct: 1214 REAYQWRPDELKLLQEITNRLCIRIERARAEAELADREAHLRRVIN--NQLGLVGVIGRD 1271 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G L + + + D I + + ++ M + Sbjct: 1272 GRLLEVDDDSMKIAGLTREDVI-GKHFAECAWWTYDEAVSQKMRESMQKAFAGEVVRYDV 1330 Query: 399 RLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L E L + F+ N+ E + + + + +L S+ Sbjct: 1331 PLFAAGLGGAERRLMIDFMMAPVFNKNGEVEYLIPSGVDISERVAVENLHKETAARLESM 1390 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + DG+ IN G + S N A LFGY +E++ + + + S + YL L Sbjct: 1391 FNSAVDGMITINAAGNMDSINPAALDLFGYELEELQGQNVNMLMPDPWHSEHDSYLNAYL 1450 Query: 518 SLDLRQTLE--KITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSH 573 + + + LG K+ ++ + + + + + T+ DISE KQ + L+ Sbjct: 1451 KTGQAKIIGSKREVLGLRKDGSTFAMELAVSEAYMRGEILFVGTVRDISERKQRELNLAF 1510 Query: 574 AKK 576 + Sbjct: 1511 IDE 1513 Score = 99.7 bits (247), Expect = 2e-18, Method: Composition-based stats. Identities = 67/559 (11%), Positives = 166/559 (29%), Gaps = 64/559 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGK 146 I G L E+ ++ K G +IG + + + + ++ Q + G+ Sbjct: 1268 IGRDGRLLEVDDDSMKIAGLTREDVIGKHFAECA---WWTYDEAVSQKMRESMQKAFAGE 1324 Query: 147 TTLWPI-------EGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALG 197 + + G + ID P++++N E G I V+N + Sbjct: 1325 VVRYDVPLFAAGLGGAERRLMIDFMMAPVFNKNGEVEYLIPSGVDISERVAVENLHKETA 1384 Query: 198 KRLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK- 250 RL+ F+ + S+ D+F + + N + + H Sbjct: 1385 ARLESMFNSAVDGMITINAAGNMDSINPAALDLFGYELEELQGQNVNMLMPDPWHSEHDS 1444 Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ----------YFGTLQNNSKE 298 + LKT + ++ S+ L ++D T + + + + Sbjct: 1445 YLNAYLKTGQAKIIGSKREVLGLRKDGSTFAMELAVSEAYMRGEILFVGTVRDISERKQR 1504 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 L E + +T + V + + + Y++ + Sbjct: 1505 ELNLAFIDELQLLLGAPLLIEEIMQQTCARITDFLGVSRCLLIELDTEAEIADVVYEAHE 1564 Query: 359 ----DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 DI ++ L+ + A +P+++ + + + + + L + Sbjct: 1565 SGLSDISGRHTITNFLEEQEQEPLLAGQPILIGDTQNHHRISKRTKNFAALDIGSLLLIP 1624 Query: 415 FI-------PFEKANQFPENMPQNGI---------EPEDVDTRINKRKMEIEVMQLCSIL 458 F+ NQ P I ++ + + + + Sbjct: 1625 FVSEKRLKFVLTICNQQPCQWQAVVIDLLQELTPRIFVRLERARAEAALRESEARFRDLA 1684 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + S + + +G I N+ + G +E++ + + + Sbjct: 1685 DNMSQFAWMADEKGFIFWYNQRWFEYTGTTLEEMQGWGWKKVHHPEHVDRVVKRIQHSWD 1744 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574 +T E +KE + + +S + T DI+ ++++ ++ + Sbjct: 1745 TG--ETWEDTFPIRSKEGEFRWFLSRAVPIRDASGKILRWFGTNTDITSTREQEQRVRAS 1802 Query: 575 KKIAEKESSHKSDFLARVS 593 + A +S Sbjct: 1803 EARLRLAMQA-----ANLS 1816 Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 43/416 (10%), Positives = 94/416 (22%), Gaps = 20/416 (4%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 + + + +SE F D +F W D G++ ++ + G +M G Sbjct: 1665 ERARAEAALRESEARFR-DLADNMSQFAWMADEKGFIFWYNQRWFEYTGTTLEEMQGWGW 1723 Query: 119 CDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 V H+D I TW + EG + A+PI + + Sbjct: 1724 KKVHHPEHVDRVVKRIQHSWDTGETWEDTFPIRSKEGE--FRWFLSRAVPIRDASGKI-- 1779 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPP 231 R FG + + + + + D S Sbjct: 1780 LRWFGTNTDITSTREQEQRVRASEARLRLAMQAANLSLWQWDIDKDKIYWSHDSHELSSM 1839 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + + D S + Sbjct: 1840 EPRQAVGGLQHFLNLVHRNDREAVEHSLRSCLSNGKPFQAEFRTRKSENTYAWVLSTAYL 1899 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANP 346 +++ S + + + L+ E + + +P Sbjct: 1900 TTDSTDNSTVMVGVNLDITERKKSELEIKLSEERLRNAAESAGFGMLHIDLLEETTAFSP 1959 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + + G PK + + S I+ + Sbjct: 1960 EMKRMLGLPDNAENNLKFGEVPDWIHPKDRSAYRKH-LQESAALPEGKNQSLDHRIIRPD 2018 Query: 407 RENSLA-MTFIPF-EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 E + P + G + R ++ ++ + E+ Sbjct: 2019 GETRWVRLHARPVFTGKGSRRKATQLIGTLLDITSQRQFEQSLKEARQMAEAANES 2074 Score = 86.6 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 53/543 (9%), Positives = 131/543 (24%), Gaps = 66/543 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144 W DA G + E S + G + G + + T+ Sbjct: 841 VWMTDAAGIVVEDSPSWREFTGQTYEEWKGTGWLNAIHPDDQQATIQAWQTAVSNIETFS 900 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + LW +G + + +P + R G+ + + + ++ Sbjct: 901 VEYRLWHQQGE--WRWMHARGVPQKLPDGSI--LRWIGMNTDITEQKEAQRVILESSRQL 956 Query: 205 S----------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + ++ E I+ + + Sbjct: 957 QLGVEIANLGLARVDYANNCITLTPEAAAIYGLGYQEILITRDEMLDLYHPEDRQDAADQ 1016 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + + S E + Sbjct: 1017 IQACIQECGDGRCDL--EHRLILPSGEIRWISARKQIYFDRSVEPAVPVYATLVAQDITI 1074 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYA----NPSFLLLTKYKSVDDIEIAGGLSTLL 370 E D +Y+ +L +L L + V+ A L Sbjct: 1075 SKREELNLAFLSDLQTQLIPLYNVDDLMEVATRETAKYLDLFRCLIVEFDANADYADILF 1134 Query: 371 DAPKLSDNN------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + S ++ + L ++ I+ + EN ++ + Sbjct: 1135 EHHDDSLHSIVGKHRVRDFHTESERQKLLAGEQFFISDTLYPEQDSRIAENFQSINVRAY 1194 Query: 419 E------------------------KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + ++ ++ + ++ L Sbjct: 1195 CNSAYITPQGIKFVISAVKREAYQWRPDELKLLQEITNRLCIRIERARAEAELADREAHL 1254 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ + +I R+G +L + K+ G ED++ K F ++ + Sbjct: 1255 RRVINNQLGLVGVIGRDGRLLEVDDDSMKIAGLTREDVIGKHFAECAWWTYDEAVSQKMR 1314 Query: 515 EILSLDLRQTLEKITL-----GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWK 565 E + + + + G E+ L + ++ + + + DISE Sbjct: 1315 ESMQKAFAGEVVRYDVPLFAAGLGGAERRLMIDFMMAPVFNKNGEVEYLIPSGVDISERV 1374 Query: 566 QEK 568 + Sbjct: 1375 AVE 1377 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 55/468 (11%), Positives = 141/468 (30%), Gaps = 38/468 (8%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + R ++ D+ + ++ E E + ++ + S Sbjct: 577 IKTRRKVQQQHLTIRKGDQIQEVMITVQPMPRLGEDEGLFMVVFHDVGLPVKKEVNEESP 636 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 E H D ++ +Y L S + +D + + + ++ + + E L Sbjct: 637 RETVPHADAIIAQLEYELQCSRDELEKTLQDMDVAHEELKSTNEELLSMNEELQSANEEL 696 Query: 304 SHRNHPSLSAY--FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDI 360 + + + I F+ + P+ + D Sbjct: 697 ETSKEEITAVSNSVARTNSDLENLLRSTQIATVFLDDELLIRSFTPAITEIYSLIHTDIG 756 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L++ + R + HT+ + +P++ Sbjct: 757 RPLERFVPLVEEMPPLPDP--------RKLQQSHPIE---HTVVADSGKVYIRRVLPYQS 805 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + E + I+ ++ +++A+S + + + GI++ + + Sbjct: 806 YSGQNEGIVVTFIDV---------SELHNSQELFQLLIDASSQIVWMTDAAGIVVEDSPS 856 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + G E+ + + + +S ++E E + + Sbjct: 857 WREFTGQTYEEWKGTGWLNAIHPDDQQATIQAWQTAVSNIETFSVEYRLWHQQGEWRWMH 916 Query: 541 LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 R + +KLP S + DI+E K+ + + + + + + LARV + Sbjct: 917 ARGVPQKLPDGSILRWIGMNTDITEQKEAQRVILESSRQLQLGVEIANLGLARV--DYAN 974 Query: 599 P---LT----AI--IGFSEVI--KNQRFGPLGNPRYIEYANYIDRSGN 635 LT AI +G+ E++ +++ + A+ I Sbjct: 975 NCITLTPEAAAIYGLGYQEILITRDEMLDLYHPEDRQDAADQIQACIQ 1022 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 54/404 (13%), Positives = 120/404 (29%), Gaps = 21/404 (5%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + A+ + + S L + + D +S P + + Sbjct: 698 TSKEEITAVSNSVARTNSDLENLLRSTQIATVFLDDELLIRSFTPAITEIYSLIHTDIGR 757 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + V E+ P L HT+ + + Q+ S ++ + Sbjct: 758 PLERFVPLVEEMPPLPDPRKLQQSHPIEHTVVADSGKVYIRRVLPYQSYSGQNEGIVVTF 817 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365 S E L +D ++ G + +PS+ T ++ + G Sbjct: 818 IDVSELHNSQE---LFQLLIDASSQIVWMTDAAGIVVEDSPSWREFTGQT-YEEWKGTGW 873 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L+ + + I+ S+ + RL Q M + Sbjct: 874 LNAIHPDDQ---QATIQAWQTAVSNIETFSVEYRLWHQQ---GEWRWMHARGVPQKLPDG 927 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + G+ + + + +R + QL +E + G+A ++ ++ + ++ Sbjct: 928 SILRWIGMNTDITEQKEAQRVILESSRQLQLGVEIANLGLARVDYANNCITLTPEAAAIY 987 Query: 486 GYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSL 541 G ++IL + + + D R LE + + E + +S Sbjct: 988 GLGYQEILITRDEMLDLYHPEDRQDAADQIQACIQECGDGRCDLEHRLILPSGEIRWISA 1047 Query: 542 RIIIKKLPFSSCYS-----LTMHDISEWKQEKNKLSHAKKIAEK 580 R I L DI+ K+E+ L+ + + Sbjct: 1048 RKQIYFDRSVEPAVPVYATLVAQDITISKREELNLAFLSDLQTQ 1091 >gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae AM-19226] Length = 1331 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.092, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella oneidensis MR-1] Length = 1188 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 129/593 (21%), Positives = 216/593 (36%), Gaps = 44/593 (7%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P R+ + + ++ + + P E + + + Sbjct: 333 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 386 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350 L E L Y L +D P F GN N + Sbjct: 387 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 441 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + I G S L +P++ + + DRT + R Sbjct: 442 MLGYTESEMI---GLSSEDLTSPEMGIRIRAEDAQIL-KDRTPL----RYQEKVELAGKP 493 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468 + + + N+ E + + + ++ + + ++A DG+ + Sbjct: 494 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 553 Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTL 525 + E II N + + GY + L + + Y + L + + Sbjct: 554 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEI 611 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E LG + R + + T DI+ K + L AK+ AE + Sbjct: 612 EFRILGKNSSYHWVLSRGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELAN 671 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 +KS+FLA +SHEIRTP+ AIIG ++ + + +Y S +L I+N Sbjct: 672 LYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIIN 727 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 D+LD SKIE+GK+ L P LD+ + A+ L L A E+ + + IL D Sbjct: 728 DILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDP 787 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEK 755 + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + EK Sbjct: 788 LRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEK 844 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q S + GTGLGL ++K +V GK + S G+ Sbjct: 845 LFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 897 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%) Query: 9 NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61 +P L S+ +G +Q+ K +KI G+E + +EN + ++ Sbjct: 332 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 391 Query: 62 VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 T L + D G ++ + +G +M Sbjct: 392 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 450 Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG+ D++ I +LK + + +E V +D LP Y+R Sbjct: 451 IGLSSEDLTSPEMGIRIRAEDAQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 507 Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E G + R L ++ + ++ G + I S Sbjct: 508 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 565 Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285 L K + S + H DD ++ E+Y L + + + N + + Sbjct: 566 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNSSYHWV 625 Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ + + + + + + + Sbjct: 626 LSRGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 672 >gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 1587] Length = 1331 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.092, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 499 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 105/401 (26%), Positives = 177/401 (44%), Gaps = 9/401 (2%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 I ++ E + + K+ E L +L + D + + EG Sbjct: 77 VLIAAGLLKWVSTVASVEKLKAEVEKRKEMQEKLSRERSMLSGLLNSIPDAVFFKDPEGT 136 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 L N + P E ++ K F + S +N EI + + + Sbjct: 137 YLGCNPVFCEFVKRPTEGVVGKKNPDFYSKEVASFLNAEDKEIFETGKA--IIRERWATR 194 Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + L+ + L + DI+E ++ ++ L + + S KS+F+ Sbjct: 195 PDGRKVLLQTVKAPLYDETGNFIGLVGVSRDITERQRAEDALLKVRIAED-ASQAKSEFI 253 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE++TPL +IIGFS+++ G L R Y N I SG +L ++D+LD+SK Sbjct: 254 ATVSHELKTPLNSIIGFSDLLLEDSSGKLS-ERQARYINNISISGKHLLQFIDDILDLSK 312 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IE+GK L E + + + + + K++ + + I AD KQI Sbjct: 313 IEAGKTFLEPENFEFTKIFKDIEKVFRPRVSGKKLSLNFEVDSGIKSFYADKMMFKQILY 372 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FTP G I +S V + V+DTG+G++ +++ +PF Q + + Sbjct: 373 NLISNAVKFTPEEGSITVSAAKI-GNMVRICVKDTGIGISREDMDSFFQPFKQPDSFFKR 431 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R E TGLGL L K V+ + G S P +G+ I PL Sbjct: 432 RYERTGLGLFLVKRFVEMHGGNIQAESVPGEGSSFIIELPL 472 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 15/180 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148 D G + + + ++G + D + + L ++ +T Sbjct: 132 DPEGTYLGCNPVFCEFVKRPTEGVVGKKNPDF-------YSKEVASFLNAEDKEIFETGK 184 Query: 149 -----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 W V + P+Y F G G+ ++ Sbjct: 185 AIIRERWATRPDGRKVLLQTVKAPLYDETGNFIGL--VGVSRDITERQRAEDALLKVRIA 242 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + ++V E + L +++ L+E A + + LL Sbjct: 243 EDASQAKSEFIATVSHELKTPLNSIIGFSDLLLEDSSGKLSERQARYINNISISGKHLLQ 302 >gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM 4136] Length = 1205 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 151/810 (18%), Positives = 266/810 (32%), Gaps = 101/810 (12%) Query: 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL 136 W D G + SEEL + A + G + D+ L Sbjct: 15 TAQLFPQYLAW--DRSGGIAAASEELQTLL---AEEGAGKVVSDLFIAEDEMFPKACAPL 69 Query: 137 -LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 L + + E V +AA V R P+A Sbjct: 70 RLVHRESGRRLDGYCVPEPDASLVWFLVAA-------------------RVGRSTVYPQA 110 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDV 253 F + + + I + ++V L+ + Sbjct: 111 ----STNLFDVVADRTINGVVMTDRAGRILWINHRFEKITGWTLDEVRGLSPGSFLQGPE 166 Query: 254 LKTEKYPLLTSEES---SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 L+ + Q + N +Y L++ S E +L+ N S Sbjct: 167 TDPATVDLMREKIRTGQPFTTQVLNYRRNGERYWLHLDVQPLRDPSGEVTSFLAIENDIS 226 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH--------GNLFYANPSFLLLTKYKSVDDIEI 362 S ++ + E + G + + + K+ + + Sbjct: 227 QSRRHEQRIAVQLEVSKILAEAISIEQAIPLLLETVGKSLEWHAGAVWMKDTKADELMLR 286 Query: 363 AGGLS-----TLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------SARLHTIQWNREN 409 A + + S ML R T + + Sbjct: 287 AFWKNAAVEMRPFEQVCRSLKVVKGQGMLGRVWETGVCVWEEDLAGNEQCPRSQALQASG 346 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVD-------------------TRINKRKMEIE 450 P K +F E D + + + + Sbjct: 347 LHGALCFPVVKDTEFLGAFEFISTSVEFSDTEMLGILKSIGSQVGQFVVRKRAEAALLVA 406 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +IL+ T I + +G+I + N L GY +++ + VM Sbjct: 407 NRLNQAILDGTRYSIISTDLDGVIQTFNSGAESLLGYRAAEMVGIKTPEVIHDAREVVMR 466 Query: 511 HYLTE--------------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 + +R E K+ L + + + L + Sbjct: 467 AAALTAELGVPVPAGFETFVAKARIRVPDEGEWTYIRKDGTRLPVLLSVTGLTNAEGALT 526 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI+E ++ +N+L AK+ AE + K +FLA +SHEIRTP+ IIG S ++ Sbjct: 527 GFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTPMNGIIGMSGLLLE 586 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + + + I SG ++DI+ D+LD SKIE+ +++L E SLD + + Sbjct: 587 TKLES----SQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEETFSLDAVIDGVV 642 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIIS 728 L+ K + + ++P + D ++QI N++ NA FT G I ++ Sbjct: 643 DLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFTDEGEVNLFISVA 702 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N + V DTG+GMT ++E+ +PF Q+ +S R GTGLGL ++K +V+ Sbjct: 703 RGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGLGLVISKRLVEMM 762 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G ++ STP KG+ P S P + Sbjct: 763 GGAIHVESTPGKGSRFFFRLP-ARHSAPEE 791 >gi|75909252|ref|YP_323548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702977|gb|ABA22653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 1122 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 98/771 (12%), Positives = 240/771 (31%), Gaps = 67/771 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK 146 +D G L ++ K G ++IG + + I LK + Sbjct: 240 RVDNLGRLTFVNSVACKIFGKPMDELIGQLIFEWMFPEDEIPQAKEYFQALKSP-PYQIS 298 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P+ + + I + E F+G G ++ + + + Sbjct: 299 ISEQPVLTPSGIRWFQWNIIGIENTIGEVVEFQGVG--RDITERRQAEESLRQSEARLNL 356 Query: 207 LHEIKKGHSS---------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 E + + + +D ++ Sbjct: 357 ALEAANMGIWDWYLLTNETIWSANMGLLYGLPSTTLCPSPE---DFLQLVHPEDREKFSQ 413 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + + + + + S + Sbjct: 414 SAKNSIEQGIPFTIEYRTVWNDGSIHWLNSKGQVYYDKAGKPIRMIGTTRDISERKQAEA 473 Query: 318 GENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E +++ G + N S + +E L Sbjct: 474 SLRESEELYRSVVTAMSEGIVLLHTDGQIIACNASAERILGLSREQILERTCVDERWLTI 533 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + RT S + + ++ + Sbjct: 534 HEDGSPFPREQHPAMETLRTGKPCSNVVMGVHKPDGQISWISINSQPLCRENETVPYAVV 593 Query: 433 IE-PEDVDTRIN---KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + +++ E ++ + ++LE +D I + + + IL N+ +L+G+ Sbjct: 594 TSFADISEQQAALRSRQQAEQKIREQAALLEIATDAIFVRDLQSNILFWNQGAERLYGWS 653 Query: 489 VEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++ + + L + + L ++ L + TK K + + Sbjct: 654 QQEAIGRNTQELLYSETSFHLHEAALNVVMELG---LWQGELQKLTKSGKEVIVESRWTL 710 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + ++ + DI++ KQ + + A+++ ++H++ LT I Sbjct: 711 MRDAAGQPKSILVVDTDITQKKQLEEQFFRAQRL-----ESLGTLAGGIAHDLNNILTPI 765 Query: 604 IGFSEVIK------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 + S+++K R +G+ + ++ + +V +L ++ G+ + Sbjct: 766 LAASQLLKVKFPDEQGRTPMVGSTSFQHLLEIVESNARRGAGLVKQVLSFARGFKGERTI 825 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 V L +++ I L+ K I +SF + + D+ + Q+ +N++ NA Sbjct: 826 ----VQLKHLITDII-LIGKQTFPKSIEFISSFPEALWSVCGDVTQLHQVLMNLVVNARD 880 Query: 718 FTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 P+GG+I ++ + L V DTG+GM L + +PF Sbjct: 881 AMPNGGKINVTAENIFIDETYASMILEAQVGNYIQLTVTDTGIGMPPEILNRIFEPFFTT 940 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G GTGLGL ++ ++ G + S +G+ ++ P + Sbjct: 941 K----EVGAGTGLGLSTVLGIIKSHGGFVKVSSKVGQGSQFKLFLPAIPAT 987 Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats. Identities = 47/437 (10%), Positives = 124/437 (28%), Gaps = 34/437 (7%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-- 231 EF G R ++ ++ + L E++ + S Sbjct: 198 EFLGLRKVCQ-RGIVEVQRAEQALQQSEELYRQLVELQNEVILRVDNLGRLTFVNSVACK 256 Query: 232 -PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQY 288 M + L + +D + K + + E + Sbjct: 257 IFGKPMDELIGQLIFEWMFPEDEIPQAKEYFQALKSPPYQISISEQPVLTPSGIRWFQWN 316 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSHGNLFYA 344 ++N E E+ + +E + ++ + + Sbjct: 317 IIGIENTIGEVVEFQGVGRDITERRQAEESLRQSEARLNLALEAANMGIW----DWYLLT 372 Query: 345 NPSFLL-----LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 N + L S ++ S I + Sbjct: 373 NETIWSANMGLLYGLPSTTLCPSPED----FLQLVHPEDREKFSQSAKNSIEQGIPFTIE 428 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 T+ WN + + ++ + + G + + + + + S++ Sbjct: 429 YRTV-WNDGSIHWLNSKGQVYYDKAGKPIRMIGTTRDISERKQAEASLRESEELYRSVVT 487 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTE 515 A S+GI +++ +G I++ N + ++ G E IL + + + ++ Sbjct: 488 AMSEGIVLLHTDGQIIACNASAERILGLSREQILERTCVDERWLTIHEDGSPFPREQHPA 547 Query: 516 ILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKN 569 + +L + + +G K + ++ + I + L + + DISE + Sbjct: 548 METLRTGKPCSNVVMGVHKPDGQISWISINSQPLCRENETVPYAVVTSFADISEQQAALR 607 Query: 570 KLSHAKKIAEKESSHKS 586 A++ ++++ Sbjct: 608 SRQQAEQKIREQAALLE 624 >gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1235 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 116/569 (20%), Positives = 203/569 (35%), Gaps = 37/569 (6%) Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFD 316 P E+ S + F ++ QY L ++ + ++ R + + Sbjct: 395 EPRKPPEQISQGWEPWFQLVSRIFEENLQYTKHLAEQNRRLDKLVARRTARLKETTERRE 454 Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 L +D P F G N + + Y + I L + Sbjct: 455 REYALLRSLLDSIPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQESI--KLTTQEQS 512 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 A +L + + + N+ E + + Sbjct: 513 VRIKAEDERVLAERTPLRYQEKVEFA------GKPVLLDTLKLPFYNRRGELLGLIAVWR 566 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED-- 491 + + ++ + + ++A DG+ ++ + II N A + GY + Sbjct: 567 DVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQII--CNPAYYSMLGYKSNEFP 624 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIK 546 L + + + Y + L D + K + L + Sbjct: 625 ALVSTLDDLIHPDDRIRVQEYREQYL-GDPIGAFDVEFRMRGKSGQYHWLLSRGRVVEYT 683 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 T DI+ K + L AK+ AE + KS+FLA +SHEIRTP+ AIIG Sbjct: 684 VDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIGM 743 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++ + + +Y + S +L I+ND+LD SKIE+GK+ L LD+ Sbjct: 744 LQLAQRTELTA----KQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDK 799 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725 + A+ L L + +K + + IL D + Q+ +N+LSNA+ FT +G Sbjct: 800 VLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTG--- 856 Query: 726 IISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 I E + VRDTG+G++ + F Q S + GTGLGL Sbjct: 857 EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLS 916 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K +V G+ + S G+ Sbjct: 917 ISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945 Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 73/605 (12%), Positives = 168/605 (27%), Gaps = 44/605 (7%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137 + D G ++ + +G ++IG ++ + +L Sbjct: 465 DSIPEAIVFK-DKEGKYLGCNKAAERMLGYTESELIGQESIKLTTQEQSVRIKAEDERVL 523 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196 + + +E V +D LP Y+R E G + R L Sbjct: 524 AERTPLRYQE---KVEFAGKPVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 578 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252 ++ + ++ G + I + L K+ + S + H DD Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDD 638 Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 ++ ++Y L + + + + + E + Sbjct: 639 RIRVQEYREQYLGDPIGAFDVEFRMRGKSGQYHWL-----LSRGRVVEYTVDNQPKRMVG 693 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 ++ ++ + F AN S + T ++ + + L Sbjct: 694 THKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIGMLQLAQRTELT 753 Query: 371 D-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D L R + S + + + + + Sbjct: 754 AKQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHALDLNALKSQ 813 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 Q G+E +E + ++L +L + G I + G Sbjct: 814 QKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIEL----GCEDVGERD 869 Query: 490 EDILRKPFTVF----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 I K + + + + + + + LG + + L+S+ Sbjct: 870 HRITLKFWVRDTGIGISKEQQASLFDAFAQA-DGSTTRKYGGTGLGLSISKHLVSMMGGQ 928 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++ T ++ + + E+ S K+ + P TA+ Sbjct: 929 MQVQSEMGVGSTFSFTISFEIAEEAEVKPMIVPERLGSLKTLVVDD------NP-TALQI 981 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++ V+++ F E +++S +L LLD E + + E LD Sbjct: 982 YATVMRDFHFEVDTAANGSEALYKLEKSSVDLL-----LLDWMMPEMDGIQVIEE---LD 1033 Query: 666 EAVSE 670 V++ Sbjct: 1034 RMVAD 1038 >gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae 2740-80] gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae NCTC 8457] gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae M66-2] gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286] gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MAK 757] Length = 1331 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHHVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 44.2 bits (103), Expect = 0.087, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHHVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.47, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 57/228 (25%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + + Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHHVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658 >gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1229 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 107/483 (22%), Positives = 197/483 (40%), Gaps = 29/483 (6%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + A PS + + L + + + +A Sbjct: 258 RVINATPS-GQVLGPDGLYTFATIVLTPDRLPGSDVHRGEVPEQYRQTWKVVSLTP-NAV 315 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L ++W + A + + + ++ + + + + + ++E Sbjct: 316 LAQVRWRQWPLYASASALVLLLAVIGAYLHASRM----LERQDAAQALAVSEARFRGLVE 371 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 + D I + +G++ + ++LFG P ++ K F+ + Sbjct: 372 TSPDLIWETDMDGVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAP----------E 421 Query: 520 DLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576 D +T E G+ K L + + ++ P DI+E K + L A++ Sbjct: 422 DTPETWEATLPGAGEGGGKALEVSCVPRRTPEGEALGRRGVARDITERKNAQCLLDAARQ 481 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 A + + KS+FLAR+SHEIRTPL A+IG S + P R +Y I S + Sbjct: 482 EAVRANQAKSEFLARMSHEIRTPLNAVIGMSHLALKTELTP----RQEDYLTKIRSSADT 537 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L ++ND+LD SKIE+G+ + P LD + + ++ A EK++ S +++P Sbjct: 538 LLAVINDILDYSKIEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPS 597 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYE 752 ++ D + Q+ LN++ NA+ FT SG ++ + + VRDTG+GMT + Sbjct: 598 WLVGDPLRLGQVLLNLVGNAVKFTDSGEVLVEVRLEKAVADAARLRFAVRDTGIGMTPEQ 657 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 +PF Q S R GTGLGL + +V+ G + S +G+ + P+ Sbjct: 658 KHNLFRPFAQADGSISRRYGGTGLGLSICHRLVELMGGNLAVESVSGQGSEFYFSLTLPV 717 Query: 811 YDT 813 Sbjct: 718 SQE 720 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 67/264 (25%), Gaps = 18/264 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W D G + S + G ++G ++ P + TW Sbjct: 376 LIWETDMDGVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAPED-------TPETW- 427 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 P G ++++ +P + E G RG + + + L ++ Sbjct: 428 --EATLPGAGEGGGKALEVSCVPRRTPEGEALGRRG--VARDITERKNAQCLLDAARQEA 483 Query: 205 SHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 ++ K + + + + + D L Sbjct: 484 VRANQAKSEFLARMSHEIRTPLNAVIGMSHLALKTELTPRQEDYLTKIRSSADTLLAVIN 543 Query: 260 PLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +L S+ + + +L+ +++ E+L S + Sbjct: 544 DILDYSKIEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPSWLVGDP 603 Query: 319 ENLTPETVDKCPIPFFVYSHGNLF 342 L ++ G + Sbjct: 604 LRLGQVLLNLVGNAVKFTDSGEVL 627 >gi|167621587|ref|YP_001672095.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167351710|gb|ABZ74436.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 1069 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 120/717 (16%), Positives = 246/717 (34%), Gaps = 28/717 (3%) Query: 116 MRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 + + + + + ++ + + +G + + + E Sbjct: 215 RNSLALYHPDDRAKLTACVREAVAAKGSFEAQLRINRPDGEIR--DVISRGVCELDEHGE 272 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPP 231 + FG+ KR ++++ L + + + Sbjct: 273 ATAV--FGVFQDITDQTRILNAIKRSERRYKLLADNMSDVVTRIRLDGGSGYISPTIERL 330 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 R + + + H+DD + + Q + + F Sbjct: 331 LGYRPEEMTGRSAQDFVHQDDRSQILAIFGQMAQGLEQKTLQHRAIHKDGRTVWVETSFR 390 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHG--NLFYA 344 +++ + E ++ + + + E + + G L A Sbjct: 391 LVRDEQDQPLEIVAVIRDATDRKALEDATIAARDEAREQAQRAATAERMAGLGHWRLEVA 450 Query: 345 NPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 S Y+ L A D+ A L+R+ T + + Sbjct: 451 TRSVTWSEQMYQIYGLDPALPLDLDALLAMTHPDDQAESSQRLHRALTTGQPTMEAVFRL 510 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 +T + + + + G + + + + + + + E SD Sbjct: 511 IRADGQLRDITGNMLVQKDADGQVIAVVGTMSDVTEQQHAQAALAQSEARYRLLAENASD 570 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLR 522 I + +G + + ++ GY E ++ ++ + + + S Sbjct: 571 LIMHSDVKGQVTYVSPSILPTTGYAPEALVGTNILDWIAPEDVPGVQAAVAKQFKSRGAE 630 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKI 577 + K+ + L L + + DIS + + +L A+ Sbjct: 631 PPIAVEYRVRHKDGRELWLEARPTLAFDPETGAITGITDVVRDISARRVLEAELRAARAE 690 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE ++ KS+FLA +SHE+RTPLTA++GFS + ++ P + Y +G + Sbjct: 691 AEAAAAVKSEFLANMSHELRTPLTAVLGFS-RLAEEQ--PELSDTTRGYLKRACNAGQAL 747 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L VND+LD SK+E+G++ + P+S + +E + L A EK I + +PR Sbjct: 748 LLTVNDILDFSKLEAGQVEIAPRPMSPAKLATETLDLFATQAAEKGIALHLGGLETLPRT 807 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEK 755 + AD V+QI LN++ NA+ FT G + + + V DTG G+ ++ Sbjct: 808 VRADPDRVRQILLNLIGNAVKFTMVGS-VRVDAIFEPLGGFLSFAVTDTGPGVPEDRADQ 866 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + F Q+ S + GTGLGL + K + +A G S +G+ P + Sbjct: 867 LFQRFSQVDASSTRKHGGTGLGLAICKGLAEAMGGDIGAQSKVGEGSCFWFTIPAPE 923 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 34/375 (9%), Positives = 84/375 (22%), Gaps = 28/375 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGK 146 I G IS + + +G +M G D I + + + Sbjct: 313 RIRLDGGSGYISPTIERLLGYRPEEMTGRSAQDFVHQDDRSQILAIFGQMAQGLEQKTLQ 372 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G V ++ + + + ++ + Sbjct: 373 HRAIHKDGRT--VWVETSFRLVRDEQDQP--LEIVAVIRDATDRKALEDATIAARDEARE 428 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYYAHKDDVLK 255 + + + + H DD + Sbjct: 429 QAQRAATAERMAGLGHWRLEVATRSVTWSEQMYQIYGLDPALPLDLDALLAMTHPDDQAE 488 Query: 256 TEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-- 311 + + LT+ + ++ + ++ + + + + Sbjct: 489 SSQRLHRALTTGQPTMEAVFRLIRADGQLRDITGNMLVQKDADGQVIAVVGTMSDVTEQQ 548 Query: 312 --SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 A + E + G + Y +PS L T Y + + L Sbjct: 549 HAQAALAQSEARYRLLAENASDLIMHSDVKGQVTYVSPSILPTTGYAP-EALVGTNILDW 607 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN-QFPEN 427 + A+ R IA R ++ L + P + + Sbjct: 608 IAPEDVPGVQAAVAKQFKSRGAEPPIAVEYR---VRHKDGRELWLEARPTLAFDPETGAI 664 Query: 428 MPQNGIEPEDVDTRI 442 + + R+ Sbjct: 665 TGITDVVRDISARRV 679 >gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB] gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB] Length = 853 Score = 361 bits (927), Expect = 3e-97, Method: Composition-based stats. Identities = 125/607 (20%), Positives = 219/607 (36%), Gaps = 51/607 (8%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++V + P S L + NL + + Sbjct: 103 DQVYTHALRLPIDGQRTILLLAPGEPSGGLPLTQIFQPVLANLAKAIILCCNNDRLTRAL 162 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 + + A + D P +V +G NP F Sbjct: 163 AADRDDARAELAVALAQSERERAFLDSLYDAIPDLVWVKDMNGAYLSCNPMFSRFFNASE 222 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 D + +L+D K + I + I Sbjct: 223 YDIVGR---TDYDFIDKELADFFREKDRAAAEAGGPTINEEWLTF---GDSGYRGLFETI 276 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---------------------- 454 ++ + GI E + R + + +L Sbjct: 277 KTPMRDKEGYLIGILGISREITERRRVEDALRTSEAELDRHRQHLEALVAERTHALAQAN 336 Query: 455 ----CSIL--EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +I + GI ++ +G + NR + + GY V++++R T Sbjct: 337 VQLEQTIFAMDRVGIGIHWVDTQGYFIYVNRVAAAMLGYSVDEMMRLSVPDIHPDFTIEG 396 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 +I + ++ ++ + I I P ++ Y + DISE Sbjct: 397 FGAATEKIRQAGRVSLDAQ---HRHRDGHMVPVSINIYYRPETAQEPARYITFVSDISER 453 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK++AE+ + KS FLA +SHEIRTP+ AI+G + +++ N Sbjct: 454 KRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRRGLTDAALNEP-- 511 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I+ SG +L I++D+LD+SKIE+GK+ L P+ L + + E +++ A EK + Sbjct: 512 --LERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGRAQEKNL 569 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740 +R A +L D ++Q +N +NAI FT G I + + + V L Sbjct: 570 AVRVESAGWPLNVLGDATRLRQALINYANNAIKFTDHGA-ITLRSRVIEENDESILVRLE 628 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G++ L + PF Q +S + GTGLGL + + + G S+ K Sbjct: 629 VEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAESSLGK 688 Query: 801 GTLIEII 807 G+L I Sbjct: 689 GSLFWIT 695 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 43/423 (10%), Positives = 105/423 (24%), Gaps = 51/423 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D GY ++ +G +M+ + + D+ I+ + +++ Sbjct: 356 VDTQGYFIYVNRVAAAMLGYSVDEMMRLSVPDIHPDFTIEGFGAATEKIRQAGRVSLDAQ 415 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G + V I++ P ++ R V + + Sbjct: 416 HRHRDGHMVPVSINIYYRPETAQ----EPARYITFVSDISERKRAEQELREAKELAEQAT 471 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + K + + M+ ++ + ++ LL+ + Sbjct: 472 KAKSAFLANMSHEIRTPMNAILGSTYLMRRGLTD--AALNEPLERIEASGKHLLSIIDDI 529 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE--------- 319 L D I + ++ L E E L R A E Sbjct: 530 L----DLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGRAQEKNLAVRVESAGWPLNVLGD 585 Query: 320 --NLTPETVDKCPIPFFVYSHGNLFYANPSFLL-------LTKYKSVDDIEIAGGLSTLL 370 L ++ HG + + + + L L Sbjct: 586 ATRLRQALINYANNAIKFTDHGAITLRSRVIEENDESILVRLEVEDTGIGISPEALGRLF 645 Query: 371 DAPKLSDNNAIKP-----------------------VMLYRSDRTCIAASARLHTIQWNR 407 + +D++ + + +ARL Q Sbjct: 646 TPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAESSLGKGSLFWITARLKRHQVQA 705 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + D IN+ ++ V ++ ++ DG Sbjct: 706 SDKGMLVTGSSRDVEAALRQRYAGRLVLLVEDDPINREVAQMMVEEVGLAIDVAEDGCEA 765 Query: 468 INR 470 +++ Sbjct: 766 LDK 768 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 21/279 (7%), Positives = 62/279 (22%), Gaps = 39/279 (13%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142 W D +G + + + ++G D D D T Sbjct: 197 LVWVKDMNGAYLSCNPMFSRFFNASEYDIVGRTDYDFIDKELADFFREKDRAAAEAGGPT 256 Query: 143 WYGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + W G + + P+ + G G I + + Sbjct: 257 INEE---WLTFGDSGYRGLFETIKTPMRDKEGYLIGILG--ISREITERRRVEDALRTSE 311 Query: 202 KKFSHLHEIKKGHSSVEKEK------------------------------YDIFSQQSPP 231 + + + + + ++ + Sbjct: 312 AELDRHRQHLEALVAERTHALAQANVQLEQTIFAMDRVGIGIHWVDTQGYFIYVNRVAAA 371 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED-FHTINLNQYTKKQYFG 290 +++ L+ H D ++ ++ + + + Sbjct: 372 MLGYSVDEMMRLSVPDIHPDFTIEGFGAATEKIRQAGRVSLDAQHRHRDGHMVPVSINIY 431 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 ++E Y++ + S ++ E ++ Sbjct: 432 YRPETAQEPARYITFVSDISERKRAEQELREAKELAEQA 470 >gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73] Length = 769 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 124/506 (24%), Positives = 222/506 (43%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y + + ++ ++D + + +M + Sbjct: 281 VYWSRAMYEMLGYAPQNALLSISQITAIIDPKDANFFEIAQELM----SGAKKHIDINV- 335 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + M + P GI + + R + +++ +E Sbjct: 336 PMRHAEGYYVWMRIRAEVTDEEEP---HLVGISFDISEQRQFAEQTAQADLRIRDAIENI 392 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + G ++ +N + P + + +E + ++ Y ++ Sbjct: 393 SESFVLWDSAGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKVDEAG- 451 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 452 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 504 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKEKAESANKAKSEFLANMSHELRTPLNAILGF 564 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE++ FGPLG+ RY EY + I SG +L ++ND+LD+SKIE+G+ L + ++L+ Sbjct: 565 SEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNINLEP 624 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SE I + A K+I + T+ + D R++KQI LN++SNA+ FTPSGG I Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEPKL-HADVDCRAMKQIFLNLISNAVKFTPSGGSID 683 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I N +I ++DTGVG+ ++K KPF Q+ N G+GLGL +++++++ Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAISRSLLE 742 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S AKGT++ I P+ Sbjct: 743 LHKGKLEITSKEAKGTIVTITMPIQQ 768 >gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 774 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 102/444 (22%), Positives = 196/444 (44%), Gaps = 25/444 (5%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448 I + I W A+T + + + + + +E Sbjct: 39 GHLIDIATLWFPIYWISGIVKALTALVSCYTAMELVVLLPQFLALRESQKKEAAAQKALE 98 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 G+A+++ G L N++ +++ GY E++ F + Sbjct: 99 KSRQVFRDAFHDAPIGVALVSLVGKFLKVNKSTAQITGYSEEELCAVDFQSITHPDDLQE 158 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 + +++ R+ + K ++ +RI + L ++ + + D+SE Sbjct: 159 DLDLVDQLM-QGSRRLYQLEKRYFHKSGHIVYVRISVSLLRDANGDPQFFVAHIEDVSEQ 217 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + L A++ AE S KS FLA +SHEIRTP+ A++G +E++++ + Sbjct: 218 HRVNAALKAAQQEAEVASKSKSSFLAMMSHEIRTPMNALLGMAELLESTALTV----QQK 273 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ + I SG +L I+ND+LD SK+ESG + L + L E + + + L A+EK + Sbjct: 274 EFVSIIRSSGKTLLTIINDILDFSKVESGNLVLEEGYLDLYECIEDVLILFSNQADEKSL 333 Query: 685 LIRTSFAN-NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE------ 735 ++ + +P + D ++QI N++SN+I FT G I ++ + E Sbjct: 334 MLSSLVEPATMPTVFTGDPVRMRQILSNLISNSIKFTKKGEISIHVTISPIEAEALSEKR 393 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+DTG+G+ ++L+K KPF Q+ +S + GTGLGL + K +V+ G+ Sbjct: 394 SYYQLQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSICKRLVELMGGQM 453 Query: 793 YIFSTPAKGTLIEII--FPLYDTS 814 ++ S + P Y+ + Sbjct: 454 WVESELGCSSTFHFSIQLPAYENA 477 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 14/138 (10%), Positives = 43/138 (31%), Gaps = 6/138 (4%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLW 150 G ++++ + G ++ + ++ + + + D L + + + + Sbjct: 122 GKFLKVNKSTAQITGYSEEELCAVDFQSITHPDDLQEDLDLVDQLMQGSRRLYQLEKRYF 181 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G +YV I ++ L N + F + + A K ++ + Sbjct: 182 HKSGHIVYVRISVSLL--RDANGDPQFF--VAHIEDVSEQHRVNAALKAAQQEAEVASKS 237 Query: 211 KKGHSSVEKEKYDIFSQQ 228 K ++ + Sbjct: 238 KSSFLAMMSHEIRTPMNA 255 >gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase [Acaryochloris marina MBIC11017] gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase, putative [Acaryochloris marina MBIC11017] Length = 826 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 114/569 (20%), Positives = 204/569 (35%), Gaps = 71/569 (12%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360 P A N +D+ F Y + N + + Sbjct: 3 MPHQPADPFDIASPLSLANPFAAFIDQTVDIFVAYDQDLRIITINRIGAQRLQRPYEQIL 62 Query: 361 EIAG----GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 G L P L + + TI Sbjct: 63 GQTNQQLFGAQAELIDPFLMSALETGERVFAEQELVFNQQRYYYDTIY------------ 110 Query: 417 PFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIE----VMQLCSILEATSDGIAII 468 + GI + + + ++ + + + + A+I Sbjct: 111 -TPTTDARTGERQVWGICRDITIKKDLQKKREALLKQQTIQIEERFRTSFNNATIAKALI 169 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 +G L N A+S+L GY ++L+ + H + ++L + + Sbjct: 170 ALDGSWLQVNPALSQLLGYDPTELLKLRIEDLTHPEDQDIDRHQVRQLLI-GQTSSYQIE 228 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK--------- 575 + LS+ + + + S + M DI++ KQ + L Sbjct: 229 KRFLHRLGHTLSVLLSVALILNSQGKPSYFIAEMQDITQRKQAEAALYLQLQKTLQLQTA 288 Query: 576 ------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + A+ + KS+FLA +SHEIRTP+ A+IG ++++K+ +P Sbjct: 289 LQTKNQALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHL----DPHQ 344 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ I SG +L+I+ND+LD SKIESGK+ L P + V EA+ +V A K Sbjct: 345 QDFVETIRTSGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKG 404 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------- 733 + + P I D ++QI +N+L NA+ FT G ++I++ + Sbjct: 405 LELAYLIEPGTPNHIQGDANRLRQILVNLLGNAVKFTADG-EVIVTISARDVATAEMTPE 463 Query: 734 ----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E++ V+DTG+G+ +K + F Q+ +S GTGLGL ++K + + Sbjct: 464 VPLSLHELLFEVKDTGIGIAPEHQQKLFQSFCQLDSSITREYGGTGLGLAISKQLCELMG 523 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G ++ S G+ P D Sbjct: 524 GTIWVESQVGIGSSFFFTMAASALPGPED 552 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KTTL 149 G +++ L + +G +++ +R+ D++ D + H L T + Sbjct: 172 DGSWLQVNPALSQLLGYDPTELLKLRIEDLTHPEDQDIDRHQVRQLLIGQTSSYQIEKRF 231 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 G + + L+ I + + S F + A Sbjct: 232 LHRLGHT--LSVLLSVALILNSQGKPSYF--IAEMQDITQRKQAEAAL 275 >gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae RC385] Length = 1331 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 10/384 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNVKFLDLMGLYN 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y + I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 630 HLALNTPLDTT----QRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S KG+ E Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829 Score = 43.1 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 485 MYCLSADGKFLTVNVKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 12/180 (6%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 498 NVKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + ++ + GI + + + + ++ +A S Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKE----AADAMSQA 606 >gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1273 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 96/468 (20%), Positives = 182/468 (38%), Gaps = 21/468 (4%) Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + + + L + ++ + R+ + Q + ++ + Sbjct: 374 TAALALGVMRLFTPLRVSELAEQQGLNMSEHGTSTEMVDLLNDMRIQSEQGDFSQTVHVE 433 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 N + E R++ + SI E S+GI G + Sbjct: 434 EHTEVGQIAREYNRVLERVVQEMEWREEAVRQLRTAEEKFRSIFENASEGIFRTTANGRL 493 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGST 533 L N ++ ++ GY + L + + ++ + + Sbjct: 494 LEANPSLLEMLGYESVEDLLQSIPSLDRMYVKPQDRTRLIEDLRTNGKVKQFAASLY--R 551 Query: 534 KEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ +++ I + + S ++ D++E + + L K++AE + KS Sbjct: 552 KDGRIIDTSINARLIAPDSYDDVTQEIIEGSLIDVTERNEAEV-LRQQKEMAEAANKAKS 610 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FLA +SHEIRTPL +IG +++ + + Y + S +L ++ND+LD Sbjct: 611 SFLATMSHEIRTPLNGVIGMLDLLCETD----TDQQQGRYVSIAKNSAESLLCLINDILD 666 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705 SKIE+GK+ L +L V + + A K + + + R+L D ++ Sbjct: 667 FSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEVASRVLGDSERLR 726 Query: 706 QIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 QI +N++ NAI FT G +I I+ + V V+DTGVG+ ++ +PF Sbjct: 727 QILINLIGNAIKFTEVG-EIRINVAATSTRDHEQWVRFEVQDTGVGIPEDIQQRLFQPFE 785 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q S + GTGLGL + + + GK + S G + P Sbjct: 786 QADASTTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIP 833 Score = 38.5 bits (88), Expect = 5.5, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 2/84 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + A+G L E + L + +G + + + + + + D I DL Sbjct: 484 IFRTTANGRLLEANPSLLEMLGYESVEDLLQSIPSLDRMYVKPQDRTRLIEDLRTNGKVK 543 Query: 144 YGKTTLWPIEGTNLYVPIDLAALP 167 +L+ +G + I+ + Sbjct: 544 QFAASLYRKDGRIIDTSINARLIA 567 >gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7 genomosp. GTL1] gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7 genomosp. GTL1] Length = 571 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 100/422 (23%), Positives = 189/422 (44%), Gaps = 18/422 (4%) Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + ++ + N+ Q G+ + + + ++ + L Sbjct: 16 PYEIEIKIYKKDGSDA-WVFISNSPLFNEVGGIERQIGVMVDITERKKTVEELTM----L 70 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + T+ G+ I + EG + N A ++ GY + D+ K L+ V Sbjct: 71 SLVASKTTSGVVINDSEGKVEWVNSAFEQITGYSLNDVKNKHLGDSLKGELTDVSIIQKA 130 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 LS + +Q+ E L K+ + L + +I + ++ Y T+ DI+ K+ + + Sbjct: 131 RELS-EQKQSFEVDLLIYRKDGQPLWISVINSVIMGNNGRVDKYIETIIDITAKKKAELE 189 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L AK+ A + S K F+ +SHEIRTPL A+IG S ++ N E + + Sbjct: 190 LIAAKEEALQLSRAKDMFMGVMSHEIRTPLNAVIGMSHILLNDN----PLESQKENLSIL 245 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + S ++ ++ND+LD +KIE+G + L + + + + I ++ ANEK I + S Sbjct: 246 NFSAENLMTLINDVLDFTKIETGNVELEIARLDIRDMIQSIIGSMKYKANEKGIYLTKSI 305 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGV 746 +P ++ D + QI LN++SN++ FT GG I + + + V +R V DTG+ Sbjct: 306 DEAVPDIVMGDRARLVQILLNLVSNSVKFTSEGGVNIDLKVIEQTKDTVRIRFGVSDTGI 365 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + F Q GTGLGL ++K ++ + + + S +G+ Sbjct: 366 GIAENKLNTIFESFKQAEADTTRHYGGTGLGLAISKRLIQLHDSRINVDSVLGQGSTFWF 425 Query: 807 IF 808 Sbjct: 426 TI 427 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 7/71 (9%) Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 V + + + E K+ + I L M DI+ Sbjct: 2 EVFREAVQAVKEN---KPYEIEIKIYKKDGSDAWVFISNSPLFNEVGGIERQIGVMVDIT 58 Query: 563 EWKQEKNKLSH 573 E K+ +L+ Sbjct: 59 ERKKTVEELTM 69 >gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 1009 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 115/653 (17%), Positives = 237/653 (36%), Gaps = 29/653 (4%) Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 G + L + +G V ++ + + Sbjct: 103 AGARVGTGPPAAAAAASGPESRVDAARTAALLGKTLDCMDQGVILVGPDRTVQVANRRAR 162 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 L + + Y + + + ++ L ED ++ GT Sbjct: 163 EWLGLSEAFIASRPSYREVRALARRSPHWGSLVADTPLQLSEDDPAATHTVAERRNAEGT 222 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFL 349 + E + E+ + + G Y +PS Sbjct: 223 VLEIRTVRTEDGGLIQTLTDITERRSAEDRYRLLAENATDLISLQSIRGGTKTYVSPSAR 282 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + ++ + + L A +L ++ + S + ++ + Sbjct: 283 AVVGWEPEE-------FAQLTLAQQLHPDDLARVKREAASLTPDAPRRTSEYRLRHKSGH 335 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + P+ + R + + + E T D IA + Sbjct: 336 YVWVESTLLLTKPGTPDEALIIA-SRDVTARRAADDALRESEARHRLLAERTGDVIARAD 394 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G + + +V + GY + +L + + + H +++ + Sbjct: 395 LDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHRYAALVAAGPGARAKFEY 454 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHA-------KKI 577 + + L + L + + D++ K +L+ A + Sbjct: 455 RVRHRHGHDVWLEVNPTVLYDEATGVPLGFVDVARDVTARKAVDAELAAAREQAEAARVH 514 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S K+DFLA +SHEIRTPL+++IG++E++ + P A+ I +G+ + Sbjct: 515 AELASQAKTDFLASMSHEIRTPLSSVIGYTELLLDD---PDLTEGQRLQASRIRSAGSAL 571 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L +V+D+LD SKIE+G+++L P +L + A+++V+ A K + IR +P+ Sbjct: 572 LTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPALPQT 631 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEE-VILRVRDTGVGMTNYEL 753 ++ D ++QI LN L+NA+ FT G + + + T + + V DTG+G+ + Sbjct: 632 LVGDQNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIAPEQQ 691 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + K F Q+ S + GTGLGL ++K +++ G + S P +G+ Sbjct: 692 ARLFKRFTQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVVSAPGEGSTFWF 744 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 69/284 (24%), Gaps = 7/284 (2%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G L+ +S + G A ++G H L Sbjct: 392 RADLDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHRYAALVAAGPGARAK 451 Query: 148 TLWPIEGTNLY-VPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDND-PRALGKRLDKKF 204 + + + + V +++ +Y GF + L ++ Sbjct: 452 FEYRVRHRHGHDVWLEVNPTVLYDEATGVPLGF--VDVARDVTARKAVDAELAAAREQAE 509 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + + P + L + + L+ + ++ Sbjct: 510 AARVHAELASQAKTDFLASMSHEIRTPLSSVIGYTELLLDDPDLTEGQRLQASRIR--SA 567 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + L +D + + + ++ + + ++ P Sbjct: 568 GSALLTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPA 627 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 L + N + + + V + AG Sbjct: 628 LPQTLVGDQNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDR 671 Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 33/400 (8%), Positives = 86/400 (21%), Gaps = 24/400 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWP 151 G +S +G + + L + L + L Sbjct: 272 GTKTYVSPSARAVVGWEPEEFAQLTLAQQLHPDDLARVKREAASLTPDAPRRTSEYRLRH 331 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G ++V L + + + + + L E Sbjct: 332 KSGHYVWVESTLLLTKPGTPDEALIIAS-----RDVTARRAADDALRESEARHRLLAERT 386 Query: 212 KGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---LTSE 265 + + P + + H D Sbjct: 387 GDVIARADLDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHRYAALVAAGP 446 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + L + + ++ + D E Sbjct: 447 GARAKFEYRVRHRHGHDVWLEVNPTVLYDEATGVPLGFVDVARDVTARKAVDAELAAARE 506 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + + + S + ++ + G LLD P L++ ++ Sbjct: 507 QAEAARVHAELASQAKTDF----LASMSHEIRTPLSSVIGYTELLLDDPDLTEGQRLQAS 562 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + + + + +PF + E I Sbjct: 563 RIRSAGSALLTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRV 622 Query: 445 -------RKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + +L IL + R G ++ Sbjct: 623 DIDPALPQTLVGDQNRLRQILLNFLNNALKFTRRGRVVLA 662 >gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Alteromonadales bacterium TW-7] Length = 889 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 136/670 (20%), Positives = 246/670 (36%), Gaps = 25/670 (3%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + +EF G G G + + + K ++ L K + + Sbjct: 92 SYSNARDYAQEFPGANGVGYIKKVTHNELAEFINKAQSERPDSLFNFKTLTENKNDH-FV 150 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 I + + L++ + + + H L Sbjct: 151 IQYIFPESGNKQAIGLDIGSETIRKRAALSAVFADNAQLSAPITLVQADQKAHHGFLILL 210 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + T +N + P L E Y Sbjct: 211 PIYKSKITPTSNDERLEALHGWAYSPLLIDNILNSLFDIDENYLTISDLNDATDVAFFTY 270 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 NP+ K +V + TL + +N + + + A L + Sbjct: 271 GNPANNTEFKVSTVTKVIGREWQITLHGSYAFLENLHLPYQYQALVNGIFLTLIAMLVVL 330 Query: 404 QWNRENSL-AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + A +A Q +N+ + + D ++ +++ M SIL++ S Sbjct: 331 AIQLQFFRKAQKENLRREAEQAHKNILEQANLKLETDVKLRTQQIADISMLQRSILDSAS 390 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----YLTEIL 517 I + G+I N A KL GY D++ K T L +I+ Sbjct: 391 YSIIATDINGLITEFNPAAEKLLGYKAFDVVGKKTCSIFHVETELTSKAKQLSIELNKIV 450 Query: 518 SLDLRQTLEK---------ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 S + K + + + + + + L + + D+++ Sbjct: 451 SPGFETLIVKTTPTEPDVNQWTYVDSKGRHIQVSLSVTSLLNNRAQVVGFLGIAFDLTQQ 510 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + + L+HAK++AE+ S KS+FLA +SHEIRTP+ I+G ++++ Q N + Sbjct: 511 IKHEQALAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQPM----NDKST 566 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y S + I+ND+LD SKIE+GK++L + LDE + S + + A EK I Sbjct: 567 DYLKKALYSTRSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNI 626 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ + D ++Q+ LNI+ NAI FT GG + + T +E+V V DT Sbjct: 627 YLKFKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGG-VTVEFKLTDDEQVCAIVSDT 685 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + F Q +S GTGLGLP+ K++++ G + S G+ Sbjct: 686 GIGIPKNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQF 745 Query: 805 EIIFPLYDTS 814 + PL Sbjct: 746 YVYLPLEQAD 755 >gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 1000 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 102/607 (16%), Positives = 203/607 (33%), Gaps = 32/607 (5%) Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + PP ++ +S E+ + + + ++ HT Sbjct: 80 YGSAEEPPGRQVSELWASPAEFLQAERECREKGEWIGELQARRRDGTFFYVHTSLSLIRN 139 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLS-AYFDEGENLTPETVDKCPIPFFVYS-HGNLF 342 ++ + + + E + ++ + + + N Sbjct: 140 REGLPLGISGSFVDITRLKQVEEELRNRTLELSEAKARLDLALEATEMGTWDWDVLTNGM 199 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLH 401 + + L + ++ L L + ++ + VM +D + H Sbjct: 200 TWDDNLFRLVGISREEFLQTHDSLLELSNRILSPEDNRRMLEVMQAVADGKTDSYEFE-H 258 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + + G + D +I + + L Sbjct: 259 DVLRPDGTVRHFLVKGRAHRDSEGKLLRVTGTTTDITDQKIAEDALRRSEANLARSQAMA 318 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 G + + + + ++ Y + + + + L Sbjct: 319 HLGSYSFDAHTGEIYWSEELKTIWDYDPGPNYSFETVISRIHPEDRKRILEALKNA--GQ 376 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576 + + + + + + T+ DI+ K + +L AK+ Sbjct: 377 GKHPFNSEYGILKPDGSIRYVHDQGEISLDGNGVPVRMFGTLQDITHRKLMEEQLLKAKE 436 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE + K DFLA +SHEIRTP+ A++G E++ EY S Sbjct: 437 AAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSL----TDEQREYLQLAHASAES 492 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L I++D+LD SKIE K+ L L+ +S I+L+ A K + + ++P Sbjct: 493 LLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIEKDLPS 552 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------------TSNEEVILR 740 + D +KQ+ NIL NAI FT G +I +S ++ + Sbjct: 553 TFIGDPVRLKQVLFNILGNAIKFTKKG-EIALSVEVYMPSERNSGLSNSDFPEEVALLFK 611 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+DTG+G+ +L + PF Q S GTGLGL ++ +V+ G+ ++ S K Sbjct: 612 VKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISSQLVELMEGRIWVESEVGK 671 Query: 801 GTLIEII 807 G Sbjct: 672 GCTFYFT 678 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 36/406 (8%), Positives = 99/406 (24%), Gaps = 50/406 (12%) Query: 83 VRFTWNIDA----------HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNN 131 VR W D+ G L ++ + G A + G ++ ++ P Sbjct: 45 VRLEWQADSAVTGLITMDFDGTLSYVNPFFVRMWGYGSAEEPPGRQVSELWAS----PAE 100 Query: 132 HIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + + + W G+ +GT YV L+ I +R G G V + R+ Sbjct: 101 FLQAERECREKGEWIGELQARRRDGTFFYVHTSLSL--IRNREGLPLGISG-SFVDITRL 157 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVE----------------KEKYDIFSQQSPPPH 233 L R + + + E + + Sbjct: 158 KQVEEELRNRTLELSEAKARLDLALEATEMGTWDWDVLTNGMTWDDNLFRLVGISREEFL 217 Query: 234 LRMKNKV-SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + + S + + + + S + D + Sbjct: 218 QTHDSLLELSNRILSPEDNRRMLEVMQAVADGKTDSYEFEHDVLRPDGTVRHFLVKGRAH 277 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF------FVYSHGNLFYANP 346 +++ + + ++ + + + F G + Y + Sbjct: 278 RDSEGKLLRVTGTTTDITDQKIAEDALRRSEANLARSQAMAHLGSYSFDAHTGEI-YWSE 336 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + Y + +S + + + + ++ + I Sbjct: 337 ELKTIWDYDPGPNYSFETVISRI------HPEDRKRILEALKNAGQGKHPFNSEYGILKP 390 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + + + G + ++ + ++ Sbjct: 391 DGSIRYVHDQGEISLDGNGVPVRMFGTLQDITHRKLMEEQLLKAKE 436 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 53/174 (30%), Gaps = 11/174 (6%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + E + + K +E ++++L ++ G+ ++ +G + N Sbjct: 14 EGESIEEIRGKKRADREETEVQEKSHLEEKLVRLEWQADSAVTGLITMDFDGTLSYVNPF 73 Query: 481 VSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++GY E+ + + +L + ++ Sbjct: 74 FVRMWGYGSAEEPPGRQVSELWASP-----AEFLQAERECREKGEWIGELQARRRDGTFF 128 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + S + DI+ KQ + +L + + + D Sbjct: 129 YVHTSLSLIRNREGLPLGISGSFVDITRLKQVEEELRNRTLELSEA-KARLDLA 181 >gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 866 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 116/611 (18%), Positives = 216/611 (35%), Gaps = 34/611 (5%) Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 S H V + P + L Sbjct: 2 GAGATPASVYEQAFHHCRDGLVLVDRAGIVGAANKAMAHMVPGWPFDAVGLSYFSLTGRF 61 Query: 279 NLNQYTK-----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + + ++ + L HR+ + D L E + Sbjct: 62 QTEGEWRLDLADGRVVEIRADDGGDGLVLLIHRDLTAQCRALDRLNQLESELEQSLGLAS 121 Query: 334 F----VYSHGNLFYANPSF-LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + HG + + + +L + + ++ + + A +A + Sbjct: 122 MGSWRLDHHGMMLHLSREHGAMLLGHPEAMSLPMSEFIERYVHADDWPVLSAHIAHVEEL 181 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++ + G+ + + +E Sbjct: 182 GWPEGFTEHFEYRALRPDGRVLHMAVTSAIRSG-------QVVGVTQNITERKRMVEAVE 234 Query: 449 IEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTP 506 +L +I+E T + I E +L N + LF P + + T + Sbjct: 235 ANERRLRTIIETTPLPLVITRAKEAKVLYANSSFRALFDIPDDYDGVISSGTFYQHPEDR 294 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEW 564 + L LG T + + + +L + ++DI+ Sbjct: 295 ERLIETL-----GRDGVVRNFEALGRTWSGRNFWASVTAAVLELDGEPSLFVAVNDITAV 349 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L AK AE + KS+FLA +SHEIRTP+ II + ++ + Sbjct: 350 KKHEAELYAAKDAAEAAARTKSEFLAMMSHEIRTPMNGIIVMARLLLDTDLTA----EQR 405 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++ + SG+ ++ ++ND+LD SK+ESGK+++ P L + + L++ A EK + Sbjct: 406 DWLEIVTSSGDTLMTVLNDILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGL 465 Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR-- 740 I + +P I AD ++Q+ LN++ NAI FT GG + + +++ILR Sbjct: 466 SISVHYGAGVPGVIRADPTRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFA 525 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+G+ L + F Q+ +S R GTGLGL + + +V+ G + S Sbjct: 526 VRDTGIGIPAEALTRLFAAFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGY 585 Query: 801 GTLIEIIFPLY 811 GT P+ Sbjct: 586 GTTFTFTLPVS 596 >gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1364 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 115/638 (18%), Positives = 224/638 (35%), Gaps = 41/638 (6%) Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S++ S + + + T ++ P Sbjct: 245 ESTLGDRDDVAISLSDREDTQHTFYRSGIAAPESMRRAAHTQLLPIYGRTWVLTARPTLH 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + L N + L Sbjct: 305 FIGSLNQNSPWLMGSLVLGTAILLAALLGLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPV 384 G + + NP+ + Y + I + + Sbjct: 365 AETPDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ 424 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + D + A I +N+++ F ++ + + ++ ++ + Sbjct: 425 TMRHRDGHQVFVLASKAPI-IEHDNAVSGHSHFFRDISERVRSHQRIVDLNASLEHQVAE 483 Query: 445 R--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 R ++ + +IL I + G + N A KL GY +D++ + Sbjct: 484 RTSELVQFSVLQRAILAHAGYAIIATDSSGFVTMFNPAAEKLLGYSADDVIGRRKASQFI 543 Query: 503 QNTPSVMNHY-LTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKL 548 + L E + TLE +++ + L + + + L Sbjct: 544 EADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTL 603 Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + Y D++E K + +L A A + KSDFLA +SHEIRTP+ AI+ Sbjct: 604 RDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAIL 663 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +++ + IDRS +L+I+ND+LD SKIE+G+++L P L Sbjct: 664 GMLYLLQRSELPGAA----QDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDL 719 Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ L++ + K + + +L D + Q+ +N++ NAI FT G Sbjct: 720 NQLFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQG- 778 Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++++S + + ++ VRDTG+G++ + PF Q S R G+GLGL Sbjct: 779 EVVLSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGL 838 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +++ +++ G + S P +G+ + L T P Sbjct: 839 TISRRLIELMGGALEVESVPGRGSEFYFVITLERTDPP 876 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 37/382 (9%), Positives = 87/382 (22%), Gaps = 26/382 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-------LHIDPNNHIGDLLKRQNTW 143 G + + G A IG L + + D + L Q Sbjct: 368 PDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ--- 424 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 T+ +G V + + PI + SG F L+ Sbjct: 425 ----TMRHRDGHQ--VFVLASKAPIIEHDNAVSGHSHF--FRDISERVRSHQRIVDLNAS 476 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 H ++ + S + + + + + + S + + L + Sbjct: 477 LEH--QVAERTSELVQFSVLQRAILAHAGYAIIATDSSGFVTMFNPAAEKLLGYSADDVI 534 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E +Q + + S + + + Sbjct: 535 GRRKASQFIEADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRL 594 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + + + LT+ K + + SD A Sbjct: 595 PVLLTLST--LRDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMS 652 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + L + +T I + + + Sbjct: 653 HEIRTPMNAILGMLYLLQRSELPGAAQDMVTKIDRSARS----LLEIINDILDFSKIEAG 708 Query: 444 KRKMEIEVMQLCSILEATSDGI 465 + +E L + + +D + Sbjct: 709 RIDLERAPFDLNQLFDNIADLM 730 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 62/284 (21%), Gaps = 25/284 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145 D+ G++ + K +G A +IG R + + G Sbjct: 509 TDSSGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLE 568 Query: 146 -----------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + N + G+ G + Sbjct: 569 AVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306 + ++ + E I+L + + S + E + Sbjct: 687 RSARSLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 746 LPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 >gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] Length = 1364 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 129/703 (18%), Positives = 256/703 (36%), Gaps = 65/703 (9%) Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + P+ + SG+R GF ++ P+ +++ Sbjct: 185 SGEPVMTSPISLSGYRIPNESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ D+ + + A + V++ T ++ P Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N + + + L N + L Sbjct: 305 FVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + + NP+ + Y + + I+ L+TLL + + +D Sbjct: 365 AQTPDGRITHWNPAAEAMFGYTADEAIDQ--DLTTLLSPQPYAMSEVD------HADAAL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 ++ T++ + + + + + D + ++ Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A KL GY +++ + Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGR 536 Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + F+EQ H L E + TLE + + + L + Sbjct: 537 RKASQFVEQEELQERAHMLAEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D++E K + +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G+GLGL +++ +V+ G+ + S P +G+ + L ++ Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSA 874 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 51/442 (11%), Positives = 129/442 (29%), Gaps = 55/442 (12%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G G+G +H RV A + + ++ + + E+Y + + Sbjct: 99 RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 R + P++TS +++ + + Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPI----------SLSGYRIPNESG 206 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 F L +E + + +VY+ ++ S Sbjct: 207 FLVLLAVYREGMPLQTPQQR-------------------MLATSGWVYAPFSVEQMVRSA 247 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++D + + + ++A++P ++ + R I + Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDG 464 + M + + + + + ++ + M+L +++ +S+ Sbjct: 303 AGFVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I N A +FGY ++ + + T L + + Sbjct: 363 IVAQTPDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSP--QPYAMSEVDHADAALAGNA 420 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T+ ++ + + + S DIS+ + ++ E Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479 Query: 581 ESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 27/283 (9%), Positives = 68/283 (24%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138 D+ G++ + K +G A ++IG R L + + +L + L+ Sbjct: 509 TDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEQEELQERAHMLAEQTGTQVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 32/375 (8%), Positives = 81/375 (21%), Gaps = 12/375 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + G A + I L + + T+ Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMR 427 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G ++ + + PI SG F L+ H ++ Sbjct: 428 HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + S + K + + + + + + L + + Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E +Q + + + S + + + + Sbjct: 542 FVEQEELQERAHMLAEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 H + + LT+ K + + SD A + Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + L + + I + + + +E Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715 Query: 451 VMQLCSILEATSDGI 465 L + + +D + Sbjct: 716 PFDLNQLFDNIADLM 730 >gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 592 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 114/578 (19%), Positives = 220/578 (38%), Gaps = 30/578 (5%) Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 +K+ +++ T A + Y + +++ ++ + G Sbjct: 37 LAEIKDNLTNETRMAALMAGREGGDLYHDAQAIAAAIGKEVKARVT--IIARNGEVVGDS 94 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL 351 Q + E +H+N P + A EG + P V L + L Sbjct: 95 QVKADELKGLENHQNRPEILAAQKEGTGSSIRYSSTLQTPMLYVARPLELKNGERVTIRL 154 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 ++ + T+L A S+ T + A + Sbjct: 155 -ALPLEQLVKARSTIHTILGVAMALALLASLLFSYVLSNFTSRSLRAMASIASRIGKGEY 213 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + P + ++ E ++ ++ + + E +L +IL +G+ + + + Sbjct: 214 GLRV-PVKGRDELGELAMIMNDMSVRIEGQLAR--ISTERNRLDTILRGMGEGLMVTDAK 270 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N A L E++ +P ++ ++ I++ + + Sbjct: 271 GTITLVNPAFRDLLAIT-EEVEGRPL---IDITRHPALHSAYKTIIASKSERL--EEITL 324 Query: 532 STKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 K EK + + HDIS K+ + + DF+A Sbjct: 325 DAKGEKTILTHWVPLLDGDRLQGVVAVFHDISNIKRLE--------------KIRRDFVA 370 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTP+T I G++E + + R + + I + ++ DLL +S++ Sbjct: 371 NVSHELRTPVTVIKGYAETLLSGALAS-DPERAVRFVEIIHSHSERLTSLIGDLLTLSEL 429 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESG ++L V+++ V A+ L++ A +K I I S P IL D ++Q+ +N Sbjct: 430 ESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILGDRGRLEQVLIN 489 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +L NAI +TP G I + + + V DTG+G+ +L + + F ++ ++ Sbjct: 490 LLDNAIKYTPEKGTITVKAADEEK-MLKISVTDTGMGIPPKDLPRIFERFYRVDEARSRE 548 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V A+ G + ST KG+ Sbjct: 549 QGGTGLGLSIVKHIVQAHGGALSVESTVGKGSTFSFTL 586 >gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341] Length = 1324 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 105/375 (28%), Positives = 175/375 (46%), Gaps = 12/375 (3%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +RK+ + IL+AT + + +N EG+ L+ N L G ++++ K Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSPYD 519 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557 + + + E L E++ L + Sbjct: 520 IFTPAASQCFSEAHRALALQQTSRNYEVSLLDQKGEQRELLVYEASFGDQREQVHGIVGI 579 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E K+ + +L AKK+A+ S K DFLA +SHEIRTP+ AI+G + + N Sbjct: 580 LLDLTERKRMEEELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT 639 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +Y I+ S +L I+ND+LD SK+E+GK+++ +LD+ + IS++ L Sbjct: 640 T----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISL 695 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A EK I +IP ++ D + Q+ +N+ NA+ FT G +I+IS E Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQG-EIVISARVRQLNE 754 Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V+DTG+G+T +L F Q NS + GTGLGL ++K +V+ G+ Sbjct: 755 QQVTLFFAVKDTGIGITQEKLAGLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGEI 814 Query: 793 YIFSTPAKGTLIEII 807 S KG+ E Sbjct: 815 SAHSEEGKGSTFEFS 829 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 5/144 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + ++ G ++ + +G ++IG D+ + L Q T Sbjct: 485 MYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSPYDIFTPAASQCFSEAHRALALQQTSRN 544 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +L +G + + + RE GI+ + K Sbjct: 545 YEVSLLDQKGEQRELLV---YEASFGDQREQVHGI-VGILLDLTERKRMEEELRDAKKMA 600 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 33/246 (13%) Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + E L+ L + S + E L E +D Sbjct: 420 PIALLELGTVGMLSPQHYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQLNQEILD 479 Query: 328 KCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P P + G N FL L + I + A + A + + L Sbjct: 480 ATPNPMYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSP-YDIFTPAASQCFSEAHRALAL 538 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ R + + + E + + +Q + GI + + + + + Sbjct: 539 QQTSR-----NYEVSLLDQKGEQRELLVYEASFG-DQREQVHGIVGILLDLTERKRMEEE 592 Query: 447 MEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--ILSTNRAV 481 + ++ L S + I ++ + N + Sbjct: 593 LRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESA 652 Query: 482 SKLFGY 487 L G Sbjct: 653 KNLLGI 658 >gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis] Length = 579 Score = 361 bits (926), Expect = 3e-97, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 172/372 (46%), Gaps = 23/372 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 E + + +I + ++ E + + + P L Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 HD++E K+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ + I + + +V DLLD+SKIE L E + + E +L++ Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLK 440 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK I ++ + + + D +KQ+ LN+++NA+ +TP GG + I+ + Sbjct: 441 HKADEKGISLQLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERD- 499 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559 Query: 797 TPAKGTLIEIIF 808 P +GT+ + Sbjct: 560 EPGRGTVFTVTL 571 >gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium capsulatum ATCC 51196] gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium capsulatum ATCC 51196] Length = 799 Score = 361 bits (926), Expect = 4e-97, Method: Composition-based stats. Identities = 107/641 (16%), Positives = 209/641 (32%), Gaps = 45/641 (7%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVS 241 R S + + V I V Sbjct: 172 RSARARQRVERALTVERNFVSAVLDTMSALVLVLDTSGRIVRFNRSCEEISGYSFAELVG 231 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKES 299 + + + + + +L E + + T TL + + E Sbjct: 232 RSFIREMFSPEDRERAQQLFEQARQGALQETWEMRWRTRGGGVRRIAWASTTLADPAGEV 291 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYS-HGNLFYANPSFLLLTKY 354 + +L L+ + + G L N Y Sbjct: 292 NFVILTGMDVTLQVEAQNALRLSETRYRQLVEGSLGMVCTHDVEGRLLSINAHAAESLGY 351 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 S + AG P+ A + + + +++ +T Sbjct: 352 TSEEM---AGRKLVEFIPPQHRPGWAEYLKAINETGEHQG-----MLSLRRKDGGVCVIT 403 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + E G + + + ++ Q SIL + DGI ++ EG I Sbjct: 404 YRNKLVHFPDMEPF-VLGHGVDVTEKNEAEHRLRNLTRQRESILGSVGDGIFGMDMEGRI 462 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKIT 529 NRA + GY E++ + L + V + + LD ++ Sbjct: 463 TFVNRAALDMVGYEEEEVSGRDMHALLHHSRADGTPYPVDLCPIYKARQLDSPMRVDDEV 522 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ + + L + + DI+E ++ K Sbjct: 523 FW-HKDGTCFPVEYVACPLVDNGRVSGIVIAFQDITERQRL--------------DRMKD 567 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +F++ VSHE+RTPLT++ +I + + + + + ++ +VND+LD Sbjct: 568 EFISTVSHELRTPLTSLRAALGLIAGGALQRRP-EKVQQMFDVAIGNCDRLVRLVNDILD 626 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 ++ SGKM L + + + + A+ L A + I +R + D + Q Sbjct: 627 FERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRVEAEP--MDLWVDADRILQ 684 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++SNAI F+P+G +++ + E ++ VRD G G+ ++ + F Q+ S Sbjct: 685 TLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFERFQQVDAS 744 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL + + +V + G+ ++ S KG+ Sbjct: 745 DSRAMGGTGLGLAICRRIVRQHGGQIWVESEVGKGSSFFFT 785 Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 36/387 (9%), Positives = 87/387 (22%), Gaps = 31/387 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G + + + G +++G ++ + + + ++ Sbjct: 205 LDTSGRIVRFNRSCEEISGYSFAELVGRSFIREMFSPEDRERAQQLFEQARQGALQETWE 264 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205 W G + I A+ + E + F I+ V A + + ++ Sbjct: 265 MRWRTRGGGVR-RIAWASTTLADPAGEVN----FVILTGMDVTLQVEAQNALRLSETRYR 319 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 L E G + + S + +++ L Sbjct: 320 QLVEGSLGMVCTHDVEGRLLSINAHAAESLGYTSEEMAGRKLVEFIPPQHRPGWAEYLKA 379 Query: 264 SEESSLPEQEDFHTINLN----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 E+ + + + + Sbjct: 380 INETGEHQGMLSLRRKDGGVCVITYRNKLVHFPDMEPFVLGHGVDVTEKNEAEHRLRNLT 439 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI---------------- 362 + F G + + N + L + Y+ + Sbjct: 440 RQRESILGSVGDGIFGMDMEGRITFVNRAALDMVGYEEEEVSGRDMHALLHHSRADGTPY 499 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L + A +L + + + D TC + N S + Sbjct: 500 PVDLCPIYKARQLDSPMRVDDEVFWHKDGTCFPVEYVACPLVDNGRVSGIVIAFQDITER 559 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEI 449 Q + M I + R + Sbjct: 560 QRLDRMKDEFISTVSHELRTPLTSLRA 586 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 42/337 (12%), Positives = 90/337 (26%), Gaps = 33/337 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--------GDLL 137 + +D G + ++ +G ++ G + + D + L Sbjct: 453 IFGMDMEGRITFVNRAALDMVGYEEEEVSGRDMHALLHHSRADGTPYPVDLCPIYKARQL 512 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + W +GT P++ A P+ N SG IV + + + L Sbjct: 513 DSPMRVDDE-VFWHKDGTCF--PVEYVACPLVD-NGRVSG-----IVIAFQDITERQRLD 563 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT- 256 + D+ S + + + + + + R KV + + D L Sbjct: 564 RMKDEFISTVSHELRTPLTSLRAALGLIAG---GALQRRPEKVQQMFDVAIGNCDRLVRL 620 Query: 257 ----EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + L S + L + L + Q+ + N E Sbjct: 621 VNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRVEAEPMDLWVDAD 680 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 NL + P V ++ + + + + E + Sbjct: 681 RILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFERFQQ 740 Query: 373 PKLSDNNAIK--------PVMLYRSDRTCIAASARLH 401 SD+ A+ + R I + + Sbjct: 741 VDASDSRAMGGTGLGLAICRRIVRQHGGQIWVESEVG 777 >gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 810 Score = 361 bits (926), Expect = 4e-97, Method: Composition-based stats. Identities = 99/523 (18%), Positives = 218/523 (41%), Gaps = 38/523 (7%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-------LFYANPSFLLLTKYKSVD 358 + P + + D P + + G+ + N + + Y + Sbjct: 12 PDSPDFLKSDNAQAGILKALWDNSPYGIIIIAKGSDPKQPIVIGDCNQATCQMHGYTREE 71 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 I + + P S + + + + + + Sbjct: 72 LIGQ--SMDLIHAVPWTHAIEDN----YLESMQGTPPVTGESLHRRKDGSTFMIEFTVTH 125 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + P + + + + + + + +E++ +GI + I+ T+ Sbjct: 126 TLIDGVPCAIGFDRAISAGTEQ---ENTLHEIGNRWMNAMESSDEGIWDFDVPNGIVWTS 182 Query: 479 RAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + GYP ++ + T + + + L ++ S ++ L+ + Sbjct: 183 HRWQSILGYPPLPKEYQIEEITERVHPDDRNQFQQNLNDVRSSQTKR-LDIEVRFQNSQN 241 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 LR+ K S +M D+++ K+++ L A+ AE + KS FLA + Sbjct: 242 TWTWLRLRGKVAHDSHGDANRLLGSMTDVTQRKRDEQALQVARDKAESANRAKSQFLAVM 301 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ ++G + ++ + + + Y I+ SG +L+I++++L SK+E+ Sbjct: 302 SHEIRTPMNGVMGMAALLASTKL----DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEA 357 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G + L ++ E ++ A+ ++ A EK + + + +++P +++ D +KQ+ +N+ Sbjct: 358 GNIELEQNAFNIGECLTSALQIISPMAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNL 417 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQ 762 L NA+ FT +G +I + ++E+ + L VRDTG+G++ ++ +PF Q Sbjct: 418 LGNAVKFTHAG-EIELRAKAENHEDPTTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQ 476 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 S R GTGLGL +++++++ G I S P +G+ Sbjct: 477 EDASTTRRYGGTGLGLAISRSLLELMGGAIEIDSAPGEGSTFT 519 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 18/242 (7%), Positives = 68/242 (28%), Gaps = 12/242 (4%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTN 156 ++ + G ++IG + + + ++ + ++ G++ +G+ Sbjct: 57 CNQATCQMHGYTREELIGQSMDLIHAVPWTHAIEDNYLESMQGTPPVTGESLHRRKDGST 116 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 + + I + GF ++ L + ++ + + +G Sbjct: 117 FMIEFTVTHTLI---DG-VPCAIGFDRA-ISAGTEQENTLHEIGNRWMNAMESSDEGIWD 171 Query: 217 VEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLP 270 + +++ L H DD + ++ + +S+ L Sbjct: 172 FDVPNGIVWTSHRWQSILGYPPLPKEYQIEEITERVHPDDRNQFQQNLNDVRSSQTKRLD 231 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + F + ++ ++ L + ++ + + + Sbjct: 232 IEVRFQNSQNTWTWLRLRGKVAHDSHGDANRLLGSMTDVTQRKRDEQALQVARDKAESAN 291 Query: 331 IP 332 Sbjct: 292 RA 293 >gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 790 Score = 361 bits (926), Expect = 4e-97, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 233/647 (36%), Gaps = 32/647 (4%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--- 243 R + ++ E V + F++ P M + L Sbjct: 118 TRGQLKKQIKQLEERQRNLEHAEATSNVIVVYTDLEGTFTKVPPGFCKIMGYTEAELLNK 177 Query: 244 ---TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + L+ E++++ + + + +++ Sbjct: 178 NYKEITHGEDLQISVENTDSLIRGEKTAIKMDKRYIRKDGQIIWVDLNESVARDHYGNPC 237 Query: 301 EYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355 L++ + +E E D + G + YA+PS + T Y+ Sbjct: 238 YLLAYIRDITEEKRMKNALEESEMKLRRITDNISDMIVETTMDGIIRYASPSNKVSTGYE 297 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + I + + D+ + + + + + + Sbjct: 298 VEEMIGES------ILEKMHPDDIDKVKITMEKLKEDLTWSKVEVRCQHRQGHYAWIEIM 351 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + + + + S+ E + D I++ N E + Sbjct: 352 GNVLIGDNDG-ASGLIFCARDISERKKVEMDLYESEERYRSLFENSPDAISVYNDE-KFI 409 Query: 476 STNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 NRA +KL G + ++ + F+ ++ EI + Sbjct: 410 LANRAAAKLVGLKDPKQLIGRSVMDFIHSSSYEKKLEATEEIKIGKVEPGYFTEEKIVDI 469 Query: 535 EEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK------NKLSHAKKIAEKESSHKS 586 +++ + + + + DIS+ K+ + + ++ K+ Sbjct: 470 YGRVIDVEVGCSLLSYNGRMAVQVVSRDISDRKRAEILEKHMAQKQQLIHEMQECDRLKT 529 Query: 587 DFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 +F + +SHE+RTPL I+G +++ N+ ++ + ++ +L +VN+ Sbjct: 530 EFFSNISHELRTPLNVILGSLQLMNLYTNKEASMTYPNNLSKHVGIMRQNSYRLLRLVNN 589 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 L+D++KI+SG + + ++ V E V + ++I + I D Sbjct: 590 LIDMTKIDSGFCEMQLQNHNIVSIVEEITLSVAAFIENRQITLLFDTEVEERMIACDPDK 649 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +++I LN+LSN++ FT GGQI + V++ ++DTG+G+ +L+ + F Q Sbjct: 650 IERIILNLLSNSVKFTNYGGQITVYIE-EIEGNVVISIKDTGIGIETEKLDMIFQRFRQA 708 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + R EG+G+GL LAK++++ G + S +G+ + FP+ Sbjct: 709 DDLLTRRNEGSGIGLSLAKSLIELQGGTISVTSEYGRGSEFTVTFPI 755 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 36/383 (9%), Positives = 91/383 (23%), Gaps = 17/383 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G ++ K +G +++ +++ + + D L R K Sbjct: 150 TDLEGTFTKVPPGFCKIMGYTEAELLNKNYKEITHGEDLQISVENTDSLIRGEKTAIKMD 209 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 I + +DL + + + + + K + Sbjct: 210 KRYIRKDGQIIWVDLNESVARDHYGNPCYL--LAYIRDITEEKRMKNALEESEMKLRRIT 267 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + I ++ + H DD+ K + E Sbjct: 268 DNISDMIVETTMDGIIRYASPSNKVSTGYEVEEMIGESILEKMHPDDIDKVKITMEKLKE 327 Query: 266 ESSLPEQEDF-HTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + + E + + L S F + E E Sbjct: 328 DLTWSKVEVRCQHRQGHYAWIEIMGNVLIGDNDGASGLIFCARDISERKKVEMDLYESEE 387 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + P VY+ AN + L K + + + + A Sbjct: 388 RYRSLFENSPDAISVYNDEKFILANRAAAKLVGLKDPKQLIGRSVMDFIHSSSYEKKLEA 447 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + + + + + M + + D Sbjct: 448 TEEIKIGKVEPGYFTEEKIV------DIYGRVIDVEVGCSLLSYNGRMAVQVVSRDISDR 501 Query: 441 RINKRKMEIEVMQLCSILEATSD 463 + + +E + Q ++ + Sbjct: 502 KRAEI-LEKHMAQKQQLIHEMQE 523 >gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC BAA-1498] Length = 769 Score = 361 bits (926), Expect = 4e-97, Method: Composition-based stats. Identities = 125/506 (24%), Positives = 224/506 (44%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y+ + + ++ ++D + + +M + I Sbjct: 281 VYWSRAMYEMLGYEPQNALLSISQITAIIDPKDANFFELAQELMESKKKHIDINV----- 335 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M + P GI + + + +++ +E Sbjct: 336 PMRHAEGHYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFAEQTAQADLRIRDAIENI 392 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E + ++ Y +I Sbjct: 393 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKIDESG- 451 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T L + ++ DISE KQ++ K Sbjct: 452 ----NLTSIRQTANGYWLKIN---ERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSF 504 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGF 564 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE++ FGPLG+ RY EY + I SG +L ++ND+LD+SKIE+G+ L + ++L+ Sbjct: 565 SEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEP 624 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SE I + A K+I + T+ + D R++KQI LN++SNA+ FTPSGG I Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTPSGGSID 683 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I N +I ++DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLE 742 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S KGT++ II P+ Sbjct: 743 LHKGKLEITSKEGKGTIVTIIMPIQQ 768 >gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM 319] Length = 590 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 169/364 (46%), Gaps = 25/364 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NRA + F +D L + E Sbjct: 242 EMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFLYHLYYEVFEH---K 298 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + + +I ++ + +++ L E + + L HDI+E K Sbjct: 299 EIIKLVEKIFMTEV-KVRKQVVLPLNIERRYFDVYGAPIIGLNDEWKGIVLVFHDITELK 357 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE++TP+T+I GFSE + + G + +P+ + Sbjct: 358 KLEQV--------------RRDFVANVSHELKTPITSIKGFSETLLD---GAMEDPQLRQ 400 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I + ++ DLLD+SK+E L V L+ + E +++ A EK I Sbjct: 401 QFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEI 460 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + I D + + Q+ +N++ NA+ +T GG + +S E + + V+DT Sbjct: 461 TLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLE-EEEETITVHVQDT 519 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E+ + + F ++ ++ GTGLGL + K +V+A+ G+ + S KGT Sbjct: 520 GIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTF 579 Query: 805 EIIF 808 + Sbjct: 580 SVKL 583 >gi|323139164|ref|ZP_08074220.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] gi|322395547|gb|EFX98092.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242] Length = 787 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 95/655 (14%), Positives = 211/655 (32%), Gaps = 45/655 (6%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + ++ + + H ++ I + P R + + E + L Sbjct: 8 AERTAEELVRGILDSLPQHIALLDRDGVILAVNEP--WRRFARQGGARPEAVLEGANYLA 65 Query: 256 TEKYPLLTSEESSLPEQ----------------EDFHTINLNQYTKKQYFGTLQ------ 293 + T + ++ E + + + Sbjct: 66 ACRAAAETGDATAREALAGLTKLFSGACDAFTFEYPCATPERELWFEMHASRAAFGVSKF 125 Query: 294 --NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFL 349 +++ + + +D PI + G+ N + Sbjct: 126 VVSHADVTTRKNAEEALRESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNRACE 185 Query: 350 LLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L ++ A L + + + + ++ + I Sbjct: 186 ELLGTTPGAELSMTAPDAPALRVFRQGRKLSVDELPLQRALAGELVS---DILEIVRPDG 242 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 ++ + + E G + + + + + +++EA DG+ + Sbjct: 243 RTVTVYAKAAPLHYENGETNGAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGVFVA 302 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 ++ + N A+ + GY + PF + + N + + Sbjct: 303 -QDYRFVFANAALPAMLGYTPAEFWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYE 361 Query: 529 TLGSTKEEKL---LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 K + LR + + D++E K+ + L K Sbjct: 362 ARAVPKSGGPPIDMELRARRIQYRGRPAVLGVLRDVTERKKTEQAL-------IAADRRK 414 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA ++HE+R PL I + V++ IDR ++ +V++LL Sbjct: 415 DEFLATLAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALVEIIDRQVGHLIRLVDELL 474 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 ++S+I GK+ L E + L + +A+ + + +R + + AD + Sbjct: 475 EVSRITRGKIELMIERIDLAAVIRQAVETSRPVIDRGGHALRVELPDAPLPLDADPVRMT 534 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ N+L+NA +T GG+I++ E ++ V D+G+G+ L + F Q+ Sbjct: 535 QVFTNLLNNAAKYTEPGGEIVVRADRR-GREAVITVTDSGLGIPPEMLPRVFDLFTQVDR 593 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819 + G G+GL L ++++ G S +GT I PL T+ + Sbjct: 594 TLGRAQGGLGIGLALVRSLLKLQGGSVEAESAGLGRGTTFTIRLPLAATAGTQEA 648 Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 24/303 (7%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYAN---PSFLLLTKYKSVDDIEIAG 364 ++ E L +D P + G + N F + +E A Sbjct: 3 TPVAGAERTAEELVRGILDSLPQHIALLDRDGVILAVNEPWRRFARQGGARPEAVLEGAN 62 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L+ A + D A + + C A + RE M Sbjct: 63 YLAACRAAAETGDATAREALAGLTKLFSGACDAFTFEYPCATPERELWFEMHASRAAFGV 122 Query: 423 QFPENMPQNGIEP--EDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNR 479 + + R ++R+ +L +IL+ G+ ++ G + NR Sbjct: 123 SKFVVSHADVTTRKNAEEALRESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNR 182 Query: 480 AVSKLFGYPVEDILRKP------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 A +L G L VF + SV L L+ +L + +I Sbjct: 183 ACEELLGTTPGAELSMTAPDAPALRVFRQGRKLSVDELPLQRALAGELVSDILEIVR--- 239 Query: 534 KEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-- 587 + + +++ L ++ DI+ K+ + L +++ D Sbjct: 240 PDGRTVTVYAKAAPLHYENGETNGAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGV 299 Query: 588 FLA 590 F+A Sbjct: 300 FVA 302 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 33/409 (8%), Positives = 92/409 (22%), Gaps = 52/409 (12%) Query: 89 IDAHGYLKEIS---EELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKR-QNTW 143 +D G + ++ + G ++ G + + L + Sbjct: 30 LDRDGVILAVNEPWRRFARQGGARPEAVLEGANYLAACRAAAETGDATAREALAGLTKLF 89 Query: 144 YG----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDP----- 193 G T +P + ++ A +R G F + H + Sbjct: 90 SGACDAFTFEYPCATPERELWFEMHA------SRAAFGVSKFVVSHADVTTRKNAEEALR 143 Query: 194 -------------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 A+ + S + + H + ++ Sbjct: 144 ESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNRACEELLGTTPGAELSMTAPDA 203 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNS 296 +L + + + + E + + + + T L + Sbjct: 204 PALRVFRQGRKLSVDELPLQRALAGE-LVSDILEIVRPDGRTVTVYAKAAPLHYENGETN 262 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 +L + E E ++ FV +AN + + Y Sbjct: 263 GAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGVFVAQDYRFVFANAALPAMLGYTP 322 Query: 357 VDDIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + D + + D + + + + M Sbjct: 323 AE------FWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYEARAVPKSGGPPIDME 376 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEA 460 + G+ + + + ++ + + + + L Sbjct: 377 LRARRIQYRGRPA--VLGVLRDVTERKKTEQALIAADRRKDEFLATLAH 423 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 24/260 (9%), Positives = 57/260 (21%), Gaps = 18/260 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW---YGKTTLW 150 + LP +G + M V + N + Sbjct: 306 RFVFANAALPAMLGYTPAEFWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYEARAV 365 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK-----FS 205 P G + ++L A I R R G++ D++ + Sbjct: 366 PKSGGP-PIDMELRARRIQYRGRPAV----LGVLRDVTERKKTEQALIAADRRKDEFLAT 420 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 HE++ + + + + P + + + L E + Sbjct: 421 LAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALVEIIDRQVGHLIRLVDELLEVSRIT 480 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + + + + + L A + Sbjct: 481 RGKIELMIERIDLAAVIRQAVETSRPVIDRGGHALRVELPDAPLPLDADPVRMTQVFTNL 540 Query: 326 VDKC-----PIPFFVYSHGN 340 ++ P V Sbjct: 541 LNNAAKYTEPGGEIVVRADR 560 >gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546] Length = 1052 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 15/378 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + R ++ +I+E +AII+ + I+ N + +GY EDI Sbjct: 152 EIELRTRDLQASEALSRTIIEGAPSSVAIIDNKQRIILWNNTAEQTYGYRFEDIEGSNLC 211 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553 L P + L+ L + + + T +++ + I I Sbjct: 212 ELLRIELPEELKDILSGELRFEDQSKVSGGFFEVETYTSTGRMIPIDLGITIFLFDDQCR 271 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ + D++ K +++L+ A+ AE+ KS FLA +SHEIRTP+ AIIG S + Sbjct: 272 AAMFLRDVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 331 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y + I S +L+L I+ND+LD SKIE+GK+++ LD+ + Sbjct: 332 ELTP----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSM 387 Query: 674 LVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + A EK + + ++P++ D + QI +N+++NA+ FT G +I + T T Sbjct: 388 VTGQKAFEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQG-EITVHVTRT 446 Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E+ V+DTG+GM+ + +K F Q S R GTGLGL + + +V+ Sbjct: 447 PHSDQKVELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELM 506 Query: 789 MGKFYIFSTPAKGTLIEI 806 G + S +G+ Sbjct: 507 GGSIQVESILGQGSEFTF 524 >gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris trichoides DG6] Length = 906 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 117/648 (18%), Positives = 219/648 (33%), Gaps = 49/648 (7%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSL 243 + + + + + + + I + + + V Sbjct: 4 STSAANQPQGSSHDASVLTRIAQHSSNAMILTDNQGRIEWVNTGFTRLTGYVLADVVGHK 63 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFE 301 K + + E N Y + + ++ Sbjct: 64 PGDLLQGPGTDKATVERMSLAIRQGQGFSEIVLNYNKIGLPYWISLQVSPIFDAQRQLSH 123 Query: 302 YLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 +L S F + E P+ FV G L L K Sbjct: 124 FLGVVTPISEQRYLAHLFWQNETYLRMVFQTMPVILFVLDQEGTFILGEGKGLELLGLKP 183 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 G + +D I + A + + Sbjct: 184 -------GMFAGQSVFSLYADQPQIIQSVRRALAGEDFAILNQYKDFSFE--------TR 228 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + G+ + + +L +++ G+ + + + + Sbjct: 229 FHPMYDVQGQVTGVIGVAFDISPRLQATAASQNANSRLSTLIANLQAGVLVEDDDCRLTL 288 Query: 477 TNRAVSKLFGY--PVEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKIT 529 N+ +FG P + ++ + +IL T Sbjct: 289 VNQTFCTIFGLSMPPDALIGMDCYDVARMIAPSLEHSESFFTHFQQILEQRQPVTG---Y 345 Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + + L + + D+SE + +L AK+ AE + KS F Sbjct: 346 MVRMADGRSLECDFVPVFEDDGYHGHLWLYRDVSERVRGTAELVRAKEAAEAATMAKSSF 405 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ A+IG + ++ + +YA I SG+++L ++N++LD S Sbjct: 406 LATMSHEIRTPMNAVIGMTTLMLDTDLTR----EQRQYAETIRTSGDMLLALINNILDFS 461 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707 KIESG M L +P SL + E L+ A EK I++ + +P I D V+QI Sbjct: 462 KIESGHMELEQQPFSLHACIEEVNELLGPKAAEKGIVLTGMVSGQVPAMISGDSTRVRQI 521 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPF 760 +N++SNAI FT G ++ + + +E + + V DTG+G+ +++ +PF Sbjct: 522 LVNLISNAIKFTNVG-EVTVRASARPDEALSGEHLIITITVADTGIGIPEDRMDRLFRPF 580 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 QI S R GTGLGL +++ + + G + S G+ + F Sbjct: 581 SQIDASTTRRFGGTGLGLAISRRLSELMGGSITVQSKVGVGSSFRVTF 628 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 28/370 (7%), Positives = 90/370 (24%), Gaps = 17/370 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G ++ ++ + G ++G + D+ D + +++ + Sbjct: 35 TDNQGRIEWVNTGFTRLTGYVLADVVGHKPGDLLQGPGTDKATVERMSLAIRQGQGFSEI 94 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G ++ + ++ PI+ R+ S F G +V L + + Sbjct: 95 VLNYNKIGLPYWISLQVS--PIFDAQRQLSHFLG--VVTPISEQRYLAHLFWQNETYLRM 150 Query: 207 LHEIKKGHSSVEKEKYDIF--SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + V ++ + + + + + D + + Sbjct: 151 VFQTMPVILFVLDQEGTFILGEGKGLELLGLKPGMFAGQSVFSLYADQPQIIQSVRRALA 210 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E + + + + +A + Sbjct: 211 GEDFAILNQYKDFSFETR--FHPMYDVQGQVTGVIGVAFDISPRLQATAASQNANSRLST 268 Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + V L N +F + D + +++ Sbjct: 269 LIANLQAGVLVEDDDCRLTLVNQTFCTIFGLSMPPDALIGMDCYDVARMIAPSLEHSESF 328 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + ++ SL F+P + + + + + Sbjct: 329 FTHFQQILEQRQPVTGYM--VRMADGRSLECDFVPVFEDDG---YHGHLWLYRDVSERVR 383 Query: 443 NKRKMEIEVM 452 ++ Sbjct: 384 GTAELVRAKE 393 >gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae] Length = 1268 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 124/676 (18%), Positives = 236/676 (34%), Gaps = 46/676 (6%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A REF G GFG++ + N A R+ + + + + + + Sbjct: 96 AYTQARDYKREFPGAHGFGLI-IKVEPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 154 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 I + + LT+ + + E L Sbjct: 155 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLILM 214 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + Q++ + P L + F+ Sbjct: 215 PVYKTTTVPQDSRQRLEHLFGWSYAPILINEVLKSVAGLEN-------DVFLQISDITEQ 267 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 F + D ++ + R+ + + + Sbjct: 268 TPIEFFSQEVKDTYDAALQHKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFEVMAV 327 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453 + + + + +Q + + E + ++E +V Sbjct: 328 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 386 Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511 SIL + I + EGII + N A KL GY E++L + + Sbjct: 387 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 446 Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 + T + L QT TK + + +++ + L + Sbjct: 447 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 506 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+++ + + +L+ AK+ AE + KS+FLA +SHEIRTP+ ++G +++ N Sbjct: 507 LGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 566 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + R +Y + +L ++ND+LD SKIE+GK+ L P SL + + + + Sbjct: 567 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLV 622 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732 A +K + + ++P +L D +KQ+ +N++ NAI FT G I I + Sbjct: 623 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 682 Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E+ ++DTG+G+T + F Q +S R GTGLGL ++K +V+ G Sbjct: 683 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 742 Query: 791 KFYIFSTPAKGTLIEI 806 + + S G+ Sbjct: 743 EIGVESEFGCGSTFSF 758 Score = 44.2 bits (103), Expect = 0.089, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 17/152 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134 D G + + K +G A +++ ++ L + Sbjct: 402 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 461 Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 L+ + W + T V + L + + +GF G I Sbjct: 462 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGFLG--IAFDLTKQLKY 519 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + ++ ++ K + + Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTP 551 >gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1125 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 125/635 (19%), Positives = 232/635 (36%), Gaps = 30/635 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVS 241 + + RA + + L + G ++ + + + + Sbjct: 363 QIASLIRQKRAAKEARRQLKLALATGRIGTWEIDLKTQTLTASNQHKYNYGLPAEADLTY 422 Query: 242 SLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + H D T Y S+ E+ + + + + + + E+ Sbjct: 423 EIVQSRIHPSDCDRVTAAYQATISQGIGFDEEYRLVWADGSIHWLISRAERVCDETGEAD 482 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYK 355 + + ++ + + F G L YAN L L Y+ Sbjct: 483 RLIGVSIDVTERKQAEQAAKVGGQRFRDVAESNLFGVVFGTLSGELSYANDYVLDLLGYR 542 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + A + A + R TC + + + + Sbjct: 543 AHELASHQVRWDQITPAEFALADQA--AINQLRETGTCEPYE---KAFRHKDGSKVPVLV 597 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 ++ + + E + + D A+ N EG Sbjct: 598 AATLLQQVADQSQEVMAFILDLTRLKQVT----EERDRF---FRLSPDMHAVGNFEGYFT 650 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A K+ GY ++ +P+ F+ + + + + + +E K+ Sbjct: 651 QVNPAWVKVLGYTSSELTAQPYLFFIHPDDREMTAAIAANLTASEDP--IEFENRYRCKD 708 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 L + L + DI+ KQ + A++ AE+ + K +FLA VSHE Sbjct: 709 GSYRWLLWKVTALIAEGRFYAVARDITTRKQVALEREAAREAAERANRIKDEFLAVVSHE 768 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +R+PL I+G+S+++K G L R I+R+ L + ++ DLLDIS+I K+ Sbjct: 769 LRSPLNPILGWSQLLKR---GTLDEKRTKLALASIERNAQLQVQLIGDLLDISRILRNKL 825 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L PV L+ + A+ V+ EK I I T+ ++ D ++Q+ N+LSNA Sbjct: 826 ILDKAPVDLESIIFAALETVKQATAEKSIHIETTITP--CTVVGDAVRLQQVVWNLLSNA 883 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + FTP G I ++ T EV++ V DTG G+ L + F Q S + G G Sbjct: 884 VKFTPRDGSITVTVT-ADVSEVVIEVSDTGKGIAADFLPFVFEHFRQENYSTTRKFGGLG 942 Query: 776 LGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 LGL + + +VD + G + S +GT + P Sbjct: 943 LGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLP 977 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 16/152 (10%) Query: 74 FVFDPIPRTV-RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F P V F GY +++ K +G + ++ + Sbjct: 633 FRLSPDMHAVGNF------EGYFTQVNPAWVKVLGYTSSELTAQPYLFFIHPDDREMTAA 686 Query: 133 IGDLL-KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 I L ++ + +G+ ++ + AL F + + Sbjct: 687 IAANLTASEDPIEFENRYRCKDGSYRWLLWKVTAL---IAEGRF-----YAVARDITTRK 738 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + + + IK +V + Sbjct: 739 QVALEREAAREAAERANRIKDEFLAVVSHELR 770 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 20/224 (8%) Query: 93 GYLKEISEELPKTIGNYAFKMIGM--RLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTL 149 G L ++ + +G A ++ R ++ + I L + + Sbjct: 526 GELSYANDYVLDLLGYRAHELASHQVRWDQITPAEFALADQAAINQLRETGTCEPYEKAF 585 Query: 150 WPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRVDNDPRALGK--RLDKKF 204 +G+ VP+ +AA + +++E F I+ + R+ + RL Sbjct: 586 RHKDGS--KVPVLVAATLLQQVADQSQEVMAF----ILDLTRLKQVTEERDRFFRLSPDM 639 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + V + S + + D + LT+ Sbjct: 640 HAVGNFEGYFTQVNPAWVKVLGYTSSELTAQ------PYLFFIHPDDREMTAAIAANLTA 693 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 E + + + + + L + Sbjct: 694 SEDPIEFENRYRCKDGSYRWLLWKVTALIAEGRFYAVARDITTR 737 >gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1582 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 123/664 (18%), Positives = 232/664 (34%), Gaps = 44/664 (6%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 VN + + RL + H + R + Sbjct: 419 RVNTRTLELQERETRLWDLYEHSPVAYASLDIKGNFIKHNLAFAQLTGREREEFSHLKFN 478 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFE 301 + H ++ + +L+ E +S E F ++ L Sbjct: 479 DVIKHSEEFTQELLDHVLSGEVTSDIRVELFRDDKQKKFASMTVISKLDEQGKLEDIRLS 538 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYK 355 L + + V F Y + Y +P +T Y+ Sbjct: 539 LLDVTQREMVRKELKYNQAQFSSMVSNIQGAVFRYRLSEDWRTSEMLYTSPKMAQITGYE 598 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + A ++ + + R D + + A R+ + F Sbjct: 599 IEFFLGDAPQVNLFDLIHPADVDEFNLQMESSRLDGSSLRADVRIINAS---NIERYVQF 655 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EG 472 N + + + + ++ K+ +L + G+ + E Sbjct: 656 RALFSVNASGSAEYLDVSIFDITEQKSSELKLHESEERLDVASSSAQLGMW--DSFPLES 713 Query: 473 IILSTNRAVSKLFGYPVEDIL------------RKPFTVFLEQNTPSVMNHYLTEILSLD 520 +L N + GY ++D+ + + + + + + + Sbjct: 714 KVL-INHVCVTMLGYKMDDLCISNDKWSELKSGNRTWLGLIHPDDRELYTELIEAHI-TG 771 Query: 521 LRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 + + + L + + S +I KQ + +L +K Sbjct: 772 NEEIYRQELRLLNHSGQYEWMLSVGKVFERDNQGRAIRISGINVNIDAAKQLEKELELSK 831 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + A+ + KSDFLA +SHEIRTP+ AIIG S + + + Y + ++RS Sbjct: 832 QKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETDL----DRKQRNYIDKVNRSAE 887 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD SKIE+GK+++ SL++ + + LV A +K I + + +++P Sbjct: 888 SLLGIINDILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLP 947 Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH--TSNEEVILRVRDTGVGMTNY 751 D + Q+ N+ +NAI FT G QI + +N E+ + DTG+GM+ Sbjct: 948 FYFNGDPLRLSQVLTNLSNNAIKFTEQGEVQIKVYAHSINETNIELAFEISDTGIGMSKE 1007 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K K F Q +S + GTGLGL +++ +V+ G S G+ + I PL Sbjct: 1008 QQLKLFKAFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISFESEEGVGSCFKFILPLT 1067 Query: 812 DTSH 815 S Sbjct: 1068 PASA 1071 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 55/505 (10%), Positives = 129/505 (25%), Gaps = 57/505 (11%) Query: 45 CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR-TVRFTWNIDAHGYLKEISEELP 103 H+ + N ++ + T L T ++D V + ++D G + + Sbjct: 405 IHEQLKAVNEKLED-RVNTRTLELQERETRLWDLYEHSPVAYA-SLDIKGNFIKHNLAFA 462 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 + G + ++ DV + +L + T + + Sbjct: 463 QLTGREREEFSHLKFNDVIKHSEEFTQELLDHVLSGEVT-SDIRVELFRD-DKQKKFASM 520 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + + R + R K +FS + +G + D Sbjct: 521 TVISKLDEQGKLEDIR--LSLLDVTQREMVRKELKYNQAQFSSMVSNIQGAVFRYRLSED 578 Query: 224 IFSQQ---SPPPHLRMKNKVSSLTEYYAHK--------DDVLKTEKYPLLTSEESSLPEQ 272 + + + P ++ A + + + +S + Sbjct: 579 WRTSEMLYTSPKMAQITGYEIEFFLGDAPQVNLFDLIHPADVDEFNLQMESSRLDGSSLR 638 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEY------LSHRNHPSLSAYFDEGENLTPETV 326 D IN + + F L + + S E E Sbjct: 639 ADVRIINASNIERYVQFRALFSVNASGSAEYLDVSIFDITEQKSSELKLHESEERLDVAS 698 Query: 327 DKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSDN 378 + + + + N + + YK D E+ G T L D Sbjct: 699 SSAQLGMWDSFPLESKVLINHVCVTMLGYKMDDLCISNDKWSELKSGNRTWLGLIHPDDR 758 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 ++ L + + + ++ + + + +GI Sbjct: 759 ELYTELIEAHITGNEEIYRQELRLLNHSGQYEWMLSVGKVFERDNQGRAIRISGINVNID 818 Query: 439 DTRINKRKMEIEVMQLCS-------ILEATS-------DGIAI---------INREGI-- 473 + ++++E+ + S L S + I ++R+ Sbjct: 819 AAKQLEKELELSKQKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETDLDRKQRNY 878 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFT 498 I NR+ L G + + Sbjct: 879 IDKVNRSAESLLGIINDILDFSKIE 903 >gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 734 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 121/404 (29%), Positives = 205/404 (50%), Gaps = 10/404 (2%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTR-----INKRKMEIEVMQLCSILEATSDGIAII 468 + + Q + + G + DT + ++ + + + + G++ Sbjct: 322 RVRAGDMSAQAGGGIGEVGEMGDTFDTMVGALNEREARLADSEDRFRATFDQAAVGMSHS 381 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + + NR + + GY E+++ + + + ++ D++ Sbjct: 382 TPDRRFIRMNRRFASMLGYEPEELIGRSTLSITHPEDRILATDEIAAMIRGDIQS-FATE 440 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 K+ + + + + L DI KQ + +L AK+ AE S K Sbjct: 441 KRYIRKDGSIAWVNLTLSALRRDGRVEYLIGVTEDIERRKQAEVQLLAAKEQAESASRAK 500 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 SDFLA +SHE+RTPL AIIGF+E + +Q GP+ RY EYA I SG +L I+ D+L Sbjct: 501 SDFLAGMSHELRTPLNAIIGFAETMYSQVLGPIP-ERYREYAGDIAASGRHLLGIITDIL 559 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++KIE+G+M L PV + V AI L++ R+ + + ++PRILAD R ++ Sbjct: 560 DLAKIEAGRMELDENPVEIAPVVEAAIRLLRDRGTAARLDLHSDIPASLPRILADERRIR 619 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ +N+L+NA+ FTP GG + +S T++ + L V DTG+GMT+ E+ +A++PF Q+ Sbjct: 620 QVVINLLANAVKFTPHGGSVSVSANLTTDGGLALHVSDTGIGMTDEEMSQAVEPFVQVDA 679 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R EGTGLGLP+ A+++ + G I S P +GT + + FP Sbjct: 680 RIARRHEGTGLGLPMVAAIMEMHRGTIAIASRPNQGTTVTVTFP 723 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 61/248 (24%), Gaps = 14/248 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQ-NTWYGKTT 148 ++ +G ++IG ++ I + I +++ ++ + Sbjct: 383 PDRRFIRMNRRFASMLGYEPEELIGRSTLSITHPEDRILATDEIAAMIRGDIQSFATEKR 442 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ +V + L+AL R+ G+ ++ Sbjct: 443 YIRKDGSIAWVNLTLSAL---RRDGRVEYL--IGVTEDIERRKQAEVQLLAAKEQAESAS 497 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEES 267 K + + M ++V + + LL Sbjct: 498 RAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPIPERYREYAGDIAASGRHLLGIITD 557 Query: 268 SL------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + + + L + + H + P+ E Sbjct: 558 ILDLAKIEAGRMELDENPVEIAPVVEAAIRLLRDRGTAARLDLHSDIPASLPRILADERR 617 Query: 322 TPETVDKC 329 + V Sbjct: 618 IRQVVINL 625 >gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1] Length = 1268 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 124/676 (18%), Positives = 236/676 (34%), Gaps = 46/676 (6%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A REF G GFG++ + N A R+ + + + + + + Sbjct: 96 AYTQARDYKREFPGAHGFGLI-IKVEPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 154 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 I + + LT+ + + E L Sbjct: 155 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLILM 214 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + Q++ + P L + F+ Sbjct: 215 PVYKTTTVPQDSRQRLEHLFGWSYAPILINEVLKSVAGLEN-------DVFLQISDITEQ 267 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 F + D ++ + R+ + + + Sbjct: 268 TPIEFFSQEVKDTYDAALQHKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFEVMAV 327 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453 + + + + +Q + + E + ++E +V Sbjct: 328 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 386 Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511 SIL + I + EGII + N A KL GY E++L + + Sbjct: 387 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 446 Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 + T + L QT TK + + +++ + L + Sbjct: 447 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 506 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+++ + + +L+ AK+ AE + KS+FLA +SHEIRTP+ ++G +++ N Sbjct: 507 LGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 566 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + R +Y + +L ++ND+LD SKIE+GK+ L P SL + + + + Sbjct: 567 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLV 622 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732 A +K + + ++P +L D +KQ+ +N++ NAI FT G I I + Sbjct: 623 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 682 Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E+ ++DTG+G+T + F Q +S R GTGLGL ++K +V+ G Sbjct: 683 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 742 Query: 791 KFYIFSTPAKGTLIEI 806 + + S G+ Sbjct: 743 EIGVESEFGCGSTFSF 758 Score = 44.2 bits (103), Expect = 0.090, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 17/152 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134 D G + + K +G A +++ ++ L + Sbjct: 402 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 461 Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 L+ + W + T V + L + + +GF G I Sbjct: 462 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGFLG--IAFDLTKQLKY 519 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + ++ ++ K + + Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTP 551 >gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 812 Score = 360 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 172/381 (45%), Gaps = 16/381 (4%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + E E +L +++ D + + + + N A +L GY + +++ K Sbjct: 288 EQSESLKIREAESARLARVVKHMRDAVVFTDLDSKVTWVNGAFERLTGYSLSEMIGKKPG 347 Query: 499 VFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553 L+ + E++ L KE + + I + L + Sbjct: 348 DVLQGVDTDKRTTRKIRELIDRREPGFF--ELLNYNKEGESYWIEIALTPLYSTHGQIEG 405 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + DI++ + + L AE + KS FLA +SHE+RTP+ I+G +++KN Sbjct: 406 FMAVERDITQRVELEESLKIKAVEAEAANIAKSQFLAAMSHELRTPMNGILGVGDLLKNT 465 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N EY + SG +L+++ND+LD SKIE+GK+ L L + V+ Sbjct: 466 TL----NEEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEFLLKDVVARLTR 521 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L + +K + + ++ + R ++AD + QI N+LSNA+ FT GG I +S Sbjct: 522 LYEPLCADKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSEGG-ITLSLDVV 580 Query: 733 SNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ + V DTG+G++ + PF Q + R GTGLGL + + +V A Sbjct: 581 EQSHRIELHIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGLSITRDLVKAMN 640 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S KG+ I+ P+ Sbjct: 641 GTVDLSSEVGKGSQFTIVVPV 661 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 6/139 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D + ++ + G +MIG + DV + D I +L+ R+ + + Sbjct: 317 TDLDSKVTWVNGAFERLTGYSLSEMIGKKPGDVLQGVDTDKRTTRKIRELIDRREPGFFE 376 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + EG + I++A P+YS + + GF + + K + Sbjct: 377 LLNYNKEGESY--WIEIALTPLYSTHGQIEGFM--AVERDITQRVELEESLKIKAVEAEA 432 Query: 207 LHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 433 ANIAKSQFLAAMSHELRTP 451 >gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39] Length = 959 Score = 360 bits (925), Expect = 5e-97, Method: Composition-based stats. Identities = 105/411 (25%), Positives = 178/411 (43%), Gaps = 24/411 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + ++ R + + + SI E ++GI +G +S N A++++ GY Sbjct: 536 VGEMFSNTIERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDS 595 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + L T Q + ++ + + + + Sbjct: 596 PEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAVF 655 Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + T+ DI+E K+ L AK+ AE + KS FLA +SHE+RTPL AIIG Sbjct: 656 DAIGELVCYEGTVEDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIG 715 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +SE++ + + I +G +L ++ND+LDISKIE+G+M+L E + Sbjct: 716 YSEILLEEAEELGYEDIVPD-LERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVS 774 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + Q ++ + +NI + AD+ V+QI LN+LSNA FT G +I Sbjct: 775 GLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTDG-KI 833 Query: 726 IISTTH--------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 I + S V +V DTG+GM+ + E+ +PF Q S R GTGLG Sbjct: 834 KIEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLG 893 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP----------LYDTSHPHD 818 L ++ G + ST +G+ +++ P + T P + Sbjct: 894 LAISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTRVKVKTSEAIATTQDPEE 944 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 45/355 (12%), Positives = 111/355 (31%), Gaps = 16/355 (4%) Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLS-- 304 L+ + + T +E ++ + Q Q + S E L Sbjct: 4 PLLQQQLQEIGFQMDTPPSDPKAWREFLKKVSSSYRAADQQRDLAAQTLTFSSEEMLEKY 63 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 R A + + + + GNL NP L + + Sbjct: 64 ERQRQQSEARLEAERDRLQAVIGSLGAGLCILDAQGNLLSMNPKAEQLLGWSESELAGQD 123 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRS-----DRTCIAASARLHTIQWNRENSLAMTFIPF 418 L AP L P L + ++ ++ + L +++I Sbjct: 124 LFK---LIAPHLQQFPQQFPSHLGQKCSPSPEQLLAPPKSKQDYLACRDGQVLPVSYILN 180 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + + + D + +++ + L + ++T GI ++R G + N Sbjct: 181 PIV-ENDAWVGTVLVFFDISDRQQAEQEAARSMSMLQATFDSTDAGILALDRYGQVCHFN 239 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEE 536 + +++ P + L + +L I+ L + + + K+ Sbjct: 240 QKFVQMWEVPESFLNPHQNRSTLAFVMRQLKNPPQFLKTIMQLSAQPYIPTYDVVEFKDG 299 Query: 537 KLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 ++ + K+ + DI+E K+ + L + + + ++ + F++ Sbjct: 300 RIFEVYSHPSKVGNKLVGRVWSFRDITERKRVEKALQNRVEFEQLITNLSTYFIS 354 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 7/141 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145 G + L + +G + + + L DVS L++ P + + + G Sbjct: 573 QTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISG 632 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++ ++ +GT + I A ++ E + G V +R + Sbjct: 633 FESQVYRQDGTT--IWISENARAVFDAIGELVCYEG--TVEDITEGKRAAEALERAKEAA 688 Query: 205 SHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 689 ETANRAKSTFLANMSHELRTP 709 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 34/147 (23%), Gaps = 6/147 (4%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + E + G ANP+ + Y S +D+ Sbjct: 545 ERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIAN-- 602 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L+ + + + V + ++ ++ + Sbjct: 603 LTDVSTQLYVKPTRRAEFVAAIAKSSVISGFE---SQVYRQDGTTIWISENARAVFDAIG 659 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM 452 E + G + + + +E Sbjct: 660 ELVCYEGTVEDITEGKRAAEALERAKE 686 >gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 785 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 101/416 (24%), Positives = 186/416 (44%), Gaps = 18/416 (4%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSD 463 + +A+ + + + G + ++ + + M +I+ + +D Sbjct: 221 DTTRQVALGNLTARADIGTGDELEHLGRSFNIMTEQLQQTQGDMSAAREYTDNIIRSMND 280 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 + +++ EGII N A L GY +++ L + + L+ + + Sbjct: 281 AMIVVSPEGIIDRVNTATLNLLGYDERELIGSNIDKILASDAATGEGAAPVPDLAGLIPR 340 Query: 524 TL--EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 + T ++ +L+ + + + DI+E KQ + L AK+ Sbjct: 341 GFINKVETFYRARDGRLIPVIFSASVMHGAGKSAQGIVCVALDITERKQAEEALRIAKEN 400 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS FLA +SHEIRTP+ ++G +++ + R + + A+ S + + Sbjct: 401 AEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRL----DENQLRLASMAHGSADKL 456 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L+I+ND+LD SKIE+G+ LH +L E V E + + A +K I + +++P Sbjct: 457 LEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSVPNT 516 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYE 752 + D ++Q+ +N++ NA+ FT GQI + + N ++ VRDTG G+ Sbjct: 517 VRGDGVRLRQVLINLVGNAVKFT-ENGQIFLGVSLMETTAENTQLRFEVRDTGTGIPLDA 575 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q NS R EGTGLGL +++ +V+A G + S P G+L Sbjct: 576 QPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGSLFWFTL 631 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 66/246 (26%), Gaps = 17/246 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRL-----CDVSDILHIDPNNHIGDLLKRQNTW 143 + G + ++ +G ++IG + D + P + L+ R Sbjct: 285 VSPEGIIDRVNTATLNLLGYDERELIGSNIDKILASDAATGEGAAPVPDLAGLIPRGFIN 344 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +T +G +P+ +A ++ + G + + + Sbjct: 345 KVETFYRARDGRL--IPVIFSASVMHGAGKSAQGI--VCVALDITERKQAEEALRIAKEN 400 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K + + P + + L + ++ + Sbjct: 401 AEAANRAKSQFLANMSHEIR-------TPMNGVLGMLDLLMDSRLDENQLRLASMAHGSA 453 Query: 264 S-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + DF I ++ L+ +E + + + ++ Sbjct: 454 DKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSV 513 Query: 323 PETVDK 328 P TV Sbjct: 514 PNTVRG 519 >gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1099 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 106/526 (20%), Positives = 219/526 (41%), Gaps = 34/526 (6%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 + R+ + E ++ I F G N F + Y + + + Sbjct: 352 AIEARDRQRSELALRQSEERFRAIFEQAAIGIFQTDATGKYIQVNQRFCQFSGYSADELL 411 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRE-NSLAMTFIP 417 L + + + L + + S Q + + +T Sbjct: 412 -------QLRMQDITHPVDLRRCLELRNALFSGELQSFSLEKRLRQKSGQWRWANVTISA 464 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG----- 472 + + FP G+ + + + + + + ++++ ++GI + G Sbjct: 465 VQHPDGFPC---TIGVIEDISERKQAEAQRQSADSFRRALIDRAAEGICMC--HGIEEFP 519 Query: 473 --IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKI 528 N+ + L GY +E+I R + L ++ ++ + + E Sbjct: 520 YVRFTVWNQRMVSLTGYTMEEINRLGWYQTLYPDSEIREAAIERMSRMRQGEDLMAEEWT 579 Query: 529 TLGSTKEEKLLSLRIIIKK-LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + E++++ + + + M DI++ K + + AK+ AE + KS Sbjct: 580 ITRADGEQRVVCISTSLIPGVEGDYHALAVMQDITQRKHTELAMQQAKEAAEAANQAKSA 639 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTPL AI+GF+++++ E + I+RSG +L ++ND+L++ Sbjct: 640 FLAHMSHELRTPLNAILGFAQLMERDTLLTTA---QKESLSIINRSGEHLLGLINDVLEM 696 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+G++ LH L + + ++ A K +++ + + ++P+ I++D ++Q Sbjct: 697 SKIEAGRIVLHKAQFDLHRLLQTLQEMFRVRATAKGLVLTMNLSPSLPQLIISDEGKLRQ 756 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIP 764 + +N+LSNA+ FT G I ++ + + + + +V DTG G+ E +PF Q Sbjct: 757 VLINLLSNAVKFTDVG-HITLTANYADDPDPRLWFQVEDTGRGIAAAEQHHLFEPFVQTT 815 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL ++ V G+ + S +G+ P+ Sbjct: 816 TGAN-AQEGTGLGLTISHQFVQLLGGELRVESEVNRGSTFSFDLPV 860 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 45/375 (12%), Positives = 97/375 (25%), Gaps = 30/375 (8%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + +IK +E L K +L E A + + Sbjct: 140 AVLDIKPMQPDPGRELILKIFAARAGAELERKYAEIALKESQAALLSRGQRLRRQQEALL 199 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + +N + + + S + + + Sbjct: 200 SLAQHQVLYNGDLNAALQLLSETAAQALDVERVSIWFYNPERSQIFLKDLYQLSRGEHSH 259 Query: 326 V-----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 D+ P F + A+ + + +DD + G+++++D P Sbjct: 260 SGELQSDRYPTYFAALEAEEVIAADQAQSDWRTREFLDDWLLPQGITSMMDVPI------ 313 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 RS + H F + E D Sbjct: 314 -------RSSGKTVGVICHEHVGPPRHWTIEEQNF--------ANCLAYMISLAIEARDR 358 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ + + +I E + GI + G + N+ + GY +++L+ Sbjct: 359 QRSELALRQSEERFRAIFEQAAIGIFQTDATGKYIQVNQRFCQFSGYSADELLQLRMQDI 418 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLT 557 L L Q+ K + + I + + Sbjct: 419 THPVDLRRCLE-LRNALFSGELQSFSLEKRLRQKSGQWRWANVTISAVQHPDGFPCTIGV 477 Query: 558 MHDISEWKQEKNKLS 572 + DISE KQ + + Sbjct: 478 IEDISERKQAEAQRQ 492 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 76/270 (28%), Gaps = 22/270 (8%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF----------TWNIDAH 92 P H + E+ NF + +S RF + DA Sbjct: 330 PPRHWTIEEQNFANCLAYMISLAIEARDRQRSELALRQSEERFRAIFEQAAIGIFQTDAT 389 Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLW 150 G ++++ + G A +++ +R+ D++ + + + + L ++ + L Sbjct: 390 GKYIQVNQRFCQFSGYSADELLQLRMQDITHPVDLRRCLELRNALFSGELQSFSLEKRLR 449 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 G + + ++A+ GF G++ A + D L + Sbjct: 450 QKSGQWRWANVTISAVQHPD------GFPCTIGVIEDISERKQAEAQRQSADSFRRALID 503 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + + RM + E YP E+++ Sbjct: 504 RAAEGICMCHGIEEFPYVRFTVWNQRMVSLTGYTMEEINRLGW--YQTLYPDSEIREAAI 561 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + ++ + Sbjct: 562 ERMSRMRQ-GEDLMAEEWTITRADGEQRVV 590 >gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 940 Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats. Identities = 127/743 (17%), Positives = 262/743 (35%), Gaps = 71/743 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142 + G ++ + + +G + + + D+S ++IDP + I L ++ Sbjct: 33 IFTSTPGGRFLSVNPAMARMLGYDSSHDLIDSITDISAQVYIDPLDRMEFIRLLEEQVEV 92 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + + +GT + + A + + + + +GF + A + + Sbjct: 93 FNHECRIRRRDGT--VLWVAQNARLVRNDKGKITHIQGF--ITDVSAKKQAEAELREKTE 148 Query: 203 KFSHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEK 258 + + + E S+ + + + H DD ++T Sbjct: 149 RLNSIAENMLDMVSITDLEGRFKYVGPSHAVLGYDLDYLPGRNVMEFVHPDDYKEVETSF 208 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L E + + + + + + + + E L + ++ Sbjct: 209 GEFLACREDGRSVEYRYRRADGEYVWLETFGKFILDQDGAAREILFSTRDVTERRQAEQA 268 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + V Y+ + +E+ L T + D Sbjct: 269 LRESETRVRTKLEAILE-----------------PYEDLGGLELGDILDTRTVQDFMDD- 310 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 L + RL + + F + Sbjct: 311 ----FYYLTNIGGAIVDLKGRLLAST--GWQEICVNFHRAHPDALANCRESDLMLSSGLT 364 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + K + + + + I + L + F + E++ + Sbjct: 365 PGQFKLYKCKNNMWDMAT-------PIVVGGHHLGNLYIGQ-----FVFDDEELDIET-- 410 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 I +L + L++ T+ + ++I L +S+ Sbjct: 411 --FRDQAGKYGFDQEAYIRALHKVRRLDRDTVNRAMQ-FYSRFAMLISSLSWSN--LELA 465 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 + E K + A+ + KS+FLA +SHEIRTP+ I+G +++++ P Sbjct: 466 RSVHEQKVA-------TQQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTELSP- 517 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 EY N S + + +++D+LD+S+IE+G+M + E V L + L + Sbjct: 518 ---EQQEYTNMGIVSASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVT 574 Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733 + EK I + + +P++ L D ++QI N++ NA+ FT G +I ++ Sbjct: 575 SREKDISLEFTQDPCLPQVLLGDEARLQQIVFNLVGNALKFTQEG-RISVNWHLQQRRGR 633 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + V+L V DTG+GMT+ L++ KPF Q N+ R +G GLGL + K +V+ G Sbjct: 634 DARVLLTVSDTGIGMTDDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLA 693 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + STP +G+ + PL P Sbjct: 694 VDSTPGQGSTFFVSLPLGMPEEP 716 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 84/269 (31%), Gaps = 12/269 (4%) Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 E + P+ F G NP+ + Y S D+ + ++ D + + Sbjct: 24 EILRDAPVGIFTSTPGGRFLSVNPAMARMLGYDSSHDL-----IDSITDISAQVYIDPLD 78 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + R + I+ L + N + G + + Sbjct: 79 RMEFIRLLEEQVEVFNHECRIRRRDGTVLWVAQNARLVRNDKGKITHIQGFITDVSAKKQ 138 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + ++ + +L SI E D ++I + EG + + GY ++ + + F+ Sbjct: 139 AEAELREKTERLNSIAENMLDMVSITDLEGRFKYVGPS-HAVLGYDLDYLPGRNVMEFVH 197 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTM 558 + + E L+ + + + L I+ + + + Sbjct: 198 PDDYKEVETSFGEFLACREDGR-SVEYRYRRADGEYVWLETFGKFILDQDGAAREILFST 256 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSD 587 D++E +Q + L ++ + + Sbjct: 257 RDVTERRQAEQALRESETRVRTKLEAILE 285 >gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1271 Score = 360 bits (924), Expect = 6e-97, Method: Composition-based stats. Identities = 108/533 (20%), Positives = 203/533 (38%), Gaps = 28/533 (5%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 + +++ + + E + L TV + G + Sbjct: 519 RLRERKEVEKTISLLNQELERKVNVRTAQLKESEVRFRTAFESTVHGM---LLIALSGEI 575 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 N SF + Y + + T+ D M Sbjct: 576 LQLNNSFAAMLGYDESELVG-----ETVYSITYQDDIKLTTEAMRSIVSGEQNHYDITKR 630 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + N + T + + + +++ + I E + Sbjct: 631 YVRKDG-NLVIATANAALIRDNKSNPIYIVANVVNITEAEHTRKERDK-------IFELS 682 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 D I I + +G I N A +L Y D++ F L + + + LD Sbjct: 683 RDIIGIADLDGNIHYLNSAFGELLSYSTADVINSNFRDILRPSDIEQLEIVFQSLQELD- 741 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 ++ ++ + + + + ++ D ++ K +N L K AE+ Sbjct: 742 -SLVDFESMHTLPDGSIKWISWSFTADRVNNRIYSIGRDATDRKVYENTLKDQKDKAEQA 800 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS+F+A +SHEIRTPL A+IGFSE++ + + + Y N I SG +L ++ Sbjct: 801 GRAKSEFMANISHEIRTPLNAVIGFSELLSARA----QDSKAASYINSIKTSGKALLTLI 856 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700 ND+LDISK+E+ P S+ + E + + I + A + P ++ D Sbjct: 857 NDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFIAADTPKTMMLD 916 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKA 756 + ++Q+ LN++ NA+ FT G ++ IS ++ + V+DTG+G+ E+E Sbjct: 917 ISRLRQVLLNLIGNAVKFTERG-EVSISVRCEAVNDERVDLYISVKDTGIGIPKEEMEDI 975 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + GTGLGL ++ +VD G+ + S G+ +I P Sbjct: 976 FQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTVILP 1028 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 70/670 (10%), Positives = 177/670 (26%), Gaps = 83/670 (12%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEIS 99 P S E N++ + E S + FV D +D ++ Sbjct: 92 FSIPPISKS-EVENYSTMSAEMESALMDMQIYEEFVEDTDN----IITRVDKDARFTYVN 146 Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDP-----NNHIGDLLKRQNTWYGKTTLWPIEG 154 G +IG D + + + N+ I + LKR +G Sbjct: 147 TACEGLYGVSRDVLIGQSAFDFTHVDDREITINAFNSWIKNKLKRT---SFVNRQILSDG 203 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + ++V + Y + E I A K+ + + + + Sbjct: 204 SVIHVLWTINL--HYGSSGELLYIN--SIAKDITDGYLAEAALKKSESSLRAILDSSQDI 259 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + I + S L + + + ++ + Sbjct: 260 VLLLDSDGTILDCNQQFCKEVEIDIASVLGCNLWNIRGMNTNGERRVIFDNVVRTGKPCR 319 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------ETVDK 328 F Y + E +++ + + ++ + + + Sbjct: 320 FEDY-GADNWYSVYIAPIALEDMEQKRFVAFAKNITYRKEAEQFARMNEHRHKSLAILGQ 378 Query: 329 CPIP----FFVYSHGNLFYANPS-------FLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 YS + S + + + L A + + Sbjct: 379 MYEADFDEILEYSLESSIEQTQSIGGYIVEYDASIGVSKLKAFKGHSNTEVTLCADQPLE 438 Query: 378 NNAIKPVM---------LYRSDRTCIAASAR----------LHTIQWNRENSLAMTF--- 415 + + L R+ I L + E L + Sbjct: 439 VSRFHDLYTVLRNKEPVLNNRQRSVIPMPDTKTAEYNENSMLVPLMAQGEIRLILAVYGK 498 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK------------------RKMEIEVMQLCSI 457 ++ + + + +++ ++ + Sbjct: 499 SRNYNLSEAIGLTHFMEGVWRLRERKEVEKTISLLNQELERKVNVRTAQLKESEVRFRTA 558 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E+T G+ +I G IL N + + + GY +++ + Q+ + + I+ Sbjct: 559 FESTVHGMLLIALSGEILQLNNSFAAMLGYDESELVGETVYSITYQDDIKLTTEAMRSIV 618 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573 S + + K+ L+ + + + +I+E + + + Sbjct: 619 SGEQNH-YDITKRYVRKDGNLVIATANAALIRDNKSNPIYIVANVVNITEAEHTRKERDK 677 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDR 632 ++ +D + H + + ++ +S + N F + P IE + + Sbjct: 678 I-FELSRDIIGIADLDGNI-HYLNSAFGELLSYSTADVINSNFRDILRPSDIEQLEIVFQ 735 Query: 633 SGNLVLDIVN 642 S + +V+ Sbjct: 736 SLQELDSLVD 745 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 9/137 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G + ++ + + +I D+ I+ + L+ ++ ++ Sbjct: 690 DLDGNIHYLNSAFGELLSYSTADVINSNFRDILRPSDIEQLEIVFQSLQELDSLVDFESM 749 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ ++ A R R + I K K Sbjct: 750 HTLPDGSIKWISWSFTA----DRVNN----RIYSIGRDATDRKVYENTLKDQKDKAEQAG 801 Query: 209 EIKKGHSSVEKEKYDIF 225 K + + Sbjct: 802 RAKSEFMANISHEIRTP 818 Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats. Identities = 33/352 (9%), Positives = 92/352 (26%), Gaps = 25/352 (7%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + +++ +G +++G + ++ I + + T + Sbjct: 573 GEILQLNNSFAAMLGYDESELVGETVYSITYQDDIKLTTEAMRSIVSGEQNHYDITKRYV 632 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK--RLDKKFSHLHEI 210 V A I + +V++ ++ + K L + + ++ Sbjct: 633 RKDGNLVIATANAALIRDNKSNPI-YIVANVVNITEAEHTRKERDKIFELSRDIIGIADL 691 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + ++ S + + L + +++ L +S + Sbjct: 692 DGNIHYLNSAFGELLSYSTADVINSNFRDI--LRPSDIEQLEIVFQSLQEL----DSLVD 745 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + + F + N++ + + ++ + Sbjct: 746 FESMHTLPDGSIKWISWSFTADRVNNRIYSIGRDATDRKVYENTLKDQKDKAEQ------ 799 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 G A F+ ++ + G S LL A A + S Sbjct: 800 -------AGR---AKSEFMANISHEIRTPLNAVIGFSELLSARAQDSKAASYINSIKTSG 849 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + I + P E + G E D ++ Sbjct: 850 KALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKL 901 >gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM B1551] Length = 590 Score = 360 bits (924), Expect = 6e-97, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 169/364 (46%), Gaps = 25/364 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NRA + F +D L + E Sbjct: 242 EMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFLYHLYYEVFEH---K 298 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + + +I ++ + +++ L E + + L HDI+E K Sbjct: 299 EIIKLVEKIFMTEV-KVRKQVVLPLNIERRYFDVYGAPIIGLNDEWKGIVLVFHDITELK 357 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE++TP+T+I GFSE + + G + +P+ + Sbjct: 358 KLEQV--------------RRDFVANVSHELKTPITSIKGFSETLLD---GAMEDPQLRQ 400 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + + I + ++ DLLD+SK+E L V L+ + E +++ A EK I Sbjct: 401 QFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEI 460 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + I D + + Q+ +N++ NA+ +T GG + +S E + + V+DT Sbjct: 461 TLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLE-EEEETITVHVQDT 519 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + E+ + + F ++ ++ GTGLGL + K +V+A+ G+ + S KGT Sbjct: 520 GIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTF 579 Query: 805 EIIF 808 + Sbjct: 580 SVKL 583 >gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231] gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231] Length = 831 Score = 360 bits (923), Expect = 6e-97, Method: Composition-based stats. Identities = 96/631 (15%), Positives = 206/631 (32%), Gaps = 22/631 (3%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 L + G ++ E+ + + P + + L Sbjct: 62 LTESVAAGVHAAELPFPDPQTRQEAVGVATDEETVLVLIGGKPCPEAVVEVRLLLPLLGA 121 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + ++ + ++ + +Q + Sbjct: 122 ALQGQGAVLVAAGHSRAARRAAAEAEALAGALDATRRELQQALHAVDQEL---------T 172 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365 E +L T+ G + N LT + S + Sbjct: 173 QRKLAEQALQEERDLLTVTLTSIGDAVITTDTEGRITSLNAMAESLTGWASAEAAGRPLD 232 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + + P + + + ++ + + + Sbjct: 233 AVFRIVNEQTRRT-VDNPATRTLREGVIVGLANHTVLVRKDG-TERPIDDSAAPIRDDQG 290 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKL 484 + + + + + R + ++ + +++E D I + + EG S N V ++ Sbjct: 291 QVLGCVLVFRDITERRKAEAALQENERRFRTLVEQVKDYAIFMTDAEGRATSWNEGVRRV 350 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G+ D L + + L E+ K+ Sbjct: 351 LGFEEADFLGQDIVPTIFTPEDVESGVPLRELEQAAATGKAGSDRWMRRKDGSRFFATGT 410 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L + + M D +E K+ +++L + + KS+FLA + HE+R PL Sbjct: 411 TAALHDKAGKLVNFMKVMRDQTEQKRLEDELRKTAADLSEANRRKSEFLATLGHELRNPL 470 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I E++K P R ++ +++DLLD+S+I GK+ L Sbjct: 471 APIRMGLELMKMAADSPAKMEEIRGMME---RQVLQMVRLIDDLLDVSRITRGKLQLRIC 527 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 V++ V A+ + + + +E + + + AD + Q+ N+L+N+ +TP Sbjct: 528 RVAVANVVQNAVEMARPFIDEADHQLTVAVPPQPIHLDADPNRLAQVFSNLLNNSAKYTP 587 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG I +S +V++ +RD G+G+ + F Q+ + G G+GL L Sbjct: 588 EGGHIWLSAE-RQGSDVVVTIRDNGIGIPADMQTSIFEMFTQVDRPLEQGYTGLGIGLTL 646 Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 K +V+ + G+ S +G+ E+ PL Sbjct: 647 VKQLVEMHGGRIDARSEGSGRGSAFEVRLPL 677 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 68/249 (27%), Gaps = 17/249 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDLLKRQNTW- 143 D G + ++ G + + G V++ +N L+ Sbjct: 202 TDTEGRITSLNAMAESLTGWASAEAAGRPLDAVFRIVNEQTRRTVDNPATRTLREGVIVG 261 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 T L +GT PID +A PI + G + A + ++ Sbjct: 262 LANHTVLVRKDGT--ERPIDDSAAPIRDDQGQVLGC--VLVFRDITERRKAEAALQENER 317 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------DDVLKT 256 +F L E K ++ + + + + + + D Sbjct: 318 RFRTLVEQVKDYAIFMTDAEGRATSWNEGVRRVLGFEEADFLGQDIVPTIFTPEDVESGV 377 Query: 257 EKYPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L + + + + + +++ L + + + ++ + Sbjct: 378 PLRELEQAAATGKAGSDRWMRRKDGSRFFATGTTAALHDKAGKLVNFMKVMRDQTEQKRL 437 Query: 316 DEGENLTPE 324 ++ T Sbjct: 438 EDELRKTAA 446 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 3/139 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWY 144 + DA G +E + + +G +G + + ++ + +L + T Sbjct: 331 IFMTDAEGRATSWNEGVRRVLGFEEADFLGQDIVPTIFTPEDVESGVPLRELEQAAATGK 390 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + W ++ + + F ++ ++ Sbjct: 391 AGSDRWMRRKDGSRFFATGTTAALHDKAGKLVNFMK--VMRDQTEQKRLEDELRKTAADL 448 Query: 205 SHLHEIKKGHSSVEKEKYD 223 S + K + + Sbjct: 449 SEANRRKSEFLATLGHELR 467 >gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis excentricus CB 48] Length = 864 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 146/669 (21%), Positives = 262/669 (39%), Gaps = 54/669 (8%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNK 239 G V N+P + L S E+ + + ++++ Sbjct: 193 GRVRAVARLNNPLRDAENTRDNQIVLINAAGDILSASDERLTGLNIRKALTVTPEQIRDN 252 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NN 295 +S ++ + E + + + Sbjct: 253 ANSARISQGTLEEKGFVRIAAVREGENGLTTLYVEPSNAAAARNWLTTATLFIGPLIIGA 312 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKY 354 + R + + ++ E V+ + + + + + ++ + Sbjct: 313 LFGMLLIVQSRRNSEAARQYEAKETRYRLAVEAARCGIWEWDLESDQVFMSEVTGVMFGW 372 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 +A LL K ++ R + + ++ + Sbjct: 373 GGS---GVATTNEVLLRIAPEHRETVRKALLNARGHGALD----VSFRVPGDNGRAIWID 425 Query: 415 FIPFEKANQFPEN-MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + P +G+ + + R + + + +L + + SD + +R G Sbjct: 426 ARGQATGPRGPAGFTRLSGVALDVSEERAAQSRAQRAEARLTGAINSVSDAFVLWDRRGR 485 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ++ N + F + +E+ + E + +E Sbjct: 486 LVMWNAVFGRTFSIDPRFLKAGTSRELIEKVMAIAIRR--QEPVIDGREGVVEAEL---- 539 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI---------------- 577 + + + + +T DI+ K ++ ++ Sbjct: 540 NDGRWIQISESRTL---EGGTVVTGADITAIKVQEEMSRRNEEQLQAMVDKLEQSRRIQT 596 Query: 578 ------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 AE+ + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY E Sbjct: 597 DLAKKYEMAKIRAEQANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKE 656 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I SG +L ++ND+LD+SKIE+GKM L FEPVS++E V + + LV+ A + + Sbjct: 657 YAGDILSSGQHLLALINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLK 716 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 +R +P I AD R++KQI LNIL+NAI FTPSGG I +S T + + L V DTG Sbjct: 717 MRVHL-PQLPDIQADYRALKQILLNILTNAIKFTPSGGTITVSAVPTDS-FMHLYVADTG 774 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++E+ +PF QI N EGTGLGL L K++++ + G+ + ST +GT + Sbjct: 775 IGIAPKDMERLARPFEQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVS 834 Query: 806 IIFPLYDTS 814 +I PL TS Sbjct: 835 VILPLTQTS 843 >gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797] Length = 1165 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 136/735 (18%), Positives = 252/735 (34%), Gaps = 66/735 (8%) Query: 124 ILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 I P N + + + +W K +G ++ + Y N+ R Sbjct: 280 PPDIRPQIQNAVKNAINAGQSWDLKLPFITAKGR--HIWVRAQGELEYQNNKPV---RLV 334 Query: 182 GIVHVNRVDNDPRAL-----------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 G + A +L+ EI + E Sbjct: 335 GAFQDITREKQLEAEFTLLQDHQFSTRAQLESVIRAATEISIIATDTEGLITLFSPGAER 394 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI------------ 278 + + T + H+ L+ L + S + E F Sbjct: 395 LLGYSAEEMIGIKTLLHFHQTSELEQRSRELTDTLGSKVEGFEIFFMPARDGVCDKHEWT 454 Query: 279 ----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCP 330 + + + ++ + YL + ++ + E +D P Sbjct: 455 YICKDGTERIVELTVTVIRGKQNQIDGYLGIAIDVTQKKIQEQQLFESHEKIKHLIDALP 514 Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G + Y N + + + G + D+ S + + + Sbjct: 515 AAAYTCDNTGLITYYNQAAAEFWGCEPELNSPDYRFCGSVKMFDSEGNSLAHEDCWMSVA 574 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 +R + I+ N N + + + + D + + Sbjct: 575 LKNREIYHCKEIV--IECENGNRKTALAHVSPITNFEGDMIGAINVVVDISDRIALENSL 632 Query: 448 EIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +L IL+ +A G+I N K+ GY E+ + + + Sbjct: 633 RETTARLELCLKILDQ-HAIVAETELNGVIRHVNDMFCKVSGYEREETIGQTHRIVNSGL 691 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 P + + +S + K +L L I + Y +D Sbjct: 692 HPKEFWQNVFKTIST--VGMWQGEICNRRKNGELYWLDTTIAAMKDGEGKATGYLAIRND 749 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E + + A S KS+FLA +SHEIRTPLTAI+GF+E+++N Sbjct: 750 ITELRLAQE-------AALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASSA 802 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I +GN +L ++ND+LD+SKIE+GK+ + L + SL++ A Sbjct: 803 GKREQAVKTIQEAGNHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPAI 862 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK + + T +P I D ++QI +N++ NA+ FT G +I I E Sbjct: 863 EKGVELVTRIETPLPDLIETDSTRLRQILMNLVGNAVKFTDKG-RIQIKVKFLEENESRF 921 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IF 795 + + D+G GM++ + K F Q S + GTGLGL +++ + G + Sbjct: 922 LKFEIEDSGPGMSDRQAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAW 981 Query: 796 STPAKGTLIEIIFPL 810 + P KGT ++ P+ Sbjct: 982 TEPGKGTCFRVVLPV 996 Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 44/408 (10%), Positives = 101/408 (24%), Gaps = 45/408 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNNHIG 134 D G + S + +G A +MIG R +++D L Sbjct: 379 TDTEGLITLFSPGAERLLGYSAEEMIGIKTLLHFHQTSELEQRSRELTDTLGSKVEGFEI 438 Query: 135 DLLKRQNTWYG--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + ++ + T +GT ++L I + + G+ G I Sbjct: 439 FFMPARDGVCDKHEWTYICKDGT--ERIVELTVTVIRGKQNQIDGYLGIAI--DVTQKKI 494 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTE 245 +K HL + + I P L + + Sbjct: 495 QEQQLFESHEKIKHLIDALPAAAYTCDNTGLITYYNQAAAEFWGCEPELNSPDYRFCGSV 554 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLP----EQEDFHTINLNQYTKKQYFGTL----QNNSK 297 + + ++ + ++ N N+ T + + + Sbjct: 555 KMFDSEGNSLAHEDCWMSVALKNREIYHCKEIVIECENGNRKTALAHVSPITNFEGDMIG 614 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTP---ETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 + + +L E + +D+ I +G + + N F ++ Y Sbjct: 615 AINVVVDISDRIALENSLRETTARLELCLKILDQHAIVAETELNGVIRHVNDMFCKVSGY 674 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + I + + L + V S + + Sbjct: 675 EREETIGQ----THRIVNSGLHPKEFWQNVFKTISTVGMWQGEICN---RRKNGELYWLD 727 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + I + + R+ + L S Sbjct: 728 TTIAAMKDGEGKATGYLAIRNDITELRLAQEAALAASHSKSEFLANMS 775 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 28/262 (10%), Positives = 72/262 (27%), Gaps = 14/262 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146 + +G ++ +++ K G + IG V+ LH ++ + W G+ Sbjct: 654 ETELNGVIRHVNDMFCKVSGYEREETIGQTHRIVNSGLHPKEFWQNVFKTISTVGMWQGE 713 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-----LD 201 G ++ +AA + + +G+ I + + + Sbjct: 714 ICNRRKNGELYWLDTTIAA--MKDGEGKATGY--LAIRNDITELRLAQEAALAASHSKSE 769 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + HEI+ +++ + + + + + + + + L Sbjct: 770 FLANMSHEIRTPLTAILGFAELLRNDHEFASSAGKREQAVKTIQEAGNHLLTVINDILDL 829 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E + E T L+ + E L R L + Sbjct: 830 SKIEA---GKVEIEKTSTQLFNILDHIESLLRPPAIEKGVELVTRIETPLPDLIETDSTR 886 Query: 322 TPETV-DKCPIPFFVYSHGNLF 342 + + + G + Sbjct: 887 LRQILMNLVGNAVKFTDKGRIQ 908 >gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 364 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 104/370 (28%), Positives = 176/370 (47%), Gaps = 12/370 (3%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + S++EA+ D + I+ EG I N A + G P E ++ F+ + + + Sbjct: 3 KQASQYARSLIEASLDPLVTISGEGKITDVNEASVQATGVPRERLIGTVFSDYFTEPDKA 62 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 ++ S + T + + K D++E K Sbjct: 63 --REGYQKVFSEGFVRDYALAIRHITNRVTDVLYNASVYKDDKGRVLGVFAAARDVTERK 120 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L ++ S KS+FLA +SHE+RTPL IIGF+E + + + G L NP+ E Sbjct: 121 RFEQSL-------QEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTL-NPKQKE 172 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I SG +L ++ND+LD++K+E+GKM+L L +A+ E ++ + A +K I Sbjct: 173 YLGDILNSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKHIH 232 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 +R + A + + D + KQ+ N+LSN I FT GG + I T L V+DTG Sbjct: 233 VRLTVAPELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKDTG 292 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ ++++ + F Q+ + R EGTGLGL L + +V+ G + S G+ Sbjct: 293 IGIKPEDIQRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGSTFS 352 Query: 806 IIFPLYDTSH 815 ++ PL Sbjct: 353 VVLPLVSEEA 362 Score = 44.2 bits (103), Expect = 0.099, Method: Composition-based stats. Identities = 14/129 (10%), Positives = 26/129 (20%), Gaps = 5/129 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I G + +++E + G ++IG D D + + Sbjct: 23 ISGEGKITDVNEASVQATGVPRERLIGTVFSDYFTE--PDKAREGYQKVFSEGFVRDYAL 80 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 TN + A G F + + S Sbjct: 81 AIRHI-TNRVTDVLYNASVYKDDKGRVLGV--FAAARDVTERKRFEQSLQEASRMKSEFL 137 Query: 209 EIKKGHSSV 217 Sbjct: 138 ANMSHELRT 146 >gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. MED193] Length = 753 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 97/413 (23%), Positives = 184/413 (44%), Gaps = 17/413 (4%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 +TF+ + + Q + E ++E +L + +D + Sbjct: 196 GALIWHLTFVVRSFSRIRSIMLTQALQQQELEGAYQRLLSQQVEAKRLALVARHANDSVL 255 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTL 525 +I++ + N A +++ GY E+I + L P L +++ RQ Sbjct: 256 LIDQNNKVQWVNEAFTRITGYSFEEIQGREPGELLNH--PQTNQDTLDKLIEGRRARQPF 313 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 L K+ + L + + Y D++ KQ +L A+ AE+ Sbjct: 314 RLEILNRHKDGHDVWLETNQVPILGNQGGEMSYIAIERDMTAAKQNAQQLEEARLAAEEG 373 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KSDFLA +SHEIRTP+ +IG +++++ + Y N I S +L ++ Sbjct: 374 GRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDL----DGDQRLYTNTILSSAKTLLALI 429 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD+SK+++G+++L+ L + + E I L+ A K + + ++PR ++ D Sbjct: 430 NDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLTQAEAKGLTLEVERDVDLPRYLVGD 489 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKA 756 ++QI N++ NAI FT G ++ +S + V+L + DTG+G+ L Sbjct: 490 DHRLRQILNNLVGNAIKFTEKG-RVKVSVEMEPAQDGGVLLNCAIIDTGIGIPKDMLTGI 548 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + R G+GLGL +++ + +A G+ + S G+ ++ P Sbjct: 549 FERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRITVTSEIGSGSCFTLVLP 601 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 12/139 (8%), Positives = 39/139 (28%), Gaps = 6/139 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGK 146 ID + ++ ++E + G ++ G ++ + D + + + + + + + Sbjct: 257 IDQNNKVQWVNEAFTRITGYSFEEIQGREPGELLNHPQTNQDTLDKLIEGRRARQPFRLE 316 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + V ++ +PI + I + Sbjct: 317 ILNRHKDGHD--VWLETNQVPILGNQGGEMSY--IAIERDMTAAKQNAQQLEEARLAAEE 372 Query: 207 LHEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 373 GGRAKSDFLATMSHEIRTP 391 >gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp. natto BEST195] Length = 579 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 171/372 (45%), Gaps = 23/372 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 E + + +I + ++ E + + + P L Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 HD++E K+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ + I + + +V DLLD+SKIE L E + + E +L++ Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLK 440 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK I + + + + D +KQ+ LN+++NA+ +TP GG + I+ + Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKD- 499 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559 Query: 797 TPAKGTLIEIIF 808 P +GT+ + Sbjct: 560 EPGRGTVFTVTL 571 >gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [uncultured marine microorganism HF4000_APKG2J17] Length = 669 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 134/637 (21%), Positives = 257/637 (40%), Gaps = 23/637 (3%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEY 246 RV+ R L + D+ S + I + ++ K+ + FS + +++ Sbjct: 33 RVEERTRELSESEDRIRSIMENIVEAVITIGKDGAIETFSPAAEEMFCYAASEILGENVS 92 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPE-------QEDFHTINLNQYTKKQYFGTLQNNSKE- 298 + + + + + + + ++ + Sbjct: 93 ILADKPERSEHDQYIENYHRTGKGKIIDVGFREVRGRRKDGTIFPAELAINEIRGGRRRK 152 Query: 299 -SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 E E +D P+ + G AN + + Sbjct: 153 FVGTLRDVTERKRAEKTLQESEARFRAVIDNSPMSILLKDCDGKYLMANREWHEWCNPEG 212 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + + +A L + A R H + Sbjct: 213 REIVGKT-------VDDFYPEEHAKAVKALDKEVLETGAPVVREHRTPRADGTEITTVLY 265 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 F + G + + + +++ + GI++ +R+G L Sbjct: 266 KFPVIGADGSIIGIGGTNVDITARVQAEEARREVESRFRTVVNSAPMGISLKDRDGKFLL 325 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N+ +I K F + + +I E I L Sbjct: 326 VNKTFGTWMDADPAEIEGKTFHELFAEKQAGEIESLDRKIFETGEESVDEAIRLFQDGVT 385 Query: 537 KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + + + M DI++ KQ + L A + AE + K++FLA +S Sbjct: 386 RTIFTHKSPVR-SATGGIVAVSTIMIDITDRKQAEESLRKAMERAEFANRAKAEFLAHMS 444 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL AI+G+S+++K+Q FGPLGN +Y +Y I +G +L I++D+LD+SK+E+G Sbjct: 445 HELRTPLNAILGYSDILKSQVFGPLGNEKYSDYVENISAAGGHLLGILSDILDVSKVEAG 504 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 ++++ + + A+ E ++ A+ ++ + + A ++PR+ AD R ++QI LN+LS Sbjct: 505 ELDIEDSEIDIAAAIKECKIMMLERADIAKVSLASLVAGDLPRLRADRRRLRQILLNLLS 564 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GE 772 NA+ F+ G++ I+ + +++RV DTG+G+ + K ++PFGQ+ S + GE Sbjct: 565 NAVKFSHEKGKVSIAAETDAAGAIVIRVADTGIGIAPENMGKILQPFGQVKESYVGKPGE 624 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GLGL L +++D + G I STP +GT + IIFP Sbjct: 625 GSGLGLSLVNSLMDLHGGTLDIDSTPGEGTTMNIIFP 661 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 68/162 (41%), Gaps = 7/162 (4%) Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + ++ R+ +R ++ ++ SI+E + + I ++G I + + A + Sbjct: 18 QAESELREARDGLEQRVEERTRELSESEDRIRSIMENIVEAVITIGKDGAIETFSPAAEE 77 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLS 540 +F Y +IL + ++ ++ S + Y+ + ++ + G K+ + Sbjct: 78 MFCYAASEILGENVSILADKPERSEHDQYIENYHRTGKGKIIDVGFREVRGRRKDGTIFP 137 Query: 541 LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + I ++ + T+ D++E K+ + L ++ Sbjct: 138 AELAINEIRGGRRRKFVGTLRDVTERKRAEKTLQESEARFRA 179 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 45/434 (10%), Positives = 108/434 (24%), Gaps = 28/434 (6%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 E K E +S + Q T L + + V I G Sbjct: 8 ELNKEIIERQQAESELREARDGLEQRVEERTRELSESEDRIRSIMENIVEAVITIGKDGA 67 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ------NTWYGKTT 148 ++ S + A +++G + ++D ++ + R + + + Sbjct: 68 IETFSPAAEEMFCYAASEILGENVSILADKPERSEHDQYIENYHRTGKGKIIDVGFREVR 127 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT P +LA I R + G + + + +F + Sbjct: 128 GRRKDGTIF--PAELAINEIRGGRRR----KFVGTLRDVTERKRAEKTLQESEARFRAVI 181 Query: 209 EIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ ++ T + ++ K K E Sbjct: 182 DNSPMSILLKDCDGKYLMANREWHEWCNPEGREIVGKTVDDFYPEEHAKAVKALDKEVLE 241 Query: 267 SSLPEQEDFHTINLNQ------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + P + T + K G + + E E+ Sbjct: 242 TGAPVVREHRTPRADGTEITTVLYKFPVIGADGSIIGIGGTNVDITARVQAEEARREVES 301 Query: 321 LTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V+ P+ G N +F + L + + Sbjct: 302 RFRTVVNSAPMGISLKDRDGKFLLVNKTFGTWMDADPAEI--EGKTFHELFAEKQAGEIE 359 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 ++ + + + A RL + + + + + I + D Sbjct: 360 SLDRKIFETGEESVDEA-IRLF----QDGVTRTIFTHKSPVRSATGGIVAVSTIMIDITD 414 Query: 440 TRINKRKMEIEVMQ 453 + + + + + Sbjct: 415 RKQAEESLRKAMER 428 Score = 44.2 bits (103), Expect = 0.079, Method: Composition-based stats. Identities = 9/137 (6%), Positives = 30/137 (21%), Gaps = 5/137 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTT 148 D G +++ + ++ G ++ + + + + Sbjct: 318 DRDGKFLLVNKTFGTWMDADPAEIEGKTFHELFAEKQAGEIESLDRKIFETGEESVDEAI 377 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G I P+ S I ++ ++ + Sbjct: 378 RLFQDGVTR--TIFTHKSPVRSATGGIVAVSTIMI--DITDRKQAEESLRKAMERAEFAN 433 Query: 209 EIKKGHSSVEKEKYDIF 225 K + + Sbjct: 434 RAKAEFLAHMSHELRTP 450 >gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein [Hylemonella gracilis ATCC 19624] gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein [Hylemonella gracilis ATCC 19624] Length = 1345 Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats. Identities = 120/668 (17%), Positives = 224/668 (33%), Gaps = 34/668 (5%) Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 GF F V+ V RL ++ + + + + Sbjct: 190 GFLFFLPVYSEDVRAKAPQDRLRLAIGLAYTPLVIGEVVFQMDLPWPQLAVNLYDAEEQG 249 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ---EDFHTINLNQYTKKQYFGTLQ 293 + + T PL L E F + + Sbjct: 250 GPRRFFSSSALDAPAAEGLTRTVPLELYGRRWLVEVNATPVFIQAMQLNSPRYVVGLMVG 309 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 ++ + + +D G + N + + Sbjct: 310 ASALVALLLYVSLVSAQRRRQALIEDARLAAILDGTSDAIIGKDLHGRVTSWNRAAAEIF 369 Query: 353 KYKSVDDIE-----------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y S + + ++L + A R + T I Sbjct: 370 GYASWEAVGKTLSELIVPADRQAEELSILARIGRGETVAPIATQRLRRNGTLIDVMVTAS 429 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEA 460 ++ + + ++ + + + ++ L S+++A Sbjct: 430 PVRDADGQVVGAASTLHDMTDELIARKSMLELNASLEEQVKERTARLAASERFLHSLIDA 489 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 ++ + + +NR K FG E++ + + + Y+ L Sbjct: 490 LPGLVSYWDTDMRCRYSNRTYQKWFGRSPEEMNGISRQELMGEELFRLNEPYIQAALR-G 548 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKI 577 Q +E+ + K ++ + Y + D++ KQ + L AK+ Sbjct: 549 EPQVMERAVTL--PDGKTINTLANFLPVFEEGVVCGYIVVSTDVTVLKQAEEALVKAKQK 606 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KSDFLA +SHEIRTP+ AI+G +++ Q P E I +G + Sbjct: 607 AEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQSLSPTS----REMVQKIHAAGKTL 662 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPR 696 L I+ND+LD SKIE+ M + P L + + S++ K + + + Sbjct: 663 LTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLGSKPLELVVGPPPDGANY 722 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEV--ILRVRDTGVGMTNY 751 ++ D + Q+ +N+ SNAI FT G ++ + T N V VRDTG+G+ Sbjct: 723 LIGDRLRLGQVLVNLASNAIKFTGQG-EVEVRVDRLPDTGNGRVMLRFSVRDTGIGIAPD 781 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + E F Q S GTGLGL +++ +V G+ + S P +G+ P + Sbjct: 782 KQEMIFHAFSQADTSTTRSFGGTGLGLAISRHLVALMGGRLQVHSAPGQGSNFHFELP-F 840 Query: 812 DTSHPHDC 819 + S+P D Sbjct: 841 ELSNPMDS 848 Score = 105 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 55/429 (12%), Positives = 129/429 (30%), Gaps = 41/429 (9%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 EF G GFG + RV A RL + K ++ ++ I + Sbjct: 83 RDIALEFPGSHGFGFIR--RVPRANEAAFLRLARSEHGPDFQIKELAAHSDDRLVIQYIE 140 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + + + ++L + + Sbjct: 141 PMAQNRAALGLDIG-------SEGRRRLAAVEAMRENRATLSQPLTLVQAAGKLDQGFLF 193 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 F + + + ++ L+ + E V + +P + Sbjct: 194 FLPVYSEDVRAKAP---QDRLRLAIGLAYTPLVIGEVVFQMDLP---------------W 235 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWN 406 L ++ D E GG + L A + + Sbjct: 236 PQL--AVNLYDAEEQGGPRRFFSSSALDAPAAEGLTRTVPLELYGRRWLVEVNATPVFI- 292 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ + + + + + + +R+ IE +L +IL+ TSD I Sbjct: 293 --QAMQLNSPRYVVGLMVGASALVALLLYVSLVSAQRRRQALIEDARLAAILDGTSDAII 350 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + G + S NRA +++FGY + + K + + L+ + + +T+ Sbjct: 351 GKDLHGRVTSWNRAAAEIFGYASWEAVGKTLSELIVPADRQA--EELSILARIGRGETVA 408 Query: 527 KITLGS-TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581 I + L+ + + + + + T+HD+++ + + E++ Sbjct: 409 PIATQRLRRNGTLIDVMVTASPVRDADGQVVGAASTLHDMTDELIARKSMLELNASLEEQ 468 Query: 582 SSHKSDFLA 590 ++ LA Sbjct: 469 VKERTARLA 477 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 28/226 (12%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148 D HG + + + G +++ +G L ++ I + R T T Sbjct: 353 DLHGRVTSWNRAAAEIFGYASWEAVGKTLSELIVPADRQAEELSILARIGRGETVAPIAT 412 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD------------------ 190 L + + + A P+ + + G +H + Sbjct: 413 QRLRRNGTL-IDVMVTASPVRDADGQVVGAA--STLHDMTDELIARKSMLELNASLEEQV 469 Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + A ++ L + G S R K + + Sbjct: 470 KERTARLAASERFLHSLIDALPGLVSYWDTDMRCRYSN------RTYQKWFGRSPEEMNG 523 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + L E + + + T+ + Sbjct: 524 ISRQELMGEELFRLNEPYIQAALRGEPQVMERAVTLPDGKTINTLA 569 Score = 44.6 bits (104), Expect = 0.063, Method: Composition-based stats. Identities = 24/349 (6%), Positives = 72/349 (20%), Gaps = 49/349 (14%) Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRN----------REFSGFRGFGIV---------- 184 G T P+E +++ A P++ + G + Sbjct: 267 GLTRTVPLELYGRRWLVEVNATPVFIQAMQLNSPRYVVGLMVGASALVALLLYVSLVSAQ 326 Query: 185 --HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 +++ A ++ +S + +IF S + +++ Sbjct: 327 RRRQALIEDARLAAILDGTSDAIIGKDLHGRVTSWNRAAAEIFGYASWEAVGKTLSELIV 386 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQE------------DFHTINLNQYTKKQYFG 290 + A + +L + ++ + + Sbjct: 387 PADRQAEELSILARIGRGETVAPIATQRLRRNGTLIDVMVTASPVRDADGQVVGAASTLH 446 Query: 291 TLQNNSKESFEYLS-----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYA 344 + + L +A E +D P + Y+ Sbjct: 447 DMTDELIARKSMLELNASLEEQVKERTARLAASERFLHSLIDALPGLVSYWDTDMRCRYS 506 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N ++ + L+ N L + Sbjct: 507 NRTYQKWFGRSPEEM--NGISRQELMGEELFRLNEPYIQAALR---GEPQVME---RAVT 558 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 ++ + + + + + + + Sbjct: 559 LPDGKTINTLANFLPVF-EEGVVCGYIVVSTDVTVLKQAEEALVKAKQK 606 >gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae] gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4] Length = 1268 Score = 360 bits (923), Expect = 8e-97, Method: Composition-based stats. Identities = 126/676 (18%), Positives = 238/676 (35%), Gaps = 46/676 (6%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A REF G RGFG++ + N A R+ + + + + + + Sbjct: 96 AYTQARDYKREFPGARGFGLI-IKVEPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 154 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 I + + LT+ + + E L Sbjct: 155 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLILM 214 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + Q++ + L N +V F+ Sbjct: 215 PVYKTTTVPQDSRQRLEHLFGWSYATILI-------NDVLNSVAGLENDVFLQISDITEQ 267 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 F + D ++ + R+ + + + Sbjct: 268 TPIEFFSQEVKDTYDAALQQKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFEVMAV 327 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453 + + + + +Q + + E + ++E +V Sbjct: 328 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 386 Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511 SIL + I + EGII + N A KL GY E++L + + Sbjct: 387 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 446 Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 + T + L QT TK + + +++ + L + Sbjct: 447 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 506 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+++ + + +L+ AK+ AE + KS+FLA +SHEIRTP+ ++G +++ N Sbjct: 507 LSIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 566 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + R +Y + +L ++ND+LD SKIE+GK+ L P SL + + + + Sbjct: 567 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLV 622 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732 A +K + + ++P +L D +KQ+ +N++ NAI FT G I I + Sbjct: 623 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 682 Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E+ ++DTG+G+T + F Q +S R GTGLGL ++K +V+ G Sbjct: 683 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 742 Query: 791 KFYIFSTPAKGTLIEI 806 + + S G+ Sbjct: 743 EIGVESEFGCGSTFSF 758 Score = 43.5 bits (101), Expect = 0.15, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 17/152 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134 D G + + K +G A +++ ++ L + Sbjct: 402 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 461 Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 L+ + W + T V + L + + +GF I Sbjct: 462 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF--LSIAFDLTKQLKY 519 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 A + ++ ++ K + + Sbjct: 520 EAELAQAKEQAESANKAKSEFLANMSHEIRTP 551 >gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 1104 Score = 360 bits (923), Expect = 8e-97, Method: Composition-based stats. Identities = 108/532 (20%), Positives = 212/532 (39%), Gaps = 25/532 (4%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-----YSHGNLFYANPSFL 349 + LS + ++ + + G Y +PS Sbjct: 576 EYEGKPAILSIARDITERKKIEKALKENEKLYRRITNNMLDLVSQTDEKGVFEYVSPSHE 635 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + YK + + + + + + T H Q Sbjct: 636 YILGYKPH-YLVGKNVFDFVHPEDRNKLKHLFYKCINNQKSATV------EHRYQHADGY 688 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 L + + ++ ++ + + + ++ + +I E T AI + Sbjct: 689 YLWLETVGNVVYDEDENDVKAIFGTRNVTERKKTEIALKESEKRYRTIFETTGSATAIAD 748 Query: 470 REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 L NR KL GY E+I ++ +T F+ + + ++L+ + Sbjct: 749 ENSTFLLVNREFEKLSGYSKEEIEKRKNWTDFIVEEDLPYLRENYYKLLANSTSVPRKYE 808 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KKIAEKE 581 + + + + +P T+ DI+E KQ + L + + Sbjct: 809 FRFIDRNNNQKYISMAVNSIPERKIAIATLLDITERKQSEETLRIYSEKLSKTNEELREL 868 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 K +F++ +SHE+RTP+T+I GFSE+I N++ G L N + E + I +S + + ++ Sbjct: 869 DKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTL-NEKQKEGMDSIVKSCDRLRWLI 927 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 LL ++K+++ K+ FEPV ++ + +S + L EK I I N+P + D Sbjct: 928 ESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNGDK 987 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAM 757 ++Q+ ++++ NA FT SGG+I I + + V + V+D G+G+ + Sbjct: 988 DYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPDIF 1047 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K F QI S + EGTGLG+ L +++ + G ++ S GT + + P Sbjct: 1048 KLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAGTDVHVKLP 1099 Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats. Identities = 59/554 (10%), Positives = 147/554 (26%), Gaps = 76/554 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + ++ + + +G K++G + D+ + + + L + + Sbjct: 194 LDCNQNITLVNNKGCEILGYNKDKIVGSNIFDIIPERYKNDIKSVSGKLLNEGIQTAQRF 253 Query: 149 LWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGFG------------------IVHVNR- 188 PI GT I + +N +G G ++ R Sbjct: 254 ENPILTGTGEERIISWHNTVLKDQNGNITGTLSSGIDITERKLAEEKQDYLNQVLRAIRN 313 Query: 189 ------VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI---------FSQQSPPPH 233 +ND L ++ + ++ E + Sbjct: 314 VNQLITHENDRFQLIQKSCELLVETRGYHNAWIALMDENGGGGFNNIVQAGMGAEFAYIK 373 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE----QEDFHTINLNQYTKKQYF 289 ++K+ A K P+ LP+ + N T Sbjct: 374 DKLKDGGLIDCVQKALNQSDTIVVKNPVSACVNCPLPDVHKGNNLTRKLEYNNRTYGILS 433 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAY------------------FDEGENLTPETVDKCPI 331 T+ + + + L + + + + + Sbjct: 434 VTVPSEYGKDNDELDLFDELTNDLSYALYNLEIEDEKIKAYNKVQQSLKQYQDIFNGMND 493 Query: 332 PFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 FV+ GN N + Y + + G+ + IK + Sbjct: 494 AAFVHDLEGNFLDVNDVAVQRLGYSREELLAMGPKGID------DETSKIKIKNRINSIL 547 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 D A A + + + P I + + + ++ ++ Sbjct: 548 DDGYFAFEA--SHVTKTGKKIPVAINSSLVEYEGKP---AILSIARDITERKKIEKALKE 602 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 I D ++ + +G+ + + + GY ++ K F+ + + Sbjct: 603 NEKLYRRITNNMLDLVSQTDEKGVFEYVSPSHEYILGYKPHYLVGKNVFDFVHPEDRNKL 662 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTM--HDISEWK 565 H + ++ T+E + L L + + +++E K Sbjct: 663 KHLFYKCINNQKSATVEH--RYQHADGYYLWLETVGNVVYDEDENDVKAIFGTRNVTERK 720 Query: 566 QEKNKLSHAKKIAE 579 + + L ++K Sbjct: 721 KTEIALKESEKRYR 734 Score = 77.4 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 33/287 (11%), Positives = 85/287 (29%), Gaps = 18/287 (6%) Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLLDAP 373 D P + + + N + + +I + Sbjct: 40 FDTIFDAIPDVIGIQNTDHEIICYNKAGYKFLNVSPEEVKGKKCFEIIGRQSPCDICATK 99 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + V Y + R + +Q + + + Sbjct: 100 NVYKTKQPSQVQKYIESMG-VWLDVRAYPVQDENGELTQIIEHLRDITTEKEMEKELEKS 158 Query: 434 EPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 E + +++ E + L+ + I ++ I N ++ GY + I Sbjct: 159 HIELEKRIEERTEQLKQEKDLMKKYLDVSGTIILALDCNQNITLVNNKGCEILGYNKDKI 218 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + + + + + ++L+ ++ Q E L T EE+++S + K Sbjct: 219 VGSNIFDIIPERYKNDIKSVSGKLLNEGIQTAQRFENPILTGTGEERIISWHNTVLKDQN 278 Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + DI+E K + K + ++ + + + ++HE Sbjct: 279 GNITGTLSSGIDITERKLAEEKQDYLNQVL-RAIRNVNQL---ITHE 321 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 23/199 (11%) Query: 422 NQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ ++ E D +I K++ + Q I +D + + EG L N Sbjct: 451 DELTNDLSYALYNLEIEDEKIKAYNKVQQSLKQYQDIFNGMNDAAFVHDLEGNFLDVNDV 510 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + GY E++L ++ + + + + IL TK K + Sbjct: 511 AVQRLGYSREELLAMGPKGIDDETSKIKIKNRINSILDDG---YFAFEASHVTKTGKKIP 567 Query: 541 LRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV------ 592 + I + + DI+E K+ + L +K+ + +++ D +++ Sbjct: 568 VAINSSLVEYEGKPAILSIARDITERKKIEKALKENEKLYRRITNNMLDLVSQTDEKGVF 627 Query: 593 -----SHEIRTPLTAIIGF 606 SHE I+G+ Sbjct: 628 EYVSPSHEY------ILGY 640 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 37/376 (9%), Positives = 94/376 (25%), Gaps = 27/376 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G ++++ + +G +++ M + + I N I +L + + + Sbjct: 499 DLEGNFLDVNDVAVQRLGYSREELLAMGPKGIDDETSKIKIKNRINSILDDG-YFAFEAS 557 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207 G +P+ + + + E+ G I K +K + + Sbjct: 558 HVTKTG--KKIPVAINSSLV-----EYEGKPAILSIARDITERKKIEKALKENEKLYRRI 610 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLT 263 S EK + V + H +D + Sbjct: 611 TNNMLDLVSQTDEKGVFEYVSPSHEYILGYKPHYLVGKNVFDFVHPEDRNKLKHLFYKCI 670 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGE 319 + + S + + + + + + + F + E E Sbjct: 671 NNQKSATVEHRYQHADGYYLWLETVGNVVYDEDENDVKAIFGTRNVTERKKTEIALKESE 730 Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + N F L+ Y + + + L Sbjct: 731 KRYRTIFETTGSATAIADENSTFLLVNREFEKLSGYSKEEIEKRKNWTD-FIVEEDLPYL 789 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 +L S R + N + ++M + + Sbjct: 790 RENYYKLLANSTSVPRKYEFR-FIDRNNNQKYISMAVNSIPERKIA------IATLLDIT 842 Query: 439 DTRINKRKMEIEVMQL 454 + + ++ + I +L Sbjct: 843 ERKQSEETLRIYSEKL 858 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 76/243 (31%), Gaps = 12/243 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGK 146 D G + +S +G ++G + D + H+ + Q + + Sbjct: 620 QTDEKGVFEYVSPSHEYILGYKPHYLVGKNVFDFVHPEDRNKLKHLFYKCINNQKSATVE 679 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G Y+ ++ +Y + FG K +K++ Sbjct: 680 HRYQHADG--YYLWLETVGNVVYDEDENDVKAI-FGT-RNVTERKKTEIALKESEKRYRT 735 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYPL 261 + E +++ E L +K T++ +D E Y Sbjct: 736 IFETTGSATAIADENSTFLLVNREFEKLSGYSKEEIEKRKNWTDFIVEEDLPYLRENYYK 795 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + +S+P + +F I+ + ++Y N+ E ++ + +E + Sbjct: 796 LLANSTSVPRKYEFRFID--RNNNQKYISMAVNSIPERKIAIATLLDITERKQSEETLRI 853 Query: 322 TPE 324 E Sbjct: 854 YSE 856 >gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1245 Score = 360 bits (923), Expect = 8e-97, Method: Composition-based stats. Identities = 123/662 (18%), Positives = 237/662 (35%), Gaps = 49/662 (7%) Query: 179 RGFGIVHVNRVDNDPRALGKRLDKK--FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 R G V + + L ++ F + S I + + Sbjct: 9 RMVGTVQDITEQKEADQALRSLLREVNFQKYALDQHAIVSATDAAGRIIYANEKF--VSI 66 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT------INLNQYTKKQYFG 290 H+ ++ + E +H Y + Sbjct: 67 SGYERDELLGQNHRILKSTEHPPAFYQEMWRTIQKGETWHGEVKNNKKQGGYYWVRATIV 126 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFVYSHGNLFY 343 ++ + +Y+S R + + N +D+ I G + Y Sbjct: 127 PFMDDKGKPEQYVSIRTDITEQKESERKLISLLHEVNFQKHALDQHAIVSITDRDGFITY 186 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N F L+T Y ++ + L + D+ + + S Sbjct: 187 INEPFSLITGYSELEIVGGK----HRLLHSGVHDHAFYRDLWGTISSGKAWKGELCNRA- 241 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEAT 461 ++ N+ + I+ + R +R++E + + L + Sbjct: 242 --KNGKLFWVSTAIVPFMNEAGQVERYISIQTDITQRREIERELENNNYLSDMALRLSNS 299 Query: 462 SDGIAIINREGIILSTNRAVSKL-------FGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ EG +S+ R + F Y ++D V ++ Sbjct: 300 GYWHLLLEDEGYYISSERKALIMGDPPHPGFRYHIQDDWLANIRKTDPAMAEQVFANFTQ 359 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 I + + + + L + DI+ + + + Sbjct: 360 SIATGQDIHFSYPYV--RPVDGRTIWLETAGYVERDETGKPYRVYGVTQDITTRRAAERE 417 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + AK+IAE+ + KSDFLA +SHEIRTP+ AIIG S + + +Y N I Sbjct: 418 ILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTELSR----KQQDYINKI 473 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + N +L I+ND+LD SKIE+GK+++ P L + + +L+ + A EK + + + Sbjct: 474 HNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKAREKGLELLIAM 533 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745 +P ++ D + QI +N+++NA+ FT +G +I++ + + + D+G Sbjct: 534 DPAVPDGLIGDDLRLGQILVNLVNNAVKFTDTG-EIVVRVKQVEANDREVMLQFSISDSG 592 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT ++ K F Q S + GTGLGL ++K + + GK ++ STP G+ Sbjct: 593 IGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVESTPGVGSTFL 652 Query: 806 II 807 Sbjct: 653 FT 654 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 32/381 (8%), Positives = 95/381 (24%), Gaps = 24/381 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 DA G + +E+ G +++G + H + +++ TW+G+ Sbjct: 50 TDAAGRIIYANEKFVSISGYERDELLGQNHRILKSTEHPPAFYQEMWRTIQKGETWHGEV 109 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G Y + +P + + I + L + + Sbjct: 110 KNNKKQGG--YYWVRATIVPFMDDKGKPEQY--VSIRTDITEQKESERKLISLLHEVNFQ 165 Query: 208 HEIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---- 261 H+ S+ I P + +++ + + + + Sbjct: 166 KHALDQHAIVSITDRDGFITYINEPFSLITGYSELEIVGGKHRLLHSGVHDHAFYRDLWG 225 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN- 320 S + + N + N + + Y+S + + + Sbjct: 226 TISSGKAWKGELCNRAKNGKLFWVSTAIVPFMNEAGQVERYISIQTDITQRREIERELEN 285 Query: 321 ---LTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLD 371 L+ + + G + L + L+ + Sbjct: 286 NNYLSDMALRLSNSGYWHLLLEDEGYYISSERKAL-IMGDPPHPGFRYHIQDDWLANIRK 344 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + I ++ ++ + + + ++ + Sbjct: 345 TDPAMAEQVFANFTQSIATGQDIHF--SYPYVRPVDGRTIWLETAGYVERDETGKPYRVY 402 Query: 432 GIEPEDVDTRINKRKMEIEVM 452 G+ + R +R++ Sbjct: 403 GVTQDITTRRAAEREILRAKE 423 >gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 977 Score = 360 bits (923), Expect = 8e-97, Method: Composition-based stats. Identities = 96/404 (23%), Positives = 180/404 (44%), Gaps = 12/404 (2%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + + + +++ + + + GI + G+ L N Sbjct: 180 RSNTEQLEQIVNVRTQELQAAHHELQASEQRYRQLSSSAPIGIFESDAGGLCLYVNPHWQ 239 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 K+ G +++ + + + + + + + E + + + R Sbjct: 240 KIAGLSLDEAIGTGWHQIMHPEDDARVRREWENAVVAGRQFNSEHRYRRPDGDVRWIHAR 299 Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++ + + T+ DI+E K + +LS A A + + KS FLA +SHEIRTP+ Sbjct: 300 SVVIRSETGEVIGHVGTVEDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPM 359 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +IG + ++ + N ++A I S +L ++ND+LD SKIE+GKM Sbjct: 360 NGVIGMTNLLLDTSL----NNEQRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDL 415 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 +L + V + L+ A+ K I + N+P R+ D ++Q+ N++SNAI FT Sbjct: 416 DFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFT 475 Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +G ++ I T+ ++ ++ L+V DTGVG++ + + F Q S R GTG Sbjct: 476 QTG-EVTIRTSCLDDQGSQCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTG 534 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 LGL + K +V+ G + STP KG++ L P + Sbjct: 535 LGLAICKQLVEKMHGCIGLESTPGKGSIFWFTLLLSKQDVPPEI 578 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 21/261 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144 + DA G ++ K G + IG + + + + Sbjct: 222 IFESDAGGLCLYVNPHWQKIAGLSLDEAIGTGWHQIMHPEDDARVRREWENAVVAGRQFN 281 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G I ++ I S E G G V A + Sbjct: 282 SEHRYRRPDGD--VRWIHARSVVIRSETGEVIGH--VGTVEDITERKYVEAQLSKACDAA 337 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 +K + + P + + L + + + E Sbjct: 338 LESARLKSRFLANMSHEIR-------TPMNGVIGMTNLLLDTSLNNEQRDFAETIRASAE 390 Query: 265 EESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + DF I + T + L + + + E L+ + H E P Sbjct: 391 GLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVP 450 Query: 324 ETVDKCPIPFFVYSHGNLFYA 344 + G + Sbjct: 451 TRLRG--------DAGRIRQV 463 >gi|322419614|ref|YP_004198837.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320126001|gb|ADW13561.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 1264 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 106/777 (13%), Positives = 241/777 (31%), Gaps = 79/777 (10%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ 140 + + A G ++ G ++G + +V+ + + +L+ + Sbjct: 379 PIPVFYK-GADGRYLGCNQAFLNFTGFTREGLVGKTVSEVTPSPLAEAHHRADLELIAKG 437 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +T +G + + N G G ++H + + Sbjct: 438 GVQIYETKAL--QGDQTLRDVVFFKTSFTTMNGSCGGVLG--VMHDITERKLAESALQSQ 493 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSS--LTEYYAHK 250 + L + V ++ + P + +++ Sbjct: 494 KEFAESLVLNMTIPTFVLDAQHRVIIWNHALEALTGIKAPDVLGTDQLWRIFYESERPLL 553 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-------------FGTLQNNSK 297 D++ + + S S+ + I + Y +++ Sbjct: 554 ADMVLNQNAGDVASNYSNYSSCRNSPLIKGGIQAEGWYKDPHGYGHYISISAAPIRDRQG 613 Query: 298 ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352 + + + +D V G + + NP+ + Sbjct: 614 GLVGAIQSLEDITERKQAQDAHEKTRRQLQLILDAAGEGINGVDMQGRITFVNPAAAQMV 673 Query: 353 KYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + + L P+ L + + + L + + + Sbjct: 674 GWTQEELLGQHQHSLMHHTREDGTGFPEQECPMALACYEGRPLQGNEELF-WRKDGSSFH 732 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E + I + + R + ++ +L + + I I + + Sbjct: 733 VEYNCSPIRED--GELVGAVVIYKDVTERRQAEDQLL----KLSQAVMQSPVAIMITDPD 786 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N +++ Y E+++ + + T + + + ++ + Sbjct: 787 GNIEFVNPRFTQVTSYTAEEVIGQNPRLLKSGKTSPELYQNMWDTITCG--RVWTGELYN 844 Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K I + S Y M I E K+ + +L A+K+ Sbjct: 845 RDKSGTTFWQHATISPIRNGSGVISHYMAFMESIGERKKLEEQLRQAQKM-----EAIGQ 899 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 V+H+ LT I+GF +++++ + ++ I +G+ + LL Sbjct: 900 LAGGVAHDFNNILTVILGFGQMLQHSL---PPDDPLRDHMEQILDAGDRATHLTRSLLAF 956 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S+ K + + V L+E + + + + ++ SF+ ++AD ++Q+ Sbjct: 957 SR----KQVMVMQQVELNELTRRHAKFL-VRIIGEDVSLKASFSKEPLLVMADSGQLEQV 1011 Query: 708 ALNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYEL 753 +N+ +NA P GG++ I T ++ V DTG GM Sbjct: 1012 LMNLATNARDAMPGGGELTIKTESVTLDKEFHRQYGYGMPGRYALVTVTDTGTGMDAETQ 1071 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +K +PF G GTGLGL + ++ + G IFS GT I PL Sbjct: 1072 QKIFEPFFTTKLP----GRGTGLGLSIVYGIIKQHGGYITIFSQRGFGTTFSIYLPL 1124 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 47/449 (10%), Positives = 114/449 (25%), Gaps = 30/449 (6%) Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 + PI G G + + + R KR + L E+ + Sbjct: 329 EANTTPISVDAGGEIGVLGDAFNQLLKDLDQQRNELKRQLEFSEKLIEVTPIPVFYKGAD 388 Query: 222 YDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + + T + + L + + + Sbjct: 389 GRYLGCNQAFLNFTGFTREGLVGKTVSEVTPSPLAEAHHRADLELIAKGGVQIYETKALQ 448 Query: 280 LNQYTKKQYF-----GTLQNN-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 +Q + F T+ + + + V IP Sbjct: 449 GDQTLRDVVFFKTSFTTMNGSCGGVLGVMHDITERKLAESALQSQKEFAESLVLNMTIPT 508 Query: 334 FVYSH-GNLFYANPSFLLLTKYKSVDDIE-----------IAGGLSTLLDAPKLSDNNAI 381 FV + N + LT K+ D + L+ ++ D + Sbjct: 509 FVLDAQHRVIIWNHALEALTGIKAPDVLGTDQLWRIFYESERPLLADMVLNQNAGDVASN 568 Query: 382 KPVMLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + I + + ++ ++ + + + Sbjct: 569 YSNYSSCRNSPLIKGGIQAEGWYKDPHGYGHYISISAAPIRDRQGGLVGAIQSLEDITER 628 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E QL IL+A +GI ++ +G I N A +++ G+ E++L + Sbjct: 629 KQAQDAHEKTRRQLQLILDAAGEGINGVDMQGRITFVNPAAAQMVGWTQEELLGQHQHSL 688 Query: 501 LEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 + + + K+ + + Sbjct: 689 MHHTREDGTGFPEQECPMALACYEGRPLQGNEELFWR-KDGSSFHVEYNCSPIREDGELV 747 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + D++E +Q +++L + + Sbjct: 748 GAVVIYKDVTERRQAEDQLLKLSQAVMQS 776 >gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 579 Score = 359 bits (922), Expect = 8e-97, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 170/372 (45%), Gaps = 23/372 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 E + + +I + ++ E + + + P L Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 HD++E K+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ + I + + +V DLLD+SKIE L E + + E +L++ Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK I + + + + D +KQ+ LN+++NA+ +TP GG + I+ + Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKD- 499 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559 Query: 797 TPAKGTLIEIIF 808 +GT+ + Sbjct: 560 ELGRGTVFTVTL 571 >gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 780 Score = 359 bits (922), Expect = 9e-97, Method: Composition-based stats. Identities = 89/377 (23%), Positives = 178/377 (47%), Gaps = 14/377 (3%) Query: 445 RKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + + + ++E+ S + N EG+ + ++ + GY ++ + T F E Sbjct: 259 QALRQSEEKFRRLVESLSSEYFLYSHNTEGVFEYVSPSIRTVLGYDPQEFMTHYATYFTE 318 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558 ++ + + + + K+ + + L ++ + Sbjct: 319 NPINMQAVNHTEASIRGEQQASYVIEIFN--KQGQAVRLDVLEYPIFDKDGRVIAVEGLA 376 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++E + + +L AK+ AE + KS+FLA +SHEIRTP+ +I+G +E++ P Sbjct: 377 HDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSESPLTP- 435 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y R+G+ +L+++ND+LD+SK+E+G++ L+ +P +L E + + L++ Sbjct: 436 ---EQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENL 492 Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736 A E+ + +R IP + D ++QI +N++ NAI FT G +I + + Sbjct: 493 ARERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATN 552 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V D+G+G+ + + F QI +S G+GLGL + +V+ GK ++ S Sbjct: 553 LLFHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKS 612 Query: 797 TPAKGTLIEIIFPLYDT 813 +G+ PL Sbjct: 613 ALGEGSCFTFTLPLPPV 629 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/290 (9%), Positives = 78/290 (26%), Gaps = 11/290 (3%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKT 105 + EQ Q + SN SE F + F ++ + G + +S + Sbjct: 241 EQEEQQLRLIQQSLTQSNQALRQSEEKFRRLVESLSSEYFLYSHNTEGVFEYVSPSIRTV 300 Query: 106 IGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 +G + + ++ +++ NH ++ + ++ +G + + + Sbjct: 301 LGYDPQEFMTHYATYFTENPINMQAVNHTEASIRGEQQASYVIEIFNKQGQAVRLDVL-- 358 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 PI+ ++ G + H + ++ + K ++ + Sbjct: 359 EYPIFDKDGRVIAVEG--LAHDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRT 416 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-----TIN 279 + + + K L ++ L + E Sbjct: 417 PMNSILGMAELLSESPLTPEQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPF 476 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + L+N ++E L + + + Sbjct: 477 NLPELLQSVVDLLENLARERGLALRLERMEEIPTLCQGDRARLRQIMVNL 526 >gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6] gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6] Length = 1328 Score = 359 bits (922), Expect = 9e-97, Method: Composition-based stats. Identities = 105/506 (20%), Positives = 201/506 (39%), Gaps = 30/506 (5%) Query: 325 TVDKCPI---PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + P+ +Y L + T S + + + ++L + K ++ Sbjct: 333 LLHQFPVQQVSIAIYRDDKLIRIAGAGYDDT--ISREISDQSSTQLSVLLSDKPYSMKSL 390 Query: 382 KPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI------- 433 + + + + N++ + + + Sbjct: 391 QGKYTTHVNGGVLELNEIYYFPLCVNKQPVALLELGTVDTLTPLQYQWLSQMLDDLSVSI 450 Query: 434 --EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 R ++K+ + IL AT + + ++ +G L+ N S+L G + + Sbjct: 451 QLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHE 510 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 I+ + Q S + + LS + + + + + + S Sbjct: 511 IVGRTPIEVFSQQDASHHFTQVHQELSQE-QCSKNYELSLLDSQGGCRDMLVCEASFNNS 569 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D++E KQ +++L AK A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 570 QGRVSGIVGILLDLTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 629 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +P +Y I+ S +L I+ND+LD SKIE+GK+++ SLDE Sbjct: 630 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 685 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726 +++ A EK I +P ++ D + Q+ +N+ NA+ FT G +I+ Sbjct: 686 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKG-EIL 744 Query: 727 IST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +S + + + V+DTG+G+ ++ F Q S GTGLGL ++K Sbjct: 745 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 804 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 +V+ G+ + S G+ Sbjct: 805 QLVELMGGQLSVSSAVGMGSTFTFTI 830 >gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1129 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 106/400 (26%), Positives = 183/400 (45%), Gaps = 10/400 (2%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + NQ ++ E D + + ++ ++ + +L+ + + ++ GIIL Sbjct: 321 VDEAEKNQTTVKEHNERLKTEIRDRKKAESALQGQLSFMQVLLDTIPNPVYYFDKNGIIL 380 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 NRA S L G + L + +L+ + +E Sbjct: 381 GCNRAFSSLLGKEGWGTIGTSMVELLPTKAAEKLMDLGERVLNGHEPVRFQLPMDIDGQE 440 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + +S M D++ Q +L AK+ AE+ + KS FLA +SHE Sbjct: 441 YRFFFNQAAFRLNENNSGVVGVMEDVTALIQNAVELRKAKEEAERANRAKSAFLANMSHE 500 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ A++G +E+ + + EY I + ++DI+ND+LDISKIESG M Sbjct: 501 IRTPMNAVLGMTELALETTY----DEDQREYLETIHEASCSLMDIINDILDISKIESGHM 556 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 + P L E ++ S + A+ K + + + + D ++QI +N+LSN Sbjct: 557 EIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELAESYIGDSVRIRQIMVNLLSN 616 Query: 715 AIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 A+ FT G +I++S + V +R+ DTG+G++ E+ + PF Q S R Sbjct: 617 AVKFTDEG-EILMSVKAMEKTAKMDSVEIRIEDTGIGLSEKEIARIFSPFIQADVSTTKR 675 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + K +V+ GK + S P KG++ PL Sbjct: 676 YGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIPL 715 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 31/292 (10%), Positives = 77/292 (26%), Gaps = 19/292 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D +G + + +G + IG + ++ + +G+ + + Sbjct: 370 VYYFDKNGIILGCNRAFSSLLGKEGWGTIGTSMVELLPTKAAEKLMDLGERVLNGHEPVR 429 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 I+G + AA + N G ++ ++ ++ Sbjct: 430 FQLPMDIDGQEYRFFFNQAAFRLNENNSGVVG-----VMEDVTALIQNAVELRKAKEEAE 484 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260 + K + + L M T ++ + + Sbjct: 485 RANRAKSAFLANMSHEIRTPMNA----VLGMTELALETTYDEDQREYLETIHEASCSLMD 540 Query: 261 -----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L S+ S + D H +L + K + + E + +Y Sbjct: 541 IINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELAESYI 600 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + V+ G + + + K SV+ G+ Sbjct: 601 GDSVRIRQIMVNLLSNAVKFTDEGEILMSVKAMEKTAKMDSVEIRIEDTGIG 652 >gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1203 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 118/596 (19%), Positives = 206/596 (34%), Gaps = 50/596 (8%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYF 289 P R+ + + + + P E + H N+ K Sbjct: 350 PASRLLTHLEECSAEPIKPPEKITVGWAPWFQLVSRIFEENKQYTRHLAEQNRRLDKLVA 409 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSF 348 + + ++ L +D P F G N S Sbjct: 410 QRTERL-------------KDTTERREQEYALLRSLLDSIPEAIVFKDKEGRYLGCNKSA 456 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + + I L + A +L L Sbjct: 457 ERMLGFSESEMIGQFS--DALAPDEQSLRIRAEDERVLTDRTPLRYQEKVELA------G 508 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-- 466 + + + N+ E + + + + ++ + + ++A DG+ Sbjct: 509 KPVLLDTLKIPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDW 568 Query: 467 IINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 ++ E II N A + GY V + L + + + Y + L+ + Sbjct: 569 YLDSEQII--CNPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPV-GA 625 Query: 525 LEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + K + L + T DI+ K+ + + AK+ AE Sbjct: 626 YDIEFRMLGKNGEYHWLLSRGRVVEFTPKKQPKRMVGTHKDITRHKRNEVAMLEAKQDAE 685 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + +KS+FLA +SHEIRT + AIIG ++ + P + +Y S + +L Sbjct: 686 MANLYKSEFLANMSHEIRTRMNAIIGMLQLAQRTSLTP----QQKDYLEKAGFSAHSLLR 741 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 I+ND+LD SKIE+GK+ L LD+ + A+ + L A EK + + IL Sbjct: 742 IINDILDFSKIEAGKLELERIGFPLDKVLDHALDINALKAQEKGVELLLYAPVTAGLILE 801 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYE 752 D + Q+ +N+LSNA+ FT SG I E + VRDTG+G++ + Sbjct: 802 GDPLRLGQVLINMLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQ 858 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q S + GTGLGL ++K +V G + S G+ Sbjct: 859 QATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEMGVGSTFSFTI 914 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 16/224 (7%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDL 136 + D G ++ + +G +MIG D + + Sbjct: 434 DSIPEAIVFK-DKEGRYLGCNKSAERMLGFSESEMIGQ-FSDALAPDEQSLRIRAEDERV 491 Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRA 195 L + + +E V +D +P Y+R E G + R Sbjct: 492 LTDRTPLRYQE---KVELAGKPVLLDTLKIPFYNRRGELLGL--IAVWRDVTREYESAEQ 546 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKD 251 L ++ + ++ G + I + L K + S + H D Sbjct: 547 LRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKVNEFPALVSTIDELIHPD 606 Query: 252 DVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 D ++ E+Y L + + + N + ++ Sbjct: 607 DRIRVEEYREQYLANPVGAYDIEFRMLGKNGEYHWLLSRGRVVE 650 >gi|71905886|ref|YP_283473.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71845507|gb|AAZ45003.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1066 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 99/533 (18%), Positives = 205/533 (38%), Gaps = 43/533 (8%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + +++ P+ + G + Y NP F +T Y S + Sbjct: 395 QRLAQEAALRVQADELKVLSRAIEQSPVSIVITDTGGCIRYVNPKFEQVTGYTSQQVLGQ 454 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + + Sbjct: 455 NP----RILSSGEKSPDEYRELWRTIKSGQTWQGEFHN---RRQDGSLFWERASISPIID 507 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + ++ + + + + + + ++ +IL++ I I + NR V Sbjct: 508 EQGQILHFLAVKEDISEHKQIEEALRVSEYKMATILDSVEAYIYIKGTDYCYQYANRRVC 567 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +LF + I+ T F + T + + ++ R + + T + ++ S Sbjct: 568 ELFAREMNGIVGHQDTEFFDPATCANLRRNDRRVIEQGERVV--EEEVNRTVDGQITSAF 625 Query: 543 III-KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE------------------ 579 + I L DI+ KQ + +L H ++ E Sbjct: 626 LSIKIPLRDQDGQIYALCGISTDITVRKQAEAELEHYRQHLETLVQSRTVELARAKDAAE 685 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS FLA +SHEIRTP+ AI+G + +++ + R E I S N +L+ Sbjct: 686 AANRAKSSFLANMSHEIRTPMNAIMGLTHLLQKDVL----DSRARERLGKIGESANHLLN 741 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 ++ND+LD+SKIE+G++ L S + + + IS++ A + + + + A+++P +L Sbjct: 742 VINDILDLSKIEAGRLALEIREFSPEAVLRQTISMLDERAAAQGLRLTSHLASDVPALLC 801 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELE 754 D + Q LN + NAI F+ G +I + + + V+D G+GM + Sbjct: 802 GDAVRIGQALLNFVGNAIKFSERG-EIALRARVDRRDGEQVMLRFEVQDQGIGMDAGQQA 860 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + F Q +S + GTGLGL + + + G + S G+ + Sbjct: 861 RLFQSFSQADDSTTRKYGGTGLGLAINRHLARMMGGDVGVDSALGVGSTFWMT 913 Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 70/247 (28%), Gaps = 10/247 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 D G ++ ++ + + G + +++G +S D + +K TW G+ Sbjct: 427 TDTGGCIRYVNPKFEQVTGYTSQQVLGQNPRILSSGEKSPDEYRELWRTIKSGQTWQGEF 486 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ + PI + F + + + K + + Sbjct: 487 HNRRQDGSLF--WERASISPIIDEQGQILHF--LAVKEDISEHKQIEEALRVSEYKMATI 542 Query: 208 HEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLT 263 + + + Y +++ R N + + + Sbjct: 543 LDSVEAYIYIKGTDYCYQYANRRVCELFAREMNGIVGHQDTEFFDPATCANLRRNDRRVI 602 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + E+E T++ + L++ + + ++ + Sbjct: 603 EQGERVVEEEVNRTVDGQITSAFLSIKIPLRDQDGQIYALCGISTDITVRKQAEAELEHY 662 Query: 323 PETVDKC 329 + ++ Sbjct: 663 RQHLETL 669 >gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 1364 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 125/707 (17%), Positives = 243/707 (34%), Gaps = 65/707 (9%) Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + PI + G+R GF I P+ + + Sbjct: 185 SGEPIMTSPISLFGYRVPRESGFWLLLAIYREGMPLQTPQQRMVATSGWVYAPFSLAQIV 244 Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S E+ DI + + A V+ T ++ P Sbjct: 245 QSALGERDDIALDMSDRNEPTHNLYRSGTPAIDSALGPPVVTLLPMYGRTWVITAHPTAS 304 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++N N + + L N + L Sbjct: 305 FIASLNQNSPWLIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + NP+ + Y + + I+ L+ LL + Sbjct: 365 AETPDGRITLWNPAAEAMFGYTAEEAIDQ--DLTMLLAPQPYAMPEIDHADA------AL 416 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446 A ++ T+ + + + + + D + ++ Sbjct: 417 AANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNAS 476 Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +E +V + +IL I + G + N A K+ GY +++ + Sbjct: 477 LEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGR 536 Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541 + L + + TLE + + + L + Sbjct: 537 RKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L Y D+ E K ++ +L A A+ + KSDFLA +SHEIR Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLIEQKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+G +++ + IDRS +L+I+ND+LD SKIE+G+++L Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716 P L++ L++ + K + + + +L D + Q+ +N++ NAI Sbjct: 713 ECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772 Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++++S + + ++ VRDTG+G++ + PF Q S R Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 831 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G+GLGL +++ +++ G+ + S P +G+ + L ++ P + Sbjct: 832 GGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 878 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 48/443 (10%), Positives = 116/443 (26%), Gaps = 47/443 (10%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + REF G G+G +H RV + + ++ + + E+Y Sbjct: 94 SYSRSRDYPREFPGVLGYGYIH--RVAPADEDAFLQNARADGAPDIQRRPLAPWDGERYI 151 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + + + + P++TS S + + Sbjct: 152 VLYFEPESSGNHPLGIDIASDPHRRAAALQAARSGEPIMTSPISLFGYRVPRESGFWLLL 211 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + LQ + P A + + Sbjct: 212 AIYREGMPLQTPQQRMVATSGWVYAPFSLAQIVQSALGER-------DDIALDMSDR--- 261 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N L + + + L P ++ + + T ++ Sbjct: 262 -NEPTHNLYR-------SGTPAIDSALGPPVVTLLPMYGRTWVITAHPTASFIASLNQNS 313 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 W ++ + + + ++ + M+L +++ +S+ Sbjct: 314 PW------------LIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSE 361 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I +G I N A +FGY E+ + + T+ L + + Sbjct: 362 AIVAETPDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAP--QPYAMPEIDHADAALAAN 419 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579 T+ ++ + + + S DIS+ + + E Sbjct: 420 ASAAQTMH-HRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNASLE 478 Query: 580 KESSHKSDFL--------ARVSH 594 + + ++ L A ++H Sbjct: 479 HQVAERTGELVKFSVLQRAILAH 501 Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138 D+ G++ + K +G A ++IG R + + + L+ Sbjct: 509 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 568 Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 T+ W + +P+ L + + + G+ G + Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLIEQKLQ 626 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + ++ K + + ++ Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686 Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ + E +LNQ + S + E + Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + V+ G + + F Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 31/376 (8%), Positives = 78/376 (20%), Gaps = 14/376 (3%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149 G + + G A + I L + + P D N +T Sbjct: 368 PDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAPQPYAMPEIDHADAALAANASAAQTMH 427 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G ++ + + PI SG F L+ H Sbjct: 428 -HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRSIDLNASLEHQVA 482 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + G + + + + + + + + Sbjct: 483 ERTGELVKFSVLQRAILAHAGYAIIATDSS--GFVTLFNPAAEKMLGYNAAEVIGRRKAS 540 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E + Q + + + S + + + + Sbjct: 541 QFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 H + + L + K + + SD A + Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLIEQKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + L + + I + + + +E Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714 Query: 450 EVMQLCSILEATSDGI 465 L + + ++ + Sbjct: 715 APFDLNQLFDNIAELM 730 >gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1080 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 140/825 (16%), Positives = 280/825 (33%), Gaps = 59/825 (7%) Query: 27 KKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT 86 +K+ + + + E + Q + N L E ++F F Sbjct: 143 QKETEAALQRANQELEQRVAERTAQLEQVNTALRESEERNQLAMEVAWMFT-------FE 195 Query: 87 WNIDAHGYLKEISEELPKTIG---NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W + E S + +G A + G D L +N+ Sbjct: 196 WEPNLD--TIERSPQSASILGLKSPSAQQDTGTSYFQRVHPDDRDRFLAGLQALAPENST 253 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 Y T + + V ++ + ++ + + R G+ A + Sbjct: 254 YKITYRF-VRPDGQIVILEESGRALFDGQGQLT--RIIGMTADVTERQQLEAELQESRAT 310 Query: 204 FSH----------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDD 252 I + I + + ++ + E + D Sbjct: 311 LHRQLTEIETIYQSAPIGLNVLDTDLRFVRINQRLAEINGFSVEEHIGRTIRELLPNIAD 370 Query: 253 VLKTEKYPLLTSEESSLPEQ---EDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRN 307 ++ +L + E L + E + + + + + + Sbjct: 371 TVEELLCAILETGEPLLNVEIRGETPARPGVQRVWLESFLPLKDGDRVIGINTVCEDITE 430 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + E D + +V G Y + S+ T + G L Sbjct: 431 QIQVEEALRQSEERFRSMADNALVMVWVTDATGYCTYLSQSWYEFTGQTEATGL-GFGWL 489 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L ++ A S+ A A + ++ + Sbjct: 490 DAL-----HPEDCAFARETFVSSNTRHEAFRAE-YRLRRRDGEYRWAIDAASPWFGADRQ 543 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLF 485 G + D + + + +L + + G N G + + +F Sbjct: 544 YKGYIGSVIDITDRKQAEEALRESEDRLRMAITSAQLGTWDWNLITGELR-WDTGCKAMF 602 Query: 486 GYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRI 543 G + + + F L + + + L+ L + E+K+ LR Sbjct: 603 GLSPDGESSIELFFEGLHPDDRDRLQEIVQAALNPVLGGFYDTEYRTIGIEDKVERWLRA 662 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARV 592 + + +S T+ +I+E KQ + + A++ AE+ + K +FLA + Sbjct: 663 KGQAYYDAKGKPLRFSGTVLNITEQKQAEAQREQLLRQEQAAREAAERANRMKDEFLAVL 722 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL I+G+++++++ + + + + + I+R+ + +V DLLDIS+I Sbjct: 723 SHELRTPLNPILGWAKLLQS---PLVSSDKLQQGLSAIERNAKQQVQLVEDLLDISRIIR 779 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 GK+ L F + L E ++ A+ V+L A K I + ++ ++ D ++Q+ N+L Sbjct: 780 GKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDADRLQQVVWNLL 839 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI F +GG + + T ++V DTG G+ L + F Q +S Sbjct: 840 SNAIKFNSTGGWVTVQLTSVDR-HAQIQVSDTGKGIQPEFLPHVFELFQQQDSSSTRSFG 898 Query: 773 GTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816 G GLGL +A+ +V+A+ G S G + PL P Sbjct: 899 GLGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLPLMPVPSP 943 Score = 144 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 60/590 (10%), Positives = 153/590 (25%), Gaps = 73/590 (12%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 + P + T + ++ S + F F+ R++ I GY K I+ Sbjct: 9 ADPPLESQSFPAVNTQEGGDAASPSEEA-----FFFE---RSLDLLSVIGLDGYFKRINP 60 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160 +T+G + + D+ + L + + Sbjct: 61 VFSQTLGYSEAEFLASPFLDLVHPDDHSATLREMEKLNTGLPTLYFENRYRTKNGCYR-W 119 Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------------LDKKFS 205 + A P R + + + A +R L++ + Sbjct: 120 LAWTASPQIDRG------VMYCVARDMTQQKETEAALQRANQELEQRVAERTAQLEQVNT 173 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257 L E ++ + + + + P R S L T Sbjct: 174 ALRESEERNQLAMEVAWMFTFEWEPNLDTIERSPQSASILGLKSPSAQQDTGTSYFQRVH 233 Query: 258 ---KYPLLTSEESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + L ++ PE F + ++ L + + + Sbjct: 234 PDDRDRFLAGLQALAPENSTYKITYRFVRPDGQIVILEESGRALFDGQGQLTRIIGMTAD 293 Query: 309 PSLSAYFDEGENLTPETVDK-----------CPIPFFVYSHG-NLFYANPSFLLLTKYKS 356 + + + T+ + PI V N + + Sbjct: 294 VTERQQLEAELQESRATLHRQLTEIETIYQSAPIGLNVLDTDLRFVRINQRLAEINGFSV 353 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TF 415 + I + LL P ++D + + + R T + + +F Sbjct: 354 EEHIGRT--IRELL--PNIADTVEELLCAILETGEPLLNVEIRGETPARPGVQRVWLESF 409 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +P + ++ + N + + + + + + S+ + + + + G Sbjct: 410 LPLKDGDR---VIGINTVCEDITEQIQVEEALRQSEERFRSMADNALVMVWVTDATGYCT 466 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 +++ + G L + L + + S + ++ Sbjct: 467 YLSQSWYEFTGQTEATGLGFGWLDALHPEDCAFARETF--VSSNTRHEAFRAEYRLRRRD 524 Query: 536 EKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + Y ++ DI++ KQ + L ++ Sbjct: 525 GEYRWAIDAASPWFGADRQYKGYIGSVIDITDRKQAEEALRESEDRLRMA 574 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 2/129 (1%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E + D +++I +G N S+ GY + L PF + + S + ++ Sbjct: 39 FERSLDLLSVIGLDGYFKRINPVFSQTLGYSEAEFLASPFLDLVHPDDHSATLREMEKLN 98 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + TL TK L D+++ K+ + L A + Sbjct: 99 TG--LPTLYFENRYRTKNGCYRWLAWTASPQIDRGVMYCVARDMTQQKETEAALQRANQE 156 Query: 578 AEKESSHKS 586 E+ + ++ Sbjct: 157 LEQRVAERT 165 >gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 454 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 118/448 (26%), Positives = 196/448 (43%), Gaps = 11/448 (2%) Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 +P+ S N+ + + + D L E L T P + P Sbjct: 3 HSPRSSFANSPRALAVLGPDGMLCHVGETLCRALGMAEPRLIGT-RPGWVDGPDSCHTPL 61 Query: 431 NGIEPEDVDTRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G + + ++ + ++ +I+E T + I +++ +G +L NR G Sbjct: 62 PGNQILVELAPEAEARLRDSLRVNLEMRAIIENTFEFIGLLSPDGRLLDANRTALSFIGL 121 Query: 488 PVED-ILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 + IL F L I + + T + + + Sbjct: 122 ESIEPILGVHFAETPWWEHSPKERAMLKDGITRASAGEFVRFETTHIDAHGGIAYVDFSV 181 Query: 546 KKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 K +P + DI++ K+ + L AK+ AE + KS FLA +SHE+RTPL Sbjct: 182 KPVPDRDGNIQFLVPEGRDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHELRTPLN 241 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 A+IGFSE I GP R +EY I +G + ++ D+LD+S+IE+G+ L E Sbjct: 242 AVIGFSEAILAGAAGPASLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTELDEED 301 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 E V A L++ + + A +PR+ D R ++QI LN+ NA+ FTP+ Sbjct: 302 CDPTELVRAAARLLEHKSVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPT 361 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG++ I T + + L V DTG+G+ K + F Q +S R +G+GLGL + Sbjct: 362 GGKVGICATLVPDG-LALVVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLGLAIV 420 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + V+A+ G + S P +GT I ++ P Sbjct: 421 RHFVEAHGGTVSLDSAPGQGTRITVLLP 448 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 25/252 (9%), Positives = 64/252 (25%), Gaps = 20/252 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 F + G L + + IG + + ++G+ + + + +LK T Sbjct: 98 FIGLLSPDGRLLDANRTALSFIGLESIEPILGVHFAE---TPWWEHSPKERAMLKDGITR 154 Query: 144 --YGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 G+ + I+ +D + P+ R+ G A Sbjct: 155 ASAGEFVRFETTHIDAHGGIAYVDFSVKPVPDRDGNIQFLVPEG--RDITQRKRAEAALV 212 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 ++ + K + + +P + ++ + Sbjct: 213 SAKQEAEAANRAKSQFLATMSHELR-----TPLNAVIGFSEAILAGAAGPASLERCVEYM 267 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + ++ + ED ++ + L + E + G Sbjct: 268 ELIHSAGQHLRALIEDILDVS----RIEAGRTELDEEDCDPTELVRAAARLLEHKSVVSG 323 Query: 319 ENLTPETVDKCP 330 + T P Sbjct: 324 VDFTVVIAPGLP 335 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 40/173 (23%), Gaps = 6/173 (3%) Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + N + E + T + + G L Sbjct: 54 PDSCHTPLPGNQILVELAPEAEARLRDSLRVNLEMRAIIENTFEFIG---LLSPDGRLLD 110 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 AN + L +S++ I T + +K + S + H Sbjct: 111 ANRTALSFIGLESIEPILGVHFAETPWWEHSPKERAMLKDGITRASAGEFVRFETT-HID 169 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + P + + + G + + + + + + Sbjct: 170 AHGGIAYVDFSVKPVPDRDGNIQFLVPEG--RDITQRKRAEAALVSAKQEAEA 220 >gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 130/752 (17%), Positives = 263/752 (34%), Gaps = 45/752 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYA----FKMIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141 W ++ + E +G D +N I L+ + Sbjct: 259 WTLETDELWT--NHEFWILLGYRQNGEFPHNQIASFRDHVHPKDRQLLDNAIETHLRMRL 316 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + W ++ + + RN R G+V + Sbjct: 317 PLDVEIRFWHLQDECRW----MRLRAQTERNANDVPVRLAGVVEDIHAHKLAELKLNGRE 372 Query: 202 KKFSHLHEIKKGH---SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKD--DV 253 ++ L + + + + + + + DV Sbjct: 373 QEVQRLALVARQTTNGVVITNSSGQVEWVNEGFSRLTGYTLDDLLGRKPGSVLQGPHSDV 432 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + S + + + +Y + + + + +++ ++ S Sbjct: 433 GTISDMRRAIAAGQSFKAELVNYHKSGREYWVRIEGDPIHDEQGQLTGFIAIQSDISERV 492 Query: 314 YFDEGENLTPE----TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 F + + E ++ P+ + G + + N + + L + + Sbjct: 493 QFAQELAASREQFKNMLEHLPVAAYTCDANGLITFYNKAAVKLWGRTPALNNPADRYCGS 552 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + ++ R+ + ++ + N E Sbjct: 553 FRLFERNGTPLPAEKHLMARALSQPGQNQSSEIIVEAPDGSRKTGMAYAKALVNAEQEVT 612 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAI-INREGIILSTNRAVSKLFG 486 + + + ++ + +L L+ + I + +GII N + G Sbjct: 613 GGVNVIVDMTERIALEQSLREATARLELCLKILDEHAIVAETDLKGIIRDVNDMFCDVSG 672 Query: 487 YPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 Y E+++ + P +I + K +L + I Sbjct: 673 YSREELIGNSHRILNSGFHPRTMWTEVFRQIARTG---MWQGEICNRRKNGELYWVDTTI 729 Query: 546 KKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + Y +DI+ +L AK+ A S KS+FLA +SHEIRTPLT Sbjct: 730 AAIHDAAGRPNGYFAIRNDIT-------ELKAAKEAALAASHSKSEFLANMSHEIRTPLT 782 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIG++E++++ + N I +G +L I++D+LD+SKIE+GKM++ Sbjct: 783 AIIGYAEILRDDPEIAESPEKRSHALNTIHEAGRHLLTIISDILDLSKIEAGKMSIEQTD 842 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 S+ +S+ S ++ A K + + T A IP RI +D ++QI +N++ NAI FT Sbjct: 843 TSVANVLSQVESFLRPRAVGKGLSLTTRLAQAIPDRIQSDPTRLRQILMNLVGNAIKFTE 902 Query: 721 SGG-QIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +G Q+ +S E + + DTG GMT+ + E+ + F Q S + GTGLGL Sbjct: 903 AGHIQLTVSRIQREDKEFLQFDIEDTGTGMTDTQREQIFQAFSQADTSVTRQYGGTGLGL 962 Query: 779 PLAKAMVDANMGKFY-IFSTPAKGTLIEIIFP 809 + + + G + ++S +GT P Sbjct: 963 VICRRLARLMNGDVWLLWSEAGRGTCFRAALP 994 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 46/352 (13%), Positives = 96/352 (27%), Gaps = 33/352 (9%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + ++ LT+ + ++ L + D I N T Q L + Sbjct: 53 QSFHREIDLTKRELRSRHLAVSQDLLSLRIVQELNRSPVDREMIGENLATLNQQHDQLVD 112 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 + L + P + L+ T + N A S + Sbjct: 113 DLIRRNRGLPVQFRPIVDHVLALTPLLSEFTAE-IRTALASDGQDNASVAAASVIQRQYG 171 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 ++ ++ A S AA+ +N L ++ Sbjct: 172 SALQELSQA-----------------------LNSRSETFAAAHPRWGWLFNSRTLLGLS 208 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + ++ L S + AT+ G+ E Sbjct: 209 CFLAPVILGYRLQRQFQAQADQLTARG---DEILATKRHLLSAIGATAGGLWSWTLETDE 265 Query: 475 LSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 L TN L GY F + ++++ + L + L +E Sbjct: 266 LWTNHEFWILLGYRQNGEFPHNQIASFRDHVHPKDRQLLDNAIETHLRMRLPLDVEIRFW 325 Query: 531 GSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 E + + LR ++ + + DI K + KL+ ++ ++ Sbjct: 326 HLQDECRWMRLRAQTERNANDVPVRLAGVVEDIHAHKLAELKLNGREQEVQR 377 >gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus pumilus ATCC 7061] Length = 580 Score = 359 bits (922), Expect = 1e-96, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 159/363 (43%), Gaps = 23/363 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E GI +I++ G I NR K F + K + Sbjct: 236 EMQRDRLQTVIENIGAGIILIDKMGYIHLVNRTFRKQFKVQKHIYMHKLYHEAFTHEEII 295 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + + +R+ L L E + + + L HD++E K Sbjct: 296 ELI-DEIFMTETKVRKFL---RLAVDIERRYFQVDGVPILSTDDEWKGIVLVFHDVTETK 351 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + + DF+A VSHE++TP+T+I GFSE + + E Sbjct: 352 QLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTE 395 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + I + + ++ DLLD+SKIE + L+ + + E + E L++ A EK I Sbjct: 396 FLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQ 455 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + ++AD +KQI LN+++NA+ +TP GG + IS V DTG Sbjct: 456 LHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAY-EFDVADTG 514 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM E+ + + F +I + GTGLGL + K +V+A+ G + S KGT Sbjct: 515 IGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFT 574 Query: 806 IIF 808 + Sbjct: 575 VSL 577 >gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus AHT2] Length = 661 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 90/381 (23%), Positives = 172/381 (45%), Gaps = 18/381 (4%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF---TV 499 + ++ +L +IL++ G+ +++G + N +L G+ + D L +P Sbjct: 24 AEERLRDSEGRLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVLN 83 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556 +++ + + L + + +++ K + + + S Sbjct: 84 LVDEASGRPLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPIASFSGIIGCVF 143 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 D ++ + L AK+ AE+ S KS+FLA +SHEIRTPLT I+G ++++ G Sbjct: 144 VFRDTIREREIQRNLLSAKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKTPLG 203 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +Y +G +LD++N +LD+SKIE+GK+ + LD + + ++ Sbjct: 204 A----EQRQYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMA 259 Query: 677 LYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731 L A++K + + +L D ++QI +N++ NAI FT G ++ + Sbjct: 260 LRAHQKGLEFTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTERG-KVTVEAVRWPAE 318 Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N V DTG+G+ + E + F Q+ +S R GTGLGL +++ +V Sbjct: 319 ESAENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMG 378 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G + S +G+ + PL Sbjct: 379 GTIRLASREGEGSRFTVEIPL 399 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 3/143 (2%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + E + G + + NP LT + VD + + L Sbjct: 24 AEERLRDSEGRLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDAL-NRPVMEVL 82 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + S P+ + D I S L ++ + + ++ A+ Sbjct: 83 NLVDEASGRPLTAPLQRVQEDGEIIDCSGEL-VLRSRQGKNYPVSCTVAPIASFSGIIGC 141 Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452 + I + + + Sbjct: 142 VFVFRDTIREREIQRNLLSAKEE 164 Score = 39.2 bits (90), Expect = 2.8, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 13/144 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW----- 143 D G + ++ + G + + +V +++ + L+R Sbjct: 49 TDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVLNLVDEASGRPLTAPLQRVQEDGEIID 108 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201 G+ L +G N V +A + FSG G + + + + Sbjct: 109 CSGELVLRSRQGKNYPVSCTVAPIA------SFSGIIGCVFVFRDTIREREIQRNLLSAK 162 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225 ++ + K + + Sbjct: 163 EEAERASQAKSEFLASMSHEIRTP 186 >gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira platensis str. Paraca] Length = 578 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 95/540 (17%), Positives = 203/540 (37%), Gaps = 35/540 (6%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + + N+ Y+ + E E L V+ P F Sbjct: 55 DGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQAELALAESEELLRLAVNHAPDIFV 114 Query: 335 VYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 +Y L + N L T + I L + L Sbjct: 115 IYDSDRRLKFVNQRVLERTGWSEETFIGRRD--EELFL-----PEETCHYLPLLEKTIQT 167 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + TI + + ++ G+ + + ++K+ + Sbjct: 168 LTIQIGEATITLPNQTPKTVIIKYLPLLDKQGRLSQILGLTFDITHYKQAEQKLRDSEER 227 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 + E + G+A+++ +G L NR++ ++ GY ++L+ + Sbjct: 228 FRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSI 287 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 +++ + K+ ++ + + + + + +ISE + + Sbjct: 288 KKLIE-GQVKYYYVEKRYLHKQGYVIWVLLSMSIVRNIDGVPLYFIAQAQNISERRAVE- 345 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 K++F++ VSHE+RTPLTAI G ++ + + + ++ Sbjct: 346 -------------QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQE-FHKFIEI 391 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 ++ +VND+LDI ++ SG++ E S E + + I+ +Q A+ I + Sbjct: 392 ALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITL--E 449 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 ++ A ++ Q N++ NAI F+P + +S + ++ V+ +VRD G G+ Sbjct: 450 ILPTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLS-AYPQDDMVLFQVRDQGRGIP 508 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L+ F Q+ S + GTGLGL + +++++ + GK ++ S AKG+ P Sbjct: 509 PEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 568 Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats. Identities = 35/298 (11%), Positives = 87/298 (29%), Gaps = 21/298 (7%) Query: 347 SFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 ++ + + L+T+ + V+ Y+ + R + I Sbjct: 1 AYEKIWGRTCESLYQNPDSWLNTIYPEDR-------GAVINYQEKQHQNNLVKREYRIIR 53 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 N + N + G + D + + + L + D Sbjct: 54 NDGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQAELALAESEELLRLAVNHAPDIF 113 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 I + + + N+ V + G+ E + + L + + Q Sbjct: 114 VIYDSDRRLKFVNQRVLERTGWSEETFIGRRDEELFLPEETCHYLPLLEKTIQTLTIQIG 173 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E + ++ I L DI+ +KQ + KL +++ Sbjct: 174 EATITL--PNQTPKTVIIKYLPLLDKQGRLSQILGLTFDITHYKQAEQKLRDSEERFRTA 231 Query: 582 SSHKSDFLARVSHE-----IRTPLTAIIGF--SEVIKNQRFGPLGNPRYIEYANYIDR 632 + +A +S + + L ++G+ +E+++ + Y + I + Sbjct: 232 FEDAAIGMALLSSQGNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSIKK 289 Score = 41.9 bits (97), Expect = 0.44, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG-KTTL 149 G +++ L + +G +++ ++ D++ + I L++ Q +Y + Sbjct: 245 QGNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSIKKLIEGQVKYYYVEKRY 304 Query: 150 WPIEGTNLYVPIDLAALPIYSRNR 173 +G + + L+ + + + Sbjct: 305 LHKQG--YVIWVLLSMSIVRNIDG 326 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 8/166 (4%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + + +SE F D+ LK +++ + + G IG Sbjct: 84 DISDRKQAELALAESEELLRLAVNHAPDIFV-IYDSDRRLKFVNQRVLERTGWSEETFIG 142 Query: 116 MRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNR 173 R ++ + ++ G+ T P + + + LP+ + Sbjct: 143 RRDEELFLPEETCHYLPLLEKTIQTLTIQIGEATITLPNQTPK---TVIIKYLPLLDKQG 199 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 S + G+ + +++F E ++ Sbjct: 200 RLS--QILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLS 243 >gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1626 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 120/634 (18%), Positives = 227/634 (35%), Gaps = 28/634 (4%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + V D+ L L ++ G + ++ + + P Sbjct: 503 LARVGLDDDALARLDLSLAGVSPAARALRAGTTQLDDQAMETRPIDRSPEDAATGAT--- 559 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 H + Q+ + + + G L + + Sbjct: 560 ------HPSSAAFPVLIDDEPRIVLHIHAQDKHRFDDQHIELFARLAGNLGIALELAAAR 613 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361 + N + E + ++ + + Y +PSF + Y + + Sbjct: 614 AAELNAVNERLRVSEERHAFA--LEASNDGLWDWDLDTGRVYCSPSFFTMLGYTPGELVP 671 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L+ ++ R T + + ++ Sbjct: 672 HIQSWHELVHPDD--RAWVSAEAYRRIAEEGGFELEYRSRT--KDGRSLWVLSRGKVVAR 727 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + G+ + + + ++ + +IL A GI I ++ ++ NR + Sbjct: 728 APDGRPLRVVGVHTDLTTHKRIELELRTVAEEQQAILNAAPVGICFI-KDRTVVRCNRKL 786 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++FG+ + + E T +L + ++ Sbjct: 787 EEIFGHAPGAMAGTSTLPWYESEAEYQEIGR-TIAHALKEQALFHAERQLVRQDGSRFWA 845 Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 R+ + L + DI++ ++ L AK+ AE + KS+FLA +SHEIRT Sbjct: 846 RMTAQALAPGDLSKGLVGMLEDITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRT 905 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ AI+GF+ +IK P + + + + +L+I+ND+LDISKIE+ KM L Sbjct: 906 PMNAILGFAHLIKRDPLTP----SQLAQLEKLSAATHHLLNIINDILDISKIEANKMELG 961 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E L + +LV K + + + + D + QI LN++SNAI F Sbjct: 962 VEDFDLARIIDRIAALVADSVLAKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKF 1021 Query: 719 TPSGGQ-IIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G I + + +RDTG+GM+ ++E+A PF Q +S R GTG Sbjct: 1022 TEQGAVDITVRVVDAREDRPVLRFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTG 1081 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL +++ +V+ G+ + S GTL + P Sbjct: 1082 LGLTISRQLVELMGGRMGVESELGHGTLCWLEIP 1115 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 10/155 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + Q ++LE + I +G +L N +LFG E F Sbjct: 5 AAHDRHNEQGTAMLEQAPCPLLITRMDDGRLLYCNVRARQLFGLDGETCRLVSIEQFYHH 64 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDI 561 L + +E+ ++ + + + + + DI Sbjct: 65 PADRA--DLLDTLRHDGF--VVEREQEFVDRQGRAFPALVSSTLVEYGTQPALLSVITDI 120 Query: 562 SEWKQEKNKLSHAKKIAEKESSHK---SDFLARVS 593 S+ +Q + L + + + L R+S Sbjct: 121 SQRRQAEQALQQERAQLRARTERLQLHNQLLGRLS 155 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 13/147 (8%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 A D +++ P P + G L Y N L ++ Sbjct: 4 PAAHDRHNEQGTAMLEQAPCPLLITRMDDGRLLYCNVRARQLFG------LDGETCRLVS 57 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 ++ + + R D + A+ + P + Sbjct: 58 IEQFYHHPADRADLLDTLRHDG--FVVEREQEFVDRQGRAFPALVSSTLVEYGTQPALLS 115 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456 + R ++ ++ E QL + Sbjct: 116 VI---TDISQRRQAEQALQQERAQLRA 139 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 22/255 (8%), Positives = 67/255 (26%), Gaps = 17/255 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W++D G S +G +++ ++ + + + + Sbjct: 645 WDLDT-GR-VYCSPSFFTMLGYTPGELVPHIQSWHELVHPDDRAWVSAEAYRRIAEEGGF 702 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G +L+V L+ + +R + R G+ + + ++ Sbjct: 703 ELEYRSRTKDGRSLWV---LSRGKVVARAPDGRPLRVVGVHTDLTTHKRIELELRTVAEE 759 Query: 204 FSHLHEIKK------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + +V + + P E A ++ +T Sbjct: 760 QQAILNAAPVGICFIKDRTVVRCNRKLEEIFGHAPGAMAGTSTLPWYESEAEYQEIGRTI 819 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + L E++ + + +++ + L S + + Sbjct: 820 AHALK--EQALFHAERQLVRQDGSRFWARMTAQAL-APGDLSKGLVGMLEDITDEREASA 876 Query: 318 GENLTPETVDKCPIP 332 + E + Sbjct: 877 ALHAAKERAEAATRA 891 Score = 38.1 bits (87), Expect = 6.8, Method: Composition-based stats. Identities = 24/293 (8%), Positives = 69/293 (23%), Gaps = 14/293 (4%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 V + R +D LD +G + + + + + +S Sbjct: 187 VWMFRETDDAAGQLICLDLYEQASRTHTRGQILHGEMFRRELPELATRRFVAASDPLSDP 246 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQED---FHTINLNQYTKKQYFGTLQNNSKESF 300 + LL S F + Y + + + Sbjct: 247 RTAAYGPAYLTPLGITSLLDCGIVSGGRTRGVICFEHVRRPHYWEADEIAFGCQVADQLG 306 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 L + E L + + ++ + + + Sbjct: 307 MVLLTDERLQVVQSLHRSEQLLKQAQEVAQTGYWHFDFATRTLSLSDETYRIFDAPE--- 363 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + D I+ R+ + Sbjct: 364 -GSMRSIEAFNRMVPPEDRPLIEQQWRIARQGAPYRVRHRILV----GGVVKWLEERASI 418 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINRE 471 + + + + G + ++ ++E + ++ ++L +++ IA + + E Sbjct: 419 EFDGQGKPIQALGTTQDITRQMEDQFRLE-RLNRVYAMLGHSNEAIARVRDPE 470 >gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913] gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp. SM9913] Length = 1103 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 102/502 (20%), Positives = 211/502 (42%), Gaps = 23/502 (4%) Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E+ + + G + N + + ++ + I + L+ Sbjct: 269 AEESRLDAILSTAIDGIVTINIKGTILSFNKAAETIFGWQDNEVIGQNVKI--LMADDIA 326 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + ++A + I + + N + + Q G Sbjct: 327 NQHDAFLKNTTNHEVKRVIGVNRDVWAKHKNGHQFP--IRLGIGEVKQLQTETLFVGFIT 384 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVEDI 492 + + R ++ + + Q +++ G+ +++ +L + +V +L GY E+ Sbjct: 385 DLTEQRALQQSLIEKERQYRTLMNNMP-GVVFRCLLDEHWSMLFISPSVYELTGYRAEEF 443 Query: 493 LRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIK 546 + F + + + ++ + + ++ + ++ + ++ + II Sbjct: 444 TEQRITFAELIVKEDEAAISLAIDQAVASTSQYSI--EYRIRHRNGNIIWVLDQASIITN 501 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + DI++ + + L AK AE + K F+A +SHEIRTP+ AIIGF Sbjct: 502 SKDDTRWVDGVLVDITKRHEYEQSLKQAKYEAEAAAQAKQSFMANMSHEIRTPMNAIIGF 561 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ + PL + + ++ + +L ++ND+LD +K+E GK+ + +L E Sbjct: 562 SDILMD---SPLNKEQQKQII-TVNNAARSLLHLLNDILDSAKLEKGKLEIQKVHFNLQE 617 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +S L A K + + A+N+ P D ++Q+ N++ NAI FT G + Sbjct: 618 LLDNIVSTFWLDAKRKDLQLILKIADNVNPFYFGDDTRLRQVLTNLIGNAIKFTEQG-HV 676 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S TH N+ ++ V+D+G+G+ LE KPF Q + R GTGLG ++K +V Sbjct: 677 TVSVTHKPNQPILFEVQDSGIGIEKGRLEAIFKPFEQADGTTTRRFGGTGLGTTISKQLV 736 Query: 786 DANMGKFYIFSTPAKGTLIEII 807 + GK Y ST +G+ Sbjct: 737 ELMGGKIYAQSTLGQGSCFSFT 758 >gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus Ellin6076] Length = 1092 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 110/529 (20%), Positives = 194/529 (36%), Gaps = 34/529 (6%) Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357 R + E E + P F+ G + Y N +F+ + + Sbjct: 300 RRTLRIRRTAENAWTRAVEAERRFETFMAHTPAISFIKDAAGRMIYVNHAFVRFHGFSAA 359 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 I + L V+ L + + Sbjct: 360 QSIGRLD--TELFGESVAGIRERDAEVLQTGR-----PVQYLLPLPGTDGALYYWLVLKF 412 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + I + D + + + + E I I+R+G++ Sbjct: 413 LLRGEAGETRIGVVAI--DISDQQRAAELIARSEERYRMLFEEAPVAIHEIDRDGLVTRI 470 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NRA L GY +I+ + + F+ + + + R K+ + Sbjct: 471 NRAGRMLCGYSESEIIGRHASEFVAPHYREESRAAVHAKMK-GTRPLAPFERHYQRKDGR 529 Query: 538 LLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHA--------------KKIAE 579 LL + + + + D++E + + +L + A Sbjct: 530 LLRVEVHETAIFDHGGEIQGLRSCLIDLTERYEAQERLDAFALQLQQNNSALALALESAR 589 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + KS FLA +SHEIRTP+ ++G +E++ A + +SG +L Sbjct: 590 QATRLKSQFLANMSHEIRTPMNGVLGMTELLVQSGL----TEEQRSLALSVTQSGEHLLA 645 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 I+ND+LD SKIESGK+ L P + I L+ A+ K + + A +P R+ Sbjct: 646 IINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLELTYWIAAEMPARVR 705 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++Q+ LN+L NA+ FT G I +T + + + + V DTG+G+ + Sbjct: 706 GDAARLRQVLLNLLGNALKFTAEGEIAIQATFDAAADRLRVSVADTGIGIPEAAIPHLFA 765 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q NS R GTGLGL +AK++V+ G+ I S G+ Sbjct: 766 AFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIESRYGHGSTFWFT 814 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 35/382 (9%), Positives = 100/382 (26%), Gaps = 17/382 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA G + ++ + G A + IG ++ ++L+ Sbjct: 338 DAAGRMIYVNHAFVRFHGFSAAQSIGRLDTELFGESVAGIRERDAEVLQTGRPVQYL-LP 396 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 P LY + L L + E G + ++ + + ++ E Sbjct: 397 LPGTDGALYYWLVLKFL-LRGEAGE--TRIGVVAIDISDQQRAAELIARSEERYRMLFEE 453 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPLLTSE 265 ++++ ++ + H + + + + Sbjct: 454 APVAIHEIDRDGLVTRINRAGRMLCGYSESEIIGRHASEFVAPHYREESRAAVHAKMKGT 513 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 P + + + + + + ++ E S + E + Sbjct: 514 RPLAPFERHYQRKDGRLLRVEVHETAIFDHGGEIQGLRSCLIDLTERYEAQERLDAFALQ 573 Query: 326 VDK--CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + + + S FL ++ + G++ LL L++ Sbjct: 574 LQQNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTELLVQSGLTEEQRSLA 633 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD---- 439 + + +S +A + L + PF+ + + Sbjct: 634 LSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLELT 693 Query: 440 ---TRINKRKMEIEVMQLCSIL 458 ++ + +L +L Sbjct: 694 YWIAAEMPARVRGDAARLRQVL 715 >gi|16124282|ref|NP_418846.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221232965|ref|YP_002515401.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13421116|gb|AAK22014.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220962137|gb|ACL93493.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 900 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 113/786 (14%), Positives = 239/786 (30%), Gaps = 53/786 (6%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 + + + + + + FT I A G +++ G +++ Sbjct: 2 SQASTPEPAPASSFGEGEAARWFFDNASDLFT-VISAEGRFISVNDAWSHLTGWARDELV 60 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G G L++ + + + +G ++ + R+R Sbjct: 61 GQPTIKFVHPDSQAELVDTGRRLRQTGSAINELKIRCKDGR--WIW-------LQGRSRL 111 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----- 229 G++H + + R + + + L E + + Sbjct: 112 GPHGEMVGVMHDISAEVEARLELEAARRTQALLAEKAGIGVWSYEPETQRIDWAPDALAL 171 Query: 230 ---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 P + + + + Sbjct: 172 MGVSPEDIATPELFLARLPENHRAEVQAAFVHAARTGEGGTLEYRLRANDGRWFTLRATY 231 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345 + + + + E ++ P VY L + Sbjct: 232 RTEARPGSGFALKGVSQNITDVARSRDKAIWSERRARRLIEDAPFAVAVYDVDMRLRMVS 291 Query: 346 PSFLLLTKYKSVDDIEIA-----GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 P FL + + I G + ++ R + A Sbjct: 292 PRFLEIFRSTEAQVIGKTLTELTNGTRRRFVNRVARALSGE---VVTRREDRLYDAEGVE 348 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 +W + E + E +R+ +L L A Sbjct: 349 RAFRWEARPW----------RDVAGEIVGVITYMDEITALTEARREARNNARRLKVALGA 398 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSL 519 G+ I+ E + ++ G +E + + + + Sbjct: 399 ARAGVYEIDHEKQAFWGSPEFHRMMGRRIEYQDVREGIWPMVHPEDLTQLYETAATWRRE 458 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 R E + + R+ + + DI E K+ + L A+ Sbjct: 459 GRRTPQEHEVRLLSPGGEARWARVFHEVRRDGQGKALKAVGLILDIDEKKKAELALIEAE 518 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + A+ + K+ FLA +SHEIRTP+ ++G V+K + L N +G Sbjct: 519 RAAQAANEAKAQFLANMSHEIRTPMNGVLGVMHVLKRE----LPPGDSASLLNEALAAGQ 574 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 ++ +++D++DIS+IE+G+++L+ EPV + V L+ A K + + +++ Sbjct: 575 MLSTLLDDVIDISRIEAGRLDLNHEPVDPRDLVRGVARLLATQAAHKGLRLELDLPDDLG 634 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYE 752 I D V+Q N++ NA+ FT G + + + ++ + DTGVG+ Sbjct: 635 WIETDPTRVRQALFNLIGNAVKFTLKGS-VTVRAQRRITDAGPYLVFDIIDTGVGVPLEA 693 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---P 809 ++ + F Q R G+GLGL + + + G+ S P +G+ + P Sbjct: 694 QKRLFERFQQADAGTTRRFGGSGLGLAITRKLARMLGGEVSFRSVPGEGSTFSLTIAAPP 753 Query: 810 LYDTSH 815 + S Sbjct: 754 VGPPSA 759 >gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta thermophila DSM 6192] Length = 1078 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 108/532 (20%), Positives = 196/532 (36%), Gaps = 26/532 (4%) Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343 L F E ++ + + + Sbjct: 280 ATWITDALGRRKGTLFHLSDITAEREAVNTLALRERQYRNVLENITVGVMLINREYVVRA 339 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N G + L + + Sbjct: 340 WNRRMEEWFPGIP------WGKEGVRCVEICKGPVLPCEECPLPPVFASGKTQRREVRRH 393 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 E +M P + + + R +E + ++ A++D Sbjct: 394 TEEGERIFSMVATPHL--DDEGVIRGVVVLLEDVTAERRATEGLE----RYKFMVNASAD 447 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDLR 522 +++I+ + + N A K G ED + + + T + Y+ + Sbjct: 448 FMSLISSDFRYEAVNDAFCKAHGRGREDFVGRRVADLWGEETFRGKILPYIRRAFEGERV 507 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKE 581 ++ G E + L + + + + DI+ +K +L A++ AE+ Sbjct: 508 VVEDRFVFGLLGE-RDLEVSYNPYREGDRITHVAVVTRDITSYKDALRRLEDARRQAEEA 566 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S KS FLA +SHEIRTPL AI G S+++ R P E I S +L ++ Sbjct: 567 SRAKSAFLASMSHEIRTPLNAITGMSDLLLLSRVSP----EVEEGLAIIKDSAGTLLALI 622 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD+S+IE+G++ L P+ + V + + A K + + +P ++ D Sbjct: 623 NDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEGLPPVVNGD 682 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKA 756 ++QI +N+LSNA+ FT GG + +S T + + EV L V DTG+G+ +LE+ Sbjct: 683 PVRIRQILINLLSNALKFTEEGG-VTLSVTGHRMYDRDWEVELVVEDTGIGIPPEKLERI 741 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF Q +S R GTGLGL +++ + + G + S +G+ Sbjct: 742 FEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRI 793 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 45/368 (12%), Positives = 100/368 (27%), Gaps = 26/368 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA ++ I++ + +G+ + ++ G + DV + P + ++R G T Sbjct: 218 LDATDRIRFINKACERLVGHASQEVRGKEI-DVLFPGGLFPLSLRAH-MERFEIQVGSTL 275 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 ++ A I G F + + L R + + L Sbjct: 276 F------------EVHATWITDALGRRKGTL-FHLSDITAEREAVNTLALRERQYRNVLE 322 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 I G + +E + + + K VL E+ PL S Sbjct: 323 NITVGVMLINREYVVRAWNRRMEEWFPGIPWGKEGVRCVEICKGPVLPCEECPLPPVFAS 382 Query: 268 S-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 +E + ++ + + EG V Sbjct: 383 GKTQRREVRRHTEEGERIFSMVATPHLDDEGVIRGVVVLLEDVTAERRATEGLERYKFMV 442 Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + + S N +F D + ++ L P + Sbjct: 443 NASADFMSLISSDFRYEAVNDAFCKAHGRGREDFVGRR--VADLWGEETFRGKIL--PYI 498 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + R E L +++ P+ + ++ + + + R Sbjct: 499 RRAFEGERVVVEDR-FVFGLLGERDLEVSYNPYREGDR---ITHVAVVTRDITSYKDALR 554 Query: 446 KMEIEVMQ 453 ++E Q Sbjct: 555 RLEDARRQ 562 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 33/465 (7%), Positives = 102/465 (21%), Gaps = 42/465 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT 142 F I + + +++ K G +G R+ D+ +I + + Sbjct: 448 FMSLISSDFRYEAVNDAFCKAHGRGREDFVGRRVADLWGEETFRGKILPYIRRAFEGERV 507 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 ++ + G ++++ P +R + + D + + Sbjct: 508 VVEDRFVFGLLGE---RDLEVSYNPYREGDR-ITHVA--VVTRDITSYKDALRRLEDARR 561 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ---------------SPPPHLRMKNKVSSLTEYY 247 + K + + L + + Sbjct: 562 QAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLLSRVSPEVEEGLAIIKDSAGTLLAL 621 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + L + + E L + + + G Sbjct: 622 INDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEGLPPVVNG 681 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 P NL + S + + + + L Sbjct: 682 DPVRIRQI--LINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGIPPEKLE 739 Query: 368 TLLDAPKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + + +D++ + + + R + + + + + + + Sbjct: 740 RIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRIVLEEAE 799 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 P Q + + + + + +LE + + R Sbjct: 800 GEAAPPAKGQVSRASRAMRVLVVEDN-RVNALVARRLLEHLGHRVLVAGSG-------RE 851 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 L G D + + + + + + + Sbjct: 852 ALDLLGREEVDAVFMDVEM--PGMDGFECARRIRAGEAGERARVV 894 >gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 686 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 98/553 (17%), Positives = 203/553 (36%), Gaps = 73/553 (13%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 L A + +D+ I + G + Y N F +++Y + + + + Sbjct: 11 LHATLLKELADIKFALDQSSIVAITDAAGLIVYVNDKFCEISQYSRAELLGQ----NHRI 66 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + + R + + + + Sbjct: 67 VNSGFHPSAFFENLWQTIAGGKVWRGEIRNRA---KDGSIYWVDTTIVPFLDHRGHSYQY 123 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS---------------------------------- 456 I + + + + + +L Sbjct: 124 VSIRNDITERKRVEEALRQAKDELERRVAERTDDLSTANARLHGELAERRRAEKAIELLS 183 Query: 457 -----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-----QNTP 506 IL + +GI ++ +G + N A +++ G V ++L +PF L Sbjct: 184 HQNELILNSAGEGIVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPAY 243 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISE 563 + + L L + I G ++ + + + +T DI+E Sbjct: 244 RMSDIPLYASLIDASVHRVGSICFGR-RDGSSFPVEYVSTPILEQGQTLGAVITFRDITE 302 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + K++F++ VSHE+RTPLT+I G + + + Sbjct: 303 RQAVE--------------RLKAEFVSVVSHELRTPLTSIRGALGL-LTGGLLGPLSEKG 347 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + + ++ ++ND+LD+ ++ESGK+ L L E ++++ L+Q A + Sbjct: 348 RRMLDIAIANTDRLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGG 407 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 +++ + + AD + Q N++SNAI F+P+G + +S +V +RV D Sbjct: 408 VMLLCE--SKSAPLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAAC-DGPQVQVRVVD 464 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ +LE + F Q+ S + GTGLGL + +++V + G+ + S P KG+ Sbjct: 465 QGRGIPAEKLESIFERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGST 524 Query: 804 IEIIFPLYDTSHP 816 + PL P Sbjct: 525 FVLTLPLAVGETP 537 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 38/388 (9%), Positives = 105/388 (27%), Gaps = 34/388 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 DA G + ++++ + +++G V+ H ++ + W G+ Sbjct: 35 TDAAGLIVYVNDKFCEISQYSRAELLGQNHRIVNSGFHPSAFFENLWQTIAGGKVWRGEI 94 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ +V + +P ++ I + + K Sbjct: 95 RNRAKDGSIYWVDTTI--VPFLDHRGH--SYQYVSIRNDITERKRVEEALR--QAKDELE 148 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + + + + R K L + L ++ E Sbjct: 149 RRVAERTDDLSTANARLHGE---LAERRRAEKAIELLSHQNELI---------LNSAGEG 196 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + +N + + + F + AY L +D Sbjct: 197 IVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPAYRMSDIPLYASLID 256 Query: 328 KCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 V+ G++ + +Y S +E L ++ +++ A++ + Sbjct: 257 AS-----VHRVGSICFGRRDGSSFPVEYVSTPILEQGQTLGAVITFRDITERQAVERLKA 311 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM------PQNGIEPEDVDT 440 L +I+ P + + ++ + + +D Sbjct: 312 EFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRMLDIAIANTDRLVRLINDILDV 371 Query: 441 RINKR---KMEIEVMQLCSILEATSDGI 465 + + L +L ++D + Sbjct: 372 ERMESGKVILVRRRCDLAELLTQSADLM 399 >gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri A1501] Length = 1239 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 124/664 (18%), Positives = 259/664 (39%), Gaps = 48/664 (7%) Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 ++ F + +++ + L ++ +G + + Sbjct: 202 QSGVLLFFPLYAQAAPVTTEDERQRAFIGTLHGAFRLTDLMEGILGSRSRMLQLQLFDAA 261 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 P + + ++ + + +S PE E N + Sbjct: 262 SPDSPLLTGRAQVSADAKFQRIRNIYMYGRSWQLQVASTPEYEAVLRDNNRAFNLAAALT 321 Query: 291 TLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYA 344 S YL + R+ +LS E E + +++ P+ + + G + A Sbjct: 322 AAVLFSLLVGGYLYLRERALRSSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELA 381 Query: 345 NPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARL 400 N S L + + +L L + L R D T I + L Sbjct: 382 NQSAGQLLGGPADLLAGERVSRYVPGVLGEQILRQLRDTTQLELQAQREDGTPIPVAVSL 441 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + + + + + + +++EA Sbjct: 442 TSFRHDDALYYVINLLDLQARKRDD--------------------------ERFRNVVEA 475 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + + +++ +G I+ NR LFGY +++L +P + L + Sbjct: 476 SPNAFVLVDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDAHRGLRQGYTEHP 535 Query: 521 LRQTL--EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + + G ++ L + I + + DIS K + +L Sbjct: 536 EPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQAD 595 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 + +KS+FLA +SHE+RTPL +I+ S+ ++ G L N + + +A+ I R+G+ Sbjct: 596 QLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL-NDKQVRHADIIHRAGHE 654 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695 +L ++ND+LD++KIESG M L EP++L + + + + + A +K + + +P Sbjct: 655 LLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPL 714 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTN 750 + +D ++QI N+L+NA+ FT G Q+ ++ + ++ + L+VRD+G+G+ Sbjct: 715 TLNSDRARLQQILNNLLTNALKFTEKG-QVELTASLLPADQDGRQMLQLQVRDSGIGIAK 773 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + E+ + F QI S GTGLGL + + +V+ G+ + S +G ++ P+ Sbjct: 774 DQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLPV 833 Query: 811 YDTS 814 + Sbjct: 834 VSDA 837 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 20/273 (7%), Positives = 75/273 (27%), Gaps = 20/273 (7%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 + F F +D G + ++ + G +++G + + D Sbjct: 465 DDERFRNVVEASPNAFVL-VDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDA 523 Query: 130 NNHIGDLL----KRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + + + + + +G+ +P+++ P+ S + + ++ Sbjct: 524 HRGLRQGYTEHPEPRRMGSNRELFGLHRDGSA--LPVEIGLSPLRSGDEQLVQA----VI 577 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-L 243 + + + + K + + +++ + L Sbjct: 578 IDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL 637 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL-------PEQEDFHTINLNQYTKKQYFGTLQNNS 296 + D++ + LL L + + + +L + + Sbjct: 638 NDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMA 697 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + L+ P++ + + ++ Sbjct: 698 AQKGLSLTMEVDPAVPLTLNSDRARLQQILNNL 730 >gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891] Length = 1053 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 15/378 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + R ++ +I+E +AII+ + I+ N+ + +GY +++ + Sbjct: 150 EIELRTRDLQANEALSRTIIEGAPSSVAIIDSQQRIILWNKTAEETYGYSFDEVEGQNLC 209 Query: 499 VFLEQNTPSVMNHYLTEILSLDLR---QTLEKITLGSTKEEKLLSLR--IIIKKLPFSSC 553 L+ + P + L+ LS+D + T + ++ + I I Sbjct: 210 DLLQIDLPEELRDVLSGELSIDDQIKVSGGFFEVETYTSQGHMIPIDLGITIFLFDEQCR 269 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ + D++ K +++L+ A+ AE+ KS FLA +SHEIRTP+ AIIG S + Sbjct: 270 AAMFLRDVTSRKIVEDELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 329 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y I S +L+L I+ND+LD SKIE+GK+++ LD+ + Sbjct: 330 DLTP----KQHDYILKIHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSM 385 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 + A EK + + N+P++L D + QI +N+++NA+ FT G +I + T Sbjct: 386 VTGQKAFEKGLELIFQIDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQG-EITVHVTKK 444 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ V+DTG+GM+ + EK F Q S R GTGLGL + + +V+ Sbjct: 445 PYSEEKIELNFTVQDTGIGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELM 504 Query: 789 MGKFYIFSTPAKGTLIEI 806 G ++ S KG+ + Sbjct: 505 GGDIHVESAVGKGSQFKF 522 Score = 38.1 bits (87), Expect = 7.0, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 22/151 (14%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID+ + ++ +T G ++ G LCD+ L ID + D+L + + Sbjct: 179 IDSQQRIILWNKTAEETYGYSFDEVEGQNLCDL---LQIDLPEELRDVLSGELS---IDD 232 Query: 149 LWPIEGTNLYVPIDLA---ALPI--------YSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + G V + +PI + R + Sbjct: 233 QIKVSGGFFEVETYTSQGHMIPIDLGITIFLFDEQ-----CRAAMFLRDVTSRKIVEDEL 287 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K E+K + + Sbjct: 288 NKARSKAEEAVEVKSMFLANMSHEIRTPMNA 318 >gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1480 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 104/490 (21%), Positives = 191/490 (38%), Gaps = 19/490 (3%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 +D+ I GN+ Y N F ++ Y+ + I G + L + + Sbjct: 445 LDQHAIVAVTDLKGNITYINRRFSEISGYQEEELI----GKNHRLLNSGRHPRSFFIQMY 500 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 S A + + N + I + ++ + Sbjct: 501 SVISKGEVWNAEICNRA---KDGSYYWVDTTIVPFTNAEGKPESYIAIRTDITTRKLAEI 557 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K + + + S+LE+T +GI + + +G IL N + + L+ V+ L ++ Sbjct: 558 KTKEALSLMHSMLESTDNGILVTSLDGKILQFNESYAALWDIEVKTGLDHREFELKNRDK 617 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEW 564 + I SL E + + ++ + + +K + HDIS+ Sbjct: 618 ILDYQGVIERIASLYSEPDFEGFDILELTDGRIYERVSLPMKSDEGLLGRVWSFHDISKR 677 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + +N+L AK+ A+ KS+FLA +SHEIRTP+ ++G ++ N + Sbjct: 678 MKTQNELILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLLNNTQL----TDYQK 733 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + S +L ++ND+LD SKI++GK+ L +L + E + A K + Sbjct: 734 RRVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQAQNKSL 793 Query: 685 LIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVIL--R 740 + + D ++Q N++ NAI FT G +++I + E Sbjct: 794 ELVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSKG-EVLIEAGLRDSGDEWCFWCV 852 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG+G+ ++ F Q+ S + GTGLGL + + + G I S K Sbjct: 853 ITDTGIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSITSEVGK 912 Query: 801 GTL--IEIIF 808 GT I Sbjct: 913 GTRVEFTIYL 922 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 7/226 (3%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 L++ F + D G + I+ + G ++IG ++ H Sbjct: 435 LNNLEDQKFALDQHAIVAV--TDLKGNITYINRRFSEISGYQEEELIGKNHRLLNSGRHP 492 Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + ++ + W + +G+ +V + +P + + + I Sbjct: 493 RSFFIQMYSVISKGEVWNAEICNRAKDGSYYWVDTTI--VPFTNAEGKPESY--IAIRTD 548 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 K + E V I L + L Sbjct: 549 ITTRKLAEIKTKEALSLMHSMLESTDNGILVTSLDGKILQFNESYAALWDIEVKTGLDHR 608 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + K Y + +SL + DF ++ + T + + + Sbjct: 609 EFELKNRDKILDYQGVIERIASLYSEPDFEGFDILELTDGRIYERV 654 >gi|298244532|ref|ZP_06968338.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552013|gb|EFH85878.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 856 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 108/741 (14%), Positives = 242/741 (32%), Gaps = 64/741 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKT 147 G + +I++ ++IG D S + + Sbjct: 151 PEGLVLDINQRPLADAHLQREEVIGKPFADSPAWSHDPAVQQQLRAAIARASRGETVRFE 210 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 ++L + I + +++ G + L Sbjct: 211 ARIHPR-SDLSLDILMTITSHRDTSQQVEYLICAG--RDITERKRIEDELRTL------- 260 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + + +V + D + T+ Sbjct: 261 VDAIPHFVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQRVWDVWQTAI 320 Query: 266 ESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + +P + + + +N ++ ++ + Sbjct: 321 QRGVPYEVEHRMQDGISGAYRWFLVRGMPQRNAEGTILHWIGTCTDIDKQKQAEQRIKAS 380 Query: 323 PE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + P + G L Y N + T + + + ++ G L Sbjct: 381 EENLRVLAETVPQLVWTTRPDGRLDYCNQRYCEYT-HATFEQLQGYGW------RQFLHP 433 Query: 378 NNAIKPVMLYR---SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + L + RL Q ++ + + G Sbjct: 434 EDVERSLALRHHTLATGEPFECEHRLRNGQ--AGEYRWFLARAMPVRDETGQIVKWFGTN 491 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG---IILSTNRAVSKLFGYPVED 491 + + + + + ++ +++++ GI + EG +++ N A + GY ED Sbjct: 492 TDIEEQKRTEEALRQSQERIRALIDSNIIGI--TSNEGEEEVLVDANDAFLHMTGYTRED 549 Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + + + L E+ + +E + K+ L + Sbjct: 550 LNSRTLSRMKITPPEHAPLFQRVLQEVATHGQHTPMETELVC--KDGSRLPILAGAVTFQ 607 Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + D S K+ + + K DF++ SHE+R+PLTA+ + Sbjct: 608 DHPRQMIGFVLDNSARKELEQR--------------KDDFISMASHELRSPLTALKMHT- 652 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + ++ G + ++ N V +V +LLD+SKI++G++ E V LD + Sbjct: 653 SLLRRQLAMQGFQTSAPALSSMETQINKVTRLVEELLDVSKIQAGRLEYRQETVDLDALL 712 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E +Q IL+R + N+ +AD + Q+ N++SNAI ++P + + Sbjct: 713 REIADTMQQTHPSHSILVRGAVQANL---MADRDRLGQVFTNLISNAIKYSPGAETVEMD 769 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V +RVRD G+G+ + +K + F ++ +Q G G+GL + +V + Sbjct: 770 LEASPE-TVTIRVRDHGLGIPREQRDKIFERFYRVTGPKQKAIPGLGMGLYIVAEIVKRH 828 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + S KG++ + P Sbjct: 829 GGTITVESAVGKGSIFTVTLP 849 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 44/507 (8%), Positives = 120/507 (23%), Gaps = 34/507 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + +D + + IG + G L + L + + + + Sbjct: 29 LFLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGAPQLVSTSLYQAVQKAKQTRES-T 87 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + P + L+ + + G F P+ R + + Sbjct: 88 EVEYISPGTNSWLHAWL----------SPTNEGLSIF--FQEYLEPRSPQNAFSRNEHMY 135 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L E ++ + + P L + D + + Sbjct: 136 RDLLESFSDGVTILTPEGLVLDINQRP--LADAHLQREEVIGKPFADSPAWSHDPAVQQQ 193 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP------SLSAYFDEG 318 +++ T+ + +L + + + Sbjct: 194 LRAAIARASRGETVRFEARIHPRSDLSLDILMTITSHRDTSQQVEYLICAGRDITERKRI 253 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E+ VD P ++ N L+ + +E ++T+ + Sbjct: 254 EDELRTLVDAIPHFVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQRVW 313 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + + + N + G + Sbjct: 314 DVWQTAIQR-----GVPYEVEHRMQDGISGAYRWFLVRGMPQRNAEGTILHWIGTCTDID 368 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + +++++ L + E + +G + N+ + E + + Sbjct: 369 KQKQAEQRIKASEENLRVLAETVPQLVWTTRPDGRLDYCNQRYCEYTHATFEQLQGYGWR 428 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC---- 553 FL L+ E + + + + Sbjct: 429 QFLHPEDVERSLALRHHTLATGEP--FECEHRLRNGQAGEYRWFLARAMPVRDETGQIVK 486 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + T DI E K+ + L +++ Sbjct: 487 WFGTNTDIEEQKRTEEALRQSQERIRA 513 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 33/389 (8%), Positives = 90/389 (23%), Gaps = 29/389 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 F W G++ ++ L + ++ G + ++R + Sbjct: 267 FVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQRVWDVWQTAIQRGVPY 326 Query: 144 YGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G + Y + +P + + G K ++ Sbjct: 327 --EVEHRMQDGISGAYRWFLVRGMPQRNAEGTILHW--IGTCTDIDKQKQAEQRIKASEE 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTE 257 L E + + + + Sbjct: 383 NLRVLAETVPQLVWTTRPDGRLDYCNQRYCEYTHATFEQLQGYGWRQFLHPEDVERSLAL 442 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSA 313 ++ L + E E + +++ + + ++ Sbjct: 443 RHHTLATGEPFECEHRLRNGQAGEYRWFLARAMPVRDETGQIVKWFGTNTDIEEQKRTEE 502 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + +D I L AN +FL +T Y D + LS + Sbjct: 503 ALRQSQERIRALIDSNIIGITSNEGEEEVLVDANDAFLHMTGYTREDL--NSRTLSRMKI 560 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P + + + L + + + Sbjct: 561 TPPEHAPLFQRVLQEVATHGQHTPMETEL--VCKDGSRLPILAGAVT----FQDHPRQMI 614 Query: 432 GIEPEDVDTRINKRK----MEIEVMQLCS 456 G ++ + +++ + + +L S Sbjct: 615 GFVLDNSARKELEQRKDDFISMASHELRS 643 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 92/308 (29%), Gaps = 46/308 (14%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 F + + YAN + D P+L + + V + R Sbjct: 30 FLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGA----PQLVSTSLYQAVQKAKQTRE 85 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 I + L P N + E ++ R + Sbjct: 86 STEVE----YISPGTNSWLHAWLSPT--------NEGLSIFFQEYLEPRSPQNAFSRNEH 133 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +LE+ SDG+ I+ EG++L N+ E+++ KPF + + Sbjct: 134 MYRDLLESFSDGVTILTPEGLVLDINQRPLADAHLQREEVIGKPFADSPAWSHDPAVQQQ 193 Query: 513 LTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567 L ++ R +T+ + + L + + I +S + DI+E K+ Sbjct: 194 LRAAIARASRGETVRFEARIHPRSDLSLDILMTITSHRDTSQQVEYLICAGRDITERKRI 253 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 ++ E+RT + AI F + + N R I+Y Sbjct: 254 ED-------------------------ELRTLVDAIPHFVWIARPDGHVIYNNQRLIDYL 288 Query: 628 NYIDRSGN 635 Sbjct: 289 AIPREQVE 296 Score = 41.2 bits (95), Expect = 0.81, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + +++ + I+ N + G +D+ KP Q + + + + Sbjct: 26 PGALFLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGAPQLVSTSLYQAVQKAKQTRE 85 Query: 522 RQTLEKITLG 531 +E I+ G Sbjct: 86 STEVEYISPG 95 >gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis] gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis] gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 579 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 88/372 (23%), Positives = 170/372 (45%), Gaps = 23/372 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D R E++ +L +++E G+ +I+ G I NR+ +K F +LR+ + Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 E + + +I + ++ E + + + P L Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 HD++E K+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 E+ + I + + +V DLLD+SKIE L E + + E +L++ Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A+EK I + + + + D +KQ+ LN+++NA+ +TP GG + I+ + Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKD- 499 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D+G+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559 Query: 797 TPAKGTLIEIIF 808 +GT+ + Sbjct: 560 ELGRGTVFTVTL 571 >gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 590 Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats. Identities = 83/361 (22%), Positives = 174/361 (48%), Gaps = 25/361 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E ++ +IL +DG+ +N G ++ N A ++ + + + F L + Sbjct: 251 EEKEKMEAILTNMADGVIALNGRGEVIHINPAARRMLQLEEDQL-GQDFAEKLREIFKIN 309 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + + + L ++ L ++ + + Y L + DI++ ++ + Sbjct: 310 PEDF-------QKTEQTQLEVLVKVRDGTLKAIFAPLVGDGRVTGYILLLQDITKQQRLE 362 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + +F+A VSHE+RTPLT I ++E + + R + + Sbjct: 363 E--------------MRKEFVANVSHELRTPLTTIKSYAETLLDGALDDSSVARQ--FLS 406 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ + + +VNDLL++S++++ + N +P+ +D ++ IS + + +K + + Sbjct: 407 VINDEADRMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELEC 466 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 ++P++ AD ++Q+ NILSNAI +TP GG+I + +V + +RDTG+G+ Sbjct: 467 DLPEDLPKVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAE-NLGSQVQVSIRDTGIGI 525 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ + GTGLGL +A+ +V A+ G+ + S +GT + I Sbjct: 526 PKEDLPRIFERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKL 585 Query: 809 P 809 P Sbjct: 586 P 586 >gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3] Length = 769 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 126/506 (24%), Positives = 226/506 (44%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y+ + + ++ ++D + + +M + I Sbjct: 281 VYWSRAMYEMLGYEPQNALLSISQITAIIDPKDANFFELAQELMDSKKKYIDINV----- 335 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M + P GI + + + +++ +E Sbjct: 336 PMRHAKGYYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFVEQTAQADLRIRDAIENI 392 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E + ++ Y +I Sbjct: 393 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKIDETG- 451 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 452 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSF 504 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGF 564 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE++ FGPLG+ RY EY + I SG +L ++ND+LD+SKIE+G+ L + ++L+ Sbjct: 565 SEIMLQSTFGPLGSQRYKEYVHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEP 624 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SE I + A K+I + T+ + D R++KQI LN++SNA+ FTPSGG I Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEQKL-HANVDCRAMKQIFLNLISNAVKFTPSGGSID 683 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I N +I ++DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLE 742 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S AKGT++ II P+ Sbjct: 743 LHKGKLEITSKEAKGTIVTIIMPIQQ 768 >gi|163848601|ref|YP_001636645.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526536|ref|YP_002571007.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669890|gb|ABY36256.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222450415|gb|ACM54681.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 952 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 214/558 (38%), Gaps = 28/558 (5%) Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 ++ + + ++ + + + L + L E + Sbjct: 169 RAVASVAESDWLTVSPPWQTATYLVAIATTTLWTFGLILLVNQELVNRQHEAVQQLEQIF 228 Query: 327 DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 P + G N F ++ Y + + I G L S + + Sbjct: 229 AAQPDAVLLSRLTDGVFVKVNHGFTTISGYSADEAI----GKDALTLNLWRSPEDRRRWA 284 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + R + C + + + P I + + + + Sbjct: 285 EIMRREGACSGMEFDFR--RRDGTFRTCILSSQVVMIRGVP---HAISIVHDISERKRME 339 Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + I E T+D I + + + + ++ KL GY + L P + FL+ Sbjct: 340 EALRRSDARYRLIAENTTDVIWLYDPFKSQFTFFSPSIEKLIGYSAAEALDLPLSAFLKP 399 Query: 504 NTPSVMNHYLTEIL-----SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YS 555 ++ + L +L L ++ +++ I+ + Sbjct: 400 DSIQHVKTALDYMLHEWEGELTNAPPWTAEIDLIHRDGQIVQAEIVTSFVRDEEGQLMVL 459 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DI+ KQ + +L A++ AE + KS FLA VSHE+RTPL A++GF++++ Sbjct: 460 GVARDITARKQTEIELRLARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLMSRDDN 519 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 EY I+R+ +L ++N++LD++KIESG+ P+ + +++ +L Sbjct: 520 ---LTATQHEYLAIINRNSEHLLHLINEVLDLAKIESGRYTYTPNPLDVRRLLADLQALF 576 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K++ + + +P I++D ++ I +N+L NAI FT GG + + T Sbjct: 577 GPQAEAKQLQLIVTCEEQVPPMIVSDEAKIRHILINLLGNAIKFTH-GGSVRLR-ADTDK 634 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFY 793 +++ V DTGVG++ E +PF Q + + G GLGL ++ G Sbjct: 635 QQMYFIVEDTGVGISPLEQPYLFRPFFQGKQTANASSDTGVGLGLSISYEFARLIGGDLS 694 Query: 794 IFST-PAKGTLIEIIFPL 810 ++S +G + PL Sbjct: 695 VYSAGEGQGARFTLTLPL 712 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 34/288 (11%), Positives = 79/288 (27%), Gaps = 22/288 (7%) Query: 58 NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 NQE V+ + + +F P V + D G +++ G A + IG Sbjct: 210 NQELVNRQHEAVQQLEQIFAAQPDAVLLSRLTD--GVFVKVNHGFTTISGYSADEAIGKD 267 Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 ++ + ++++R+ G + +GT + + I S Sbjct: 268 ALTLNLWRSPEDRRRWAEIMRREGACSGMEFDFRRRDGTFRTCILSSQVVMIRGVPHAIS 327 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 IVH +R D ++ + E + F+ SP + Sbjct: 328 ------IVHDISERKRMEEALRRSDARYRLIAENTTDVIWLYDPFKSQFTFFSPSIEKLI 381 Query: 237 ---KNKVSSLTEYYAHKDDVLKT---------EKYPLLTSEESSLPEQEDFHTINLNQYT 284 + L K D ++ ++ + + D + Sbjct: 382 GYSAAEALDLPLSAFLKPDSIQHVKTALDYMLHEWEGELTNAPPWTAEIDLIHRDGQIVQ 441 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + +++ + L + + L + + Sbjct: 442 AEIVTSFVRDEEGQLM-VLGVARDITARKQTEIELRLARQQAEAANRA 488 >gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16] gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16] Length = 1319 Score = 358 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 179/383 (46%), Gaps = 12/383 (3%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + R ++K+ + IL AT + + ++ G L+ N ++FG +++I Sbjct: 454 LSQNVELQRKAEKKVLEQSQLNQEILNATPNPMYCLSPHGKYLTVNAKFCEMFGLTMQEI 513 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + +T V E+ + E + + + + + Sbjct: 514 VGRTPNEVFNASTGQVFTTVHQELRQTKGSRNYELSLCDGSSQNREMLVYEASFSNGDGE 573 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D++E KQ +N+L AK++A+ S K DFLA +SHEIRTP+ AI+G + + Sbjct: 574 ISGIVGILLDLTERKQFENELREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLA 633 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 N +P +Y I+ S +L I+ND+LD SKIE+GK+ + SLDE Sbjct: 634 LNTEL----DPSQKKYLTRINESAKNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDN 689 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +++V A+EK + +P ++ D + Q+ +N+ SN++ FT G +I++S Sbjct: 690 LVNVVSYKAHEKGVEFLLDIDPKVPIGLVGDPLRLGQVLVNLCSNSVKFTEKG-EIVVSA 748 Query: 730 THTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + V+DTG+G+ +++ + F Q +S + GTGLGL ++K +V Sbjct: 749 LVEQLDENRATIRFSVKDTGIGIAKEKIQHLFRAFSQADSSITRQFGGTGLGLSISKQLV 808 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 + G+ + S+ G++ Sbjct: 809 ELMGGELVVSSSEGTGSVFSFTI 831 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 41/143 (28%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + HG ++ + + G +++G +V + + L++ Sbjct: 486 MYCLSPHGKYLTVNAKFCEMFGLTMQEIVGRTPNEVFNASTGQVFTTVHQELRQTKGSRN 545 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G++ + + + + E SG GI+ + + Sbjct: 546 YELSLC-DGSSQNREMLVYEASFSNGDGEISGI--VGILLDLTERKQFENELREAKELAD 602 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 603 AMSQAKGDFLANMSHEIRTPMNA 625 >gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 810 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 120/412 (29%), Positives = 199/412 (48%), Gaps = 20/412 (4%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E + +E V+ R EV +L I T++G+ I +R+G + N +++ Sbjct: 239 ERQLREAVESRAVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEGFTRIC 298 Query: 486 GYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY +ED+ K P V NT + + + + L T + + +K + +RI Sbjct: 299 GYTIEDLRGKKPGDVLQGPNTNPMAIQRIGDAIRQGLPVT--EEVVNYSKNGREYYIRIE 356 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVS 593 I L + DI+E Q + +L + E+ + K+DFLA +S Sbjct: 357 IDPLRDERGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESANRAKTDFLANMS 416 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 HEIRTP+TAI+G++E++ + IE I R+G+ +L+I+ND+LD+SKIE+ Sbjct: 417 HEIRTPMTAILGYTELLAENSDPAGTTSAERIECIETIRRNGDHLLEIINDILDLSKIEA 476 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711 G M + P L V + SL+Q A K I +R + +P I D +KQI +N+ Sbjct: 477 GMMTVEKIPTDLAYLVKDVESLMQFKATRKGINLRLNLVEPLPTIIHTDPVRLKQILVNL 536 Query: 712 LSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 L NAI FT G ++ + +N +++ V DTG+GMT ++ + F Q S Sbjct: 537 LGNAIKFTEHG-EVSMKVHTDANTFPGLIVIDVVDTGIGMTPQQMSQLFGAFVQADTSTT 595 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + GTGLGL ++K++ G I S P KG++ ++ PH+ + Sbjct: 596 RKFGGTGLGLRISKSLAQLLGGNITISSEPGKGSVFQLTISTGLAEAPHEVV 647 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 10/183 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146 D G ++ I+E + G + G + DV + +P IGD +++ + Sbjct: 281 TDRKGRVEWINEGFTRICGYTIEDLRGKKPGDVLQGPNTNPMAIQRIGDAIRQGLPVTEE 340 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G Y+ I++ P+ E SGF + + + L + Sbjct: 341 VVNYSKNGREYYIRIEID--PLRDERGEISGFMA-----IESDITEQHQHQEELKRHAEE 393 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ S + K D + S M + TE A D T + E Sbjct: 394 MERLRNAAESANRAKTDFLANMSHEIRTPMTA-ILGYTELLAENSDPAGTTSAERIECIE 452 Query: 267 SSL 269 + Sbjct: 453 TIR 455 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 9/178 (5%) Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 L+ +E+ E + + E L G + + N Sbjct: 234 ASKRLERQLREAVESRAVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEG 293 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F + Y ++D+ L P + + R + + + N Sbjct: 294 FTRICGYT-IEDLRGKKPGDVL-QGPNTNPMAIQRIGDAIR---QGLPVTEEVVNYSKNG 348 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLCSILEATS 462 + ++ E IE + + ++ +++ E+ +L + E+ + Sbjct: 349 REYY-IRIEIDPLRDERGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESAN 405 >gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1195 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 99/509 (19%), Positives = 199/509 (39%), Gaps = 28/509 (5%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + S+ +E + +D I G+ N S+ Y ++D++ Sbjct: 324 ASDESIRKLNEELDRFFSMALDMLCIA---DLDGHFKRLNRSWEETLGY-ALDELTGKQF 379 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + + A+ + + ++ + + + + P Sbjct: 380 LEFIHPDDIPATLAALSDLDANKQ------ILNFINRYRCKDGSYRWIEWR------STP 427 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + + +E + + + + +R+ N A + F Sbjct: 428 CANLIYAAARDITERKNAEAALEESERFMRVLTDIIPGMVGYWDRDLHNRFANIAYLEWF 487 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G E + + + Y+ L RQ E+ + I Sbjct: 488 GKTSEQMRGIHIRDLMGDELFAKNEPYMRAAL-NGERQRFERTLTKADGSIGYTWAHYIP 546 Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + + DI+E K + +L K AE + KS+FLA +SHEIRTP+ AI+ Sbjct: 547 DIANGQVRGFFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAIL 606 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G + ++ +PR ++ + + +++I+ND+LD SKIE+G++ + P+S+ Sbjct: 607 GLTRLVLETEL----DPRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPISV 662 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 +E V + L + EK + A+++P +L D + Q+ N++ NA+ FT SG Sbjct: 663 EEVVRNTMGLFRAKIEEKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFTESG- 721 Query: 724 QIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I I + + V+DTG+G+ E + + F Q ++ + GTGLGL Sbjct: 722 EIRIMVEQIQEDCRTVTLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGLT 781 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + +V G + S G+ + Sbjct: 782 ICQRLVGLMGGSISVSSLKGVGSTFSFVI 810 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 42/377 (11%), Positives = 98/377 (25%), Gaps = 41/377 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148 D G+ K ++ +T+G ++ G + + I + DL + Sbjct: 351 DLDGHFKRLNRSWEETLGYALDELTGKQFLEFIHPDDIPATLAALSDLDANKQILNFINR 410 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ Y I+ + P + + + A + ++ L Sbjct: 411 YRCKDGS--YRWIEWRSTPCAN--------LIYAAARDITERKNAEAALEESERFMRVLT 460 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 +I G L + + + L+ E + Sbjct: 461 DIIPGMVGYWDRDLHNRFANIAY-----------LEWFGKTSEQMRGIHIRDLMGDELFA 509 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E +N + ++ + ++ + F + E K Sbjct: 510 KNEPYMRAALNGERQRFERTLTKADGSIGYTWAHYIPDIANGQVRGFFVLVSDITEL--K 567 Query: 329 CPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 AN + FL ++ + GL+ L+ +L + Sbjct: 568 LTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAILGLTRLVLETELDPRQRDFLLK 627 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 +Y + + + + + + +P M Sbjct: 628 VYNASQALMEILNDILDYSKIEAGRVEIEQLPISVEEVVRNTMGLF-------------- 673 Query: 446 KMEIEVMQLCSILEATS 462 + +IE L +I+E S Sbjct: 674 RAKIEEKGLATIMELAS 690 >gi|296121904|ref|YP_003629682.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296014244|gb|ADG67483.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 895 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 125/805 (15%), Positives = 262/805 (32%), Gaps = 97/805 (12%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMI 114 Q +VS+ P+ + W DA ++ + G + + Sbjct: 123 SQQVPAVSSCEPPACSTGSPCIPLIEQLPIIAWAADARNNCTYVNTFWHQFTGAAHHEHL 182 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G + ++ I + Q T + + +G ++ + P +++ + Sbjct: 183 GQGWLNFIHPEDLE---RIRSADENQATSDLQYRIRRKDGE-YRWFLEFS-KPCVNQDGQ 237 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS--SVEKEKYDIFSQQSPP- 231 G+ G I + K+ + E G + ++E + Sbjct: 238 IDGYTGICI--DTTESLRESRVSVERKKQLRAMVEHAPGVAIQWFDREGRIQLWNAASTQ 295 Query: 232 -PHLRMKNKVSSLTEYYAHKDDV---LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + + + H L ++ + +S P + FH + + T Sbjct: 296 MFGFTAEEAIGKTYDELIHTPAEFACLLKTLDEIVQTGQSIGPNEYQFHRKDGSTGTCLS 355 Query: 288 YFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---- 340 + ++ ++ + E E P F+ Sbjct: 356 TLFCIPSHDEQPLFCCMDIDITERIQTENALRESEAKFRTLAKNFPDAIFILDPDESQLP 415 Query: 341 --LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY----------- 387 + +AN + + Y+ + I L+ +D +D + L Sbjct: 416 LKIAFANDAVRTIHGYQPEELIGQ--SLAKKIDDAPTADQVPERISRLRKGEVLRFDATH 473 Query: 388 -RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 D I S I W+ + L GI + + + Sbjct: 474 IHRDGHTIPMSVTACMISWDGKTML-------------------LGINRDMSLQKAAEEA 514 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + S +++ G+AI++ +G L N A+ + GY +E++ F Sbjct: 515 QRESEARFRSAFYSSATGMAIVSLKGEFLDANTALCSMLGYSLEELTSTSFPAITHPTEV 574 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 H + ++ ++ ++ + + I + S + M D+S Sbjct: 575 DRDIHAMKRLIRGEIP-FYTTEKRYRRQDGSYVPIYISAALVRNSHGDPAYFVSQMLDLS 633 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + +L ++++ + +SH+ ++ I+G+ E + P + Sbjct: 634 EKKRLEQELIQNQRLSV-----MKQMASGLSHDFNNLISVILGYCETLL---IRPDTTDQ 685 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 I +G+ ++ L+ S+ K + FE ++L+ + +V+ + Sbjct: 686 QRSLILPIREAGHHASRMIRQLIAFSR----KQPVAFERINLNSIIRSMEMMVRGIL-RQ 740 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----------- 731 ++ A +P I+AD + QI +N+ NA P GG I T Sbjct: 741 NFVLDLRLAELLPNIMADPVQIDQILVNLAINARDAMPEGGTFAIKTEWVSSHADHPQSI 800 Query: 732 -------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +N+ V + V DTG G+ + + +PF G+G GLGL + + Sbjct: 801 RTTETVVQANDLVRITVSDTGTGIPKDLIPRIFEPFFTTKG----EGQGHGLGLSVVHGI 856 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+ G +FS P KGT EI P Sbjct: 857 VNQAGGTIRVFSEPGKGTTFEIDLP 881 Score = 138 bits (347), Expect = 5e-30, Method: Composition-based stats. Identities = 62/587 (10%), Positives = 162/587 (27%), Gaps = 63/587 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + + E + G + G ++ ++ W G Sbjct: 30 LDADGRVIYANAEYFRIFGCPPRRSEGSPWLQRFQNHNL---------MEATRQWEGVQH 80 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF---- 204 IEG D + + I R + G + + + + Sbjct: 81 DEEIEGEQTEQTYDGSRVFIRYRFCQLHRVNGDSTLRLFVRYSQQVPAVSSCEPPACSTG 140 Query: 205 ---SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E + + + + L + + + E+ Sbjct: 141 SPCIPLIEQLPIIAWAADARNNCTYVNTFWHQFTGAAHHEHLGQGWLNFIHPEDLERIRS 200 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDE 317 +++ Q + ++ N + Y S E Sbjct: 201 ADENQATSDLQYRIRRKDGEYRWFLEFSKPCVNQDGQIDGYTGICIDTTESLRESRVSVE 260 Query: 318 GENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + V+ P + G + N + + + + + I L+ P Sbjct: 261 RKKQLRAMVEHAP-GVAIQWFDREGRIQLWNAASTQMFGFTAEEAIGKTY--DELIHTPA 317 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TFIPFEKANQFPENMPQNGI 433 + ++ ++ + H + + + T ++ P + Sbjct: 318 EFACLLKTLDEIVQTGQSIGPNEYQFH--RKDGSTGTCLSTLFCIPSHDEQPLFCC---M 372 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYP 488 + + + + + + ++ + D I I++ + I N AV + GY Sbjct: 373 DIDITERIQTENALRESEAKFRTLAKNFPDAIFILDPDESQLPLKIAFANDAVRTIHGYQ 432 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 E+++ + + + + I L + L ++ + + + + Sbjct: 433 PEELIGQSLAKKI--DDAPTADQVPERISRLRKGEVLRFDATHIHRDGHTIPMSVTACMI 490 Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE----------SSHKSDFLARVSHEI 596 + D+S K + ++ S K +FL + Sbjct: 491 SWDGKTMLLGINRDMSLQKAAEEAQRESEARFRSAFYSSATGMAIVSLKGEFL-----DA 545 Query: 597 RTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 T L +++G+S E + + F + +P ++ I + ++ Sbjct: 546 NTALCSMLGYSLEELTSTSFPAITHPTEVD--RDIHA----MKRLIR 586 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 R + S LE G +++ +G ++ N ++FG P P+ + Sbjct: 5 EHRSSLDFLADYKSFLETVPAGAELLDADGRVIYANAEYFRIFGCPPRRSEGSPWLQRFQ 64 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + + +E T + + +R +L + Sbjct: 65 NHNLMEATRQWEGVQHDEE---IEGEQTEQTYDGSRVFIRYRFCQLHRVNG 112 >gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri DSM 4166] Length = 1239 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 113/529 (21%), Positives = 226/529 (42%), Gaps = 43/529 (8%) Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + R+ +LS E E + +++ P+ + + G + AN S L + Sbjct: 337 RERALRSSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAGQLLGGPADLL 396 Query: 360 IEIAGG--LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTF 415 + +L L + L R D T I + L + + + + Sbjct: 397 AGERVSRYVPGVLGEQILRQLRDTTQLELQAQREDGTPIPVAVSLTSFRHDDALYYVINL 456 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + +++EA+ + +++ +G I+ Sbjct: 457 LDLQARKRDD--------------------------ERFRNVVEASPNAFVLVDTQGSIV 490 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGST 533 NR LFGY +++L +P + L + + + + G Sbjct: 491 MVNRQTELLFGYTRQELLGQPVELLLPEALRDAHRGLRQGYTEHPEPRRMGSNRELFGLH 550 Query: 534 KEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 ++ L + I + + DIS K + +L + +KS+FLA Sbjct: 551 RDGSALPVEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLAN 610 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL +I+ S+ ++ G L N + + +A+ I R+G+ +L ++ND+LD++KIE Sbjct: 611 MSHELRTPLNSILILSDQLRQNGAGNL-NDKQVRHADIIHRAGHELLQLINDVLDLAKIE 669 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 SG M L EP++L + + + + + A +K + + +P + +D ++QI N Sbjct: 670 SGHMQLKLEPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNN 729 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +L+NA+ FT G Q+ + + ++ V L+VRD+G+G+ + E+ + F QI Sbjct: 730 LLTNALKFTEKG-QVELMASLLPADQDGRQMVQLQVRDSGIGIAKDQQERIFQAFQQIDG 788 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 S GTGLGL + + +V+ G+ + S +G ++ P+ + Sbjct: 789 SISRHYGGTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLPVVSDA 837 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 20/273 (7%), Positives = 75/273 (27%), Gaps = 20/273 (7%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 + F F +D G + ++ + G +++G + + D Sbjct: 465 DDERFRNVVEASPNAFVL-VDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDA 523 Query: 130 NNHIGDLL----KRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + + + + + +G+ +P+++ P+ S + + ++ Sbjct: 524 HRGLRQGYTEHPEPRRMGSNRELFGLHRDGSA--LPVEIGLSPLRSGDEQLVQA----VI 577 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-L 243 + + + + K + + +++ + L Sbjct: 578 IDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL 637 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL-------PEQEDFHTINLNQYTKKQYFGTLQNNS 296 + D++ + LL L + + + +L + + Sbjct: 638 NDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMA 697 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + L+ P++ + + ++ Sbjct: 698 AQKGLSLTMEVDPAVPLTLNSDRARLQQILNNL 730 >gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1208 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 108/615 (17%), Positives = 223/615 (36%), Gaps = 30/615 (4%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 KF + + + E + P ++ ++ + + L Sbjct: 189 PKFPSIPAVAIASPATESDTSQTLQF----PIQDRNSRTIGTLHVQHYQPTIDQELATKL 244 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + + T+ N +E + E Sbjct: 245 TRIFAARAAAEIERKRALDELAWANNQLETINNQLEEKVAARTQALKTVNET-LRSSEAR 303 Query: 322 TPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V P + + + + +T Y + D + + P+ Sbjct: 304 YRSLVLNIPGAVYRCLPDAQWTMEFLSNGIEPITGYPATDFLHNQVRAFGDIIHPEDYPR 363 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 L + T RL + +N + + + G+ E Sbjct: 364 VLASLGTLTPDNPTYTD-EYRLVRV---DQNICWVFEQGRGIFDATGHLIRLEGVMIEVT 419 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D ++ + ++ E QL +++ +A+++++ ++ + + + ++ + Sbjct: 420 DRKLASQALDQERRQLRQLIQNMPVAMAMLDKKLCYVAHSHQWLVDYQLGEKTLVGRSHR 479 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556 N +L L + E + +++ L + + + Sbjct: 480 EVFV-NLQEDYQQHLQTALGGQVITCEEDCYVQHDGKKQYLKWTVQPWYHRENQVGGVVI 538 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +I N L ++ A S KS FLA +SHEIRTP+ I+G +E+++ + Sbjct: 539 VTQNI-------NDLVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL- 590 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 NP+ ++ + +S N +L ++ND+LD SK+E+G+M L P+ + + V L+ Sbjct: 591 ---NPQQQDFIKTLSQSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLA 647 Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A K++ + T+ + + D ++QI N++ NAI FT G +I + +E Sbjct: 648 IQAQTKQVELITTIDPQLGGTVTGDSMRLRQILTNLVGNAIKFTHRGSVVIRALPMAEDE 707 Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V V DTG+G+ + K + F Q+ S GTGLGL +AK +V G Sbjct: 708 ASVLVKFEVIDTGIGIDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDI 767 Query: 793 YIFSTPAKGTLIEII 807 + S+P +G+ Sbjct: 768 GLESSPGQGSTFWFT 782 >gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix orenii H 168] Length = 594 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 171/389 (43%), Gaps = 27/389 (6%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 N+ +++ +I + E + ++ + DG+ + + E I N A Sbjct: 227 NELGTLAHSFNYMANELERKIEEIFREKSRTE--AVFTSIVDGLIVTDNEKKITMVNPAA 284 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 K+ G +L + + + + SL+ ++ L++ T K++ L Sbjct: 285 RKILGLNKG-VLGRDIIEVIRHHKVDQLLE-----TSLEKKKILKEELNFQTPGSKIIRL 338 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + D++E ++ + + +F+A VSHE++TP Sbjct: 339 NFAPIENKEGQVAGGLIVLTDVTELRRLE--------------QLRKEFVANVSHELKTP 384 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT+IIG+ + I + + + + I + + ++ DLLD+SK+E+ + + Sbjct: 385 LTSIIGYIDTIIDNDI--KDDTTIKRFLSIIKDEADRLYLLIKDLLDLSKLEAKRGEVIL 442 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 +P L++ V + ++Q A K I ++ +P + ++Q+ +N++ N I +T Sbjct: 443 QPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPFVYLIPEQIEQVLINLVDNGIKYT 502 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 GG++I+ + N V++ V D G+G+ + + + F ++ ++ GTG+GL Sbjct: 503 EPGGRVILR-AYEENNRVVVEVEDNGIGIPEEDQGRIFERFYRVDKARSRSMGGTGIGLS 561 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + K ++ + + + S P KG+L Sbjct: 562 IVKHIIKNHDSEIKVESEPGKGSLFRFYL 590 >gi|284035081|ref|YP_003385011.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814374|gb|ADB36212.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1178 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 113/745 (15%), Positives = 243/745 (32%), Gaps = 54/745 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 D G+L E++ +G A ++ + + + ++LK+ Q + Sbjct: 461 DRKGFLLEVNHAFQDVMGYSASELKTIPFLQLIHP--AEKAMVSTEVLKKSQQEPVRNRI 518 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W + + I+ +A+ G +G +L ++ Sbjct: 519 NKWRCKDGTYRI-IEWSAI-------GVDGLV-YGSARDITDRQAAEDQLYQLHERLQLA 569 Query: 208 HEIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + ++ +R L+ + L + + Sbjct: 570 TKAAGQGIWENDLINGKVIWDERLWELHGLTLPVRPLTFADFLSFVHPDDLPALMAKAHT 629 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317 L +E ++ N + ++++S ++ + + +E Sbjct: 630 ELVGKEDAVTNVYRIVCPNGMVRYLETNGRIIRDSSGKAIRLIGVAWDVTRRKLDEENLR 689 Query: 318 -GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E VD F G Y NP++ ++T + + + LD+ Sbjct: 690 TSEQRYRSLVDHLDTIVFQTDAKGKWVYLNPAWEVVTGFSVEESLGG-----YFLDSILP 744 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D+ + + + + I+ + M G Sbjct: 745 EDHTETRQLFEEIKAGQRMGVRHTIRYIRK-GGGYRWIDVNAQVLLRDGHVRMGVTGTLT 803 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR 494 + + ++ + ++ + I E + I++ + L N A K G +I R Sbjct: 804 DITERKMAEEAIQESEQRFREIAENVDEVFCILDSKKPRFLYVNPAFEKFTGVSSPEIYR 863 Query: 495 KP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 F + + S++ +S E ++ L L + + + Sbjct: 864 NSSLFLPRIVEEDRSLIQTIFQNSVSGS-----ELTFRARHQDGSLRWLNARVFGVTNEA 918 Query: 553 CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+ +++ L + + ++ KS F+ SHE RTPL I +E Sbjct: 919 GVLIRRIGVATDITTAIEKEQILEASLQNERTLNTLKSQFITTASHEFRTPLMGISSSTE 978 Query: 609 ----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + + P+ P ++ I + +++ D L +SKIE GK+++ L Sbjct: 979 LVKHYMAREDIRPVL-PIINKHLTAILTKVASLNELIGDTLTLSKIEQGKIDVQLTSTDL 1037 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 ++ + +KR I +L D + + I N+L NAI F+ Sbjct: 1038 AALCKSLVASTSADSKDKR-QIDFQVIGKDVALLVDKKLINHILTNLLMNAIKFSTKSVS 1096 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + ++ T V + V D G+G+ +L F + N+ +G+GLGL + + Sbjct: 1097 LTLTYGLTD---VKIAVSDQGIGIPKKDLPHLFDKFFRAGNATN--YQGSGLGLAICQEY 1151 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 ++ G+ + S GT I P Sbjct: 1152 INLMQGQIGVASKEGAGTTFTITLP 1176 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 41/523 (7%), Positives = 139/523 (26%), Gaps = 36/523 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSD---------ILHIDPNNHIGDL 136 ++ G ++ +++ +G A ++IG + + + ++ Sbjct: 321 TNSDGIVQTVNQATETLLGFSASELIGKVARLKSESTHSSLPVITFSPYDSEEVHNFFAQ 380 Query: 137 --LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + + L G V + ++ L + + G+ G I Sbjct: 381 PTVAEYGYVQQECLLATRNGRLAPVLLTVSQL--KNEDGSVLGYMG--IATDISALKLAE 436 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHK 250 A ++ ++ + K + + + K + Sbjct: 437 AKLRQKNQILDTFFAGALDMHCIADRKGFLLEVNHAFQDVMGYSASELKTIPFLQLIHPA 496 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + + + + +E + + + + + + + Sbjct: 497 EKAMVSTEVLKKSQQEPVRNRINKWRCKDGTYRIIEW--SAIGVDGLVYGSARDITDRQA 554 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + +G + + L + + Sbjct: 555 AEDQLYQLHERLQLATKAAGQGIWENDLINGKVI-WDERLWELHGLT----LPVRPLTFA 609 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + D+ + A ++ I + + + + Sbjct: 610 DFLSFVHPDDLPALMAKAHTELVGKEDAVTNVYRIVCPNGMVRYLETNGRIIRDSSGKAI 669 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 G+ + ++++ + + S+++ + + +G + N A + G+ Sbjct: 670 RLIGVAWDVTRRKLDEENLRTSEQRYRSLVDHLDTIVFQTDAKGKWVYLNPAWEVVTGFS 729 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 VE+ L F + + EI + R + K + + + L Sbjct: 730 VEESLGGYFLDSILPEDHTETRQLFEEIKA-GQRMGVRHTIRYIRKGGGYRWIDVNAQVL 788 Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + T+ DI+E K + + +++ + + + + Sbjct: 789 LRDGHVRMGVTGTLTDITERKMAEEAIQESEQRFREIAENVDE 831 Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 56/435 (12%), Positives = 121/435 (27%), Gaps = 59/435 (13%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--------YAHKDDV 253 + + + + S P + N++ SL E D Sbjct: 34 ELVDLQRRMAAPSTPSDYLAGTCLSDWVAPSAGAVLNRLWSLLEQGTVCRLTYQPAPDQT 93 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + P+ L I+++ ++ G + R ++ Sbjct: 94 SQLLITPMEGGYLVELLADNPADAISVSTESEIVSVGQTIEQRTDYSAQAGARGLSKQAS 153 Query: 314 YFDEGENLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDDIEIAG 364 D L V P+ + + + NP+ L Y I Sbjct: 154 SLDATNQLLEAIVSNTPVGLALLRPVWQSGCLIDFSYLWTNPAHAALIGYS----IIQLA 209 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G P + + + +Q + + I N Sbjct: 210 GQRFKALHPSAASAGLFDRLADVAQTGQSLHYQ---KQVQHDGLSLWGEFTIIRVGENVL 266 Query: 425 PENMPQNGIEPEDVDTRINKRKMEI-------EVMQLC----SILEATSDGIAIINREGI 473 M + + R ++E +V QL +IL+ I N +GI Sbjct: 267 FTVMDISPLMEAKALLRKKNSQLEKGIAERTKQVRQLSTLQNAILKHAGQAIISTNSDGI 326 Query: 474 ILSTNRAVSKLFGYPVEDILRK------------PFTVFLEQNTPSVMNHYLTEILSLDL 521 + + N+A L G+ +++ K + ++++ + ++ Sbjct: 327 VQTVNQATETLLGFSASELIGKVARLKSESTHSSLPVITFSPYDSEEVHNFFAQ-PTVAE 385 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 +++ L +T+ +L + + + +L Y DIS K + KL Sbjct: 386 YGYVQQECLLATRNGRLAPVLLTVSQLKNEDGSVLGYMGIATDISALKLAEAKL------ 439 Query: 578 AEKESSHKSDFLARV 592 +++ F A Sbjct: 440 -RQKNQILDTFFAGA 453 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 21/251 (8%), Positives = 63/251 (25%), Gaps = 8/251 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWY 144 + DA G ++ G + +G D + + +K Sbjct: 706 VFQTDAKGKWVYLNPAWEVVTGFSVEESLGGYFLDSILPEDHTETRQLFEEIKAGQRMGV 765 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 T + +G ID+ A + G G + + +++F Sbjct: 766 RHTIRYIRKGGGYR-WIDVNAQVLLRDGHVRMGVTG--TLTDITERKMAEEAIQESEQRF 822 Query: 205 SHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + E ++ +K + +++ ++ + T Sbjct: 823 REIAENVDEVFCILDSKKPRFLYVNPAFEKFTGVSSPEIYRNSSLFLPRIVEEDRSLIQT 882 Query: 264 SEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 ++S+ E + + + N + + + + ++ Sbjct: 883 IFQNSVSGSELTFRARHQDGSLRWLNARVFGVTNEAGVLIRRIGVATDITTAIEKEQILE 942 Query: 321 LTPETVDKCPI 331 + + Sbjct: 943 ASLQNERTLNT 953 >gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120] Length = 559 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 105/435 (24%), Positives = 189/435 (43%), Gaps = 39/435 (8%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREG 472 + + + M + ++ + + ++E ++ I +++ Sbjct: 118 SLNSALRQARSQAQMNARVAQQNYERLLQSQYNLRRSEERYRLLVEGVTNYAIFMLDSNA 177 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLG 531 + N ++ GY +I+ +PF + ++L L + + Sbjct: 178 NFTTWNIGAERILGYQEAEIIGQPFELIFAPEAIERGQP--QQVLKQALTEGFSRENRWH 235 Query: 532 STKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK-------LSHAKKIAEK 580 K+ +I L +S M DI+E KQ + + A+ AE Sbjct: 236 IRKDGTFFWAHCLITPLRDENGNLRGFSKIMQDITERKQAEEEKEQLLLREQAARAEAEA 295 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + K DFLA VSHE+RTP+TAIIG++ +++ G L R I+R+ NL + + Sbjct: 296 ANRSKDDFLAIVSHELRTPMTAIIGWAGMLQT---GALDEARASLALETIERNANLQMQL 352 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 + DLLDIS+I G+++L + V L E +++AI +VQ A+ K I I++ +I +I D Sbjct: 353 IEDLLDISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGD 412 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------------------EEVILR 740 + Q+ LN+L+NAI FTP+GG+I + + ++ Sbjct: 413 SDRLLQVVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQ 472 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799 V DTG G++ L + F Q +S +G GLGL +A+ +V+ + G S Sbjct: 473 VIDTGQGISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIG 532 Query: 800 KGTLIEIIFPLYDTS 814 +G + P+ + S Sbjct: 533 QGATFTVKLPITEES 547 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 35/365 (9%), Positives = 92/365 (25%), Gaps = 42/365 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142 + +D++ + + +G ++IG + I+ P + L + Sbjct: 170 IFMLDSNANFTTWNIGAERILGYQEAEIIGQPFELIFAPEAIERGQPQQVLKQALTEGFS 229 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W I + P+ N GF I+ ++L Sbjct: 230 REN---RWHIRKDGTFFWAHCLITPLRDENGNLRGFSK--IMQDITERKQAEEEKEQLLL 284 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + + + I S + P + + + + A + + Sbjct: 285 REQAARAEAEAANRSKDDFLAIVSHELRTPMTAII-GWAGMLQTGALDEARASLALETIE 343 Query: 263 TSEESSLPEQEDFHTINLNQYTK--------------KQYFGTLQNNSKESFEYLSHRNH 308 + + ED I+ + +Q+ + + R Sbjct: 344 RNANLQMQLIEDLLDISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPD 403 Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA-------------NPSF-----L 349 S+ + + + L ++ F + G + N Sbjct: 404 TSIDKIWGDSDRLLQVVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSC 463 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + Y + I+ G+S + + + H ++ + Sbjct: 464 PIPHYAQIQVIDTGQGISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGT 523 Query: 410 SLAMT 414 A + Sbjct: 524 IQAQS 528 >gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB] gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB] Length = 1439 Score = 358 bits (920), Expect = 2e-96, Method: Composition-based stats. Identities = 112/566 (19%), Positives = 200/566 (35%), Gaps = 32/566 (5%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 T P + + +E + ++ T + L+ + L Sbjct: 391 TTDAPWREVIQLAAALEEMRQHLQSSRRTLEDTNIELELKVAKRTLALRQNQEI-----L 445 Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E D + NP+F + L+ Sbjct: 446 QKREAFFRAIFDNAAVGIISLDPERKPVLVNPAFAKFIDQPINTLLSH-------LENIA 498 Query: 375 LSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L + L + I N + ++ E Sbjct: 499 LPKEVLGRINDLLGQTGSAQQQSLRNEFEFIDKNGDT-HWGDVQIAAVRDENGELDSLLI 557 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + D R + ++ + L ++L+ + I L N+A FG + Sbjct: 558 TVLDVSDRREIEAELIRQFSFLQALLDTIPNPIFYKGANTHFLGCNQAYEAFFGINRREF 617 Query: 493 LRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---- 546 + K L ++T +++ + + + KL + + Sbjct: 618 VGKRVVDLEYLPEDTRQAYQTEDEQVIEAG--SRISREVSLPGADGKLHDVLYSVSGFHS 675 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DI+ K+ + + A+ AE ++ K+DFLA +SHEIRTP+ AIIG Sbjct: 676 PDGRPDGLIGVIVDITALKEAEREADRARATAESAAAAKADFLANMSHEIRTPMNAIIGM 735 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + + N R Y +D + +L I+ND+LD+SKIE+G M+ P SLD Sbjct: 736 THLALQTEL----NSRQKNYLTKVDNAAKGLLGIINDILDLSKIEAGMMHFEHAPFSLDA 791 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-Q 724 ++ + L A E+ + + A +P +++ D + Q+ LN++ NAI FT +G Sbjct: 792 SLERLSDMCSLKARERGLELLYDIAPEVPDQLIGDSLRLGQVLLNLVGNAIKFTEAGEIT 851 Query: 725 IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + EV V DTG+GM + + F Q S + GTGLGL + K Sbjct: 852 VTVKLLANRENEVDLGFEVIDTGIGMNVEQQSQLFSAFTQADTSTTRKYGGTGLGLSICK 911 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 +V+ G + S P G+ Sbjct: 912 RIVELQGGSIGVSSQPGIGSRFTFQL 937 Score = 41.2 bits (95), Expect = 0.78, Method: Composition-based stats. Identities = 22/244 (9%), Positives = 52/244 (21%), Gaps = 18/244 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTW 143 +D ++ K I ++ L +++ + I DLL +Q + Sbjct: 466 LDPERKPVLVNPAFAKFIDQPINTLL-SHLENIALPKEV--LGRINDLLGQTGSAQQQSL 522 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + G + + +AA + N E V + A R Sbjct: 523 RNEFEFIDKNGDTHWGDVQIAA--VRDENGELDSL--LITVLDVSDRREIEAELIRQFSF 578 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVLKTE 257 L + + K EY Sbjct: 579 LQALLDTIPNPIFYKGANTHFLGCNQAYEAFFGINRREFVGKRVVDLEYLPEDTRQAYQT 638 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + S + + + + + + + + Sbjct: 639 EDEQVIEAGSRISREVSLPGADGKLHDVLYSVSGFHSPDGRPDGLIGVIVDITALKEAER 698 Query: 318 GENL 321 + Sbjct: 699 EADR 702 >gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802] Length = 1193 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 101/433 (23%), Positives = 184/433 (42%), Gaps = 36/433 (8%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + E + + + + + + T+DGI + + Sbjct: 526 RVEERTEELSRLNQNLTEEILQRQEIEADLRESESRYHLAVSGTNDGIWDWDLRTNKVYY 585 Query: 478 NRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + K+ GY + + ++ + + + L + E ++ Sbjct: 586 SPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHL-DGKTEVYENSHRIKHRD 644 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + K L T+ DI++ K+ + L AK+ AE + KS+FLA Sbjct: 645 GHYIWIEAKGKCLRNQEGHPLRLVGTITDITQKKEAQEALRKAKESAEIANRAKSEFLAN 704 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ AI+GF E+++ G + +PR Y N I SG ++L ++ND+LD+SKI+ Sbjct: 705 MSHEIRTPMNAILGFCELLQ----GIIDDPRSRSYLNSIASSGKILLALINDILDLSKID 760 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 SGK+ +++EP+ L + E + A +K++ + A++IP I+ D ++QI N Sbjct: 761 SGKLQINYEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFN 820 Query: 711 ILSNAIHFTPSGG-QIIIST--THTSNEE---------------------VILRVRDTGV 746 +L NA+ FT G +I + N E + + V DTG+ Sbjct: 821 VLGNALKFTHEGAVKIAVKATKKLPENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGI 880 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q + GTGLGL + + + G ++ S KG+ Sbjct: 881 GIAPEQQDYIFDAFTQSEGQSTRKYGGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTF 940 Query: 807 IFPLYDTSHPHDC 819 FP + HD Sbjct: 941 YFPNVSFAETHDI 953 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 34/145 (23%), Gaps = 4/145 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W+ D S K +G + + D +D T Sbjct: 573 IWDWDLRTNKVYYSPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHLDGKTE 632 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + Y+ I+ + ++ R G + + + ++ + Sbjct: 633 VYENSHRIKHRDGHYIWIEAKGKCLRNQEGHP--LRLVGTITDITQKKEAQEALRKAKES 690 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 691 AEIANRAKSEFLANMSHEIRTPMNA 715 >gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801] Length = 1193 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 101/433 (23%), Positives = 184/433 (42%), Gaps = 36/433 (8%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + E + + + + + + T+DGI + + Sbjct: 526 RVEERTEELSRLNQNLTEEILQRQEIEADLRESESRYHLAVSGTNDGIWDWDLRTNKVYY 585 Query: 478 NRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + K+ GY + + ++ + + + L + E ++ Sbjct: 586 SPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHL-DGKTEVYENSHRIKHRD 644 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + K L T+ DI++ K+ + L AK+ AE + KS+FLA Sbjct: 645 GHYIWIEAKGKCLRNQEGHPLRLVGTITDITQKKEAQEALRKAKESAEIANRAKSEFLAN 704 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ AI+GF E+++ G + +PR Y N I SG ++L ++ND+LD+SKI+ Sbjct: 705 MSHEIRTPMNAILGFCELLQ----GIIDDPRSRSYLNSIASSGKILLALINDILDLSKID 760 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710 SGK+ +++EP+ L + E + A +K++ + A++IP I+ D ++QI N Sbjct: 761 SGKLQINYEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFN 820 Query: 711 ILSNAIHFTPSGG-QIIIST--THTSNEE---------------------VILRVRDTGV 746 +L NA+ FT G +I + N E + + V DTG+ Sbjct: 821 VLGNALKFTHEGAVKIAVKATKKLPENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGI 880 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F Q + GTGLGL + + + G ++ S KG+ Sbjct: 881 GIAPEQQDYIFDAFTQSEGQSTRKYGGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTF 940 Query: 807 IFPLYDTSHPHDC 819 FP + HD Sbjct: 941 YFPNVSFAETHDI 953 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 13/145 (8%), Positives = 34/145 (23%), Gaps = 4/145 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W+ D S K +G + + D +D T Sbjct: 573 IWDWDLRTNKVYYSPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHLDGKTE 632 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + Y+ I+ + ++ R G + + + ++ + Sbjct: 633 VYENSHRIKHRDGHYIWIEAKGKCLRNQEGHP--LRLVGTITDITQKKEAQEALRKAKES 690 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 691 AEIANRAKSEFLANMSHEIRTPMNA 715 >gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106] Length = 1837 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 120/773 (15%), Positives = 241/773 (31%), Gaps = 68/773 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 W ++ G+ + G + + I + + Sbjct: 936 VWTVNPEGHFIQPQPAWEIYTGQSWSEYQNWGWIEAIHPEDQARVQSIWIQARDNKTIYQ 995 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +W T Y + +P+ + G + + +++F Sbjct: 996 SEGRIWNAA-TQNYRYFEAKGIPLLNSEGSVQ--EWVGTITDVDNRKRAEIALGQSEERF 1052 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL------TEYYAHKDDVLKTEK 258 + E + + K SP + L H +D + Sbjct: 1053 RQMAENVEDVFWIMDVKDVQILYVSPAYEHIWGHSCDRLYTNPYNWLEAIHPEDQQRVRI 1112 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + ++ + + + + N E + S Sbjct: 1113 AFFEQGFQDQFSQEYRIIRPDGSMRWIRDRSFPIPNEQGEVRRIAGIAEDITTSKQVAAA 1172 Query: 319 ENLTPETVDKCPI----PFFV-----YSHGNLF-----YANPSFLLLTKYKSVDDIEIAG 364 + + F + G + Y NP K + D I Sbjct: 1173 LRRSEQQFRVAQELSLYAFTILKSVRDETGQIIDFEFIYINPKAAEAVKRSAEDIIGQR- 1231 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L + + + + + + + + Sbjct: 1232 ------LLEVLPGSQLNTNLFNRYIQVVETGQPHDIEILYDADGITGWFHNMAVKLEDG- 1284 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAI-INREGIILS 476 + D + + + + ++EA I I +R ++ Sbjct: 1285 -----VAVSFSDISDRKQAEEALRDSEAAAKARAEELEILMEAVPAAIWIAHDRNCHQMT 1339 Query: 477 TNRAVSKLFGYPVEDIL---------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 N + +L I PF + + E Sbjct: 1340 ANLSAYELMRTSPGSITTATSPDGKNYLPFKQQRNGKEIPPHDLPMQRAGRTGEEVEGEL 1399 Query: 528 ITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIA 578 + + E + + + + + L D++E KQ + + A++ A Sbjct: 1400 EFVFDSGEVRYIYGKAVPLRNELGKVRGVIGAFLDVTERKQAEAEREQLLARERSAREEA 1459 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + K +FLA +SHE+R+PL I+G++ +++ Q+ + + + + I+R+ L + Sbjct: 1460 EAANRIKDEFLAVLSHELRSPLNPILGWANLLQRQK---VDDQVFHQALTTIERNVKLQV 1516 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++DLLD+S+I GK+ L+ V L + AI V+L A K I IRT + ++L Sbjct: 1517 QLIDDLLDVSRILRGKLKLNRSSVDLVVVILSAIETVRLAAEAKSIEIRTHLDTQVGKVL 1576 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D ++QI N+LSN + F+ +GGQ+ I E +RV+D G G+ L Sbjct: 1577 GDAGRLQQIVWNLLSNGVKFSETGGQVDIYLESV-GNEAQIRVQDRGKGINPKFLPYVFD 1635 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 F Q + + G GLGL + + + + G S KG + PL Sbjct: 1636 YFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTVQAESPGVGKGATFTVKLPL 1688 Score = 174 bits (442), Expect = 5e-41, Method: Composition-based stats. Identities = 52/526 (9%), Positives = 139/526 (26%), Gaps = 32/526 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G L ++ + + + L K T + Sbjct: 300 LDLEGRLLSMNSGGQLILEIHDLQPFLDQPWVKFWQDRDHPKAEKAIHLAKVGGTSRFQG 359 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + + + + PI+ + ++ + + + + + + L Sbjct: 360 YCPTQKGQSKWWDVIV--TPIFGKQQQVE--QILCLSRDITNLKEAENALRSSETLYRTL 415 Query: 208 HEIKKGHSSV----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + L + D + + Sbjct: 416 SDAVPDFIWSCDSNGQTDFVNSRWIEYTGLTLEELNSKGLQQINHPDDYPHLQQAWEEAK 475 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE---- 319 + + + + L++ +++ + Sbjct: 476 QQGGFFEAEFRYRRHDGVYRWFIGRAAPLKDEVGRVIKWIGTTTDIHERKQAEAEREQLL 535 Query: 320 -------NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL- 369 + + + P + L AN + Y D+E+ T+ Sbjct: 536 QQLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGYSYPLDLELDAYAQTIT 595 Query: 370 ---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + P++ I +I +S+ + +Q E Sbjct: 596 FTGFHPNGQPYQASEYPLLRSLKTGEVILGEEI--SILRADGDSIFINVNSAPIRDQQGE 653 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + R + + + +++E D + I +G + N L G Sbjct: 654 IVAAVAVFRDITAQRQAELSLRRGEERFRALIEQAPDAVLIAEIDGTYIDVNNNACDLLG 713 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y E+++ K + + + +L + + K+ + + I K Sbjct: 714 YRREELIGKQISELIPSEDQPRLAAMKQSLLLGNTHV---EEWKLIRKDGTDVPVEISTK 770 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 LP + + DI+E KQ + L ++ + +A V Sbjct: 771 ILPD-GRWQAFVRDITERKQAEAALRQREEELRLITDAVPALIAYV 815 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 69/524 (13%), Positives = 155/524 (29%), Gaps = 48/524 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNT 142 F W+ D++G ++ + G ++ L ++ P+ + ++ Sbjct: 422 FIWSCDSNGQTDFVNSRWIEYTGLTLEELNSKGLQQINHPDDY-PHLQQAWEEAKQQGGF 480 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G +Y A P+ + G A ++L + Sbjct: 481 FEAEFRYRRHDG--VYRWFIGRAAPLKDEVGRVI--KWIGTTTDIHERKQAEAEREQLLQ 536 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHK---------- 250 + I + + + ++ + + Sbjct: 537 QLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGYSYPLDLELDAYAQTITF 596 Query: 251 ------DDVLKTEKYPLLT---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + +YPLL + E L E+ + + +++ E Sbjct: 597 TGFHPNGQPYQASEYPLLRSLKTGEVILGEEISILRADGDSIFINVNSAPIRDQQGEIVA 656 Query: 302 YLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 ++ + GE +++ P + G N + L Y+ Sbjct: 657 AVAVFRDITAQRQAELSLRRGEERFRALIEQAPDAVLIAEIDGTYIDVNNNACDLLGYRR 716 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + I +S L+ + A+K +L +L I+ + T + Sbjct: 717 EELIGKQ--ISELIPSEDQPRLAAMKQSLLL---GNTHVEEWKL--IRKDG------TDV 763 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 P E + + + + + + + + +L I +A IA ++RE Sbjct: 764 PVEISTKILPDGRWQAFVRDITERKQAEAALRQREEELRLITDAVPALIAYVDREQRFRF 823 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 NRA FGYP E I+ + F+ + M + L+ T+E Sbjct: 824 VNRAYRDWFGYPPEKIIGQHLAEFIGETAYQYMKLNVESALA-GKPVTVELWMPFEGGPR 882 Query: 537 KLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + I I + + DI+ KQ + L +++ Sbjct: 883 YVRRQYIPDIANNGTVKGFYALITDITNLKQTEEALRQSEQRYR 926 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 48/525 (9%), Positives = 133/525 (25%), Gaps = 48/525 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D + +++E + G +++G + DV P ++ T Sbjct: 182 LDRNFCYTYVNQEAARLFGYSREELLGKQLWKDVFVAEAEYPEAEQLRQAMKEQT----P 237 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +L +++ A P G + + ++ + Sbjct: 238 LYLEAFSPSLNRYLEINAYP------SVEGISIY--FRDISERKKIETQLQSSEEFNRRI 289 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E V + + S S + + + + K + + Sbjct: 290 IESSADCIKVLDLEGRLLSMNSGGQLILEIHDLQPFLDQPWVKFWQDRDHPKAEKAIHLA 349 Query: 268 SLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + F + ++ + L + + + Sbjct: 350 KVGGTSRFQGYCPTQKGQSKWWDVIVTPIFGKQQQVEQILCLSRDITNLKEAENALRSSE 409 Query: 324 ETVDKCPIPF--FVY---SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 F++ S+G + N ++ T ++++ G Sbjct: 410 TLYRTLSDAVPDFIWSCDSNGQTDFVNSRWIEYTGLT-LEELNSKGLQQINHPDDYPHLQ 468 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + + A + + ++ + G + Sbjct: 469 QAWEE---AKQQGGFFEAE---FRYRRHDGVYRWFIGRAAPLKDEVGRVIKWIGTTTDIH 522 Query: 439 DTRINKRK-------MEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490 + + + + +E E ++ +IL+ G+ I + ++ N+ V ++ GY Sbjct: 523 ERKQAEAEREQLLQQLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGYSYP 582 Query: 491 -----DILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRI 543 D + T N + SL + L + + + + + Sbjct: 583 LDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGEVILGEEISILRADGDSIFINV 642 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DI+ +Q + L ++ Sbjct: 643 NSAPIRDQQGEIVAAVAVFRDITAQRQAELSLRRGEERFRALIEQ 687 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 40/509 (7%), Positives = 125/509 (24%), Gaps = 29/509 (5%) Query: 91 AHGYLKEISEELPKTIGNY----------AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 A L ++++ + +G A + + L + Sbjct: 562 ATQKLVLANQQVEQILGYSYPLDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGE 621 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + ++ +G ++++ + + PI + E + +R Sbjct: 622 VILGEEISILRADGDSIFINV--NSAPIRDQQGEIVAA--VAVFRDITAQRQAELSLRRG 677 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +++F L E + + + + ++ + Sbjct: 678 EERFRALIEQAPDAVLIAEIDGTYIDVNNNACDLLGYRREELIGKQISELIPSEDQPRLA 737 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + +E + + + + A + Sbjct: 738 AMKQSLLLGNTHVEEWKLIRKDGTDVPVEISTKILPDGRWQAFVRDITERKQAEAALRQR 797 Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E D P +V + N ++ Y I A + + Sbjct: 798 EEELRLITDAVPALIAYVDREQRFRFVNRAYRDWFGYPPEKIIGQ-------HLAEFIGE 850 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + S + L + + + + + Sbjct: 851 TAYQYMKLNVESALAGKPVTVELW-MPFEGGPRY-VRRQYIPDIANNGTVKGFYALITDI 908 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + + + S++ S + +N EG + A G + + Sbjct: 909 TNLKQTEEALRQSEQRYRSLVSILSSIVWTVNPEGHFIQPQPAWEIYTGQSWSEYQNWGW 968 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554 + + + + Q+ +I +T+ + + I + Sbjct: 969 IEAIHPEDQARVQSIWIQARDNKTIYQSEGRIWNAATQNYRYFEAKGIPLLNSEGSVQEW 1028 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 T+ D+ K+ + L +++ + + Sbjct: 1029 VGTITDVDNRKRAEIALGQSEERFRQMAE 1057 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 43/355 (12%), Positives = 115/355 (32%), Gaps = 23/355 (6%) Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKE 298 L Y + D ++ ++ +LT+ E+ E +DF+ + + K + + + + Sbjct: 85 PLKSCYPNLDQIIASDIQHILTTGEAICRENQDFNQQSFIEQKHGYFKTSYSPILDQIGQ 144 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSV 357 L A +++ + + Y N L Y Sbjct: 145 VAGVLGTLIEIPSPAQAPINPETPSNILERITDAFVALDRNFCYTYVNQEAARLFGYSRE 204 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + + + ++ M ++T + A + + Sbjct: 205 ELLGKQLWKDVFVAEAEYPEAEQLRQAM---KEQTPLYLEA------------FSPSLNR 249 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + N +P + + + + + +++ I+E+++D I +++ EG +LS Sbjct: 250 YLEINAYPSVEGISIYFRDISERKKIETQLQSSEEFNRRIIESSADCIKVLDLEGRLLSM 309 Query: 478 NRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N + ++ L +P+ F + + + + + + Sbjct: 310 NSGGQLILEIHDLQPFLDQPWVKFWQDRDHPKAEKAIH-LAKVGGTSRFQGYCPTQKGQS 368 Query: 537 KLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K + + K DI+ K+ +N L ++ + S DF+ Sbjct: 369 KWWDVIVTPIFGKQQQVEQILCLSRDITNLKEAENALRSSETLYRTLSDAVPDFI 423 >gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB] gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB] Length = 1026 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 121/666 (18%), Positives = 232/666 (34%), Gaps = 51/666 (7%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + + + L + S + +R + + Sbjct: 217 VPVYRPSMPHETIKERRTALLGFTFSPFRAEDLMRSAVSRDNKDVEIELYDGEIRPERLL 276 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEE---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + + + P+ + + +F +I +Q Sbjct: 277 FDSHIDQSSASQGRQQVELPIEFGGHQWIALFRSRPEFDSITASQLPISIALIGTLIGLM 336 Query: 298 ESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 F L + + +E E ++ P + G AN L L Sbjct: 337 SFFWLLRKNRFQQSITAYADRLEENETRLRTLINTMPDIVCLKDGAGRWTEANTLLLRLF 396 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH---TIQWNREN 409 +++ + G L A D + L SD RLH TI ++ Sbjct: 397 ---ALESVGYQGMTGGELAAAGHFDYA--RLAALEASDEQVWLNGERLHDELTIPVEGQH 451 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + + ++ + + ++E + G+ II Sbjct: 452 DRIFDIAKVPLFAADGSRHALLTVGRDITERVETEKALRSAERKFRGLIEQSLAGVYII- 510 Query: 470 REGI-ILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +G N +++FGY ++I+ +P L M +TL Sbjct: 511 -QGRCFRYVNPYFARIFGYDSPDEIIDQPLFEELVSPQDRQMVANNVRRRLNGEMETLHY 569 Query: 528 ITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----- 580 +G K+ + + + + DI+E KQ + +L ++ E+ Sbjct: 570 SFVGQRKDGSPVDVEVFGTKVDYEDQPALIGVVIDITERKQAEAELKRHRENLEEQVNAR 629 Query: 581 -------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KS FLA +SHE+RTP+ AIIG + ++ N E Sbjct: 630 TADLLLAKEAAEAANRAKSTFLANMSHELRTPMNAIIGMTHLLIRGN----ENASQREKL 685 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + + + +L ++ND+LD+SKIE+ ++ L P+ + + V+ AIS+ K + Sbjct: 686 AKVSNAADHLLHLLNDILDLSKIEAERLTLEKIPLRISDIVANAISMAGEKIAAKGLQFN 745 Query: 688 TSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 + + ++ D ++QI LN+L NA+ FT G I +S + T + + + Sbjct: 746 QQISPQLVTTELIGDPLRLRQILLNLLDNALKFTAQGS-ISLSASVTDETSENLTIRISI 804 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG G+ + ++ PF Q+ S + GTGLGL + K ++ GK + STP G Sbjct: 805 EDTGTGIPDEAKDRIFAPFEQVDGSTTRQHGGTGLGLSIVKQLIHLMHGKIEVSSTPGIG 864 Query: 802 TLIEII 807 + + Sbjct: 865 SCFTLT 870 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 46/408 (11%), Positives = 112/408 (27%), Gaps = 26/408 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G E + L + + GM +++ H D + W L Sbjct: 380 DGAGRWTEANTLLLRLFALESVGYQGMTGGELAAAGHFDYARLAALEASDEQVWLNGERL 439 Query: 150 -----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 P+EG + + D+A +P+++ + G + + ++KF Sbjct: 440 HDELTIPVEGQHDRI-FDIAKVPLFAADGSRHALLTVG--RDITERVETEKALRSAERKF 496 Query: 205 SHLHEIK-KGHSSVEKEKYDIFSQQSP-PPHLRMKNKVS--SLTEYYAHKDDVLKTEKYP 260 L E G ++ + + +++ L E D Sbjct: 497 RGLIEQSLAGVYIIQGRCFRYVNPYFARIFGYDSPDEIIDQPLFEELVSPQDRQMVANNV 556 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 F + + + ++ + + + Sbjct: 557 RRRLNGEMETLHYSFVGQRKDGSPVDVEVFGTKVDYEDQPALIGVVIDITERKQAEAELK 616 Query: 321 LTPETVD---KCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E ++ + + AN + FL ++ + G++ LL Sbjct: 617 RHRENLEEQVNARTADLLLAKEAAEAANRAKSTFLANMSHELRTPMNAIIGMTHLLIRGN 676 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + K + + + + + L + IP ++ + G + Sbjct: 677 ENASQREKLAKVSNAADHLLHLLNDILDLSKIEAERLTLEKIPLRISDIVANAISMAGEK 736 Query: 435 PEDVDTRINKR--------KMEIEVMQLCSILEATSDGIAIINREGII 474 + N++ ++ + ++L IL D +G I Sbjct: 737 IAAKGLQFNQQISPQLVTTELIGDPLRLRQILLNLLDNALKFTAQGSI 784 >gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC BAA-450] Length = 1057 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 100/390 (25%), Positives = 182/390 (46%), Gaps = 17/390 (4%) Query: 429 PQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + I E ++ I +R ++ +I+E + I++ I+ N+ + +G Sbjct: 138 RELAIHQEGLEEEIERRTRDLQASEALSRTIIEGAPSSVVILDAHKKIVLWNKTAIETYG 197 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTE---ILSLDLRQTLEKITLGSTKEEKLLSLR- 542 Y VE+ + L P ++ L++ I D T+E+K + + Sbjct: 198 YSVEEATGQNLFELLRAELPLELSELLSQDITIEDQDKVSGAFFEVQTYTREDKPIPIDL 257 Query: 543 -IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + ++ + D++ KQ +++L+ A+ AE+ KS FLA +SHEIRTP+ Sbjct: 258 GMTVFLFDDECRIAMFLRDVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMN 317 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIG S + P + +Y + I S +L+L I+ND+LD SKIE+GK+++ Sbjct: 318 AIIGMSHLALKTDLTP----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIE 373 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 LD+ + + A EK + + ++P + D + QI +N+++NA+ FT Sbjct: 374 FYLDDVLHNVSMVTGQKAFEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTE 433 Query: 721 SGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G +I +S + E+ V+DTG+GM+ + K F Q S + GTGL Sbjct: 434 QG-EISVSVKVIRSLDDKIELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGL 492 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GL + + +V+ G+ + S G+ Sbjct: 493 GLSICRRLVELMGGEISVDSELNVGSTFRF 522 >gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1260 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 110/489 (22%), Positives = 203/489 (41%), Gaps = 26/489 (5%) Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G + T + V + G+ L L+ + V L ++ Sbjct: 142 GMFIDKARQEVQATTIRLVAAFAVVLGVIALFLYVFLNRLLILPVVNLSILTQSLSRGEF 201 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + R+ + + E + + + +L +I Sbjct: 202 VTTNLDQRRDELGVLAHGFNIMSQSLKELYKSLEEKVD-----ARTEDLNNAYHELQAIF 256 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL- 517 + + GI++++ + ++ NR + +FGY V +I F + + + + Sbjct: 257 DNSLVGISVLSSDHKVIRANRRFATIFGYSVAEIPLISPEKF--HVSGRNFDEFSEKFFN 314 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHA 574 L R+ + K+ + ++ K + + DIS+ K+ L Sbjct: 315 RLAEREIAQLEYQFRRKDGSVFWSQVSAKAIDPQDLSRGVIFVIEDISDRKKASELLRQH 374 Query: 575 -------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K A+K + KS+FLAR+SHEIRTP+ AI+G +E+++ N EY Sbjct: 375 AEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQETSL----NEDQQEYV 430 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 +G L+L I+ND+LD SKIE G++ L P +L E V + L A EK + + Sbjct: 431 KTFSSAGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAEEKALRLE 490 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRD 743 + + + + D ++QI +N++ NA+ FT GG + ++ + + + V+D Sbjct: 491 KKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSVGGVTMSVTESVMDDGAPCCLFAVKD 550 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ +L + F Q +S GTGLGL ++K +V+ G+ ++ S P +GT Sbjct: 551 TGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMGGQIWVESEPGQGTT 610 Query: 804 IEIIFPLYD 812 PL Sbjct: 611 FFFKLPLAP 619 Score = 44.6 bits (104), Expect = 0.074, Method: Composition-based stats. Identities = 20/244 (8%), Positives = 54/244 (22%), Gaps = 24/244 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKM----------IGMRLCDVSD-ILHIDPNNHIGDLLKRQ 140 + + G ++ G + S+ + I L Sbjct: 269 DHKVIRANRRFATIFGYSVAEIPLISPEKFHVSGRNFDEFSEKFFNRLAEREIAQL---- 324 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + +G+ + + A+ +R F I ++ L + Sbjct: 325 -----EYQFRRKDGSVFWSQVSAKAIDPQDLSRGVI----FVIEDISDRKKASELLRQHA 375 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + K S + + + P + + Sbjct: 376 EDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQETSLNEDQQEYVKTFSS 435 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + DF I + Q + L+ + + +R + Sbjct: 436 AGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAEEKALRLEKKVSE 495 Query: 321 LTPE 324 + Sbjct: 496 GLAQ 499 >gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297] gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297] Length = 1593 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 173/370 (46%), Gaps = 13/370 (3%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E + S+LE+ D I++ +GII NR ++FGY ++L + L + + Sbjct: 714 EKDRKLFKSLLESAPDPTFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKA 773 Query: 508 VMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISE 563 + R+ + + K+ + + + L + S + DI+E Sbjct: 774 NHPQQRAAFIQNPTRRLMGVGRDLFARCKDGTEFPVEVTLGVVPLEDRTLVSAALRDITE 833 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + KL HA A + KS FLA SHEIRTPL AIIG S ++ ++ Sbjct: 834 RKNSEEKLQHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLSHLLDHENL----TENQ 889 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I SG +L+I+ND+LD+SKIE+ ++++ PV+L E + + +++ ++ A+ K Sbjct: 890 HLLVDKIQLSGQSLLNIINDVLDLSKIEANEVDIESTPVNLRELIEDTLNVHRMQADLKG 949 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEVIL 739 + + + +P + D +KQI N+ SNA+ FT G I + T V Sbjct: 950 LEVALNIDPKVPNWVETDKTRLKQILDNLFSNALKFTSEGS-ISLRCHLVEETDRATVRF 1008 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G++ ++ +PF Q S + GTGLGL + +V G+ + S Sbjct: 1009 EVIDTGIGISEKAQQQLFEPFTQADVSTTRKYGGTGLGLSIILKLVYLMEGRLGLESEEG 1068 Query: 800 KGTLIEIIFP 809 +G+ P Sbjct: 1069 QGSRFWFELP 1078 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 15/161 (9%), Positives = 39/161 (24%), Gaps = 16/161 (9%) Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI------------ 362 ++ L ++ P P F V G + N + Y+ + + Sbjct: 714 EKDRKLFKSLLESAPDPTFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKA 773 Query: 363 --AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + + P + + D T L + ++ + Sbjct: 774 NHPQQRAAFIQNPTRRLMGVGRDLFARCKDGTEFPVEVTLGVVPLEDRTLVSAALRDITE 833 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 E + + + + ++ + L A Sbjct: 834 RKNSEEKLQHAITQAMSSAEAKS-AFLANTSHEIRTPLNAI 873 Score = 45.8 bits (107), Expect = 0.034, Method: Composition-based stats. Identities = 15/145 (10%), Positives = 42/145 (28%), Gaps = 11/145 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLK---RQN 141 T+ +D G ++ ++ + G +++G + + + ++ R+ Sbjct: 731 TFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKANHPQQRAAFIQNPTRRL 790 Query: 142 TWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 G+ +GT V + L +P+ R + + + Sbjct: 791 MGVGRDLFARCKDGTEFPVEVTLGVVPLEDRT------LVSAALRDITERKNSEEKLQHA 844 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225 + E K + + Sbjct: 845 ITQAMSSAEAKSAFLANTSHEIRTP 869 >gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1043 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 116/788 (14%), Positives = 256/788 (32%), Gaps = 84/788 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147 D G + + + +G +A +++G + ++ + Q+ G Sbjct: 257 TDTSGTIISFNSAAEQMLGYHASEVVGRLAPEKLHDPTELEQHAEQMSRFFGQSISAGFE 316 Query: 148 TLWPIE-----GTNLYVPID---------LAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 +L + + + L+ ++ N +G+ IV D Sbjct: 317 SLIAKARLGTIDESEWTYVRRDGSRFFGLLSTSAMHDENGAITGY--VFIVSDVTRRKDA 374 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250 ++++++ L + +V + L ++ V H Sbjct: 375 EKAKSQIERRYRALLQNSSDMVAVIDAAGHLQYISPAVERLLEFEVQELVGREIFDIIHP 434 Query: 251 DDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSH 305 DV + + S P++ + T + L + Sbjct: 435 ADVETARTSFYSIALTPGYSAPQELRLRRADGEYLTTEIVANNLLTDEVLHGIVLNARDI 494 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL--LLTKYKSVDDIEIA 363 A + + + + + N + D Sbjct: 495 TERSRARAQLEVQNAVARVLAEAENLDQSIPEILQALCNNLDWELSEFWGVDPEQDSMTF 554 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------------------------- 396 +L + + + R + Sbjct: 555 NFAWSLPGIDLSEFLDISQHTRIQRGEGLAGRVWEKATAIQVPDITQEENFVRKIEVEAL 614 Query: 397 ---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEI 449 +A I+ T + + + + ++++ Sbjct: 615 SLKTAVGFPIRSREGVIGVFTLFSMRHRHVDNHLLSMLNTVGAQIGQFIARKRAEQEITQ 674 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + + E ++D I +G IL N GY E++L+KP + Sbjct: 675 NEDRYHYLFENSADLILTFGTDGTILHPNSTWMSTLGYSREELLKKPLFDLIGPEDRERC 734 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQ 566 + I+ T + +++ + + + I + S D+++ ++ Sbjct: 735 KAIIGMIVRSG--STDKVELTFRSQDGRKIVVEGTISCRYGITGVEYCSAIFQDVTKRRE 792 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K++F++ VSHE+RTPLT+I G ++ + Sbjct: 793 V--------------DRMKNEFISVVSHELRTPLTSIRGSLGLLAGGAL-RKDPEKADRM 837 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ++ ++ ++ND+LDI KIESG + L+ +P+ + +S+A + + A+ ++ + Sbjct: 838 LDIALKNTERLVRLINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRL 897 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T I + AD + Q N+LSNAI F+ + IS+ +++RVRD G Sbjct: 898 ETHSTRGI--LYADRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRR-GGGLLIRVRDQGR 954 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + +L+ + F Q+ S GTGLGL + +++V + G ++ S KG+ I Sbjct: 955 GIPSNKLQTIFERFQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSIDGKGSEFFI 1014 Query: 807 IFPLYDTS 814 + P + Sbjct: 1015 LLPRFQEE 1022 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 43/384 (11%), Positives = 110/384 (28%), Gaps = 45/384 (11%) Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM----TFIPFEKANQFPE 426 +++ + + +A RL +++ + A + + Sbjct: 156 VQRRVATEGKRRMDEIQTKVSEGVALETRLLSVRIEAQRRSAGKSLRSILTGGLLAMLFL 215 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 ++ + +R+++ ++L + + I + G I+S N A ++ G Sbjct: 216 AAAGLVLQRDIQKRFAVERQLQRTTALQRAVLNSANYAIISTDTSGTIISFNSAAEQMLG 275 Query: 487 YPVEDILRK-PFTVFLEQNTPSVMNHYLTE-------------ILSLDLRQTLEKITLGS 532 Y +++ + + ++ I L E Sbjct: 276 YHASEVVGRLAPEKLHDPTELEQHAEQMSRFFGQSISAGFESLIAKARLGTIDESEWTYV 335 Query: 533 TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 ++ + + + Y + D++ K + S ++ + SD Sbjct: 336 RRDGSRFFGLLSTSAMHDENGAITGYVFIVSDVTRRKDAEKAKSQIERRYRALLQNSSDM 395 Query: 589 LARV---SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL- 644 +A + H L I E + L + + D L Sbjct: 396 VAVIDAAGH-----LQYISPAVERLLEFEVQELVGREIFDIIHPADVETARTSFYSIALT 450 Query: 645 --------LDISKIESGKMNLHFEPVSL--DEAVSEAISLVQLYANEKRILIRTSFANNI 694 L + + + + +L DE + + + R + N + Sbjct: 451 PGYSAPQELRLRRADGEYLTTEIVANNLLTDEVLHGIVLNARDITERSRARAQLEVQNAV 510 Query: 695 PRILADLRSVKQ----IALNILSN 714 R+LA+ ++ Q I + +N Sbjct: 511 ARVLAEAENLDQSIPEILQALCNN 534 >gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium] Length = 595 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 216/466 (46%), Gaps = 14/466 (3%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + G LD A +PV + + A L I+ Sbjct: 130 WESTLAEPMRRALRGESGTVIDLDYRAAKVLAAFEPVRRLNA---GVVAKIDLAEIRRPF 186 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + F+ ++ + P + E+ +L +E + I I Sbjct: 187 LRAAGVCFVSLLLMIAIGASLFRRISVPLIEGEKAM-----GELRKLHQSIEQSPLMIFI 241 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +REG I N ++ GY V++++ + + + P L L + + Sbjct: 242 TDREGRIEYVNPRFCEITGYSVDEVIGRNPRILNSGDMPREFFAELWSTLLSGRQ--FKA 299 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K+ +I+ + + DI++ KQ + A++ AE + Sbjct: 300 EIKDRRKDGSSFWAQIVTSPVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQAEIANR 359 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K++ LA +SHE+RTPL AIIGFSE +K Q FGPLG+ +Y EYA I+ SG +L ++ND Sbjct: 360 AKTELLANMSHELRTPLNAIIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQHLLKLIND 419 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+S IE+GK L E +++ E ++ LV+ A + + + ++ +P +LAD R Sbjct: 420 ILDVSAIEAGKTTLQEELLNVVEIAETSLRLVRARAEKGSVSLFLEASDGLPPLLADGRR 479 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +KQI LN+LSNA+ FTP GG++ + + L V DTG+GM EL AM FGQ+ Sbjct: 480 IKQILLNLLSNAVKFTPEGGRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLAMTEFGQV 539 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R EGTGLGLPL K +V+ + G F + S GT IFP Sbjct: 540 DGGLDRRHEGTGLGLPLTKGLVEIHGGIFSVESKKGHGTTASAIFP 585 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 66/246 (26%), Gaps = 14/246 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 + D G ++ ++ + G ++IG ++ + L + Sbjct: 239 IFITDREGRIEYVNPRFCEITGYSVDEVIGRNPRILNSGDMPREFFAELWSTLLSGRQFK 298 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G++ + I + P+ ++ + F + + ++ Sbjct: 299 AEIKDRRKDGSSFWAQIVTS--PVRNKEGLITHF--VAVHEDITQRKQAEQATQAAREQA 354 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + K + + +P + ++ L + + + S Sbjct: 355 EIANRAKTELLANMSHELR-----TPLNAIIGFSEGMKLQLFGPLGSAKYEEYAEDINAS 409 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + L D ++ + TLQ E + +L E Sbjct: 410 GQHLLKLINDILDVSA----IEAGKTTLQEELLNVVEIAETSLRLVRARAEKGSVSLFLE 465 Query: 325 TVDKCP 330 D P Sbjct: 466 ASDGLP 471 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 26/284 (9%), Positives = 67/284 (23%), Gaps = 19/284 (6%) Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 R++ GF G R + + + S++ + +S Sbjct: 88 AQRDYPGFGESGEFAFGRREGANIVILLSGRHVNRGVPVSVPWESTLAEPMRRALRGES- 146 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + + ++ L + E P ++ Sbjct: 147 -GTVIDLDYRAAKVLAAFEPVRRLNAGVVAKIDLAEIRRPFLRAAGVCFVSLLLMIAIGA 205 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFL 349 +L +++++ P+ F+ G + Y NP F Sbjct: 206 SLFRR---------ISVPLIEGEKAMGELRKLHQSIEQSPLMIFITDREGRIEYVNPRFC 256 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 +T Y + I G + + + A + + + Sbjct: 257 EITGYSVDEVI----GRNPRILNSGDMPREFFAELWSTLLSGRQFKAEIK---DRRKDGS 309 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 S + N+ + + + ++ + Q Sbjct: 310 SFWAQIVTSPVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQ 353 >gi|114563977|ref|YP_751491.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114335270|gb|ABI72652.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1632 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 121/771 (15%), Positives = 264/771 (34%), Gaps = 62/771 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNH-IGDLLKRQNTWYGKT 147 D G + ++ G ++IG++ D N +L ++ + Sbjct: 366 DCDGVITSWNDGAVMMFGYEKHEVIGLKKTTFIVPNDGYDAENEKFNQVLNGKSLLNFVS 425 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----RLDKK 203 + + + +L IY+ + G + V + L++K Sbjct: 426 QHKRKDNEL--LSTSMTSLAIYNEFGKIIGVSQ--TIRDITVQLNAEKQILNINASLERK 481 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------------------MKNKVSSLTE 245 + + + S K D +QQ + ++ Sbjct: 482 VTERTQALQQALSENKTLLDNINQQLLYSETDKNGVILVVNDNFCQTSGFTREQMIGKKH 541 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYL 303 ++ + + + + E+ N + + + + Sbjct: 542 SILKSNEHDRAFWKQMWQTIHAGETWHEEICNRDKQGNIKWLDTVITPVMDENGNLVRCI 601 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357 + R + +N + + G + N LL Y++ Sbjct: 602 ALRIDITERKNSQLEKNKLASLLTNVLAAATEIAIISTDNDGIINIFNRGAQLLLGYQAE 661 Query: 358 DDIE-IAGGLSTLLDAPKLSDNNAIKPV--------MLYRSDRTCIAASARLHTIQWNRE 408 + + + + L + + + RT R T Sbjct: 662 EIVGKQSPAILHLPSEIRQRSKELTEEFGEDISAFDVFVYKPRTQGP-ETRTWTYIRKDL 720 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + ++ +Q E + G+ + ++ QL E GI + Sbjct: 721 SQCQVSLSVSAMRDQSGEIVGYLGVAVNIDQMLKQQEELVSASNQLSKAAEVAELGIWNL 780 Query: 469 NREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + + L N + ++ YP + + + + + + + L + + L++ Sbjct: 781 DLDTDNLQWNDRMFAMYDYPLALTEKGLNYQHWQKRVHPDDIEMAELALQQAIDLNIPYE 840 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + S+ + + + I DI+E ++ + L AK+ A+ S Sbjct: 841 PTFRIITSSNQIRYIHAGAQISYDKTGKPVRVVGINRDITEQRELEQTLRLAKQAADAAS 900 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + KS FLA +SHEIRTP+ A++G ++I++ + +Y + + +L ++N Sbjct: 901 AAKSAFLANMSHEIRTPMNAVLGMLQLIQHSDMSR----QQADYVTKAENAAKSLLGLLN 956 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+LD SKI++GK+ L P L+ + E ++ + + + + IP I D Sbjct: 957 DILDFSKIDAGKLELDLHPFQLETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLIEGDE 1016 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAM 757 ++Q+ LN+ NAI FT G +I+ + + + D+G+G++ + K Sbjct: 1017 LRLRQVLLNLAGNAIKFTSEG-HVIVGVQCNECTANQVNLTISITDSGIGISPEQSSKIF 1075 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + F Q +S R GTGLGL + K++V+ G+ + S +G+ Sbjct: 1076 QGFVQAESSTSRRFGGTGLGLAITKSLVELMGGELSLSSHVGEGSRFWFEL 1126 Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 64/447 (14%), Positives = 134/447 (29%), Gaps = 37/447 (8%) Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 ++ + N+ EF G RGFG + RV + A K Sbjct: 75 VIYTVGEDNISRDFFKKYSLTRDFESEFPGARGFGYIR--RVPANDEASFVAKAKLDDWP 132 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + + E+Y I + +L + + + LT + Sbjct: 133 DFSVRQLTPHDDERYVIDYIEPVERNLAAVGLDIASEQNRKNAAQQAYLTGETRLTGPIT 192 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + L + T + + P ++ E NL+ +T Sbjct: 193 LVQATGHPLQAFLILMPIYRTGLTPATPALREQQAFGWSYAPLVANEVFEQINLSRKTTK 252 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + +FY VD++ LD + V Sbjct: 253 LLVNDVTDAQNNVMFY----------ETHVDEVNPLTSFVVTLDREIFGRKWQVSLVAY- 301 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + L + + ++ + + + + I ED + R Sbjct: 302 ----PEFVSGLHLSSPKIVFSYGAIVSLLLGGLIGFYGYALGRKRIIMEDNERR------ 351 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-P 506 +ILE + D I + +G+I S N +FGY +++ T F+ N Sbjct: 352 -------ANILEHSLDAIISFDCDGVITSWNDGAVMMFGYEKHEVIGLKKTTFIVPNDGY 404 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562 N ++L+ L ++ K+ +LLS + + + T+ DI+ Sbjct: 405 DAENEKFNQVLNGK--SLLNFVSQHKRKDNELLSTSMTSLAIYNEFGKIIGVSQTIRDIT 462 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFL 589 + ++ + E++ + ++ L Sbjct: 463 VQLNAEKQILNINASLERKVTERTQAL 489 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 38/385 (9%), Positives = 97/385 (25%), Gaps = 29/385 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146 D +G + +++ +T G +MIG + + H + + TW+ + Sbjct: 511 ETDKNGVILVVNDNFCQTSGFTREQMIGKKHSILKSNEHDRAFWKQMWQTIHAGETWHEE 570 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G ++ + P+ N I R ++ Sbjct: 571 ICNRDKQGNIKWLDTVI--TPVMDENGNLVRCIALRIDITERKNSQLEKNKLASLLTNVL 628 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + S + + + + + V + H ++ L Sbjct: 629 AAATEIAIISTDNDGIINIFNRGAQLLLGYQAEEIVGKQSPAILHLPSEIRQRSKELTEE 688 Query: 265 EESSLPEQEDFH----------------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + F +L+Q +++ S E YL + Sbjct: 689 FGEDISAFDVFVYKPRTQGPETRTWTYIRKDLSQCQVSLSVSAMRDQSGEIVGYLGVAVN 748 Query: 309 PSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIA 363 E N + + + + N + Y + Sbjct: 749 IDQMLKQQEELVSASNQLSKAAEVAELGIWNLDLDTDNLQWNDRMFAMYDYPL--ALTEK 806 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G D+ + + L ++ I I + + ++ Sbjct: 807 GLNYQHWQKRVHPDDIEMAELALQQAIDLNIPYEPTFRIITSSN-QIRYIHAGAQISYDK 865 Query: 424 FPENMPQNGIEPEDVDTRINKRKME 448 + + GI + + R ++ + Sbjct: 866 TGKPVRVVGINRDITEQRELEQTLR 890 >gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB] gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB] Length = 1560 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 121/659 (18%), Positives = 224/659 (33%), Gaps = 49/659 (7%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G G+ + + + + H + V + L + Sbjct: 567 GIGMQRSRQTLAHSEEMLLQAQRLARLGHFTFDAATDVLRGSPTHNELFGIEAGLEIDTD 626 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + + + + + + E + + Sbjct: 627 TWLSLIHPEDRQRMADYSRDHVFRGRQPFDTEYRVIRRNDGEVRWLHGAGQIEITANGRV 686 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFY----ANPSFLLLTKY 354 + +F+ + + + + I ++ + + Sbjct: 687 ARLFGTSQDITERKHFERRLSRNEKALKEAQAIANLGSWTLDILSDKLTWSDEVYRIFGV 746 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 ++ L L D + ++ + + R+ + + Sbjct: 747 AKDQPLK----LGDFLARIHPDDRDRVQADWNAALQGSPYNSEHRITV----DQQVRWVR 798 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + G + + + ++ +L +E T I I N I Sbjct: 799 ERAHIRIDDEGRAAFAVGTVQDVTERHEAEEQLR----KLSLAIEQTPHSIVITNTAAKI 854 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N A + GY + + +V TP + L + L + + K Sbjct: 855 EYVNEAFVRNTGYSRSEAIGSNPSVLHSGMTPGESYNELWQTLGRG--EVWHGEFMNRRK 912 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK------------------NKLS 572 + + II + Y DI+E K+ + +L+ Sbjct: 913 DGSIYEEFAIISPVRQPDGKVTHYLAIKEDITEKKRIQSELNSYRQHLEQLVAERTEELN 972 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 HAK AE S K+ FLA +SHEIRTP+ AIIG + + + P N R + Sbjct: 973 HAKDEAESASRAKTAFLANMSHEIRTPMNAIIGLTHLAQRSTSDPEQNKR----LGKVAD 1028 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + + ++ I+ND+LDISKIE+ K+ L SL + + A LV A+ KR+ + Sbjct: 1029 AAHHLMSIINDVLDISKIEANKLKLENTDFSLAQLCTAACELVTQRADAKRLPVTCIIDP 1088 Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGM 748 +P +L D ++QI LN LSNAI FT G I + S + +++R V DTG+G+ Sbjct: 1089 ALPPVLCGDPLRIQQILLNFLSNAIKFTERGKIDIRVQALQKSGDGILIRCAVSDTGIGI 1148 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + K PF Q S R GTGLGL +++ + +A G+ + S +G+ Sbjct: 1149 ASDAQRKLFVPFEQGDASTTRRYGGTGLGLAISRRLAEAMHGEIGVDSKLGQGSTFWFT 1207 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 50/153 (32%), Gaps = 5/153 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147 + ++ ++E + G + IG + + + N + L R W+G+ Sbjct: 848 TNTAAKIEYVNEAFVRNTGYSRSEAIGSNPSVLHSGMTPGESYNELWQTLGRGEVWHGEF 907 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ ++ P+ + + + + I ++ + L Sbjct: 908 MNRRKDGSIYEEFAIIS--PVRQPDGKVTHY--LAIKEDITEKKRIQSELNSYRQHLEQL 963 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + + K++ + S+ M +++ Sbjct: 964 VAERTEELNHAKDEAESASRAKTAFLANMSHEI 996 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 38/412 (9%), Positives = 101/412 (24%), Gaps = 17/412 (4%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G + + V + P K I + E I ++ + L + Sbjct: 10 GDIMTSDVRSLPPQATLEDAAKLMAAEHISSLLVIADGEALGIVTESNILRALHARQPRE 69 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + + + + L+++ + T + Sbjct: 70 TRLDVIMSQPLITAPSDLNLISARRLVEERNIRHLVVKNPNGTVAGIVSDTDFRIRLGTA 129 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 H + +D+ + L +N + DI Sbjct: 130 AFQHLRTLEGIMDRQIPKLPPDALLDQAIACMVNNAADYLIVSNDDTP--LGILTERDIP 187 Query: 362 IAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT--FIPF 418 L L + P+ + + A ++ L + Sbjct: 188 RL--LDKFLTPHDVRLGETMSSPLRSVNVEMSVTGALEAMNRFHLRHMVVLDNNGKILGV 245 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILS 476 + E + +E + + ++ +E L L+ G + + I+S Sbjct: 246 VSQRRLFEQLALERLENALHQMQQERDRLRLE-AHLQLALDVAGAGSWEYQHDTDRHIVS 304 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 V L G +D R + + ++ Sbjct: 305 --DGVQALLGCTQDDTPRTLNEWMERIHPDDRHLLATAASADHGKTPSQVVEYRIRHQDG 362 Query: 537 KLLSL---RIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + ++ S ++DI+E + + +++ + ++ Sbjct: 363 HWIWVENRSCVTERNADGSPMVTAGILNDITERELARQQITRQNRALRMMTA 414 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 36/407 (8%), Positives = 103/407 (25%), Gaps = 25/407 (6%) Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 + +G I L L+ + + +E N+ + Sbjct: 48 EALGIVTESNILRALHARQPRETRLDVIMSQPLITAPSDLNLISARRLVEERNIRHLV-- 105 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---------FSHLHEIKKGH 214 + + N +G R+ + L+ L + Sbjct: 106 ----VKNPNGTVAGIVSDTDFR-IRLGTAAFQHLRTLEGIMDRQIPKLPPDALLDQAIAC 160 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----TEKYPLLTSEESSLP 270 Y I S P + + + L + + DV + + E S Sbjct: 161 MVNNAADYLIVSNDDTPLGILTERDIPRLLDKFLTPHDVRLGETMSSPLRSVNVEMSVTG 220 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD-KC 329 E + +L G + + + +A + ++ Sbjct: 221 ALEAMNRFHLRHMVVLDNNGKILGVVSQRRLFEQLALERLENALHQMQQERDRLRLEAHL 280 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL---SDNNAIKPVML 386 + V G+ Y + + + + + + ++ Sbjct: 281 QLALDVAGAGSWEYQHDTDRHIVSDGVQALLGCTQDDTPRTLNEWMERIHPDDRHLLATA 340 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNGIEPEDVDTRINKR 445 +D + + I+ + + + + N M GI + + + ++ Sbjct: 341 ASADHGKTPSQVVEYRIRHQDGHWIWVENRSCVTERNADGSPMVTAGILNDITERELARQ 400 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 ++ + L + + + + ++ ++ GY + + Sbjct: 401 QITRQNRALRMMTAVAQILVRYTDEQQMLAEICTVAVEVGGYMMAWV 447 >gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila SL1] Length = 871 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 120/737 (16%), Positives = 244/737 (33%), Gaps = 40/737 (5%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID G + + + + G ++ GMR+ ++ + + Q ++ Sbjct: 27 IDPETGAILDANPSAVRFYGYPREELCGMRIQQINTLDEPQVRAEMARARAEQRRYFRFQ 86 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +++ + P+ R++ I+H + + F L Sbjct: 87 HRLC---GGEVRDVEVYSGPLELAGRQYLH----SIIHDITDTRRYQRRLEVFHDLFRSL 139 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + L + L + + E Sbjct: 140 P--VGIYRNTPGPSGRFLEVNPAMVELFEAESEAQLLATPVAALYRDPERRAEISALIER 197 Query: 268 SLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + T+ + +++ + S + Sbjct: 198 EGSVSWAELQARTLRGRPLWLRLSVRRVEDEHGR-TVFDGMVEDISAHVRLQGERDR--- 253 Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 ++ + G + NP+ L + S + + + ++ Sbjct: 254 LLEAINEGVCGLDDAGRFTFLNPAARQLLGFASEEAALGREAHALTHHSRPDGTPYPLEE 313 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 ++R R+ A + + + R Sbjct: 314 CPIFRVLRSGEPLEAWQDYFWRTDGRGFDVLVYAAPLRDVEGGITGIVLSFQDISRRRRI 373 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ Q+ IL+ I + +L NR V++LFG P + + + +L Sbjct: 374 ERE----RDQMLEILDHHPHLIQRFLPDTTLLYANRMVAELFGIPPPQMDGRRWIEWLGP 429 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDI 561 + +L T++ L +T E++ + S + DI Sbjct: 430 EAREQLEAFLCRFTRAAPVGTVQLAVLAATGEQRRVQWTCQAFFDEDGLISHFQAVGIDI 489 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E + + + + FLA VSH++RTPL AI GF+++++ P Sbjct: 490 TEQVAAE-------RARAQADRDRRTFLAAVSHDLRTPLNAIYGFTDLLQATELTP---- 538 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + EY + +L +++ LLD+S++ESG++ LH EP L E V +++++ A E Sbjct: 539 QQREYLGLCRSASEKLLALIDTLLDLSRMESGRLTLHDEPFELAEVVERQVAVLRAVAEE 598 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + A P + D Q+ N++SNAI FT G ++++ + + + Sbjct: 599 AGLRLTVREAPGTPQWVRGDATRFGQVVHNLISNAIQFTEHG-EVVLEVAPEGSGWLYVA 657 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVG+ + E K F Q S R G GLGL + + +V G+ + S K Sbjct: 658 VHDTGVGIAPEDREHIFKAFAQGNPSF-RRQPGNGLGLRICQELVRLMGGRLEMTSELGK 716 Query: 801 GTLIEII--FPLYDTSH 815 G+ P + Sbjct: 717 GSTFYFTARLPRVEPPQ 733 Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 3/113 (2%) Query: 466 AIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 +I+ E G IL N + + +GYP E++ + P V Sbjct: 25 LLIDPETGAILDANPSAVRFYGYPREELCGMRIQQINTLDEPQVRAEMARARAEQRRYFR 84 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + G E + + + +L +HDI++ ++ + +L + Sbjct: 85 FQHRLCG--GEVRDVEVYSGPLELAGRQYLHSIIHDITDTRRYQRRLEVFHDL 135 >gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM 14863] gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 444 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 22/395 (5%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + E + ++ E Q+ IL+ +DGI +++ I Sbjct: 66 YREASGLARTAERRADAAHREARRAAQERLDRLLAEKAQMDLILQHMADGILLLDERRRI 125 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + N A ++ G + L + ++ L +L+ + L + Sbjct: 126 VLVNPAAERMLGVSRHEALGRDHLEVTHHF---ELDERLARVLATGRPEAL--EIRRAHP 180 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +E++L R+ + + + DI+ +Q + +++F+A V+H Sbjct: 181 QEQILEARLALAPSGGERGVLVMLRDITRSRQLE--------------QMRTEFVANVTH 226 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPLT+I GF+E + + + R + ++++LLD+S++ESGK Sbjct: 227 ELRTPLTSIQGFAETLLEGALDE--PETARHFVEIMLRESRHLGALIDELLDLSRVESGK 284 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + P E ++ + A + + T + +P I D + Q+ N++ N Sbjct: 285 FRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPDGLPLINGDPDRLVQVLSNLVEN 344 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI +TP+GG+I +S + V + V DTG G+ +L + + F ++ ++ GT Sbjct: 345 AIKYTPAGGRITLS-ARRDGDGVRIAVADTGAGIPQADLGRIFERFYRVDKARSRATGGT 403 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL +AK +V+A+ G + S KG+ +I P Sbjct: 404 GLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVILP 438 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 22/241 (9%), Positives = 51/241 (21%), Gaps = 14/241 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + ++ + +G + +G +V+ +D + +L + Sbjct: 119 LDERRRIVLVNPAAERMLGVSRHEALGRDHLEVTHHFELD--ERLARVLATGRPEALEIR 176 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L LA P ++ + +H Sbjct: 177 RAHPQEQILEAR--LALAPSGGERGVLV------MLRDITRSRQLEQMRTEFVANVTHEL 228 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E + P + + + L E L E Sbjct: 229 RTPLTSIQGFAETLLEGALDEPETARHFVEIMLRESRHL----GALIDELLDLSRVESGK 284 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 Q F + + P ++ D + V+ Sbjct: 285 FRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPDGLPLINGDPDRLVQVLSNLVEN 344 Query: 329 C 329 Sbjct: 345 A 345 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 17/217 (7%), Positives = 45/217 (20%), Gaps = 6/217 (2%) Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 + L V+ Y A + P L + Sbjct: 6 RPYRPALLWFALPPAAGVTVALAYAASGRLEAALARGPRALDLAVWLALLAALLIPPVYG 65 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-L 341 Y + ++ + R + + + + Sbjct: 66 YREASGLARTAERRADAAHREARRAAQERLDRLLAEKAQMDLILQHMADGILLLDERRRI 125 Query: 342 FYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAA 396 NP+ + + + +L+ + + + R+ Sbjct: 126 VLVNPAAERMLGVSRHEALGRDHLEVTHHFELDERLARVLATGRPEALEIRRAHPQEQIL 185 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ARL E + + ++ Q + + Sbjct: 186 EARLALAPSGGERGVLVMLRDITRSRQLEQMRTEFVA 222 >gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW] gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW] Length = 821 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 137/731 (18%), Positives = 268/731 (36%), Gaps = 42/731 (5%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 S + + + + ++ + L + + T G Sbjct: 98 ASPRFAEALAIPEVRRLEDVETALAPSDAAALHGSFRHLQETGAPFL-LTVCRADGGRVF 156 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-------KKFSHLHEI 210 LA + + E + A G ++ S + Sbjct: 157 ----QLAGRRAGTDDGEHFDLLW---LRDITATAADLARGVEARNRAEEECRRLSLALDT 209 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + I L V L L + + + Sbjct: 210 VPVPVWLRGSDLSIVWCNRAFARLLDAAPRAVVDLGLELPGGALTLPPRELAMRARNGAH 269 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + ++ ++ + L + L ++ + + E +++ Sbjct: 270 AETESRYLVVDGDRRLFRLTEMPLDRPDLQLGFGLDITGEQEIADELERHVSAHAEVLEQ 329 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 ++ L + N ++ L V ++ G LL+ + + Sbjct: 330 LGSAIAIFGADTRLRFYNRAYAQLWGLDEV-WLDSEPGYGELLEDMRARRKLTEQVDFPR 388 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + ++ L E M +P + + G + + + Sbjct: 389 WKRQRLAQFTSLL-------EPEEEMIHLPDGRTLRTLTVPHPFGGLMFVQEDVTHTLAL 441 Query: 448 EIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 E L ++ L+ + +A+ +G + N A +L+ D+ +P L + Sbjct: 442 ETSYNTLMAVQQETLDNLEEAVAVFGGDGRLKLHNPAFLRLWRLSEPDLAGEPHIAALIE 501 Query: 504 NTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 +M+ L L + + + + +L+ + + Sbjct: 502 RVRPLMDVGGDWAARRAELVAGLLDRMPRTSRMERVDGSVLTYSQVPLP---DGAVLFSA 558 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+++ + + L + E KS+F+A VS+++RTPL AI+GF+E++ NQ FGPL Sbjct: 559 MDVTDSARVEQALRATNEALETADRLKSEFIANVSYQLRTPLNAIMGFAEILNNQYFGPL 618 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NPR IEYA + + +L +VND+LD++ IE+G M L PV + V+ L + + Sbjct: 619 -NPRQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVNGVAMLTRDW 677 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A ++ + +RT I + AD + +KQ N++SNA+ FTP+GG+II+S + +EV+ Sbjct: 678 ARQQELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILS-ARRAGDEVV 736 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L VRDTG+G+ + ++ F + Q R G GLGL L K+ ++ + G+ I S P Sbjct: 737 LSVRDTGIGIPQDDQQRVFGRFERAH--HQSRSGGAGLGLSLVKSFIELHGGRVEIDSAP 794 Query: 799 AKGTLIEIIFP 809 GT + P Sbjct: 795 EHGTEVRCHLP 805 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 38/385 (9%), Positives = 99/385 (25%), Gaps = 32/385 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W + + + + + ++ + L ++ P + + Sbjct: 214 VWLRGSDLSIVWCNRAFARLLDAAPRAVVDLGL-ELPGGALTLPPRELAMRARNGAHAET 272 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ ++G L +P+ + + GFG + + L + + Sbjct: 273 ESRYLVVDGD--RRLFRLTEMPLDRPDLQL----GFG-LDITGEQEIADELERHVSAHAE 325 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-------- 257 L ++ + + F ++ + Y + ++ Sbjct: 326 VLEQLGSAIAIFGADTRLRFYNRAYAQLWGLDEVWLDSEPGYGELLEDMRARRKLTEQVD 385 Query: 258 -----KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + L PE+E H + + +L Sbjct: 386 FPRWKRQRLAQFTSLLEPEEEMIHLPDGRTLRTLTVPHPFGGLMFVQEDVTHT---LALE 442 Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 ++ + ET+D V+ G L NP+FL L + D + L Sbjct: 443 TSYNTLMAVQQETLDNLEEAVAVFGGDGRLKLHNPAFLRLWRLSEPDLAGEPHIAA--LI 500 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + R++ T + R + +T+ + Sbjct: 501 ERVRPLMDVGGDWAARRAELVAGLLDRMPRTSRMERVDGSVLTYSQVPLPDGA-----VL 555 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456 + D+ ++ + L + Sbjct: 556 FSAMDVTDSARVEQALRATNEALET 580 Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats. Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 6/209 (2%) Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 I A + + + A + R + Sbjct: 7 TYLAGIGAGILGLAGVAFLALSGSGLPPALLAVAVLALVLGLGGGLLRVRVLAEADRADA 66 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E EV L +++ A+ D + G + + ++ P L + L + Sbjct: 67 LRAEGEVRNLRALVAASPDPWCAWSTGGA-QAASPRFAEALAIPEVRRL-EDVETALAPS 124 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISE 563 + ++ + L T+ ++ L + L + DI+ Sbjct: 125 DAAALHGSFRHLQETGAPFLL---TVCRADGGRVFQLAGRRAGTDDGEHFDLLWLRDITA 181 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + A+ AE+E S L V Sbjct: 182 TAADLARGVEARNRAEEECRRLSLALDTV 210 >gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8] Length = 1230 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 119/553 (21%), Positives = 227/553 (41%), Gaps = 30/553 (5%) Query: 270 PEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + + + + G L N + + E + + Sbjct: 349 GREVEGLRKDGSLFPIRLAIGKVVLSNETLFVGFITDLTPRREMEIAVREKDEQLQSMIA 408 Query: 328 KCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 P F ++ ++ + + LT +++ D ++ + +A L+ + Sbjct: 409 NIPGIAFRCNYDINWSMQFISNRVFQLTGWQAQDFLDGTIHFPKITNADDLAKVTPT--I 466 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + R I ++ ++ + +G+ + +++ Sbjct: 467 ETAIKNHQHYNVEYR---ITDRNGEEKWVSEFGSGIYDENNNIVMLDGVIIDITESKRRN 523 Query: 445 RKMEIEVMQLCSILEAT--SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 I+ A S IA + +G+IL+ N+ L GY +E+++ ++F Sbjct: 524 AA-------YQGIVRAINYSTSIAEFSVDGLILTANQNFLSLLGYTLEEVIGLHHSIFCS 576 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 + Y + SL + + L K+ + + + + + M Sbjct: 577 EEDAKSAR-YKNKWRSLRNGEFVHGEFLRLGKDRREVWINAFYSPVKDFDNKIDKVIMFM 635 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E K+ +N L AK IAE+ +S KS FLA +SHEIRTP+ AIIGF+E++ + P Sbjct: 636 IDITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKP- 694 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 Y + I+ S +L ++ND+LD +K+E G + L F S++ V IS + L Sbjct: 695 ---DQQNYVSTINNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQ 751 Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A +K + ++ + + ++Q+ +N++ NAI FT G + + + + + Sbjct: 752 ARKKELDLQLEICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDIGS-VKLKVYAQNQDVI 810 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ L+ +PF Q S R GTGLG ++K +V+A G S Sbjct: 811 HFDVVDTGIGIAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQ 870 Query: 798 PAKGTLIEIIFPL 810 KG+ I PL Sbjct: 871 LGKGSCFSINLPL 883 Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 11/156 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L +IL DGI IN +G ILS N +LFG+ ++++ + + Sbjct: 262 KQTLATLQASETRLSTILNTAIDGIITINTKGNILSFNTVAEQLFGWTADEVIGRNINIL 321 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSL 556 + S + YL L + + + G K+ L +R+ I K L + + Sbjct: 322 MPNPHHSNHDEYLNNYLKSGQAKIIGVGREVEGLRKDGSLFPIRLAIGKVVLSNETLFVG 381 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + D++ ++ + ++ +A + Sbjct: 382 FITDLTPRREMEI-------AVREKDEQLQSMIANI 410 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 38/437 (8%), Positives = 109/437 (24%), Gaps = 50/437 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT----W 143 I+ G + + + G A ++IG + + H + + ++ + LK Sbjct: 289 INTKGNILSFNTVAEQLFGWTADEVIGRNINILMPNPHHSNHDEYLNNYLKSGQAKIIGV 348 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ + + + + S F GF + + + D++ Sbjct: 349 GREVEGLRKDGSLFPIRLAI-GKVVLSNETLFVGF-----ITDLTPRREMEIAVREKDEQ 402 Query: 204 FSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + G + + + Q + + + D Sbjct: 403 LQSMIANIPGIAFRCNYDINWSMQFISNRVFQLTGWQAQDFLDGTIHFPKITNADDLAKV 462 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 T + N + ++ + + + + S Sbjct: 463 TPTIETAIKNHQHYNVEYRITDRNGEEKWVSEFGSGIYDENNNIVMLDGVIIDITESKRR 522 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + ++ G + AN +FL L Y + I G ++ + + Sbjct: 523 NAAYQGIVRAINYSTSIAEFSVDGLILTANQNFLSLLGYTLEEVI---GLHHSIFCSEED 579 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + K + + + + + + Sbjct: 580 AKSARYKNKWRSLRNGEFVHGE---FLRLGKDRREVWINAFYSPVKDFDNKIDKVIMFMI 636 Query: 436 EDVDTRINKRKMEIEV---MQLCSI----LEATS-------DGIAII-----------NR 470 + + + + + Q S+ L S + I ++ Sbjct: 637 DITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKPDQ 696 Query: 471 EGIILSTNRAVSKLFGY 487 + + + N + L Sbjct: 697 QNYVSTINNSAKSLLHL 713 >gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1] Length = 1252 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 126/676 (18%), Positives = 238/676 (35%), Gaps = 46/676 (6%) Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 A REF G GFG++ N A R+ + + + + + + Sbjct: 80 AYTQARDYKREFPGAHGFGLIIKV-EPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 138 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 I + + LT+ + + E L Sbjct: 139 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLMLM 198 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 + Q++ + P L N +V F+ Sbjct: 199 PVYKTTTVPQDSRQRLEHLFGWSFAPILI-------NDVLNSVAGLENDVFLQISDITEQ 251 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 F + D ++ + R+ + ++ + Sbjct: 252 TPIEFFSQEVKDTYDAALQHKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFQVMAV 311 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453 + + + + +Q + + E + ++E +V Sbjct: 312 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 370 Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511 SIL + I + EGII + N A KL GY E++L + + Sbjct: 371 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 430 Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 + T + L QT TK + + +++ + L + Sbjct: 431 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 490 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+++ + + +L+ AK+ AE + KS+FLA +SHEIRTP+ ++G +++ N Sbjct: 491 LGIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 550 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + R +Y + +L ++ND+LD SKIE+GK+ L P SL + + + + Sbjct: 551 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLV 606 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732 A +K + + ++P +L D +KQ+ +N++ NAI FT G I I + Sbjct: 607 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 666 Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 E+ ++DTG+G+T + F Q +S R GTGLGL ++K +V+ G Sbjct: 667 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 726 Query: 791 KFYIFSTPAKGTLIEI 806 + + S G+ Sbjct: 727 EIGVESEFGCGSTFSF 742 Score = 45.8 bits (107), Expect = 0.030, Method: Composition-based stats. Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 17/152 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134 D G + + K +G A +++ ++ L + Sbjct: 386 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 445 Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 L+ + W + T V + L + + +GF G I Sbjct: 446 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGFLG--IAFDLTKQLKY 503 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 A + ++ ++ K + + Sbjct: 504 EAELAQAKEQAESANKAKSEFLANMSHEIRTP 535 >gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2] gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2] Length = 1141 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 161/372 (43%), Gaps = 16/372 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +K+ + +ILE+ +G ++ G + N +V ++ GY +++ + + Sbjct: 449 QKIHESEEKYRTILESIEEGYFEVDLAGRLTFFNDSVCRILGYTPDELKGMENRDYTDPE 508 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 T M E + K+ + +L + L S + + D Sbjct: 509 TSRRMYRAFNETYRTGRPANFLGYRITR-KDGEQRNLELTASLLKNSEGEPSGFRGVIRD 567 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++ K+ + L K AE + KS FLA +SHEIRTPL IIG +E+ + + Sbjct: 568 VTGRKRAEA-LHREKLTAEAANRAKSQFLANMSHEIRTPLNGIIGMTELAMMRDM----D 622 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ I N +L I+ND+LD SKIE+ + L V + A Sbjct: 623 SKHRNILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISFDPASVVENVVKAFVHRAE 682 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 +K + I S +IP ++ D ++QI +N++ NA+ FT G +I I + + Sbjct: 683 QKGLGITVSMERDIPDGVIGDPGRLRQILINLVGNAVKFTQKG-EIGIEARVAEDLDKRI 741 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V+DTG+G+ + + K F Q +S + GTGLG ++K + + G+ + Sbjct: 742 KLRFAVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGTGLGTTISKHLAELMGGEIGVE 801 Query: 796 STPAKGTLIEII 807 S G++ Sbjct: 802 SEVGTGSIFWFT 813 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 6/115 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 + +D G L ++ + + +G ++ GM D +D + + Sbjct: 470 FEVDLAGRLTFFNDSVCRILGYTPDELKGMENRDYTDPETSRRMYRAFNETYRTGRPANF 529 Query: 146 KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 +G + +L A + + E SGFRG ++ AL + Sbjct: 530 LGYRITRKDGEQRNL--ELTASLLKNSEGEPSGFRG--VIRDVTGRKRAEALHRE 580 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 34/141 (24%), Gaps = 10/141 (7%) Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E E ++ +F V G L + N S + Y + G + P+ Sbjct: 453 ESEEKYRTILESIEEGYFEVDLAGRLTFFNDSVCRILGYTPDEL---KGMENRDYTDPET 509 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 S + I + N E G+ Sbjct: 510 SR-RMYRAFNETYRTGRPANFLGY--RITRKDGEQRNLELTASLLKNSEGEPSGFRGVIR 566 Query: 436 EDVDTRINKRKMEIEVMQLCS 456 + + + + +L + Sbjct: 567 DVTGRKRAEA---LHREKLTA 584 >gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas naphthalenivorans CJ2] Length = 930 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 108/759 (14%), Positives = 221/759 (29%), Gaps = 49/759 (6%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ- 140 V W L ++ +G +G L + + + + L + Sbjct: 38 PVFLAW--GPELSLLY-NDAYLDILGERHPAALGRPLYEAWAEIRAEIEPLVNQALSGEP 94 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + +G + + P+ + +G + + + Sbjct: 95 VYFEDAVFTLRRKGADEQAWFSFSYAPVDGPDGTVAGL--YCNLTETTAKVLAEKNRQAE 152 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFS-------------------QQSPPPHLRMKNKVS 241 ++ L E +V ++ + + + V+ Sbjct: 153 TRRLYSLFEQAPSFMAVVHGSSHVYELANSAYLRMAGCQDLVGKTFREAVQGIEDQGYVA 212 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 L + YA + + + PEQ I + + E Sbjct: 213 LLDQVYATGQPFIGNRMPVIFSRHADGPPEQCFVDFIFQPITAPDGVVNGIFIEGNDVTE 272 Query: 302 YLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359 + + E + P+ + G NP+ L + Sbjct: 273 QVRTEDDLRKSRIAGLETAQQLNALLQAAPVAIVMADMHGKPLRFNPASRQLWGDHPASE 332 Query: 360 ----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 G A + + + Sbjct: 333 SIAGYAERKGWWADGSVRHGCRLEAHEWALARALQGEEAPRDTVEIEPFGKPGIRRTILN 392 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 N + + + + D + + V Q +I A + +G Sbjct: 393 CGAPVRNLDGDIIGSVAAQMDISDRVAIEAALRETVTQYRTITNAIPQIVWATRPDGYHD 452 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+ G P + + + + L+ E Sbjct: 453 YFNQQWYDYTGVPQDSTVGEGWKGLFHLEDQLQAAKNWRHSLATGEP--YEIEYRLRHHS 510 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + + T DI E K + L + K +FLA Sbjct: 511 GQYRWNLGRALPVRNEQGAIVRWMGTCTDIHEQKLAQEGL-------LQADRLKDEFLAM 563 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 ++HE+R PL I + ++ P G R E I R + +++DLLD+S++ Sbjct: 564 LAHELRNPLAPIATAAHLLSTGTLDPEGLSRLSE---VISRQAGHMTRLIDDLLDVSRVT 620 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 G++ L P+ ++ V+EA+ V+ K + + + D + Q+ N+ Sbjct: 621 WGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLVQVLANV 680 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 L+NA+ +TP GG+I + + + + VRD G+GM+ L A + F Q + Sbjct: 681 LNNAVKYTPDGGRITLRV-VEDDSHLTVCVRDNGIGMSRELLAIAFELFTQGERTSDRTQ 739 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G G+GL L + +V + G + S G+ + ++ P Sbjct: 740 GGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLP 778 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 42/434 (9%), Positives = 104/434 (23%), Gaps = 34/434 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144 W GY +++ G +G + + + + L + Sbjct: 442 VWATRPDGYHDYFNQQWYDYTGVPQDSTVGEGWKGLFHLEDQLQAAKNWRHSLATGEPYE 501 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L G Y ALP+ + R G + + D+ Sbjct: 502 IEYRLRHHSG--QYRWNLGRALPVRNEQGAIV--RWMGTCTDIHEQKLAQEGLLQADRLK 557 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + L +S L+E + + + LL Sbjct: 558 DEFLAMLAHELRNPLAPIATAAHLLSTGTLD-PEGLSRLSEVISRQAGHMTRLIDDLLDV 616 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + ++ + ++L + P + + L Sbjct: 617 SRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLVQV 676 Query: 325 TVDKCPIPF-FVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + G + LT + I ++ L + Sbjct: 677 LANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNGIGMSRELLAIAFELFTQGERTSD 736 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 R+ A + T+ ++ + ++ +P+ +D R Sbjct: 737 -----RTQGGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLPRL--PQDDGPRRF 789 Query: 443 NKRKMEI--EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + L + +++ N ++L G ++L V Sbjct: 790 DAGDALAVPARESLR---------VMVVDD-------NVDAARLLGM-FVELLGHEVFVQ 832 Query: 501 LEQNTPSVMNHYLT 514 + H + Sbjct: 833 FHPASAIECAHQVQ 846 >gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens DSM 2228] Length = 921 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 112/565 (19%), Positives = 215/565 (38%), Gaps = 46/565 (8%) Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 +E + L+ + ++ E + Sbjct: 86 EEVLEFPTGTTVWATKLSPVLEAGEVNYIVGSARNISQRKKLEEEKEELSRRYKLATSAA 145 Query: 332 PFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 V+ + + L + + D + Sbjct: 146 AIGVWKLDLVTDELIWDEYMLKIYEIDDHSDYSYQSWTEHIYIKD---RKETSSKFKKAV 202 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++ R+ T + N + G+ + + + ++ Sbjct: 203 ANGQIFDHEFRIITKS---GTFKYIKSFGKPVKNAEGKTKEVIGVNYDITERKKYEK--- 256 Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + I + + G+A+IN + N V +L GY E+ + + PS Sbjct: 257 ----KFKRIFDESLFGLALINPRTTKAVEFNNTVCELLGYTREEFAQLKIEDYEALADPS 312 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE-- 563 + L ++ + L+ T K+ L+ + I L + + DI+E Sbjct: 313 SIRFKLEKLAEGEK---LKFETKHIKKDGSLIDVLIKASSINLNGLNLVQIVYVDITEKV 369 Query: 564 ------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 K + +L A+ A + S KS+FL+ +SHEIRTP+ +IIG +E+++ Sbjct: 370 EALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQ 429 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + +Y N +G +L ++ND+LD+SKIE+G++ L E +L E V Sbjct: 430 ETEL----SEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENI 485 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QI 725 ++ L A +K + + A +P ++ D ++QI +N+L NA+ FT G +I Sbjct: 486 AEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRI 545 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++VI ++DTG+G+ + ++ F Q +S + GTGLGL ++K +V Sbjct: 546 DSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLV 605 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + GK ++ STP G+ PL Sbjct: 606 ELMGGKIWLKSTPQLGSTFYFSLPL 630 Score = 47.3 bits (111), Expect = 0.011, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 8/140 (5%) Query: 451 VMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + + T D + II N++ L N KL G E+I K L Sbjct: 7 KKEYEIVFNNTQDALFIIEVDQNKDFRFLKLNPTHEKLTGLKTENIYGKTPVEVLGAEMG 66 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEW 564 + L QT+ + + + + + + +IS+ Sbjct: 67 QAVQACYQRCLDQK--QTINYEEVLEFPTGTTVWATKLSPVLEAGEVNYIVGSARNISQR 124 Query: 565 KQEKNKLSHAKKIAEKESSH 584 K+ + + + + +S Sbjct: 125 KKLEEEKEELSRRYKLATSA 144 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 37/380 (9%), Positives = 92/380 (24%), Gaps = 27/380 (7%) Query: 85 FTWNIDA--HGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQN 141 F +D +++ K G + G +V + L ++ Sbjct: 22 FIIEVDQNKDFRFLKLNPTHEKLTGLKTENIYGKTPVEVLGAEMGQAVQACYQRCLDQKQ 81 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T + L GT ++ P+ E + G ++++ + Sbjct: 82 TINYEEVLEFPTGTTVWAT---KLSPVL-EAGEVNYIVGSAR-NISQRKKLEEEKEELSR 136 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTE 257 + G ++ ++ + + + S TE+ KD + Sbjct: 137 RYKLATSAAAIGVWKLDLVTDELIWDEYMLKIYEIDDHSDYSYQSWTEHIYIKDRKETSS 196 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 K+ + + T + K + ++N ++ E + + + Sbjct: 197 KFKKAVANGQIFDHEFRIITKSGTFKYIKSFGKPVKNAEGKTKEVIGVNYDITERK---K 253 Query: 318 GENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E D+ + N + L Y + + L Sbjct: 254 YEKKFKRIFDESLFGLALINPRTTKAVEFNNTVCELLGYTREE-------FAQLKIEDYE 306 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + I+ + + N + Sbjct: 307 ALADPSSIRFKLEKLAEGEKLKFETKHIKKDGSLIDVLIKASSINLNGLN---LVQIVYV 363 Query: 436 EDVDTRINKRKMEIEVMQLC 455 + + KME +L Sbjct: 364 DITEKVEALNKMEEYSNELK 383 >gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 370 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 178/365 (48%), Gaps = 7/365 (1%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + + +++E +D I + +G I+ N + GY ++L N Sbjct: 2 KESEERFRTVIELAADAIIAHDFDGDIVYVNELAYENLGYTKSELLSMNIMDIEPYNENY 61 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWK 565 LS + + T K + + + I + L DI+ K Sbjct: 62 NSRKRYRNKLS--IHNSYRIETSHERKYGSIYPVEVKITRIDLDSEPVILGFCRDITTRK 119 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + L AK AE S KS+ LA VSHE+RTPLT+IIGFS+++ + G L N I Sbjct: 120 QAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIGFSDIMLKGKAGKLNN-NQIN 178 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N I +SG +LD++NDLLD+SKIESGKM LH+E +SL E + + ++ + A+EK + Sbjct: 179 YLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPLASEKGLT 238 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + +I + D ++QI N++ NAI FT +G I N V DTG Sbjct: 239 LDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTNNGS-ITTEVDFVDNNY-QFSVIDTG 296 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + ++ + F Q+ +S + R GTGLGL L K +V+ + G + S +G+ Sbjct: 297 IGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKYGEGSRFT 356 Query: 806 IIFPL 810 P+ Sbjct: 357 FTIPM 361 Score = 41.9 bits (97), Expect = 0.48, Method: Composition-based stats. Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 9/138 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++E + +G +++ M + D+ + + + L N++ +T+ Sbjct: 23 DFDGDIVYVNELAYENLGYTKSELLSMNIMDIEPYNENYNSRKRYRNKLSIHNSYRIETS 82 Query: 149 LWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G+ P+++ I GF + Sbjct: 83 HERKYGSIY--PVEVKITRIDLDSEPVILGF-----CRDITTRKQAEENLIIAKLEAEAT 135 Query: 208 HEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 136 SQAKSELLANVSHELRTP 153 >gi|120435203|ref|YP_860889.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] gi|117577353|emb|CAL65822.1| two-component system sensor histidine kinase/response regulator hybrid [Gramella forsetii KT0803] Length = 1202 Score = 358 bits (918), Expect = 3e-96, Method: Composition-based stats. Identities = 135/712 (18%), Positives = 258/712 (36%), Gaps = 54/712 (7%) Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + L++ + + + + N + + P + + + F + N Sbjct: 216 FNEALEKGIPFDAELKI--VTAKNNEIWVRSFGKPEFKDGKCIRIYGAFQDI--NTEKRI 271 Query: 193 PRALGKRLDKKFSH---------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + ++ + L + V IF + M L Sbjct: 272 QLEYERTKEQYETIFKNSAVGNILVKTSGQLLQVNPATLKIFGFEDAKREEVMGLTFKDL 331 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKES 299 + K LL+ E + ++ N ++ S Sbjct: 332 IHPDFLDQSITYRSK--LLSGELDQYQFEAKYYKKNGEIVWCHSNSSIIRSNDYGESLII 389 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358 + L +E + PI V G N + + Y + Sbjct: 390 TQIEDITEKKELEFKANENAKRFKTAFEYSPIGMGVVSPEGIWQMVNQNLAGIFGYTKEE 449 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + S+ L + ++ L + R I + + + Sbjct: 450 FVNKK---SSELTHAEDLRKDSNMLKSLLEKKIESYSIEKRF--IHQSGKTIYGL-LSVS 503 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILST 477 ++ + G + +++ +E + +L S+++AT+ I + +GI+ Sbjct: 504 AVSDDEGNTLYLIGQVSDLTKRITSEKALEKSLNELESLMDATTQVSIIQTDLDGIVAKF 563 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH------YLTEILSLD-------LRQT 524 N+ L GY +++ L ++ + Y EI Sbjct: 564 NKGAENLLGYSADEVKGVFNVKNLHEDHEIELRATELSEKYNQEIKGFGVFTFQASRGHY 623 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 K K+ ++++I+ + + Y DI++ K+ + L AKK AE Sbjct: 624 DSKEWTYIRKDGTKFTVQLIVTPITDHNGKITGYLGVGSDITQLKKMEVSLIKAKKKAEA 683 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 S KS+FLA +SHEIRTPL IIGF++++ +Y I S ++DI Sbjct: 684 ASKSKSEFLANMSHEIRTPLNGIIGFTDLLMRSELEN----SQQKYMQTIYNSAISLMDI 739 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699 +ND+LD SKIE+GK+ L E L E + I +V+ A++K + + + + + R + A Sbjct: 740 INDVLDFSKIEAGKLELSEERTDLIELCDQTIDIVKHQAHKKGLEVLLNISPKLRRYVYA 799 Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754 D ++QI N+L N++ FT G ++ IS+ S E I +RDTG+G+ L+ Sbjct: 800 DAVRLRQILTNLLGNSVKFTHEGEIELNISSKTISGNEHELLFIFSIRDTGIGIAPQNLK 859 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 K F Q S + G+GLGL ++ +++ K + S +G+ Sbjct: 860 KIFSAFDQEDASTTRKYGGSGLGLTISNKLLNLMDSKLELTSVLNEGSTFSF 911 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 33/379 (8%), Positives = 89/379 (23%), Gaps = 28/379 (7%) Query: 93 GYLKEISEELPKTIGN---YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147 G L +++ K G +++G+ D+ +D + L + + + Sbjct: 300 GQLLQVNPATLKIFGFEDAKREEVMGLTFKDLIHPDFLDQSITYRSKLLSGELDQYQFEA 359 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G V + I S + + + + K+F Sbjct: 360 KYYKKNGEI--VWCHSNSSIIRSND--YGESLIITQIEDITEKKELEFKANENAKRFKTA 415 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLL 262 E V + + V+ + H +D+ K LL Sbjct: 416 FEYSPIGMGVVSPEGIWQMVNQNLAGIFGYTKEEFVNKKSSELTHAEDLRKDSNMLKSLL 475 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEG 318 + S ++ F + + ++ + + ++ Sbjct: 476 EKKIESYSIEKRFIHQSGKTIYGLLSVSAVSDDEGNTLYLIGQVSDLTKRITSEKALEKS 535 Query: 319 ENLTPETVDK-CPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 N +D + + N L Y + + + + D Sbjct: 536 LNELESLMDATTQVSIIQTDLDGIVAKFNKGAENLLGYSADEVKGVFNVKNLHEDHEIEL 595 Query: 377 DNNAIKPVMLYRSDR--------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + ++ T + I + + Sbjct: 596 RATELSEKYNQEIKGFGVFTFQASRGHYDSKEWTYIRKDGTKFTVQLIVTPITDHNGKIT 655 Query: 429 PQNGIEPEDVDTRINKRKM 447 G+ + + + + Sbjct: 656 GYLGVGSDITQLKKMEVSL 674 Score = 51.2 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 20/217 (9%), Positives = 63/217 (29%), Gaps = 11/217 (5%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110 + + E +N N + F + PI V + G + +++ L G Sbjct: 393 EDITEKKELEFKANENAKRFKTAFEYSPIGMGV-----VSPEGIWQMVNQNLAGIFGYTK 447 Query: 111 FKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPI 168 + + + +++ + +++ + LL+++ ++ + G +Y + ++A + Sbjct: 448 EEFVNKKSSELTHAEDLRKDSNMLKSLLEKKIESYSIEKRFIHQSGKTIYGLLSVSA--V 505 Query: 169 YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 G + + L+ ++ + ++ Sbjct: 506 SDDEGNTLYLIGQVSDLTKRITSEKALEKSLNELESLMDATTQVSIIQTDLDGIVAKFNK 565 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 H+D ++ L Sbjct: 566 GAENLLGYSADEVKGVFNVKNLHEDHEIELRATELSE 602 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 18/111 (16%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPN--N 131 D G + + ++ +G A ++ G +R ++S+ + + Sbjct: 553 QTDLDGIVAKFNKGAENLLGYSADEVKGVFNVKNLHEDHEIELRATELSEKYNQEIKGFG 612 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 R + + T +GT + L PI N + +G+ G G Sbjct: 613 VFTFQASRGHYDSKEWTYIRKDGT--KFTVQLIVTPITDHNGKITGYLGVG 661 >gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC 19718] gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC 19718] Length = 1229 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 104/430 (24%), Positives = 185/430 (43%), Gaps = 29/430 (6%) Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 W+ LA F + + + ++ I+ + S++E D Sbjct: 369 WDEIGQLASAFNMMTERLDISYRHLEARVAERTARLEQLNAELAIKEEETRSVVEHMVDC 428 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-------- 516 + + G++LS N + KLFGY VE+ + + V + + + +Y+ Sbjct: 429 VVTTDERGVMLSVNPVMEKLFGYTVEEAIGQNVAVLVPKPDRDMHEYYMQRYCHTGYGQQ 488 Query: 517 ------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEK 568 L + G K+ LL + + + + + ++ M D+ E + + Sbjct: 489 YVGRPQQPGGHHVGLGREVEGVHKDGTLLPVYLAVSEYFVGDKRHFTGIMRDMREHVKIR 548 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L A++ AE + KS FLA +SHEIRTP+ +IG +V+ E + Sbjct: 549 QDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLSQTSLSSY----QKEMTD 604 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S ++L+I+ D+LD SKIE+G++ + P+SL++ V A + A K + + Sbjct: 605 LIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERACGTLTHMAASKEVELIL 664 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHF---TPSGGQIIISTTHTSNEE-----VIL 739 +P + D ++QI +N+++NAI F G +I+ V+ Sbjct: 665 FVDPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIVKAVPADRANGDVVTVLF 724 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V D G+GM + E+ PF Q S R GTGLGL + + +V+ G + S P Sbjct: 725 QVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICRRLVELMKGDITVESQPG 784 Query: 800 KGTLIEIIFP 809 KG+ + P Sbjct: 785 KGSTFKARIP 794 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 23/154 (14%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--------------PNNHIG 134 D G + ++ + K G + IG + + D ++G Sbjct: 432 TDERGVMLSVNPVMEKLFGYTVEEAIGQNVAVLVPKPDRDMHEYYMQRYCHTGYGQQYVG 491 Query: 135 DLLKRQNTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + G +GT L V + ++ + + R F+G I+ R Sbjct: 492 RPQQPGGHHVGLGREVEGVHKDGTLLPVYLAVSEYFVGDK-RHFTG-----IMRDMREHV 545 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 R ++ + ++ K + + Sbjct: 546 KIRQDLEQARRDAELANQAKSAFLAAMSHEIRTP 579 >gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91] Length = 1221 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 105/431 (24%), Positives = 193/431 (44%), Gaps = 31/431 (7%) Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 W+ LA F + + + ++ I+ + S++E D Sbjct: 369 WDEIGQLAGAFDMMTERLAISYRHLEARVAERTAQLERLNAELAIKEEETRSVVEHMVDC 428 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ- 523 + + G++LS N + KLFGY VE+ + + ++ + + S+ +Y+ Q Sbjct: 429 VVSTDDRGVMLSVNPVMEKLFGYTVEEAIGQNVSILVPEPDRSMHEYYMQRYCETGYGQQ 488 Query: 524 -------------TLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEK 568 L + G K+ ++ L + + + + ++ M D+ E + + Sbjct: 489 YVGRPQLPGGHNVGLGREVEGVRKDGTVIPLYLAVSEYFVGDERHFTGIMRDMREHVKIR 548 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L A+ AE + KS FLA +SHEIRTP+ +IG +V+ E + Sbjct: 549 QDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLDQTSLSTY----QREMTD 604 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S +L+I+ D+LD SKIE+G++ + P+SL++ V A + A K + + Sbjct: 605 LIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTHMAASKEVELTL 664 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIIST--THTSNEEVI--- 738 +P +L D ++QI +N+++NAI F+ SG G++ + + +V+ Sbjct: 665 FVDPALPEGVLGDALRLRQILINLINNAIKFS-SGMSRLGRVAVRASPAEEVDGDVVTVM 723 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +V D G+GM + E+ PF Q S R GTGLGL + + +V+ G+ + S P Sbjct: 724 FQVIDNGIGMDDAARERLFTPFSQGDASTTRRFGGTGLGLIICRRLVELMKGEISVESKP 783 Query: 799 AKGTLIEIIFP 809 G++ + P Sbjct: 784 DVGSVFTVRIP 794 >gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 704 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 103/372 (27%), Positives = 171/372 (45%), Gaps = 11/372 (2%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++++E E +L S+++A D + + +G + S+ P E ++ + L Sbjct: 192 EQELEQERNKLDSLIQAVPDLLFEVGLDGRYYACYARHSEQLAAPAEQLVGRTVREMLPP 251 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDI 561 V L E + + + E L + + + + DI Sbjct: 252 RAAEVCLEALQEAEATGHSHGRQFFLPLPSGE-IWFELSVARKTGPVEDQPRFVVLSRDI 310 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ KQ + +L A+ AE S KS+FLA +SHEIRTP+ +IG + ++ P Sbjct: 311 SDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTELSP---- 366 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y I+ S N ++ ++ D+LD+S+IE+G+M L SL + E + Q N+ Sbjct: 367 EQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQINQ 426 Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739 K+I I T A ++P + D +QI LN+L NAI FT GG I + V++ Sbjct: 427 KKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTITAQLVTSEENRVLI 486 Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+GM LE+ PF Q NS R G+GLGL + + + + G+ + S Sbjct: 487 HLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAESG 546 Query: 798 PAKGTLIEIIFP 809 G+ + P Sbjct: 547 AEGGSTFHVELP 558 Score = 38.5 bits (88), Expect = 4.5, Method: Composition-based stats. Identities = 8/142 (5%), Positives = 33/142 (23%), Gaps = 6/142 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + + G + + A +++G + ++ + + + Sbjct: 212 LLFEVGLDGRYYACYARHSEQLAAPAEQLVGRTVREMLPPRAAEVCLEALQEAEATGHSH 271 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203 G+ P+ + + +L+ + + F ++ Sbjct: 272 GRQFFLPL--PSGEIWFELS---VARKTGPVEDQPRFVVLSRDISDRKQHEKELLEARYA 326 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 327 AEAASRAKSEFLANMSHEIRTP 348 >gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032] Length = 580 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 158/363 (43%), Gaps = 23/363 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E GI +I++ G I NR K F + K + Sbjct: 236 EMQRDRLQTVIENIGAGIILIDKMGYIHLVNRTFRKQFKVQKHIYMHKLYHEAFTHEEII 295 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + + +R+ L L E + + + L HD++E K Sbjct: 296 ELI-DEIFMTETKVRKFL---RLAVDIERRYFQVDGVPILSTDDEWKGIVLVFHDVTETK 351 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + + DF+A VSHE++TP+T+I GFSE + + E Sbjct: 352 QLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTE 395 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + I + + ++ DLLD+SKIE + L+ + + E + E L+ A EK I Sbjct: 396 FLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQ 455 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + ++AD +KQI LN+++NA+ +TP GG + IS V DTG Sbjct: 456 LHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAY-EFDVADTG 514 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GM E+ + + F +I + GTGLGL + K +V+A+ G + S KGT Sbjct: 515 IGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFT 574 Query: 806 IIF 808 + Sbjct: 575 VSL 577 >gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 1079 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 105/544 (19%), Positives = 216/544 (39%), Gaps = 31/544 (5%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 ++++ ++ + Q + E E ++ + Sbjct: 411 SLDVTEHKRAQQQLQEAKDQLEVRVEERTGELKKAQKILASRERHFRRLIENVTDIITIV 470 Query: 337 SHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + Y +P+ L +SV+D+ ++ + L++ T Sbjct: 471 DADGIVGYTSPAAEKLFG-RSVEDMVGHDIREFVVQDDLRHIDLP----TLHQQFGTTTP 525 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R+ ++ + + E+ + E E L Sbjct: 526 VEYRV----YDHAGQIQVLESFIERFENESGLEQFILCSRLITQRKRA----EEENRVLS 577 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ + I + G I N + GY ++++ K V TP + + + Sbjct: 578 MVVAQNPSSVVITDVHGQIEYVNPYFEQATGYRFDEVVGKNPRVLNAGKTPKQVFTQMWQ 637 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 + + + K+ L +++ + + +I+E K+ Sbjct: 638 TILDG--HVWQGEFVNRKKDGTLYDESVLVSPIKNDQGEISHFVALKENITELKKA---- 691 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +K AE+ + KS+FL+R+SHE+RTPL AI GFS+++ + R PL N ++ ID Sbjct: 692 ---RKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSSRKNPL-NDKHRSMVEQID 747 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690 +G +L+++N++LD+++IE+GK++L E V ++E + L+ A + ++ + Sbjct: 748 GAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTFHSCCG 807 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMT 749 P + AD KQ+ +N+LSNA + GG + I + + +V D G+G+ Sbjct: 808 EQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDNGLGIA 867 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + ++ PF ++ EGTG+G+ + K +V+A G+ S +G+ P Sbjct: 868 EEKQKQLFVPFARL-AQDSENIEGTGIGMTITKQLVEAMGGQIDFESRYGQGSTFWFTLP 926 Query: 810 LYDT 813 L D Sbjct: 927 LADE 930 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 34/349 (9%), Positives = 93/349 (26%), Gaps = 48/349 (13%) Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRAL------------- 196 ++G +Y +++ PI++ + E + + R + Sbjct: 383 VDGETMY--VEVHGYPIFNDHGELVNIIEYSLDVTEHKRAQQQLQEAKDQLEVRVEERTG 440 Query: 197 --------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245 ++ F L E ++ + +++ V Sbjct: 441 ELKKAQKILASRERHFRRLIENVTDIITIVDADGIVGYTSPAAEKLFGRSVEDMVGHDIR 500 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + +DD+ + L ++ P + + + + +N S +++ Sbjct: 501 EFVVQDDLRHIDLPTLHQQFGTTTPVEYRVYDHAGQIQVLESFIERFENESG-LEQFILC 559 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 + +E + V + P + HG + Y NP F T Y+ + + Sbjct: 560 SRLITQRKRAEEENRVLSMVVAQNPSSVVITDVHGQIEYVNPYFEQATGYRFDEVVGKNP 619 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + + D + + + N Sbjct: 620 RV----LNAGKTPKQVFTQMWQTILDGHVWQGE---FVNRKKDGTLYDESVLVSPIKNDQ 672 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVM-----------QLCSILEATS 462 E ++ + + +++ E +L + L A + Sbjct: 673 GEISHFVALKENITELKKARKQAEEANRAKSEFLSRMSHELRTPLNAIN 721 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 74/258 (28%), Gaps = 36/258 (13%) Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 G L N F + + + I +S LL + + + + + +A Sbjct: 210 EAGRLQEYNKRFSETYRQT--ELLSIVLSVSLLLVIGGVVLYRSRRIFAERQRYQQELAT 267 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + +E E + R ++++ + L + Sbjct: 268 ---------------------INENLESMVQSRTRQLEGEISERRKTEQQLSEQARFLTT 306 Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNHY 512 LE+ +I+ + ++ N A L + P + Sbjct: 307 TLESLDHPFLVISVADSKVVMANSAARDLCDDWHQPTCYARTQRLNGNCSDGDHPCTLAR 366 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK 568 + L + + + + + + + + + + D++E K+ + Sbjct: 367 VKSELK-----PITIDYVHPNVDGETMYVEVHGYPIFNDHGELVNIIEYSLDVTEHKRAQ 421 Query: 569 NKLSHAKKIAEKESSHKS 586 +L AK E ++ Sbjct: 422 QQLQEAKDQLEVRVEERT 439 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 5/150 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 D HG ++ ++ + G +++G ++ + + + W G+ Sbjct: 590 TDVHGQIEYVNPYFEQATGYRFDEVVGKNPRVLNAGKTPKQVFTQMWQTILDGHVWQGEF 649 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205 +GT + ++ PI + E S F I + + + + S Sbjct: 650 VNRKKDGTLYDESVLVS--PIKNDQGEISHFVALKENITELKKARKQAEEANRAKSEFLS 707 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 + + + + P Sbjct: 708 RMSHELRTPLNAINGFSQLMLSSRKNPLND 737 >gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 938 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 109/517 (21%), Positives = 211/517 (40%), Gaps = 28/517 (5%) Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 +S RN+ + + E D+ I G +++ N + + V++I Sbjct: 280 VSLRNNLASQKVLENNSKEISELFDQQNI-LLKELKGFVYFHNSAGKITRVSDEVEEILG 338 Query: 363 AG---GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 L + +D I+ + + ++ + + + Sbjct: 339 IPKSIFLDAFAPDSQQADVVKIREKVYEVLGSSKSHIEFEYDFVRPDGKEIR-VKVFEKL 397 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + GI + + +K+ +L ++E D I I + +G ++ + Sbjct: 398 IFHKNGKFNGGLGICTDITSQFESSQKLIQSENRLRVVMENIPDVIFIYDNDGNVID-SH 456 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK----E 535 ++ G+ + K +V L + H QT+++ + E Sbjct: 457 VKEQIPGWDKSSL-GKNISVLLPPDQRDETIHAFQLARKYGEIQTVDRRLNLPSGAKYFE 515 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + L + D++ K + L A K A++ S KS+FLA +SHE Sbjct: 516 IRYFPL--------DENRMMSLAKDVTNQKVWEKGLIEAMKAADEASRAKSEFLANMSHE 567 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ ++G +++ + + +Y I SG+ +L I+ D+LD SKIE+GKM Sbjct: 568 IRTPMNGLLGIIDLLDHTNL----DEEQSQYLEIIKNSGSSLLSIIKDILDYSKIEAGKM 623 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714 +L+ + E + + I + A EK I ++T D + Q+ LN++ N Sbjct: 624 DLNPTLGNPAEELEKQIQIFYGLAQEKSITLKTDIGKAAYGLFETDFDRINQVILNLVGN 683 Query: 715 AIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 A+ FTP GQ+ +S + ++V+D+G+G+ + PF Q+ +S Sbjct: 684 ALKFTPQNGQVTVSMDAEQIENELHYLKIQVKDSGIGIPEKHIPSLTDPFFQVESSSTRS 743 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +GTGLGL +AK +V+ G+ I ST +G+ Sbjct: 744 YQGTGLGLAIAKKIVELMGGELNINSTVGEGSEFSFS 780 >gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 928 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 117/526 (22%), Positives = 205/526 (38%), Gaps = 38/526 (7%) Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 V+ G + N F + + +L + Sbjct: 11 LKALVEALEDSILAADKFGRIMVCNDRFRAMWNLDDPALLGSDTAAFFDSITAQLDGCAS 70 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 K + T A + + + + I + T Sbjct: 71 GKVYPEDFAPNTGDGEKAAPVVLSLKDGRVIEIRTAALFPGAGQD---GRLWIFRDVTAT 127 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PF 497 R +R ++ + QL I+E + I++++GII+ N+A+ + E I+ K + Sbjct: 128 RQRERYLQDSIRQLTDIIEFLPEPTMIVDKDGIIVVWNKAIEDVTEVKKEAIVGKGNYEY 187 Query: 498 TVFLEQNTPSVMNHYL--------TEILSLDLRQTLEKITLGST---KEEKLLSLRIIIK 546 + ++ ++ + L + L Sbjct: 188 ALPFYNERRPILIDWVLDDRVPIEQYTFVQRKGEMLFGEIYTPNAFGGKGAYLWGVAAPL 247 Query: 547 KLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K + M +++E K + +L AK AE + KS+FLAR+SHEIRTP+ +I+ Sbjct: 248 KDSSGNIVGAVECMRNVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSIL 307 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G SE+++ + Y + SG ++L I+ND+LD SKIE+G+++L P L Sbjct: 308 GMSELLEETSL----DFDQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDL 363 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 + V ++ L A EK + + A + R +L D ++QI +N+LSNAI FT G Sbjct: 364 IDLVEGIGRILGLKAQEKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAIKFTEHG- 422 Query: 724 QIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++ + E +++ V DTG+G+ + E + F Q S + GTGLGL Sbjct: 423 EVTLHILPGPLPADKETILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLA 482 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLI--EIIF------PLYDTSHPH 817 ++K +++ G I S GT + P YD S H Sbjct: 483 ISKKLIELMDGGIRIESNEGAGTTFLLTVRLKHTNEPPAYDPSDTH 528 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 6/135 (4%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-----N 504 L +++EA D I ++ G I+ N ++ +L F + + Sbjct: 7 SAEFLKALVEALEDSILAADKFGRIMVCNDRFRAMWNLDDPALLGSDTAAFFDSITAQLD 66 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISE 563 + Y + + S K+ +++ +R + D++ Sbjct: 67 GCASGKVYPEDFAPNTGDGEKAAPVVLSLKDGRVIEIRTAALFPGAGQDGRLWIFRDVTA 126 Query: 564 WKQEKNKLSHAKKIA 578 +Q + L + + Sbjct: 127 TRQRERYLQDSIRQL 141 >gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 600 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 130/556 (23%), Positives = 223/556 (40%), Gaps = 50/556 (8%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTK 353 + + A E ++ + + G Y + + + Sbjct: 59 LALAYMLVRLRESKLEAEAALVENQHRFDMAFAGARCGIWDWDLGENRIYWSSAMFDMVG 118 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 K + + D AI + S + +A ++ + + M Sbjct: 119 LKQPS---KRLSPNEIKAMAHPDDAGAIDEIANAASRPSRSYDTA--FRLRHADGSWVWM 173 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 GI + D +I + ++ +L +E+ + + + EG Sbjct: 174 HAKGQVWGGGRAAGERLVGITIDITDQKIAEERVHEANERLRDAIESVGEAFVLWDAEGR 233 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + + N + + P E + + Sbjct: 234 LATANSKFGEFLNL--GEDYMHPGAPRGEMMQRAGVGDAWPVSQDGGEAGAGVHEI--RL 289 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK------------------ 575 + L + ++ S + DI+ K+++ L+ K Sbjct: 290 PTGRWLQIS---ERRTKSGGHVNVGTDITAIKEQEAALTDNKVALEKTVRDLETSRRKLQ 346 Query: 576 -----------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 AE + KS+FLA +SHE+RTPL AIIGFSE++++ FG L Sbjct: 347 EQARQLVDLAEKYASEKTRAEAANRSKSEFLANMSHELRTPLNAIIGFSEIMESGLFGEL 406 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G+P+Y EYA I SG +L+++ND+LD+SKIE+G+M L +P+ L E V E++ LV Sbjct: 407 GSPKYKEYAGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELSEVVEESLRLVSGR 466 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A ++ I +P + AD R+VKQ+ LN+LSNA+ FTP+GG I + TS V Sbjct: 467 AEVAKVHIANEMGP-LPTVDADKRAVKQVLLNLLSNAVKFTPAGGSIHLR-GETSGRFVT 524 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ L K +PF Q+ + +GTGLGL L++++V+ + G + ST Sbjct: 525 ISVEDTGIGIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLVELHGGALVLESTE 584 Query: 799 AKGTLIEIIFPLYDTS 814 GT + PL + Sbjct: 585 GVGTKVSFTLPLTAEA 600 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 9/173 (5%), Positives = 37/173 (21%), Gaps = 8/173 (4%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + + GI + + + A+ Sbjct: 55 SGGYLALAYMLVRLRESKLEAEAALVENQHRFDMAFAGARCGIWDWDLGENRIYWSSAMF 114 Query: 483 KLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + G P + + + ++ ++ + + + Sbjct: 115 DMVGLKQPSKRLSPNEIKAMAHPDDAGAIDEIANAA--SRPSRSYDTAFRLRHADGSWVW 172 Query: 541 LRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + DI++ K + ++ A + + Sbjct: 173 MHAKGQVWGGGRAAGERLVGITIDITDQKIAEERVHEANERLRDAIESVGEAF 225 >gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM 12260] Length = 925 Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats. Identities = 125/644 (19%), Positives = 228/644 (35%), Gaps = 33/644 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 I R + K LD L + + R+ Sbjct: 2 IFLPTRRRVSASPVPKVLDFPLMDLLHSCPDPIWCIRLPDFKLVFLT-LGAERLLGIPLG 60 Query: 243 LTEYYAHKDDVLKTEKYPL------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 A ++L E PL E + + + ++ Sbjct: 61 ELPLRASVGELLVPEDLPLWKRFLQEAQERGEARAELRVRRGDGGEVWLDLRGVLTRDER 120 Query: 297 KESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351 + + + E ++ F + G + N +FL L Sbjct: 121 GQPRYLTGIAVDVSDRRRAEDALRRSEARWRAVLNSTGDAFLMADQGGAITDCNEAFLRL 180 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 Y+ + + GLS P+ L C + L Sbjct: 181 GGYRKEEVL----GLSLRRVVPEDQLGILDYQWHLGALQGQCD----YEVDLLCRDGTRL 232 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + Q E + +R + + +V L ++L+ + + + Sbjct: 233 PVWVQADRV-LQEGEPPLLFAFLRDLSASRKVQEEQRHQVAFLRTLLDTIPSPVFYKDAQ 291 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G L NRA L G ++++ + FL + + E+L + E Sbjct: 292 GRYLGCNRAFLDLVGRDLKEVEGRTAQEFLPASLLPQVVRSDMELLRHPGTLSFETPWQA 351 Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 E+ ++ + M +I+E K+ + L A+ AE S K FL Sbjct: 352 GKGGERHFVVQKASFGDEREGVLGFVGVMVEITERKRMEEDLREARDRAESSSEAKMAFL 411 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 + +SHEIRTP+ AI+G SE++ + + E I + +++++ D+LD+SK Sbjct: 412 SHMSHEIRTPMNAIVGLSELLLEEC----PHDPQREQLRLIREASGSLMELLGDILDLSK 467 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIA 708 IE+G++ L EP L+E SL+ + A K ++ A + L D ++Q+ Sbjct: 468 IEAGRLELDHEPFDLEETCRSVCSLLGMEAKRKGLVFSWDVAPSAQGFFLGDSFRLRQVL 527 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 N++ NA+ FT G ++ ++ E +V RV+DTG+G+ LE+ + F Q Sbjct: 528 WNLVGNAVKFTERG-RVHVTAWGEQGEGGARKVHFRVQDTGIGILPVNLERIFEYFSQGE 586 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 R GTGLGL +++ +V A G+ + S P G++ Sbjct: 587 TLLHRRFPGTGLGLSISRHLVRAMGGEILVASEPGAGSVFSFSL 630 Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 39/375 (10%), Positives = 95/375 (25%), Gaps = 21/375 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTT 148 L ++ + +G ++ + + ++ + + + +R Sbjct: 40 PDFKLVFLTLGAERLLGIPLGELPLRASVGELLVPEDLPLWKRFLQEAQERGEARAELRV 99 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G V +DL + + G + +R + ++ + Sbjct: 100 R---RGDGGEVWLDLRGVLTRDERGQPRYLTGIAV--DVSDRRRAEDALRRSEARWRAVL 154 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL-LTSE 265 + + I L K +V L+ +D L Y L + Sbjct: 155 NSTGDAFLMADQGGAITDCNEAFLRLGGYRKEEVLGLSLRRVVPEDQLGILDYQWHLGAL 214 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL---T 322 + + D + + + + + R+ + +E + Sbjct: 215 QGQCDYEVDLLCRDGTRLPVWVQADRVLQEGEPPLLFAFLRDLSASRKVQEEQRHQVAFL 274 Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D P P F G N +FL L + G + L Sbjct: 275 RTLLDTIPSPVFYKDAQGRYLGCNRAFLDLVGRDLKEV---EGRTAQEFLPASLLPQVVR 331 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + L R T + Q + ++ + G+ E + + Sbjct: 332 SDMELLRHPGTL----SFETPWQAGKGGERHFVVQKASFGDEREGVLGFVGVMVEITERK 387 Query: 442 INKRKMEIEVMQLCS 456 + + + S Sbjct: 388 RMEEDLREARDRAES 402 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 33/352 (9%), Positives = 91/352 (25%), Gaps = 21/352 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + +E + G +++G+ L V + ++ L Q + L Sbjct: 165 DQGGAITDCNEAFLRLGGYRKEEVLGLSLRRVVPEDQLGILDYQWHLGALQGQCDYEVDL 224 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT L V + + + E F + + + L + Sbjct: 225 LCRDGTRLPVWVQADRVL---QEGEPPLL--FAFLRDLSASRKVQEEQRHQVAFLRTLLD 279 Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + +K + + + + + + Sbjct: 280 TIPSPVFYKDAQGRYLGCNRAFLDLVGRDLKEVEGRTAQEFLPASLLPQVVRSDMELLRH 339 Query: 267 S-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 +L + + + + + + ++ + +E + Sbjct: 340 PGTLSFETPWQAGKGGERHFVVQKASFGDEREGVLGFVGVMVEITERKRMEEDLREARDR 399 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + +FL ++ + GLS LL D + + Sbjct: 400 AESSSEAKM------------AFLSHMSHEIRTPMNAIVGLSELLLEECPHDPQREQLRL 447 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + + + + L + PF+ G+E + Sbjct: 448 IREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAKR 499 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 52/227 (22%), Gaps = 15/227 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWY 144 + DA G + +G ++ G + L +LL+ T Sbjct: 285 VFYKDAQGRYLGCNRAFLDLVGRDLKEVEGRTAQEFLPASLLPQVVRSDMELLRHPGTLS 344 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKK 203 +T W + A + RE G GF G++ + + Sbjct: 345 FET-PWQAGKGGERHFVVQKAS--FGDERE--GVLGFVGVMVEITERKRMEEDLREARDR 399 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLL 262 E K S + P + L E H Sbjct: 400 AESSSEAKMAFLSHMSHEIR-------TPMNAIVGLSELLLEECPHDPQREQLRLIREAS 452 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 S L + D I + L+ + L Sbjct: 453 GSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAKR 499 >gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio vulnificus YJ016] Length = 1328 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 104/498 (20%), Positives = 198/498 (39%), Gaps = 27/498 (5%) Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + +Y L + T S + + + ++L + K +++ Sbjct: 341 QVSIAIYRDDKLIRIAGAGYDDT--ISREISDQSSTQLSVLLSDKPYSMKSLQGKYTTHV 398 Query: 390 DRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI---------EPEDVD 439 + + + N++ + + + Sbjct: 399 NGGVLELNEIYYFPLCVNKQPVALLELGTVDTLTPLQYQWLSQMLDDLSVSIQLSQNVEL 458 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R ++K+ + IL AT + + ++ +G L+ N S+L G + +I+ + Sbjct: 459 QRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHEIVGRTPIE 518 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 Q S + + LS + + + + + + S Sbjct: 519 VFSQQDASHHFTQVHQELSQE-QCSKNYELSLFDSQGGCRDMLVCEASFNNSQGRVSGIV 577 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D++E KQ +++L AK A+ S K DFLA +SHEIRTP+ AI+G + + N Sbjct: 578 GILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL 637 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +P +Y I+ S +L I+ND+LD SKIE+GK+++ SLDE +++ Sbjct: 638 ----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVI 693 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----T 730 A EK I +P ++ D + Q+ +N+ NA+ FT G +I++S Sbjct: 694 SFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKG-EILVSVMPESQ 752 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + + V+DTG+G+ ++ F Q S GTGLGL ++K +V+ G Sbjct: 753 SSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGG 812 Query: 791 KFYIFSTPAKGTLIEIIF 808 + + S G+ Sbjct: 813 QLSVSSAVGMGSTFTFTI 830 >gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1] Length = 1044 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 119/642 (18%), Positives = 230/642 (35%), Gaps = 37/642 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 I + + + + S + + R + + Sbjct: 257 IYRQVQRSESRLRAVVDTAVDGIVMIDGRGSIVSFNGAAERLLGWTAQEVLGRSASLLMP 316 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE- 301 + + K SS + Q + G + F Sbjct: 317 ASGCDGEGGSLEKQLAAGFAGLLGSSR--DVHALHKDGTQIAVRLAVGRVAIAGDPLFVG 374 Query: 302 -YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSV 357 R + E ++ P F + + S LT + Sbjct: 375 FVTDIRERRQMLQSLRRSEEQYRTLINNVPGTTFRCLYDGKWTPLLLSRSIKELTGWTEQ 434 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 D + G L+ A A L R +A + + ++ Sbjct: 435 DFTDGLTGWDRLIHAEDRDRLEAAVSHSLSRRQ----TYNADYRLLHRDGST-RWVSETG 489 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIIL 475 N+ E +G+ + + + A +A I + G +L Sbjct: 490 RGVFNEHDELTWIDGVIMDQT-------AARARNAEFEGTVRAIDLSLATIEYDLLGQVL 542 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGST 533 NR LFGY ++++ + +F E + + + + L Sbjct: 543 RANRNFLDLFGYRLDEVAGRHHGMFCEPGYAHTPEHEQFWRRLAEGEFQAG---EFLRCG 599 Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 +E + + ++ + + + DIS ++ +L AK+ AE ++ +S FL Sbjct: 600 REGRRIWVQATYNPIRDADGRPYKIVKLLTDISAQRKLAQELVLAKEHAEAAAAARSTFL 659 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ AIIGF+E ++ P Y + + + +L ++ND+LD +K Sbjct: 660 ANMSHEIRTPMNAIIGFTEALRETALQPT----QARYLDTVHYAARSMLRLLNDILDTAK 715 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 ++ G + L E S+ E + ++ +++ A+ K + +R + + P + D V+QI Sbjct: 716 LDKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPAALRGDGMRVQQIL 775 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +N+L NA+ FT G +++ + + L V DTG+G+ ++ + PF Q S Sbjct: 776 VNLLGNAVKFTERG-HVLLRVRYE-QGVLQLDVHDTGIGIAPEKIHRIFDPFAQADASTT 833 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLG +++ + + G + ST GT+ E+ PL Sbjct: 834 RRFGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLPL 875 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 36/372 (9%), Positives = 88/372 (23%), Gaps = 25/372 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTW 143 ID G + + + +G A +++G + D + Sbjct: 282 IDGRGSIVSFNGAAERLLGWTAQEVLGRSASLLMPASGCDGEGGSLEKQLAAGFAGLLGS 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +GT + V + + + I F GF V R +R +++ Sbjct: 342 SRDVHALHKDGTQIAVRLAVGRVAIAGD----PLFVGF--VTDIRERRQMLQSLRRSEEQ 395 Query: 204 FSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + L G + + + + ++ +D Sbjct: 396 YRTLINNVPGTTFRCLYDGKWTPLLLSRSIKELTGWTEQDFTDGLTGWDRLIHAEDRDRL 455 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 S + + + + + N E + + Sbjct: 456 EAAVSHSLSRRQTYNADYRLLHRDGSTRWVSETGRGVFNEHDELTWIDGVIMDQTAARAR 515 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + T +D G + AN +FL L Y+ + G + P Sbjct: 516 NAEFEGTVRAIDLSLATIEYDLLGQVLRANRNFLDLFGYRLDEVAGRHHG---MFCEPGY 572 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + ++ A + + + + Sbjct: 573 AHTPEHEQFWRRLAEGEFQAGE---FLRCGREGRRIWVQATYNPIRDADGRPYKIVKLLT 629 Query: 436 EDVDTRINKRKM 447 + R +++ Sbjct: 630 DISAQRKLAQEL 641 >gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium] Length = 823 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 105/449 (23%), Positives = 194/449 (43%), Gaps = 25/449 (5%) Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + D A + + + + L + I + + E Sbjct: 379 DEKGSVAAILAMDVKTEQFRAHVASARSDAH--LMLLIIGVLIVSATTIILSSEDSTKEI 436 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D ++ + + + +++ + I + +GI ++ +V K+ GY ++++ K F Sbjct: 437 KDNDE---RLRLAIERFNEVVDNALEWIWETDSKGIYTYSSASVEKILGYTPQEVVGKFF 493 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 F + L +++ K+ + L + L Sbjct: 494 YDFYSNEEKERLKE-LAGLITKKKEPFHRFENRNIHKKGNFVWLLTSGIPMVDKQGNFLG 552 Query: 558 MH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D+SE K+ + ++ K AE+ + K+ FLA +SHEI +PL AI+GFSE++ Sbjct: 553 YRGSNLDVSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKT 612 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N EY + I + L+L I+ND+LD SKI++ ++ +L+ + ++ Sbjct: 613 PL----NDTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLL 668 Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 +V+ A E + + IP++ D +KQ+ LN+LSNA+ FT G I IS Sbjct: 669 VVKGKAKE-NVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQGS-IEISVNTE 726 Query: 733 ----SNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +E+V + V+DTG+G+ + + PF Q S GTGLGL +A+A+ Sbjct: 727 KHFLEDEQVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARAL 786 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 V+ GK ++ S+P KG+ L + Sbjct: 787 VERMGGKIWVTSSPGKGSTFAFTVQLKEA 815 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 48/140 (34%), Gaps = 6/140 (4%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-- 137 + + W D+ G S + K +G +++G D + + L+ Sbjct: 455 DNALEWIWETDSKGIYTYSSASVEKILGYTPQEVVGKFFYDFYSNEEKERLKELAGLITK 514 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRA 195 K++ + +G +V + + +P+ + F G+RG + +++ Sbjct: 515 KKEPFHRFENRNIHKKGN--FVWLLTSGIPMVDKQGNFLGYRGSNLDVSERKKIEERMEQ 572 Query: 196 LGKRLDKKFSHLHEIKKGHS 215 K ++ + S Sbjct: 573 EHKWAEEANKAKAKFLAHMS 592 >gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC 8106] Length = 1236 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 107/401 (26%), Positives = 181/401 (45%), Gaps = 17/401 (4%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + ++ + + + + SI E ++GI +G LS N A+ Sbjct: 526 DSIALLKMVAEMFSNTIERKRTEAVIRQTEAKYRSIFENAAEGICQTTPQGRYLSANPAL 585 Query: 482 SKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++ GY P + I P+ ++ E+ + + E + ++ Sbjct: 586 AQILGYATPADLIEGITDIKTQVYIKPNRRAEFIAEMQANSVVSGFESQVYRQ--DGNII 643 Query: 540 SLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + ++ T+ DI+E K L AK+ A S KS FLA +SHE Sbjct: 644 WISENARVVRDATGQIICYEGTVEDITERKAASVALKQAKEAAIAASRAKSTFLANMSHE 703 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AIIG+SE++ + + I +G +L ++ND+LDISKIE+G+M Sbjct: 704 LRTPLNAIIGYSEILTEEAEDSGYRHIVPD-LERICTAGRNLLTLINDILDISKIEAGRM 762 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 +L+ E S+ + IS Q + + ++ I + AD+ V+QI LN+LSNA Sbjct: 763 DLYLEDFSISALIESVISTAQPLVDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNA 822 Query: 716 IHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 FT +G QI + + E + +V DTG+GM+ +L+ +PF Q S Sbjct: 823 AKFTTAG-QIKLKVSPQPAEFPNTAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTT 881 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R GTGLGL +++ G I S G+ +I P Sbjct: 882 RRYGGTGLGLTISQRFCQMMGGTITIDSQLDCGSTFTVILP 922 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 41/354 (11%), Positives = 103/354 (29%), Gaps = 12/354 (3%) Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY---FGTLQNNSKESFEYLS 304 LK T +++ QE I+ + Q S L Sbjct: 3 PLLQRQLKRLALSENTPPSNAVAWQEFLDRISRSYTEADQERYLMERSLTLSSREMLQLY 62 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 + + + + +G L NP L +K + + Sbjct: 63 EQQRQETETRLATERDRLQAVISSLGAGLCILDPNGCLLSMNPEAERLLGWKQTELLGQP 122 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT----IQWNRENSLAMTFIPFE 419 + + + + L + + + LA++++ Sbjct: 123 LLQRIASHSQLSTVDFPCTFQDCSDCSSSESPYPQILKSSDDQFRCKNDAILAVSYVLNP 182 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + + D + + + E + L + AT GI ++R G + + N+ Sbjct: 183 ILDHE-TLIGAALVFLDITDRKRAQLEAERSLSLLQATFNATDAGIVALDRGGKVCNFNQ 241 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEK 537 +++ P E L + ++ ++ L + K+ + Sbjct: 242 KFVEMWQIPEETFKSPHEQSVLTFVLRKLKYPPRFINTVMQLSAAPKTPTYDIVEFKDGR 301 Query: 538 LLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + K+ + DI+E K+ + L H + + ++ + F+ Sbjct: 302 IFEVYSHPSKMGEKIVGRVWSFRDITERKRVEKSLKHRVEFEQLITNLSTYFIG 355 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 61/230 (26%), Gaps = 7/230 (3%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145 G + L + +G + + D+ ++I PN ++ + G Sbjct: 571 QTTPQGRYLSANPALAQILGYATPADLIEGITDIKTQVYIKPNRRAEFIAEMQANSVVSG 630 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++ ++ +G + I A + + + G V K+ + Sbjct: 631 FESQVYRQDGNI--IWISENARVVRDATGQIICYEG--TVEDITERKAASVALKQAKEAA 686 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K + + + + + D L + Sbjct: 687 IAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDSGYRHIVPDLERICTAGRNLLT 746 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + ++ Y + L + + + L RN +L Sbjct: 747 LINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPLVDRNSNTLEVE 796 >gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1788 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 112/558 (20%), Positives = 219/558 (39%), Gaps = 35/558 (6%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHP-----SLSAYFDEGENLTPETVDKCPIPFFVY 336 +++ + + T + + Sbjct: 624 MRRASPLVEGIEDLKGRTISVVQGVVDTYALAKRYPWVMWRNMATTEQALQALAQGEVTA 683 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIA 395 + + L ++D +++ L + + V + + Sbjct: 684 HLDTIPAVRVATERL----ALDSLQVVTPTDLQLQLSFGVRPDWPELVSIINKVMQAVPP 739 Query: 396 ASARLHTIQWNREN-------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 A R+ W R + ++++E Sbjct: 740 AEKRVIVQSWMRPRTQTAMDWIYLWKVVGTLLLLAAVVLGVVLVWNRRLSQEIEQRKRVE 799 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E+ +L +E T + I + EG + N G+ +++L + + +T Sbjct: 800 EELSKLYRAVEQTPVSVVITDLEGRVEYVNPTFCHNSGFAEDEVLGRTNGLIPSDHTSGA 859 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 L + ++ + L TK L+ R+ I + + Y DIS+ Sbjct: 860 EYQALWQQITAGGEWSG--EFLNRTKSGGLVWERVSISAVRSADGQITHYLGIKEDISQM 917 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+++ +L+HAK+ A+ + KS FLA +SHEIRTP+ AI+G + + P + Sbjct: 918 KEDQERLAHAKESADLANRAKSSFLANMSHEIRTPINAIVGMCHLAQRMTVEP----KLR 973 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 +Y +I + + +L I+ND+LD+SKIE+GK++ P LDE +S + L L A +K + Sbjct: 974 DYLGHIQVAADTLLGIINDILDVSKIEAGKLHFEDIPFKLDELISRVMRLQGLKAQDKNV 1033 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVI--L 739 + +P+ ++ D + QI N+++NA+ FT G ++++S + V Sbjct: 1034 ELVIDLEPQVPQTVVGDPLRISQILTNLVNNAVKFTEQG-EVVLSVKLQGVFDGRVTLYF 1092 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRD+G+GM + +L++ PF Q +S R GTGLGL + + +V G + S + Sbjct: 1093 EVRDSGIGMEDAQLQRLFTPFQQGDDSMTRRYGGTGLGLSICQNLVKMMGGHLQVESRLS 1152 Query: 800 KGTL--IEIIFPLYDTSH 815 +G+ + P++ Sbjct: 1153 EGSRFYFTVSLPIHQAPA 1170 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 40/139 (28%), Gaps = 7/139 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146 D G ++ ++ G +++G + H + + W G+ Sbjct: 819 TDLEGRVEYVNPTFCHNSGFAEDEVLGRT-NGLIPSDHTSGAEYQALWQQITAGGEWSGE 877 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G ++ + ++A + S + + + + G I + + + Sbjct: 878 FLNRTKSGGLVWERVSISA--VRSADGQITHYLG--IKEDISQMKEDQERLAHAKESADL 933 Query: 207 LHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 934 ANRAKSSFLANMSHEIRTP 952 >gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 953 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 125/653 (19%), Positives = 247/653 (37%), Gaps = 34/653 (5%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245 + A + + K + V+ + + + + + + Sbjct: 165 RVEERTAALRESEAKLEAMLNFAPAVIYVKDLQGRHIFVNRAFLKLFNCTLADIIGKVNH 224 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + EK+ + E + E+ I+ YT + L + +++ + Sbjct: 225 DFYLPEVADVFEKHDRIVIESCHFHQFEEDVKIHDKNYTFLSHKFILFDQNQQPYALCGI 284 Query: 306 RNHPSLSAY----FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 N + + T+ P F + S G PS + Sbjct: 285 SNDITQRQAFYNALQRSQEQLKATLQAIPDLVFRLNSQGEYLAIYPS--EYVGNLVDTKL 342 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 I + LL P + + + L + + + E + P Sbjct: 343 AIGYSIMELLPPPIAAKYSQVTQTALATKTLQTYEQDVVIDGVLRHEE----VRVAPCGD 398 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG--IIL 475 E + + ++ + I G+ +++ +G + Sbjct: 399 NEVVFVIRDITEQETALRERQKAADTIKKSEDRFGRIANNMP-GVLYQYVLHPDGSHNFM 457 Query: 476 STNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + ++FG + I R E + + + + E + + Sbjct: 458 YMSERCQEIFGLDADTITRDANQLFQLFEAEDFISLKASILLSATTLNTWSWEGKLVTPS 517 Query: 534 KEEKLLS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 E K + + +++ + + DISE K + +L ++ + K +FLA + Sbjct: 518 GENKWIQGISQPERQVNGDIVWDGVVVDISERKLMEIELQKTVAELDRATRLKDEFLANM 577 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL I+G SE +K G L N I++SG +L++++D+LDISKIE+ Sbjct: 578 SHELRTPLNGILGMSEALKEGILGAL-NSNQHHAIAMIEKSGKHLLELISDILDISKIEA 636 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALN 710 GK+ L+ V + E + +++LV A K+I I + + + I D R ++Q+ +N Sbjct: 637 GKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIPQALEKTLIKVDNRRLRQVLIN 696 Query: 711 ILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +LSNA+ FT G+I ++ ++ + + V D G+G+ +L K PF Q Sbjct: 697 LLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQ 756 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 I +S + GTGLGL L K +++ + G + S KG+ + P + TS+ Sbjct: 757 IDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYHKTSN 809 Score = 74.7 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 3/202 (1%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448 T T Q L+++ A + + ++ R+ +R + Sbjct: 115 GTFAVYFKTCRTPQNQDLEILSLSAHIASIAIERDRTTQALADLNQQLEVRVEERTAALR 174 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +L ++L I + + +G + NRA KLF + DI+ K F V Sbjct: 175 ESEAKLEAMLNFAPAVIYVKDLQGRHIFVNRAFLKLFNCTLADIIGKVNHDFYLPEVADV 234 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTMHDISEWKQE 567 + ++ E+ K LS I+ + +DI++ + Sbjct: 235 FEKHDRIVIESCHFHQFEEDVKIHDKNYTFLSHKFILFDQNQQPYALCGISNDITQRQAF 294 Query: 568 KNKLSHAKKIAEKESSHKSDFL 589 N L +++ + D + Sbjct: 295 YNALQRSQEQLKATLQAIPDLV 316 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 35/384 (9%), Positives = 109/384 (28%), Gaps = 34/384 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G ++ K +IG V+ ++ + D+ ++ + ++ Sbjct: 195 DLQGRHIFVNRAFLKLFNCTLADIIGK----VNHDFYL---PEVADVFEKHDRIVIESCH 247 Query: 150 WPIEGTNLYV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + ++ + ++ +N++ + GI + +R ++ Sbjct: 248 FHQFEEDVKIHDKNYTFLSHKFILFDQNQQP--YALCGISNDITQRQAFYNALQRSQEQL 305 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYPL 261 + + + + + + ++ K + Sbjct: 306 KATLQAIPDLVFRLNSQGEYLAIYPSEYVGNLVDTKLAIGYSIMELLPPPIAAKYSQVTQ 365 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE------SFEYLSHRNHPSLSAYF 315 +L E I+ ++ +N + + + R + Sbjct: 366 TALATKTLQTYEQDVVIDGVLRHEEVRVAPCGDNEVVFVIRDITEQETALRERQKAADTI 425 Query: 316 DEGENLTPETVDKCPIPFFVY-----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + E+ + P + Y N Y + + + A L L Sbjct: 426 KKSEDRFGRIANNMPGVLYQYVLHPDGSHNFMYMSERCQEIFGLDADTITRDANQLFQLF 485 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 +A A ++L + + +L + + EN + Q ++ Sbjct: 486 EAEDFISLKAS--ILLSATTLNTWSWEGKL--VTPSGENKWIQGIS--QPERQVNGDIVW 539 Query: 431 NGIEPEDVDTRINKRKMEIEVMQL 454 +G+ + + ++ + +++ V +L Sbjct: 540 DGVVVDISERKLMEIELQKTVAEL 563 >gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi SZ] Length = 581 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 104/560 (18%), Positives = 204/560 (36%), Gaps = 30/560 (5%) Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + LL ++ +LP Q H + K + + + + + Sbjct: 45 QAQLARLLAEQQRALPPQALAHKLGAAI---KARVTLIAADGRVVGDSDVRDDQVGSLEN 101 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLD 371 + + L SV + + Sbjct: 102 HQGRPEVQQALKTGSGWSIRYSDTLRTTMLYVALPLPAGDASVIRLALPLEYFDAAKRAL 161 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L + +A+ + + + A E + Sbjct: 162 HNLLGGAVTLLLFSSLLLSIFLSRITAKPLREIADAAARIGVGERGVRIAMGKGEEIDYL 221 Query: 432 GIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 ++ RI ++ K+ E +L +IL +G+ + + +G I+ N A K FG P Sbjct: 222 ARVLNEMAARIEEQMHKLTSEQQRLAAILRGMGEGVMVTDTKGNIILVNPAFRKQFGLPG 281 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++ +P + E + L++ + + + Sbjct: 282 -EVEGRPLVEVCRHPD---LLQAFEEQRESGDE--VSCEITIPITNLVLMAHWVPLTRDS 335 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + HDIS+ K+ + + DF+A VSHE+RTP+ I G+ E Sbjct: 336 GNRGTVAVFHDISDLKRVET--------------MRRDFVANVSHELRTPVAVIKGYGET 381 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + R + I + +++ND+L +SK+E+ L P+ L + Sbjct: 382 LLDGAL-EESPERSRRFVEIIVSHAERLTNLINDILTLSKLEARDAALTLHPLDLCGTIR 440 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +A L++ +A K I I + +P++LAD ++Q+ LN+L NAI +TP GG + ++ Sbjct: 441 KAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQLEQVLLNLLDNAIKYTPDGGDVTVAA 500 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V++ V DTG+G+ +L + + F ++ + GTGLGL + K +V + Sbjct: 501 RLEQE-RVVVAVSDTGIGIPARDLPRIFERFYRVDEGRSREQGGTGLGLAIVKHIVQLHG 559 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G+ + S KG+ + P Sbjct: 560 GEVQVASEAGKGSTFTVTLP 579 Score = 38.1 bits (87), Expect = 5.6, Method: Composition-based stats. Identities = 32/327 (9%), Positives = 73/327 (22%), Gaps = 21/327 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ K G ++ G L +V + + + + + T Sbjct: 260 TDTKGNIILVNPAFRKQFGLP-GEVEGRPLVEVCRHPDLLQ--AFEEQRESGDEVSCEIT 316 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + P+ + RG + H + + SH Sbjct: 317 IPITNLVLMAHWV-----PLTRDSGN----RGTVAVFHDISDLKRVETMRRDFVANVSHE 367 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + + P R + + +A + L + L E Sbjct: 368 LRTPVAVIKGYGETLLDGALEESPERSR---RFVEIIVSHAERLTNLINDILTLSKLEAR 424 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + P + A + E + +D Sbjct: 425 DAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQLEQVLLNLLD 484 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G +V D G+ + Sbjct: 485 N---AIKYTPDGGDVTVAARLEQERVVVAVSDTG--IGIPARDLPRIFERFYRVDEGRSR 539 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMT 414 T + + H +Q + + Sbjct: 540 EQGGTGLGLAIVKHIVQLHGGEVQVAS 566 >gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1191 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 116/565 (20%), Positives = 220/565 (38%), Gaps = 42/565 (7%) Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPI 331 + + Y L++ S + Y++ R + + E + P Sbjct: 230 RSKSGQLYWVDATIVPLKDESGKPNMYIAIRTDITARKRMEVNIKAAEARLRHITNTLPG 289 Query: 332 PFF----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS--DNNAIKPVM 385 F + N + ++ S + + Sbjct: 290 VVFQVHVSERGQRYTFVNDRVQEVRGISVQQLLDDPKSASRQVLEEDWPLVRDGIYLAAQ 349 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + TI+W + P + Q + GI + + Sbjct: 350 RREAWQGEYRIQLPNKTIRW-----IRTEVSPEPETGQDGATI-FTGIWQDVTLAKEA-- 401 Query: 446 KMEIEVMQLCSILEATSDGIA--IINREG--IILSTNRAVSKLFGYPVEDILRKP--FTV 499 +L + + + + G I + A + G E + F Sbjct: 402 -----DERLREVTRHIPVAVFQYFVTKGGLFKIAFMSHAAETMMGVRTEVMTTDSNAFLQ 456 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556 + + + L E + ++ + + ++ +R + ++ + + Sbjct: 457 CVHPQDRTSVAQSLVEASAAGAPWGMDFRMVN-AQTMEIFWVRGESQPQHKANGHIVWNG 515 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+++ + +L AK AE + KSDFLA +SHEIRTP+ +IG +E++ + Sbjct: 516 FLTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL- 574 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + EY N + S +L ++ND+LD SKIE+GKM++ P +L+ V++ + V Sbjct: 575 ---DAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVV 631 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSN 734 L A++K + + A ++PR ++ D ++Q+ +NIL NAI FT G + I SN Sbjct: 632 LRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASN 691 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + L V DTG+G+ +L F Q +S + GTGLGL + +V+ G Sbjct: 692 GKPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTI 751 Query: 793 YIFSTPAKGTLIEIIFPLY-DTSHP 816 ++ STP +G++ L DTS P Sbjct: 752 WVESTPGQGSVFHFTVALVKDTSAP 776 Score = 95.1 bits (235), Expect = 5e-17, Method: Composition-based stats. Identities = 38/418 (9%), Positives = 109/418 (26%), Gaps = 26/418 (6%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + + L + +++ + + ++ S + + D Sbjct: 24 VQQELGGLQEGVPLSPAALQAIKGLGPLLHQVEEAYLQNDRDLELKSRSLELSSVDLTAS 83 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + + L + + ++ + E + + Sbjct: 84 NTRLRDELESRTRAMDSLRATASALMAQVDPDHPPLIDDSLESLSELMGTLVRQKEDSQK 143 Query: 316 DEGENLTPET-----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 D LT +D+ I + G++ YAN F L+ Y + + + + Sbjct: 144 DLQFALTDLANQKFALDQHAIVSTTNAAGDIVYANDKFCQLSGYSRGELLGQ----NHRM 199 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + D + S + + ++ + Sbjct: 200 INSGVQDKVYFTNLWAVISSGKVWRGEICNRSKS---GQLYWVDATIVPLKDESGKPNMY 256 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--AIINREG-IILSTNRAVSKLFGY 487 I + + + ++ +L I + ++ G N V ++ G Sbjct: 257 IAIRTDITARKRMEVNIKAAEARLRHITNTLPGVVFQVHVSERGQRYTFVNDRVQEVRGI 316 Query: 488 PVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 V+ +L K + + + ++ + E K + + + Sbjct: 317 SVQQLLDDPKSASRQVLEEDWPLVRDGIYLAAQRREAWQGEYRIQLPNKTIRWIRTEVSP 376 Query: 546 KKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH----KSDF--LARVSH 594 + ++ D++ K+ +L + K +A +SH Sbjct: 377 EPETGQDGATIFTGIWQDVTLAKEADERLREVTRHIPVAVFQYFVTKGGLFKIAFMSH 434 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 35/377 (9%), Positives = 95/377 (25%), Gaps = 22/377 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147 +A G + +++ + G +++G ++ + ++ ++ W G+ Sbjct: 168 TNAAGDIVYANDKFCQLSGYSRGELLGQNHRMINSGVQDKVYFTNLWAVISSGKVWRGEI 227 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G +D +P+ + + + + I K + + H+ Sbjct: 228 CNRSKSGQLY--WVDATIVPLKDESGKPNMY--IAIRTDITARKRMEVNIKAAEARLRHI 283 Query: 208 HEIKKGHSS---VEKEKYDIFSQQSPPPHLRMKNKVSSLTEY------YAHKDDVLKTEK 258 G V + +R + L + +D L + Sbjct: 284 TNTLPGVVFQVHVSERGQRYTFVNDRVQEVRGISVQQLLDDPKSASRQVLEEDWPLVRDG 343 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + N + + + + + ++ + Sbjct: 344 IYLAAQRREAWQGEYRIQLPNKTIRWIRTEVSP-EPETGQDGATIFTGIWQDVTLAKEAD 402 Query: 319 ENLTPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E E P+ FV G A S T ++ + L Sbjct: 403 ER-LREVTRHIPVAVFQYFVTKGGLFKIAFMSHAAETMMGVRTEVMTTDSNAFLQCVHPQ 461 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + ++ + R+ Q + + + NG Sbjct: 462 DRTSVAQSLVEASAAGAPWGMDFRMVNAQTM--EIFWVRGESQPQHKANGHIV-WNGFLT 518 Query: 436 EDVDTRINKRKMEIEVM 452 + R +++ Sbjct: 519 DVTQARHISEELQKAKD 535 >gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C] Length = 769 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 125/506 (24%), Positives = 225/506 (44%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y+ + + ++ ++D + + +M + Sbjct: 281 VYWSRAMYEMLGYEPQNALLSISQITAIIDPKDANFFELAQELM-----GSEKKHIDINV 335 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M + P GI + + + +++ +E Sbjct: 336 PMRHAEGHYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFAEQTARADLRIRDAIENI 392 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E + ++ Y +I Sbjct: 393 SESFVLWDSEGRLVMSNSKFCEYASIPKQMLQSGIERATVEAMSRPAISEYPLKIDESG- 451 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 452 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 504 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGF 564 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE++ FGPLG+ RY EY + I SG +L ++ND+LD+SKIE+G+ L + ++L+ Sbjct: 565 SEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEP 624 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SE I + A K+I + T+ + D R++KQI LN++SNA+ FTPSGG I Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTPSGGSID 683 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I N +I ++DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLE 742 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S AKGT++ II P+ Sbjct: 743 LHKGKLEITSKEAKGTIVTIIMPIQQ 768 >gi|284167215|ref|YP_003405493.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284016870|gb|ADB62820.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 817 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 104/764 (13%), Positives = 230/764 (30%), Gaps = 44/764 (5%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T+ + F T +D G + +E + G +++G + Sbjct: 77 TDEREDGTEFEAFVSAVTDYAIITLDPDGTVASWNEGANRITGYETDEIVGEHVSAFYTD 136 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 I +L + + W + ++ + + GF + Sbjct: 137 AAIADGAPERNLDIAREDGRVEDEGWRVRADGSRFWANVTITAVRDEDGTLQGFTT--VT 194 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLR 235 +R + E + D+ P Sbjct: 195 RDMTERRAYEQQLQRERDFTEQILETVPVGIGLLTPSGDVVRANQRLADQFGIEPAASEP 254 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 L + + + + Q + + L++ Sbjct: 255 SSIDAWDLYDVDGEPIPADERPWRRVFETGHPIDDYQCQVDVPEVGRRWLSITAVPLEHA 314 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYSHGN-LFYANPSFLL 350 + + + + + T + + P+ V + AN Sbjct: 315 EDDELRIVLAVDDITEQKEQERDLRREYEQTEKLLRTAPVGIAVQNADRETILANRRAQE 374 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + + R +T + Sbjct: 375 TFGLTESEFTDNPVDTGEWKIYDADGELLGPEETTSGRVLQTGEPIFDEELIFEPPDGER 434 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS----ILEATSDGIA 466 L E + + + +R++E +L + IL+ SD Sbjct: 435 LHFRVNTAPVFGPDGEIERIITGSKDITELKERERQLEQRKSELETELSEILDRISDAFY 494 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++ E N ++L G P IL + + T L T E Sbjct: 495 ALDDEFRFTHLNDHAAELVGRPKAQILDQKVWDVVPDGTEDRHREAFERALETQEPVTFE 554 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + ++ + S+ D+SE K+ ++ E+ + Sbjct: 555 ---IYVEDDDAWFEFNAYPS----ETGLSVYFRDVSERKE-------YQRKLEESNERLE 600 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 F SH+++ PL + + + + R+ + E+ + + +++ LL+ Sbjct: 601 QFAYAASHDLQEPLRMVTSYLQ-LLESRYADELDGDAAEFIEFAVDGAERMRKMIDGLLE 659 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 S++E+ L EP+ L E V +AI +Q+ E I ++P++ D ++Q Sbjct: 660 YSRVETQGEPL--EPIDLGEIVDDAIGNLQVKIEETGADITLD---SLPQVRGDESQLQQ 714 Query: 707 IALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 + N+LSNA+ ++ ++ IS + VRD G+G+ + ++ + F ++ Sbjct: 715 VFQNLLSNALEYSGDEPPRVRISADRR-GSRWKISVRDEGIGIEPEDQDQIFEVFQRLHG 773 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTG+GL L + +V+ + G+ + S P +GT P Sbjct: 774 --REEHPGTGIGLSLCQRIVERHDGEISVDSEPGEGTTFSFTLP 815 >gi|218441345|ref|YP_002379674.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218174073|gb|ACK72806.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1267 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 113/788 (14%), Positives = 258/788 (32%), Gaps = 77/788 (9%) Query: 71 ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDP 129 E + +D+H + + + G ++ G L + + D L+ Sbjct: 507 EEELRLIADATPALIAY-VDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSLYEKV 565 Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 I +LK + Y + P + I +P + + GF +++ Sbjct: 566 RPRIEKVLKGEQVIYEEEITLPNSESRY---IRANYMPRFDSQGKVEGF--VALINDFSD 620 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEY 246 + +++F + + E ++ ++ Sbjct: 621 RKRMEDNLRESEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTGRTLEQELGEGWTD 680 Query: 247 YAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 H +D+ + L + Q + N + + + Y+ Sbjct: 681 NIHPEDLSYVLEDYLQAFNTRQPYEMQYRVKSANGDYRWILERGSPRFTPEGKFSGYIGS 740 Query: 306 RNHPSLSAYF-------DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357 + ++ + +D + + + Y N L + Sbjct: 741 CTDVTERQQAIQALQQSEQALQQHAQMLDLANDSIIIRDLNEAIAYWNHGAERLYGWTKT 800 Query: 358 DDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + L T+ PK + + T + + ++ Sbjct: 801 EAEGHQIHNLLKTIFPQPKTEIYSILT--RQGYWQGEL--------TQTKQDGSQIIVSS 850 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + N + + I + + + + + + + +I E + G++++N +G L Sbjct: 851 RWTLQYNSQGQAIAILEISDDITERKQVEAALRVSEERFRAIFEQAAVGMSLLNLDGRWL 910 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+ + ++ GY E++L+K F +Y++++L+ +T ++ Sbjct: 911 RVNQKLCEITGYTQEELLQKTFQDITYPEDLETDLNYVSKLLA-GEIETYSLEKRYIRQD 969 Query: 536 EKLLSLRIIIKKLPFS------------SCYSLTMHDISEWKQEKNKLSHAK-------- 575 + L+ + I + + + + DISE K+ + + A+ Sbjct: 970 KSLIWVEITVSLMWDQTQSKSSSKVPKPQYFITVIEDISEAKRGEIERQQAQIALQERAK 1029 Query: 576 -------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +K + F VSH+++ PL AI SE I+ G L Sbjct: 1030 ELTSLNTVLASTTTMLQKRNQELDQFAYVVSHDLKAPLRAIANLSEWIEEDLEGQLPPEN 1089 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + + + + +++N +L+ S++ G+ E S+DE ++E I + Sbjct: 1090 Q-EQLQLLRQRVHRMENLINGVLEYSRV--GRKETKIETFSVDELLTEVIDSLSPPP--- 1143 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAI-HFTPSGGQIIISTTHTSNEEVILRV 741 +P + + QI N++SN I H+ S G + I ++ V Sbjct: 1144 --TFTVEIGEGMPTLTTSKVFLAQIFSNLISNGINHYPGSDGHLWIRVK-ELDKFYEFAV 1200 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G G+ ++ F + S E TG+GL + K +++ G + S +G Sbjct: 1201 ADNGKGIAPEYHQRIFGIFQTLEKS--ENLESTGIGLAIVKKIIEYQGGNIKVESELGQG 1258 Query: 802 TLIEIIFP 809 T +P Sbjct: 1259 TTFRFTWP 1266 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 59/525 (11%), Positives = 137/525 (26%), Gaps = 48/525 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + +D I+ + G + + + +K Q + Sbjct: 148 FALDYQWNFTYINNPGEIIFKQSRQTLEGKNIWQILPEIEGTVYEQFHRAIKEQIPICLE 207 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFS 205 ++ ++ A P+ G + + K + +F Sbjct: 208 QNIFTESNQFY----EIRAYPVSE---------GLAVYLLDVTERRLAALQLKESELRFR 254 Query: 206 HLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 L E + Y+ +S + + L + + + Sbjct: 255 QLAENISKVFWISDLEKSEILYVSPAYERIWGKSCESLYQYPSSW--LEAVHPEDRNRVN 312 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSL 311 + + E E + + + + + Sbjct: 313 LAISQMK-NGEQDFKEDYRIIRPDGQIRWIGARTFPIYDENGKRYRIAGFAEDITERKRA 371 Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E E V+ F G L YAN +L + Y D + + Sbjct: 372 EQALQESERRFRRLVESNLFGVAFANIAGRLHYANDYYLNMVGYSREDLENGLIQWNQMT 431 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 L + M + ++ + + F Sbjct: 432 PPEWLDLDFKALEEMKVK--GVTTPFEKEY--LRKDGSRVPILIGAAFLDEPYEI-AQEM 486 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G + + ++ ++ +L I +AT IA ++ NR + FG P++ Sbjct: 487 IGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPID 546 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 I K FL + + + ++L + E+ E + + + + Sbjct: 547 QISGKTLQEFLGDSLYEKVRPRIEKVLK-GEQVIYEEEITLPNSESRYIRANYMPRFDSQ 605 Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + ++D S+ K+ ++ L +ES + +A S Sbjct: 606 GKVEGFVALINDFSDRKRMEDNL--------RESEERFRMMANSS 642 Score = 117 bits (293), Expect = 8e-24, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 16/302 (5%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDD 359 L + E E + + F++ + Y +P++ + KS + Sbjct: 233 LLDVTERRLAALQLKESELRFRQLAENISKVFWISDLEKSEILYVSPAYERIWG-KSCES 291 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + ++ + + + I+ + + F Sbjct: 292 LYQYPSS---WLEAVHPEDRNRVNLAISQMKNGEQDFKEDYRIIRPDG-QIRWIGARTFP 347 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + G + + + ++ ++ + ++E+ G+A N G + N Sbjct: 348 IYDENGKRYRIAGFAEDITERKRAEQALQESERRFRRLVESNLFGVAFANIAGRLHYAND 407 Query: 480 AVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 + GY ED+ + L E+ + EK L K+ Sbjct: 408 YYLNMVGYSREDLENGLIQWNQMTPPEWLDLDFKALEEMKVKGVTTPFEKEYL--RKDGS 465 Query: 538 LLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV- 592 + + I + D++ K+ + L ++ + +A V Sbjct: 466 RVPILIGAAFLDEPYEIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVD 525 Query: 593 SH 594 SH Sbjct: 526 SH 527 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 60/187 (32%), Gaps = 9/187 (4%) Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCS 456 I L + + + E + Q + E + +++ +E Q+ Sbjct: 79 ETWDISTADAFRLMIFILECILISILCEALHQAKRKVEINLHSLQQKESMLEKANTQVSR 138 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 ILE+ +G ++ + N +F + + K L + Sbjct: 139 ILESIGEGFFALDYQWNFTYINNPGEIIFKQSRQTLEGKNIWQIL-PEIEGTVYEQFHRA 197 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + LE+ + + I+ P S ++ + D++E + +L ++ Sbjct: 198 IKEQIPICLEQNIFTESNQ------FYEIRAYPVSEGLAVYLLDVTERRLAALQLKESEL 251 Query: 577 IAEKESS 583 + + Sbjct: 252 RFRQLAE 258 >gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 611 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 167/396 (42%), Gaps = 26/396 (6%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +P ++ + + + + E E +L SIL SDG+ + G ++ Sbjct: 231 MPVLGNDEIGQLSKAFNYMTSRLRDALAQN--EEEKEKLASILTNMSDGVIATDETGRVI 288 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 NR S++ G D+ + + ++L + G + Sbjct: 289 LMNRRASEMLGTSDTDLDQADIMSLMNLPDEE------WDVLEQGTMHSTILENTGPDGD 342 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 L+ + + D++E ++ + + + +F+A VS Sbjct: 343 VFLIRVTFTPIHRREIGIIGTIAVLQDVTEQEKLE--------------ASRREFVANVS 388 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPLT I ++E +++ + + I ++ +V DLL +S+ +S Sbjct: 389 HELRTPLTTIKSYTEALEDGAM--EDPELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSH 446 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 + L +P ++ E + + + EK I AN++ D + Q+ N++S Sbjct: 447 EAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLIS 506 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ +TP GG I + T + ++ + V+DTG+G+ +L++ + F ++ ++ G Sbjct: 507 NAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGG 566 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGL +A+ +V A+ G + S KGT + P Sbjct: 567 TGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTLP 602 Score = 44.2 bits (103), Expect = 0.078, Method: Composition-based stats. Identities = 26/254 (10%), Positives = 58/254 (22%), Gaps = 9/254 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ + +G + D+ ++++ + D+L++ Sbjct: 281 TDETGRVILMNRRASEMLGTSDTDL---DQADIMSLMNL--PDEEWDVLEQGTMHSTILE 335 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G + + PI+ R G ++ A + SH Sbjct: 336 NTGPDGDVFLIRVTF--TPIHRREIGIIGT--IAVLQDVTEQEKLEASRREFVANVSHEL 391 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E + + + P R + + S TE L E Sbjct: 392 RTPLTTIKSYTEALEDGAMEDPELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSHEAELR 451 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + +NL + Sbjct: 452 KQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLISNAMKY 511 Query: 329 CPIPFFVYSHGNLF 342 P + L Sbjct: 512 TPEGGAIALEARLT 525 >gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 836 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 114/634 (17%), Positives = 233/634 (36%), Gaps = 41/634 (6%) Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 I + + + + L+ + + + + + Sbjct: 73 ISRYGREIIGQPLRYVQGRPRAGGLQT----WRMLHTDGVTPVRAEDQPLARSIARGELV 128 Query: 270 PEQE-DFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPE 324 E+E + + G ++ S +++ L E E Sbjct: 129 AEEEYVILRPDGGKVPIACNSGPIRAESGSITGGVLSWINVAKSQKLLEDLRESEARFKA 188 Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 T D+ + S AN + + Y D++ +L P+ D + Sbjct: 189 TFDQAAVGMAQTSPDNRFLRANAKYCQMLGYT-FDELARISLDDIVL--PEDRDKERLLV 245 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L D + I+ R + + E + + + Sbjct: 246 GQLLAGDISSISLEWRCLR---KDGSIIWTEVTSSLVRKYSGEPDYIIHAKLDISVRKKA 302 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLE 502 + ++ V + ++ E + D I +NR L N A G+P + + K Sbjct: 303 EEELFKSVQEYKALAENSPDLIIRVNRGLRYLYVNPAFEAFSGHPASECMGKSIREACYL 362 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHD 560 + + + S ++L+ +E + +++ + + D Sbjct: 363 PEITEKIEEVVARVFSTRQAESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRD 422 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K+ + + A + AE+ + KS+FLA +SHEIRTP+ ++G + + + Sbjct: 423 ITELKRLEAESKQAMEAAEQANRAKSEFLANMSHEIRTPMNGVMG----MLDLALMNNPD 478 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y +S +L+IVND+LD+++IE+G++ + + + + L A Sbjct: 479 PSVRSYLQMGKKSAGHLLNIVNDILDLARIEAGRIEIGTREFDVRMSFEALFRTMALEAE 538 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + A++IP R++ D + Q+ N++ NAI FT G +I + T ++ + Sbjct: 539 KKGLRFSAVIASDIPSRLIGDEGRLIQVFTNLIGNAIKFTTKG-EITVKVTVARPTDIGM 597 Query: 740 --------------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + DTG+G+ +LEK + F Q+ ++ GTGLGLP+++ +V Sbjct: 598 QEACPHTDAICMFASISDTGIGIPADQLEKIFESFAQVRGDLHLQHFGTGLGLPISRQLV 657 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDT--SHPH 817 + GK + S KG+ L + + P Sbjct: 658 ELMDGKIWSESELGKGSTFYFTVTLQEAPNAQPE 691 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 16/253 (6%), Positives = 54/253 (21%), Gaps = 13/253 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYG 145 + + + +G ++ + L D+ D + L + + Sbjct: 199 QTSPDNRFLRANAKYCQMLGYTFDELARISLDDIVLPEDRDKERLLVGQLLAGDISSISL 258 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G+ ++ + + + YS ++ V + +++ Sbjct: 259 EWRCLRKDGSIIWTEVTSSLVRKYSGEPDYIIHAKL----DISVRKKAEEELFKSVQEYK 314 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L E P K Y + ++ Sbjct: 315 ALAENSPDLIIRVNRGLRYLYVNPAFEAFSGHPASECMGKSIREACYLPEITEKIEEVVA 374 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + ++ + + + L + + Sbjct: 375 RVFSTRQ-AESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRDITELKRLEAES 433 Query: 320 NLTPETVDKCPIP 332 E ++ Sbjct: 434 KQAMEAAEQANRA 446 >gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 1186 Score = 357 bits (916), Expect = 5e-96, Method: Composition-based stats. Identities = 128/763 (16%), Positives = 247/763 (32%), Gaps = 78/763 (10%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W + S K +G ++ I + + I ++ + Sbjct: 314 WEWNLENNKAYFSPNFYKMLGYKDDQLQIDIDSAFKIIHPEDKKETLKIIEKAVEELEPF 373 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + G + +++ + G I K+ + Sbjct: 374 AEELRVKCKNGG--WKWVEVRGKSYQLDPRGKAKRILGINI--DIDQKKKQEEALKKSRE 429 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 KFS L E +I + + + ++K Sbjct: 430 KFSRLSEEAPIGILSADRNGNIDYANSKMIEILGSPGLIETKKINLLKFPLLIERGFSQK 489 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYF 315 +E + ++ T + + + + + Sbjct: 490 IEKCMTENEPATYELNYSTKWGKNIWLRVHLTPRHEDDKVTGVQLIVDEITEKKEIQDRL 549 Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD--- 371 E + F+ G + + N + Y S +++ + Sbjct: 550 KLSERNFRTFFESMDDMIFISDYRGEISHTNHLTIEKLGY-SKEELAAMSFADIYIQKEG 608 Query: 372 ---APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L+D A K + L D I + R+ +WN + + + Sbjct: 609 KEIQQLLADMAAGKIMSLESKDGRLIPSETRIWFGKWNGKEVIFAIAKDVSRQ------- 661 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFG 486 + + + + + +N + + N + G Sbjct: 662 -------------------QEALQKFNKLFNNNP-ALMTVNTLVDFSFIEVNSSFLSKMG 701 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 Y E+I+ + + + +I+ +E L E L I Sbjct: 702 YSKEEIIGRNCRELELFADKAKRRKIIKKIIKEGSVNNIELKLLNKRDEVLELLFSGEII 761 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLARV 592 + M DI+ K+ + +L + ++ + KS FLA + Sbjct: 762 ESQGQQFILTVMTDITVQKRVEEELVKTNQKLQESMDKANKMAVKAEKANELKSQFLANM 821 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL I+G++E++ L Y Y I +G+ +LD VND+LD+SKIE+ Sbjct: 822 SHEIRTPLNIIMGYTELLAKD----LEEDNYKRYIKSIRSAGDSLLDQVNDILDMSKIEA 877 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G + +++E + L + ++ K + + N P + D +QI +N+L Sbjct: 878 GIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMDNLPPLVKMDEFRFRQIMINLL 937 Query: 713 SNAIHFTPSGGQIIISTTHTS-------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 NA+ FT SG I I N ++ + V+DTG+G+ + E+ K F Q Sbjct: 938 DNAVKFTKSG-HIFIGVYCRPVSGKGNNNIKLRIIVQDTGIGIKAEKQEEIFKAFSQENA 996 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + + +VD G+ + ST KG++ +I F Sbjct: 997 ESTREFGGTGLGLSITRRLVDMMDGQISLQSTAGKGSVFKIEF 1039 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 9/158 (5%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 +++R NK+ + +L +EA N E + K+ GY + + Sbjct: 282 LTLLIESRENKKLLSQANQRLKLAMEAAEHTFWEWNLENNKAYFSPNFYKMLGYKDDQLQ 341 Query: 494 --RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-----IK 546 + + + + + + K + + + Sbjct: 342 IDIDSAFKIIHPEDKKETLKIIEKAVE--ELEPFAEELRVKCKNGGWKWVEVRGKSYQLD 399 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DI + K+++ L +++ + S Sbjct: 400 PRGKAKRILGINIDIDQKKKQEEALKKSREKFSRLSEE 437 >gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 589 Score = 357 bits (915), Expect = 6e-96, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 176/366 (48%), Gaps = 23/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E++ +L +++E+ G+ +I+ G + NRA + F + L + + + Sbjct: 237 KAQEMQQDRLRTLIESMGSGLILIDGRGYVNLINRAYKETFDADPGEYLYRLYYEAI--- 293 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 + + EI ++ ++I L T E + + L HDI+ Sbjct: 294 EQKEVVTMIEEIFMTEV-SVRKQILLPLTIERRHFEVYGAPIIGVNDEWKGIVLVFHDIT 352 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + + DF+A VSHE++TP+T+I GFSE + + Sbjct: 353 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAMNDKDTLE 398 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + + I + + + ++ DLLD+SKIE L+ + + ++E + E +++ A EK Sbjct: 399 Y--FLSIILKESDRLQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREK 456 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + S + AD +KQ+ +N+++NAI +TP+GG++ + ++EV++ V Sbjct: 457 EIDLVLSKPKKELYLFADASRIKQVFINLINNAIAYTPAGGEVKVKVE-EVDKEVVIVVS 515 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GM E+ + + F ++ ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 516 DTGIGMEQDEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTSELNKGT 575 Query: 803 LIEIIF 808 + Sbjct: 576 AFTVKL 581 >gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium vannielii ATCC 17100] Length = 875 Score = 357 bits (915), Expect = 6e-96, Method: Composition-based stats. Identities = 128/651 (19%), Positives = 252/651 (38%), Gaps = 39/651 (5%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G V RA + + + K+ +++ + + + Q+P K ++ Sbjct: 217 GAVSGADTVLRIRAFSPVNKELVRLIGDNKRLKQAIQDREGILDALQTPVWLRDAKGALT 276 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN------- 294 + Y D E+ E ++ D H ++ ++ + T+ N Sbjct: 277 WVNTAYVTAIDAKSREEAIDKQIELFETRQRTDLHRMSQSRKPGRIKLQTIVNGCVQTYE 336 Query: 295 ------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPS 347 L + + T+DK V+ LFY N + Sbjct: 337 AITAPIERGSGGAALDVSMLKTQRDELERQIAANARTLDKVSTGVAVFGVDRSLFYCNDA 396 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F + + + + + S D + +P D IA Sbjct: 397 FAKIWELE-IAWLAAKPAASEFFDQLRQRRLLPEQPDYRKWRDGKIIAFD--------RN 447 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSD 463 +P + ++ +G D K +E + L L+ ++ Sbjct: 448 RTLDEFWHLPDGRTVHVVKDCRDDGGLTFLFDDVTEKLALERQFHTLIEGQRETLDHLNE 507 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDL 521 GIA+ +G + N + ++ P + + +P + + + + + + Sbjct: 508 GIAVFGADGRLDLYNPSYQSIWALPEDMLGDQPHFEDIRKASDMLAPDPDFWHTLRESIT 567 Query: 522 RQTLEKITLGST---KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 + T T + L+ + +T D+++ K+ + L + Sbjct: 568 GMPEARDTFSGTVAKSDGAHLAYVVTPLP---DGGTLVTFADVTDRKRFEEVLLERNEAL 624 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E K+ FL+ VS+E+RTPLT IIGF++++ FG L N + EY ++I S ++L Sbjct: 625 EASDRLKTAFLSHVSYELRTPLTTIIGFTDMLAEPAFGALNN-KQREYLDHIKTSSEVLL 683 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +I+ND++D++ +++G ++L PV ++ + A V+ + + + A+ ++ Sbjct: 684 NIINDIIDLAALDAGALDLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIASGAGTVM 743 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD + Q+ N+LSNAI F+P G I ++ N V + V+DTG+G+ E Sbjct: 744 ADANRLIQVLYNLLSNAIGFSPEDGTITLACRREKNG-VAISVQDTGLGIPEEEQATVFD 802 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F S+ R G GLGL L K++V+ + G+ + STP GT + + P Sbjct: 803 RFE--SRSKGSRHRGAGLGLTLVKSIVELHKGRIDLRSTPGAGTTVTVFLP 851 Score = 37.3 bits (85), Expect = 9.6, Method: Composition-based stats. Identities = 32/285 (11%), Positives = 85/285 (29%), Gaps = 17/285 (5%) Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 +F + + + G T++ + + L + Sbjct: 102 AFVFREQSRYRAKQLLRQNGRLDALFTIEGNFRALAALEPQVFVIWSDNHARLALHTMQG 161 Query: 359 DIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 I + L+ L + D+ ++ L R + T+ E + Sbjct: 162 TIGVPSKLAQLLRFGSWLHPDDASLTAENLARLQSRGEGFVSNASTL----EGHVIEIAG 217 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 A+ + + E V + ++++ + IL+A + + + +G + Sbjct: 218 AVSGADTVLRIRAFSPVNKELVRLIGDNKRLKQAIQDREGILDALQTPVWLRDAKGALTW 277 Query: 477 TNRAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A + + E+ + K +F + L + ++ T+ Sbjct: 278 VNTAYVTAIDAKSREEAIDKQIELF-----ETRQRTDLHRMSQSRKPGRIKLQTIV---N 329 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + I + S + D+S K ++++L + Sbjct: 330 GCVQTYEAITAPIERGSGGAAL--DVSMLKTQRDELERQIAANAR 372 >gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1478 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 132/758 (17%), Positives = 266/758 (35%), Gaps = 63/758 (8%) Query: 93 GYLKEISEELPKTIGNYA--FKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT----WY 144 G + +++L + +GN +++ L +V L++ + Sbjct: 594 GRIILQNDQLRQILGNRPLSTELLENYHHLYEVYHPNGHPYKIEELPLMRSRQQGEVVKS 653 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKK 203 + L +GT + +D + PI + E ++ K R ++ Sbjct: 654 EEMLLVWTDGTQKTLLVDSS--PIVNSQGEIE--VAVATIYDITDYKQVVTDLKNRQEQL 709 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + G + + ++ + H +D L+ ++ Sbjct: 710 RLAVEGANLGMWNYDLLSGELIWSNRCKKMFGIAANTQISYEVFINALHPEDRLRVDQAV 769 Query: 261 LLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + E + + + + NN + + E Sbjct: 770 QHSISQRQNYDIEMRTQWPDGSLHWVRSIGHAYYNNEGVAHRMAGVVLDITGQKQAQEAL 829 Query: 320 NLTPETVDKCP----IPFFVYSH-----GNLF-----YANPSFLLLTKYKSVDDIEIAGG 365 + E F V G + Y NP+ + + + D I Sbjct: 830 RKSEERFRVAQELSLDGFTVLKSIRNQSGEIIDFEWTYVNPTAAKILRSQINDLIGKR-- 887 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L DN + + A S L + E + + + Sbjct: 888 -----LLEILPDNQSNSELFKRYVQVVETANSHDLELYYDSDEIVGWFRNMAVKLEDG-- 940 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + + + +L L+ G ++ + L T+ F Sbjct: 941 ----VAVSFSDITERKQAEETLRENEQRLNIALKTAKLGSWHLDLSTMELFTSAQYKANF 996 Query: 486 GY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G D+ + ++ + ++ E + + + Sbjct: 997 GLATDADLSYTTLFRLIHPEDRGYVSQMVQHAINT--HTDYEAEYRSIWPDGSIHWINSQ 1054 Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVS 593 L ++ DI+ KQ + + A++ AE+ + K +FLA +S Sbjct: 1055 GCVLYSNTGIPLRIVGVNLDITGRKQAQEEQKRLLEREKLAREEAERVNRIKDEFLAVLS 1114 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+R+PL I+G+++++ R G + I+R+ L ++ DLLD+S+I G Sbjct: 1115 HELRSPLNPILGWAQLL---RSGSFDKANQNKALEIIERNAKLQAQLIEDLLDVSRILRG 1171 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K++L+ ++L + AI V+L A K I I+T+ A ++ +I D ++QI N+LS Sbjct: 1172 KLSLNVTQLNLFFPIQGAIETVRLSAQAKSIEIKTNLATDVVQISGDAGRIQQIVWNLLS 1231 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI FTP GGQI I N + + V+D+G G+ L + F Q ++ + G Sbjct: 1232 NAIKFTPEGGQIEIGLEQV-NHQAQITVKDSGKGIDPQFLPHVFEHFRQADSTTTRKFGG 1290 Query: 774 TGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 GLGL + + +V+ + G +S +G+ + FPL Sbjct: 1291 LGLGLAIVRHLVEMHGGTVSAYSAGENQGSTFIVQFPL 1328 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 28/259 (10%), Positives = 77/259 (29%), Gaps = 14/259 (5%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 +F N L + S + + + R+ + + Sbjct: 142 IFQQNQDLKYLWIHTSEGQVSPEEIIGKSDYDLFSQPEAQQLTAIKKRAIHSRQPLREEV 201 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + P ++ + + + + + ++++ Q ILE+ Sbjct: 202 CLTFGANPHYYELFIQPIASFDEQICGITCVAV--DITERKHFEQQLHSATQQSSQILES 259 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 +D +++ NR ++ + ED+L + + SV + + + Sbjct: 260 LTDAFFALDQTWQFTYVNRHFEEISEHTREDLLGECIWDVFPEMRQSVFYEEFSLVFEQN 319 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------A 574 L + + E+ + R + + DI+ K+ + + + Sbjct: 320 LP--ISIEAINPINPEQWIEARAYPS----AEGLCVYWQDITLRKETETERNQLLEREKT 373 Query: 575 KKIAEKESSHKSDFLARVS 593 + A + + FL S Sbjct: 374 ARAAAELMQQRLAFLDTAS 392 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 52/558 (9%), Positives = 125/558 (22%), Gaps = 88/558 (15%) Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167 ++IG D+ I + + + L + Y +L P Sbjct: 162 SPEEIIGKSDYDLFSQPEAQQLTAIKKRAIHSRQPLREEVCLTFGANPHYY---ELFIQP 218 Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 I S + + G + ++ S + E + + Sbjct: 219 IASFDEQICGITCVAV--DITERKHFEQQLHSATQQSSQILESLTDAFFALDQTWQFTYV 276 Query: 228 QSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + + + + + E +LP + + Sbjct: 277 NRHFEEISEHTREDLLGECIWDVFPEMRQSVFYEEFSLVFEQNLPISIEAINPINPEQWI 336 Query: 286 KQYF--------------GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + E + L +A + +T Sbjct: 337 EARAYPSAEGLCVYWQDITLRKETETERNQLLEREKTARAAAELMQQRLAFLDTASTILA 396 Query: 332 PFFVYSHGNLFYAN---PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-- 386 Y N P L + + L L + + L Sbjct: 397 GSLDYPTTLQTVVNLIVPDLADLCGLDILQEDRSVNPLIALKAKDQQEEELVRHFTRLYP 456 Query: 387 ----------YRSDRTCIAA------SARLHTIQWNRENSLAMT-----FIPFEKANQFP 425 R +T + I + ++ + Sbjct: 457 LDLNDNHHPITRVFQTGLPETLYQITDEDYQAIAKDPQHLHYLRQLGMKSSICVPLKAHE 516 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQ------------------------------LC 455 E + + N + + + L Sbjct: 517 EVFGVMTLALTKTERSYNDDDLRLALELGRRVGLAIENSRLHHQLQQATRQQQDSLTLLE 576 Query: 456 SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDI----LRKPFTVFLEQNTPSVMN 510 ++++ G+AI+ ++ G I+ N + ++ G N Sbjct: 577 AVIQQMPAGLAIVESKTGRIILQNDQLRQILGNRPLSTELLENYHHLYEVYHPNGHPYKI 636 Query: 511 HYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 L + S + + + L + +L + + S T++DI+++K Sbjct: 637 EELPLMRSRQQGEVVKSEEMLLVWTDGTQKTLLVDSSPIVNSQGEIEVAVATIYDITDYK 696 Query: 566 QEKNKLSHAKKIAEKESS 583 Q L + ++ Sbjct: 697 QVVTDLKNRQEQLRLAVE 714 >gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 803 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 192/501 (38%), Gaps = 19/501 (3%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D P ++ G L + N + T + A L P Sbjct: 24 PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 80 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + A + + + ++ + N + G Sbjct: 81 LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 136 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +TR+ + + + ++++A++ I +G ++ + + G E Sbjct: 137 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 196 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + + + + E + E +E + + + Sbjct: 197 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEGGSI 254 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+ K+ + + HA+ AE + KS FLA +SHE+RTPL+A+IG+SE + Sbjct: 255 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 313 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + LG + I+ S +L ++ND+LDISKIE+G++ L E + + + Sbjct: 314 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 373 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + Q +KR R F ++ + D ++Q +N++ NA F+ G +II+ Sbjct: 374 TAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIILGVRR 432 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V DTG+G+T ++ + + F Q S + GTGLGL + +A V+ Sbjct: 433 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 492 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + ST +G I P Sbjct: 493 GGTIGVESTFGEGATFTIRLP 513 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 T Q+ + + F + W +A G L + G +M Sbjct: 13 TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 68 Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + H++ + +W L +G Y A P+ + Sbjct: 69 DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 126 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 R +G + +++F L + + ++ Q Sbjct: 127 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 184 Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + + D E + + + + + Sbjct: 185 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 244 Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313 + E++ + Sbjct: 245 VPVLAEGGSIREWVGLNIDITARK 268 >gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O] Length = 1320 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 105/506 (20%), Positives = 201/506 (39%), Gaps = 30/506 (5%) Query: 325 TVDKCPI---PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + P+ +Y L + T S + + + ++L + K ++ Sbjct: 325 LLHQFPVQQVSIAIYRDDKLIRIAGAGYDDT--ISREISDQSSTQLSVLLSDKPYSMKSL 382 Query: 382 KPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI------- 433 + + + + N++ + + + Sbjct: 383 QGKYTTHVNGGVLELNEIYYFPLCVNKQPVALLELGTVDTLTPLQYQWLSQMLDDLSVSI 442 Query: 434 --EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 R ++K+ + IL AT + + ++ +G L+ N S+L G + + Sbjct: 443 QLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHE 502 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 I+ + Q S + + LS + + + + + + S Sbjct: 503 IVGRTPIEVFSQQEASHHFTQVHQELSQE-QCSKNYELSLFDSQGGCRDMLVCEASFNNS 561 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D++E KQ +++L AK A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 562 QGRVSGIVGILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 621 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +P +Y I+ S +L I+ND+LD SKIE+GK+++ SLDE Sbjct: 622 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 677 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726 +++ A EK I +P ++ D + Q+ +N+ NA+ FT G +I+ Sbjct: 678 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKG-EIL 736 Query: 727 IST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +S + + + V+DTG+G+ ++ F Q S GTGLGL ++K Sbjct: 737 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 796 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 +V+ G+ + S G+ Sbjct: 797 QLVELMGGQLSVSSAVGMGSTFTFTI 822 >gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 1165 Score = 357 bits (915), Expect = 7e-96, Method: Composition-based stats. Identities = 123/652 (18%), Positives = 236/652 (36%), Gaps = 42/652 (6%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 E +G+ F +V R + L ++ + + P Sbjct: 44 ERTGWPPFDMVENGRYQGISADYLRLLGERLGVQVDAVYYDDWEQALAALRKGEIDILPS 103 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 R + S + + P E + D + L Sbjct: 104 VARTPERESWMRFSDPYLISSSLIFSRP-----EVQIQRVADLAGKRVAIERGYVLQQRL 158 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352 ++ + + +L A + + + + + N + L L Sbjct: 159 RDEVPDVLLIEALNTEEALRAVSSGRADAY--------LGDMIVASYLIRRHNLTNLELR 210 Query: 353 KYKSVDDIEIAGGLST-------LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + EI G+ LLD S + + + R + R Sbjct: 211 GESGLSSSEIRFGVRRDLPQLVELLDRALASLSGEERETIRVRWLPPLTEFNWRKALQV- 269 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + F+ + + + + + + + L +++ A D I Sbjct: 270 -GWPYVLGLFVLIVFVLIWNRRLTVQ-----IAERQRAEAEARRQRSTLLALINAIPDPI 323 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 + +G+ N A + +FG E ++ + L+ + L Sbjct: 324 WFKDCDGVYRGCNPAFAAIFGRSPETVVGCRDEQLFDAELSRERAGLDRRALTSRMP--L 381 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E T + + + + + T DI+ K+ ++ ++ AK +AE+ Sbjct: 382 ETETWLTHADGRRVFYDTLRAAFYDDRGQLLGLVGTGRDITVRKEVEDAMARAKALAEQA 441 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + K+DFLA +SHEIRTP+ AIIG S + +PR +Y N I ++G +L ++ Sbjct: 442 AQAKADFLANMSHEIRTPMNAIIGMSHLALKTDL----DPRQRDYLNKIQQAGQHLLGVI 497 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+GK+ + L++ + +L+ A K + + +P +L D Sbjct: 498 NDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQVPCVLLGD 557 Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAM 757 + QI +N +NA+ FT G ++ I ++V + VRDTG+G++ + + Sbjct: 558 PLRLGQILINYANNAVKFTEHGEVEVSIELEKRDGKQVWLLFSVRDTGIGLSPAQQARLF 617 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q +S R GTGLGL + K + +A G+ + S +G+ P Sbjct: 618 ESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLP 669 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 34/144 (23%), Gaps = 5/144 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWY 144 W D G + + G ++G R + L + L + Sbjct: 323 IWFKDCDGVYRGCNPAFAAIFGRSPETVVGCRDEQLFDAELSRERAGLDRRALTSRMPLE 382 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +T L +G V D Y + G G G V + R Sbjct: 383 TETWLTHADGR--RVFYDTLRAAFYDDRGQLLGLVGTG--RDITVRKEVEDAMARAKALA 438 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 439 EQAAQAKADFLANMSHEIRTPMNA 462 >gi|220909146|ref|YP_002484457.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865757|gb|ACL46096.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1068 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 113/750 (15%), Positives = 231/750 (30%), Gaps = 30/750 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRL-CDVSDILHIDPNNHIGDLLKRQNT 142 WN D S E + G + V + + L + Sbjct: 188 VWNWDIPTNQVTWSAEYYRLYGLDPARTAPSYQNWLNSVVEQDRDRVHQAAQAALSDRID 247 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + T + ++ + R GI +R Sbjct: 248 LNVEFRILHP--TEGERWLTAIGQTLFDDTGQPK--RMTGIALDITQRKQAEKTLQRYQL 303 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + +I S + + + R + L + A + L +++ Sbjct: 304 LSEYSRDIVLYISRKGQILEANQAAVKAYGYSRNELLNLQLADLRAIQTLPLLWQQFEQA 363 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + + E Sbjct: 364 SEGGILFETIHQRKDGSQFPVEVSAQSAVIDGEMGVLSVIRDISDRRRSEIALRKSEEWA 423 Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + + +Y NL + + + + Sbjct: 424 RLAIQIGRVGGWRLYLDQNLVEMDERLREIWGESKDAVMVPIAKAMERIHPDDRERVKQA 483 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE---KANQFPENMPQNGIEPEDV 438 + + R I W + + + + G + Sbjct: 484 VYAAIDPASPGTYEIEYR---IVWEDGSERWVLAKGQAQFEGEAGSRQAVDFFGTLLDIT 540 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPF 497 + + + + +L L A G N I++ + + +FG P + Sbjct: 541 EHKQAETALRTTAERLGLALTAAKLGDWSWNAATDIVTFSEQAAAMFGIPPGPYMTWSQI 600 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 L + + + + ++ +E + E+ ++ + + Sbjct: 601 QNLLHVDDRARARLQVEQAIAEHSDYDIEYRVVDRQGRERWIAAKGRAQYDSSGQVLGML 660 Query: 556 LTMHDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + DI+ KQ + + + + K +FLA +SHE+R+PL I+G+S Sbjct: 661 GVVQDITHRKQAEAEREELLARERAAREAAEQANRIKDEFLAVLSHELRSPLNPILGWS- 719 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 K G L + + I+R+ L +++ DLLD+S+I GK++L V L + Sbjct: 720 --KLLLNGKLNLAKTQQALTTIERNARLQSELIEDLLDVSRILQGKLSLSVSSVDLASTI 777 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 AI V+L A K I I T A ++ + D ++Q+ N++SN + FTP+GG++ + Sbjct: 778 QAAIETVRLAAEAKSIQIETRLAPDVGLVAGDSTRLQQVVWNLVSNGVKFTPAGGRVAVR 837 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + + DTG G+ L F Q + + G GLGL + + +V+ + Sbjct: 838 LEQLEQ-QAQITISDTGKGIAPDFLPHVFDYFRQEDGATTRKFGGLGLGLAIVRHLVELH 896 Query: 789 MGKFYIFS-TPAKGTLIEIIFPLYDTSHPH 817 G S G + PL T P+ Sbjct: 897 GGTIQAHSPGEGLGATFTVRLPLLPT-QPN 925 Score = 84.7 bits (208), Expect = 6e-14, Method: Composition-based stats. Identities = 24/278 (8%), Positives = 73/278 (26%), Gaps = 15/278 (5%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363 + + E + + + + + + + Sbjct: 33 ITDRKQADLARQQQEQHFKIALQTAKLGSWEHDLTTGVLTCSAQCKANFGLPPDAEFTHD 92 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + L + AI+ + R+D + + + + Sbjct: 93 TLFAALHPDDRPRVEAAIQRAIAQRTD-----YEVEERCYHPDG-SLHWLIVRGRLVYDA 146 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + G+ + + ++ + +L +A + G+ + ++ + + Sbjct: 147 NDTPIRMVGVTLDITPQKQTEKTLRQSEERLRIAQQAANAGVWNWDIPTNQVTWSAEYYR 206 Query: 484 LFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 L+G + + + + ++ LS + L E L Sbjct: 207 LYGLDPARTAPSYQNWLNSVVEQDRDRVHQAAQAALSDRI--DLNVEFRILHPTEGERWL 264 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 I + L + + DI++ KQ + L + Sbjct: 265 TAIGQTLFDDTGQPKRMTGIALDITQRKQAEKTLQRYQ 302 >gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1572 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 115/585 (19%), Positives = 226/585 (38%), Gaps = 44/585 (7%) Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGEN 320 S E+ + + ++++S + E L + + + Sbjct: 497 GIRSQDERVQLYDTSGEMIFVSVSTDLVKDDSGQVTEVRFSLLDISEQEKVRLEMLKNQQ 556 Query: 321 LTPETVDKCPIPFFVYSHG-------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ + Y L Y +P+ ++T Y S D + Sbjct: 557 QYQVLLENIQGVVYRYRVDIHDEFEYTLQYLSPNVEVVTGYSSQDFLGDN--ARRTFVDI 614 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ L + + + R I+ + + ++ + +G Sbjct: 615 VIPEDRKELKAELSIAYQEQ-SFVTRDIRIKNAAKELRYLQIKAQFVYDEIGDTYYFDGT 673 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + ++ + ++++ +L E+ G+ + N + + GY V D+ Sbjct: 674 LFDITEQKLAENRLQLSEDKLKVAAESARMGMWDYYPTENKVVVNTMYANMLGYEVLDLC 733 Query: 494 ------------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + + + + + L + Q L + K+ + Sbjct: 734 IENEQWSTLNAGEQTWLELVHPDDREAVLDTLKAQSKSN-PQLLMREFRMQRKDGGYDWI 792 Query: 542 RIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + I ++ + S +I+E K + +L+ A +IA+ + K +FLA +SHE Sbjct: 793 -MSIGQVHHYTEEGDAGRISGVHLNINESKALQRELASAIEIADDANRAKGEFLANMSHE 851 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 I TP+ AIIG + + + Y RS +L I+ND+LD SKIE+GK+ Sbjct: 852 IHTPMNAIIGMTHLALKTELTK----QQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKL 907 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714 ++ L++ + + I+ V + EK + + IP IL D + QI N+ +N Sbjct: 908 DIETIQFRLEDVLEDIINFVGIKVAEKELELLFDIDPTIPAILQGDPLRLAQILTNLANN 967 Query: 715 AIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A+ FT G II +S +++EV V DTG+GMT + + K F Q S + Sbjct: 968 AVKFTEHGSVIIGVSIEKLTDDEVTLKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKY 1027 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814 GTGLGL + K + D G+ + S KG++ +FP+ + Sbjct: 1028 GGTGLGLAICKNLADLMGGEIGVSSEVNKGSIFYFESVFPIVEHH 1072 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 39/400 (9%), Positives = 103/400 (25%), Gaps = 39/400 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + + + G + DV + + + L+ + + L+ Sbjct: 450 DGNFIKHNRQFSLLAGVRREAFKSVNWRDVINKENDPIDTVFKQGLRGIRSQDERVQLYD 509 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G ++V + + + + + + R F ++ ++ + + K + L I+ Sbjct: 510 TSGEMIFVSV--STDLVKDDSGQVTEVR-FSLLDISEQEKVRLEMLKNQQQYQVLLENIQ 566 Query: 212 K-------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + S D V+ ++ L Sbjct: 567 GVVYRYRVDIHDEFEYTLQYLSPNVEVVTGYSSQDFLGDNARRTFVDIVIPEDRKELKAE 626 Query: 265 ------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314 E+S + + + + ++ Sbjct: 627 LSIAYQEQSFVTRDIRIKNAAKELRYLQIKAQFVYDEIGDTYYFDGTLFDITEQKLAENR 686 Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL---- 369 E+ + + + Y N N + + Y+ +D STL Sbjct: 687 LQLSEDKLKVAAESARMGMWDYYPTENKVVVNTMYANMLGYEVLDLCIENEQWSTLNAGE 746 Query: 370 -----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L P + +S+ + R+ + + M+ + Sbjct: 747 QTWLELVHPDDREAVLDTLKAQSKSNPQLLMREFRMQ--RKDGGYDWIMSIGQVHHYTEE 804 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + +G+ +++ +R+ L S +E D Sbjct: 805 GDAGRISGVHLNINESKALQRE-------LASAIEIADDA 837 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 60/158 (37%), Gaps = 13/158 (8%) Query: 430 QNGIEPEDVDTR--INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + I+ ++++ + + ++++ L + E + A +N +G + NR S L G Sbjct: 407 RLQIDNDNLERKIGLRTKELQEREEALWDLYENSFVAYASVNVDGNFIKHNRQFSLLAGV 466 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIII 545 E + + + + + LR ++ ++ +++ + + Sbjct: 467 RREAFKSVNWRDVINKEN-----DPIDTVFKQGLRGIRSQDERVQLYDTSGEMIFVSVST 521 Query: 546 KKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAE 579 + S + DISE ++ + ++ ++ + Sbjct: 522 DLVKDDSGQVTEVRFSLLDISEQEKVRLEMLKNQQQYQ 559 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 181/384 (47%), Gaps = 24/384 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + ++ + IL+ D I IN I N+ K+FGY ++++ + Sbjct: 581 ERQQTQEELRFSQARFARILDIADDAIISINGFHNITLFNQGAEKIFGYCAQEVIGQGLD 640 Query: 499 VFLEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + L Q ++ + R + G K+ I K+ Sbjct: 641 LLLPQRFFQAHRQHVADFGQSPNVARRMGERREIYGRRKDGSEFPAEASISKIDMGDEIF 700 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y++ + D++E KQ + K +F++ VSHE+RTPLT+I G ++ + Sbjct: 701 YTVILRDVTERKQIE--------------RMKDEFVSVVSHELRTPLTSIYGSLGMLASG 746 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + + S ++ ++ND+LDI +IESGK + E ++ + +++A++ Sbjct: 747 LL-PTDSEQGKRLLQIAADSTERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVN 805 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++Q A++ + + S + ++LAD + Q N+LSNAI F+ +G + + Sbjct: 806 VIQPLADKAGVTL--SISALSGQVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLG-AQQE 862 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 +EV+L ++DTG G+ +LE + F Q+ +S +GTGLGL + K+++ + G+ + Sbjct: 863 GDEVLLTIKDTGRGIPTDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIW 922 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817 S +G+ + PL+ T PH Sbjct: 923 AESILGEGSTFYVTLPLFGT-FPH 945 >gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 984 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 115/621 (18%), Positives = 241/621 (38%), Gaps = 33/621 (5%) Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + +G V ++ + + L + + + Y + + ++ L Sbjct: 121 MDQGVILVGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWGTLVSDTPL 180 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E+ ++ GT+ E + E+ + Sbjct: 181 QLSEEDPEATHTIAERRNADGTVLEIRTVRTEDGGLIQTLTDITERRSAEDRYRLLAENA 240 Query: 330 PIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G Y +PS + ++ + + L +L ++ + Sbjct: 241 TDLISLRPRGRDGRVYVSPSSRAVVGWEPEE-------FAQLRADQRLHPDDLDRVRREV 293 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + H ++ + + + PE + R + Sbjct: 294 TALTPDSPRRTSEHRLRHKAGHYVWVESTLLLTKPGTPEEA-VIVASRDVTARRAADAAL 352 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + + E T D IA + G++ + AV ++ GYP +++L + + + Sbjct: 353 RESEARHRLLAERTGDIIARADLNGVLRYLSPAVERVIGYPADELLGRSALSHIHPDDRP 412 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDIS 562 ++ + ++ + + + L + L + D++ Sbjct: 413 MVMRRYSALVEAGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGDLAPLGFVDVARDVT 472 Query: 563 EWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 K +L+ A + AE S K+DFLA +SHEIRTPL+++IG++E++ + Sbjct: 473 ARKAVDAELAAAREQAEAARIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDD-- 530 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R A+ I +G+ +L +V+D+LD SKIE+G+++L P +LD + A+++V Sbjct: 531 -AELTQRQHLQASRIRSAGSALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIV 589 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A K + IR +PR ++ D ++QI LN L+NA+ FT G +++++ + Sbjct: 590 RQLAERKGLEIRVELDPALPRALVGDQNRLRQILLNFLNNALKFTRRG-RVVLAVEKAGD 648 Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V DTG+G+ + + K F Q+ S + GTGLGL ++K +++ G Sbjct: 649 GAGGWPIRFSVTDTGIGIAPEQQARLFKRFSQVDGSIRREFGGTGLGLAISKKLIELMGG 708 Query: 791 KFYIFSTPAKGTLIE--IIFP 809 + S P +G+ ++ P Sbjct: 709 AIGVRSAPGEGSTFWFEVLLP 729 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 21/243 (8%), Positives = 61/243 (25%), Gaps = 3/243 (1%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D +G L+ +S + + IG A +++G L Sbjct: 372 RADLNGVLRYLSPAVERVIGYPADELLGRSALSHIHPDDRPMVMRRYSALVEAGPGARAK 431 Query: 148 TLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + + + V +++ +Y + + + A ++ Sbjct: 432 FEYRVRHRHGHDVWLEVNPTVLYDE-GDLAPLGFVDVARDVTARKAVDAELAAAREQAEA 490 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + S + + S + P + L + A + + ++ Sbjct: 491 ARIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLD-DAELTQRQHLQASRIRSAGS 549 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + L +D + + + ++ + + L P Sbjct: 550 ALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPALP 609 Query: 327 DKC 329 Sbjct: 610 RAL 612 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 26/365 (7%), Positives = 77/365 (21%), Gaps = 29/365 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPN-----NHIGDLLKRQNT 142 + ++ + + +G + G +V + P+ + L ++ Sbjct: 128 VGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWGTLVSDTPLQLSEEDP 187 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 T + I + + + + + L + Sbjct: 188 EATHTIAERRNADGTVLEI----RTVRTEDGGL-----IQTLTDITERRSAEDRYRLLAE 238 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + L ++ ++ S S + + L D L + + Sbjct: 239 NATDLISLRPR----GRDGRVYVSPSSRAVVGWEPEEFAQLRADQRLHPDDLDRVRREVT 294 Query: 263 TSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + A E Sbjct: 295 ALTPDSPRRTSEHRLRHKAGHYVWVESTLLLTKPGTPEEAVIVASRDVTARRAADAALRE 354 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E ++ +G L Y +P+ + Y + + + G S L Sbjct: 355 SEARHRLLAERTGDIIARADLNGVLRYLSPAVERVIGYPADELL----GRSALSHIHPDD 410 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ A + + + + + Sbjct: 411 RPMVMRRYSALVEAGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGDLAPLGFVDVARD 470 Query: 437 DVDTR 441 + Sbjct: 471 VTARK 475 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNH 511 L L+ G+ ++ + + NR + G E I +P + Sbjct: 114 LGKTLDCMDQGVILVGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWGT 173 Query: 512 YLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 +++ LS + + I + +L +R T+ DI+E + + Sbjct: 174 LVSDTPLQLSEEDPEATHTIAERRNADGTVLEIR---TVRTEDGGLIQTLTDITERRSAE 230 Query: 569 NKLSHAKKIAEKESSHK 585 ++ + A S + Sbjct: 231 DRYRLLAENATDLISLR 247 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 36/450 (8%), Positives = 98/450 (21%), Gaps = 25/450 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148 G +S +G + +R +D L + + Sbjct: 250 GRDGR-VYVSPSSRAVVGWEPEEFAQLRADQRLHPDDLDRVRREVTALTPDSPRRTSEHR 308 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L G ++V L + A + + + L Sbjct: 309 LRHKAGHYVWVESTLLLTKPGTPEEAV-----IVASRDVTARRAADAALRESEARHRLLA 363 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYP---LL 262 E + + + + + H DD + + Sbjct: 364 ERTGDIIARADLNGVLRYLSPAVERVIGYPADELLGRSALSHIHPDDRPMVMRRYSALVE 423 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-ESFEYLSHRNHPSLSAYFDEGENL 321 + + + + + L + ++ + D Sbjct: 424 AGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGDLAPLGFVDVARDVTARKAVDAELAA 483 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 E + + + ++ + G LLD +L+ + Sbjct: 484 AREQAEAA----RIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDDAELTQRQHL 539 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------GIE 434 + + + + + + + +PF + G+E Sbjct: 540 QASRIRSAGSALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLE 599 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 R + + +L IL + R G ++ G Sbjct: 600 IRVELDPALPRALVGDQNRLRQILLNFLNNALKFTRRGRVVLAVEKAGDGAGGWPIRFSV 659 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + + + + +++ R+ Sbjct: 660 TDTGIGIAPEQQARLFKRFSQVDGSIRREF 689 >gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1012 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 98/393 (24%), Positives = 171/393 (43%), Gaps = 14/393 (3%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 E + R + + ++ ++ ++ D I ++ +G I N +FGY ++++ Sbjct: 423 NELAERRRAEESLRESQERMQAVTDSAHDAIIMMGPDGEISYWNPMAESIFGYTAQEVMG 482 Query: 495 KPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 K L M + + +T+E +G E +SL + L Sbjct: 483 KSLHHLLAPERYHTDITKAMPEFQRTGQGNAVGKTIELSAIGKDGLEIPISLSMSSVLLQ 542 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DIS K + +L AK+ AE + KS FLA +SHE+RTP I+G ++ Sbjct: 543 GRWHAVGIARDISRRKAAEKELIQAKEQAEAANIAKSKFLANMSHELRTPFNGIMGMMQL 602 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++ N E+ N +S + ++ D+L++S IE+GKM++ E + Sbjct: 603 LQTTDL----NDEQQEFVNLAIQSSERFVRLLTDILELSNIEAGKMSICSAEFRTGELLE 658 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---- 724 L A +K I++ S ++P + D VKQ+ ++ NA+ FT SG Sbjct: 659 SLSDLFSAEALKKGIVLEFSMEPDVPEQVSGDKTRVKQVMFTLVGNALKFTESGSVQVHL 718 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 IS + + V DTG+G+ + +L PF Q+ S + +G GLGL L K + Sbjct: 719 TSISGAKGGDTRLKFSVSDTGIGIPDDKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRL 778 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 VD G + S +GT + ++ P + H Sbjct: 779 VDMMNGNISVESEVDRGTTVHVVLPFTLPAVDH 811 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 8/143 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKRQNTWY 144 + G + + G A +++G L + I + N Sbjct: 456 MGPDGEISYWNPMAESIFGYTAQEVMGKSLHHLLAPERYHTDITKAMPEFQRTGQGNAVG 515 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 L I L +PI L+ + + R + GI + ++ Sbjct: 516 KTIELSAIGKDGLEIPISLSMSSVLLQGR----WHAVGIARDISRRKAAEKELIQAKEQA 571 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQ 227 + K + + Sbjct: 572 EAANIAKSKFLANMSHELRTPFN 594 >gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 499 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 170/374 (45%), Gaps = 26/374 (6%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +I+E DGI II+ I + N A ++FGY ++I+ P + Sbjct: 124 QAIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHPIAHLIPDPLHRQY----- 178 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLS 572 +L +G K+ + I + L Y L + D + KQ + +L Sbjct: 179 ------KLISLGDEIIGRHKDTHSFPMDISSGQIILNNKRLYVLILRDATRRKQVEEELE 232 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A+ AE S KS FLA +SHE+RTPL AIIG+SE++ I R Sbjct: 233 RARDAAEAASRAKSTFLANMSHELRTPLNAIIGYSELLIEDAVDA-QEEDLESDLRRIHR 291 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L +++D+LDISKIE+GKM+L +E +L +S+ V A+++ T ++ Sbjct: 292 AGTHLLGLISDILDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSG 351 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------VILRV 741 I AD V+QI +N+L NA FT G I + ++ ++ V Sbjct: 352 QPGSIYADPVRVRQILINLLGNACKFT-ENGTISLRIAIEGDDYAAGHDKSTGNAILFEV 410 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+GM+ ++ + +PF Q +S + GTGLGL L + G + S +G Sbjct: 411 TDTGIGMSEDQMARLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQG 470 Query: 802 TLIEIIFPLYDTSH 815 + + P+ D Sbjct: 471 STFMVRLPMRDPEE 484 Score = 45.0 bits (105), Expect = 0.054, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 7/143 (4%) Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN--- 378 V+ + + NP+ + Y++ + I ++ L+ P Sbjct: 124 QAIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHP--IAHLIPDPLHRQYKLI 181 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + ++ D I N + + + Q E + + E Sbjct: 182 SLGDEIIGRHKDTHSFPMDISSGQIILNNKRLYVLILRDATRRKQVEEELERARDAAEAA 241 Query: 439 DTRINKRKMEIEVMQLCSILEAT 461 + + +L + L A Sbjct: 242 SRAKSTF-LANMSHELRTPLNAI 263 Score = 45.0 bits (105), Expect = 0.056, Method: Composition-based stats. Identities = 21/219 (9%), Positives = 54/219 (24%), Gaps = 14/219 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID H + + + G A ++IG + + DP + L+ + + Sbjct: 137 IDEHDRITTFNPAAERMFGYRADEIIGHPIAHLIP----DPLHRQYKLISLGD----EII 188 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + I + I + R + I+ +R Sbjct: 189 GRHKDTHSFPMDIS-SGQIILNNKRLY-----VLILRDATRRKQVEEELERARDAAEAAS 242 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 K + + + E D L S Sbjct: 243 RAKSTFLANMSHELRTPLNAIIGYSELLIEDAVDAQEEDLESDLRRIHRAGTHLLGLISD 302 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + ++ + + ++ + L+ + Sbjct: 303 ILDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQR 341 >gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1164 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 141/767 (18%), Positives = 263/767 (34%), Gaps = 55/767 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLL---KRQ 140 F + D+ + +S + +G GM + I + ++Q Sbjct: 125 FRYKFDSEFLITYVSPNVSLNLGYQTGDFKKGMLKIENLVHPDDKKQIEIEEKEYINQKQ 184 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 T+ + +G +Y+ + + + Y + + K Sbjct: 185 RTYQREFRFKKPDGHYIYIS-EYSVVSYYDSYPT----EKISYLSDISERKEKELEIKNQ 239 Query: 201 DKKFSHLH---EIKKGHSSVEKEKYDIFSQQ----------SPPPHLRMKNKVSSLTEYY 247 + + + E ++V + D+ P + N ++ Y Sbjct: 240 RDELNRIRVLFEETNAAANVGAWEVDLVHNSIYWAKETKRIHEVPEDYVPNLETAFQFYP 299 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLS 304 + + + + S + T + + N + + Sbjct: 300 VESEQIALKKAFEEAIKNRKSYEQILQIKTFTGKSKWVRTIGHGVFENEKCIRVFGSFQD 359 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 N +L +E + +D + +G + + N +Y + + I Sbjct: 360 ITNSVNLDKQKEEALSKLETILDATTHVTIIGTDINGIITHFNKGAEYHLQYTAEEMIGK 419 Query: 363 AGGL------STLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 L A LS A + T + Sbjct: 420 TSPSILHKEDEVLYRAESLSQEFGVPIFGFETFVHKA-RLGAFDSHEWTYIRKDGTEFPV 478 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + N E GI + + + + + LE + DGI N E Sbjct: 479 QLVITASKNPKGEITGFLGIGIDISAQKATEEALRESERRWQFALEGSGDGIWDWNAETD 538 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLG 531 + + + GY +I + + ++ P +N L + Sbjct: 539 QVYFSNQWKAMLGYADSEI-GTDISEWEKRVHPDDLNQCLLALEKHYNGETNIYMNEHRM 597 Query: 532 STKEEKLLSLRII---IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ + I++ T DI+ K +N L A++ AE S KS Sbjct: 598 KCKDGSYKWILDRGKVIERNEDGKPLRVIGTHTDITHRKILENDLIIAREKAENASIAKS 657 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTPL +IGF++++ N +Y + S +LD++ND+LD Sbjct: 658 NFLANMSHEIRTPLNGVIGFADLLMRTDL----NQVQRKYMETVHLSALSLLDLINDILD 713 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 SKIESGKM L+ E V++ + + + +V+ A EK + + + + +PR + D ++ Sbjct: 714 FSKIESGKMELYKERVNIFDLLHQIAEIVKHKAYEKGLELILNISPKVPRNVFVDSLRLR 773 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFG 761 QI LN++ NA+ FT G +I I T T E + V DTG+G+ K + F Sbjct: 774 QILLNLIGNALKFTLKG-EIQIKLTATPVNQNEFEFLFEVIDTGIGINKENQNKIFEVFA 832 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q +S + GTGLGL ++ ++ K + S G+ F Sbjct: 833 QADSSTTRQFGGTGLGLSISSKLLQLFDSKIELESELNHGSRFYFKF 879 >gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1131 Score = 356 bits (914), Expect = 8e-96, Method: Composition-based stats. Identities = 108/514 (21%), Positives = 202/514 (39%), Gaps = 32/514 (6%) Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + P+ + + + Y N F + + D + + + +L Sbjct: 328 RDIENILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY 387 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ--------WNRENSLAMTFIPFEKANQFPENMPQ 430 + + L + W S+ Sbjct: 388 DGTQT------PEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADI 441 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + + +E + A G+A++ ++GII +N A+S + P Sbjct: 442 TAVREREKEIHEARAALERLGEMMRDATHAMPQGLAVV-QDGIIKMSNEALSDILQIPAT 500 Query: 491 DI-----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 + F + + + ++ L T+ E+ +++ + Sbjct: 501 YLEPGEGWIGMFEFCAARGDFHDAAGEILQGWRDNIAARLPISTVFHVGGERWVNMDATV 560 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K + D++E K + +L AE KS+FLA +SHEIRTP+ ++G Sbjct: 561 SK---GQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLG 617 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E++ R + + I +SGN +L I+ND+LD SKI++G+M L + Sbjct: 618 MAELLAKTNLDT----RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDIT 673 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 EAV + +L+ +A EK I + A ++P ++ D +QI N++ NA+ FT G Sbjct: 674 EAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHV 733 Query: 725 -IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + + E++ +R+ DTG+G+ +LE F Q+ S R EGTGLGL + Sbjct: 734 FVDVGFQPAAGGEIMASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAIT 793 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +VD G + S KG++ I P + Sbjct: 794 AGLVDLFGGYLNVESEWGKGSVFTINLPFAVAAA 827 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 60/521 (11%), Positives = 132/521 (25%), Gaps = 96/521 (18%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLW 150 ++E + +G IG R ++ D D + L Sbjct: 28 ELRYVAVNEAYARFLGREISDFIGGRSRELLDRPEEEDREDKERRAL------------- 74 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G I A G ++ Sbjct: 75 ------------------------VFGTEENAICFD--------AAGLSHERIQIE---- 98 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 S Y + + P R ++ D + + + Sbjct: 99 --SFSPSLDRAYVLGIFEVREPTRRAIGDPGIASDPGMTGDAGVAADFARV--------- 147 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 +E ++ L N+ + + +L ++ P Sbjct: 148 -REALEQLDYPIGIFAGDGRPLVVNAAYRNDAKPAAVSDAAWHESVNELDLLRTILEDLP 206 Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + FV L YAN + + + + + + L AI L Sbjct: 207 VAAFVRDEKHRLVYANQYYETFSGHSRSRVLGLTE-----HEMFGLDGGEAIYQENLLAL 261 Query: 390 DRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + + + ++ A+ P + D + + Sbjct: 262 EGGT-SKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKDREKALIEAQ 320 Query: 449 IEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ 503 L +IL + G+ I++ + IL N ++ P++D +PF + + Sbjct: 321 KHKEVLHRDIENILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRR 380 Query: 504 N----------TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 N TP + + + + + +E G K + I + + Sbjct: 381 NYELGRYDGTQTPEEIYDFRKHLFETEEPEPIELGWAG----GKSV---IFDSRRISNDR 433 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 LT DI+ ++ + ++ A + + +H Sbjct: 434 ILLTYADITAVREREKEIH----EARAALERLGEMMRDATH 470 Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 47/437 (10%), Positives = 107/437 (24%), Gaps = 51/437 (11%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFD-PIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108 + + + N LD T + D P+ VR D L ++ G+ Sbjct: 177 DAKPAAVSDAAWHESVNELDLLRTILEDLPVAAFVR-----DEKHRLVYANQYYETFSGH 231 Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWYGKTTLWPIEGTNLYVP---- 160 +++G+ ++ +D I L+ + ++ L +G V Sbjct: 232 SRSRVLGLTEHEM---FGLDGGEAIYQENLLALEGGTSKEIESLLPSKDGHIYSVLSRVN 288 Query: 161 --IDLAALP-----------IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + P + R + + V + R + Sbjct: 289 RVVTADGRPYVVGSFSDISPLKDREKALIEAQ-----KHKEVLHRDIENILRSLPVGVLI 343 Query: 208 HEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + V E Y I+ P R V D E+ Sbjct: 344 LDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRYDGTQTPEEIYDFRKHL 403 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS------LSAYFDEGEN 320 E E + + N+ A + Sbjct: 404 FETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADITAVREREKEIHEARAALERLGE 463 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNN 379 + + P V G + +N + + + + G + A + ++ Sbjct: 464 MMRDATHAMPQGLAVVQDGIIKMSNEALSDILQIPATYLEPGEGWIGMFEFCAARGDFHD 523 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A ++ D IAA + T+ + + + + Sbjct: 524 AAGEILQGWRDN--IAARLPISTVFHVGGERW------VNMDATVSKGQHWVALFTDVTE 575 Query: 440 TRINKRKMEIEVMQLCS 456 + + ++ + + + Sbjct: 576 LKSREEELRQLLSRAEA 592 >gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 454 Score = 356 bits (914), Expect = 9e-96, Method: Composition-based stats. Identities = 117/437 (26%), Positives = 192/437 (43%), Gaps = 11/437 (2%) Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + D L E L T P + P G + Sbjct: 14 RALAVLGPDGLLAHVGETLSRALGTAEPRLIGT-RPGWVDGPDCTHTPLPGGQTLVELAP 72 Query: 442 INKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPF 497 + ++ + ++ +I+E T + I +++ +G +L NR G +L F Sbjct: 73 EAETRLRDSLRVNVEMRAIIENTFEFIGLLSPDGRLLDANRTALAFIGLDSLAPVLGMHF 132 Query: 498 TVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 L I + + T + + + +K +P L Sbjct: 133 AETPWWEHSPEERAILRDGISRAAKGEFVRFETTHVDADGGIAYVDFSVKPVPDHEGNIL 192 Query: 557 TM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI++ K+ + L AK+ AE + KS FLA VSHE+RTPL A+IGFSE I Sbjct: 193 FLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILA 252 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 GP R +EY + I +G + ++ D+LD+S+IE+G+ L E E V A Sbjct: 253 GATGPASLERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAA 312 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L++ A + A ++PR+ D R ++Q+ LN+ NA+ FTP+GG++ IS H Sbjct: 313 RLLEHKAVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHV 372 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + L V DTG+G+ K + F Q +S R +G+GLGL + + V+A+ G Sbjct: 373 PEG-LALTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTV 431 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KGT I ++ P Sbjct: 432 SLASEAGKGTRITVLLP 448 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 18/232 (7%), Positives = 48/232 (20%), Gaps = 6/232 (2%) Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 S D L L+ + + + + Sbjct: 12 SPRALAVLGPDGLLAHVGETLSRALGTAEPRLIGTRPGWVDGPDCTHTPLPGGQTLVELA 71 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 + E + T + + G L AN + L S+ + Sbjct: 72 PEAETRLRDSLRVNVEMRAIIENTFEFIG---LLSPDGRLLDANRTALAFIGLDSLAPVL 128 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 T + ++ + + + + F Sbjct: 129 GMHFAETPWWEHSPEERAILRDGISRAAKGEFVRFETTHVD---ADGGIAYVDFSVKPVP 185 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + + + + + + + A S +A ++ E Sbjct: 186 DHEGNILFLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELR 237 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 30/278 (10%), Positives = 64/278 (23%), Gaps = 21/278 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLL------ 137 F + G L + + IG + ++GM + L Sbjct: 98 FIGLLSPDGRLLDANRTALAFIGLDSLAPVLGMHFAE--TPWWEHSPEERAILRDGISRA 155 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + +TT +G Y +D + P+ G A Sbjct: 156 AKGEFVRFETTHVDADGGIAY--VDFSVKPVPDHEGNILFLVPEG--RDITQRKRAEAAL 211 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--DVLK 255 ++ + K + + + + + D++ Sbjct: 212 VAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILAGATGPASLERCVEYMDLIH 271 Query: 256 TEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + L E L E T + E ++ + + A Sbjct: 272 SAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIA 331 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351 L P + + + GN P+ + Sbjct: 332 PDLPRMRLDPRRIRQ----VLLNLAGNALKFTPAGGRV 365 >gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 596 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 117/477 (24%), Positives = 204/477 (42%), Gaps = 20/477 (4%) Query: 340 NLFYANPSFLLLTKY-KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 L Y +LT + + + G +L L N A + LYR+ + A Sbjct: 128 ELVYTAQGLWVLTGSNGPLWYVGVVNGYGMVLVGTLLMINQARRSRALYRAQALSLLVGA 187 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 L W P + P +G+ R + +I+ Sbjct: 188 LL---PWVTSILFVTGRSPILYIDTTPVAFALSGLTFNVAMRRFRVLDLLPAARD--AIV 242 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + SD I +++R +L N A +LF ++ +P TV + Sbjct: 243 DQISDAIIVVDRHDRVLDLNPAA-QLFFADQTAVIGQPLTVVAPTWLYEQVRDRYEGQFE 301 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576 L+ + + LR + + DI+ KQ L AK+ Sbjct: 302 LNQPTSEGML---------TYDLRCTTLRDRRGMAMGRIFVLRDITLLKQAALALQKAKE 352 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE + KS FLA +SHE+RTPLTAI+G+SEVI++ N + + + +G Sbjct: 353 AAEAANQAKSTFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIAD-LDRVVLAGRH 411 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L+++ND+L+++++E+ + ++ EP+ L E V+E +S A + + + N+P Sbjct: 412 LLNLINDILELARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPP 471 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + AD ++Q+ LN++ NA FT G QI + + + V DTG+G+ +L Sbjct: 472 VKADPTRLRQVLLNLIGNACKFTEQG-QIHVRCYSPQPGIIQIDVSDTGIGIPPEQLASL 530 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +PF Q+ N R G GLGL +++ + A G+ + S P +G+ + P+ DT Sbjct: 531 FQPFMQVDNGTTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLPVADT 587 >gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens DM4] Length = 803 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 192/501 (38%), Gaps = 19/501 (3%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D P ++ G L + N + T + A L P Sbjct: 24 PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 80 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + A + + + ++ + N + G Sbjct: 81 LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 136 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +TR+ + + + ++++A++ I +G ++ + + G E Sbjct: 137 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 196 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + + + + E + E +E + + + Sbjct: 197 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSI 254 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+ K+ + + HA+ AE + KS FLA +SHE+RTPL+A+IG+SE + Sbjct: 255 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 313 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + LG + I+ S +L ++ND+LDISKIE+G++ L E + + + Sbjct: 314 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 373 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + Q +KR R F ++ + D ++Q +N++ NA F+ G +II+ Sbjct: 374 TAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIILGVRR 432 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V DTG+G+T ++ + + F Q S + GTGLGL + +A V+ Sbjct: 433 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 492 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + ST +G I P Sbjct: 493 GGTIGVESTFGEGATFTIRLP 513 Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 T Q+ + + F + W +A G L + G +M Sbjct: 13 TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 68 Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + H++ + +W L +G Y A P+ + Sbjct: 69 DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 126 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 R +G + +++F L + + ++ Q Sbjct: 127 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 184 Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + + D E + + + + + Sbjct: 185 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 244 Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313 + E++ + Sbjct: 245 VPVLAEDGSIREWVGLNIDITARK 268 >gi|158334015|ref|YP_001515187.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158304256|gb|ABW25873.1| two-component sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 714 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 96/583 (16%), Positives = 212/583 (36%), Gaps = 69/583 (11%) Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 H + + + L+ + ++ L+ L A ++ V+ P+ Sbjct: 145 AHQCSAPREWQAFEVDLLKQLADQAGIALAQAK---LLADLNQAHQQLRFHVENSPLAVI 201 Query: 335 VYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-----------------PKLS 376 + H + + + + + I + P + Sbjct: 202 EWDHACRIQRWSAQAERIFGWSGEEVIGRGPDHWFIHTDDLHLFREHVLNLTGHPFPNYA 261 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + Y I + ++ A Q E Q Sbjct: 262 NPDMERLTRNYTKAGDLIDCEWYSSALFDAEGNLVSILSMAQDVSARQQAEAALQQLNRE 321 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ ++ + S+ EA D I +++ +G+I N V + GY ++ Sbjct: 322 LEMRVEQRTAALQESEQRFRSLFEAAPDFIYVLDTKGVIQHVNPVVIERSGYRKSELEGH 381 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 PF + + ++L+ + + K K+L++ K + Sbjct: 382 PFINLFAPKSQVLCQQQFGDLLAQGSHR---QELEFMGKNGKILTVDCSFKVVKDPLGKT 438 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DIS+ K + K +F++ VSHE+RTPLT+I G +++ Sbjct: 439 SILVVQRDISDRKALE--------------RIKDEFISVVSHELRTPLTSIHGSIKLLAT 484 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + G L + + + D++ + ++ +V+D+LD+ +IESG+ + + ++ A Sbjct: 485 GQLGDLSDDGQ-QMLDIADQNTDRLVRLVSDVLDLQRIESGQAKISKHLCDAADLMTHAT 543 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 ++ A ++ ++++ + + A+ + Q N++SNAI F+ GG + ++ Sbjct: 544 DAMRSMAYHHQVTLKST--PLLTMVWANPDYMVQTLTNLISNAIKFSQPGGTVELAAELR 601 Query: 733 ------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 + E+ +V D G G+ +LE + F Q+ S Sbjct: 602 IEERRAKDSSSPPESHDTPFPITIKHTELWFQVIDQGQGIPADKLESVFERFQQVDASDA 661 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL + + +V+ + GK + S +G+ + P+ Sbjct: 662 REKGGTGLGLAICRKIVEQHGGKIWAESVLGQGSCFFVALPMS 704 >gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase [Desulfotomaculum reducens MI-1] Length = 453 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 168/367 (45%), Gaps = 26/367 (7%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPS 507 E + +IL + +DG+ +++ G ++ N V ++F + L + Sbjct: 110 EERNRARAILNSMADGVIALDKYGQVILINPVVEEIFKIKETNWLGNKIIKVIRNHELEE 169 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + L + + + T + +L ++ + K + D++E + Sbjct: 170 LFIRALHSM-----QPVMNSELQVLTPQPRLFNIHVTPLKGNNDEKIGVVGLITDVTERR 224 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + +++F+A VSHE+RTPLT+I GF E + + R Sbjct: 225 KLE--------------RMRTEFVANVSHELRTPLTSINGFVETLLDGAIEEPIIAR--N 268 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I G + +I++DLL +S++E + L+ +PV L E + I++ + A EK I Sbjct: 269 FLEIISAEGKRLANIIDDLLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQ 328 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I T + +P + D + Q+ +N++ NAI +T +GG + IS + EV + V DTG Sbjct: 329 ITTEISPKLPLVPGDQGFLSQVMINLVDNAIKYTLTGGTVHISVKFNEH-EVTVTVSDTG 387 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + + + F ++ ++ GTGLGL + K +++A+ GK + S G+ Sbjct: 388 IGIPIESIPRVFERFYRVDKARSREMGGTGLGLSICKHIMEAHGGKIRVESDS-SGSQFS 446 Query: 806 IIFPLYD 812 PL + Sbjct: 447 FSLPLKE 453 >gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134] Length = 2102 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 137/747 (18%), Positives = 251/747 (33%), Gaps = 86/747 (11%) Query: 96 KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 +SE G + I + D+ H ++N + ++ Sbjct: 1189 VFVSEGSTALTGITPEEFIEGKRKFNDIILPEHKTILWEEAQTALKENRPFEVEYPVMVD 1248 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRG-------FGIVHVNRVDNDPRALGKRLDKKFSH 206 G ++ +G G G + + + L Sbjct: 1249 GQIKWLW----------EKGRLTGQPGDVKEPMIEGFIADITDRKNAQEELLALKNDLER 1298 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 Q +++S L + + LK ++ L + E Sbjct: 1299 QV------------------TQRTKELRESNHQLSLLLQESQENAETLKAQEEELRQNVE 1340 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 N + FE + L F Sbjct: 1341 QLNKTNVALERKQQEL-----------NEAHSRFELIHQGIGEGLWEIFVPQNKKLG--- 1386 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 L + +P L + S D+ P+ + + Sbjct: 1387 -----------KEALAWVSPKMLNILDITSPDNHIDL-TAWHNKIHPEEREEVIQRFETY 1434 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + N E +++ G + + + Sbjct: 1435 INNPDWIQPYFVEYRMLMGNGE-YHWFRESGIVARDEYGNPSKVAGSLINIHEKKHAEEA 1493 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQN 504 + +L LEAT DG+ I+ + ++ G+ ++ + + + L Sbjct: 1494 LRESEARLQYALEATRDGLYDIDMLEDRTFASSNYYRMLGFEPDEFDVNGQVWRKLLHHE 1553 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIKKLPFSSCYSLTMH 559 + + L+ K+ + + ++ + TM Sbjct: 1554 DKEKVITAFDQYKELNFP-FYSIEYRMQCKDGEYKWFLDRGKAVEFSQVGKAIRTIGTMT 1612 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I E K+ + L AK AE S KS FLA +SH++RTPL I+G+++++K ++ Sbjct: 1613 NIDERKRYEEDLQSAKAAAEAASQAKSVFLASMSHDLRTPLNGILGYAQILKKEKNIT-- 1670 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P + I+RSG +L ++ND+L +SKIESGK+ L + + V +S+ +++A Sbjct: 1671 -PPQRDGLQIIERSGEQLLLLINDILHLSKIESGKLELENNDFNFADFVKNVVSITRVWA 1729 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----- 733 K I R +P + D + ++QI N+LSNAI FT GG + THT Sbjct: 1730 ENKNIDYRFESPAQLPYFVNGDEKRIRQILFNLLSNAIKFTDEGG-VTFRITHTPHPTKV 1788 Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 N + V DTG G+ + K +PF Q+ S+ + EGTGLGL + +V G Sbjct: 1789 LNHIFVFEVEDTGTGIPKDTIAKIFEPFHQVRGSR-HQAEGTGLGLAICNRLVKLMDGSI 1847 Query: 793 YIFSTPAKGTLIEIIF--PLYDTSHPH 817 + ST KG+L ++ P+ ++ P Sbjct: 1848 QVESTLGKGSLFKLTIDMPVTNSELPQ 1874 Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats. Identities = 58/531 (10%), Positives = 141/531 (26%), Gaps = 50/531 (9%) Query: 86 TWNIDAHG--YLKEISEELPKTIGNY-----AFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 + ++ G L+ ++ + + ++IG+++ + ++ + ++ Sbjct: 648 LFKVEEEGMPVLESTNQHVIEMFAFRGEVITPAELIGVKIDEYYKRAFYQDDDKLHREIQ 707 Query: 139 RQNTWYGK------TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 R K T ++G + + PI + + + I + Sbjct: 708 RVKRVLKKKQEVLFTDRLDLDG-GKVLFRENRLTPIINEQGDCTHL--LIISRDITKNRI 764 Query: 193 PRALGKRLDKKFSHLHEIKKGHSS----------VEKEKYDIFSQQ--SPPPHLRMKNKV 240 +A K + + E + + Y I Q PP + Sbjct: 765 AKAALKESETRLKLAIEAAHQGLWDWDIRANENYLSPDFYRILGYQYYENPPIPFKPDYD 824 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKES 299 L+ + + + L E + + + +Q N Sbjct: 825 QWLSHVHPDDRPKVANFQQRYLDEEIPKYEVELRIRCKDGSYKWVASKGQIVQKNRLGIP 884 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPF-FVYSHGNLFYANPSFLLLTKY 354 + N + + DE + E TV P+ + N N +T Y Sbjct: 885 IRMVGIINDITERKHTDELLRRSEEQMKMTVQNVPVMINALDEKLNFVMWNAECERITGY 944 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 S + I L+ K + ++ + D + + I + + Sbjct: 945 SSQEIIGNRHVFQMLIPDDKYRKK-VYRQWLVRKGDFK----NWEVAIICKDGTEKIISW 999 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + G+ + D + L + A G+ + + Sbjct: 1000 TQNSKHYPIAG--WAHWGVGVDVTDRNKALYALRDSEETLKLAMNAAKQGLWDWDTKNN- 1056 Query: 475 LSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + L GY + + + + + + + L+ + Sbjct: 1057 KYNSFQYYHLLGYRPNEFEATHENWVSLIHPDDVQNVLNTQQRYLTAETP-DYSLEYRMR 1115 Query: 533 TKEEKLLSLRI---IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578 K+ + + + DISE KQ L +++ Sbjct: 1116 AKKGTYKWFFAKGKTVARDEQGRPERMIGIISDISELKQATQSLRESERQL 1166 Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 108/396 (27%), Gaps = 11/396 (2%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ L + + + ++ + + + + ++ K Sbjct: 653 EEGMPVLESTNQHVIEMFAFRGEVITPAELIGVKIDEYYKRAFYQDDDKLHREIQRVKRV 712 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFD 316 L +E ++ D ++ + N + L + A Sbjct: 713 LKKKQEVLFTDRLDLDG--GKVLFRENRLTPIINEQGDCTHLLIISRDITKNRIAKAALK 770 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVD--DIEIAGGLSTLLDAP 373 E E ++ + + Y +P F + Y+ + I L Sbjct: 771 ESETRLKLAIEAAHQGLWDWDIRANENYLSPDFYRILGYQYYENPPIPFKPDYDQWLSHV 830 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D + D L + + + N+ + GI Sbjct: 831 HPDDRPKVANFQQRYLDEEIPKYEVELRIRCKDGSYKWVASKGQIVQKNRLGIPIRMVGI 890 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + Q+ ++ I ++ + + N ++ GY ++I+ Sbjct: 891 INDITERKHTDELLRRSEEQMKMTVQNVPVMINALDEKLNFVMWNAECERITGYSSQEII 950 Query: 494 R-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + L + Y ++ + E + EK++S K P + Sbjct: 951 GNRHVFQMLIPDDKYRKKVYRQWLVRKGDFKNWEVAIICKDGTEKIISWTQNSKHYPIAG 1010 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + D+++ + L +++ + + Sbjct: 1011 WAHWGVGVDVTDRNKALYALRDSEETLKLAMNAAKQ 1046 Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 28/383 (7%), Positives = 91/383 (23%), Gaps = 26/383 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 +D + E + G + ++IG + + L+++ + + Sbjct: 925 LDEKLNFVMWNAECERITGYSSQEIIGNRHVFQMLIPDDKYRKKVYRQWLVRKGDFKNWE 984 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +GT + S++ +G+ +G+ N + ++ Sbjct: 985 VAIICKDGTEKIISWTQN-----SKHYPIAGWAHWGVGVDVTDRNKALYALRDSEETLKL 1039 Query: 207 LHEIKKGHSSVEKE------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 K + + P+ + ++ + + + Sbjct: 1040 AMNAAKQGLWDWDTKNNKYNSFQYYHLLGYRPNEFEATHENWVSLIHPDDVQNVLNTQQR 1099 Query: 261 LLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYF---- 315 LT+E + + ++ + + S Sbjct: 1100 YLTAETPDYSLEYRMRAKKGTYKWFFAKGKTVARDEQGRPERMIGIISDISELKQATQSL 1159 Query: 316 DEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E E + P + + + + + LT + IE + ++ Sbjct: 1160 RESERQLSTLMSNLPGMVYRCHNNQERPMVFVSEGSTALTGITPEEFIEGKRKFNDIILP 1219 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + + + + + G Sbjct: 1220 E--HKTILWEEAQTALKENRPFEVE---YPVMVDGQIKWLWEKGRLTGQPGDVKEPMIEG 1274 Query: 433 IEPEDVDTRINKRKMEIEVMQLC 455 + D + + ++ L Sbjct: 1275 FIADITDRKNAQEELLALKNDLE 1297 >gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1255 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 118/696 (16%), Positives = 239/696 (34%), Gaps = 41/696 (5%) Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 +P L+ + + P+ G + + LAA+ + + Sbjct: 151 EPLRPTLAALEFHDPDRFDPEVLPLLG---MLALQLAAVARREADLQL--------ARQR 199 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 A+ + + + + V +I R + + Sbjct: 200 DEQLAQVAMLASRTGRSTVITDQNGRIEWVHPAFAEITGHLPLEVQGRPLWEALARDLTR 259 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + L+T + + Y + + + + +++ + Sbjct: 260 SDAAAQLRTLFAGSGAFRHEFVARRGQACAEPGQPYWLEVDAAQVIDETTGRLQFVCLCS 319 Query: 308 HPSLSAYFDEGENLTPETV----DKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIE 361 S + G + E + + PI V + N + Sbjct: 320 DISSRKAHESGNDEQRELLAALTENLPISLLVLDAQRMQVLSLNRHAQIEFGVSPT---P 376 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 GL +L A A +L R A ++ Sbjct: 377 GNSGLDDMLGAGLHERIRAELDEVLQR----PGAVEHEFVWPTVEGRR--VISARHVAVQ 430 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRA 480 ++ + R ++ ++ + ++E +G+ I N Sbjct: 431 DRHGPPRVVITQLRDVTRQRRDELRLRESETRYRELVETIDEGVFISNPARDQWYYIGPR 490 Query: 481 VSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + ++ G V D P + + ++ +L+ +I L Sbjct: 491 MYQMLGLKVADRREHPDLLQSLVLPDDARLLAQQREHEEALEATDVTLRIRHPGRGLRWL 550 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + D+++ ++ +L A+ +AE S KS F+A +SHEIRT Sbjct: 551 RQRTRTRVLPGGETRVYGLLDDVTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRT 610 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ I+G +E++ R + R +A + RSG +L+I+ND+LD SKIE+G++ L Sbjct: 611 PMNGILGMTELLLGTRL----DDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELA 666 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 +L + + + L+ A+EK + + ++P +LAD ++Q+ N+++NA+ Sbjct: 667 PTDFNLRTLIEDTLDLLAPRAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVK 726 Query: 718 FTPSGGQIIISTTHTSN------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 FT G ++ + + RVRDTG+GM L + F Q R Sbjct: 727 FTEHG-EVTVDLRFLPRPRAGAPAMLEFRVRDTGIGMAAELLPRLFTAFTQAHGGMARRY 785 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL +++ +V+ G+ + S P G+ Sbjct: 786 GGTGLGLAISRQLVELMGGQIDVVSQPGVGSEFRFT 821 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 48/402 (11%), Positives = 101/402 (25%), Gaps = 31/402 (7%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--H 126 D + V RT R T D +G ++ + + G+ ++ G L + Sbjct: 200 DEQLAQVAMLASRTGRSTVITDQNGRIEWVHPAFAEITGHLPLEVQGRPLWEALARDLTR 259 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGF-G 182 D + L + + +++ A + +G F Sbjct: 260 SDAAAQLRTLFAGSGAFRHEFVARRGQACAEPGQPYWLEVDAAQVIDET---TGRLQFVC 316 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK----------YDIFSQQSPPP 232 + + + + L E V + I SP P Sbjct: 317 LCSDISSRKAHESGNDEQRELLAALTENLPISLLVLDAQRMQVLSLNRHAQIEFGVSPTP 376 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + + + + ++ + + P E P E I+ + G Sbjct: 377 GNSGLDDMLGAGLHERIRAELDEVLQRPGAVEHEFVWPTVEGRRVISARHVAVQDRHGPP 436 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFLL 350 + + E E E V+ F+ + Y P Sbjct: 437 R---VVITQLRDVTRQRRDELRLRESETRYRELVETIDEGVFISNPARDQWYYIGPRMYQ 493 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + K D E L +L+ + + R + A+ I+ Sbjct: 494 MLGLKVADRREHPDLLQSLVLPDD------ARLLAQQREHEEALEATDVTLRIRHPGRGL 547 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + E G+ + D R +++ Sbjct: 548 RWLRQRTRTRVLPGGE-TRVYGLLDDVTDERERALQLQAARD 588 >gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 777 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 107/585 (18%), Positives = 207/585 (35%), Gaps = 24/585 (4%) Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFG 290 L D + + + +++ + Sbjct: 54 LRVSPRTEVILVSGEPTLDTAMAAVRAGANDYIVKPVTKEKITRVVGRAAKLKLNSDDLM 113 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349 L+ + E L + E E + + + GN+ NP+ Sbjct: 114 RLREENLIYQEKLERLVEERTQSLL-ESETKYRDVFEGALFMIHILDTEGNILNVNPAMC 172 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 +++ + + I+ L ++ I V R+ + I + + Sbjct: 173 NTLEFEKGELLGIS------LLEIVSEEDREIAEVNFERARLGESVKEYEVKLISKSGKL 226 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 Q + + G ++ + + ++ E + + ++++ D I + Sbjct: 227 VHV--RAAANPIVQDGKVVSIQGNLIDETKRKTAEAELADERVLMRTLMDNIPDSIYFKD 284 Query: 470 REGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 E L +R S LFGY E++ + + I+ ++K Sbjct: 285 LESRFLQVSRFQSNLFGYERPEELCGLSDFDIFQGDMARKKFEDEQSIIRTGTP-IIDKE 343 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + L S DI+ K+ + LS A + A + S Sbjct: 344 EKEKFLNGEAQYVSTTKMPLRSVSGEVIGTFGVSRDITNRKRLEQNLSFALERALEASRL 403 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+F+A +SHE+RTP+ I+G ++++ + + A I + G ++ I++D+ Sbjct: 404 KSEFIATMSHELRTPMNGILGMADILLLTEL----SESQKDSAKLIKKCGQNLMSIISDI 459 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703 LD SKIE+ L EP+ + V+E ++ + A K I +R + I D + Sbjct: 460 LDFSKIETRNFQLEVEPLEIQLIVNETLAFFRPKAESKGISLRCEIDEHCSDIFYGDSKR 519 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N++ NAI FT G + + + + V DTGVG+ K + F Q Sbjct: 520 IRQVLTNLVGNAIKFTEEG-YVRVRADFLGEGRMRIEVEDTGVGIDEVFQSKVFQAFTQE 578 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S R GTGLGL + K +V+ G S G+ Sbjct: 579 DGSDSRRYGGTGLGLAITKQLVELMGGLIDFDSQVGVGSRFWFEI 623 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 26/234 (11%), Positives = 77/234 (32%), Gaps = 8/234 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147 +D G + ++ + T+ +++G+ L ++ + + ++ + Sbjct: 158 LDTEGNILNVNPAMCNTLEFEKGELLGISLLEIVSEEDREIAEVNFERARLGESVKEYEV 217 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSH 206 L G ++ + AA PI ++ + +G I R + A + L + Sbjct: 218 KLISKSGKLVH--VRAAANPIV-QDGKVVSIQGNLIDETKRKTAEAELADERVLMRTLMD 274 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLT 263 +E + QS ++ L+++ + D+ + ++ ++ Sbjct: 275 NIPDSIYFKDLESRFLQVSRFQSNLFGYERPEELCGLSDFDIFQGDMARKKFEDEQSIIR 334 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + ++E +N L++ S E + ++ Sbjct: 335 TGTPIIDKEEKEKFLNGEAQYVSTTKMPLRSVSGEVIGTFGVSRDITNRKRLEQ 388 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 21/178 (11%), Positives = 43/178 (24%), Gaps = 8/178 (4%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN-Y 109 Q N D+ + + D + D ++S G Sbjct: 246 QGNLIDETKRKTAEAELADERVLMRTLMDNIPDSIYFK-DLESRFLQVSRFQSNLFGYER 304 Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALP 167 ++ G+ D+ + R T + + G YV +P Sbjct: 305 PEELCGLSDFDIFQGDMARKKFEDEQSIIRTGTPIIDKEEKEKFLNGEAQYVSTT--KMP 362 Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + S + E G FG+ ++ +K + + Sbjct: 363 LRSVSGEVIGT--FGVSRDITNRKRLEQNLSFALERALEASRLKSEFIATMSHELRTP 418 >gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911] Length = 587 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 172/366 (46%), Gaps = 23/366 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E++ +L +++E G+ +I+ G I N+ ++FG + + + Sbjct: 238 KAQEMQQDRLGTLIENMGSGLILIDSRGYISLVNKPYYEIFGLEPHGYVGNLYYEVI--- 294 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDIS 562 + + +I + ++T +++ + E K + + L HDI+ Sbjct: 295 EQKEITDLVEDIFMTE-QKTRKQMVIPVAIERKHFEVYGVPIIGTNDVWKGILLVFHDIT 353 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + + DF+A VSHE++TP+T+I GFSE + + Sbjct: 354 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAMH--DQAA 397 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + I + + + ++ DLLD+SK E L + + L + E ++++ A +K Sbjct: 398 LSAFLDIILKESDRLQSLIQDLLDLSKTEQQGFRLSVQEMDLSSLLGECLAILNGKAKDK 457 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I I S + I D +KQ+ +N+L+NAI +TP GG+I +S ++V + V+ Sbjct: 458 AIDIEYSDQSGNGWIKGDPHRLKQVFINLLTNAITYTPQGGKISVSLE-EKEDKVQVEVK 516 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E+ + + F +I ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 517 DTGMGIDQDEIPRIFERFYRIDKARSRNSGGTGLGLAIVKHLVEAHKGSITVESEVGKGT 576 Query: 803 LIEIIF 808 ++ Sbjct: 577 TFKVQL 582 >gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396] gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396] Length = 1437 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 106/563 (18%), Positives = 207/563 (36%), Gaps = 31/563 (5%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 P + I T + + R + +A L ++ Sbjct: 456 PIRNADGEIVGAAKTIRDISRQISIENQIRELNASLERQVEARTAEIRRYLALQQAILNN 515 Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVML 386 G + NP+ + Y + + + + L + + + Sbjct: 516 AGNAIIATDLEGLITLFNPAAERMLGYTADEMVGKRTPAVFHLREEVAARAQEFSEELGE 575 Query: 387 YRSDR---------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + ++ + + E ++ G+ + Sbjct: 576 RLAPGFEVFIVKTKRGLPNEHEWTYVRKDGAR-FPVQLSVTELKDENNRASGYLGVATDI 634 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE----DIL 493 ++R + QL E GI + L+ NR + +++ P E + Sbjct: 635 SRQVQDRRNLMSMRDQLLKAAEVAELGIWTWDLVSDTLTWNRQMFEIYQVPYELNNAGLS 694 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + L + L L+ + + I ++ ++ Sbjct: 695 HRHWRNALHPEDEAATTAKLEAALAGE--GVYDPIYRIVRPSGEVRYVQAAAVVEFNDLG 752 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DI+E ++ + +L AK +A+ S KS+FLA +SHEIRTP+ AI+G + Sbjct: 753 KPILVLGVNRDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNL 812 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K R +Y + + S +L I+ND+LD SKIE+GK+ L EP SLD+ + Sbjct: 813 LKRTNL----EERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQ 868 Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIII 727 + ++ +K + + IP + D ++QI +N+ NA+ FT G +I + Sbjct: 869 DVGVIITANLGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITV 928 Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ VRDTG+G++ +L++ + F Q S R G GLGL + + +V Sbjct: 929 RLKSEEEDRLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLV 988 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 G+ S +G++ Sbjct: 989 RLMGGEIAAESEEGEGSVFRFSI 1011 Score = 114 bits (285), Expect = 8e-23, Method: Composition-based stats. Identities = 45/420 (10%), Positives = 101/420 (24%), Gaps = 49/420 (11%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSE 265 L Q S++ Y A L ++ PL Sbjct: 243 LIHTNSNKVFGFDLGRRFRWQDEFKTVQVESELFRSMSLYEAEDGAQLAASQEVPLQEGL 302 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----SLSAYFDEGEN 320 + + + Q + + + G+ Sbjct: 303 PERVLRLYITYPQEAAEKRVGQAVSNIMLALLGGMAVVGGFLYLYWLNMRQRQLVSSGQA 362 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V+ G + N + Y + I + + Sbjct: 363 RMAAIVESAQDAVLGMDLDGVVTDWNRGAERMFGYPRDEAIG------RFVQKLIVPGER 416 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED-- 437 + + R + ++ ++ N E + + Sbjct: 417 VAEETSILRMIEDGGPVRPFNTQRKCKDGRTVEVSVSVSPIRNADGEIVGAAKTIRDISR 476 Query: 438 --------------VDTRINKRKMEIEV--MQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ ++ R EI +IL + I + EG+I N A Sbjct: 477 QISIENQIRELNASLERQVEARTAEIRRYLALQQAILNNAGNAIIATDLEGLITLFNPAA 536 Query: 482 SKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEI------------LSLDLRQTLEK 527 ++ GY ++++ K P L + + + E+ + E Sbjct: 537 ERMLGYTADEMVGKRTPAVFHLREEVAARAQEFSEELGERLAPGFEVFIVKTKRGLPNEH 596 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K+ +++ + +L + Y DIS Q++ L + K + Sbjct: 597 EWTYVRKDGARFPVQLSVTELKDENNRASGYLGVATDISRQVQDRRNLMSMRDQLLKAAE 656 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 131/475 (27%), Gaps = 32/475 (6%) Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS--RNREFSGF--------- 178 + L++ Q + + +EG + L PI R E G+ Sbjct: 39 YTEVEALMEGQVAFRSEKITQRLEGLSHDARFLLFTPPIQGIVRATENDGYDVREDSSLS 98 Query: 179 ---RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 R + + P RL + EI + + + + P Sbjct: 99 LWRRRLNTIFSGYLVTHPEVTQVRLIGVADNGKEIVRVERIGQLPEIIADDELQPKAQRD 158 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + + + D+ +Y ++ P + FG L N Sbjct: 159 YFQEAIRIPPGSLYVSDLNLNREYDMVQ-----WPHVPTLRMATPVISSAGNTFGILVIN 213 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 SF + F + G F ++K Sbjct: 214 IDASFMLDDLTAEVPQGYRVYLTNQNGDFLIHTNSNKVFGFDLGR------RFRWQDEFK 267 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 +V +L +A + A + V L + T Sbjct: 268 TVQVESELFRSMSLYEAEDGAQLAASQEVPL--QEGLPERVLRLYITYPQEAAEKRVGQA 325 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + G ++ + ++ +I+E+ D + ++ +G++ Sbjct: 326 VSNIMLALLGGMAVVGGFLYLYWLNMRQRQLVSSGQARMAAIVESAQDAVLGMDLDGVVT 385 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 NR ++FGYP ++ + + + + ++ T K+ Sbjct: 386 DWNRGAERMFGYPRDEAIGRFVQKLIVPGERVAEETSILRMIEDGGP-VRPFNTQRKCKD 444 Query: 536 EKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + + + + + + + T+ DIS +N++ E++ ++ Sbjct: 445 GRTVEVSVSVSPIRNADGEIVGAAKTIRDISRQISIENQIRELNASLERQVEART 499 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 39/407 (9%), Positives = 107/407 (26%), Gaps = 48/407 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWY-GK 146 +D G + + + + G + IG + + I +++ Sbjct: 378 MDLDGVVTDWNRGAERMFGYPRDEAIGRFVQKLIVPGERVAEETSILRMIEDGGPVRPFN 437 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKF 204 T +G + V + ++ PI + + E G I ++N R L L+++ Sbjct: 438 TQRKCKDGRTVEVSVSVS--PIRNADGEIVGAAKTIRDISRQISIENQIRELNASLERQV 495 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-----------------MKNKVSSLTEYY 247 + + ++++ + L V T Sbjct: 496 EARTAEIRRYLALQQAILNNAGNAIIATDLEGLITLFNPAAERMLGYTADEMVGKRTPAV 555 Query: 248 AHKDDVLKTEKYPLLTS-EESSLPEQEDF----------------HTINLNQYTKKQYFG 290 H + + E P E F + ++ + Sbjct: 556 FHLREEVAARAQEFSEELGERLAPGFEVFIVKTKRGLPNEHEWTYVRKDGARFPVQLSVT 615 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYAN 345 L++ + + YL S + + + + + + + N Sbjct: 616 ELKDENNRASGYLGVATDISRQVQDRRNLMSMRDQLLKAAEVAELGIWTWDLVSDTLTWN 675 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + + ++ AG ++ A L + ++ Sbjct: 676 RQMFEIYQVPY--ELNNAGLSHRHWRNALHPEDEAATTAKLEAALAGEGVYDPIYRIVRP 733 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + E + + N + + G+ + + R ++++ Sbjct: 734 SGE-VRYVQAAAVVEFNDLGKPILVLGVNRDITEQREYEQRLREAKA 779 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 29/269 (10%), Positives = 71/269 (26%), Gaps = 29/269 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM------RLCDVSDILHIDPNNHIGDLLK---- 138 D G + + + +G A +M+G L + + + +G+ L Sbjct: 523 TDLEGLITLFNPAAERMLGYTADEMVGKRTPAVFHLREEVAARAQEFSEELGERLAPGFE 582 Query: 139 -------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 R + T +G P+ L+ + N SG+ G + Sbjct: 583 VFIVKTKRGLPNEHEWTYVRKDG--ARFPVQLSVTELKDENNRASGYLG--VATDISRQV 638 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHK 250 R + + E+ + D + ++ ++++ + H Sbjct: 639 QDRRNLMSMRDQLLKAAEVAELGIWTWDLVSDTLTWNRQMFEIYQVPYELNNAGLSHRHW 698 Query: 251 DDVLKTEKYPLLTSEESSLPEQE-------DFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + L E T++ + E + + N+ + L Sbjct: 699 RNALHPEDEAATTAKLEAALAGEGVYDPIYRIVRPSGEVRYVQAAAVVEFNDLGKPILVL 758 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + +++ D Sbjct: 759 GVNRDITEQREYEQRLREAKAMADNASKA 787 >gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1115 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 109/501 (21%), Positives = 202/501 (40%), Gaps = 18/501 (3%) Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E T++ + G + AN + L + + I + L+ ++S+ Sbjct: 272 EARLRATINTSVDGVLGFDRHGIIESANDALCELLGWDDAELIGQ--DVRVLMPNERISE 329 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 N + L + Q + + + + + Sbjct: 330 FNQYLEMRLNGIHPDKTSNGRDTTICQKDGR---LIPIRLAIGFVELGQESNFVAFISDL 386 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYPVEDILR 494 +R + Q S++ GIA ++ E ++ + A+ + GYP D + Sbjct: 387 RYRVEMERALRQSEAQFRSLISNIP-GIAYRCLDNEERPMVFISDAIESISGYPASDYVG 445 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 P + ++ ++ +E + +E + L + + Sbjct: 446 NPPKRYFHEHVHPDDIEETVAKVNGQHLFKVEYRIYNAKREIRWLLGYGTHAENTETGEK 505 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + DI+E K+ + L AK AE+ +S ++ FLA +SHEIRTP+ A+IGFS+++ + Sbjct: 506 WLDGFIMDITERKEMEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLD 565 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 F ++ I++S +L ++ND+LD +K++ GK SL E + + Sbjct: 566 DVF----EAEQRKHLTTINQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVV 621 Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S + L AN+K + + S A + ++Q+ N++ NAI FT GG + I Sbjct: 622 STLWLQANKKELYLNVSVAPEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGG-VNIKVGV 680 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + DTG+GMT +L FGQ S R GTGLG ++K +++ GK Sbjct: 681 KPSGCIEFAIIDTGIGMTKEQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGK 740 Query: 792 FYIFSTPAKGTLIEIIFPLYD 812 ST +G+ PL Sbjct: 741 ISATSTYGEGSCFSFTLPLAP 761 Score = 84.7 bits (208), Expect = 6e-14, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 63/141 (44%), Gaps = 4/141 (2%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + R+ + +L + + + DG+ +R GII S N A+ +L G+ +++ + V Sbjct: 262 KESTRRAKFNEARLRATINTSVDGVLGFDRHGIIESANDALCELLGWDDAELIGQDVRVL 321 Query: 501 LEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556 + S N YL L+ + + + T K+ +L+ +R+ I +L S + Sbjct: 322 MPNERISEFNQYLEMRLNGIHPDKTSNGRDTTICQKDGRLIPIRLAIGFVELGQESNFVA 381 Query: 557 TMHDISEWKQEKNKLSHAKKI 577 + D+ + + L ++ Sbjct: 382 FISDLRYRVEMERALRQSEAQ 402 Score = 38.9 bits (89), Expect = 3.6, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 74/251 (29%), Gaps = 17/251 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQNTWYG 145 D HG ++ ++ L + +G ++IG + + I N ++ + T G Sbjct: 290 DRHGIIESANDALCELLGWDDAELIGQDVRVLMPNERISEFNQYLEMRLNGIHPDKTSNG 349 Query: 146 KTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + T +G + + + + + + + F F + R + ++ + +F Sbjct: 350 RDTTICQKDGRLIPIRLAIGFVEL-GQESNFVAF-----ISDLRYRVEMERALRQSEAQF 403 Query: 205 SHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEK 258 L G + E+ I + V + + Y H+ E+ Sbjct: 404 RSLISNIPGIAYRCLDNEERPMVFISDAIESISGYPASDYVGNPPKRYFHEHVHPDDIEE 463 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + + Y +N + ++ Sbjct: 464 TVAKVNGQHLFKVEYRIYNAKREIRWLLGYGTHAENTETGEKWLDGFIMDITERKEMEQS 523 Query: 319 ENLTPETVDKC 329 + + ++ Sbjct: 524 LLIAKDKAEQA 534 >gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 578 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 25/370 (6%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 R E++ +L +++E G+ +I+ G I NRA +K F +LR+ + Sbjct: 226 EMTRTQEMQRDRLLTVIENIGSGLILIDGRGFINLVNRAYAKQFHTQPNHLLRRLYHDAF 285 Query: 502 EQNTPSVMNHYLTEILSLD---LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 E + + + R + + + + L Sbjct: 286 EHEEIIQLVEEIFMTETKKCKLFRLPINIERRYFEVDGVPI-----MGPDDEWKGIVLVF 340 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++E K+ + + DF+A VSHE++TP+T+I GF+E + + Sbjct: 341 HDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGALD-- 384 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +E+ + I + + +V DLLD+SKIE L E + + E +L+Q Sbjct: 385 DREALLEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHK 444 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A+EK I + + + D+ +KQ+ LN+ +NA+ +TP G + IS + + Sbjct: 445 ASEKDIRFELNIPKDPLYVQGDVYRLKQVFLNLANNALTYTPEHGTVTISAKLAEED-IQ 503 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V DTG+G+ E+ + + F ++ + GTGLGL + K +++A+ GK + S Sbjct: 504 IEVADTGIGIEKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSEQ 563 Query: 799 AKGTLIEIIF 808 +GT+ + Sbjct: 564 GQGTIFIVAL 573 >gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] Length = 1141 Score = 356 bits (913), Expect = 1e-95, Method: Composition-based stats. Identities = 106/638 (16%), Positives = 225/638 (35%), Gaps = 52/638 (8%) Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + + + PP RM+ + YP E++L Sbjct: 110 LASLGYVDRLTPAELPPYLSRMQQERPGFRLHPDSPRAGYTAIRYLYPPTPRNETALGLD 169 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 T N + G K ++ P++ + Sbjct: 170 MYTETTRRNAMDQALDSGAPAVTGKVVPLLQNNSKDPNIFLMYWPVYRKGAA------QG 223 Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 L + + D + G ++ D N P L Sbjct: 224 SVEARRAALQGWVFATFRMG-----DLMLGIFGAGAPQLNLRIYDGNEATPASLMYDTGR 278 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN--------------------- 431 + + + + ++ + Sbjct: 279 QNTGRYHVQRHYRLGGHPWLLDIASAPELDRSVASTRYLWVMGLGLLASLLLSVFIGSIL 338 Query: 432 -GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 E + + + +++ + + + ++++G I +N A + FGY E Sbjct: 339 FARRREAAISDASAAAAKKREEHFRAVIRSAPNAMLAVDQQGFITMSNPAAVRYFGYSPE 398 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL 548 ++ K + L + + + + + K+ + + + I + + Sbjct: 399 ELQGKTIEMLLPERFRKHHPMLRQAFKADSKPRQMGEGRELFALCKDGREIPVEIGLSTM 458 Query: 549 PFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DISE K + +L + + + +K++FLA +SHE+RTPL +I+ Sbjct: 459 LTEEGVQTVCSIIDISERKLSELRLREQAEQISRANRYKTEFLATMSHELRTPLNSILIL 518 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++ + R G L + +E+A I+RSG +L ++ND+LD+SKIE+G+M L+ E V +++ Sbjct: 519 ADQLAENRQGNLT-AKQVEHATIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVND 577 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQI 725 ++ A +++ +T+ ++ +L D + QI N+LSNA FT G + Sbjct: 578 LITTLRQNFLPVAENRQLTFQTTKEDSAGDVLITDATRLFQILKNLLSNAFKFTDHGS-V 636 Query: 726 IISTTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + + + V DTG GM + +L++ + F Q+ + + G+G Sbjct: 637 HLRVYQPQSVPPGMDSLPQHTLAMAVTDTGCGMPSDKLDRIFEAFEQLEQGSKRQFGGSG 696 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 LGL +++ + G + S G+ + P++ Sbjct: 697 LGLSISRQLAHLLGGTIDVRSELGLGSTFVLYLPVHPA 734 Score = 45.0 bits (105), Expect = 0.049, Method: Composition-based stats. Identities = 22/260 (8%), Positives = 64/260 (24%), Gaps = 22/260 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144 +D G++ + + G ++ G + + + + K + Sbjct: 376 VDQQGFITMSNPAAVRYFGYSPEELQGKTIEMLLPERFRKHHPMLRQAFKADSKPRQMGE 435 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G +P+++ + + G + + + ++ Sbjct: 436 GRELFALCKDGR--EIPVEIGLSTMLTE----EGVQTVCSIIDISERKLSELRLREQAEQ 489 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 S + K + + N + L + A T K Sbjct: 490 ISRANRYKTEFLATMSHELRT-----------PLNSILILADQLAENRQGNLTAKQVEHA 538 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + ++ +K + N K L + + + Sbjct: 539 TIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQNFLPVAENRQLTFQ 598 Query: 324 ETVDKCPIPFFVYSHGNLFY 343 T + + LF Sbjct: 599 TTKEDSAGDVLITDATRLFQ 618 >gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1559 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 103/665 (15%), Positives = 210/665 (31%), Gaps = 49/665 (7%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 +H+ + A + + + L + + I + Sbjct: 753 LHLAELRRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHA 812 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQED-----------FHTINLNQYTKKQYFGTL 292 + E + E +P + +++ Sbjct: 813 PYAEFAAQFKIIGEDGREVAMETRPMPTVLREGRNLVTNEIELERPDGSRFFANFSISPT 872 Query: 293 QNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347 + ++ + E + I G + NP+ Sbjct: 873 FGPDGQISGAIAVFQDVTAERQARVALRATEERYRAVFQQASIGIMECDLEGRILRCNPA 932 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L Y + G L P+ N L R DR + Sbjct: 933 LARLVGYAEAEL---CGMNWRDLCPPEEVGENERVAQRLLRGDRPSFTGE---RRYRRKD 986 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + + + ++ + + + I Sbjct: 987 GSVGWIDIFATSIFDDSGRPTYGLAMLVDITERKRAEAELRETEERFRVAADNAPVLLWI 1046 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + + N+ + G +E + + + + Sbjct: 1047 ADTDKQRTWFNQPWLEFVGRTLEQEVGLGWLDNVHPEDRDHVLEVFDTAFERRGP--FRL 1104 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN--------------K 570 + + + + Y + DI++ + + + Sbjct: 1105 EYRIRRHDGEYRWMLVHGVPRQQDEEFVGYIGSCVDITDRRLAEEAIHASRNAERAHRVE 1164 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ A S K DFLA +SHE+RTPL+ ++ + + P P I Sbjct: 1165 LERARDEAVAASRAKDDFLAALSHELRTPLSPVLLLA---SDAAADPQLPPSVRADFETI 1221 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +S L +++DLLD+++I K++L V A+ +A+ V+ KRI + Sbjct: 1222 RKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPVALRDALINVRAEFEAKRIGLVLDL 1281 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMT 749 + + AD ++Q+ N+L NA+ FTP+GG++ I++ ++L V DTG+GMT Sbjct: 1282 SPEPQFVRADPVRLQQVIWNVLKNAVKFTPAGGRVTITSRIDHERRRLVLAVADTGIGMT 1341 Query: 750 NYELEKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805 E+E+A + F Q + R G GLGL +++ +V+ + G S +G + Sbjct: 1342 AGEIERAFEAFAQGDHAGSGGSHRFGGLGLGLAISRRVVELHGGSITAQSPGRGRGAVFR 1401 Query: 806 IIFPL 810 I PL Sbjct: 1402 IELPL 1406 Score = 260 bits (665), Expect = 6e-67, Method: Composition-based stats. Identities = 108/605 (17%), Positives = 203/605 (33%), Gaps = 76/605 (12%) Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + G + ++ S P + L+ Sbjct: 2 ADASDKTAGQSGPTCAADPFRGGGEAGAILRAIDWPSKPIGPVDTWPQSLRTALSLCLAS 61 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + PI ++ L++ N ++ + K + S + P++ +++ + Sbjct: 62 RHPICI-IWGPDRLYFYNDAYAPILGEKHPWALGE----SYITVWPEIWESSIRPILEQV 116 Query: 388 RSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 L ++ + F + E + +R+ Sbjct: 117 EQTGEASWCDDLLLVLRRHGFNEECYFAFSFAPTRVEDGSVGGVFTAITETTLQVVGERR 176 Query: 447 MEIEVMQLCSILEATSDG-------------------------IAIINREGIILSTNRAV 481 + L + D I+ G Sbjct: 177 L----HTLRDLGARAPDARSAEEACRIAADVLAQNRYDVPFALFYAIDETGQ-------A 225 Query: 482 SKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLD------LRQTLEKITLGST 533 +KL P + P V L+Q P H+ I S L + L + G Sbjct: 226 AKLVPGPGIEPGARGTPARVALDQEDPEDFWHFGEVIRSGKPRVHSQLPEDLGPLPKGPW 285 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK------------------------N 569 E ++ + I + S Y L + S + Sbjct: 286 PERPHTAVVLPIARPGESVPYGLLVCGASARRPLDPDYQSFFSLIASQVATAVANALAFA 345 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + + K DF + VSHE RTPLT I+G E + ++ E Sbjct: 346 EQRRRAESLAALDRAKIDFFSNVSHEFRTPLTLILGPLEELLSEPARSALPADAREQLKV 405 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + R+ +L +VN LLD S++E+G+++ HFEPV L E ++ +++ + + + ++ Sbjct: 406 VHRNSLRLLKLVNMLLDFSRLEAGRIDAHFEPVDLPEFTADLVAVFRSAIEKAGLRLQVD 465 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 L D ++I N+LSNA FT G +I +S LRVRDTG+G+ Sbjct: 466 CPPAPFPALVDREMWEKIVFNLLSNAFKFTRHG-EIEVSLHCL-GPTFELRVRDTGLGIP 523 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K F ++ ++ EGTG+GL L + +V + G + S GT++ + P Sbjct: 524 PESQSEVFKRFHRLKHAHSRTHEGTGIGLSLVQELVRLHGGTVSLTSEVNVGTIVSVTIP 583 Query: 810 LYDTS 814 ++ + Sbjct: 584 VHRPA 588 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 50/403 (12%), Positives = 111/403 (27%), Gaps = 17/403 (4%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 N D R + + + + + V K D+ P L + +L E Sbjct: 644 DNADMRDYVMRLLREHYDIAAVADGQAALALVRHWKPDLVLADIMMPGLDGFELLQALRE 703 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 A + + + E S E + + + S+ L Sbjct: 704 SPATQQLPVILLSAR---AGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHLAEL-- 758 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV--DDIEI 362 A E + V P + V + G + + NP + + + Sbjct: 759 --RRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHAPYAE 816 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 ++ +P+ + + + + + + A F Sbjct: 817 FAAQFKIIGEDGREVAMETRPMPTVLREGRNL-VTNEIELERPDGSRFFA-NFSISPTFG 874 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + R + + + ++ + S GI + EG IL N A++ Sbjct: 875 PDGQISGAIAVFQDVTAERQARVALRATEERYRAVFQQASIGIMECDLEGRILRCNPALA 934 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L GY ++ + +L D K+ + + Sbjct: 935 RLVGYAEAELCGMNWRDLCPPEEVGENERVAQRLLRGDRPS-FTGERRYRRKDGSVGWID 993 Query: 543 IIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE 581 I + S + DI+E K+ + +L ++ Sbjct: 994 IFATSIFDDSGRPTYGLAMLVDITERKRAEAELRETEERFRVA 1036 Score = 106 bits (265), Expect = 2e-20, Method: Composition-based stats. Identities = 34/387 (8%), Positives = 99/387 (25%), Gaps = 34/387 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------ 139 + +DA G + + + + + + I + ++ Sbjct: 784 IYTVDAEGRITFYNPRAAEIWQARPT--LHAPYAEFAAQFKIIGEDGREVAMETRPMPTV 841 Query: 140 ----QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 +N + L +G+ + + P + + + SG + + R Sbjct: 842 LREGRNLVTNEIELERPDGS--RFFANFSISPTFGPDGQISGA--IAVFQDVTAERQARV 897 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDV 253 + ++++ + + + I L + ++ + + Sbjct: 898 ALRATEERYRAVFQQASIGIMECDLEGRILRCNPALARLVGYAEAELCGMNWRDLCPPEE 957 Query: 254 L---KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----R 306 + + LL + S + + + + + ++ ++S L+ Sbjct: 958 VGENERVAQRLLRGDRPSFTGERRYRRKDGSVGWIDIFATSIFDDSGRPTYGLAMLVDIT 1017 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365 A E E D P+ ++ + N +L ++ G Sbjct: 1018 ERKRAEAELRETEERFRVAADNAPVLLWIADTDKQRTWFNQPWLEFVGRTLEQEV-GLGW 1076 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + + R + + E + Q Sbjct: 1077 LDNVHPEDRDHVLEVFDTAFERRG-----PFRLEYRIRRHDGEYRWMLVHG--VPRQQDE 1129 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM 452 E + G + D R+ + + Sbjct: 1130 EFVGYIGSCVDITDRRLAEEAIHASRN 1156 Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 41/385 (10%), Positives = 108/385 (28%), Gaps = 30/385 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147 D G + + L + +G ++ GM D+ + N + L R + ++ G+ Sbjct: 921 DLEGRILRCNPALARLVGYAEAELCGMNWRDLCPPEEVGENERVAQRLLRGDRPSFTGER 980 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ ID+ A I+ + + G ++ A + +++F Sbjct: 981 RYRRKDGSVG--WIDIFATSIFDDSGRPT--YGLAMLVDITERKRAEAELRETEERFRVA 1036 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + P ++ +V H +D + Sbjct: 1037 ADNAPVLLWIADTDKQRTWFNQPWLEFVGRTLEQEVGLGWLDNVHPEDRDHVLEVFDTAF 1096 Query: 265 EES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + + G + +E Y+ + +E + + Sbjct: 1097 ERRGPFRLEYRIRRHDGEYRW-MLVHGVPRQQDEEFVGYIGSCVDITDRRLAEEAIHASR 1155 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + ++ DD L+ L + + + Sbjct: 1156 N----------AERAHRVELERARDEAVAASRAKDDF-----LAALSHELRTPLSPVLLL 1200 Query: 384 VMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVD 439 +D A TI+ + E + + + + + E + + Sbjct: 1201 ASDAAADPQLPPSVRADFETIRKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPVALR 1260 Query: 440 TRINKRKMEIEVMQLCSILEATSDG 464 + + E E ++ +L+ + + Sbjct: 1261 DALINVRAEFEAKRIGLVLDLSPEP 1285 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 44/397 (11%), Positives = 90/397 (22%), Gaps = 27/397 (6%) Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 RL S HE S+ +E + + S+T Sbjct: 536 RLKHAHSRTHEGTGIGLSLVQELVRLHGGTVSLTSEVNVGTIVSVTIPVHRPAGTPANPG 595 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 P S E+ + + ++ + + D Sbjct: 596 APRSASGVEPRAFVEE------SLRWIQPTDAVMKAPAVPRADRPPLARVLLADDNADMR 649 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + I L + + K V + GL L ++ Sbjct: 650 DYVMRLLREHYDIAAVADGQAAL-----ALVRHWKPDLVLADIMMPGLDGFELLQALRES 704 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + + I SAR + + + Sbjct: 705 PATQQL-------PVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHLAE 757 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-------ED 491 R + K+ +L ++ GI ++ EG I N ++++ E Sbjct: 758 LRRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHAPYAEF 817 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + T + T E + I P Sbjct: 818 AAQFKIIGEDGREVAMETRPMPTVLREGRNLVTNEIELERPDGSRFFANFSISPTFGPDG 877 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 D++ +Q + L ++ S Sbjct: 878 QISGAIAVFQDVTAERQARVALRATEERYRAVFQQAS 914 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 22/262 (8%), Positives = 52/262 (19%), Gaps = 13/262 (4%) Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137 + W D L ++ +G +G V + I + + Sbjct: 60 ASRHPICIIWGPD---RLYFYNDAYAPILGEKHPWALGESYITVWPEIWESSIRPILEQV 116 Query: 138 K--RQNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + + +W + G N + P + G F + + Sbjct: 117 EQTGEASWCDDLLLVLRRHGFNEECYFAFSFAPTRVEDGSVGGV--FTAITETTLQVVGE 174 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 L + + + + + + P + + Sbjct: 175 RRLHTLRDLGARAPDARSAEEACRIAADVLAQNRYDVPFALFYAIDETGQAAKLVPGPGI 234 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + EDF + K + P + Sbjct: 235 EPGARGTPARVALDQEDPEDFWHFGEVIRSGKPRVHSQLPEDLGPLPKGPWPERPHTAVV 294 Query: 315 FDEGENLTPETVDKCPIPFFVY 336 + P V Sbjct: 295 LPIARPG-----ESVPYGLLVC 311 >gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Pseudoalteromonas tunicata D2] Length = 901 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 128/668 (19%), Positives = 235/668 (35%), Gaps = 48/668 (7%) Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238 RG G++ + + + + ++ + + D+F Q P R K Sbjct: 111 RGLGLIRLVKPQDQTAFIEMAKAER----PDNTFNIRQLAPHNDDLFIIQYIEPESRNKQ 166 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 V A + + + + F +L + Sbjct: 167 AVGLDIGSEAMRRNAALNAAEYDSPRLTGPITLVQANQKTQQGFLILSPVFNSLTPPTTS 226 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-SV 357 + DE + V + + F ++ Sbjct: 227 KQRVANVVAWSYSPILIDEVLSD----VSSLKADIILSISDQTTQSPQQFYTFGDMAFAL 282 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 ++ + L +L+ + + A A + + F Sbjct: 283 NEHRSVHTIDLLGRQWQLTLTATPEFLNELNLAPPYQAFGAVMTITF----TIMLALFSG 338 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-QLCS------------ILEATSDG 464 + + + + + + +++E + + ILEA+S Sbjct: 339 QLILMRQSQMKAYELELAQAREKALTEANLKLEEQVEQRASEIANINLLQKRILEASSYA 398 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSL 519 I + +GII N A K+ GY V +++ K ++ L + Sbjct: 399 IITTDIKGIITLINPAGEKMLGYSVNELVGKLNPGIFHLPDEIMTRAQALSDELGTQIEP 458 Query: 520 DLRQTLEKITLGS---------TKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQ 566 + K +G KE K +++ I L + D++E + Sbjct: 459 GFEVFVAKARIGQQDINRWTYVHKEGKQFQVKLSINSLYNEFNELVGFLGIASDLTEQLK 518 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L+HAK AEK KS+FLA +SHEIRTP+ + G +++K + G Sbjct: 519 REQALAHAKDRAEKAVKVKSEFLANMSHEIRTPMNGLFGVMQLLKQENLSSDG----KNL 574 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + S + I+ND+LD SKIE+GK+ L L E + S + + A K+I + Sbjct: 575 LDKALYSAKNLTVIINDILDFSKIEAGKLTLELTNFKLSELIEHINSDLSVNAFNKQIDL 634 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 D ++QI LNI+SNAI FT +GG ++ ++ + + V DTG+ Sbjct: 635 TFEINVKHDFWFGDPIRIRQILLNIISNAIKFTNTGGVKVLVNALPTSNGLQISVIDTGI 694 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +E+ F Q S + GTGLGL ++++++D G+ + S KGT I Sbjct: 695 GIAPDAIERLFNRFEQADKSTTRKYGGTGLGLSISQSLIDLMQGEISVTSEENKGTSFSI 754 Query: 807 IFPLYDTS 814 + PL Sbjct: 755 MIPLVQAH 762 Score = 41.6 bits (96), Expect = 0.60, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 40/154 (25%), Gaps = 21/154 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNH 132 D G + I+ K +G +++G + + I+P Sbjct: 402 TDIKGIITLINPAGEKMLGYSVNELVGKLNPGIFHLPDEIMTRAQALSDELGTQIEPGFE 461 Query: 133 IGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + R + T EG + L+ +Y+ E GF G I Sbjct: 462 VFVAKARIGQQDINRWTYVHKEGKQFQ--VKLSINSLYNEFNELVGFLG--IASDLTEQL 517 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + ++K + + Sbjct: 518 KREQALAHAKDRAEKAVKVKSEFLANMSHEIRTP 551 >gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1310 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 107/678 (15%), Positives = 225/678 (33%), Gaps = 68/678 (10%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKN 238 + A + + + E+ + D P + Sbjct: 195 REVALRERAEAELRDRSRLLNLAEEVGQFGHWYIDFVTDTRRWSDEVYRILGLPPQQEPP 254 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 V Y D L + + Sbjct: 255 TVELSRASYHPDDLPLLARMAERARRTGEGFSVEARVVRRDGGMRHVFVRASVECGADGR 314 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFVYSHGNL-FYANPSFLLLTK 353 L + + + E +D + ++ + +P++ Sbjct: 315 PAGLLGVVQDITDAKREEAELRSNRELLDLTVQATRDGIWDWNLETGGIWFSPTWKEQLG 374 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 Y+ + + L+ ++ + + I + + R +++ + Sbjct: 375 YRDDELENSLEMWAGLIFE----EDRFTALETVRAYNAGLIPNFEAVQRFRHKRGHTVYI 430 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + G + ++ + ++ + L +EA +G+A + + Sbjct: 431 LSRAIHIRDAAGRVVRMVGAHTDITREKLTEEELRLAKQTLDDAIEAVPEGLAYFDADDR 490 Query: 474 ILSTNRAVSKLFGYPVEDIL-RKPFTVFLE--------------QNTPSVMNHYLTEILS 518 ++ N + +PF L + + + L + + Sbjct: 491 LILCNERYREAHPLTAPLFTPGRPFEEILRAAVANGEFAGNPDGPSDEAWIQAELAQHRN 550 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA---- 574 E+ + + + ++ + S T DI+E K+ + +L Sbjct: 551 PGAP--FEREL----PDGRWI---VVAENRTSSGSLVCTRTDITERKRFEAELQRQAADM 601 Query: 575 -----------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + AE + KS+FLA +SHEIRTP+ I+G +E++ + Sbjct: 602 CALAEGLDAAREEADALRARAEAATQAKSEFLAAMSHEIRTPMNGIMGMTELLFDTPL-- 659 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 ++A I S N +L I+ND+LDISK+E+G++ + P + V + L+ Sbjct: 660 --TEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDPADLVEGVVELLTP 717 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE 735 A+EK I I + R +L D ++QI +N++ NA+ FT G + + ++ Sbjct: 718 RAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGSVAVELEAREATDA 777 Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++LR V DTG+G+ + F Q+ S + GTGLGL + + + + G Sbjct: 778 HLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAICRQLSELMGGSIA 837 Query: 794 IFSTPAKGTLIEIIFPLY 811 + S G+ + PL Sbjct: 838 VESRLGSGSRFLVDLPLA 855 >gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 874 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 109/471 (23%), Positives = 208/471 (44%), Gaps = 24/471 (5%) Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + +++L + L + V L + H I ++ LA+T F Sbjct: 156 LALLAMSASILVSWLLGSYLTRQLVHLREAATAIGHGHFN-HRIPVQGQDELALTATAFN 214 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + Q + R+ K + +I+ DG+ ++ G +LS N Sbjct: 215 RMSGELDKTYQRLKKSLYTSNRMAKLEA--------TIMHTVMDGLITMDSSGKVLSFNH 266 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEE 536 A +FGY +++ + T+ + + S + Y+ L + + + K+ Sbjct: 267 AAEGIFGYAAAEVVGEQITMLMPEPYRSQHDDYVQRYLQGAAPRVIGSAGRHVTAQRKDG 326 Query: 537 KLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 LL +R+ + ++ + + D+SE QE+ L AK+ AE + KS FLA +SH Sbjct: 327 ALLPIRLSVNEMVFEGERLFVGLVADVSERLQEERALIEAKEQAEAANMAKSRFLAVMSH 386 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTP+ I+G ++ ++R + + E+ S +L ++ND+LD SKIE+G Sbjct: 387 EVRTPMNGILGMLGLLNDRRL----DGQQQEWLATAQESAESMLTLLNDILDFSKIEAGH 442 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 + L S ++ + L A K I + N+P + D ++Q+ +N++S Sbjct: 443 LELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWVQGDPGRLRQVLMNLVS 502 Query: 714 NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N I FT GG + + + E + V+D+G+G+ +L + +PF Q+ S Sbjct: 503 NGIKFTHQGG-VTMRVAQQAKREDSLLLQFEVQDSGIGIPPQQLTQLFQPFNQLDPSYSR 561 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + G+GLGL + + +VD G+ + S P+ G+ P D + Sbjct: 562 KYGGSGLGLAICRHLVDLMGGEIRLESPPSGGSRFTFTARFGYAHAPQDEV 612 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 28/250 (11%), Positives = 67/250 (26%), Gaps = 17/250 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147 +D+ G + + G A +++G ++ + ++++ L+ Sbjct: 255 MDSSGKVLSFNHAAEGIFGYAAAEVVGEQITMLMPEPYRSQHDDYVQRYLQGAAP----- 309 Query: 148 TLWPIEGTNLYV----PIDLAALPIYSRNRE--FSGFRGF-GIVHVNRVDNDPRALGKRL 200 + G+ D A LPI E F G R F G+V Sbjct: 310 ---RVIGSAGRHVTAQRKDGALLPIRLSVNEMVFEGERLFVGLVADVSERLQEERALIEA 366 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + K +V + + ++ + E Sbjct: 367 KEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRRLDGQQQEWLATAQESAESML 426 Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L ++ + E H + + ++ +Q + + A Sbjct: 427 TLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWV 486 Query: 320 NLTPETVDKC 329 P + + Sbjct: 487 QGDPGRLRQV 496 >gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 848 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 110/414 (26%), Positives = 198/414 (47%), Gaps = 14/414 (3%) Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + +E E + +R + + +++++ SD I + +R Sbjct: 194 RHVDLRAEAERRFSELEAVRGAVERESAGRLVAERAFQQVQQEYKTLMDSASDLILVHDR 253 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKIT 529 + I N V L G P E L + V + + V N +L ++L ++ Sbjct: 254 DLRIRYVNPVVESLAGQPPEHYLGQGIEVIIPEREVAGVFNSHLRQVLQSGKDSSISFQL 313 Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + R+ + + DI+ +K+ +++L AK+ AE+ + KS+ Sbjct: 314 DSVRHK-RHMQARLTPVQDAAGSMGSVLAVVRDITRFKRLEDRLRQAKREAEESNRAKSE 372 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL A++G +E + F R EY I S + +L I++D+LD+ Sbjct: 373 FLANMSHEIRTPLNAVLGLAERLS---FITEPRER-DEYVRMIKHSAHALLAIIDDILDL 428 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706 SKIE+GK+++H + L + + +S + A EK + + S N +P +LAD Q Sbjct: 429 SKIEAGKLDVHEQEFELAALLEKVVSPYRYQAQEKGLELAVSVGNAVPAWMLADPDKFSQ 488 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762 + N++SNAI FT G + IS T+ + + +++ V DTG+G+ + F Q Sbjct: 489 VLTNLVSNAIKFTEEGS-VEISVTNDNRDSRDMGLLVCVHDTGLGIPWDMQARLFNSFSQ 547 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +S GTGLGL ++K +V+ G+ ++ S P KG+ P+ S P Sbjct: 548 LDSSYSKSFGGTGLGLAISKRLVEMLGGRIWVESMPGKGSSFSFTLPIASVSKP 601 Score = 40.8 bits (94), Expect = 0.90, Method: Composition-based stats. Identities = 9/138 (6%), Positives = 36/138 (26%), Gaps = 7/138 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKT 147 D ++ ++ + G +G + + + N+H+ +L+ + Sbjct: 252 DRDLRIRYVNPVVESLAGQPPEHYLGQGIEVIIPEREVAGVFNSHLRQVLQSGK---DSS 308 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + ++ + P+ +V ++ ++ Sbjct: 309 ISFQLDSVRHKRHMQARLTPVQDAAGSMGSV--LAVVRDITRFKRLEDRLRQAKREAEES 366 Query: 208 HEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 367 NRAKSEFLANMSHEIRTP 384 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 111/679 (16%), Positives = 241/679 (35%), Gaps = 77/679 (11%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 IV + + ++F L E + + S +R + S Sbjct: 525 AIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTELCQIVRNDSSWS 584 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 SL + ++ + + + + + + ++ Sbjct: 585 SLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERIRAVKREMG---- 640 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360 + A E ++ + + ++ + L Sbjct: 641 -----DRQQAKAGLTRSELRLQLALEAGQMGIWDWNLLTNQIIWSEEHERLFGLAP---- 691 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 G + + ++ L + + ++ + I W+ + + Sbjct: 692 GTFDGTDKMFYSYLHPEDCESLIAQLNLARQQQTDY-SQYYRIVWSNGSIHWIESKGKFF 750 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEV----------------------------- 451 N+ E + G + + + ++ E Sbjct: 751 YNETGEPVRILGTVRDITACKQAEEALQNEKNNLERRVTERTTELQEVNNCMQSELEEHK 810 Query: 452 ----------MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + IL+ D I ++R I N+ K+FGY E+ + +P V L Sbjct: 811 RIQEALQISQARFAGILDIAEDAIISLDRHQRITLFNQGAEKIFGYSAEEAIGQPLDVLL 870 Query: 502 EQNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKL--PFSSCYSL 556 V Y+ + +R + G K+ I KL +++ Sbjct: 871 PLRFVQVHQQYVNDFGQSPIRSRRMGERREISGRRKDGTEFPAEASISKLNLDKEVAFTV 930 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI++ KQ + K +F++ VSHE+RTPLT+I G ++ + Sbjct: 931 FLQDITDRKQIE--------------RMKDEFISIVSHELRTPLTSIHGSLGMLASGLLK 976 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + S + ++ ++ND+LDI +IESG++ + + ++++ ++EA+++VQ Sbjct: 977 A-DSEEGKRMLYIAVDSTDRLVRLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQ 1035 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 AN+ + + S ++ + AD + Q +N+LSNAI F+ +G + ++ Sbjct: 1036 ALANK--VEVTLSVSSLSISLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDR-H 1092 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V+D G G+ +LE + F Q+ +S EGTGLGL + +++V + G ++ S Sbjct: 1093 LLFIVKDEGRGIPTEKLESIFERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVES 1152 Query: 797 TPAKGTLIEIIFPLYDTSH 815 +G++ + P+ D Sbjct: 1153 VLGEGSIFYFMIPIRDCEQ 1171 Score = 62.0 bits (149), Expect = 5e-07, Method: Composition-based stats. Identities = 60/511 (11%), Positives = 127/511 (24%), Gaps = 54/511 (10%) Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 T G A + R+ + + + L + + P + Sbjct: 313 TFGLSAGSELARRIERTLKVEQPLSQDRVRQLREWVRLLREEIERSHSISELSVTPTEPD 372 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 P + D P L D+ + + + E Sbjct: 373 PTPSATEA--------------TTADERPLLLIVDRDRSLAKKLIAEATTWGFDLEVATN 418 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY---PLLTSEESSLPEQEDFHTINLN 281 + L+ + V + + L E++D T Sbjct: 419 LTIARNKIGLKSPDLVLLEPAIFPTAAESLTLLAELKKHAPPIPAIIFTERDDLTTRLEV 478 Query: 282 QYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + F + L + + + V P + Sbjct: 479 ARLGEHTFLPKSVPPSQILDAINQVLHQVDREKARVMVVDDDPKMLAIVRSLLEP---WG 535 Query: 338 HGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + A+P F L + S D + + ++ + + + R+D + + Sbjct: 536 LKIIALADPRQFWELLETTSPDLL---------ILDIEMPQISGTELCQIVRNDSSWSSL 586 Query: 397 SARLHTIQWNRENSLAM------------TFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 T + E+ + P ++ E D + K Sbjct: 587 PILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERIRAVKREMGDRQQAK 646 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLE 502 + ++L LEA GI N + + +LFG K F +L Sbjct: 647 AGLTRSELRLQLALEAGQMGIWDWNLLTNQIIWSEEHERLFGLAPGTFDGTDKMFYSYLH 706 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTM 558 + L L+ + + + + + T+ Sbjct: 707 PEDCESLIAQLN--LARQQQTDYSQYYRIVWSNGSIHWIESKGKFFYNETGEPVRILGTV 764 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 DI+ KQ + L + K E+ + ++ L Sbjct: 765 RDITACKQAEEALQNEKNNLERRVTERTTEL 795 >gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 591 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 175/364 (48%), Gaps = 23/364 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L +++E G+ +I+ G I NR ++F + L K + +E Sbjct: 241 EMQQDRLGALIENMGSGLILIDSRGYINLMNRPYKEVFNVNPSEYLYKLYYEVIEH---K 297 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + + EI + ++ +++ + E + + + L HDI+E K Sbjct: 298 GITEMVEEIFMTE-QKVKKQLIIPVNIERRYFEVYGVPIIGTNDEWKGILLVFHDITELK 356 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE++TP+T+I GFSE + + + Sbjct: 357 KLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAM--EDKQALND 400 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + I + + + ++ DLLD+SKIE +L + + L + + + +++++ A EK I+ Sbjct: 401 FLSIILKESDRLQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIV 460 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + I D+ +KQ+ +NI+SNAI +TP+ G I IS T V+ +RDTG Sbjct: 461 FKYQRDEKPVYIEGDIHRLKQVFINIISNAISYTPNQGVIYISAAKT-GSTVLTEIRDTG 519 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ E+ + + F ++ ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 520 IGIEASEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFI 579 Query: 806 IIFP 809 I P Sbjct: 580 IELP 583 >gi|239905559|ref|YP_002952298.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 2025 Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 111/720 (15%), Positives = 226/720 (31%), Gaps = 39/720 (5%) Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 D H + RQ + L + + Sbjct: 1178 SWLLSVHPDDRDRAAHDVAEMARQEAPLAVEYRLNTHDGRERWLLSL-GELQRDMHG--T 1234 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---------GHSSVEKEKYDIFSQ 227 G G+V + ++ L E + Y + Sbjct: 1235 GTAYLGLVLDITERKRLERELHENEGRYRSLFESMNEGLCLLEMVRDPDGQPVDYRVLDV 1294 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + ++ ++ + + + + + Sbjct: 1295 NPAYGRILGVAPDQAVGRLVREIFNLKQAPNLDVYVPLLETRQPATFESMLPELGKHFRV 1354 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346 LQ + + E P+P ++ HG + N Sbjct: 1355 SAFALQGERFVAMFQDVTALWE-ARQAEERSALRFRELFGFSPLPMGYMDQHGRILDLNR 1413 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTI 403 F L Y D + P + R+D I + + + Sbjct: 1414 RFTELFGYTLEDIPTLDDWREKAYPDPAYRREVIAQWDAALDNRRADTREIP--SAEYRV 1471 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + + + + + + QL +E Sbjct: 1472 TCKDGRIRDVLITGMTTEHGL------LACFVDITERKRFETHLAEREEQLRLFVEHAPA 1525 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 IA+ +R+ L+ +R + +L + + + + L+ + + Sbjct: 1526 AIAMFDRDMTYLAVSRRWIDDYKLDERAVLGRSHYEIFPEIPQRWKRIH-QQCLAGAIER 1584 Query: 524 TLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + +S I D++ KQ + + AK AE Sbjct: 1585 ADSDPFVRLDGNTQFVSWEIRPWLTPEGAIGGIVCFSEDVTLRKQAETAMLEAKNAAEAA 1644 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA +SHEIRTPL ++G +++ + + EYA R+GN + ++ Sbjct: 1645 NRAKSEFLANMSHEIRTPLNGLLGMLQLLHSTTL----DAEQEEYAQMAIRAGNRLTRLL 1700 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 +D+LD+S+IE+G++ + P L V + EKR+ + +P ++ D Sbjct: 1701 SDILDLSRIEAGRLPIVAAPFRLANVVQALRETFAPFCKEKRLQLVFETEAALPEWLVGD 1760 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEK 755 ++QI N++ NA+ F+ + G ++++ + ++ V D G+G+ + +L+ Sbjct: 1761 ELRIRQILFNLVGNALKFS-TNGDVLVTMSRLPGVAAKHARILFTVADNGIGIPDDKLDS 1819 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +PF Q S +G GLGL + K +VD G + S GT + P+ S Sbjct: 1820 VCEPFIQAEGSYTRSQQGAGLGLTITKRLVDLMHGTMALESEAGVGTTAYVTLPVGLLSQ 1879 Score = 130 bits (328), Expect = 8e-28, Method: Composition-based stats. Identities = 47/509 (9%), Positives = 128/509 (25%), Gaps = 43/509 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 ++ + G A +++G L + + + Sbjct: 1032 RDNTFLAVNPSFARERGYEAEELVGQPLFMLYPEAALPGLREHIAHADATGHELFEAMHM 1091 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ V +++ L R Sbjct: 1092 RKDGSTFPVLVEITVL--MDDEGRPQ--TRLAYCLDITRRKVVEQQLHRALAAAKAGTWE 1147 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 ++ + + P + S L + D + +E+ L Sbjct: 1148 WNLSTNENVWSPETYRLYELDPDRHPASYDSWLLSVHPDDRDRA-AHDVAEMARQEAPLA 1206 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETV 326 + +T + + ++ YL + + E Sbjct: 1207 VEYRLNTHDGRERWLLSLGELQRDMHGTGTAYLGLVLDITERKRLERELHENEGRYRSLF 1266 Query: 327 DKCPIPF----FVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + V + NP++ + + + + + + Sbjct: 1267 ESMNEGLCLLEMVRDPDGQPVDYRVLDVNPAYGRILGVAPDQAVGRL--VREIFNLKQAP 1324 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + P++ R A ++ ++ + + + Sbjct: 1325 NLDVYVPLLETRQP-------ATFESMLPELGKHFRVSAFALQGE-------RFVAMFQD 1370 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++ E ++ + + + +++ G IL NR ++LFGY +EDI Sbjct: 1371 VTALWEARQAEERSALRFRELFGFSPLPMGYMDQHGRILDLNRRFTELFGYTLEDIPTLD 1430 Query: 497 FTVFLEQNTPSVMNHYLTEI------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 P+ + + D R+ + K+ ++ + I + Sbjct: 1431 DWREKAYPDPAYRREVIAQWDAALDNRRADTREIPSAEYRVTCKDGRIRDVLITG--MTT 1488 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 DI+E K+ + L+ ++ Sbjct: 1489 EHGLLACFVDITERKRFETHLAEREEQLR 1517 Score = 97.4 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 36/397 (9%), Positives = 100/397 (25%), Gaps = 19/397 (4%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDI---FSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + L + + + ++ ++ TE D Sbjct: 758 RLRILRFTPTATQVFHLAQADQGRPLAEVKSQVQDETALAQAESTLTTGKETEAEVMHRD 817 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 K E ++ + + N + E R Sbjct: 818 GRIFLKRVFPFFGPQGDTEGVVMTYTDITKLKDAEEVLRRSNETLEGQVAARTRELEVAR 877 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + +D+ P ++ N + + + ++ Sbjct: 878 QEAERRAVELEAIMDQAPAAVWITRDTEARTIIGNQASYHVLRMAPGSNVSKTLEGVPYR 937 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + M + + + + S + N E Sbjct: 938 ALRNGYELPLQELPMQRATRGE--HVIGQEVDLVFADGQSRTIFGNAAPLRNFLGEIYGA 995 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489 G+ + + + + + + E + G+ I+ R+ L+ N + ++ GY Sbjct: 996 VGVFLDITQLKSAQAEAL----RWQQLFERSEFGLVIVRVRDNTFLAVNPSFARERGYEA 1051 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E+++ +P + + + ++ + + K+ + + I L Sbjct: 1052 EELVGQPLFMLYPEAALPGLREHIAHADATGHEL---FEAMHMRKDGSTFPVLVEITVLM 1108 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 DI+ K + +L A A+ + Sbjct: 1109 DDEGRPQTRLAYCLDITRRKVVEQQLHRALAAAKAGT 1145 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 25/373 (6%), Positives = 84/373 (22%), Gaps = 36/373 (9%) Query: 90 DAHG-----YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 D G + +++ + +G + +G + ++ ++ + LL+ + Sbjct: 1281 DPDGQPVDYRVLDVNPAYGRILGVAPDQAVGRLVREIFNLKQAPNLDVYVPLLETRQPAT 1340 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++ P G + V G R + + R +R +F Sbjct: 1341 FESM-LPELGKHFRVS-----------AFALQGERFVAMFQDVTALWEARQAEERSALRF 1388 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPH--------LRMKNKVSSLTEYYAHKDDVLKT 256 L + I + + + Sbjct: 1389 RELFGFSPLPMGYMDQHGRILDLNRRFTELFGYTLEDIPTLDDWREKAYPDPAYRREVIA 1448 Query: 257 EKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + L + + E ++ + + + ++ + Sbjct: 1449 QWDAALDNRRADTREIPSAEYRVTCKDGRIRDVLITGMTTEHGLLACFVDITERKRFETH 1508 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E V+ P ++ + ++ K + + Sbjct: 1509 LAEREEQLRLFVEHAPAAIAMFDRDMTYLAVSRRWIDDYKLDERAVLGRS--------HY 1560 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ + +++ A N+ +++ Sbjct: 1561 EIFPEIPQRWKRIHQQCLAGAIERADSDPFVRLDGNTQFVSWEIRPWLTPEGAIGGIVCF 1620 Query: 434 EPEDVDTRINKRK 446 + + + Sbjct: 1621 SEDVTLRKQAETA 1633 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 17/276 (6%), Positives = 61/276 (22%), Gaps = 25/276 (9%) Query: 57 QNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM- 113 Q+ ++ + + F + + +D HG + +++ + G + Sbjct: 1369 QDVTALWEARQAEERSALRFRELFGFSPLPMGY-MDQHGRILDLNRRFTELFGYTLEDIP 1427 Query: 114 IGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGKT-----TLWPIEGTNLYVPIDLAA 165 + + I L + + + +G V I Sbjct: 1428 TLDDWREKAYPDPAYRREVIAQWDAALDNRRADTREIPSAEYRVTCKDGRIRDVLITG-- 1485 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + + + + F +++ E ++ Sbjct: 1486 --MTTEHGLLACFV------DITERKRFETHLAEREEQLRLFVEHAPAAIAMFDRDMTYL 1537 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---SEESSLPEQEDFHTINLNQ 282 + ++ + L + + + + + + F ++ N Sbjct: 1538 AVSRRWIDDYKLDERAVLGRSHYEIFPEIPQRWKRIHQQCLAGAIERADSDPFVRLDGNT 1597 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + +L + Sbjct: 1598 QFVSWEIRPWLTPEGAIGGIVCFSEDVTLRKQAETA 1633 >gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup] Length = 773 Score = 355 bits (912), Expect = 2e-95, Method: Composition-based stats. Identities = 123/506 (24%), Positives = 223/506 (44%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y D + +S +++ + + + +M + I Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQISAIINPNDANFFDLAQELMSGKKKHIDINV----- 339 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M + P GI + + + + +++ +E Sbjct: 340 PMRHADGHYVWMRIRAEVTEEEEP---HLVGISFDISEQQQLAEQTAQADLRIRDAIENI 396 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E ++ Y + Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQILQSGIQRATVEAMARPAISEYPLKDDGTG- 455 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 456 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 509 IQELKRARGSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ FGPLG+ RY EY + I SG +L ++ND+LD+SKIE+G+ +L + L+ Sbjct: 569 SDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFSLDCKNTDLEP 628 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SEA+ + A EK I++ T+ + D R++KQI LN++SNA+ FTPSGG I Sbjct: 629 IISEAVRTLTPQAQEKNIVVTTNITPEL-HAEVDGRAMKQIFLNLISNAVKFTPSGGNID 687 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +I ++ DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 688 V-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLE 746 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S KGT + II P+ Sbjct: 747 LHKGKLEITSKEMKGTTVTIIMPITQ 772 >gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1044 Score = 355 bits (912), Expect = 2e-95, Method: Composition-based stats. Identities = 112/663 (16%), Positives = 232/663 (34%), Gaps = 48/663 (7%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKV 240 R R R ++K+ ++ K I + Sbjct: 263 RQLAQEREALARSEEKWRNILVHTPQIGISLDPKGRIVFANEYFLKLTGWEQEEVLGRDW 322 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKES 299 + ++ + + + + E + N ++T ++S Sbjct: 323 FEVCIPVEIRESTREFFDSVMAGGQSLAYSTHENEIIGKNGARHTIGWANAVAFDSSGLP 382 Query: 300 FEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354 + + + E NL VD P+ + G + Y N + Sbjct: 383 TDVTSLGVDLTERKHAAEVLVESRNLYQSLVDNLPLSIMTFDRDGKINYINQFHIDSFAK 442 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 +D L L + I P + ++ + L + S + Sbjct: 443 GRLD---KEYFLGRALHELPGLVSAGIGPELKEVLQGRPVSLPS-LFIPRLAAGGSAWQS 498 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGI 473 + + ++++ + +L LE T+DG+ + G Sbjct: 499 VKAIPLFK-DGIFSGGILMREDITARKMSEEAVRQSEERLALALEVTNDGLWDWDCVSGS 557 Query: 474 ILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 + + GY + + + + + ++ ++ Q E Sbjct: 558 -TYFSPHYYAMLGYEPGEFEANYATWRSLIHPDDVLAVEDEVSRHVASG--QVFEIEFRM 614 Query: 532 STKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 +K + + + + T D++E K + AK+ AE + KS Sbjct: 615 KSKSGQWQWIMARGRVVEKDEQDHAVRMVGTHVDVTERKNAEYVALRAKEAAEAANRAKS 674 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTPL I+G ++++ N +EY++ +S + + +++D+LD Sbjct: 675 EFLANMSHEIRTPLNGIMGMLQLLQTTSL----NHEQLEYSSMAVQSTSRLTSLLSDILD 730 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +S++E+GKM + E L + + ++I L A + + +R F + +P+ ++ D ++ Sbjct: 731 LSRVEAGKMPIRPEVFDLRKKLHQSIDLFASIALQSGVELRHHFDDTLPQHVIGDPLRLQ 790 Query: 706 QIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 Q+ N++ NA FT G + + + + + V D+G G+ + L +PF Sbjct: 791 QVLTNLIGNAFKFTERGF-VSVEAYPLPARNENQLRIFFEVSDSGCGIPDEALGLLFEPF 849 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEII------FPLYD 812 Q+ + +G GLGL + K +V G I S GT + P D Sbjct: 850 SQVSQGYTRQYQGAGLGLSICKRLVGLMGGNMAISSEVGVGTSIYFCVTLDKALKLPAQD 909 Query: 813 TSH 815 +S Sbjct: 910 SSA 912 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 82/301 (27%), Gaps = 11/301 (3%) Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 ++ K ++ L + A E V I + G + +AN F Sbjct: 247 LALVRFALKRPYQTLFRQLAQEREALARSEEKWRNILVHTPQIGISLDPKGRIVFANEYF 306 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L LT ++ + + + P + + + +A S + I Sbjct: 307 LKLTGWEQEEVLGRDWFEVCI---PVEIRESTREFFDSVMAGGQSLAYSTHENEIIGKNG 363 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + + + + + + S+++ I Sbjct: 364 ARHTIGWANAVAFDSSGLPTDVTSLGVDLTERKHAAEVLVESRNLYQSLVDNLPLSIMTF 423 Query: 469 NREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +R+G I N+ F E L + L + + L E+L +L Sbjct: 424 DRDGKINYINQFHIDSFAKGRLDKEYFLGRAL-HELPGLVSAGIGPELKEVL-QGRPVSL 481 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + + + L L DI+ K + + +++ Sbjct: 482 PSLFIPRLAAGGSAWQSVKAIPLFKDGIFSGGILMREDITARKMSEEAVRQSEERLALAL 541 Query: 583 S 583 Sbjct: 542 E 542 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 36/379 (9%), Positives = 88/379 (23%), Gaps = 21/379 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146 +D G + +E K G +++G +V + I + ++ + Sbjct: 293 LDPKGRIVFANEYFLKLTGWEQEEVLGRDWFEVCIPVEIRESTREFFDSVMAGGQSLAYS 352 Query: 147 TTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 T I G I A + + + G+ + + Sbjct: 353 THENEIIGKNGARHTIGWANAVAFDSSGLPTDVTSLGV--DLTERKHAAEVLVESRNLYQ 410 Query: 206 HLHEIKKGHSSVEKEKYDI-----FSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEK 258 L + I F S K + + E Sbjct: 411 SLVDNLPLSIMTFDRDGKINYINQFHIDSFAKGRLDKEYFLGRALHELPGLVSAGIGPEL 470 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYF 315 +L SLP + L + S L Sbjct: 471 KEVLQGRPVSLPSLFIPRLAAGGSAWQSVKAIPLFKDGIFSGGILMREDITARKMSEEAV 530 Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E ++ + + Y +P + + Y+ + +L+ Sbjct: 531 RQSEERLALALEVTNDGLWDWDCVSGSTYFSPHYYAMLGYEPGEFEANYATWRSLIHPDD 590 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + V + + R+ + + M + ++ + G Sbjct: 591 V--LAVEDEVSRHVASGQVFEIEFRM--KSKSGQWQWIMARGRVVEKDEQDHAVRMVGTH 646 Query: 435 PEDVDTRINK-RKMEIEVM 452 + + + + + + Sbjct: 647 VDVTERKNAEYVALRAKEA 665 >gi|39934628|ref|NP_946904.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648477|emb|CAE26999.1| sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain [Rhodopseudomonas palustris CGA009] Length = 903 Score = 355 bits (912), Expect = 2e-95, Method: Composition-based stats. Identities = 111/598 (18%), Positives = 232/598 (38%), Gaps = 47/598 (7%) Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L + + + H +++ S L + Sbjct: 41 SLSVMAGRIASQHTRAWEPPGVGHGLDVP--WWIFVISLAVGLSIAGLIELQLSRYER-R 97 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + V+ S G + N + L Y + I + L+ Sbjct: 98 NAHKLRQAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGYTAEQAIGQN--ATELMV 155 Query: 372 APKLSDNN-------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 L D A R++ T + + + I+ + + M Sbjct: 156 PDDLRDEEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIRADDGRLIGMAASMR 215 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + + ++ ++ +R ++E + +ILE + + + G I Sbjct: 216 DITD-LVQAEREVHDLNAALERQVAERTCQLEKTLTLQTAILERAAYAVIATDVTGTITL 274 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGST 533 N A ++ GY ED++ + + + I L+ + Sbjct: 275 FNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLARND 334 Query: 534 KE----------EKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579 + + R+ + +L + D++E + +++L A+ AE Sbjct: 335 PDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARASAE 394 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S+ K+DFLA +SHEIRTPL IIG+++++ R I + + + Sbjct: 395 QASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQ---VMRIFEASDSLRV 451 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 I++D+LD SKIE+ + L +P+ ++E ++ S+++ A+EK + + + P ++ Sbjct: 452 IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVLIG 511 Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKA 756 D ++Q+ LN+++NA+ FT +G ++I+S + + + V DTG+G++ + Sbjct: 512 DAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQKGL 571 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812 K F Q + + GTGLGL +++ +V A G+ I S P G+ E+ P+ + Sbjct: 572 FKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 22/279 (7%), Positives = 61/279 (21%), Gaps = 41/279 (14%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150 G + ++ + G A + IG ++ + D + + + T Sbjct: 124 DGTVLSWNKTAERLFGYTAEQAIGQNATELMVPDDLRDEEQQMLSGISDGTAFAYLWTKR 183 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDK---- 202 L V + ++ PI + + G + L L++ Sbjct: 184 KRANGTL-VDVAVSISPIRADDGRLIGMA--ASMRDITDLVQAEREVHDLNAALERQVAE 240 Query: 203 ----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAH 249 + + E I + ++ + + H Sbjct: 241 RTCQLEKTLTLQTAILERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH 300 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN----------------QYTKKQYFGTLQ 293 D L + S + + L+ Sbjct: 301 DSDELAARAEAMRKEGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLR 360 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + L + +++ + ++ Sbjct: 361 TKTGVNLGVLGIAVDLTEQLKYEDELKAARASAEQASAA 399 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 36/368 (9%), Positives = 77/368 (20%), Gaps = 39/368 (10%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 R D G + + + +G A +IG + D + +++ Sbjct: 257 ERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH--DSDELAARAEAMRK 314 Query: 140 QNTWYG---------------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + T +W I+ +P L + ++ G G + Sbjct: 315 EGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAV 374 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 K K + ++P + + Sbjct: 375 --DLTEQLKYEDELKAARASAEQASAAKADFLANMSH-----EIRTPLNGIIGYADLVLE 427 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 E A + S + + DF I T + + + Sbjct: 428 DETLAPDTRRQVMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASII 487 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVD 358 + + P + G L N + T Sbjct: 488 EPKADEKGLKLIATA---------QATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVEL 538 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + G + L+ + I + + A + L + Sbjct: 539 IVSCIGRVDHLVRLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQR 598 Query: 419 EKANQFPE 426 E Sbjct: 599 IVQAMHGE 606 >gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 791 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 14/368 (3%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E ++ +E + + I + +G I N +L GY +++L K + Sbjct: 242 EEYAKIFRAVEQSPASVVITDAQGNIEYVNPKFCQLTGYSAQEVLGKNPRLLKSGEMSPN 301 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 L ++ L + L I + + DI+ Sbjct: 302 FYRDLWHTVTTGLEW--HGEFYNRAQNGSLFWEAASISAIRSEQGKITHFVAVKDDITAR 359 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + +L A+ AE + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 360 KKLERELQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLSG----EQR 415 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E R+ +LD++ND+LD+S++ESG++ L P+ L + E L + A +K + Sbjct: 416 ELLTVQRRAALALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNL 475 Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LR 740 + +++P+ AD ++Q+ +N++ NAI FT GG I + E V Sbjct: 476 AFSITLEDDLPKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQQGEMVKLKFS 535 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G G+ + + +PF Q GTGLGL +++ +V G + STP + Sbjct: 536 VVDSGCGIPSEAQSQIFEPFTQADAYVTRHHGGTGLGLTISQRLVQLFGGTLQVESTPNQ 595 Query: 801 GTLIEIIF 808 G+ I Sbjct: 596 GSRFSFIL 603 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 32/334 (9%), Positives = 87/334 (26%), Gaps = 24/334 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143 DA G ++ ++ + + G A +++G ++S + D + + W Sbjct: 261 TDAQGNIEYVNPKFCQLTGYSAQEVLGKNPRLLKSGEMSPNFYRD----LWHTVTTGLEW 316 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +G+ G+ + I S + + F + ++ + Sbjct: 317 HGEFYNRAQNGSLF--WEAASISAIRSEQGKITHF--VAVKDDITARKKLERELQQARDR 372 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K ++ + + S + L Sbjct: 373 AESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLSGEQRELLTVQRRAALALLDLI 432 Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ L E ++ +F +Q+ ++ + +L + Sbjct: 433 NDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDLPKTYFAD 492 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + + GN + SV+ + G + L + S Sbjct: 493 RARLRQ----VMINLVGNAIKFTQQG---GVWISVERLSQQGEMVKLKFSVVDSGCGIPS 545 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + A + + + L +T Sbjct: 546 EAQSQIFEPFT---QADAYVTRHHGGTGLGLTIS 576 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 8/134 (5%) Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V++ P + GN+ Y NP F LT Y + + + G + L N + Sbjct: 249 RAVEQSPASVVITDAQGNIEYVNPKFCQLTGYSAQEVL----GKNPRLLKSGEMSPNFYR 304 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + ++ + ++ + + Sbjct: 305 DLWHTVTTGLEWHGEFYNRA---QNGSLFWEAASISAIRSEQGKITHFVAVKDDITARKK 361 Query: 443 NKRKMEIEVMQLCS 456 +R+++ + S Sbjct: 362 LERELQQARDRAES 375 >gi|298245291|ref|ZP_06969097.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297552772|gb|EFH86637.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 107/731 (14%), Positives = 231/731 (31%), Gaps = 46/731 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR---QNTWYGK 146 G + +I+E ++IG L + + + + R T + Sbjct: 151 PEGIVLDINEVPLDDAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIARASTGETVRFE 210 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L P EG + + + P + + GI L Sbjct: 211 AQLCPREG--MLLSFESVITPHLDADHQIEYLVIAGI--DITARKRAERDIHALIDAIPQ 266 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L + V+ + + + + + + Sbjct: 267 LVWTGRPDGYVDSYNQRWLDYTGLTTAQAQGDGW--MQCTHPADRQRVLETWQSAVQTGR 324 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324 EQ + ++ +Y+S + + E Sbjct: 325 PYETEQRLLQSTTGEYRWFLMQAVPFKDAQGTILKYVSTCTDIDEQKRAQQQLKTSEENW 384 Query: 325 --TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P + L Y + + T + + P + Sbjct: 385 RVLAETVPQLVWTTLPDGLVEYWSQRWYAYTGSSFEHALGHE---WSQFLHPDEYQHTLT 441 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + T + ++ + + G + + + Sbjct: 442 VW---HHALETGKPYEIEYRLKEGQTGEYRWFLARGMPVRDEAGQIVKWFGTCTDIDEHK 498 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTV 499 + + + ++ + GI + + I+ N ++ GY ED+ + + Sbjct: 499 RMEEALRESQARASVLMNSNIIGIFV-DEGEQIVDANDTFLRMTGYTREDLRERCMNWVH 557 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTM 558 + E+ + EK + K+ L + + L + Sbjct: 558 MTPPEYQARTQQAHQELAAQQSMTPYEKEYMC--KDGSRLPVLVCGVVLQHHPLQMIAFV 615 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D S K+ + + K F++ SHE+R PLTA+ ++ + +R Sbjct: 616 LDNSARKELEQR--------------KDGFISMASHELRNPLTALKMQAQ-LVRKRLEKQ 660 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G + ++ + ++ +LLD+SKI++G++ E V LD + E +Q Sbjct: 661 GLNGAAAALSGVEGPVKQLERLIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQI 720 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 I++R + ++ + D + Q+ +N+LSNAI ++P+ + I + TS E V Sbjct: 721 HTTHTIVVRGAAPCSL---VGDKDRLGQVFINLLSNAIKYSPAAETVEIDLS-TSRETVT 776 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 +RVRD G G+ + +K + F + +Q G G+GL + + +V + G + S Sbjct: 777 VRVRDHGFGIPREQRDKVFERFYRAAGPKQKAIPGLGMGLYIVEEIVKRHGGTITVDSEV 836 Query: 799 AKGTLIEIIFP 809 KG+ + P Sbjct: 837 GKGSTFTVTLP 847 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 53/508 (10%), Positives = 127/508 (25%), Gaps = 49/508 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT------- 142 DA ++ ++ IG +++G + + + + K + T Sbjct: 34 DAE-TIRYVNTRAQTMIGASREQLLGNPFWRGAPQ--LVSPSLYQAVRKTRQTQEPTEVE 90 Query: 143 -WYGKTTLW------PIEGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 W T W P G +++A P F +G + + R Sbjct: 91 YWSPMTRNWLHAQLTPTVGGLTLQFHEMSAPTPCQE---TFP--QGERLCIDDLDGLHTR 145 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + ++E+ + V +E+ P S L A Sbjct: 146 IGILTPEGIVLDINEVPLDDAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIAR----- 200 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 S ++ + + + + + + + Sbjct: 201 --------ASTGETVRFEAQLCPREGMLLSFESVITPHLDADHQIEYLVIAGIDITARKR 252 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + +D P + N +L T + + G + A Sbjct: 253 AE---RDIHALIDAIPQLVWTGRPDGYVDSYNQRWLDYTGLTTAQA-QGDGWMQCTHPAD 308 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + + +Q + + Sbjct: 309 RQRVLETWQSAVQTGR-----PYETEQRLLQSTTGEYRWFLMQAVPFKDAQGTILKYVST 363 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + +++++ + E + +G++ ++ G E L Sbjct: 364 CTDIDEQKRAQQQLKTSEENWRVLAETVPQLVWTTLPDGLVEYWSQRWYAYTGSSFEHAL 423 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSS 552 ++ FL + L +E G T E + R + + Sbjct: 424 GHEWSQFLHPDEYQHTLTVWHHALETGKPYEIEYRLKEGQTGEYRWFLARGMPVRDEAGQ 483 Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIA 578 + T DI E K+ + L ++ A Sbjct: 484 IVKWFGTCTDIDEHKRMEEALRESQARA 511 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 30/372 (8%), Positives = 87/372 (23%), Gaps = 21/372 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 W GY+ ++ G + G + ++ + Sbjct: 267 LVWTGRPDGYVDSYNQRWLDYTGLTTAQAQGDGWMQCTHPADRQRVLETWQSAVQTGRPY 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L T Y + A+P + + K ++ Sbjct: 327 ETEQRLLQST-TGEYRWFLMQAVPFKDAQGTILKY--VSTCTDIDEQKRAQQQLKTSEEN 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVL--KTEK 258 + L E + ++ + + H D+ T Sbjct: 384 WRVLAETVPQLVWTTLPDGLVEYWSQRWYAYTGSSFEHALGHEWSQFLHPDEYQHTLTVW 443 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314 + L + + E +++ + + ++ + Sbjct: 444 HHALETGKPYEIEYRLKEGQTGEYRWFLARGMPVRDEAGQIVKWFGTCTDIDEHKRMEEA 503 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E + ++ I FV + AN +FL +T Y +D+ + P+ Sbjct: 504 LRESQARASVLMNSNIIGIFVDEGEQIVDANDTFLRMTGYTR-EDLRERCMNWVHMTPPE 562 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + ++ + + + + Sbjct: 563 Y-QARTQQAHQELAAQQSMTPYEKEY--MCKDGSRLPVLVCGVVL----QHHPLQMIAFV 615 Query: 435 PEDVDTRINKRK 446 ++ + +++ Sbjct: 616 LDNSARKELEQR 627 Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 40/166 (24%), Gaps = 5/166 (3%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD +++ + SE + + W G ++ S+ G+ + Sbjct: 365 TDIDEQKRAQQQLKTSEENWRVLAETVP-QLVWTTLPDGLVEYWSQRWYAYTGSSFEHAL 423 Query: 115 GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G + L+ + T Y +P+ Sbjct: 424 GHEWSQFLHPDEYQHTLTVWHHALETGKPYE-IEYRLKEGQTGEYRWFLARGMPVRDEAG 482 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 + + FG + + S L V++ Sbjct: 483 QIV--KWFGTCTDIDEHKRMEEALRESQARASVLMNSNIIGIFVDE 526 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 69/277 (24%), Gaps = 28/277 (10%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 ++ P F V + Y N + + Sbjct: 1 MSRIKRTERLTPASSETLLHMLETLPDALFLVNDAETIRYVNTRAQTMIGASREQLLGNP 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 P+L + + V R + W+ + Sbjct: 61 FWRGA----PQLVSPSLYQAVRKTRQTQEPTEVE------YWSPMTRNWLHAQLTPTVGG 110 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + +T ++ I+ L+ I I+ EGI+L N Sbjct: 111 LTLQFHEMSAPTPCQETFPQGERLCIDD------LDGLHTRIGILTPEGIVLDINEVPLD 164 Query: 484 LFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 E+++ KP + S + + + +T+ +E LL Sbjct: 165 DAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIARASTG---ETVRFEAQLCPREGMLL 221 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 S +I + + DI+ K+ + + Sbjct: 222 SFESVITPHLDADHQIEYLVIAGIDITARKRAERDIH 258 >gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter metallireducens GS-15] Length = 589 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 125/579 (21%), Positives = 226/579 (39%), Gaps = 31/579 (5%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + + LT AH+D + P + + S + + G Sbjct: 38 AEIRQNLATEARLTRMIAHRDIGRMKDDAPAVAAAISR-----ETRARVTIILAGGEVVG 92 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349 + + E +H N P + G + P V F+ Sbjct: 93 DSEIAPGQLKELENHLNRPEVQQALKSGSGESIRYSATIKTPMLYVAVPLQTAGGEEGFV 152 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 L+ + +E A G L L+ + + V+ Y R + + + Sbjct: 153 RLS--LPLTALEKAEGSIRTLLGASLAVSLLVALVLSYILSRVTSRSLRTITALAKQIGK 210 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 IP ++ E ++ ++ + E +L +IL +G+ + + Sbjct: 211 GNFNRRIPVPTRDEVGELARVMNDMAARIEQQLERTSA--EKNRLDTILRGMGEGLMVTD 268 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 G+I N A LF E + + +E V+N I++ + EK+T Sbjct: 269 ANGLITLVNPAFLGLFSLN-ESVEGRHI---IEIARHPVLNDAFKAIVASGDERV-EKMT 323 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 L +E+ +L+ + + HDI++ + + + + DF+ Sbjct: 324 LTMGEEKHVLTHWVPLVDNGELQGVVAVFHDITDLTRLE--------------NIRRDFV 369 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE+RTP+T I G++E + + R ++ I + ++ DLL +S+ Sbjct: 370 ANVSHELRTPVTVIKGYAEALIDGAMET-DPERARKFVGIILSHSERLAALIGDLLTLSQ 428 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 +E+G MNL V ++ A+ L+Q A K I I S + +LAD ++Q+ + Sbjct: 429 LEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRLEQVLV 488 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+L NAI +TP GG I S N V + V+DTGVG+ +L + + F ++ ++ Sbjct: 489 NLLDNAIKYTPEGGAISFSAAVKEN-MVRIGVKDTGVGIPPKDLPRIFERFYRVDTARSR 547 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V + G + S P KG+ Sbjct: 548 DEGGTGLGLSIVKHIVQLHGGAVGVESEPGKGSEFWFTI 586 >gi|298241118|ref|ZP_06964925.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554172|gb|EFH88036.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 938 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 107/733 (14%), Positives = 237/733 (32%), Gaps = 49/733 (6%) Query: 91 AHGYLKEISEE-LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-------RQNT 142 G + EI++ L ++ +++G + + + L R + Sbjct: 222 PEGLVLEINQRPLADSLCQR-EEVVGKPFIE---TPWWSYDPAVQQQLHTAIEQASRGKS 277 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + + P EG Y+ + + P + G A L Sbjct: 278 VHFEARIHPQEG--WYLDLTVTMTPHLDADGHVEYLIYAG--RDITARKRAEAELHALVD 333 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + ++ S + + + ++ Sbjct: 334 AIPQQVWTIRPDGYLDYCNQRWLDYTS--LSIEQAQGDGWIQCLHPDDRQRIQDAWQMSR 391 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EG 318 + EQ H + +++ + + ++ + E Sbjct: 392 KTGMPFETEQRLRHGMTGTYRWFLVRALPVRDETGQIIKWFGTSTDIEEQKRAEQKLKES 451 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + P +V G Y N + T ++ I+ P + Sbjct: 452 EERFRLLAETVPQVVWVARPDGQHEYTNQHWCDYTGLT-LEQIQSDRWAQLPFFHPDDRE 510 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + RL Q ++ + + G + Sbjct: 511 DRQAR-WQHALDTGAMYEHEGRLRNGQT--GEYRWFLTRGVPMRDEAGQIVKWFGTSTDI 567 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + + + ++ + GI II E I+ N + GY ED+ Sbjct: 568 EEQKRTEEALRQSQKRASVLMNSNMIGINIIEGE-QIVDANDTFLHMTGYTREDLRAGRL 626 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SL 556 + P + L +Q++ K+ L + + L Sbjct: 627 NW-MRMTLPEYLARTRQAHQELAAQQSITYEKEYVCKDGSRLPVLVCGVVLQHHPFQGIA 685 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D S K+ + + K F++ SHE+R PL ++ ++ + +R Sbjct: 686 FILDNSARKELEQR--------------KDSFISMASHELRNPLASLKMQTQ-LVRKRLE 730 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + ++ + ++ +LLD+SKI++G++ E V LD + E +Q Sbjct: 731 KQTHHEAAALLSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQ 790 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + I++R + ++ + D + Q N+LSNAI ++P + + + ++ Sbjct: 791 QLSPTHTIVVRGAVPCSL---VGDKDRLWQAFTNLLSNAIKYSPDAETVEMDLSASAEI- 846 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V++RVRD G+G+ + +K F ++ +Q G G+GL + +V A+ G + S Sbjct: 847 VMIRVRDHGLGIPREQCDKIFDRFYRVSGPRQRAIPGLGMGLYIVAEIVKAHGGTIMVDS 906 Query: 797 TPAKGTLIEIIFP 809 KG+ + P Sbjct: 907 AVGKGSTFTVTLP 919 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 55/507 (10%), Positives = 123/507 (24%), Gaps = 42/507 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGK 146 ID + + G + G L S H+ +L+ + T W Sbjct: 103 IDDAATIVYANVSAQTLTGATREDVCGKPLW--SGAPHLVSTALYQAVLRARQTRKWTEV 160 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 P+ LP +G + N + ++ ++K+ + Sbjct: 161 EYRSPVT----QTWFHAQLLP--------TGVGLAVLFQENTEPKRFQDALRQSEQKYLN 208 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------KDDVLKTEKY 259 L E +V + + P + + + + + + Sbjct: 209 LLESVSDRMAVLTPEGLVLEINQRPLADSLCQREEVVGKPFIETPWWSYDPAVQQQLHTA 268 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 S S+ + H + + + + Sbjct: 269 IEQASRGKSVHFEARIHPQEGWYLDLTVTMTPHLDADGHVEYLIYAGRDITARKRAEAE- 327 Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 VD P + Y N +L T S++ + G + L Sbjct: 328 --LHALVDAIPQQVWTIRPDGYLDYCNQRWLDYTSL-SIEQAQGDGWIQCLHPDD---RQ 381 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R RL ++ + + G + Sbjct: 382 RIQDAWQMSRKTGMPFETEQRLR--HGMTGTYRWFLVRALPVRDETGQIIKWFGTSTDIE 439 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++K++ + + E + + +G TN+ G +E I + Sbjct: 440 EQKRAEQKLKESEERFRLLAETVPQVVWVARPDGQHEYTNQHWCDYTGLTLEQIQSDRWA 499 Query: 499 VF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC-- 553 + L E + + + + Sbjct: 500 QLPFFHPDDREDRQARWQHALDTGA--MYEHEGRLRNGQTGEYRWFLTRGVPMRDEAGQI 557 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIA 578 + T DI E K+ + L ++K A Sbjct: 558 VKWFGTSTDIEEQKRTEEALRQSQKRA 584 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 93/396 (23%), Gaps = 26/396 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W I GYL ++ + G + ++ + Sbjct: 339 VWTIRPDGYLDYCNQRWLDYTSLSIEQAQGDGWIQCLHPDDRQRIQDAWQMSRKTGMPFE 398 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 T Y + ALP+ + + FG K +++F Sbjct: 399 TEQRLRHGMTGTYRWFLVRALPVRDETGQII--KWFGTSTDIEEQKRAEQKLKESEERFR 456 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 L E V + ++ + L ++ + + Sbjct: 457 LLAETVPQVVWVARPDGQHEYTNQHWCDYTGLTLEQIQSDRWAQLPFFHPDDREDRQARW 516 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314 L + E + +++ + + ++ Sbjct: 517 QHALDTGAMYEHEGRLRNGQTGEYRWFLTRGVPMRDEAGQIVKWFGTSTDIEEQKRTEEA 576 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD-----------IEIA 363 + + ++ I + + AN +FL +T Y D + Sbjct: 577 LRQSQKRASVLMNSNMIGINIIEGEQIVDANDTFLHMTGYTREDLRAGRLNWMRMTLPEY 636 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + + + D + + + + FI A + Sbjct: 637 LARTRQAHQELAAQQSITYEKEYVCKDGSRLPVLV--CGVVLQHHPFQGIAFILDNSARK 694 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 E + I + R ++++ + LE Sbjct: 695 ELEQRKDSFISMASHELRNPLASLKMQTQLVRKRLE 730 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 90/299 (30%), Gaps = 22/299 (7%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSH 338 L ++ E Y + + + ++ P F+ Sbjct: 47 LEVRAGTHLRSQGWGHTCERDIYRTMSDTKQIRRLTPSSSETLITLLETLPGALFIIDDA 106 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + YAN S LT D P L + V+ R R Sbjct: 107 ATIVYANVSAQTLTGATREDVCGKPLWSGA----PHLVSTALYQAVLRARQTRKWTEVEY 162 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 R F P + + E+ + + + + + ++L Sbjct: 163 R--------SPVTQTWFHAQL----LPTGVGLAVLFQENTEPKRFQDALRQSEQKYLNLL 210 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E+ SD +A++ EG++L N+ E+++ KPF + + L + Sbjct: 211 ESVSDRMAVLTPEGLVLEINQRPLADSLCQREEVVGKPFIETPWWSYDPAVQQQLHTAIE 270 Query: 519 LDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572 R +++ +E L L + + + + + DI+ K+ + +L Sbjct: 271 QASRGKSVHFEARIHPQEGWYLDLTVTMTPHLDADGHVEYLIYAGRDITARKRAEAELH 329 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 7/161 (4%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I DT+ +R L ++LE + II+ I+ N + L G ED Sbjct: 67 DIYRTMSDTKQIRRLTPSSSETLITLLETLPGALFIIDDAATIVYANVSAQTLTGATRED 126 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + KP + + + + + + LP Sbjct: 127 VCGKPLWSGAPHLVSTALYQAVLRARQTRKWT----EVEYRSP---VTQTWFHAQLLPTG 179 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++ + +E K+ ++ L +++ SD +A + Sbjct: 180 VGLAVLFQENTEPKRFQDALRQSEQKYLNLLESVSDRMAVL 220 >gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella DSM 506] Length = 770 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 140/695 (20%), Positives = 267/695 (38%), Gaps = 70/695 (10%) Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKK 212 GT + L++ R R +G+V +V + ++ L + Sbjct: 91 GTGTTPDVLLSSSL---PPRATEDARRYGLVDSAGKVVAAHDEVAAAREQIGQLLANTQA 147 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 E S P L + + + + + Sbjct: 148 LTIFAENAGVLDVSMPDGSPALATVRNLPGVPYQLVVVQPLAGALATWQSDTILTVTLLS 207 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + + + D + + Sbjct: 208 TTGAVLLILGFAFHWQASRAREADGIY----------------DTVRARIDTALSRGRCG 251 Query: 333 FFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + + G + + S + ++ D++ G +++L+ + + K + Sbjct: 252 LWDWDMGRGRMFWSESMFEMLGFEPRDELISFGEVASLVHTDDTNLYDIAKEI--ADKPG 309 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 I R+ ++ + + + E GI + + R + Sbjct: 310 RTID---RVFRMKHADGHWVWLRARAEVVPQDNGEPPHLVGIAVDVTEERRLAERTATAD 366 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMN 510 M+L +E+ S+ + + ++ N L G+ F V+ Sbjct: 367 MRLRDAIESISESFVLWDASNRLVMCNSKFQSLHGFGDANVAPGTEFETVAALARQPVVR 426 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L D + + + + L + ++ Y DI+ K+ + + Sbjct: 427 IPLR---PEDRPEEGARAFEAQLEGGRWLKVT---ERRTKDGGYVSVGTDITALKRHEER 480 Query: 571 LSHAKKIAEK-----------------------------------ESSHKSDFLARVSHE 595 L ++K + KS+FLA +SHE Sbjct: 481 LMESEKRLMALVADLRKSQQTLEMQALQLAELAQNYADEKTKAEDANRAKSEFLANMSHE 540 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AIIGFSE++++ FGPLG+ +Y EY I SG +LD++ND+LD+S+IE+G+M Sbjct: 541 LRTPLNAIIGFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGRM 600 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 +L+ +PV LDE V+++I ++ + A+EK+I + + + AD R++KQI LN+LSNA Sbjct: 601 HLNLQPVELDEVVTDSIRVMSVRADEKQITVAADTDGAV-SLEADKRALKQITLNLLSNA 659 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I FTP G++ + T ++ +++ + D+G+G+ L K KPF Q+ + +G+G Sbjct: 660 IKFTPENGRVSVRTRRSARAALLV-IEDSGIGIPKAALAKIGKPFEQVESQFTKTHKGSG 718 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL +AK++V+ + G I S+ GT + I PL Sbjct: 719 LGLAIAKSLVELHGGTMRIRSSEGVGTTVIIRLPL 753 >gi|294054688|ref|YP_003548346.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614021|gb|ADE54176.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 1071 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 138/765 (18%), Positives = 250/765 (32%), Gaps = 43/765 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWY 144 DA G + ++ + G A + V L + N I +LK N Sbjct: 176 TDAEGVVIRMNPVAVELTGWPASNAVYRPAAAVFKTLQTENRQLAENPIDQVLKTGNAIE 235 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKK 203 KT I I +A + + G + R AL + Sbjct: 236 AKTPSILIARNGTERQITTSAFALRDNYGQLQGA--VLVFRDLQREFAMRDALVVERTRL 293 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEK 258 + L G + + ++ + K H DD+ + + Sbjct: 294 QNVLEGTDAGTWDWKVQTGELNVNERWASMFGYTAKELQPLSVETWIKHLHPDDLKQAQL 353 Query: 259 YPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSL 311 E L +F + + L+ + S ++ S Sbjct: 354 ALDAHFERKLLDYNVEFRMLHKQGHWVWVNSRGKVLEWSDDGKPLHMSGTHIDVTQRKST 413 Query: 312 SAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E +L D + + G + N + Y+S + I + L Sbjct: 414 ETALIEANSLLQGIYDAANLVSIISTDCDGIITGFNAGAERMLGYRSSEMIGVHSPLKIH 473 Query: 370 LDAPKLSDNNAIK-----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L+ S + ++ P+ + + R T + +T N Sbjct: 474 LEEEIRSVADELQLADNIPLFNVFKASVDMEKNERNWTYVCKDGSHRQVTLAVTMIRNDA 533 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 E G+ + RK+ L +L + + + + +NR + Sbjct: 534 GEITGYLGVAMDITAHLEATRKLSESQYILSKVLNSIPVRVFWKDTNSVYQGSNRLFAND 593 Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 E ++ F + +++ + L + +L L+ Sbjct: 594 ANLSSPERLIGLTDYDFGWDEQAELYREDDQKVMKSGRAK-LNYEEPQRRSDGELTWLKT 652 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L DI+ KQ + L AK AE S K +FLA +SHE+RTP Sbjct: 653 SKVPLKDKHGKVIGVLGCYEDITLRKQAEADLIQAKDEAEAASRAKDEFLAVMSHEMRTP 712 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L I+GFS +++ L N Y + I + N L +++D+LD +I + + Sbjct: 713 LNPILGFSAMLRE----SLPNEPEAGYLDTIVSAANRQLRLIDDILDYMRINNSSITASP 768 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718 EP L + A+ + + ++ ++ DL +++I N+L NA + Sbjct: 769 EPFRLADLCETAVHDASSLTDNLALDFHNELPDSQDFTVVTDLIMLRRILDNLLGNACKY 828 Query: 719 TPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T G + + + + VRDTG+G+T + F Q +S + EG G Sbjct: 829 TNEGSVDLYLRLAEYDSRISTFEIEVRDTGIGITEEMQRNLFEAFSQADSSYSRKHEGLG 888 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPH 817 LGL + K ++D G+ + S KG+ + PL DT P Sbjct: 889 LGLAICKRLLDILGGEISVESIRGKGSSFTLSIPLQIKEDTETPE 933 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 13/258 (5%) Query: 333 FFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRSD 390 Y L YA LT ++ +E++ LL A ++P+ + Sbjct: 39 IADYPTDQLQYARQLGTEQLTAARNRQALELSLLAVVLLSATIYISYRSILRPLKSLERE 98 Query: 391 RTCIA--ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 +A AS L W+ + + + + R + +++ Sbjct: 99 MREVADYASKELSPDDWDELQAAPGSIRATRTFPELNTISESYQSMLRALIERQTENRLQ 158 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---EQNT 505 E L +A D I I + EG+++ N +L G+P + + +P + Sbjct: 159 DE--HLRVTFDAIGDAILITDAEGVVIRMNPVAVELTGWPASNAVYRPAAAVFKTLQTEN 216 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDI 561 + + + ++L + ++ + + L + L D+ Sbjct: 217 RQLAENPIDQVLKTGNAIEAKTPSILIARNGTERQITTSAFALRDNYGQLQGAVLVFRDL 276 Query: 562 SEWKQEKNKLSHAKKIAE 579 ++ L + + Sbjct: 277 QREFAMRDALVVERTRLQ 294 >gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His KinaseA, ATPase and two REC (CheY-like) [Methylobacterium extorquens AM1] Length = 803 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 191/501 (38%), Gaps = 19/501 (3%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D P ++ G L + N + T + A L P Sbjct: 24 PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 80 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + A + + + ++ + N + G Sbjct: 81 LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 136 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +TR+ + + + ++++A++ I +G ++ + + G E Sbjct: 137 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 196 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + + + + E + E +E + + + Sbjct: 197 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSI 254 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+ K+ + + HA+ AE + KS FLA +SHE+RTPL+A+IG+SE + Sbjct: 255 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 313 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + LG + I+ S +L ++ND+LDISKIE+G++ L E + + + Sbjct: 314 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 373 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + Q +KR R F ++ + D ++Q +N++ NA F+ G +II+ Sbjct: 374 TAATQSLITKKRNRFRLDFEGDLGAMHQDQSKLRQSLINLIGNAAKFSEDG-EIILGVRR 432 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V DTG+G+T ++ + + F Q S + GTGLGL + +A V+ Sbjct: 433 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 492 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + ST G I P Sbjct: 493 GGTIGVESTFGAGATFTIRLP 513 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 T Q+ + + F + W +A G L + G +M Sbjct: 13 TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 68 Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + H++ + +W L +G Y A P+ + Sbjct: 69 DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 126 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 R +G + +++F L + + ++ Q Sbjct: 127 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 184 Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + + D E + + + + + Sbjct: 185 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 244 Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313 + E++ + Sbjct: 245 VPVLAEDGSIREWVGLNIDITARK 268 >gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1186 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 116/814 (14%), Positives = 249/814 (30%), Gaps = 116/814 (14%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148 GY K I+ + +G +++ + + I L + + T + Sbjct: 402 GLDGYFKRINPAFSQVLGYSDDELMAKPFVEFIHPDDLTATLREIQQLSEGKPTISFENR 461 Query: 149 LW----------------PIEGTNLYVPIDLA-------ALPIYSRNREFSGFRGFGIVH 185 P EGT D+ AL + + G + Sbjct: 462 YRCKDGRYRWLNWNAIASPAEGTIYAAARDITQQRQTELALKRQYQQGQLIG----NVTR 517 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKN 238 R + + K + + + + + P + + Sbjct: 518 RIRESLEIEEILKTAVTEVQSILNCDRVLVIEREGDASGQVIEESTLPGIKPALLGQPVS 577 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-------------------- 278 ++ + + S F Sbjct: 578 GLALAIIPDPSVPQICASGDLSQHPCTLCSHQFLNQFQIRASLEVAIYVQNQPWGLLVAS 637 Query: 279 --NLNQYTKKQYFGTLQNNSKESFEYLSHRN----------------------------- 307 + + + ++ + + ++ Sbjct: 638 QNEVARQWQPFEIELMEQLADQMGVAIAQAQLLDNLEAIVKQRTAQLTQTNERLQLEIQE 697 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 S E + + + + N + Y + + I L Sbjct: 698 RISTENALKESQQQLGNILKTAGDAIISIDEAQQIVMFNQGAEKIFGYAAKEIIGEP--L 755 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 LL + + + R + R+N +Q Sbjct: 756 EKLLPDAF-RRVHKQHIRSFGLASDASRQMAERSRDVFGQRQNGEEFPAEATISRSQTKT 814 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + + R ++ + QL +A I ++ + N+ + FG Sbjct: 815 GLLFTVMLKDITERRQSEAALRRSEEQLRLTTDALPVLICYVDADQRYRFINKTYADWFG 874 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 VE ++ + + + Y+ + L+ Q ++ + +++ L Sbjct: 875 QSVEAMMGRLVREIIGDSYYQQTQPYIEKALAG---QAVQYELAIAGAAGEVIDLSATYI 931 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DIS+ K + +++F++ VSHE+RTPLT+ Sbjct: 932 PDQGADGKVKGFFGLISDISDRKANE--------------RLQNEFISMVSHELRTPLTS 977 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I G +++ N + E ++ + + ++ND+LD+ +IESG++++ + Sbjct: 978 IHGSLKLMSMMIGD--SNSKEKELVAIALKNTDRLGRLINDVLDLERIESGRVSMTRQDC 1035 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 +L E + + A E + + I D + Q N+LSNAI F+PS Sbjct: 1036 NLAELMQHTAQAMAPMALELNVKLVVE--PIDITISLDPDRIIQTLTNLLSNAIKFSPSR 1093 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 +I+S T + V+L +D+G G+ + E + F Q+ + + R GTGLGL + K Sbjct: 1094 ANVILSATEREQD-VLLCTKDSGPGIPADKTELIFERFQQVDSRESRRLGGTGLGLAICK 1152 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V + GK ++ S KG+ P P Sbjct: 1153 QIVLQHGGKIWVESELEKGSAFYFTLPKLRNQLP 1186 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 35/312 (11%), Positives = 88/312 (28%), Gaps = 16/312 (5%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 H L + + +L+ + + Sbjct: 265 MMEARHTRRLVVGDHAGRLAGIITQTSLLEPLDPLQMLEELEQLQTLSETQTERLSQANL 324 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + ++ + + L + + + + R+ + + Sbjct: 325 QLQQTNQVLQKEVDERRRLESALQRANQLLEAQVGDQAAELVKANESLRLEVQDRQQAQH 384 Query: 453 QLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L T + + I +G N A S++ GY ++++ KPF F+ + + Sbjct: 385 ELEQFFVVTPNSMLCIAGLDGYFKRINPAFSQVLGYSDDELMAKPFVEFIHPDDLTATLR 444 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + ++ T+ K+ + L P DI++ +Q + L Sbjct: 445 EIQQLSEGKP--TISFENRYRCKDGRYRWLNWNAIASPAEGTIYAAARDITQQRQTELAL 502 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + + V+ IR L E I + + + I+ Sbjct: 503 KRQYQQ--------GQLIGNVTRRIRESL-----EIEEILKTAVTEVQSILNCDRVLVIE 549 Query: 632 RSGNLVLDIVND 643 R G+ ++ + Sbjct: 550 REGDASGQVIEE 561 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 9/144 (6%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + S SE V + +DA + I++ G M+G Sbjct: 824 DITERRQSEAALRRSEEQLRLTTDALPVLICY-VDADQRYRFINKTYADWFGQSVEAMMG 882 Query: 116 MRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG-TNLYVPIDLAALPIYSRNR 173 + ++ D + +I L Q I G + + +P + Sbjct: 883 RLVREIIGDSYYQQTQPYIEKALAGQA----VQYELAIAGAAGEVIDLSATYIPDQGADG 938 Query: 174 EFSGFRGFGIVHVNRVDNDPRALG 197 + GF FG++ L Sbjct: 939 KVKGF--FGLISDISDRKANERLQ 960 Score = 42.7 bits (99), Expect = 0.25, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 58/249 (23%), Gaps = 14/249 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKRQNT 142 ID + ++ K G A ++IG L + D + L + Sbjct: 726 IDEAQQIVMFNQGAEKIFGYAAKEIIGEPLEKLLP----DAFRRVHKQHIRSFGLASDAS 781 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + G + A SR++ +G ++ A +R ++ Sbjct: 782 RQMAERSRDVFGQRQNGE-EFPAEATISRSQTKTGLLFTVMLKDITERRQSEAALRRSEE 840 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + ++ + L +T+ Y Sbjct: 841 QLRLTTDALPVLICYVDADQRYRFINKTYADWFGQSVEAMMGRLVREIIGDSYYQQTQPY 900 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 ++ + + Q + + + S + + Sbjct: 901 IEKALAGQAVQYELAIAGAAGEVIDLSATYIPDQGADGKVKGFFGLISDISDRKANERLQ 960 Query: 320 NLTPETVDK 328 N V Sbjct: 961 NEFISMVSH 969 >gi|91203278|emb|CAJ72917.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 494 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 89/512 (17%), Positives = 199/512 (38%), Gaps = 30/512 (5%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 L + ++ +++ V G + Y NP+F+ +T Y + I G Sbjct: 6 EDGLHGLNKQHLSMLIHSIEHGSRSVIVTDVKGCIQYVNPAFVKITGYAKEEAI----GK 61 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + K + + + N+ Sbjct: 62 NPRILKSGETPQGQYKQLWETIVSGNEWEGEFHN---RKKTGEYYWVFATISPMKNEEGA 118 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 I+ E + + + + + ++ T+D + I+ +G++ N A K+FG Sbjct: 119 ITHFVAIQREITERKRKEV-------RFNAFVKNTADALIAIDEQGVVELFNPAAEKMFG 171 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLRI 543 Y E+++ + + + ++ L L+ + L K+ + + Sbjct: 172 YKKEEVVGENVIMLMPESYRKKHEDGLKRYLNTGKARILGTGPIELEALRKDGTAFPIEL 231 Query: 544 IIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I +L + + DI+E K + KL H+ + + ++ F SH+++ PL Sbjct: 232 TIGDARLDEYFTFIGIIRDITERKWAEQKLIHSMEELSRSNAELQQFAYVASHDLQEPLR 291 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I ++ + +R+ + EY + + ++NDLL S++ S +FEP Sbjct: 292 MITSYT-KLLERRYKDKLDSNANEYIAFAVDGAMRMQQLINDLLAYSRVTSRCR--NFEP 348 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TP 720 V+ E + +++ E I +++P ++AD + Q+ N++ NA+ F Sbjct: 349 VNCTEVFNRVAKNLKIAIEESGAAIT---QDHLPVVMADPSQLTQLFQNLIGNALKFRGE 405 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + ++ IS +E + V D G+G+ ++ F ++ + G+G+GL + Sbjct: 406 APPRVHISAEKKESEWI-FSVSDNGIGIDPQYYDRIFIVFQRLHG--KEDYPGSGIGLSI 462 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +V+ + G+ ++ S P KG P+ + Sbjct: 463 CKKIVERHSGRIWLKSEPGKGATFYFSLPVRN 494 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 63/241 (26%), Gaps = 9/241 (3%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLK 138 R D G ++ ++ K G + IG + + + + Sbjct: 25 EHGSRSVIVTDVKGCIQYVNPAFVKITGYAKEEAIGKNPRILKSGETPQGQYKQLWETIV 84 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 N W G+ G +V ++ P+ + + F I Sbjct: 85 SGNEWEGEFHNRKKTGEYYWVFATIS--PMKNEEGAITHF--VAIQREITERKRKEVRFN 140 Query: 199 RLDK--KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 K + + ++G + + + + Y +D LK Sbjct: 141 AFVKNTADALIAIDEQGVVELFNPAAEKMFGYKKEEVVGENVIMLMPESYRKKHEDGLKR 200 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + P + + + + + G + E F ++ + + + Sbjct: 201 YLNTGKARILGTGPIELEALRKDGTAFPIELTIGDAR--LDEYFTFIGIIRDITERKWAE 258 Query: 317 E 317 + Sbjct: 259 Q 259 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 62/263 (23%), Gaps = 27/263 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 ID G ++ + K G +++G + + + + + L T Sbjct: 153 IDEQGVVELFNPAAEKMFGYKKEEVVGENVIMLMPESYRKKHEDGLKRYLNTGKARILGT 212 Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +GT + + + F G I+ + Sbjct: 213 GPIELEALRKDGTAFPIELTI-GDARLDEYFTFIG-----IIRDITERKWAEQKLIHSME 266 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + S + + + V + + Y + +K Sbjct: 267 ELSRSNAELQQFAYVASHDL---------------QEPLRMITSYTKLLERRYKDKLDSN 311 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 +E + L T + + E N + + E+ Sbjct: 312 ANEYIAFAVDGAMRMQQLINDLLAYSRVTSRCRNFEPVNCTEVFNRVAKNLKIAIEESGA 371 Query: 323 PETVDKCPIPFFVYSHGNLFYAN 345 T D P+ S + N Sbjct: 372 AITQDHLPVVMADPSQLTQLFQN 394 >gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas haloplanktis ANT/505] Length = 892 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 23/395 (5%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495 + + + +++ M SIL + S I + G+I N A KL GY +D++ K Sbjct: 365 ESEVKQRTQEIADMNMLQQSILNSASYSIIATDTNGLITLFNPASEKLLGYKAQDVIGIK 424 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLR 542 +F + L+ L+ + E + + + + Sbjct: 425 NPGIFHLKEEIIKKAKLLSAELNKPVTPGFEVFILKATATEPDINQWTYISSTGEQIQVN 484 Query: 543 IIIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + L + Y +D++E + L H+K++AE+ S KS+FLA +SHEIRT Sbjct: 485 LSVTSLLNNEGDTVGYLGIAYDLTEQIDHEQALGHSKELAEQASQAKSEFLANMSHEIRT 544 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ I+G ++++ Q N + EY S + I+ND+LD SKIE+GK++L Sbjct: 545 PMNGILGTLQLLQEQPL----NEKSKEYLKKSLYSTRALTTIINDILDFSKIEAGKLSLE 600 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 +P E + S + + A +K I ++ + D ++Q+ LN++SNAI F Sbjct: 601 HKPFDFFELIHHLESDLGVQATDKNIYLKFVIDIEHKHWVGDPVRLRQVFLNLISNAIKF 660 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T GG + ++ T + + DTG+G++ +++ + F Q S GTGLGL Sbjct: 661 TSQGG-VTVTFRLTDESRICCCISDTGIGISEQAIDRLFERFEQAEQSTTREYGGTGLGL 719 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 P+ K+++ G+ + S G+ + PL Sbjct: 720 PITKSLIGLMNGEIKVTSQLGSGSQFYVYLPLKQA 754 Score = 41.6 bits (96), Expect = 0.58, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 17/152 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDL----------- 136 D +G + + K +G A +IG++ + + I + Sbjct: 396 TDTNGLITLFNPASEKLLGYKAQDVIGIKNPGIFHLKEEIIKKAKLLSAELNKPVTPGFE 455 Query: 137 ---LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 LK T I T + ++L+ + + + G+ G I + D Sbjct: 456 VFILKATATEPDINQWTYISSTGEQIQVNLSVTSLLNNEGDTVGYLG--IAYDLTEQIDH 513 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + + K + + Sbjct: 514 EQALGHSKELAEQASQAKSEFLANMSHEIRTP 545 >gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 792 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 192/501 (38%), Gaps = 19/501 (3%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D P ++ G L + N + T + A L P Sbjct: 13 PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 69 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + A + + + ++ + N + G Sbjct: 70 LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 125 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +TR+ + + + ++++A++ I +G ++ + + G E Sbjct: 126 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 185 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + + + + E + E +E + + + Sbjct: 186 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSI 243 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+ K+ + + HA+ AE + KS FLA +SHE+RTPL+A+IG+SE + Sbjct: 244 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 302 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + LG + I+ S +L ++ND+LDISKIE+G++ L E + + + Sbjct: 303 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 362 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + Q +KR R F ++ + D ++Q +N++ NA F+ G +II+ Sbjct: 363 TAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIILGVRR 421 Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V DTG+G+T ++ + + F Q S + GTGLGL + +A V+ Sbjct: 422 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 481 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + ST +G I P Sbjct: 482 GGTIGVESTFGEGATFTIRLP 502 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 T Q+ + + F + W +A G L + G +M Sbjct: 2 TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 57 Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + H++ + +W L +G Y A P+ + Sbjct: 58 DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 115 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 R +G + +++F L + + ++ Q Sbjct: 116 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 173 Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + + D E + + + + + Sbjct: 174 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 233 Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313 + E++ + Sbjct: 234 VPVLAEDGSIREWVGLNIDITARK 257 >gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium sp. BNC1] gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans sp. BNC1] Length = 774 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 126/510 (24%), Positives = 232/510 (45%), Gaps = 38/510 (7%) Query: 331 IPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 + + Y + S + Y++ D + G +++LL ++ Sbjct: 265 CGLWDWDMARGKMYWSASMYEMLGYEAADVMLSFGDVASLLHPDDSDLFAVANRIVAREV 324 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 ++ ++ ++ + + PE + GI + + R ++ E Sbjct: 325 EQVD-----QVFRMRHANGQWIWIRARAQVVDPDAPE-IHLIGIAVDVTEQRTLVQQSEA 378 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508 +L + +E ++ + + ++ N + G +I+ P + + Sbjct: 379 ADQRLRTAIENITESFVLWDASERLVMCNSRYLQDTGLDPSEIVPGLPRQEIESRMKATR 438 Query: 509 MNHYLTEILSLDLRQTLEKIT---------LGSTKEEKLLSLRIIIKKL--------PFS 551 LT + T E+ T++ +S+ I +L Sbjct: 439 YERRLTGSNNASEGITYERQLADGRWLQVTELKTRDGGTVSVGTDITQLKQHQEKLVESE 498 Query: 552 SCYSLTMHDISEWKQEKNK-----------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 T+HD+S ++ + + + AE + KS+FLA +SHE+RTPL Sbjct: 499 RRLMATIHDLSLARRAEQERGQELVELNRKYMRETERAESANRAKSEFLANMSHELRTPL 558 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFSE+++ FGPLG+ RY EY N I SG +L ++ND+LD+SKIE+G+ ++H E Sbjct: 559 NAIIGFSELMQQGLFGPLGSERYQEYVNDIYSSGTYLLGVINDILDMSKIEAGQFSIHRE 618 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 + L E + E + +V L A +K I + + ++ + AD R+VKQI +N+L NA+ FT Sbjct: 619 SIDLSEVIRETMRVVTLQAGKKNIELTSDVPASL-SLHADRRAVKQILINLLFNAVKFTG 677 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG++ + SN ++L ++DTG G+ L+K +PF Q+ N G+GLGL + Sbjct: 678 QGGRVTLRARVVSN-SLMLTIKDTGCGIPREALKKLGRPFEQVENQYSRSHNGSGLGLAI 736 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++++ + + G I ST GT++ I P+ Sbjct: 737 SRSLTELHGGALRIRSTEGVGTIVSIRLPV 766 Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats. Identities = 26/268 (9%), Positives = 60/268 (22%), Gaps = 12/268 (4%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTTLWPIEG 154 S + + +G A ++ + DV+ +LH D ++ + + Sbjct: 278 YWSASMYEMLGYEAADVM-LSFGDVASLLHPDDSDLFAVANRIVAREVEQVDQVFRMRHA 336 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 ++ I A + + G + + D++ E Sbjct: 337 NGQWIWIRARAQ-VVDPDAPEIHLIGIAV--DVTEQRTLVQQSEAADQRLRTAIENITES 393 Query: 215 SSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + S L V L + L S +S Sbjct: 394 FVLWDASERLVMCNSRYLQDTGLDPSEIVPGLPRQEIESRMKATRYERRLTGSNNASEGI 453 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD-KCP 330 + + + ++ S + + L D Sbjct: 454 TYERQLADG--RWLQVTELKTRDGGTVSVGTDITQLKQHQEKLVESERRLMATIHDLSLA 511 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVD 358 L N ++ T+ Sbjct: 512 RRAEQERGQELVELNRKYMRETERAESA 539 >gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein [Campylobacterales bacterium GD 1] Length = 798 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 172/362 (47%), Gaps = 10/362 (2%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+ I +++ + N +KL GY ++I+ K + + + L + Sbjct: 300 LDIAQVLIMVLDNNKNVTMINTEGAKLLGYSKDEIIGKNWIENFLPKNIQLEINELASDI 359 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573 + + TK +L + L + DI+E K+ +L+ Sbjct: 360 IEEKEKYPNYENYVLTKSGELKLILWKYSTLFDDQGNTIGLLTSGQDITEQKRTYLELNK 419 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK AEK + KS+FLA +SHEIRTPL I+GF ++ + + E I S Sbjct: 420 AKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLLYKDE----KDIKKQEKLKIIKDS 475 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++DIVND+LD SKIESG +++ P ++ +A+S+ I L + A EK I I+ S + Sbjct: 476 SYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAKEKNITIKLSIDDK 535 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNY 751 IP+ I D+ KQ+ N+LSNA+ F+ + ++ + N E+ V D+GVG++ Sbjct: 536 IPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIYCEVLDSGVGISPS 595 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + + + F Q +S + GTGLGL + K +V+ GK + S G+ P+ Sbjct: 596 KTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSELGVGSTFYFTLPII 655 Query: 812 DT 813 + Sbjct: 656 EA 657 >gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 769 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 138/692 (19%), Positives = 260/692 (37%), Gaps = 71/692 (10%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 G+V ++R + L L H V I ++ + N+ Sbjct: 90 IGVVRLDRPASI-ERLQNLLPGLIPTWGIAPGRHVIVTSADQRILARVPIGTEPSVDNRF 148 Query: 241 SS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 L K + L S+L ++ ++ G+L + Sbjct: 149 LEILGAASLTKSGQQSSISEITLPGGASALATMHVVKSLPGQVVIIQEDTGSLLRSDTAL 208 Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340 L D + +++ + + G Sbjct: 209 QVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGR 268 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + + S + +S +D+ G ++ L+ + +M Sbjct: 269 I-FWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFAIADELMA----GRVDHID-HS 322 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + + + GI + + + + ++L +E Sbjct: 323 FQMRHAHGHWIWLRMRCELTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIET 382 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519 + + + E ++ N +L P + + LE + T + Sbjct: 383 IPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEVGRMPQLR---TRLCDN 439 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574 + + L + ++ Y DI+ K + KL Sbjct: 440 GAVMPGARTFEAQLDDGSWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLR 496 Query: 575 ------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K+ AE+ + KS FLA +SHE+RTPL AII Sbjct: 497 ATVADLKITQSKLEKQALELADLARKYADEKRRAEEANQTKSKFLANMSHELRTPLNAII 556 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+G+M L EP+ L Sbjct: 557 GFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDL 616 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + E++ +V A K + +R+ + IP I+AD R++KQI +N+LSNA+ FTP G+ Sbjct: 617 AKTIGESVKVVAGRAEHKHLELRSELNDQIP-IVADRRAIKQILINLLSNAVKFTPDAGR 675 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + H + ++L + DTG+G+ L + +PF Q+ + G+GLGL +AK++ Sbjct: 676 VTVR-GHVAGGSIVLMIADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSL 734 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 V+ + G + ST GT++ + P P Sbjct: 735 VNLHGGSMRLRSTLGAGTVVMVSLPRTCQQRP 766 >gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 959 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 139/790 (17%), Positives = 256/790 (32%), Gaps = 102/790 (12%) Query: 70 SENTFVFDPIPRTVRFTWNI-------------DAHGYLKEISEELPKTIGNYAFKMIGM 116 + FD I R+ +F W I + G +S ++ G++ K + Sbjct: 88 IQGDISFDDIERSEKFLWRIIQLFENVYAVYIGNEQGQFIYVSR---ESDGSFRAKSVEE 144 Query: 117 RLCDVSDILHIDPNNHIGDLLK------RQNTWYGKTTLWPIEG-------TNLYVPIDL 163 + I P GD R WY KT N + I Sbjct: 145 SPNRL--YYMITPEGARGDFYNQTIYDPRIRPWYTKTLALNAPNWSPIYAFPNGKLGITA 202 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 + P+ + G G V L D VE Sbjct: 203 S-HPLSDSQGQLIGVIGVDFV-----------LTLINDFLGGLEVSPNGEVFIVESSGLL 250 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + S + PP+ DD ++ + + + + N Sbjct: 251 VASSTNFPPYTM---------------DDQNVAQRLHISQVNHPIISGTAAYFSQNFEHL 295 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 ++ + ++L + V P F G + + Sbjct: 296 SQIKTSHQSSFYINGEKQFLDVVRYQDKWGLNWL-------IVVVMPESDF---MGRINH 345 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N + ++ G + A +++ + + + + Sbjct: 346 -NAKITFMLSLVALAITICIG----IFMASRVTRPIVNLNKAARKFAQGDWEHTVHISRC 400 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 Q E + + + + F E QN + R++ L LEA Sbjct: 401 QEVGELAESFNQMAAQIRQSFSELEAQNSLSEALN------RQLSDREYWLKQFLEALPV 454 Query: 464 GIAIINREGIILSTNR------AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEI 516 G+ + ++ G I N+ + +E+ + L Sbjct: 455 GVLVYDKHGKIYYANQKLKKLFRAEHIPEVSLEEFAEINHLYLSSTDQLYPTKALPLVRA 514 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHA 574 L + SL DI++ +Q + + + Sbjct: 515 LKGKTVPIENIEIRHPD-QTICCSLMATPIFDSEEDIVYGIGVFEDITQRRQAEIERQNF 573 Query: 575 KKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K ++++ K +FLA SHE+RTPL +IG SE + + GPL + Sbjct: 574 TKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESMLDGVAGPLT-ELQRQNL 632 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I +SG+ + +VND+LD SK+ + L +P+ L E V + L + K I + Sbjct: 633 SMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVEVVVVLSKPLIGNKDIELI 692 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRD 743 ++ P + AD ++QI N++ NAI FT SG + I+ + N ++ + D Sbjct: 693 NEIPDDFPAVNADENRLQQILYNLIGNAIKFTDSG-TVKITASVLDTDANNSMAVINISD 751 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + + + F Q S + GTGLGL + K +V+ + GK ++ S G+ Sbjct: 752 TGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVELHQGKIWLDSVVGSGST 811 Query: 804 IEIIFPLYDT 813 P+ + Sbjct: 812 FSFTLPISEE 821 >gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1156 Score = 355 bits (911), Expect = 2e-95, Method: Composition-based stats. Identities = 97/550 (17%), Positives = 206/550 (37%), Gaps = 52/550 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 R + V+ P+ + + + + +K+ + + Sbjct: 125 EIRERKTAETELQHTLQRLTFHVENSPLAVIEWDSHHRVQRWSQQAEQIFGWKAEEALGR 184 Query: 363 AGGLSTL-LDAPKLSDNNAIKPV------------MLYRSDRTCIAASARLHTIQWNREN 409 L + + N + + Y + + I ++ + +N Sbjct: 185 QIDELQLVFTEDRDAVNVVMTNLLDGSTPRSICCNRNYTKEGSVIDCEWYNSALRDDADN 244 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--------RKMEIEVMQLCSILEAT 461 +++ + + ++ + E + + +E E QL I+ Sbjct: 245 LVSILSLALDITSRKQAETALKQVNVELEHRVEERTTQLQQLNQHLEQERQQLRQIITVA 304 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +A+ +R+ L+ ++ ++ + ++ + P L ++ Sbjct: 305 PVAMAMFDRQMRYLAHSQQWLTIYSLDEQSLINRCHYDIF-PELPEPWREAHQRALQGEI 363 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 E + + + I L I+E + + Sbjct: 364 ITKSED--VWQRADGTTIYEHWAIHPWYTSTGDVGGIVLACFPINELVEA-------RDA 414 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + KS FLA +SHEIRTP+ ++G ++ NP+ + Y I+ + Sbjct: 415 ALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDL----NPQQLNYTRTIESCAKHL 470 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L ++ND+LD+SK+E+GKM L SLD + I ++ + A K + + +N+P + Sbjct: 471 LTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNVPRQ 530 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGV 746 + +D ++QI LN++ NAI FT +G ++++ + ++ + V DTG+ Sbjct: 531 LQSDPGRLRQILLNLVGNAIKFTDAG-EVVVRVAVSRHQPTDTLSQSSVTLRFSVTDTGI 589 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + K + F Q+ S R GTGLGL + + +V+ GK + S +G+ Sbjct: 590 GISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKVGQGSTFWF 649 Query: 807 IFPLYDTSHP 816 P+ P Sbjct: 650 TVPVKTQPLP 659 Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 55/160 (34%), Gaps = 7/160 (4%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + E + + + +++ + +L +E + + + + ++ ++FG+ E+ Sbjct: 122 LAQEIRERKTAETELQHTLQRLTFHVENSPLAVIEWDSHHRVQRWSQQAEQIFGWKAEEA 181 Query: 493 LRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 L + + +N +T +L +++ TKE ++ L Sbjct: 182 LGRQIDELQLVFTEDRDAVNVVMTNLLDGSTPRSICC-NRNYTKEGSVIDCEWYNSALRD 240 Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + DI+ KQ + L E ++ Sbjct: 241 DADNLVSILSLALDITSRKQAETALKQVNVELEHRVEERT 280 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 39/439 (8%), Positives = 116/439 (26%), Gaps = 24/439 (5%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 + + T + F + W D+H ++ S++ + G A + +G + Sbjct: 128 ERKTAETELQHTLQRLTFHVENSPLAVIEW--DSHHRVQRWSQQAEQIFGWKAEEALGRQ 185 Query: 118 LCD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 + + + D N + L +T + + + Sbjct: 186 IDELQLVFTEDRDAVNVVMTNLLDGSTPRSICCNRNYTKEGSVIDCEWYNSALRDDADNL 245 Query: 176 SGFRGFGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQS 229 + K L+ + + + +++ Sbjct: 246 VSILSLAL--DITSRKQAETALKQVNVELEHRVEERTTQLQQLNQHLEQERQQLRQIITV 303 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 P + M ++ + + ++ L+ + + +Q + Sbjct: 304 APVAMAMFDRQMRYLAHSQQWLTIYSLDEQSLINRCHYDIFPELPEPWREAHQRALQGEI 363 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP--- 346 T + + + + H ++ ++ ++ + PI V + Sbjct: 364 ITKSEDVWQRADGTTIYEHWAIHPWYTSTGDVGGIVLACFPINELVEARDAALATARLKS 423 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 FL ++ I G+ LL L+ + + + + + Sbjct: 424 KFLANMSHEIRTPINGVLGMMRLLLQTDLNPQQLNYTRTIESCAKHLLTVINDILDVSKL 483 Query: 407 RENSLAMTFIP-------FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-L 458 + + I + G+E + R+++ + +L I L Sbjct: 484 EAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNVPRQLQSDPGRLRQILL 543 Query: 459 EATSDGIAIINREGIILST 477 + I + +++ Sbjct: 544 NLVGNAIKFTDAGEVVVRV 562 >gi|302039214|ref|YP_003799536.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii] gi|300607278|emb|CBK43611.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii] Length = 892 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 117/739 (15%), Positives = 248/739 (33%), Gaps = 47/739 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG-- 145 +D + ++ K A +++G L + + HI + + T Sbjct: 181 VDEAHKIVLFNQAAEKMFQWGAEEVLGRPLDRLLPERFRSAHDEHIREFGRSGITTRQMG 240 Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203 + + PI+ A I G R + ++ + Sbjct: 241 ALGMVMGVRANGEEFPIEAAISQIG-----VEGTRYYTVILRDITERIRLEQELAEREAL 295 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + E + + I + + + + + + Sbjct: 296 LRAIIETEPECVKLLNLDGTIRTINAAGLAMIEATSGADVIGRDACRLVTDEFRSVYREL 355 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYF 315 + + + + + L++ L + A Sbjct: 356 VGKAGRGEAGRLEFEMVGLLGTHRWLDTHVVPLRSADGTVTAVLGVTRDVTEWKKTEALL 415 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E+ + P V G + + N + L +S ++I L P Sbjct: 416 RQSEDRYRRLLAVLPDAILVNREGRIIFTNEQGVRLFGARSGEEILGKSLYD--LAHPDY 473 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + L R + ++ + +++ Q E + Sbjct: 474 HELIGERIRHLLR-PGNTVP-EVEEKIVRLDG---VSVDVAVRAARFQDEEGFGILVVLR 528 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR 494 + + ++K+ +L S+L A D I + + + + +V +++G P + L Sbjct: 529 DISMRKAAEQKLRESEERLQSLLGAMEDVIWSSSLDLSTMFYVSPSVMEIYGRPTDAFLA 588 Query: 495 KP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 +P + V+ + LS +E + + + L R + K Sbjct: 589 RPSLWLEAVHPDDRVIAEQARQALSTMGEFDVEYRIVRLDGDLRWLHDRGRVIKDAEGRP 648 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 DI+E K+ + +L +++AE + + ++HEI TP+ I+G +E + Sbjct: 649 LRIDGIASDITERKRLQAQLRRTERVAELGTVA-----SGMAHEIGTPMNVILGRAEYLM 703 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + I + ++N LL ++ + + + L + + + Sbjct: 704 ER----TKEEPVRKGLQTIVSQVERITRVMNQLLAFAR----RRPVEHRALDLRQTIEDN 755 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + Q + I + TSFA+ P + AD + Q+ +N++ NAIH P GG + ++ T Sbjct: 756 LEIFQERLSHSNISVETSFADACPLVHADADQMSQVLINLVMNAIHAMPGGGLLKLALTP 815 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V L V DTG GM + K PF G+GTGLGL + K +++ + G Sbjct: 816 -DRGMVRLTVADTGHGMPRDVIAKVFDPFFTTK----EFGKGTGLGLTVVKGIIEEHSGT 870 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S P +GT I P+ Sbjct: 871 IEVESEPERGTTFTICLPI 889 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 7/179 (3%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIA 466 + A P E + + + E+ +L I+ + D I Sbjct: 120 TARAERHQPEAIGASDAEARARAEAAVVGAVDGQRRAEAELHQDKLRFEGIVHSAMDAII 179 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525 ++ I+ N+A K+F + E++L +P L + S + ++ E + Sbjct: 180 TVDEAHKIVLFNQAAEKMFQWGAEEVLGRPLDRLLPERFRSAHDEHIREFGRSGITTRQM 239 Query: 526 --EKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + +G + + I ++ + Y++ + DI+E + + +L+ + + Sbjct: 240 GALGMVMGVRANGEEFPIEAAISQIGVEGTRYYTVILRDITERIRLEQELAEREALLRA 298 >gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 865 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 113/566 (19%), Positives = 221/566 (39%), Gaps = 37/566 (6%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------- 323 ++ + + + N+ + + + S +E Sbjct: 166 DEFRIVWPDKSIHWIAAKGRFFYNDQGQPVRMIGVCMDITKSKRTEENNRQLATQVQEQA 225 Query: 324 ----ETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + +++ G+ Y + + I + L +L D Sbjct: 226 NVLNAILATSVDHIYIFNRTGHYQYVSHGGAAVLGLYPQQMIGKT--VQELNLPQELIDK 283 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + ++ + + ++ P + E + + Sbjct: 284 VNGQFLAVMKA---GKPVKDECEYVAADGKHYYEYILTPLRNIDHNIE--GVITVSRDMT 338 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRK 495 + + ++ + + + E+ G+A N +G I N A +L GY E + + Sbjct: 339 EHKRAEQSIRNSEARFRRLFESNLIGVAFWNVDGFITDANDAYLQLVGYTREQFNTLGKI 398 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + + + E+ + + + EK + + L I + + Sbjct: 399 NWRELTPPDYKHLDDRAIAEVKTNGISRIYEKQYIQRNGRRVSIVLGIALLDDSDEQGVA 458 Query: 556 LTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + DISE K + + A+K AE + K +FLA +SHE+RTPL I+G+S+ Sbjct: 459 FVL-DISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSK 517 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++++++F R I+R+ L ++ DLLD+S+I GK++L+ PVSL + Sbjct: 518 LLRSRQFDAATTDRA---LETIERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVI 574 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 AI V+L A K I I+ F N+ +++ D ++Q+ N+LSNA+ FT GG + I Sbjct: 575 GAAIDTVRLAAEAKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIH 634 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 N++ ++V DTG G+T L F Q + G GLGL + + +V+ + Sbjct: 635 LKAV-NDQAQIQVIDTGKGITPEFLPYVFDYFRQADGTTTRNFGGLGLGLAIVRQVVELH 693 Query: 789 MGKFYIFSTPAK--GTLIEIIFPLYD 812 G S P G + PL Sbjct: 694 GGTVQAKS-PGDGLGATFTVNLPLSP 718 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 38/377 (10%), Positives = 98/377 (25%), Gaps = 35/377 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLW 150 G+ + +S +G Y +MIG + +++ + N ++K + Sbjct: 246 GHYQYVSHGGAAVLGLYPQQMIGKTVQELNLPQELIDKVNGQFLAVMKAGKPVKDECEYV 305 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G + Y + P+ + + G + + + +F L E Sbjct: 306 AADGKHYY---EYILTPLRNIDHNIEGV--ITVSRDMTEHKRAEQSIRNSEARFRRLFES 360 Query: 211 KKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + I N + + D + + + Sbjct: 361 NLIGVAFWNVDGFITDANDAYLQLVGYTREQFNTLGKINWRELTPPDYKHLDDRAIAEVK 420 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + I N G + + ++ S ++ Sbjct: 421 TNGISRIYEKQYIQRNGRRVSIVLG-IALLDDSDEQGVAFVLDISERKLAEQQR------ 473 Query: 326 VDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D+ + AN FL + ++ + G S LL + + + Sbjct: 474 -DRLLCAERIARKDA-EIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDR 531 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + I +A L T + + P + Sbjct: 532 AL-------ETIERNATLQTQLIED----LLDVSRILQGKLSLNICPVSLPIVIGAAIDT 580 Query: 443 NKRKMEIEVMQLCSILE 459 + E + +++ ++ + Sbjct: 581 VRLAAEAKEIKIQNVFD 597 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 22/216 (10%), Positives = 57/216 (26%), Gaps = 4/216 (1%) Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + L + ++ L + + L I E + ++ E Sbjct: 19 RQRIAELEQLEKQYQHKQVELERHIEDLQAKLRTLHITNVDIESHLEPVTLQRLQQEISQ 78 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPF 497 + + + L+A + G N + + +LFG + F Sbjct: 79 RQQVDAALTESEERWRLALDAANLGFWDWNVLTAKVVWSENHERLFGLVSGSFDGTYETF 138 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 + + + L E + K ++ + Sbjct: 139 LSCVHPEDRESVIQVIGVCLENKTDYYDEFRIVWPDKSIHWIAAKGRFFYNDQGQPVRMI 198 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 DI++ K+ + +++++ + LA Sbjct: 199 GVCMDITKSKRTEENNRQLATQVQEQANVLNAILAT 234 Score = 45.0 bits (105), Expect = 0.050, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 104/338 (30%), Gaps = 25/338 (7%) Query: 69 DSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM--IGM-RLCDVSD 123 +SE F F+ V F WN+D G++ + ++ + +G + +G +++ Sbjct: 349 NSEARFRRLFESNLIGVAF-WNVD--GFITDANDAYLQLVGYTREQFNTLGKINWRELTP 405 Query: 124 ILH--IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 + +D + I ++ + + G V I L + + + E +G Sbjct: 406 PDYKHLD-DRAIAEVKTNGISRIYEKQYIQRNGR--RVSIVL-GIALLDDSDE----QGV 457 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NK 239 V RL + + + ++ E + S + P + +K Sbjct: 458 AFVLDISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSK 517 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + ++ A D T + + + D I + + +L + Sbjct: 518 LLRSRQFDAATTDRALETIERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAA 577 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETV---DKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 + + + + + + ++ + + + +P + K+ Sbjct: 578 IDTVRLAAEAKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKA 637 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 V+D + T + ++D T Sbjct: 638 VNDQAQIQVIDT--GKGITPEFLPYVFDYFRQADGTTT 673 >gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 608 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 83/371 (22%), Positives = 158/371 (42%), Gaps = 27/371 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L SIL +DG+ + G ++ NR ++ E KP + L + Sbjct: 259 EEEKEKLSSILANMNDGVIATDDSGRVIVMNRRAKQILQVKEEQWFGKPLSRLLGIS--- 315 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 +TE + L E+ + + + D++E + Sbjct: 316 --QEIVTEYSQHENTTLL--ELKLDEDEKIWVRVTFTPIHRRGEGITGSIAVLQDVTEQE 371 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + +F+A VSHE+RTPLT I + E + + G + +P+ E Sbjct: 372 KLE--------------RSRKEFVANVSHELRTPLTTIKSYLEALGD---GAIEDPQLSE 414 Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + ++ +V DLL +S+++S + L P ++ + + E + + +++I Sbjct: 415 RFLGVTRNETERMIRLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKI 474 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I S + I D + Q+ N+LSNAI +T G + I ++ V + V DT Sbjct: 475 RIDVSVDARVGSISIDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDT 534 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L + + F ++ ++ GTGLGL +A+ +V A+ G + S GT + Sbjct: 535 GIGIPKKDLSRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRV 594 Query: 805 EIIFPLYDTSH 815 P++ Sbjct: 595 SFTLPVHHEEE 605 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 28/300 (9%), Positives = 77/300 (25%), Gaps = 21/300 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ + + + G L + +++ + T Sbjct: 279 TDDSGRVIVMNRRAKQILQVKEEQWFGKPLSRLL--------GISQEIVTEYSQHENTTL 330 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + + + + PI+ R +G ++ K SH Sbjct: 331 LELKLDEDEKIWVRVTFTPIHRRGEGITG--SIAVLQDVTEQEKLERSRKEFVANVSHEL 388 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E + + P ++ + +T + L T+ L + + Sbjct: 389 RTPLTTIKSYLEALGDGAIEDP----QLSERFLGVTRNETERMIRLVTDLLHLSRLDSNQ 444 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + I+ ++ S++ + + + + + + + Sbjct: 445 ATLVKTPTNISD---MLEEVADRFAVQSRQRKIRIDVSVDARVGSISIDRDKIDQVLDNL 501 Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPV 384 + G + SV+D LS + + D + + Sbjct: 502 LSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGIGIPKKDLSRIFERFYRVDKARSRNM 561 Score = 38.1 bits (87), Expect = 6.0, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 44/182 (24%), Gaps = 23/182 (12%) Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 +E + + G + N + + K LS LL + Sbjct: 259 EEEKEKLSSILANMNDGVIATDDSGRVIVMNRRAKQILQVKEEQWFGKP--LSRLLGISQ 316 Query: 375 L-----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 S + + L + I I E + + Q Sbjct: 317 EIVTEYSQHENTTLLELKLDEDEKIWVRVTFTPIHRRGEGITGSIAVLQDVTEQEKLERS 376 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + ++ + + S LEA DG AI + + + G Sbjct: 377 RKEFVANVSH------ELRTPLTTIKSYLEALGDG-AIEDPQL--------SERFLGVTR 421 Query: 490 ED 491 + Sbjct: 422 NE 423 >gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009] gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris CGA009] Length = 779 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 138/692 (19%), Positives = 260/692 (37%), Gaps = 71/692 (10%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 G+V ++R + L L H V I ++ + N+ Sbjct: 100 IGVVRLDRPASI-ERLQNLLPGLIPTWGIAPGRHVIVTSADQRILARVPIGTEPSVDNRF 158 Query: 241 SS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 L K + L S+L ++ ++ G+L + Sbjct: 159 LEILGAASLTKSGQQSSISEITLPGGASALATMHVVKSLPGQVVIIQEDTGSLLRSDTAL 218 Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340 L D + +++ + + G Sbjct: 219 QVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGR 278 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + + S + +S +D+ G ++ L+ + +M Sbjct: 279 I-FWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFAIADELMA----GRVDHID-HS 332 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + + + GI + + + + ++L +E Sbjct: 333 FQMRHAHGHWIWLRMRCELTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIET 392 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519 + + + E ++ N +L P + + LE + T + Sbjct: 393 IPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEVGRMPQLR---TRLCDN 449 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574 + + L + ++ Y DI+ K + KL Sbjct: 450 GAVMPGARTFEAQLDDGSWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLR 506 Query: 575 ------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K+ AE+ + KS FLA +SHE+RTPL AII Sbjct: 507 ATVADLKITQSKLEKQALELADLARKYADEKRRAEEANQTKSKFLANMSHELRTPLNAII 566 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+G+M L EP+ L Sbjct: 567 GFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDL 626 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + E++ +V A K + +R+ + IP I+AD R++KQI +N+LSNA+ FTP G+ Sbjct: 627 AKTIGESVKVVAGRAEHKHLELRSELNDQIP-IVADRRAIKQILINLLSNAVKFTPDAGR 685 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + H + ++L + DTG+G+ L + +PF Q+ + G+GLGL +AK++ Sbjct: 686 VTVR-GHLAGGSIVLMIADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSL 744 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 V+ + G + ST GT++ + P P Sbjct: 745 VNLHGGSMRLRSTLGAGTVVMVSLPRTCQQRP 776 >gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium sp. ORS278] Length = 610 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 118/419 (28%), Positives = 191/419 (45%), Gaps = 17/419 (4%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E + A+ D R + + +E + + SD I+ Sbjct: 160 ETNPALRTSLLAFGVASATLYAAVLAFAADTLARTSVTLLSMEEERYRLLARNMSDVISR 219 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 R G ++ + AV L G PV + + L+E ++E Sbjct: 220 HRRNGAVMFISPAVETLLGAPVAQLHGHGLFERVHVADRPAYLTALSEAAGGSEASSVEF 279 Query: 528 ITLGSTKEEK--------LLSLRIIIKKLPF--------SSCYSLTMHDISEWKQEKNKL 571 E + + + + L M D+++ K ++ L Sbjct: 280 RLRRDAPGEGRAGQQSVDFIWVEMRCRPLDRAGVTCAGTDQEVVAVMRDVTDRKLQEQAL 339 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ AE+ + K+ FLA +SHE+RTPL AIIGFSE++ ++ L R EYA I+ Sbjct: 340 ELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVLVLNAARRREYAQLIN 399 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L +VN +LD+SK+ESG L EP + A+ +L+ L A E + + Sbjct: 400 DSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLALRARENGVDLAADAP 459 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +++P I D R+ KQI +N++SNAI FT GG++ +S ++LR+ DTGVG+ Sbjct: 460 HDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAGV-DGARLLLRITDTGVGIAAD 518 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L++ PF Q + Q R EGTGLGL + K++V + G+ I S +GT + I P+ Sbjct: 519 DLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESKLDEGTTVTIALPI 577 Score = 38.1 bits (87), Expect = 6.3, Method: Composition-based stats. Identities = 9/147 (6%), Positives = 31/147 (21%), Gaps = 13/147 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 +G + IS + +G ++ G L + + + Sbjct: 222 RNGAVMFISPAVETLLGAPVAQLHGHGLFERVHVADRPAYLTALSEAAGGSEASSVEFRL 281 Query: 151 PIEGTNL---------YVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGK 198 + ++ +++ P+ R + ++ + Sbjct: 282 RRDAPGEGRAGQQSVDFIWVEMRCRPL-DRAGVTCAGTDQEVVAVMRDVTDRKLQEQALE 340 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 341 LARSAAERADAAKTRFLATMSHELRTP 367 >gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina MBIC11017] Length = 1076 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 127/684 (18%), Positives = 245/684 (35%), Gaps = 77/684 (11%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241 +V R + + L K + + + +S E Q M + + Sbjct: 134 LVREVRQGDRSQGLTKNSTARLQDMLDNVLLYSLSANEALVPQINQQMTQLEAMSHAEAN 193 Query: 242 --SLTEYYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 L AH +L+ + LT P E + + + Q N + Sbjct: 194 KEGLLLAIAHTRIILEYKPKVDQLTQTILQQPTSEAINQLEALYTKQHQSASQTANIFRL 253 Query: 299 S-----------FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346 YL R +L + + + F + + Y N Sbjct: 254 ISFGCLLIILGGTAYLVIRRQWALIQEQQQSQQRISGILSSITDAFITLNPEWQVVYINE 313 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 L D G+ + + + + I+ S + Sbjct: 314 KAAELFGQGLQD------GIHQNFWQTYPQELGLDHQENYHTALQDQISQSFEVFY---- 363 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILE 459 + + + F + + + ++ + + + L +++ Sbjct: 364 ANSQIWLEVRIFPSVDGLSLFL------QDITPRKLAEAHLVQMNEDLKTSQQLLRRVID 417 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + +REGI L N + G E ++ K P + + + Sbjct: 418 TIPQLLFWKDREGIYLDCNLQFATYVGLSQPEQVVGKTDADL--PWAPPELAAF--QASE 473 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN----- 569 + T E T + L I L + D++ +Q Sbjct: 474 QRILTTGEIETALLKRHNPDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADAKLRNV 533 Query: 570 --KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 +L AK A+ S KS+FLA +SHE+RTP+ A+IG + ++ + + + ++ Sbjct: 534 NAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSL----DAQQQDFV 589 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I SG+ +L ++ND+LD SKIE+GK+ + +P +L + EA+ LV A +K + I Sbjct: 590 DTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIA 649 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEE------ 736 ++P I+ D+ ++Q+ +N+L+N + FT +G I+ ++ E Sbjct: 650 YLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIVYVKEVTAEIQDREGSGSEGQ 709 Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V+DTG+G+ L + + F Q+ +S + GTGLGL ++K + + GK Sbjct: 710 SPRRLFQFAVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGK 769 Query: 792 FYIFSTPAKGTLIEIIF--PLYDT 813 ++ S G+ P+ DT Sbjct: 770 IWVDSEIGIGSTFTFTIAAPIADT 793 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 25/310 (8%), Positives = 62/310 (20%), Gaps = 29/310 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 ++ + I+E+ + G I +D + L+ Q + + Sbjct: 302 LNPEWQVVYINEKAAELFGQGLQDGIHQNFWQTYPQELGLDHQENYHTALQDQISQSFEV 361 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-------LGKRL 200 N + +++ P G F + A K Sbjct: 362 FY-----ANSQIWLEVRIFP------SVDGLSLF--LQDITPRKLAEAHLVQMNEDLKTS 408 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + + + + + + L +V T+ Sbjct: 409 QQLLRRVIDTIPQLLFWKDREGIYLDCNLQFATYVGLSQPEQVVGKTDADLPWAPPELAA 468 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ + + + L L + D Sbjct: 469 FQASEQRILTTGEIETALLKRHNPDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADA 528 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + FL ++ + G++ LL L Sbjct: 529 KLRNVNAELQTA-----KDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDA 583 Query: 378 NNAIKPVMLY 387 + Sbjct: 584 QQQDFVDTIR 593 >gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106] Length = 1259 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 133/753 (17%), Positives = 270/753 (35%), Gaps = 52/753 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGK 146 + G ++++ L + G +++ + ++ ++ + + I L+ + T+ + Sbjct: 282 VSLEGNFFKVNQSLCELTGYSEVELLSINFQSITFPQDLEIDLNYIKQLIAGEIRTYKME 341 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G V + L + + ++ F + ++ ++ + Sbjct: 342 KRYFHKNGEI--VWVLLNGSLVRNEQQQPLYF--IAQIQDISERKQSEKYLQKYERIIAA 397 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLT 263 + Y++ + + + ++V + + K+ Sbjct: 398 NSDAVC--LVDCNYTYNLANLAYLNWYHKSLDEVLGNQVSNVIGESLFEQVVKPKFEACL 455 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E E+ T N + + + + + + +E T Sbjct: 456 TGEIIQYERWFNDTDNSQRKFISITYTPYRELDHKITGIVVSIRDLTALKLTEESLRQTE 515 Query: 324 ETVDKCPIPF------FVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E + V Y + + ++ D I A + + Sbjct: 516 ERLQLIASNIPGVMYTIVEELDETWTFEYLSEGCHEVLGVEAKDAIANANQIMQRIHPED 575 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L + + + + + T + R + K + E + +G+ Sbjct: 576 LPKH--NQAATISKQNLTPFSEEWR---YILPSGQVRWILDNARPKRRENGETV-WHGVM 629 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D + + ++ +L LEA I + I + + + + Sbjct: 630 LDISDGKQAEIALQESQERLYRTLEAGR--IICWEEDLISQEVSGWGKNIADNWKANFWK 687 Query: 495 KPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 P + + +E G E+ + + Sbjct: 688 YPLEFAPEGIYFEDRDRAVEAKENAIKTKGEFQVEHRLTGF-PEKIWMLAKGKAVVNNDG 746 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DIS+ K + +L AK+ AE + KS FLA +SHE+R+PL AI+GF++V Sbjct: 747 EVTRVVGVAIDISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQV 806 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 I + N I RSG +L ++N++LD+SKIE+GK+ L EP L + + Sbjct: 807 I---NGSSNLTTQQQNNLNIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIE 863 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E L ++ A++K + + N+PR I D ++QI +N+LSNAI FT G + + Sbjct: 864 ELQDLFRIKASQKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQKG-TVCLE 922 Query: 729 TTHTSNE------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + ++ RV DTGVG+ E++ PF Q + Q + +GTGL Sbjct: 923 ADLSETSPVCLIGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQ-QGTGL 981 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL + K + GK + S P GT+ ++ P Sbjct: 982 GLAICKGYIKLFGGKIEVHSQPRVGTVFDLEMP 1014 Score = 117 bits (294), Expect = 6e-24, Method: Composition-based stats. Identities = 39/510 (7%), Positives = 126/510 (24%), Gaps = 35/510 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + + G ++ G + + N + Sbjct: 162 RYVSYNPAAERFSGFSTSEIQGKTANEFMPTAVANQVNQKFLTCLDAQESITFEEHLFFK 221 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G + L P+ + G + +++F + Sbjct: 222 GEERWFLTTL--TPLQDPQGNIK--QIIGTATNINDRKQAEQRLQESEERFRRAFDDAAI 277 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYPLLTSEESS 268 ++ + + F L ++V L + + ++ L+ E + Sbjct: 278 GKALVSLEGNFFKVNQSLCELTGYSEVELLSINFQSITFPQDLEIDLNYIKQLIAGEIRT 337 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++ + N ++N ++ +++ S ++ + Sbjct: 338 YKMEKRYFHKNGEIVWVLLNGSLVRNEQQQPLYFIAQIQDISERKQSEKYLQKYERIIAA 397 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL---STLLDAPKLSDNNAIKPV 384 + AN ++L + + +L + A Sbjct: 398 NSDAVCLVDCNYTYNLANLAYLNWYHKSLDEVLGNQVSNVIGESLFEQVVKPKFEA---- 453 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 I + ++ +++T+ P+ + + + + ++ + Sbjct: 454 ---CLTGEIIQYERWFNDTDNSQRKFISITYTPYRELDH--KITGIVVSIRDLTALKLTE 508 Query: 445 RKMEIEVMQLCSILEATSDGIAI-----INREGIILSTNRAVSKLFGYPVEDIL--RKPF 497 + +L I G+ ++ + ++ G +D + Sbjct: 509 ESLRQTEERLQLIASNIP-GVMYTIVEELDETWTFEYLSEGCHEVLGVEAKDAIANANQI 567 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---Y 554 + N +S + ++ + + + + Sbjct: 568 MQRIHPEDLPKHNQA--ATISKQNLTPFSEEWRYILPSGQVRWILDNARPKRRENGETVW 625 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 M DIS+ KQ + L +++ + Sbjct: 626 HGVMLDISDGKQAEIALQESQERLYRTLEA 655 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 89/295 (30%), Gaps = 18/295 (6%) Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTK 353 + S L+ E + FV NP+ + Sbjct: 116 ALALPSPTQLKQLNQELKEKTQFLQSIYEGVEQAIFVLDVVENGIFRYVSYNPAAERFSG 175 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + G + +++ K + + + I L Sbjct: 176 FSTSEI---QGKTANEFMPTAVANQVNQKFLTCLDAQES-ITFEEHLFFK----GEERWF 227 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + G D + +++++ + + + G A+++ EG Sbjct: 228 LTTLTPLQDPQGNIKQIIGTATNINDRKQAEQRLQESEERFRRAFDDAAIGKALVSLEGN 287 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 N+++ +L GY ++L F + +Y+ ++++ +T + Sbjct: 288 FFKVNQSLCELTGYSEVELLSINFQSITFPQDLEIDLNYIKQLIA-GEIRTYKMEKRYFH 346 Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 K +++ + + + + + DISE KQ + L ++I S Sbjct: 347 KNGEIVWVLLNGSLVRNEQQQPLYFIAQIQDISERKQSEKYLQKYERIIAANSDA 401 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 8/188 (4%) Query: 401 HTIQW-NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + I W + + A + +P P + ++++ + L SI E Sbjct: 85 YPIYWISGLTKALTAIVSIITAFKLISIIPLALALPSPTQLKQLNQELKEKTQFLQSIYE 144 Query: 460 ATSDGIAIIN--REG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 I +++ G +S N A + G+ +I K F+ + +N Sbjct: 145 GVEQAIFVLDVVENGIFRYVSYNPAAERFSGFSTSEIQGKTANEFMPTAVANQVNQKFLT 204 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 L T E+ EE+ + + P + T +I++ KQ + +L Sbjct: 205 CLDAQESITFEEHLFFK-GEERWFLTTLTPLQDPQGNIKQIIGTATNINDRKQAEQRLQE 263 Query: 574 AKKIAEKE 581 +++ + Sbjct: 264 SEERFRRA 271 >gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1127 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 106/590 (17%), Positives = 207/590 (35%), Gaps = 57/590 (9%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS--HRNHPSLSAYFDEG 318 L + L + +D + G + + + Sbjct: 181 LYRTLARPLTQLKDAVAAVTRGDLSYRISGQPPGELGLLASSFNKMIEARQRAESSVKDS 240 Query: 319 ENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + D P + + +G + Y N L +T Y+ + + + P+ Sbjct: 241 EARLKDVFDNLPMLTVCLEPNGAISYCNDYLLQITGYRRHE-LIGKNWFDLFIAEPEPLK 299 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + V ++I + + + I + Sbjct: 300 QVFNQMVT------KGEIVHHYQNSILTKSGVVRMVAWSNTLNHDNSGAISGVTSIGSDI 353 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++ +E L S+++ + + +++R +L N ++ + + Sbjct: 354 TAQHAAEQALEQSQRILRSLVDGNPESLYLVDRNATVLIANSTFARRLNKGLSQVTGSSL 413 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + + E+ S E L + S+ Sbjct: 414 DELFNPDVAQRRRARIEEVFSSGRPLIFNDAQDLWQFEHHLNPVS---TLDGGVESVSIL 470 Query: 558 MHDISEWKQEKNKLSHAKKIAEK--------------------------------ESSHK 585 D+++ + + L A ++ ++ S K Sbjct: 471 TIDVTDRLRNEENLQQANQLLKQNNEALEQRVAERTSELTRLNEELARARDTAEGASRSK 530 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHEIRTP+ AI+G + + EY + + S +L I+ND+L Sbjct: 531 SEFLANMSHEIRTPMNAILGLVHLALQTDLSH----KQREYLDTVSNSAQSLLGIINDIL 586 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D+SKIE+G++ + SL+ V+ ++L+ + A EK I + +IP ++ D + Sbjct: 587 DVSKIEAGRLQIEKTNFSLEGVVTRTLALLSIKAREKGINLEQQVDTSIPDALVGDPLRL 646 Query: 705 KQIALNILSNAIHFTPSGG---QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAM 757 +Q+ +N+L NA+ FT SG QI T ++ + + + DTG GM L + Sbjct: 647 EQVLVNLLGNAVKFTDSGTVTLQIRRGTEPRDSDSDEITLEISITDTGAGMDEQTLGRLF 706 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 KPF Q S GTGLGL + + +V+ G + S+P +G+ Sbjct: 707 KPFSQGDTSTTRTHGGTGLGLTICRHLVEMMGGTITVTSSPGQGSCFTFS 756 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 31/308 (10%), Positives = 80/308 (25%), Gaps = 12/308 (3%) Query: 46 HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105 SF + Q ES + ++ F + T ++ +G + ++ L + Sbjct: 220 ASSFNKMIEARQRAESSVKDSEARLKDVF----DNLPM-LTVCLEPNGAISYCNDYLLQI 274 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 G ++IG D+ I +P + + + + + + + + + Sbjct: 275 TGYRRHELIGKNWFDL-FIAEPEPLKQVFNQMVTKGEIVHHYQNSILTKSGVVRMVAWSN 333 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + + SG G + ++ + L + + + Sbjct: 334 TLNHDNSGAISGVTSIGS--DITAQHAAEQALEQSQRILRSLVDGNPESLYLVDRNATVL 391 Query: 226 SQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-EDFHTINLNQ 282 S K ++V+ + DV + + + S P D + + Sbjct: 392 IANSTFARRLNKGLSQVTGSSLDELFNPDVAQRRRARIEEVFSSGRPLIFNDAQDLWQFE 451 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342 + S + + + L + + L Sbjct: 452 HHLNPVSTLDGGVESVSILTIDVTDRLRNEENLQQANQLLKQNNEALEQRVA-ERTSELT 510 Query: 343 YANPSFLL 350 N Sbjct: 511 RLNEELAR 518 >gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str. Houston-1] gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str. Houston-1] Length = 773 Score = 355 bits (910), Expect = 3e-95, Method: Composition-based stats. Identities = 125/507 (24%), Positives = 225/507 (44%), Gaps = 53/507 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y D + ++ +++ + + + +M + I Sbjct: 285 VYWSRAMYEMLGYIPQDALLSISQITAIINPNDANFFDLAQELMSGKKKHIDINV----- 339 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M E + GI + + R + +++ +E Sbjct: 340 PMRHADGHYVWMRIRAEVTD---EEELHLVGIAFDISEQRQLAEETAQADLRIRDAIENI 396 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E +N Y + Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQVLQPGIQRATVEAMARPAINEYPLKDDGTG- 455 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 456 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 509 IQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ FGPLG+ RY EY + I SGN +L ++ND+LD+SKIE+G+ L + + L+ Sbjct: 569 SDIMLQSTFGPLGSQRYQEYMHDIYNSGNHLLTLINDILDMSKIEAGRFTLDRKNIDLEP 628 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SEA+ + A EK I + T+ A + D R++KQI LN++SNA+ FTPSGG I Sbjct: 629 IISEAVRTLTPQAQEKNISVSTNIAPEL-HAEVDGRAMKQIFLNLISNAVKFTPSGGSIN 687 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + ++ R++DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 688 V-CAFKKKNNLVCRIKDTGVGIPQSAIKKLGQPFEQVENQLTKTHTGSGLGLAISRSLLE 746 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + GK I S KGT + I P+ + Sbjct: 747 LHKGKLEIISKEMKGTTVTITMPIKQS 773 >gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 558 Score = 355 bits (910), Expect = 3e-95, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 15/385 (3%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ ++ + +L+A SD I +++ I+ N+A +L G + +R L Sbjct: 31 ELQRRLSDLERFRVLLDAVSDAILLVDIASNRIIDLNKAACRLIGRCKPEAVRISLRDAL 90 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMH 559 T +L+ L + ++ L I + + Sbjct: 91 PGETADAWGEHLSAGGEAGLPTEERFQMSMRASDGHIVPLEINLSLHYFESKRYAVAVVR 150 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI++ K+ +++L AK+ AE S KS+FLA +SHEIRTP+ IIG E+ Sbjct: 151 DITDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL----ALLTAS 206 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + EY +I +SG +L+I+ND+LD SKIE+G++ L V + + A Sbjct: 207 DVQTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMA 266 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735 EK + +R S ++P + D ++Q+ N++ NAI FT G ++ Sbjct: 267 KEKDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEGLAG 326 Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +++ VRDTG+G+ + EK + F Q+ S ++ G GLGL +++ +V+ G+ Sbjct: 327 GESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGR 386 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ S P KG+ L + P Sbjct: 387 IWVESDPGKGSTFHFTVRLSRAAGP 411 Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats. Identities = 42/401 (10%), Positives = 106/401 (26%), Gaps = 48/401 (11%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + ++++ + IG + + + L D D + + Sbjct: 62 RIIDLNKAACRLIGRCKPEAVRISLRDALPGETADAWGEHLSAGGEAGLPTEERFQMSMR 121 Query: 154 GTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 ++ + VP+++ Y ++ ++ +V K+ + K Sbjct: 122 ASDGHIVPLEINLSLHYFESKRYA----VAVVRDITDRKKAEDELKQAKEAAESASRTKS 177 Query: 213 GHSSVEKEKYDIFSQ--------------------------QSPPPHLRMKNKVSSLTEY 246 + + QS L + N + ++ Sbjct: 178 EFLANISHEIRTPMNGIIGMVELALLTASDVQTREYLGFIKQSGLALLNIINDILDFSKI 237 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLS 304 A + + E P E + P +L L + + L+ Sbjct: 238 EAGRLQLDLREFDPRHMVETTLRPLSYMAKEKDLPLRWSIDPDVPERLAGDQGRIRQVLT 297 Query: 305 H--------RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTK 353 + S+ D E + + F V G A+ F ++ Sbjct: 298 NVVGNAIKFTERGSVVVRVDRTEPEGLAGGESVQLLFSVRDTGIGIPADKQEKIFESFSQ 357 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLA 412 + ++ G L + +L + + + + + RL + Sbjct: 358 VGTSAHMKYGGAGLGLSISRQLVEMMGGRIWVESDPGKGSTFHFTVRLSR---AAGPVVG 414 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 EKA + E + +E ++ + + +E + Sbjct: 415 KRVQALEKAPEASEPLSILLVEDNLINQLLAQSLLEQRGHE 455 >gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586] Length = 1323 Score = 355 bits (910), Expect = 3e-95, Method: Composition-based stats. Identities = 103/506 (20%), Positives = 196/506 (38%), Gaps = 33/506 (6%) Query: 325 TVDKCPI---PFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + P+ ++Y G + + L L +Y S L + Sbjct: 334 LLHQFPVELIGLYIYRDGILTRVAGVGQAELALREYSDP----TTTHFSVLRSGKPYAMK 389 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF---------PENMP 429 + + T + N + + + + Sbjct: 390 ALGGNYQVVSASGTIALNEVYYLPLHVNSQPIALLELGTVGMISIQQYHWLSQMLDDLSV 449 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ G L+ N ++ G Sbjct: 450 AIQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAQFLEMVGLES 509 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K L + + + + + + Sbjct: 510 NEVIGKQPQEIFPDCVADCFAQA--HTLLTQQQSSQNYEISMTDHKGIQHEMLVYEASFG 567 Query: 550 FS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + D++E K + +L AK A+ S K DFLA +SHEIRTP+ AI+G Sbjct: 568 DRADKVNGIVGLLLDLTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILG 627 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + + N + +Y I+ S +L I+N++LD SKIE+GK+N+ +LD Sbjct: 628 MAHLALNTKLDTT----QRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLD 683 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG- 723 + + +++ L A EK I +IP ++ D + Q+ +N+ NA+ FT G Sbjct: 684 DVLDNVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEI 743 Query: 724 QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I + +++ V V+DTG+G+ +L F Q +S + GTGLGL ++ Sbjct: 744 VITARVSQLNDQYVTLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSIS 803 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807 K +V+ G+ + ST +G++ E Sbjct: 804 KQLVELMGGQISVRSTEGEGSIFEFS 829 Score = 45.0 bits (105), Expect = 0.050, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 42/143 (29%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A+G ++ + + +G + ++IG + ++ D LL +Q + Sbjct: 485 MYCLSANGTFLTVNAQFLEMVGLESNEVIGKQPQEIFPDCVADCFAQAHTLLTQQQSSQN 544 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + + R + +G G++ + Sbjct: 545 YEISM-TDHKGIQHEMLVYEASFGDRADKVNGI--VGLLLDLTERKVMEQELREAKDAAD 601 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624 >gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca DW4/3-1] gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 956 Score = 355 bits (910), Expect = 3e-95, Method: Composition-based stats. Identities = 102/594 (17%), Positives = 212/594 (35%), Gaps = 31/594 (5%) Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + + L + + + + ++ EQ F + + ++N Sbjct: 219 LTSAAWWLDHIHPEERQRISESIHGIIDGGHPFWLEQYRFRRGDGSYAVIYDRGYLVRNG 278 Query: 296 SKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLL 350 + + + + E+ +D + L A N + L Sbjct: 279 EGRALRMVGAMQDVTARQAAEEALRQSESRYRRLIDAGIFGMLEWKADGLVTAINDALLG 338 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 L ++ LL + + + A ++ + Sbjct: 339 LLGLTREAALKPGFTFWRLLSPENP------EAMKGLKETGVLPPFEA--QYLRPDGGQV 390 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGIAI 467 + + +R K++ + ++ + + + Sbjct: 391 DLLISGFTLDEGRERGLALVLDTTRLKAVQAERERLMVKLQESETRFRNMADHAPVMLWV 450 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + ++ G E L + + + + + + ++ Sbjct: 451 TDASAYCSYLSKGWYDFTGQTEETGLGFGWLSVVHPDDAKRSSDAFLAANAKRVPFRIDY 510 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH-------AKKIA 578 + L + P Y ++ DI+E KQ +++ A++ A Sbjct: 511 RLRRRDGAYRWLIDSGSPRFGPDGEFLGYIGSLLDITERKQAEDEREGLLARESAARQEA 570 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ + K +FLA VSHE+RTPLTA++G+ +++ R G L ++ ++R+ Sbjct: 571 QEANRLKDEFLATVSHELRTPLTAMLGWVQML---RTGNLPAGKHARALETVERNARAQS 627 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ DLLD+S+I SGK+ L EPV + V A+ V+ A+ K I ++ + + ++ Sbjct: 628 QLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEHALESVRPAADAKHIRLQAAVDSTS-HVM 686 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 D + ++Q+ N+LSNA+ FTP GG++ + + V + V DTG G+ L Sbjct: 687 GDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVERRDS-SVDITVADTGHGIAAKFLPHVFD 745 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811 F Q S G GLGL + + +V+ + G FS KG + P+ Sbjct: 746 RFRQADGSTTRSAGGLGLGLSIVRQLVELHGGTVSAFSEGEGKGATFTVTLPMS 799 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 41/410 (10%), Positives = 98/410 (23%), Gaps = 28/410 (6%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI- 127 +SE F V W DA Y +S+ G +G V Sbjct: 432 ESETRFRNMADHAPV-MLWVTDASAYCSYLSKGWYDFTGQTEETGLGFGWLSVVHPDDAK 490 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 ++ ++ + L +G Y + + P + + EF G+ G + Sbjct: 491 RSSDAFLAANAKRVPFRIDYRLRRRDG--AYRWLIDSGSPRFGPDGEFLGY--IGSLLDI 546 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----------- 236 + L + S + + + ++ E S + P M Sbjct: 547 TERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWVQMLRTGN 606 Query: 237 -KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + ++ +++ L + + + ++ Sbjct: 607 LPAGKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEHALESVRP 666 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKY 354 + ++ S S + + L + F G + Sbjct: 667 AADAKHIRLQAAVDSTSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVERRDSSVDI 726 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 D G++ + + S ++ + A + Sbjct: 727 TVAD---TGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVELHGGTVSAFS 783 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI------EVMQLCSIL 458 + A + E R + E+ +L ++ Sbjct: 784 EGEGKGATFTVTLPMSVALRREVTVPRSLTPAVSRGLPCPPELARLRVLI 833 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 28/371 (7%), Positives = 83/371 (22%), Gaps = 57/371 (15%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 P ++ + + + + L + S + + E +D Sbjct: 4 QPPEDTRQEVPPPRKSGSRATKLLPDLLDASQPEFIQQWVRQVRTLEGAQALSNEELIDS 63 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 P +T + + +G N A Sbjct: 64 LP---------------RFLEEMTGALRQEAGQPSGS------PLPGHSNVAAAHGRQRV 102 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-- 446 A R + + + Q + + + Sbjct: 103 RLGFDAALVVREYALLRDSLFGWIQQNGLSPAMEQVHLLSRCIDTGTREALAQFSSATQS 162 Query: 447 -----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK------ 495 + + ++ AT+D + + + N A+ + G+ ++ + + Sbjct: 163 SGVDGALLTEARYRLVMTATNDVVWDWDLISNEVLWNEALRSVLGHELQVLGERMYLTSA 222 Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 + + ++ + I+ LE+ + + + Sbjct: 223 AWWLDHIHPEERQRISESIHGIIDGGHPFWLEQ-YRFRRGDGSYAVIYDRGYLVRNGEGR 281 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 M D++ + + L ++ + I G E Sbjct: 282 ALRMVGAMQDVTARQAAEEALRQSESRYRRLIDA-----------------GIFGMLEWK 324 Query: 611 KNQRFGPLGNP 621 + + + Sbjct: 325 ADGLVTAINDA 335 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 25/251 (9%), Positives = 59/251 (23%), Gaps = 25/251 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W A G + I++ L +G + G + + + + + Sbjct: 323 WK--ADGLVTAINDALLGLLGLTREAALKPGFTFWRLLSPENPEAMKGLK---ETGVLPP 377 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---- 200 + +G V + ++ + RE RG +V +A +RL Sbjct: 378 FEAQYLRPDGGQ--VDLLISGFTL-DEGRE----RGLALVLDTTRLKAVQAERERLMVKL 430 Query: 201 ---DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLK 255 + +F ++ + V + + D K Sbjct: 431 QESETRFRNMADHAPVMLWVTDASAYCSYLSKGWYDFTGQTEETGLGFGWLSVVHPDDAK 490 Query: 256 TEKYPLLTSEESSLPEQ--EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L + +P + + E Y+ + Sbjct: 491 RSSDAFLAANAKRVPFRIDYRLRRRDGAYRWLIDSGSPRFGPDGEFLGYIGSLLDITERK 550 Query: 314 YFDEGENLTPE 324 ++ Sbjct: 551 QAEDEREGLLA 561 >gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus torquis ATCC 700755] Length = 1325 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 128/643 (19%), Positives = 243/643 (37%), Gaps = 24/643 (3%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLR 235 ++ + K ++ FS + + K + Sbjct: 276 CVIREVTDRKNAEKELKLINNLFSEAESLSQIGGWHYDVKKEKLFWTPILKEIAEIESHE 335 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT---L 292 + +L+ + + + TEK S + + T Sbjct: 336 QPDLEGALSFFKSGESAKRMTEKVQDCIHNHISYTGEFETQTAKGRSIWALVNIKPEIVD 395 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLL 350 + + + + + + +D + + ++ G + N F+ Sbjct: 396 KECVGLYGTFQDITDIKNTKIKLKKERSRLNNIIDATNLGTWEWNVQTGEALF-NNRFVE 454 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + Y + + + ++ + +A D + D L Sbjct: 455 MLGYTTKE-MTLSNSIDVWNNATHPIDLPESDKALQEHFDGKSDFYKMDLRLKHKLGHWI 513 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN- 469 + + + G + D ++ ++ ++ V Q +I E + GI I + Sbjct: 514 WVLDKGKVISWTEDGQPEWMFGTHHDITDKKVLEKDLKKNVQQFKNIFELSPVGIIITDF 573 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKI 528 + G L N+A+ + GY ++IL + + + L LEK+ Sbjct: 574 KSGNFLDVNKAMQDMVGYTKDEILDMNIWSITPEKEVVEKDRQAIQNLKDLKKIGPLEKV 633 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 T E + + +I + + T+ DI+E K+ + KL +K A K S KS+ Sbjct: 634 LKAKTGEFIKVMINGLIHFNEDGNRIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKSE 693 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHEIRTPL +IGFS+++ N +Y + +S N +LD++ND+L+ Sbjct: 694 FVANMSHEIRTPLNGVIGFSDLLMKTPL----NEVQHKYMKTVFQSANTLLDLINDVLNF 749 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIESGK+ L E SL + V+E + L + A++K + + IP I D +KQ Sbjct: 750 SKIESGKLQLDIEKTSLIKLVNEVVDLTKYDAHKKGLEFVLVIEDKIPDYIWIDGVRLKQ 809 Query: 707 IALNILSNAIHFTPSG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQI 763 I +N++SNAI FT G ++ + + +N + V D G+G+ +K F Q Sbjct: 810 ILMNLISNAIKFTHRGYVKLKVHFKNKTNNLTTISFSVEDKGIGIAKGNQKKIFNAFIQE 869 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 S + GTGLGL ++ ++ K + S G+ Sbjct: 870 DASVTKKYGGTGLGLSISGKILGLMNSKLKLKSQLGIGSEFYF 912 Score = 46.2 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 47/135 (34%), Gaps = 2/135 (1%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + ++L T D + ++N E L L I ++ + L+ S + Sbjct: 171 KHRFQTLLNNTGDMVFLLNAELKFLEFYGKEDNLLLKKQTFINKRIDEIDLDHQLVSKLK 230 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKN 569 + + +E L K +K ++ + + + + + ++++ K + Sbjct: 231 LAVESSKQNNSSIPIEYNLLA-NKSQKWFNMNVTVVQRKNSETEVLCVIREVTDRKNAEK 289 Query: 570 KLSHAKKIAEKESSH 584 +L + + S Sbjct: 290 ELKLINNLFSEAESL 304 Score = 39.2 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 7/133 (5%), Positives = 36/133 (27%), Gaps = 3/133 (2%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G ++++ + +G +++ M + ++ + + + G Sbjct: 576 GNFLDVNKAMQDMVGYTKDEILDMNIWSITPEKEVVEKDRQAIQNLKDLKKIGPLEKVLK 635 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 T ++ + + L ++ + + ++ + + K Sbjct: 636 AKTGEFIKVMINGLIHFNEDGN---RIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKS 692 Query: 213 GHSSVEKEKYDIF 225 + + Sbjct: 693 EFVANMSHEIRTP 705 >gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP 105476] Length = 773 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 123/507 (24%), Positives = 222/507 (43%), Gaps = 53/507 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y D + +S +++ + + + +M + I Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQISAIINPNDANFFDLAQELMGGKKKHIDINV----- 339 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M + P GI + + + + +++ +E Sbjct: 340 PMRHADGHYVWMRLRAEVTEEEEP---HLVGISFDISEQQQLAEQTAQADLRIRDAIENI 396 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E ++ Y + Sbjct: 397 SESFVLWDAEGRLVMSNSKFCEYAAIPKQILQSGIQRATVEAMARPALSEYPLKDDGTG- 455 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 456 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 509 IQELKRTRGSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ FGPLG+ RY EY + I SG +L ++ND+LD+SKIE+G+ L + L+ Sbjct: 569 SDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFTLDCKNTDLEP 628 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SEA+ + A EK I + T+ + D R++KQI LN++SNA+ FTPSGG I Sbjct: 629 IISEAVRTLTPQAQEKNIAVTTNITPKL-HAEVDGRAMKQIFLNLISNAVKFTPSGGNID 687 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +I ++ DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 688 V-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLE 746 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + GK I S KGT + II P+ + Sbjct: 747 LHKGKLEITSKEMKGTTVTIIMPITQS 773 >gi|323699593|ref|ZP_08111505.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323459525|gb|EGB15390.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1165 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 108/531 (20%), Positives = 198/531 (37%), Gaps = 32/531 (6%) Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348 + + + L R S E E + D ++ G + N Sbjct: 377 RRAEKELRTAHRTLEERVKERTSK-LRESEEVLRTVFDFAYDAIIIHDGQGRILEVNQRM 435 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + + +D ++ L +P + + D R+ + +RE Sbjct: 436 IEMFGLEGMDPSGVSLAQD--LSSPDNPLHAMAGIMREVL-DGRPHHLEWRVRRYRDSRE 492 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + + + ++ + +++ +ILE + GIA+ Sbjct: 493 FDVEVHLTRITYRGEEA----ILANVRDISVRKESENSIRQNLVKFEAILENSLMGIAMT 548 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 I++ NR +++FGY E++ + L L +L R Sbjct: 549 -VGRRIVTINRRGAEIFGYSPEEMQDNTLNLLLGHYQTQDEF-VLAAKAALAERGEFNTE 606 Query: 529 TLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 +K + R+ + + D++E ++ + L ++ AE + K Sbjct: 607 QAFRSKNGSTVWCRMYAKTVDPGDLTRGVIWAWDDVTENRKAQEDLLRTREDAEAANRAK 666 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHEIRTP+ AI+G +E+ +Y + S +L I+ND+L Sbjct: 667 SEFLAAMSHEIRTPMNAIVGMTEITLQTDL----TDDQRDYLKTVKDSAQHLLSIINDIL 722 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D+SKIE+ K+ L L V I +++ A +K + + P + D S+ Sbjct: 723 DLSKIEARKLELDHVDFDLPFHVRTTIKGLEVQARQKGLDMVLEIDEAAPNCVKGDPLSL 782 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKA 756 +Q+ +N+ NAI FT G I I V V DTG+G+ L+ Sbjct: 783 RQVLVNLAGNAIKFTHRG-TIAIRVGPGQGPAPDEARTVGVAFAVEDTGIGIPREFLDSI 841 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + F Q GTGLGL + K ++ G + ST KG+ Sbjct: 842 FQSFSQT----TRAFGGTGLGLAICKQLISLMGGDIVVESTVGKGSTFSFT 888 Score = 45.0 bits (105), Expect = 0.058, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 24/255 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHI--DPNNHIGDLLKRQNTWYGK 146 D G + E+++ + + G G+ L D+S + + ++L + Sbjct: 423 DGQGRILEVNQRMIEMFGLEGMDPSGVSLAQDLSSPDNPLHAMAGIMREVLDGRPHHLEW 482 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + V + L + V V + ++ KF Sbjct: 483 RVRRYRDSREFDVEVHLTRITYRGEEAIL------ANVRDISVRKESENSIRQNLVKFEA 536 Query: 207 LHEIK---------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + E + ++ + +IF P N ++ L +Y +D+ + Sbjct: 537 ILENSLMGIAMTVGRRIVTINRRGAEIFGYS---PEEMQDNTLNLLLGHYQTQDEFVLAA 593 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 K L E ++ F + N + + Y T+ + + + + + + E Sbjct: 594 KAALAERGE--FNTEQAFRSKNGSTVWCRMYAKTV-DPGDLTRGVIWAWDDVTENRKAQE 650 Query: 318 GENLTPETVDKCPIP 332 T E + Sbjct: 651 DLLRTREDAEAANRA 665 >gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1059 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 116/533 (21%), Positives = 205/533 (38%), Gaps = 39/533 (7%) Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 N + P + G NP+F + L Sbjct: 254 LQTQRNRFETLLAANPDLISLKNRVGIYQVVNPAFCHFLGLPKEAILGQDDA--RLFTPH 311 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASAR--------LHTIQWN-----RENSLAMTFIPFEK 420 + + +L + A LH I+ E S +T + Sbjct: 312 QAARIRQADQWVLSSGAPSAQEEEAVGPDNLPLWLHVIRTPITQATGEVSGILTTVRNIS 371 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNR 479 A + E + E + + + + +L + E + + + + + Sbjct: 372 ARRMAEEALRTAHEGLEQEVAQRTQALRESETRLRIVTENLPAVVWMSDPLLTSMHFVSP 431 Query: 480 AVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 A +++G E +L+ + + + S + + Q E + Sbjct: 432 AYEQIWGKSRESLLQDPQSLWTSIHPSDRSFVLKRILNSNG----QPWEAEYRILHPDGT 487 Query: 538 LLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +R + L + D++ K+ + LS AK+ AE + KS FLA +S Sbjct: 488 TRWIREQGAAFRDTHKQILFLIGCAFDVTPLKETERALSTAKQEAESANHAKSAFLATMS 547 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTPL I G E+++ + I + +++DI+ND+LD+SKIE+G Sbjct: 548 HEIRTPLNGITGMIELLQRSALSV----EQRQQVETISKCSVVLMDILNDILDLSKIEAG 603 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712 ++ L P S + + + ++Q A K + ++ + +P +L D ++Q+ALN++ Sbjct: 604 QLVLERAPFSPTQLLLNLLEVMQPQARNKELDLQLNMDEKLPSTMLGDATRLRQVALNLI 663 Query: 713 SNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI FTP G + IS V L V+D G+G+ + +L PF Q +S Sbjct: 664 GNAIKFTPRG-WVKISLLVHERIDDIVWVELAVQDQGIGIADEKLVHLFNPFTQADSSIT 722 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHDC 819 GTGLGL ++K +V+A G + S KGT + P + T P D Sbjct: 723 RNYGGTGLGLAISKRLVEAMAGAISVTSIEGKGTHFRVTLPMQVAHTPLPADA 775 Score = 50.8 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 27/320 (8%), Positives = 74/320 (23%), Gaps = 40/320 (12%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWP 151 G + ++ +G ++G + +L + Sbjct: 279 GIYQVVNPAFCHFLGLPKEAILGQDDARLFTPHQAARIRQADQWVLSSGAPSAQEEEAVG 338 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + L + + + PI E SG V + + + Sbjct: 339 PDN--LPLWLHVIRTPITQATGEVSGI--LTTVRNISARRMAEEALRTAHEGLEQEVAQR 394 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------KDDVLKTEKYPLLTS 264 + + I ++ P ++S+ + L + L TS Sbjct: 395 TQALRESETRLRIVTENLPAVVWMSDPLLTSMHFVSPAYEQIWGKSRESLLQDPQSLWTS 454 Query: 265 EES----------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + ++ ++ K+ + Sbjct: 455 IHPSDRSFVLKRILNSNGQPWEAEYRILHPDGTTRWIREQGAAFRDTHKQILFLIGCAFD 514 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + + + + +A +FL ++ + G+ Sbjct: 515 VTPLKETERALSTAKQEAESAN------------HAKSAFLATMSHEIRTPLNGITGMIE 562 Query: 369 LLDAPKLSDNNAIKPVMLYR 388 LL LS + + + Sbjct: 563 LLQRSALSVEQRQQVETISK 582 >gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 576 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 123/562 (21%), Positives = 215/562 (38%), Gaps = 51/562 (9%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANPSFLL 350 R + + + T D HG + N Sbjct: 6 VDRQAAEPQSRAETIVESRRQKILLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGAER 65 Query: 351 LTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASARL 400 + Y S D ++ L+ + P+ L I L Sbjct: 66 MLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYEL 125 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQ 453 I+ + AM + + I ++ + + +++ + Sbjct: 126 TYIRKDGSRLSAM-VSVTSLRDSTETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQFY 184 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 185 TRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAI 242 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571 ++S E E ++S D++E K+ + L Sbjct: 243 KRVISEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFERTL 302 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 E S KS+FLA +SHE+RTPL AIIGFSE +K+ G + + Y I Sbjct: 303 EEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDMSDA-QRGYIGDIF 361 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ +V+ A +RI ++ Sbjct: 362 NSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETD 421 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------------- 736 + + D R KQI N+L+NA+ F+ GG + +S + + Sbjct: 422 ADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAGVLEGDWPTHVFPV 481 Query: 737 --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + L V DTG+G+ ++ K K F QI + + EGTGLGL + K + + + Sbjct: 482 PPGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLAELH 541 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S G + P+ Sbjct: 542 GGSVAVASVKDLGARFVVWLPI 563 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 5/137 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I ++ + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVISEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIF 225 +K + + Sbjct: 314 HMKSEFLATMSHELRTP 330 Score = 44.6 bits (104), Expect = 0.071, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G + R Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSTETIIGYLLIGTDNTARKQE 167 Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244 + + L E + + I R ++++ Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + SE + + + T + ++ + Sbjct: 228 CKNFFTDPASADAAIKRVISEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329 + F+ ++ Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312 >gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1118 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 121/739 (16%), Positives = 258/739 (34%), Gaps = 44/739 (5%) Query: 97 EISEELPKTIG---NYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 +S + +G A + + + V + +++ + + Sbjct: 244 YVSPQAVVLLGGQGCQADEPLDVWWNRHVWAEDW--ETLQHARQMLKKHKRPMQVEYRMV 301 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + + A + +G +V + +F L+E Sbjct: 302 RQDGQLIWVRDVARLVCDEQGLPLLVQG--MVMDVSEARHTHEKLIASEVRFRQLYENAP 359 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE- 271 + I + + ++S + ++ + V+ E+ E Sbjct: 360 IAYQSLNTEGVIQNVNQA-WLKKTGYELSQVLDHSLFEFLVVGQEQEVAKKFEAFLQAGY 418 Query: 272 ----QEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTP 323 + + ++ S + E E+ Sbjct: 419 VQDLHYELRCADGRALKVSINGQVSRDRSGRLVKTHCVLTDITEQDRAAQALQESESRLR 478 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNA 380 + F + GN +ANP+ L + Y+ + L + + + Sbjct: 479 LILASTGEGLFGLDLQGNFIFANPACLRMMGYRDDRQLLGKPMLEIVSCCSSQFVRRGKG 538 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 P+ A L + + + F Q E + + Sbjct: 539 SCPISQILKTGLPNHAEGELF--RRADGSFFSTEFWSHPI-QQNGELVGAVVTFIDISQR 595 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTV 499 +N+ ++ ++ +I E+ + I++ G++ N A FG + ++ Sbjct: 596 VLNQTALKASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIRE 655 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--------PFS 551 + L+ L++ + E + + + Sbjct: 656 --HPGVAGSLLAESFLALAKGEPMPLQQASYTMEAEGEAIHFNVRGVPFVTRDGEGREDL 713 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + +I++ KQ + KL A + A+ + K DFLA +SHEIRTP+ ++G +E++ Sbjct: 714 QGALVIHENITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLL 773 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 N Y + ++G+ +L ++N++LD++K++ G++ L EP + + E Sbjct: 774 ETDV----NAEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEV 829 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++ L A K + + +P +L D +KQ+ LN+LSNA+ FT G I +S T Sbjct: 830 SGIISLAAEAKGLTLSCEIQEGVPERVLGDSVRIKQVLLNLLSNALKFTQQGF-IRLSLT 888 Query: 731 HTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E ++ V D+G+G+ +Y L++ + F Q +S R G+GLGL + K +V Sbjct: 889 VEGAEGAQQLCYAVSDSGMGIPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVIL 948 Query: 788 NMGKFYIFSTPAKGTLIEI 806 G+ + S G + +I Sbjct: 949 MQGQIQVSSQVDVGAIFQI 967 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 31/384 (8%), Positives = 92/384 (23%), Gaps = 28/384 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ++ G ++ +++ K G +++ L + + + + Sbjct: 365 LNTEGVIQNVNQAWLKKTGYELSQVLDHSLFEFLVVGQEQEVAKKFEAFLQAGYVQDLHY 424 Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G L V I R+ ++ + + + + + Sbjct: 425 ELRCADGRALKVSI--NGQVSRDRSGRLVKTH--CVLTDITEQDRAAQALQESESRLRLI 480 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYA-----HKDDVLKTEKY 259 + + R ++ + Sbjct: 481 LASTGEGLFGLDLQGNFIFANPACLRMMGYRDDRQLLGKPMLEIVSCCSSQFVRRGKGSC 540 Query: 260 PLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSA 313 P+ ++ LP E E F + + ++ + + +Q ++ Sbjct: 541 PISQILKTGLPNHAEGELFRRADGSFFSTEFWSHPIQQNGELVGAVVTFIDISQRVLNQT 600 Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + P P + G + N + + + Sbjct: 601 ALKASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIREH---- 656 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFP--ENMP 429 + + L + + +T++ E + +PF + + Sbjct: 657 -PGVAGSLLAESFLALAKGEPMPLQQASYTMEAEGEAIHFNVRGVPFVTRDGEGREDLQG 715 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ 453 I D + + K+ V + Sbjct: 716 ALVIHENITDLKQTELKLRKAVEE 739 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 48/145 (33%), Gaps = 10/145 (6%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGII-LSTNRAVSKLF---GYPVEDILRKPFTV 499 +ME + +L ++E I + + + L G ++ L + Sbjct: 211 AGRMEWQHQRLAMLVEGMPAVIYTEDLRTQLPYYVSPQAVVLLGGQGCQADEPLDVWWNR 270 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + + H + + ++ ++ +L+ +R + + + L + Sbjct: 271 HVWAEDWETLQHARQMLKKHK--RPMQVEYRMVRQDGQLIWVRDVARLVCDEQGLPLLVQ 328 Query: 560 ----DISEWKQEKNKLSHAKKIAEK 580 D+SE + KL ++ + Sbjct: 329 GMVMDVSEARHTHEKLIASEVRFRQ 353 Score = 41.6 bits (96), Expect = 0.63, Method: Composition-based stats. Identities = 44/362 (12%), Positives = 99/362 (27%), Gaps = 22/362 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDV----SDILHIDPNNH--IGDLLK 138 + +D G + + +G + ++G + ++ S I +LK Sbjct: 488 LFGLDLQGNFIFANPACLRMMGYRDDRQLLGKPMLEIVSCCSSQFVRRGKGSCPISQILK 547 Query: 139 RQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 +G+ + + + PI +N E G + Sbjct: 548 TGLPNHAEGELFRRADGS--FFSTEFWSHPIQ-QNGELVGA--VVTFIDISQRVLNQTAL 602 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 K + K+ + E + D+ S + ++ Sbjct: 603 KASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIREHPGVAGS 662 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + L ++ +P Q+ +T+ N F L Sbjct: 663 LLAESFLALAKGEPMPLQQASYTMEAEGEAIH------FNVRGVPFVTRDGEGREDLQGA 716 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 EN+T + + V +A FL + ++ + + G++ LL Sbjct: 717 LVIHENITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLETD 776 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 ++ L ++ T ++ + + E L + PF E + Sbjct: 777 VNAEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVSGIISLA 836 Query: 435 PE 436 E Sbjct: 837 AE 838 >gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1118 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 111/508 (21%), Positives = 201/508 (39%), Gaps = 32/508 (6%) Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + P+ + + + Y N F + + D + + + +L Sbjct: 315 RDIENILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY 374 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ--------WNRENSLAMTFIPFEKANQFPENMPQ 430 + + L + W S+ Sbjct: 375 DGTQT------PEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADI 428 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + + +E L A G+AI+ ++GII +N A++ + P Sbjct: 429 TAVRERENEVHEARAALEHLGELLRDATHAMPQGLAIV-QDGIIKMSNEALAHILEIPAT 487 Query: 491 DI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIII 545 I + + + H + R + ST E+ +++ + Sbjct: 488 YIETGQGWLGMFDFCAARGDFHEDAAEILQGWRDNIAARLPISTAFHVGGERWVNMDATV 547 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 K + D++E K + +L AE KS+FLA +SHEIRTP+ ++G Sbjct: 548 SK---GQHWVALFTDVTELKGREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLG 604 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E++ R + + I +SGN +L I+ND+LD SKI++G+M L + Sbjct: 605 MAELLAKTNLDT----RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDIT 660 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 EAV + +L+ +A EK I + A ++P ++ D +QI N++ NA+ FT G Sbjct: 661 EAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHV 720 Query: 725 -IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + + E+ +R+ DTG+G+ + +LE F Q+ S R EGTGLGL + Sbjct: 721 FVDVGFQPAAGGEIMACIRIEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAIT 780 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +VD G + S KG++ I P Sbjct: 781 AGLVDLFGGYLNVESEWGKGSVFTINLP 808 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 5/146 (3%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E+ L +ILE + + + ++ N+ G+ +L + + Sbjct: 181 ELDLLRTILEDLPVAAFVRDEKHRLVYANQYYETFSGHSRSRVLGMTEHEMFGPDGGEAI 240 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQ 566 Y +L+L ++ E +L +K+ + S+ + ++ + + DIS K+ Sbjct: 241 --YQENLLALQGGKSKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKE 298 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592 + L A+K E + L + Sbjct: 299 REKALIEAQKHKEVLHRDIENILRSL 324 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 36/387 (9%), Positives = 86/387 (22%), Gaps = 27/387 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D L ++ G+ +++GM ++ + L+ + ++ Sbjct: 200 DEKHRLVYANQYYETFSGHSRSRVLGMTEHEMFGPDGGEAIYQENLLALQGGKSKEIESL 259 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHV-----NRVDNDPRALGKRLDK 202 L +G V + + G F + L + ++ Sbjct: 260 LPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKEREKALIEAQKHKEVLHRDIEN 319 Query: 203 KFSHLH------EIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 L + + E Y I+ P R V D Sbjct: 320 ILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRYDGTQT 379 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----- 310 E+ E E + + N+ Sbjct: 380 PEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADITAVRERENEVH 439 Query: 311 -LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 A + L + P + G + +N + + + + G L Sbjct: 440 EARAALEHLGELLRDATHAMPQGLAIVQDGIIKMSNEALAHILEIPATYIETGQGWLGMF 499 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D + +L A E + M + Sbjct: 500 DFCAARGDFHEDAAEILQGWRDNIAARLPISTAFHVGGERWVNMDATVSKG-------QH 552 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + + + ++ + + + Sbjct: 553 WVALFTDVTELKGREEELRQLLSRAEA 579 >gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 774 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 117/637 (18%), Positives = 228/637 (35%), Gaps = 47/637 (7%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKT-- 256 ++K E ++ + + R+ ++ +Y ++ + Sbjct: 2 NEEKLRLFVEYAPAALAMFDREMRYLYVSRRWLTDYRLGDRDLRGLSHYDVFPEIQQRWK 61 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 E + + ES + + F + + E + + + Sbjct: 62 ELHSRCLAGESLSADSDRFVRADGTVQWLRWEIRPWFVTPDEIGGIVIFSEDITKLKQAE 121 Query: 317 EGENLTPETVDKC-PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + I F+ G + AN + + Y + + + + Sbjct: 122 DVLRRYELLSKYSRDIALFIRRGDGRILEANDAAVRTYGYSHDELLG------MTIYDLR 175 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D A P + +D I T + + ++ + Sbjct: 176 TPDCAAPAPAQMEEADTHGILFETVHRTKEGRAFPVEVSSCGVDIGDDRI-----LLSLV 230 Query: 435 PEDVDTRINKRKME-------IEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFG 486 E + + +++ + +L ++++A + I + +++ N A +L Sbjct: 231 REISKRKEAEAELKRNAEVEHARLAELEALMQAVPAAVLISHDPHCHVITGNHAAYELLR 290 Query: 487 Y--------PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 D F V + SV L + ++ + Sbjct: 291 MEYGSNTSKSNPDAKTSHFKVLHQGKELSVAELPLQQAIATGMP-VCNFEEEILFDNGDC 349 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +S+ L +S DI + Q + + A+ AE + KS FLA +SH Sbjct: 350 VSVYGNAVPLRDASGSITGVVAAFVDIGQLVQAQEEARQARLAAEAANRAKSAFLANMSH 409 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTPL I+G +++++ R +Y I S + +L ++ND+LD+SKIE+GK Sbjct: 410 EIRTPLNGIVGTAQLLEFTRLTG----EQKDYLADIKSSSSTLLSLLNDVLDLSKIEAGK 465 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 + L L ++ I ++ A K + I +++P + D KQI LN+L Sbjct: 466 ITLESLDFRLRASIDGVIKSLKSLAQSKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLG 525 Query: 714 NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FT +GG I +S + + V+DTG+G++ LE +PF Q S Sbjct: 526 NAVKFTETGG-ITVSVRLKEQHNDQLLLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTK 584 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + GTGLGL + K +V G+ + S G+ + Sbjct: 585 KYGGTGLGLAICKRLVTMMGGQLWAESVAGGGSTFHL 621 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 30/384 (7%), Positives = 83/384 (21%), Gaps = 28/384 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D +S + G+ DV + L ++ Sbjct: 21 DREMRYLYVSRRW--LTDYRLGDRDLRGLSHYDVFPEIQQRWKELHSRCLAGESLSADSD 78 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT ++ ++ P + E G F + +R + + Sbjct: 79 RFVRADGTVQWLRWEI--RPWFVTPDEIGGIVIF--SEDITKLKQAEDVLRRYELLSKYS 134 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +I + + I + L P E Sbjct: 135 RDIA---LFIRRGDGRILEANDAAVRTYGYSHDELLGMTIYDLRTPDCAAPAPAQMEEAD 191 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL------ 321 + + + + + LS S + Sbjct: 192 THGILFETVHRTKEGRAFPVEVSSCGVDIGDDRILLSLVREISKRKEAEAELKRNAEVEH 251 Query: 322 -----TPETVDKCPIPFFV-YSHG-NLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDA 372 + P + + ++ N + L + Y S ++ Sbjct: 252 ARLAELEALMQAVPAAVLISHDPHCHVITGNHAAYELLRMEYGSNTSKSNPDAKTSHFKV 311 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 ++ + L ++ T + I ++ + +++ + Sbjct: 312 LHQGKELSVAELPLQQAIATGMPVCNFEEEILFDNGDCVSVYGNAVPLRDASGSITGVVA 371 Query: 433 IEPEDVDTRINKRKMEIEVMQLCS 456 + + + +L + Sbjct: 372 AFVDIGQLVQAQEEARQ--ARLAA 393 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 71/263 (26%), Gaps = 28/263 (10%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + E ++ +T G +++GM + D+ P + +T Sbjct: 144 GDGRILEANDAAVRTYGYSHDELLGMTIYDLRTPDCAAPAPAQMEEADTHGIL-FETVHR 202 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 EG V + + I +V + A KR + Sbjct: 203 TKEGRAFPVEVSSCGVDIGDDR------ILLSLVREISKRKEAEAELKRNAEVEHARLAE 256 Query: 211 KKGHS---------SVEKEKYDIFSQQSPPPHLRMK-------NKVSSLTEY--YAHKDD 252 + S + + I + LRM+ + + T + H+ Sbjct: 257 LEALMQAVPAAVLISHDPHCHVITGNHAAYELLRMEYGSNTSKSNPDAKTSHFKVLHQGK 316 Query: 253 VLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 L + PL + + +P +E+ N + + L++ S ++ Sbjct: 317 ELSVAELPLQQAIATGMPVCNFEEEILFDNGDCVSVYGNAVPLRDASGSITGVVAAFVDI 376 Query: 310 SLSAYFDEGENLTPETVDKCPIP 332 E + Sbjct: 377 GQLVQAQEEARQARLAAEAANRA 399 >gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria pomeroyi DSS-3] Length = 743 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 179/386 (46%), Gaps = 14/386 (3%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + ++ + + + E L + +D + + + EG I+ TN + ++ GY +++ Sbjct: 210 TTLDLIEQGRDLLRHQKEAQLLSLVARNANDSVILADSEGRIVWTNESFTRTTGYSLDEA 269 Query: 493 LRKPFTVFLEQNTPS-VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + L + +++ + + + L TK+ + + + + + Sbjct: 270 KGRYPGELLNGDKTDLEVSNAIADAVEAGRP--FRTEILNVTKDGREIWMETNLVPVLDR 327 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + D++ K + +L+ A+ AE+ + K++FLA +SHEIRTP+ ++G + Sbjct: 328 NGKVEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMA 387 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ + +Y + I S +L I+ND+L++S++++ KM LH Sbjct: 388 ELLSETKLSI----EQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSC 443 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QI 725 V + + L++ A K + + ++P + D ++Q+ +N+L NAI FT GG + Sbjct: 444 VRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGGVTL 503 Query: 726 IISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + L V DTG+G+ ++E+ + F Q GTGLGL +++ + Sbjct: 504 RLRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERFSQADADTTRLYGGTGLGLTISREL 563 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V G+ + ST +G+ + PL Sbjct: 564 VALMGGRITVDSTLGQGSCFTLCLPL 589 Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 36/391 (9%), Positives = 98/391 (25%), Gaps = 29/391 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147 D+ G + +E +T G + G ++ + ++ +N I D ++ + + Sbjct: 246 DSEGRIVWTNESFTRTTGYSLDEAKGRYPGELLNGDKTDLEVSNAIADAVEAGRPFRTEI 305 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + ++ +P+ RN + I Sbjct: 306 LNVTKDGR--EIWMETNLVPVLDRNGKVE--VTVAIERDVTAAKAQAEELAAARVAAEEG 361 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 K + + + S+ + + L + + Sbjct: 362 ARAKAEFLATMSHEIRTPMNGVVGMAELLSETKLSIEQRQYVDTIRSSSTA---LLAIIN 418 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-------- 319 + E + + + ++ + + LS Sbjct: 419 DILELSRLDARKMELHPVNFDPVSCVRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDD 478 Query: 320 -NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG------LSTLLDA 372 L ++ G + S Y ++E G + + + Sbjct: 479 GRLRQVLINLLGNAIKFTERGGVTLRLRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFER 538 Query: 373 PKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 +D + + + L S R+ + S +P + Sbjct: 539 FSQADADTTRLYGGTGLGLTISRELVALMGGRITVDSTLGQGSCFTLCLPLGSPDDDAGQ 598 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + P ++D R + + ++ +L Sbjct: 599 SDGQVLSPAELDRLRGLRVLVADDNRVNRLL 629 >gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1267 Score = 354 bits (909), Expect = 3e-95, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 177/397 (44%), Gaps = 23/397 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + I + + ++ K+ +L + E + + +L + A KLFG Sbjct: 348 RLSIREKITKLKDSEEKLRQSEEKLRQLAENLDELFWLRTHR-EMLYVSPAFEKLFGKKC 406 Query: 490 EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLR---QTLEKITLGSTKEEKLLSLRII 544 L P F F+ + + + + + ++ + Sbjct: 407 TSFLENPDTFLEFVHPDDRGKAISIFSGSIGKQEDIFDGAYNDEFRIVSPDGEICWIWAK 466 Query: 545 IKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + + + D++ K+ + L+ AK+ AE + KS+FLA +SHEIRTP+ Sbjct: 467 TVPVKDADGEVVRIAGVASDVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPM 526 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 IIGF ++ + N + + Y I +L I+ND+LD SK+E+GKM++ Sbjct: 527 NGIIGFCHLLMQTQL----NSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHV 582 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 +L+E +++ L++ A++K + + + +P + D +KQ+ +N+ +NAI F+ Sbjct: 583 DFNLEEVIADLFYLLENQASQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFS 642 Query: 720 PSGGQIIISTTH-----TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 G I + + +++VI+ V D G+G+T ++++ F Q +S + Sbjct: 643 DQG-NIFLRVEKIDQSDSDSDQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYG 701 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++K +V+ G+ + S G+ P Sbjct: 702 GTGLGLAISKYLVELMGGEISVSSEYGVGSTFSFSLP 738 >gi|17229406|ref|NP_485954.1| hypothetical protein all1914 [Nostoc sp. PCC 7120] gi|17131004|dbj|BAB73613.1| all1914 [Nostoc sp. PCC 7120] Length = 1123 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 93/770 (12%), Positives = 229/770 (29%), Gaps = 66/770 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK 146 +D G L ++ + G +++G + + I LK Sbjct: 240 RVDNLGRLTFVNPVACRIFGKPMDELVGQLIFEWMFPEDEIPQAKEYFQALKSPPHKISI 299 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P+ + + I + E F+G G ++ + + + Sbjct: 300 SEQ-PVLTPSGIRWFQWNVIGIKNTIGEVVEFQGVG--RDITECRQAEESLRQSEARLNL 356 Query: 207 LHEIKKGHSS---------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 E + + + +D ++ Sbjct: 357 ALEAANMGIWDWYLLTNETIWSANMGLLYGLPSTTLCPSPE---DFLQLIHPQDRENFSQ 413 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + + + + S + Sbjct: 414 SVKNSIEQGMPFTVEYRTVWKDGSIHWLNSRGQVYYDKPGKPIRMIGTTRDISERKQAEA 473 Query: 318 GENLTPET----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E V + + N S + ++ L Sbjct: 474 SLRESEELYRSVVTAMREGIILQDKVKIIACNASAERILGLSKEQILQRTCVDERWLTIH 533 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + + RT S + + ++ + Sbjct: 534 EDGSPFPGEQHPAMETLRTGKPCSNVVMGVYKPDGQISWISINSQPLCRENETVPYAVVT 593 Query: 434 EPEDVDTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 D+ + ++ + Q ++L+ +D I + + IL N+ +L+G+ Sbjct: 594 SFADISEQQAALRLRQQAEQKIREQAALLDIATDAIFVKDLHTNILFWNQGAERLYGWSQ 653 Query: 490 EDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++ + + L + + L ++ L + TK K + + + Sbjct: 654 QEAIGRNAQKLLYSETSLHLHEAALNVVMELG---LWQGELQKLTKSGKEIIVESRWTLM 710 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 ++ + DI++ KQ + + +++ ++H++ LT I+ Sbjct: 711 RDAAGLPKSILIVDTDITQKKQLEEQFFRTQRL-----ESLGTLAGGIAHDLNNILTPIL 765 Query: 605 GFSEVIK----NQRFG--PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 S+++K + G G ++ + +V +L ++ G+ + Sbjct: 766 AASQLLKVKFPEDKGGTPTAGGTSSQHLLEIVENNARRGAGLVKQVLSFARGFKGERTI- 824 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 V L +++ I L+ K I +SF + + D+ + Q+ +N++ NA Sbjct: 825 ---VQLKHLITDII-LIGKQTFPKSIEFTSSFPEVLWAVCGDVTQLHQVLMNLVVNARDA 880 Query: 719 TPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 P+GG+I ++ + L V DTG G++ L + +PF Sbjct: 881 MPNGGKINVTADNIFIDETYASMILEAQVGNYIQLTVTDTGAGISPEILNRIFEPFFTTK 940 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G GTGLGL ++ ++ G + S +G+ ++ P + Sbjct: 941 ----EVGVGTGLGLSTVLGIIKSHGGFVKVSSKVGQGSQFKVFLPAIPAT 986 Score = 87.8 bits (216), Expect = 8e-15, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 59/154 (38%), Gaps = 3/154 (1%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + V+ + K+ ++ ++E ++ I ++ G + N ++FG P+++++ Sbjct: 207 QRDIVEVQQPKQALQQSEQLYRQLVELQTEVILRVDNLGRLTFVNPVACRIFGKPMDELV 266 Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPF 550 + F ++ Y + S + ++ + + + + +I K + Sbjct: 267 GQLIFEWMFPEDEIPQAKEYFQALKSPPHKISISEQPVLTPSGIRWFQWNVIGIKNTIGE 326 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + DI+E +Q + L ++ Sbjct: 327 VVEFQGVGRDITECRQAEESLRQSEARLNLALEA 360 >gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 591 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 186/398 (46%), Gaps = 26/398 (6%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 K ++ E E ++ ++ + + QL S+L+ +G+ +I+ G IL Sbjct: 218 VRKQDEVGELGHAINAMAESLEVQMTR--IRQNESQLESVLDNMINGVMMIDPAGKILLM 275 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 +R +L G +++ + + E ++ + E L + + EE+ Sbjct: 276 SRRAGELLGISSGELVGRNYA---EAKQQYELSQLIQEALEGREH--IREEITFYFPEER 330 Query: 538 LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 LL L ++ L + D++ ++ + +S+F+A VSHE Sbjct: 331 LLELNLVPINQENQEFGGVLLVLADVTAIRRLE--------------RMRSEFVANVSHE 376 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 ++TP+ A+ GF+E + + I + + ++ D+L +SKIES ++ Sbjct: 377 LKTPIAAVKGFAETLLGGAVN--DEETARSFLQIIYDESDRLNRLIGDILALSKIESKRV 434 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L+F PV +D +++ +++++ A +K I ++ + + + AD ++QI +N+++N Sbjct: 435 PLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHGL-YVEADEDRLRQIMMNVIANG 493 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +++TP GG++ ++ + + +++ DTG+G+ +L + + F ++ ++ GTG Sbjct: 494 VNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDLPRIFERFYRVDKARSRSSGGTG 553 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 LGL + K +V+ + G + S G+ I P+ Sbjct: 554 LGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELPVLQQ 591 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 15/175 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G + +S + +G + +++G + + I + L+ + + T Sbjct: 266 IDPAGKILLMSRRAGELLGISSGELVGRNYAEAKQQYELSQ--LIQEALEGREHIREEIT 323 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + E L +L +PI N+EF G + +RL++ S Sbjct: 324 FYFPEERLL----ELNLVPINQENQEFGGVL---------LVLADVTAIRRLERMRSEFV 370 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 F++ + + S + + D L +L Sbjct: 371 ANVSHELKTPIAAVKGFAETLLGGAVNDEETARSFLQIIYDESDRLNRLIGDILA 425 >gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 605 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 14/387 (3%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R + + +E + + D I+ R G + + A L G PV ++ Sbjct: 185 ETLMRTSASMLNVEENRYRLLARHMCDVISRHRRNGAVQFISPAAESLLGVPVSELQGHG 244 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---------TKEEKLLSLRIIIKK 547 + L Q++E + + + + Sbjct: 245 LFDRVHVADRPAYLTALAAAALGKGAQSVEFRLRRDAASDAEFEGHPSGNFIWVEMRCQP 304 Query: 548 L----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 L P M D+++ KQ+++ L A+ AE+ + K+ FLA +SHE+RTPL AI Sbjct: 305 LEPSSPAEPEVVAVMRDVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAI 364 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFS++I + PL R EYA I+ SG +L +VN +LD+SK+ESG + EP + Sbjct: 365 IGFSDMIVQEATLPLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFA 424 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 E + +L+ L A + I + T N+P+++ D R+ +QI LN++SNAI FT GG Sbjct: 425 PREVLLSGSNLLALKARDNDIELVTRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGG 484 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ IS ++LRV D GVG+ +L++ PF Q + Q R EGTGLGL + K+ Sbjct: 485 RVTISARVE-GARMVLRVVDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKS 543 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V + G+ + S +GT + ++ PL Sbjct: 544 LVGLHGGEIDVQSKVEEGTTVTVMLPL 570 >gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1375 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 124/661 (18%), Positives = 222/661 (33%), Gaps = 43/661 (6%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNK 239 + + +++ + + + Y S Sbjct: 591 DLAWDIAEHKKAEESLRSSEERLRIISDNTYDWEYWRAPDGSYLWVSPSCKTVSGYSPED 650 Query: 240 VSSLTEY----YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQ 293 + H DD ++ + + ++ DF + + Sbjct: 651 FTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNPDHQELDFRIVKPTGEVVWIGHTCKPIF 710 Query: 294 NN----SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348 ++ E E D+ PI + + G +F N F Sbjct: 711 SDDGLFLGRRGCNRDTTERKRSEEAIRESEERYRLLFDQSPIGIVNFDNVGTIFDLNSKF 770 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + D + L D + N L + + + Sbjct: 771 AEIIG-APKDKLIGLNMPKDLTDLKLIEAVNTALAGTLGIFEGNYTSVT---------GR 820 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + Q + I + + + + + + L G Sbjct: 821 KTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLRERELFLLETQRIARVGGWKA 880 Query: 469 NREGIILST----NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 N E L NR + GY F + L ++L+ Sbjct: 881 NIETNFLFWTDEVNRIIEMPTGYKPSLSEGLSF---YAPEFLPEIREMLKKVLNEGSSAE 937 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESS 583 LE + K LR + + + T DI E K+ + +L++A+ AE S Sbjct: 938 LECEVITGRGTRKWTHLRAVGRIVEKGQSLVLGTFQDIDERKKVELELNNARLKAEAASK 997 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTPL ++G +++++ + EY +S + ++ D Sbjct: 998 AKSEFLANMSHEIRTPLNGVLGMLQLLESTS----KDAEQDEYIEAAKKSSTRLTRLLAD 1053 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LD+SKIE+GKM L S + + L +L EK + + +P R++ D Sbjct: 1054 ILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVKEKGLKLDFVIDELLPARLVGDQI 1113 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAM 757 ++QI N++ NAI FT +G + + H + V+ V DTG+G+ + + Sbjct: 1114 RLQQILFNLVGNAIKFTETG-DVRVEACHLPCSNDDIQRVLFIVSDTGIGIAQGMIAQVF 1172 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +PF Q S R +G GLGL + + +V G I ST GT + PL S P Sbjct: 1173 EPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAIDSTEGTGTTFYLSLPLKH-SAPS 1231 Query: 818 D 818 D Sbjct: 1232 D 1232 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 54/547 (9%), Positives = 151/547 (27%), Gaps = 59/547 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W++DA + ++ + K +G +M+G R+ D + + + + Sbjct: 335 IWSMDADYHTAFVNSAMAKMLGYSVEEMLGKRVDDFFFDEDMVFHAQRMKVRQSGGDEVY 394 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----------- 194 + +G+ L+ + +A + F+G F + Sbjct: 395 ERRFKRKDGSQLWTLV--SAKALKDSGGSFAG--SFAMFTDITDRKRAENIIQARLRLMQ 450 Query: 195 -ALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 A L++ + + + +++ + + + + + L Sbjct: 451 LAASCSLEELLIATVDEAEVLTNSKVGFYHYLDEDQKTLLLQAWSTRTIREMCQAEGIGL 510 Query: 244 ----------TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL- 292 + + V+ + L + + + + + Q L Sbjct: 511 HYDVAKAGVWVDCILSRQAVIHNDYEALTHKKGMPEGHPPVIRELVVPVFRQNQIVAILG 570 Query: 293 ---------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-----H 338 + + + +E + E + + + Sbjct: 571 VGNKPIDYDNADIEAITLLADLAWDIAEHKKAEESLRSSEERLRIISDNTYDWEYWRAPD 630 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G+ + +PS ++ Y D A L + P D A ++ + Sbjct: 631 GSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNPDHQELD- 689 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 I + + + + + G + + + ++ + + + Sbjct: 690 --FRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCNRDTTERKRSEEAIRESEERYRLLF 747 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + GI + G I N +++ G P + ++ L T + + L+ Sbjct: 748 DQSPIGIVNFDNVGTIFDLNSKFAEIIGAPKDKLIGLNMPKDL---TDLKLIEAVNTALA 804 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576 L T + ++ + + + DI+E KQ + L + Sbjct: 805 GTLGIFEGNYTSVTGRKTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLREREL 864 Query: 577 IAEKESS 583 + Sbjct: 865 FLLETQR 871 Score = 130 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 38/292 (13%), Positives = 84/292 (28%), Gaps = 16/292 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 N+ +D P P F N + L K + Sbjct: 180 EETRRVEAERELQRRANMLQGIIDAIPSPIFAKDEDLRYTTCNTALEKLLGAKPASLL-- 237 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G S P+ + + + + + F + + Sbjct: 238 --GKSVFDIYPRAQAEVYDRMDRELLQQGGVQEYEGHMANAE---GSLRNILFHKAKCHD 292 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + G+ + + ++ + +++ + I++ ++GI ++ + N A++ Sbjct: 293 FLNDACGLVGVMTDITERKLTEDALKMSEERYRLIIDTANEGIWSMDADYHTAFVNSAMA 352 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 K+ GY VE++L K F + S K+ L Sbjct: 353 KMLGYSVEEMLGKRVDDFFFDEDMVFHAQRMKVRQSGGDEV---YERRFKRKDGSQLWTL 409 Query: 543 IIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA-KKIAEKESSHKSDFL 589 + K L S DI++ K+ +N + + + S + L Sbjct: 410 VSAKALKDSGGSFAGSFAMFTDITDRKRAENIIQARLRLMQLAASCSLEELL 461 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 44/541 (8%), Positives = 131/541 (24%), Gaps = 52/541 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144 + D + L K +G ++G + D+ + + + +LL++ Sbjct: 209 IFAKDEDLRYTTCNTALEKLLGAKPASLLGKSVFDIYPRAQAEVYDRMDRELLQQGGVQE 268 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + EG+ I + + G G++ K ++++ Sbjct: 269 YEGHMANAEGSLRN--ILFHKAKCHDFLNDACGL--VGVMTDITERKLTEDALKMSEERY 324 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + Y S ++ + + + +D++ + Sbjct: 325 RLIIDTANEGIWSMDADYHTAFVNSAMAKMLGYSVEEMLGKRVDDFFFDEDMVFHAQRMK 384 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + F + +Q L+++ + + + Sbjct: 385 VRQSGGDEVYERRFKRKDGSQLWTLVSAKALKDSGGSFAGSFAMFTDITDRKRAENIIQA 444 Query: 322 TPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDD------------IEIAGG 365 + + + S + Y D I Sbjct: 445 RLRLMQLAASCSLEELLIATVDEAEVLTNSKVGFYHYLDEDQKTLLLQAWSTRTIREMCQ 504 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF- 424 + ++ +L R A H + + + Q Sbjct: 505 AEGIGLHYDVAKAGVWVDCILSRQAVIHNDYEALTHKKGMPEGHPPVIRELVVPVFRQNQ 564 Query: 425 -------------------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + + + + +L I + T D Sbjct: 565 IVAILGVGNKPIDYDNADIEAITLLADLAWDIAEHKKAEESLRSSEERLRIISDNTYDWE 624 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +G L + + + GY ED + + + ++ ++ Sbjct: 625 YWRAPDGSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVK-VVDSYNP 683 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIA 578 E +++ + K + D +E K+ + + +++ Sbjct: 684 DHQELDFRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCNRDTTERKRSEEAIRESEERY 743 Query: 579 E 579 Sbjct: 744 R 744 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 47/379 (12%), Positives = 90/379 (23%), Gaps = 21/379 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTW 143 W G +S G G + ++ D ++ N Sbjct: 626 WRA-PDGSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNPD 684 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + ++ T V I PI+S + F G RG + +++ Sbjct: 685 HQELDFRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCN--RDTTERKRSEEAIRESEER 742 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + L + IF S K+K+ L D L Sbjct: 743 YRLLFDQSPIGIVNFDNVGTIFDLNSKFAEIIGAPKDKLIGLNMPKDLTDLKLIEAVNTA 802 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEG 318 L T + + G + E Sbjct: 803 LAGTLGIFEGNYTSVTGRKTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLRER 862 Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E ET + + N + + + + ++ GLS AP+ Sbjct: 863 ELFLLETQRIARVGGWKANIETNFLFWTDEVNRIIEMPTGYKPSLSEGLS--FYAPEFLP 920 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ML + +A I T + G + Sbjct: 921 EIRE---MLKKVLNEGSSAELECEVITGRGTRKW--THLRAVGRIVEKGQSLVLGTFQDI 975 Query: 438 VDTRINKRKMEIEVMQLCS 456 + + ++E+ +L + Sbjct: 976 DERKKV--ELELNNARLKA 992 >gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 1070 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 110/533 (20%), Positives = 207/533 (38%), Gaps = 24/533 (4%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFL 349 +L + +F + + +SA E ++ F + G + +NP+ Sbjct: 283 SLMALAVGTFLWRNMLARDRISAELRSSEERYRTLFERSLDSIFLIDDEGQVSESNPAAQ 342 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 L ++ ++++ + N + L + R I + E Sbjct: 343 SLVEHS-----IGHFAMNSIFELLAPEGENLQAMLDLVNAARQ---GHRAQQEIIISGEK 394 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + + + + ++ ++ + + A + I I+ Sbjct: 395 PIYLDVHAVS-----MDETHILLVARNITRRKTSELRLRESEQRFRDVSNAAGEYIWEID 449 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 +G V + GYP E++L + + + + I+ + Sbjct: 450 SDGCFTFLTDRVVDVLGYPAEELLGRSPFSLIPPEDAQKVQRVFSRIVRA-QKSFSGFSY 508 Query: 530 LGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 T+ ++ L I + Y DI+ K+ + L A++ AE S K Sbjct: 509 RCITRSGTIIWLEISGVPIVGPYGTVQGYRGVGLDITLRKRAEEALQEARRQAEDSSQLK 568 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA +SHE+RTPL AI+G+SE+++ + I +G +L ++ND+L Sbjct: 569 SMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQEMVGD-LAKIHSAGEHLLRLINDVL 627 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 DISKIE+GKM+++ E V++ V + + + + N+ + DL V+ Sbjct: 628 DISKIEAGKMDVYLEEVNIARLVRDVADTITPLVRKNKNHFHLECGQNLGAMHTDLTKVR 687 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQ 762 QI N+L+NA FT +G I + + E + +V DTG+G+ L + F Q Sbjct: 688 QILFNLLNNAAKFTQNGS-ITLRVQCQEDREIPTISFQVIDTGIGIEQQRLSSLFQSFTQ 746 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 S + GTGLGL ++++ G S P G+ + PL H Sbjct: 747 ADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSKPGAGSTFCLTLPLIRQPH 799 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 5/167 (2%) Query: 60 ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119 S +SE F D + W ID+ G +++ + +G A +++G Sbjct: 420 RKTSELRLRESEQRFR-DVSNAAGEYIWEIDSDGCFTFLTDRVVDVLGYPAEELLGRSPF 478 Query: 120 DVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 + +++ Q ++ G + I + + ++++ +PI G+ Sbjct: 479 SLIPPEDAQKVQRVFSRIVRAQKSFSGFS-YRCITRSGTIIWLEISGVPIVGPYGTVQGY 537 Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 RG G+ + + ++ ++K + + Sbjct: 538 RGVGL--DITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTP 582 >gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein ) [Phenylobacterium zucineum HLK1] Length = 621 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 126/600 (21%), Positives = 224/600 (37%), Gaps = 53/600 (8%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 H+ + LL + + L L Sbjct: 25 HRFARIGVLCALLLLAVYAVAALARFGGGAQSAAEQLAWIAAPLLVAIGLGVLLLVESLR 84 Query: 309 -PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA--GG 365 A F + E V+ + + + + + + G Sbjct: 85 VERAHAAFSDSEQRFRMAVEAARCGIWEWDL--------AADKIFMSEVTAALFGWRGGV 136 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQF 424 + ++S + + + + Sbjct: 137 VDGQQVLDRVSPGHRDGLREALANAAIYGDFDVSFRVPSLAGGRPIWIDARGRGFGEAPE 196 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 G+ + + R+ + + + +L +E+ S+ + +R G +L NR Sbjct: 197 GGYARIIGVALDVTEERLAQARAQQAESRLRDAIESVSEAFVLWDRHGRLLMCNRNYRDY 256 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 F + + + + + + + + + + Sbjct: 257 FKLESGLL----LAGVGREQVERAARMAVRQEYPAPGDRRGVREAEL--ADGRWVQISER 310 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE----------------------- 581 +T DI+ K ++ ++ + Sbjct: 311 PT---AEGGLVVTAADITVLKAQEEARRLKEEELRRAVFNLERSQEQLSELARKYEAEKI 367 Query: 582 -----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 S KS+FLA +SHE+RTPL AI GFSE++ + +GPLG+ RY +YA I SG Sbjct: 368 RAEGASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDILNSGQH 427 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++ND+LD+SKIE+GKM+L F+P SL+E +A+ LV+ A + + F +P Sbjct: 428 LLALINDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTLVLDFVE-LPE 486 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753 + AD R+VKQ+ LN+LSNAI FTP GG+I + + + V + V+DTG+G+ +L Sbjct: 487 VEADYRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGIAPEDL 546 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 E+ +PF Q+ + +GTGLGL L KA V+ + G + S P +GT P+ + Sbjct: 547 ERLARPFEQVESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSLPVRQS 606 >gi|196234229|ref|ZP_03133060.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196221688|gb|EDY16227.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 1174 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 125/807 (15%), Positives = 252/807 (31%), Gaps = 105/807 (13%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143 + G + + L + G + + ++ DV+ L++D + D L+ ++T Sbjct: 265 IFQTTPDGRILTANRALARMYGYDTPEHLIEKVTDVAAQLYVDSTQRQALLDALRVEDTV 324 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD---NDPRALGKRL 200 + + + I G V R L L Sbjct: 325 SNFEFEV-VRADGRLIWVRENVRAIRDEKGGLRYLEG--TVEDVSDVWWGEQRRRLQYAL 381 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS-----------------PPPHLRMKNKVSSL 243 + +++ + + + M+ +L Sbjct: 382 ARVLGDSATVEEARPRIISTICKALGWDAGIFFEATSGALHAIEMWHATDIEMEELRMAL 441 Query: 244 TEYYAHKDDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQY------------------- 283 H+ L + L E+ + +L Sbjct: 442 PHLVYHRGHRLAGEAWAEGEPKWIAELSEELHYANADLLLACGMSSVFAVPISVDGEVRY 501 Query: 284 --------TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 LQ S + E + Sbjct: 502 VLELFSSKIALPDSELLQVLGSISSQLGHLVERKLAEEALRRSEMRKAAILRSALDCIIT 561 Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTC 393 + G + NP+ Y + + + L+ L+ L +++ + + + Sbjct: 562 FDLEGKITEFNPAAERAFGYSAEEAMGRE--LAGLIIPETLRESHRRGLALYNATTVGSM 619 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 L ++ + I + P + + + +R + Sbjct: 620 AGRRMELVAMRADGSEFPIEMSISRFVIDGKPMFTAY---MRDITERQQAERI----TSE 672 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +++ ++D I +G I+S N +++GY E+++ K + + + L Sbjct: 673 LAAVVANSNDAIVACTLDGKIVSWNVGAERIYGYAAEEVIGKQLDILIPPDRLDEFPQAL 732 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569 T + T+ K+ K LS+ + + DI+E K+ + Sbjct: 733 TMVKRG--ESVANYETMRVRKDGKRLSMSLTDSPIRSEGGRVTGLSSIARDITERKRLEE 790 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY--IEYA 627 +L ++K+ ++H+ LTAI+G+S+++ Q + R ++ Sbjct: 791 ELLQSQKMD-----AVGRLAGGIAHDFNNILTAILGYSDLLIGQI-----DERQWMYKHL 840 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + I ++ + + + LL S+ + L ++++ V ++Q E I I Sbjct: 841 SEIRKAADFAASLTHQLLAFSR----RQPLFLRVFNINDTVKNMQKMLQRVIGEH-IQIH 895 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTS 733 T I R+ AD ++Q+ LN+ NA P+GG I I T + Sbjct: 896 THLKAEIGRLKADPSQLEQVLLNLCVNARDAMPNGGSISIETADVTYFLDDFYSVNEMPA 955 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E V L + DTG GMT + +PF +G+GTGLGL +V ++G Sbjct: 956 GEYVKLTICDTGTGMTADVKKHIFEPFFTTK----EKGQGTGLGLATCYGIVKQSLGYIT 1011 Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S GT I P D S I Sbjct: 1012 VDSQVGVGTTFSIYLPRVDESGEKSSI 1038 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 40/402 (9%), Positives = 103/402 (25%), Gaps = 27/402 (6%) Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 H + + + + L + T+ + T + Sbjct: 9 TSSSHRRIGSDAFAFGLVAAFIAVLSLGLWWLWKTDVEWAHVEDRMTAWTQAAETSGELG 68 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVD 327 P + + + + + S + VD Sbjct: 69 PILASIYALGVQPLPPGEKGNPDAVVAIRKTYEGKYGIVAERVRSLAIAADRTTVLKEVD 128 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + + L S + L+ L + A K + Sbjct: 129 NIQTAALAMLE-RV-----ATLRGPDRPSDTEPGDPERLNEALAGLQSRYQEAAKALQRL 182 Query: 388 RSDRTCIAASARLHTIQWNREN-----SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + A I+ + + A + D + Sbjct: 183 QQHERNFATELSEERIELAEKYHNLAYGVCGVLFLIFIAGVGSLLRRHREVRKNFADLDV 242 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ + S+ + +GI +G IL+ NRA+++++GY + L + T Sbjct: 243 LQKAQRAAEHEFHSLFDNAIEGIFQTTPDGRILTANRALARMYGYDTPEHLIEKVTDVAA 302 Query: 503 --QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556 + L + D E + + +L+ +R ++ + Sbjct: 303 QLYVDSTQRQALLDALRVEDTVSNFEFEVV--RADGRLIWVRENVRAIRDEKGGLRYLEG 360 Query: 557 TMHDIS------EWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 T+ D+S + ++ + L+ + + ++ + Sbjct: 361 TVEDVSDVWWGEQRRRLQYALARVLGDSATVEEARPRIISTI 402 >gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 617 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 116/390 (29%), Positives = 186/390 (47%), Gaps = 4/390 (1%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSK 483 + ++ E + ++ + SI A I++++ ++ N A Sbjct: 220 RQQELYEQLKREVEVRQEAEQAVRATEESFQSIFYAAPLPISLVDPSTFRVMQANMAALA 279 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 LFG + F ++ L +L +E + Sbjct: 280 LFGIDETEADGFDVREFFDEEDLPARLDRL--VLGGRAGAPVEFCLKRRDGAVIWALVSA 337 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + + D++ +E L A+ A S KS+FLA +SHE+RTPL AI Sbjct: 338 AVVSFHGRRALLIGIQDVTVRHKEAEALREARDQATAASRSKSEFLANMSHELRTPLNAI 397 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFSE ++ + FGP+GNPRY EYA I SG +L ++ND+LD+SKIE+G LH + Sbjct: 398 IGFSEALERELFGPVGNPRYREYAEDIHDSGVHLLSLINDILDLSKIEAGHFKLHEDETD 457 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 LD V+ A +V+ A + I I +L D R++KQ+ +N++SNA+ F+P G Sbjct: 458 LDHIVAAATRIVRHRAQQANIAIECRLPQPPLAVLVDERALKQVLINLVSNAVKFSPDGS 517 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I++ T+ + + V D GVG+ ++ +A+ PF Q+ S EGTGLGLPLAK Sbjct: 518 LILVEANVTTQG-LRISVADKGVGIAPEDIPRALTPFTQLDGSLSRAHEGTGLGLPLAKH 576 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + + + GK +I S GT + + PL Sbjct: 577 LTELHDGKLFIESAVDVGTTVYVDLPLSRV 606 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 25/197 (12%), Positives = 52/197 (26%), Gaps = 9/197 (4%) Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 E + N + T Q ++ + R + E + PI Sbjct: 202 ELVRSANRLRRTGFLTLMRQQELYEQLKREVEVRQEAEQAVRATEESFQSIFYAAPLPIS 261 Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDD--------IEIAGGLSTLLDAPKLSDNNAIKPV 384 S + AN + L L + + + L A Sbjct: 262 LVDPSTFRVMQANMAALALFGIDETEADGFDVREFFDEEDLPARLDRLVLGGRAGAPVEF 321 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L R D I A + ++ +L + ++ E + + + ++ Sbjct: 322 CLKRRDGAVIWALVSAAVVSFHGRRALLIGIQDVTVRHKEAEALREARDQATAASRSKSE 381 Query: 445 RKMEIEVMQLCSILEAT 461 + +L + L A Sbjct: 382 F-LANMSHELRTPLNAI 397 >gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2] Length = 1267 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 116/499 (23%), Positives = 202/499 (40%), Gaps = 28/499 (5%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + + + Y N + L Y + + A L + + + + + Sbjct: 357 ILLDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDPDEIEREAERLSQKLGEHVEPG 416 Query: 393 CIAASA---------RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 R T + + +Q G+ + + Sbjct: 417 LEVFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGLRDQQGRLTGVLGMAYDISE---- 472 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 K+E L I+ + D IA I+ G + N+A ++ G P++ K + ++E Sbjct: 473 HVKVEKSRNLLLDIIGSAKDLIASIDHNGKVAYINKAGKRMLGLPLDY-KPKDYKSYVEP 531 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561 + + + + + E L ++ +SL I+ + +S DI Sbjct: 532 SMYLYLIKGSRIAMKMGYWEG-EAELLTQAGDKVNVSLVIVAHPYRNTGELYFSCIARDI 590 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K + +L A + AE+ ++ KS FLA VSHEIRTPL IIG S++++ P Sbjct: 591 TEQKHIQEELIQATQEAEQANAAKSRFLAMVSHEIRTPLNGIIGLSQLMRRTGLSP---- 646 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y + + S +L I+NDLLD SKIE+GK+ + E +S + ++ Sbjct: 647 SQKDYMDKLGNSSESLLRIINDLLDFSKIEAGKVEVERVAFQPQEMLSRLTDQLSVFMGG 706 Query: 682 K-RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEE 736 K + +P +L D V+QI LN+ NA+ FT G + + + + Sbjct: 707 KEQFEFILEVPEQLPTTLLGDQMRVEQILLNLCMNAVKFTERGHVKLALEVMEQCSDGLK 766 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+GMT +++K PF Q S + GTGLGL +A +V GK + S Sbjct: 767 LQFTVEDTGIGMTKKQIDKLFTPFTQADGSTTRKYGGTGLGLVIANGLVKMMGGKIQVDS 826 Query: 797 TPAKGTLIEI--IFPLYDT 813 P G+ FP+ + Sbjct: 827 EPGLGSRFSFVLSFPVLSS 845 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 22/160 (13%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMN 510 +L +I+ +++ + N+A KL GY +++ P Sbjct: 344 RLEAIINQNEYSFILLDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDPDEIEREAE 403 Query: 511 HYLTEILSLDLRQT------------LEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554 ++ E+ K+ + +R L Sbjct: 404 RLSQKLGEHVEPGLEVFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGLRDQQGRLTGV 463 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +DISE + + + I D +A + H Sbjct: 464 LGMAYDISEHVKVEKSRNLLLDIIGSA----KDLIASIDH 499 Score = 41.6 bits (96), Expect = 0.60, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 67/257 (26%), Gaps = 23/257 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNH 132 +D + + +++ K IG ++ G + ++P Sbjct: 359 LDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDPDEIEREAERLSQKLGEHVEPGLE 418 Query: 133 IGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRV 189 + +L++ + ++ + T +GT + V L + +G G + I +V Sbjct: 419 VFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGL--RDQQGRLTGVLGMAYDISEHVKV 476 Query: 190 DNDPRALGKR--LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + L K + + + K + K+ V Y Sbjct: 477 EKSRNLLLDIIGSAKDLIASIDHNGKVAYINKAGKRMLGLPLDYKPKDYKSYVEPSMYLY 536 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 K + + E + + + + G L + Sbjct: 537 LIKGSRIAMKMGYWEGEAELLTQAGDKVNVSLVIVAHPYRNTGELYFSCIARDITEQKHI 596 Query: 308 HPSLSAYFDEGENLTPE 324 L E E Sbjct: 597 QEELIQATQEAEQANAA 613 >gi|192290144|ref|YP_001990749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192283893|gb|ACF00274.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 903 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 110/598 (18%), Positives = 232/598 (38%), Gaps = 47/598 (7%) Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L + + + H +++ S L + Sbjct: 41 SLSVMAGRIASQHTRAWEPPGVGHGLDVP--WWIFVISLAVGLSIAGLIELQLSRYER-R 97 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + V+ S G + N + L + + I + L+ Sbjct: 98 NAHKLRQAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGHTAERAIGQN--ATELMV 155 Query: 372 APKLSDNN-------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 L D A R++ T + + + I+ + + M Sbjct: 156 PDDLRDEEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIRADDGRLIGMAASMR 215 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + + ++ ++ +R ++E + +ILE + + + G I Sbjct: 216 DITD-LVQAEREVHDLNAALERQVAERTCQLEKTLTLQTAILERAAYAVIATDVTGTITL 274 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGST 533 N A ++ GY ED++ + + + I L+ + Sbjct: 275 FNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLARND 334 Query: 534 KE----------EKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579 + + R+ + +L + D++E + +++L A+ AE Sbjct: 335 PDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARASAE 394 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + S+ K+DFLA +SHEIRTPL IIG+++++ R I + + + Sbjct: 395 QASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQ---VMRIFEASDSLRV 451 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 I++D+LD SKIE+ + L +P+ ++E ++ S+++ A+EK + + + P ++ Sbjct: 452 IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVLIG 511 Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKA 756 D ++Q+ LN+++NA+ FT +G ++I+S + + + V DTG+G++ + Sbjct: 512 DAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQKGL 571 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812 K F Q + + GTGLGL +++ +V A G+ I S P G+ E+ P+ + Sbjct: 572 FKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 22/279 (7%), Positives = 62/279 (22%), Gaps = 41/279 (14%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150 G + ++ + G+ A + IG ++ + D + + + T Sbjct: 124 DGTVLSWNKTAERLFGHTAERAIGQNATELMVPDDLRDEEQQMLSGISDGTAFAYLWTKR 183 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDK---- 202 L V + ++ PI + + G + L L++ Sbjct: 184 KRANGTL-VDVAVSISPIRADDGRLIGMA--ASMRDITDLVQAEREVHDLNAALERQVAE 240 Query: 203 ----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAH 249 + + E I + ++ + + H Sbjct: 241 RTCQLEKTLTLQTAILERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH 300 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN----------------QYTKKQYFGTLQ 293 D L + S + + L+ Sbjct: 301 DSDELAARAEAMRKEGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLR 360 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + L + +++ + ++ Sbjct: 361 TKTGVNLGVLGIAVDLTEQLKYEDELKAARASAEQASAA 399 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 36/368 (9%), Positives = 77/368 (20%), Gaps = 39/368 (10%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139 R D G + + + +G A +IG + D + +++ Sbjct: 257 ERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH--DSDELAARAEAMRK 314 Query: 140 QNTWYG---------------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + T +W I+ +P L + ++ G G + Sbjct: 315 EGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAV 374 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 K K + ++P + + Sbjct: 375 --DLTEQLKYEDELKAARASAEQASAAKADFLANMSH-----EIRTPLNGIIGYADLVLE 427 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 E A + S + + DF I T + + + Sbjct: 428 DETLAPDTRRQVMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASII 487 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVD 358 + + P + G L N + T Sbjct: 488 EPKADEKGLKLIATA---------QATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVEL 538 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + G + L+ + I + + A + L + Sbjct: 539 IVSCIGRVDHLVRLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQR 598 Query: 419 EKANQFPE 426 E Sbjct: 599 IVQAMHGE 606 >gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine kinase / response regulator hybrid [Rhodopirellula baltica SH 1] Length = 871 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 99/511 (19%), Positives = 199/511 (38%), Gaps = 42/511 (8%) Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G +AN S+L + AG L P+++ + ++ + + Sbjct: 58 DGRRVFANDSYLKWRGVTWQEL---AGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVE 114 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + + ++ + + + + + + ++ + E L ++ Sbjct: 115 ----SAKLADDSIGWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 170 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 L D I + + + + A++ FG V+++ + + Sbjct: 171 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRV 230 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + + + L + DI++ K+ + L Sbjct: 231 IETGEALVDRVERET-WPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALH 289 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A ++A+ + KS+FLA +SHEIRTP+ A+IG ++++ + +P +Y I Sbjct: 290 EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL----DPDQQDYVQIIQE 345 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S N +L ++ND+LD SKIE+ ++ L P SL + + + A+EK + ++ + Sbjct: 346 SSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISP 405 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI----------------------IIST 729 +P ++ D V+Q+ N++ NAI FT GG S Sbjct: 406 ELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERADRDLAATHSGRESP 465 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ L V D+G+G+ + + + PF Q S R GTGLGL +++ +V+ Sbjct: 466 ERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMG 525 Query: 790 GKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818 G+ ++ S GT P+ S P++ Sbjct: 526 GELHLQSEVGVGTTFSFQLKMPVCPASMPNE 556 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 27/259 (10%), Positives = 64/259 (24%), Gaps = 23/259 (8%) Query: 90 DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147 D +S + G ++ G D+ H + +++ + Sbjct: 182 DIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETGEALVDRV 241 Query: 148 TL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 WP +P+ + E G FGI A + Sbjct: 242 ERETWP---DREDTWCMTTKMPLRNDTGEIIGT--FGISRDITDLKRSEAALHEAVRMAD 296 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + K + + P + L++ D + ++ Sbjct: 297 AANRSKSEFLANMSHEIR-------TPMNALIGMADLLSQTKLDPDQQDYVQIIQESSNG 349 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 L D + + + + + K L + + + +++PE Sbjct: 350 --LLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISPEL 407 Query: 326 VDKCPIPFFVYSHGNLFYA 344 D+ + G + Sbjct: 408 PDRL-----IGDPGRVRQV 421 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 20/245 (8%), Positives = 63/245 (25%), Gaps = 7/245 (2%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149 A G ++ K G ++ G D+ +++ + + + Sbjct: 57 ADGRRVFANDSYLKWRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVESA 116 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + I+ ++ + G + F V + + L K Sbjct: 117 KLADDSIG--WIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTLLANI 174 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY---AHKDDVLKTEKYPLLTSE 265 ++ + + ++V T+ + + ++ ++ + Sbjct: 175 PDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETG 234 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 E+ + E + L+N++ E + + + Sbjct: 235 EALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALHEAVRM 294 Query: 326 VDKCP 330 D Sbjct: 295 ADAAN 299 >gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Microcoleus chthonoplastes PCC 7420] Length = 657 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 176/382 (46%), Gaps = 23/382 (6%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + ++++ K + Q ++ DGI +I+ GI+ N A LF +++L Sbjct: 159 QQDNLEKEQIKAALAKSETQFQVLISKNPDGIVVIDSGGIVRFINPAALSLFSRQEDELL 218 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + + E T ++ +R++ + Sbjct: 219 GQVLGFPVVGEDNT------------------EVDVRTGTGANRVAQMRVVEIEWQGKKG 260 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 Y +++ DI+E KQ + + + AE + K +FLA VSHE+RTPL I+G+S++++ + Sbjct: 261 YLVSLRDITEQKQVEEERIQLLEKAEAANRIKDEFLAIVSHELRTPLNPILGWSKLLRTR 320 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + L + + I+R+ +L +++DLLD+S+I GK+NL V L + AI Sbjct: 321 K---LNQDKVDQALETIERNASLQAQLIDDLLDVSRILRGKLNLQTLRVDLVRVIQAAIE 377 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++L A K I I T + + + D ++Q+ N+LSNA+ FTP GG+I + Sbjct: 378 TMRLAAAAKSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQEID 437 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + ++V DTG G++ F Q ++ G GLGL + + +++ + G+ Sbjct: 438 S-QAQIQVSDTGQGISPDFFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGRIE 496 Query: 794 IFST-PAKGTLIEIIFPLYDTS 814 S +G + PL S Sbjct: 497 AESEGIGQGATFTVTLPLMPDS 518 >gi|116754787|ref|YP_843905.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] gi|116666238|gb|ABK15265.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta thermophila PT] Length = 761 Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats. Identities = 111/755 (14%), Positives = 246/755 (32%), Gaps = 68/755 (9%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 ++ + +G +++G D I T + +G Sbjct: 34 IEYANPAFAHMLGFSLSEIVGKSTEDFLHPDDIPLLLESRAKRLEGLTTSYEVRFLRKDG 93 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + VP+ + P NR G ++ K ++ + E Sbjct: 94 SI--VPVLITGAPRIVDNRP---AGGILVITDLTDYYSVLRQLKNSQRRLMDILEFMPDP 148 Query: 215 SSVEKEKYDIFSQQSPPPHLR-------------------MKNKVSSLTEYYAHKDDVLK 255 + + L + L + H D Sbjct: 149 ALGMDMDGRVIIWNRALEALTGVRKEEMLGKGNYECAIPFYGYRRPVLADLVLHGYDESM 208 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-- 313 + +Y L + L + T + ++ + + + Sbjct: 209 SREYRNLQRDGDVLTAEVFIPTFGPEGSHLWLKAALIYDSEGRIEGAIEVIRDITENVKR 268 Query: 314 --YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E V+ P + G L + N ++ ++ D + + Sbjct: 269 LNALSLSEARYRSIVEGMPFLVCRFDRDGVLTFVNENYCNYFGFRREDIVGRSFL----- 323 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + ++ + +R H + E + Q E + Sbjct: 324 --ELIPEDEREAVLERFRGLTRERPYVTYTHRV-KRGEEIRWQRWTDRAIFGQNGEVLEY 380 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + + + + + E+T+ GIAI+ R+ + NRA ++ GY + Sbjct: 381 QSLGEDITAEKNMEDALRESEHRFRVLAESTAAGIAIM-RDERFVYVNRAGEEMSGYSRD 439 Query: 491 DILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ P + + + + Y ++ E + + + + +L Sbjct: 440 ELIGAPVWMVVHPEDAAWLKKMYSRKLRGEPTPPRYEFRIITKNGDVRWVEYASGTLELG 499 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKK-----------IAEKESSHKSDFLARVSHEIRT 598 T+ DI+E +Q + +L K+ E+ ++ F+ VSH++R Sbjct: 500 GEMALIGTLIDITERRQAEEELRRFKESLEQMVEERTAELEQRNAEIESFVYTVSHDLRR 559 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I G + + + E + RS + ++ D+L++S+I GK+ Sbjct: 560 PLITISGLA-GLAEFDLEKGNLEKARESLRTVQRSCENMDALLRDILELSRI--GKVTNP 616 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E V + V EAI + ++ +R A +P + D + + +N++ N+I + Sbjct: 617 PEDVPFELLVREAIDQLAEAVKKRSAELRV--AEGMPTVRVDRERLVEALVNLIDNSIKY 674 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T + +I + + VRD G+G+ + EK F ++ + +GTG+GL Sbjct: 675 TGEDTRPVIEIFYRDG---VFCVRDNGIGIPESQREKVFDLFYKVDP----KSDGTGVGL 727 Query: 779 PLAKAMVDANMGKFYIFSTPAKG---TLIEIIFPL 810 + K +++ + G+ +I S G T P+ Sbjct: 728 SIVKRIIEVHGGRIWIESD---GCSWTAFCFTLPV 759 Score = 117 bits (293), Expect = 8e-24, Method: Composition-based stats. Identities = 39/392 (9%), Positives = 92/392 (23%), Gaps = 31/392 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146 +D G + + L G +M+G + + + + DL+ + + Sbjct: 152 MDMDGRVIIWNRALEALTGVRKEEMLGKGNYECAIPFYGYRRPVLADLVLHGYDESMSRE 211 Query: 147 TTLWPIEGTNLYVPID------------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 +G L + L A IY G ++ + Sbjct: 212 YRNLQRDGDVLTAEVFIPTFGPEGSHLWLKAALIYDSEGRIEGA--IEVIRDITENVKRL 269 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKD 251 + ++ + E + R ++ V +D Sbjct: 270 NALSLSEARYRSIVEGMPFLVCRFDRDGVLTFVNENYCNYFGFRREDIVGRSFLELIPED 329 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + E ++ + + E EY S + Sbjct: 330 EREAVLERFRGLTRERPYVTYTHRVKRGEEIRWQRWTDRAIFGQNGEVLEYQSLGEDITA 389 Query: 312 SA----YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E E+ + + Y N + ++ Y + I + Sbjct: 390 EKNMEDALRESEHRFRVLAESTAAGIAIMRDERFVYVNRAGEEMSGYSRDELIGAPVWMV 449 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 D +K + + I N + + Sbjct: 450 V-----HPEDAAWLKKMYSRKLRGEPTPPRYEFRIITKNGDVRWVEYAS---GTLELGGE 501 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 M G + + R + ++ L ++E Sbjct: 502 MALIGTLIDITERRQAEEELRRFKESLEQMVE 533 Score = 87.4 bits (215), Expect = 9e-15, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 87/285 (30%), Gaps = 34/285 (11%) Query: 318 GENLTPETVDKCPIPFFV----YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 L + ++ V + YANP+F + + + + L Sbjct: 7 DRELAFQILNSLGQGVVVSKVVDERWIIEYANPAFAHMLGFSLSEIVGK--STEDFLHPD 64 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + L + + R ++ + + + P + Sbjct: 65 DIPLLLESRAKRL---EGLTTSYEVRF--LRKDGSIVPVLITGAPRIVDNRP--AGGILV 117 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D R+++ +L ILE D ++ +G ++ NRA+ L G E++L Sbjct: 118 ITDLTDYYSVLRQLKNSQRRLMDILEFMPDPALGMDMDGRVIIWNRALEALTGVRKEEML 177 Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K + + L +++ +++ + ++ +L+ + I Sbjct: 178 GKGNYECAIPFYGYR--RPVLADLVLHGYDESMSREYRNLQRDGDVLTAEVFIPTFGPEG 235 Query: 553 ------------------CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + DI+E + N LS ++ Sbjct: 236 SHLWLKAALIYDSEGRIEGAIEVIRDITENVKRLNALSLSEARYR 280 Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 68/522 (13%), Positives = 141/522 (27%), Gaps = 52/522 (9%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 N N S+S Y F D G L ++E G Sbjct: 264 ENVKRLNALSLSEARYRSIVEGMPF--------LVCRFDRDGVLTFVNENYCNYFGFRRE 315 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 ++G ++ + L R+ + T + A I+ + Sbjct: 316 DIVGRSFLELIPEDEREAVLERFRGLTRERPYVTYTHRVKRGEEIRWQRWTDRA--IFGQ 373 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 N E ++ G + + + + +F L E ++ +++ ++ ++ Sbjct: 374 NGEVLEYQSLG--EDITAEKNMEDALRESEHRFRVLAESTAAGIAIMRDERFVYVNRAGE 431 Query: 232 P--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQ 287 + + H +D +K P + +F I N + + Sbjct: 432 EMSGYSRDELIGAPVWMVVHPEDAAWLKKMYSRKLRGEPTPPRYEFRIITKNGDVRWVEY 491 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP- 346 GTL + + +E E++++ L N Sbjct: 492 ASGTL--ELGGEMALIGTLIDITERRQAEEELRRFKESLEQM----VEERTAELEQRNAE 545 Query: 347 --SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 SF+ + + GL+ L + N L R+C A L I Sbjct: 546 IESFVYTVSHDLRRPLITISGLAGLAEFDLEKGNLEKARESLRTVQRSCENMDALLRDI- 604 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + K PE++P + E +D ++ +L + E Sbjct: 605 --------LELSRIGKVTNPPEDVPFELLVREAIDQLAE--AVKKRSAELR-VAEGMPT- 652 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILR-----KPFTVFLEQNTPSVMNHYLTEILSL 519 ++RE R V L I +P ++ + I Sbjct: 653 -VRVDRE-------RLVEALVNLIDNSIKYTGEDTRPVIEIFYRDGVFCVRDNGIGIPES 704 Query: 520 DLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + + + + L I+ + + D Sbjct: 705 QREKVFDLFYKVDPKSDGTGVGLSIVKRIIEVHGGRIWIESD 746 >gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM 12809] Length = 1322 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 105/479 (21%), Positives = 199/479 (41%), Gaps = 35/479 (7%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASA 398 + Y +PS + + + + + + R A Sbjct: 485 RITYVSPSIEQICGFPPEYLLGKPLE----YLVQESDGVIFDHWIENVLRRHGEQRVAEL 540 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 R+ R + + + + + + + +++ +L ++ Sbjct: 541 RI----LKRSGAYLNAEVLAKNMLENNVINGVVVNIRDVTVRKKAEEELK----KLALVM 592 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E + I I + +G I N A K+ GY +E+ L K V +T + L + ++ Sbjct: 593 EQNPNSIVITDIDGNIEFVNPAFEKITGYSLEEALGKNPNVLKTDHTEPAVFEELWKTVT 652 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574 + + K +L II + Y +I+E KQ Sbjct: 653 KG--EVWNGEFVNKKKNGELYIEHAIIAPIMNDRGEIVNYLGMKENITELKQA------- 703 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + AE+ + KS FLA +SHEIRTPL ++GF E++K+ + EY + I S Sbjct: 704 RAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHTPL----DSEQAEYLSTIKFSA 759 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L I+ND+LD+SKIESG M++ ++L + + A+ K + + + + Sbjct: 760 DTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFYAKASAKGVRLYSYIDPQV 819 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMT 749 P +L D + Q+ N+L+NA+ FT +GG I ++ + V++ V DTGVG+ Sbjct: 820 PSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNVELKNETKKTATVLIAVEDTGVGIP 879 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +++ +PF Q+ +S + GTGLGL +++ ++ + S KG+ Sbjct: 880 DGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDIELKSEKGKGSKFYFEL 938 Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats. Identities = 41/417 (9%), Positives = 107/417 (25%), Gaps = 59/417 (14%) Query: 89 IDAHGY-LKEISEELPKTIGNYAFKMIGMRLCDVSD-----ILHIDPNNHIGDLLKRQNT 142 IDA Y + ++ ++IG+ G +++ +D + +LK Sbjct: 322 IDAETYEIILANKAAYRSIGST-----GRTCYELTHHANHPCDGLDHPCPLQTVLKTGAA 376 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----K 198 + + + +++ P+ + + + + D Sbjct: 377 TSVE--HIHFDQSGEKRYVEVHGYPVRNSEGKVIQMIEYSL--DITEKKDAERTLINLNS 432 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP----------------HLRMKNKVSS 242 L++K + E + K + LR+ S Sbjct: 433 ILEQKVAERTEKLEAEVKNRKNAEEKLIANEKYFRQLIANISDIIIIADETLRITYVSPS 492 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQN----- 294 + + + L + L E + E+ + Q + Sbjct: 493 IEQICGFPPEYLLGKPLEYLVQESDGVIFDHWIENVLRRHGEQRVAELRILKRSGAYLNA 552 Query: 295 --------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345 + + + ++ +E +++ P + GN+ + N Sbjct: 553 EVLAKNMLENNVINGVVVNIRDVTVRKKAEEELKKLALVMEQNPNSIVITDIDGNIEFVN 612 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P+F +T Y + + + ++ + + + + Sbjct: 613 PAFEKITGYSLEEALGKNPNV----LKTDHTEPAVFEELWKTVTKGEVWNGE---FVNKK 665 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 I N E + G++ + + + K E L S Sbjct: 666 KNGELYIEHAIIAPIMNDRGEIVNYLGMKENITELKQARAKAEESNRAKSMFLANMS 722 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 33/313 (10%), Positives = 93/313 (29%), Gaps = 32/313 (10%) Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENL--TPETVDKCPIPFFVYSHG--NLFYAN 345 +L+ K+ L + + E + ++ PF+V + AN Sbjct: 274 SSLEETVKKRTGELETQVRIREEQERESFERAQFLTDVIESLAHPFYVIDAETYEIILAN 333 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS---------DNNAIKPVMLYRSDRTCIAA 396 + E+ + D + + Sbjct: 334 KAAYRSIGSTGRTCYELTHHANHPCDGLDHPCPLQTVLKTGAATSVEHIHFDQSGEKRYV 393 Query: 397 SARLHTIQ-WNRENSLAMTFIPFEKANQFPENM--------------PQNGIEPEDVDTR 441 + ++ + + + + E +E E + + Sbjct: 394 EVHGYPVRNSEGKVIQMIEYSLDITEKKDAERTLINLNSILEQKVAERTEKLEAEVKNRK 453 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + K+ ++ SD I I + I + ++ ++ G+P E +L KP + Sbjct: 454 NAEEKLIANEKYFRQLIANISDIIIIADETLRITYVSPSIEQICGFPPEYLLGKPLEYLV 513 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTM 558 +++ + +H++ +L Q + + L+ + + + + + + Sbjct: 514 QESDGVIFDHWIENVLRRHGEQRVA-ELRILKRSGAYLNAEVLAKNMLENNVINGVVVNI 572 Query: 559 HDISEWKQEKNKL 571 D++ K+ + +L Sbjct: 573 RDVTVRKKAEEEL 585 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 4/162 (2%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487 +E + +R+ L ++E+ + +I+ E I+ N+A + G Sbjct: 283 RTGELETQVRIREEQERESFERAQFLTDVIESLAHPFYVIDAETYEIILANKAAYRSIGS 342 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 L +L ++E I + E++ + + + Sbjct: 343 TGRTCYELT-HHANHPCDGLDHPCPLQTVLKTGAATSVEHIHFDQSGEKRYVEVHGYPVR 401 Query: 548 LPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + DI+E K + L + I E++ + +++ Sbjct: 402 NSEGKVIQMIEYSLDITEKKDAERTLINLNSILEQKVAERTE 443 >gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 832 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 105/673 (15%), Positives = 215/673 (31%), Gaps = 82/673 (12%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E V + + + + A + + L Sbjct: 21 ALWETAGDIVVVLAPDGRLSAISDRGLAFLGRTREEALGRDWFELAIPPEDHDRGRAALA 80 Query: 263 TSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314 LP + L + L + A Sbjct: 81 GIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLAPAAGGQAAVLGCGHDITDRLQSEAA 140 Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + + F+ G AN + L + +E L+ Sbjct: 141 LRESDAEYRSIFNAVSDAIFIQDAATGAFLEANDRAVDLFGHS----LEEFRRLAPPDLT 196 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 +A + + R +L ++ +A + Sbjct: 197 AGSPPYSADEILAKLRLAGEGRP---QLFDWLARDKSGRLFWTEVSLRAVTYKGRTRIIA 253 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGYPVED 491 + + + R+ +R + + + EA + + + + A +L+G Sbjct: 254 VVRDITERRMAERALRASEKKFRQLAEAIGEVFWLTATDWKRTFYISPAYERLWGRTTRS 313 Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + P + + + YLT + + + + + ++ + Sbjct: 314 LYEAPLSWLESVHPEDRDPVLSYLTSLAGRPVVPGVFPEYRLLRPDGTVRWVQARHFPVA 373 Query: 550 FSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS---------------------- 583 + + DI++ + +L + E Sbjct: 374 DDTGVVYRVAGIVEDITDRVLARKELEGINERLEDMVRDRTRTLNRMNEELIREVAERRE 433 Query: 584 -----------------HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 KS+FLA +SHEIRTP+ I+G ++++ G +P + Sbjct: 434 AEAAMAVAKEAAEAASQAKSEFLANMSHEIRTPMNGILGMAQIL----GGTSLDPAQQGF 489 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+ S +L ++ND+LD SKIE+ ++ L +P L ++ + + + A E + + Sbjct: 490 LKDIEDSATSLLTLINDILDFSKIEADRLELARDPFGLRGVLASVEAALGVLARENGLEL 549 Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN------- 734 A ++P +L D ++Q+ +N++ NAI FT GG +I + T Sbjct: 550 HVDVAPDVPDVLLGDADRLRQVLVNLVGNAIKFTRRGGVVIGVQCVETCLAQESAGPDAT 609 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +E++ V DTG+G+ + ++ + F Q S R GTGLGL + + +V G + Sbjct: 610 QELVFSVSDTGIGIRPEDADRIFEAFTQADGSYTRRFGGTGLGLAITRRLVGLMGGVIGL 669 Query: 795 FSTPAKGTLIEII 807 S P +G++ Sbjct: 670 ESEPGQGSVFTFT 682 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 41/422 (9%), Positives = 116/422 (27%), Gaps = 28/422 (6%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 N T ++ + L + V G L IS+ +G Sbjct: 2 QNATAPTDQTPTEAGTLCA--ALWETAGDIVVVLA----PDGRLSAISDRGLAFLGRTRE 55 Query: 112 KMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 + +G +++ H + ++ + +G++ W + I + + Sbjct: 56 EALGRDWFELAIPPEDHDRGRAALAGIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLA 115 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--------- 220 + G G H A + D ++ + ++ Sbjct: 116 PAAGGQAAVLGCG--HDITDRLQSEAALRESDAEYRSIFNAVSDAIFIQDAATGAFLEAN 173 Query: 221 --KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 D+F +++ + Y+ + + K + ++ + Sbjct: 174 DRAVDLFGHSLEEFRRLAPPDLTAGSPPYSADEILAKLRLAGEGRPQLFDWLARDKSGRL 233 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 + + + T + ++ E + + F++ + Sbjct: 234 FWTEVSLRAV--TYKGRTRIIAVVRDITERRMAERALRASEKKFRQLAEAIGEVFWLTAT 291 Query: 339 G--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 FY +P++ L + E L++ D + + + + R + Sbjct: 292 DWKRTFYISPAYERLWGRTTRSLYEAPLSW---LESVHPEDRDPVLSYLTSLAGRPVVPG 348 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + F A+ GI + D + ++++E +L Sbjct: 349 VFPEYRLLRPDGTVRWVQARHFPVADDTGVVYRVAGIVEDITDRVLARKELEGINERLED 408 Query: 457 IL 458 ++ Sbjct: 409 MV 410 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 5/140 (3%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYL 513 ++ E D + ++ +G + + + G E+ L + + + L Sbjct: 20 AALWETAGDIVVVLAPDGRLSAISDRGLAFLGRTREEALGRDWFELAIPPEDHDRGRAAL 79 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTM---HDISEWKQEKN 569 I++ L + L P + + + HDI++ Q + Sbjct: 80 AGIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLAPAAGGQAAVLGCGHDITDRLQSEA 139 Query: 570 KLSHAKKIAEKESSHKSDFL 589 L + + SD + Sbjct: 140 ALRESDAEYRSIFNAVSDAI 159 >gi|294495506|ref|YP_003541999.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292666505|gb|ADE36354.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 962 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 133/744 (17%), Positives = 281/744 (37%), Gaps = 49/744 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G + + + + +G +++G D + I + + + Sbjct: 247 LDPEGNVLFSNLKTSEILGYPEEEIVGKNWVDNFIPSRNKAHVRQIINEIVSGKEEIVQG 306 Query: 148 TLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 P+ +N I+ + + E +G GI + + KF + Sbjct: 307 YQNPVLNISNKEFVIEWHNSVLRNDKGEITGIIASGI--DVTERKLAQKEIR----KFKN 360 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLT 263 + + S + +I H +V H + L+ ++ Sbjct: 361 IVDRANYGSLLLDLDGNITYINDYFANIHGYTPEEVIGKDISIFHNKNQLEETYRFRNKL 420 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----HRNHPSLSAYFDEG 318 E+S +E +HT + + ++S Y++ + + E Sbjct: 421 IEDSDYKHREIWHTHKDGTEFPMLMEAVVHEDKQDSDRYIAATGIDITDMKNTENALRES 480 Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E ++K P FV G+ N T Y S +++ + L P + Sbjct: 481 EAKFRNYINKAPDGVFVADENGDYVEVNTEACETTGY-SKEELLSMNLID--LIPPDNHE 537 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 L + + ++ + + + G + Sbjct: 538 KVIEGFETLVKK----GYVDVEFNFLRKDGSRRWW------RVTSTKLSDTRYLGFTKDT 587 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 ++++ + + + L SI+E+ DG++I++ + I+ N A++K + + K Sbjct: 588 TESKLMEEALIKNKLFLNSIIESIKDGVSILDADMNIVRVNDAMNKWYEKNTP-LEGKKC 646 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CY 554 + + + + E + L K + Sbjct: 647 YEAYHDRDSPCTPCPVIRCMETGETER-NIVQGLPDPEPQWFELLAYPLKDSTTGEITGT 705 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI++ K+ + +L+ A+ + S S+ A + HE+RT L IIGF++++ N Sbjct: 706 VEFVKDITDHKRAEAELAEARLHGREVSKTNSELKANLGHELRTSLGNIIGFTQMLHNNI 765 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +G L NP+ ++ I +S ++++++D+L+IS +E+GKM L+ E S+ E ++E + Sbjct: 766 YGRL-NPKQQKHIQGIQKSAEHLMNLIDDILEISDVEAGKMELNIEMFSIIELLNEILIF 824 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ +A ++ + I T IP I D +KQ N++ NAIHFTP G + IS ++ + Sbjct: 825 LKPFAEDRNVEITTDIPEYIPEINVDKAKIKQAIYNLIINAIHFTPEGRNVHISMEYS-S 883 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPF---GQ---IPNSQQIRGEGTGLGLPLAKAMVDAN 788 ++ V D+G+G++ +LE+ +PF + LGL LAK ++ + Sbjct: 884 YDLKFEVNDSGIGISPTQLEELFRPFKEIYSESGVKPPDSN------LGLSLAKEYIELH 937 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812 G+ + S G P+ Sbjct: 938 GGEIEVESESGAGNSFVFTIPIQP 961 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 11/276 (3%) Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL-LLTKYKSVDDIEIAGGLSTLLD 371 DE + +D P P F +G N F + + Sbjct: 95 SLDERAKFLKKLIDTIPGPIFYKDINGVYKGFNKIFCKEILGIPCEKAVNHTLFELAEQI 154 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+L++ + L + R ++ + F ++ Sbjct: 155 PPELAEIYHEHDMELIKKQRKQ----VYETKVRCADGENKEFRFYKATYNDRDGNVAGII 210 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + D + ++++ E + L+A +++ EG +L +N S++ GYP E+ Sbjct: 211 GSMLDISDLKAKEKELREEKKKTGECLDAAEVIFVVLDPEGNVLFSNLKTSEILGYPEEE 270 Query: 492 ILRKPFTVFLEQNTPSVM-NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 I+ K + + + EI+S K + L Sbjct: 271 IVGKNWVDNFIPSRNKAHVRQIINEIVSGKEEIVQGYQNPVLNISNKEFVIEWHNSVLRN 330 Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + D++E K + ++ K I ++ + Sbjct: 331 DKGEITGIIASGIDVTERKLAQKEIRKFKNIVDRAN 366 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 16/247 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D +G E++ E +T G +++ M L D+ + + + L ++ Sbjct: 495 VFVADENGDYVEVNTEACETTGYSKEELLSMNLIDLIPPDNHEKVIEGFETLVKKGYVDV 554 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G+ + + + + S R G + + Sbjct: 555 EFNFLRKDGSRRWWRVT---------STKLSDTRYLGFTKDTTESKLMEEALIKNKLFLN 605 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-------EK 258 + E K S+ +I KN + Y D Sbjct: 606 SIIESIKDGVSILDADMNIVRVNDAMNKWYEKNTPLEGKKCYEAYHDRDSPCTPCPVIRC 665 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +E + + D T + +H A E Sbjct: 666 METGETERNIVQGLPDPEPQWFELLAYPLKDSTTGEITGTVEFVKDITDHKRAEAELAEA 725 Query: 319 ENLTPET 325 E Sbjct: 726 RLHGREV 732 >gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 576 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 121/527 (22%), Positives = 211/527 (40%), Gaps = 46/527 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ Sbjct: 345 MVGDMTDD-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A +RI ++ + + D R KQI N+L+NA+ F+ GG +I++ Sbjct: 404 IVREQAALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVP 463 Query: 734 NEE-----------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 RSQAGVLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 EGTGLGL + K + + + G + S GT + P+ + Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIRPPASEE 570 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDDQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L + + + L + + R L D G Sbjct: 374 ILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETDADFGLLELDR 431 Score = 45.0 bits (105), Expect = 0.057, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G + R Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167 Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244 + + L E + + I R ++++ Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + SE + + + T + ++ + Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329 + F+ ++ Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312 >gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1314 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 110/545 (20%), Positives = 205/545 (37%), Gaps = 29/545 (5%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFY 343 ++ L+ ++ +L+ + + +E T+D + Sbjct: 286 RRDEALLELLAQWVGTHLAQQQRMQALQWSNERLARFRATLDHLDDMIALADPRTLRFVD 345 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N + T + L P+ L + L Sbjct: 346 VNRGMVESTGLSLDGLLSKRL---ADLTTPQSQAKVNRIMNRLVVGLDRMLRFEVTLQ-- 400 Query: 404 QWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 N E P + + + + + + + + +L LE ++ Sbjct: 401 HTNGSCIETDALVQWVELEAGKPVVVH---MLRDATERKRAETALRVSEERLTFALEGSN 457 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLD 520 DG+ N L + + + G+ + + + + L I Sbjct: 458 DGLWDWNIAEDNLHCSPRLEAMLGFRRGSLTGSMARLKSMIVEQERPGVEALL-RIHLDG 516 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAK 575 E ++ +LL + K + +S T DI+ K + L AK Sbjct: 517 HVDLYEAEYRINSASGRLLWILDRGKVVQRNSKGQPIRAVGTFTDITARKDMEAALHDAK 576 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE S KS FLA +SHEIRTP+ AI+G S + Q R ++ I+ SG+ Sbjct: 577 VEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQA----KEARQRDFLEKINHSGH 632 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 ++ ++ND+LD+SKIE+ +M+L +P LDE + + + V K + + A+ P Sbjct: 633 FLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVLPAMRNKAVEVHFFIASGTP 692 Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGG-QIIIS----TTHTSNEEVILRVRDTGVGMT 749 ++ D + Q+ N+LSNA+ FT G +I ++ T + V+D+G+G+ Sbjct: 693 LALVGDALRLGQVLHNLLSNAMKFTHEGEVRITLTAEPYVQLTDHYLFTFEVKDSGIGIP 752 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K + F Q +S + G+GLGL + + +++ GK + S+ +G+ P Sbjct: 753 AEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHGKITLQSSLGQGSTFTCRLP 812 Query: 810 LYDTS 814 L S Sbjct: 813 LQIQS 817 Score = 41.2 bits (95), Expect = 0.76, Method: Composition-based stats. Identities = 26/303 (8%), Positives = 73/303 (24%), Gaps = 29/303 (9%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWP 151 +++ + ++ G ++ RL D++ N I + L + TL Sbjct: 342 RFVDVNRGMVESTGLSLDGLLSKRLADLTTPQSQAKVNRIMNRLVVGLDRMLRFEVTLQH 401 Query: 152 IEGT-----NLYVPIDL-AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 G+ L ++L A P+ ++ + +++ + Sbjct: 402 TNGSCIETDALVQWVELEAGKPV-----------VVHMLRDATERKRAETALRVSEERLT 450 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E D P + + SLT A ++ ++ P + + Sbjct: 451 FALEGSNDGLWDWNIAEDNLHCS-PRLEAMLGFRRGSLTGSMARLKSMIVEQERPGVEAL 509 Query: 266 ES--------SLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFD 316 + ++ + +Q NS + + + + Sbjct: 510 LRIHLDGHVDLYEAEYRINSASGRLLWILDRGKVVQRNSKGQPIRAVGTFTDITARKDME 569 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + + + S+ + Sbjct: 570 AALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQAKEARQRDFLEKINH 629 Query: 377 DNN 379 + Sbjct: 630 SGH 632 >gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida LFI1238] Length = 943 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 99/379 (26%), Positives = 178/379 (46%), Gaps = 15/379 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + E E +L + E D I I + G++ N++ S L G+ + ++L K Sbjct: 264 KRELVNSEKEKSKLALVAEHAHDAILITDNNGMLTWANQSFSTLSGFQLNEVLGKKPGDL 323 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ S + ++ +E + K+ + + I S + Sbjct: 324 LQGENTSK-DDIARISAAIKKGAAIESELINYHKDGSEYWIGMSITPTFNSDGSVEQFIA 382 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K + L +A + AE + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 383 VERDITKRKALEIDLFNAAEQAEVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + +P + N + SG+ +L ++ND+LD SKIE K+ L P + +S + Sbjct: 440 -IKDPEQHKQINVLLESGDHLLSLLNDILDFSKIEQNKLELDNLPFDFKDVISPIANTYI 498 Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732 +K + + N + D ++QI N++SNA+ FT G I ++ +HT Sbjct: 499 PICEDKGLELIIHDQINAGAVFNGDKPRIRQIIFNLISNAVKFTHKGS-ITLTFSHTLTA 557 Query: 733 -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 S + +++++ D+G+G+ L+ PF Q ++ + GTGLGL + K +VDA G Sbjct: 558 KSKQGLLIKIEDSGIGIREERLDYIFDPFIQAESATTRQYGGTGLGLAIVKQLVDAMQGY 617 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S +GT I+ PL Sbjct: 618 ISVKSVEGEGTGFTIMLPL 636 >gi|323138439|ref|ZP_08073508.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] gi|322396235|gb|EFX98767.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis sp. ATCC 49242] Length = 742 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 123/742 (16%), Positives = 238/742 (32%), Gaps = 41/742 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D +S M+G+ ++ + L + + Sbjct: 21 DREMRYLAMSPRW--LSEYPVDGPMLGLSHYELFPEIPERWKEAHRRGLAGETLSAAEDC 78 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G V + P + + G F + +++ + Sbjct: 79 FVRADGG--VVWMSWQLRPWFEADGTIGGIVIFA--EDVTPRKRAEEALRLSEERHRYAM 134 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + K + V E D + Sbjct: 135 QATREGLWDWNIKTGEAFISPYYCAMLGYEESDFAPDVVRHWIELLHPDDRDATLARVDE 194 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-----SKESFEYLSHRNHPSLSAYFD 316 SE + + T + ++ + S+ ++ A Sbjct: 195 WLSESGAYSCEFRLRTKDGKYRWILSRGKVVERDEAGAPSRAVGAHVDITERKQAEAALI 254 Query: 317 EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E E+ + D P ++ Y N ++L T + G + + Sbjct: 255 ESEHRFQQIADHTPALIWMSGAEKGCTYFNRTWLNFTGRALEQQL-GDGWTACVHPNDLD 313 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 R + ++ + + + + E + G Sbjct: 314 RCLETYGSAFDARK-----PFEME-YRLRRHDGEYRWVLDVGVPRFTPEGEFLGYIGSGV 367 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILR 494 + + R + + +L + GI + N L+G P + Sbjct: 368 DVTERRNAEEALRKREERLSLAQSSAHIGIWDWDLGANETFLNNEYYDLYGLPRGASLTY 427 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSC 553 F + ++ + LS R + +I E + ++ + I+ Sbjct: 428 DDFLSRVHPEDRQRVDSEMQTALSGGGRLDFQCRIVRADDCETRWIASKGIVFFNADGHP 487 Query: 554 YSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI- 610 + ++DI+E K+ + +L K +FLA ++HE+R PL AI ++ Sbjct: 488 FRAMGAVYDITELKKIEEELLSV-------DRRKDEFLATLAHELRNPLGAISNSVNLLN 540 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + I R N + IV+DLL+I++I+ GK+ L E V L E +S+ Sbjct: 541 ILTSETSSAEEKKRASLARIKRQVNHLKRIVDDLLEITRIKHGKIELKKERVELGEILSQ 600 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A+ L Q EK + + + D + QI N+L+NA+ FT +GG+I I+ Sbjct: 601 AVDLCQPLVQEKGHQLTIELPSRPLEVDGDPVRLVQIFGNLLNNAVKFTDAGGRIDIAAA 660 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 H +E I+RVRDTG G+ L F Q+ +I G G+GL L++ ++ + G Sbjct: 661 H-GEKEAIVRVRDTGAGLPPETLGSIFDMFAQVKTGSRIASGGIGVGLALSRGLILLHGG 719 Query: 791 KFYIFS-TPAKGTLIEIIFPLY 811 + S P G+ + PL Sbjct: 720 RIDAHSDGPGHGSEFVVRLPLA 741 Score = 67.7 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 35/290 (12%), Positives = 71/290 (24%), Gaps = 10/290 (3%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 ++ S D + + ++SE+ F W A + Sbjct: 227 RDEAGAPSRAVGAHVDITERKQAEAALIESEHRFQQIADHTPA-LIWMSGAEKGCTYFNR 285 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159 G + +G +D G + + + L +G Y Sbjct: 286 TWLNFTGRALEQQLGDGWTACVHPNDLDRCLETYGSAFDARKPFEMEYRLRRHDGE--YR 343 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 + +P ++ EF G+ G G+ V N AL KR ++ G + Sbjct: 344 WVLDVGVPRFTPEGEFLGYIGSGV-DVTERRNAEEALRKREERLSLAQSSAHIGIWDWDL 402 Query: 220 EKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + F + S L+ + + +E L+ + Sbjct: 403 GANETFLNNEYYDLYGLPRGASLTYDDFLSRVHPEDRQRVDSEMQTALSGGGRLDFQCRI 462 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + N F + + +E Sbjct: 463 VRADDCETRWIASKGIVFFNADGHPFRAMGAVYDITELKKIEEELLSVDR 512 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 41/140 (29%), Gaps = 8/140 (5%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 L +E T A+ +RE L+ + + + + L P Sbjct: 4 ADLRLFIEQTPIAAAMFDREMRYLAMSPRWLSEYPVDGPMLGLSHYE--LFPEIPERWKE 61 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567 L+ + E + + ++ + ++ + + D++ K+ Sbjct: 62 AHRRGLAGETLSAAEDCFV--RADGGVVWMSWQLRPWFEADGTIGGIVIFAEDVTPRKRA 119 Query: 568 KNKLSHAKKIAEKESSHKSD 587 + L +++ + Sbjct: 120 EEALRLSEERHRYAMQATRE 139 >gi|239787450|emb|CAX83922.1| Sensor protein [uncultured bacterium] Length = 1574 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 103/636 (16%), Positives = 229/636 (36%), Gaps = 31/636 (4%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD----IFSQQSPPPHLRMKNK 239 + + +++F L + ++ + +D I + + + Sbjct: 439 IRDRVSKGAMEEAMRVSERRFRALFDTMSSGVAIYEPFHDGEDFIIKEFNRAGRRISASG 498 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 L + + + + +H ++ Q + + + ++ Sbjct: 499 ARDLIGLKITEAFPGIRDFGLFEVFQRVHRTGESAYHPVSWYQDERHRGWLDNHVYRLDT 558 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVD 358 E ++ + + +E L +++ + G + + NPS Y S++ Sbjct: 559 GEIVAIYDDLTEKRLAEEQLRLAQASIENSTDWVVWSKPDGGILWMNPSGREHLGY-SLE 617 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 D+ P + +++R+ L + Sbjct: 618 DLRGMTISD---LNPGHPREMWAEHWAALKANRSL------LFEAGVMGRDGALQPVEVS 668 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 +F I + + + + + +I+ A+ D +A I+ I + N Sbjct: 669 ANYLEFENREYNVAIVRHIGERKQAEESLR----RYAAIVSASRDHMAFIDTGYIYRAVN 724 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + G P+E + + + + L R + ++ Sbjct: 725 QTYLDCHGLPIEAFVGHSVAALFGEEFFGRIKALMDHCLK-GERINYQGWIDFPVAGKRW 783 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + D +E K +++L +++ A + + K +FLA +SHEI Sbjct: 784 MDVSYFPHHREDGEVTGLVVVSRDATERKFMEDELRASEEQARQANRAKGEFLANMSHEI 843 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ AI+G + + + Y I + + +L ++ND+LD S+I++GK+ Sbjct: 844 RTPMNAIVGMAYLAMQTGLTS----QQRGYLEKIQGASHALLRLINDILDFSRIDAGKLE 899 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 + P LD+ + + K + + ++PR + D + Q+ N+ N Sbjct: 900 MENLPFELDQVLGGVFDGLLPKLARKGGVELLLDCPGDLPRRLRGDGVRLGQVLTNLCDN 959 Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 AI FT +G + I E++ V D+G+G+ ++E+ ++PF Q +S R Sbjct: 960 AIKFTEAGEVAVSIRLEAMDEEQLTYAFVVTDSGIGIDPEQIERILQPFQQADSSTTRRY 1019 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTGLGL + + +V G F + S P +G+ Sbjct: 1020 GGTGLGLAICRNLVTMMGGVFQVDSAPGRGSRFAFT 1055 Score = 131 bits (329), Expect = 6e-28, Method: Composition-based stats. Identities = 57/573 (9%), Positives = 145/573 (25%), Gaps = 94/573 (16%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 + G ++ ++ + G A ++IG + SD + +L + W G+ Sbjct: 164 TNPGGVIEYVNSSFERLTGYSAQEIIGANPRLLKSDQQDPSVRRDMWHVLVAEGRWRGEL 223 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ + + + A + + + + + L + ++ Sbjct: 224 LNRKKDGSQFWASVSIGA--VRDGSGAVRAY--IAVEEDVTLMRQAERLLIQANRALRTR 279 Query: 208 HEIKKGHSSVEKEKYDIF------------------SQQSPPPHLRMKNKVSSLTEYYAH 249 + ++ E ++ + P P R+ + + Sbjct: 280 YRFAGILAAAEDDEKKVLTDLCEVVVTETGYRMAWVGFADPGPERRVIPVAKAGHDEGYL 339 Query: 250 KDDVLKTEKY-------------------------PLLTSEESSLPEQEDFHTINLNQYT 284 + P + ++ I L Sbjct: 340 DGISISWSDASGGHGPVGRAIRSGLPCVVHDIAGDPDFAPWRDAALKRNYASCIALPVKV 399 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----------------------ENLT 322 + G L S E ++ +H G E Sbjct: 400 ARATVGALAIYSVERRDFDAHEVELLNELAIQMGHAIQQIRDRVSKGAMEEAMRVSERRF 459 Query: 323 PETVDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 D +Y + + N + ++ + D + P + Sbjct: 460 RALFDTMSSGVAIYEPFHDGEDFIIKEFNRAGRRISASGARD-LIGLKITEAF---PGIR 515 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D + + H + W ++ E I + Sbjct: 516 DFGLFEVFQRVHRTG-----ESAYHPVSWYQDERHRGWLDNHVYRLDTGE---IVAIYDD 567 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R+ + ++ + + +E ++D + +G IL N + + GY +ED+ Sbjct: 568 LTEKRLAEEQLRLA----QASIENSTDWVVWSKPDGGILWMNPSGREHLGYSLEDLRGMT 623 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + + + + + E +G + + + + Sbjct: 624 ISDLNPGHPREMWAEHWAALKANR-SLLFEAGVMGRDGALQPVEVSANYLEFENREYNVA 682 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + I E KQ + L S F+ Sbjct: 683 IVRHIGERKQAEESLRRY-AAIVSASRDHMAFI 714 Score = 83.9 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%) Query: 441 RINKRKMEIEV---MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 R ++ + +L LE + + I N G+I N + +L GY ++I+ Sbjct: 134 RRTHADLQSQSFKLHKLSVALEHSPGAVVITNPGGVIEYVNSSFERLTGYSAQEIIGANP 193 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 + + + +L + R L K+ + I + S Sbjct: 194 RLLKSDQQDPSVRRDMWHVLVAEGRWRG--ELLNRKKDGSQFWASVSIGAVRDGSGAVRA 251 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 Y D++ +Q + L A + + F ++ Sbjct: 252 YIAVEEDVTLMRQAERLLI----QANRALRTRYRFAGILA 287 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 26/363 (7%), Positives = 83/363 (22%), Gaps = 20/363 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 +KE + + + A +IG+++ + + + + R W + Sbjct: 484 IKEFNRAGRRISASGARDLIGLKITEAFPGIRDFGLFEVFQRVHRTGESAYHPVSWYQDE 543 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + +D E I + + Sbjct: 544 RH-RGWLDNHV--YRLDTGEI-----VAIYDDLTEKRLAEEQLRLAQA---SIENSTDWV 592 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + + ++ S HL + + + +++ + Sbjct: 593 VWSKPDGGILWMNPSGREHLGYSLEDLRGMTISDLNPGHPREMWAEHWAALKANRSLLFE 652 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + + + ++ H +E V Sbjct: 653 AGVMGRDGALQPVEVSANYLEFENREYNVAIVRHIGERKQAEESLRRYAAIVSASRDHMA 712 Query: 335 VYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G + N ++L + ++ L A+ L Sbjct: 713 FIDTGYIYRAVNQTYLDCHGLPIEAFVGH--SVAALFGEEFFGRIKALMDHCLK---GER 767 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 I + + + +++ P + + E + + + + + ++ Q Sbjct: 768 INYQGWI-DFPVAGKRWMDVSYFPHHRED--GEVTGLVVVSRDATERKFMEDELRASEEQ 824 Query: 454 LCS 456 Sbjct: 825 ARQ 827 >gi|56419479|ref|YP_146797.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|261419163|ref|YP_003252845.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|297530867|ref|YP_003672142.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|319765980|ref|YP_004131481.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|56379321|dbj|BAD75229.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|261375620|gb|ACX78363.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|297254119|gb|ADI27565.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|317110846|gb|ADU93338.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 738 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 111/723 (15%), Positives = 239/723 (33%), Gaps = 50/723 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 +G +++E K F +IG +++ D +L++ ++ + + Sbjct: 51 NGEFVDVNEAACKLFEMDKFSLIGHSFSSFLELVPPDILLFQRSMLQKFGSFSDELLIKL 110 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G +V + EF ++ + F + Sbjct: 111 PDGKVKHVEFSMK----KDVFDEFD----LVMMRDISAHKALERERIIHEFLFRDVFNRA 162 Query: 212 KGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + E K K+ +L+ + L +E Sbjct: 163 VDGIVIFDEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECANEFARLLAEVKEKGT 222 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDK 328 + E + T S ++ + E ++ Sbjct: 223 AKGELSLVRPDGTVKMFELTATSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ 282 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 ++ G + ANP+ + L D D + + Sbjct: 283 AHEAILIWDDFGYILNANPAASRTF-----ELPLNLLVRRNLFDFVDYGDEKVKRIFSEF 337 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 R T + F + + I + R +R++ Sbjct: 338 RRKGEIRDEL----TFHMPNGEDKQLEFT----MKKGAIDGYHLTIFRNVSERRKIEREL 389 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + SI + DGI + + + I+ N V +F E +L + + + Sbjct: 390 RESEQKFRSIFDHAMDGILLWDAKHRIIDANPVVCGIFSVEKEALLGRMVVELVPERARR 449 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 +N L + ++ + +++ + + +P + + D++E K+ Sbjct: 450 QLNKLLQQCQRTGEAS--GEVEFFDEGKGRIIEFSLKKEVIPGVG--MMMLRDVTERKEM 505 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L + + + A ++HEIR P+TA+ GF ++++ G Y Y Sbjct: 506 ELQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSIDG-----DYSMYF 555 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I + I+ + L ++K ++ + + + + + + I L+ A + I Sbjct: 556 NVIMSELKRIESIITEFLVLAKPQAVQYKQN----DICKIMQDTIDLISAQAMMHNVQII 611 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 F +P + + +KQ+ +NIL NAI P GG I + T + V + + D G G Sbjct: 612 ADFERGLPPVYCEPNQLKQVFINILKNAIEVMPKGGDITVRIT-RAGCYVRISITDQGCG 670 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +++K +PF + GTGLGL ++ +++ + GK + S GT I Sbjct: 671 IPKDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHQGKIEVESEVGVGTTFHIT 724 Query: 808 FPL 810 P+ Sbjct: 725 LPI 727 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 3/149 (2%) Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + P+ R+++ + I E + D I I+N+ G + N A KLF Sbjct: 7 PREEQNASPDVRSLEEENRRLKERLNSYSIIFERSLDAIVILNKNGEFVDVNEAACKLFE 66 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 ++ F+ FLE P ++ + + + L + K+ + +K Sbjct: 67 MDKFSLIGHSFSSFLELVPPDILLFQRSMLQKFG---SFSDELLIKLPDGKVKHVEFSMK 123 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 K F + M DIS K + + + Sbjct: 124 KDVFDEFDLVMMRDISAHKALERERIIHE 152 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 30/368 (8%), Positives = 97/368 (26%), Gaps = 32/368 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G +++ ++ K++ + + + +K + T G+ +L Sbjct: 170 DEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECANEFARLLAEVKEKGTAKGELSL 229 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT + + + + GF I+ + ++ +++F + Sbjct: 230 VRPDGTVKMFELTATS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279 Query: 208 HEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263 E + + Y + + + + + L ++ + D+ +K Sbjct: 280 FEQAHEAILIWDDFGYILNANPAASRTFELPLNLLVRRNLFDFVDYGDEKVKRIFSEFRR 339 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + ++ FH N + + + + + E E Sbjct: 340 KGE--IRDELTFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELRESEQKFR 397 Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D ++ + ANP + + + + Sbjct: 398 SIFDHAMDGILLWDAKHRIIDANPVVCGIFSVEKEALLGRMVV---------ELVPERAR 448 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + A ++ + F + + + + + Sbjct: 449 RQLNKLLQQCQRTGEASGEVEFFDEGKGRIIEFSL----KKEVIPGVGMMMLRDVTERKE 504 Query: 443 NKRKMEIE 450 + ++ Sbjct: 505 MELQLRKS 512 >gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 959 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 116/637 (18%), Positives = 233/637 (36%), Gaps = 36/637 (5%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSS--LTE 245 +++ L + ++ + +++ + + Sbjct: 192 RERTGRQLIESMERYRLLVDTANEGIWAMDREHVTTYVNAAMADMIGYSPDEMIGQKVED 251 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 Y+ +D L +++ E + E+ F + + L+ + E + Sbjct: 252 YFFPEDMELHSQRMARRHGGEDDVYER-RFRRRDGKELWTMVSAKALKGDRNEFNGSFAM 310 Query: 306 RNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 +L + E L ++ P ++ G N F I Sbjct: 311 FTDITLRKEAQNALAQSELLLRTIINTIPDLVWLKDIDGRYLQCNKKFERFFGADESAII 370 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 +L+D + I + S I Sbjct: 371 GKD---DYAFFNKELADFFRDNDRKAIEAGGPRINEEWLTFV---EDDYSGLFETIKSPM 424 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + GI E ++ + + + ++ A+ GIAI ++ G+IL N Sbjct: 425 YDAHGRLIGVLGIAREITARKMAEEALRESEERFKALHNASFGGIAIHDK-GVILECNLG 483 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +S++FGY ++++ + + + V+ ++ G K + Sbjct: 484 LSEMFGYARDELIGMDGLFLVAERSRDVVMAHIRAGYEKP------YEEYGRRKNGEEFP 537 Query: 541 LRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 +R+ + LP+ + DI++ + L AK+ AE + KS+FLA +SHE+RT Sbjct: 538 MRLEARNLPYKGKMVRAVEFRDITDSVKAAQALLDAKEAAESATRAKSEFLANMSHEVRT 597 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL ++G ++++ EY +S + ++ D+LDISKIE+GK+ + Sbjct: 598 PLNGVLGMLQLLQTTE----QTDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQII 653 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717 + + + A EK + +P +L D V+QI N++ NA+ Sbjct: 654 EAEFFTACLQESIMEIFRPTAREKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALK 713 Query: 718 FTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT SG + + + V+ V DTG+G+++ +L+ +PF Q S + Sbjct: 714 FTESGS-VQVDAMVLPAKNSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQ 772 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G GLGL + + +V G+ I +T GT + + P Sbjct: 773 GAGLGLAIVRKLVRILGGEMVIDNTAGNGTTVYVSLP 809 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 33/386 (8%), Positives = 96/386 (24%), Gaps = 27/386 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W +D ++ + IG +MIG ++ D ++ ++ Sbjct: 217 IWAMDREHVTTYVNAAMADMIGYSPDEMIGQKVEDYFFPEDMELHSQRMARRHGGEDDVY 276 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G + ++A + EF+G F + + + + + + Sbjct: 277 ERRFRRRDG--KELWTMVSAKALKGDRNEFNG--SFAMFTDITLRKEAQNALAQSELLLR 332 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + ++ + + +K+ Sbjct: 333 TIINTIPDLVWLKDIDGRYLQCNKKFERFFGADESAIIGKDDYAFFNKELADFFRDNDRK 392 Query: 263 TSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E E++ T + Y+ + + + L + +E Sbjct: 393 AIEAGGPRINEEWLTFVEDDYSGLFETIKSPMYDAHGRLIGVLGIAREITARKMAEEALR 452 Query: 321 LTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + E ++ G + N + Y + I G+ L + S Sbjct: 453 ESEERFKALHNASFGGIAIHDKGVILECNLGLSEMFGYARDELI----GMDGLFLVAERS 508 Query: 377 DNNAIKPVML----------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + R + + + + A+ F + + + Sbjct: 509 RDVVMAHIRAGYEKPYEEYGRRKNGEEFPMRLEARNLPYKGKMVRAVEFRDITDSVKAAQ 568 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVM 452 + E ++ + Sbjct: 569 ALLDAKEAAESATRAKSEFLANMSHE 594 >gi|254412795|ref|ZP_05026568.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180530|gb|EDX75521.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 797 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 116/775 (14%), Positives = 260/775 (33%), Gaps = 68/775 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147 +DA G + + + G ++ G D+ + I D L N Sbjct: 37 LDAQGRIVYFNHACEQLTGYLRQEVQGKYAWDLLILPEDVASIQAIFDNLIPDNFPQPCE 96 Query: 148 TLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + W + +D L + G L Sbjct: 97 SCWVTRDGDWRWIAWMDTVCL---NEQGTVEYVIATG--QDITERKQAEKALLELATLNQ 151 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + I + + V T H + + + L Sbjct: 152 AILDSANYTIISTTVDGTISTFNRAAEKWLGYSASDVVGKTTPALFHDPEEIVERSHELC 211 Query: 263 TSEESSLPEQEDFHTI-----------------NLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + + + +++ L N+ + +L Sbjct: 212 QELNTPIQPGFEAFVAKARRGEIDEREWTYIRHDGSRFPVLLSITALYNSDNQIVGFLGI 271 Query: 306 RNHPSLSAYFDEGENLTP----ETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD 359 + + ++ + D P ++Y YAN S + L Y D Sbjct: 272 GSDIIIRKQAEQSLRDSQHFSQRIADTVPGILYLYDVIEQRNVYANRSTVELLGYTPQDI 331 Query: 360 ----------IEIAGGLSTLLDAPKL-----SDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + + +L+ K D++ + ++ +R Sbjct: 332 QDIGTDFMSHLVHPEDIPHILEHQKHLTTLTEDDHLTLEYRMKHANGEWRWLRSRETVFS 391 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--QLCSILEATS 462 + E + ED++ R+ +R ++E QL +E + Sbjct: 392 RTVAGLPKLLLGIAEDITDYKRVEDVLRQTNEDLEQRVEQRTADLENAHKQLRFHVENSP 451 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLD 520 G+ + + + ++ ++ G+ E++L K F F+ + ++ +L+ + Sbjct: 452 LGVIEWDSQFRVQGWSKQAERILGWKAEEVLGKQFNDWQFVYPDDFEFVHQKALNLLNPE 511 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576 + TK+ +L + L S + + D +E K ++ +L + Sbjct: 512 SPPEI-IENRNLTKDGNVLYCQWYNSVLFDESNAVVSILSLVQDQTERKHDEEQLQQLNQ 570 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 ++ + F SH++R PL I +S+++ + G L + R +Y YI S Sbjct: 571 QLQRSNQELEQFAYVASHDLREPLRKIRSYSDLLVKRYQGQL-DERADKYIGYITDSVIR 629 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 + ++ DLL S++ ++ L EP L E + + ++ + E + +I T+ ++P Sbjct: 630 MQALITDLLTYSRVSRNELVL--EPTDLGEILQQTLTDLSPAIEENQAIINTT---HLPI 684 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 + A+ + Q+ N+++NAI F QI I + + ++D G+G+ ++ Sbjct: 685 VQANSLQIGQVLQNLIANAIKFRREQPPQIDIKADCQDD-FWQISIQDNGIGIDPSYSDR 743 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F ++ + GTG+GL + + +V+ + GK ++ S +G+ P+ Sbjct: 744 IFAIFQRLH--YREEYPGTGIGLAICQKIVERHGGKIWVESELGQGSTFYFTLPV 796 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 82/295 (27%), Gaps = 25/295 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 E LT +D + G + Y N + LT Y + ++ Sbjct: 6 PTPESLPLNALKEQRELTAAMLDLIGALIVILDAQGRIVYFNHACEQLTGYLRQE-VQGK 64 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L+ ++ A + + + + + ++ N+ Sbjct: 65 YAWDLLIL----PEDVASIQAIFDNLIPDNFPQPCESCWVTRDGD-WRWIAWMDTVCLNE 119 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + ++ + +IL++ + I +G I + NRA K Sbjct: 120 QGTVEYVIATGQDITERKQAEKALLELATLNQAILDSANYTIISTTVDGTISTFNRAAEK 179 Query: 484 LFGYPVEDILRKPFTVFLEQNTP--------------SVMNHYLTEILSLDLRQTLEKIT 529 GY D++ K + + + + E+ Sbjct: 180 WLGYSASDVVGKTTPALFHDPEEIVERSHELCQELNTPIQPGFEAFVAKARRGEIDEREW 239 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + + I L S + DI KQ + L ++ +++ Sbjct: 240 TYIRHDGSRFPVLLSITALYNSDNQIVGFLGIGSDIIIRKQAEQSLRDSQHFSQR 294 >gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1062 Score = 353 bits (907), Expect = 5e-95, Method: Composition-based stats. Identities = 128/778 (16%), Positives = 263/778 (33%), Gaps = 73/778 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---KTTL 149 G L E +E + G ++IG V H N + + KR+ T + L Sbjct: 150 GILVECNEAAERFFGRSREQLIGRP-QSVLHPPHTRLVNGVTEDFKRKATDPRGLEEIKL 208 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + I G+ + ++++ + + Sbjct: 209 LASDGEVRDAEVTARVFDIGENK------LILGVFRDITERKRAEDALRESEQRYRRIVD 262 Query: 210 IKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + E I ++++ + L+ + + Sbjct: 263 TAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRG 322 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---------------HRNHPSL 311 S ++ + +L + + L+ H+ L Sbjct: 323 SDACYEKRLRRSDGTAVWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALHQEDARL 382 Query: 312 SAYFDEGENLTPETVDKCPIP--------------FFVYSHGNLFYANPSFLLLTKYK-- 355 + + T T + Y + + S+ Sbjct: 383 RKLLEIIQYDTANTQSLLDFALGKCLELTGSRFGYIYHYDEDSQSFTLNSWSRDVMQACS 442 Query: 356 --------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + G A ++D P+ + + I + Sbjct: 443 IANPQSCYELSKTGLWGEAVRQCRAVIVNDFLTDNPLKKGYPEGHAQLTNFLTVPI-LSN 501 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSD 463 + +A+ + ++ + ++ Q + + + R + + +L L A +D Sbjct: 502 KRIVAVVGVANKQTDYMDSDVIQLSLLMDATWRVVERRQAEESLRKSDERLSLALMAAND 561 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDL 521 G+ + + + GY + + L + H ++E L+ Sbjct: 562 GMWDWDISSGTTYFSPRYYTMLGYQPGEFPSDFDTWKSLLHPDDVEHAIHIVSESLNNSE 621 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIA 578 ++ + + + R + + T DI+E K+ + L AK A Sbjct: 622 GFEIDFRMRTKSGDWSWILGRGRVVETDAEGHAKRMVGTHVDINERKRSQADLLSAKLQA 681 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + KS+FLA +SHEIRTPL I+G ++++ N EY RS + Sbjct: 682 EAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE----PNEEQNEYLTGATRSTKRLT 737 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +++D+LDIS+IE+G+M++ + + + A K +++ + + +P +L Sbjct: 738 RLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFYTEAQGKGLVLDFIWDDELPTVL 797 Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYE 752 D ++QI N++ NAI FT G ++++ + N V+ V DTG+G+ Sbjct: 798 IGDEARLRQILFNLVGNAIKFTDKG-EVLVEVSLLPNSNFSSVRVLFTVSDTGIGICEEH 856 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L+ +PF Q S R +G GLGL + + +V G I S +GT + + PL Sbjct: 857 LKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGDISIDSALGEGTTVYLSLPL 914 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 86/324 (26%), Gaps = 17/324 (5%) Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 ++ L Q+ N Q Q E + + + +E Sbjct: 75 DAQLSAQDRQLLGNSVQMLALLLERLAQREELEGRKAQLEDEVKTRTRELNETLERYQAL 134 Query: 326 VDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 P V G L N + I S L N + Sbjct: 135 FASVSDPILVADRNTGILVECNEAAERFFGRSREQLIGRPQ--SVLHPPHTRLVNGVTED 192 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +D + + + + E + EN G+ + + + Sbjct: 193 FKRKATDPRGLE---EIKLLASDGEVR---DAEVTARVFDIGENKLILGVFRDITERKRA 246 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + + I++ +GI I + G I+ N+ +S L GY + +L + FL Sbjct: 247 EDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFP 306 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMH 559 + + + + + + +K LP + Sbjct: 307 ED---LEDHRQRMEDRRRGSDACYEKRLRRSDGTAVWTLVSVKSLPDATGRYDGSLAMFS 363 Query: 560 DISEWKQEKNKLSHAKKIAEKESS 583 DI++ K + L K Sbjct: 364 DITDRKLAEEALHQEDARLRKLLE 387 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 93/292 (31%), Gaps = 36/292 (12%) Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++L + L + + M A + Sbjct: 35 EAMWSELILKWIEGPEHPGEPCLPVRTMSGYYGRFITMGSDAQLSAQDRQLLGNSVQMLA 94 Query: 436 EDVDTRINKRKMEIEVMQL------------------CSILEATSDGIAIINRE-GIILS 476 ++ + ++E QL ++ + SD I + +R GI++ Sbjct: 95 LLLERLAQREELEGRKAQLEDEVKTRTRELNETLERYQALFASVSDPILVADRNTGILVE 154 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYLTEILSLDLRQTLEKITLGSTK 534 N A + FG E ++ +P +V +T + + + D R E L S Sbjct: 155 CNEAAERFFGRSREQLIGRPQSVLHPPHTRLVNGVTEDFKR-KATDPRGLEEIKLLASDG 213 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 E + + + + + DI+E K+ ++ L +++ + + + R+S Sbjct: 214 EVRDAEVTARVFDIGENKLILGVFRDITERKRAEDALRESEQRYRRIVDTAQEGI-RISD 272 Query: 595 E------IRTPLTAIIGFS-EVIK----NQRFGPLGNPRYIEYANYIDRSGN 635 E + ++ ++G+S + + P + + R + Sbjct: 273 ECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRGSD 324 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 57/528 (10%), Positives = 137/528 (25%), Gaps = 83/528 (15%) Query: 2 STDSIISNPEDIL----TSNCKGNTQDLSKKKID-NGFETEKSKKENPCHDSFEQSNFTD 56 S + +I P+ +L T G T+D +K D G E K + + + Sbjct: 166 SREQLIGRPQSVLHPPHTRLVNGVTEDFKRKATDPRGLEEIKLLASD--GEVRDAEVTAR 223 Query: 57 QNQ--------ESVSNTNYLDSENTFVFDPIPRTVRFT------WNIDAH-GYLKEISEE 101 + + + R R I G + +++ Sbjct: 224 VFDIGENKLILGVFRDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQR 283 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 + +G +M+G + D ++ + + +R + + L +GT ++ + Sbjct: 284 MSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRGSDACYEKRLRRSDGTAVWTLV 343 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI----------- 210 + +LP + G + + D + L EI Sbjct: 344 SVKSLP--DATGRYDG--SLAMFSDITDRKLAEEALHQEDARLRKLLEIIQYDTANTQSL 399 Query: 211 --------------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + G+ E F+ S + +++ Y L Sbjct: 400 LDFALGKCLELTGSRFGYIYHYDEDSQSFTLNSWSRDVMQACSIANPQSCYELSKTGLWG 459 Query: 257 EKYPLL------------------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 E + L ++ + Q + + Sbjct: 460 EAVRQCRAVIVNDFLTDNPLKKGYPEGHAQLTNFLTVPILSNKRIVAVVGVANKQTDYMD 519 Query: 299 SFEYLSHRNHPSLSAYFDEGENL--TPETVDKCPIPFFVYSHGN--------LFYANPSF 348 S + + + ++ ++ + + G Y +P + Sbjct: 520 SDVIQLSLLMDATWRVVERRQAEESLRKSDERLSLALMAANDGMWDWDISSGTTYFSPRY 579 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + Y+ + +LL + I L S+ I R + W Sbjct: 580 YTMLGYQPGEFPSDFDTWKSLLHPDDVEHAIHIVSESLNNSEGFEIDFRMRTKSGDW--- 636 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S + + + G + + + ++ + +Q + Sbjct: 637 -SWILGRGRVVETDAEGHAKRMVGTHVDINERKRSQADLLSAKLQAEA 683 >gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 954 Score = 353 bits (907), Expect = 6e-95, Method: Composition-based stats. Identities = 128/653 (19%), Positives = 250/653 (38%), Gaps = 34/653 (5%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245 + A + + K + V+ + + + + + + Sbjct: 166 RVEERTAALRESEAKLEAMLNFAPAVIYVKDLQGRHTFVNRAFLKLFNCTLADIIGKVNH 225 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + EK + E + E+ TI+ YT + L + +++ + Sbjct: 226 DFYPPEVADVFEKNDRIVIESCHFHQLEEEVTIHDQNYTFLSHKFILFDQNQQPYALCGI 285 Query: 306 RNHPSLSAY----FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 N + + T+ P F + S G PS + Sbjct: 286 SNDITQRKAFYNALQRSQEQLKATLQAIPDLVFRLNSQGEYLAIYPS--EYVGNLVDIKL 343 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 I + LL P + + + L + + + + E + P Sbjct: 344 AIGHSIKELLPPPIAAKYSQVTQTALATNTLQTYEQDVVIDGVLRHEE----VRVAPCGD 399 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG--IIL 475 + + + + + + I G+ +++ +G + Sbjct: 400 HEVVFVIRDISEQQAALRERQKAAATIRKSEDRFARIANNMP-GVLYQYVLHPDGSHNFI 458 Query: 476 STNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + ++FG + I R E + + S + E + Sbjct: 459 YISERCQQIFGLDADTITRDANELFRLFESEDFISLKSSILLSASTLNTWSWEGKLITPF 518 Query: 534 KEEKLLS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 E+K + + ++ + + DISE K + KL ++ + K +FLA + Sbjct: 519 GEKKWIQGISQPEQQPNGDILWDGVVVDISERKLMEIKLQKTVAELDRATRLKDEFLANM 578 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL I+G SE +K G L NP I++SG +L++++D+LD+SKIE+ Sbjct: 579 SHELRTPLNGILGMSEALKQGILGTL-NPNQHHAIAMIEKSGKHLLELISDILDLSKIEA 637 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALN 710 GK+ L+ VS+ E + +++LV A K+I I ++ + + I D R ++Q+ +N Sbjct: 638 GKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIESNIPQQLQKTFIKVDNRRLRQVLIN 697 Query: 711 ILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +LSNA+ FT G+I ++ + + + V D G+G+ +L+K PF Q Sbjct: 698 LLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSIYFSVVDNGIGIATDDLDKLFLPFTQ 757 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 I +S + GTGLGL L K +++ + G + S KG+ + P +TS+ Sbjct: 758 IDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYNETSN 810 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 3/202 (1%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448 T T Q L+++ A + + ++ R+ +R + Sbjct: 116 GTFAVYFKTCRTPQNQDLEILSLSAHIASIAIERDRTTQALADLNQQLEVRVEERTAALR 175 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +L ++L I + + +G NRA KLF + DI+ K F V Sbjct: 176 ESEAKLEAMLNFAPAVIYVKDLQGRHTFVNRAFLKLFNCTLADIIGKVNHDFYPPEVADV 235 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTMHDISEWKQE 567 ++ LE+ + LS I+ + +DI++ K Sbjct: 236 FEKNDRIVIESCHFHQLEEEVTIHDQNYTFLSHKFILFDQNQQPYALCGISNDITQRKAF 295 Query: 568 KNKLSHAKKIAEKESSHKSDFL 589 N L +++ + D + Sbjct: 296 YNALQRSQEQLKATLQAIPDLV 317 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 36/380 (9%), Positives = 103/380 (27%), Gaps = 26/380 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 D G ++ K +IG D D + +++ + + Sbjct: 196 DLQGRHTFVNRAFLKLFNCTLADIIGKVNHDFYPPEVADVFEKNDRIVIESCHFHQLEE- 254 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + ++ +N++ + GI + +R ++ Sbjct: 255 --EVTIHDQNYTFLSHKFILFDQNQQP--YALCGISNDITQRKAFYNALQRSQEQLKATL 310 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN---KVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + + + + + K + Sbjct: 311 QAIPDLVFRLNSQGEYLAIYPSEYVGNLVDIKLAIGHSIKELLPPPIAAKYSQVTQTALA 370 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE------SFEYLSHRNHPSLSAYFDEGE 319 ++L E I+ ++ ++ S + + R +A + E Sbjct: 371 TNTLQTYEQDVVIDGVLRHEEVRVAPCGDHEVVFVIRDISEQQAALRERQKAAATIRKSE 430 Query: 320 NLTPETVDKCPIPFFVY-----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + P + Y N Y + + + A L L ++ Sbjct: 431 DRFARIANNMPGVLYQYVLHPDGSHNFIYISERCQQIFGLDADTITRDANELFRLFESED 490 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + ++L S + +L I E + Q ++ +G+ Sbjct: 491 F--ISLKSSILLSASTLNTWSWEGKL--ITPFGEKKWIQGIS--QPEQQPNGDILWDGVV 544 Query: 435 PEDVDTRINKRKMEIEVMQL 454 + + ++ + K++ V +L Sbjct: 545 VDISERKLMEIKLQKTVAEL 564 >gi|148263614|ref|YP_001230320.1| multi-sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] gi|146397114|gb|ABQ25747.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter uraniireducens Rf4] Length = 832 Score = 353 bits (907), Expect = 6e-95, Method: Composition-based stats. Identities = 139/819 (16%), Positives = 285/819 (34%), Gaps = 112/819 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G I++ + +G ++IG + D+ + K + + Sbjct: 26 LDKDGVFTRINDTELRWLGYSREEVIGKIKFHDLITDRSLKTFQDNFPQFKVRGWVHDLE 85 Query: 148 T-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----- 201 + +G+ +P+ L+A + + + R V+ +L Sbjct: 86 FEMVRKDGSI--LPVLLSASAVTDPDGNYVMSR--STVYDITERKRAEREIVQLAAIVEF 141 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + G + + + + + ++ +L + Sbjct: 142 SDDAIIGKTPDGIITSWNKGAERIYGYTADEIVGKPISTLVPADHADEVPQILDKIRRS- 200 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E + + ++ + + ++ + Sbjct: 201 ----EHIEHYETVRRRKDGQLIEMSLAISPIREREGKITGASTIGRDITVQKRTESINMA 256 Query: 322 TPETVDKCPIPFFVYSHGN-----------------LFYANPSFLLLTKYKSVDD----- 359 + A+ L L + + Sbjct: 257 RLRLLQFAATHTLDELLETTLNEVEVLTGSLIGFYHFLEADQKTLSLQNWSTRTKKEYCL 316 Query: 360 ---------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR-TCIAASARLHTIQWNREN 409 + AG + + +N + + L + E+ Sbjct: 317 AEGKGRHYNVSEAGVWVDCIHERRPVIHNDYSSLPHRKGLPAGHSPVVRELVVPVFRGES 376 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 +A+ + + + ++ + + + ++++E + L +I+E + D I I+ Sbjct: 377 IVAILGVGNKPRDYTTHDVETVSLLADLAWEVVERKRIEEALSLLAAIVEFSDDAIIGIS 436 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 EG I+S NR +L+GYP E++ P ++ + + P M + L + + T Sbjct: 437 PEGTIVSWNRGAERLYGYPAEEVKVCPVSILIPDDHPEEMAYILDHVRQGKPIER--HET 494 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE---- 581 + K+ + + + I + S + DI+E K+ + +L + E+ Sbjct: 495 VRLRKDGSRVEVSVTISPICNSGGKIIGASTIARDITELKKAEIELRKLNEELEQRVIER 554 Query: 582 ------------------------------------------SSHKSDFLARVSHEIRTP 599 KS F+A +SHE+RTP Sbjct: 555 TADLNRRSTELSESQQALMNIVEDLNEKTDELEGANTKLKEFDRLKSMFIASMSHELRTP 614 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L +IIGFS VI N+ GP+ N E I R G +L+++ND++D+SKIE+GK+ Sbjct: 615 LNSIIGFSSVILNEWIGPV-NAEQKENLAIILRCGKHLLNLINDVIDVSKIEAGKIESVA 673 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + +SEA+ LV+ EK + ++ + + ++ D R + Q LN+LSNA+ FT Sbjct: 674 EEFDFYDLISEAVGLVRKDMEEKGLDLQVAATHQ--QMHMDRRRLLQCVLNLLSNALKFT 731 Query: 720 PSGGQIIISTTH-------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 GG + + T + V DTG+G+ +L K +PF ++ + Q Sbjct: 732 EHGG-LTVETRIMPCPGEAPEAGVAEISVTDTGIGIREEDLPKMFQPFVRLASPLQATVP 790 Query: 773 GTGLGLPLAKAM-VDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL L + + + G + S KG+ + P+ Sbjct: 791 GTGLGLYLTRKLAAEVLKGDILLTSEYGKGSRFTLRIPV 829 Score = 119 bits (299), Expect = 2e-24, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 90/283 (31%), Gaps = 18/283 (6%) Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + P + + G N + L Y + I + D Sbjct: 3 RALRTTIEELADLYNNAPCGYHSLDKDGVFTRINDTELRWLGYSREEVIGKIKFHDLITD 62 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + + L + + + Sbjct: 63 RSLKTFQDNFPQFKVR------GWVHDLEFEMVRKDGSILPVLLSASAVTDPDGNYVMSR 116 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + +R E++QL +I+E + D I +GII S N+ +++GY ++ Sbjct: 117 STVYDITERKRAER----EIVQLAAIVEFSDDAIIGKTPDGIITSWNKGAERIYGYTADE 172 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 I+ KP + + + + L +I T+ K+ +L+ + + I + Sbjct: 173 IVGKPISTLVPADHADEVPQILDKIR--RSEHIEHYETVRRRKDGQLIEMSLAISPIRER 230 Query: 552 SCYS----LTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFL 589 DI+ K+ ++ ++ + + + + L Sbjct: 231 EGKITGASTIGRDITVQKRTESINMARLRLLQFAATHTLDELL 273 >gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 608 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 105/540 (19%), Positives = 213/540 (39%), Gaps = 50/540 (9%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351 L ++ + +H + EG D Y + N + + Sbjct: 95 LGDSDHDPRSMDNHLQRVEVQQALHEGVGRGIRLSDTVNQNML-YVAVPITMDNHQYFIR 153 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRE 408 D + L T L L V + IQ Sbjct: 154 LAMSLQDVEQSIRDLWTALIIWLLVLFVVAALVSYRVALGMTRPLEQITKVAKRIQRMDY 213 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + +K+++ + + + ++ + + QL S+L+ +GI +I Sbjct: 214 RARV----DVKKSDEIGDLGYAINAMADSLQVQMER--IRQNESQLESVLDNMINGIIMI 267 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 +R G I+ +R ++ G +++ + +T +Q+ S + + + + + + Sbjct: 268 DRSGHIVLLSRRAEEILGISARELVGRHYTEARQQHELSQLI-----AEAFEKQTYIHEE 322 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 EE+LL L I+ L + D+S ++ + +S Sbjct: 323 MTFYYPEERLLELNIVPMLQDKDDFVGVLLVLQDVSAIRRLE--------------RMRS 368 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +F+A VSHE++TP+ A+ GF+E + + I + ++ D+L+ Sbjct: 369 EFVANVSHELKTPVAAVKGFAETLLGGAVN--DEETARSFLQIIYDESERLNRLIGDILE 426 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +SKIES ++ L PV +D ++ + L++ AN KRI + + I + AD ++Q Sbjct: 427 LSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDEI-YVEADEDRLRQ 485 Query: 707 IALNILSNAIHFTPSGGQIIISTT----------------HTSNEEVILRVRDTGVGMTN 750 I +N+LSN I++TP GG++ ++ + + + ++DTG+G+ Sbjct: 486 IMMNLLSNGINYTPEGGKVTVTVEPVWPASTGRSLLTDEERDDYDRIRITIKDTGIGIPK 545 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +L + + F ++ ++ GTGLGL + K +V+ + G + S GT I P+ Sbjct: 546 KDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVEMHNGSIAVESEVGVGTKFIIELPV 605 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 23/230 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G++ +S + +G A +++G + + I + ++Q + + T Sbjct: 267 IDRSGHIVLLSRRAEEILGISARELVGRHYTEARQQHELSQ--LIAEAFEKQTYIHEEMT 324 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + E L +L +P+ +F G + + +RL++ S Sbjct: 325 FYYPEERLL----ELNIVPMLQDKDDFVGVL---------LVLQDVSAIRRLERMRSEFV 371 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 F++ + + S + + + L +L Sbjct: 372 ANVSHELKTPVAAVKGFAETLLGGAVNDEETARSFLQIIYDESERLNRLIGDIL------ 425 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 E + + + + + E ++R +L D+ Sbjct: 426 --ELSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDE 473 >gi|86159947|ref|YP_466732.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776458|gb|ABC83295.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1088 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 105/784 (13%), Positives = 223/784 (28%), Gaps = 83/784 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTT 148 D G + + + G A +++G + + I +L + + +T Sbjct: 200 DLDGVILTWNRAAERLFGYAADEVVGRSVTLLIPPDRRHEEAEILAELRAGRRVEHFETQ 259 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT L V + ++ P+ G IV A+ + Sbjct: 260 RVRKDGTRLDVSVTVS--PVRDEEGRLVGASK--IVRDISEQKRSEAVLAAALGRAQEER 315 Query: 209 EIKKGHSSVEKEK----------------YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + P P + + Sbjct: 316 RRLAAVLEALPAGVVITDAEGGFTEVNAEFKRIWGTPPNPQRMSEYAAWRGWWPDGRPVE 375 Query: 253 VLKTEKYPLLTSEESSLPEQ-------------EDFHTINLNQYTKKQYFGTLQNNSKES 299 + L++ + +P + + + G + + Sbjct: 376 TREWALSRALSTGDVIVPGDIVDIEKFDGSGRATIINAAAPIRNAEGTIVGAVLAEVDVT 435 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSV 357 + E ++ + + G N +F + Sbjct: 436 EQRRVEDALRRAEEAARASEARFRSVFEQAAVGMGRVRFDDGRWIDVNDAFCRMLGRSRE 495 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 D + ST A ++ + R + + + + Sbjct: 496 DML------STPWPAMTHPEDLELDLGPFRRMSAGELDSYTIEKRFLHADGHEVWAKLTL 549 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + I + D + + + +L +++E ++G+ I + G I Sbjct: 550 SLVRDARGRPDYEIAIIEDIGDRKRAETALREHEERLRAVMEHMAEGLVIFDPSGNITYQ 609 Query: 478 NRAVSKLFGYP--------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 N A + + +L + E + + +L + Q Sbjct: 610 NPASVSIHDRRLAGERRRLDQLVLNWRVRRYPEGIEVPPRDWAIPRVLRGERVQNERFFV 669 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + + T+ +I+E + ++ L A + + K Sbjct: 670 DCVEDPGRSFVGIYSGSPVHDAGGKLAYGFLTIEEITEQARAESALRDANEKLREVDRRK 729 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FL +SHE+R PL I I + R + + + R + +V+DLL Sbjct: 730 DEFLGMLSHELRNPLAPIRNSL-YILDHAEPAGQQARRAK--DIVARQVEHLTRLVDDLL 786 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+++I GK+ L E + + + + + + + D + Sbjct: 787 DVTRIARGKIELRREDLDVVGLARRVAEDHRSLMQGRGVELTIDLLPGALTVNGDPARLT 846 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ N+L+NA FTP GG++ +S + LRVRDTG G+ L +PF Q Sbjct: 847 QVLGNLLNNAAKFTPPGGRVTLSVRAE-GDRAALRVRDTGPGIAPDVLPTIFEPFFQAKQ 905 Query: 766 SQQIRG------------EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812 + V + G+ + +S +GT + PL Sbjct: 906 TLARSEGGLGLGLALVKGL------------VALHGGEVHAYSAGQGQGTEFVVTVPLAG 953 Query: 813 TSHP 816 P Sbjct: 954 RGLP 957 Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 47/561 (8%), Positives = 127/561 (22%), Gaps = 52/561 (9%) Query: 63 SNTNYLDSENTFVFDPIPRTVRFT------WNIDAHGYLKEISEELPKTIGNYAFKMIGM 116 SN + +D + + + + +DA + ++ + + +G Sbjct: 51 SNADCMDRDPGHTHEEAAHALELLEFGDAFFELDAQWRIVRVNRRQEELSRKPRSETVGR 110 Query: 117 RLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 L +V L ++ + + P++ + + A P+ Sbjct: 111 TLAEVWPELAGPESRYRREYDRCMRERVPVQFQAYYAPLD-----LWTGVTAYPVS---- 161 Query: 174 EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 G + RL + ++ Sbjct: 162 ----AGGIAVFFRDITRIKRAEQEQTRLAAIVESTDDAIVA-KDLDGVILTWNRAAERLF 216 Query: 233 HLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 V D + E L + + + + Sbjct: 217 GYAADEVVGRSVTLLIPPDRRHEEAEILAELRAGRRVEHFETQRVRKDGTRLDVSVTVSP 276 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFD-----------EGENLTPETVDKCPIPFFVYSH-G 339 +++ S + E ++ P + G Sbjct: 277 VRDEEGRLVGASKIVRDISEQKRSEAVLAAALGRAQEERRRLAAVLEALPAGVVITDAEG 336 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 N F + + S I Sbjct: 337 GFTEVNAEFKRIWGTPPNPQRMSEYAAWRGWWPDGRPVETREWALSRALSTGDVIVPGDI 396 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVM 452 + +++ + N + E + + R + Sbjct: 397 VDIEKFDGSGRATIINAAAPIRNAEGTIVGAVLAEVDVTEQRRVEDALRRAEEAARASEA 456 Query: 453 QLCSILEATSDGI--AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + S+ E + G+ + +G + N A ++ G ED+L P+ + Sbjct: 457 RFRSVFEQAAVGMGRVRFD-DGRWIDVNDAFCRMLGRSREDMLSTPWPAMTHPEDLELDL 515 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQ 566 + + +L + + ++ + + + + DI + K+ Sbjct: 516 GPFRRMSAGELDS-YTIEKRFLHADGHEVWAKLTLSLVRDARGRPDYEIAIIEDIGDRKR 574 Query: 567 EKNKLSHAKKIAEKESSHKSD 587 + L ++ H ++ Sbjct: 575 AETALREHEERLRAVMEHMAE 595 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 109/339 (32%), Gaps = 29/339 (8%) Query: 260 PLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +SLP + D + G +++ + + E Sbjct: 7 ASSPGRRASLPGRCRDRPACRGPPRSPVPGCGGIRHVPTCVSWSSNADCMDRDPGHTHEE 66 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E ++ F + + + N L++ + + L+ + ++ Sbjct: 67 AAHALELLEFGDAFFELDAQWRIVRVNRRQEELSRKPRSETVGRT--LAEVWPELAGPES 124 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + +R + A + W + ++ + Sbjct: 125 RYRREYDRCMRERVPVQFQAYYAPLDLWTGVTAYPVS------------AGGIAVFFRDI 172 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ E +L +I+E+T D I + +G+IL+ NRA +LFGY ++++ + Sbjct: 173 TRIKRAEQ----EQTRLAAIVESTDDAIVAKDLDGVILTWNRAAERLFGYAADEVVGRSV 228 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556 T+ + + L E+ + + T K+ L + + + + + Sbjct: 229 TLLIPPDRRHEEAEILAELRAGR--RVEHFETQRVRKDGTRLDVSVTVSPVRDEEGRLVG 286 Query: 557 ---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + DISE K+ + L+ + + A + Sbjct: 287 ASKIVRDISEQKRSEAVLA---AALGRAQEERRRLAAVL 322 >gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB] gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB] Length = 1028 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 111/668 (16%), Positives = 214/668 (32%), Gaps = 67/668 (10%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 L R + + + + P + +V++ + + Sbjct: 221 LDARQLRVINPQPPGDFPLVRSTRLYPEWPVAAMPWTENNLARQVAAAILSLPADGETAR 280 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-----TLQNNSKESFEYLSHRNHP- 309 T E P E + L+ + F L Sbjct: 281 AMNIHGFTIPEDYRPVDELMRQLRLSPFDAPPKFTINDVFVQFGAVIAVIAILGISVLIA 340 Query: 310 ------SLSAYFDEGENLTPETVDKCPIPFFVYS----------------HGNLFYANPS 347 + T T+ + + G + Y N + Sbjct: 341 IVLALFRTIRRLKGERSRTKATMAQLSAAEARFRAIFDNVETLAIQGYLADGTVAYWNNA 400 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 Y + + + L ++ D M RL + + Sbjct: 401 SQTTYGYTAQEAL-GKSLLDLIIPPAMREDVRGAVQWMFSHKTGIP---PGRLKLQRKDG 456 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + M I + ++ + + IL+ +G+ Sbjct: 457 STVEVYSSHTVIDTADKGPMMFCLDI--NLTELVHTEQALIESESRQRMILQTLGEGVYG 514 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE---ILSLDLRQT 524 + +G+ N A G ++ L K + L E IL+ Q+ Sbjct: 515 TDLDGVCTFINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECPLILTARDGQS 574 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA------- 574 + K + +R+ I ++ DISE ++ +L Sbjct: 575 RRLEDVFWRKNGECFPVRLTITAKLRDGVITGVVVSFADISENRRVAKELEQHHTHLEAQ 634 Query: 575 -----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ AE + KS FLA +SHEIRTPL A++G +++ Sbjct: 635 VRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRRDA----PTLEQ 690 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 I+ + ID + +L ++ND+LDISKIE+GK+ L V + + +S++ A +K Sbjct: 691 IDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQKG 750 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739 + +R + + D + Q +N NA+ FT G I + +++ + Sbjct: 751 LELRVLADDFPHTFIGDPTRITQCLINYAGNAVKFTEHGS-ITLKARRMADDSNGVLIRF 809 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTG+G+++ +++ F Q +S + GTGLGL + + + + GK + S Sbjct: 810 EVEDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAELMGGKVGVSSRVG 869 Query: 800 KGTLIEII 807 G+ Sbjct: 870 AGSRFWFT 877 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 26/267 (9%), Positives = 64/267 (23%), Gaps = 12/267 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KR 139 + D G I+ +G + +G + D + Sbjct: 512 VYGTDLDGVCTFINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECPLILTARD 571 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALG 197 + + W G V + + A R+ +G I RV + Sbjct: 572 GQSRRLEDVFWRKNGECFPVRLTITAKL---RDGVITGVVVSFADISENRRVAKELEQHH 628 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 L+ + E + + S ++ ++++ T Sbjct: 629 THLEAQVRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRRDAPTL 688 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + S + ++ +K + + + + + R L + Sbjct: 689 EQIDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQ 748 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYA 344 D P F+ + Sbjct: 749 KGLELRVLADDFPHT-FIGDPTRITQC 774 Score = 41.2 bits (95), Expect = 0.84, Method: Composition-based stats. Identities = 30/369 (8%), Positives = 86/369 (23%), Gaps = 27/369 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYGKT 147 A G + + T G A + +G L D+ + + + G+ Sbjct: 390 ADGTVAYWNNASQTTYGYTAQEALGKSLLDLIIPPAMREDVRGAVQWMFSHKTGIPPGRL 449 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L +G+ + V ++ + + G F + + + + Sbjct: 450 KLQRKDGSTVEV---YSSHTVIDTADK--GPMMFCLDINLTELVHTEQALIESESRQRMI 504 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + +++ + PL Sbjct: 505 LQTLGEGVYGTDLDGVCTFINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECP 564 Query: 266 -------ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYF 315 S ++ F N + + + + + + ++ Sbjct: 565 LILTARDGQSRRLEDVFWRKNGECFPVRLTITAKLRDGVITGVVVSFADISENRRVAKEL 624 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDA 372 ++ V + + AN +FL ++ + G+ LL Sbjct: 625 EQHHTHLEAQVRQRTEQLEIARQ-AAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRR 683 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + + + +A + I L + + Sbjct: 684 DAPTLEQIDRLDKIDSASQHLLAVINDILDISKIEAGKLVL---DETTVDITSILKRVVS 740 Query: 433 IEPEDVDTR 441 + + + Sbjct: 741 VLGDRARQK 749 >gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena XCL-2] Length = 1410 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 176/378 (46%), Gaps = 18/378 (4%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E +++++ QL ++++ I + N +G ILS NR K + +++ Sbjct: 777 EVKQRLQAEKRLKENETQLQGLIDSIPLMIMVTNHQGKILSANRQTLKNYQLNFQELSEL 836 Query: 496 PFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSS 552 T F + + + + L Q +KI + + + L ++ Sbjct: 837 NSTTFYSDPDDRQQILNALQA-----GEQIHQKIISMKDADGIPRKMMLSVLPIHFNQQP 891 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D++E Q + +L AK+ AE S KS FLA +SHEIRTP+ AIIGF+E++ Sbjct: 892 ANLSIAIDLTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNE 951 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q + PR Y I +G +L ++ND+LD+SKIE+GKM+L + V+ E Sbjct: 952 Q----VTEPRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIG 1007 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTT 730 + + K + +P +L D ++QI N+L NA+ FT G ++ +S Sbjct: 1008 QIFMINIQRKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSAC 1067 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++++V DTG+G+ + + F Q N + GTGLGL + + +V+ Sbjct: 1068 DVDEHHSKLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVN 1127 Query: 787 ANMGKFYIFSTPAKGTLI 804 G ++ STP +GT Sbjct: 1128 MMGGDIWVESTPGQGTTF 1145 >gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis EO147] Length = 749 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 110/626 (17%), Positives = 204/626 (32%), Gaps = 31/626 (4%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 ++ + I + + S L + + + Sbjct: 5 ARRRAKNYAVIAGFVVIATLLQAALVHFGSADMPLTPYFPFIAAAAWATSLGGGIGATLA 64 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDE 317 + L + + + + F + L +L Sbjct: 65 SAVLIWVMFLSDTVAYPGPLSARIVQLATFVIVNGAICAIVAALKRSRRMNEALRRREAL 124 Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + V G L Y NP+ L + Sbjct: 125 ARRYYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGC-DATAVRGLPFRDVFNAYDSRG 183 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + H + + + + + + I + Sbjct: 184 ERARSTALEQVLRSGASATVE--RHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRD 241 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 R L ++EA+ D I + + I S N A ++FGY + + Sbjct: 242 ISGERERAAA----NRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRD 297 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + H L LS L + ++ L + + + Sbjct: 298 VAMLIAPRWRR--RHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACV 355 Query: 557 ----TMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D E ++ + + H+ ++ A+ + K + LA VSHE+RTPL I G Sbjct: 356 ALSLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYG 415 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + EV++N G L + + IDRS + +V D+LD S + +GK+ L PV L Sbjct: 416 WIEVLRNPAGGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V++ + A + + + A + D ++Q+ N+LSNA FTP GG++ Sbjct: 472 RIVNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRV 531 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S ++ L V DTG G++ L + F + S G GLGL + + + Sbjct: 532 TVSL-MRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIA 590 Query: 786 DANMGKFYIFSTPAK--GTLIEIIFP 809 + + GK + S K GT + P Sbjct: 591 ELHGGKVEVASA-GKRLGTTFTVTLP 615 Score = 72.8 bits (177), Expect = 3e-10, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 55/232 (23%), Gaps = 5/232 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D G L ++ IG A + G+ DV + L+ R Sbjct: 144 DRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERARSTALEQVLRSGASATV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI A P+ + +G IV + + A + L + Sbjct: 204 ERHWLASRDGPRVPIAEVASPLVDSAGDMNGA--VLIVRDISGERERAAANRMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G + + + + + + + A + L E Sbjct: 262 SPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + ++ + ++ + Sbjct: 322 PIENVDVLCARQDGSRLRATLSASPVFDDRDACVALSLTLRDTGEQRRRERR 373 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 55/208 (26%), Gaps = 22/208 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + A + + + G G + + + L Sbjct: 269 VGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYEPIENVDV 328 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L+A P++ + AL L Sbjct: 329 -LCARQDGSRLRATLSASPVFDD------------------RDACVALSLTLRDTGEQRR 369 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ H S+ + +++ R+K+++ + + + +L + Sbjct: 370 RERRTHHSLRGARD---ARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGG 426 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNS 296 +Q+ I+ + + + G + + S Sbjct: 427 ALQQQAIDAIDRSARSLSRMVGDILDAS 454 >gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1486 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 106/523 (20%), Positives = 196/523 (37%), Gaps = 25/523 (4%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + E L N + A E+ +D+ I G + YAN F ++ Sbjct: 413 DAKARHEEALLEANSQVMEALDSLEEHKFA--LDQHAIVAVTDLKGTITYANDKFSEISG 470 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 YK D I + + + + S + + Sbjct: 471 YKVDDLIGQ----NHRILNSGFHPSEFFSEMYRTVSKGKVWHGEICNRNKR---GEIYWV 523 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + I + + + + ++ + + + LE+T +GI + + +G Sbjct: 524 DTTIMALKDTRNLPKSYIAIRADITERKRTEIAVKEALSLMNATLESTDNGILVTSIDGE 583 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 IL TN S L+G +++L K + V+ L ++ Sbjct: 584 ILRTNCQFSHLWGV-AKELLDKGVNDRVILKQIKVLLKKPETFLKRVEEIYEDRELEAFD 642 Query: 534 K----EEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + ++ ++ + DI+E + +N L AK+ AE + KS+F Sbjct: 643 TIALIDGRVFERASSPMEVDGEYFGRVWSFRDITERTENQNALLQAKEEAELATKAKSEF 702 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ +IG ++ N + + S +L ++ND+LD S Sbjct: 703 LASMSHEIRTPMNGVIGMLGLLSNSKL----TEYQNRRVSIAQSSAQSLLSLINDILDYS 758 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQI 707 KI++GK+ L +L + + + A K++ + + D ++Q Sbjct: 759 KIDAGKLELEQIDFNLRGMLGDFAEGIAHQAQNKKLELILDLKGVEQSMVTGDPGRLRQA 818 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763 N+ NAI FT G ++++ E +I V DTG+G+ +++ K F Q+ Sbjct: 819 ITNLTGNAIKFTKQG-EVVVRAELKPAHEGKWWLICSVSDTGIGIPADKIDGLFKSFSQV 877 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 S + GTGLGL + K + G + S G+ EI Sbjct: 878 DASTTRKYGGTGLGLAIVKKISRLMGGDVSVSSVYGIGSCFEI 920 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 38/372 (10%), Positives = 92/372 (24%), Gaps = 25/372 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G + +++ + G +IG ++ H + + + + W+G+ Sbjct: 452 TDLKGTITYANDKFSEISGYKVDDLIGQNHRILNSGFHPSEFFSEMYRTVSKGKVWHGEI 511 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G +V + AL R I K + Sbjct: 512 CNRNKRGEIYWVDTTIMAL---KDTRNLP-KSYIAIRADITERKRTEIAVKEALSLMNAT 567 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E V +I + + + + K + + + Sbjct: 568 LESTDNGILVTSIDGEILRTNC------QFSHLWGVAKELLDKGVNDRVILKQIKVLLKK 621 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + I ++ + L + ++T T + Sbjct: 622 PETFLKRVEEIYEDRELEAFDTIALIDGRVFERASSPMEVDGEYFGRVWSFRDITERTEN 681 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + + A FL ++ + G+ LL KL++ + + Sbjct: 682 QNALLQAKEEAELATKAKSEFLASMSHEIRTPMNGVIGMLGLLSNSKLTEYQNRRVSIAQ 741 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 S ++ ++ + L + I F + Sbjct: 742 SSAQSLLSLINDILDYSKIDAGKLELEQIDFNLRGMLGDFAEGIAH-------------- 787 Query: 448 EIEVMQLCSILE 459 + + +L IL+ Sbjct: 788 QAQNKKLELILD 799 >gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1126 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 137/799 (17%), Positives = 271/799 (33%), Gaps = 81/799 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 ++E +G IG R ++ D + T Sbjct: 28 ELRYVAVNEAYADFLGREISDFIGRRSRELFDRPEEEEREDRERRALVFGTEENAICFDA 87 Query: 152 IEGTNLYVPID-LAALPIYS--------RNREFSGFRGFG---IVHVNRVDNDPRALGK- 198 + + I+ + P + R+R G G V+ + + AL + Sbjct: 88 AGLGHERIQIESFSPSPDRAYVLGVFEVRDRRAVGRETGGSPRTVNDSDLAQVREALERL 147 Query: 199 --------------------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------- 230 R K + + + S E + + P Sbjct: 148 EQPIGIFAEDGRPLVVNAAYRTGAKPAARSDTRWHESVNEGDLLRTIMEDLPVAVFVRDD 207 Query: 231 ------------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 +++V +TE+ + + + E L ++ + Sbjct: 208 KHRLVYANRYYETFGGYDRSQVLGMTEHEMFGPEEGEAIYQENRLALEDGLSKEIESQMP 267 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHR------------NHPSLSAYFDEGENLTPETV 326 + + + + Y+ + + Sbjct: 268 GRDGRIHPLISRVNRVVTADGRTYVVGSFSDIAPLKEREKALIEAKKQEEALHRDIESIL 327 Query: 327 DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 PI + + + AN F + + D + + + +L + + Sbjct: 328 RSLPIGVLILDNDHRILSANDEFYSIWELPLDDPFDGRHFVDVIRRNNELGRYDGTQTAE 387 Query: 386 LYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + R + + I+ W S+ + + + + Sbjct: 388 EIYAFRKHLFETDEPEPIELGWAGGKSVIFDSRRISNDRILLTYADISAVREREKEIHET 447 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFL 501 + +E + A S G+AI+ ++GII +N A++ + P + + +F Sbjct: 448 RAALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNEAMAAILQIPPAYIEAGQGWLGMFE 506 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + EIL + + + + + + + D Sbjct: 507 FCAARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWVNMDAM-VSEGQHWVALFTD 565 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E K + +L H AE KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 566 VTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 622 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R + + I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A Sbjct: 623 -RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAA 681 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738 EK I + A ++P ++ D +QI N++ NA+ FT G + + + E++ Sbjct: 682 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFEAAAGGEIM 741 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +R+ DTG+G+ +LE F Q+ S R EGTGLGL + +VD G + S Sbjct: 742 ASIRIEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 801 Query: 797 TPAKGTLIEIIFPLYDTSH 815 KG++ + P + Sbjct: 802 EWGKGSVFTVNLPFAVAAA 820 Score = 47.3 bits (111), Expect = 0.011, Method: Composition-based stats. Identities = 34/415 (8%), Positives = 89/415 (21%), Gaps = 36/415 (8%) Query: 66 NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125 ++ + V + D L + G +++GM ++ Sbjct: 183 ESVNEGDLLRTIMEDLPVA-VFVRDDKHRLVYANRYYETFGGYDRSQVLGMTEHEMFGPE 241 Query: 126 HIDP-------------NNHIGDLLKRQNTW-----YGKTTLWPIEGTNLYVPIDLAALP 167 + + I + ++ + +G V P Sbjct: 242 EGEAIYQENRLALEDGLSKEIESQMPGRDGRIHPLISRVNRVVTADGRTYVVGSFSDIAP 301 Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + R + + + D ++ + L L + S+ ++ Sbjct: 302 LKEREKALIEAKK----QEEALHRDIESILRSLPIGVLILDNDHRILSANDEFYSIWELP 357 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 P R V D E+ E E + Sbjct: 358 LDDPFDGRHFVDVIRRNNELGRYDGTQTAEEIYAFRKHLFETDEPEPIELGWAGGKSVIF 417 Query: 288 YFGTLQNNSKESFEYLSHRNHPSL------SAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 + N+ A + + + + G + Sbjct: 418 DSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAIVQDGII 477 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 +N + + + G L D + +L A Sbjct: 478 KMSNEAMAAILQIPPAYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIAARQPIST 537 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 E + M + E + + + + + ++ + + + Sbjct: 538 VFHVGGERWVNMDAMV-------SEGQHWVALFTDVTELKSREEELRHLLSRAEA 585 >gi|295681455|ref|YP_003610029.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441350|gb|ADG20518.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 868 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 111/753 (14%), Positives = 240/753 (31%), Gaps = 45/753 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F W D G ++ + + +G A +++GM ID ++ Sbjct: 11 FVWRADRDGVVRYANPWTSRYLGIPALELVGMHWKTFVHPDDIDHVLDAVRQMRDGTLLG 70 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + Y L + G+ A+ + +++ Sbjct: 71 NVEVRL-LRADGEYRWHVLHLQAERDASGRIGDT--VGVATDIHEARHAWAMYEASERRL 127 Query: 205 SHLH----------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 ++K+ + + D++ L + + + + Y Sbjct: 128 KAAFHGARMGAWEWDMKRRVVRMTSQLADLYGFPPGTDALALSDLENRVEPEYRALFQRK 187 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + E + + + + + Sbjct: 188 VDDALQHGGPFEFDFVLNGGSPSPRWLRMRGHAEYEH-GTLAHVYGVTFDISKERAAEEQ 246 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E V+ + +G++ A + T +V + G L + Sbjct: 247 LSLSERRYRVLVESTGALVWSAEPNGDIRPAGEDWSRFTGEGAV-RLADWGWLDYVHPDD 305 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + V+ R+ + + ++ + M + + G Sbjct: 306 REAARQGWVDVLQRRAPGSI------MFRMRHHDGQYRMMHAQAAPLFDSHGKLQEWFGT 359 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPVEDI 492 + + +E ++L ++A I + LS ++ D Sbjct: 360 TTDVTPQYEAQLAIEARNLRLSVAMQAARLNIVCFDLASRTLSFEEGRAPRIDHVLSYDE 419 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + + +++ Y+ + + + + + Sbjct: 420 ALRNV----HPDDRAMLEQYVLRLAEGNDP-VANFEFRLQNAHGEQ-WMHGSALLQRGAD 473 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ DI++ KQ + L + K +FLA ++HE+R PL + Sbjct: 474 GKPLRIIASVIDITQRKQLELML-------RETDRRKDEFLAMLAHELRNPLAPLRTAIA 526 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + +++ G P+ E N + R + IV+DLL++S+I G++ L EPV + AV Sbjct: 527 -LLDKQPGTASRPQ--ELINLMRRQVEHMTRIVDDLLEVSRITQGRIVLQLEPVLVGTAV 583 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ + A + + S + + D+ + QI +NIL+NA +TP G I ++ Sbjct: 584 YHAVEAIAAMAEARHQQLHVSVCDPTTWVCGDITRISQIFVNILNNASKYTPENGHITVN 643 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +E V + +DTG G++ L K + F Q + G G+GL L K +V+ + Sbjct: 644 VA-ADDEWVSIVTQDTGTGISAELLPKVFELFSQGERTLDRSDGGLGIGLSLVKKLVEMH 702 Query: 789 MGKFYIFST-PAKGTLIEIIFPLYDTSHPHDCI 820 G + S P GT + + P H + Sbjct: 703 NGTIAVHSEGPNLGTTVTVRLPRLHHHERHSAV 735 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 11/125 (8%), Positives = 38/125 (30%), Gaps = 6/125 (4%) Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +R+G++ N S+ G P +++ + F+ + + + ++ Sbjct: 8 LPSFVWRADRDGVVRYANPWTSRYLGIPALELVGMHWKTFVHPDDIDHVLDAVRQMRDG- 66 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576 + + + ++ +S DI E + +++ Sbjct: 67 -TLLGNVEVRLLRADGEYRWHVLHLQAERDASGRIGDTVGVATDIHEARHAWAMYEASER 125 Query: 577 IAEKE 581 + Sbjct: 126 RLKAA 130 >gi|57235045|ref|YP_180877.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57225493|gb|AAW40550.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 1061 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 102/751 (13%), Positives = 250/751 (33%), Gaps = 68/751 (9%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQN--TWYGKTTLW 150 + +I++ + +G +++G + + + ++ ++ + + Sbjct: 331 VLQINKRGCEILGYEYQEIVGRNWFESFVPGYRRLIKHSMYKQIISGKADLPERYMDVVL 390 Query: 151 PIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + + + I S++ + + G + ++K+ L E Sbjct: 391 TKDGQEKVILW---HSTAIRSQDGKLNSILYSG--EDVTELKHIEEALRMSEEKYHTLFE 445 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--------DDVLKTEKYPL 261 + +K I + +++ L A ++ E+ P+ Sbjct: 446 TMAQGAIYIDDKGIIIETNPAANTIFGRHESELLGTNIADPVWTYVQENGSIMPPEENPV 505 Query: 262 LTSEESSLPEQEDF----HTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRNHPSLS 312 +T+ ++ + F + ++ + L +N+ + + Sbjct: 506 ITALKTGKAVRNVFMGIKNNLSGEVRWVNLFALPLFRLNQENSYMVYTTFTDISRLKNAR 565 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 EN + + +G + N + Y + + Sbjct: 566 DALTRSENRYRSIFETAASIIISFDQNGIINDCNMRVQEILGYTPAELVG------MSFL 619 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + +R I + + + + + ++ Sbjct: 620 EIVEEPFRHEVRRHIASLNRGEIIYNKDCRMLHKDGK-YRDVMVNCSTLLDENGSVTNAI 678 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE 490 I + + + + ++ + ++GI +++ +G I N+ + K+ Y + Sbjct: 679 CIISDITEQKQTHNALIASEEKIRGMFNGVNEGIIVMDTQGYITEVNQTILKMNNYTSKD 738 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ + F+ YL + SL+ + L + +I L Sbjct: 739 QMIGRHGLEFIAPKDREEARAYLAQADSLN--EVRNLELLCVRPDGTEYFCQISGAVLRD 796 Query: 551 ----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DI+E K+ + +L ++A + + ++HEI PLT I+GF Sbjct: 797 YSGEIQGIIILSADITEHKKLEQQLIMTDRMA-----SVGELASGLAHEINNPLTGIVGF 851 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE+ E I R ++V +LL ++ + E ++ Sbjct: 852 SEL----LLMNELEESIKEDVQTIHREALRAAEVVRNLLTFAR----QQTPTREAGDINL 903 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IHFTPS 721 ++ + + L + I T ++PR++ D+ ++Q+ +NI+ NA + Sbjct: 904 SIQKVLELRKHDHRINNIRCITELDPDLPRVMLDVFQIQQVLINIIINAEFFLRLK---E 960 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 QI I T+ ++ + D G G++ +++ PF G+GTGLGL + Sbjct: 961 HPQITIKTSRR-KGYAVISISDNGPGISPENIKRIFDPFFTTK----EVGKGTGLGLSIC 1015 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +++ + G+ STP G I P D Sbjct: 1016 HGIIEEHHGRISAESTPGNGATFRIELPFAD 1046 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 62/493 (12%), Positives = 140/493 (28%), Gaps = 36/493 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNH--IGDLLKRQN 141 ID G + E + G + +++G + D V + I P + LK Sbjct: 454 IDDKGIIIETNPAANTIFGRHESELLGTNIADPVWTYVQENGSIMPPEENPVITALKTGK 513 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + ++L ALP++ N+E S + + + R R + Sbjct: 514 AVRNVFMGIKNNLSGEVRWVNLFALPLFRLNQENS-YMVYTTFTDISRLKNARDALTRSE 572 Query: 202 KKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 ++ + E + I Q + + S E Sbjct: 573 NRYRSIFETAASIIISFDQNGIINDCNMRVQEILGYTPAELVGMSFLEIVEEPFRHEVRR 632 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSA 313 L E + + TL + + + Sbjct: 633 HIASLNRGEIIYNKDCRMLHKDGKYRDVMVNCSTLLDENGSVTNAICIISDITEQKQTHN 692 Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + V G + N + L + Y S D + GL A Sbjct: 693 ALIASEEKIRGMFNGVNEGIIVMDTQGYITEVNQTILKMNNYTSKDQMIGRHGLE--FIA 750 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 PK + L ++D + L ++ + + E Sbjct: 751 PKDREEAR---AYLAQADSLNEVRNLELLCVRPDGTEYFCQ-ISGAVLRDYSGEIQGIII 806 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + ++++ + ++ S+ E S G+ N ++ + G+ + Sbjct: 807 LSADITEHKKLEQQLIM-TDRMASVGELAS---------GLAHEINNPLTGIVGFSELLL 856 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS 551 + + ++++ ++ L + T + T+E ++L I + +L Sbjct: 857 MNELEES-IKEDVQTIHREALRAAEVVRNLLTFARQ-QTPTREAGDINLSIQKVLELRKH 914 Query: 552 SCYSLTMHDISEW 564 + I+E Sbjct: 915 DHRINNIRCITEL 927 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 57/159 (35%), Gaps = 5/159 (3%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + +++ E + L+ I +++ I+L N+ ++ GY ++I+ Sbjct: 291 IRHRQELARTEIRLKEERDKAQLYLDIAGVIIVVLSENEIVLQINKRGCEILGYEYQEIV 350 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550 + + ++ H + + + E+ + L +EK++ + Sbjct: 351 GRNWFESFVPGYRRLIKHSMYKQIISGKADLPERYMDVVLTKDGQEKVILWHSTAIRSQD 410 Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + D++E K + L +++ + Sbjct: 411 GKLNSILYSGEDVTELKHIEEALRMSEEKYHTLFETMAQ 449 >gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB] gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB] Length = 955 Score = 353 bits (906), Expect = 7e-95, Method: Composition-based stats. Identities = 123/661 (18%), Positives = 234/661 (35%), Gaps = 45/661 (6%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G GIV V +R S + + + + + D + K Sbjct: 153 GVGIVARLPVFLPDGEGQERFWGIVSAVVDAELLYR-NSGLRDDNSPIEIAIRGTDGKGS 211 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNN 295 + L S L G L Sbjct: 212 EGGVFFGRPALFAESPVLAEINLPSGTWQLAALPRGGWPTRADNVWLLRLGMAVVALLVL 271 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPF-FVYSHGNLFYANPSFLLLTK 353 + + A + T++ P + + G + Y N + L Sbjct: 272 GAFLVLWRALNQASQAWARAESSGRQLSATLENTPDVAVQWYDLQGRVIYWNHASEQLYG 331 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + I L L+ + +DN + S + A ++I+ + + Sbjct: 332 WSAEEAIGQR--LDRLIFDREQTDNFTRLLDEVAASGKPIGPAE---YSIRTRDDELRWV 386 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 F + PE ++ + D + ++++ + L T+D + + +G Sbjct: 387 EATMFSIPGESPEKPILVCMDVDITDRKQAEKELADFNRDFEAFLNQTTDFVYFKDAKGC 446 Query: 474 ILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++A++++ G+ +++ K +T V +L+ L KI Sbjct: 447 FRFCSQAMAEISGHASWREMIGKHDREIFPPDTARVYQEEEYRVLTEGRP-LLNKIEPYY 505 Query: 533 TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK------------- 575 + + ++ L DISE + + +L+ + Sbjct: 506 DADGQRGYVQTYKWPLFDEQKRVVGLFGVSRDISEQVRNEEELAQHRLHLEELVAERTEE 565 Query: 576 -----KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + AE + KS+FLA +SHEIRTPL AI G + +I+ P +E + + Sbjct: 566 LAVAKESAEAANVAKSEFLANMSHEIRTPLNAISGMAHLIRRGGLAP----EQMERLDRL 621 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + +L+ +N +LD+SKIE+GK +L P+ + + +++Q A K + + Sbjct: 622 ELASEHLLETINAILDLSKIEAGKFSLEEAPLRVAGILDNVTAILQDRAQAKHLQLSVES 681 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746 +P +L D ++Q LN +SNAI FT SG +I + + + V DTG+ Sbjct: 682 DPTLPPLLGDPVHLQQALLNYMSNAIKFTESG-RITLRARRVDEDADSLLLRFEVEDTGI 740 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L + F Q NS R GTGLGL + + + G S +G+ + Sbjct: 741 GIAPEHLPRLFSAFEQADNSITRRYGGTGLGLAITRKIARLVGGDAGASSVLGQGSTFWL 800 Query: 807 I 807 Sbjct: 801 T 801 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 41/376 (10%), Positives = 95/376 (25%), Gaps = 37/376 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHID--PNNHIGDLLKRQN 141 F + DA G + S+ + + G+ + +MIG ++ L + + Sbjct: 437 FVYFKDAKGCFRFCSQAMAEISGHASWREMIGKHDREIFPPDTARVYQEEEYRVLTEGRP 496 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + +G + P++ + G FG+ + Sbjct: 497 LLNKIEPYYDADG--QRGYVQTYKWPLFDEQKRVVGL--FGVSRDISEQVRNEEELAQHR 552 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------------SSLTE 245 L + +V KE + + M +++ L Sbjct: 553 LHLEELVAERTEELAVAKESAEAANVAKSEFLANMSHEIRTPLNAISGMAHLIRRGGLAP 612 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + D L+ LL + + L D I +++ ++ + L Sbjct: 613 EQMERLDRLELASEHLLETINAIL----DLSKIEAGKFSLEEAPLRVAGILDNVTAILQD 668 Query: 306 RNHPSLSAYFDEGENLTPETVD---KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 R E + P + Y + + S + + + VD+ Sbjct: 669 RAQAKHLQLSVESDPTLPPLLGDPVHLQQALLNYMSNAIKF-TESGRITLRARRVDE--- 724 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 +LL ++ D + A + L + Sbjct: 725 --DADSLLLRFEVEDTGIGIAPEHLPRLFSAFE-QADNSITRRYGGTGLGLAITRKIARL 781 Query: 423 QFPENMPQNGIEPEDV 438 + + + Sbjct: 782 VGGDAGASSVLGQGST 797 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 47/419 (11%), Positives = 106/419 (25%), Gaps = 47/419 (11%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148 D G + + + G A + IG RL + + ++ LL GK Sbjct: 314 DLQGRVIYWNHASEQLYGWSAEEAIGQRLDRLI--FDREQTDNFTRLLDEVAA-SGKPIG 370 Query: 149 -----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +V + ++P S + + ++ Sbjct: 371 PAEYSIRTRDDELRWVEATMFSIPGESPEKPIL----VCMDVDITDRKQAEKELADFNRD 426 Query: 204 FSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--KTE 257 F + K + H + + D + E Sbjct: 427 FEAFLNQTTDFVYFKDAKGCFRFCSQAMAEISGHASWREMIGKHDREIFPPDTARVYQEE 486 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 +Y +LT L + E ++ + + + Y L + K S +E Sbjct: 487 EYRVLTEGRPLLNKIEPYYDADGQRGYVQTYKWPLFDEQKRVVGLFGVSRDISEQVRNEE 546 Query: 318 GENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 +++ + S A FL ++ + G++ L+ Sbjct: 547 ELAQHRLHLEELVAERTEELAVAKESAEAANVAKSEFLANMSHEIRTPLNAISGMAHLIR 606 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L+ + L + + + + ++ P A Sbjct: 607 RGGLAPEQMERLDRLELASEHLLETINAILDLSKIEAGKFSLEEAPLRVA-------GIL 659 Query: 432 GIEPEDVDTRINKRKMEIEVM--------------QLCSILEATSDGIAIINREGIILS 476 + R + +++ V ++L S+ I G I Sbjct: 660 DNVTAILQDRAQAKHLQLSVESDPTLPPLLGDPVHLQQALLNYMSNAI-KFTESGRITL 717 >gi|254445464|ref|ZP_05058940.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198259772|gb|EDY84080.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1321 Score = 353 bits (906), Expect = 8e-95, Method: Composition-based stats. Identities = 122/566 (21%), Positives = 223/566 (39%), Gaps = 40/566 (7%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + Q+++ R + + +LT T+ K V G Sbjct: 623 APNDLVEVVGLPQQSSTGLYLRNSKIRKTGATEPLQAQVLDLTENTLAKNLDGHLVKLEG 682 Query: 340 NLF----YANPSFLLLTK-YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 L Y N L++++ S++ I S + ++ V D Sbjct: 683 KLINLAYYQNEVHLIVSQNGASMEAIGKLSLSSPEFQNLQPGAIISLVGVYYLIYDEHSS 742 Query: 395 AASARLHTIQWNR----------------ENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + Q + + + + + + E + Sbjct: 743 PEKASILLRQPSDLQIIENAPWWTPKKTFGLIVLLVLAAVAGGSWTILLRNRVASQTEVI 802 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 ++ + ++ + SD I I+ +G LS N+A L GY ED Sbjct: 803 REKMEHEALLEIQH--RQLVNSASDFIFTIDFQGRFLSYNKAGEDLTGYSSEDFKAIDIY 860 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555 +++ ++ + L + K+ L + + + S Sbjct: 861 TIMDERHCLLVKNLLRR---RRSIPNISLEMQIRRKDGTLRWVEVSAGFIRNESEAVSAF 917 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HDI K+ + L+ AK+ AE+ + KS FLA +SHE+RTP+ IIG + Sbjct: 918 GVIHDIEVRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRTPMNGIIGMT----GLLL 973 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + I S +L ++ND+LD+SK E+GK+ P +L +AV++ ++L+ Sbjct: 974 ELELTRDARNFGETIRDSAASLLVLLNDILDLSKAEAGKLTFDPHPFNLRDAVNQTVTLL 1033 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + AN K + + + +P +L D ++Q+ LN++ NAI FT SG + +S + S+ Sbjct: 1034 ETTANSKNLELLSEIPEKLPDSLLGDAGRLRQVLLNLIGNAIKFTESG-HVKVSVSKISD 1092 Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + ++ DTG+G++ K + F Q NS R GTGLGL ++K +V G Sbjct: 1093 DNEKEIYRFQIMDTGIGISEKAKPKLFQSFEQADNSLARRFGGTGLGLKISKEIVTLMGG 1152 Query: 791 KFYIFSTPAKGTLIEIIFPL-YDTSH 815 + + ST +G+ PL +TS Sbjct: 1153 EIGMESTEGEGSTFWFTLPLKKETSQ 1178 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 27/264 (10%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F + ID G ++ G + + D+ I+ + +LL+R+ + Sbjct: 826 FIFTIDFQGRFLSYNKAGEDLTGYSSEDF---KAIDIYTIMDERHCLLVKNLLRRRRSIP 882 Query: 145 GKTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + +GT ++++A I + + S FG++H V R Sbjct: 883 NISLEMQIRRKDGTLR--WVEVSAGFIRNESEAVS---AFGVIHDIEVRKKTEQNLTRAK 937 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + K + + P + L E +D E Sbjct: 938 EAAEENTRAKSAFLATMSHELR-------TPMNGIIGMTGLLLELELTRDARNFGETIRD 990 Query: 262 LTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + L + D + T + L++ ++ L + Sbjct: 991 SAASLLVLLNDILDLSKAEAGKLTFDPHPFNLRDAVNQTVTLLETT-------ANSKNLE 1043 Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344 L E +K P G L Sbjct: 1044 LLSEIPEKLPDSLL-GDAGRLRQV 1066 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 60/456 (13%), Positives = 111/456 (24%), Gaps = 69/456 (15%) Query: 62 VSNTNYLDSENT-------FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 N LD +T F R +R + + + Sbjct: 513 PPNEKLLDVGSTVKLRGVLFTESNDRRQLRSILFVVPEKRF-------AEVKIPSSETPF 565 Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWY----GKTTLWPIEGTNLYVP---------- 160 + L +++ P +H + T +T L V Sbjct: 566 DLPLEELASFKRYQPLDHAKKFRRTSGTVVHYKDNRTLFLKDGPDVLRVLSHSDIKLAPN 625 Query: 161 --IDLAALPIYSRNREF--------SGFRGFGIVHVNRVDNDPRALGKR-----LDKKFS 205 +++ LP S + +G V + + A L+ K Sbjct: 626 DLVEVVGLPQQSSTGLYLRNSKIRKTGATEPLQAQVLDLTENTLAKNLDGHLVKLEGKLI 685 Query: 206 HLHEIKKGHSSVEK------EKYDIFSQQSPPPHLRMKNKVSSL---------TEYYAHK 250 +L + + E S SP + SL K Sbjct: 686 NLAYYQNEVHLIVSQNGASMEAIGKLSLSSPEFQNLQPGAIISLVGVYYLIYDEHSSPEK 745 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 +L + L E + + + + G+ + + Sbjct: 746 ASILLRQPSDLQIIENAPWWTPKKTFGLIVLLVLAAVAGGSWTILLRNRVASQTEVIREK 805 Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLS 367 + + V+ F + G N + LT Y S D I+I + Sbjct: 806 MEHEALLEIQH-RQLVNSASDFIFTIDFQGRFLSYNKAGEDLTGYSSEDFKAIDIYTIMD 864 Query: 368 TL-------LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L + S N + + R D T I+ E A I + Sbjct: 865 ERHCLLVKNLLRRRRSIPNISLEMQIRRKDGTLRWVEVSAGFIRNESEAVSAFGVIHDIE 924 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + E E + +TR + +L + Sbjct: 925 VRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRT 960 >gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella australiensis 50-1 BON] Length = 430 Score = 353 bits (906), Expect = 8e-95, Method: Composition-based stats. Identities = 92/402 (22%), Positives = 175/402 (43%), Gaps = 23/402 (5%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 ++ + IE D +++M +L +I + G+ +N I + Sbjct: 47 LPISSSQSLQLLIYAIERWHKDIGHRQQEMLENNERLRAIFANATVGLIAVNERLHIEAV 106 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N K+F E + LE + + ++ + + ST E Sbjct: 107 NHMACKMFDIDAEGAKGR---YILESIRNPHLESLVRYVVVNGEPLSSDIEL--STGNEL 161 Query: 538 LLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 +L + I K+ + +++ DI+E K+ K++ +A +SHEI Sbjct: 162 ILRVSISPLKVDNRVNGAVISLEDITELKRL--------------DQVKAELVANMSHEI 207 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 +TPLT+I GF+E + + + ID + + ++ND L +S++ES N Sbjct: 208 KTPLTSIKGFAETLLDGAMD--DRETCRRFLTIIDSEADRMSRLINDSLTLSRLESQDRN 265 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + EP++L E + + +V A K I + +I + + Q+ LN++ NAI Sbjct: 266 ISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDMKIDGNEDRMHQLMLNLIDNAI 325 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +TPSGG++ I+ E+ + V+DTG+G+ + + + F ++ + GTGL Sbjct: 326 KYTPSGGKVTITIK-DEGEDAFISVKDTGIGIAKEHMPRLFERFYRVDKGRSRNMGGTGL 384 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 GL + K +V + G + S +GT + P + ++HP D Sbjct: 385 GLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPKHYSAHPSD 426 >gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella bacilliformis KC583] Length = 773 Score = 353 bits (905), Expect = 8e-95, Method: Composition-based stats. Identities = 124/509 (24%), Positives = 225/509 (44%), Gaps = 53/509 (10%) Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G + Y + + + Y D + ++ ++++ ++ + + +M Sbjct: 282 GRI-YWSRAMYEMLGYVPQDALLSISQITAIINSTDINFFDLAQELM----SGEKKHIDI 336 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + ++ + + M + P GI + + + +++ + Sbjct: 337 NV-PMRHADGHHVWMRIRAEVTEEEEP---HLVGISFDISEQHQFVEQTAQADLRIRDAI 392 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E S+ + + EG ++ +N + P + + + ++ ++E Sbjct: 393 ENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ----SGIQRATVTAMARPAISEYFL 448 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK-------- 570 + T ++ T + L + ++ DISE KQ++ K Sbjct: 449 KEDDGTGNLTSIRQTADGFWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRL 505 Query: 571 ---------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 L K+ AE + KS+FLA +SHE+RTPL AI Sbjct: 506 FSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPLNAI 565 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +GFS+++ FGPLG+ RY EY I SG +L ++ND+LD+SKIE+G+ L + V Sbjct: 566 LGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNVD 625 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L+ +SEAI + A EK+I I + A + D R+++QI LN++SNA+ FTPSGG Sbjct: 626 LEPIISEAIRTLTPQAQEKKISITANIAPKL-HAELDCRAMRQIFLNLISNAVKFTPSGG 684 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I I +I +++DTGVG+ ++K KPF Q+ N G+GLGL ++++ Sbjct: 685 SIDI-CAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPFEQVENQFTKTHTGSGLGLAISRS 743 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +++ + GK I S GT + I P+ Sbjct: 744 LLELHKGKLEIASEEENGTTVTITIPIKQ 772 >gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 826 Score = 353 bits (905), Expect = 8e-95, Method: Composition-based stats. Identities = 110/558 (19%), Positives = 210/558 (37%), Gaps = 64/558 (11%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD----IEIAGGL 366 + E V P+ G + F + T + Sbjct: 137 AQREAVMRMRDSGEIVLAGPVNLVQGGTGFII----RFPVFTGEGEDRAFWGMVAAVIDA 192 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTC---------------------------IAASAR 399 L L + + L D T A Sbjct: 193 DALYQGAGLHQADLPVEIALSGRDGTGHQGGVFYGDPAIHDYGPMVMDVILPTGTWELAA 252 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-------EDVDTRINKRKMEI--- 449 + W +E +P R ++++E Sbjct: 253 IPRGGWPKEPGNLWKLRLVLIVAGILIIVPTFMACRLSAVRRSTIKTLRKREQELERHQV 312 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPS 507 E+ QL ++ + SD I + + + N A +++ GY ++D + K L + P Sbjct: 313 ELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTIDDAIGKRPGDLLNGPETDPE 372 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + I + L + L TK+ + + + + + D++ Sbjct: 373 TIRDIAEHIARGER---LHREILNYTKDGDTIWVDTNLVPVLNENGDMRMVIGIERDVTS 429 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ +L+ AK+ AE+ K++FLA +SHEIRTP+ IIG ++++ Sbjct: 430 QKRNAVELAEAKRAAEEADRTKTEFLANMSHEIRTPMNGIIGMADLLSETAL----PEEQ 485 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y I S +L I+ND+LD++++ESGK++L L+ + A+ +++ A EK Sbjct: 486 EQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLERCIESAVDILRPVAREKG 545 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRV 741 + + ++A ++P+ + AD V+QI +N++ NA+ FT SG + + + + + V Sbjct: 546 LTLNVNYATDLPKSVRADDGRVRQILVNLVGNAVKFTASGRVDVRVLRAQSDPYRLTIDV 605 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D+G+GM+ +L F Q + GTGLGL +++ + G + S P +G Sbjct: 606 QDSGIGMSQAQLNNIFDRFSQADAATTRSFGGTGLGLTISRLLAQQMQGDITVHSEPGQG 665 Query: 802 TLIEIIF----PLYDTSH 815 + + PL Sbjct: 666 SCFSLYIQCDAPLGQPEQ 683 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 6/105 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147 + +++ + G IG R D+ + DP I + + R + + Sbjct: 332 GPDLRVFWVNDAFTRMTGYTIDDAIGKRPGDLLNGPETDPETIRDIAEHIARGERLHREI 391 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + +G + +D +P+ + N + GI Sbjct: 392 LNYTKDGDT--IWVDTNLVPVLNENGDMRMV--IGIERDVTSQKR 432 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 37/321 (11%), Positives = 78/321 (24%), Gaps = 23/321 (7%) Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 + + + GT + P+++ E F G Sbjct: 135 NDAQREAVMRMRDSGEIVLAGPVNLVQGGTGFIIRF-----PVFTGEGEDRAFWG----- 184 Query: 186 VNRVDNDPRALGK-RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + D AL + + EI + +F P H + + Sbjct: 185 MVAAVIDADALYQGAGLHQADLPVEIALSGRDGTGHQGGVFYG-DPAIHDYGPMVMDVIL 243 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + +P L I F + ++ + Sbjct: 244 PTGTWELAAIPRGGWPKEPGNLWKL----RLVLIVAGILIIVPTFMACRLSAVRRSTIKT 299 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363 R + +F+ N +F +T Y D I Sbjct: 300 LRKREQELERHQVELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTIDDAIGKR 359 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G LL+ P+ D I+ + + + + + + + + N+ Sbjct: 360 PG--DLLNGPET-DPETIRDIAEHIARGERLHRE--ILNYTKDGDTI-WVDTNLVPVLNE 413 Query: 424 FPENMPQNGIEPEDVDTRINK 444 + GIE + + N Sbjct: 414 NGDMRMVIGIERDVTSQKRNA 434 >gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 484 Score = 353 bits (905), Expect = 8e-95, Method: Composition-based stats. Identities = 99/490 (20%), Positives = 189/490 (38%), Gaps = 42/490 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG---------LSTLLDAPKLSDNNAIKP 383 + G + N + +L + + ++ L + Sbjct: 22 VLLRPDGVVEDWNSAAEILLGFTREEAVQQPLADLIELTDSEHRALTLDFGDCGRSLSTQ 81 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + ++ + Sbjct: 82 GLCRSKKGQSFPVEVVCSPVDVQGDSLVVTLIRDV------------------------- 116 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +++ + +LE+ D I I+ + G I+ N LFGY ++++ + + + + Sbjct: 117 -SELKRAEQKFRGLLESAPDAIVIVKQGGRIVLVNSQAESLFGYHRDEMIGQNVEILMPE 175 Query: 504 NTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MH 559 + + + G K + I + L ++ + Sbjct: 176 RYRGQHIGHRDGFFKDPRVRPMGMGLELFGLRKGGIEFPIEISLSPLETEEGILVSSAIR 235 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + L + + K FLA +SHE+RTPL AIIGF+ + GPL Sbjct: 236 DITERKRFERALQDKNQELATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPL- 294 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + + S +L ++NDLLD++KI++GK+ L E ++L++ + E L A Sbjct: 295 NDDQKKQLGTVRSSAQHLLSLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQA 354 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + + + D R++ QI +N++SN + FT GG + ++ + + V + Sbjct: 355 REKALELGLQLPDQPVNLETDRRALSQIVMNLISNGLKFTHEGG-VYVTLVRPNPQSVHV 413 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG G+ E +PF + S R EGTGLGL L++ + + G + + A Sbjct: 414 CVRDTGPGIDTSAQENLFQPFSRGVLS-SRRTEGTGLGLYLSQKLANQLGGNIQLQRSDA 472 Query: 800 KGTLIEIIFP 809 G+ + P Sbjct: 473 SGSEFLLSLP 482 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 8/141 (5%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + +E+E + + +D + ++ +G++ N A L G+ E+ +++P +E Sbjct: 2 EHQTVEMETATMRP---SPADAVVLLRPDGVVEDWNSAAEILLGFTREEAVQQPLADLIE 58 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHD 560 L D ++L L +K+ + + + + S + D Sbjct: 59 LTDSEHRALTLDF---GDCGRSLSTQGLCRSKKGQSFPVEVVCSPVDVQGDSLVVTLIRD 115 Query: 561 ISEWKQEKNKLSHAKKIAEKE 581 +SE K+ + K + A Sbjct: 116 VSELKRAEQKFRGLLESAPDA 136 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 20/251 (7%), Positives = 60/251 (23%), Gaps = 19/251 (7%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP- 151 G + ++ + G + +MIG + + P + G + ++ ++ + P Sbjct: 144 GRIVLVNSQAESLFGYHRDEMIGQN------VEILMPERYRGQHIGHRDGFFKDPRVRPM 197 Query: 152 --------IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + PI+++ P+ + + + +++ Sbjct: 198 GMGLELFGLRKGGIEFPIEISLSPLETEEGILV----SSAIRDITERKRFERALQDKNQE 253 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + ++ K + + + + K L Sbjct: 254 LATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPLNDDQKKQLGTVRSSAQHLL 313 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S + L + L + L +F + L + Sbjct: 314 SLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQAREKALELGLQLPDQPVNLE 373 Query: 324 ETVDKCPIPFF 334 Sbjct: 374 TDRRALSQIVM 384 >gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus vortex V453] Length = 609 Score = 353 bits (905), Expect = 8e-95, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 155/373 (41%), Gaps = 24/373 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L SIL SDG+ + G ++ NR ++ G E++ Sbjct: 250 REALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSL 309 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSS--CYSLT 557 L + + + + E + + Sbjct: 310 LGLEESES-----EALARSEGHDSKLLEIVPREGSEPFMMRVTFTPIHRREIGITGTIAV 364 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D++E ++ + + + +F+A VSHE+RTPLT I ++E +++ Sbjct: 365 LQDVTEQEKLE--------------ASRREFVANVSHELRTPLTTIKSYTEALEDGAL-- 408 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + I ++ +V DLL +S+++S + LH EP + E + + Sbjct: 409 EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSF 468 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K I + + D + Q+ N++SNA+ +TP GG I + + T + Sbjct: 469 QMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGML 528 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 L V+DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S Sbjct: 529 SLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSE 588 Query: 798 PAKGTLIEIIFPL 810 KGT + PL Sbjct: 589 LEKGTTVTFTLPL 601 Score = 45.0 bits (105), Expect = 0.051, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 7/147 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ + +G ++ G D+ +L ++ + + + Sbjct: 277 TDEAGRVILMNRRAGEMLGVEGEELAGH---DIVSLLGLEESESEALA-RSEGHDSKLLE 332 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + P EG+ + + PI+ R +G ++ A + SH Sbjct: 333 IVPREGS-EPFMMRVTFTPIHRREIGITGT--IAVLQDVTEQEKLEASRREFVANVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235 E + + + R Sbjct: 390 RTPLTTIKSYTEALEDGALEDKQMGPR 416 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 12/151 (7%), Positives = 32/151 (21%), Gaps = 16/151 (10%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 + +E + + G + N + + +++ Sbjct: 246 TSRLREALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEG-EELAGH 304 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 +S L + L RS+ L + M + Sbjct: 305 DIVSLL-------GLEESESEALARSEGHDSKL---LEIVPREGSEPFMMRVTFTPIHRR 354 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + K+E + Sbjct: 355 EIGITGTIAVLQDVTEQ----EKLEASRREF 381 >gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula baltica WH47] Length = 843 Score = 353 bits (905), Expect = 8e-95, Method: Composition-based stats. Identities = 99/511 (19%), Positives = 199/511 (38%), Gaps = 42/511 (8%) Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G +AN S+L + AG L P+++ + ++ + + Sbjct: 30 DGRRVFANDSYLKWRGVTWQEL---AGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVE 86 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + + ++ + + + + + + ++ + E L ++ Sbjct: 87 ----SAKLADDSIGWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 142 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 L D I + + + + A++ FG V+++ + + Sbjct: 143 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRV 202 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + + + L + DI++ K+ + L Sbjct: 203 IETGEALVDRVERET-WPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALH 261 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A ++A+ + KS+FLA +SHEIRTP+ A+IG ++++ + +P +Y I Sbjct: 262 EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL----DPDQQDYVQIIQE 317 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S N +L ++ND+LD SKIE+ ++ L P SL + + + A+EK + ++ + Sbjct: 318 SSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISP 377 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI----------------------IIST 729 +P ++ D V+Q+ N++ NAI FT GG S Sbjct: 378 ELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERADRDLAATHSGRESP 437 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ L V D+G+G+ + + + PF Q S R GTGLGL +++ +V+ Sbjct: 438 ERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMG 497 Query: 790 GKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818 G+ ++ S GT P+ S P++ Sbjct: 498 GELHLQSEVGVGTTFSFQLKMPVCPASMPNE 528 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 27/259 (10%), Positives = 64/259 (24%), Gaps = 23/259 (8%) Query: 90 DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147 D +S + G ++ G D+ H + +++ + Sbjct: 154 DIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETGEALVDRV 213 Query: 148 TL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 WP +P+ + E G FGI A + Sbjct: 214 ERETWP---DREDTWCMTTKMPLRNDTGEIIGT--FGISRDITDLKRSEAALHEAVRMAD 268 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + K + + P + L++ D + ++ Sbjct: 269 AANRSKSEFLANMSHEIR-------TPMNALIGMADLLSQTKLDPDQQDYVQIIQESSNG 321 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 L D + + + + + K L + + + +++PE Sbjct: 322 --LLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISPEL 379 Query: 326 VDKCPIPFFVYSHGNLFYA 344 D+ + G + Sbjct: 380 PDRL-----IGDPGRVRQV 393 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 20/245 (8%), Positives = 63/245 (25%), Gaps = 7/245 (2%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149 A G ++ K G ++ G D+ +++ + + + Sbjct: 29 ADGRRVFANDSYLKWRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVESA 88 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + I+ ++ + G + F V + + L K Sbjct: 89 KLADDSIG--WIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTLLANI 146 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY---AHKDDVLKTEKYPLLTSE 265 ++ + + ++V T+ + + ++ ++ + Sbjct: 147 PDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETG 206 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 E+ + E + L+N++ E + + + Sbjct: 207 EALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALHEAVRM 266 Query: 326 VDKCP 330 D Sbjct: 267 ADAAN 271 >gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid [Agrobacterium sp. H13-3] Length = 1223 Score = 353 bits (905), Expect = 8e-95, Method: Composition-based stats. Identities = 138/773 (17%), Positives = 259/773 (33%), Gaps = 59/773 (7%) Query: 90 DAHGYLKEISEELPKTI---------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 D L + + G ++ + L++Q Sbjct: 149 DRENRLVYCNARFVEFYSDFNLQLKPGTRLETLMEAVYFSSGYRSVKSDDPDYQAWLQKQ 208 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + L +E + + + N G R V + + R Sbjct: 209 LRDFSLPYLERVEQFADGRWVRMVNKRL--ENGMLVGLR--VDVTEFKAHETLLSKQIRE 264 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLT-EYYAHKDDVLKT 256 E + + + + R + + + E + + + Sbjct: 265 TWLLRAALEQLPVGVFLRDQDRRLTFANAAFEKFRGGSLADYLGKTECEMFPEEGAEFQR 324 Query: 257 EKYPLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-------N 307 E +L + E+ + T+ T + Sbjct: 325 ENEHILQTGEAIEKTGTIPLSDGGAVPVITRLGRVTTPDDEYYLVGSVTDVSLLKERENA 384 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-------- 358 + A + + P+ + + + Y NP F L + Sbjct: 385 LIAAQAQAEALHRQFETVLHALPVGVLLLNADLVIEYVNPCFDTLWGEIGGEKSLVGKSY 444 Query: 359 -DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + A S L D + + + R+DR ++ ++ Sbjct: 445 REFMEANFESGLYD----YGDIPFEELYNQRADRLLNDKVFTPREVRSKSGKVTVISKTR 500 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + D + K ++E + A + G+ ++ +G I+ + Sbjct: 501 LDGGKILSTYADVTDVRMRDAEISEAKAELERVGEYMQGATRAMAQGLVLV-EQGTIIMS 559 Query: 478 NRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITL 530 N AV+++F P + + ++ F E + L Sbjct: 560 NEAVARMFDVPPQLLEKGCNWSGFFAHCAGRGDFGTKEEAAATLTAWREHIAANRPFSWL 619 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + L+L + + + + D++E K + +L AE KS+FLA Sbjct: 620 IHIAGKTWLNLEAT---NSSGNYWLIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLA 676 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ ++G +E++ R + + I +SGN +L I+ND+LD SKI Sbjct: 677 NMSHEIRTPMNGVLGMAELLAKSNLDT----RQKTFTDIIVKSGNALLTIINDILDFSKI 732 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIAL 709 E+G+M L P EAV + +SL+ A EK I + ++ +++ D +Q+ Sbjct: 733 EAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVT 792 Query: 710 NILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++ NA+ FT G I +S E + LRV D+G+G+ +LE F Q+ S Sbjct: 793 NLVGNAVKFTEMGHVLIELSAQSAEASETILSLRVEDSGIGIPADKLETIFDKFSQVDGS 852 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 R EGTGLGL + +V G + S KG+ E+ P + T D Sbjct: 853 ATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEVNIPFHVTEKRRDA 905 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 25/283 (8%), Positives = 77/283 (27%), Gaps = 38/283 (13%) Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + +P + N ++ + + ++ + Sbjct: 13 GAIAALDLPACIKDSELRYLMVNAAYGRVMGRPPAAFTGHTSLALSADIRDAEREDRERR 72 Query: 383 PVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 ++ + + +L ++ ++ F FE+ + + G Sbjct: 73 SLVFATDEVISCHGAASSGPYKLRCERFTGDDGSLFLFEVFEEVPSVVKGVSDGGSADLL 132 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKP 496 D+ +++ GI I +RE ++ N + + + ++ Sbjct: 133 FDSG---------------VIDLIDAGIVIYDRENRLVYCNARFVEFYSDFNLQLKPGTR 177 Query: 497 FTVFLEQ-----------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 +E + +L + L LE+ + + + + + + Sbjct: 178 LETLMEAVYFSSGYRSVKSDDPDYQAWLQKQLRDFSLPYLER--VEQFADGRWVRM---V 232 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 K + D++E+K + LS + + Sbjct: 233 NKRLENGMLVGLRVDVTEFKAHETLLSKQIRETWLLRAALEQL 275 >gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 815 Score = 353 bits (905), Expect = 9e-95, Method: Composition-based stats. Identities = 132/508 (25%), Positives = 230/508 (45%), Gaps = 25/508 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362 S R + ++E V++ P+ + G + Y NP+F +T Y + + Sbjct: 318 SLRRSERRAVLWEEEARKLFRAVEQSPVSVLISDAQGLIEYINPAFSAMTGYHRDEVL-- 375 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G S + + + S + + + Sbjct: 376 --GHSPRMLRSDQTPPEVFADLWASISAGQEWRGEIVNQR---KDGSVYWESMTVAPVKD 430 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + + R + +E+E L I +T D IA+++ +G N A+ Sbjct: 431 GDGKVDSFIAFKEDVTEIRSLRLALELEHANLRRIFASTKDLIALVSTDGRFEYANPALV 490 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 FG ++++ I +L T + S K Sbjct: 491 DTFG---------------PVMGVRTIDYFQPAIANLGDDNTATRGEWVSDLNGKTYEFS 535 Query: 543 IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I P L +HDI+ KQ + ++ A++ AE + K++FLA +SHE+RTPL Sbjct: 536 ITPVDTPHGEMSALLALHDITTRKQAELAMAEAREAAELSNRAKTEFLATMSHELRTPLN 595 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIGFSE+I+N+ GP+ +Y +YA+ I+ SG +L ++ND+LD++++E G+ L Sbjct: 596 AIIGFSEIIENELLGPVETKQYRDYAHDINESGRHLLTLINDILDVARLEVGRFALMESE 655 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + + + + ++ LV A + I + +P ++ D R +KQ NILSNA+ FT + Sbjct: 656 MDVGQTIRASVQLVGERAKAAGLRIGEQIPDGLPWLMGDERRIKQTIANILSNAVKFTSA 715 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G++ + T T + + V DTG+G+ ++ K M PFGQ +S R +G GLGLPLA Sbjct: 716 DGRVTV-TAKTDENGLDIVVSDTGIGIHADDMTKIMAPFGQAESSLSRRFDGAGLGLPLA 774 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +D + G I STP +GT++ + FP Sbjct: 775 RRFMDMHGGTLSISSTPGQGTVVNLHFP 802 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 57/180 (31%), Gaps = 9/180 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTWYGK 146 DA G ++ I+ G + +++G + P DL + W G+ Sbjct: 351 DAQGLIEYINPAFSAMTGYHRDEVLGHSPRML--RSDQTPPEVFADLWASISAGQEWRGE 408 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKR-LDKKF 204 +G+ + + +A P+ + + F F V R L L + F Sbjct: 409 IVNQRKDGSVYWESMTVA--PVKDGDGKVDSFIAFKEDVTEIRSLRLALELEHANLRRIF 466 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + ++ S+ + +Y + + + A+ D + ++ Sbjct: 467 ASTKDLIALVSTDGRFEYANPALVDTFGPVMGVRTIDYFQPAIANLGDDNTATRGEWVSD 526 >gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium] Length = 1248 Score = 353 bits (905), Expect = 9e-95, Method: Composition-based stats. Identities = 119/640 (18%), Positives = 231/640 (36%), Gaps = 49/640 (7%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + S I H ++E + P + K+ L ++ + Sbjct: 293 ASRISSGVAITDRHGTIEWINSAFVALTGWPEDKVLGRKLGELLAQEVSAPTTVRELEDH 352 Query: 261 LLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315 L L + + +Y + + + + +Y+ + Sbjct: 353 LARGVPFRLSYEAARQGGQLITRYWGEIDAIQMLDETGGRSQYVCLFNDITKRKAQEHVR 412 Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 D+ + P+ FV + N+ N + K + + + Sbjct: 413 DQEREFLEALLGNLPVSLFVLDPVNLNVVAINRYTEIEFKLQRDQVVGKSI--------- 463 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-----RENSLAMTFIPFEKANQFPENM 428 A+ +L ++ A TI+ + + F + Sbjct: 464 ----TQALGESVLKLTEGPMQEALETGQTIEHDFEWQNASQQRIVNARHFALRHSNGRPR 519 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487 + + R ++ +E + ++E+ DG+ + + L + L+G Sbjct: 520 LLISLVRDITSARQSQADLEESERRFRELVESMDDGVYVASEHRANYLYLSHRTQDLWGV 579 Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 EDI P + ++ + D K + L R Sbjct: 580 SAEDIQAHPARLKSLVLPEDQHLLAEQ-EALEDQDQPTDTLLRLQHPDKGLRFLRHRTRA 638 Query: 546 KKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 ++LP + D+++ + +L A+ +AE S KS F+A +SHEIRTP+ I+ Sbjct: 639 RRLPDGQSRIYGLVSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGIL 698 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +E++ N + +A + RSG +L+I+ND+LD +KIE+G++ L L Sbjct: 699 GMTELLLGTPL----NDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVL 754 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723 V + + L+ A+EK + + +P + D ++QI N+++NAI FT G Sbjct: 755 RTLVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHG- 813 Query: 724 QIIISTTHTSNE-------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +I++ E+ VRDTG+G+ + + F Q R Sbjct: 814 EIVVDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANGGMARR 873 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL ++K +V+ G+ + S P G+ P+ Sbjct: 874 YGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVPV 913 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 45/382 (11%), Positives = 108/382 (28%), Gaps = 24/382 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146 D HG ++ I+ G K++G +L ++ P + D L R + Sbjct: 303 TDRHGTIEWINSAFVALTGWPEDKVLGRKLGELLAQEVSAPTTVRELEDHLARGVPFR-L 361 Query: 147 TTLWPIEGTNL--YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKK 203 + +G L ++ A+ + S + + + + + Sbjct: 362 SYEAARQGGQLITRYWGEIDAIQMLDETGGRSQY--VCLFNDITKRKAQEHVRDQEREFL 419 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + L + ++ ++ + +++V + A + VLK + P+ Sbjct: 420 EALLGNLPVSLFVLDPVNLNVVAINRYTEIEFKLQRDQVVGKSITQALGESVLKLTEGPM 479 Query: 262 LTSEESSLPEQEDFHTINLN-QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----FD 316 + E+ + DF N + Q L++++ +S + + + Sbjct: 480 QEALETGQTIEHDFEWQNASQQRIVNARHFALRHSNGRPRLLISLVRDITSARQSQADLE 539 Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E E E V+ +V S Y + L + D L +L+ Sbjct: 540 ESERRFRELVESMDDGVYVASEHRANYLYLSHRTQDLWGVSAEDIQAHPARLKSLVLPED 599 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + L + L G+ Sbjct: 600 QHLLAEQEAL-----EDQDQPTDTLLRLQHPD--KGLRFLRHRTRARRLPDGQSRIYGLV 652 Query: 435 PEDVDTRINKRKMEIEVMQLCS 456 + D +++ + Sbjct: 653 SDVTDEHGQALELQRARDLAEA 674 >gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 847 Score = 353 bits (905), Expect = 9e-95, Method: Composition-based stats. Identities = 118/569 (20%), Positives = 210/569 (36%), Gaps = 30/569 (5%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + E + ++ P + + + N + + Sbjct: 145 REPELIEAIAAQHHVDPTHLHALSAVYTPRSPEIIEAAKANLRASAMLMGEILERRMVEE 204 Query: 314 YFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + PI + G+ N + L +T + + I + Sbjct: 205 ELRASKEKYRAVFRTNPILTLIASLDDGHCLEVNEALLQMTGFSREELIGNRIQDLGIWT 264 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P SD L++ +T + I+ + F + + Sbjct: 265 DPSASDA-------LHQQLKTQGHFEMKEIQIRSKFSEHKTLLFSAETRELHGRPCIIAA 317 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + + +R + + +L T+DGI N + + + ++ GY + Sbjct: 318 G--QDITERNERERLLRESEERYALVLNGTNDGIWDWNLRTMQVYFSPRWKEIIGYRDAE 375 Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 I + + + + + E K+ + L Sbjct: 376 IRNDLEEWKSRIHPEEFDNVMATHERFFRAEDP-VFEVEYRLRHKDGSYRWILGRGACLR 434 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 S + + D++ KQ + +LS AK+ AE+ S KS+FLA +SHEIRTPL+ ++G Sbjct: 435 DQSGKPYRMAGSHTDMTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLG 494 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+ P E+ SG +L I+ND+LD+SKIE+G+ NL + SL Sbjct: 495 MTELAMMNELTP----EVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLR 550 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 E I + + A K + I + P +L D ++QI N++ NA+ FT G Sbjct: 551 ELADSTIKSLAVSAKAKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTERG-T 609 Query: 725 IIISTTHT----SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + +S T ++ LR V+DTG+G+ LE K F Q S GTGLGL Sbjct: 610 VTVSMTADAVDAPAGKITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHATYGGTGLGL 669 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++K +V+ G+ + S G+ Sbjct: 670 TISKELVEMMGGRIWAESRMGHGSAFHFT 698 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 25/266 (9%), Positives = 73/266 (27%), Gaps = 23/266 (8%) Query: 84 RFTWNIDA---------HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134 R + + G+ E++E L + G ++IG R+ D+ ++ + Sbjct: 214 RAVFRTNPILTLIASLDDGHCLEVNEALLQMTGFSREELIGNRIQDLGIWTDPSASDALH 273 Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDP 193 LK Q + K + + + + +A RE G N+ Sbjct: 274 QQLKTQGHFEMKEIQIRSKFS-EHKTLLFSA-----ETRELHGRPCIIAAGQDITERNER 327 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYY----- 247 L + +++++ + ++ + ++ Sbjct: 328 ERLLRESEERYALVLNGTNDGIWDWNLRTMQVYFSPRWKEIIGYRDAEIRNDLEEWKSRI 387 Query: 248 -AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + D + +E+ + + + L++ S + + Sbjct: 388 HPEEFDNVMATHERFFRAEDPVFEVEYRLRHKDGSYRWILGRGACLRDQSGKPYRMAGSH 447 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIP 332 + + + E ++ Sbjct: 448 TDMTRRKQIEAELSKAKEDAERASKA 473 >gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 1309 Score = 353 bits (905), Expect = 1e-94, Method: Composition-based stats. Identities = 128/732 (17%), Positives = 263/732 (35%), Gaps = 37/732 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150 G+LK+++ + +G ++ ++ + D + L + T Sbjct: 183 DGFLKKVNPAFHQVLGWDEHYLLSHSFYELVHPDDLIDTQREVAQLANGKKTINFVHRFR 242 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 ++GT Y+ P +G+ FGI + + KF E Sbjct: 243 CVDGTYCYLQWVATPEPA-------TGYV-FGIARNVTEEKQRELRLNHSEAKFRTFFEN 294 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEE 266 +G + + S +++ L + + + ++ Sbjct: 295 SQGLLCIHDLTGKMLSVNMAGAQALGYQPDELVGRRLADIVSMDHQEGLARYLQIAHTKG 354 Query: 267 SSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + H + L + L + + + + Sbjct: 355 RASGLMHTLHKDGSLRIWLFNNILERDLDEQPYILGNAIDITERHRLEVELNRTQQMLSQ 414 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 T + I F+ + + S D I + + V Sbjct: 415 TNEVARIGFWEVNVLEQTIHWSAVTRSIHEVSDDFIPNLE--TAIYFFKGDHQVIIRNAV 472 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + ++ T + ++ + + + +Q G + + + + Sbjct: 473 TRAIEEGVGYDLELQIVTAK---GQTVWVRALGIPEFDQGRCLRLY-GTFQDIDEKKKVE 528 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + + E ++L + ++ +A+ + + ++ + + + I R + VF Sbjct: 529 QALLTEKLRLAAFVKHAPAAVAMFDLQMNYIAVSNRWMEDYQLTGTIIGRCHYEVF--PT 586 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFS--SCYSLTMHDI 561 TP + + + E + ++ + + + DI Sbjct: 587 TPEAWKAIHARCIQGAVEKKEEDVWRPLGWTHDQYVRWEVRPWYQFDGTIGGIMMLTQDI 646 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++++L AK +AE+ S KS+FLA +SHEIRTPL +IGF++++ P Sbjct: 647 TEICLQRDELKKAKLVAEQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTTLTPT--- 703 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y +++S N +L +ND+LD SKIE+GK+ L E V + E S+A ++ A Sbjct: 704 -QHQYLTIVNQSANALLTTINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQT 762 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNE 735 K + + + A ++PR I D +KQ+ +N+L NA+ FT G +I + S + Sbjct: 763 KGLEVLLNVAPDVPRFIYTDSVRLKQVLVNLLGNAVKFTQQG-EIELKVTATSVSEPGEG 821 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + VRDTG+G+ +K F Q S + GTGLGL +A ++ + + Sbjct: 822 AIRFAVRDTGMGIRADMQQKIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLELI 881 Query: 796 STPAKGTLIEII 807 S P G+ Sbjct: 882 SEPGAGSCFYFT 893 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 72/226 (31%), Gaps = 8/226 (3%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + P + E I +R+ E++ + + + ++D I Sbjct: 119 GFTLGTICVLDKVPRKLSPTQQEALRVLAETAIELIIRRRQTEEIIYVKQLFDLSNDLIC 178 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + +G + N A ++ G+ +L F + + + ++ + T+ Sbjct: 179 LAGVDGFLKKVNPAFHQVLGWDEHYLLSHSFYELVHPDDLIDTQREVAQLANGKK--TIN 236 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + L+ + P + +++E KQ + +L+H++ + Sbjct: 237 FVHRFRCVDGTYCYLQWVATPEPATGYVFGIARNVTEEKQRELRLNHSEAKFRTFFENSQ 296 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 L H+ LT + + Q G + I Sbjct: 297 GLLCI--HD----LTGKMLSVNMAGAQALGYQPDELVGRRLADIVS 336 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 28/372 (7%), Positives = 89/372 (23%), Gaps = 24/372 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + ++ + +G +++G RL D+ + H + + + G Sbjct: 303 DLTGKMLSVNMAGAQALGYQPDELVGRRLADIVSMDHQEGLARYLQIAHTKGRASGLMHT 362 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G+ L + + L + + G I + R + S +E Sbjct: 363 LHKDGS-LRIWLFNNIL-ERDLDEQ-PYILGNAI--DITERHRLEVELNRTQQMLSQTNE 417 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAH----KDDVLKTEKYPLLTS 264 + + + + + + E + V+ Sbjct: 418 VARIGFWEVNVLEQTIHWSAVTRSIHEVSDDFIPNLETAIYFFKGDHQVIIRNAVTRAIE 477 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEGENL 321 E + T + + + + + + Sbjct: 478 EGVGYDLELQIVTAKGQTVWVRALGIPEFDQGRCLRLYGTFQDIDEKKKVEQALLTEKLR 537 Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 V P ++ N + ++ + + + A Sbjct: 538 LAAFVKHAPAAVAMFDLQMNYIAVSNRWMEDYQLT-------GTIIGRCHYEVFPTTPEA 590 Query: 381 IKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 K + + + W + + P+ + + + + + Sbjct: 591 WKAIHARCIQGAVEKKEEDVWRPLGWTHDQYVRWEVRPWYQFD--GTIGGIMMLTQDITE 648 Query: 440 TRINKRKMEIEV 451 + + +++ Sbjct: 649 ICLQRDELKKAK 660 >gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio bacteriovorus HD100] Length = 588 Score = 353 bits (905), Expect = 1e-94, Method: Composition-based stats. Identities = 101/401 (25%), Positives = 172/401 (42%), Gaps = 42/401 (10%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTP 506 +I + +IL++ + +N +G+I NR K FG+ +++L K + Sbjct: 28 QISEQRTRTILDSAYNAFIGMNSDGLITDWNRQAEKTFGWKDKEVLGKELADIVIPHKYR 87 Query: 507 SVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 L L+ L K ++ + + + I + + +HDI+ Sbjct: 88 EAHKKGLAHYLATGEGPVLNKRMEITALHRDGHEIPVEMTIFPFEHNGKHLFGSFLHDIT 147 Query: 563 EWKQEKNKL--------------------------------SHAKKIAEKESSHKSDFLA 590 E K ++KL + A+ + K +FLA Sbjct: 148 ERKATESKLRSLYQDLEHRVQERTQELALANKQLKEDASIRQRLYEQAQTANRLKDEFLA 207 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTPL I+G S+++K+ N I R+ + + I+NDLLD+S+I Sbjct: 208 TVSHELRTPLNVILGHSDILKD---PATSPEEAKVSINAIHRNAQIQVQIINDLLDVSRI 264 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 SGK+ LH +P+ ++ V A VQ+ A K I +R + + D ++Q+ N Sbjct: 265 ISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKSVGGDPERLQQVLWN 324 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +LSNAI FTP GG I + ++ + V + V D G G+ L + F Q + R Sbjct: 325 LLSNAIKFTPKGGNITVKLSNVES-RVQIDVIDNGKGIDPEFLPYVFERFRQEDATTTRR 383 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 G GLGL + + +V+ + G S P +G + P+ Sbjct: 384 YGGLGLGLAIVRHIVEGHGGTVAATSAGPNQGAKFTVSLPV 424 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 19/174 (10%) Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357 +L ++ + F E T +D F + S G + N +K Sbjct: 11 VARFLLSKSERTFLDRFQISEQRTRTILDSAYNAFIGMNSDGLITDWNRQAEKTFGWKDK 70 Query: 358 DDIE---------------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + + GL+ L + N + D I + Sbjct: 71 EVLGKELADIVIPHKYREAHKKGLAHYLATGEGPVLNKRMEITALHRDGHEIPVEMTIFP 130 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLC 455 + N ++ + + + + +++ + QL Sbjct: 131 FEHNGKHLFGSFLHDITERKATESKLRSL--YQDLEHRVQERTQELALANKQLK 182 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 22/225 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW--- 143 +++ G + + + + KT G +++G L D+ + + L Sbjct: 48 MNSDGLITDWNRQAEKTFGWKDKEVLGKELADIVIPHKYREAHKKGLAHYLATGEGPVLN 107 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201 + T +G +P+++ P E +G FG +H + + L Sbjct: 108 KRMEITALHRDGH--EIPVEMTIFP-----FEHNGKHLFGSFLHDITERKATESKLRSLY 160 Query: 202 KKFSHLHEIKKGHSSV------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + H + + ++ E + R+K++ + + + Sbjct: 161 QDLEHRVQERTQELALANKQLKEDASIRQRLYEQAQTANRLKDEFLATVSHELRTPLNVI 220 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 +L ++ + +E +IN + + + S Sbjct: 221 LGHSDIL--KDPATSPEEAKVSINAIHRNAQIQVQIINDLLDVSR 263 >gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein) [Desulfobacterium autotrophicum HRM2] Length = 1003 Score = 353 bits (905), Expect = 1e-94, Method: Composition-based stats. Identities = 117/422 (27%), Positives = 197/422 (46%), Gaps = 38/422 (9%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 E + + + + S + + GIA ++ EG + N + +++GY + ++++ Sbjct: 575 QEILHREKVDKALYKSEARFRSTFQQAAVGIAHVSPEGKFIRINERLCQIWGYGLRELIQ 634 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 K F + + +++ +K + + + L S Sbjct: 635 KNFQEITHSEDLNADLDLVQQVI-DGKISRYSMEKRYISKNGYPVWCNLTVSLLRNSDGT 693 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + DIS+ K+ + +L AK AEK + KS+FLA + HE+RTPL A+IGFSEV+ Sbjct: 694 PRYFISVVEDISQRKKAEERLLSAKIEAEKANIAKSNFLASMGHELRTPLNAVIGFSEVL 753 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +Q FGPL NP+ EY N I SG +L ++ND+LD+SK+E+G M P LD + E Sbjct: 754 LDQFFGPL-NPQQAEYVNDILHSGRHLLTLINDILDLSKVEAGWMRFLPVPTPLDSVMGE 812 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 ++ + EK+I + +I +D +KQI ++LSNA FTP GG I I+ Sbjct: 813 SLKTIGPMIKEKQIRLIRDLPKEFSKIHLHSDPVKLKQIFNHLLSNAAKFTPKGGTITIT 872 Query: 729 TTHTSN--------------------------EEVILRVRDTGVGMTNYELEKAMKPFGQ 762 S+ V + +RDTG G+T+ +K + F Q Sbjct: 873 GKIVSDVCLPSNMALKDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTSGHSDKIFESFFQ 932 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY---DTSHPHD 818 + + GTGLGL LA+ V+ + G+ ++ S KG+ PL ++ HP + Sbjct: 933 VEGGISDKSPGTGLGLSLARRFVEMHKGRIWVHSDGLGKGSCFYFTIPLALDEESLHPEE 992 Query: 819 CI 820 + Sbjct: 993 QL 994 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 24/262 (9%), Positives = 68/262 (25%), Gaps = 12/262 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNT-WYGK 146 + G I+E L + G ++I +++ ++ + + + ++ + + + + Sbjct: 608 VSPEGKFIRINERLCQIWGYGLRELIQKNFQEITHSEDLNADLDLVQQVIDGKISRYSME 667 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G V +L + + + F +V + Sbjct: 668 KRYISKNG--YPVWCNLTVSLLRNSDGTPRYF--ISVVEDISQRKKAEERLLSAKIEAEK 723 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSE 265 + K + + + ++ L A + + LLT Sbjct: 724 ANIAKSNFLASMGHELRTPLNAVIGFSEVLLDQFFGPLNPQQAEYVNDILHSGRHLLT-- 781 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + L + ES + + + + Sbjct: 782 --LINDILDLSKVEAGWMRFLPVPTPLDSVMGESLKTIGPMIKEKQIRLIRDLPKEFSKI 839 Query: 326 VDKCPIPFFVYSHGNLFYANPS 347 P + N +N + Sbjct: 840 -HLHSDPVKLKQIFNHLLSNAA 860 >gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236] Length = 1334 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 112/652 (17%), Positives = 231/652 (35%), Gaps = 36/652 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + D + AL + + ++ + V + I + K+ Sbjct: 181 LARNMTADLERLALVAKNTSNAVVITDVNREIVWVNEGFERITGYSQDEALGKSPGKLLQ 240 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + +KT + + + +Y + N+ E + Sbjct: 241 CSSTDHSVKTAMKTAL-----DAGEPFKGEIVNRSKSGQEYWIELEIQPRYNDQNEPIGF 295 Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355 ++ + S + + + + S G + N +F ++ Y Sbjct: 296 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADSAGLITDVNDAFCNISGYS 355 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + L D + + ++ + Sbjct: 356 REELVGQ----TYRLIDSHTHDAAFWQSMWHNIANGISWRGEICNKA---KGGRLYWVDT 408 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGII 474 N + I+ + +I + + I QL + GI N +EG Sbjct: 409 TIAPFKNSTGQIERYISIQIDITANKIQQANLIIAKNQLVRAADVAELGIWTWNIQEGTF 468 Query: 475 LS---TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 N + + + + + ++N+ + L + Sbjct: 469 SFDDRMNDIYELPEEMRNTPLPQAYWYSLVHPDDRPIVNNAVKTALDNGGIYRQIFRIIV 528 Query: 532 STKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + +++ + + DI++ ++ +N L A++ AE+ + KS FL Sbjct: 529 -HGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQSARQAAEEANKAKSAFL 587 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHE+RTP+ AI+G +++ N + +YA + + +L ++ND+LD SK Sbjct: 588 ANMSHELRTPMNAILGMLTLLRKTGL----NNKQADYAVKSEAATRTLLRLLNDILDFSK 643 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 IE+GKM L P + + + ++ K++ + +P+ + D ++QI Sbjct: 644 IEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTLPQFVEGDSMRLQQIL 703 Query: 709 LNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPN 765 N+ NA+ FT G ++ I +++V L VRDTG+G+ E F Q Sbjct: 704 TNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGIAPEHQESIFGGFTQAEA 763 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815 S R GTGLGL +++ V G+ + S P +G+L I PL S+ Sbjct: 764 STTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTITLPLSSPSN 815 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 55/441 (12%), Positives = 126/441 (28%), Gaps = 28/441 (6%) Query: 154 GTNLYVPIDLAA-LPIYSRNRE--FSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLH 208 G L+VP+ + P+ R+ G IV + + D G+ + F L+ Sbjct: 25 GVLLFVPVYKSGTHPMTPAERQASLVGLLYSPIV-IADLLRDIPEFMSGRVDIELFDSLN 83 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ + + + ++ + + +T SS Sbjct: 84 DLSNKTMVFDADGSKY------DNLIPDEDHNDETMAARIFHNTSILPLPGREMTLRISS 137 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPETVD 327 P E + + +S RN + A Sbjct: 138 TPAFEALTERYAPWLVFAFGLLLSSALALLIRQQVSGRNRAEMLARNMTADLERLALVAK 197 Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + + + N F +T Y + + + G L +D++ + Sbjct: 198 NTSNAVVITDVNREIVWVNEGFERITGYSQDEALGKSPGK---LLQCSSTDHSVKTAMKT 254 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + + N E + IE + + + ++ Sbjct: 255 ALDAGEPFKGEIVNRSKS---GQEYWIELEIQPRYNDQNEPIGFMAIESDISERKATYQR 311 Query: 447 MEIEVMQLCSILEATS-DGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +E + + ++L + GI + G+I N A + GY E+++ + + + Sbjct: 312 LEAALRENNALLSTLNLHGIISTADSAGLITDVNDAFCNISGYSREELVGQTYRLIDSHT 371 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 + + ++ + K +L + I S+ Y D Sbjct: 372 HDAAFWQSMWHNIANGISWRG--EICNKAKGGRLYWVDTTIAPFKNSTGQIERYISIQID 429 Query: 561 ISEWKQEKNKLSHAKKIAEKE 581 I+ K ++ L AK + Sbjct: 430 ITANKIQQANLIIAKNQLVRA 450 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 37/378 (9%), Positives = 96/378 (25%), Gaps = 23/378 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146 D + + ++E + G + +G + D + L + G+ Sbjct: 206 TDVNREIVWVNEGFERITGYSQDEALGKSPGKLLQCSSTDHSVKTAMKTALDAGEPFKGE 265 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G I+L P Y+ E GF I + ++ + Sbjct: 266 IVNRSKSG--QEYWIELEIQPRYNDQNEPIGFM--AIESDISERKATYQRLEAALRENNA 321 Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L G S I ++ + ++ T + Sbjct: 322 LLSTLNLHGIISTADSAGLITDVNDAFCNISGYSREELVGQTYRLIDSHTHDAAFWQSMW 381 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317 + + + + + Y +N++ + Y+S + + + Sbjct: 382 HNIANGISWRGEICNKAKGGRLYWVDTTIAPFKNSTGQIERYISIQIDITANKIQQANLI 441 Query: 318 -GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPK 374 +N D + + + N+ SF Y+ +++ + Sbjct: 442 IAKNQLVRAADVAELGIWTW---NIQEGTFSFDDRMNDIYELPEEMRNTPLPQAYWYSLV 498 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D+ I + + I + + +++ + GI Sbjct: 499 HPDDRPIVNNAVKTALDNGGIYRQIFRIIV--HGQVRYIQSTGTVERDEYGNAVLMMGIN 556 Query: 435 PEDVDTRINKRKMEIEVM 452 + R + ++ Sbjct: 557 RDITQQREAENILQSARQ 574 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 19/251 (7%), Positives = 61/251 (24%), Gaps = 12/251 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148 D+ G + ++++ G +++G + S + + +W G+ Sbjct: 336 DSAGLITDVNDAFCNISGYSREELVGQTYRLIDSHTHDAAFWQSMWHNIANGISWRGEIC 395 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G +V +A P + + + I + +A + Sbjct: 396 NKAKGGRLYWVDTTIA--PFKNSTGQIERYISIQI--DITANKIQQANLIIAKNQLVRAA 451 Query: 209 EIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + + P +R + H DD Sbjct: 452 DVAELGIWTWNIQEGTFSFDDRMNDIYELPEEMRNTPLPQAYWYSLVHPDDRPIVNNAVK 511 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + Q ++ + ++ + + + + Sbjct: 512 TALDNGGIYRQIFRIIVHGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQS 571 Query: 322 TPETVDKCPIP 332 + ++ Sbjct: 572 ARQAAEEANKA 582 >gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 939 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 99/511 (19%), Positives = 186/511 (36%), Gaps = 24/511 (4%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAGGLSTL 369 + + + + N F + D++ Sbjct: 172 EEALRTSAHRLSNLIADFQEGILLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMA 231 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + + I + + Sbjct: 232 EQSKGFFREQDAFVARVNQLLQEQKLVIGE--EISLADGRTFE---RDYIPIFIDGVYAG 286 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + + I+E + G+ ++ E I+ TN++ + GY Sbjct: 287 HLWKYTDITKRKHAEDAAFYLNEKYQRIIENMNLGLIEVDLEERIVYTNQSFCAMSGYEP 346 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++++ + T L + E K + + L Sbjct: 347 DELIGQVATDILLKGQNIQFMKEKNESRLRGN--VDAYEVSIKNKRGDAMWWLVSGAPLY 404 Query: 550 FSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 S DI++ KQ +++L AK+ AE + K FLA +SHEIRTP+ AI+ Sbjct: 405 SQSGQVIGSTGIHLDITKQKQLESELRVAKQEAEHSARVKELFLANMSHEIRTPMNAILN 464 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + I + I+ + + +L I+ND+LD SKIE+G+++L L Sbjct: 465 LGQQITKTSL----TEHQQFFIGMINTAASNLLVIINDILDFSKIEAGELSLEHINFDLA 520 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + +A+ ++ A +K ++I T + +P +L D + QI LN++ N++ FT +G Sbjct: 521 DLIGQAVQVMTHDAEKKGLVISTEIGSGLPPTLLGDPFRINQILLNLIGNSVKFTNAGS- 579 Query: 725 III---STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + I S N+ + L V DTG+G+ L F Q S R G+GLG+ + Sbjct: 580 VHIQCNSKKVAGNQLITLSVTDTGIGIAPEFLSNLFTKFTQEDGSIGRRYGGSGLGMSIT 639 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI--IFPL 810 K +VD G + S KGT + + P+ Sbjct: 640 KQLVDLMGGTIDVKSEKNKGTTVTVKLSLPI 670 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/305 (8%), Positives = 86/305 (28%), Gaps = 10/305 (3%) Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341 +N + L A E ++ + + Sbjct: 12 EPLSTDSLHQENERLRAETKLLKDTIRQQQAELRRIEQRWKFALEGFGDAVWELNLQTRE 71 Query: 342 FYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + + Y + +I + L + + + L + Sbjct: 72 IIRSARYREILGYTLEEFPDIVEVWMDKLHPQDWQNLTDPDMSLYLS---GVRKSHVTEY 128 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + ++ + + G + + + + +L +++ Sbjct: 129 RLLAKDGTYKHFLDKGRVFSYSEDGKPLLMIGTSTDITHQKNIEEALRTSAHRLSNLIAD 188 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQN--TPSVMNHYLTEI 516 +GI + + I+ N+ +F P ++++ + EQ+ + ++ + Sbjct: 189 FQEGILLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMAEQSKGFFREQDAFVARV 248 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAK 575 L Q L S + + I + + + DI++ K ++ + Sbjct: 249 NQLLQEQKLVIGEEISLADGRTFERDYIPIFIDGVYAGHLWKYTDITKRKHAEDAAFYLN 308 Query: 576 KIAEK 580 + ++ Sbjct: 309 EKYQR 313 Score = 74.3 bits (181), Expect = 9e-11, Method: Composition-based stats. Identities = 39/386 (10%), Positives = 104/386 (26%), Gaps = 29/386 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILH----IDPNNHIGDLLKR 139 W ++ S + +G + I D DP+ + L Sbjct: 62 VWELNLQTREIIRSARYREILGYTLEEFPDIVEVWMDKLHPQDWQNLTDPDMSL-YLSGV 120 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + + L +GT +D + YS + + G + + Sbjct: 121 RKSHVTEYRLLAKDGT-YKHFLDKGRVFSYSEDGKP--LLMIGTSTDITHQKNIEEALRT 177 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLK 255 + S+L + +E E I +++ + + Sbjct: 178 SAHRLSNLIADFQEGILLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMAEQSKGF 237 Query: 256 TEKYPLLTSEESSLPEQEDF----HTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNH 308 + + + L +++ + T ++ + + + + ++Y Sbjct: 238 FREQDAFVARVNQLLQEQKLVIGEEISLADGRTFERDYIPIFIDGVYAGHLWKYTDITKR 297 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 ++ + V + Y N SF ++ Y+ + I Sbjct: 298 KHAEDAAFYLNEKYQRIIENMNLGLIEVDLEERIVYTNQSFCAMSGYEPDELIGQV-ATD 356 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 LL + L A +I+ R +++ +Q + Sbjct: 357 ILLKGQNIQFMKEKNESRLR------GNVDAYEVSIKNKRGDAMWWLVSGAPLYSQSGQV 410 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ 453 + GI + + + ++ + + Sbjct: 411 IGSTGIHLDITKQKQLESELRVAKQE 436 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 45/142 (31%), Gaps = 5/142 (3%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGK 146 +D + ++ G ++IG D+ +I + R N + Sbjct: 324 EVDLEERIVYTNQSFCAMSGYEPDELIGQVATDILLKGQNIQFMKEKNESRLRGNVDAYE 383 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 ++ G ++ + + P+YS++ + G G + + + ++ H Sbjct: 384 VSIKNKRGDAMWWLV--SGAPLYSQSGQVIGSTGIHL--DITKQKQLESELRVAKQEAEH 439 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228 +K+ + + Sbjct: 440 SARVKELFLANMSHEIRTPMNA 461 >gi|168699668|ref|ZP_02731945.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 964 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 111/810 (13%), Positives = 241/810 (29%), Gaps = 95/810 (11%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY-LKEISEELPKTI 106 + + +D + + + + + +P VR G + +++ + Sbjct: 56 TQDSLPESDVRLRLLESAVIHAHDAVAIVEAVPGPVR-------PGRSVMYVNDAFCRLT 108 Query: 107 GNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 G +IG L + + + + + + + +GT +DL+A Sbjct: 109 GYSRADVIGRSLYMLRGASTDPETLARLATAMDAGTSLRVELRNYRKDGTPF--WVDLSA 166 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 +P+ + S + I ++ + + + G S + Sbjct: 167 VPVPDPDGTLSHW--VLIQRDIDRRKSAERRARQTGQLLRAIIDAFPGPISAKDRDGRYL 224 Query: 226 SQQ-----------SPPPHLRMKNKVSSLTEYYAHKDDV---LKTEKYPLLTSEESSLPE 271 V + D T + + Sbjct: 225 VMNQFQAELLGVTPEAAVGRTATELVGPAHGAKTAERDREVMATCRPTQFETRYPAPNGD 284 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + + + L + + E + P Sbjct: 285 ERPWLASKAPLWMPDGIDSEPAGARGVVTVALDISALKAAEDALRKSEERYRQLFRAVPH 344 Query: 332 PFFVYSHG--NLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSDNNAIK 382 P FVY + N + L Y + DI + L + Sbjct: 345 PVFVYDTQTLRVLAINEAALRKYGYTRDEFLTLTVSDIRVLDAEPPLAPGDSSRPDGPPA 404 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + + + + R Sbjct: 405 LRRHRTRSGALLDVEVSSFALSLEGRGV-------------------KLALVNDVTERRK 445 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + ++ I E+TS G+++ N G+ +S N A + + G VE++L+ Sbjct: 446 AEEELRRSEGMFRGIFESTSAGVSLTNAAGLFVSCNPAFAAMLGRSVEEVLQLTPASVTH 505 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTM 558 + + E+ + R + +++ + + + Sbjct: 506 PEDLAAQQALMDEVRA-GARDRFAYSLRYLRPDGQVVWAELSFAAIRDARGAYEYGLGVS 564 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +++E + +++L A K+ V+H+ LTA++G +++ P Sbjct: 565 VNVTERRLLEDQLRQAHKM-----EAIGQMAGGVAHDFNNLLTAVLGNLSLVRLGPDDPN 619 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G E +++ D+ LL ++ + L F PV A++E + L++ Sbjct: 620 G-----ELVCAAEQAATRAADLTRKLLGYAR----RNQLVFAPVEPLAALNEVVGLMRCT 670 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----- 733 R+ + + P + AD + Q +N+ NA P GG ++ + Sbjct: 671 V-GPRVGLTVDVPPDCPPVHADPTLLVQAIMNLGLNARDAMPDGGVVVFTARPVDLRPDD 729 Query: 734 -----------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 V V DTG GM++ + +PF G+GTGLGLP+ Sbjct: 730 PVPAGWDDVPPGRYVRFTVADTGCGMSDEVKTRLFEPFFTTKG----IGKGTGLGLPMVH 785 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +V + G + S P GT +E+ P+ + Sbjct: 786 GIVKQHHGWIEVHSAPGTGTRMELNLPVSE 815 >gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7] Length = 1350 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 133/771 (17%), Positives = 245/771 (31%), Gaps = 67/771 (8%) Query: 83 VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----K 138 F + A G + +G +G + D I IDP L Sbjct: 116 AEFVRRVRADGR-----PDFS--LGR-----LGAQQGDRFIIQFIDPLARNVQALGLDIA 163 Query: 139 RQNTWYGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + G L PI L + + F V+ AL Sbjct: 164 SEEHRRDAALQAMRSGAATLSAPITL----LQDNDDHLRAFLFLLPVYSTPETPTDIALR 219 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + +++ + S + + + T H+ +VL+T Sbjct: 220 ETSLIGWTYAPLAMREVMSNLDPLNHRVHLKLYD--VSEGQHLIYQTPESGHEQEVLQTY 277 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + E + + + Sbjct: 278 AFERDIYGRVWRMEVGAHPAFAEALDPVPAGRAFIIGTLVSLMLTVLVGTLLLSRQRKQQ 337 Query: 318 ---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL------- 366 G+ V+ G + N + + Y + + Sbjct: 338 VVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGCPLAPLLVPPDL 397 Query: 367 ----STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 LL+ + + I + I+ L + + + Sbjct: 398 VHEDEQLLERVARGERGPTLETRRLHKNGQLIDVTITCSFIRETDGTILGAAKMMHDITD 457 Query: 423 QFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRA 480 + + + ++ L +L+A+S+ I + +G I NR Sbjct: 458 RKRVERYLMEFNAQLEQQVSERTAELSRVAGLLQGVLDASSEVSIIATDMQGQIFVFNRG 517 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------K 527 L GY +++ + ++ + Sbjct: 518 AELLLGYSNAEMVSGNGPGVFHLPEEVAARSAELSREYGTPIEGIDVFCYKASLEGSETR 577 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K+ + + +II + + + DI+E +L AK AE ++ Sbjct: 578 QWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANA 637 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ A+IG S ++ N N + + + +G +L I+ND Sbjct: 638 AKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLTKLQIAGRTLLGIIND 693 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702 +LDI+KIE+G+M L P S + + E L A EK + S ++P +++ D Sbjct: 694 ILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVSVVASLPGQLIGDAL 753 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758 V QI +N++ NA+ FT GG + ++ + + + V+DTG G+ L + Sbjct: 754 RVNQILMNLVGNALKFTTVGG-VDVTVSREDDHADTCWLRFSVQDTGCGIPANALGQLFA 812 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q S R GTGLGL + + + + G+ + S G+ + P Sbjct: 813 PFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSEFWVELP 863 Score = 117 bits (294), Expect = 7e-24, Method: Composition-based stats. Identities = 65/433 (15%), Positives = 135/433 (31%), Gaps = 45/433 (10%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + +E+ G RGFG + RV A R + + + +++ I Sbjct: 92 RNIEKEYPGARGFGFIR--RVAASDEAEFVRRVRADGRPDFSLGRLGAQQGDRFIIQFID 149 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 +++ + E+ L++ + L + +D L Sbjct: 150 PLARNVQALGLDIASEEHRRDAALQAMRSGAATLSAPITLLQDNDDHLRAFLFLLPVYST 209 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 T + + + P + V Sbjct: 210 PETPTDIALRETSLIGWTYAPLAMREVMSNLDPLNHRVH--------------------- 248 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 L L + + ++ + V+ + R+ ++ Sbjct: 249 LKLYDVSEGQHLI-----------YQTPESGHEQEVLQTYA--FERDIYGRVWRMEVGAH 295 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEATSDG 464 + A P F + + V T + R+ + + +L +I+E +SD Sbjct: 296 PAFAEALDPVPAGRAFIIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENSSDA 355 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I +G I++ NRA ++FGY ++L P L + L E ++ R Sbjct: 356 IIGEALDGRIITWNRAAEQMFGYDEHEVLGCPLAPLLVPPDLVHEDEQLLERVARGERGP 415 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580 T K +L+ + I + + L MHDI++ K+ + L E+ Sbjct: 416 -TLETRRLHKNGQLIDVTITCSFIRETDGTILGAAKMMHDITDRKRVERYLMEFNAQLEQ 474 Query: 581 ESSHKSDFLARVS 593 + S ++ L+RV+ Sbjct: 475 QVSERTAELSRVA 487 >gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex degensii KC4] Length = 418 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 170/402 (42%), Gaps = 26/402 (6%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 L F+ ++ P R+ ++ E QL +IL + + Sbjct: 39 GVGLVGLFVLILAISRRPTPPAALDTNLSSHQLRLQLAELIREKEQLEAILSGLDEAVLA 98 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +++EG +L NRAV +LF E+ K + + + + + E+ Sbjct: 99 LDQEGRVLLANRAVKELFDIAPEEARGKAVLEVVRDHR---LEELVGRVRDTGTPT--EQ 153 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + ++ +R + + +++ ++ + Sbjct: 154 ELTFLSPQPRIFVVRASPLPPDK---VVVVLREVTRERRLERMRRE-------------- 196 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A VSHE+RTPLTAI GF E +++ E+ I ++ +V DLL + Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGAL--EDRETAQEFLQIIASETERLIHLVEDLLKL 254 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S++E+ + L + V+L+E + + + A EK + +P +L D + Q+ Sbjct: 255 SRLENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQV 314 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +N++ NA+ +TP G ++ I + + V + V DTG+G+ L + + F ++ ++ Sbjct: 315 FVNLIDNALKYTPVG-RVRIRGEYQ-SGWVRIEVEDTGIGIPQDCLPRVFERFFRVDRAR 372 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K +V+ + GK + S KG+ + P Sbjct: 373 SRASGGTGLGLSIVKHIVELHGGKVGVESELGKGSRFWVYLP 414 >gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 865 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 111/563 (19%), Positives = 217/563 (38%), Gaps = 25/563 (4%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP-ETVDKC 329 ++ + + N + + + S +E + ++ Sbjct: 166 DEFRIVWPEKSIHWIAAKGRFFYNEQGQPVRMIGVCMDITESKRSEENTRQLATQVQEQA 225 Query: 330 PI--PFFVYSHGNLFYANPSF---LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP- 383 I S +++ N + + +V + + + L K Sbjct: 226 NILNAILATSVDHIYILNRTGHYQYVSYGGAAVLGLHPQQMIGKTVQEIDLPQELIDKMN 285 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + + ++ P N E + + + + Sbjct: 286 GQFLTVMKVGEPIKDECEYVAEDGKHYYEYILTPLRNVNHSIE--GVITVSRDMTEHKRA 343 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVF 500 ++ + + + E+ G+A N +G I N A ++ GY E+ + + + Sbjct: 344 EQSIRNSEARFRRLFESNLIGVAFWNVDGFITDANDAYLQIVGYTREEFDTLGKINWREL 403 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + + E+ + + + EK + + L I + + + D Sbjct: 404 TPPDCEHLDTRAIAEVKANGISRIYEKQYIQRNGRRVSIVLGIALLDDSDEQGVAFVL-D 462 Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ISE K + + A+K AE + K +FLA +SHE+RTPL I+G+S++++++ Sbjct: 463 ISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSR 522 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +F R I+R+ L ++ DLLD+S+I GK++L+ PVSL + AI Sbjct: 523 QFDAATTDRA---LETIERNATLQTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAID 579 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 V+L A K I I+ F + +++ D ++Q+ N+LSNA+ FT GG + I Sbjct: 580 TVRLAAEAKEIKIQNVFDPELGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAV- 638 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 N++ ++V DTG G+T L F Q + + G GLGL + + +V+ + G Sbjct: 639 NDQAQIQVIDTGKGITPEFLPYVFDYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQ 698 Query: 794 IFS-TPAKGTLIEIIFPLYDTSH 815 S G + PL Sbjct: 699 ATSPGEGLGATFTVNLPLSPKHE 721 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 60/216 (27%), Gaps = 4/216 (1%) Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + L + ++ L + + L I + PE + ++ E Sbjct: 19 RQRIAELEQLEKQYQYKQVELERRIEDLQAKLRTPNIANVDIERHPEPVTLQRLQQEISQ 78 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPF 497 + + + L+A + G N + + LFG + F Sbjct: 79 RQQVDAALTESEERWRLALDAANLGFWDWNVLTEKVVWSENHELLFGLVPGSFDGAYETF 138 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 + + ++ L+ E + K ++ + Sbjct: 139 LCCVHPEDRESVMQVISACLNNKTDYYDEFRIVWPEKSIHWIAAKGRFFYNEQGQPVRMI 198 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 DI+E K+ + +++++ + LA Sbjct: 199 GVCMDITESKRSEENTRQLATQVQEQANILNAILAT 234 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 42/417 (10%), Positives = 107/417 (25%), Gaps = 29/417 (6%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107 + + + + Q + + N + + + ++ G+ + +S +G Sbjct: 205 TESKRSEENTRQLATQVQEQANILNAILATSVDH----IYILNRTGHYQYVSYGGAAVLG 260 Query: 108 NYAFKMIGMRLCDV-SDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 + +MIG + ++ ID N ++K + +G + Y + Sbjct: 261 LHPQQMIGKTVQEIDLPQELIDKMNGQFLTVMKVGEPIKDECEYVAEDGKHYY---EYIL 317 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 P+ + N G + + + +F L E + I Sbjct: 318 TPLRNVNHSIEGV--ITVSRDMTEHKRAEQSIRNSEARFRRLFESNLIGVAFWNVDGFIT 375 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + + T + ++ + L T + + Sbjct: 376 DANDAYLQIVGYTREEFDTLGKINWRELTPPDCEHLDTRAIAEVKANGISRIYEKQYI-- 433 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 Q G + L + D+ + AN Sbjct: 434 -QRNGRRVSIVLGIALLDDSDEQGVAFVLDISERKLAEQQRDRLLCAERIARKDA-EIAN 491 Query: 346 P---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 FL + ++ + G S LL + + + + I +A L T Sbjct: 492 RIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRAL-------ETIERNATLQT 544 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + + P + + E + +++ ++ + Sbjct: 545 QLIED----LLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFD 597 >gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 827 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 102/388 (26%), Positives = 187/388 (48%), Gaps = 16/388 (4%) Query: 431 NGIEPEDVDTRINKRKME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 R + ++E E+ QL ++ + SD I + + I N A S++ GY Sbjct: 291 AVRRATINTLRKRETELERNQAELEQLSTVAQNASDSIVLSGPDQRIFWVNEAFSRMTGY 350 Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 V++ + K L T ++E +S R L + L TK K + + + Sbjct: 351 TVDEAVGKRPGELLNGPETDPATIREISEYISRGER--LHREILNYTKSGKTIWVDTNLV 408 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + D++ KQ +L+ AK AE+ K++FLA +SHEIRTP+ Sbjct: 409 PVLDEDGEINMVIGIERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNG 468 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG ++++ + +Y I S +L I+ND+LD++++ESGK++L Sbjct: 469 IIGMADLLSETEL----HEDQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDF 524 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L+ + A+ +++ A+EK + + ++A+ +PR + AD ++QI +N++ NA+ FT S Sbjct: 525 DLESCIENAVDILRPVASEKGLDLTVNYASGLPRTVRADDGRLRQILVNLVGNAVKFTAS 584 Query: 722 GGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G + + T+ + + V+DTG+GMT+ +L F Q + GTGLGL + Sbjct: 585 GRVDVRVLCASTNPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTI 644 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + G ++S P +G+ + Sbjct: 645 SRLLAKQMDGDITVYSDPGRGSCFSLHI 672 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 6/138 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147 + ++E + G + +G R ++ + DP I + + R + + Sbjct: 332 GPDQRIFWVNEAFSRMTGYTVDEAVGKRPGELLNGPETDPATIREISEYISRGERLHREI 391 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G + +D +P+ + E + GI A Sbjct: 392 LNYTKSGKT--IWVDTNLVPVLDEDGEINMV--IGIERDVTSQKQNAAELAVAKVAAEQA 447 Query: 208 HEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 448 DRTKTEFLANMSHEIRTP 465 >gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis HAW-EB4] Length = 1180 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 110/505 (21%), Positives = 205/505 (40%), Gaps = 19/505 (3%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + F V G + NP+ L YK+ + I L + Sbjct: 224 QALESANIRLNAILQTAVDGFVVVDTKGLIEEVNPAVSRLFGYKASELIGQNVSLLMPTN 283 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + D L ++ + L + + + + + Sbjct: 284 ERNVHDEYIQH--YLESAEDKMVGKGRELLAQKKDG---TLFSIELSISKMCIDDEVLFL 338 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G+ + D + + + L + LE + D + I+ G + N A LF Y E Sbjct: 339 GLVKDLSDVKRAQVAAQRTESILLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQ 398 Query: 492 ILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKL 548 ++ + +V ++ L E ++ S + K +++ + + + Sbjct: 399 MIGQRLESVLFAGEEKLHFHNILEEYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPV 458 Query: 549 PFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 S + DIS + + +L AK+ AE+ S KS FLA +SHEIR+PL A++G Sbjct: 459 QLGSEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGS 518 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++I + R N YAN +G +L +ND+LD SKIE+G+M L S + Sbjct: 519 VDLILDSRL----NKEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAK 574 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 ++ + ++ A +K I++ N+P ++ D + ++Q+ N++ NAI F+ GG + Sbjct: 575 LATQVLQVLSPKAQDKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKFSF-GGCV 633 Query: 726 IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I +E L ++ D G+G++ L + F Q+ +S GTGLGL + Sbjct: 634 AIEMWLADTDEARLCCKISDQGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLGLAICAE 693 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 ++ G+ + S KG+ Sbjct: 694 LIAQMGGQIAVKSQQGKGSCFSFDL 718 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 38/394 (9%), Positives = 103/394 (26%), Gaps = 37/394 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLK-RQNTWYGK 146 +D G ++E++ + + G A ++IG + + + ++ I L+ ++ GK Sbjct: 247 VDTKGLIEEVNPAVSRLFGYKASELIGQNVSLLMPTNERNVHDEYIQHYLESAEDKMVGK 306 Query: 147 TTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +GT + + ++ + I G+V + +R + Sbjct: 307 GRELLAQKKDGTLFSIELSISKMCIDDE------VLFLGLVKDLSDVKRAQVAAQRTESI 360 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK----T 256 E + ++ + + E + Sbjct: 361 LLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQMIGQRLESVLFAGEEKLHFHNI 420 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + +T + ++ + + + S ++ Sbjct: 421 LEEYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPVQLGSEMLLTAFIRDISRRMEYE 480 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 L E ++ A FL ++ + G L+ +L+ Sbjct: 481 TQLKLAKEQAEQGSE------------AKSRFLATMSHEIRSPLNAVLGSVDLILDSRLN 528 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN----- 431 I + + ++ + + + F A + + Sbjct: 529 KEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAKLATQVLQVLSPKAQ 588 Query: 432 --GIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 GI + R + + +L +L D Sbjct: 589 DKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLID 622 >gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] Length = 845 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 118/528 (22%), Positives = 220/528 (41%), Gaps = 47/528 (8%) Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + ++ P + Y+ G N +F ++ Y + + I L K + Sbjct: 324 ESLFSDMMIESMPGILYFYNYEGRFLRWNHNFQSVSGYTNRE-ITKMHPLDFFAPEEKAA 382 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 N I V + A L + + + + + G+ + Sbjct: 383 VANKISEVF---TKGQAF-VEASL--LSKDGKKTPYFFTGRNVTFKGTDCLV---GMGID 433 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + K+ + ++E+ + I N +G I N FGY + I+ K Sbjct: 434 ISERKNAELKLNESEQKYGELVESANSIILRWNAQGYITFLNSFGLHFFGYAFDQIVGKH 493 Query: 497 FTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + NT S L + + LD + + I + + + + K + + Sbjct: 494 VIGTIVPNTDSAGRDLQMLMQQICLDTKVFEQNINENTRSNGERVWISWTNKVVLDGQGH 553 Query: 555 SL----TMHDISEWKQEK------------------NKLSHAKKIAEKESSHKSDFLARV 592 + +DI+E + +L A AE KS FLA + Sbjct: 554 VVEILSIGNDITERLLAEQEIRELNASLEKRVTERTEELQTALIRAEAADKIKSAFLATM 613 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL +IIGF+ +I GPL N + + + S +L+++ND+LDISKIE+ Sbjct: 614 SHELRTPLNSIIGFTGIILQGLAGPLNNEQTKQ-LGMVRGSARHLLELINDVLDISKIEA 672 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G++ ++ E +L + ++ + +K +++ TS + + I++D R ++QI +N++ Sbjct: 673 GQLEVNSETFNLVALIERVVNSLTPMIEKKGLVLHTSISKELGEIVSDRRRLEQILINLV 732 Query: 713 SNAIHFTPSGGQIIISTTH----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +NA FT G I I+ T + L V DTG+G+ +L+ KPF Q Sbjct: 733 NNAAKFTEKGS-ITITAEIVNDLKDSLDTTPTRFLKLSVIDTGIGIKPDDLDLLFKPFHQ 791 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 I + EGTGLGL + + +++ G+ Y S + G+ ++ P+ Sbjct: 792 IDSGLSRLHEGTGLGLAICRRLLELMGGQIYAVSEWSTGSKFTVLLPM 839 Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 4/133 (3%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 ++ E DGI I + + L N ++ + GY ++++ T + Q+ + Sbjct: 24 EASYRALFEYAPDGILIADAQSYYLDANPSICNMLGYTRDELIGMHATDIVVQSEVPHIQ 83 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L I + + + L K+ + S I+ +P S + DI+ K+++ + Sbjct: 84 SALDIIQT---KSDYTREWLLRRKDGSVFSAEIMATTMPDGS-LLGLIRDITVLKEQQRE 139 Query: 571 LSHAKKIAEKESS 583 +S ++ + Sbjct: 140 ISQLSRLYAALTK 152 Score = 50.8 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 20/169 (11%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 + + + +SV F + P + DA Y + + + +G Sbjct: 9 QSTGEISNQSVHQIGEASYRALFEYAPDGILI-----ADAQSYYLDANPSICNMLGYTRD 63 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW---PIEGTNLYVPIDLAALPI 168 ++IGM D+ + HI L T T W +G+ I +P Sbjct: 64 ELIGMHATDIVVQSEV---PHIQSALDIIQTKSDYTREWLLRRKDGSVFSAEIMATTMP- 119 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217 + G + V + + +L + ++ L +I + + Sbjct: 120 ---DGSLLGL-----IRDITVLKEQQREISQLSRLYAALTKINQAIIWL 160 Score = 45.4 bits (106), Expect = 0.039, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 61/249 (24%), Gaps = 22/249 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLW 150 G + G ++ M D N I ++ + + + +L Sbjct: 345 EGRFLRWNHNFQSVSGYTNREITKMHPLDFFAPEEKAAVANKISEVFTKGQAFV-EASLL 403 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSG---FRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G P + F G G GI + ++K+ L Sbjct: 404 SKDG--KKTPYFFTGRNV-----TFKGTDCLVGMGI--DISERKNAELKLNESEQKYGEL 454 Query: 208 HEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 E + I S + K+ + ++ L+ Sbjct: 455 VESANSIILRWNAQGYITFLNSFGLHFFGYAFDQIVGKHVIGTIVPNTDSAGRDLQMLMQ 514 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + N + + + E LS N + ++ Sbjct: 515 QICLDTKVFEQNINENTRSNGERVWISWTNKVVLDGQGHVVEILSIGNDITERLLAEQEI 574 Query: 320 NLTPETVDK 328 +++K Sbjct: 575 RELNASLEK 583 >gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium sp. MP5ACTX9] Length = 797 Score = 352 bits (904), Expect = 1e-94, Method: Composition-based stats. Identities = 102/656 (15%), Positives = 208/656 (31%), Gaps = 52/656 (7%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVS 241 R + S + + V I +++ V Sbjct: 167 RAGRSRLRVESALSVERNFVSAMLDTVGALVLVRDTAGRIVRFNRTCEAVSGYDLQSMVG 226 Query: 242 SLTEYYAHKDDVL--KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE- 298 ++ + + + + S + + + + L + + Sbjct: 227 RYVWEKLIPENEVAESVSTFERIVNGSSPTSFENHWLRRDGSLRRIAWSATALVDPQGQT 286 Query: 299 ---SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354 + E E + ++ + G L N Y Sbjct: 287 NFIISTGIDVTEQREAEDTLRESEARYRQLIEGSLGMVCTHDLEGKLLSVNLHGAQSVGY 346 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + I L L+ + R + A RL+ N + Sbjct: 347 EVEELIGRNLAL-------LLAPSRRPHFQDYLRQVQQTGEAQGRLYLTHRNGSERIIAY 399 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + G + + + K+ + Q SILE+ DGI ++ EG + Sbjct: 400 RNKLIEI--AGREPYVLGFGVDISEQVQAEGKLRNLIDQSNSILESVGDGIYGLDLEGRV 457 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-----PSVMNHYLTEILSLDLRQTLEKIT 529 N A +++ GY ++L + + + + + + Sbjct: 458 TVVNPAAAQMLGYKPHELLGRNMHEVIHHTRADGSAHDFHDCAVMRAIDALDTMRVSDEV 517 Query: 530 LGSTKEEKLLSLRIII----------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 K+ + + + + + D +E +Q Sbjct: 518 FWR-KDGTCFPVEYVARPQIEASEDGIRPGRAVGVVVAFADTTERRQL------------ 564 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K +F++ VSHE+RTPLT++ + + + + + ++ Sbjct: 565 --DRMKDEFISTVSHELRTPLTSLRAAL-GLVTGGALATRPDKMKQMLQIAIANTDRLVR 621 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 +VND+LDI +I SG L + ++ + A + Q + + R +N R+ A Sbjct: 622 LVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVE--SNDVRVWA 679 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D + Q N++SNAI F+P G+I ++ + +E + D G G+ LE + Sbjct: 680 DPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIFER 739 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 F Q+ S GTGLGL + ++++ + G+ + S P KG P +H Sbjct: 740 FQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTKAVAH 795 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 27/382 (7%), Positives = 91/382 (23%), Gaps = 16/382 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKT 147 D G + + G M+G + + + + + ++ + + Sbjct: 201 DTAGRIVRFNRTCEAVSGYDLQSMVGRYVWEKLIPENEVAESVSTFERIVNGSSPTSFEN 260 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ I +A + + + GI + + + ++ L Sbjct: 261 HWLRRDGSLRR--IAWSATALVDPQGQTNFIISTGI--DVTEQREAEDTLRESEARYRQL 316 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E G + + S ++ + L + Sbjct: 317 IEGSLGMVCTHDLEGKLLSVNLHGAQSVGYEVEELIGRNLALLLAPSRRPHFQDYLRQVQ 376 Query: 266 ESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEGENL 321 ++ + N ++ ++ +E + + Sbjct: 377 QTGEAQGRLYLTHRNGSERIIAYRNKLIEIAGREPYVLGFGVDISEQVQAEGKLRNLIDQ 436 Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + ++ + + G + NP+ + YK + + + + Sbjct: 437 SNSILESVGDGIYGLDLEGRVTVVNPAAAQMLGYKPHELL-GRNMHEVIHHTRADGSAHD 495 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAM--TFIPFEKANQFPENMPQNGIEPEDV 438 + R+ + P +A++ + Sbjct: 496 FHDCAVMRAIDALDTMRVSDEVFWRKDGTCFPVEYVARPQIEASEDGIRPGRAVGVVVAF 555 Query: 439 DTRINKRKMEIEVMQLCSILEA 460 +R+++ + S + Sbjct: 556 ADTTERRQLDRMKDEFISTVSH 577 Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 67/189 (35%), Gaps = 7/189 (3%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 A+ + + +F N ++ + + +E + ++L+ + + + Sbjct: 144 ALQVLARQVTTRFELNARVRHMDRAGRSRLRVESALSVERNFVSAMLDTVGALVLVRDTA 203 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 G I+ NR + GY ++ ++ + + +N + I++ + E L Sbjct: 204 GRIVRFNRTCEAVSGYDLQSMVGRYVWEKLIPENEVAESVSTFERIVNGSSPTSFENHWL 263 Query: 531 GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + ++ P T D++E ++ ++ L ++ + Sbjct: 264 RRDGSLRRIAWSATALVDPQGQTNFIISTGIDVTEQREAEDTL---RESEARYRQLIEGS 320 Query: 589 LARV-SHEI 596 L V +H++ Sbjct: 321 LGMVCTHDL 329 Score = 67.7 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 16/254 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKR 139 + +D G + ++ + +G +++G + +V D + + + Sbjct: 448 IYGLDLEGRVTVVNPAAAQMLGYKPHELLGRNMHEVIHHTRADGSAHDFHDCAVMRAIDA 507 Query: 140 QNTWY-GKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRAL 196 +T W +GT P++ A P S + G R G+V + R L Sbjct: 508 LDTMRVSDEVFWRKDGTCF--PVEYVARPQIEASEDGIRPG-RAVGVVVAFADTTERRQL 564 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + D+ S + + + + + + +K+ + + D L Sbjct: 565 DRMKDEFISTVSHELRTPLTSLRAALGLVTG---GALATRPDKMKQMLQIAIANTDRLVR 621 Query: 257 EKYPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 +L E S + ++ K + + N + A Sbjct: 622 LVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVESNDVRVWADP 681 Query: 316 DEGENLTPETVDKC 329 D + Sbjct: 682 DRILQALSNLISNA 695 >gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5] gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5] Length = 609 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 160/377 (42%), Gaps = 26/377 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L SIL SDG+ + G ++ NR ++ G E++ Sbjct: 250 REALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSL 309 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556 L E L+ + + + + + +R+ + Sbjct: 310 LGLEQSES------EALARGEGHDSKLLEITPREGGEPFMMRVTFTPIHRREIGITGTIA 363 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E ++ + + + +F+A VSHE+RTPLT I ++E +++ Sbjct: 364 VLQDVTEQEKLE--------------ASRREFVANVSHELRTPLTTIKSYTEALEDGAL- 408 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + I ++ +V DLL +S+++S + LH E + E + + Sbjct: 409 -EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFS 467 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +K I + + D + Q+ N++SNA+ +TP GG I + + T Sbjct: 468 FQMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGM 527 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V+DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S Sbjct: 528 LSLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQS 587 Query: 797 TPAKGTLIEIIFPLYDT 813 KGT + PL D Sbjct: 588 ELEKGTTVTFTLPLDDE 604 Score = 46.2 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 7/147 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ + +G ++ G D+ +L ++ + + L R K Sbjct: 277 TDEAGRVILMNRRAGEMLGVEGEELAGH---DIVSLLGLEQSES--EALARGEGHDSKLL 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + PI+ R +G ++ A + SH Sbjct: 332 EITPREGGEPFMMRVTFTPIHRREIGITGT--IAVLQDVTEQEKLEASRREFVANVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235 E + + + R Sbjct: 390 RTPLTTIKSYTEALEDGALEDKQMGPR 416 Score = 40.0 bits (92), Expect = 1.8, Method: Composition-based stats. Identities = 12/151 (7%), Positives = 31/151 (20%), Gaps = 16/151 (10%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 + +E + + G + N + + +++ Sbjct: 246 TSRLREALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEG-EELAGH 304 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 +S L S+ L R + L M + Sbjct: 305 DIVSLLGLEQSESEA-------LARGEGHDSKL---LEITPREGGEPFMMRVTFTPIHRR 354 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + K+E + Sbjct: 355 EIGITGTIAVLQDVTEQ----EKLEASRREF 381 >gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea phototrophica DFL-43] Length = 795 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 133/679 (19%), Positives = 250/679 (36%), Gaps = 56/679 (8%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 +NR R I + + S + Sbjct: 117 ARLNRALGAMPEDQGRYLLVIDAEARIFAATAGGNHLVGTVLSSLLSESSPLWLFGERAG 176 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + + L + L + + + S L Sbjct: 177 VQSIRFDGEDSLAALTRLPDGAGALLSLTPVKTMNDAWRQSVSVNVTLFIATSSILLVIL 236 Query: 304 -----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSV 357 + + E + + + + + Y + S + K Sbjct: 237 YAYFSQAGRAQEADSIYHESQRRVDMALSRGRCGLWDWDMARGRLYWSRSMYEILGLKPR 296 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 D + G S L D+ + + + L ++ + L M Sbjct: 297 DTVISFGEASQL----VHPDDGDLYEIARKVASGDIKQVD-HLFRMRHANGHYLWMRARA 351 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + GI + + +++ +L +E+TS+ + +R+ ++ Sbjct: 352 QVV-DPTSAETHLIGIAMDVTEQHRLQQRTMEADQRLFDAIESTSEAFVLWDRDERLVLW 410 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N+ ++ G P + + + + + L++ + + + + Sbjct: 411 NKHYQEIHGLPADILAPGTPRPVV---EKAATRPVVERRLAVPCARDSAQTFEVQLGDGR 467 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK---------------------- 575 L + + DI+ K+ + +L ++ Sbjct: 468 WLQINERKTR---DGGLVSVGTDITPLKRNQERLRDSEKRLMATIGDLTSSQAELKRKAA 524 Query: 576 -------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + AE S KS+FLA +SHE+RTPL AIIGFSEV++ + FGPLG+ + Sbjct: 525 ELSELNMDYQVETERAEAASRAKSEFLANMSHELRTPLNAIIGFSEVLQARMFGPLGSDK 584 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y EYA+ I SG +L ++ND+LD++KIE+G+M L E V L + E + LV + A +K Sbjct: 585 YGEYADDIHNSGIHLLTVINDILDMAKIEAGQMQLEREDVDLAPLLKETLRLVAIQAEQK 644 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + + + + AD R++KQI LN+LSNA+ FT GG+I++ T + V L + Sbjct: 645 DIRVDQRISAKL-SLNADRRAMKQILLNLLSNAVKFTEPGGKILVRARKT-SCAVTLTIE 702 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ L + +PF Q+ N G+GLGL +++++ + + G + S GT Sbjct: 703 DTGIGIPKALLNRIGQPFEQVQNQFSKSTGGSGLGLAISRSLAELHGGAMKVRSIEGMGT 762 Query: 803 LIEIIFPL-YDTSHPHDCI 820 ++ + P+ P I Sbjct: 763 IVSVRVPINCPEDQPSSMI 781 >gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 690 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 125/545 (22%), Positives = 224/545 (41%), Gaps = 27/545 (4%) Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 ++Q L ++ + E + + P +S G Y Sbjct: 15 LREQQMTALLALTRSTTEAPDMQTALIRALELIAATGRWSYGEVWQP-----HSEGGTLY 69 Query: 344 ANPSFLL----LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-- 397 S+ L + ++ + LL + +N P L ++ Sbjct: 70 RVASWPREAHTLLAFATLRAVLRITPGEGLLGWAWQNQHNLWLP-DLAAVEQDVTTFQQV 128 Query: 398 ----ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKRKMEI 449 A L I+ + + + E + G+ + + + Sbjct: 129 GLSSALLLPIRLHEQPIALLVLFGREVQPLDAALLHLIGMATAQVGAALKRLQQQAAIAE 188 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L +L+A D + I + + +L N A ++FGYP + L P T + Sbjct: 189 RERLLHLMLDAAPDAMLIADGDEHVLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTY 248 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQE 567 + + ++ + + ++ + D++E +Q Sbjct: 249 FSLIAD-QRQGPTLDATIEVHARRRDGSEFPSEFGLAAWRSLQGEYFTCVVRDVTERQQN 307 Query: 568 KNKLSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L + E+ + K++FLA +SHE+RTPL I+ +E + +G L N R + Sbjct: 308 QAALRTIEASTELERVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYG-LLNDRQQQ 366 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + SG +L IVND+LD+ KIE+GK+ L EPV ++ + ++ +V+ A KRI Sbjct: 367 VLDVVTESGQHLLGIVNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQ 426 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDT 744 I + + + I AD R +KQI +N+LSNA+ FTP GG++ + + + V L V DT Sbjct: 427 IASQIDHQVDLIEADPRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDT 486 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + +L + +PF Q+ R EGTGLGL L + + + G I STP G+ Sbjct: 487 GIGIAHTDLPRLFRPFVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRIQSTPGTGSCF 546 Query: 805 EIIFP 809 I+ P Sbjct: 547 TIMLP 551 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 33/335 (9%), Positives = 84/335 (25%), Gaps = 20/335 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148 D ++ + + G A + +G+ + + + I D + Sbjct: 208 DGDEHVLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTYFSLIADQRQGPTLDATIEV 267 Query: 149 L-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--FS 205 +G+ P + S E+ +V +A + ++ Sbjct: 268 HARRRDGS--EFPSEFGLAAWRSLQGEYFT----CVVRDVTERQQNQAALRTIEASTELE 321 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++K + + + V L + + TE L Sbjct: 322 RVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYGLLNDRQQQVLDVVTESGQHLLGI 381 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE- 324 + + + + + ++ S +++ +++ D +L Sbjct: 382 VNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQIASQIDHQVDLIEAD 441 Query: 325 -------TVDKCPIPF-FVYSHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 V+ F G + Y SV+D I + L + Sbjct: 442 PRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDTGIGIAHTDLPRLFRP 501 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + +A A L + Sbjct: 502 FVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRI 536 >gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 582 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 178/395 (45%), Gaps = 22/395 (5%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + + R EI+ +L +++E G+ I+ G I Sbjct: 204 AARVPDGEYNEAGMLVRSINRLARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 263 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 NRA F D L +P+ L + ++ + ++T+G + Sbjct: 264 SLINRAFQTQFHLDPSDCLHRPYADVLPHGDIVRFIDDI--FITETTMRRHMRLTIGIER 321 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + II + HDI+E K+ + + DF+A VSH Sbjct: 322 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 367 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E++TP+T+I GF+E + + + I + + +V +LLD+SKIE Sbjct: 368 ELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESERLQTLVEELLDLSKIEQHG 425 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L E V + + ++EA ++ + A EK+I + + + I D +KQI LN+L+N Sbjct: 426 FQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIRGDRNRMKQILLNLLAN 484 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI +TP G++ + + +EV++ V+DTG+G+ E+ + + F ++ ++ GT Sbjct: 485 AITYTPEHGRVAVEAE-ETEKEVLIHVKDTGIGIEEKEIPRIFERFYRVDKARSRDSGGT 543 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + K +V+A+ G + S +GT+ I FP Sbjct: 544 GLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578 >gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus sp. Y412MC10] Length = 609 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 160/377 (42%), Gaps = 26/377 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L SIL SDG+ + G ++ NR ++ G E++ Sbjct: 250 REALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSL 309 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556 L E L+ + + + + + +R+ + Sbjct: 310 LGLEESES------EALARGEGHDSKLLEITPREGGEPFMMRVTFTPIHRREIGITGTIA 363 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D++E ++ + + + +F+A VSHE+RTPLT I ++E +++ Sbjct: 364 VLQDVTEQEKLE--------------ASRREFVANVSHELRTPLTTIKSYTEALEDGAL- 408 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + I ++ +V DLL +S+++S + LH E + E + + Sbjct: 409 -EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFS 467 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +K I + + D + Q+ N++SNA+ +TP GG I + + T Sbjct: 468 FQMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGM 527 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + L V+DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G + S Sbjct: 528 LSLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQS 587 Query: 797 TPAKGTLIEIIFPLYDT 813 KGT + PL D Sbjct: 588 ELEKGTTVTFTLPLDDE 604 Score = 45.8 bits (107), Expect = 0.031, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 7/147 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ + +G ++ G D+ +L ++ + + L R K Sbjct: 277 TDEAGRVILMNRRAGEMLGVEGEELAGH---DIVSLLGLEESES--EALARGEGHDSKLL 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + PI+ R +G ++ A + SH Sbjct: 332 EITPREGGEPFMMRVTFTPIHRREIGITGT--IAVLQDVTEQEKLEASRREFVANVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235 E + + + R Sbjct: 390 RTPLTTIKSYTEALEDGALEDKQMGPR 416 Score = 40.0 bits (92), Expect = 1.8, Method: Composition-based stats. Identities = 11/151 (7%), Positives = 30/151 (19%), Gaps = 16/151 (10%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 + +E + + G + N + + +++ Sbjct: 246 TSRLREALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEG-EELAGH 304 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 +S L + L R + L M + Sbjct: 305 DIVSLL-------GLEESESEALARGEGHDSKL---LEITPREGGEPFMMRVTFTPIHRR 354 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + K+E + Sbjct: 355 EIGITGTIAVLQDVTEQ----EKLEASRREF 381 >gi|163851983|ref|YP_001640026.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163663588|gb|ABY30955.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 846 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 176/783 (22%), Positives = 301/783 (38%), Gaps = 78/783 (9%) Query: 34 FETEKSKKENPCHD--SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 F++ +K + P D S + +S ++ +R W DA Sbjct: 137 FDSGPAKADPPPADVGSDVAKHEASSPSPVLSPAPEVE--------TAELPLRVIWRSDA 188 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G L +S P A + G ++ I+ + D L + T+ L Sbjct: 189 DGVLTHVSRTHPDL----AEALSGRSWAMLAADGVIEGA-ALTDALAGRRTFRTLPLL-- 241 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + G ++++ P +FSGF GF I+ + R + + ++ + ++ Sbjct: 242 VRGRAYEHALEVSGAPAGRSTDDFSGFGGFAIL----GERHARVMERAVEDEEDGPENLQ 297 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + E E S + +V L D L Sbjct: 298 EEPPVDETEAEAGLSVNEHAAFREVA-RVLGLRFAPDEDGDDAAPMPARL---------- 346 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 ++ LS E ++ P+ Sbjct: 347 ----------------------ESAPSGSVMPFPIPQGRLSEAETRARLALTELLESLPL 384 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 VY + +A+ +FL LT Y + + A GL+ L D I PV R + Sbjct: 385 GVLVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREIIGPVPFARPEG 443 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 +A + W + A + I + Sbjct: 444 GTVALLVDRAGLVWEGAQAEICLARAMPAAG-------------DIQLPAIPANAARLRA 490 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + +L++ DG+ ++ EG ++ N + ++L ++++ F + S + Sbjct: 491 EK---VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPESLSALET 547 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 +T+ + L LRI + Y ++ +I + Sbjct: 548 AVTDSRRSGTSEVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDEDVAPPAP 604 Query: 572 SHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + + K++ LARVS EIR L AI+G ++++ + RF R Y Sbjct: 605 VAEPARRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAERLEAYLR 664 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + SG + +++DL D+++I++G+ L F ++L+E V+ I+ Q A RI++RT Sbjct: 665 EVRLSGGRIAGLIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARDRIVLRT 724 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 S A N+P + AD RS++Q AL +L NAI T +GGQ+I+STT EV LRVRDTG GM Sbjct: 725 SLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGM 784 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 T EL A++PFG G+ G GL L KA+V+AN G+F I S +GTL+E++F Sbjct: 785 TEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGTLVEMLF 843 Query: 809 PLY 811 P Sbjct: 844 PAA 846 >gi|300868056|ref|ZP_07112694.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300333976|emb|CBN57872.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1224 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 102/437 (23%), Positives = 187/437 (42%), Gaps = 53/437 (12%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-- 487 + ++ + + + ++ SI E +GI +G +S N A++ ++GY Sbjct: 518 VGEMLANALERKRAEEALRQAEIKYRSIFENAVEGIFQSTADGRYISANPALAHIYGYSN 577 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 P E + + P+ +L + + + E + ++ + + Sbjct: 578 PEEMLAQLTDIGSQLYVDPNRRQEFLAAMETQNEILRFESEVYRR--DGSIIWISENARA 635 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + S T+ DIS+ K+ + A + AE + KS FLA +SHE+RTPL AI Sbjct: 636 VRASGGAISCYEGTVEDISDRKKAEVSCQLALEAAESANRAKSTFLANMSHELRTPLNAI 695 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG+SE++ + L +I + I +G +L ++ND+LDISKIE+G+M+++ E Sbjct: 696 IGYSEMLAEEAED-LAVKDFIPDLDKIRTAGKHLLSLINDILDISKIEAGRMDVYLENFD 754 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + + ++ Q + ++ N+ + AD+ ++QI LN+LSNA FT G Sbjct: 755 IPALIDGVVATAQPLVEKNGNTLKVLCPNSTGTMYADVTKMRQILLNLLSNAAKFTQEG- 813 Query: 724 QIIISTTHTSN-------------------------------------EEVILRVRDTGV 746 I ++ + + +I RV DTG+ Sbjct: 814 TITLTVERVKHEKLTSPEVNFIPEQSQGTLLGLLQNPDILSQFLIYDCDSLIFRVADTGI 873 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GM +L++ +PF Q S + GTGLGL +++ G + S +GT+ + Sbjct: 874 GMNPQQLKQLFQPFTQGDASTTRKYGGTGLGLAISQRFCQMMGGDIAVESALGEGTVFTV 933 Query: 807 IFP------LYDTSHPH 817 + P L + P Sbjct: 934 VLPSEFSDRLAENPEPE 950 Score = 99.3 bits (246), Expect = 3e-18, Method: Composition-based stats. Identities = 39/367 (10%), Positives = 105/367 (28%), Gaps = 32/367 (8%) Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 H L+ L + + Q+ +N + ++ + Sbjct: 3 PHLKRQLQELGLSLESPPLGAQQWQQFLEQVNDRY-------SRQEQELIDAKPLDAEAE 55 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366 A + +D + G + Y NP L + ++ A L Sbjct: 56 ALDYEASGLWEVDGLSAVLDSLGVGLCTLDTRGYVLYINPEGERLLGWG-FSELAGAPLL 114 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA----- 421 + + + + AR + ++ + Sbjct: 115 ARIGVTLGKAGTRVQGEGGNKHEGASESEIKARKSQLSLREAIAIGQACSNSDGKFLCQD 174 Query: 422 -----------NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + + + + ++E + L ++ E+T GI ++R Sbjct: 175 GTILSVCYFFNPIVGGDGSGVLVFFDIAERQRLMGELERSLSMLQAVFESTDAGILALDR 234 Query: 471 EGIILSTNRAVSKLFGYPVEDIL------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 +G + + N+ +++G +L P + +L + L Sbjct: 235 QGKVSNFNQKFVEMWGLVDNAMLLAQPGNGPPTALPFVIRQLKYPQAFLKTAIKLSAEPD 294 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + L K+ ++L + ++ D++E KQ + L + + + ++ Sbjct: 295 AQINNLLEFKDGRILEVSSHPSQVGKKIVGRVWIFRDVTERKQVEKDLEYRIQFEQLITN 354 Query: 584 HKSDFLA 590 + F++ Sbjct: 355 LSTHFIS 361 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 10/232 (4%) Query: 33 GFETEKSKK--ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNI 89 GFE + S K F+ N + + I V + Sbjct: 497 GFEAQPSPKTRSPEILTLFKMVGEMLANALERKRAEEALRQAEIKYRSIFENAVEGIFQS 556 Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQN-TWYGK 146 A G + L G + + +L D+ L++DPN ++ QN + Sbjct: 557 TADGRYISANPALAHIYGYSNPEEMLAQLTDIGSQLYVDPNRRQEFLAAMETQNEILRFE 616 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + ++ +G+ + I A + + S + G V + + Sbjct: 617 SEVYRRDGSI--IWISENARAVRASGGAISCYEG--TVEDISDRKKAEVSCQLALEAAES 672 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + K + + + + L D Sbjct: 673 ANRAKSTFLANMSHELRTPLNAIIGYSEMLAEEAEDLAVKDFIPDLDKIRTA 724 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 12/150 (8%), Positives = 41/150 (27%), Gaps = 8/150 (5%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + E + F + G ANP+ + Y + +++ Sbjct: 527 ERKRAEEALRQAEIKYRSIFENAVEGIFQSTADGRYISANPALAHIYGYSNPEEM--LAQ 584 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L+ + + N + + + + + + + + ++ Sbjct: 585 LTDIGSQLYVDPNRRQEFLAAMETQNEILRFESE---VYRRDGSIIWISENARAVRASGG 641 Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQ 453 G + D + + ++ +E + Sbjct: 642 AISCYEGTVEDISDRKKAEVSCQLALEAAE 671 >gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 703 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 174/393 (44%), Gaps = 24/393 (6%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R+ +K E + + E SD I+ E IIL + A L GY E+IL + Sbjct: 156 QRVLVKKFEKSEERYRLLAEYASDLISRHTTENIILYASPASRSLLGYEPEEILGRSGYE 215 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCY 554 FL + L E ++ + + K+ + + ++ + Sbjct: 216 FLHPKDMDRVGDNLREAIARLEPRLFQ--YRMRRKDGRYVWFESTVRPVQNMETGKVQEV 273 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+E K+ + +L AK+ AE KS FLA VSHEIRTPL IIG +++ + Sbjct: 274 VFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVSHEIRTPLHGIIGMIDLLLDTA 333 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 Y I L+ I+ND+LD SK+E+G++ L L V++ ++L Sbjct: 334 L----TEEQASYGRTIGELSRLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNL 389 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +++ + +K + I +P + D ++Q+ +N+ NA+ FT G ++ + S Sbjct: 390 LRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLGGNAVKFTEKG-KVALRIAMDS 448 Query: 734 NEE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 E + + DTG+G+T+ + +PF Q S R GTGLGL ++K Sbjct: 449 RAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFSQADMSTARRYGGTGLGLAISK 508 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +V+ G+ S P GT PL ++S Sbjct: 509 RLVELMGGEIGFRSIPGLGTTFWFTMPLLESSA 541 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 47/486 (9%), Positives = 120/486 (24%), Gaps = 42/486 (8%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153 + S +G +++G + +D +++ + + R + + + Sbjct: 190 ILYASPASRSLLGYEPEEILGRSGYEFLHPKDMDRVGDNLREAIARLEPRLFQYRMRRKD 249 Query: 154 GTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G YV + P+ + + + ++ K Sbjct: 250 GR--YVWFESTVRPVQNMETGKVQEV--VFVTRDITERKRAEEELHMAKERAEAADRAKS 305 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + + P H + L + L S + + Sbjct: 306 AFLATVSHEIRT------PLHGIIGMIDLLLDTALTEEQASYGRTIGELSRLLSSIINDI 359 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 DF + + + L+ + L R+ + + P + PI Sbjct: 360 LDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREVPPFLRGDPIR 419 Query: 333 ---FFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + GN L + + + + ++ D + Sbjct: 420 LRQVLINLGGNAVKFTEKGKVALRIAMDSRAEQSDPVNEV-ARFLRFEICDTGIGITDEV 478 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN----MPQNGIEPEDVDTRI 442 + A + T + L + E +P G + Sbjct: 479 APRLFQPFS-QADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGTTFWFTMPLL 537 Query: 443 N--KRKMEIEVMQLCSILEATSDGIAIINREGIILS-----TNRAVSKL----FGYPVED 491 + E Q + L + E IL N+ ++ + FG P+ Sbjct: 538 ESSAQAAEDSRAQEKADL-LLPEL-----PEKRILLVEDNPVNQKLASIQLKKFGLPLLA 591 Query: 492 I-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + + + + S++ T E + + + + + + + + Sbjct: 592 VSNGREAVEAVRREKYSLILMDCQMPEMDGFEATREIRRIEAEQGGHVPIVAMTARAMRG 651 Query: 551 SSCYSL 556 L Sbjct: 652 DREECL 657 >gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 898 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 24/384 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG-----IILSTNRAVSKLFGYP 488 +R++ + + E + G I + +G ++ N A L G Sbjct: 377 TSLVQRERELIESDKRYRLLFENMTSGFALNAMIYDEQGNPMDYRFITVNPAFEHLTGAK 436 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +DI+ K + + Y + + + + S Sbjct: 437 AKDIIGKTVREVMTGTEQHWIETYGRVARTG---EPIAYENYAQDI-GRYFS---TYAFC 489 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 P +++ +DI+E + + +L+ AK AE + KSDFLA +SHEIRTP+ ++G ++ Sbjct: 490 PEPGLFAVVFNDITERFKSQQELAEAKDAAEAANQAKSDFLANMSHEIRTPMNGVVGLTQ 549 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ +EY + I+ S + +L ++ND+LD+SKIESGK+ L F SL +A+ Sbjct: 550 LLRFTELTT----EQVEYLDSIETSADNLLSLINDILDLSKIESGKVELEFTDFSLRKAI 605 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII 726 + I + EK + I+ A ++P + D VKQ+ +N+L NAI FT G I Sbjct: 606 QDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLRVKQVFINLLGNAIKFTERGTITIA 665 Query: 727 ISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 +S + + + V DTG+GM+ L+K PF Q +S R GTGLGL + + + Sbjct: 666 VSILERESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSICRKL 725 Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808 + G + S P G+ + Sbjct: 726 AELMGGAITVESIPGSGSSFHLDL 749 >gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 833 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 119/524 (22%), Positives = 203/524 (38%), Gaps = 19/524 (3%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352 E + LS + E + + ++ F +Y L N + + Sbjct: 41 RAMVERSQELSSKELSEARDKATEAQRRLVDAIESISEGFSLYDADDKLVIYNRRYRDMH 100 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 S++ + T+L S + +A R + Sbjct: 101 GTASINVVNQGVSFETILRNATASGEIRDAEGRVEAWIEQRLAQHRDPKGTHVQRRSDGR 160 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS--DGIAIINR 470 I K + + D + ++ ++ +L I EA I + Sbjct: 161 WIQINERKTDDGGT----VATYTDITDVKKAEQAIQESEQRLRVIAEAAPMAVAIVTFD- 215 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +GII NR S++F L P ++ + L Sbjct: 216 DGIIRYANRRFSEMFELEGSSALGLQAKTLYA--DPQHRERFIGALTEHG--HVEGMEML 271 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + I +++ F ++ + DIS+ K+ + +L A +E+ + KSDF Sbjct: 272 LKRVGGEEFWALIASQRVEFEGRPAMINGLADISDRKRMEGELHKAIWASEQATRAKSDF 331 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +A +SHE+RTPL AIIG+SE++ + I +G +L +++++LD+S Sbjct: 332 VANMSHELRTPLNAIIGYSEILFEDAQSAGRESEMAD-LRKIQDAGKHLLGLIDNILDLS 390 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 KIE+GKM L+ E L + + V A + + + A+ I I +DL V+Q Sbjct: 391 KIEAGKMTLYLETFELRPMIDSVAATVTPLAKKTGNALVANCADEIGTIHSDLTKVRQTL 450 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N+LSNA FT G I ++ +N E + +VRDTG+GMT + K + F Q + Sbjct: 451 FNLLSNACKFT-RNGTITLTALRDTNAAGEWIEFQVRDTGIGMTPDQQAKVFEAFTQADD 509 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S GTGLGL + K+ G + S KGT + P Sbjct: 510 STTRVYGGTGLGLAITKSFCRLMGGDVTLTSEAGKGTAFVVRLP 553 Score = 42.3 bits (98), Expect = 0.38, Method: Composition-based stats. Identities = 24/302 (7%), Positives = 71/302 (23%), Gaps = 17/302 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA L + G + ++ + + + + + I D R W + Sbjct: 84 DADDKLVIYNRRYRDMHGTASINVVNQGVSFETILRNATASGEIRDAEGRVEAWIEQRLA 143 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + +V I R+ + +++ + E Sbjct: 144 QHRDPKGTHVQRRSDGRWIQINERKTDDGGTVATYTDITDVKKAEQAIQESEQRLRVIAE 203 Query: 210 IKK---GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + +++ + L + D + LT Sbjct: 204 AAPMAVAIVTFDDGIIRYANRRFSEMFELEGSSALGLQAKTLYADPQHRERFIGALTEHG 263 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + ++ + + + ++ S + + Sbjct: 264 HVEGMEMLLKRVGGEEFWA--LIASQRVEFEGRPAMINGLADISDRKRMEGELHKA---- 317 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 +++ A F+ ++ + G S +L S + L Sbjct: 318 --------IWASEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSAGRESEMADL 369 Query: 387 YR 388 + Sbjct: 370 RK 371 >gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC 33406] Length = 1222 Score = 352 bits (903), Expect = 2e-94, Method: Composition-based stats. Identities = 142/778 (18%), Positives = 271/778 (34%), Gaps = 76/778 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTT 148 D G ++ ++ + +++ + D+ + H+ ++L + +T Sbjct: 179 DLDGKIQFVNRAWKDILQYSDEEILKLNFRDIIAKEQVGVTMEHLNNILAGKKDDKFETV 238 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----------- 197 G N+ V + + + FRG I H N Sbjct: 239 FTSKNGRNIQVICSVN---VRYEKEKPVSFRG--IFHDNTEHMRAERAQNLYYKISTLAI 293 Query: 198 --KRLDKKFSHLHEIKKGHSSVEKE-----------------KYDIFSQQSPPPHLRMKN 238 RLD ++H+ + +V + + + Sbjct: 294 NSDRLDSLLDNIHKELRTIIAVNNFHVALYDRDHNYLNFPYYVDENIGPKPISMKRIVGK 353 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL------ 292 ++ + + + + + L + L + + + + G + Sbjct: 354 GLTEYSLFNEEPTFLYEEDINKLSEAGAIELLGPTPKIWLGVPLRLENRTIGVICVKSHS 413 Query: 293 ----------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342 + S + + + + + Sbjct: 414 DRNKYKRRHVELLDFISGQIALVIERKRNEEQIIDKTARLNAIFESSSHLIWSVNRKRGL 473 Query: 343 ------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 YAN F KY ++ D + + L D + + Sbjct: 474 TSFNQNYANAIFRKYQKYPTIYDEGVTKEVLVLSDPEFHDSIDKKYKDAF---NGQPQHF 530 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 A +GI + + + + ++ + + Sbjct: 531 EACNTN---QNGEIFWRETYLNPIFLPDGRIDEVSGISHDITEKKQWEITIQESEEKFRN 587 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I E+ D + G I + + +L GY E+I+ K + F V + + E+ Sbjct: 588 IFESFQDIYYRTDLSGYITMISPSGCELSGYTQEEIIGKHISEFFTTPKQQV--NLIREV 645 Query: 517 LSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 L + E E + + ++R+I DI+ K+ +L HA Sbjct: 646 LKTGRVKNYETNVNIKGGESIQSISNIRLIYNNEGKPIGVDGVARDITFLKKASQELYHA 705 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+IAEK K +FLA +SHEIRTP+ +IG +++ +Y I +S Sbjct: 706 KEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNETPLM----EEQRKYVQTIKKSS 761 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+I+ND+LD+SKIE+GKM L P+S+++ V + +L A K I + S +N+ Sbjct: 762 ETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQATLKNIDLLYSIDSNV 821 Query: 695 PRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTN 750 P++ LAD + QI N+ SNAI FT G +I IS + ++ + + DTG+G+ Sbjct: 822 PKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLVNKIRVNISDTGIGIAQ 881 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L F Q+ NS GTGLGL ++K + G+ + + KG++ F Sbjct: 882 DKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGVQTEANKGSVFWFTF 939 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 101/311 (32%), Gaps = 14/311 (4%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356 E + + E + E +K + + G + YAN +FL + ++ Sbjct: 13 SRDELIQQVKELQIINANQRPEKILQEAFEKINLLVITIDQDGLIVYANEAFLEVIGWEK 72 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + P N L + + + + + + F Sbjct: 73 QRLLGEN---WKEFLEPGKDKNKEEHIYTLIKKQGFIDQLKRKFLSKEGD---YRTIKFN 126 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + I + D + R ++ QL + E +D I + + +G I Sbjct: 127 VVIHHPIGNDVHLTTLIGEDITDKKKVIRALKDSNDQLQDLFENANDLIQVFDLDGKIQF 186 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 NRA + Y E+IL+ F + + V +L IL+ + T+ ++K Sbjct: 187 VNRAWKDILQYSDEEILKLNFRDIIAKEQVGVTMEHLNNILAGKK--DDKFETVFTSKNG 244 Query: 537 KLLSLRIII-KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLAR 591 + + + + + + HD +E + + + KI+ S L Sbjct: 245 RNIQVICSVNVRYEKEKPVSFRGIFHDNTEHMRAERAQNLYYKISTLAINSDRLDSLLDN 304 Query: 592 VSHEIRTPLTA 602 + E+RT + Sbjct: 305 IHKELRTIIAV 315 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 70/611 (11%), Positives = 162/611 (26%), Gaps = 69/611 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQ---NTWY 144 ID G + +E + IG +++G + + + HI L+K+Q + Sbjct: 51 IDQDGLIVYANEAFLEVIGWEKQRLLGENWKEFLEPGKDKNKEEHIYTLIKKQGFIDQLK 110 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI------VHVNRVDNDPRALGK 198 K + + + + PI + + G I + + ND Sbjct: 111 RKFLSKEGDYRTIKFNVVIH-HPIGNDVH-LTTLIGEDITDKKKVIRALKDSNDQLQDLF 168 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------- 249 + ++ V + DI + + + Sbjct: 169 ENANDLIQVFDLDGKIQFVNRAWKDILQYSDEEILKLNFRDIIAKEQVGVTMEHLNNILA 228 Query: 250 -----KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFE 301 K + + T K S+ + + + ++ + Sbjct: 229 GKKDDKFETVFTSKNGRNIQVICSVNVRYEKEKPVSFRGIFHDNTEHMRAERAQNLYYKI 288 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL------------ 349 N L + D + +Y Y N + Sbjct: 289 STLAINSDRLDSLLDNIHKELRTIIAVNNFHVALYDRD-HNYLNFPYYVDENIGPKPISM 347 Query: 350 -LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + + + T L ++ + + L ++ Sbjct: 348 KRIVGKG-LTEYSLFNEEPTFLYEEDINKLSEAGAIELL----GPTPKIWLGVPLRLENR 402 Query: 409 NSLAMTFIPFEK-----ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + +G ++ + N+ ++ + +L +I E++S Sbjct: 403 TIGVICVKSHSDRNKYKRRHVELLDFISGQIALVIERKRNEEQIIDKTARLNAIFESSSH 462 Query: 464 GIAIINREGIILSTNRAVS-KLFG----YPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516 I +NR+ + S N+ + +F YP K V + ++ + Sbjct: 463 LIWSVNRKRGLTSFNQNYANAIFRKYQKYPTIYDEGVTKEVLVLSDPEFHDSIDKKYKDA 522 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574 Q E E + LP S HDI+E KQ + + + Sbjct: 523 F-NGQPQHFEACNTNQNGEIFWRETYLNPIFLPDGRIDEVSGISHDITEKKQWEITIQES 581 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 ++ D RT L+ I + G ++ + + Sbjct: 582 EEKFRNIFESFQDIYY------RTDLSGYITMISPSGCELSGYTQEEIIGKHISEFFTTP 635 Query: 635 NLVLDIVNDLL 645 ++++ ++L Sbjct: 636 KQQVNLIREVL 646 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 5/139 (3%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + D GY+ IS + G ++IG + + N I ++LK + Sbjct: 597 YRTDLSGYITMISPSGCELSGYTQEEIIGKHISEFFTTPK-QQVNLIREVLKTGRVKNYE 655 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T + G ++ ++ IY+ + G G + + Sbjct: 656 TNVNIKGGESIQSISNIRL--IYNNEGKPIGVDG--VARDITFLKKASQELYHAKEIAEK 711 Query: 207 LHEIKKGHSSVEKEKYDIF 225 ++K+ + + Sbjct: 712 SLKVKENFLANMSHEIRTP 730 >gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1027 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 123/633 (19%), Positives = 240/633 (37%), Gaps = 35/633 (5%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + L IK + +R ++ T + A+ + + Sbjct: 242 HRDRLLARIKMIGLAALLLAGSGVFWMGRVLFVRPLQRLKERTTHLANGEVRDLLNEVRR 301 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + F + L + + + E+ H + + L Sbjct: 302 RVMVRELQELTDQFDVMALQVSSARTSLEEKVHERTAQLEWELEERHKTEH-RLRQVLTL 360 Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +D G + N + YK+V + L ++ +L ++ Sbjct: 361 QTAILDSANSSIISTDRTGIVQTFNKGAERMLGYKAVAVVGQ-YTLDMFYNSNELRQHSL 419 Query: 381 IKPVMLYRSDRTCIA----------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 L + I R I + + + N + Sbjct: 420 QLSATLDKRVDPGIESLFVLAREGKVDEREWMILHQDGHQVPVLMTVTPIYNSSGLLVGY 479 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFG 486 + E + + +++ +L L++ G + + + NR ++FG Sbjct: 480 LNMGTEISERKRLAAELKETNWRLQRALDSAQAGTFYYAVVHDH----MQWNRRALEMFG 535 Query: 487 YPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEE--KLLSL 541 + + + ++ E+L+ +TL+ T+ +E +++ Sbjct: 536 LNDATFNGHLQDWLQRVVAVDRHRIDTLFAEVLATPNVETLDISYTILRQGDEAQRVIRT 595 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + I + P S DI+E Q + L A++ AE+ S KSDFLA +SHEIRTP Sbjct: 596 QGWIHRDPHGKATHLSGLFLDITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTP 655 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + A+IG S+V+ NP Y + R+ + +LD++N +LD+SKIESG+ L Sbjct: 656 MNAVIGLSDVLAETPL----NPEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIE 711 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 P L + S++++ A +K + + +P ++ D ++QI +N++ NAI F Sbjct: 712 RPFDLSDMAHGVCSVLRVQAEQKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKF 771 Query: 719 TPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 T G + +S + + + D+GVG+ ++E+ + F Q+ +S R G+GLG Sbjct: 772 TEQGF-VKVSVQARDQQRTLWFGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLG 830 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L ++K +V G + S +G+L PL Sbjct: 831 LAISKQLVGLMGGHIGVESRLGEGSLFYFSLPL 863 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 28/254 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNNHIG 134 D G ++ ++ + +G A ++G +S L + I Sbjct: 375 TDRTGIVQTFNKGAERMLGYKAVAVVGQYTLDMFYNSNELRQHSLQLSATLDKRVDPGIE 434 Query: 135 DLL---KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L + + + +G VP+ + PIY+ + G+ G R Sbjct: 435 SLFVLAREGKVDEREWMILHQDGHQ--VPVLMTVTPIYNSSGLLVGYLNMGTEISERKRL 492 Query: 192 DPR------ALGKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 L + LD + + H + ++F + +++ + + Sbjct: 493 AAELKETNWRLQRALDSAQAGTFYYAVVHDHMQWNRRALEMFGLNDATFNGHLQDWLQRV 552 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 H+ D L E + E+ + Q + ++ ++ Sbjct: 553 VAVDRHRIDTLFAEVLA-TPNVETLDISYTILRQGDEAQRVIRTQGWIHRDPHGKATHLS 611 Query: 304 SHRNHPSLSAYFDE 317 + + Sbjct: 612 GLFLDITEQMQAQQ 625 >gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 885 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 123/714 (17%), Positives = 245/714 (34%), Gaps = 76/714 (10%) Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 +T+G A +M+ + +++ +L D L + I G + + Sbjct: 234 RTLG--ATEMLSIPWDEITVLLRDDRRIGDNAYLADSLPFRD------IAGEHYML---- 281 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 +P+ + E G G +D KRL + L + ++V Sbjct: 282 --VPVRTATGEICGLLTVG--------DDDPKARKRLTETAPLLELLASQAAAVL----- 326 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 ++ + ++ + T + + + + L Sbjct: 327 ----ENAALQNTLAQRIEATTAEMGRTAEDAMRARTRAESMYQIVRALSGTLEPQPLLDQ 382 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 Q + S D T + L Sbjct: 383 ALLLIAQATQAERGGIMLIDHKNGRLAFSTNLDRNITRTE--------AISLERGQGL-- 432 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 + ++++ I S + + D L Sbjct: 433 ----AGWVVEHRAPVIIPNTAEDSRWMVRTDYDKKGRSALAVPMEQDGRVAGV-IVLINS 487 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEA 460 + N + F+ R + +E ++ +I+ + Sbjct: 488 RINHFTQEHIQFVQVIGDQVMTMLSNVQLYRATTEQARRLSQALEQREEEVSRSLAIVRS 547 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 DG+ + +R G I N A +L + L KP + Sbjct: 548 IGDGVVVGDRVGRIRLINPAAEQLLNIEAAEWLGKPLMSLPGAPESEPRL--------TE 599 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + G + + + HDI+ +E Sbjct: 600 KQTYQQFELSGRMIRASSTPVFTSQSEWL---GSVVVYHDIT--------------ASEL 642 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 K++F+A SHE+RTPLT+I G+ +++ GPL + ++ + + + + I Sbjct: 643 ADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLT-EQQRQFLSVVKNNIERLNAI 701 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +NDLLD+S+IESGK+ L +P++LDE + + + + K+I + +++P ++AD Sbjct: 702 LNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMIAD 761 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++QI N++SNA +T GG+I + + + V L V+D+GVG+ + + F Sbjct: 762 PERMRQIVTNLISNAYKYTRDGGRIDVVVS-NGGDSVTLAVKDSGVGIAADDQKHIFTRF 820 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + N + + GTGLGL + K++V+ + GK + S +GT + P+ S Sbjct: 821 FRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLPVGGDS 874 >gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 2654 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 119/751 (15%), Positives = 249/751 (33%), Gaps = 52/751 (6%) Query: 98 ISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT--TLWPI 152 +++ + +G ++ + + + G+ + + Sbjct: 1324 VNQRWAEMLGYGLDEISPVLRQTWLETIHPEDRELVLARGNDYRAGVLDRYEVEYRARAK 1383 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +GT ++ + A+ + + + R G V A +++ + Sbjct: 1384 DGTARWL-VSRGAIMEHQEDGQPR--RMVGTVQDITERKLMEAALSESEERSRLILTSVT 1440 Query: 213 GHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKY----PLL 262 + + + +++++ + + H D + Sbjct: 1441 DGIFGMDAQGCTTFVNPAAAAMLGYREDELTGMLMHDTVHHSHPDGSPYAHEQCPMRAAF 1500 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDEGE 319 + E + + + + +Q K + + E E Sbjct: 1501 AEGAVRVITDEVLWHKDGHAFPVEYTAVPMQKRGKRVGAVVVFRDITQRKADEKRLAESE 1560 Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + + N + + Y G A +D+ Sbjct: 1561 QRLVLALQGANLGLWDWQAETGSLITNDIWSAMIGYTKEALDARYGNTFERWLALVHADD 1620 Query: 379 NAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 L A + + E + + ++ GI + Sbjct: 1621 LPETQQRLEAHLRGETEEFRAEYRMLTESGEWKWILDIGRGVEWDEQGVAKRLVGIHQDI 1680 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRA--VSKLFGYPVEDI 492 + + ++ + L+ + G + +G N + + +FG P Sbjct: 1681 DALKRSAEQLRLANFLSDQALDLSQAGYWHVPLTAEDG---YYNSSERAAAVFGDPPRPD 1737 Query: 493 LRKPFTVFLEQNTPS-------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 R N + T ++ + + + K++ + + Sbjct: 1738 WRYHVMDEWFANVEAGDKLASAATLANFTAAINGTVPRYDSIYAYKRPLDGKVVWIHAMG 1797 Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 DI+ K + + AK+IA+ + KSDFLA +SHEIRTP+ Sbjct: 1798 HVERDEQGKATDMYGITMDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMN 1857 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AIIG S + N R Y + RS +L I+ND+LD SKIE+GK+ + F Sbjct: 1858 AIIGMSHLALQTDL----NGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFID 1913 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 L++ + +LV L A EK + + S + + D + Q+ +N+ +NA+ FT Sbjct: 1914 FRLEDVLDNLSNLVGLKAEEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFT- 1972 Query: 721 SGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + G +++ T ++ V+D+G+GMT + K F Q S + GTGL Sbjct: 1973 AHGDVVVKVQQLERTTERIKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGL 2032 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GL ++K +V+ G+ + S P +G+ Sbjct: 2033 GLAISKRLVEMMEGEIDVDSVPEQGSDFHFS 2063 Score = 85.8 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 45/524 (8%), Positives = 128/524 (24%), Gaps = 68/524 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +DA G ++ +G ++ GM + D H D + + + + + Sbjct: 1443 IFGMDAQGCTTFVNPAAAAMLGYREDELTGMLMHDTVHHSHPDGSPYAHEQCPMRAAFAE 1502 Query: 146 -------KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 LW +G P++ A+P+ R + G + Sbjct: 1503 GAVRVITDEVLWHKDGHAF--PVEYTAVPMQKR-GKRVGA--VVVFRDITQRKADEKRLA 1557 Query: 199 RLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----------EY 246 + + L G + E + + + + + Sbjct: 1558 ESEQRLVLALQGANLGLWDWQAETGSLITNDIWSAMIGYTKEALDARYGNTFERWLALVH 1617 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSH 305 + + + L E E T + ++ + + + Sbjct: 1618 ADDLPETQQRLEAHLRGETEEFRAEY-RMLTESGEWKWILDIGRGVEWDEQGVAKRLVGI 1676 Query: 306 RNHPSLSAYFDEGENLT----PETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVD 358 E L + +D ++ + + + ++ + Sbjct: 1677 HQDIDALKRSAEQLRLANFLSDQALDLSQAGYWHVPLTAEDGYYNSSERAAAVFGDPPRP 1736 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVML---YRSDRTCIAASARLHTIQWNRENSLAMTF 415 D + + D A + + T + + + + Sbjct: 1737 DWR-YHVMDEWFANVEAGDKLASAATLANFTAAINGTVPRYDSIYAYKRPLDGKVVWIHA 1795 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------------------QLCSI 457 + + ++ + GI + +++ ++ ++ + Sbjct: 1796 MGHVERDEQGKATDMYGITMDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTP 1855 Query: 458 LEA---TSDGIAIINREGI----ILSTNRAVSKLFGYPVEDILRKPFT-----VFLEQNT 505 + A S + G I R+ L G + + + Sbjct: 1856 MNAIIGMSHLALQTDLNGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFR 1915 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + L+ ++ L + S +L+ +L Sbjct: 1916 LEDVLDNLSNLVGLKAEEK-GLELHFSLPPGLHTALKGDPLRLG 1958 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 52/459 (11%), Positives = 113/459 (24%), Gaps = 68/459 (14%) Query: 175 FSGFRGF--GIVHVNRVD---NDPRALGKRLDKKFSHLHEIKKGHSSV-EKEKYDIFSQQ 228 G R F + + A + E+ V + F+ Sbjct: 851 VRGNRNFLQAMARDLEIRHYTQALVASDLADLSRNPAQQEMAAHFQRVILAREAQSFALL 910 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 +R L + +A P E + Sbjct: 911 DATGTIRFSTNSHDLGKQHALASLRADALAKVFAGEGVFIAPLLEP---VEGEARPSLFM 967 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD--KCPIPFFVYSHGNLFYANP 346 ++N + ++ L+ R P+ +T + + S Y Sbjct: 968 MEPVKNATGQTLAALAQRLDPTQEWTRIANVGRLNKTGETYLFNQAGILASESRFLYQLK 1027 Query: 347 SFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVML----YRSDRTCIAASAR- 399 L L + + + G L P+ ++ Sbjct: 1028 Q-LKLVGEQENSILNLRLGDPGGDLFKGYTPHKTRDQYPLTRMAQAAIKGQSGQDIEGYR 1086 Query: 400 -------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT------------ 440 L W+ E L M + +N + T Sbjct: 1087 DYRGVPVLGVWLWDSELGLGMVSEVDVQDALTSYYANRNALLWVLAVTLLLSLALTVFSA 1146 Query: 441 ---RINKRKMEIEVMQLCSI------------------LEATSDGIAIINREGIILSTNR 479 R++ +L + L + S+G+ ++++ IL N Sbjct: 1147 LLGERANRQLLKSKDELEDMVQSRTMALNRASEGLNLALSSMSNGLIMLDQALTILIVNG 1206 Query: 480 AVSKLFGYPVEDI-LRKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 L P + + KP + + +V + +RQ +T Sbjct: 1207 HYLSLLQLPETLVGVGKPIEPVVRYLVVRGDYGAVDEESMVRQQLQSMRQQQSGNIELNT 1266 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + + + + T+ D++E K+ + +L+ Sbjct: 1267 PDRRSIDVHQAPT---ETGGMVFTLTDVTERKRSEERLN 1302 >gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39] Length = 903 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 117/682 (17%), Positives = 250/682 (36%), Gaps = 60/682 (8%) Query: 165 ALPIYSRNREFSG----------FRGFG-----------IVHVNRVDNDPRALGKRLDKK 203 P+ + G + G I+ + L R + Sbjct: 99 GAPLVDEDGFVLGTVCVFDTEPRYMGIAQKEGLKILAKEIITHISLRKKAHELEVRNHRF 158 Query: 204 FSHL--HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKT 256 L ++ + ++ + + H+ N ++ + + + Sbjct: 159 EDLLNISKVSPEMHCILDDRGVLLFANNAIQHVLEYNPEEAVGQSAWGYCWKEDLERVSQ 218 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L+ T + N ++ + ++ + + + Sbjct: 219 TISSGLSKGVKDFKIDFRVVTKSGNMRWLSWSM------VCKNRRWYAYGRDITENKRVE 272 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 K + N + N +F +T + ++D++ L L+ P+ Sbjct: 273 NELMKLSLVASKVNNGVVINDANNHVTWVNDAFEKITGFT-LEDLKGR-RLGDLITGPET 330 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 K L + ++ + L + +++ ++ N + I Sbjct: 331 KLELIDKARALTQKKQS---FTVDLLAYRKDKQPI-WLSIYNTVIFNDEGMVDIEVEIII 386 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + ++ QL S++ + +D + I + EG TN ++ KL GY + ++ Sbjct: 387 DITEKKKAEEEL-----QLLSLVASKTDTSVNITDGEGNTTWTNASLEKLTGYSLNELQG 441 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 L + + + I + + TK+ L + + + + Sbjct: 442 FKLGDVLSREEGHIELIEESRIRARNNES-YSIEVQARTKQGDPLWISVSTTPIVNENGR 500 Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+ KQ + +L AK+ A + S K FL+ +SHEIRTPL +IG + ++ Sbjct: 501 VERQIDLITDITHRKQAEKELIEAKEHALQLSEAKEMFLSVMSHEIRTPLNTVIGVAHLL 560 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + P ++ N + S +L+I+ND+LD++K+E+G + L P ++ + Sbjct: 561 LDNDPLPG----QMDDLNMLKFSAENLLNIINDILDLTKMETGHLQLETIPFNIQSLTRD 616 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +S + + + K ++ F + IP+ I D + Q+ +N+L NAI FT G ++I Sbjct: 617 IVSSLHINVSSKGNILELDFDDRIPKFIKGDKIRLYQVLMNLLGNAIKFTDQGNILLIIR 676 Query: 730 THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 N+E + V+D+G+G+ +L PF Q GTGLGL + + M+ Sbjct: 677 LLEENDEQVILYFEVKDSGIGIPKEKLSLIFDPFMQATTDTSRHYGGTGLGLTITQKMLQ 736 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 + + S+ GT Sbjct: 737 LLGAEISVQSSVGVGTSFSFSI 758 Score = 45.8 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 6/139 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146 D G + L K G ++ G +L DV ++ +N ++ + Sbjct: 415 TDGEGNTTWTNASLEKLTGYSLNELQGFKLGDVLSREEGHIELIEESRIRARNNESYSIE 474 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G L++ + + PI + N R ++ + Sbjct: 475 VQARTKQGDPLWISV--STTPIVNENGRVE--RQIDLITDITHRKQAEKELIEAKEHALQ 530 Query: 207 LHEIKKGHSSVEKEKYDIF 225 L E K+ SV + Sbjct: 531 LSEAKEMFLSVMSHEIRTP 549 Score = 41.6 bits (96), Expect = 0.65, Method: Composition-based stats. Identities = 20/246 (8%), Positives = 67/246 (27%), Gaps = 7/246 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKT 147 DA+ ++ +++ K G + G RL D+ ++ + L +++ ++ Sbjct: 293 DANNHVTWVNDAFEKITGFTLEDLKGRRLGDLITGPETKLELIDKARALTQKKQSFTVDL 352 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + + + I++ I+ + L S Sbjct: 353 LAYRKD--KQPIWLSIYNTVIFNDEG--MVDIEVEIIIDITEKKKAEEELQLLSLVASKT 408 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLLTSEE 266 + S + + + + L + + ++ ++ E+ + Sbjct: 409 DTSVNITDGEGNTTWTNASLEKLTGYSLNELQGFKLGDVLSREEGHIELIEESRIRARNN 468 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 S + T + + N + + + ++ E Sbjct: 469 ESYSIEVQARTKQGDPLWISVSTTPIVNENGRVERQIDLITDITHRKQAEKELIEAKEHA 528 Query: 327 DKCPIP 332 + Sbjct: 529 LQLSEA 534 >gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 953 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 124/729 (17%), Positives = 254/729 (34%), Gaps = 59/729 (8%) Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREF 175 +V ++ + + LLKR + T + L + + + + R R+F Sbjct: 96 WSEVPILVLLQAGDPDSKLLKRVLSLEHVTLI----NRPLRIAVFINTVRAKLRDRMRQF 151 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PP 231 V ++ D R + + + G ++ E K ++ ++ Sbjct: 152 E-------VRDLLLEKDRAQTSLRREARRLDMAIQAGGMAAWEWSKTHVYWSEAFRRLHG 204 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 ++ S++ + + + + + + L + Sbjct: 205 FGKNVQPSESAMFGSIVESEREQIANHWSDAIEQNAPFRSEFRINHPKLGERWLVAVGEP 264 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPS 347 ++ S ++ Y + + + + ET + P +V + Sbjct: 265 VKGKSGKTLRYTGLQWDITERKTAEMELRQSHETFQRLITDNPQGLYVVDADFRMRYVSA 324 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWN 406 + I P AI+ A + N Sbjct: 325 GARSVFVNAEPLIGKPFEDVMRTIWPNDFAEEAIRVFRHTLETGEPYVAPPLVEQRVDTN 384 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + +++ + I +A+ + Sbjct: 385 ETEAYDWSIERIVLPD---NRHGVVCHFYNNTQRQLSVDLLRESERYFREIADASPAMLW 441 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + + + ++ G E+ + +T + + + + Sbjct: 442 VTDENHMCTFLSKNWYDTTGQTPEEGMGLGWTNATHPDDHARVGEEFLTAANARQAVLS- 500 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582 + + + S + + D+ + K + L AK IAE + Sbjct: 501 -EYRLRMADGTYRWAVDVGRPRFDSDGVFVGYTGYVIDVDDRKAFEQSLEQAKVIAENAN 559 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + +FLA +SHEIRTP+ AI+G ++++K+ L +P I+ I R+GN +L+I+N Sbjct: 560 RSRGEFLANMSHEIRTPMAAILGHADILKDH----LRDPDNIQVVETIRRNGNFLLNIIN 615 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+LD+SKI+SGKM L + V D ++E SL+ + A+EK + ++ F IP I D Sbjct: 616 DILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRASEKHLPLKIEFDGPIPDLIETDA 675 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------------------EVIL 739 ++QI LN++ NAI FT SG ++ I + +I Sbjct: 676 VRLRQILLNLVGNAIKFTDSG-EVKILVGYDGPGKRAAEIDQSDPSKLQSPVAGTCRLIF 734 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 ++ DTG+G+ + +PF Q ++ GTGLGL + + + A G + ST Sbjct: 735 QIVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLGLAICRRLAHALGGDVSVESTYG 794 Query: 800 KGTLIEIIF 808 KG+ + Sbjct: 795 KGSKFTLTI 803 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 31/254 (12%) Query: 1 MSTDSIISNP-EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQ-- 57 ++ + +I P ED++ + + + + + + ET + P + +N T+ Sbjct: 331 VNAEPLIGKPFEDVMRTIWPNDFAEEAIRVFRHTLETGEPYVAPPLVEQRVDTNETEAYD 390 Query: 58 ----------------------NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95 Q +S +SE F W D + Sbjct: 391 WSIERIVLPDNRHGVVCHFYNNTQRQLSVDLLRESERYFREIADASPA-MLWVTDENHMC 449 Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 +S+ T G + +G+ + + + + L +G Sbjct: 450 TFLSKNWYDTTGQTPEEGMGLGWTNATHPDDHARVGEEFLTAANARQAVLSEYRLRMADG 509 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 T +D+ P + + F G+ G+ I ++ + + + Sbjct: 510 T-YRWAVDV-GRPRFDSDGVFVGYTGYVI--DVDDRKAFEQSLEQAKVIAENANRSRGEF 565 Query: 215 SSVEKEKYDIFSQQ 228 + + Sbjct: 566 LANMSHEIRTPMAA 579 >gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 699 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 100/553 (18%), Positives = 217/553 (39%), Gaps = 33/553 (5%) Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + ++ + K + L+ + + L ++ P Sbjct: 2 WKSLKAAEKIKSGFIDALRQRLAGLRRSDAPEKGAPALVAAPISQGLVSSILEYLPEGML 61 Query: 335 VYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI---KPVMLYRS 389 V L + L + +E +L D A + + L R+ Sbjct: 62 VVEGEGLALRMVSRYAKELLGLSAEGLLERTYRDVSLHVPMYRQDAAAPAPFEALPLVRA 121 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 R+ + + + + + + + VDT++ ++K++ Sbjct: 122 VRSGELVTEEQWIVTRSDGYKIPVLCNAGPILDDSGRITGGILAFVDMVDTKLVEKKLQE 181 Query: 450 EVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + + ++ + +++ + I+ N + +++ GY E++ + V + P Sbjct: 182 SEEKFKKVFTSSPGILLLMDLDKKIILDVNNSFTEILGYGREEVRGQNVGVLGLIDAPGS 241 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 T + + E + +++ + ++ D+++ + Sbjct: 242 GAGLETLLETEGRFSDQELVVRTREGASRIILASADVVQVAGQRYLIAGGQDVTDLHEA- 300 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++ AE+ + KS+FLA +SHEIRTPL I+G + + + + EY Sbjct: 301 ------REDAERANRAKSEFLANMSHEIRTPLNGILGMTSLALMTC----TDHKGREYLG 350 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 +SG +L I+ND+LDISKIES + L + E + +++ A+ K + Sbjct: 351 LAQQSGQHLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVRFDA 410 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN----------EE 736 + A ++P ++ D ++QI +N++ N+I FT +G ++ ++ T Sbjct: 411 TVAPDVPDCVIGDEGRLRQIYVNLIGNSIKFTTAGEVEVRVAVAATDGRREPAAMGGKGR 470 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L +RDTG+G+ L++ F Q+ S R GTGLGL ++K +V+ G+ ++ Sbjct: 471 ICLISSIRDTGIGIPQKNLKRIFDTFAQV--SVGARYGGTGLGLSISKRLVELMGGRIWV 528 Query: 795 FSTPAKGTLIEII 807 S P +G+ Sbjct: 529 ESEPGRGSTFHFT 541 Score = 38.9 bits (89), Expect = 3.6, Method: Composition-based stats. Identities = 16/220 (7%), Positives = 57/220 (25%), Gaps = 6/220 (2%) Query: 89 IDAHGYLKE-ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D + ++ + +G ++ G + + I + LL+ + + + Sbjct: 200 MDLDKKIILDVNNSFTEILGYGREEVRGQNVGVLGLIDAPGSGAGLETLLETEGRFSDQE 259 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDKK 203 + + I +A + + + G + ++ D + L Sbjct: 260 LVVRTREGASRI-ILASADVVQVAGQRYLIAGGQDVTDLHEAREDAERANRAKSEFLANM 318 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + G + + +L + + + + + Sbjct: 319 SHEIRTPLNGILGMTSLALMTCTDHKGREYLGLAQQSGQHLLGIINDILDISKIESQRFE 378 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 E++ +E + + G + + Sbjct: 379 LEKAEFNPRETLENLFQTMRVEADAKGVRFDATVAPDVPD 418 >gi|300867853|ref|ZP_07112495.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300334184|emb|CBN57671.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1145 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 145/759 (19%), Positives = 271/759 (35%), Gaps = 120/759 (15%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D +G +I+ ++ + +V D +I + L Q T Sbjct: 463 LDRNGRYLKIAPTNQALTYKPMEDLVDKTIGEVFPPALADTFVGYIQNSLDSQQTVN--- 519 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + V + P+ + ++ V R +D + + L Sbjct: 520 VEYNLTIGDREVWFAASISPLSQES----------VIWVARDISDRKLAESARQQTEKQL 569 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + K L + + Sbjct: 570 LRQNSALVELARNKALY--------------------------RGDLNAAIKEITETTAC 603 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 +L + + ++ + F + +S + + + E+ D Sbjct: 604 TLELELASVWLYNESRSQMECFDRFERSSGLHKSGEPLVAADNPAYFQALEEDRIIAPGD 663 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 +S S+ +T S +LDAP + + L Sbjct: 664 -------PFSDRRTKDFANSYFAITGTAS------------MLDAPIRVGGVVMGVLCLE 704 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 ++T N + E D + + Sbjct: 705 EVEQTRYWTQEE---------------------QNFAASIADLVSLAIEASDRLRTETAL 743 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-P 506 + SI E T++G+ + EG LS N A+++++GY + LR+ + Q Sbjct: 744 RSAEEKYRSIFENTAEGLFQTSLEGHFLSANPALARIYGYSSPEELRELVSDIKSQVYVD 803 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 LT ++ + + ++ + ++ + Y ++ DIS Sbjct: 804 PHRRDELTRLIIQRGA-VSGFESQVYRADGSIIWISENVRSVLDRDGNVLYYEGSIEDIS 862 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K ++ L AK+ AE S KS FLA +SHE+RTPL AIIG+SE+++ + LG Sbjct: 863 DRKHFESVLQLAKEAAEAASMAKSSFLANMSHELRTPLNAIIGYSEMLQEETED-LGYQE 921 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I SG +L ++ND+LDISKIE+G+M+L+ E S+D+ + + + + A + Sbjct: 922 LTPDLHKIHISGKHLLSLINDILDISKIEAGRMDLYLETFSVDDLIDDVAATAKPLAEKN 981 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE-- 736 ++ ++I + AD+ V+QI LN+LSNA FT +G +I ++ + EE Sbjct: 982 GNILEVIKNSDIDTMHADITKVRQILLNLLSNAAKFTHNG-KITLAVSREIAAIDAEESM 1040 Query: 737 --------------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +I DTG+GMT+ +L++ +PF Q S + Sbjct: 1041 TTAEVIIDNQSNINNNNSSAISNFECLIFNCTDTGIGMTSEQLQQIFQPFTQGDASTTRK 1100 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++ GK + S G+ + P Sbjct: 1101 YGGTGLGLAISHCFCQMMGGKIAVESQIGIGSTFSVKLP 1139 Score = 81.2 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 9/236 (3%) Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 V + +A LS + + + + + E + Sbjct: 355 VAALAVAIVLSIYTSRWITNPIRRLSAATKAMAQGEL----NQKVEVPIAEELGILAESF 410 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + I + K++ +L ++ S+ I +++R G L Sbjct: 411 NLMAKQLRSSFAAMEATNVDLEQRVIERTAKLQSAEAELRALFAGMSELILVLDRNGRYL 470 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 L P+ED++ K Y+ SLD +QT+ + + Sbjct: 471 KIAPTNQALTYKPMEDLVDKTIGEVFPPALADTFVGYIQN--SLDSQQTVNVEYNLTIGD 528 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + I L S DIS+ K ++ +K +++S + Sbjct: 529 -REVWFAASISPLSQES-VIWVARDISDRKLAESARQQTEKQLLRQNSALVELARN 582 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 63/217 (29%), Gaps = 17/217 (7%) Query: 48 SFEQSNFTDQNQESVSNTNYLDS----ENTFVFDPIPRTVRF------TWNIDAHGYLKE 97 + E+ NF + VS E F + G+ Sbjct: 713 TQEEQNFAASIADLVSLAIEASDRLRTETALRSAEEKYRSIFENTAEGLFQTSLEGHFLS 772 Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG-KTTLWPIEG 154 + L + G + + + + D+ +++DP+ + + L+ ++ G ++ ++ +G Sbjct: 773 ANPALARIYGYSSPEELRELVSDIKSQVYVDPHRRDELTRLIIQRGAVSGFESQVYRADG 832 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + + I + R+ + G + ++ + + K Sbjct: 833 SI--IWISENVRSVLDRDGNVLYYEG--SIEDISDRKHFESVLQLAKEAAEAASMAKSSF 888 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + + ++ + L D Sbjct: 889 LANMSHELRTPLNAIIGYSEMLQEETEDLGYQELTPD 925 >gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia oklahomensis C6786] Length = 764 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 110/626 (17%), Positives = 203/626 (32%), Gaps = 31/626 (4%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 ++ + I + + S L + + + Sbjct: 5 ARRRAKNYAVIAGFVVIATLLQAALVHFGSADMPLTPYFPFIAAAAWATSLGGGIGATLA 64 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDE 317 + L + + + + F + L L Sbjct: 65 SAVLIWVMFLSDTVAYPGPLSARIVQLATFVIVNGAICAIVAALKRSRRMNEVLRRREAL 124 Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + V G L Y NP+ L + Sbjct: 125 ARRYYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGC-DATAVRGLPFRDVFNAYDSRG 183 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + H + + + + + + I + Sbjct: 184 ERARSTALEQVLRSGASATVE--RHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRD 241 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 R L ++EA+ D I + + I S N A ++FGY + + Sbjct: 242 ISGERERAAA----NRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRD 297 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + H L LS L + ++ L + + + Sbjct: 298 VAMLIAPRWRR--RHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACV 355 Query: 557 ----TMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 T+ D E ++ + + H+ ++ A+ + K + LA VSHE+RTPL I G Sbjct: 356 ALSLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYG 415 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + EV++N G L + + IDRS + +V D+LD S + +GK+ L PV L Sbjct: 416 WIEVLRNPAGGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 V++ + A + + + A + D ++Q+ N+LSNA FTP GG++ Sbjct: 472 RIVNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRV 531 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S ++ L V DTG G++ L + F + S G GLGL + + + Sbjct: 532 TVSL-MRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIA 590 Query: 786 DANMGKFYIFSTPAK--GTLIEIIFP 809 + + GK + S K GT + P Sbjct: 591 ELHGGKVEVASA-GKRLGTTFTVTLP 615 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 26/232 (11%), Positives = 55/232 (23%), Gaps = 5/232 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D G L ++ IG A + G+ DV + L+ R Sbjct: 144 DRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERARSTALEQVLRSGASATV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI A P+ + +G IV + + A + L + Sbjct: 204 ERHWLASRDGPRVPIAEVASPLVDSAGDMNGA--VLIVRDISGERERAAANRMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G + + + + + + + A + L E Sbjct: 262 SPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + ++ + ++ + Sbjct: 322 PIENVDVLCARQDGSRLRATLSASPVFDDRDACVALSLTLRDTGEQRRRERR 373 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 55/208 (26%), Gaps = 22/208 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + A + + + G G + + + L Sbjct: 269 VGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYEPIENVDV 328 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L+A P++ + AL L Sbjct: 329 -LCARQDGSRLRATLSASPVFDD------------------RDACVALSLTLRDTGEQRR 369 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ H S+ + +++ R+K+++ + + + +L + Sbjct: 370 RERRTHHSLRGARD---ARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGG 426 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNS 296 +Q+ I+ + + + G + + S Sbjct: 427 ALQQQAIDAIDRSARSLSRMVGDILDAS 454 >gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 590 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 170/373 (45%), Gaps = 25/373 (6%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + ++ E ++ +IL +DG+ +N EG ++ N ++ I + Sbjct: 233 TTRLKETMEEISDEKEKMEAILINMADGVIALNDEGQVIHINPVARQMLSLEEG-INGQN 291 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 F++ L + M L TL TK+ L S+ +++ + Sbjct: 292 FSLELNKLLNIDMKQLLNN-------DFDNSETLIKTKDAILKSIYAPLRRENRIVGHIF 344 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ + + + + +F+A VSHE+RTPLT I ++E + + Sbjct: 345 VFQDITKQHRLE--------------AMRKEFVANVSHELRTPLTTIKSYAETLLDGALE 390 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 ++ + I+ + + +V+DLL++S++++ + +P+ + + I+ + Sbjct: 391 EA--EISRQFTSVINDEADRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMD 448 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + K I+ + +P + AD V+Q+ NILSNA +TP GG+I I + Sbjct: 449 VNIKRKGQTIKANIPEELPEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEYAEK-M 507 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + +DTGVG+ +L + + F ++ ++ GTGLGL +A+ +V A+ G+ I S Sbjct: 508 VKVTFKDTGVGIPKEDLPRIFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISS 567 Query: 797 TPAKGTLIEIIFP 809 KGT + I P Sbjct: 568 ELGKGTSVIIQIP 580 >gi|298247995|ref|ZP_06971800.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550654|gb|EFH84520.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 853 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 112/737 (15%), Positives = 244/737 (33%), Gaps = 48/737 (6%) Query: 91 AHGYLKEISE-ELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR---QNTWYG 145 G + EI+E L + ++IG L + + + R T Sbjct: 151 PEGIVLEINEVPLAEAR-VRREEVIGYPLAETRWWSCSPTSQEQLCAAIARASRGETVRF 209 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + EG + ++ + + P + + GI A L Sbjct: 210 EAVVHLREGLDRHLEVVI--TPHRDADHHIAYLIIAGI--DITERKRAEAELHAL---ID 262 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + ++ + + + +++ + + Sbjct: 263 AIPQLVWITRPDGSHDSFNQRWRDYTGLSTAEAQGEGWMQCLHPEDRSRVRSAWQHAVQT 322 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E + + + ++ ++ + E Sbjct: 323 GGGYETELRLRQGTTGEYRWFLARAMPARGETGQILKWFGTSTDIEEQKRVEQQLKESQE 382 Query: 325 ----TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + P +V L Y N + T +E + D+ Sbjct: 383 SLRVLAETVPQQVWVRRPDGLYEYTNQRWRDYTGLT----LEHIQNDRRVHLQFIHPDDQ 438 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 V + + T Q ++ + + G + + Sbjct: 439 DGHLVHMQHALDTGAMFEYEQRLKQCQTGEYRWFLSRAMPMRDEAGQILKWFGTNTDIEE 498 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPF 497 + + + ++ ++ ++ GI + ++ N ++ GY ED+ R + Sbjct: 499 QKRTEEALRQSQERVNVLMNSSIIGIF-FAEDEQVVEANETYLRMTGYSREDLCEGRMNW 557 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556 + E+ + EK + K+ L + + L Sbjct: 558 LHMTPPEYLARTLEAQQELATQQSLTPYEKEYVC--KDGSCLPVLVGGVILEHHPLQAIG 615 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D S K+ + + K DF++ SHE+R PLTA+ + + +++ Sbjct: 616 FVLDNSARKELEQR--------------KDDFISMASHELRNPLTALKLHT-TLLHRQLA 660 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 G + ++ N V +V +LLD+SKI++G++ +E V LD + E VQ Sbjct: 661 KQGLQGSAPALSSMETQINKVTRLVEELLDVSKIQAGRLEYVWETVDLDALLREITDTVQ 720 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 RIL+R + ++ +AD + Q+ N+LSNA+ ++PS + + + ++ Sbjct: 721 QTHPSHRILVRGAVQTSL---MADRDRLGQVFTNLLSNAVKYSPSAEAVEMDLSTSAE-T 776 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V +RV+D G+G+ + +K F ++ + +Q G G+GL + +V G + S Sbjct: 777 VTIRVQDHGLGIPREKRDKIFDRFYRVADPRQKAIPGLGMGLYIVAEIVKHYGGTITVES 836 Query: 797 TPAKGTLIEIIFPLYDT 813 P KG+ +++ P T Sbjct: 837 EPGKGSTFQVMLPRKRT 853 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 46/536 (8%), Positives = 125/536 (23%), Gaps = 41/536 (7%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 + + ++ + P F +D + + G ++G Sbjct: 4 TKPTKRLTPASSETLLTLLETLPGAL---FV--VDDAAKIVYANASAQTITGATREDVLG 58 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 L + L ++ + P+ + + P Sbjct: 59 KPLWRGAPQLVSTALYQAVQQTRQTQAPSEVEYVSPVT----RTWLHVQLSP------TV 108 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPH 233 G VH R A + ++ V + + Sbjct: 109 GGLM--VQVHQGRAAARREAPVPQDERLSIEDLNGLFSRIGVLTPEGIVLEINEVPLAEA 166 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-----LPEQEDFHTINLNQYTKKQY 288 + +V T + L + + + + H + Sbjct: 167 RVRREEVIGYPLAETRWWSCSPTSQEQLCAAIARASRGETVRFEAVVHLREGLDRHLEVV 226 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347 ++ + + + +D P ++ G+ N Sbjct: 227 ITPHRDADHHIAYLIIAGIDITERKRAEAE---LHALIDAIPQLVWITRPDGSHDSFNQR 283 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + T + + + G + L + RL Sbjct: 284 WRDYTGLSTAEA-QGEGWMQCLHPED---RSRVRSAWQHAVQTGGGYETELRLRQGTT-- 337 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + G + + + +++++ L + E + + Sbjct: 338 GEYRWFLARAMPARGETGQILKWFGTSTDIEEQKRVEQQLKESQESLRVLAETVPQQVWV 397 Query: 468 INREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +G+ TN+ G +E I + F+ + ++ L Sbjct: 398 RRPDGLYEYTNQRWRDYTGLTLEHIQNDRRVHLQFIHPDDQDGHLVHMQHALDTGAMFEY 457 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577 E+ + + + + + T DI E K+ + L +++ Sbjct: 458 EQRL-KQCQTGEYRWFLSRAMPMRDEAGQILKWFGTNTDIEEQKRTEEALRQSQER 512 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 35/382 (9%), Positives = 81/382 (21%), Gaps = 27/382 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W G ++ G + G ++ + Sbjct: 267 LVWITRPDGSHDSFNQRWRDYTGLSTAEAQGEGWMQCLHPEDRSRVRSAWQHAVQTGGGY 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T Y A+P + + FG K + Sbjct: 327 ETE-LRLRQGTTGEYRWFLARAMPARGETGQI--LKWFGTSTDIEEQKRVEQQLKESQES 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKDDVLKT 256 L E V + ++ L + D Sbjct: 384 LRVLAETVPQQVWVRRPDGLYEYTNQRWRDYTGLTLEHIQNDRRVHLQFIHPDDQDGHLV 443 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + EQ +++ + + ++ + Sbjct: 444 HMQHALDTGAMFEYEQRLKQCQTGEYRWFLSRAMPMRDEAGQILKWFGTNTDIEEQKRTE 503 Query: 317 EGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + E V+ I F + AN ++L +T Y D E ++ L Sbjct: 504 EALRQSQERVNVLMNSSIIGIFFAEDEQVVEANETYLRMTGYSREDLCEGR--MNWLHMT 561 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P ++ + ++ + L + + + + Sbjct: 562 PPEYLARTLEAQQELATQQSLTPYEKE---YVCKDGSCLPVLVGGVILEHHPLQAIGFVL 618 Query: 433 IEPEDVDTRINKRKMEIEVMQL 454 ++++E Sbjct: 619 DNS-------ARKELEQRKDDF 633 Score = 41.9 bits (97), Expect = 0.48, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 41/119 (34%), Gaps = 7/119 (5%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + +++ I+ N + + G ED+L KP Q + + + + Sbjct: 26 PGALFVVDDAAKIVYANASAQTITGATREDVLGKPLWRGAPQLVSTALYQAVQQTRQTQA 85 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 +E ++ + L +++ + +H + + + ++++ + Sbjct: 86 PSEVEYVSPVTR---TWLHVQLSPT----VGGLMVQVHQGRAAARREAPVPQDERLSIE 137 >gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 885 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 114/647 (17%), Positives = 225/647 (34%), Gaps = 34/647 (5%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + + L + D+ P L + + ++ Sbjct: 95 DSLLEAEMAARALAPGYEAQVFTDAAAMLERVAGGDV------PDVLVLDQVMPGMSGTE 148 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + L + ++ED L Sbjct: 149 ICGLLRSRAATVGLPILILTVAGQEEDLVEGLTAGADDYVVKPCPAAALSARVGALLRSK 208 Query: 308 HPSLSAYFDEG-----ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361 A E +L +++ G L N D + Sbjct: 209 RLRERAERAERIAAVERDLLRALIEQSGDGIMAADACGALRICNGEAQRQHGVYERDARD 268 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L L+R+ R +AR + + A++ Sbjct: 269 ALESLRNRGLLALDGRPLRPDEDPLHRALRGEKVENAR-WLVTRPDGSIRALSGTASPLR 327 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + I ++ D +R + + I+ A +GI + + G+I + N + Sbjct: 328 HADGSPAGAVLITRDETDAIEAERALRDSEERYRVIISALEEGITLQDERGVIRTANASA 387 Query: 482 SKLFGYPVEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EE 536 ++ G P+ ++ + ++ + ++L + LG + + Sbjct: 388 ERILGLPMAQLVGSTMMGPSCRLVREDGSPFPLEMVPSQIALRTGAPQSGVLLGLERLDG 447 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS-------HAKKIAEKESSHK 585 +L L + + L + DI+ K+ + + A++ AE S K Sbjct: 448 SVLWLSVNAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLAAAESARQEAEAASHLK 507 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA +SHE+RTPLTA++G+ ++ R G L R + ++R+ +++DLL Sbjct: 508 DEFLATMSHELRTPLTAVLGWVRML---RTGKLPEERRDKALETVERNAQAQAQLIDDLL 564 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 DIS+I +GK+ L + L + A+ +V+ A+ K + + + + + D ++ Sbjct: 565 DISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEPGVGAVAGDAGRLQ 624 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ N+L+NA+ FTP GG + I ++ + V DTG G+ L + F Q + Sbjct: 625 QVVWNLLNNAVKFTPRGGVVRIRLD-RADGSAEITVSDTGQGIEPAFLPYVFEQFRQAES 683 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811 R G GLGL + K++V+ + G + S +G + PL Sbjct: 684 GTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEGRGATFVVQLPLA 730 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 31/484 (6%), Positives = 109/484 (22%), Gaps = 45/484 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIG--------MRLCDVSDILHIDPNNHIGDLLKRQN 141 D G ++ + + +G +++G + + ++ L+ Sbjct: 375 DERGVIRTANASAERILGLPMAQLVGSTMMGPSCRLVREDGSPFPLEMVPS-QIALRTGA 433 Query: 142 TWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKR 199 G ++G+ L++ + A P+ + +G F + + + R Sbjct: 434 PQSGVLLGLERLDGSVLWLSV--NAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLA 491 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + E + L + + +D L+T + Sbjct: 492 AAESARQEAEAASHLKDEFLATMSHELRTPLTAVLGWVRMLRTGKLPEERRDKALETVER 551 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + + E + L + + Sbjct: 552 NAQAQAQLIDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEP 611 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANP------SFLLLTKYKSVDDIEIAGGLSTLLD 371 G + + + + + + + G+ Sbjct: 612 GVGAVAGDAGRLQQVVWNLLNNAVKFTPRGGVVRIRLDRADGSAEITVSDTGQGIEPAFL 671 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + R + + ++ + + A++ A + Sbjct: 672 PYVFEQFRQAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEGRGATFVVQLPLAA 731 Query: 432 GIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREG--------------II 474 + + L ++ + + + + + + Sbjct: 732 PPSHDRGRRLAALPSASAGSDRPPELAAL-----NVLVVEDEDDTRELLVTMLEQCGARV 786 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLEKITLGS 532 + + A L V + + + + S + Sbjct: 787 TAVSSAAEALLAVKALQPDVLVSDVAMPGEDGYALIRKIRALPAASGGRTPAIALTAYAR 846 Query: 533 TKEE 536 T++ Sbjct: 847 TEDR 850 >gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1] gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1] Length = 715 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 197/417 (47%), Gaps = 12/417 (2%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + E L+ + + + NG+ E + +++++ + + Sbjct: 304 VEVDDFVTRVRSEKDLSQRLSLEDNDELYRLSREINGMLNEIY---LAEQELKAQAREKK 360 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +L++ ++ ++ E I+ N+A + +E + V + P V + L E Sbjct: 361 VLLDSLNELAVFVDTELKIIWANKAALEYMNMGLEKAIGVCLKVAPGISGPLVEHLNLEE 420 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 I + +++ E + ++ ++ + I T D++E K+ + L H Sbjct: 421 IFTTGEKKSGE----YTAQDGRVWFAQAIPVPDEQGKIIGILQTCRDVTERKEAER-LLH 475 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 K+IAE + KS+FLA +SHE+RTPL +IIGFS+++ + +G L N + I RS Sbjct: 476 EKQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVYGEL-NEKQARAVGNISRS 534 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L+++ND+LD+SK+E+GKM L ++ L ++ SL+ A+ K I I Sbjct: 535 GKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLLSPIADRKNIEIDIEVDKG 594 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + I AD QI N++ NAI F+ G + + + V + V+D G+G+ + Sbjct: 595 LTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAE-RKGDLVEITVKDKGIGIKEEDQ 653 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K KPF Q+ + +GTGLGL L K +V+ + G+ + S +G+ P+ Sbjct: 654 CKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFNSKIGEGSTFAFTVPI 710 Score = 40.8 bits (94), Expect = 1.00, Method: Composition-based stats. Identities = 19/178 (10%), Positives = 45/178 (25%), Gaps = 22/178 (12%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYS 337 +L+Q + L S+E L+ E +D + FV + Sbjct: 318 DLSQRLSLEDNDELYRLSREINGMLNEIYLAEQELKAQAREKKV--LLDSLNELAVFVDT 375 Query: 338 HGNLFYANPSFLLLTKYKSVDDIE----IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + +AN + L I +A G+S L + Sbjct: 376 ELKIIWANKAALEYMNMGLEKAIGVCLKVAPGISGPLVEHLNLEEIFTT--------GEK 427 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + + ++ + + + + + +R + + Sbjct: 428 KSGEYTAQDGR-------VWFAQAIPVPDEQGKIIGILQTCRDVTERKEAERLLHEKQ 478 >gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira maxima CS-328] Length = 655 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 95/656 (14%), Positives = 217/656 (33%), Gaps = 57/656 (8%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + L + + L NK+ Sbjct: 25 QEIADRLRVEEALRASSELLQTLINAIPDLVCFKDSQGRWLEANQAVLDLLQLNKIDYRG 84 Query: 245 EYYAHKDDVLKTEKY---------------PLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + A D++K + E+E + Sbjct: 85 KTDAEIFDIIKHVNALSCYQEILLDSQCKDEKAWQLQKVYQEEEKIRQNDGILRIYDVMK 144 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348 L + + + + V+ G + N Sbjct: 145 VPLFTATGVRKGLVILGRDITAKKQAEADYIRLASMVESSEDAIIGNTLDGIIISWNEGA 204 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + Y + I + L + P + + ++ Sbjct: 205 KQIYGYSASQAIGSPISMLALPERPNEMP----RILTSITAEGGIDHYETIHVR---QDG 257 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 ++ ++ + + + I + + + +E Q IL++ +GI + Sbjct: 258 ANIDVSLTISPIKDALGQITGISMIARDISYRKRIECTLEQLRHQNELILDSAGEGICGL 317 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----------EQNTPSVMNHYLTEIL 517 N++G I N A +++ GY + +++ + + Sbjct: 318 NQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATLE 377 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574 +R ++ + K+ +L + + + +T DI+E + + Sbjct: 378 DGKVRHVIDGVFW--RKDGTILPVEYVSTPMRQEGAIIGAVITFKDITERQAME------ 429 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K +F++ VSHE+RTPLT+I G + + + + + Sbjct: 430 --------KMKDEFISVVSHELRTPLTSIRGSLGL-LSSGLLASSPEKSQRMLDIAMFNC 480 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + ++ +VND+LD+ ++ SG++ +H + V+L + + +A + A + + + Sbjct: 481 DRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGVDLCVI--PLE 538 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 +++ D + Q+ N+LSN+I F+ + +I + N+ V++ VRD G G+ ++E Sbjct: 539 FKVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQEND-VLISVRDRGRGIPPDKIE 597 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ S + GTGLGL + +++V + GK + S G+ + P+ Sbjct: 598 TIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGAGSTFFVSLPI 653 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 100/393 (25%), Gaps = 32/393 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIG--DLLKRQNTW 143 D+ G E ++ + + G ++ + + I K + W Sbjct: 59 DSQGRWLEANQAVLDLLQLNKIDYRGKTDAEIFDIIKHVNALSCYQEILLDSQCKDEKAW 118 Query: 144 YGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + + D+ +P+++ G G A R Sbjct: 119 QLQKVYQEEEKIRQNDGILRIYDVMKVPLFTATGVRKGLVILG--RDITAKKQAEADYIR 176 Query: 200 LDKKFSHLHEI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 L + G E S + + +L E +L Sbjct: 177 LASMVESSEDAIIGNTLDGIIISWNEGAKQIYGYSASQAIGSPISMLALPERPNEMPRIL 236 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + ++ ++D I+++ T L + S + Sbjct: 237 TSITAEGGIDHYETIHVRQDGANIDVSL-TISPIKDALGQITGISMIARDISYRKRIECT 295 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLS 367 ++ + +D + G + + NP+ +T Y + I G Sbjct: 296 LEQLRHQNELILDSAGEGICGLNQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCR 355 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + D+ P+ D + + L + ++ Q Sbjct: 356 SQTPGEPHPDSLQPSPIFATLEDGKVRHV-IDGVFWRKDG-TILPVEYVSTPMR-QEGAI 412 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + ++ ME + S++ Sbjct: 413 IGAVITFKDITE----RQAMEKMKDEFISVVSH 441 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 21/222 (9%), Positives = 58/222 (26%), Gaps = 20/222 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS------------DILHIDPNNHIGDL 136 ++ G + I+ + G ++I L ++ + P+ L Sbjct: 317 LNQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATL 376 Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + W +GT +P++ + P+ + G + Sbjct: 377 EDGKVRHVIDGVFWRKDGTI--LPVEYVSTPMR-QEGAIIGA--VITFKDITERQAMEKM 431 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 D+ S + + + + + S ++ + + + L Sbjct: 432 K---DEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPEKSQRMLDIAMFNCDRLMRLVN 488 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + L LP +D+ + + + Sbjct: 489 DILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGV 530 >gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11] gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11] Length = 837 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 131/743 (17%), Positives = 260/743 (34%), Gaps = 50/743 (6%) Query: 92 HGYLKEI--SEELPKTIGNYAFK-MIGMRLCDVSDILHI-------DPNNHIGDLLKRQN 141 + + +P+ G K + + D H+ L + Sbjct: 114 EQRVIVWTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGE 173 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T+ TTL G+ + + R R+ +G R A Sbjct: 174 TFN--TTLKTRTGSYVEALGRTTGGAVVLRLRDLTGER-----QAQAELQTRNAKISGEL 226 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + + + ++ + + A D + Sbjct: 227 HMLHALLDAMPAPAWQRDAEGNVIWANDAYAEAVEMPDAQAAVKEGATFLDAAARTAMAV 286 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 +E+ + + + N + + E Sbjct: 287 QRNEDGCFSARIPIVASGQRRV---FEITDVNANVGGAGIAVDISELEQAQKELGRAEEF 343 Query: 322 TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDN 378 T+D+ +YS L + N +F L ++ G + L A + Sbjct: 344 HGRTLDQLAAAVAIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRAARKLPE 403 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + + AR +L + P G Sbjct: 404 QADYRGWRNKMLEGYQSLEARESWWHLPDGRTLRVIANPHP-----------QGGVTYIY 452 Query: 439 DTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + +E L + L+ S+ +A+ +G + N A +++ E + R Sbjct: 453 ENVTEQLDLESRYNALTRVQGETLDNLSEAVAVFGSDGKLRLWNPAFGRIWDLEEEQLSR 512 Query: 495 KP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 P + + L ++ + + ++ +L + Sbjct: 513 FPHVNEVVSACALNDYEKTAWEQLASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLP-- 570 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 +T D+++ + L + E+ K+ F+ VS+E+R+PLT IIGF+++ Sbjct: 571 -DGGTLVTFVDVTDSVNVERALLEKNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQL 629 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + +FG L + EYA+YI S + +L I+ND+LD++ +++G M L V L V Sbjct: 630 LADPKFGDLT-EKQGEYADYIQSSSSALLAIINDILDLATLDAGIMELDLREVDLASTVE 688 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ ++ E RI +RT +NI ++AD + ++Q+ N++SNA+ ++ G + IS Sbjct: 689 AAVEGLKDRIAEARINLRTQVPDNIGNMIADEKRLRQVLFNLISNAVRYSEPDGVVDISC 748 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 +++V V+D G+G+ L + F + + R +G GLGL + K+ V+ + Sbjct: 749 D-RDDDKVTFVVQDHGLGIPAEILTQVFNRF--VGHDTGARRQGAGLGLAIVKSFVELHG 805 Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812 G I S KGT + +FP + Sbjct: 806 GTVDIDSVVGKGTTVTCVFPAHP 828 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 48/497 (9%), Positives = 149/497 (29%), Gaps = 64/497 (12%) Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-----------------REFSGFR 179 ++ + TW + G+ + + L+ P + + G Sbjct: 9 VRGRTTWQDWSLKTIKLGSVSGLAMALSGSPAAAADFISGTLAAINPDTMVMFGALGGMC 68 Query: 180 GFGI---VHVNRVDNDPRALGKRLDKKFSHL---HEIKKGHSSVEKEKYDIFSQQSPPPH 233 F + + + R L + L+++ L + + + ++++ +++ P Sbjct: 69 AFAVTAAIALVRHRAQSGQLTEALEQEKRDLKFRVDRLETMLNTDEQRVIVWTGNGAMPQ 128 Query: 234 L-----------RMKNKVSSL-TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + R ++ + + A L+ L + E+ + + Sbjct: 129 IWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNTTLKTRTGSYVE 188 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340 + + + E + + +A ++ +D P P + GN Sbjct: 189 ALGRTTGGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAMPAPAWQRDAEGN 248 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + +AN ++ + +E+ + + + D A + + R++ C +A Sbjct: 249 VIWANDAYA--------EAVEMPDAQAAVKEGATFLDAAARTAMAVQRNEDGCFSARI-- 298 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 +A + N+ GI + + ++++ L+ Sbjct: 299 --------PIVASGQRRVFEITDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQ 350 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHY--L 513 + +AI + + + N A +L+ + P Y Sbjct: 351 LAAAVAIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRAARKLPEQADYRGW 410 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + + + + + L + + +++E +++ + Sbjct: 411 RNKMLEGYQSLEARESWWHLPDGRTLRVIANPHP---QGGVTYIYENVTEQLDLESRYNA 467 Query: 574 AKKIAEKESSHKSDFLA 590 ++ + + S+ +A Sbjct: 468 LTRVQGETLDNLSEAVA 484 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 42/394 (10%), Positives = 107/394 (27%), Gaps = 39/394 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W DA G + ++ + + + + + + L + + Sbjct: 241 WQRDAEGNVIWANDAYAEAVEMPDAQA---AVKEGATFLDAAARTAMAVQRNEDGCFS-- 295 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 PI + + I N G GI + R ++ Sbjct: 296 -ARIPIVASGQRRVFE-----ITDVNANVGGA---GIAVDISELEQAQKELGRAEEFHGR 346 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ + + ++ + +L E + VL + E+ Sbjct: 347 TLDQLAAAVAIYSGDRKLQFYNAAF--RQLWDLDPALLESHPEDGAVLDALRAARKLPEQ 404 Query: 267 SSLP-----EQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAY 314 + E + ++ + G ++ Y + L + Sbjct: 405 ADYRGWRNKMLEGYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDLESR 464 Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ + ET+D V+ S G L NP+F + + + + ++ ++ A Sbjct: 465 YNALTRVQGETLDNLSEAVAVFGSDGKLRLWNPAFGRIWDLE-EEQLSRFPHVNEVVSAC 523 Query: 374 KLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L+D L S + + ++ + L +P Sbjct: 524 ALNDYEKTAWEQLASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLPDG-------GTLV 576 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + D+ +R + + L + + Sbjct: 577 TFVDVTDSVNVERALLEKNEALEQA-DQIKNAFI 609 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 32/303 (10%), Positives = 86/303 (28%), Gaps = 35/303 (11%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEI 362 L+ ++ + VD+ + N + + Sbjct: 82 RAQSGQLTEALEQEKRDLKFRVDRL-ETMLNTDEQRVIVWTGNGAMPQIWGILPEKSGVP 140 Query: 363 AGGLSTLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 L L+ + + + L + + T + Sbjct: 141 RPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNTTLKTRTGSY-------------V 187 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINREG 472 +A + R + +++ + L ++L+A + EG Sbjct: 188 EALGRTTGGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAMPAPAWQRDAEG 247 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ N A ++ P K FL+ + M + + +I + + Sbjct: 248 NVIWANDAYAEAVEMPDAQAAVKEGATFLDAAARTAM-----AVQRNEDGCFSARIPIVA 302 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + ++ + + + + DISE +Q + +L A++ + + +A Sbjct: 303 SGQRRVFEITDVNANVGGAG----IAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAIY 358 Query: 593 SHE 595 S + Sbjct: 359 SGD 361 Score = 38.5 bits (88), Expect = 4.5, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 16/178 (8%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST- 477 + KR ++ V +L ++L + + +I+ T Sbjct: 71 AVTAAIALVRHRAQSGQLTEALEQEKRDLKFRVDRLETMLNT--------DEQRVIVWTG 122 Query: 478 NRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTK 534 N A+ +++G P + + +P L + L L L R T T+ Sbjct: 123 NGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNTTLKTR 182 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + L + D++ +Q + +L E L + Sbjct: 183 TGSYVEALGRTT----GGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAM 236 >gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891] gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891] Length = 1319 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 96/383 (25%), Positives = 170/383 (44%), Gaps = 11/383 (2%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + R ++K+ + IL AT + + ++ +G L+ N +L G P+++I Sbjct: 452 LSQNIELQRKAEQKVLEQSQLNQEILNATPNPMYCLSSQGNYLTINAKFCELCGLPMQEI 511 Query: 493 LRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPF 550 + K Q + ++ + E L + + + + Sbjct: 512 IGKTPQDVFSQQDASQCFSEAHQQLTLKQGSKNYELSVLDQHLQTRDMLVCEASFSNSHG 571 Query: 551 -SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S + D++E K + +L AK+ A+ S K +FLA +SHEIRTP+ I+G + Sbjct: 572 KVSGIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHL 631 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 N P +Y I+ S +L I+ND+LD SKIE GK+N+ SLDE Sbjct: 632 ALNTELDPA----QHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-I 727 +++ L A EK+I +P ++ D + Q+ +N+ NA+ FT G ++ + Sbjct: 688 NLTNVISLKAQEKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747 Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + +V+ V+DTG+G+ ++ F Q +S GTGLGL ++K +V Sbjct: 748 RIEMLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLV 807 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 + G+ + ST G+ Sbjct: 808 ELMGGQLSVSSTLGAGSTFAFTI 830 >gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 576 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 122/529 (23%), Positives = 209/529 (39%), Gaps = 50/529 (9%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D + L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVNKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732 +V+ A +RI ++ + + D R KQI N+L+NA+ F+ GG + +S Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVS 463 Query: 733 -------SNEE---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + L V DTG+G+ ++ K K F QI + + Sbjct: 464 FAQAGVIEGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 EGTGLGL + K + + + G + S G + P+ P +C Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L + + + L + + R L D G Sbjct: 374 ILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431 Score = 44.2 bits (103), Expect = 0.098, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVNKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312 >gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation) [Geobacillus kaustophilus HTA426] Length = 582 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 178/395 (45%), Gaps = 22/395 (5%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + + R EI+ +L +++E G+ I+ G I Sbjct: 204 AARVPDGEYNEAGMLVRSINRLARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 263 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 NRA F D L +P+ L + ++ + ++T+G + Sbjct: 264 SLINRAFQTQFHLDPSDCLHRPYADVLPHGDIVRFIDDI--FITETTMRRHMRLTIGIER 321 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + II + HDI+E K+ + + DF+A VSH Sbjct: 322 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 367 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E++TP+T+I GF+E + + + I + + +V +LLD+SKIE Sbjct: 368 ELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESERLQTLVEELLDLSKIEQHG 425 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L E V + + ++EA ++ + A EK+I + + + I D +KQI LN+L+N Sbjct: 426 FQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIRGDRNRMKQILLNLLAN 484 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI +TP G++ + + +EV++ V+DTG+G+ E+ + + F ++ ++ GT Sbjct: 485 AITYTPEHGRVAVEAE-ETEKEVLIHVKDTGIGIEEKEIPRIFERFYRVDKARSRDSGGT 543 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + K +V+A+ G + S +GT+ I FP Sbjct: 544 GLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578 >gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 582 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 177/395 (44%), Gaps = 22/395 (5%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + + R EI+ +L +++E G+ I+ G I Sbjct: 204 AARVPDGEYNEAGMLVRSINRLARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 263 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 NRA F D L +P+ L + ++ + ++T+G + Sbjct: 264 SLINRAFQTQFHLDPSDCLHRPYADVLPHGDIVRFIDDI--FITETTMRRHMRLTIGIER 321 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + II + HDI+E K+ + + DF+A VSH Sbjct: 322 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 367 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E++TP+T+I GF+E + + + I + + +V +LLD+SKIE Sbjct: 368 ELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESERLQTLVEELLDLSKIEQHG 425 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 L E V + + ++EA ++ + A EK+I + + + I D +KQI LN+L+N Sbjct: 426 FQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIRGDRNRMKQILLNLLAN 484 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI +TP G++ + +EV++ V+DTG+G+ E+ + + F ++ ++ GT Sbjct: 485 AITYTPEHGRVAVEAE-EREKEVLIHVKDTGIGIEEKEIPRIFERFYRVDKARSRDSGGT 543 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + K +V+A+ G + S +GT+ I FP Sbjct: 544 GLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578 >gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter sp. SK209-2-6] Length = 753 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 106/623 (17%), Positives = 231/623 (37%), Gaps = 33/623 (5%) Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277 E ++ + H + V + + + Sbjct: 3 EAQRTKLGPVARHQAHFSPEGLFERYLRGQIRLLWVRLAYCAGMSALLVALFSLE--TGL 60 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 L + TL P PF++ Sbjct: 61 AALVLTWFAELTDTLVLRYARLRMQRGAALRPLELLTAFSSLFYGALVSAAAVAPFWMED 120 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-------PVMLYRSD 390 G N L+ + + + ++ +L+ + ++ D Sbjct: 121 GG----LNGQTELILGFPAAFLTGATLNIGMVISYHRLAVLARLACYAVTPLLLLRVWQD 176 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--- 447 + RL + + FI + + Q + + +++ Sbjct: 177 AWLLNTDLRLQVVGLVALYVALVWFIVYAQRGFVRTRTLQLTQAMQQQELESAYQRLLEQ 236 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + E +L + +D I +I++ G N+A +K GY +++ + + L Sbjct: 237 QTESRRLALVARHANDSILMIDKTGRTEWVNKAFTKTTGYSFKEVYGQDLGLLLNHPDTD 296 Query: 508 VMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 + + I R ++ L K+ + + + I + + Y D++ Sbjct: 297 PV--AVKTINEGRARGESFRVELLNKRKDGQAIWVETIQVPILGADGTLQSYIAIERDVT 354 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K+ + L A+ AE+ + K++FLA +SHEIRTP+ ++G +++++ + Sbjct: 355 QAKEHADHLEEARAAAEEGARAKAEFLANMSHEIRTPMNGVMGMAQLLEETEL----DED 410 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + I S +L ++ND+LD+SK+++GK+ L+ + + L+++ A K Sbjct: 411 QRLYTDTILSSARTLLALINDILDLSKLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAK 470 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV 737 + + ++P R+ D +KQI +N++ NA+ FT G +++I+ + Sbjct: 471 ELELTYEPQADLPTRLRGDDNRIKQILINLIGNAVKFTDEG-KVMIALASEELPDGRAMI 529 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTGVG+ +L + F Q + R G+GLGL +++ +V+ G+ + S Sbjct: 530 RFSVKDTGVGIAEDKLSGIFERFTQADAAINRRYGGSGLGLSISRHLVNLMEGEISVASK 589 Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820 P +G+ ++ PL + + Sbjct: 590 PGQGSCFTVVLPLEQVEPAEEVV 612 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 42/390 (10%), Positives = 102/390 (26%), Gaps = 24/390 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146 ID G + +++ KT G ++ G L + + DP I + R ++ + Sbjct: 257 IDKTGRTEWVNKAFTKTTGYSFKEVYGQDLGLLLNHPDTDPVAVKTINEGRARGESFRVE 316 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + ++ +PI + + I + + Sbjct: 317 LLNKRKDG--QAIWVETIQVPILGADGTLQSY--IAIERDVTQAKEHADHLEEARAAAEE 372 Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 K + + + + T+ L + Sbjct: 373 GARAKAEFLANMSHEIRTPMNGVMGMAQLLEETELDEDQRLYTDTILSSARTLLALINDI 432 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + E T + ++ ++ L++ L +N Sbjct: 433 LDLSKLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNR 492 Query: 322 TPETVDKC-PIPFFVYSHGNLFYA-------NPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + G + A + ++ K LS + + Sbjct: 493 IKQILINLIGNAVKFTDEGKVMIALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERF 552 Query: 374 KLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 +D + + L S + + S +P E+ E + Sbjct: 553 TQADAAINRRYGGSGLGLSISRHLVNLMEGEISVASKPGQGSCFTVVLPLEQVEPAEEVV 612 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 +E D+ + R + E ++ +L Sbjct: 613 ESPPLEESDLSSLAGLRLLVAEDNRVNRLL 642 >gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 995 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 121/562 (21%), Positives = 207/562 (36%), Gaps = 62/562 (11%) Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDEGENLTPETVDKC 329 E I+ L ++ E E D Sbjct: 319 ERMEQIDPQHLADASPIKLLSDDEVGRLAATFNNLLTEVAQTDKRLRESETNFRTFFDTI 378 Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK------ 382 FV +G + N + Y+ + + L+ P + A + Sbjct: 379 DHFLFVLDHNGLILKVNQTVTQRLGYEESELLGQ----HVLVIHPAERRDEAGRIITEML 434 Query: 383 -------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 PV L D IA ++ WN +L Sbjct: 435 AGTVSFCPVPLVCKDGRLIAVETQVVAGTWNGRPALFGITKDISV--------------- 479 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILR 494 ++ + A+ +A+ +G+ L N A + G+ ++++ Sbjct: 480 -----------LQESEEKFSRAFNASPALMALSTLEDGVYLDVNEAFLQQSGFARDEVIG 528 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSS 552 K + + ++ K + +K LL + +L Sbjct: 529 KSSLELGLFTDYEQRLEMRRLL--NEQQRVRNKKIVMRSKSGGLLYGLFSAELIRLQQRD 586 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 M DI++ ++ L AK+ AE S KS+FLA +SHEIRTP+ ++G +E++ Sbjct: 587 LLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEFLANMSHEIRTPMNGVLGMAELLAF 646 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +Y I SG+ +L ++ND+LD+SKIE+GK+ L + SL +A+++ + Sbjct: 647 TDLTA----EQEQYLACIKSSGDNLLALINDILDLSKIEAGKIELEYADFSLRKAINDVV 702 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + KR+ A ++P +L D KQI LN+LSNAI FT G + IS Sbjct: 703 TTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLLSNAIKFTDHGS-VSISAEL 761 Query: 732 TS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 V + V DTG+G+ + PF Q +S R GTGLGL +++ + + Sbjct: 762 IECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAISRQLAEL 821 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 G + S P G+ + P Sbjct: 822 MGGDIGLESEPGSGSRFYLDLP 843 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 29/236 (12%), Positives = 70/236 (29%), Gaps = 14/236 (5%) Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 S G + AN + + + L + + + T A Sbjct: 263 SAGWILAAN--------LPTTEAYQPVQRF-RLFFLGGMILVMLMAVWGVRLLVGTFTAG 313 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ARL + P + + + +++ + Sbjct: 314 LARLSERMEQIDPQHLADASPIKLLSDDEVGRLAATFNNLLTEVAQTDKRLRESETNFRT 373 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + + +++ G+IL N+ V++ GY ++L + V +TE+ Sbjct: 374 FFDTIDHFLFVLDHNGLILKVNQTVTQRLGYEESELLGQHVLVIHPAERRDEAGRIITEM 433 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L+ + K+ +L+++ ++ DIS ++ + K Sbjct: 434 LAGTVSFC---PVPLVCKDGRLIAVETQVVAGTWNGRPALFGITKDISVLQESEEK 486 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 23/271 (8%) Query: 61 SVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 + ++ +SE F FD I F + +D +G + ++++ + + +G +++G + Sbjct: 358 AQTDKRLRESETNFRTFFDTIDH---FLFVLDHNGLILKVNQTVTQRLGYEESELLGQHV 414 Query: 119 CDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 + D I ++L ++ + +G + V + A ++G Sbjct: 415 LVIHPAERRDEAGRIITEMLAGTVSFCPVPLV-CKDGRLIAVETQVVA-------GTWNG 466 Query: 178 FRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 FGI V + R L S++E Y ++ Sbjct: 467 RPALFGITKDISVLQESEEKFSRAFNASPALM----ALSTLEDGVYLDVNEAFLQQSGFA 522 Query: 237 KNKVSSLTEYY--AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY--TKKQYFGTL 292 +++V + D + E LL ++ ++ + + L Sbjct: 523 RDEVIGKSSLELGLFTDYEQRLEMRRLLNEQQRVRNKKIVMRSKSGGLLYGLFSAELIRL 582 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 Q + + + E + Sbjct: 583 QQRDLLLTVMVDITDRVNAEHALLEAKQAAE 613 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 3/125 (2%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G +++E + G ++IG ++ + + LL Q K + Sbjct: 505 DGVYLDVNEAFLQQSGFARDEVIGKSSLELGLFTDYEQRLEMRRLLNEQQRVRNKKIVMR 564 Query: 152 -IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G LY +A I + R+ I ++ + + E Sbjct: 565 SKSGGLLYGL--FSAELIRLQQRDLLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEF 622 Query: 211 KKGHS 215 S Sbjct: 623 LANMS 627 >gi|254561704|ref|YP_003068799.1| histidine kinase [Methylobacterium extorquens DM4] gi|254268982|emb|CAX24943.1| putative histidine kinase with HK Homodimeric domain, ATPase domain and a sensory PAS domain [Methylobacterium extorquens DM4] Length = 842 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 176/781 (22%), Positives = 298/781 (38%), Gaps = 82/781 (10%) Query: 34 FETEKSKKENPCHDS--FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 F++ +K + P DS + + +R W DA Sbjct: 137 FDSGPAKADPPPADSGPDVAKPEVSSPSPAPE------------VETAELPLRVIWRSDA 184 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G L +S P A + G ++ I+ + + L + T+ L Sbjct: 185 DGVLTHVSRTHPDL----AEALSGRSWAMLAADGVIEGA-ALTEALASRRTFRTLPLL-- 237 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + G ++++ P +FSGF GF I+ R RA+ D + E Sbjct: 238 VRGRAFEHALEISGAPAGRSTDDFSGFGGFAILGERRARVMERAVEDEEDGPENLQEEAS 297 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 ++ E + + + + + E P + +P Sbjct: 298 VDETAAESGLSVNEHAAFREVARVLGLRFAPDEDGDDAPPPPARVESAPSGSVMPFPIP- 356 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 LS E ++ P+ Sbjct: 357 ------------------------------------QGRLSEAETRARLALTELLESLPL 380 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 VY + +A+ +FL LT Y + + A GL+ L D PV R + Sbjct: 381 GVLVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREITGPVPFARPEG 439 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 +A + W + A + I + Sbjct: 440 GTVALLVDRAGLVWEGAQAEICLARAMPAAG-------------DIQLPAIPANAARLRA 486 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + +L++ DG+ ++ EG ++ N + ++L ++++ F + S + Sbjct: 487 EK---VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPESLSALET 543 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--- 568 +T+ + L LRI + Y ++ +I + Sbjct: 544 AVTDSRRSGTSEVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDEDAAPPVP 600 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 ++ E E K++ LARVS EIR L AI+G ++++ + RF R Y Sbjct: 601 VAEPARRREPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAERLEAYLR 660 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + SG + +++DL D+++I++G+ L F ++L+E V+ I+ Q A RI++RT Sbjct: 661 EVRLSGGRIAALIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARDRIVLRT 720 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 S A N+P + AD RS++Q AL +L NAI T +GGQ+I+STT EV LRVRDTG GM Sbjct: 721 SLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGM 780 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 T EL A++PFG G+ G GL L KA+V+AN G+F I S +GTL+E++F Sbjct: 781 TEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGTLVEMLF 839 Query: 809 P 809 P Sbjct: 840 P 840 >gi|289432105|ref|YP_003461978.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288945825|gb|ADC73522.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 1062 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 111/763 (14%), Positives = 246/763 (32%), Gaps = 66/763 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNT----W 143 ++A + +I++ + +G +++G + + + Sbjct: 326 LNADETISQINKRGCQILGYEYQEIVGQNWFEKFIPGYRRLIKRSMYKQIISGKADLPER 385 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 Y L + + + + I +++ + G + ++K Sbjct: 386 YMDVILTKNDQEKVILW---HSTAIRNKDGQIVSILYSG--EDVTELKHTEEALRMSEEK 440 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + L E + +K I + K++ L A E ++ Sbjct: 441 YHTLFETMAQGAIYVNDKGTIIETNPAANAIFGKHESELLGTNIADPARTYVHEDGSIMP 500 Query: 264 SEESSLPEQEDFHTI------------NLNQYTKKQYFGTL-----QNNSKESFEYLSHR 306 E+ + + + + L +N+ + Sbjct: 501 PGENPVIVALKTGKAVRNVFMGIKNNRSDDIRWVNLFALPLFHINQENSYMVYTTFTDIS 560 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + EN + + +G + N + Y + + Sbjct: 561 RLKNARDALTRSENRYRSIFETAASIIISFDPNGIINDCNMRIEEILGYTPAEILGTN-- 618 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + ++ I + + + + ++ Sbjct: 619 ----FLDIIEDSFREEIRKHIASLNQGDIIYNKDCRMLHKDG-QYRDVMVNCSTLIDEHG 673 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL- 484 + + I + + + ++ S+ ++GI +++ +G I N+ + K+ Sbjct: 674 IVLNEICIITDITQQKQTNYALIASEEKIRSMFNGVNEGIVVMDAKGYITEINQTMLKMN 733 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + ++ + F+ YLT+ L+ + LE L S E + Sbjct: 734 HCTSKDQLIGRHGLEFIAPKDREEARAYLTQADHLNEVRNLELRCLRSDGTEYFSQISGA 793 Query: 545 IKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E KQ + +L ++A + + ++HEI PLT Sbjct: 794 VLRGYAGEIQGIIILSVDITERKQMEQQLIMTDRMA-----SVGELASGLAHEINNPLTG 848 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+GFSE+ E I R +IV +LL ++ + E Sbjct: 849 IVGFSEL----LLMNELEESIKEDIQTIHREALRAAEIVRNLLTFAR----QHTPTREAS 900 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IH 717 ++ +V + + L + I T ++PR++ D ++Q+ +NI+ NA + Sbjct: 901 DINLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVMLDFFQIQQVLINIIINAEFFLRLK 960 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 QI I T+ N VI+ + D G G++ +++ PF G+GTGLG Sbjct: 961 ---DHPQITIKTS-QHNGYVIISISDNGPGISPENMKRIFDPFFTTK----EVGKGTGLG 1012 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHPHD 818 L + +++ + GK + ST G I P D + P D Sbjct: 1013 LSICHGIIEEHHGKISVESTLGNGATFRIELPFADIKPASPAD 1055 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 5/159 (3%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + +M+ E + L+ I ++N + I N+ ++ GY ++I+ Sbjct: 292 IRHRQEIAKTETRMKEERDKAQLYLDIAGVIIVVLNADETISQINKRGCQILGYEYQEIV 351 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550 + + ++ + + + E+ + L +EK++ + Sbjct: 352 GQNWFEKFIPGYRRLIKRSMYKQIISGKADLPERYMDVILTKNDQEKVILWHSTAIRNKD 411 Query: 551 SSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSD 587 S+ D++E K + L +++ + Sbjct: 412 GQIVSILYSGEDVTELKHTEEALRMSEEKYHTLFETMAQ 450 >gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii NCTC 11218] Length = 1268 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 132/672 (19%), Positives = 234/672 (34%), Gaps = 45/672 (6%) Query: 168 IYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 EF G RGFG++ + D ++ H ++ +F Sbjct: 97 TRDYPLEFPGARGFGLIRFILPDQKDAFVAKAAAERPDQHY-----DIRTLTPHNDSLFL 151 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 Q P R + V + + D + + + Sbjct: 152 IQYIEPENRNREAVGLDIGSESMRRDAALNAARYNEVRLTAPITLVQASKKTKQGFLILM 211 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346 + ++ DE + D + ++G P Sbjct: 212 PIYQHNDVPARIDQRLQELAGWSYAPILIDEVLSSVSGLKDDVSLSIADVTNGAPQ---P 268 Query: 347 SFLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAAS 397 F T + L D + + + Sbjct: 269 FFSRGTNEADTPYQTQQIIWLFGRDWALNLTAKQSFVDSLPLPPNEYIYREILGSTLVIV 328 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + ++Q E A + + + + E + +I MQ +I Sbjct: 329 LIVFSLQLVTTRRAQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQ-RTI 387 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTE 515 L + I + +GII N + KL GY +++ P L + + E Sbjct: 388 LSSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQE 447 Query: 516 ILSLDLRQTLEKITLGS------------TKEEKLLSLRIIIKKLPFSS----CYSLTMH 559 + + K + +R+I+ L Y + Sbjct: 448 LGETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIPIRLIVSCLLDDHQEPVGYLGIAY 507 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E Q + +L+ AK++AE+ + KSDFLA +SHE+RTP+ AI+G ++ +N Sbjct: 508 DLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL---- 563 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + +Y N + +L ++ND+LD SK+E+GKM + +P SL E + E L+ Sbjct: 564 NKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNL 623 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE- 736 K + I ++P ++ D ++QI LN+ NAI FT +G ++ I T + Sbjct: 624 QHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTESHDGDRC 683 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+GMT + + F Q +S R GTGLGL + K +V G + Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743 Query: 796 STPAKGTLIEII 807 S G+ Sbjct: 744 SKQGVGSEFSFT 755 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 56/214 (26%), Gaps = 26/214 (12%) Query: 36 TEKSKKENPCH---DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92 + +K E + + Q+ T + N + D Sbjct: 342 AQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQRTILSSAGYAIIASDLD 401 Query: 93 GYLKEISEELPKTIGNYAFKMIG-------MRLCDVSDI---------LHIDPNNHIGDL 136 G + + K +G A +M+G + +V+ I P + Sbjct: 402 GIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQELGETIHPGFDVFVA 461 Query: 137 LKRQNTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 K + + T G ++ + + ++ L ++E G+ G I + Sbjct: 462 -KARLGFVDITRWTYVHKNGHHIPIRLIVSCL--LDDHQEPVGYLG--IAYDLTETLQRE 516 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 517 KELAEAKELAEQANRAKSDFLANMSHELRTPMNA 550 >gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str. Toulouse] gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str. Toulouse] Length = 773 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 121/506 (23%), Positives = 221/506 (43%), Gaps = 53/506 (10%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + + Y D + ++ ++ + + + +M + I Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQITGIISPNDANFFDLAQELMSGKKKHIDINV----- 339 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + M + P GI + + + +++ +E Sbjct: 340 PMRHADGHYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFAEETAQADLRIRDAIENI 396 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ + + EG ++ +N + P + + +E +N Y + Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQILQPGIQRETVEAMARPAINEYPLKDDGTG- 455 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570 ++ T + L + ++ DISE KQ++ K Sbjct: 456 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508 Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 L K+ AE + KS+FLA +SHE+RTPL AI+GF Sbjct: 509 IQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ FGPLG+ RY EY I SG+ +L ++ND+LD+SKIE+G+ + + + L+ Sbjct: 569 SDIMLQSTFGPLGSKRYKEYMRDIYNSGSHLLTLINDILDMSKIEAGRFTVDCKNIDLEP 628 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SEA+ + A EK I + T+ A + D R++KQI LN++SNA+ FTPSGG I Sbjct: 629 IISEALRTLIPQAQEKNIFVTTNIATKL-HAEVDGRAIKQIFLNLISNAVKFTPSGGNID 687 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + ++ +++DTGVG+ ++K +PF Q+ N G+GLGL +++++++ Sbjct: 688 V-CALKKKNNLVFKIKDTGVGIPQSAIKKLGQPFEQVENQLTKTYTGSGLGLAISRSLLE 746 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812 + GK I S KGT + I P+ Sbjct: 747 LHKGKLEIISKEMKGTTVTITIPIKQ 772 >gi|212639830|ref|YP_002316350.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212561310|gb|ACJ34365.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 729 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 110/734 (14%), Positives = 248/734 (33%), Gaps = 73/734 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYGKTT 148 G +++E + +++ + L++ P + + +L++ + + Sbjct: 49 DGTFVDVNEAACRLFRASKEQLLQKNFEE---YLYLVPEHIVRFQIQMLRKFKAYDDELI 105 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G +V + + + F+ + ++ + F L Sbjct: 106 IRLADGEIKHVQLFM----RRYNEQPFNLY----MIRDITSKKVLERERTINETLFKDLF 157 Query: 209 EIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + E+ K ++ L+ + + LLT + Sbjct: 158 NRAGDCIVIFDEQGRFIDANPSFCASVNVSKEELFKLSMQTFIPIEYYDVFEQLLLTLKR 217 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPET 325 + E + + T +S + + E Sbjct: 218 TGTVSSELPFILGDGMQKLFELTLTANVHSGFFMAIMRNVTEKRSMEMNLQRSEERFRAI 277 Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD--------IEIAGGLSTLLDAPKLS 376 ++ + GN+ ANP+ + D I+ + Sbjct: 278 FEQAHEAILICDDFGNILRANPAASRTFELPLHDLVHANLMQFIDGKNEKVRRVLRQFFR 337 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D + + + + N I Sbjct: 338 DGEIREELTFHMPNGEKKQLEFTSKKGVING---------------------YHLTIFRN 376 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R ++++ + + ++ DGI +++ E I N ++F E ++ K Sbjct: 377 VSERRKMEKQLREQEQKFRNVFNHAMDGIVLMDNEKRIFDANPVACRIFALSKEQLMEKR 436 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 F+ + +L + + + K++ L + + Sbjct: 437 LHTFIGSSDLHKFQTWLNNGEEEEQFTITDGE-----GKTKIVELSFKPNIIEHVG--LM 489 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+E K+ + +L + ++ A ++HEIR P+TA+ GF ++++ Sbjct: 490 MVRDITEKKEMEEQLRKSDTLSVV-----GQLAAGIAHEIRNPMTALKGFIQLLQGSIGN 544 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +Y Y + I + I+ + L ++K ++ +H+E + + + E + L+ Sbjct: 545 --DCEQYNMYFHVIMSELKRIESIITEFLVLAKPQA----VHYERGDVAKIMQETVDLLS 598 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + A I I ++ +P I D + +KQ+ +NIL NAI P GG I +S H + Sbjct: 599 VQATMHNIQIEATYEP-VPPIYCDPKQLKQVFINILKNAIEVMPKGGTITVSVAHVAEG- 656 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + VRD G G+ +++K +PF + GTGLGL ++ +++ + G+ + S Sbjct: 657 VRIAVRDEGSGIPKDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHQGRIDVES 710 Query: 797 TPAKGTLIEIIFPL 810 GT I P+ Sbjct: 711 EVGVGTTFYITLPI 724 Score = 95.1 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 30/288 (10%), Positives = 72/288 (25%), Gaps = 24/288 (8%) Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 D N+ + + V G N + L + S + + Sbjct: 19 IQEKEAIDRRINMYDFILQQVTDAIVLVKDDGTFVDVNEAACRLFR-ASKEQLLQKNFEE 77 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L P+ V A I+ + ++ E Sbjct: 78 YLYLVPEH-------IVRFQIQMLRKFKAYDDELIIRLADGEIKHVQLF----MRRYNEQ 126 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + ++ +R+ I + D I I + +G + N + Sbjct: 127 PFNLYMIRDITSKKVLERERTINETLFKDLFNRAGDCIVIFDEQGRFIDANPSFCASVNV 186 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E++ + F+ V L + + + + + Sbjct: 187 SKEELFKLSMQTFIPIEYYDVFEQLLLTLKRTGTVSS---ELPFILGDGMQKLFELTLTA 243 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 S + M +++E + + L +++ +HE Sbjct: 244 NVHSGFFMAIMRNVTEKRSMEMNLQRSEERFRAIFEQ--------AHE 283 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 39/368 (10%), Positives = 98/368 (26%), Gaps = 35/368 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + ++ ++ + + I + D + LKR T + Sbjct: 168 DEQGRFIDANPSFCASVNVSKEELFKLSMQTFIPIEYYDVFEQLLLTLKRTGTVSSELPF 227 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207 +G + L A GF I+ +R +++F + Sbjct: 228 ILGDGMQKLFELTLTANVH----------SGFFMAIMRNVTEKRSMEMNLQRSEERFRAI 277 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLT 263 E + + +I L + + V ++L ++ K++ ++ Sbjct: 278 FEQAHEAILICDDFGNILRANPAASRTFELPLHDLVHANLMQFIDGKNEKVRRVLRQFFR 337 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + E+ FH N + + N + + + E E Sbjct: 338 DGE--IREELTFHMPNGEKKQLEFTSKKGVINGYHLTIFRNVSERRKMEKQLREQEQKFR 395 Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + + +F ANP + +E L SD + + Sbjct: 396 NVFNHAMDGIVLMDNEKRIFDANPVACRIFALSKEQLMEK-----RLHTFIGSSDLHKFQ 450 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + + E + + + + + Sbjct: 451 TWLNNGEEEEQFTIT--------DGEGKTKIV---ELSFKPNIIEHVGLMMVRDITEKKE 499 Query: 443 NKRKMEIE 450 + ++ Sbjct: 500 MEEQLRKS 507 >gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1075 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 118/547 (21%), Positives = 211/547 (38%), Gaps = 52/547 (9%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDD 359 + + A + E +K P P +++ + N + + Y D Sbjct: 298 VTDITHQKNAEARLKKSEQDHRLLFNKNPHPMLIFATDNLQILAVNDTMVEKYGYTKED- 356 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 L D + + ++ R + + + Sbjct: 357 ----------FAQMSLRDLCWAEDIPCLEANLNQAKDVTRSRHCLKDG----TLINVDIS 402 Query: 420 KANQF-PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + + + + + ++++ +L ++L+ GI + + + + N Sbjct: 403 GRDILYNNQAARLVLIQDVTEKLKAENELQLTSSRLKALLQNMQAGILLEDAQRKVALAN 462 Query: 479 RAVSKLFGYP--VEDILRKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKI--T 529 +F P E++ F E + +IL+ E++ Sbjct: 463 PVFCDMFDVPVPPEELKGLDCAPFAELSKGFFTNSDTFISVINDILTARNIVLGEELELV 522 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 G E + + + L + D+S K+ + L A+K AE+ S K FL Sbjct: 523 DGRVYERDYIPVFSNEEYL----GHLWQYRDVSNKKKAQKVLIQARKKAEESSLAKERFL 578 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTPL AIIG ++ R Y + I S + +L I+ND+LDISK Sbjct: 579 ANMSHEIRTPLNAIIGMQRLLSKTSL----EERQQRYLDAIGTSADNLLVIINDILDISK 634 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIA 708 IE+GK+ L L + + + + A EK I + + +N+ P +L D + QI Sbjct: 635 IEAGKLELENVGFDLCKLIRHLVFTLGYKAEEKGIGLYANIDDNMHPIVLGDSVRLHQIL 694 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764 LN+L+NAI FT G ++IIST+ V V DTG G+ +E + F Q Sbjct: 695 LNLLNNAIKFTDVG-KVIISTSLVEANPDTQTVCFEVSDTGRGIKAENIEAVFESFTQED 753 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-----------PLYDT 813 S + G+GLGL + + +V+ GK + S +KGT P+++ Sbjct: 754 ASITRKFGGSGLGLAIGRQLVELFGGKLTVTSEYSKGTTFSFTLTFKKETLDAIAPVHEV 813 Query: 814 SHPHDCI 820 + + I Sbjct: 814 TQEGEKI 820 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 51/144 (35%), Gaps = 6/144 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++++ + M +++E DG+ I E I+ N + +L GY + ++L + Sbjct: 178 RLKMEKQLHEKDMLYRTMVEKLQDGLIITTPESDIIFANPRMEELSGYKLSEMLHRKTYE 237 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555 V+ + ++ ++ + K+ + + Sbjct: 238 LFIAEDKQVLLN--EKLQGRREGRSDKYEIEQVRKDGTCWQSLVNATPYYNDANEMIGIM 295 Query: 556 LTMHDISEWKQEKNKLSHAKKIAE 579 + DI+ K + +L +++ Sbjct: 296 ALVTDITHQKNAEARLKKSEQDHR 319 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 26/283 (9%), Positives = 67/283 (23%), Gaps = 17/283 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYGKT 147 + + + + G +M+ + ++ D + + L+ + + + Sbjct: 208 PESDIIFANPRMEELSGYKLSEMLHRKTYELFIAE--DKQVLLNEKLQGRREGRSDKYEI 265 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT + A P Y+ E G +V + A K+ ++ L Sbjct: 266 EQVRKDGTCWQSLV--NATPYYNDANEMIGIM--ALVTDITHQKNAEARLKKSEQDHRLL 321 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + D + + K + D+ E P L + + Sbjct: 322 FNKNPHPMLI--FATDNLQILAVNDTMVEKYGYTKEDFAQMSLRDLCWAEDIPCLEANLN 379 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTP 323 + + L + Sbjct: 380 QAKDVTRSRHCLKDGTLINVDISGRDILYNNQAARLVLIQDVTEKLKAENELQLTSSRLK 439 Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAG 364 + + + ANP F + ++++ Sbjct: 440 ALLQNMQAGILLEDAQRKVALANPVFCDMFDVPVPPEELKGLD 482 >gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio sp. FW1012B] Length = 1507 Score = 351 bits (901), Expect = 3e-94, Method: Composition-based stats. Identities = 104/557 (18%), Positives = 215/557 (38%), Gaps = 38/557 (6%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E++ + T+ + ++ + ++ + + + Sbjct: 831 ERQLVGQADQRILTRVIPYRSINDRIDGVVLTFMDVTSAVAAEKRLSQQTEELETLYKTI 890 Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 P +F V G + N + S + + + R Sbjct: 891 PDIYFKVAPDGTIL--NCRSTHQPDIIPDATLVAGKHFSEIFGPE--HGATLEEALQEAR 946 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + N+ + A + + + + + ++ Sbjct: 947 EADAQRSLDLHFVA----HGNNRHLEVRIVPVAAET------FVVMRDMTGLKQAEDRLR 996 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + +L SD + ++ G I+ N ++ P E + +P F Sbjct: 997 FQAD----VLSQVSDALIAVDEAGSIILWNPGAERILEIPAERAMGQPLEAFTGIKWIMA 1052 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 + + RQ K + + + + + L + + D+S+ Sbjct: 1053 DDAAADR---PEDRQLWIKEFDHARADGSHIVVESSVSVLRDTRGNRIGLLAILRDVSDN 1109 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L AK+ AE+ + KS+FLA +SHEIRTP+ I+G +++ N+ Sbjct: 1110 KRFAKELLEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNRDL----PDDVR 1165 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ + +SG +LDI+ND+LD+SKIE+G++ L +P L E V + + L A +K + Sbjct: 1166 EFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLGLLARDKGL 1225 Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVI 738 S A +P ++ D ++QI N++ NAI FT G ++ + ++ Sbjct: 1226 TFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKRG-RVEVKVRLAEIQEPGRASLL 1284 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++D G+G+++ ++ + F QI +S ++ GTGLGL ++KA+V+ G + S Sbjct: 1285 FLIKDEGIGISSAQIHSIFEKFEQIASSAHVQYGGTGLGLAISKALVEMMGGVIQVESEL 1344 Query: 799 AKGTLIEIIFPLYDTSH 815 +G+ + L + Sbjct: 1345 HRGSTFSFVLTLEKVAE 1361 >gi|73748079|ref|YP_307318.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659795|emb|CAI82402.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 1062 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 111/761 (14%), Positives = 246/761 (32%), Gaps = 62/761 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQ--NTWYG 145 ++A + +I++ + +G +++G + + + + Sbjct: 326 LNADETISQINKRGCQILGYEYQEIVGQNWFEKFIPGYRRLIKRSMYKQIISGKADLPER 385 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + V I + I +++ + G + ++K+ Sbjct: 386 YMDVILTKNDQEKV-ILWHSTAIRNKDGQIVSILYSG--EDVTELKHTEEALRMSEEKYH 442 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L E + +K I + K++ L A E ++ Sbjct: 443 TLFETMAQGAIYVNDKGTIIETNPAANAIFGKHESELLGTNIADPARTYVHEDGSIMPPG 502 Query: 266 ESSLPEQEDFHTI------------NLNQYTKKQYFGTL-----QNNSKESFEYLSHRNH 308 E+ + + + + L +N+ + Sbjct: 503 ENPVIVALKTGKAVRNVFMGIKNNRSDDIRWVNLFALPLFHINQENSYMVYTTFTDISRL 562 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + EN + + +G + N + Y + + Sbjct: 563 KNARDALTRSENRYRSIFETAASIIISFDPNGIINDCNMRIEEILGYTPAEILGTN---- 618 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + ++ I + + + + ++ Sbjct: 619 --FLDIIEDSFREEIRKHIASLNQGDIIYNKDCRMLHKDG-QYRDVMVNCSTLIDEHGIV 675 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL-FG 486 + + I + + + ++ S+ ++GI +++ +G I N+ + K+ Sbjct: 676 LNEICIITDITQQKQTNYALIASEEKIRSMFNGVNEGIVVMDAKGYITEINQTMLKMNHC 735 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + ++ + F+ YLT+ L+ + LE L S E + + Sbjct: 736 TSKDQLIGRHGLEFIAPKDREEARAYLTQADHLNEVRNLELRCLRSDGTEYFSQISGAVL 795 Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + DI+E KQ + +L ++A + + ++HEI PLT I+ Sbjct: 796 RGYAGEIQGIIILSVDITERKQMEQQLIMTDRMA-----SVGELASGLAHEINNPLTGIV 850 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE+ E I R +IV +LL ++ + E + Sbjct: 851 GFSEL----LLMNELEESIKEDIQTIHREALRAAEIVRNLLTFAR----QHTPTREAGDI 902 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IHFT 719 + +V + + L + I T ++PR++ D ++Q+ +NI+ NA + Sbjct: 903 NLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVMLDFFQIQQVLINIIINAEFFLRLK-- 960 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 QI I T+ N VI+ + D G G++ +++ PF G+GTGLGL Sbjct: 961 -DHPQITIKTS-QHNGYVIISISDNGPGISPENMKRIFDPFFTTK----EVGKGTGLGLS 1014 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHPHD 818 + +++ + GK + ST G I P D + P D Sbjct: 1015 ICHGIIEEHHGKISVESTLGNGATFRIELPFADIKPASPAD 1055 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 5/159 (3%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + +M+ E + L+ I ++N + I N+ ++ GY ++I+ Sbjct: 292 IRHRQEIAKTETRMKEERDKAQLYLDIAGVIIVVLNADETISQINKRGCQILGYEYQEIV 351 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550 + + ++ + + + E+ + L +EK++ + Sbjct: 352 GQNWFEKFIPGYRRLIKRSMYKQIISGKADLPERYMDVILTKNDQEKVILWHSTAIRNKD 411 Query: 551 SSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSD 587 S+ D++E K + L +++ + Sbjct: 412 GQIVSILYSGEDVTELKHTEEALRMSEEKYHTLFETMAQ 450 >gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 850 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 112/574 (19%), Positives = 217/574 (37%), Gaps = 37/574 (6%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317 + + EE L + +L+ + ++N + S ++ Sbjct: 29 MKSGEEKGLIKDTVLVKKDLSIFFISAKISPVKNEENIICGMVIVFRDISRLRSIEDKLS 88 Query: 318 -GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + P+ V + N S L + + + + I G + Sbjct: 89 FEEKKFKTIYETAPVGMLVVDEKLIIRDINKSMLNIIEKEIDECIGRRFGDGIGCINSFI 148 Query: 376 S-------------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + R++ A I N + L I + Sbjct: 149 ANGCGKSEKCFECLTAETLTDFFRNRTEFVDFEVEAE---ILLNGKPVLKWFKIYVTNTD 205 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 N I+ + + ++ + + S+ + I N Sbjct: 206 IVGLNDCLLVID-DITEKKLMEDAIIRSRDYYISLFDNFPALIWRTGVGSKCDYFNNNWL 264 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 G +E L +T + + + + L+ + +R Sbjct: 265 AFTGRSIEQELGAGWTEGIHHDDLKKCKDVFWDSFNKRGA--LQVEFRLRYNDGSYHWVR 322 Query: 543 IIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 I + + Y + DISE K +L+ +K+ AE + KS FLA +SHEIRT Sbjct: 323 NIGHPIYDLKGEFAGYIGAVFDISEHKSMMEELNKSKEEAEAANKAKSQFLANMSHEIRT 382 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL ++G + + N + + +L ++N++LD SKIE+GK+ L Sbjct: 383 PLNGMVG----MIDLTLMSDLNNEQRDNLETAKSCVDSLLKLINEILDFSKIEAGKLELV 438 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 L++ + + + ++ A E +++ S ++++P I+ D +KQ+ N+LSNA+ Sbjct: 439 NSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSISSDLPEYIIGDQLRIKQVLNNLLSNALK 498 Query: 718 FTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT +G ++ I+T ++E ++ V DTGVG+ + ++EK K F Q+ NS + GT Sbjct: 499 FTEAGSINLKVDINT-IDNDEFILFEVSDTGVGIADEDMEKLFKSFSQVDNSYTRKYNGT 557 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GLGL ++K +++ G +I S G+ Sbjct: 558 GLGLAISKRLIEKMGGSIWIKSEKGIGSTFSFTI 591 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 5/142 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143 W + G + +G + + + D ++ Sbjct: 246 LIWRTGVGSKCDYFNNNWLAFTGRSIEQELGAGWTEGIHHDDLKKCKDVFWDSFNKRGAL 305 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L +G+ Y + PIY EF+G+ G V + ++ Sbjct: 306 QVEFRLRYNDGS--YHWVRNIGHPIYDLKGEFAGY--IGAVFDISEHKSMMEELNKSKEE 361 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 362 AEAANKAKSQFLANMSHEIRTP 383 >gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 769 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 138/685 (20%), Positives = 265/685 (38%), Gaps = 71/685 (10%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 G+V ++R + L L H V I ++ + N+ Sbjct: 90 IGVVRLDRPASI-ERLQNLLPALIPSWGIAAGRHVIVTSADQRILARVPIGGAPAVDNRF 148 Query: 241 SSLTEYYAHKDDVLKTEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + A + + L S+L ++ ++ G++ + Sbjct: 149 FEVLGAAALTKAGQQGGIVEIVLPGGASALATMHVVKSLPGQVVIVQEDTGSVLRSDTAL 208 Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340 L D + +++ + + G Sbjct: 209 QVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGR 268 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + + S + +S +D+ G ++ L+ + ++ R D + R Sbjct: 269 I-FWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFEIADELVAGRVDHIDRSFQMRH 327 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 W + + + GI + + + + ++L +E Sbjct: 328 AQGHW-----IWLRMRCELSQEAGSADKHLIGIAVDITEQKSLAERSVEADLRLRDAIET 382 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSL 519 + + + E ++ N +L P + + LE + T + Sbjct: 383 IPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVSPGTSYETILEVGRMPQLR---TRLCDN 439 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574 + + K L + ++ Y DI+ K + KL Sbjct: 440 GGVAPGARTFEAQLDDGKWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLR 496 Query: 575 ------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAII 604 K+ AE+ + KS FLA +SHE+RTPL AII Sbjct: 497 ATVADLKITQTKLEKQAHQLADLARKYGDEKRRAEEANQTKSKFLANMSHELRTPLNAII 556 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+G+M L EP+ L Sbjct: 557 GFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDL 616 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + E++ +V A K + +R + IP I+AD R++KQI +N+LSNA+ FTP G+ Sbjct: 617 SKTIGESLKVVAGRAEHKHLDLRAEVGDQIP-IVADRRAIKQILINLLSNAVKFTPDAGR 675 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + + + ++L + DTG+G+ L + +PF Q+ + G+GLGL +AK++ Sbjct: 676 VTVRSRI-AGDSIVLMIADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSL 734 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+ + G + ST +GT++ + P Sbjct: 735 VNLHGGSMRLRSTLGEGTVVMVSLP 759 >gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter propionicus DSM 2379] Length = 587 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 105/567 (18%), Positives = 208/567 (36%), Gaps = 37/567 (6%) Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN-- 307 L E + + T G ++ +S S LSH Sbjct: 44 SQTRLAKLLAEQERDTMPPQQLAERIGSAIKARVTLIDRSGLVRGDSDVSKVELSHLENH 103 Query: 308 --HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 P + G + + + G + +N + + ++ + A Sbjct: 104 LKRPEVVQAMQGGIGSSLRYSETLKTDMLYTALG--YESNGHYGFIRLSLPLERLSSATA 161 Query: 366 LSTLL----DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + L A ++ + R + I + E S P Sbjct: 162 ALHRMTAGSVGMALLAALAFSLLLSRVTSRPLREMAEVAARIGRDGEYSRI----PVASQ 217 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ E +D ++ ++ E +L +IL +G+ + + +G I N A Sbjct: 218 DEIGALASVLNDMAERIDAQM--HGLDAEKTRLDAILRGMGEGVMVASADGAITLVNPAF 275 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 K+F +K V + + + L + + LL+ Sbjct: 276 RKMFAMTDGVEGKKLIEVCRNPDLQAAFHDL------ARCGGELSREIRIQPGDVTLLTH 329 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + HDI++ K + + DF+A VSHE+RTP++ Sbjct: 330 WVPLAMDGAGQGVVAVFHDITDMKHVEE--------------MRRDFVANVSHELRTPVS 375 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 I G++E + + I R + ++ND+L +S +E+ L Sbjct: 376 VIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLINDILTLSCLEARNSALELNA 435 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + + ++++ +L+ A EK+I + NN+PR L D ++Q+ +N++ NA+ +TP Sbjct: 436 MDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQGRLEQVLVNLIDNAVKYTPE 495 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG I + + + V+D+G+G+ +L + + F ++ + GTGLGL +A Sbjct: 496 GGTIRLFAE-QGETFLRISVQDSGIGIPPRDLPRIFERFYRVDEGRSREQGGTGLGLAIA 554 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808 K +V + G+ + STP KG+ Sbjct: 555 KHIVQLHGGELTVTSTPGKGSTFSFTL 581 >gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity ['Nostoc azollae' 0708] Length = 1407 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 116/584 (19%), Positives = 230/584 (39%), Gaps = 31/584 (5%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++++S +Y + + L + E L E+ H+ N T K+ Sbjct: 680 HELTSTKDYLQSIIEEQQASNQDLRAANEEILSSNEELHSTNEELETAKEEIQATNEELN 739 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + L RN + D + + V S + N + ++ Sbjct: 740 SINDELQRRNIEATLVSNDLQNLFSSINISIL----MVGSDLKIRCFNIAAEIIFNLIPT 795 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 D + L P L + + + P Sbjct: 796 DKGRPLSNIKHKLKVPNLEAKIVEVISTSNLKTQEVQDL----------DGHWYDLRIRP 845 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + I + D R N ++ +I+ + + +++ + +++ Sbjct: 846 YRTIDNKID--GAVVILVDIDDIRRNANILKSFREYAAAIVSTVRESLVVMDVDLKVVTA 903 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEIL-SLDLRQTLEKITLGSTKE 535 N+ + F ++ + + + L + + Q +E Sbjct: 904 NQFFYEAFQVGAKETENRLIYEIGDGQWNIPQLRSLLEDTIPQQGQFQDVEIEHDFEQIG 963 Query: 536 EKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSD 587 K++ L I ++ + L + DI++ KQ + + + A+ AE + K + Sbjct: 964 HKIMRLNGRKITQIGDTPMIILVIEDITQRKQLEAERTQLLAQEQSARTAAETANCAKDE 1023 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FL+ +SHE+R PL ++G++++++ Q+ L + + I+RS ++ DLLDI Sbjct: 1024 FLSVLSHELRNPLNCLLGWTQLLRKQQ---LDEAKTNQALEAIERSAKAQHQLIGDLLDI 1080 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S+I G+M L +PV L + AI +VQL A+ K I I++ + ++ D ++Q+ Sbjct: 1081 SRISVGQMRLEAQPVKLIPVIEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQV 1140 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+LSN+I FTP GG+I I+ ++ + ++VRDTGVG++ L F Q S Sbjct: 1141 IWNLLSNSIKFTPVGGRIDITLDYSPFQG-EIQVRDTGVGISADFLPYIFDRFRQADRSP 1199 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 G GLGL + + +V+ + G + S +G + PL Sbjct: 1200 TRSNTGLGLGLSIVRHLVELHGGTVEVTSPGEGQGATFTVRLPL 1243 >gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1521 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 117/741 (15%), Positives = 244/741 (32%), Gaps = 39/741 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142 + G ++ L + G + + + D++ + DP + + L++ Sbjct: 655 LYQSTPQGRFVSVNPALVRLTGYDSPQEFMDAITDITTQFYYDPKDRDRLVQALIQHGEV 714 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + G + + + + E F G I + Sbjct: 715 RQFEILIRRKGGGT--LWVSINSRLSRGLGNEPELFEGSII--DITGRKRVEEALRLTQF 770 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + +Y + ++ + ++T T Sbjct: 771 SVDMAP--VSIYWIDRSGRYVYVNDHGCSSLGYGQDDLLAMTVSDICPLFSPDTWAEYWN 828 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + E H + + + + + + + ++ + Sbjct: 829 ARRLEDIRRFETVHRCRDGRELPVEIVSHYKVYGGKEY-LFVYAYDLTERHQAEQALRWS 887 Query: 323 PETVDKCP----IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E +++ + + + L + A + +L+ S Sbjct: 888 RELLNEVQRISLTGGWEHDLDTGANHWTDGQFRLFGLEPD---GSAPDIGHILNRHIHSG 944 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + R ++ + + + + + G + Sbjct: 945 DTPRLVEAWTSLLRDMRPVEVEFRCLRDDGSQGVLVGV-AIPETDGRGRLRRVFGSTRDV 1003 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRK 495 R R++ +L +IL+ I + ++ +L N + + +G +D L Sbjct: 1004 TQERQAARELAQSHERLLTILDGIDANIYVSELDSH-EVLFMNAHIQETYGTSGQDSLCH 1062 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 L + +L+ TL + L+ I+ L Sbjct: 1063 EI---LRGESRQCQVCPKPALLNGRGAPVGTLVREWHSQITGRWYLNHDRAIEWLEGRLV 1119 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + DI++ K + +L A AE S K++FLA +SHEIRTP + + Sbjct: 1120 HMHMATDITDLKVMEQELKRAMAKAEAASLAKNEFLANMSHEIRTP----LNGLLGMLQL 1175 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + E+ SG +L I+ND+LDISKIESGK+ L + + L E ++ Sbjct: 1176 LQLTILGGEQREFLEIALSSGRSLLQILNDILDISKIESGKLELDDQELDLGEVAESVVA 1235 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 + + A + I + +PR LAD ++QI N++ NA FT SG +++ Sbjct: 1236 VFRHQARMRGIEVALVMDKTLPRHFLADKVRLRQILFNLVGNATKFTESGS-VLVEAYPL 1294 Query: 732 -----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ V DTG+G+ + ++++ PF Q+ S + +GTGLGL + + +V Sbjct: 1295 AHPMPDGRAQLFFSVSDTGIGIPDDKMDQIFDPFTQVDGSFTRKYQGTGLGLGIVRRLVA 1354 Query: 787 ANMGKFYIFSTPAKGTLIEII 807 G + S GT + Sbjct: 1355 LMGGTIAVDSELGAGTTVVFT 1375 Score = 200 bits (509), Expect = 7e-49, Method: Composition-based stats. Identities = 55/504 (10%), Positives = 135/504 (26%), Gaps = 27/504 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQN 141 W +D +S + + G ++G + L ++ + + + R Sbjct: 153 VWTVDNDLRYTYVSPSVGRLRGIVPEDVVGRCVDQFVTPQTLPLVLEALDGVRRAVARGE 212 Query: 142 TWYGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 ++ V ++ A P+ GF G + +R Sbjct: 213 RSPLARMELEVQHADGSAVWVEAVARPLLDHAGACVGF--IGSTRSIGDRREVEQRLRRN 270 Query: 201 DKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 ++ L + + I + + + L+ + + +++ + Sbjct: 271 ERALRALLDATVEDVGLYGTDGTISIINGNMAARLDLDPEEAAGLSLFDHLPQERVESWR 330 Query: 259 YPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ P H T FG + E Sbjct: 331 ESFRQVAQTGRPVSRKGHLKGRHFDLTLYPVFGQDGEVDGVAIFAKDTTERTRAEEALRE 390 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E ++ G + +AN + + + D I P L Sbjct: 391 SEARYRRMLETANEGILSMDADGRIAFANQTMVDFMGHDFEDIIGATL--------PDLM 442 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + ++ + E + + Sbjct: 443 PPDEHSEYVRRAQAIKSGGVRYEQRFVRRDGTR-TWGRVSATPIRTDVGEYAGAFVMIAD 501 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + ++ +R + + I+E ++GI I G I N+ + ++ GY V ++L KP Sbjct: 502 ITEAKMVERSLRESEARYRRIVETANEGIISIGPNGNIRFANKVLCRMLGYAVYELLGKP 561 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552 + L + +L + + K+ + + + Sbjct: 562 VSALLYPEDIPRLEEHLVRRRQG---LSDQFEQRYRCKDGSSVWALVSASPILGDDGRYQ 618 Query: 553 CYSLTMHDISEWKQEKNKLSHAKK 576 DIS K+ + +L +++ Sbjct: 619 GVLAMAADISGRKRAEAELVRSER 642 Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats. Identities = 54/545 (9%), Positives = 139/545 (25%), Gaps = 46/545 (8%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 + + + + + F P+P +D G + ++ +G Sbjct: 7 KSEAANHGRATDPAAHGPAGPYFDLVPLPCHC-----LDDQGRIVAVNRAWLALLGFSRE 61 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIYS 170 + G L D + + + +G + V + I Sbjct: 62 EATGRPLDDFLA-----GPPQVWAA-DGSSPESPVCLTMLGRDGCAVEVRAE-----IRR 110 Query: 171 RNREFSGF--------RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 + +GF +G D L + + ++ V Sbjct: 111 PDGAGAGFSLAHFLYPQGEADARTVAGDARIHRLVAENTEDVVWTVDNDLRYTYVSPSVG 170 Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 + R ++ + + + + + + + + Sbjct: 171 RLRGIVPEDVVGRCVDQFVTPQTLPLVLEALDGVRRAVARGERSPLARMELEVQHADGSA 230 Query: 283 YTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-S 337 + L +++ S + + E +D +Y + Sbjct: 231 VWVEAVARPLLDHAGACVGFIGSTRSIGDRREVEQRLRRNERALRALLDATVEDVGLYGT 290 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G + N + + GLS P+ + + ++ Sbjct: 291 DGTISIINGNMAARLDLDPEEA----AGLSLFDHLPQERVESWRESFRQVAQTGRPVSRK 346 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L ++ + Q E + + + + + + Sbjct: 347 GHLKGRHFD--------LTLYPVFGQDGEVDGVAIFAKDTTERTRAEEALRESEARYRRM 398 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 LE ++GI ++ +G I N+ + G+ EDI+ + + S I Sbjct: 399 LETANEGILSMDADGRIAFANQTMVDFMGHDFEDIIGATLPDLMPPDEHSEYVRRAQAIK 458 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575 S +R E+ + + + + + DI+E K + L ++ Sbjct: 459 SGGVR--YEQRFVRRDGTRTWGRVSATPIRTDVGEYAGAFVMIADITEAKMVERSLRESE 516 Query: 576 KIAEK 580 + Sbjct: 517 ARYRR 521 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 51/504 (10%), Positives = 129/504 (25%), Gaps = 33/504 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150 G + I+ + + + G+ L D ++ + + K Sbjct: 291 DGTISIINGNMAARLDLDPEEAAGLSLFDHLPQERVESWRESFRQVAQTGRPVSRK---- 346 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G DL P++ ++ E G F + + ++ + E Sbjct: 347 ---GHLKGRHFDLTLYPVFGQDGEVDGVAIFA--KDTTERTRAEEALRESEARYRRMLET 401 Query: 211 KKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 I + T D + Sbjct: 402 ANEGILSMDADGRIAFANQTMVDFMGHDFEDIIGATLPDLMPPDEHSEYVRRAQAIKSGG 461 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPE 324 + ++ F + + + ++ + E + E E Sbjct: 462 VRYEQRFVRRDGTRTWGRVSATPIRTDVGEYAGAFVMIADITEAKMVERSLRESEARYRR 521 Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V+ + +GN+ +AN + Y + + +S LL + ++ Sbjct: 522 IVETANEGIISIGPNGNIRFANKVLCRMLGYAVYELLGKP--VSALLYPEDIPR---LEE 576 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 ++ R + +S+ + + + Sbjct: 577 HLVRRRQGLSDQFE---QRYRCKDGSSVWALVSASPILGDDGRYQGVLAMAADISGRKRA 633 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502 + ++ ++ E + +G+ +G +S N A+ +L GY T Sbjct: 634 EAELVRSERNYRNLFENSVEGLYQSTPQGRFVSVNPALVRLTGYDSPQEFMDAITDITTQ 693 Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLT 557 P + + ++ + + L K L + I + + Sbjct: 694 FYYDPKDRDRLVQALIQHG--EVRQFEILIRRKGGGTLWVSINSRLSRGLGNEPELFEGS 751 Query: 558 MHDISEWKQEKNKLSHAKKIAEKE 581 + DI+ K+ + L + + Sbjct: 752 IIDITGRKRVEEALRLTQFSVDMA 775 >gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 939 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 105/570 (18%), Positives = 205/570 (35%), Gaps = 20/570 (3%) Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 E + +E + + + K E RN Sbjct: 227 TRRLRGLEESAGRLERGVALEEPSPARDEIGRLAGHFGNAARRIQKREAELQQARNEAEK 286 Query: 312 SAYFDE-GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 A E G ++ P + ++ A+ L + + ++I L + Sbjct: 287 RAAEAEEGRRTLEAIMEYLPEGLVIADAPDVHIRMASRYALEFSGGEQAKLLDIPEVLHS 346 Query: 369 LLDAPKLSDNNA---IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 +D + + L ++ R + ++ L M ++ Sbjct: 347 SRWKIFDADCQMPMDTRELPLTKAVREGRVVEGGSNCMEDKSGRRLPMHVNAGPIRDRQG 406 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + D R + + QL +E IA+ + + + ++ F Sbjct: 407 NVIGGIVVFRDISDIRQAEEALRRSEGQLRLFVENAPVAIAMFDTQMRYIEASQRWLNNF 466 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 + + + P L+ + + + Sbjct: 467 NLVRQGLRGRSHYETF-PELPEHWKQVHRRSLAGAVEGADADRFERADGSVQWTRWETRP 525 Query: 546 KKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + D++E Q + L AK+ A+ + KS+FLA +SHEIRTP+ I Sbjct: 526 WYTAPGVIGGIIIFSEDVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGI 585 Query: 604 IGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 +G E + P +S + +LDI+ND+LD+SKIE+GK+ L P+ Sbjct: 586 MGMIELALLKDPSCPA-----RGNLELAQKSAHHLLDIINDILDLSKIEAGKLELKSRPL 640 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L V + + + L A+ K + + +++P ++ D ++Q+ +N++ NA+ FT Sbjct: 641 VLRRIVEDVVGTLSLAASRKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHE 700 Query: 722 GGQ-IIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G + + T ++ + V DTG+G+ L + F Q Q + GTGLG Sbjct: 701 GRILVNVETVLRTDGGRICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLG 760 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 L ++K +V+ G+ + STP G+ Sbjct: 761 LTISKLLVELMGGEVSVRSTPGHGSSFTFT 790 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 13/183 (7%), Positives = 39/183 (21%), Gaps = 5/183 (2%) Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + + +P+ + A PI R G G + +R + + E Sbjct: 386 DKSGRRLPMHVNAGPIRDRQGNVIG--GIVVFRDISDIRQAEEALRRSEGQLRLFVENAP 443 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK---YPLLTSEESSL 269 ++ + + + + L + + Sbjct: 444 VAIAMFDTQMRYIEASQRWLNNFNLVRQGLRGRSHYETFPELPEHWKQVHRRSLAGAVEG 503 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F + + + + + + E + D Sbjct: 504 ADADRFERADGSVQWTRWETRPWYTAPGVIGGIIIFSEDVTEAVQIREALRQAKQEADAA 563 Query: 330 PIP 332 Sbjct: 564 NKA 566 >gi|303247150|ref|ZP_07333425.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491576|gb|EFL51461.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 801 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 112/695 (16%), Positives = 227/695 (32%), Gaps = 64/695 (9%) Query: 182 GIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + R A R D+ + + + Sbjct: 79 ALCRDIIRETPLGSANCARSDRSLGEACPQGPAVAKCLSGGLLDGATPIFFGKRHIATWF 138 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + E++ E ++ ++ K + Sbjct: 139 IGQVADESFDAAAGMAYAREIGADEDAFRRALEKVPRMSRERFGKVCTALYCFAEHLSAM 198 Query: 301 EYLSHRNH------PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353 +H+ A + + +D P P V + G++ + N + LT Sbjct: 199 ALRNHQQSLLIDDLRQAQAELKTRDRNLADLIDFLPDPTMVVNAQGSVVFWNKAMEKLTG 258 Query: 354 YKSVDDI--------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 +VD + E G T L +D+ + A + Sbjct: 259 IAAVDMLGKSRFEYGEPFYGAPTPLLIDYARGAVGQPDARYVVADKNVDSIIAEVSVATL 318 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 R + + + + D + + + I+E ++G+ Sbjct: 319 PRGPRH-IWAKAVALRDDTGRITGGIEVIRDITDNQRADLALRESEEKFRRIVETANEGV 377 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +++ NR ++ + G E++ FL + + + +L ++ Sbjct: 378 WVLDAADKTAFVNRRMAAMLGCSAEEMPGSLVEPFLTEKSLPTVRAHLDKLR-QGQTTVF 436 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE---- 579 E T + + DI+ K+ + +L+ + E Sbjct: 437 EHELRAVTGAVLWVMVSASPLYDGSGRYIGALGMFTDITARKKIEEELAESSHRLEAEVE 496 Query: 580 ---------------------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RF 615 + KS FL+ VSHE+RTPLT+I+GF+++I +F Sbjct: 497 ERTRDLRLQALELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFNDQF 556 Query: 616 GPLGN---------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 PL R + + ++ND+LD+++IESG M+ + E Sbjct: 557 LPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLDLNRIESGNMHWRDTRFNPLE 616 Query: 667 AVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +A + ++ +++ I ++P + D + Q+ N+L NA+ FT G Sbjct: 617 VLGKAANSIKGLLSQRPEITFVLEMNEDVPEVRMDPDQLIQVVTNLLQNAVKFTREG--- 673 Query: 726 IIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGEGTGLGLPLAK 782 + T E V L + D+G+G+ ELE F Q+ S +GTGLGL + + Sbjct: 674 TVRMTVRREGEAVELAIADSGIGIPPGELEAIFGKFHQVGRSDTMGETTKGTGLGLAICR 733 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +V G+ + S +G++ ++ P D + Sbjct: 734 QIVRHYGGRIWAESQLGQGSVFYVLLPGCDAAQAE 768 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 25/256 (9%), Positives = 67/256 (26%), Gaps = 18/256 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 ++A G + ++ + K G A M+G + + + P I + Sbjct: 240 VNAQGSVVFWNKAMEKLTGIAAVDMLGKSRFEYGEPFYGAPTPLLIDYARGAVGQPDARY 299 Query: 148 TLWPIEGTNLYVPIDLAALP------------IYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + ++ + +A LP + +G G ++ + Sbjct: 300 VVADKNVDSIIAEVSVATLPRGPRHIWAKAVALRDDTGRITG--GIEVIRDITDNQRADL 357 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDD 252 + ++KF + E V + + SL E + + Sbjct: 358 ALRESEEKFRRIVETANEGVWVLDAADKTAFVNRRMAAMLGCSAEEMPGSLVEPFLTEKS 417 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + + + + + + L + S L + Sbjct: 418 LPTVRAHLDKLRQGQTTVFEHELRAVTGAVLWVMVSASPLYDGSGRYIGALGMFTDITAR 477 Query: 313 AYFDEGENLTPETVDK 328 +E + ++ Sbjct: 478 KKIEEELAESSHRLEA 493 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 61/225 (27%), Gaps = 7/225 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W +DA ++ + +G A +M G + + D L++ T Sbjct: 377 VWVLDAADKTAFVNRRMAAMLGCSAEEMPGSLVEPFLTEKSLPTVRAHLDKLRQGQTTVF 436 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L + G + + ++A P+Y + + G G + + Sbjct: 437 EHELRAVTG--AVLWVMVSASPLYDGSGRYIGALG--MFTDITARKKIEEELAESSHRLE 492 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--LT 263 E + ++ + + + R+K+ S + L Sbjct: 493 AEVEERTRDLRLQALELAEANIRLSE-LDRLKSAFLSTVSHELRTPLTSILGFAKLIGRD 551 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + LP + + ++ ++ Sbjct: 552 FNDQFLPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLD 596 >gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 798 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 98/510 (19%), Positives = 193/510 (37%), Gaps = 19/510 (3%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D P ++ GNL + N + T + A L P Sbjct: 19 PTMADFRNLADALPQLAWIAEADGNLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 75 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + A + + + ++ + N + G Sbjct: 76 LERAAARFAACIAAGESWQD----TFPLRGKDGRYRWFLSLAEPVRNADGVIVRWYGTNT 131 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +TR+ + + + ++++A++ I +G ++ + G E Sbjct: 132 DVTETRLAQDALGHSEQRFRALVDASAAVIWNTTAQGELMPPQPRWAAYTGQGEEAYQGW 191 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + + + E + + E + + + + Sbjct: 192 GWVDAVHPDDRARAAEVWAECVE--AVKVYEVEYRLRRYDGVWRDMEVRGVPVLAEDGTI 249 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+ K+ + + A+ AE + KS FLA +SHE+RTPL+A+IG+SE + Sbjct: 250 REWVGLNIDITARKEAEAAIEQARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 308 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + LG + I+ + +L ++ND+LDISKIE+G++ L E + + + Sbjct: 309 GEELEDLGQAELLPDLRKIESAARHLLGLINDVLDISKIEAGRLTLAAESFDVASLIEDV 368 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + Q +KR R ++ + D ++Q +N++ NA F+ G +I++S Sbjct: 369 SAATQSLITKKRNRFRLDLEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIVLSVRR 427 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E + V DTG+G+T ++ + + F Q S + GTGLGL + +A ++ Sbjct: 428 VREEDGEWLSFAVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFIERM 487 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G + ST G I P +H + Sbjct: 488 GGTIGVESTFGAGATFTIRLPATLAAHEEE 517 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 24/263 (9%), Positives = 57/263 (21%), Gaps = 15/263 (5%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + T F + W +A G L + G +M Sbjct: 11 DGKVPATGPTM-----ADFRNLADALP-QLAWIAEADGNLVWYNRRWYDYTGTTPAEMAD 64 Query: 116 MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 + H++ + +W L +G Y A P+ + + Sbjct: 65 HGWRKLHHPDHLERAAARFAACIAAGESWQDTFPLRGKDGR--YRWFLSLAEPVRNADGV 122 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230 R +G + +++F L + + ++ Q Sbjct: 123 IV--RWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWNTTAQGELMPPQPRWAAY 180 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + + D E + + + + Sbjct: 181 TGQGEEAYQGWGWVDAVHPDDRARAAEVWAECVEAVKVYEVEYRLRRYDGVWRDMEVRGV 240 Query: 291 TLQNNSKESFEYLSHRNHPSLSA 313 + E++ + Sbjct: 241 PVLAEDGTIREWVGLNIDITARK 263 >gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1] Length = 1444 Score = 351 bits (900), Expect = 4e-94, Method: Composition-based stats. Identities = 117/598 (19%), Positives = 218/598 (36%), Gaps = 29/598 (4%) Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 + L + + ++ E+ A + + + S L E T Sbjct: 349 AATLVTLPIARRFAAPLEHLAEESTRIGRLDLQRPVAVASDLAEISALATAQEAMRQALL 408 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSA---YFDEGENLTPETVDKCPIPFFVYS--HGN-- 340 + + + E L + L E D P F + G Sbjct: 409 ASTSRLEEANATLEARVSERTWELEQSKGAAEWSRQLLREMADSLPCATFRFEVVPGRSP 468 Query: 341 -LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + + + + + + G L L + + R T + Sbjct: 469 AFRFVSAQVARILGVTAAELMNDPGLRLKNLHPDDLEPARIAQAEAIDRGQPTNLLYRVV 528 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L + + F NG + + ++ + +L ++ + Sbjct: 529 L------GNTAPRWIETRSMVSESFDGTRVWNGYWLDVTEREEALARIRMAEERLRALTD 582 Query: 460 ATSDGIAIINREG---IILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLT 514 + + + +G +R V ++ G +++ + + + Sbjct: 583 SVPVAVFEMRSQGDLFWFTFISRKVREILGIGRDELRANAGRLYGTVAAADRDGLEESVV 642 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSH 573 + L + +E+ + + + DI+ KQ + +L+ Sbjct: 643 AAIGGGLHFSASFRLDSP-GDERWIRMEAVPIPGEQGDRVWAGFFQDITAVKQAEAELTR 701 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK++AE + KSDFLA +SHEIRTP+ AIIG S + P R +Y I + Sbjct: 702 AKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLKTPLTP----RQHDYVKKIQGA 757 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L I+ND+LD SKIE+GK+ + LD+ + SL+ N K + + ++ Sbjct: 758 GQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIASLLTEKTNAKNLELVFDVPSD 817 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMT 749 +PR ++ D + QI +N +NA+ FT G II+ + EV+ VRDTG+G+T Sbjct: 818 VPRALVGDSLRLGQILINYANNAVKFTEKGEIDIIVRVQERTQTEVVLYFAVRDTGIGIT 877 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + + F Q S + GTGLGL ++K + + G + S KG+ Sbjct: 878 PEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMDGAVGVESEYGKGSTFWFT 935 Score = 45.8 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 26/270 (9%), Positives = 71/270 (26%), Gaps = 34/270 (12%) Query: 73 TFVFD--PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHI 127 TF F+ P + +S ++ + +G A +++ G+RL ++ + Sbjct: 457 TFRFEVVPGRSPA-----------FRFVSAQVARILGVTAAELMNDPGLRLKNL-HPDDL 504 Query: 128 DPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVH 185 +P + + R + G I+ ++ + F G R + G Sbjct: 505 EPARIAQAEAIDRGQPTN--LLYRVVLGNTAPRWIETRSM----VSESFDGTRVWNGYWL 558 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + A + +++ L + + + D+F +R + Sbjct: 559 DVTEREEALARIRMAEERLRALTDSVPVAVFEMRSQGDLFWFTFISRKVREILGIGRDEL 618 Query: 246 YY--------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 D E+ + ++ + + Sbjct: 619 RANAGRLYGTVAAADRDGLEESVVAAIGGGLHFSASFRLDSPGDERWIRMEAVPIPGEQG 678 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + + E + Sbjct: 679 DR-VWAGFFQDITAVKQAEAELTRAKELAE 707 >gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681] gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681] Length = 609 Score = 351 bits (900), Expect = 4e-94, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 25/374 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L SIL SDG+ + G ++ NR S + G ++ + V Sbjct: 251 REALSQNEEEKEKLSSILTNMSDGVVATDDNGRVILVNRRASAMLGVNENEMTGRHIAVL 310 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558 L + + S TL ++ E ++ + + Sbjct: 311 LGIDPEET-----EALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTIAVL 365 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ + + +F+A VSHE+RTPLT I ++E + G + Sbjct: 366 QDVTEQEEMETT--------------RREFVANVSHELRTPLTTIRSYAEAL---DDGAM 408 Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ E + I ++ +V DLL +S+++S + L +P + E + E Sbjct: 409 AEPQVAERFVGVIRNETERMIRLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSF 468 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +K I I +++ D ++Q+ N++SNA+ +TP GG I I S + Sbjct: 469 QMKQKHIRSGMFVEQGIGKVVIDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGML 528 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G+ ++ S Sbjct: 529 SISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESE 588 Query: 798 PAKGTLIEIIFPLY 811 +GT P+ Sbjct: 589 YGQGTCTTFTLPMS 602 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 34/308 (11%), Positives = 80/308 (25%), Gaps = 35/308 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D +G + ++ +G +M G ++ +L IDP + L ++ Sbjct: 278 TDDNGRVILVNRRASAMLGVNENEMTGRH---IAVLLGIDPEE--TEALYSGSSASTL-L 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + + I + PI+ R +G ++ + + SH Sbjct: 332 QLEPAGQDEPIVIRVTFTPIHRREFGITGT--IAVLQDVTEQEEMETTRREFVANVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E D + P A + + + + + Sbjct: 390 RTPLTTIRSYAEALDDGAMAEP---------------QVAERFVGVIRNETERMIRLVTD 434 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-------ENL 321 L + + + + + F + + H + ++G + Sbjct: 435 LLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVVIDRDQ 494 Query: 322 TPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLS 376 + +D Y G++ SV D L + + Sbjct: 495 IEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDRIFERFYRV 554 Query: 377 DNNAIKPV 384 D + + Sbjct: 555 DKARSRNM 562 >gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica WH47] Length = 953 Score = 351 bits (900), Expect = 4e-94, Method: Composition-based stats. Identities = 125/728 (17%), Positives = 254/728 (34%), Gaps = 57/728 (7%) Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 +V ++ + + LLKR + T + A + R R+F Sbjct: 96 WSEVPILVLLQAGDPDSKLLKRVLSLEHVTL-IHRPLRIAVFINTVRAK-LRDRMRQFE- 152 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PPPH 233 V ++ D R + + + G ++ E K ++ ++ Sbjct: 153 ------VRDLLLEKDRAQTSLRREARRLDMAIQAGGMAAWEWSKTHVYWSEAFRRLHGFG 206 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 ++ S++ + + + + + + L + ++ Sbjct: 207 KNVQPSESAMFGSIVESEREQIANHWSDAIEQNAPFRSEFRINHPKLGERWLVAVGEPVK 266 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFL 349 S ++ Y + + + + ET + P +V + Sbjct: 267 GKSGKTLRYTGLQWDITERKTAEMELRQSHETFQRLITDNPQGLYVVDADFRMRYVSAGA 326 Query: 350 LLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 I + T+ + + L + + Sbjct: 327 RNVFINVNPLIGRPFEDVMRTIWPNEFAEEAIRVFRHTLETGEPYVAPPLVEQRVDTSDI 386 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E N+ + +++ + I +A+ + + Sbjct: 387 EAYDWSIERIVLPDNRQGVVCHFY----NNTQRQLSVDLLRESERYFREIADASPAMLWV 442 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + + ++ G E+ + +T + + + + + RQ Sbjct: 443 TDENHMCTFLSKNWYDTTGQTQEEGMGLGWTNATHPDDHARAGEEF--LTAANARQPFLS 500 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + S + + D+ + K + L AK IAE + Sbjct: 501 EYRLRMADGSYRWAVDVGRPRFDSDGVFVGYTGYVIDVDDRKAFEQSLEQAKVIAENANR 560 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 + +FLA +SHEIRTP+ AI+G ++++K+ L +P I+ I R+GN +L+I+ND Sbjct: 561 SRGEFLANMSHEIRTPMAAILGHADILKDH----LKDPDNIQVVETIRRNGNFLLNIIND 616 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD+SKI+SGKM L + V D ++E SL+ + A+EK + ++ F IP I D Sbjct: 617 ILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRASEKHLPLKIEFDGPIPDLIETDAV 676 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------------------EVILR 740 ++QI LN++ NAI FT SG ++ I + +I + Sbjct: 677 RLRQILLNLVGNAIKFTDSG-EVKILVGYDGPGKRPAEIDQSDPSKLQSPVAGTCRLIFQ 735 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG+G+ + +PF Q ++ GTGLGL + + + A G + ST K Sbjct: 736 IVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLGLAICRRLAHALGGDVSVESTYGK 795 Query: 801 GTLIEIIF 808 G+ + Sbjct: 796 GSKFTLTI 803 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 44/161 (27%), Gaps = 6/161 (3%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-I 127 +SE F W D + +S+ T G + +G+ + + Sbjct: 424 ESERYFREIADASPA-MLWVTDENHMCTFLSKNWYDTTGQTQEEGMGLGWTNATHPDDHA 482 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + + + L +G+ +D+ P + + F G+ G+ I Sbjct: 483 RAGEEFLTAANARQPFLSEYRLRMADGS-YRWAVDV-GRPRFDSDGVFVGYTGYVI--DV 538 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 ++ + + + + + Sbjct: 539 DDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAA 579 >gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 587 Score = 351 bits (900), Expect = 4e-94, Method: Composition-based stats. Identities = 116/408 (28%), Positives = 193/408 (47%), Gaps = 24/408 (5%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 D R + +E + + SD I+ R G ++ + AV L G Sbjct: 158 AAVLAFAADTLARTGVTLLSMEEERYRLLARNMSDVISRHRRNGAVMFISPAVENLLGTS 217 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK--------LLS 540 V + + L+E ++E + + Sbjct: 218 VAQLQGHGLFERVHVADRPAYLTALSEAARGSEASSVEFRLRRDAGGDTRGPHHAVDFIW 277 Query: 541 LRIIIKKLPFSSC--------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + L ++ M D+++ K ++ L A+ AE+ + K+ FLA + Sbjct: 278 VEMRCRPLDAAARTPSGAEQEVVAVMRDVTDRKLQEQALELARSAAERADAAKTRFLATM 337 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL AIIGFSE++ ++ L R EYA I+ SG +L +VN +LD+SK+ES Sbjct: 338 SHELRTPLNAIIGFSEMLMQEQALVLNAARRREYAQLINDSGQHLLSVVNGILDMSKMES 397 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G L EP + A+ +L+ L A E + + +++P I D R+ KQI +N++ Sbjct: 398 GNFELTPEPFAPRAALINCCNLLALRARENGVDLSADVPHDLPTITGDPRAFKQIVINLV 457 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI FT GG++++S +++LR+ DTGVG+ +L++ PF Q + Q R E Sbjct: 458 SNAIKFTERGGRVMVSAAIE-GPQLLLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHE 516 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 GTGLGL + K++V+ + G+ I S +GT + I P+ DC+ Sbjct: 517 GTGLGLSIVKSLVNLHGGEMSIESKLDEGTTVSIALPI-------DCV 557 Score = 44.2 bits (103), Expect = 0.089, Method: Composition-based stats. Identities = 13/146 (8%), Positives = 37/146 (25%), Gaps = 11/146 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTL 149 +G + IS + +G ++ G L + + + + + + L Sbjct: 199 RNGAVMFISPAVENLLGTSVAQLQGHGLFERVHVADRPAYLTALSEAARGSEASSVEFRL 258 Query: 150 WPIEGTNLY--------VPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKR 199 G + + +++ P+ + R SG ++ + Sbjct: 259 RRDAGGDTRGPHHAVDFIWVEMRCRPLDAAARTPSGAEQEVVAVMRDVTDRKLQEQALEL 318 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIF 225 K + + Sbjct: 319 ARSAAERADAAKTRFLATMSHELRTP 344 >gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1097 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 97/600 (16%), Positives = 214/600 (35%), Gaps = 31/600 (5%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 R ++ + ++ D S+ S + + + + + Sbjct: 226 RNPTQLETFFDHLHDDDRSSIEAAIKKTVSDGSPYDARYRIFLDSGELRHIAAHGQLVYD 285 Query: 295 NSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349 ++ E + + + E T ++ + V G+ N Sbjct: 286 DNNEPERLIGVCVDRTREQQHEDALAASEERYRATFEQAAMGIAHVGPDGSWLRVNQGLC 345 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + Y + + + ++ D+ A ++ S + Sbjct: 346 DIVGYTAEELMALS------FQDITHPDDLTADLELVQQILAGELKRYSLEKRYVHKAGH 399 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + + + + + + + Q + + GI Sbjct: 400 T-VWINLTVSLIQHADGSPNYFISVVEDIQERKQAELALRRMTHQFEQLFSSELLGIMTC 458 Query: 469 NREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +G + N + +L + + + + + + + + E Sbjct: 459 RLDGAVEQMNTELRRLLSLSESVPLTNVNWRKLIAPDCLAHDETVIEQTRETGTARPWET 518 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKS 586 L + + + + + + +S + D + KQ + L AK AEK S+ KS Sbjct: 519 EFL--RADGTRIPVVMGLTAIDPASSLCIGFVLDATRQKQTEANLLAAKLTAEKASAAKS 576 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHE+RTPL +IG ++++ N + ++A SG +L +++D+LD Sbjct: 577 EFLATMSHELRTPLNGVIGMTQLLMNTEL----DSDQHQFARACHSSGKTLLALISDILD 632 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSFANNIPRILADLRSV 704 +SK+E+G++ L +P L ++E + + + F + + D + Sbjct: 633 LSKVEAGRLELEQQPFRLGNLITEVEDSTRPALEADGLTFQNTRQFPEGL-VLRGDRVRL 691 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++ +N+L NA FTP G I + T ++ + DTG+G+ + + F Sbjct: 692 LRVLMNLLGNAGKFTPEGS-ISLVTRMEQPSEDTADLHFSITDTGIGIEGSKQGRLFDAF 750 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818 Q+ +S R G+GLGL + K +V+A G+ + S G+ I P+ + D Sbjct: 751 TQLDSSTTRRYGGSGLGLAICKHLVEAMEGEIGVESELGHGSTFWFRISLPIVPEAELAD 810 Score = 74.7 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 22/248 (8%), Positives = 71/248 (28%), Gaps = 21/248 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146 + G +++ L +G A +++ + D++ + + + + + + Sbjct: 331 VGPDGSWLRVNQGLCDIVGYTAEELMALSFQDITHPDDLTADLELVQQILAGELKRYSLE 390 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G +++ + ++ + + + +V + +R+ +F Sbjct: 391 KRYVHKAGHTVWINLTVSLIQHADGSPNY----FISVVEDIQERKQAELALRRMTHQFEQ 446 Query: 207 LH----------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 L + + E + S P + + + AH + V+ Sbjct: 447 LFSSELLGIMTCRLDGAVEQMNTELRRLLSLSESVPLTNVNWRKLIAPDCLAHDETVI-- 504 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ++ P + +F + + + S ++ + Sbjct: 505 ---EQTRETGTARPWETEFLRADGTRIPVVMGLTAIDPASSLCIGFVLDATRQKQTEANL 561 Query: 317 EGENLTPE 324 LT E Sbjct: 562 LAAKLTAE 569 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 22/199 (11%), Positives = 61/199 (30%), Gaps = 10/199 (5%) Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT---RINKRKMEIEVMQLCSILE 459 I W LA A + P+ ++ + +++ V +L Sbjct: 135 IFWWPAYRLAGLLKAITAAVSLATAIVLVRFMPKILEAPSNAVLAEELKETVQRLNCAAA 194 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEIL 517 A G+ + + L + ++++F E + F L + S + + + + Sbjct: 195 AAQMGVWEWSIQDNCLRWDEQLAQMFDLQPERNPTQLETFFDHLHDDDRSSIEAAIKKTV 254 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575 S + E + ++ + + D + +Q ++ L+ ++ Sbjct: 255 SDGSPYDARYRIFLDSGELRHIAAHGQLVYDDNNEPERLIGVCVDRTREQQHEDALAASE 314 Query: 576 KIAEKESSHKSDFLARVSH 594 + ++H Sbjct: 315 ERYRATFE---QAAMGIAH 330 >gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter alkaliphilus AHT 1] Length = 587 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 92/369 (24%), Positives = 170/369 (46%), Gaps = 25/369 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E +L +I+ + ++G+ I+ +G ++ N L D+ K + Sbjct: 240 QQTVEDLSHEKSKLENIMLSMNEGVMAIDGQGKVILANPQARSLLKLSETDLTGKEISSL 299 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMH 559 L MN ++++ + E G K+LSL+I + + + Sbjct: 300 LP---QEEMNQLFMDVIASSEVHSAEYQVFG----GKVLSLQIAPLYRNNQTWGAVGILQ 352 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + + DF+A VSHE+RTP+T+I GF E + + Sbjct: 353 DVTEVRHLE--------------QMRRDFVANVSHELRTPMTSIQGFVEALLDGL--AED 396 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y N I + +V+DLLD+S++E G++ E + L ++ S +Q Sbjct: 397 KESQDRYLNVILDETVRLNRLVSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQV 456 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++ + + NI + + ++Q+ +N+L NAI FTP GG+I +S ++V + Sbjct: 457 AKQELSVDIDTPENISAVTGNRDRIQQVLINLLGNAISFTPPGGKITLS-AKDVGDKVEV 515 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 +V DTG+G+ E +K + F ++ ++ GTGLGL + K +VDA+ G + STP Sbjct: 516 QVTDTGMGIPPEEQDKIWERFHKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPG 575 Query: 800 KGTLIEIIF 808 KG+ Sbjct: 576 KGSTFYFTL 584 >gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 756 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 91/409 (22%), Positives = 185/409 (45%), Gaps = 15/409 (3%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAI 467 + + ++ N+ ++ + ++ + + E +L I E +DG+ + Sbjct: 199 TQIWFVVMVQKRHRNSRRNLRSQALQRQALEDAYMRLFDQKQEARRLAMIAEHANDGVML 258 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526 I R+GI+ N S+L GY ++++ + L +NT + Sbjct: 259 IGRDGIVRWANDGFSRLTGYTFDELVGQNPGKILNSENTDPAALRVIEAGREKGEP--FR 316 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + K+ K + + + + Y D++ K+ + +L A+ AE+ + Sbjct: 317 AELINRRKDGKEIWIETNQVPVFDDTGQIETYIAVERDVTATKEYERQLKEARLAAEEGA 376 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +FLA +SHE RTP+ +IG +++++ + Y + I S +L ++N Sbjct: 377 RIKEEFLATMSHEFRTPMNGVIGMAQMLQATDL----SEDQRLYTDTILGSSRALLALIN 432 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD+S + + ++L L V + + L+ A+EK + + ++P + D Sbjct: 433 DVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELSVEIDPDVPVWVTGDD 492 Query: 702 RSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKP 759 R ++QI +N+L NA+ FT SG I + T ++ + + V DTG+G+ +LEK + Sbjct: 493 RRLRQILVNLLGNAVKFTTSGSIFIRLRGVVTGDQVALKIEVEDTGIGIPADKLEKIFER 552 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q N+ + G+GLGL +++ + A G + S +G ++ Sbjct: 553 FSQADNAISRKYGGSGLGLSISRGLAQAMGGDIDVTSVEGEGACFTLML 601 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 22/248 (8%), Positives = 63/248 (25%), Gaps = 11/248 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 I G ++ ++ + G +++G + + + DP I ++ + + Sbjct: 259 IGRDGIVRWANDGFSRLTGYTFDELVGQNPGKILNSENTDPAALRVIEAGREKGEPFRAE 318 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + I+ +P++ + + + + K Sbjct: 319 LINRRKDG--KEIWIETNQVPVFDDTGQIETY--IAVERDVTATKEYERQLKEARLAAEE 374 Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 IK+ + ++ + + T+ L + Sbjct: 375 GARIKEEFLATMSHEFRTPMNGVIGMAQMLQATDLSEDQRLYTDTILGSSRALLALINDV 434 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + F+ L + E LS P + + + Sbjct: 435 LDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELSVEIDPDVPVWVTGDDRR 494 Query: 322 TPETVDKC 329 + + Sbjct: 495 LRQILVNL 502 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 31/286 (10%), Positives = 78/286 (27%), Gaps = 19/286 (6%) Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 GF V ++ L + L + + Sbjct: 105 AGSVCGFAAIPYVQMHTEAGAHEILAEPFFALCIVLGPALSAALDL-----RYVPLAASV 159 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 L + LT + ++ + ++ + Q F + ++ + Sbjct: 160 RLLMLSLLPFGLTAHILLQNQTHGADLQLMVAGLVAFFFTQIWFVVMVQKRHRNSRRNLR 219 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350 Q +++ E R + + + G + +AN F Sbjct: 220 SQALQRQALEDAYMR-----LFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWANDGFSR 274 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 LT Y + + G + + +D A++ + R A L + + + Sbjct: 275 LTGYTFDELVGQNPGK---ILNSENTDPAALRVIEAGREKGE--PFRAELINRRKDGKEI 329 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 T + + +E + T+ +R+++ +L + Sbjct: 330 WIETNQ-VPVFDDTGQIETYIAVERDVTATKEYERQLK--EARLAA 372 >gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum ATCC 27405] gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium thermocellum DSM 2360] gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum JW20] gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium thermocellum DSM 1313] Length = 600 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 169/374 (45%), Gaps = 24/374 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + R ++ E ++ +IL +DG+ N G ++ N + G D F Sbjct: 249 RELRKTLNQISREKSKIETILNYMTDGVIAFNINGEVIHINPVAKAILGIEKCDFDFNEF 308 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + + YL + ++ + + + + + + + Sbjct: 309 SKRYNLDVSIEEVKYLEIYNAKEVSTNIGEKYVK-------IYFALFTDEENNADGVIAV 361 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HDI+E ++ + + + +F+A VSHE+RTPLT+I ++E + + Sbjct: 362 LHDITEQQKLE--------------NMRKEFVANVSHELRTPLTSIKSYAETLLDGAL-- 405 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 ++ + I+ + + +V DLL +S++++ +M + +S ++ V + V+ Sbjct: 406 EDRELAGKFLSVINSEADRMTRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKF 465 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + EK + I+AD ++Q+ LNIL+NAI +TP GG+I + EV Sbjct: 466 ESEEKNQTLECFTIGEELEIVADKDRMEQVVLNILTNAIKYTPEGGKITVYIG-RMYSEV 524 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++V D+G+G+ +L + + F + ++ GTGLGL +AK +V+A+ G + S Sbjct: 525 YVKVVDSGIGIPREDLGRIFERFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVASE 584 Query: 798 PAKGTLIEIIFPLY 811 P KGT + + P Sbjct: 585 PGKGTEVTVKLPAA 598 >gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata D2] gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata D2] Length = 1106 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 98/515 (19%), Positives = 209/515 (40%), Gaps = 23/515 (4%) Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 S E+ ++ + + GN+ N + + +++ + I + ++ Sbjct: 266 SLLAKSNEDRLHAMMNTAIDGIITIDAKGNVVSVNQAVETILGWQACELIGSN--VKKIM 323 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + +++ L I + + + + + Sbjct: 324 PSAIADEHDNFLTRYLNTRQAKIIGIGREVTAVHKQG---HLVPVHLGIGHVKQGKEHFF 380 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFGY 487 G + + ++ + + S++ GIA N G ++ + AV + GY Sbjct: 381 VGFISDLTKRNTMELALKRKESKFRSLISNIP-GIAYRCKNEPGWPMVYISNAVQTITGY 439 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + F ++ S T ++ ++ L Sbjct: 440 APSEFELPNPQRFFSDLYHPDDIAFIE---SQAKPPTFALEYRIIRRDGQIRWLFEHGNY 496 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + ++ + DI+E K+ + L AK+ AE+ ++ ++ FLA +SHEIRTP+ AI Sbjct: 497 IQDNNSGETWLDGFIMDITERKEMEQDLLLAKEHAEQAAAARAAFLANMSHEIRTPMNAI 556 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFS+++ + + +++ + I RS +L ++ND+LD +K++ GK+ L S Sbjct: 557 IGFSDILLDTAL----DKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGKLELENRVFS 612 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 L + + +S + L A ++ + + + + L ++QI N++ NA+ FT G Sbjct: 613 LTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILTNLIGNAVKFTAQG 672 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ + ++ + V + DTG+GM+ +LE F Q S + GTGLG ++K Sbjct: 673 -KVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSRKYGGTGLGTTISK 731 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +V+ G+ + S KG++ P+ + P Sbjct: 732 QLVELMGGEIEVESELGKGSIFRFTLPMQISQQPE 766 Score = 42.3 bits (98), Expect = 0.37, Method: Composition-based stats. Identities = 47/400 (11%), Positives = 109/400 (27%), Gaps = 55/400 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144 IDA G + +++ + +G A ++IG + + D +++ + L + Sbjct: 290 IDAKGNVVSVNQAVETILGWQACELIGSNVKKIMPSAIADEHDNFLTRYLNTRQAKIIGI 349 Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + T +G VP+ L + F GF + N KR + Sbjct: 350 GREVTAVHKQGHL--VPVHLGIGHVKQGKEHFFVGF-----ISDLTKRNTMELALKRKES 402 Query: 203 KFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYY-----AHKDDV 253 KF L + + + + + + ++ H DD+ Sbjct: 403 KFRSLISNIPGIAYRCKNEPGWPMVYISNAVQTITGYAPSEFELPNPQRFFSDLYHPDDI 462 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 E + + + + ++ +Q+N+ + Sbjct: 463 AFIESQA----KPPTFALEYRIIRRDGQIRWLFEHGNYIQDNNSGETWLDGFIMDITERK 518 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ + + + F AN S + T + G S +L Sbjct: 519 EMEQ------DLLLAKEHAEQAAAARAAFLANMSHEIRTPMNA------IIGFSDILLDT 566 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 L + RS ++ + + + L + F ++ + Sbjct: 567 ALDKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGKLELENRVFSLTDEIDTVVSTLW- 625 Query: 434 EPEDVDTRINKRKMEI------------EVMQLCSILEAT 461 + + +E +L IL Sbjct: 626 ----LQAKQQNLALEADISPKMASHYLGSPERLRQILTNL 661 >gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 949 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 92/410 (22%), Positives = 156/410 (38%), Gaps = 33/410 (8%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + D + K+ + +++E I + ++ N + LF Sbjct: 117 AIINALEKARLTRDNKEFAEKIRESEERYRALIENAGSAILFFDANDNVILANEVAASLF 176 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G + + F+ + IL + E +++ S I Sbjct: 177 GMEKDKVEGMGIRDFMPSEDAARFTKRFHAILEKGVGGIYEDWVTLPGGQKRCFSSNIHP 236 Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI---------------------AEKES 582 + + DI+ K+ + L AK+ A+ + Sbjct: 237 ISRSDGHIMGFQCILLDITRQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLAN 296 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTP+ ++G ++ EYA + S + +L+I+N Sbjct: 297 MAKSEFLANMSHEIRTPMNGVVGMISLLLETELTR----EQKEYAETVRNSAHSLLEIIN 352 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701 D+LD SKIE+GK++L L + EA +V L A EK + ++P R+ D Sbjct: 353 DILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDP 412 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAM 757 ++QI LN+ +NA+ FT G I I + V DTG+G+ + Sbjct: 413 VRLRQIVLNLANNAVKFTAQGS-ITIRVELLKQAPDLLALKFSVTDTGIGVAPSRQQSLF 471 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 F Q S GTGLGL ++K + G+ + S KG+ Sbjct: 472 DAFTQAEASTTRNYGGTGLGLAISKKLAQMMKGRIGLESEEGKGSTFWFT 521 Score = 44.6 bits (104), Expect = 0.064, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 66/245 (26%), Gaps = 29/245 (11%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+ + +E G K+ GM + D + T L Sbjct: 160 DANDNVILANEVAASLFGMEKDKVEGMGIRDFMPSED-----------AARFTKRFHAIL 208 Query: 150 WPIEGTNLYVPIDLAA----------LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 G + L PI + GF+ I+ + +R Sbjct: 209 EKGVGGIYEDWVTLPGGQKRCFSSNIHPISRSDGHIMGFQ--CILLDITRQKEVEQALRR 266 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + + ++ + K++ + + Sbjct: 267 AKE---ETEDANRQLEMIIEDSNRLA--VQADLANMAKSEFLANMSHEIRTPMNGVVGMI 321 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYFDEG 318 LL E + ++E T+ + ++ + + + + E+ + L +E Sbjct: 322 SLLLETELTREQKEYAETVRNSAHSLLEIINDILDFSKIEAGKLDLEAIDFDLRNTLEEA 381 Query: 319 ENLTP 323 ++ Sbjct: 382 SDIVA 386 >gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis NIES-39] Length = 655 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 96/655 (14%), Positives = 214/655 (32%), Gaps = 55/655 (8%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + L + + L NK+ Sbjct: 25 QEIADRLRVEEALRASSELLQTLINAIPDLVCFKDSQGRWLEANQAVLDLLQLNKIDYRG 84 Query: 245 EYYAHKDDVLKTEKY---------------PLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + A D++K + E+E + Sbjct: 85 KTDAEIFDIIKHVNALSCYQKILLDSQCKDEKAWQLQKVYQEEEKIRQNDGILRIYDVMK 144 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348 L + + + + V+ G + N Sbjct: 145 VPLFTATGVRKGLVILGRDITAKKQAEADYIRLASMVESSEDAIIGNTLDGIIVSWNEGA 204 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + Y +V+ I + L + P + + + Sbjct: 205 KQIYGYSAVEAIGSPISMLALPERPNEMP----RILTSITAQGGIDHYETIHVR---QDG 257 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 ++ ++ + + + I + + + +E Q IL++ +GI + Sbjct: 258 ANIDVSLTISPIKDALGQITGISMIARDISYRKRIECTLEQLRHQNELILDSAGEGICGL 317 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLT-----EILS 518 NR+G I N A +++ GY + +++ + + L L Sbjct: 318 NRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATLE 377 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAK 575 + + K+ +L + + + +T DI+E + + Sbjct: 378 DGKVRYVTDGVFWR-KDGTILPVEYVSTPMRQEGAIIGAVITFKDITERQAME------- 429 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 K +F++ VSHE+RTPLT+I G + + + + + + Sbjct: 430 -------KMKDEFISVVSHELRTPLTSIRGSLGL-LSSGLLASSPQKSERMLDIAMFNCD 481 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 ++ +VND+LD+ ++ SG++ + V++ + + +A + A + + + Sbjct: 482 RLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGVDLCVV--PLEF 539 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 +++ D + Q+ N+LSN+I F+ + +I + N V++ VRD G G+ ++E Sbjct: 540 KVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQEN-HVLISVRDRGRGIPPDKIET 598 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F Q+ S + GTGLGL + +++V + GK + S G+ + P+ Sbjct: 599 IFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGDGSTFFVSLPI 653 Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 100/393 (25%), Gaps = 32/393 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIG--DLLKRQNTW 143 D+ G E ++ + + G ++ + + I K + W Sbjct: 59 DSQGRWLEANQAVLDLLQLNKIDYRGKTDAEIFDIIKHVNALSCYQKILLDSQCKDEKAW 118 Query: 144 YGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + + D+ +P+++ G G A R Sbjct: 119 QLQKVYQEEEKIRQNDGILRIYDVMKVPLFTATGVRKGLVILG--RDITAKKQAEADYIR 176 Query: 200 LDKKFSHLHEI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 L + G E S + + +L E +L Sbjct: 177 LASMVESSEDAIIGNTLDGIIVSWNEGAKQIYGYSAVEAIGSPISMLALPERPNEMPRIL 236 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + ++ ++D I+++ T L + S + Sbjct: 237 TSITAQGGIDHYETIHVRQDGANIDVSL-TISPIKDALGQITGISMIARDISYRKRIECT 295 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLS 367 ++ + +D + G + + NP+ +T Y + I G Sbjct: 296 LEQLRHQNELILDSAGEGICGLNRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCR 355 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + D+ P+ D + + L + ++ Q Sbjct: 356 SQTPGEPHPDSLQPSPIFATLEDGKVRYVTDGVFW--RKDGTILPVEYVSTPMR-QEGAI 412 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + ++ ME + S++ Sbjct: 413 IGAVITFKDITE----RQAMEKMKDEFISVVSH 441 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 17/118 (14%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS------------DILHIDPNNHIGDL 136 ++ G + I+ + G ++I L ++ + P+ L Sbjct: 317 LNRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATL 376 Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 + + W +GT +P++ + P+ + G Sbjct: 377 EDGKVRYVTDGVFWRKDGTI--LPVEYVSTPMR-QEGAIIGA--VITFKDITERQAME 429 >gi|192361097|ref|YP_001983812.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] gi|190687262|gb|ACE84940.1| two-component hybrid sensor and regulator [Cellvibrio japonicus Ueda107] Length = 761 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 108/642 (16%), Positives = 223/642 (34%), Gaps = 41/642 (6%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 RV L + + G + ++ + L S Sbjct: 128 RVKQQSIQLERERKNLDLVIRGANMGTWQWNVQTGEVILNERWASILGFTLAELSPMSIQ 187 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFH-------TINLNQYTKKQYFGTLQNNSKESF 300 A + + + S E E+ DF+ + L + Sbjct: 188 AWEHMIHPDDLPAARQSLEQHFAEEMDFYDSKFRMCHKDGTWVWVYTRGRVLSRTDQGEP 247 Query: 301 EYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLT 352 ++ E + P + + + Y +P+ L+ Sbjct: 248 LWMFGTHADITELQVYQERLQASEERLQSMIRNFPGAVYRCENNPLWTMHYISPAIERLS 307 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y + G +S L ++ A + + + + + Sbjct: 308 GYLP-ESFMGDGAIS--LTQITHPEDIARHYYRVQMAVNRREPFDVVYRLLHRDG-SWRY 363 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-RE 471 + + ++ + +G + + +++ +L S+ + + IA+ + Sbjct: 364 VQEVGTGIYDEQGQLQFLDGFIWDITQAEEARNAIQLNEQKLSSLYQLSPVAIALHRLAD 423 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G + N ++ GY E+ + + L + EK L Sbjct: 424 GAFVEGNPEFYRMLGYTAEEFPGLSYWDITPTEYAAAEMEQLESLHITGRYGPYEKHYL- 482 Query: 532 STKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 K+ + + + + S + DI+E K+ + K++F Sbjct: 483 -HKDGHQIPVLLNGVLIENSHREKQIWSIIQDITERKRIE--------------QMKNEF 527 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 ++ VSHE+RTPLT+I G +I N G + R + ++ + ++NDLLD+ Sbjct: 528 VSAVSHELRTPLTSISGSLGLILNGMLGEVPV-RARDMLVIAHKNALRLAHLINDLLDME 586 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 K+ +GK++ + +P ++ V ++I ++ YA + + + D + ++Q+ Sbjct: 587 KLAAGKLDFYMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDASVNIDAQRLQQVL 646 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N LSNA+ F+P G ++I+ E+ L V D G G+++ + + F Q S Sbjct: 647 TNFLSNAVKFSPEGSRVILRMRVQ-GRELCLAVTDQGPGISDEFRTRIFQKFSQADASSS 705 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL ++K +V+ G S P +G FPL Sbjct: 706 RQRGGTGLGLAISKELVERMGGNIGFDSIPGEGATFYACFPL 747 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 33/370 (8%), Positives = 93/370 (25%), Gaps = 31/370 (8%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-----NTWYGKTTLW 150 ++E +G ++ M + ++H D L++ + + K + Sbjct: 164 VILNERWASILGFTLAELSPMSIQAWEHMIHPDDLPAARQSLEQHFAEEMDFYDSKFRMC 223 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +GT +V + + SR + FG + + +++ + Sbjct: 224 HKDGT--WVWVYTRGR-VLSRTDQGEPLWMFGTHADITELQVYQERLQASEERLQSMIRN 280 Query: 211 KKGHSSV--EKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 G + + P M + SLT+ +D + + Sbjct: 281 FPGAVYRCENNPLWTMHYISPAIERLSGYLPESFMGDGAISLTQITHPEDIARHYYRVQM 340 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317 + + + ++ + + + Sbjct: 341 AVNRREPFDVVYRLLHRDGSWRYVQEVGTGIYDEQGQLQFLDGFIWDITQAEEARNAIQL 400 Query: 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E P+ ++ G NP F + Y + + GLS P Sbjct: 401 NEQKLSSLYQLSPVAIALHRLADGAFVEGNPEFYRMLGYTAEE----FPGLSYWDITPTE 456 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + + + + + + + + I Sbjct: 457 YAAAEMEQLESLHITGRYGPYEKHY--LHKDGHQIPVLLNGVLIENSHREKQI--WSIIQ 512 Query: 436 EDVDTRINKR 445 + + + ++ Sbjct: 513 DITERKRIEQ 522 Score = 57.0 bits (136), Expect = 2e-05, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 77/245 (31%), Gaps = 14/245 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTL 149 A G E + E + +G A + G+ D++ + + L + Sbjct: 422 ADGAFVEGNPEFYRMLGYTAEEFPGLSYWDITPTEYAAAEMEQLESLHITGRYGPYEKHY 481 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G +P+ L + I + +RE + + I+ + + + HE Sbjct: 482 LHKDGHQ--IPVLLNGVLIENSHRE---KQIWSIIQDITERKRIEQ--MKNEFVSAVSHE 534 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 ++ +S+ I + +R ++ + AHK+ + L E Sbjct: 535 LRTPLTSISGSLGLILNGMLGEVPVRARDML-----VIAHKNALRLAHLINDLLDMEKLA 589 Query: 270 PEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + DF+ +Q +++ ++ L ++ + + L + Sbjct: 590 AGKLDFYMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDASVNIDAQRLQQVLTNF 649 Query: 329 CPIPF 333 Sbjct: 650 LSNAV 654 >gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 579 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 167/391 (42%), Gaps = 28/391 (7%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 N + + ++ + +++ +L +++E G+ +I+ G I NR+ Sbjct: 208 RRSDRLGRAMNSLAVDLMEMTRTQ---DMQRDRLLTVIENIGSGLILIDGRGFINLVNRS 264 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEK 537 +K F E +LR+ + E + + LR + + Sbjct: 265 YTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGV 324 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L HD++E K+ + + DF+A VSHE++ Sbjct: 325 PI-----MGPDDEWKGIVLVFHDMTEIKKLE--------------QIRKDFVANVSHELK 365 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+T+I GF+E + + + ++ + I + + +V DLLD+SK+E + Sbjct: 366 TPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTM 423 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E + + E +L+Q A EK I + + D +KQ+ LN+ +NA+ Sbjct: 424 RVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALT 483 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +TP G + IS V ++V DTG+G+ E+ + + F ++ + GTGLG Sbjct: 484 YTPEKGTVGISVNVKET-VVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLG 542 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + K +++A+ G + S P +GT+ + Sbjct: 543 LAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573 >gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 350 bits (899), Expect = 4e-94, Method: Composition-based stats. Identities = 93/510 (18%), Positives = 197/510 (38%), Gaps = 29/510 (5%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + + + + P+ + G + N F+ L S + + ++ Sbjct: 3 TRERQKDIDHYRLIFEFSPLAMIRFDKTGTIIDCNQKFIDLMG-SSREKLIGFNTITRTT 61 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + A + ++ N+ + F P EK Sbjct: 62 PKMSAAVKQA--------VEGATSEYEDIYTSVTGNKTTYIRAVFNPIEKGK---NPTEV 110 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489 + + + + ++ + + E T D I + + + A + GYP Sbjct: 111 IATLEDISERKRVEEELAKTEARFKIMAENTKDLIYYFSVPDKTFKYVSPACLDVTGYPP 170 Query: 490 E--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + F + M+ ++ + +E + + K L + Sbjct: 171 GTFYADSQFFFDMVHPEWQEFMHQQWMDMAHGKMSPLVEYQIIDRYGKTKWLQQSNVPFY 230 Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + D++E K ++ H K AE S KS+FLA +SHEIRTPL I+G Sbjct: 231 DEEGNPIRVEGIVRDVTELKNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMG 290 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++++ P+ EY N ++ + ++++D+LD++++E+GK+NL+ + + Sbjct: 291 MLQLMESE----TQTPKQGEYVNAAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPA 346 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + L ++ + + ++ +P + D ++QI NI+ NA+ FT G Sbjct: 347 DELKHVFELFEVTSRHSGVNLKLKLPPELPLTVTGDPARLQQILTNIVGNALKFTHEG-H 405 Query: 725 IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 ++I+ ++ V DTGVG+ + ++ + F Q + +G GLGL Sbjct: 406 VLITAQLLPRSTPGNCHILFTVEDTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLS 465 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K + + G + S +GT I P Sbjct: 466 ICKRLTELMGGTIAVESNVEQGTTFYISIP 495 >gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] Length = 579 Score = 350 bits (899), Expect = 5e-94, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 167/391 (42%), Gaps = 28/391 (7%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 N + + ++ + +++ +L +++E G+ +I+ G I NR+ Sbjct: 208 RRSDRLGRAMNSLAVDLMEMTRTQ---DMQRDRLLTVIENIGSGLILIDGRGFINLVNRS 264 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEK 537 +K F E +LR+ + E + + LR + + Sbjct: 265 YTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGV 324 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L HD++E K+ + + DF+A VSHE++ Sbjct: 325 PI-----MGPDDEWKGIVLVFHDMTEIKKLE--------------QIRKDFVANVSHELK 365 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+T+I GF+E + + + ++ + I + + +V DLLD+SK+E + Sbjct: 366 TPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTM 423 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E + + E +L+Q A EK I + + D +KQ+ LN+ +NA+ Sbjct: 424 RVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALT 483 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +TP G + IS V ++V DTG+G+ E+ + + F ++ + GTGLG Sbjct: 484 YTPEKGTVGISVNVKET-VVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLG 542 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + K +++A+ G + S P +GT+ + Sbjct: 543 LAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573 >gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 997 Score = 350 bits (899), Expect = 5e-94, Method: Composition-based stats. Identities = 104/750 (13%), Positives = 217/750 (28%), Gaps = 70/750 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGK 146 D + + + A +G + + + +T + Sbjct: 147 TDLDRRVTVFNPAAERMFRCPAGAALGRPVTEFVPDESL-------AAGAPGDTPPLAAR 199 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W + P++++ R R F IV +R S Sbjct: 200 PGAWGVRAGGKRFPVEVSVSRGDDRGRRFYTL----IVRDVTDRVRMEDELRRTAGLLSA 255 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + E V+ + ++ + D+ + + L Sbjct: 256 VVEGTTDAVFVKDREGRYLLANPATAAFLRRPAEDIIGRTDAELMPPDEARQVRAHDLQA 315 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E+ + ++ + S + + + Sbjct: 316 MAADRAVSIEEQLVLGGTRHAFLSTKAAYRTASGAVVGVIGISRDVTERNRLATERDALL 375 Query: 324 ETVD----KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + P+ + ++ + NP+ + Y + + G Sbjct: 376 ARLQLQIGRMPLAYVLFDTDLRIVDWNPAAERMFGYTREEALGRDG------LELAAPSF 429 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 +L R + ++ + + + + + + Sbjct: 430 RPTAERLLGRIRGGDMTVHPVGENVRKDGRVIVCEWYN-TPLMDPDGRYTGLLSLGQDVT 488 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRK 495 + + + A + GI I + G I+ + +L GY + L + Sbjct: 489 ARVAAEEALRQRDR----AIHAVTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEALGR 544 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 ++T L + L + T+ L K+ + + + Sbjct: 545 NCRFLQGKDTDPAAVDRLRDALRDERACTV--ELLNYRKDGTAFWNELSLSPVRDGGDRV 602 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + + D+++ + + + A+K+ ++H+ LT I GFSE+ Sbjct: 603 TQFVGVLTDVTQRRALEEQFRQAQKM-----EAIGQLAGGIAHDFNNLLTVINGFSELTL 657 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 Q + I +G + LL S+ E + + L+ V A Sbjct: 658 RQL---PTDDPCQPLVTEIRDAGERATRLTRKLLTFSRKE----VVEPVVLDLNATVDGA 710 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729 +++ + + + + R+ AD V+Q+ LN+ NA P GG + + T Sbjct: 711 RGMLRWLL-GEGVRLVVKSDPRLDRVRADAGHVEQVILNLAVNARDAMPHGGTLTVGTAN 769 Query: 730 ----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + V L V DTGVGMT K +PF G+GTGLGL Sbjct: 770 VTSDGPSGPGRVPAGRYVRLSVADTGVGMTEEIQAKIFEPFFTTKA----IGQGTGLGLS 825 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V G + S P +G E+ FP Sbjct: 826 TVYGIVQQTGGHIRVTSAPGRGATFEVYFP 855 Score = 118 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 46/420 (10%), Positives = 99/420 (23%), Gaps = 22/420 (5%) Query: 176 SGFRGFGIVHVNRVDNDPRALGKRL-----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 G R F + +D P A+G+ L + + + + E + + Sbjct: 100 VGVRDFVTKSLEYLDYLPDAVGRVLGQVRTEHQLAGIIESARDAIISTDLDRRVTVFNPA 159 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 RM + + V + L + + Sbjct: 160 AE--RMFRCPAGAALGRPVTEFVPDESLAAGAPGDTPPLAARPGAWGVRAGGKRFPVEVS 217 Query: 291 TLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYAN 345 + + + Y + + L V+ FV G AN Sbjct: 218 VSRGDDRGRRFYTLIVRDVTDRVRMEDELRRTAGLLSAVVEGTTDAVFVKDREGRYLLAN 277 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 P+ + + D I L P + + +DR + Sbjct: 278 PATAAFLRRPAEDIIGR---TDAELMPPDEARQVRAHDLQAMAADRA-----VSIEEQLV 329 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 A + GI + + + + + +L + Sbjct: 330 LGGTRHAFLSTKAAYRTASGAVVGVIGISRDVTERNRLATERDALLARLQLQIGRMPLAY 389 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 + + + I+ N A ++FGY E+ L + + L I D+ Sbjct: 390 VLFDTDLRIVDWNPAAERMFGYTREEALGRDGLELAAPSFRPTAERLLGRIRGGDMTVHP 449 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + P D++ + L + + Sbjct: 450 VGENVRKDGRVIVCEWYNTPLMDPDGRYTGLLSLGQDVTARVAAEEALRQRDRAIHAVTQ 509 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 40/431 (9%), Positives = 102/431 (23%), Gaps = 18/431 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G + + A +IG ++ L+ Sbjct: 264 VFVKDREGRYLLANPATAAFLRRPAEDIIGRTDAELMPPDEARQVR--AHDLQAMAADRA 321 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKK 203 + + + + G G + NR+ + AL RL + Sbjct: 322 VSIEEQLVLGGTRHAFLSTKAAYRTASGAVVGVIGISRDVTERNRLATERDALLARLQLQ 381 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + + + R + E A + Sbjct: 382 IGRMPLAYVLFDTDLRIVDWNPAAERMFGYTREEALGRDGLELAAPSFRPTAERLLGRIR 441 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + ++ + + + Y L + LS + +E Sbjct: 442 GGDMTVHPVGENVRKDGRVIVCEWYNTPLMDPDGRYTGLLSLGQDVTARVAAEEALRQRD 501 Query: 324 ETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + + + +P F LT Y + + + G + K +D Sbjct: 502 RAIHAVTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEAL----GRNCRFLQGKDTDPA 557 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A+ + D L + + + + G+ + Sbjct: 558 AVDRLRDALRDERACTVE--LLNYRKDG-TAFWNELSLSPVRDGGDRVTQFVGVLTDVTQ 614 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R + + + ++ +I + G + ++ N D +P Sbjct: 615 RRALEEQFR-QAQKMEAIGQLA--GGIAHDFNNLLTVINGFSELTLRQLPTDDPCQPLVT 671 Query: 500 FLEQNTPSVMN 510 + Sbjct: 672 EIRDAGERATR 682 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 40/485 (8%), Positives = 102/485 (21%), Gaps = 54/485 (11%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPI 152 + +S + G A + +G C DP + + D L+ + + + Sbjct: 523 IVFVSPGFERLTGYSAAEALGRN-CRFLQGKDTDPAAVDRLRDALRDERACTVELLNYRK 581 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +GT +L+ P+ + F G++ ++ K + Sbjct: 582 DGTAF--WNELSLSPVRDGGDRVTQF--VGVLTDVTQRRALEEQFRQAQKMEAIGQLAGG 637 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 I + T L + + Sbjct: 638 IAHDFNNLLTVINGFSELTLRQLPTDDPCQPLVTEIRDAGERATRLTRKLLTFSRKEVVE 697 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 +N + L R + A E + Sbjct: 698 PVVLDLNATVDGARGMLRWLLGEGVRLVVKSDPRLD-RVRADAGHVEQVILNLAVNARDA 756 Query: 333 FFVYSHGNLFYAN--------------PSFLLL----TKYKSVDDIEIAGGLSTLLDAPK 374 + AN ++ L T ++I A Sbjct: 757 MPHGGTLTVGTANVTSDGPSGPGRVPAGRYVRLSVADTGVGMTEEI-QAKIFEPFFTTKA 815 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + +Y + + + P + Sbjct: 816 IGQGTGLGLSTVY---GIVQQTGGHIRVTSAPGRGATFEVYFPSAGRDPADAQAAHAAEP 872 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + ++ + + R + FGY V D Sbjct: 873 GGPTGRGT----------------------VLVVEDDDRVRRLARIALQRFGYTVLDAPS 910 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + ++ LT+++ + + + + + + + Sbjct: 911 AEEALRVCERPEPPIDLLLTDVVMPGMGGRELAEVVARLRPG--IKVLYVSGYADDAVVR 968 Query: 555 SLTMH 559 + Sbjct: 969 HGVLR 973 >gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 936 Score = 350 bits (899), Expect = 5e-94, Method: Composition-based stats. Identities = 115/508 (22%), Positives = 212/508 (41%), Gaps = 23/508 (4%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + G + + N SF +LT + + + + G LL Sbjct: 142 QQQKYVKRLSLVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTSPG--QLLQG 199 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 PK + + ++ + R + N N + + + Sbjct: 200 PKTCEKSRK---VMSHAVRNGLPFQVETINYDKNG-NVYWVAIDANPVRDDEGQVKHFIA 255 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 IE ++ M S+++ D + ++ G +L N+A ++ V + Sbjct: 256 IETNITQRVKAEQAMAEIEYNYHSVVDNIPDIVLRLDTFGNLLFINQAWQRVLQSNVNES 315 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551 L P F+ + ++ L + + R + + I + + Sbjct: 316 LGLPIIKFIAKEDVEKISSTLLDY-NQGKRDIRRFDIRLINAQGINNWVEITLTPIVGGY 374 Query: 552 ----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 S + T+ DI E + + L AK AE + KS F+A +SHEIRTPL A+IG + Sbjct: 375 ESDLSSIAATLVDIQERIESEQILLEAKHQAETLAESKSRFMANISHEIRTPLNAVIGSA 434 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ + + Y I S + +L +++D+L S+ E+ + L +P S+D Sbjct: 435 DILHHTGLTS----EQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAITLDNQPFSIDTC 490 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 + EAI ++ A +KR+ + F ++P +++ D V+QI +N+L+NAI FT G I Sbjct: 491 IEEAIDIITQSALQKRLEVIFDFYPDVPAQVIGDHARVRQIVINLLANAIKFTQHG-VIT 549 Query: 727 ISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 ++ T N + L V+DTG+G+ ++E PF Q NS + G+GLGL + K Sbjct: 550 VTVRCTHIKGNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKHGGSGLGLAICK 609 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + D G + S KG+ + +PL Sbjct: 610 QICDVVGGDISVSSELNKGSEFIVNYPL 637 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 82/264 (31%), Gaps = 17/264 (6%) Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + F N Y N ++ Y + I ++ L++ + Sbjct: 22 SNRRQAKLLAILDECIFECDKHLNFTYINEAWEKKLGYSNDSLIGSN--ITKLMNCEDIM 79 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 A +L A IQ L F ++ + Sbjct: 80 HFVAYSCCLLEGKQ-------APSVEIQIKNSLGLMNWFELRLVYDEKSGFIGSFYDIQR 132 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 D++ + + V +L + T++ + I ++ G+I N++ L G+ ++++ Sbjct: 133 HKDSQFLLTQQQKYVKRLSLVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTS 192 Query: 497 FTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 L+ T ++ + L + T+ K + + I + Sbjct: 193 PGQLLQGPKTCEKSRKVMSHAVRNGLP--FQVETINYDKNGNVYWVAIDANPVRDDEGQV 250 Query: 554 --YSLTMHDISEWKQEKNKLSHAK 575 + +I++ + + ++ + Sbjct: 251 KHFIAIETNITQRVKAEQAMAEIE 274 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 39/385 (10%), Positives = 101/385 (26%), Gaps = 20/385 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D H I+E K +G +IG + + + I L Sbjct: 37 IFECDKHLNFTYINEAWEKKLGYSNDSLIGSNITKLMNCEDIMHFVAYSCCLLEGKQAPS 96 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 L +L +Y F G F + ++ ++ K+ S Sbjct: 97 VEIQIKNSL-GLMNWFELRL--VYDEKSGFIG--SFYDIQRHKDSQFLLTQQQKYVKRLS 151 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDD---VLKTEKYP 260 + + + I L ++V + + + Sbjct: 152 LVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTSPGQLLQGPKTCEKSRKVMS 211 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + N N Y ++++ + +++ + + ++ Sbjct: 212 HAVRNGLPFQVETINYDKNGNVYWVAIDANPVRDDEGQVKHFIAIETNITQRVKAEQAMA 271 Query: 321 LTP----ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 VD P GNL + N ++ + + + + + A + Sbjct: 272 EIEYNYHSVVDNIPDIVLRLDTFGNLLFINQAWQRVLQSNVNESLGLPIIK---FIAKED 328 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + + R RL I N+ + + Sbjct: 329 VEKISSTLLDYNQGKRDIRRFDIRL--INAQGINNWVEITLTPIVGGYESDLSSIAATLV 386 Query: 436 EDVDTRINKRKMEIEVMQLCSILEA 460 + + +++ + Q ++ E+ Sbjct: 387 DIQERIESEQILLEAKHQAETLAES 411 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 6/134 (4%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +L +IL+ + I ++ N A K GY + ++ T + Sbjct: 24 RRQAKLLAILD---ECIFECDKHLNFTYINEAWEKKLGYSNDSLIGSNITKLMNCEDIMH 80 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 Y +L ++E S LR++ S + + +DI K + Sbjct: 81 FVAYSCCLLEGKQAPSVEIQIKNSLGLMNWFELRLV---YDEKSGFIGSFYDIQRHKDSQ 137 Query: 569 NKLSHAKKIAEKES 582 L+ +K ++ S Sbjct: 138 FLLTQQQKYVKRLS 151 >gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 576 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 122/571 (21%), Positives = 216/571 (37%), Gaps = 55/571 (9%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---------VYSHGNLFYANPSF 348 ++ + + T F HG + N Sbjct: 4 PPVDHPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGA 63 Query: 349 LLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASA 398 + Y S D ++ L+ + P+ L I Sbjct: 64 ERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIY 123 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEV 451 L I+ + AM + + I ++ + + +++ + Sbjct: 124 ELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQ 182 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 S++E+ D + + + +GII N+ + L G ++++ P F P+ + Sbjct: 183 FYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADA 240 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569 + +LS E E ++S D++E K+ + Sbjct: 241 AIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFER 300 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + Y Sbjct: 301 TLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDA-QRRYIGD 359 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 360 IFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLE 419 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------------ 737 + + D R KQI N+L+NA+ F+ GG + ++ S +V Sbjct: 420 TEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILDGDWPVHSF 479 Query: 738 -----------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + Sbjct: 480 SLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTE 539 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + G + S G + P+ + Sbjct: 540 LHGGCVAVASVKDLGARFVVWLPIRTPATEE 570 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + L + + R L D Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423 Score = 45.0 bits (105), Expect = 0.050, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G + R Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167 Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244 + + L E + + I R ++++ Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + SE + + + T + ++ + Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329 + F+ ++ Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312 >gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal transduction histidine kinase) [Desulfobacterium autotrophicum HRM2] Length = 772 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 118/397 (29%), Positives = 187/397 (47%), Gaps = 33/397 (8%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E+ +L +E + + I + G I N ++ GY V ++L + V Sbjct: 228 EEEIRKLLRAVEESPSSVVITDAFGAIEYVNTKFCEVTGYTVSEVLGQNPRVLNSDIQSK 287 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + E LS K+ L I L + Y D++E Sbjct: 288 AFYREMWETLSQGQEWRG--EFCNKKKDGTLYWEHASISPLCDARGNITHYVAVKEDVTE 345 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ +L A++ AE + KSDFL +SHE+RTPL AIIGFSEV++++ FGPL + + Sbjct: 346 TKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDRFFGPLTD-KQ 404 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY + I +G +L ++ND+LD+SK+E+GKM L + V + +A+ + +++ Sbjct: 405 SEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIKSVKVSDAIETGLVMLKEKIACHG 464 Query: 684 ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735 I ++T F ++ AD R +KQI NILSNA+ FTP GG I I + Sbjct: 465 ITVKTDFKETCHKLTLAADERKLKQIIFNILSNAVKFTPDGGTITIEMMVLDPDPIPGTD 524 Query: 736 -----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +I+ + DTG+G+++ +L + F Q + GTGLGL Sbjct: 525 ILPDWMQKATGQVGKQPHLIISIADTGIGISSEDLPHIFEEFYQTLAGIRASTPGTGLGL 584 Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814 PL+K M + + G S P KG+ ++ PL S Sbjct: 585 PLSKRMAELHGGTIMAHSEGPDKGSRFTLLMPLMTVS 621 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 22/239 (9%) Query: 43 NPCHDSFEQSNFTDQ----NQESVSNTNYLDSENTF-----VFDPIPRTVRFTWN----- 88 P Q T N E + + S F + I + +R Sbjct: 186 PPVSQKVSQPAGTCSCRLCNLEDTTEASTAHSTPPFFMNGRPEEEIRKLLRAVEESPSSV 245 Query: 89 --IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 DA G ++ ++ + + G +++G ++ + + + L + W G Sbjct: 246 VITDAFGAIEYVNTKFCEVTGYTVSEVLGQNPRVLNSDIQSKAFYREMWETLSQGQEWRG 305 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +GT + P+ + + + ++ + Sbjct: 306 EFCNKKKDGTLY--WEHASISPLCDARGNITHY--VAVKEDVTETKRILQELEKAREAAE 361 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLT 263 + K + + ++++ LT+ + D + LL+ Sbjct: 362 VSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDRFFGPLTDKQSEYLDDILGAGQHLLS 420 >gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 725 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 111/385 (28%), Positives = 193/385 (50%), Gaps = 8/385 (2%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 GI D ++++++ + ++L + + + ++ E I TN VS+ FG E Sbjct: 341 GINSMLQDLELSQKEVMHRESEKHALLNSLIEVLIYLDSELKIAWTNNKVSEYFGEKTEA 400 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 I + L + ++ ++ + L+ Q+ E + + I + Sbjct: 401 ITGRT-HHELWGDKNPILAPFVRKALNNGKTQSFEINVSDKDSWTGEIW-SVTIGSVRDR 458 Query: 552 SCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + ++ DI+E K+ + K+ AK +AE + KS+FL+ +SHE+RTPL A+IGF+ Sbjct: 459 DGKLIGTIESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFA 518 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 +++ + FGPL N + + I SG +L ++N++LD+SKIE+GKM S+ E Sbjct: 519 DILNEEGFGPL-NKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEK 577 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 E ++ ++K+I I + I I +D Q+ N++SNAI FT GG + + Sbjct: 578 FDEIKDILFPVFSKKKIRIEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKV 637 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S + + L V+DTG+G+T +L K PF Q+ + + EGTGLGL L MV Sbjct: 638 SARKN-GDMLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQMVQL 696 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYD 812 G+ +FS P G+ + PL + Sbjct: 697 MGGEICVFSQPGIGSEFICMIPLKN 721 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 9/137 (6%), Positives = 33/137 (24%), Gaps = 3/137 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ + + ++ + G + G ++ + + L T + Sbjct: 377 LDSELKIAWTNNKVSEYFGEKTEAITGRTHHELWGDKNPILAPFVRKALNNGKTQSFEIN 436 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + + R+ + G + + + + Sbjct: 437 VSDKDSWTGEIWSVTIGS-VRDRDGKLIGT--IESILDITEVKKSEEKMLQAKILAENSN 493 Query: 209 EIKKGHSSVEKEKYDIF 225 K S + Sbjct: 494 RSKSEFLSNMSHELRTP 510 >gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis NIES-39] Length = 1336 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 160/389 (41%), Gaps = 23/389 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILRKPF 497 R++ L LEA G+ + ++ G I N+ + LF + + Sbjct: 436 RQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEHIPEVSLEDFAGINNL 495 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--S 555 + L L + + SL + Sbjct: 496 YLNGTDQVYPTKALPLIRALKGKIVPIENIEIRHPD-QTICCSLMATPIFDSDEAIVYGI 554 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSE 608 DI++ +Q + + + K ++++ K +FLA SHE+RTPL +IG SE Sbjct: 555 AVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSE 614 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + GPL + + I +SG+ + +VND+LD SK+ + L +P+ L E V Sbjct: 615 SMLDGVGGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIV 673 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + L + K I + + P + AD ++QI N++ NAI FT SG + I+ Sbjct: 674 EVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSG-TVKIT 732 Query: 729 TTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + E ++ + DTG+G+ + + + F Q S + GTGLGL + K + Sbjct: 733 ASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQL 792 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 V+ + GK ++ S G+ P+ + Sbjct: 793 VELHQGKIWLDSVVDSGSTFSFTLPISEE 821 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 21/218 (9%), Positives = 62/218 (28%), Gaps = 6/218 (2%) Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + ++ K ++ + + + Q S Sbjct: 364 IGMFMARRVTRPLVNLNKAARKFAQGDWEHSVNISRCQEVGELAQSFNQMAAQIRQSFSE 423 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + +L+ + E + ++ P+ VY +GN++YAN L +++ + + Sbjct: 424 LEEQNNISKALNRQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEHIPE 483 Query: 360 --IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 +E G++ L ++ + I+ + + + Sbjct: 484 VSLEDFAGINNLYLNGTDQVYPTKALPLIRALKGKIVPIENI--EIRHPDQTICC-SLMA 540 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + + + R + + + QL Sbjct: 541 TPIFDSDEAIVYGIAVFEDITQRRQAEMERQNFTKQLK 578 >gi|317052667|ref|YP_004113783.1| PAS sensor protein [Desulfurispirillum indicum S5] gi|316947751|gb|ADU67227.1| PAS sensor protein [Desulfurispirillum indicum S5] Length = 753 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 98/632 (15%), Positives = 213/632 (33%), Gaps = 21/632 (3%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 L + L G + +++ L ++ + Sbjct: 127 QKRKEELLANRQRWQFALEGTNIGVWDWNIQSSEVYFSPRWKEILGYRDHELPNSLEQWQ 186 Query: 250 KD------DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEY 302 + + P + + + + N + Sbjct: 187 QRIHPDDYQRVMQAHEPAFSKSDRLYRSEYRLRHRDGNYRWISSQGKVMSWARDGTPLRM 246 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + + +E + ++ + + G + + N + + +D+ Sbjct: 247 IGTHADITERKILEEQQERMVRILEATTDSVNIATPDGTMIFWNSHGRAMVGVEPDEDVT 306 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L PK + ++ + I ++ +T + Sbjct: 307 AISF--DLFHPPKSLKILTRVAIPSAITNGIWQGENV----ITNRHGKTIPVTQVIIAHR 360 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 +Q + I + + + + +L +LE+T G+ IIN G I N A+ Sbjct: 361 DQQGNLEYLSSIMRDMSPQKKVEEALRSSEQRLWRLLESTPLGVVIINSCGTIEWVNPAM 420 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540 Y E + T L + + + + + + + E + E L Sbjct: 421 CHKVHYHFESLAGHSLTKILPEESRMAWHQWFEQFGNAHTSSSEEWKFVRRGGESFLAEI 480 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + + DI++ K+ +++L + + E+ + KS F+ VSHE RTPL Sbjct: 481 VSTSFADTSGQWRMVAYVTDITKRKRFEDELLRSLRQQEELNELKSTFVQMVSHEFRTPL 540 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+G +E + + L R E+ + I ++ ++ ++L + ++SG+ N Sbjct: 541 AGIMGSAE-LLKKYLERLSPERRDEHLDTILSGVQRMVFMMEEILALGAMDSGQTNFSPS 599 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PV L + +RI + + D + I N+LSNA+ ++P Sbjct: 600 PVDLVAMCRAIQDQLHSIFPGQRIQLDFRDIPTCAML--DESLLHHILTNLLSNALKYSP 657 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + + S + +E+ RV D G+G+ + + + F + S +GTG+G+ + Sbjct: 658 ATSPVHFSI-FNTTKELCFRVTDFGIGIPESDRGRLFEAFFR--GSNASHIQGTGIGMMI 714 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +D + G I S P +G+ + PL Sbjct: 715 VKRCLDLHNGTIQIQSKPNQGSTFTVTIPLSQ 746 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 41/519 (7%), Positives = 115/519 (22%), Gaps = 54/519 (10%) Query: 96 KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPI 152 S + +G ++ + + + + Y Sbjct: 161 VYFSPRWKEILGYRDHELPNSLEQWQQRIHPDDYQRVMQAHEPAFSKSDRLYRSEYRLRH 220 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 N + ++R+ R G +R+ + + Sbjct: 221 RDGNYRWISSQGKVMSWARDGTP--LRMIGTHADITERKILEEQQERMVRILEATTDSVN 278 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + ++ ++ S ++ K + T Sbjct: 279 IATPDGTMIFWNSHGRAMVGVEPDEDVTAISFDLFHPPKSLKILTRVAIPSAITNGIWQG 338 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + Q ++ S + E ++ Sbjct: 339 ENVITNRHGKTIPVTQVIIAHRDQQGNLEYLSSIMRDMSPQKKVEEALRSSEQRLWRLLE 398 Query: 328 KCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P+ + S G + + NP+ Y + + L + +++ + + Sbjct: 399 STPLGVVIINSCGTIEWVNPAMCHKVHY-HFESLAGHSLTKILPEESRMAWHQWFEQFGN 457 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + ++ E+ LA + + + + Sbjct: 458 AHTSSSEEW-----KFVRRGGESFLAEIVS--TSFADTSGQWRMVAYVTDITKRKRFEDE 510 Query: 447 M------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK-LFGYPVEDILRKPFTV 499 + + E+ +L S + + L G L K + Sbjct: 511 LLRSLRQQEELNELKSTF---------------VQMVSHEFRTPLAGIMGSAELLKKYLE 555 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRIIIK 546 L + + + E + LG+ + +++ + Sbjct: 556 RLSPERRDEHLDTILSGVQRMVFMMEEILALGAMDSGQTNFSPSPVDLVAMCRAIQDQLH 615 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + L DI L H ++ K Sbjct: 616 SIFPGQRIQLDFRDIPTCAMLDESLLHHILTNLLSNALK 654 >gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 577 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 163/370 (44%), Gaps = 41/370 (11%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ E ++ +I++ DG+ + G I+ N A K+ + L P Sbjct: 243 KETLNDIQGEKNKIEAIIKFMKDGVVAADANGNIIHYNEAAEKMLNKKLS--LGMPVEEV 300 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMH 559 L T + ++L + K+ Y MH Sbjct: 301 LPLKEAENPIPM--------------------TCDNRVLMINAASVKINNQVEGYVYVMH 340 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + + +F+A VSHE+RTPL I + E + + + Sbjct: 341 DITEQHKL--------------DQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVD 383 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I+ + + +V DLL +SK++S + +L EP +E V ++ + + A Sbjct: 384 TEYSKKFLRIIETETDRMTRLVKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEA 443 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + + + + ++ D V+Q+A+NI++NAI +TP GG I IST + V Sbjct: 444 TKKGHNVILNLSETLQKVNVDKDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTF 502 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G+G+ +L + + F ++ ++ GTGLGL + K +V+ + GK I S Sbjct: 503 TVKDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELG 562 Query: 800 KGTLIEIIFP 809 KGT++ + P Sbjct: 563 KGTVVTVQLP 572 >gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 568 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 161/373 (43%), Gaps = 41/373 (10%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ E ++ +I++ +DG+ + +G I+ N A K+ +E L P Sbjct: 234 LRLKQTLNDIQGEKNKIEAIIQFMTDGVVATDAKGNIIHYNEAAEKMLNVKLE--LGMPI 291 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSL 556 L + K+L++ I K Y Sbjct: 292 EGILNLEKEDAVATM--------------------NCGNKVLTVNIAPLKSNQQIEGYVY 331 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +HDI+E + + + +F+A VSHE+RTPL I + E + + Sbjct: 332 VLHDITEQHKL--------------DAMRKEFVANVSHELRTPLATIKSYVETLL---YS 374 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + ID + + +V DLL +SK++S NL FE +L+E + + I+ + Sbjct: 375 DVDAEYLKRFLKIIDSETDRMTRLVKDLLLLSKMDSEDKNLKFEHKNLNEVIIDVINRLS 434 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + A++K + + D ++Q+ +N+++NAI +TP G I + T + Sbjct: 435 IEAHKKNQKLIVDLQETPRHVYIDKDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENF 493 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D G+G+ +L + + F ++ ++ GTGLGL + K +V+ + G+ I S Sbjct: 494 ATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIES 553 Query: 797 TPAKGTLIEIIFP 809 KGT++ + P Sbjct: 554 EVGKGTIVRVKLP 566 >gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 1263 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 132/736 (17%), Positives = 255/736 (34%), Gaps = 62/736 (8%) Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE- 174 R + + L D + ++ ++P++G + +DL+A P E Sbjct: 104 ERFTEFAYPL-FDGRAQLRNIGAAPGMVIR--LVYPLQGNEGAIGLDLSATPDQREAAEQ 160 Query: 175 ---------------FSGFRGF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 G GF + + R G + S Sbjct: 161 ARTSGQPLVTGPVKLVQGGYGFIGRIPVFTYSDSGKKERFWGLVSAVID---VDQLYKAS 217 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 + + + + + H D V+ P + + P+ + Sbjct: 218 GLTGAAQRLDIAIRSAYNSDTDSDIFYGDPAVFHTDPVIAEVTLPNGSWRIGATPKGG-W 276 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + + T+ + + E E L D P+ + Sbjct: 277 PQLAEDAIALRVSVLTIGLLILAPTVLVFRQMRKR-----HENEMLLRSLFDLSPLGIAL 331 Query: 336 YS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G+ N + L T Y + + ++ PK + + + Sbjct: 332 NDYKTGDFLEINNALLGPTGYTRKEFLMLSYWD----ITPKDYEKEESQQLKQLSIRGRY 387 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 I+ N E + Q E + I + + + + Q Sbjct: 388 GPYEKEY--IRKNGERYPVLLNGVLISDTQGREYI--WSIIEDITERKQAEAASRAARQQ 443 Query: 454 -------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 L + + +++ + I N+EG N SK+ GY ++L +P F+ + Sbjct: 444 IEQSQKELQNFFDLSTNFLCIANKEGYFEKINFTFSKVLGYSERELLSEPIVHFIHPDDA 503 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 L ++ L + ++++L P S + T DI+ + Sbjct: 504 ESTLQELNKLARGKPA--LSFVNRYRCYSGEVVTLLWSAACDPVSGKFYATAVDITAQRN 561 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L+ AK AE + KSDFLA +SHEIRTP+ ++G ++ + + + Sbjct: 562 AQLELTQAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSKL----DSEQLRK 617 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 S +L ++ND+LD SK+++GK+ L L + E + L A EK + + Sbjct: 618 VKIAKSSAESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTMALRAQEKDLEL 677 Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742 + + D ++QI N++SNAI FT G +I+I + + + V Sbjct: 678 VLDQSAVEQSMVRGDPGRLRQILTNLVSNAIKFTAEG-EIVIRCQLQPEGDHLLLTVSVS 736 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ ++ PF Q+ S + GTGLGL + K + + G + S +G+ Sbjct: 737 DTGIGIPADKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGITVHSEQGEGS 796 Query: 803 LIE--IIFPLYDTSHP 816 E + + + P Sbjct: 797 CFEFCVRLQRSELTQP 812 Score = 40.0 bits (92), Expect = 1.9, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 6/115 (5%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLWP 151 G EI+ L G + + + D++ + + L R + Sbjct: 337 GDFLEINNALLGPTGYTRKEFLMLSYWDITPKDYEKEESQQLKQLSIRGRYGPYEKEYIR 396 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G P+ L + I + I+ A + ++ Sbjct: 397 KNGE--RYPVLLNGVLISDTQGR---EYIWSIIEDITERKQAEAASRAARQQIEQ 446 >gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato Max13] gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato K40] gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1] Length = 576 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 122/571 (21%), Positives = 216/571 (37%), Gaps = 55/571 (9%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---------VYSHGNLFYANPSF 348 ++ + + T F HG + N Sbjct: 4 PPVDHPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGA 63 Query: 349 LLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASA 398 + Y S D ++ L+ + P+ L I Sbjct: 64 ERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIY 123 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEV 451 L I+ + AM + + I ++ + + +++ + Sbjct: 124 ELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQ 182 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 S++E+ D + + + +GII N+ + L G ++++ P F P+ + Sbjct: 183 FYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADA 240 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569 + +LS E E ++S D++E K+ + Sbjct: 241 AIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFER 300 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + Y Sbjct: 301 TLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDA-QRRYIGD 359 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 360 IFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLE 419 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------------ 737 + + D R KQI N+L+NA+ F+ GG + ++ S +V Sbjct: 420 TEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILDGDWPVHSF 479 Query: 738 -----------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + Sbjct: 480 PLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTE 539 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + G + S G + P+ + Sbjct: 540 LHGGCVAVASVKDLGARFVVWLPIRTPATEE 570 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + L + + R L D Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423 Score = 45.0 bits (105), Expect = 0.050, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G + R Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167 Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244 + + L E + + I R ++++ Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + SE + + + T + ++ + Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329 + F+ ++ Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312 >gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM 12614] gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM 12614] Length = 814 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 116/656 (17%), Positives = 235/656 (35%), Gaps = 40/656 (6%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRL-------DKKFSHLHEIKKGHSSVEKEKYDIF 225 +G + + +A L + + + ++ Sbjct: 168 GRTTGGAVVLRLRDLTGERQMQAELAARNAKISGELHMLHALLDAMPAPAWQRDAEGNLI 227 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + A D + +E+ + + Sbjct: 228 WANQAYAEAVDMTDADLAVKEGASFLDAAARTAMAVQRTEDGCFNARIPIVASGERRV-- 285 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYA 344 + N + + E T+D+ +YS L + Sbjct: 286 -FEVTDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAIYSADRKLQFY 344 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 N +F L + L L A + A V + + + AR Sbjct: 345 NAAFRQLWDLDPAFLESRPEDSAVLDALRAARKIPEQADYRVWRNKMMESYQSLEARESW 404 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----L 458 +L + P G + + +E L + L Sbjct: 405 WHLPDGRTLRVIANPHP-----------QGGVTYIYENVTEQLDLESRYNALTRVQGETL 453 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYL 513 + S+ +A+ +G + N A +++G + + P + T L Sbjct: 454 DNLSEAVAVFGSDGRLRLWNPAFGRIWGLEEDQLTELPHVKEVVSACTLSETERDAWEQL 513 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++ L +K++ ++ + +T D+++ + L Sbjct: 514 AGNVTGLLDNRTQKVSRLERHNGDVVDYATVPLP---DGGTLVTFVDVTDSVNVERALLE 570 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + E+ K+ F+ VS+E+R+PLT IIGF++++ + +FG L + + EYA+YI S Sbjct: 571 KNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGELSD-KQSEYADYIQSS 629 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +L I+ND+LD++ +++G M L V + V+ A+ ++ E RI +RT + Sbjct: 630 SSALLAIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEGLKDRIAEARINLRTHVPGD 689 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I ++AD + ++Q+ N++SNA+ ++ G + +S + + +V V+D G G+ L Sbjct: 690 IGMMVADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSREDD-KVTFVVQDHGYGIPAEIL 748 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F + + R +G GLGL + K+ V+ + G I S KGT + +FP Sbjct: 749 TQVFNRF--VGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSAEGKGTTVTCVFP 802 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 40/397 (10%), Positives = 104/397 (26%), Gaps = 45/397 (11%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W DA G L ++ + + + G D + + + ++ Sbjct: 218 WQRDAEGNLIWANQAYAEAVDMTDADLAVKEGASFLDAAA-------RTAMAVQRTEDGC 270 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + G + N G GI + R ++ Sbjct: 271 FNARIPIVASGERRVFEVT-------DVNANVGGA---GIAVDISELEQAQKELGRAEEF 320 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + ++ + + ++ + + E VL + Sbjct: 321 HGRTLDQLAAAVAIYSADRKLQFYNAAF--RQLWDLDPAFLESRPEDSAVLDALRAARKI 378 Query: 264 SEESSLP-----EQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSL 311 E++ E + ++ + G ++ Y + L Sbjct: 379 PEQADYRVWRNKMMESYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDL 438 Query: 312 SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + ++ + ET+D V+ S G L NP+F + + D + + ++ Sbjct: 439 ESRYNALTRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGRIWGLE-EDQLTELPHVKEVV 497 Query: 371 DAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 A LS+ L + ++ ++ + + + +P Sbjct: 498 SACTLSETERDAWEQLAGNVTGLLDNRTQKVSRLERHNGDVVDYATVPLPDG-------G 550 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + D+ +R + + L + + Sbjct: 551 TLVTFVDVTDSVNVERALLEKNEALEQA-DQIKNAFI 586 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 32/289 (11%), Positives = 84/289 (29%), Gaps = 29/289 (10%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLD 371 ++ ++ VD+ + N + + + G Sbjct: 68 ALEKEKSDLKFRVDRL-EAMLNTDEQRVIVWTGNGAMPQIWGI-----LPEKSG-----V 116 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + A + + L +L + +A Sbjct: 117 PRPPAQLLAFGSWLTAKCAGDLERHLDMLFRTGEAFTTTLKTRTGTYVEALGRTTGGAVV 176 Query: 432 GIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKL 484 + R + ++ + L ++L+A + EG ++ N+A ++ Sbjct: 177 LRLRDLTGERQMQAELAARNAKISGELHMLHALLDAMPAPAWQRDAEGNLIWANQAYAEA 236 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 D+ K FL+ + M + + +I + ++ E ++ + + Sbjct: 237 VDMTDADLAVKEGASFLDAAARTAM-----AVQRTEDGCFNARIPIVASGERRVFEVTDV 291 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + DISE +Q + +L A++ + + +A S Sbjct: 292 NANVGGAG----IAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAIYS 336 >gi|298241884|ref|ZP_06965691.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297554938|gb|EFH88802.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 854 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 110/732 (15%), Positives = 243/732 (33%), Gaps = 46/732 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKR---QNTWYGK 146 G + +I++ +++G + D+ H+ + R T + Sbjct: 151 PDGLVLDINQRPLADAHLRREEVVGTPVTDLPAWSSDPVVQEHLSAAIARASRGETVLFE 210 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P +L + I + +++ G + L Sbjct: 211 AKIHPR--PDLSLDILMTITSHRDASQQVEYLICAG--RDITERKHAEEELRVLIDAIPQ 266 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L + + ++ + L + + + + Sbjct: 267 LVWMAR--PDGSRDYCNRRWCDYTDMTSEQYQGDGWLQAIHPDDQQRVLEVWQHSVQTGR 324 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324 E +++ + ++ ++ + E Sbjct: 325 PYETELRLRQGTTGAYRWFLVRAMQHKDDQGTTLKWFGTCTDIDDQKQAEQRLKASEENW 384 Query: 325 --TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P + G + Y N F + + + ++ G L ++ Sbjct: 385 RVLAETVPQLVWTTRPDGRVDYCNQRFCE-YMHAAFEQLQGYGWRQFL-----HPEDVER 438 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + T + N+ + + G + D + Sbjct: 439 VVALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAGQIVKWFGTCTDIDDQK 498 Query: 442 INKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRK--PFT 498 + + ++ +++++ GI + E +++ N A + GY ED+ + Sbjct: 499 RIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYLHMTGYTQEDVRSRTLNVE 558 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLT 557 + +H L E+ + E + K+ L + + Sbjct: 559 RTTPSEQAHLFHHALQELAARGQHTPFETELVC--KDGSRLPVLVGGVIFQECPRQIIGF 616 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + D S K+ + + K DF++ SHE+R+PLTA+ + + +++ Sbjct: 617 VLDNSARKELEQR--------------KDDFISMASHELRSPLTAMKLQT-TLLHRQLAK 661 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G P + ++ N V +V +LLD+SKI++G++ E V LD + E +Q Sbjct: 662 QGIPASAPALSSMETQINKVSRLVEELLDVSKIQAGRLEYRQETVDLDALLWEIADTMQQ 721 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 RIL+ + ++ +AD + Q+ N+LSNA+ ++P + + + TS E V Sbjct: 722 THPSYRILVHGAVRASL---MADRDRLGQVFTNLLSNAVKYSPDAQTVEMDLS-TSQETV 777 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RV D G+G+ + EK F + Q G G+GL + +V + G + ST Sbjct: 778 TIRVHDHGLGIPREQREKIFDRFYRATGPSQKAIPGLGMGLYIVAEIVKHHGGTIMVEST 837 Query: 798 PAKGTLIEIIFP 809 KG+ + P Sbjct: 838 VGKGSTFTVTIP 849 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 52/510 (10%), Positives = 135/510 (26%), Gaps = 40/510 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWY 144 + +D + + G ++ G C ++ + + + Sbjct: 29 VFVVDDTETIVYANASAQTLTGTTREEVCGTSLWCSAPHLVSPSLYQAVHKAKQTREP-- 86 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + TN ++ + L++ G+ + +P L L + Sbjct: 87 -TEVAYVSPATNRWLHVSLSST---DE----------GLALFFQEQLEPLPLQHALSQDE 132 Query: 205 SHLHEIKKGHSS----VEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKY 259 ++ +G S V + + Q P + + +V + Sbjct: 133 HMYRDLLEGFSDGVMIVTPDGLVLDINQRPLADAHLRREEVVGTPVTDLPAWSSDPVVQE 192 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTK-----KQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + + ++ + ++ S++ + + + Sbjct: 193 HLSAAIARASRGETVLFEAKIHPRPDLSLDILMTITSHRDASQQVEYLICAGRDITERKH 252 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 +E + +D P ++ G+ Y N + T S + + G L + Sbjct: 253 AEEELRV---LIDAIPQLVWMARPDGSRDYCNRRWCDYTDMTS-EQYQGDGWLQAIHPDD 308 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + S +T L Q + + + G Sbjct: 309 QQRVLEVWQ-----HSVQTGRPYETELRLRQGTTGAYRWFLVRAMQHKDDQGTTLKWFGT 363 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D + +++++ + E + +G + N+ + E + Sbjct: 364 CTDIDDQKQAEQRLKASEENWRVLAETVPQLVWTTRPDGRVDYCNQRFCEYMHAAFEQLQ 423 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSS 552 + FL + L E G T R + + Sbjct: 424 GYGWRQFLHPEDVERVVALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAGQ 483 Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + T DI + K+ + L ++K Sbjct: 484 IVKWFGTCTDIDDQKRIEEALRQSQKRIRA 513 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 34/413 (8%), Positives = 91/413 (22%), Gaps = 28/413 (6%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T +E + W G + + + G Sbjct: 248 TERKHAEEELRVLIDAIP-QLVWMARPDGSRDYCNRRWCDYTDMTSEQYQGDGWLQAIHP 306 Query: 125 LHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + ++ + + T Y + A+ + + FG Sbjct: 307 DDQQRVLEVWQHSVQTGRPYETE-LRLRQGTTGAYRWFLVRAMQHKDDQG--TTLKWFGT 363 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKN 238 K ++ + L E + + Sbjct: 364 CTDIDDQKQAEQRLKASEENWRVLAETVPQLVWTTRPDGRVDYCNQRFCEYMHAAFEQLQ 423 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + + + ++ L + E E + + ++N + + Sbjct: 424 GYGWRQFLHPEDVERVVALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAGQ 483 Query: 299 SFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLT 352 ++ + + + +D I L AN ++L +T Sbjct: 484 IVKWFGTCTDIDDQKRIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYLHMT 543 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y D + L+ P + + + L + + Sbjct: 544 GYTQEDV--RSRTLNVERTTPSEQAHLFHHALQELAARGQHTPFETEL--VCKDGSRLPV 599 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK----MEIEVMQLCSILEAT 461 + G ++ + +++ + + +L S L A Sbjct: 600 LVGGVI----FQECPRQIIGFVLDNSARKELEQRKDDFISMASHELRSPLTAM 648 Score = 78.1 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 87/274 (31%), Gaps = 22/274 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N ++ P FV + YAN S LT + + Sbjct: 1 MSNAKQTKRVTPGSRETLLHMLEILPDAVFVVDDTETIVYANASAQTLTGTTREEVCGTS 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 S P L + + V + R + L ++ ++ Sbjct: 61 LWCSA----PHLVSPSLYQAVHKAKQTREPTEV----AYVSPATNRWLHVSLSSTDEGLA 112 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E ++ + + + +LE SDG+ I+ +G++L N+ Sbjct: 113 L--------FFQEQLEPLPLQHALSQDEHMYRDLLEGFSDGVMIVTPDGLVLDINQRPLA 164 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542 E+++ P T ++ V+ +L+ ++ R +T+ + + L + Sbjct: 165 DAHLRREEVVGTPVTDLPAWSSDPVVQEHLSAAIARASRGETVLFEAKIHPRPDLSLDIL 224 Query: 543 IIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572 + I +S + DI+E K + +L Sbjct: 225 MTITSHRDASQQVEYLICAGRDITERKHAEEELR 258 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 25/282 (8%), Positives = 74/282 (26%), Gaps = 15/282 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + + SE + + W G + ++ + + ++ Sbjct: 365 TDIDDQKQAEQRLKASEENWRVLAETVP-QLVWTTRPDGRVDYCNQRFCEYMHAAFEQLQ 423 Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 G ++ + L+ + + T Y +P+ + Sbjct: 424 GYGWRQFLHPEDVERVVALRHHTLETGEPFESEHRF-RNGRTGAYHWFLARGMPVRNEAG 482 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSP-- 230 + + FG ++ K+ L + G SVE E+ + + Sbjct: 483 QIV--KWFGTCTDIDDQKRIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYL 540 Query: 231 ----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 ++++ ++ + L L + P + + + ++ Sbjct: 541 HMTGYTQEDVRSRTLNVERTTPSEQAHLFHHALQELAARGQHTPFETELVCKDGSRLPVL 600 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 Q + + S ++ ++ Sbjct: 601 VGGVIFQE---CPRQIIGFVLDNSARKELEQRKDDFISMASH 639 >gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta thermophila DSM 6192] Length = 776 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 95/361 (26%), Positives = 174/361 (48%), Gaps = 11/361 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +LE G+ +++ EG IL+ N + + E++ F + + V++ ++ Sbjct: 2 LLEVLEHVPVGMILLSPEGDILAANGRFFDMVDWTEEELDGVRFPQIIYSSDEPVVSSFI 61 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + ++ Q + + K+ + R+ DI++ K + L Sbjct: 62 ERLARGEVDQA-SILVRAARKDGSIAWWRL-WGFSRGGEVLLGAF-DITDQKVTEEHLRK 118 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 ++ A + KS FLA +SHEIRTPL I+G +E++++ R + +Y I S Sbjct: 119 EREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----DEEQRDYVQQIRFS 174 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD SKIE+GK+ + L E V +A+ +V L A++K + + Sbjct: 175 GEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEE 234 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMT 749 +PR + D ++QI +N+ +NA+ FT G ++ + V V DTG+G+ Sbjct: 235 VPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAWVAFTVEDTGIGIP 294 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F QI S R GTGLGL ++K++V+ G+ + S +G+ + P Sbjct: 295 ENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSKEGEGSSFWFLLP 354 Query: 810 L 810 L Sbjct: 355 L 355 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 44/134 (32%), Gaps = 13/134 (9%) Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + E ++ P+ + S G++ AN F + + ++++ + + + ++ Sbjct: 1 MLLEVLEHVPVGMILLSPEGDILAANGRFFDMVDWT-EEELDGVRFPQIIYSSDEPVVSS 59 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 I+ + AS + + + + + F + D Sbjct: 60 FIE----RLARGEVDQASILVRAARKDGSIAWWRLW-------GFSRGGEVLLGAFDITD 108 Query: 440 TRINKRKMEIEVMQ 453 ++ + + E + Sbjct: 109 QKVTEEHLRKEREE 122 >gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii CIP 102972] Length = 1268 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 132/672 (19%), Positives = 235/672 (34%), Gaps = 45/672 (6%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 EF G RGFG++ P + K + + ++ +F Sbjct: 97 TRDYPLEFPGARGFGLIRFI----LPDQKNAFVTKAAAERPDQHYDIRTLTPHNDSLFLI 152 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 Q P R + V + + D + + + Sbjct: 153 QYIEPENRNREAVGLDIGSESMRRDAALNAARYNEVRLTAPITLVQASKKTKQGFLILMP 212 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 + ++ DE + D + ++G P Sbjct: 213 IYQHNDVPARIDQRLQELTGWSYAPILIDEVLSSVSGLKDDVSLSIADVTNGAPQ---PF 269 Query: 348 FLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASA 398 F T + L D + + + Sbjct: 270 FSRGTNEADTPYQTQQIIWLFGRDWALNLTAKQSFVDSLPLPPNEYIYREILGSTLVIML 329 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + ++Q E A + + + + E + +I MQ +IL Sbjct: 330 IVFSLQLVTTRRAQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQ-RTIL 388 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516 + I + +GII N + KL GY +++ P L + + E+ Sbjct: 389 SSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQEL 448 Query: 517 LSLDLRQTLEKITLGS------------TKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560 + K + +R+I+ L Y +D Sbjct: 449 GETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIPIRLIVSCLLDDHQEPVGYLGIAYD 508 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E Q + +L+ AK++AE+ + KSDFLA +SHE+RTP+ AI+G ++ +N N Sbjct: 509 LTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL----N 564 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + +Y N + +L ++ND+LD SK+E+GKM + +P SL E + E L+ Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 K + I ++P ++ D ++QI LN+ NAI FT +G ++ +S S+ Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAG-EVKVSIQTESHNGDRC 683 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+GMT + + F Q +S R GTGLGL + K +V G + Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743 Query: 796 STPAKGTLIEII 807 S G+ Sbjct: 744 SEQGVGSEFSFT 755 Score = 43.1 bits (100), Expect = 0.19, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 56/214 (26%), Gaps = 26/214 (12%) Query: 36 TEKSKKENPCH---DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92 + +K E + + Q+ T + N + D Sbjct: 342 AQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQRTILSSAGYAIIASDLD 401 Query: 93 GYLKEISEELPKTIGNYAFKMIG-------MRLCDVSDI---------LHIDPNNHIGDL 136 G + + K +G A +M+G + +V+ I P + Sbjct: 402 GIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQELGETIHPGFDVFVA 461 Query: 137 LKRQNTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 K + + T G ++ + + ++ L ++E G+ G I + Sbjct: 462 -KARLGFVDITRWTYVHKNGHHIPIRLIVSCL--LDDHQEPVGYLG--IAYDLTETLQRE 516 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 517 KELAEAKELAEQANRAKSDFLANMSHELRTPMNA 550 >gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 1352 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 130/648 (20%), Positives = 231/648 (35%), Gaps = 44/648 (6%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + + S +E I ++ + +D + Sbjct: 439 RPLAFHSLATTQVDTLPDPVSYVREAIIIHELSRYGRVWQVAFRPGPTYPQRWLNEDAIW 498 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + L + + + E L A Sbjct: 499 RSVLAVGSVAIFFLFVGVRQRHEVRQRRLTRTYALLSAINKMIIREREPLRIFQAVCQIA 558 Query: 314 YFDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 G + + PI + L + + + + Sbjct: 559 VKQGGFRMAWVGLRNTTNNRLEPIAVAGKADDYLAQLDIVLTEDNPCPTAQALLRKQAI- 617 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-IPFEKANQFPE 426 + D + L R + I + E ++ E Sbjct: 618 IVNDVANDRRVAIWREAALRLGYRASASF-----PILIDGEVYATLSLYAAQPGFFDTAE 672 Query: 427 NMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 N + + R + ++ + I+ D + +NREG I+ + Sbjct: 673 VHLLNELVQDIAFAIVVRRQEAQLRASEQRNHLIVSTLPDIVFRLNREGRIIDVADGNTN 732 Query: 484 LFGYPVEDILRKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 P +IL + L S + LT + QT+ L + +E+ Sbjct: 733 SLLKPPAEILNQTLEDLSDVLSSEMISELRLALTTAFATGELQTVAYKLLF-SGQERFFE 791 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEK------------------NKLSHAKKIAEKES 582 RI + + + DI+ W+ + +LS A + Sbjct: 792 ARIKAIPTGDEA--IVLVRDITAWRVAELQLQAERDLLAQRVAERTAELSRANAELARSV 849 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +FLA +SHE+RTPL I+ SE + + GPL N R I+ SG +L ++N Sbjct: 850 RVKDEFLANMSHELRTPLNTILTLSESLLEELRGPL-NERQRASIQLIETSGRHLLTLIN 908 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD++KIE+G+M L E V++ + ++ L++ A +K+I + R LAD R Sbjct: 909 DVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIRLHCVIDAPHTRFLADPR 968 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 +KQI +N+LSNA+ FTP GG + + T T+ + V DTG+G+ +L + +PF Sbjct: 969 RLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDTGIGIAPDQLPRLFQPFV 1028 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ +S EG+GLGL L + +VD + G + STP G++ + P Sbjct: 1029 QLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVFTVTLP 1076 Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 54/196 (27%), Gaps = 12/196 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNT 142 + ++ G + ++++ ++ +++ L D+SD+L + + + L Sbjct: 714 VFRLNREGRIIDVADGNTNSLLKPPAEILNQTLEDLSDVLSSEMISELRLALTTAFATGE 773 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLD 201 G + + A+P +V L D Sbjct: 774 LQTVAYKLLFSGQERFFEARIKAIPTGDEA--------IVLVRDITAWRVAELQLQAERD 825 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + E S E + + L + +L+ + PL Sbjct: 826 LLAQRVAERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPL 885 Query: 262 LTSEESSLPEQEDFHT 277 + +S+ E Sbjct: 886 NERQRASIQLIETSGR 901 >gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1] gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina mazei Go1] Length = 716 Score = 350 bits (898), Expect = 6e-94, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 9/397 (2%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 I + + +++++ + + +L++ ++ ++ + I+ Sbjct: 321 RRLPLEGNDELYRLSREINGMLSEIELAEQELKSQEREKKVLLDSLNELAIFVDPDFKII 380 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+A + +E + N + L +I + +++ E Sbjct: 381 WANKAALEHMKIDLEKAKGMCVKTTPDINGSLFGHMQLEKIFNSGNKESGEFSLE----N 436 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 ++ I T DI+E K + L K++AE + KS+FLA +S Sbjct: 437 GTYWFVQAIPVTDDSGKIIGILGTFRDITERKAIEK-LLQEKQVAEIANRTKSEFLANMS 495 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL +IIGFS+++ +Q +G L N + ++Y N I +SG +L+++ND+LD+SK+E+G Sbjct: 496 HELRTPLNSIIGFSDLLCDQIYGKL-NEKQLKYTNNISKSGKHLLNLINDILDLSKVEAG 554 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 KM L + L + ++ SL+ A K I I + ++ I AD QI N++ Sbjct: 555 KMELDYREFELADRLNSVKSLLSPIAARKNIKIEINVNKDLTTICADEARFVQIMYNLVD 614 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI F+ + I E + V D G+G+ + K +PF Q+ + +G Sbjct: 615 NAIKFSFENNPVRIE-ARRKGEFLETTVTDIGIGIKPEDQHKLFQPFSQVAAFSSKKFQG 673 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL L K +V+ + G + S P +G+ P+ Sbjct: 674 TGLGLSLVKQIVNLHGGYVWFRSIPGEGSTFAFAIPI 710 >gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 785 Score = 350 bits (898), Expect = 7e-94, Method: Composition-based stats. Identities = 94/361 (26%), Positives = 172/361 (47%), Gaps = 11/361 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +LE G+ +++ EG IL+ N + + E++ F + + V++ ++ Sbjct: 12 LLEVLEHVPVGMILLSPEGDILAANGRFLDMVDWSEEELDGVRFPQIIYSSDEPVVSSFI 71 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 + + + K+ + R+ + DI++ K + L Sbjct: 72 DRLAR-GEAHQAGLLVRAARKDGSIAWWRL-WGFSRGAEVLLGVF-DITDQKVTEEHLRK 128 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 ++ A + KS FLA +SHEIRTPL I+G +E++++ R + +Y I S Sbjct: 129 EREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----DEEQRDYVQQIRFS 184 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LD SKIE+GK+ + L E V +A+ +V L A++K + + Sbjct: 185 GEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEE 244 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMT 749 +PR + D ++QI +N+ +NA+ FT G ++ + V V DTG+G+ Sbjct: 245 VPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAWVAFTVEDTGIGIP 304 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + + F QI S R GTGLGL ++K++V+ G+ + S +G+ + P Sbjct: 305 ENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGSSFWFLLP 364 Query: 810 L 810 L Sbjct: 365 L 365 Score = 41.9 bits (97), Expect = 0.49, Method: Composition-based stats. Identities = 16/137 (11%), Positives = 40/137 (29%), Gaps = 13/137 (9%) Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + E ++ P+ + S G++ AN FL + + S ++++ S Sbjct: 8 SSPMLLEVLEHVPVGMILLSPEGDILAANGRFLDMVDW-SEEELDGV-----RFPQIIYS 61 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + R R + L + F + Sbjct: 62 SDEPVVSSFIDRLARGEAHQAGLLVRAARKDGSIAWWRLW------GFSRGAEVLLGVFD 115 Query: 437 DVDTRINKRKMEIEVMQ 453 D ++ + + E + Sbjct: 116 ITDQKVTEEHLRKEREE 132 >gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii] gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii] Length = 1340 Score = 350 bits (898), Expect = 7e-94, Method: Composition-based stats. Identities = 132/869 (15%), Positives = 266/869 (30%), Gaps = 113/869 (13%) Query: 27 KKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS--------NTNYLDSENTFVFDP 78 +++ ++ S+ E + N N + +S F Sbjct: 93 RREAEDALRAANSRLELRVAEQ--TKNLVSANDRLTAQLVEQRRIEAELRESRERFELAA 150 Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDL 136 V W D + S +G ++ G L Sbjct: 151 EGADVG-VWEWDLQEHTAYYSSRWKSQLGCAESEIGGTIADWETRLHPDDRARALATVTL 209 Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + T + Y I ++ R GI Sbjct: 210 FQEGYTKQYRLDHRLRHHDGSYRWISSLGAGVFDEQGRMI--RMTGIHLDVTARTQAEEA 267 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS---LTEYYAHKD 251 + + ++ L E + + ++ L Sbjct: 268 RRESEDRYRTLVEQAGDIIYRTDAAGRFIYCNPTSLRVLGYLPEELLGRHYLEIVLPQCR 327 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNH 308 + + + T + + Q+ L S Sbjct: 328 SQAERFYGRQFVRKTPRTVYEVPVATKDGREVWLGQHTQLLLEGGVVSGFQVVARDITER 387 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + E E + P + G + N +F+ ++ + + I G+ Sbjct: 388 KGVEQALRESEERFSKAFHSSPAGMAISRLEDGRVLDVNEAFVRVSGFSREELI----GM 443 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 S+L ++ + + D T + E + + Sbjct: 444 SSLDVGIWVNPEDRRHLAEILTRDGFLRHLEKEFRT--KSGEVRHGLFN---VEPVCIGR 498 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS------------------------------ 456 + + + + L + Sbjct: 499 ETCVLTLVLDITRRTEAEAALRRSQSVLQAHQHALMRLTKSQHIGSGDWQSALEELMQTS 558 Query: 457 ----ILEATSDGIAIINREGIILST-----------------N-----RAVSKLFGYPVE 490 ++ S + +++R G IL N R ++L V Sbjct: 559 ALVLAVDRAS--VWLLDRTGTILDCVELYEQGQARHSRGQRLNVAEYPRYFAELLQEQVV 616 Query: 491 DIL----RKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRI 543 D + ++ ++ L ++ L + +G +E R Sbjct: 617 DAYDVAADSRASELVQPYLGALGIASLLDVPIFFGGRLAGVVCHERVGLPRE----WTRE 672 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++ ++ + + + L AK+ AE + KSDFLA +SHEIRTP+ AI Sbjct: 673 EVQFATSVGNLVALAYEAKQRLEAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAI 732 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G ++++ N EY +G+ +L ++ND+LD+SKIE+G ++L Sbjct: 733 VGMADLLSETPL----NEDQREYVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFD 788 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 L++ V A LV + A+EK + + ++P ++ D ++Q+ LN+L NAI FT G Sbjct: 789 LNDLVQRAAELVAVRASEKNLELAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDEG 848 Query: 723 GQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++++ ++ VRDTG+G+ +L + F Q+ +S GTGLGL Sbjct: 849 -EVVLRVERDPQADGPGTILFTVRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGL 907 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +++ +V+ GK ++ S +G+ Sbjct: 908 TISRRLVERMGGKMWVDSELGRGSTFSFT 936 Score = 127 bits (319), Expect = 9e-27, Method: Composition-based stats. Identities = 40/395 (10%), Positives = 105/395 (26%), Gaps = 18/395 (4%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 LD H I + + +P + + + + + A + + Sbjct: 15 LDAAVPLGHGIWLLYLLPLWLSSRLAPPAAPLRYASVCTVLLAGGLWLAPPGVDVTAVMF 74 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---------S 310 + + L+ E + L N Sbjct: 75 SRAIGTVMIWGAAYLLSQRREAEDALRAANSRLELRVAEQTKNLVSANDRLTAQLVEQRR 134 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTL 369 + A E + + + + Y + + + T Sbjct: 135 IEAELRESRERFELAAEGADVGVWEWDLQEHTAYYSSRWKSQLGCAESEIGGTIADWETR 194 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L + A + + H ++ + + ++ + ++ + Sbjct: 195 LHPDDRARALATVTLF---QEGYTKQYRLD-HRLRHHDGSYRWISSLGAGVFDEQGRMIR 250 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 GI + + + +++E D I + G + N ++ GY Sbjct: 251 MTGIHLDVTARTQAEEARRESEDRYRTLVEQAGDIIYRTDAAGRFIYCNPTSLRVLGYLP 310 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E++L + + + S + +T+ +TK+ + + L + L Sbjct: 311 EELLGRHYLEIVLPQCRSQAERFYGRQFVRKTPRTV-YEVPVATKDGREVWLGQHTQLLL 369 Query: 550 FSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + DI+E K + L +++ K Sbjct: 370 EGGVVSGFQVVARDITERKGVEQALRESEERFSKA 404 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 22/227 (9%), Positives = 59/227 (25%), Gaps = 11/227 (4%) Query: 375 LSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNRENSLAMTFIPFEKANQFPE---NMPQ 430 + VM R+ T I +A L + + E++L E Sbjct: 63 APPGVDVTAVMFSRAIGTVMIWGAAYLLSQRREAEDALRAANSRLELRVAEQTKNLVSAN 122 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + V+ R + ++ + E G+ + + + G Sbjct: 123 DRLTAQLVEQRRIEAELRESRERFELAAEGADVGVWEWDLQEHTAYYSSRWKSQLGCAES 182 Query: 491 DILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +I + L + + + + + + + + + Sbjct: 183 EIGGTIADWETRLHPDDRARALATV-TLFQEGYTKQYRLDHRLRHHDGSYRWISSLGAGV 241 Query: 549 PFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + M D++ Q + ++ D + R Sbjct: 242 FDEQGRMIRMTGIHLDVTARTQAEEARRESEDRYRTLVEQAGDIIYR 288 >gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium evestigatum Z-7303] Length = 851 Score = 350 bits (897), Expect = 7e-94, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 180/388 (46%), Gaps = 16/388 (4%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG----IILSTNRAVSKLFGYP 488 + + + +K +L I+E++ + N++ +S N FGY Sbjct: 469 VSEDLREYTKELKKSNQLRNELAKIIESSPVIAFLWNKDDSCSVNYVSNN---VDQFGYD 525 Query: 489 VEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +D L + + + + E + + + TK ++ + Sbjct: 526 PDDFLSGSLNYADIIHPDDLENVKEKTVETI-TNCLEEFNHEYRILTKNGEVRWVDERTS 584 Query: 547 KLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + D+++ KQ ++ L AK IAE + K++FLA VSHE+RTPL + Sbjct: 585 SDFDENGNVTYLRGIVIDVTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNS 644 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFSE++ +R G L N Y N + SG +L ++N +LDISKIE+GKM+ + + + Sbjct: 645 IIGFSELMLTERRGEL-NEYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNL 703 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + V++ + + A K I + T + I AD +K+ N+++NAI FTP Sbjct: 704 PIIDLVNDVSNTMHPQALNKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPER 763 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G++ + + V+DTG+G+ + KPF QI S G GLGL L K Sbjct: 764 GKVTLQVNKLD-GNIRFAVKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVK 822 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ + G+ +I S KGT I P+ Sbjct: 823 KFVEMHNGRIWIESEVNKGTAIYFTIPV 850 >gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 568 Score = 350 bits (897), Expect = 7e-94, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 162/373 (43%), Gaps = 41/373 (10%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ E ++ +I++ +DG+ + +G I+ N A K+ +E L P Sbjct: 234 LRLKQTLNDIQGEKNKIEAIIQFMTDGVVATDAKGNIIHYNEAAEKMLNVKLE--LGMPI 291 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSL 556 L + K+L++ I K Y Sbjct: 292 EGILNLEKEDAVATM--------------------NCGNKVLTVNIAPLKSNQQIEGYVY 331 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +HDI+E + + + +F+A VSHE+RTPL I + E + + Sbjct: 332 VLHDITEQHKL--------------DAMRKEFVANVSHELRTPLATIKSYVETLL---YS 374 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + ID + + +V DLL +SK++S + NL FE +L+E + + I+ + Sbjct: 375 DVDAEYLKRFLKIIDSETDRMTRLVKDLLLLSKMDSEEKNLKFEHKNLNEVIIDVINRLS 434 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 + A++K + + D ++Q+ +N+++NAI +TP G I + T + Sbjct: 435 IEAHKKNQKLIVDLQEVPRHVYIDKDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENF 493 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V D G+G+ +L + + F ++ ++ GTGLGL + K +V+ + G+ I S Sbjct: 494 ATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIES 553 Query: 797 TPAKGTLIEIIFP 809 KGT++ + P Sbjct: 554 EVGKGTIVRVKLP 566 >gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum C19] Length = 836 Score = 350 bits (897), Expect = 7e-94, Method: Composition-based stats. Identities = 150/663 (22%), Positives = 250/663 (37%), Gaps = 47/663 (7%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + ++ P+ G L + + D S R ++ Sbjct: 180 VARLDGELAPPQPNGLSLLVAGDGAILESSDERLIGLDIKDALSVSYAQLRARADSRDLI 239 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 L + + +P Q+ + + G L + Sbjct: 240 QGARDGDGFVKLASAPQGDGRIAVAGVPTQQFYSSSAAWIKGLIFVGGPLLIGALFGVLL 299 Query: 303 LSHRNHPSLS-AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360 + F E V+ + + L Y + ++ + Sbjct: 300 VFQARKTHTDNLQFQANEQRYRLAVEAARCGIWDWDLEQDLIYMSDVTGVMLGWGGGGVA 359 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 ++ + + A+ L + ++ Sbjct: 360 TTGEFVNRVAPEHRADVMKALDSARLKGA------FDVSFRVPNAEGKSIWVDVRGQSVG 413 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 A + NG+ + D R+ + + + +L + + SD + +R +L N+ Sbjct: 414 ARNQLGFLRLNGVALDVSDERMAQSRAQRAEARLLDAINSVSDAFVLWDRRHRLLMWNKT 473 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + FG + ++Q + + + E + + Sbjct: 474 FGETFGIDERFLRVGTPRELIDQVMQIAIRRH--QPAPDARDGVYEAEL----NNGRWIQ 527 Query: 541 LRIIIKKLPFSSCYSLTMHDIS----------------------------EWKQEKNKLS 572 + LT DI+ + K Sbjct: 528 IAESRTL---EGGRVLTGTDITAVKIQEEFRRRNEEELQALVQKLEQARQQQMILARKYE 584 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK AE + KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY EYA I Sbjct: 585 MAKIRAEAANHAKSEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGDILG 644 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 SG +L ++ND+LD+SKIE+GKM L EPVSLDE + + + LV+ A + + IR Sbjct: 645 SGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVHM-P 703 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +P I AD R++KQI LN+L+NAI FTP G + IS T N V + V DTG+G+ + Sbjct: 704 QLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAAMTDNN-VHIAVADTGIGIAAKD 762 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +E+ +PF QI N EGTGLGL L K++++ + G+ I ST +GT + +I P+ Sbjct: 763 MERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILPIRQ 822 Query: 813 TSH 815 T Sbjct: 823 TGQ 825 >gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 576 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 124/573 (21%), Positives = 217/573 (37%), Gaps = 51/573 (8%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANP 346 L E R + + + T D HG + N Sbjct: 2 LNPPVDEPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNV 61 Query: 347 SFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAA 396 + Y S D ++ L+ + P+ L I Sbjct: 62 GAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIED 121 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEI 449 L I+ + AM + + I ++ + + +++ Sbjct: 122 IYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRD 180 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + S++E+ D + + + +GII N+ + L G ++++ P F P+ Sbjct: 181 QQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASA 238 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567 + + +LS E E ++S D++E K+ Sbjct: 239 DAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRF 298 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + Y Sbjct: 299 ERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDA-QRRYI 357 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 358 GDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLK 417 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---------- 737 + + D R KQI N+L+NA+ F+ GG + ++ S +V Sbjct: 418 LETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILGGDWPVH 477 Query: 738 -------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + V DTG+G+ ++ K K F QI +S + EGTGLGL + K + Sbjct: 478 SFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQL 537 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + + G + S G + P+ + Sbjct: 538 TELHGGCVAVASVKDLGARFVVWLPIRPPATEE 570 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSSQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + L + + R L D Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423 Score = 45.0 bits (105), Expect = 0.057, Method: Composition-based stats. Identities = 35/407 (8%), Positives = 100/407 (24%), Gaps = 48/407 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G + R Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167 Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244 + + L E + + I R ++++ Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + SE + + + T + ++ + Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 + F+ ++ + FL ++ + Sbjct: 288 AARDVTERKRFERTLEEKNIELEHAS------------HMKSEFLATMSHELRTPLNAVI 335 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G R +S L ++ + L ++ + Sbjct: 336 G----FSEALKDGMVGDMTDAQRRYIGDIFNSSQHLLSLIND---ILDLSKVEAGMMLLE 388 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 E + + + + + ++ ++L + G+ ++R Sbjct: 389 LEAVDLDELLSNSLLIVREQAALQRIQLKLET---EADFGVLELDRR 432 >gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 687 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 109/421 (25%), Positives = 176/421 (41%), Gaps = 23/421 (5%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINR 470 + + E+ + +++ + Q ++L+A I + Sbjct: 14 LLRGEIRVAREAAEITARLVVKQFEETERLLDRF--QSANAQRQAVLDAALQMSIIATDM 71 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQ------ 523 G +L NR L GY ++++ + FL + L L + Sbjct: 72 NGKVLLFNRGAETLLGYASDEVVGQSTLLDFLLPEEVAAHADELAAELGHAVSPETLFAE 131 Query: 524 ------TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573 + K+ + + I L DI+E K + + Sbjct: 132 YVRHGLISAREWTYRRKDGTRFPVSLSITPLKGGDGGLAGTLAAAMDITERKWAEEEAHR 191 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE + KS FLA +SHE+RTPL AIIG+SE+++ + LG I I + Sbjct: 192 AKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEE-MEDLGQDDLIPDLAKIHSA 250 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L ++ND+LDISKIE+GKM+L E + V++ ++ + + + A Sbjct: 251 GRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQKNGNTLVVDGAGE 310 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I + ADL V+Q N+LSNA FT G I +ST E + V DTG+GM EL Sbjct: 311 IGAMEADLTKVRQTLFNLLSNASKFTSDG-TITLSTR-RQGEWIEFAVADTGIGMAPAEL 368 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 ++ + F Q S + GTGLGL +++ G + S P +GT + P Sbjct: 369 DRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGRGTTFTVRLPAVSA 428 Query: 814 S 814 S Sbjct: 429 S 429 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 37/412 (8%), Positives = 103/412 (25%), Gaps = 48/412 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-------LCDVSDILH---------IDPNNH 132 D +G + + +G + +++G +V+ + P Sbjct: 69 TDMNGKVLLFNRGAETLLGYASDEVVGQSTLLDFLLPEEVAAHADELAAELGHAVSPETL 128 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + ++ + T +GT P+ L+ P+ + +G + Sbjct: 129 FAEYVRHGLISAREWTYRRKDGT--RFPVSLSITPLKGGDGGLAGTLAAAM--DITERKW 184 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 R + ++ K + + ++ ++ L + D Sbjct: 185 AEEEAHRAKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEEMEDLGQDDLIPDL 244 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----- 307 L + + + + ++ + + + + + L +N Sbjct: 245 AKIHSAGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQKNGNTLV 304 Query: 308 ---HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-- 362 + A + + + S G + + ++ D Sbjct: 305 VDGAGEIGAMEADLTKVRQTLFNLLSNASKFTSDGTITLSTRRQGEWIEFAVADTGIGMA 364 Query: 363 AGGLSTLLDAPKLSDNNAIK-----------PVMLYRSDRTCI-----AASARLHTIQWN 406 L L A +D + + R I T++ Sbjct: 365 PAELDRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGRGTTFTVRLP 424 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCS 456 ++ P PE I+ + V + R ++ + + Sbjct: 425 AVSASPKAARPAGAIESGPELPLVLVIDDDAVARDLLGRFLDENGFRARFAA 476 >gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp. JE062] Length = 744 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 127/675 (18%), Positives = 255/675 (37%), Gaps = 74/675 (10%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTE------ 245 AL + L + + + I + P L++ + + Sbjct: 66 ALQRALSEALPPRATSQSRQILLTDPNGTIVASAPTRPDMEGLKITSFLGDTQPMTFFGK 125 Query: 246 --------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY--FGTLQNN 295 P + + ++ + + + T Sbjct: 126 RAGVLTINEGTKDATRATVHHLPNKLGMVAIMQPEDAIFSSWRAELSANVTIFVATSMVL 185 Query: 296 SKESFEYLSHRNHPSLSAYF-DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTK 353 + Y + + + +++ F + + + S + Sbjct: 186 LVIIYAYFAQATRAQQADGIYAATRSRIDAALNRGRCGLFDWDLSRGRVFWSASLYEMLG 245 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 +DI + +L + + K ++ R ++ + + + Sbjct: 246 MDPRNDIMGFAEIQSLTHPDDVDLYDLAKSLLDTGKSNVD-----RQWRMRHIDGSWVWL 300 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + + GI + + ++ + ++L +E S+ + + + Sbjct: 301 RVRAEVQTDAGTNEPHLIGICMDVTEQKMLAEQSRTADLRLRDAIENISEAFVLWDADNH 360 Query: 474 ILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ N KL P + P+ + + +++ + +E Sbjct: 361 LVMCNSNYRKLHQLPDHVVQAGTPYATVMSSASQPIISEPEEG---DHIDSDMESSYKVE 417 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK---------------- 576 + + L + ++ + DI+E K+++ KL +++ Sbjct: 418 MEGGRWLQVS---ERRTKDGGFVSVGTDITELKRKEEKLLESERGHMATIADLRQSRQKL 474 Query: 577 -------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 AE + KS+FLA +SHE+RTPL AIIGFSE++ FG Sbjct: 475 ELQAQQLVELTEKYADEKTRAEDANQAKSEFLANISHELRTPLNAIIGFSEIMDQGMFGD 534 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG+ +Y EY I SGN +L+++ND+LD+SKIE+G++ L E V + + V +A ++ Sbjct: 535 LGSDKYKEYCKDIHSSGNYLLNVINDILDMSKIEAGRIELSVEDVQIQQIVQDAARIISA 594 Query: 678 YANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A EK I + N+P + AD R+VKQI LN+L+N++ FTP G++ +S Sbjct: 595 TAAEKNIKV---VNENLPHMHLQADRRAVKQILLNLLANSVKFTPENGEVRVSARKV-GA 650 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L++ D G+G+ ++++ KPF Q+ N +G+GLGL +A+++ + + G I Sbjct: 651 FAELKITDNGIGIAKKDIDRLAKPFVQVENQFTKTHKGSGLGLAIARSLSELHGGYMEID 710 Query: 796 STPAKGTLIEIIFPL 810 S KGT + I PL Sbjct: 711 SEVGKGTEVTIKLPL 725 >gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 893 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 112/579 (19%), Positives = 204/579 (35%), Gaps = 24/579 (4%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 H D + S L L L + + Sbjct: 178 HADTRIPVGGIRGGISAAVPLAPHLQAGESGLRGVRLAHGGIWLAGMIGITIASAIYLRQ 237 Query: 309 PSLSAYFDEGENLTPETVDKC----PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 LS ++ P F G Y N + + + Sbjct: 238 QRLSQQAEDDLRAQEALYASLTTASPTGVFQADLHGAYCYVNDRWSAIAGLPFEQALGE- 296 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G L L ++ + + + R + E + Sbjct: 297 GWLQALHPEDRVR---VSEEWQHSVAGDCPFSLEFRFVR---PDGTVAWVYGQSAEIFDS 350 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + G + + + + + + L N + +LS + Sbjct: 351 KGGIVGYVGTITDISIRKKAEATLAEQALFLRESQSIAHLAGWKSNPDSDLLSWTDEMYH 410 Query: 484 LFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 + +P ++ I + + ++ L E + L + + R Sbjct: 411 MLDHPQDEPISHVACFRYFDPQDLPMVEKALQEAMRNGTPFKLSCRMVSARGRRFWADFR 470 Query: 543 IIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I + Y T+ DISE KQ + L AK++AE S K++ LA +SHE+RTPL Sbjct: 471 CIGRMDGPDGGYIGGTLQDISEHKQIEELLISAKEMAEATSRAKTELLATLSHELRTPLN 530 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G ++++ EY + S L +VNDLLD++ +E+ + + P Sbjct: 531 GVMGGVQLLEMTDLSA----DQEEYLQMVRTSATNELALVNDLLDLAGLEASGLKVESTP 586 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720 +L E++ AI+L + + + + TS ++ + ++ D R + QI N+L NAI FT Sbjct: 587 FNLLESIKLAITLHRSALETRGLPLVTSLPESLAQLVIGDGRRLTQIVSNLLGNAIKFTE 646 Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 GG I ++ T + +RV DTG+G+ +L++ +PF Q S R GTGL Sbjct: 647 QGG-ISLAADCTPCGGSELRLQVRVSDTGIGIAEKDLQRIFEPFVQADMSSTRRFGGTGL 705 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GL + + + G + S P +G+ + P + Sbjct: 706 GLAICHRLAERMGGSIRVDSIPGEGSSFTLELPFLAAAA 744 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 16/210 (7%), Positives = 47/210 (22%), Gaps = 12/210 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144 + D HG +++ G + +G + + + + Sbjct: 266 VFQADLHGAYCYVNDRWSAIAGLPFEQALGEGWLQALHPEDRVRVSEEWQHSVAGDCPFS 325 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +GT + + I+ G+ G + + A Sbjct: 326 LEFRFVRPDGT--VAWVYGQSAEIFDSKGGIVGY--VGTITDISIRKKAEATLAEQALFL 381 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 I D+ S P + V+ + +++ Sbjct: 382 RESQSIAHLAGWKSNPDSDLLSWTDEMYHMLDHPQDEPISHVACFRYFDPQDLPMVEKAL 441 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + + + ++ Sbjct: 442 QEAMRNG-TPFKLSCRMVSARGRRFWADFR 470 >gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1340 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 175/396 (44%), Gaps = 12/396 (3%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + + + K+ ++ IL+A + + N + + N Sbjct: 434 VKDVIDDLAIGVQLTRNLELQKKTELKVVEQLELNRQILDAIPNPMYYRNVDSEYIGVNE 493 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + + FG DI+ E T ++L E + + ++ + Sbjct: 494 SFTSFFGLFEADIIGSTPKDIFEAETAQQFEDSEAKLLENIGSLDYEARLVNADGIQRDV 553 Query: 540 SLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + + D++E KQ + +L AK+ A++ S K DFLA +SHEIR Sbjct: 554 MVYEATFFSTKGDPNGVVGLLLDVTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIR 613 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AIIG S + N NP+ Y + ID + +L I+ND+LD SK+E+GK+ Sbjct: 614 TPMNAIIGMSHLALNADL----NPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVT 669 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716 LDE + +++ + A EK + +IP ++ D + Q+ +N+ NAI Sbjct: 670 EDVDFRLDEVLDNLTNIIAVKAEEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAI 729 Query: 717 HFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT SG ++++ + VRD+G+G++ + +K K F Q S + Sbjct: 730 KFTDSG-EVVVGVKLLNKSEDGLNLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYG 788 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL ++K +V+ GK ++ S +G+ Sbjct: 789 GTGLGLTISKRLVEIMGGKIWVTSDEGQGSTFSFTL 824 >gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886] Length = 1343 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 96/407 (23%), Positives = 177/407 (43%), Gaps = 14/407 (3%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-VMQL---CSILEATSDGIAI 467 A+ + ++ + E + + + + E QL I+ A + Sbjct: 417 AVRLLSDKEMDWLSEMQEDLAVGIQLTLNAEMQMEAEQRISEQLKLNQQIINAIPNPTYF 476 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + +G + N A + G D++ K ++ ++ E+ Sbjct: 477 RDTQGAYIGVNDAFTDFLGLFYIDVVDKTPLELFAKDVANMFTEKERELFENPGSTVYNI 536 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 S + ++L++ D+++ K+ ++ L AK A + S K Sbjct: 537 ELANSHGDVRILNVYEATYYGTDGDPMGIVGLFVDVTKQKRLESDLIAAKDQATEASKAK 596 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA +SHEIRTP+ AI+G S + N + Y I+++G +L I+ND+L Sbjct: 597 GEFLANMSHEIRTPMNAILGMSHLALLTDL----NDKQRNYVGNIEKAGKSLLGIINDIL 652 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D SKIE+GK+++ E + +++ + A EK + + N+P ++ D + Sbjct: 653 DFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAKEKELELIFDIDPNLPDDLVGDPLRL 712 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFG 761 QI +N+ N++ FT SG II + T E+I + DTG+GM +L + + F Sbjct: 713 GQIIINLTGNSVKFTESGEIIIRARKVTDVNEIIEIQFDIEDTGIGMNEEQLGRLFQSFS 772 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q S + GTGLGL ++K+ V+ G+ ++ S P KG+ Sbjct: 773 QADGSITRKYGGTGLGLTISKSFVELMGGRIWVESQPGKGSTFSFTI 819 >gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio brasiliensis LMG 20546] Length = 1318 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 169/383 (44%), Gaps = 11/383 (2%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + R ++K+ + IL AT + + ++ +G L+ N S+L G P+++I Sbjct: 452 LSQNIELQRKAEQKVLEQSQLNQEILNATPNPMYCLSPQGKYLTVNAKFSELCGLPMQEI 511 Query: 493 LRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPF 550 + K Q + +++ + E L + + + + Sbjct: 512 IGKTPQQVFSQQDASQCFSETHQQLILQQGSKNYELSLLDQHLQTRDMLVCEASFNNSHG 571 Query: 551 -SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 S + D++E K + +L AK+ A+ S K +FLA +SHEIRTP+ I+G + Sbjct: 572 KVSGIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHL 631 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 N P +Y I+ S +L I+ND+LD SKIE GK+N+ SLDE Sbjct: 632 ALNTELDPA----QHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--- 725 +++ L A EK+I +P ++ D + Q+ +N+ NA+ FT G + Sbjct: 688 NLTNVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I + + V+DTG+G+ ++ F Q +S GTGLGL ++K +V Sbjct: 748 RIELLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLV 807 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 + G+ + ST G+ Sbjct: 808 ELMGGQLSVSSTLGAGSTFAFTI 830 >gi|307153439|ref|YP_003888823.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983667|gb|ADN15548.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1258 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 109/759 (14%), Positives = 236/759 (31%), Gaps = 63/759 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147 +DA+ + + + G ++ G + + + D L+ D I +LK + Y + Sbjct: 524 VDANECYRFNNGRYEQWFGIPIEQIKGKTIKETIGDKLYQDIRPRIEQVLKGEEVSYEQE 583 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 PI I +P + + GF +++ + +++F + Sbjct: 584 IFLPIGECRY---IRANYVPRFDGEGKVEGF--VALINDITDRKRIEDNLRESEERFRMM 638 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263 V E + ++ H +DV + L Sbjct: 639 ANSSPVMIWVSDETGGRTFVNQTWLNLSGRSFQEELGDGWTKSLHPEDVSRCLDTYLYAL 698 Query: 264 SEESSLPEQEDFHTINLNQYTKKQY-------FGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + N + F + + + Sbjct: 699 DAHQPFEIEYRIKAANGEYRWILERGCPRFTKFAKFSGYIGSCTDVTERQRALQALQESE 758 Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + + +D + + Y N L + + P+ Sbjct: 759 QALQQHAQMLDLANDSIIICDLDESIAYWNQGAERLYGWTKAEVQGQRINSLLKTVFPQS 818 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 L T + + ++ + N + + I Sbjct: 819 ISEIHDILKTLGYWQGEL--------TQTREDGSQIVVSSRWTLQYNSDGQPIAILAISD 870 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + + + + I E + G++++N EG L N +S + GY E++L Sbjct: 871 DITERKQVEAALLRSEERFRGIFEQAAVGMSLLNLEGRWLRVNHKLSLIVGYSPEELLEM 930 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 F +Y+ ++L+ +T +++ L+ + I + + + Sbjct: 931 TFQEITYPEDLETNLNYVRQLLA-GEIETYSMEKRYIRRDQSLIWVEITVSLVREAGHSS 989 Query: 554 --------YSLTMHDISEWKQEKNKLSHA--------------KKIAEKESSHKSDFLAR 591 + + +I E KQ + L + +K + F Sbjct: 990 QQIGQPQYFITVVEEIGERKQAERALQERAVELTSLNTVLASTTAMLQKRNQELDQFAYI 1049 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSH+++ PL AI SE I+ L + + + +++N +L+ S++ Sbjct: 1050 VSHDLKAPLRAIANLSEWIEEDLQAELPPENQQQLQLL-RQRVYRMENLINGVLEYSRV- 1107 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 G+ E S+ E +++ I + + +P + + QI N+ Sbjct: 1108 -GRKETTIETFSVLELLTDVIDSLSPPP-----TFTIEIVSPMPTLTGIKLFLGQIFSNL 1161 Query: 712 LSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + NAI+ P + G + IS V D G G+ ++ F + S + Sbjct: 1162 IGNAINHHPRADGHVWIS-AKELENFYEFAVSDDGKGIAPEHHQRIFGIFQTLEKS--EK 1218 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E TG+GL + K +V+ G + S +GT +P Sbjct: 1219 PESTGIGLAIVKKIVELQGGNITVESEVNQGTTFHFSWP 1257 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 63/523 (12%), Positives = 146/523 (27%), Gaps = 44/523 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D I+ + I A +++G + V + L +Q + Sbjct: 148 FTVDHQWGFTYINH-HCEMIFERAKQELLGQNIWQVLPEVEATVYEQFHQALAQQRSIRL 206 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204 + +++ + ++ A PI +G + V K + +F Sbjct: 207 EKSIF----SQSEQYYEIRAYPI---------PKGLAVYVLDVTEQRLANRQLKESELRF 253 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-------TEYYAHKDDVLKTE 257 L E + + SP SL + +D + Sbjct: 254 RQLAENIDQVFWISSAQKANLLYISPAYQTIWGKSCDSLYEFPRSWLDSVHPEDQQRVAK 313 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 L S + E + +++ + + + +E Sbjct: 314 ATEKLRSTQEDFKEDYRIIRPDGEIRWIAARTFFIRDENGNKYRVAGLAEDITERKRAEE 373 Query: 318 G----ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E V+ F + G + YAN +L + Y + + A Sbjct: 374 ANKESERRFRRLVESNLFGVAFANTQGKVHYANDYYLRMLGYTQQELQAGLISWERMTPA 433 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L + + + A + + F + G Sbjct: 434 EWLPLDFK--ALEELKIKGVATAFEKEYF--HKKGQRVPILIGAAFLDEPYS-KATEMIG 488 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + ++ ++ +L I +A IA ++ N + FG P+E I Sbjct: 489 FFLDLTRVKEAEKALQRREEELHLIADAAPALIAYVDANECYRFNNGRYEQWFGIPIEQI 548 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551 K + + + ++L + E+ E + + + + Sbjct: 549 KGKTIKETIGDKLYQDIRPRIEQVLKGEEVS-YEQEIFLPIGECRYIRANYVPRFDGEGK 607 Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + ++DI++ K+ ++ L +ES + +A S Sbjct: 608 VEGFVALINDITDRKRIEDNL--------RESEERFRMMANSS 642 Score = 91.2 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 35/420 (8%), Positives = 97/420 (23%), Gaps = 29/420 (6%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D N +SE F V W D G +++ G + +G Sbjct: 617 DITDRKRIEDNLRESEERFRMMANSSPV-MIWVSDETGGRTFVNQTWLNLSGRSFQEELG 675 Query: 116 MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 + + L + + Y I P +++ + Sbjct: 676 DGWTKSLHPEDVSRCLDTYLYALDAHQPF--EIEYRIKAANGEYRWILERGCPRFTKFAK 733 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK----KGHSSVEKEKYDIFSQQSP 230 FSG+ G + ++ ++ + ++ + Q Sbjct: 734 FSGY--IGSCTDVTERQRALQALQESEQALQQHAQMLDLANDSIIICDLDESIAYWNQGA 791 Query: 231 PPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + + + +Q Sbjct: 792 ERLYGWTKAEVQGQRINSLLKTVFPQSISEIHDILKTLGYWQGELTQTREDGSQIVVSSR 851 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPF-FVYSHGNLFY 343 + N+ + L+ + + + E ++ + + G Sbjct: 852 WTLQYNSDGQPIAILAISDDITERKQVEAALLRSEERFRGIFEQAAVGMSLLNLEGRWLR 911 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHT 402 N L+ Y + +E ++ + + S Sbjct: 912 VNHKLSLIVGYSPEELLE------MTFQEITYPEDLETNLNYVRQLLAGEIETYSMEKRY 965 Query: 403 IQWNRENSLAMTFIPFEKANQ-----FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 I+ ++ + + + + E + + +R ++ ++L S+ Sbjct: 966 IRRDQSLIWVEITVSLVREAGHSSQQIGQPQYFITVVEEIGERKQAERALQERAVELTSL 1025 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 7/147 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + +E+ Q+ ILE+ ++G ++ + N +F +++L + Sbjct: 123 QEKEALLEMTNTQVSQILESITEGFFTVDHQWGFTYINHHCEMIFERAKQELLGQNIWQV 182 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 L + + + L+ LEK E+ +R ++ + D Sbjct: 183 L-PEVEATVYEQFHQALAQQRSIRLEKSIFSQ--SEQYYEIRAYPIP----KGLAVYVLD 235 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSD 587 ++E + +L ++ + + + Sbjct: 236 VTEQRLANRQLKESELRFRQLAENIDQ 262 >gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta ATCC 11568] Length = 420 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 119/418 (28%), Positives = 199/418 (47%), Gaps = 41/418 (9%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G+ + + R K + + +L +E+ SD + +R G ++ N+ F +P Sbjct: 1 MGVALDVTEARRTKAQAQAAESRLRDAIESVSDAFVLFDRRGRLILWNQGFQDAFAFPKG 60 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + +P E N + + E K+ + L + ++ Sbjct: 61 VV--RPGAQKDELNRIAAEAIKAEHPSAGGRAGVREVEL----KDGRWLQM---AERFTG 111 Query: 551 SSCYSLTMHDIS--------------EWKQEKNKLSHAK--------------KIAEKES 582 + DI+ E + +L ++ AE + Sbjct: 112 DGGTVVICADITVIRRQEAERRRAADELRAMVAELEASQANLALLARKYEVAMTRAEAAN 171 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHE+RTPL AI GFSE++ + FGPLG+ RY YA I SG +L ++N Sbjct: 172 QAKSEFLANMSHELRTPLNAINGFSEIMAAEMFGPLGDRRYKGYAADIHGSGQHLLSLIN 231 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD++KIE+GK+ LH+EP++LD +EA+ L++ A E ++ + ++ I AD R Sbjct: 232 DILDMAKIEAGKLTLHYEPMALDVLCAEAVRLMRGKAQEAQLALTLDCPEDL-HIEADQR 290 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +KQ+ LN++SNA+ FTP GG + + V + V DTG+G+ +LE+ +PF Q Sbjct: 291 GLKQVLLNLISNAVKFTPEGGAVSVKVAPRDAATVRVSVVDTGIGIAAKDLERLAQPFEQ 350 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + +GTGLGL L K++++ + G I S P +GT + P T P + Sbjct: 351 VEGQHSKSTQGTGLGLALTKSLIELHGGAMTIESEPGRGTTVWFDLP---TRAPEGAV 405 >gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL 12] Length = 781 Score = 350 bits (897), Expect = 8e-94, Method: Composition-based stats. Identities = 107/376 (28%), Positives = 176/376 (46%), Gaps = 16/376 (4%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 R E E L + +D + + +R G I N + +++ GY VE+ L + L Sbjct: 243 QTLRAREREARHLAMVAANANDSVIVTDRAGHIEYVNASFTRVTGYTVEEALGRTPAELL 302 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + + + + + TK K + + I + S Sbjct: 303 NGPNTDT-EAIEAILNARRTHEPVRLELINRTKFGKDIWVETNITPMMDSDGNVVGEVAI 361 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI++ KQ + +L+ AK AE+ + K+ FLA +SHEIRTPL IIG S+V+ + Sbjct: 362 ERDITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLSGPL-- 419 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +P + I SG +L I+ND+LD+SK+E+GKM + P L + A+ LV+ Sbjct: 420 --DPEHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRP 477 Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 ANEK + + + +P IL D V+Q+ LN++ NAI FT +G + + + Sbjct: 478 LANEKGLSLSVDVS-GLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGA-VSLRAAVDTGA 535 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 V L V+DTG+G+ L++ F Q ++ GTGLGL +++ + G Sbjct: 536 APPRVTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDI 595 Query: 793 YIFSTPAKGTLIEIIF 808 + S P KG+ + F Sbjct: 596 TVTSVPGKGSCFTMEF 611 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 26/258 (10%), Positives = 64/258 (24%), Gaps = 20/258 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D G+++ ++ + G + +G ++ + + D I + + + Sbjct: 269 TDRAGHIEYVNASFTRVTGYTVEEALGRTPAELLNGPNTDTEAIEAILNARRTHEPVRLE 328 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G + + ++ P+ + G I Sbjct: 329 LINRTKFGKD--IWVETNITPMMDSDGNVVG--EVAIERDITQAKQREQELAAAKTAAEE 384 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 K ++ ++P + + V L+T +L S E Sbjct: 385 GARAKAQFLAMISH-----EIRTPLNGIIGMSDVMLSGPLDPEHRGNLQT----ILASGE 435 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L D ++ + K + + E L + + V Sbjct: 436 GLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRPLANEKGLSLSVD-----V 490 Query: 327 DKCPIPFFVYSHGNLFYA 344 P + G + Sbjct: 491 SGLPEGRILGDPGRVRQV 508 >gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 787 Score = 350 bits (897), Expect = 9e-94, Method: Composition-based stats. Identities = 103/421 (24%), Positives = 183/421 (43%), Gaps = 23/421 (5%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + E ++ + P ++ I+ +K + L S++ +D + Sbjct: 85 DEEIAVNAMKSGAYDYLVKDPERNYLKVLPLSIEKAIHHQKSAERLRLLESVVVNGNDAV 144 Query: 466 AIINREGI-------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 I G ++ NRA + GY +E+++ KP V + T + + + Sbjct: 145 LIAEHTGKSSGGYPKVIYINRAFTLATGYELEEVIEKPSDVLFGEKTSQRELVKIRKAMK 204 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574 + +++ + K+ + + I + + + DI+ K+ + L A Sbjct: 205 GN--ESVRTELICYKKDGAVFWNDVNIVPVKDENGIYTHWVSVHRDITHRKKTEEALVKA 262 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K +AE+ K FLA +SHEIRTP+ A+IG + ++ E + I +S Sbjct: 263 KILAEESMRSKERFLANMSHEIRTPMNAVIGMTNLLLRTPLSS----EQAECVDIIKQSS 318 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+ND+LD SKIESGK+ P SL + + IS L A+EK + + S + Sbjct: 319 ENLLVIINDILDFSKIESGKITFESIPFSLHSLLKKTISTFSLKASEKDLSLSLSLDASC 378 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMT 749 P ++ D + QI +N++ NA+ FT G +I++ V+ + DTG+G+ Sbjct: 379 PDSVMGDSVRLNQILVNLVGNALKFTEKG-KIVVKVQLDRRTPTHSVVLFSISDTGIGID 437 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + E + F Q N + GTGLGL + K +V+ GK ++ S G P Sbjct: 438 AEKQETIFESFTQAGNDTTRKFGGTGLGLAITKKLVELQGGKIWVKSELGVGATFSFALP 497 Query: 810 L 810 L Sbjct: 498 L 498 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 7/137 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTLWP 151 + I+ G ++I DV I +K + + + Sbjct: 159 KVIYINRAFTLATGYELEEVIEKP-SDVLFGEKTSQRELVKIRKAMKGNESVRTELICYK 217 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G D+ +P+ N ++ + + + K Sbjct: 218 KDG--AVFWNDVNIVPVKDENGIYTHW--VSVHRDITHRKKTEEALVKAKILAEESMRSK 273 Query: 212 KGHSSVEKEKYDIFSQQ 228 + + + Sbjct: 274 ERFLANMSHEIRTPMNA 290 >gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 736 Score = 350 bits (897), Expect = 9e-94, Method: Composition-based stats. Identities = 101/496 (20%), Positives = 189/496 (38%), Gaps = 26/496 (5%) Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V+ P+ + G + Y N +T Y +++ + +G L + Sbjct: 105 RLRGVVEAMPVMIHAHDASGAIVYWNRECERVTGYSALEMLGTSGKEDMLCRGKGCLLGD 164 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + T + + P + D Sbjct: 165 GK------CVNFPWAELQEVEQTFRAKDGTIRNVLLTRVSGKASVP-GWAWWMTGIDITD 217 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFT 498 R +R++ + ++ D I I++ + ++ N A LFGY E++L P Sbjct: 218 RRKTERRLAEREENYRKLFDSALDAIVIMDTQNSTVVDANPAALALFGYTREEMLGLP-- 275 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSL 556 +P E+++ K+ I + Sbjct: 276 SLALTASPKRAQESFDELMAKGTLPLTRA--RQRRKDGSTFHSEISAASFESFGRKLVCV 333 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRF 615 D+S K +L +A + A + + KS+FLA +SHEIRTP+ +IG +++ + ++R Sbjct: 334 FFRDVSSEVATKLRLENAVRQARRSNRVKSEFLANMSHEIRTPIAGVIGTAKMALASERR 393 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G E I+ + +L IVND+LD+SKIE+ + + S + V + Sbjct: 394 GN-----QAEQLRRIENAARSLLSIVNDILDMSKIEAKGLEFRAKDFSPEWVVCACVEEF 448 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K + + ++P + D + Q+ N++ N++ FT G I IS Sbjct: 449 TALAQAKGLDLAAYVEPDVPACMRGDPDRLLQVLRNLVGNSLKFTERG-HITISVRQPEK 507 Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E + V+DTG+G+ + KPF Q+ + R +GTGLGL +++ +V+ G Sbjct: 508 GETGLLYFSVKDTGIGIPKNRQKDLFKPFSQLDTTYAKRHQGTGLGLSISRRLVERMGGD 567 Query: 792 FYIFSTPAKGTLIEII 807 ++ S +G+ Sbjct: 568 IWVESERGQGSEFCFT 583 Score = 38.9 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 61/239 (25%), Gaps = 8/239 (3%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + + + G +M+G+ ++ +L+ + + + Sbjct: 252 TVVDANPAALALFGYTREEMLGLPSLALTASPK-RAQESFDELMAKGTLPLTRARQRRKD 310 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G+ + I A+ + R FR + R++N R + K L + Sbjct: 311 GSTFHSEISAASFESFGRKLVCVFFRDVSSEVATKLRLENAVRQARRSNRVKSEFLANMS 370 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + + E A + + + E L Sbjct: 371 HEIRTPIAGVIGTAKMALASERRGNQAEQLRRIENAARSLLSIVNDILDMSKIEAKGL-- 428 Query: 272 QEDFHTINLNQYTKKQY-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 +F + + ++ L+ P + A + + + Sbjct: 429 --EFRAKDFSPEWVVCACVEEFTALAQAKGLDLAAYVEPDVPACMRGDPDRLLQVLRNL 485 >gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str. 301020] Length = 576 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 121/529 (22%), Positives = 211/529 (39%), Gaps = 50/529 (9%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 +V+ A +RI ++ + + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463 Query: 732 ---------------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 FAQAGVIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 EGTGLGL + K + + + G + S G + P+ P +C Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L + + + L + + R L D G Sbjct: 374 ILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431 Score = 45.0 bits (105), Expect = 0.055, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312 >gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X514] gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X561] gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter sp. X513] Length = 456 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L +IL++ +G+ + IL N A K+ +D++ + Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRHILEI 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S ++ + ++ + K K+ + I+ + + + L + Sbjct: 161 VR---NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G + Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 259 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP+ + + + ID + ++ND+L +S+IE+ K E + LD + + + ++ Sbjct: 260 NPQARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKV 319 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I ++ I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 320 ARNKNITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G+G++ + + + F ++ S+ + GTGLGL + K +V++ G+ ++ S Sbjct: 379 ITVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 438 Query: 799 AKGTLIEIIF 808 +GT I F Sbjct: 439 GRGTKFIIKF 448 >gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121] gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121] Length = 1317 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 131/668 (19%), Positives = 239/668 (35%), Gaps = 57/668 (8%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLT 244 + R + ++ K S L + + S++ E I + + + Sbjct: 341 VTSLSRRRQVVRQSIKLDSILSSVNEAIISLDTEDCIISWNPAAALLFGYSEEEALGRFF 400 Query: 245 EYYAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN----NSKE 298 DD ++ +S + + + + + + Sbjct: 401 PGLVLPDDKWAEYDMGKDFISKGQSYNILDTQRRHKEGHLLSLGLHVTPMLDKNKRSMGV 460 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVD----------KCPIPFF---------VYSHG 339 + + + E V G Sbjct: 461 TIAAVDISHVKRTEKALQRSNEELEEVVKLRTEQMKSVLNLQSGILNSTAFAVIATDLEG 520 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----------------P 383 + + NP+ L ++ D I +L A +L D Sbjct: 521 LVTFINPATKYLFQFNEADVIAKP---DSLFFADELGDAYPPLYQQGSQLARYMKRTLIE 577 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L +R + + + A + N E+M I + + Sbjct: 578 QELIDRNRQQVNHEDQERIFIRKDLSRFAGSLSVSLIHNDQGESMGYLAIVTDLTRQKYL 637 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + ++E + E+TSD + ++ G ++ N+A G + +L + Sbjct: 638 EFEWQLEKVS----TESTSDAVLWMDDVGAMIKVNQAACDALGVKSQVLLGRKLFDIFPD 693 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 ++ S Y E+ + EE +S+ + L L DI++ Sbjct: 694 HSYSWWRPYQIELQQYKKVW-FDTSFHNVHGEEVHVSVNANLIYLDGKEYVHLVARDIND 752 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +++++L+ AK+ A+ S KS FLA +SHE+RTP+ A+IG E++K P+ Sbjct: 753 RLKKEHELATAKERADIASEAKSHFLANMSHELRTPMNAVIGLLELVKKTSLSPV----Q 808 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ + + + +L I+ND+LD SKIE+ M + L + E ++ K Sbjct: 809 SDFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDEMALILSASLTTKD 868 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + +N+P I D +KQI LN+ SNAI FT G ++IS S E+ + V Sbjct: 869 IEVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQKG-HVLISIKMLSENEISMCVE 927 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D+G+GM +LE F Q S R GTGLGL + K +++ G + S KGT Sbjct: 928 DSGIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMDGSIRVESHLGKGT 987 Query: 803 LIEIIFPL 810 + PL Sbjct: 988 SFHVQLPL 995 Score = 87.0 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 87/245 (35%), Gaps = 9/245 (3%) Query: 348 FLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 L LT+ + I L + ++ + + + Sbjct: 253 ALDLTQNELALTIRDVSNLDNQIFFQQDVTQRSEYHANTNLKFYNRHWVIELTASKQFID 312 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + F + + V + +R++ + ++L SIL + ++ I Sbjct: 313 D---MHLVDERSIQRTVFAGALLLAALAFFLVTSLSRRRQVVRQSIKLDSILSSVNEAII 369 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++ E I+S N A + LFGY E+ L + F + + + +S + Sbjct: 370 SLDTEDCIISWNPAAALLFGYSEEEALGRFFPGLVLPDDKWAEYDMGKDFISKGQSYNI- 428 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 T KE LLSL + + + + ++ DIS K+ + L + + E+ Sbjct: 429 LDTQRRHKEGHLLSLGLHVTPMLDKNKRSMGVTIAAVDISHVKRTEKALQRSNEELEEVV 488 Query: 583 SHKSD 587 +++ Sbjct: 489 KLRTE 493 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 38/420 (9%), Positives = 99/420 (23%), Gaps = 55/420 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK- 146 +D + + G + +G + + D + + ++ Sbjct: 371 LDTEDCIISWNPAAALLFGYSEEEALGRFFPGLVLPDDKWAEYDMGKDFISKGQSYNILD 430 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKF 204 T EG + + L P+ +N+ G I HV R + + + L++ Sbjct: 431 TQRRHKEGHL--LSLGLHVTPMLDKNKRSMGVTIAAVDISHVKRTEKALQRSNEELEEVV 488 Query: 205 SHLHEIKKGHS------------------------SVEKEKYDIFSQQSPPPHLRM---- 236 E K + +F + Sbjct: 489 KLRTEQMKSVLNLQSGILNSTAFAVIATDLEGLVTFINPATKYLFQFNEADVIAKPDSLF 548 Query: 237 -KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE---------DFHTINLNQYTKK 286 +++ + L L +E ++ F +L+++ Sbjct: 549 FADELGDAYPPLYQQGSQLARYMKRTLIEQELIDRNRQQVNHEDQERIFIRKDLSRFAGS 608 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYAN 345 + N+ ES YL+ + Y + L + + ++ G + N Sbjct: 609 LSVSLIHNDQGESMGYLAIVTDLTRQKYLEFEWQLEKVSTESTSDAVLWMDDVGAMIKVN 668 Query: 346 PSFLLLTKYKSVDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + KS + + + Sbjct: 669 QAACDALGVKSQVLLGRKLFDIFPDHSYSWWRPYQIELQQYKKVWFDTSFHNVHGEEVHV 728 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 S + I + + + + + + + + + +L + Sbjct: 729 SVNANLIYLDGKEYVHLVARDINDRLKKEHELATAKERADIASEAKSHF-LANMSHELRT 787 >gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42] gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42] Length = 579 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 172/392 (43%), Gaps = 30/392 (7%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 N + + ++ + +++ +L +++E G+ +I+ G I NR+ Sbjct: 208 RRSDRLGRAMNSLAVDLMEMTRTQ---DMQRDRLLTVIENIGSGLILIDGRGFINLVNRS 264 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEK 537 +K F E +LR+ + E + + LR + + Sbjct: 265 YTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGV 324 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L HD++E K+ + + DF+A VSHE++ Sbjct: 325 PI-----MGPDDEWKGIVLVFHDMTEIKKLE--------------QMRKDFVANVSHELK 365 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 TP+T+I GF+E + + G + + + + ++ + I + + +V DLLD+SK+E Sbjct: 366 TPITSIKGFTETLLD---GAMKDEKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFT 422 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + E + + E +L++ A EK I + + D +KQ+ LN+ +NA+ Sbjct: 423 MRVESFDAAKILHEIEALLRHKAEEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNAL 482 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +TP G + IS V ++V DTG+G+ E+ + + F ++ + GTGL Sbjct: 483 TYTPEKGTVGISVHVKET-VVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGL 541 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GL + K +++A+ GK + S P +GT+ + Sbjct: 542 GLAIVKHLIEAHEGKIEVTSEPGQGTVFTVTL 573 >gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3] gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3] Length = 934 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 107/552 (19%), Positives = 196/552 (35%), Gaps = 21/552 (3%) Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 + I + Q S ++ E T + + Sbjct: 89 PNNLSVIARALLSDPQIVLNANRLSASVASLVADLETILRLKISQEYSKHTINLLQQELW 148 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----PVMLY 387 S L + L + ++ + +L ++ + Sbjct: 149 QEMPNSDDRLHMIGQTMELAMSTQVSPELASSNSFKSLRIHSQILARIKQDISSKTQQVL 208 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-- 445 + + ++ F E + RI + Sbjct: 209 NAKVREDINEQEFFWLSVVEGTKQSLLVSCMLLVVIFSLYYRVQVQEQSRKERRILESLV 268 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQN 504 E E L + E DG I +++G + N+ + + GY + D+ K P ++ Q Sbjct: 269 ASEQEKEMLALVAEHAQDGFIITDKQGFVTWLNKGFTTISGYTLADLEGKKPGSILQGQE 328 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 T ++ + + + K+ + + I + S + D Sbjct: 329 TEKGDVDKISRAIKAGKS--IASEVVNYHKDGTPYWVDMTISAVTDSDGDISNFIAVERD 386 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + KQ ++ L+ A A+ + KS FLA +SHE+RTPL I+G +++I+ L N Sbjct: 387 TTARKQMQDDLAKAVIKADISNKAKSTFLATMSHELRTPLNGILGMAQIIE----PNLDN 442 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P + + + SGN + ++ND+LD SK+E GK+ L E + + + + Sbjct: 443 PEHRKQIQILLESGNHLTSLLNDILDFSKVEQGKLELESELFRFNSVLEPISKTYEPICD 502 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEE 736 EK I + + + D ++Q+ N+LSNA+ FT G ++ + Sbjct: 503 EKNIQLIVQNEIDEKQCFKGDKSRIRQVIYNLLSNAVKFTEQGSVSLLFKQGVNAEGQQG 562 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + DTG+G+ L PF Q +S + GTGLGL + K +V+ G I S Sbjct: 563 IEATIIDTGIGIRPERLASIFDPFVQAESSTTRQYGGTGLGLSIVKQLVELMGGTISITS 622 Query: 797 TPAKGTLIEIIF 808 KGT I Sbjct: 623 QVDKGTRFAIFL 634 >gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] Length = 842 Score = 349 bits (896), Expect = 9e-94, Method: Composition-based stats. Identities = 143/718 (19%), Positives = 265/718 (36%), Gaps = 52/718 (7%) Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + G+T G + + A R R F G V Sbjct: 136 DGADWKAAALAAGASGRTNWVGSVGETGRLYV--ATTTSLDRARAFVIASGDASRLVADP 193 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + D K + +E + + + ++ + + Sbjct: 194 EKGESGALALPDGKLIAARGRGVQGAGALREAFALSIEDLGDGPAAVRGQAADGALLDVA 253 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 V + + + S+ + G + R Sbjct: 254 VRPVAQGALLAVAAAPTRSVANLDRQVMEGAFSLLVPLGVGIALALLL----MIQSRKAE 309 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 F + E V+ + + +G+ Y + + + + L Sbjct: 310 VAHREFIDSERRFRLAVEAARCGIWEWDLNGDQVYLSDVTGAMFGWGGGGVVSGQDLLER 369 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + ++ + + S R+ + + + Sbjct: 370 ISIDHR----ERVRQALANAAMYGAFDVSFRVPASEQGARSLWIDARGQGFGKPGSEGHA 425 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 G+ + + RI + + + +L +E+ S+ + +R+G +L NR +F Sbjct: 426 RIIGVALDVTEERIAQARAQAAENRLRDAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLE 485 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + + KP E N + + + E + + + + + ++ Sbjct: 486 PKIL--KPGAARAEVNRFAALAIKQDHPAPDGAKGVREAEMM----DGRWIQIS---ERR 536 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKI----------------------------AEK 580 +T DI+ K ++ ++ AE Sbjct: 537 TAEGGLVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAES 596 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG +L + Sbjct: 597 ANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLAL 656 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +ND+LD+SKIE+GKMNL FE + L++ +A+ LV+ A + + F +P I AD Sbjct: 657 INDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEAD 715 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAM 757 R+VKQ+ LN+LSNAI FTP G + + + + + + V DTG+G+ +L + Sbjct: 716 YRAVKQVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLARLA 775 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 KPF Q+ + +GTGLGL L K+++ + G + STP +GT + P+ + Sbjct: 776 KPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVRHSDQ 833 >gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str. Fusaro] Length = 729 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 103/407 (25%), Positives = 196/407 (48%), Gaps = 16/407 (3%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + I + + +++++ + + +L++ ++ + +N + I+ Sbjct: 322 RRLPLKDDDELYRLSKEINGMLNEIDLAQQELKAQEREKKVLLDSLNELVIFVNPQLYII 381 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+A + ++ + L+ + P + L ++ +++ E S K+ Sbjct: 382 WANKAALEFMKIDLQKAVGLRLNDTLDISIPLSYSLDLEQVFMTGNKKSGEF----SGKD 437 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 +++ ++ I DI+E K + L K+IAE + KS+FLA +S Sbjct: 438 DRVWIVQAIPVTEEGGKIIGVLEMCRDITESKAAET-LLQEKQIAEAANRTKSEFLANMS 496 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL +IIGF++++ Q +G L N R ++ I +SG +L+++N +LD+SKIE+G Sbjct: 497 HELRTPLNSIIGFADLLYEQVYGEL-NERQLKSVGNISKSGKHLLNLINGILDLSKIEAG 555 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 KM L ++ L ++ +L+ A+ K + I S +++ I AD QI N++ Sbjct: 556 KMELSYKQFELASKLNIIKNLLSPIADRKNVQIEISIDSSLSSIYADEARFVQIMYNLVD 615 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI F+ G + I + V + V DTG+G+ + K KPF Q+ + + +G Sbjct: 616 NAIKFSYENGLVKIE-ARKKGDLVEITVTDTGIGIKPEDQSKLFKPFSQVDSFLSKQFQG 674 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 TGLGL L K +V + G + S P +G+ + P+ +CI Sbjct: 675 TGLGLSLVKQIVQLHGGDIWFRSKPGEGSTFAFVIPI-------ECI 714 >gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 571 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 41/370 (11%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ E ++ +I++ DG+ + +G I+ N A K+ + L P Sbjct: 237 KETLNDIQGEKNKIEAIIKFMKDGVVAADAKGNIIHYNEAAEKMLNKKLS--LGMPVEEV 294 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMH 559 L T + ++L + K+ Y MH Sbjct: 295 LPLKEAENPIPM--------------------TCDNRVLMINAASVKINNQVEGYVYVMH 334 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E + + +F+A VSHE+RTPL I + E + + + Sbjct: 335 DITEQHKL--------------DQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVD 377 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ I+ + + +V DLL +SK++S + +L EP +E V ++ + + A Sbjct: 378 TEYSKKFLRIIETETDRMTRLVKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEA 437 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 +K + + + + ++ D V+Q+A+NI++NAI +TP GG I IST + V Sbjct: 438 TKKGHNVILNLSETLQKVNVDKDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTF 496 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G+G+ +L + + F ++ ++ GTGLGL + K +V+ + GK I S Sbjct: 497 TVKDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELG 556 Query: 800 KGTLIEIIFP 809 KGT++ + P Sbjct: 557 KGTVVTVQLP 566 >gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 1353 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 209/611 (34%), Gaps = 44/611 (7%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++ T H +VL+T + E + Sbjct: 261 RQLIYQTPENDHDQEVLQTYAFEREIYGRVWRMEVGAHPAFIAALDPVPAGRVFIIGTLV 320 Query: 298 ESFEYLSHRNHPSLSAYFDE---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353 + + G+ V+ G + N + + Sbjct: 321 SLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFG 380 Query: 354 YKSVDDIEIAGGL-----------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 Y + + LL+ + + I + Sbjct: 381 YDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGERGPTLETRRLHKNGQLIDVTITCSF 440 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEAT 461 I+ L + + ++ + + ++ L +L+A+ Sbjct: 441 IRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAELSRVAGLLQGVLDAS 500 Query: 462 SD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 S+ I + +G I NR L GY ++L Sbjct: 501 SEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPGVFHLPEEVAARSAELSREYGT 560 Query: 521 LRQTLE-------------KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 L + ++ + K+ + + +II + + + DI+E Sbjct: 561 LIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITE 620 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +L AK AE ++ KS FLA +SHEIRTP+ A+IG S ++ N N + Sbjct: 621 RLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQ 676 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + + +G +L I+ND+LDI+KIE+G+M L P S + + E L A EK Sbjct: 677 RQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKG 736 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738 + + ++P +++ D V QI +N++ NA+ FT GG + ++ + + + Sbjct: 737 LRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGG-VDVTVSREDDHADTCCLR 795 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V+DTG G+ L + PF Q S R GTGLGL + + + + G+ + S Sbjct: 796 FSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESEL 855 Query: 799 AKGTLIEIIFP 809 G+ + P Sbjct: 856 GTGSEFWVELP 866 Score = 117 bits (294), Expect = 6e-24, Method: Composition-based stats. Identities = 67/436 (15%), Positives = 135/436 (30%), Gaps = 48/436 (11%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + +E+ G RGFG + ++ + + + S + D F Q Sbjct: 92 RNIEKEYPGARGFGFIRRVAASDEAEFVRRVREDG--RPDFSLSRLSGPGTRQGDRFIIQ 149 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 P R + H+ D L++ + L + +D L Sbjct: 150 FIDPLDRNVQALGLDITSEEHRRDAALQAMRSGAATLSAPITLLQDNDDHMRAFLFLLPV 209 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 + ++ + P + + L+ N Sbjct: 210 YSTPEIPTDIAQRETSLIGWTYAPLAMREVMSNLDPLNHRLHL-----------KLYDVN 258 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 L+ + D D ++ R R+ ++ Sbjct: 259 EGRQLIYQTPEND-----------------HDQEVLQTYAFER------EIYGRVWRMEV 295 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEAT 461 + P F + + V T + R+ + + +L +I+E + Sbjct: 296 GAHPAFIAALDPVPAGRVFIIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENS 355 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 SD I +G I++ NRA ++FGY ++L +P L + L E ++ Sbjct: 356 SDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGE 415 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKI 577 R T K +L+ + I + + L MHDI++ K+ + L Sbjct: 416 RGP-TLETRRLHKNGQLIDVTITCSFIRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQ 474 Query: 578 AEKESSHKSDFLARVS 593 E++ S ++ L+RV+ Sbjct: 475 LEQQVSERTAELSRVA 490 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 32/363 (8%), Positives = 90/363 (24%), Gaps = 32/363 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149 G + + + G +++G L + + + + + + + +T Sbjct: 365 DGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGERGPTLETRR 424 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------- 199 G + + + I + G ++H Sbjct: 425 LHKNG--QLIDVTITCSFIRETDGTLLGAAK--MMHDITDRKRVERYLMEFNAQLEQQVS 480 Query: 200 ------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 L E+ + + + + +S Sbjct: 481 ERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPGV 540 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 H + + L + + + F + ++ + + ++ + + Sbjct: 541 FHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIITP 600 Query: 308 HPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIA 363 + + + ++ + + AN + FL ++ + Sbjct: 601 IRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAV 660 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G+S LL L+D L + RT + + I + + PF Sbjct: 661 IGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQL 720 Query: 424 FPE 426 E Sbjct: 721 LDE 723 >gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.] Length = 1266 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 182/385 (47%), Gaps = 17/385 (4%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 E + + + + ++ + T + ++ +GI+LS N A + G DI+ K Sbjct: 366 ELNERKRLENIQKESELKFKVLYNHTFQLMGLMAPDGIMLSVNEAALESTGTKESDIVEK 425 Query: 496 PFTVFLEQNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 F + + + + ++ Q + T K L + IK + S Sbjct: 426 LFWDAPWFSYSEEVKEMVRDSVIKAAAGQFIRFETQIHLKNNILQDIDYSIKPVEDESGN 485 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DI+ K+ + +L AK+ AE + K +FLA +SHEIRTP+ II SE++ Sbjct: 486 AIMLIAEGRDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELL 545 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 N+ + + Y I S +L+I+ND+LD+SKIE+GK++L +++ + + Sbjct: 546 SNEDI----SDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDK 601 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 +++ ++K I + IPR + D + QI +N++SNA+ FT GG II+ Sbjct: 602 LVNMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGV 661 Query: 730 -----THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + EV LR ++DTG+G+ + +EK +PF Q S GTGLGL + K Sbjct: 662 KELENRSAESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICK 721 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S P KG+ Sbjct: 722 QLVEMMGGEIRVESEPEKGSTFSFT 746 >gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 812 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 127/645 (19%), Positives = 241/645 (37%), Gaps = 52/645 (8%) Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 ++ +D + V L + Sbjct: 127 GLDRQEGVQLALDGSNDAAFDAVTPAQVQALNDTGEAVIELPLPDGRMALAAQRTLDTAS 186 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S + + + D Sbjct: 187 GSVIVMQAQNAASWRSDTALQITLSATTGFVVLILGFAFHWQSTRARESDLINDAVRGRI 246 Query: 323 PETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +++ + + G + + + S + +S +D+ G ++ L+ + + Sbjct: 247 DTALNRGRCGLWDWDLSRGRI-FWSQSMFTMLGLESRNDLLAFGEVNALVHSEDIDLMAI 305 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 ++ + ++ + + + GI + + Sbjct: 306 ADQLL----SGQISHID-QTFRMRHADGHWIWLCVRCELTEAGSNGGCHLIGIALDITEQ 360 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV 499 + + ++L +E + + + E ++ N +L P + P+ Sbjct: 361 KSLAARSVEADLRLRDAIETIPEAFVLWDSENRLVLCNSHFQRLHKLPDSAVTAGTPYET 420 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 +E + + ++ + + L++ ++ + Sbjct: 421 VIEVGHMPEIRA---RVADTEISAPGSRTFEAQLNDGSWLNIS---ERRTKDGGFVSVGT 474 Query: 560 DISEWKQEKNKLSHA-----------------------------------KKIAEKESSH 584 DI++ K+ + +L K+ AE+ + Sbjct: 475 DITQIKRHEQRLVDNDLRLTAYVVDLKRSQAALEQQARELADLAQKYAEEKRRAEEANQT 534 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHE+RTPL AIIGFSEV+ FGPLG+ RY EY I SGN +LD++ND+ Sbjct: 535 KSKFLANMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEYCQDILTSGNYLLDVINDV 594 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704 LD+SKIE+G+M L E + L E VSE+ + +A+ KR+ + + IP I+AD R++ Sbjct: 595 LDMSKIEAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTLDSRIDGAIP-IVADRRAM 653 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 KQI +N+LSNA+ FTP GG+I++ + + V++ + DTG+G+ L + PF Q+ Sbjct: 654 KQILVNLLSNAVKFTPDGGRIVVRSRII-GDRVMVTIADTGIGIPKEALARLGCPFEQVE 712 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + G+GLGL +AK++V + G + S GT++ I P Sbjct: 713 SQLTKSYHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRINLP 757 >gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta smaragdinae DSM 11293] Length = 1052 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 124/636 (19%), Positives = 230/636 (36%), Gaps = 37/636 (5%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEY 246 R+ R L + + E ++E ++ + + T Sbjct: 337 RLSKTIRQKTLSLIEFKRAVREAGHAIYMTDREGIITYTNPAFERITGYSWEEAEGKTPN 396 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + ++ L S + +E+ + Y Q + ++ +++ Sbjct: 397 ILNSGMMPESYFARLWESILAGELWEEEIINRKQDGTIYYAHQTIAPIFSDFGMVISFVA 456 Query: 305 HRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVD 358 +N E E L + + + + N + + Y D Sbjct: 457 IQNDVTQQRESERRLWESETLYRNLFETAADSILLINPETLGISECNQATIESLGYG-KD 515 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 +I+ L + P + D+ T + N Sbjct: 516 EIKQLSYLD--IQPPDHQQRVKELVQGISEFDQATFDTQHTTKTGELREVNVHMTLLN-- 571 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + I + + R +R ++ + + E +SD I+ GI L + Sbjct: 572 -----LDQRKLLLAIMHDVTERRQAERTIQQSERKYRMLAENSSDMISQHAPGGIYLYVS 626 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A +L GY E++L + + + L + + K+ Sbjct: 627 PACIRLLGYEQEELLGRQVEEIIHPEDIERVIEIGKNHLGSPSERITTLVYRIQKKDGSY 686 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + S DISE + L E+ + KS FLA +SHEIRT Sbjct: 687 TWFE-THSRRTDSQEIIAISRDISERIAMERGL-------EEANKAKSMFLANMSHEIRT 738 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL A++GF+++I +P+ EYA ID SG +L ++ D+LD SK+E+G + + Sbjct: 739 PLNAVLGFNDLIARN----TSDPKLKEYAAQIDLSGKNLLTLIGDILDFSKVEAGGVQFN 794 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 ++ S V E I+L ++ A ++ I + T IP +I D V+QI +N++SNA+ Sbjct: 795 YDFFSPHHLVREIIALFEMEAKKRGIDLITKERTPIPKQIKLDEDRVRQILINLVSNALK 854 Query: 718 FTPSGGQ-IIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G + I + ++ + V DTG+G+ E + F Q + Sbjct: 855 FTEKGSVCLEIHAAYIKQKDQRCNLTFSVIDTGIGIPEKEQHVIFEAFRQQEGQSTRKYG 914 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL ++K + + G + S G+ + F Sbjct: 915 GTGLGLAISKNLAEGMEGSIDVKSNVGSGSTFTLSF 950 Score = 84.7 bits (208), Expect = 6e-14, Method: Composition-based stats. Identities = 39/387 (10%), Positives = 99/387 (25%), Gaps = 26/387 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144 + D G + + + G + G ++ + + + + + W Sbjct: 363 IYMTDREGIITYTNPAFERITGYSWEEAEGKTPNILNSGMMPESYFARLWESILAGELWE 422 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +GT Y +A PI+S F I + + + + Sbjct: 423 EEIINRKQDGTIYYAHQTIA--PIFSDFGMVISF--VAIQNDVTQQRESERRLWESETLY 478 Query: 205 SHLHEIKKGHSSVEKEKYDIFS------QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +L E + + S +S ++S L +K Sbjct: 479 RNLFETAADSILLINPETLGISECNQATIESLGYGKDEIKQLSYLDIQPPDHQQRVKELV 538 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + ++++ Q T L + L + Sbjct: 539 QGISEFDQATFDTQHTTKTGELREVNVHMTLLNLDQRKLLLAIMHDVTERRQAERTIQQS 598 Query: 319 ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + ++ G + Y +P+ + L Y+ + + + Sbjct: 599 ERKYRMLAENSSDMISQHAPGGIYLYVSPACIRLLGYEQEELLGRQ-------VEEIIHP 651 Query: 378 NNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + + ++ + ++ IQ + +Q I Sbjct: 652 EDIERVIEIGKNHLGSPSERITTLVYRIQKKDGSYTWFETHSRRTDSQE-----IIAISR 706 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATS 462 + + +R +E L S Sbjct: 707 DISERIAMERGLEEANKAKSMFLANMS 733 >gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1492 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 119/656 (18%), Positives = 223/656 (33%), Gaps = 43/656 (6%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 L + + + L G +++ Y F+ + V + ++ Sbjct: 708 ELVQLNEDIDNLLRSTNVGVVFLDRNLYIRKFTPAAAAVVNLQAGDVDRPIANFTNRLVE 767 Query: 254 LKTEKYPLLTSEESSLPEQED--FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + SL E+E T Y + +L + Sbjct: 768 TSLDALAREVIAHESLIEKEVCNADTKESLLLRAYPYIKADGELDGVTLTFLEVTELKRV 827 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLL 370 A +E + P+ F ++ N F+ L +D + I + + Sbjct: 828 QAKLEESNAVLETVYATSPVGFALHDE------NLRFVRLNQMLAEIDQLSIEEHIGRTM 881 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--SLAMTFIPFEKANQFPENM 428 S+ + + T E F + Sbjct: 882 AEILPSEIGEQAMALHRQVLETGNPVLDYEFEGALPTEPDAYRHWLASYFPVDLKNGRRW 941 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGY 487 + E + + +++ + E+ I I + N +VSK+ GY Sbjct: 942 -VAAVVNEITAIKKVQTELQDSRNFAQRLSESNPGIIYIYDIPSMSATYLNSSVSKILGY 1000 Query: 488 PVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 ++ + S + Y + + LE K + + Sbjct: 1001 TPREVRDMGDHIIQRLVHPKDFSKVIQYYQRFI-HNHTDVLETELQIKHKNGSWRWIALR 1059 Query: 545 IKKLPFS-----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH----------KSDFL 589 DI+ K + +L+ K+ E + KS+FL Sbjct: 1060 SVAFDVDSAGRVQQVLGLATDITGRKTTERRLTKQKQTLENAIAAAQAADSANQAKSEFL 1119 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ I+G S++++ N R + R+G +L ++ND+LD+SK Sbjct: 1120 ANMSHEIRTPMNLILGTSQLLERTGL----NERQQNLLEVLQRNGQTLLTLINDVLDLSK 1175 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 +E+ ++++ +P L + + A EK + I + +P ++ D ++QI Sbjct: 1176 LEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFRLQQIL 1235 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIP 764 N+L NA+ FT G I + + + V V DTGVG+ E +PF Q Sbjct: 1236 HNLLGNAVKFTAKGS-IQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEPFIQAD 1294 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 NS + GTGLGL + + +V+ G+ + S P +G+ + PL D + Sbjct: 1295 NSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVPLEKAGDSEDVL 1350 Score = 44.6 bits (104), Expect = 0.077, Method: Composition-based stats. Identities = 19/251 (7%), Positives = 60/251 (23%), Gaps = 17/251 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG--K 146 D + +++ L + + IG + ++ + + +L+ N Sbjct: 853 DENLRFVRLNQMLAEIDQLSIEEHIGRTMAEILPSEIGEQAMALHRQVLETGNPVLDYEF 912 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 P E + + P+ +N +V+ + + Sbjct: 913 EGALPTEPDAYRHWL-ASYFPVDLKNGRRWVA---AVVNEITAIKKVQTELQDSRNFAQR 968 Query: 207 LHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTE 257 L E G + + +V + ++ + Sbjct: 969 LSESNPGIIYIYDIPSMSATYLNSSVSKILGYTPREVRDMGDHIIQRLVHPKDFSKVIQY 1028 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFD 316 + + L + N + +++ + L + + Sbjct: 1029 YQRFIHNHTDVLETELQIKHKNGSWRWIALRSVAFDVDSAGRVQQVLGLATDITGRKTTE 1088 Query: 317 EGENLTPETVD 327 +T++ Sbjct: 1089 RRLTKQKQTLE 1099 >gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator [Acaryochloris marina MBIC11017] Length = 768 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 101/526 (19%), Positives = 193/526 (36%), Gaps = 47/526 (8%) Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +D +G + N L Y + I+ + + P+ + A Sbjct: 18 QAILDSADFVIVSTDINGLIQTLNAGALKQFGYSPEEIIDRVTPI--IFHDPEEVEQRAQ 75 Query: 382 ---KPVMLYRSDR-TCIAASARLHTIQ-------WNRENSLAMTFIPFEKANQFPENMPQ 430 + + AR+ + + + N Sbjct: 76 VLSHELGHAIEPGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLGHLTGF 135 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 GI + + + + + + + G+A+++ G L N A++ L GYP Sbjct: 136 LGIGKDITAQQAAEASLVESEARFSAAFQNAPIGMALVSPSGQCLRVNHALAHLLGYPQT 195 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ T + S+ +++ ++ + + + + + Sbjct: 196 KLMDLILTEMIHPKDRSIEETNRLRLVA-REIGNYCLELRCLHQQGHEVWVLMNVSLVNG 254 Query: 551 SSCY----SLTMHDISEWKQEKNKLSHAKKIAEK------------------ESSHKSDF 588 Y + + DI+ KQ + +L E+ + KS F Sbjct: 255 QEVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTEIANQAKSRF 314 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +A +SHE RTPL I+GFS+++ R N I RSG +L +VN+++ +S Sbjct: 315 IANMSHEFRTPLNGIMGFSQLLLQDRRITSD---QQSNLNVILRSGEHLLSLVNEVITLS 371 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 KIE+G + + V+L L+ L AN K I + A ++P+ + D + ++QI Sbjct: 372 KIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIHIAPDVPQYVRTDAKKLRQI 431 Query: 708 ALNILSNAIHFTPSGGQI-IISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +N+L NA+ FT G + + S E+ ++DTG G+ + L + +PF Q Sbjct: 432 LINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQDTGPGIPGHLLPQLFEPFAQ 491 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + G GLGL + + + G I S +GT + Sbjct: 492 -DPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTVSFYI 536 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 18/154 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + +IL++ I + G+I + N K FGY E+I+ + + Sbjct: 11 QHSQSWQQAILDSADFVIVSTDINGLIQTLNAGALKQFGYSPEEIIDRVTPIIFHDPEEV 70 Query: 508 VMNHYLTE--------------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551 + I+ + E I K+ +R+ + L Sbjct: 71 EQRAQVLSHELGHAIEPGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLG 130 Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + DI+ + + L ++ Sbjct: 131 HLTGFLGIGKDITAQQAAEASLVESEARFSAAFQ 164 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 31/336 (9%), Positives = 85/336 (25%), Gaps = 36/336 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------------ 136 D +G ++ ++ K G ++I V+ I+ DP Sbjct: 31 TDINGLIQTLNAGALKQFGYSPEEIIDR----VTPIIFHDPEEVEQRAQVLSHELGHAIE 86 Query: 137 -------LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 +K + + I + P+ L+ + + +GF G G Sbjct: 87 PGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLGHLTGFLGIG--KDITA 144 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-----VSSLT 244 A + +FS + ++ HL + + Sbjct: 145 QQAAEASLVESEARFSAAFQNAPIGMALVSPSGQCLRVNHALAHLLGYPQTKLMDLILTE 204 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + +T + L+ E + + ++ + + Sbjct: 205 MIHPKDRSIEETNRLRLVAREIGNYCLELRCLHQQGHEVWVLMNVSLVNGQEVYPPYCIV 264 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 + + +++ + + + A F+ ++ Sbjct: 265 QVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTEIANQAKSRFIANMSHEFRT 324 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + G S LL + ++ + + + Sbjct: 325 PLNGIMGFSQLLLQDRRITSDQQSNLNVILRSGEHL 360 Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 11/188 (5%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 Q E+ + F PI + + G ++ L +G K+ Sbjct: 143 TAQQAAEASLVESEARFSAAFQNAPIGMAL-----VSPSGQCLRVNHALAHLLGYPQTKL 197 Query: 114 IGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 + + L ++ I+ N + + + + + +G V + + + + Sbjct: 198 MDLILTEMIHPKDRSIEETNRLRLVAREIGNYCLELRCLHQQGH--EVWVLMNVSLVNGQ 255 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 E V A +RL+ L E + E +I +Q Sbjct: 256 --EVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTEIANQAKSR 313 Query: 232 PHLRMKNK 239 M ++ Sbjct: 314 FIANMSHE 321 >gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506] gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506] Length = 1504 Score = 349 bits (896), Expect = 1e-93, Method: Composition-based stats. Identities = 128/762 (16%), Positives = 252/762 (33%), Gaps = 67/762 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150 ++ ++ + IG LC++ + +++ + + ++ Sbjct: 630 DFRIEYVNNAAFLNNQMTGEEQIGRGLCELLPNHRESGLFDEYCQVVETGQSLVKDSLVY 689 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR---ALGKRLDKKFSHL 207 E + + + G G+ ++ Sbjct: 690 EDEYGQQRL------VRAFDIRIAKLGDGFVATWRDITDRKQTEVELQEGRTQLQQQLAE 743 Query: 208 HEIKKGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 E ++ + D + + ++ E D + Sbjct: 744 IEAIYQNAPIGLAILDTDLRFVRINQRLAEINGYSVEAHLGCTIRELLPDLADAAEGILR 803 Query: 260 PLLTSEESSLPEQ---EDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAY 314 P+L + E L + E + + + + N+ + Sbjct: 804 PILETGEPLLNVEIRGETPARPGVPRIWLEHFLPLKHNDRIIGISTVCEEITERIQTELL 863 Query: 315 FDEGENLTPETVDKCPIPFFV-----YSHGN-----LFYANPSFLLLTKYKSVDDIEIAG 364 E E + F V L NP F T ++ A Sbjct: 864 LRESEERYRTLFESMNEGFCVIEMLFDERDRPIDYHLLEINPVFEQQTG------LKQAQ 917 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G + P L +N+ + N ++ F Sbjct: 918 GKTVRQIVPNL-ENHWFEIYGDIALTGKPARFE--------NGSQAMNRWFEVSAFRVGK 968 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 PE+ + + D + + + + + E + N EG +L N+ S Sbjct: 969 PESRRVAILFKDISDRKQVEAALRQSEERYRCLAELIPQLVWTANAEGALLDVNQRWSNF 1028 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G +E + + + + TE + + + + Sbjct: 1029 TGLTLEQVHINGWEQVVHSEDLPALFQAWTEAVQQG--SSYQAEGRMRRADGVYRWHLHQ 1086 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVS 593 + T DI KQ + + A++ AE+ + K +FLA +S Sbjct: 1087 AIGQKNEQGQIVKWFGTATDIEAQKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILS 1146 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+R+PL I+G++++++ ++F + + E I+R+ L +++DLLD++KI G Sbjct: 1147 HELRSPLNPILGWTKLLQTRKFNEI---KTAEALATIERNAKLQCQLIDDLLDVAKILRG 1203 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K+++ PV+L + AI V+ A K IL+ NI ++ D ++QI N+LS Sbjct: 1204 KLSIDTTPVNLVFVIESAIDTVRTAAVSKSILLHPVL-PNIGQVAGDSTRLQQIVWNLLS 1262 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI FTP+GG++ I + + V DTG G+ L + F Q S + G Sbjct: 1263 NAIKFTPNGGRVDIRIERVKD-SAHIIVSDTGKGINPAFLPYIFESFRQEDVSITRKYGG 1321 Query: 774 TGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 GLGL + + +V+A+ G S G + PL + + Sbjct: 1322 LGLGLAIVRNLVEAHGGTISADSPGEGLGATFTVRLPLLNLA 1363 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 44/423 (10%), Positives = 117/423 (27%), Gaps = 31/423 (7%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVS 241 H A + +++ + + + + + L Sbjct: 329 HELAERQQVEAALRESEERLQLALKASRMGTWNWNLQTGKITWSDNLEALFGLEPGEFDG 388 Query: 242 SLTEYYAH---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 S + A D S + + N L + + + Sbjct: 389 SFEMFVARLHPDDRDRVVGAVDRAISTGENYDIEFRIVYPNGTMRWTMSQGKVLYDQNGQ 448 Query: 299 SFEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352 E L +A E+ + + F++ + Y +P++ L Sbjct: 449 PMEMTGIDLDITERKRSAAALYASEDRFRQLAENINAVFWIKEIPENQVSYVSPAYQHLW 508 Query: 353 KYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + + + + N A + I N Sbjct: 509 GLNPQELYKDQQVWVDRIYPEDREEVNRAFQEKAAAGKFDEEY-------RIVLADGNIR 561 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIA--I 467 + F ++ E GI + D + +++ + + + ++ D GI + Sbjct: 562 WVRDRCFPLHDETGEIYRFTGIAEDITDRKHSEQALRESEERFRTSVDNMLDCFGIYSAM 621 Query: 468 INREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 N +G I N A E+ + + L + S + +++ + Sbjct: 622 RNEQGQIVDFRIEYVNNAAFLNNQMTGEEQIGRGLCELLPNHRESGLFDEYCQVVETG-Q 680 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 ++ + + + +R ++ + T DI++ KQ + +L + +++ Sbjct: 681 SLVKDSLVYEDEYGQQRLVRAFDIRIAKLGDGFVATWRDITDRKQTEVELQEGRTQLQQQ 740 Query: 582 SSH 584 + Sbjct: 741 LAE 743 Score = 113 bits (284), Expect = 1e-22, Method: Composition-based stats. Identities = 50/535 (9%), Positives = 129/535 (24%), Gaps = 54/535 (10%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + +S G ++ + D + N + + Sbjct: 493 PENQVSYVSPAYQHLWGLNPQELYKDQQVWVDRIYPEDREEVNRAFQEKAAAGKFDEEYR 552 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G + P++ E +R GI + +++F Sbjct: 553 IVLADGNIR--WVRDRCFPLHDETGEI--YRFTGIAEDITDRKHSEQALRESEERFRTSV 608 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + Q + N ++ ++ + LL + S Sbjct: 609 DNMLDCFGIYSA-MRNEQGQIVDFRIEYVNN-AAFLNNQMTGEEQIGRGLCELLPNHRES 666 Query: 269 LPEQEDFHTINLNQ-------------------YTKKQYFGTLQNNSKESFEYLSHRNHP 309 E + Q L + ++ ++ R Sbjct: 667 GLFDEYCQVVETGQSLVKDSLVYEDEYGQQRLVRAFDIRIAKLGDGFVATWRDITDRKQT 726 Query: 310 SLSA-----YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363 + + PI + N + Y + Sbjct: 727 EVELQEGRTQLQQQLAEIEAIYQNAPIGLAILDTDLRFVRINQRLAEINGYSVEAHLGCT 786 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + LL + ++P+ + + R T + + Sbjct: 787 --IRELLPDLADAAEGILRPI--LETGEPLLNVEIRGETPARPGVPRIWLEHF--LPLKH 840 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-------NR--EGII 474 + + + E + + + + ++ E+ ++G +I +R + + Sbjct: 841 NDRIIGISTVCEEITERIQTELLLRESEERYRTLFESMNEGFCVIEMLFDERDRPIDYHL 900 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 L N + G + K + Y L+ + GS Sbjct: 901 LEINPVFEQQTGL--KQAQGKTVRQIVPNLENHWFEIYGDIALTGKPARFEN----GSQA 954 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + P S ++ DIS+ KQ + L +++ + + Sbjct: 955 MNRWFEVSAFRVGKPESRRVAILFKDISDRKQVEAALRQSEERYRCLAELIPQLV 1009 Score = 95.5 bits (236), Expect = 4e-17, Method: Composition-based stats. Identities = 33/325 (10%), Positives = 88/325 (27%), Gaps = 25/325 (7%) Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETVDKCP 330 H + + L+ + + L A + E E+ ++ Sbjct: 290 AHHCLAPRSWQPLEIELLKELTIQVGIALRQAELYQQAKHELAERQQVEAALRESEERLQ 349 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDI-----EIAGGLSTLLDAPKLSDNNAI--KP 383 + G N +T +++ + G + A D+ Sbjct: 350 LALKASRMGTWN-WNLQTGKITWSDNLEALFGLEPGEFDGSFEMFVARLHPDDRDRVVGA 408 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 V S I + +Q + M GI+ + + + + Sbjct: 409 VDRAISTGENYDIE---FRIVYPNGTMRWTMSQGKVLYDQNGQPMEMTGIDLDITERKRS 465 Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL--RKPFTVF 500 + + + E + I E + + A L+G +++ ++ + Sbjct: 466 AAALYASEDRFRQLAENINAVFWIKEIPENQVSYVSPAYQHLWGLNPQELYKDQQVWVDR 525 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + +N E + ++ + + +R L + ++ Sbjct: 526 IYPEDREEVNRAFQEKAAAGK---FDEEYRIVLADGNIRWVRDRCFPLHDETGEIYRFTG 582 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKE 581 DI++ K + L +++ Sbjct: 583 IAEDITDRKHSEQALRESEERFRTS 607 Score = 90.9 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 34/388 (8%), Positives = 97/388 (25%), Gaps = 27/388 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D I++ L + G +G + ++ L + +L+ Sbjct: 758 LDTDLRFVRINQRLAEINGYSVEAHLGCTIRELLPDLADAAEGILRPILETGEPLLNVEI 817 Query: 149 L--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 P + ++ LP+ +R G + L + ++++ Sbjct: 818 RGETPARPGVPRIWLE-HFLPLKHNDR-IIGIST--VCEEITERIQTELLLRESEERYRT 873 Query: 207 LHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E + E+ + + + ++ + Sbjct: 874 LFESMNEGFCVIEMLFDERDRPIDYHLLEINPVFEQQTGLKQAQGKTVRQIVPNLENHWF 933 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----HRNHPSLSAYFDE 317 + N +Q + + + K ++ + + A + Sbjct: 934 EIYGDIALTGKPARFENGSQAMNRWFEVSAFRVGKPESRRVAILFKDISDRKQVEAALRQ 993 Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E + P + + G L N + T +E Sbjct: 994 SEERYRCLAELIPQLVWTANAEGALLDVNQRWSNFTGLT----LEQVHINGWEQVVHSED 1049 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + A R+ + + N+ + + G + Sbjct: 1050 LPALFQAWTEAVQQGSSYQAEGRM---RRADGVYRWHLHQAIGQKNEQGQIVKWFGTATD 1106 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDG 464 ++++E+E +L + + + Sbjct: 1107 I----EAQKQLEVERDRLLQLEQTAREA 1130 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 6/189 (3%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L W + + + + + E + + + + +L L+ Sbjct: 294 LAPRSWQPLEIELLKELTIQVGIALRQAELYQQAKHELAERQQVEAALRESEERLQLALK 353 Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516 A+ G N + G I + + LFG + + F L + + + Sbjct: 354 ASRMGTWNWNLQTGKIT-WSDNLEALFGLEPGEFDGSFEMFVARLHPDDRDRVVGAVDRA 412 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHA 574 +S +E + + + + +T DI+E K+ L + Sbjct: 413 ISTGENYDIEFRIVYPNGTMRWTMSQGKVLYDQNGQPMEMTGIDLDITERKRSAAALYAS 472 Query: 575 KKIAEKESS 583 + + + Sbjct: 473 EDRFRQLAE 481 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 6/184 (3%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + SE + + W +A G L ++++ G ++ Sbjct: 978 FKDISDRKQVEAALRQSEERYRCLAELIP-QLVWTANAEGALLDVNQRWSNFTGLTLEQV 1036 Query: 114 IGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 V + + +++ +++ + + +G +Y A+ + Sbjct: 1037 HINGWEQVVHSEDLPALFQAWTEAVQQGSSYQAEGRMRRADG--VYRWHLHQAIGQKNEQ 1094 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 + + FG RL + E + + ++ E I S + P Sbjct: 1095 GQIV--KWFGTATDIEAQKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILSHELRSP 1152 Query: 233 HLRM 236 + Sbjct: 1153 LNPI 1156 >gi|309792184|ref|ZP_07686656.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308225725|gb|EFO79481.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 887 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 114/746 (15%), Positives = 232/746 (31%), Gaps = 46/746 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 + S + +G + V +D + + + Sbjct: 151 RILFSSAAFERVLGYSLQCFVDDPNFFMRVVHPDDLDLAITMRQKALTDGHIEFEHRMLL 210 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G I + I+ H +++ E Sbjct: 211 PNG--AVRWILRRSWVIFDDQGRPLIVN--DHAHDITKHKQTEIALMESEQRLRLFVEHA 266 Query: 212 KGHSSVEKEKYDIF----------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + R V Y + + Sbjct: 267 PAAIAMFDRTMVYLLASRRYLEDYQLKDCAIIGRSHYDVFPEIPDYWREIHQRCLQGAVE 326 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E + + + G + S ++ Sbjct: 327 KNEGEPFPRSDGRVDWVRWELHPWRDLQGEIGGLVLFSEVITQRVEALQAFKASEQRYRQ 386 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 E + P G + ANP+ Y V+ +++ P+ + Sbjct: 387 MFE-MHGLPKLIIALDTGQIINANPAAGRFYGYT-VEQLKMLNIADLTFLTPEEVHQHIQ 444 Query: 382 KPVML---------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + +D L +++ L + + + + + + Sbjct: 445 QTINANMYSVECLHRGADGYPRHVEMFLGLLEFEGRQELYVLITDVTERQRTRKALQEA- 503 Query: 433 IEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + ++ R+ R +++ Q+ + G ++ G+ + N + GY E Sbjct: 504 --YDLMEQRVIARTIELQRYAAQVQDLYNNAPAGYHSLDTNGVFVQINDTELRWLGYTRE 561 Query: 491 DILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++L K + T V + LE + K+ + + I + Sbjct: 562 EVLGKKYILELISPATRHVFERNFPIFKQQGWIKNLEFELV--RKDGSIFPVLIDATAIF 619 Query: 550 FSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + D++E KQ + L A + + S KS F++ SHE RTPL AI+ Sbjct: 620 DDQGRFVHSRSTLYDMTERKQADDALRLAWQKEHELSELKSRFVSMASHEFRTPLAAILA 679 Query: 606 FSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 +E + + N I+ + I + + +I+ D+L +++I++G+M L Sbjct: 680 TTETL--TIYRDRMNEAQIDARLDKIRQQVMHMKEIMEDVLQLARIQAGRMEFRPLIEDL 737 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 D E + + + I S D R ++QI N++SNA+ ++ Sbjct: 738 DALCREIVEEYETQVRQPG-RIAYSCPQRPVLAEIDPRLMRQIISNLISNALKYSAPQSS 796 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + I+ VIL V D G+G+ +L++ PF + N I GTGLGL +A Sbjct: 797 VCITLQREVQ-RVILTVTDQGIGIPPNDLKRLFDPFHRATNVGTIA--GTGLGLSIAHQA 853 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 +D + G +I S +GT + + PL Sbjct: 854 IDLHHGTIHIASEVDQGTTMTVTIPL 879 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 10/132 (7%) Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNH 511 +IL+ D + + IL ++ A ++ GY ++ + P F + + + Sbjct: 132 QAILDTMLDAFTSFSLTDRRILFSSAAFERVLGYSLQCFVDDPNFFMRVVHPDDLDLAIT 191 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567 + L+ +E + + + L + HDI++ KQ Sbjct: 192 MRQKALTDGH---IEFEHRMLLPNGAVRWILRRSWVIFDDQGRPLIVNDHAHDITKHKQT 248 Query: 568 KNKLSHAKKIAE 579 + L +++ Sbjct: 249 EIALMESEQRLR 260 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 25/249 (10%), Positives = 68/249 (27%), Gaps = 12/249 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D +G +I++ + +G +++G + ++ + K+Q Sbjct: 539 LDTNGVFVQINDTELRWLGYTREEVLGKKYILELISPATRHVFERNFPIFKQQGWIKNLE 598 Query: 148 T-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L +G+ P+ + A I+ F R ++ + +K Sbjct: 599 FELVRKDGSIF--PVLIDATAIFDDQGRFVHSR--STLYDMTERKQADDALRLAWQKEHE 654 Query: 207 LHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L E+K S+ ++ + + + D ++ + + Sbjct: 655 LSELKSRFVSMASHEFRTPLAAILATTETLTIYRDRMNEAQIDARLDKIRQQVMHMKEIM 714 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----PSLSAYFDEGEN 320 E L + + + +E + P + Sbjct: 715 EDVLQLARIQAGRMEFRPLIEDLDALCREIVEEYETQVRQPGRIAYSCPQRPVLAEIDPR 774 Query: 321 LTPETVDKC 329 L + + Sbjct: 775 LMRQIISNL 783 >gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus thermoglucosidasius C56-YS93] gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1] gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus thermoglucosidasius C56-YS93] gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. Y4.1MC1] Length = 744 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 111/722 (15%), Positives = 242/722 (33%), Gaps = 49/722 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G +++E + ++IG ++ D++ D +L + ++ + + Sbjct: 52 GEFVDVNEAACQLFEMEKRELIGKKMTMFLDLVPPDILMFQQSMLHKFGSFSDELLVKLR 111 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G ++ + EF I+ + F + Sbjct: 112 NGKVKHIEFSMK----KDAFNEFD----LVIMRDISARKALERERIIHEFLFKDVFNRAV 163 Query: 213 GHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + E K K+ +L+ + + L +E Sbjct: 164 DGIVIFDEFGRFIDVNPAFCMSLNLEKAKLLNLSFQQFIAKECVDDFVRLLAELKEKGTA 223 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDKC 329 + E + T S ++ + E ++ Sbjct: 224 KGELSLVRFDGTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQA 283 Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 ++ G + AN + + ++ + L L D + +R Sbjct: 284 HEAILIWDDRGYILNANRAASRTFEL-PLNLLVRKNLLDFL----DRDDEKVQRVFAQFR 338 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 T + F Q + I + R ++++ Sbjct: 339 KTGEIRDEL----TFHMPNGEDKQLEFT----MKQGAIDGYHLTIFRNVTERRKMEKELR 390 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + SI + +GI + + IL N + F E +L +P T F+ + Sbjct: 391 ESEQKFRSIFDHAMNGILLWGEDYRILDVNPIACEFFQAAKEQLLHRPITAFIPEKARKH 450 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + + + S+ E++ + + K++ + + DI+E K+ + Sbjct: 451 FDKLIQQCDRCGEAY---AEMDFSSGEKQKIVEFALKKEIIPGVGMIM-LRDITERKELE 506 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L + + + A ++HEIR P+TA+ GF ++++ Y Y N Sbjct: 507 LQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSI-----KEDYSMYFN 556 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I + I+ + L ++K ++ + ++ + + + + I L+ A + I Sbjct: 557 VIMSELKRIESIITEFLVLAKPQA----IQYQQNDVCKIMQDTIDLISAQAMMHNVQIVA 612 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 FA IP I + +KQ+ +NIL NAI P GG++ + + + + + D G G+ Sbjct: 613 DFALPIPCIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRIGRLDDSHIRISITDQGCGI 672 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +++K +PF + GTGLGL ++ +++ + GK + S GT I Sbjct: 673 PQDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHQGKIDVESEVGVGTTFHITL 726 Query: 809 PL 810 P+ Sbjct: 727 PI 728 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 32/368 (8%), Positives = 99/368 (26%), Gaps = 32/368 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G +++ ++ K++ + +D + LK + T G+ +L Sbjct: 170 DEFGRFIDVNPAFCMSLNLEKAKLLNLSFQQFIAKECVDDFVRLLAELKEKGTAKGELSL 229 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT + + + + GF I+ + ++ +++F + Sbjct: 230 VRFDGTVKMFELTTTS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279 Query: 208 HEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263 E + + Y + + ++ + + L ++ D+ ++ Sbjct: 280 FEQAHEAILIWDDRGYILNANRAASRTFELPLNLLVRKNLLDFLDRDDEKVQRVFAQFRK 339 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E + ++ FH N + + + + + E E Sbjct: 340 TGE--IRDELTFHMPNGEDKQLEFTMKQGAIDGYHLTIFRNVTERRKMEKELRESEQKFR 397 Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D ++ + NP + + + + Sbjct: 398 SIFDHAMNGILLWGEDYRILDVNPIACEFFQAAKEQLLHRP-------ITAFIPEKARKH 450 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L + C A A + ++ + + + + + Sbjct: 451 FDKLIQQCDRCGEAYAEMDFSSGEKQKIVEFALKKEIIPGVGM------IMLRDITERKE 504 Query: 443 NKRKMEIE 450 + ++ Sbjct: 505 LELQLRKS 512 Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 3/143 (2%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + R+++ ++ I E + D I I N+ G + N A +LF ++ Sbjct: 13 LMVDVKLLEEENRRLKEQLNGYSIIFERSLDAIVIFNKSGEFVDVNEAACQLFEMEKREL 72 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + K T+FL+ P ++ + + + L + K+ + +KK F+ Sbjct: 73 IGKKMTMFLDLVPPDILMFQQSMLHKFG---SFSDELLVKLRNGKVKHIEFSMKKDAFNE 129 Query: 553 CYSLTMHDISEWKQEKNKLSHAK 575 + M DIS K + + + Sbjct: 130 FDLVIMRDISARKALERERIIHE 152 >gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp. 1NLS2] Length = 600 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 186/372 (50%), Gaps = 9/372 (2%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +E + + SD IA G + + A L G P +L + Sbjct: 199 LAVEERRYRLLARNISDVIARHRANGDLNFISPAAEVLLGVPGPTLLLHGLFDRVHVADR 258 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSS-------CYSLTM 558 L++ ++E + + + + + L + M Sbjct: 259 PRYLTALSDAARGGEASSVEFRVRRESPHGPEFAWVEMRCRPLEPTQDQASGAFEVVSVM 318 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E K ++ L A++ AE+ + KS FLA +SHE+RTPL AIIGFSE+I + L Sbjct: 319 RDVTERKMQEQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKL 378 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R EYA I+ SG +L +VN +LD+SK+ESGK L EP + EA+S +L+ L Sbjct: 379 DAARRREYAGLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCNLMVLK 438 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A + I + T +++P++ D R+ KQI LN+LSNAI FT GG + +S E++ Sbjct: 439 ARDNGIDLTTRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVSAQVE-GRELL 497 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 LRV DTG+G+ +L + PF Q S Q R EGTGLGL + K++V + G+ + S Sbjct: 498 LRVADTGIGIGKDDLARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKVESEL 557 Query: 799 AKGTLIEIIFPL 810 +GT I + P+ Sbjct: 558 DRGTTISVRLPM 569 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 13/226 (5%), Positives = 47/226 (20%), Gaps = 17/226 (7%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---- 295 + ++ A L +++ + + Sbjct: 117 LIAVPLEAALSASRRVVTAAVALALGCAAMLVVLESMNALPPSHLSSDVASLFTGLCIVL 176 Query: 296 ---SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351 + + + E + G+L + +P+ +L Sbjct: 177 ATIYAAGLAFGAESLARTSKHLLAVEERRYRLLARNISDVIARHRANGDLNFISPAAEVL 236 Query: 352 TKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + L L D + + + R+ + Sbjct: 237 LGVPGPTLL-----LHGLFDRVHVADRPRYLTALSDAARGGEASSVEFRVRRESPHGPEF 291 Query: 411 LAMTFIPFEKA---NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + +Q + + + ++ ++ +E + Sbjct: 292 AWVEMRCRPLEPTQDQASGAFEVVSVMRDVTERKMQEQALEAARQE 337 Score = 40.0 bits (92), Expect = 1.7, Method: Composition-based stats. Identities = 15/174 (8%), Positives = 43/174 (24%), Gaps = 3/174 (1%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTL 149 A+G L IS +G ++ L D + + D + + + Sbjct: 222 ANGDLNFISPAAEVLLGVPGPTLLLHGLFDRVHVADRPRYLTALSDAARGGEASSVEFRV 281 Query: 150 WPIEGTN-LYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +++ P+ + SG F ++ + ++ Sbjct: 282 RRESPHGPEFAWVEMRCRPLEPTQDQASGAFEVVSVMRDVTERKMQEQALEAARQEAEQA 341 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 K + + + + + ++ + L Sbjct: 342 GASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKLDAARRREYAGLINESGL 395 >gi|254412809|ref|ZP_05026582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180544|gb|EDX75535.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 622 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 91/512 (17%), Positives = 196/512 (38%), Gaps = 23/512 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE 361 + E + V + + S G Y +P F + Y+ + Sbjct: 126 QIVQRKDIETSLRETQERFILAVRGSGDGLWDWNISTGE-VYFSPRFKQILGYEEQEGEN 184 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + + + + + + A RL + + Sbjct: 185 HYNFWESKVHPED--RDRVMAAMQNHLENHVPYAIEYRLCQKYGD---YCWIYARAQAIW 239 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ + G + D + + ++ + ++++ T G +++R+GI+L N+ Sbjct: 240 DETGKPTRMAGSISDITDRKRAEEALQQSEAKYRALIDTTQTGYVVLDRQGIVLDANQEY 299 Query: 482 SKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 ++ G DIL KP ++ + + L T ++ Sbjct: 300 VRVTGQSNVSDILGKPVLDWIAPYDLERNVAEIQKALVER--SVQNLETDYCHANGTIIP 357 Query: 541 LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + I + + DI+E KQ + +L A + + F SH++R Sbjct: 358 IEINARVIDTDEGCRILALCRDITERKQARQELKAAIADLARSNQDLEQFAYVASHDLRE 417 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I +S+++ + G L + R +Y YI + + +++DLL S++ K L Sbjct: 418 PLRKIRSYSDLLVKRYRGKL-DERADKYIAYITDATQRMQSLISDLLTYSRV--SKPELI 474 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 EP L + + ++ + E + +I T ++P++ A+ + Q+ N+++N I F Sbjct: 475 PEPTDLGHILKKTLADLSPLIKENKAIITTD---SLPQVNANPTQMAQLLQNLITNGIKF 531 Query: 719 -TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 T +I I T + + V+D G+GM ++ F ++ + GTG+G Sbjct: 532 RTQQPPRIHI-TATREGQFWQIAVQDNGIGMDTQYCDRIFVIFQRLH--YREEYPGTGIG 588 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L ++K +V+ + G+ ++ S +GT P Sbjct: 589 LAVSKKIVERHGGQIWVESELGQGTTFYFTLP 620 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 8/137 (5%) Query: 89 IDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146 +D G + + ++E + G ++G + D ++ N I L ++ + Sbjct: 286 LDRQGIVLDANQEYVRVTGQSNVSDILGKPVLDWIAPYDLERNVAEIQKALVERSVQNLE 345 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T GT +PI++ A I + R + R K + Sbjct: 346 TDYCHANGTI--IPIEINARVIDTDEGC----RILALCRDITERKQARQELKAAIADLAR 399 Query: 207 LHEIKKGHSSVEKEKYD 223 ++ + + V Sbjct: 400 SNQDLEQFAYVASHDLR 416 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 65/244 (26%), Gaps = 14/244 (5%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKR--QNTWYGKTTLWPI 152 S + +G + G + + +H + + + ++ +N Sbjct: 165 VYFSPRFKQILGYEEQE--GENHYNFWESKVHPEDRDRVMAAMQNHLENHVPYAIEYRLC 222 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + Y I A I+ + + R G + ++ + K+ L + + Sbjct: 223 QKYGDYCWIYARAQAIWDETGKPT--RMAGSISDITDRKRAEEALQQSEAKYRALIDTTQ 280 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTSEES 267 V + + + ++ VS + ++ A D + E S Sbjct: 281 TGYVVLDRQGIVLDANQEYVRVTGQSNVSDILGKPVLDWIAPYDLERNVAEIQKALVERS 340 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + D+ N + + + L+ + + + Sbjct: 341 VQNLETDYCHANGTIIPIEINARVIDTDEGCRI--LALCRDITERKQARQELKAAIADLA 398 Query: 328 KCPI 331 + Sbjct: 399 RSNQ 402 >gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris trichoides DG6] Length = 616 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 101/465 (21%), Positives = 187/465 (40%), Gaps = 18/465 (3%) Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + L L+ S +A L S L T E + Sbjct: 4 AELEVNQVALQELIHPDDRSRLDATLMAYLR---GETEHFSIELRTNPSEGEPRWVLCRG 60 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + G + + + ++ + ++ + GI NR G Sbjct: 61 QAIEHDTDGAVVRMAGTYMDITERVAIEDQLRASEQRYQTLSTISPVGIYRANRHGFFTY 120 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N + G P + L + ++ ++ ++ + +S + + Sbjct: 121 VNPRWCAIVGVPADAGLGMGWLRYIHPEDYMLVRNFWDKTISTQQESQI--EFRYLRPDG 178 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHK 585 ++ + + S Y T DI+ + +L + E+ + K Sbjct: 179 RICWVIAQVVAETDPSGSLLGYVGTQVDITRRMVVEERLRQQSALLEEANTNLAKAARLK 238 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 FLA +SHE+RTPLT IIGFSE + +G LG+ + ++ +G +L ++ND+L Sbjct: 239 DQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQR-AVQHVFDNGQHLLQLINDIL 297 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+++I +G ++L PV +D+A E I L+ K+ + I AD+ V+ Sbjct: 298 DLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYTACEAGLSIEADILRVR 357 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 QI +N+LSNA FTP GG + + + +EV + D G+G+ + +PF Q+ Sbjct: 358 QILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGIAANQQNMLFQPFVQLD 417 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL L + +V + G+ + S +G+ + P Sbjct: 418 DRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFLP 462 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 22/195 (11%), Positives = 53/195 (27%), Gaps = 4/195 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144 + + HG+ ++ +G A +GM + D + Q Sbjct: 109 IYRANRHGFFTYVNPRWCAIVGVPADAGLGMGWLRYIHPEDYMLVRNFWDKTISTQQESQ 168 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G +V + A + G+ G V + R L ++ Sbjct: 169 IEFRYLRPDGRICWVIAQVVAE--TDPSGSLLGYVG-TQVDITRRMVVEERLRQQSALLE 225 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + K ++ ++ + P + + Y D + + + Sbjct: 226 EANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQRAVQHVFDN 285 Query: 265 EESSLPEQEDFHTIN 279 + L D + Sbjct: 286 GQHLLQLINDILDLA 300 >gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1058 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 124/672 (18%), Positives = 233/672 (34%), Gaps = 35/672 (5%) Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + G G + + R + L + +Q + Sbjct: 92 AGDQPGDTGATLTQLLREQPIIKELIQVDADGRVLARASTDAPVL---ADLFTVAQANWF 148 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 R + + A + + + F + + + Sbjct: 149 VTARRGDTYIGDMQLSAATEPYAVFAVPASRGGVIACRLRVDRFSQLVAELHFGRGGISY 208 Query: 292 LQNNSKESFEYLSHRNHPSLSAY--FDEGENLTPETVDKCPIPFFVYSHGNLFYANPS-- 347 L + + R P +L TVD + ++ + + Sbjct: 209 LVSREGRVIAHSGSRLIPGAHEQGHHHHLLDLIRTTVDSWSGTYQNFNGHWVVGTIAAVP 268 Query: 348 ---FLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 ++ +T+ + L TL A + V + + Sbjct: 269 GTPWMAVTELPLEEAHAASWRALWTLFIAALIITATLTVLVTWLLKRQFLGPLEQLQQGV 328 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSIL 458 +L I +++ + R + R M+ + +I+ Sbjct: 329 TQIGHGALD-HRIVLAGPSEYLHLAGAFNHMAATLQQREAQLAEQNRAMQASEARYRAIV 387 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E ++ + G I N A + F P + + L + P L + Sbjct: 388 EDQTELVCRYLPTGDITFANEAFCRYFDRPRDQLDGVDCRQMLSPDNPEAALRLLDTLCP 447 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574 E + + ++ L + + Y+ HD++E KQ L Sbjct: 448 AHPVARSEHRLV--RPDGEIRWLHWTNRAIFDDRGNLVEYAGVGHDVTERKQTAEALLRT 505 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE + KS FLA +SHEIRTPL AIIG + + + R + + + + + Sbjct: 506 KEEAEAANRAKSRFLANMSHEIRTPLNAIIGMTHLAMHTR----EDDKRQRFLATVAHAA 561 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +L ++ND+LDISK+E+G+++L EP V +++ + A+EK + +R + Sbjct: 562 DSLLGLLNDILDISKMEAGQLSLATEPFDPRRLVEASVATLAAQASEKGLDLRLHLGPAL 621 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVG 747 P +L D ++QI LN+L NA+ FTP+G I + E + LRV DTG+G Sbjct: 622 PDCLLGDALRLRQILLNLLGNAVKFTPAG-TITLEAFAEEAEDADNRVYLHLRVTDTGIG 680 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +LE F Q NS + G GLGL ++ + G+ + S +G+ + Sbjct: 681 IPAEKLELIFNRFEQADNSYGRQYGGAGLGLSISAQLAALMHGRLWAESRENQGSTFHCL 740 Query: 808 FPLYDTSHPHDC 819 P + P + Sbjct: 741 IPFPRCAWPAEA 752 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 59/245 (24%), Gaps = 10/245 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTL 149 G + +E + ++ G+ + + + + D L + + L Sbjct: 399 PTGDITFANEAFCRYFDRPRDQLDGVDCRQMLSPDNPEAALRLLDTLCPAHPVARSEHRL 458 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + I+ + G G H R ++ + Sbjct: 459 VRPDGEIR--WLHWTNRAIFDDRGNLVEYAGVG--HDVTERKQTAEALLRTKEEAEAANR 514 Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K + + I H R +K AH D L +L Sbjct: 515 AKSRFLANMSHEIRTPLNAIIGMTHLAMHTREDDKRQRFLATVAHAADSLLGLLNDILDI 574 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + TL + E L P+L + Sbjct: 575 SKMEAGQLSLATEPFDPRRLVEASVATLAAQASEKGLDLRLHLGPALPDCLLGDALRLRQ 634 Query: 325 TVDKC 329 + Sbjct: 635 ILLNL 639 >gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus mahii DSM 5219] Length = 1108 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 129/724 (17%), Positives = 248/724 (34%), Gaps = 95/724 (13%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 I+ RE S GF ++ ++ L + + Sbjct: 394 IHDLFREVSDDLGFA-LYKIEMEKKRDQYETHL----HLMSRNMNDVILETDVEGRYTYI 448 Query: 228 QSPPPHL--RMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + R K + H DD+ + + + + Sbjct: 449 SPSHQRILGRGKELLGKNCMKDLHPDDIDFVAGIFGEIVETGEQHHAEYRYLHPEKGYIW 508 Query: 285 KKQYFGTLQNNSKESFEYLSHRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340 + + + + + ++ R+ + E + + P F+ G Sbjct: 509 LESVATSYVDENGQKRVLINTRDVTERKETENTLIKSEAKFKSYITQAPAGIFIADENGY 568 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 NP+ +T Y + + + D + + + + + Sbjct: 569 YVDVNPAACEMTGYSKDELLGMNLLELLPHDIHRHVIDQFEDVINKGK-------IDIEI 621 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----------EIE 450 + + G + + + + E E Sbjct: 622 PYLTKEGDRKWW------RVTAAALPEGRVIGFVKDITIQKSTESDLSEALNRSQHREKE 675 Query: 451 VMQL----CSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVED-----ILRKPFT 498 + +L +ILE + I + ++ L E+ + Sbjct: 676 ITELLNSTRAILEIDDFEVVARHIFDACARVIGAKAGYVALLSDTGEENELLFLEDGGMP 735 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCY 554 ++ + P + E + E ++ ++ L Sbjct: 736 CSVDPDLPMPVRGLRNEAYETGEVVFENDFMASEWVKYMPEGHMVLPNVLFSPLNIEGKT 795 Query: 555 SLTMH------DISEW-----------------------------KQEKNKLSHAKKIAE 579 + D + K+ ++ + A ++A Sbjct: 796 VGVLGFAYKDGDFTIHDAWLAKTFGEHAAIALRNSRNFDVLKGTNKRLEDTVLKANELAA 855 Query: 580 KE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 + + KS+FLA +SHE+RTPL +IIGFS+++ + FG L + +Y I++SG Sbjct: 856 QAEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLT-QKQEKYTANINKSGKH 914 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L ++N++LD+SKIE+GKM + L+ S+ S++ L A +K I + S + +I Sbjct: 915 LLYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISKSVDI-E 973 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 I AD +KQI N+LSNAI FT G++ +S + V + V+DTG+G+ + E Sbjct: 974 INADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGIPEDKFETI 1033 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YD 812 PF Q+ S + GTGLGL L K V+ + G+ ++ S KG+ PL +D Sbjct: 1034 FDPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIPLKQPEFD 1093 Query: 813 TSHP 816 + HP Sbjct: 1094 SIHP 1097 Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats. Identities = 62/552 (11%), Positives = 134/552 (24%), Gaps = 77/552 (13%) Query: 95 LKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP- 151 +++ K +G + + + D ++ T K Sbjct: 149 FTHVNKASTKLVGYTPEEHYLDPQLAVKIIHPDD---KQRFLDYIE-GKTPIDKPIQVRW 204 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 I V I+ P+Y RN + G G + + + + + I Sbjct: 205 IHKDGQVVWIEQRNTPVYDRNSDLIALEGIG--RDITDIKNAQKREEHIKNVLLAIRNI- 261 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE--ESSL 269 E + + + + + + K+ + + S Sbjct: 262 NQMIVKEHDPERLIQKACSNLTETLGYYSAWIALVDDEKNVISTASSFSDFASGFDRLDR 321 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE------------------------YLSH 305 +E + Q K + + + FE + Sbjct: 322 QLKEGIFPQCMQQVLAKDEILIMDDPAGNCFECPLSFKYSDRASLCYRLQYNSKVYGILS 381 Query: 306 RNHPSLSAYFDEGENLTPETVD---------------------------KCPIPFFVYS- 337 P A DE +L E D Sbjct: 382 VAVPRKYADMDEIHDLFREVSDDLGFALYKIEMEKKRDQYETHLHLMSRNMNDVILETDV 441 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G Y +PS + ++ + L ++ A Sbjct: 442 EGRYTYISPSHQRILG--RGKELLGKNCMKDLHPDDIDFVAGIFGEIV---ETGEQHHAE 496 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 R + E + + + + + + S Sbjct: 497 YR----YLHPEKGYIWLESVATSYVDENGQKRVLINTRDVTERKETENTLIKSEAKFKSY 552 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + GI I + G + N A ++ GY +++L L + + +++ Sbjct: 553 ITQAPAGIFIADENGYYVDVNPAACEMTGYSKDELLGMNLLELLPHDIHRHVIDQFEDVI 612 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + ++ TKE R+ LP + DI+ K ++ LS A Sbjct: 613 NKGK---IDIEIPYLTKEGDRKWWRVTAAALP-EGRVIGFVKDITIQKSTESDLSEALNR 668 Query: 578 AEKESSHKSDFL 589 ++ ++ L Sbjct: 669 SQHREKEITELL 680 Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 24/266 (9%), Positives = 58/266 (21%), Gaps = 13/266 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGK 146 D G IS + +G +++G ID G++++ + + Sbjct: 438 ETDVEGRYTYISPSHQRILG-RGKELLGKNCMKDLHPDDIDFVAGIFGEIVETGEQHHAE 496 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 E Y+ ++ A N + R + + + KF Sbjct: 497 YRYLHPE--KGYIWLESVATSYVDENGQ---KRVLINTRDVTERKETENTLIKSEAKFKS 551 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + E + D Sbjct: 552 YITQAPAGIFIADENGYYVDVNPAACEMTGYSKDELLGMNLLELLPHDIHRHVIDQFEDV 611 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGEN 320 + + + + T ++ + L F + LS + ++ Sbjct: 612 INKGKIDIEIPYLTKEGDRKWWRVTAAALPEGRVIGFVKDITIQKSTESDLSEALNRSQH 671 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANP 346 E + + + Sbjct: 672 REKEITELLNSTRAILEIDDFEVVAR 697 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 38/320 (11%), Positives = 93/320 (29%), Gaps = 14/320 (4%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 N D + + + SE F + D +GY +++ + G + Sbjct: 528 NTRDVTERKETENTLIKSEAKFKSYITQAPAG-IFIADENGYYVDVNPAACEMTGYSKDE 586 Query: 113 MIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 ++GM L ++ +H + D++ + EG + + AALP Sbjct: 587 LLGMNLLELLPHDIHRHVIDQFEDVINKGKIDIEIP-YLTKEGDRKWWRVTAAALP---- 641 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 GF + + + AL + ++ + + +E + +++ ++ Sbjct: 642 EGRVIGFVKDITIQKSTESDLSEALNRSQHREKEITELLNSTRAILEIDDFEVVARHIFD 701 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 R+ + + Y A D + + L D + + T Sbjct: 702 ACARV---IGAKAGYVALLSDTGEENELLFLEDGGMPCSVDPDLPMPVRGLR--NEAYET 756 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFL 349 + + F + +P ++ + F Y G+ + Sbjct: 757 GEVVFENDFMASEWVKYMPEGHMVLPNVLFSPLNIEGKTVGVLGFAYKDGDFTIHDAWLA 816 Query: 350 LLTKYKSVDDIEIAGGLSTL 369 + + + L Sbjct: 817 KTFGEHAAIALRNSRNFDVL 836 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 12/142 (8%) Query: 447 MEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLE 502 + + E +SD I N+A +KL GY E+ + + + Sbjct: 120 LSQNEAKFYEFAERSSDLIYRYEFTPTPGFTHVNKASTKLVGYTPEEHYLDPQLAVKIIH 179 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558 + Y+ K+ +++ + + + Sbjct: 180 PDDKQRFLDYIE----GKTPIDKPIQVRWIHKDGQVVWIEQRNTPVYDRNSDLIALEGIG 235 Query: 559 HDISEWKQEKNKLSHAKKIAEK 580 DI++ K + + H K + Sbjct: 236 RDITDIKNAQKREEHIKNVLLA 257 >gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9] gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9] Length = 1205 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 110/643 (17%), Positives = 214/643 (33%), Gaps = 32/643 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 ++ + A + L E+ S ++ + + Sbjct: 158 TLDDTRSQLVAAEHSYREVIDSLSEVVCRIDSHGYWQF-LNPAWETVSGYPAALSLGHSW 216 Query: 245 EYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 H D ++ + L+ + + + + + + Sbjct: 217 LARWHPADQVQAQIRFADLIAGAVEVCRFDVRCIAADGSLRWLSVHLRPMHGSDCQVSGC 276 Query: 303 LSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357 + + A D + VD ++ L N L Y Sbjct: 277 VGTLTDVTETRLAEAELDRTRGQLADAVDSLDAGLLMFDAEDRLVLCNRKLFEL--YPDW 334 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTF 415 G ++S M + A + Sbjct: 335 TAHLRPGTTLESFLQAQISLGGPQAMGM------SEEAFRQYKLAQYRDGCKGQIEPFAR 388 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + + + + + + + + +E+ S G+ + + Sbjct: 389 GWLQVDSSRTRDGGMVSLHADISEYKALEAALRLSEERFKLAVESASLGLWDWDLVNGDM 448 Query: 476 STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + + + G P + + + L + L + Sbjct: 449 YGSELLYRTTGQPHPVDTGVRRDWFDLVHPADLPHSRAALVQHLKQQTP-VFDSEIRIRD 507 Query: 534 KEEKLLSLRI-----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + +R+ + + T+ DI K + + AK+ AE+ S KSDF Sbjct: 508 QSGQYRWVRVCGRVVTRQASGRALRMIGTLADIEARKASEAAILSAKEAAEEASRAKSDF 567 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ I+G + + EY + +D S L+L ++ND+LD S Sbjct: 568 LANMSHEIRTPMNGILGMT----RLCLATELSEEQREYLDMVDSSAQLLLTVINDILDFS 623 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707 KIE+GK+ L SL E V + + + L A EK + I ++ AD ++Q+ Sbjct: 624 KIEAGKLELSATDFSLRELVRDTLQPLALKAGEKGLEILCDIPPSLADSRHADATRLRQV 683 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+L NA+ FT G ++ + ++ + VRDTG+G++ L + + F Q +S Sbjct: 684 LGNLLGNAVKFTEVG-EVELQVREQADGLLRFSVRDTGIGISREGLAQVFESFSQADSSI 742 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLGL ++ +V G + S G+ PL Sbjct: 743 SRRYGGTGLGLTISSRLVGMMGGTLQVESEAGLGSCFHFAVPL 785 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 30/375 (8%), Positives = 82/375 (21%), Gaps = 15/375 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID+HGY + ++ G A +G L + Sbjct: 186 RIDSHGYWQFLNPAWETVSGYPAALSLGHSWLARWHPADQVQAQIRFADLIAGAVEVCRF 245 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + I + + P++ + + SG G + A R + + Sbjct: 246 DVRCIAADGSLRWLSVHLRPMHGSDCQVSGC--VGTLTDVTETRLAEAELDRTRGQLADA 303 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + L + T + + + Sbjct: 304 VDSLDAGLLMFDAEDRLVLCNRKLFELYPDWTAHLRPGTTLESFLQAQISLGGPQAMGMS 363 Query: 266 ESSLPEQEDFHTINL-------NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 E + + + + Q + + + + +L A Sbjct: 364 EEAFRQYKLAQYRDGCKGQIEPFARGWLQVDSSRTRDGGMVSLHADISEYKALEAALRLS 423 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E V+ + + + L + L + + G+ + Sbjct: 424 EERFKLAVESASLGLWDWD---LVNGDMYGSELLYRTTGQPHPVDTGVRRDWFDLVHPAD 480 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKANQFPENMPQNGIEPED 437 L + + I+ + + G + Sbjct: 481 LPHSRAALVQHLKQQTPVFDSEIRIRDQSGQYRWVRVCGRVVTRQASGRALRMIGTLADI 540 Query: 438 VDTRINKRKMEIEVM 452 + ++ + Sbjct: 541 EARKASEAAILSAKE 555 >gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC 700345] Length = 1186 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 102/497 (20%), Positives = 197/497 (39%), Gaps = 19/497 (3%) Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + F V G + NP+ L Y + I L + + D Sbjct: 232 RLNAILQTAVDGFVVVDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSNERNMHDEY 291 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 L +D + L + + + + + + G+ + D Sbjct: 292 IQH--YLKSADDKTVGKGRELLAQKKDGS---LFSIELSISKMRIDDEVLFLGLVKDLSD 346 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + + L + LE + D + I+ G I N A LF + E ++ + Sbjct: 347 VKCAQAAAQRTESILLATLEGSKDALVTIDTSGAIQEVNDAACLLFKFHSEQMIGQRLEE 406 Query: 500 -FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYS- 555 + ++ L E + ++ T + + +++ + + + Sbjct: 407 VLFRADERDCFHNILEEYRATGEGLAVKHSTQMKATRSDGEKVAIELTLIPVQLGQEMLL 466 Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DIS + + +L AK+ AE+ S KS FLA +SHEIR+PL A++G E+I Sbjct: 467 TAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGSVELILEST 526 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 N YA+ +G +L +ND+LD SKIE+G++ L S + ++ + + Sbjct: 527 L----NKEQRIYADTAKEAGTALLSTINDILDFSKIEAGQIVLEESAFSPAKLATQVLQV 582 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + A +K I + N+P ++ D + ++Q+ N++ NAI F+ GG + I Sbjct: 583 LSPKAQDKGIALAIYVNRNVPESLIGDGQRLRQVLHNLVDNAIKFSF-GGCVAIEMWLAD 641 Query: 734 NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 +E L ++ D G+G++ + F Q+ ++ GTGLGL + ++ G Sbjct: 642 VDEARLCCKISDQGIGISEESQLTLFEEFSQVHDTHNTNYSGTGLGLAICAELIAQMGGH 701 Query: 792 FYIFSTPAKGTLIEIIF 808 + S +G+ Sbjct: 702 IGVDSQQGQGSCFSFDL 718 Score = 90.9 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 4/152 (2%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + + ++L +IL+ DG +++ +G+I N AVS+LFGY +++ + ++ + N Sbjct: 224 QALVSANVRLNAILQTAVDGFVVVDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSN 283 Query: 505 TPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHD 560 ++ + Y+ L +T+ + L K+ L S+ + I ++ + + D Sbjct: 284 ERNMHDEYIQHYLKSADDKTVGKGRELLAQKKDGSLFSIELSISKMRIDDEVLFLGLVKD 343 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +S+ K + + I D L + Sbjct: 344 LSDVKCAQAAAQRTESILLATLEGSKDALVTI 375 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 25/256 (9%), Positives = 66/256 (25%), Gaps = 18/256 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144 +D G ++E++ + + G ++IG + + + ++ I LK + Sbjct: 247 VDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSNERNMHDEYIQHYLKSADDKTVGK 306 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ + + ++ + I G+V +A +R + Sbjct: 307 GRELLAQKKDGSLFSIELSISKMRIDDE------VLFLGLVKDLSDVKCAQAAAQRTESI 360 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK----T 256 E K I + + E + D Sbjct: 361 LLATLEGSKDALVTIDTSGAIQEVNDAACLLFKFHSEQMIGQRLEEVLFRADERDCFHNI 420 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + T E ++ + + + + S ++ Sbjct: 421 LEEYRATGEGLAVKHSTQMKATRSDGEKVAIELTLIPVQLGQEMLLTAFIRDISRRMEYE 480 Query: 317 EGENLTPETVDKCPIP 332 L E ++ Sbjct: 481 TQLKLAKEQAEQGSEA 496 >gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 577 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 101/572 (17%), Positives = 195/572 (34%), Gaps = 37/572 (6%) Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L + L + G + ++ + + Sbjct: 24 RLTETAWAALVELARQRGISTSDLIEQWARGQFAFPSGPIGDDGEARPVGVGAALAVRPC 83 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 EGE + ++ FF Y N L + I + Sbjct: 84 DEQAEGE-QVSKILESITDAFFALDEHWCFTYLNRQAERLLSRSREELIGKNIWVE---- 138 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 +R+ + + + + + A Sbjct: 139 --FPEALGTTFDREYHRAVERQVRVGFEEFYAPLD----IWLAVRAYPTAKGLAVYFL-- 190 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + ++ + + + + +G NR + G +E Sbjct: 191 ----DIAERKRAEQALLASEQNFRFLADTIPQMVWTTRPDGYHDFFNRRWFEYTGMNLEQ 246 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ L + H L+ +E + L Sbjct: 247 TQGWGWSHLLHPHDLDKCLHLWKYSLATGEPYDIEYRFR-RASDGVYRWQLGRALPLRDP 305 Query: 552 SC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPL 600 + T DI + K+ + + +H A+ AE + K +FLA +SHE+RTPL Sbjct: 306 QGNILRWFGTCTDIDDQKRAEQERTHLLERERQARAEAEAANRAKDEFLAMLSHELRTPL 365 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 IIG++++++ G L + I+R+G L ++ DLLDIS+I GK ++ Sbjct: 366 NPIIGWTQMLRR---GNLTPEMQAKALETIERNGKLQNQLIEDLLDISRIIRGKFSIAPI 422 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHF 718 P+ L + AI V+ A +K +L+ + ++ AD ++Q+ N+L+NAI F Sbjct: 423 PIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADPTRLQQVIWNLLTNAIKF 482 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP GG++ + + + + VRD G+G+ L + F Q + + G GLGL Sbjct: 483 TPKGGRVEVDLA-GDSANLYVAVRDNGMGIAPEFLPYMFERFRQADSRSTRKEGGLGLGL 541 Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 + + +V+ + G S KG + + P Sbjct: 542 FIVRHIVELHGGMVQAESEGEGKGAVFTVELP 573 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 5/184 (2%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + + L SE F F + W GY + + G + Sbjct: 189 FLDIAERKRAEQALLASEQNFRFLADTIP-QMVWTTRPDGYHDFFNRRWFEYTGMNLEQT 247 Query: 114 IGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G + +D H+ L + + +Y ALP+ Sbjct: 248 QGWGWSHLLHPHDLDKCLHLWKYSLATGEPY-DIEYRFRRASDGVYRWQLGRALPLRDPQ 306 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 R FG L ++ + + + E + S + P Sbjct: 307 GNI--LRWFGTCTDIDDQKRAEQERTHLLERERQARAEAEAANRAKDEFLAMLSHELRTP 364 Query: 233 HLRM 236 + Sbjct: 365 LNPI 368 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 26/291 (8%), Positives = 64/291 (21%), Gaps = 22/291 (7%) Query: 39 SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEI 98 + P D E +V + T F + +D H + Sbjct: 57 AFPSGPIGDDGEARPVGVGAALAVRPCDEQAEGEQVSKILESITDAF-FALDEHWCFTYL 115 Query: 99 SEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157 + + + + ++IG + + L + ++RQ + P++ Sbjct: 116 NRQAERLLSRSREELIGKNIWVEFPEALGTTFDREYHRAVERQVRVGFEEFYAPLD---- 171 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 + + + A P +G + ++ F L + Sbjct: 172 -IWLAVRAYPT---------AKGLAVYFLDIAERKRAEQALLASEQNFRFLADTIPQMVW 221 Query: 217 VEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + L + H D L + E E Sbjct: 222 TTRPDGYHDFFNRRWFEYTGMNLEQTQGWGWSHLLHPHDLDKCLHLWKYSLATGEPYDIE 281 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + L++ + ++ Sbjct: 282 YRFRRASDGVYRWQLGRALPLRDPQGNILRWFGTCTDIDDQKRAEQERTHL 332 >gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 577 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 170/362 (46%), Gaps = 23/362 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 ++ +L S++E G+ +I+ +G +L NR ++F + + + V + V Sbjct: 235 MQRARLESLIEYMGAGLMLIDEKGYVLLVNRTYREMFNIYGQSNGQLYYRVLPNEKMSQV 294 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + + ++ T + K ++ +DI+E K+ + Sbjct: 295 IEDVYLTEKPNRKQSSVRFGLNSRTFMVSAAPIF---GKNGRVQGTTVVFNDITEIKKLE 351 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YA 627 + DF+A VSHE++TPLT+I GF+E + + G P E + Sbjct: 352 --------------QMRKDFVANVSHELKTPLTSIKGFAETLLD---GAQDVPEIREQFL 394 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I + +V DLL++S++E L V + + E +L+Q A EK++ I Sbjct: 395 NIIHDESERMQTLVEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIH 454 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + I ADL +KQ+ +N+++NA+++TP+GG + IS E V+LR++D G+G Sbjct: 455 LETEEEV-FIRADLNRLKQVVVNLVANALNYTPNGGNVWISLE-DGEEAVMLRIKDDGIG 512 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E+++ + F ++ ++ GTGLGL + K ++D + G + S +GT I Sbjct: 513 IHPKEMQRIFERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIR 572 Query: 808 FP 809 P Sbjct: 573 LP 574 >gi|188579381|ref|YP_001922826.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342879|gb|ACB78291.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 1050 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 111/789 (14%), Positives = 220/789 (27%), Gaps = 55/789 (6%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 + + + +SE F + W D HG + S + G + Sbjct: 149 TNETTARVLGDRALRESEEHFRQTVELNP-QVPWTADPHGNIISYSHRWLELTGQAPGEP 207 Query: 114 IGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 G ++P L + I T Y A P Sbjct: 208 DGAGWTKALHPEDLEPTMAAFAVALSSGDPV-DIDYRIRIAATGEYRWQRARAHPRRDEA 266 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 R +G+V A +R +++ + E + H + + I ++ S Sbjct: 267 GTII--RWYGVVEDVHDRKIAEAALRRSEEELRLVVESARDHVILTTDTDGIITRWSAGA 324 Query: 233 HLRM---KNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTK-- 285 + + + + T+ + E +H + Sbjct: 325 QAVLGWSPEEAVGKPAVITFTPEDRDRGADLREMATAARNGCAGDERWHVAKDGRRVFLN 384 Query: 286 ----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGN 340 E D P+ FV Sbjct: 385 GSSHPLPPDPQGRPRGFLKLARDETGRIRAEEALRASEVQLRLVADALPLLVSFVDRSLT 444 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 +AN ++ K + + + + + L Sbjct: 445 YRFANAAYRDWFDRKPEEVVGRT-------IPDLVDEAGLRARLPYIERALAGTPVRTDL 497 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 W + + + R + + E +L E Sbjct: 498 -PWPWPDGRRRIADIRYEPRRDARGAVDGFYVFVQDVTAQRDAEAGLAAERDRL---WEL 553 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + D + + EG +L + + + L G+ E +L +P+ + V+ L ++ + Sbjct: 554 SEDLLVNADYEGHLLRISPSWTILLGHDAETLLTRPYGEIVHPEDFPVVMEALLDMRTTG 613 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 +E +E + + P + DI+ K + + ++ + Sbjct: 614 RPVRVENRV--RAADETWRWIAWKLAPEPGGERLTGVGRDITAEKAAAEEKARLEEQLRQ 671 Query: 581 ES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++H+ L I G E + R Y + + Sbjct: 672 SQKMEAVGQLTGGIAHDFNNLLAGISGSLE-LMQTRMSQGRLKDIDRYMSAAQGASKRAA 730 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 + + LL S+ + L +P ++ V L++ I + A+ + L Sbjct: 731 ALTHRLLAFSR----RQTLDPKPTDVNVLVRGMEELIR-RTVGPAIAVEVVGASGLWPAL 785 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------------SNEEVILRVRDTG 745 D ++ LN+ NA P G+I + T + + + L V DTG Sbjct: 786 VDPPQLENALLNLCINARDAMPERGRITVETANRWLDEHAARKHDIPPGQYLSLCVTDTG 845 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 GM+ + KA PF G+GTGLGL + + G+ I+S GT + Sbjct: 846 TGMSPEVVAKAFDPFFTTKP----IGQGTGLGLSMIYGFAKQSGGQVRIYSEVGLGTTVC 901 Query: 806 IIFPLYDTS 814 + P Y + Sbjct: 902 LYLPRYHGA 910 Score = 153 bits (387), Expect = 1e-34, Method: Composition-based stats. Identities = 37/503 (7%), Positives = 122/503 (24%), Gaps = 28/503 (5%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IEGT 155 ++ +G +G R V I D + + + W + Sbjct: 64 FNDTYFPLLGPRLPWAMGERFDVVWADAWSQAKPIIDDAFAGR-SRRFEDMPWKLGTDRG 122 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + + + +G F + + ++ F E+ Sbjct: 123 PADTWFSFSYSRVLDGDGSVAGL--FIFTNETTARVLGDRALRESEEHFRQTVELNPQVP 180 Query: 216 SVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 +I S L + + A + L+ + S P Sbjct: 181 WTADPHGNIISYSHRWLELTGQAPGEPDGAGWTKALHPEDLEPTMAAFAVALSSGDPVDI 240 Query: 274 DFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETV 326 D+ ++ ++ + + + A E V Sbjct: 241 DYRIRIAATGEYRWQRARAHPRRDEAGTIIRWYGVVEDVHDRKIAEAALRRSEEELRLVV 300 Query: 327 DKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + + + G + + + + + + ++ ++ + Sbjct: 301 ESARDHVILTTDTDGIITRWSAGAQAVLGWSPEEAVGKPAVIT--FTPEDRDRGADLREM 358 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + + + ++ + Sbjct: 359 ATAARNGCAGDERWHVA---KDGRRVFLNGSSHPLPPDPQGRPRGFLKLARDETGRIRAE 415 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + +QL + +A ++ ++R N A F E+++ + +++ Sbjct: 416 EALRASEVQLRLVADALPLLVSFVDRSLTYRFANAAYRDWFDRKPEEVVGRTIPDLVDEA 475 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560 Y+ L+ + + + I + + + + + D Sbjct: 476 GLRARLPYIERALAG---TPVRTDLPWPWPDGRRRIADIRYEPRRDARGAVDGFYVFVQD 532 Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583 ++ + + L+ + + S Sbjct: 533 VTAQRDAEAGLAAERDRLWELSE 555 >gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 607 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 165/370 (44%), Gaps = 24/370 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +++ E +L +I+ +DGI +EG IL N ++ + + F + Sbjct: 251 QEVSSEKQKLDTIITYMADGIIAATKEGEILHVNPKAMEMLNIEEGQLAPRNFNEIFKPY 310 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDIS 562 YL E+ Q + ++ +L L + D++ Sbjct: 311 DEEFEMDYLLEMSENQTGQR-----MLYVEDGVILEASYAPFINENGALGGIILLLQDVT 365 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 ++ + + + +F+A VSHE++TPLT I ++E + + Sbjct: 366 SAQKLE--------------NMRKEFVANVSHELKTPLTTIKSYTETLLDGVL--ENTEL 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + +D + +V DLL +S ++ K N + + V+L+E + +I + + A K Sbjct: 410 ATSFLQVVDGEAERMARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNK 469 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I T + I AD ++Q+ LNILSN+I +TP GG+II+ V L++R Sbjct: 470 AQEIITHLQDEPVHIYADKDRIEQVILNILSNSIKYTPEGGRIIVDL-IVDEGVVTLKIR 528 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ ++ + + F ++ ++ GTGLGL +AK +++A+ G IFS GT Sbjct: 529 DTGIGIPKEDIARIFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGT 588 Query: 803 LIEIIFPLYD 812 + P+ + Sbjct: 589 EVHTKLPVTE 598 >gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 988 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 122/703 (17%), Positives = 237/703 (33%), Gaps = 75/703 (10%) Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 P+ S + E G R +V + ++N ++ + + + + + Sbjct: 158 APVRS-DGERGGERIGEVVVIIDLENFLQSWKRTA-----SIAPSDGYFHIINAQGKVLA 211 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI------- 278 S S P M + + + + + D+ + Sbjct: 212 SWNSEAPPDNMLSPGKQNIFHQPEGQLIRFASRDRHTSLGIWFPIPSTDWRILMAVNENK 271 Query: 279 -NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + T+ + L SL+ E + Sbjct: 272 ILGPANILRDGTLTISGATGLLLLLLVWVLLSSLTRQIREKNLQLDAISSHLLGGLLITR 331 Query: 338 HGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + YAN +L + Y + + + N ++ + S + Sbjct: 332 LDRSFTILYANDGYLNMVGYTRSQ-LRKEKRNAAVSLCASEERNATMQAIFSQLSQNGML 390 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK---------- 444 + RL + + A+ + + I + + + + Sbjct: 391 SLEHRLQ--RRDGTRLWALIRGRQVNDPELGQIGVWVII--DVTEQKETQLAFERQSCEL 446 Query: 445 ----RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +++ +L ++++ S + + E ++S N V ++ G+P + Sbjct: 447 ETLVQQVSASENRLKFLVDSASIPLWSTDLETGLISYNEHVCRMLGWPEGVLHMTLPDFL 506 Query: 501 L--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCY 554 L + + + + D TLE + + I L + Sbjct: 507 LRCHPDDVEHVRNVFESFSAEDAGGTLEYEYRVRDGNGNWRWILVKGQKAINPLTHKAER 566 Query: 555 SLTMHDISEWKQ-------------------------EKNKLSHAKKIAEKESSHKSDFL 589 + D KQ +L +++ A + + KS+FL Sbjct: 567 VGIVIDNHARKQEALDTLQRAAELEAQVQTRTAELAARNAELLKSQQEALEATRAKSEFL 626 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ IIG + + + +Y ID + +L I+ND+LD SK Sbjct: 627 ATMSHEIRTPMNGIIGLTYLALQRECPAA----IADYLAKIDVTAKTLLRIINDILDFSK 682 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 +ESGKM+ P +L E + + + EK + +R +P+ ++ D + QI Sbjct: 683 VESGKMDFEEIPFTLSEVLDNTLQMFTHAVREKGLSLRFDVGEGVPQSLVGDPTRLGQIL 742 Query: 709 LNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPN 765 LN++ NA+ FT G + + T + V VRDTG+G+ +L +PF Q Sbjct: 743 LNLVGNAMKFTHEGSVTLFVRCVETDQQTVTLGFAVRDTGIGIPADKLPSLFQPFIQADM 802 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S R GTGLGL +A+ +V G ++ S KG+ Sbjct: 803 SVSRRYGGTGLGLAIARVLVQHMGGTIHVRSVVGKGSTFSFTL 845 Score = 38.1 bits (87), Expect = 6.1, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 19/229 (8%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPN 130 F+ D + W+ D L +E + + +G ++ M L D ++ Sbjct: 462 FLVDSASIPL---WSTDLETGLISYNEHVCRMLGWPEG-VLHMTLPDFLLRCHPDDVEHV 517 Query: 131 NHIGDLLKRQNTWYGKTTLWPI-EGTNLYVPIDLAAL----PIYSRNREFSGFRGFGIVH 185 ++ + ++ + + +G + I + P+ + G I + Sbjct: 518 RNVFESFSAEDAGGTLEYEYRVRDGNGNWRWILVKGQKAINPLTHKAERV----GIVIDN 573 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 R L + + + + + + + SQQ R K++ + Sbjct: 574 HARKQEALDTLQRAAE--LEAQVQTRTAELAARNAE-LLKSQQEALEATRAKSEFLATMS 630 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + L E + I++ T + + + Sbjct: 631 HEIRTPMNGIIGLTYLALQRECPAAIADYLAKIDVTAKTLLRIINDILD 679 >gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 915 Score = 349 bits (895), Expect = 1e-93, Method: Composition-based stats. Identities = 106/586 (18%), Positives = 218/586 (37%), Gaps = 24/586 (4%) Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 H +D E ++ T + + + ++ + Sbjct: 199 AQYHPEDQAAGWALAQRARETGEGYDRLMRLTRHGEERVTRTQARVERDETGAVVALFGV 258 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + +A + ET+ L A S + I G Sbjct: 259 FQDVTEAARATRAQTELVETL-GMAEALAGVGCWRLDVATGRVTW-----SDEVYRIHGK 312 Query: 366 LSTLLDAPKLSD----NNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFE 419 D + + + D A+ ++ + Sbjct: 313 TRETFDPSLHDAVSCYHPDDRAAVAASCDEAIRTGDAKEFQLRIVREDGEERIVRSRCRP 372 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + G+ + D+ +++++E + + + SD I +G+I + Sbjct: 373 ERDDAGVTTALFGVFQDVTDSVRSQKRIEASEARYRLLADRASDVIVTYGVDGLIQYISP 432 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKL 538 +V G D++ +P T + ++ E++ + ++ Sbjct: 433 SVEAATGIAPGDLVGRPVTHLILDEDVPALSQRFREMVRAGPGTVQPGVVYRARMASGEI 492 Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + + + DI+E K+ +++L A+ +AE + KS+FLA +SH Sbjct: 493 RWMEARTTLIRDDHGRVVQFHDVVRDINETKRLEDELIAARDVAEAAARSKSEFLANMSH 552 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPLT++IGFS ++++ P YA+ I S +L ++ND+LD SK+E+ Sbjct: 553 ELRTPLTSVIGFSGLLQSSEALPAAE---RRYADRIATSSEALLSVINDILDYSKLEADA 609 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 + L S+V+ K + + + A+++P I+ D ++Q+ LN LS Sbjct: 610 VGLDPVAFDPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRLRQVTLNFLS 669 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ FT +G +I + + + V D+G+G+ +++ + F Q S G Sbjct: 670 NAVKFTNTG-EIRLDVGSVD-GRMRVAVTDSGIGVAADKIDALFERFTQADASTTRVYGG 727 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 TGLGL + + +++ G+ S P G+ P+ + P D Sbjct: 728 TGLGLAICRRLIEMMGGEIGATSRPGHGSTFWFEVPMI-AAEPLDA 772 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 29/385 (7%), Positives = 81/385 (21%), Gaps = 18/385 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGKTTL 149 G ++ IS + G ++G + + + + + T Sbjct: 424 DGLIQYISPSVEAATGIAPGDLVGRPVTHLILDEDVPALSQRFREMVRAGPGTVQPGVVY 483 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + ++ I + F +V Sbjct: 484 RARMASGEIRWMEARTTLIRDDHGRVVQFH--DVVRDINETKRLEDELIAARDVAEAAAR 541 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 K + + +++ + + D + + + L + Sbjct: 542 SKSEFLANMSHELRTPLTSVIGFSGLLQSSEALPAAERRYADRIATSSEALLSVINDILD 601 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHPSLSAYFDEGENLT 322 + + + L+ S + + A + L Sbjct: 602 YSKLEADAVGLDPVAFDPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRLR 661 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNA 380 T++ + G + S + D + L + +D + Sbjct: 662 QVTLNFLSNAVKFTNTGEIRLDVGSVDGRMRVAVTDSGIGVAADKIDALFERFTQADAST 721 Query: 381 IKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + L R + S +P A + Sbjct: 722 TRVYGGTGLGLAICRRLIEMMGGEIGATSRPGHGSTFWFEVPMIAAEPLDAMVEDAVEGL 781 Query: 436 EDVDTRINKRKMEIEVMQLCSILEA 460 + + + +L+A Sbjct: 782 PEGLRVLMADDAPANRELVRVLLDA 806 >gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 456 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L +IL++ +G+ + IL N A K+ +D++ + Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRHILEI 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S ++ + ++ + K K+ + I+ + + + L + Sbjct: 161 VR---NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G + Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 259 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP+ + + + ID + ++ND+L +S+IE+ K E + LD + + + ++ Sbjct: 260 NPQARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKV 319 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I ++ I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 320 ARNKNITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G+G++ + + + F ++ S+ + GTGLGL + K +V++ G+ ++ S Sbjct: 379 VTVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 438 Query: 799 AKGTLIEIIF 808 +GT I F Sbjct: 439 GRGTKFIIKF 448 >gi|303248550|ref|ZP_07334807.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490080|gb|EFL50001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 695 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 101/679 (14%), Positives = 216/679 (31%), Gaps = 78/679 (11%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 A + + +++ + + Q + + L D+ Sbjct: 20 LAALWEAAGDIVVVIDAVGRLAAINESGLRLLGQTR---EQAVGSDWFDLALPPKDNDNA 76 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-- 311 + L Q L + G + + L+ Sbjct: 77 RILHRALLDGELSPKDLTQNQTIRTALGWRRLRWGLGLIDGPDGQPAMVLACGRDVDAQS 136 Query: 312 --SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 A E E + +D F+ G + AN + L Y + L Sbjct: 137 QLEAAVREKEAEYRDILDAANDAIFIQDPATGQILDANERAVSLYGYGVDE-------LR 189 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + +L + + Sbjct: 190 RITPDGLSAGTPPHTGAAALAKLDQARRGQPQLFEWLARDKTGRLFWTEVNLRHAVVRGQ 249 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG 486 + + + + +R + + + E + + + + I + A L+G Sbjct: 250 DRIIAVVRDITERKNAERALRESEKKFRQLAETIGEVFWLASPDVKRIFYVSPAYETLWG 309 Query: 487 YPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 P + P + + + ++T + S + + + + ++ Sbjct: 310 RPPVSLYASPQSWLDSVHPEDRDKVLDHMTRLASGPPARGIFPDFRVVRDDGSVRWVQAR 369 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD------------- 587 + S + T+ DI++ Q + +L + E ++ Sbjct: 370 YFPVIGDSGGVSRLAGTLEDITDRVQTRLELERVNERLEDMVRKRTQTLNRMNEELIHEV 429 Query: 588 --------------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 FLA +SHEIRTP+ I+G ++++ + Sbjct: 430 LERREAEASMARAKEAAEAASRAKSAFLANISHEIRTPMNGILGMAQILGQTGL----SD 485 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E+ I+ S + +L ++NDLLD S+IE+ ++ L E L ++ + + A E Sbjct: 486 DQKEFLKDIEGSASSLLALINDLLDFSRIEAERVELAHEAFGLRAVLASVEAAMGAPARE 545 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNE- 735 K + + + ++P +L D ++Q+ N++ NAI FT GG ++ + + Sbjct: 546 KGLELSVDISPDVPDMLLGDADRLRQVLTNLVGNAIKFTDHGGVVVQAQCVEACRPAEAI 605 Query: 736 ------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E++ V DTG+G+ + + + F Q S R GTGLGL + + +V Sbjct: 606 TRGMRQELLFSVSDTGIGILPEDTSRIFEAFTQADGSYTRRFGGTGLGLAITRRLVALMG 665 Query: 790 GKFYIFSTPAKGTLIEIIF 808 G+ + S P +G++ Sbjct: 666 GELGVDSVPDQGSVFTFSL 684 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 43/383 (11%), Positives = 106/383 (27%), Gaps = 18/383 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGK 146 IDA G L I+E + +G + +G D++ + N I LL + + Sbjct: 34 IDAVGRLAAINESGLRLLGQTREQAVGSDWFDLALPPKDNDNARILHRALLDGELSPKDL 93 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T I + + I + + + G + A + + ++ Sbjct: 94 TQNQTIRTALGWRRLRWGLGLIDGPDGQPAMVLACG--RDVDAQSQLEAAVREKEAEYRD 151 Query: 207 LHEIKKGHSSVEKEK-YDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + ++ I L +++ +T T L Sbjct: 152 ILDAANDAIFIQDPATGQILDANERAVSLYGYGVDELRRITPDGLSAGTPPHTGAAALAK 211 Query: 264 SEESSLPEQEDFHTIN----LNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 +++ + + F + + + ++ + + E Sbjct: 212 LDQARRGQPQLFEWLARDKTGRLFWTEVNLRHAVVRGQDRIIAVVRDITERKNAERALRE 271 Query: 318 GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + + F++ S +FY +P++ L V LD+ Sbjct: 272 SEKKFRQLAETIGEVFWLASPDVKRIFYVSPAYETLWGRPPVSLYASPQSW---LDSVHP 328 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D + + M + + + + + F G Sbjct: 329 EDRDKVLDHMTRLASGPPARGIFPDFRVVRDDGSVRWVQARYFPVIGDSGGVSRLAGTLE 388 Query: 436 EDVDTRINKRKMEIEVMQLCSIL 458 + D + ++E +L ++ Sbjct: 389 DITDRVQTRLELERVNERLEDMV 411 >gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 740 Score = 348 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 188/371 (50%), Gaps = 9/371 (2%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + +++++ + + +L++ ++ + ++ E I+ N+A + +E + Sbjct: 351 LAEQELKAQAREKKVLLDSLNELVVFVSPELKIIWANKAALEYMNMDLESAMGVCLKATP 410 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559 + P V YL I + + +++ E + K+ K+ + T Sbjct: 411 GISGPLVEFMYLEHIFTSEEKKSGEF----TAKDGKVWFFQATPVTDDQGKIIGVLQTCR 466 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + L K++AE + KS+FLA +SHE+RTPL +IIGFS+++ + +G L Sbjct: 467 DVTERKEAEK-LLQEKQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYGDL- 524 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + ++ I RSG +L+++ND+LD+SK+E+GK+ L ++ L ++ +L+ A Sbjct: 525 NEKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLSPIA 584 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + K I ++ ++ I AD QI N+L NAI F+ G + I + V + Sbjct: 585 DRKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEID-AKRKGDTVEI 643 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D G+G+ + K KPF QI + + +GTGLGL L K +V+ + G + S Sbjct: 644 TVKDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSRIG 703 Query: 800 KGTLIEIIFPL 810 +G+ P+ Sbjct: 704 EGSTFAFTIPI 714 >gi|312886915|ref|ZP_07746520.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311300599|gb|EFQ77663.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 766 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 106/585 (18%), Positives = 209/585 (35%), Gaps = 33/585 (5%) Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-----LS 304 + + E + F N + + ++ EY ++ Sbjct: 59 LRQFRIIFARHVQSGGEIPFAHEIRFRHKNGSTVFILLTGKVQKFTAEGKPEYMLGNHIN 118 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363 + T + + + + + D E A Sbjct: 119 LTAQKLAEKELKRTRDFLERTSEVAMVGGWELDMLHQKVTWSAVTRQIFGVDK--DFEPA 176 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G S N ++ + L I +L T + Sbjct: 177 TGTSAFFFREGKDRNLLLEAFHKAITTGE--PYDLELQIITATG--ALKWTRTVGHPEFE 232 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + GI + + + + + QL + ++ + IA++++ ++ + Sbjct: 233 DGKCIRIYGIFQDITIRKTQEEALRQKQEQLETFIKYSPVAIAMMDKHFNYVAVSDVWVS 292 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + + +L + P + YL+ L ++ + E + L + Sbjct: 293 CYNLDMPTLLGRSHFEVF-PELPGIWMSYLSRCLRGEVIKKEEDSFFLINGRREWLRWEV 351 Query: 544 IIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + I+E KQ + L AK+ AE+ + KS FL+ +SHEIRTP+ Sbjct: 352 RPWYESAGTVGGIIMFTELITEKKQIQEALIKAKEDAEQAALIKSRFLSIMSHEIRTPMN 411 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +IGF+ ++ E N + S ++ I+ND+L+++KI++GK+ L Sbjct: 412 GVIGFTNLLLKNP-----REDQREALNVLKFSAQNLMVIINDVLNLNKIDAGKVELENIS 466 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 L E + + A EK + + F ++P D + Q+ N+++NAI FT Sbjct: 467 FDLYELLQNICRSQENDAKEKHLNLSVQFDYSLPFWFKGDPVRIGQVITNLVNNAIKFTA 526 Query: 721 SGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +G ++ IST E + V DTG+G+ + E + F Q + GTGL Sbjct: 527 AG-RVSISTALVGEHEGKMTIGFAVSDTGIGIPETKQEHIFELFSQAESDTTRIYGGTGL 585 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI-------IFPLYDTS 814 GL + K +++ + STP +G++ P+ +TS Sbjct: 586 GLTITKRLLELMGSNIQLKSTPGEGSIFYFDLELEKSTLPVEETS 630 >gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 771 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 128/706 (18%), Positives = 249/706 (35%), Gaps = 50/706 (7%) Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G V L A P S E G + + HE + Sbjct: 67 GRAQEVINTLRANPQISEA-EIFLRDGRLLARYSSRSKTALLTPSLKPDGLYLNHESAEL 125 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 S++ + + + +N + + L + Sbjct: 126 TQSLQDGAHLRLVMTLDEFNRQTRNVLWGFAAGVFVLLVTITLGLRAALQKII--ISPVS 183 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------ETVD 327 T+ Y + + + L + + + ++L +D Sbjct: 184 TLVETVEQVRTRADYSRRVPASGVDEVARLGQSFNAMMEVIKEREDDLHRLTLFQRTILD 243 Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE----------IAGGLSTLLDAPKLS 376 + G + N + L Y + + I L + +L Sbjct: 244 NAAYGIISTTTEGIVSSFNRAAECLLGYTAGEVIGKLTPVCWHDQEEISRRALQLSEELG 303 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + A + R +A I+ + + + + + G+ + Sbjct: 304 ETVAPGFEVFAVRLRRNLAEENEWTYIRKDGTR-VPVLLSVTALRGESDQVTGFVGLTYD 362 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + + + ++ I ++ +G IL+ N + GY +E+++ + Sbjct: 363 LTERKRVEEALRFSEARYRALHRDNPTMIFTLDAQGTILTVNTFGAIQLGYAMEELVGES 422 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 L + L + + K+ +LL + + + + + Sbjct: 423 VLKVLHSEDHNAAFEQLRLCVQHPT-SVYRRHFRKIRKDGELLWVDEVAQAVNDLNGSLN 481 Query: 554 YSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHE 595 + DI+E K+ + +L+ K ++ KS F+A SHE Sbjct: 482 ILVVCLDITERKKAEEELNRYKTHLETLVQERTAELERANVRLQELDRLKSMFIAATSHE 541 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AIIGF+ + G L N + + RS +L ++ D++DISKIE+GK+ Sbjct: 542 LRTPLNAIIGFTGMTLQGLSGEL-NEEQQDNLARVYRSAKHLLALITDIIDISKIEAGKI 600 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 ++ E L+E V EAI++V K + + + + AD + + Q +N+LSNA Sbjct: 601 SIFPEEFPLEELVDEAIAIVTPQLKGKSLSLERELPAAL-TVYADRKRLLQCLVNLLSNA 659 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 FT G +II+ S + L V+D+G+G+ +L + KPF ++ + +++ GTG Sbjct: 660 AKFTEKG-RIIV-AARESEGSIELSVKDSGIGIAPQDLPRLFKPFERLESHLRVQAGGTG 717 Query: 776 LGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHD 818 LGL L +V D G + S +G+ + P L P D Sbjct: 718 LGLYLTAKLVADVLRGTISVQSREGEGSTFTLSLPRDLRRVPEPPD 763 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 79/287 (27%), Gaps = 31/287 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNN---HIG 134 G + + +G A ++IG R +S+ L Sbjct: 255 EGIVSSFNRAAECLLGYTAGEVIGKLTPVCWHDQEEISRRALQLSEELGETVAPGFEVFA 314 Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 L+R + T +GT VP+ L+ + + + +GF G+ + Sbjct: 315 VRLRRNLAEENEWTYIRKDGT--RVPVLLSVTALRGESDQVTGF--VGLTYDLTERKRVE 370 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKD 251 + + ++ LH + I + + M+ V H + Sbjct: 371 EALRFSEARYRALHRDNPTMIFTLDAQGTILTVNTFGAIQLGYAMEELVGESVLKVLHSE 430 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 D + L + + + F I + + + + + L Sbjct: 431 DHNAAFEQLRLCVQHPTSVYRRHFRKIRKDGELLWVDEVAQAVNDLNGSLN-ILVVCLDI 489 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 + +E N ++ L AN L + KS Sbjct: 490 TERKKAEEELNRYKTHLETLVQ----ERTAELERANVRLQELDRLKS 532 Score = 45.4 bits (106), Expect = 0.041, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 61/241 (25%), Gaps = 11/241 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +DA G + ++ +G +++G + V + L + T Sbjct: 391 IFTLDAQGTILTVNTFGAIQLGYAMEELVGESVLKVLHSEDHNAAFEQLRLCVQHPTSVY 450 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + I + +D A + N + R Sbjct: 451 RRHFRKIRKDGELLWVDEVAQAVNDLNGSL---NILVVCLDITERKKAEEELNRYKTHLE 507 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L +++ + +E+ + R+K+ + T + + Sbjct: 508 TL--VQERTAELERANVRLQELD------RLKSMFIAATSHELRTPLNAIIGFTGMTLQG 559 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S +E + + K + + S + +E + Sbjct: 560 LSGELNEEQQDNLARVYRSAKHLLALITDIIDISKIEAGKISIFPEEFPLEELVDEAIAI 619 Query: 326 V 326 V Sbjct: 620 V 620 >gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] Length = 595 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ NR+G IL TN + + + Sbjct: 250 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEIIAP-L 306 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +N ++ + Q++E G T + L + + D++E + Sbjct: 307 PPQVNELFIRVVREEKEQSIELSLQGRT----WVILMTPLYDKTNVRGAVAVLRDMTEER 362 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + + E Sbjct: 363 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKE 406 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L++E V L + I Q A EK+I Sbjct: 407 MAKVIYDESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQID 466 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F N RI D ++Q+ N++ NAI T G + I + V + V+D+G Sbjct: 467 LSAEFDNEDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKI-IAEQNGGGVTIHVQDSG 525 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 526 TGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFT 585 Query: 806 IIFP 809 P Sbjct: 586 FHLP 589 >gi|292492033|ref|YP_003527472.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291580628|gb|ADE15085.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 788 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 110/586 (18%), Positives = 222/586 (37%), Gaps = 30/586 (5%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 R+ +L + D + ++E + + + + + T + Sbjct: 60 RIHRLEEALKFVHPQDQDKVLATTQAAKQAKER-VEIRFRCRWPDGSIHWLLARGKTFYH 118 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFL 349 S + + +E + E + + ++ Y + + Sbjct: 119 PSGAPWFVAGTCQEITQLVKAEEALRRSEEMLQRVTDAASVLISYLDRKLRFQYVSSGYE 178 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + + ++DI+ L + A++ + + + L + Sbjct: 179 KRFQ-RPLEDIQGRYMWEIL----GKNAFAAVEEYVQRALKGEVVVYNKELPYDEIGPRY 233 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + I + ++R K+ QL +I+E+++D I + Sbjct: 234 VHVQYIPDITD----GHVLGFSAITIDLTESR----KLSERAAQLSAIVESSTDAILSQD 285 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 GII S N+ LFGY E+++ +P + + I + T Sbjct: 286 LNGIIQSWNQGAEHLFGYKAEEMIGQPIAPLIPSHRKKEEIQMRKRIKRGERVAPY--ET 343 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + K+ +++ + I L S + DI+E+K ++ +L ++ + K Sbjct: 344 VRLHKDGSEVTISLTISPLQDSQGRLIGASKIARDITEYKHQQEQLRRQAELLTETDRRK 403 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA ++HE+R PL I +++K P + + +R ++ +V DLL Sbjct: 404 DEFLATLAHELRNPLAPIANSLQILKQVGNNPEALEKA---VSISERQLQHLVHLVEDLL 460 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+S+I GK+ L EPV+LD + A+ + + + + + ADL + Sbjct: 461 DVSRITRGKIQLRKEPVTLDTIIKSALEISRSHIKAGEHTLCVEVPETQVLLQADLTRLA 520 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q N+L NA +TP GG I ++ N++V++ V+D G+G+ L + F Q Sbjct: 521 QAVSNLLINAAKYTPPGGHIKLTARCE-NQQVVIAVQDDGIGIAQELLPRIFDMFVQAER 579 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 G G+GLPL K +V+ + G+ S +G I PL Sbjct: 580 PGGYAPGGLGIGLPLVKGLVELHGGQAEAASPGLDQGCTFTIRLPL 625 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 12/247 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148 D +G ++ ++ G A +MIG + + + +KR +T Sbjct: 285 DLNGIIQSWNQGAEHLFGYKAEEMIGQPIAPLIPSHRKKEEIQMRKRIKRGERVAPYETV 344 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ + + + ++ P+ G I + +R + + Sbjct: 345 RLHKDGSEVTISLTIS--PLQDSQGRLIGASK--IARDITEYKHQQEQLRRQAELLTETD 400 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 K + + L++ +V + E + + + L+ E Sbjct: 401 RRKDEFLATLAHELRN-PLAPIANSLQILKQVGNNPEALEKAVSISERQLQHLVHLVEDL 459 Query: 269 LPEQEDFH---TINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLT 322 L + T + S+ + E+ P Sbjct: 460 LDVSRITRGKIQLRKEPVTLDTIIKSALEISRSHIKAGEHTLCVEVPETQVLLQADLTRL 519 Query: 323 PETVDKC 329 + V Sbjct: 520 AQAVSNL 526 Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 13/242 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147 +D + +S K + G + ++ + LK + Y K Sbjct: 164 LDRKLRFQYVSSGYEKRFQRPLEDIQGRYMWEILGKNAFAAVEEYVQRALKGEVVVYNKE 223 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206 + G + + +P + + GF I + +R ++ A + + + Sbjct: 224 LPYDEIGPRY---VHVQYIPDIT-DGHVLGFSAITIDLTESRKLSERAAQLSAIVESSTD 279 Query: 207 --LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L + G + + + ++ L + K+++ ++ Sbjct: 280 AILSQDLNGIIQSWNQGAEHLFGYKAEEMIGQP--IAPLIPSHRKKEEIQMRKRIKR--- 334 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E P + + ++ T LQ++ + + E E Sbjct: 335 GERVAPYETVRLHKDGSEVTISLTISPLQDSQGRLIGASKIARDITEYKHQQEQLRRQAE 394 Query: 325 TV 326 + Sbjct: 395 LL 396 Score = 40.4 bits (93), Expect = 1.5, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 52/154 (33%), Gaps = 8/154 (5%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPS 507 + + A+ G+ + + + + + +LFG P + + F+ Sbjct: 18 QGEDYRTAFAASEIGVFRWHFQSDRMEWDETLYQLFGIPKGQRIHRLEEALKFVHPQDQD 77 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + R +E + + L K S + T +I++ Sbjct: 78 KVLATTQAAKQAKER--VEIRFRCRWPDGSIHWLLARGKTFYHPSGAPWFVAGTCQEITQ 135 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + L ++++ ++ + S ++ + ++R Sbjct: 136 LVKAEEALRRSEEMLQRVTDAASVLISYLDRKLR 169 >gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus HTCC2516] gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus HTCC2516] Length = 1053 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 126/777 (16%), Positives = 271/777 (34%), Gaps = 46/777 (5%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 + + L + + P +D ++EI +E Sbjct: 192 RPRYSLDAPVDTPEERLAALRGWNLGP----------LDPQVLVQEIEDEFAGAFRVRID 241 Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLL--KRQN---TWYGKTTLWPIEGTNLYVPIDLAAL 166 + + + P+ + +++ +N TW T + + + +A + Sbjct: 242 DAGARTRLADTTLPDVQPDFRLTEVVPVLGRNWAFTWESTPTFEAMNARSTPWIVLVAGV 301 Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 + + +G + V R+ + + + + + + + S Sbjct: 302 AVTALVAALAGVLARREIAVRRLVEERTRELEARAEMNRSFLDNRVVAMLIVDADGSVLS 361 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 VS L + S + +++ Sbjct: 362 GNQAA-ARLFGYAVSDLKGVLLNNLIPGAIASIDWTLSTTQGVHRDGSTLYLDVQVNRW- 419 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345 +N++ + S DE E +++ I F + ++ + Sbjct: 420 ---TNAGDNARSTVLIRDVSEQTRTSRQLDEQEERFNRAINEAGIGVFDIDLESDVSVVS 476 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 S+L + + +E L ++ I Y + + +++ Sbjct: 477 NSWLRVMGLPADVTLENPQ---ALFRERVHPEDRPIIEAANYAHIDGHTDRTVTEYRVRF 533 Query: 406 NRENSLAMTFIPF-EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + M + ++ + G++ + D + + + L G Sbjct: 534 DDGTWRWMRSNAVVTERDEDGRALRLLGVQTDVTDRHEAQDALRRSEERFRKFLAQAPVG 593 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 +AI + +G L N A+ KL GY ++L F L ++ + + + E + Sbjct: 594 MAIFDGQGRFLGLNEAMVKLTGYSEAELLEMRFGDLLSKDDLAQIFDTVVETHGDG-ARG 652 Query: 525 LEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 S + + + S Y + + DISE ++ + Sbjct: 653 YTGEHQLSHRNGGHVWALLSVAWTFDADRGSDLYIVQLQDISERREIE------------ 700 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 KS+F+A VSHE+RTPLT++ G +++ L + + + ++ + Sbjct: 701 --RLKSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLR-LLDIAQSNTDRLIYL 757 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 VND+LD+ KI +G+++ H +P S +E + ++ + A ++ + + +LAD Sbjct: 758 VNDILDLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWRPQEPDRMVLAD 817 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + Q+ LN++SNA F+ +GG++ + EV+ V+D GVG++ KPF Sbjct: 818 AGRLNQVLLNLISNACKFSHAGGRVEVWFEVR-GAEVMFFVKDEGVGISATHRNSIFKPF 876 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 Q+ +S GTGLGL + K +V+ G+ ST +GT PL + + Sbjct: 877 SQVDSSDTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCPLAEPADAE 933 >gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 1183 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 118/660 (17%), Positives = 221/660 (33%), Gaps = 43/660 (6%) Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 LP R G +V N + + +R ++ L + ++ Sbjct: 129 LPQLQELRTLMVSIGDNVVGRNALVDRRLQQTERSRQQGLDLANLDNAVRTLL---ARKG 185 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + + + + +Y ++ + + + L + Sbjct: 186 TDADLAVVAQASDLLRQAHVSRDMDGLGEMRRRYETVSRRLAEMIDDPRITDSALRDAAR 245 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 + L A +EG +L T + Sbjct: 246 TAITLGSGPENVFELRTRGLMTDVRLIAANEEGRDLVARTSSVVGRIVSETEAAAIANER 305 Query: 346 PSFLLLT-------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + LT V + + L ++ + M + Sbjct: 306 RAGAALTTGRQVMMGIAVVTVLGPLLFVWMYLGRNIVNRLAGLASAMHRIVEGD------ 359 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + ++ +L +IL Sbjct: 360 ------------YHTKVEASGNDEIADMAGELVVFQRALAQLQDSTDALKESEGRLRTIL 407 Query: 459 EATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEI 516 + + +AI + IL N S+LFG +D F + + Sbjct: 408 DTSPLALAISRVSDNAILYVNPRWSELFGSRPDDSNGVDAASFYADPADRDRVVELVR-- 465 Query: 517 LSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + + + + ++ DI++ K++++ L+ A Sbjct: 466 ---GQGYLADYESRMRRADGSEFWAMMSAAAIDMDGEPAVCVSTADITKRKEQEDALAEA 522 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE S KS FLA +SHEIRTP+ ++ ++++++ E A I S Sbjct: 523 KQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLA----QEQKEMARVIRDSA 578 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+ND+LD SKIESGK+ L +SL + + L+ A+EK I + T + Sbjct: 579 TALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGLMTFIDPAL 638 Query: 695 PRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 P + L D ++QI N+ NA+ FT G + IS ++ V + DTG+G+ + + Sbjct: 639 PDLFLGDATRLRQIVTNLAGNAVKFTDKG-YVRISAEAAADGHVRFTISDTGIGLNDEQQ 697 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 K +PF Q S R GTGLGL + + +V G+ + S +G+ PL Sbjct: 698 AKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDSQVGQGSSFWFSLPLEQV 757 Score = 38.1 bits (87), Expect = 6.8, Method: Composition-based stats. Identities = 22/236 (9%), Positives = 65/236 (27%), Gaps = 21/236 (8%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG-KTTLWP 151 + ++ + G+ G+ + + DP + + +L++ Q ++ + Sbjct: 424 ILYVNPRWSELFGSRPDDSNGVD----AASFYADPADRDRVVELVRGQGYLADYESRMRR 479 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ ++A I + E + + + + Sbjct: 480 ADGS--EFWAMMSAAAI-DMDGE----PAVCVSTADITKRKEQEDALAEAKQTAEDASQA 532 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 K + + P + + A + + T+ + + Sbjct: 533 KSLFLATMSHEIRT------PMNGVLTMAQLLEDMPLAQEQKEMARVIRDSATALLTIIN 586 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + DF I + + +L + + E L+ R + P+ Sbjct: 587 DILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGLMTFIDPALPDLF 642 >gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC 11170] Length = 866 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 113/547 (20%), Positives = 203/547 (37%), Gaps = 32/547 (5%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 + + G R +S + P + P P Sbjct: 193 RPGEGRGPSSEAIGRTDELGDLFRAVEDLRRRIEMSLLEAATQARFPS---ENPNPVIRT 249 Query: 337 -SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G L YAN S L + + + + A + + T I Sbjct: 250 SDSGGLLYANASARLRPGFLDGETL------HPTIIALVRETTGRGEIMTSEIRLGTRIY 303 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 L + + + + + + E R + + Sbjct: 304 L---LTAVPITHDRYVNIYASDVTDRVKAEIALRSLNESLE-AQVLTRTRDLAESEARTR 359 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I+ DG+ +++ +G I N A ++FGY +++ + + + + Sbjct: 360 AIIATMVDGLIVMDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMSAEDAAGHAEPFGL 419 Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF--------SSCYSLTMHDISEWK 565 L L + +G K L + I LP ++ + DIS+ Sbjct: 420 HLWDGRSPLLNGTRKVIGRRKNGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISDQI 479 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + ++ L K AE + KSDFLA +SHE+RTPL ++G ++++ + + Sbjct: 480 RHESDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDTPL----DAEQRR 535 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I S +L I+ND+LD+SKIE+G ++L P + +L++ A +K I Sbjct: 536 YTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPFDPATLLEGVRTLMEGPARDKAIA 595 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 +RTS P + D ++QI LN+ +N + FT G + + + + V DT Sbjct: 596 LRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEKGS-LTLRLKAGTGGALRFEVEDT 654 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + F Q+ S R G+GLGL + + +V G+ STP G+L Sbjct: 655 GIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSICRRLVGLMGGRLGFDSTPGVGSLF 714 Query: 805 EII--FP 809 P Sbjct: 715 WFEVDLP 721 Score = 45.0 bits (105), Expect = 0.050, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 67/240 (27%), Gaps = 8/240 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW--- 143 +D G + + + G +++G + + L ++ Sbjct: 372 MDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMSAEDAAGHAEPFGLHLWDGRSPLLNG 431 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 K G + + + ++ALP + G+V + +++ + Sbjct: 432 TRKVIGRRKNGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISDQIRHESDLRKVKDE 491 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K +V + + + + + + E ++ Sbjct: 492 AEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDTPLDAEQRRYTRTIAISAEALLVII 551 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 ++ L + E H L+ ++ TL + E + +L + + Sbjct: 552 NDILDLSKIEAGH---LDLESRPFDPATLLEGVRTLMEGPARDKAIALRTSIEGAKPPLR 608 >gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus CB15] gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus NA1000] Length = 842 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 143/718 (19%), Positives = 265/718 (36%), Gaps = 52/718 (7%) Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + G+T G + + A R R F G V Sbjct: 136 DGADWKAAALAAGASGRTNWVGSVGETGRLYV--ATTTSLDRARAFVIASGDASRLVADP 193 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + D K + +E + + + ++ + + Sbjct: 194 EKGESGALALPDGKLIAARGRGVQGAGALREAFALSIEDLGDGPAAVRGQAADGALLDVA 253 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 V + + + S+ + G + R Sbjct: 254 VRPVAQGALLAVAAAPTRSVANLDRQVMEGAFSLLVPLGVGIALALLL----MIQSRKAE 309 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 F + E V+ + + +G+ Y + + + + L Sbjct: 310 VAHREFIDSERRFRLAVEAARCGIWEWDLNGDQVYLSDVTGAMFGWGGGGVVSGQDLLER 369 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + ++ + + S R+ + + + Sbjct: 370 ISIDHR----ERVRQALANAAMYGAFDVSFRVPASEQGARSLWIDARGQGFGKPGSEGHA 425 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 G+ + + RI + + + +L +E+ S+ + +R+G +L NR +F Sbjct: 426 RIIGVALDVTEERIAQARAQAAENRLRDAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLE 485 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + + KP E N + + + E + + + + + ++ Sbjct: 486 PKIL--KPGAARAEVNRFAALAIKQDHPAPDGAKGVREAEMM----DGRWIQIS---ERR 536 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKI----------------------------AEK 580 +T DI+ K ++ ++ AE Sbjct: 537 TAEGGLVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAES 596 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG +L + Sbjct: 597 ANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLAL 656 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +ND+LD+SKIE+GKMNL FE + L++ +A+ LV+ A + + F +P I AD Sbjct: 657 INDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEAD 715 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAM 757 R+VKQ+ LN+LSNAI FTP G + + + + + + V DTG+G+ +L + Sbjct: 716 YRAVKQVLLNLLSNAIKFTPRAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLARLA 775 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 KPF Q+ + +GTGLGL L K+++ + G + STP +GT + P+ + Sbjct: 776 KPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVRHSDQ 833 >gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1333 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 108/594 (18%), Positives = 224/594 (37%), Gaps = 28/594 (4%) Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 P P + + + L L S L L Sbjct: 230 PHPFVYVSAALVVAAVQLPLWGAGLVVFTSSLAMSVVVGLGTVPAGQDPPLFASGWVTVL 289 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSF 348 L + E +++ + V G + +NP+ Sbjct: 290 PLLLTMLPPLLLAAAQARGRRDRHRLANSEATFRLAMERSALGMALVTIDGRILRSNPAL 349 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + Y + + A + L P+ + L S+ +A Sbjct: 350 QQMLGYGADEL---AQMRTRELRHPEDPELAGSGLQQLASSEGGRYSAE---RCYAHRDG 403 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + ++ + + + + R ++ L I + +A Sbjct: 404 SKVWVQLSAALVRDERGQVLYTLMQVDDVTERRDRLAALQASERFLRFIADNVPGMLAYW 463 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 +R+ + NRA + G+ + + ++ ++ +L+ + +Q Sbjct: 464 DRDERCVFANRAHIEWLGHDPTRPPQPRLADVIGAERYALSKPHIRAVLAGEPQQ---FE 520 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN-------KLSHAKKIA 578 + ++ L+ + + + + DI+E K + +L+ + A Sbjct: 521 RGHTARDGSLVDAWLQYVPDIEDGVVRGFFVQVSDITELKAAQRKLADANAELAARTRQA 580 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E ++ KS+FLA +SHEIRTP+ AI+G S +++N R NP + + + ++ Sbjct: 581 ESANAAKSEFLANMSHEIRTPMAAIVGLSHLLENSRL----NPDQQDLLRKMRGASKSLM 636 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 +++D+LD+SKIE+G++ + SL + + L+ L A+++ + + +P ++ Sbjct: 637 AVIDDVLDLSKIEAGELRIDRSAFSLQALLDDLRGLMALSAHDRTLELVMRCDAGLPDQL 696 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 DL ++Q+ N+LSNA+ FT G Q+ + + + VRD+G+G++ E Sbjct: 697 DGDLMRLRQVLNNLLSNALKFTTVGEVLLQVALVARQSGRLRLRFTVRDSGIGISAAEQA 756 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +PF Q+ S R GTGLGL +++ +V G + S P KG+ Sbjct: 757 RLFRPFAQVDASTTRRYGGTGLGLVISRRLVRLMGGDISLRSAPGKGSEFSFDL 810 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 37/384 (9%), Positives = 94/384 (24%), Gaps = 26/384 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTTL 149 G + + L + +G A ++ MR ++ + L + + Sbjct: 339 DGRILRSNPALQQMLGYGADELAQMRTRELRHPEDPELAGSGLQQLASSEGGRYSAERCY 398 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G+ V + L+A + + V D A + ++ + + Sbjct: 399 AHRDGS--KVWVQLSAALVRDERGQV--LYTLMQVDDVTERRDRLAALQASERFLRFIAD 454 Query: 210 IKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 G + + + K + Sbjct: 455 NVPGMLAYWDRDERCVFANRAHIEWLGHDPTRPPQPRLADVIGAERYALSKPHIRAVLAG 514 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + E HT + + + + Sbjct: 515 EPQQFERGHTARDGSLVDAWLQYVPDIEDGVVRGFFVQVSDITELKAAQRKLADANAELA 574 Query: 328 KCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 AN + FL ++ + GLS LL+ +L+ + Sbjct: 575 A--------RTRQAESANAAKSEFLANMSHEIRTPMAAIVGLSHLLENSRLNPDQQDLLR 626 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + ++ +A + + L + F + + D + Sbjct: 627 KMRGASKSLMAVIDDVLDLSKIEAGELRIDRSAFSLQALLDDLRGLMALSAHDRTLELVM 686 Query: 445 R-------KMEIEVMQLCSILEAT 461 R +++ ++M+L +L Sbjct: 687 RCDAGLPDQLDGDLMRLRQVLNNL 710 >gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 576 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 117/524 (22%), Positives = 206/524 (39%), Gaps = 46/524 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A + I ++ + + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 ASQAGLIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 EGTGLGL + K + + + G + S G + P+ Sbjct: 524 FEGTGLGLAMVKQLAELHGGCVAVASVKDLGARFVVWLPIRQPE 567 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 6/176 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLT 263 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLS 369 Score = 45.0 bits (105), Expect = 0.057, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312 >gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 114/566 (20%), Positives = 206/566 (36%), Gaps = 32/566 (5%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---- 304 + + + T G + +S + +YL Sbjct: 47 ESRLARMVAAREIRDMRRDAPAAAAAISRETRARVTVVLEGGEVVADSDIAPQYLGTLEN 106 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 H N P + ++G P V + N L L+ + +E A Sbjct: 107 HANRPEVRQALEQGGGAAVRYSATIKTPMLYVATVLNTTEGERGVLRLS--LPLTAVEKA 164 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L L+ + + ++ Y R + + T+ IP ++ Sbjct: 165 KQSIRTLLGASLAVSLVVALLLSYLLSRLTSRSLRTITTLATQLGRGDYGRRIPVITRDE 224 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E ++ + + + E +L +IL +G+ + + G + N A Sbjct: 225 VGELARVMNEMASQIERNLAR--ISAEKNRLDTILRGMGEGLMVSDAGGTVTLVNPAFLD 282 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 LFG R+ + ++ + +EK + Sbjct: 283 LFGLTQSVEGRQIIEIARFPELHETFRAVVSSRSEH------VEEMTLPLGDEKQVLTHW 336 Query: 544 IIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + HDIS+ K+ + + DF+A VSHE+RTP+T Sbjct: 337 VPLMEEDELRGVVAVFHDISDLKRLEVV--------------RRDFVANVSHELRTPVTV 382 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I G++E + R + I + D++ DLL +S++ESG + L + Sbjct: 383 IKGYAEALAGG-LVEEDPERAGRFLEIICSHSERLADLIRDLLTLSQLESGGLQLELTQI 441 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 LD AVS A L++ A K I I S P +LAD ++Q+ +N++ NA+ +TP G Sbjct: 442 HLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVLINLMDNALKYTPPG 501 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G I +S ++ V + V DTG+G+ +L + + F ++ ++ GTGLGL + K Sbjct: 502 GTITLS-ADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDEGGTGLGLSIVK 560 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + G + S KGT Sbjct: 561 HIIQLHGGNITVESEHGKGTTFRFTL 586 Score = 37.7 bits (86), Expect = 9.2, Method: Composition-based stats. Identities = 31/323 (9%), Positives = 71/323 (21%), Gaps = 18/323 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA G + ++ G + G ++ +++ + + ++ ++ + Sbjct: 268 DAGGTVTLVNPAFLDLFGLT-QSVEGRQIIEIARFPEL--HETFRAVVSSRSEHV-EEMT 323 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 P+ + + P+ + E G + H + + SH Sbjct: 324 LPLGDEKQVLTHWV---PLMEED-ELRGV--VAVFHDISDLKRLEVVRRDFVANVSHELR 377 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + E + L LLT + Sbjct: 378 TPVTVIKG------YAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLSQLES 431 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + T G L+ + + + L ++ Sbjct: 432 GGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVLINLM 491 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 G S V + G+ + Sbjct: 492 DNALKYTPPGGTI--TLSADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDE 549 Query: 390 DRTCIAASARLHTIQWNRENSLA 412 T + S H IQ + N Sbjct: 550 GGTGLGLSIVKHIIQLHGGNITV 572 >gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 554 Score = 348 bits (894), Expect = 2e-93, Method: Composition-based stats. Identities = 89/576 (15%), Positives = 196/576 (34%), Gaps = 36/576 (6%) Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + + + + + EQ + ++ +Y Sbjct: 1 MQCTHPDDRQRVLAVWQRAVQTGGLYETEQRLRQSTTGAYRWFLMQAVPFKDAQGTILKY 60 Query: 303 LSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357 + ++ + E + P + S G + Y N + T Sbjct: 61 IGTCTDIEEQKQAEQRSKTSEENWRMLAETVPQLVWASSPDGRVEYWNQRWYAYTGSSIE 120 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + G S L + + + RL Q Sbjct: 121 HALGH--GWSQFLHPDEYQ--HTLTVWHHALEMGEPYEIEYRLKDGQAEG--YRWFLARG 174 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII-LS 476 ++ + + G + + + + + ++ +++++ GI + EG + + Sbjct: 175 MPVRDETGQIVKWFGTSTDIENQKRTEEALRQSQERIRALIDSNIIGIVSVEGEGEVLVE 234 Query: 477 TNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N A + GY ED+ + + E+ + LE + K Sbjct: 235 ANEAFLHMTGYIQEDVRSRTLNRVKITPLEHAPFFQRAIQEVNARGQHTPLETELVC--K 292 Query: 535 EEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + L + + + + D S K+ + + K DF+ S Sbjct: 293 DGSRLPVLVGSVIFQKRPRQIISFVLDNSARKELEQR--------------KDDFINMAS 338 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+R PL A+ ++ + +R + + ++ + ++ +LLD+SKI++G Sbjct: 339 HELRNPLAALKMQTQ-LVRKRLEKQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAG 397 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K+ EPV L+ + E +Q + +++R ++ D ++Q+ N++S Sbjct: 398 KLEYLQEPVDLEALLHEVADTMQQISTTHAVVVR---GAAPCTLIGDKGRLEQVFTNLIS 454 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI ++P + I + V +RV D G G+ + +K + F ++ + Q G Sbjct: 455 NAIKYSPDAKTVEIDLDASPE-MVTIRVHDHGPGIPREQRDKIFERFYRVADPNQKAIPG 513 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GL + +V + G + S KG+ + P Sbjct: 514 LGMGLYIVAEIVKRHGGTITVDSEVGKGSTFTVTLP 549 Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 28/321 (8%), Positives = 74/321 (23%), Gaps = 19/321 (5%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD ++ + SE + + W G ++ ++ G+ + Sbjct: 65 TDIEEQKQAEQRSKTSEENWRMLAETVP-QLVWASSPDGRVEYWNQRWYAYTGSSIEHAL 123 Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAALPIYSRN 172 G + L+ + + +G Y +P+ Sbjct: 124 GHGWSQFLHPDEYQHTLTVWHHALEMGEPY--EIEYRLKDGQAEGYRWFLARGMPVRDET 181 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPP 231 + + FG ++ ++ L + G SVE E + Sbjct: 182 GQIV--KWFGTSTDIENQKRTEEALRQSQERIRALIDSNIIGIVSVEGEGEVLVEANEAF 239 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFG 290 H+ + + + +K + ++ E L + Sbjct: 240 LHMT----GYIQEDVRSRTLNRVKITPLEHAPFFQRAIQEVNARGQHTPLETELVCKDGS 295 Query: 291 TLQNNSK------ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 L + +S S ++ ++ Sbjct: 296 RLPVLVGSVIFQKRPRQIISFVLDNSARKELEQRKDDFINMASHELRNPLAALKMQTQLV 355 Query: 345 NPSFLLLTKYKSVDDIEIAGG 365 + +++ + G Sbjct: 356 RKRLEKQSHHEAATALSRVEG 376 >gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 606 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 26/379 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L SIL +DG+ +R G I+ N +++ E +L +P Sbjct: 251 QEAQASTEGERRKLDSILTHMTDGVIATDRRGRIILINEPAAEMLDVSRETVLSQPLISV 310 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 L+ + LTE S+ L + E+ +I + F S +HD Sbjct: 311 LKIENEHKFDDLLTEQDSVILDFSTEEEPYILRAN-----FSVIQNEAGFVSGLITVLHD 365 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E ++ + + +F+A VSHE+RTPLT + + E + + G + Sbjct: 366 VTEQEKIDME--------------RREFVANVSHELRTPLTTMRSYLEALTD---GAWKD 408 Query: 621 PRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + ++ ++ +VNDLL +SK++S +L+ E V+ E I + A Sbjct: 409 EKIAPQFLGVTQNETERMIRLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFE-MA 467 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 ++ + + N + D + Q+ NI+SNA+ ++P GGQI NE++ + Sbjct: 468 KQQNVTFKRKLPNTEIFVEIDEDKMTQVLYNIISNALKYSPEGGQITFKLR-ELNEKIEV 526 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D GVG+ ++K + F ++ ++ + GTGLGL +AK MV+ + G + S Sbjct: 527 SISDQGVGIPKENVKKIFERFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEG 586 Query: 800 KGTLIEIIFPLYDTSHPHD 818 KGT I P Y+ + + Sbjct: 587 KGTTIYFTLP-YEPAQEDE 604 >gi|239826363|ref|YP_002948987.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. WCH70] gi|239806656|gb|ACS23721.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. WCH70] Length = 744 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 112/731 (15%), Positives = 247/731 (33%), Gaps = 49/731 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 +G +++E + +++IG ++ D++ D +L + ++ + + Sbjct: 51 NGEFVDVNEAACQLFEMEKYELIGKKMTMFLDLVPPDILMFQQSMLHKFGSFSDELLIKL 110 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G ++ + EF I+ + F + Sbjct: 111 RNGKVKHIEFSMK----KDAFNEFD----LVIMRDISAHKALERERIIHEFLFKDVFNRA 162 Query: 212 KGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + E K K+ L+ + L +E Sbjct: 163 VDSIVIFDEFGRFIDVNPAFCMSLNLEKEKLLKLSFQQFISKECADDFVRLLAELKEKGT 222 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDK 328 + E + T S ++ + E ++ Sbjct: 223 AKGELSLVRFDGTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ 282 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 ++ G++ AN + + ++ + L L D + + Sbjct: 283 AHEAILIWDDQGHILNANHAASRTFEL-PLNLLVRKNLLDFL----DHDDEKVQRVFAEF 337 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 R T + F Q + I + R +R++ Sbjct: 338 RIKGEIRDEL----TFHMPNGQDKQLEFT----MKQGAIDGYHLTIFRNVTERRKMEREL 389 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + SI + + +GI + IL N ++F E +L +P T F+ + Sbjct: 390 RESEQKFRSIFDHSMNGILLWGEGYHILDVNPIACEIFQATKEQLLHRPITAFIPEKARK 449 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + L ++ + ++K++ + + +P + + DI+E K+ Sbjct: 450 HFYKLAQQCDRLGEA--YAEMDFSNGGKQKIVEFSLKKEIIPGVG--MIMLRDITERKEM 505 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L + + + A ++HEIR P+TA+ GF ++++ Y Y Sbjct: 506 ELQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSI-----KEDYSMYF 555 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I + I+ + L ++K ++ + F+ + + + + I L+ A + I Sbjct: 556 NVIMSELKRIESIITEFLVLAKPQA----IQFQQNDVCKIMQDTIDLISAQATMHNVQIV 611 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 FA ++P I + +KQ+ +NIL NAI P GG++ + + + + + D G G Sbjct: 612 ADFAPHVPFIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRINRLDDSHIRISITDQGCG 671 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +++K +PF + GTGLGL ++ +++ + GK + S GT I Sbjct: 672 IPQDKIKKLGQPFYTT------KERGTGLGLMVSYKIIEEHQGKIDVESEVDVGTTFHIT 725 Query: 808 FPLYDTSHPHD 818 P+ + Sbjct: 726 LPIERVEKEDE 736 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 33/368 (8%), Positives = 99/368 (26%), Gaps = 32/368 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G +++ ++ K++ + D + LK + T G+ +L Sbjct: 170 DEFGRFIDVNPAFCMSLNLEKEKLLKLSFQQFISKECADDFVRLLAELKEKGTAKGELSL 229 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT + + + + GF I+ + ++ +++F + Sbjct: 230 VRFDGTVKMFELTTTS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279 Query: 208 HEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263 E + + + + + + + + + L ++ H D+ ++ Sbjct: 280 FEQAHEAILIWDDQGHILNANHAASRTFELPLNLLVRKNLLDFLDHDDEKVQRVFAEFRI 339 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + ++ FH N + + + + + E E Sbjct: 340 KGE--IRDELTFHMPNGQDKQLEFTMKQGAIDGYHLTIFRNVTERRKMERELRESEQKFR 397 Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D ++ G ++ NP + + + + + Sbjct: 398 SIFDHSMNGILLWGEGYHILDVNPIACEIFQATKEQLLHRP-------ITAFIPEKARKH 450 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L + A N + F + + + + + Sbjct: 451 FYKLAQQCDRL--GEAYAEMDFSNGGKQKIVEFSL----KKEIIPGVGMIMLRDITERKE 504 Query: 443 NKRKMEIE 450 + ++ Sbjct: 505 MELQLRKS 512 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 3/149 (2%) Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + R+++ + I E + D I I N+ G + N A +LF Sbjct: 7 PREEQSLVVDVKSLEEENRRLKERLNGYSIIFERSLDAIVIFNKNGEFVDVNEAACQLFE 66 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +++ K T+FL+ P ++ + + + L + K+ + +K Sbjct: 67 MEKYELIGKKMTMFLDLVPPDILMFQQSMLHKFG---SFSDELLIKLRNGKVKHIEFSMK 123 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 K F+ + M DIS K + + + Sbjct: 124 KDAFNEFDLVIMRDISAHKALERERIIHE 152 >gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC 35937] Length = 673 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 102/535 (19%), Positives = 205/535 (38%), Gaps = 42/535 (7%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHGN-----LFYANP 346 S S P+ A + E F V+ + N Sbjct: 2 STSSPSPDLAAALPAAIAEPFLDPAMYHEIFHNIDAGFCVIDMVFEGDQAVDYMIRTTNG 61 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 +F T + ++ I G L + I + ++ Sbjct: 62 AFERYTGLSNALNVSIRGMLPE-------HEQEWFDRYGQVARTGNRIHFEMQAKALRR- 113 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + PE + + + + +R++ + ++ + + Sbjct: 114 -------WYSVDAFRVGQPEQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVW 166 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +++ +G++ N A + FG + ++ L + S+ L+ L ++ L Sbjct: 167 VLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDRSIFQFELSAALE--EQRGLR 224 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH-------AK 575 + + + + + + + + D++E ++ + A+ Sbjct: 225 ALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLDSERSAR 284 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE + K +FLA +SHE+RTPLT I+G+SE++ + G+P Y + I S Sbjct: 285 NEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--EEGHPNYKG-LSVIASSAR 341 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +++D+LD+S + GK+ L E + L E V EA+S +L A+ K ++ Sbjct: 342 AQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALSTQELAADGKDQVLELHVPPTPC 401 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 +L D ++Q+ N+LSNAI FTP+ G+I ++ + +++ VRD+G G+ L Sbjct: 402 LVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIE-RDDGHLLVSVRDSGDGIAAEFLPH 460 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 F Q + + G GLGL + + +V+ + G+ S +G + P Sbjct: 461 LFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGQGATFTVRLP 515 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 116/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 134 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 192 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + L+ Q +G + I++ A P YS + Sbjct: 193 TVSAWSELLHPDDRSIFQFELSAALEEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 250 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 251 GRFIGLAGSSPDVTEQREIELAREQLLDSERSARNEAESMARLKD-EFLATLSHELRTPL 309 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288 + +++ H + + +++ + + D ++ L + Sbjct: 310 TTILGWSELLLQRVEEGHPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 369 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + + E + L + L + + + + P+ Sbjct: 370 LAEQVREALSTQELAADGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 428 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 429 GRIDVTIERDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 488 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 489 LVEMHGGQVGATSGGRGQGATFTVRLPEHVPDQAKRPRRELRRRLMSEQIVEARALNGLR 548 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 549 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 591 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 13/192 (6%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + + L + E E D P+P + Sbjct: 107 QAKALRRWYSVDAFRVGQPEQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVW 166 Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 V G + + N ++ ++I+ G + D+ +I L + Sbjct: 167 VLDAQGVVRFVNSAYGEFFG------LDISSGTVSAWSELLHPDDRSIFQFELSAALEEQ 220 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIE 450 A L + + + + + + G P+ + R + ++ Sbjct: 221 RGLRA-LVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLDS 279 Query: 451 VMQLCSILEATS 462 + E+ + Sbjct: 280 ERSARNEAESMA 291 >gi|124268351|ref|YP_001022355.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124261126|gb|ABM96120.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1077 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 126/641 (19%), Positives = 254/641 (39%), Gaps = 17/641 (2%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V R D R + + + S + + P V++L+ Sbjct: 301 RVARQDLPAFEASLRSLGQPHYRVFERDSALSANDSELMVMRYIEPRAGNDTALGVNALS 360 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A + + L ++ T + + ++ F L Sbjct: 361 IRAAREAIARARLNDGATVTPGFRLTQETAQQTGVVVYRAVYRGDEPSRSLQGMVFITLR 420 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 + + A +D P G+ A P+ L + + Sbjct: 421 MEDALARLAVGAPRYLQFC-LLDSDAPPESRLLAGSSDCARPAVNPLWSHTAEIPFAGRT 479 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + + A P+ + + + L T +L + + + Sbjct: 480 WELRVQAPNGVPNGPAAGPLSGESATAWLFSLTGLLGTGMM---GALLLLVTGRTRQTET 536 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 +E E + ++ + + SI + G+ + +G I N A + Sbjct: 537 AVAERTEQLEHEITERLATEQALRESEQRFRSIFNSVPIGVVYTDLQGRIKQPNAAYCTM 596 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY E++L + +++ L + T+ +L + + Sbjct: 597 TGYSEEELLSLSLASLTHPEDRAADLASQQDLVDGRLP-LYRRRKRYVTRNGPVLWVSVT 655 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + L + DISE + + + HA++ AE + K++FL+R+SHE+RTPL Sbjct: 656 VSLLRDEHGQPHRLVGLVEDISEHLRLE-EAEHARESAETANRAKNEFLSRMSHELRTPL 714 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 A++GF++ + + G + R+ + I ++G +L+++ND+LD+S+IESG ++L E Sbjct: 715 NAMLGFAQ-LLDLDRGEPLHERHRMWVTQIQQAGWHLLEMINDVLDLSRIESGTLSLQVE 773 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 +SL+ ++ +++LV+ A + + + + A + P ++L D VKQI N+LSNA+ + Sbjct: 774 SLSLEPLIAASMALVEPQARGRGLTLVRTMAEHAPLQVLGDATRVKQILTNLLSNAVKYN 833 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G++ +ST T + + + L V DTG+G+ L + +PF ++ + EGTG Sbjct: 834 REAGEVRVSTRRTEDRDGTPMLELDVCDTGLGIEPQLLTQLFQPFNRLGRERG-ATEGTG 892 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +GL +AK + + G + S P G+ + PL + P Sbjct: 893 IGLVIAKLLAERQGGSLKVRSEPGVGSTFTLRLPLDSQARP 933 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 29/301 (9%), Positives = 81/301 (26%), Gaps = 18/301 (5%) Query: 36 TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95 T ++++ + + + + +SE F + + D G + Sbjct: 528 TGRTRQTETAVAERTEQLEHEITERLATEQALRESEQRFRSIFNSVPIGVVY-TDLQGRI 586 Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNT-WYGKTTLWPIE 153 K+ + G +++ + L ++ + L+ + + + Sbjct: 587 KQPNAAYCTMTGYSEEELLSLSLASLTHPEDRAADLASQQDLVDGRLPLYRRRKRYVTRN 646 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G L+V + ++ L + + R G+V + + Sbjct: 647 GPVLWVSVTVSLL--RDEHGQP--HRLVGLVEDISEHLRLEEAEHARESAETA------- 695 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + K + S+ S + + + + L +T + + Sbjct: 696 ----NRAKNEFLSRMSHELRTPLNAMLGFAQLLDLDRGEPLHERHRMWVTQIQQAGWHLL 751 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + L+ + +LQ S ++ G L + P+ Sbjct: 752 EMINDVLDLSRIESGTLSLQVESLSLEPLIAASMALVEPQARGRGLTLVRTMAEHAPLQV 811 Query: 334 F 334 Sbjct: 812 L 812 >gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1342 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 95/414 (22%), Positives = 179/414 (43%), Gaps = 14/414 (3%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + W+ + + I + A+ ++ + + +E E QL + Sbjct: 485 IHTTSWSWSPSDIELLEAISKQIASACTQSHLYAQTQEQIQLLDNTLNSLERERRQLQQV 544 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + + +A+ + E ++ ++ + G E I+ + + + P L Sbjct: 545 IASAPMAMAMFDNEMRYMAHSQKWLTVQGLEGESIIGR-CHYDVIPDVPEHWKQIHQRAL 603 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + + + + ++ +R I S+ + ++ +L A++ Sbjct: 604 TGQV--ITNPEDIWERSDGSIVYMRWAINPWYTSNGQVGGIVIATDQIN---ELVEAREA 658 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A + KS FLA +SHEIRTP+ ++G ++ + R +YA I RS + + Sbjct: 659 ALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQLTS----RQRDYAQTIRRSADHL 714 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LD SK+E+G+M L LD + + ++ A K + + T +P + Sbjct: 715 LTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATLVDRKVPRQ 774 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + D ++Q+ LN+ +NAI FTP G + + T + N + V DTGVG++ Sbjct: 775 LKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDTGVGISPEGQ 834 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 EK + F Q+ NS + GTGLGL + K +VD G+ + S KG+ Sbjct: 835 EKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGKGSTFWFT 888 >gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 1093 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 111/581 (19%), Positives = 215/581 (37%), Gaps = 40/581 (6%) Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + H T Q G + + S + L Sbjct: 104 RTARRGWHPNYAPHPTPTPIVTGLQTIGVHAVSHASTTSTASTDDPVHLEGEMGRLRARF 163 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 ++ + + ++ + + S ++ P D Sbjct: 164 IASIKRAGLNYWDFDFATNRFIFSSTYKSLLGYENRELPDNANTWRERIHPNDRDLALN- 222 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L + H ++ + ++ G+ + R Sbjct: 223 --ALEAAREGRDPILCFSHRLKTKDGGYRWVLAHGVVLRDEAGVPRHITGLILDLTSQRH 280 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGI---ILSTNRAVSKLFGYPVE---DILRK 495 N+ ++ + + ++++ +D +AI + G I+ N G ++L + Sbjct: 281 NQVELRL----MHAVVDHAADAVAITSSAHGRHRAIVYANPTFMDWLGMDASSYFELLGR 336 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 F + I + L + TL ++ L + + + +P Sbjct: 337 EIEEFFCLEDQPSSDASSATISISG--RNLARETLLKRRDGSTLEVDLQVFTIPGEREAD 394 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 DIS K+ + +L AK+IA++ + K+ FLA +SHEIRTPL +++G + ++ Sbjct: 395 LRLVWVARDISVRKRFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNSVLGMTRLLM 454 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + A I SG +L++VN +LD+SKIESG+M L +S V Sbjct: 455 DTPLTA----EQRDLAAAIQSSGESLLELVNGVLDLSKIESGRMELEHASMSPRGVVESV 510 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIII-- 727 + ++ A K + + A ++P + D ++Q+ +N+ SNA+ FT SG I + Sbjct: 511 LDMIAATAERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTASGSVTIDVIT 570 Query: 728 -----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 S + + VRDTGVG+ ++ + + Q S GTGL Sbjct: 571 LGQCPLRPGRDSVSDRPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASITRLYGGTGL 630 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHP 816 GL ++K +V+ G+ + S P +G++ + D+SHP Sbjct: 631 GLAISKKLVELMGGEIEVESEPGRGSIFRFTIRVEPDSSHP 671 Score = 39.2 bits (90), Expect = 2.8, Method: Composition-based stats. Identities = 35/414 (8%), Positives = 87/414 (21%), Gaps = 33/414 (7%) Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFT----------WNID-AHGYLKEISEELPKTIGNY 109 S ++T D + RF W+ D A S +G Sbjct: 139 STTSTASTDDPVHLEGEMGRLRARFIASIKRAGLNYWDFDFATNRFI-FSSTYKSLLGYE 197 Query: 110 AFKMIGM--RLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 ++ + D N + + ++ + + + + Sbjct: 198 NRELPDNANTWRERIHPNDRDLALNALEAAREGRDPILCFSHRLKTKDGGYR-WVLAHGV 256 Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKFSHLHEIKKGHSSVEKEKYDI 224 + G + ++ N D + H Y Sbjct: 257 VLRDEAGVPRHITGLILDLTSQRHNQVELRLMHAVVDHAADAVAITSSAHGRHRAIVYAN 316 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + E +D ++ +L + + + Sbjct: 317 PTFMDWLGMDASSYFELLGREIEEFFCLEDQPSSDASSATISISGRNLARETLLKRRDGS 376 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 T+ + + S+ F+ D+ Sbjct: 377 TLEVDLQVFTIPGEREADLRLVWVARDISVRKRFEAQLVEAKRIADQANE---------- 426 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 A FL ++ + G++ LL L+ + S + + + Sbjct: 427 --AKTRFLAGMSHEIRTPLNSVLGMTRLLMDTPLTAEQRDLAAAIQSSGESLLELVNGVL 484 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + + + E + R E ++ Sbjct: 485 DLSKIESGRMELEHASMSPRGVVESVLDMIAATAERKGLEVAARVAEDVPERVR 538 >gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium praevalens DSM 2228] Length = 593 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 167/369 (45%), Gaps = 26/369 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E ++ +IL + DG+ +N EG + N A ++F E I K L + Sbjct: 249 EVSQEKNRIEAILASMLDGVIAVNAEGEVTLINPAARRIFNIEAEKIRGKTLISSLFSHR 308 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563 + + D ++ + + E+K++ I + + + DI+E Sbjct: 309 IDMYLQ-----RAFDKKEVISREIKYKNPEQKIIQATFIPLLAADKKLNGGVIVLTDITE 363 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + ++DF+A VSHE+RTPLT+IIG+ + + Sbjct: 364 LRKLETV--------------RNDFVANVSHELRTPLTSIIGYLDTLLESDI--EDQDTR 407 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I + + +++NDLL++SKIES L + ++ V + ++L+ A +++ Sbjct: 408 ERFLQIIKEETDRLSNLINDLLNLSKIESQIFKLEADNF--EKIVKKVVNLLSQKAKKQK 465 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + NN+P + +KQ+ +N++ NAI +T GG++ + + ++ V+D Sbjct: 466 LELNLEIDNNLPLVYMVREQIKQVLINLIDNAIKYTAEGGKVEVKVKQEKD-KIYFSVQD 524 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ + E+ + F ++ ++ GTG+GL + + ++ + + + S G+ Sbjct: 525 NGMGIPQADQERIFERFYRVDKARSRALGGTGIGLSIVRNIIKQHGSEIQLKSREGVGSE 584 Query: 804 IEIIFPLYD 812 + + Sbjct: 585 FYFYLKIAE 593 >gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG 3301] Length = 783 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 155/757 (20%), Positives = 286/757 (37%), Gaps = 68/757 (8%) Query: 93 GYLKEISEELPKTI-----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 G I L + + + ++ I+ + L + Sbjct: 39 GKFVSIEPILRRLVPALIIIFLIILGVARVFSMLAWRDDIEQQHK--AFLSAATANLAQM 96 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 GT+ L+A I EF +R + P +D + S + Sbjct: 97 IERAANGTDAGA--QLSAKDIQDTMAEFR----------SRGLSSPGMTLAVIDGQSSVV 144 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 G K I S P + V +T L L+ S Sbjct: 145 AASGPGPDISGKPLDTILSDAQPLFLFAERAGVLKVTLQAEPAFGALSKP----LSLPYS 200 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLT 322 + + + + + F L + + Sbjct: 201 IIAVEPESTIFAEWRRAVSLNVTLFAGTTGVMFAILYAYFSQAARAREADDLSGQIQRRI 260 Query: 323 PETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + + + Y + S + Y++ D + G ++ +++ + Sbjct: 261 DLALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLPFGDVAAIINTEDGDLYSIA 320 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + R+ ++ + + M + + GI + + Sbjct: 321 EQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASEGD---LHLVGIAFDVSEQH 372 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVF 500 ++ M++ +E S+ + + ++ N S+ G PV + P Sbjct: 373 RFAQQTAEADMRIREAIENISEAFILWDSNNRLVMANSKFSEYAGLPVWTLKPGVPRNEV 432 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKIT---------LGSTKEEKLLSLRIIIKKL--- 548 P + + QT E+ T++ L+S+ I +L Sbjct: 433 DAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLH 492 Query: 549 -----PFSSCYSLTMHDISEWKQEKNK-----------LSHAKKIAEKESSHKSDFLARV 592 T+HD+S ++ + K+ AE + KS+FLA + Sbjct: 493 QERLVDSERRLMATIHDLSIARKGERDRVRELSELARKYGQEKERAEAANRAKSEFLANM 552 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY N I SGN +L+++ND+LD+SKIE+ Sbjct: 553 SHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEA 612 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G +L E + L ++E + ++ L A+EK I + T + + ++ AD R++KQ+ +N+L Sbjct: 613 GHFSLDREEIDLCPLINETVRMISLQADEKNIAVNTRIEDAM-QLYADRRAIKQVLINLL 671 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNA+ FT GGQI + T + + + ++DTGVG+ ++K +PF Q+ N Sbjct: 672 SNAVKFTSYGGQITVRARKTGSA-LFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHT 730 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GLGL + +++ + + G I ST GT++ + P Sbjct: 731 GSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIP 767 Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 13/249 (5%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 271 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINTEDGDLYSIAEQAAAGDI 328 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 329 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 383 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260 + E + + S V +L + T + Sbjct: 384 RIREAIENISEAFILWDSNNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRPFTFE 442 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E + + F + + Q+ S + D Sbjct: 443 RRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLHQERLVDSERR 502 Query: 321 LTPETVDKC 329 L D Sbjct: 503 LMATIHDLS 511 >gi|223936889|ref|ZP_03628798.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223894458|gb|EEF60910.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 938 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 103/835 (12%), Positives = 246/835 (29%), Gaps = 110/835 (13%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106 F++S Q S + + +SE F + T + W G L + Sbjct: 5 SRFDESPD-STPQHSSAEQHLRESEARFR-SLVLATAQAIWTAGPDGRLTSKNPSWEAFT 62 Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 G + + + ++ + L +G + + A Sbjct: 63 GLTHQESVDFGWLKAVHPEDQQLTLSAWKTAVANTASYSIEHRLQRHDG--QWRYMLTRA 120 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---RLDKKFSHLHEIKKGHSSVEKEKY 222 +P++ + G G L ++ S + ++ Sbjct: 121 VPVFDEQGQVR--EWIGANTDITERKRAEFRGAVFSVLGQRLSAARTPRDAARTILDAAD 178 Query: 223 DIFSQQSPPPHLRMKNKVS-----------SLTEYYAHKDD---------VLKTEKYPLL 262 + + L A D + E L+ Sbjct: 179 QLIGWDGCFLDSYSSEQDVINSVLAMDLMNGLRTEVAPSGDGGEPTATMRRVLAEGAQLI 238 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL------------------- 303 E ++N+ F ++++ K + Sbjct: 239 LRENPQSQPNSTMRFGDVNRPAASLMFVPIRSSLKVAGFLSIQSYKLHAYSREDLRTLQS 298 Query: 304 ------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYK 355 + E D+ P P VY + AN + + Y Sbjct: 299 LADYCGAALERIQSEEALHASERKYLLLFDRNPSPLIVYDIETLRVLAANEAAIHHYGYS 358 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + + V ++ + ++ + L Sbjct: 359 REEFL-------AMTLKDYRPPEDVPFLVKKMQTMGDGLQLLGPFRHLKKDGSIILVDIN 411 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + + + + ++L + +E ++D I ++ +G+I Sbjct: 412 SHSLTFEG---RKARLVMMTDITERKRAEDNL----VRLATAVEQSTDIIIHLDLDGLIE 464 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A ++ GY E ++ + + + + + + + K+ Sbjct: 465 YVNPAFERITGYGREAMVGRHINSL--PQDGEAHFEFAHLVGRIAVSGSWSGRFVSRKKD 522 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + I + Y D++ + ++ A+K+ Sbjct: 523 GQKFEADVSIYPIRDEGGKITSYIAVERDVTRETALEEQVRLAQKM-----EAIGLLAGG 577 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 V+H+ L I+G++ ++ + + ++ + LL + + Sbjct: 578 VAHDFNNLLQVIMGYT-MLAR----SASEHELGHHLEQVQKAAERATQLTRQLLAFGRRQ 632 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 + + +++ V++ + +++ + I I ++ I AD ++Q+ LN+ Sbjct: 633 A----MQKTDTDINQLVADHLKMLRRLI-GENIEIHFLAGKHLENIFADKGQLEQVLLNL 687 Query: 712 LSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAM 757 NA P+GGQ+ + T + ++L V D G+GM L + Sbjct: 688 CVNARDAMPNGGQLTLETQNFVIDHSFCEDHPWARAGNFILLTVTDNGMGMDRETLSRIF 747 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +PF +G GTGLGL + ++ + G +++S P GT +I P+ Sbjct: 748 EPFFTTKP----KGRGTGLGLSVVYGIIRQHEGLIHVYSEPGLGTTFKIYIPMAQ 798 >gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 918 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 108/580 (18%), Positives = 210/580 (36%), Gaps = 54/580 (9%) Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + ++ + + + + + A +E E Sbjct: 124 TPTLQQPEFPPRGPPTKGNGDMAASASVFQKATQLKDAILNSITMPAYAQIEENEKQFEY 183 Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + P+ + + G + + + T + L P A + Sbjct: 184 IANFMPVMVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEG---WRLPFHPDDMATTAPR- 239 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 R M + + G + D + Sbjct: 240 WFHSLKTGDEYNTEYRCQRY---DGEWRWMLGRALPFYDDSGRIVKWFGTCTDIHDLVMA 296 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR-------EGIILSTNRAVSKLFGYPVEDILRKP 496 +++ QL +++ + +I+R EG I ++ +++L + Sbjct: 297 RQEARQTREQLQQVIQYAKIVLWVIDRNNEVKVLEGDIT----PHERM---KKKELLGRN 349 Query: 497 FTVFLE--QNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPF- 550 E N + EIL + ++ +L+ L + + Sbjct: 350 ILDVFELTGNDRKRWQGPIQEILQGKQSDEIVNGGYMSEARYYRTRLVPL-MSASRTAGI 408 Query: 551 -----SSCYSLTMHDISEWKQE----------KNKLSHAKKIAEKESSHKSDFLARVSHE 595 DI+E ++ ++L + A++ S KS FLA +SHE Sbjct: 409 EGNAFVDGVIGVSMDITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFLANMSHE 468 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ +IG SE++ + N + A I RS N +L ++ND+LD SK+ESG++ Sbjct: 469 IRTPIAGVIGMSELLFDMNL----NDEQKDCAENIHRSANSLLTVINDILDFSKVESGRL 524 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNIL 712 ++ SL + + ++ A K + ++S + + R++ D ++QI N+L Sbjct: 525 DVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQADLRVMGDPGRLRQILTNVL 584 Query: 713 SNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 +N+I FT G ++IS V V DTG+G+ ++ +PF Q +S Sbjct: 585 TNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGIEEEVRKRLFQPFSQADSSTAR 644 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 R GTGLGL ++K +V+ G+ ++ S +GT P Sbjct: 645 RFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 684 Score = 64.3 bits (155), Expect = 9e-08, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 6/160 (3%) Query: 62 VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121 + ++E F + V W G S+ G K +G Sbjct: 169 PAYAQIEENEKQFEYIANFMPV-MVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEGWRLP 227 Query: 122 SDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 LK + + + +G + + ALP Y + + Sbjct: 228 FHPDDMATTAPRWFHSLKTGDEYNTEYRCQRYDGE--WRWMLGRALPFYDDSGRIV--KW 283 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 FG R ++ ++ + + K V Sbjct: 284 FGTCTDIHDLVMARQEARQTREQLQQVIQYAKIVLWVIDR 323 >gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 1018 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 105/592 (17%), Positives = 212/592 (35%), Gaps = 27/592 (4%) Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 M N + + L T ++ + + + ++ Sbjct: 1 MSNAAGANRAGRVVELAALARGAIHRRTDRTFAVLLLLQWFAMVALAVWVSPRTWSGADS 60 Query: 296 SKESFEYLSHR---------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345 + + +L ++ G + Sbjct: 61 RTHPHIWAAVALGGLVVSLPVALALRRPGATSTRCVIAAAQMLSAGVLIHLTGGRIETHF 120 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 F L D + S + ++ A + + + Sbjct: 121 HVFGSLAFLALYRDWRVLLVASAVTALDHIARGLAWPESVYGTVAGADWRWVEHAGWVVF 180 Query: 406 NRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + E + + R ++ + + S ++ + Sbjct: 181 LDVFLGASCWWGERDLTRTAQREAELEAAHATVEERIRERTAELWQQEERFRSAFDSAAI 240 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G+AI+ EG + NR + GY E +L+ F + + ++S ++ Sbjct: 241 GMAILTPEGRFVRVNRVLCDTVGYTDEQLLQCAFEAVTHPDDRPADAAFTARMISGEIAS 300 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 ++ K ++ +++ + + ++ + DI+ K+ + L A AE Sbjct: 301 -YQREKRYVHKAGSVVWVQVNVSLVRDAAGRPHHVVSQILDITARKEWEEVLRRATAAAE 359 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 S KS+FLA +SHEIRTP+ I+G +E++ R P E + S + +L Sbjct: 360 AASRAKSEFLANMSHEIRTPMNGIVGMTELLLETRLTP----EQRESVGLVKSSADALLT 415 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 ++ND+LD SKIE+GK++L P SL + V + + + A+ K + + ++P +L Sbjct: 416 VINDILDFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLL 475 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754 D ++Q+ N++ NAI FT G ++++ + V DTG+G+ +L+ Sbjct: 476 GDAHRLRQVLTNLVGNAIKFTDRG-EVLVRCERVPESGDAVVLRFSVTDTGIGIPGEKLK 534 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +PF Q S + GTGLGL + + +V G+ + S KG+ Sbjct: 535 AVFEPFTQADGSTTRKYGGTGLGLTICQRLVGLMGGRLWAESESGKGSTFSF 586 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 19/228 (8%), Positives = 54/228 (23%), Gaps = 14/228 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTT 148 G ++ L T+G +++ V+ + + ++ + Sbjct: 247 PEGRFVRVNRVLCDTVGYTDEQLLQCAFEAVTHPDDRPADAAFTARMISGEIASYQREKR 306 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G+ V + + + + + + +R Sbjct: 307 YVHKAGS--VVWVQVNVSLVRDAAGRPHHV--VSQILDITARKEWEEVLRRATAAAEAAS 362 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 K + + P + L E + + Sbjct: 363 RAKSEFLANMSHEIR-------TPMNGIVGMTELLLETRLTPEQRESVGLVKSSADALLT 415 Query: 269 -LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + DF I + +L++ ++ + L+ R H Sbjct: 416 VINDILDFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELA 463 >gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver domains [Desulfovibrio sp. 3_1_syn3] Length = 1228 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 110/598 (18%), Positives = 216/598 (36%), Gaps = 38/598 (6%) Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 ++S+++E + L+ + + I + ++ + Sbjct: 494 VNATDEELSAVSEDTYRAISENLWQTAASLSVSTTLMSVLVILIAIWMASVFTRRIAQMV 553 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------PIPFFVYSHGNLFYANP 346 + S+ R + + D P+ V G L Y N Sbjct: 554 RGISRFRAGERQFRFRAPVKDEMGALSDSFDGLADSLVNSDKGPLSI-VDLSGKLAYMNE 612 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + L L D + +T+ A + T H+ ++ Sbjct: 613 AGLALIGKTLEDVLGKPYAENTIFPPGTAYCPLAC------LARGTEPEVLRHEHSGRYY 666 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + ++T + + ++++E + L +I + D + Sbjct: 667 QGRAESLT-------DGRGVVTGHLVHTADVTAIIEEQKRIERQRALLETIFVNSPDILW 719 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 ++ G + N + L E+I P + + + E Sbjct: 720 YQDKGGNYQAVNPRFAALVNKTPEEIRGLPASAVFPPEVAARSLENFRAAIEGRTPLYTE 779 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI----- 577 + + ++ ++ + D+S+ + +L + Sbjct: 780 ETVYF--ADGHSENMDVVRIPQFNAGGEVLALLGVARDVSQRVAVEKELRRIQTELQEAC 837 Query: 578 --AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 A + + KS FLAR+SHEIRTP+ AIIG + + + + + AN I+ S + Sbjct: 838 ATANRANEAKSSFLARMSHEIRTPMNAIIGMANIARKKLHARSPTDELLNCANQIEVSSH 897 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694 +L ++ND+LDISKIE+GK+ L + +L + V+ S+++ EK I + Sbjct: 898 HLLGLLNDILDISKIEAGKIELSEDSFALSKLVNSVESIIRPRCMEKNIAFNVAVEGIAT 957 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTN 750 + AD ++Q+ +N+L NA FTP G+I+ + V+D GVG+ Sbjct: 958 AHLKADSLRLRQVLINLLGNAAKFTPELGEILFRVRQEDRRRGERLISFLVQDNGVGIAE 1017 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L+ +PF Q GTGLGL ++K+++ G + STP KG+ + Sbjct: 1018 ETLKTLFEPFEQGSTHIARAYGGTGLGLSISKSIIKHMGGDIAVTSTPGKGSAFSFLL 1075 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 8/142 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144 W D G + ++ + ++ G+ V + ++ + Y Sbjct: 718 LWYQDKGGNYQAVNPRFAALVNKTPEEIRGLPASAVFPPEVAARSLENFRAAIEGRTPLY 777 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + T++ +G + + + +P ++ E G R + A+ K L + Sbjct: 778 TEETVYFADGHSENMDVVR--IPQFNAGGEVLALLGVA-----RDVSQRVAVEKELRRIQ 830 Query: 205 SHLHEIKKGHSSVEKEKYDIFS 226 + L E + + K + Sbjct: 831 TELQEACATANRANEAKSSFLA 852 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 21/247 (8%), Positives = 56/247 (22%), Gaps = 23/247 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G L ++E IG ++G + + + L + Sbjct: 601 VDLSGKLAYMNEAGLALIGKTLEDVLGKPYAENTIFPPGTAYCPLACLARGTEP------ 654 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-----VNRVDNDPRALGKRLDKK 203 + + + R + RG H + + +R Sbjct: 655 --------EVLRHEHSGRYYQGRAESLTDGRGVVTGHLVHTADVTAIIEEQKRIERQRAL 706 Query: 204 FSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + + + + + ++ L +V Sbjct: 707 LETIFVNSPDILWYQDKGGNYQAVNPRFAALVNKTPEEIRGLPASAVFPPEVAARSLENF 766 Query: 262 LTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + L +E + + + N E L S ++ Sbjct: 767 RAAIEGRTPLYTEETVYFADGHSENMDVVRIPQFNAGGEVLALLGVARDVSQRVAVEKEL 826 Query: 320 NLTPETV 326 + Sbjct: 827 RRIQTEL 833 >gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 919 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 100/463 (21%), Positives = 184/463 (39%), Gaps = 23/463 (4%) Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + V L S + + E + + Sbjct: 160 FAIWTRRRGQPLGAVPLLCFGLLLALVSMSTLLLLPSLELAREVAERTAPALLAIIPVGT 219 Query: 430 QNGIEPEDVDTR--INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + R ++R++ + + + +D I + +G + + +V + G+ Sbjct: 220 LFLGGLLLREQRHHDSERRLGESEARYRLLADNATDMILELKADGSVRYLSPSVRDILGH 279 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 +I+ L + + S T ++ L + ++ Sbjct: 280 DPAEIVGHSPANLLHPDDLDAAALAFAGLKSGSPTVTFTH--RLRHRDGHYLWVESSMRP 337 Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 S + D++E K+ + +LS A+ AE + KS+FLA +SHEIRTPL +I Sbjct: 338 AVGSDGGFVVIGVVRDVTERKRYEGELSAARAEAEAATRVKSEFLASMSHEIRTPLNGVI 397 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF++++ P +Y +G +L I+ D+LD SKIE+GK+ L L Sbjct: 398 GFADLLLATELTP----EQRQYVALQREAGRGLLAIIGDILDYSKIEAGKLELEERAFDL 453 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 + + L+ A++K +L++ S A ++PR + D ++QI LN++ NA+ FT G Sbjct: 454 HRLLRDCRDLMSNAASQKGLLLQLSLAGSVPRFVHGDEARIRQILLNLVGNAVKFTERGS 513 Query: 724 QIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 +++S + + V DTG G+ + + F Q S R G Sbjct: 514 -VLVSVGLLTGPGEGGGEGAPVLLRFSVSDTGPGIPPADQANLFQRFSQGDRSTTRRYGG 572 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 TGLGL ++K +V+ G + S+P G+ PL + P Sbjct: 573 TGLGLIISKQLVELMRGHIGVQSSPGVGSTFWFELPLPVAASP 615 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 98/396 (24%), Gaps = 30/396 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTL 149 A G ++ +S + +G+ +++G ++ +D LK + T L Sbjct: 262 ADGSVRYLSPSVRDILGHDPAEIVGHSPANLLHPDDLDAAALAFAGLKSGSPTVTFTHRL 321 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G Y+ ++ + P + GF G+V + Sbjct: 322 RHRDGH--YLWVESSMRPAVGSDG---GFVVIGVVRDVTERKRYEGELSAARAEAEAATR 376 Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263 +K + + + + + L +L Sbjct: 377 VKSEFLASMSHEIRTPLNGVIGFADLLLATELTPEQRQYVALQREAGRGLLAIIGDILDY 436 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S+ + + + +L++ + S++ + + Sbjct: 437 SKIEAGKLELEERAFDLHRLLRDCRDLMSNAASQKGLLLQLSLAGSVPRFVHGDEARIRQ 496 Query: 324 ETVDKCPIPFFVYSHGNLFYAN-----------PSFLLLTKYKSVDDIEIAGGLST--LL 370 ++ G++ + +L ++ D L Sbjct: 497 ILLNLVGNAVKFTERGSVLVSVGLLTGPGEGGGEGAPVLLRFSVSDTGPGIPPADQANLF 556 Query: 371 DAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 D + + + L S + + S +P A Sbjct: 557 QRFSQGDRSTTRRYGGTGLGLIISKQLVELMRGHIGVQSSPGVGSTFWFELPLPVAASPG 616 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 G E R + E + + I+ ++ Sbjct: 617 LVASGAGAERGRAAPARGARILLAEDVPMNQIVTSS 652 >gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 595 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 87/375 (23%), Positives = 176/375 (46%), Gaps = 25/375 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + +++ QL ++LE G+ +I G I+ NRA+ ++ G +++ K Sbjct: 239 KQQMNEIDENEQQLTAVLENMDSGVMLIQTSGRIMLVNRAMEEMTGLSSGELIGKR---H 295 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558 +E ++ + L R +E++L I + Sbjct: 296 IEAGKSFGLSQLIDRSLKTGER--FRDEVHLYYPKERILDAHIAPYVGESGELRGVVAVL 353 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD++E ++ + +S+F+A VSHE++TP+T++ GF+E + + Sbjct: 354 HDVTETRRLE--------------QIRSEFVANVSHELKTPVTSVKGFAETLLDGAM--Y 397 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 E+ I + + +++D+LD+S+IE ++ L E +++ + V+E + ++ Sbjct: 398 DEATLREFLKIIYDESDRLHRLISDILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRKR 457 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K++ + + AD ++QI LN+++NAI +TP G+I IS E+ Sbjct: 458 IEKKQLELVL-PQKRHVMMEADKDRLRQILLNLVTNAIAYTPDKGRIEISL-IERENELD 515 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L V DTG+G++ +L + + F ++ ++ + GTGLGL + K +V++ GK + S Sbjct: 516 LIVSDTGIGISEKDLPRIFERFYRVDKARSRQSGGTGLGLAIVKHLVESYHGKIRVESEE 575 Query: 799 AKGTLIEIIFPLYDT 813 KG+ + P T Sbjct: 576 GKGSTFIVTLPRTQT 590 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + ++ + + G + ++IG R + + I LK + + L+ Sbjct: 270 GRIMLVNRAMEEMTGLSSGELIGKRHIEAGKSFGLSQ--LIDRSLKTGERFRDEVHLYYP 327 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + L D P + E G ++H + R + + HE+K Sbjct: 328 KERIL----DAHIAPYVGESGELRGV--VAVLHDVTETRRLEQI--RSEFVANVSHELKT 379 Query: 213 GHSSVEKEKYDIFSQQ 228 +SV+ + Sbjct: 380 PVTSVKGFAETLLDGA 395 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 35/358 (9%), Positives = 90/358 (25%), Gaps = 48/358 (13%) Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + ++ + + E+S+ + + + G L+ Sbjct: 168 WFSLGLAMAVAFLISGWISYVLARKFTRPIEASIEVSNRLIEKDYDSRVRVNASGELRQL 227 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354 +K + DE E ++ + + G + N + +T Sbjct: 228 TKAINNLAHNLKQQMNE--IDENEQQLTAVLENMDSGVMLIQTSGRIMLVNRAMEEMTGL 285 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 S + I + + L+ + Sbjct: 286 SSGELIGKRHI-------EAGKSFGLSQLIDRSLKTGERFRDEVHLYYP-----KERILD 333 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI- 473 + E + + +TR +E + +A ++ E Sbjct: 334 AHIAPYVGESGELRGVVAVLHDVTETRR----LEQIRSEF----------VANVSHELKT 379 Query: 474 -ILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKIT 529 + S L G ++ + F + + L ++S DL + + Sbjct: 380 PVTSVKGFAETLLDGAMYDEATLREFLKIIYDES-----DRLHRLISDILDLSRIEQHRI 434 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 L ++ ++ + + TM E KQ + L + + + + Sbjct: 435 LLKMEQLNVVDV---------VAETVQTMRKRIEKKQLELVLPQKRHVMMEADKDRLR 483 >gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2] Length = 771 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 132/687 (19%), Positives = 260/687 (37%), Gaps = 73/687 (10%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK- 239 G+V ++R + L L H V + ++ + Sbjct: 90 IGVVRLDRPASI-ERLQNLLPGLIPSWGIAAGRHVIVTSADQRVLARVPGDEGTSAASSF 148 Query: 240 --VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + S T + +L S S+L ++ + G++ + Sbjct: 149 LDIISATPPLTRSAQQGTITQI-ILPSGASALATLHTVKSLPGQVIVIHEDTGSILRSDA 207 Query: 298 ESFEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-- 338 L D + +++ + + Sbjct: 208 ALQITLSATTGFVVLILGFAFHWQSTRAQEGDLINDAVRSRIDTALNRGRCGLWDWDLSR 267 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G + + + S L +S +D+ G ++ L+++ + ++ Sbjct: 268 GRI-FWSQSMFTLLGLESRNDLLTFGEVNALVNSDDIDLFAIGDQLIA----GNTDHID- 321 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 ++ + + + +N GI + + + + ++L + Sbjct: 322 HSFRMRHANGHWIWLRMRCELSQETQSDNKHLIGIAVDVTEQKSLAERTVEADLRLRDAI 381 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEIL 517 E + + + + ++ N +L P + + +E + L Sbjct: 382 ETIPEAFVLWDADNRLVLCNSHFQRLHKLPDIAVAPGTSYETVIEVGQMPEIRTRL--CD 439 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA--- 574 + + + L + ++ Y DI+ K + KL Sbjct: 440 NSGGSSPGARTFEAQLADGSWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLR 496 Query: 575 --------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTA 602 K AE+ + KS FLA +SHE+RTPL A Sbjct: 497 LRATVADLKISQYKLERQAIELADLARKYSEEKTRAEEANQTKSKFLANMSHELRTPLNA 556 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFSE++ + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+G+M L E + Sbjct: 557 IIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLDMEEL 616 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L + E++ +V A K++ + + ++IP I+AD R+VKQI +N+LSNA+ FTP G Sbjct: 617 DLARTLGESLKVVAGRAEHKQLELLSEIEDDIP-IVADRRAVKQILINLLSNAVKFTPDG 675 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G++ + + N ++L + D+G+G+ L + +PF Q+ + G+GLGL +AK Sbjct: 676 GRVTVRSRTLPNA-IVLMIADSGIGIAPQSLRRLGQPFEQVESQLSKTYHGSGLGLAIAK 734 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + G + ST GT++ + P Sbjct: 735 SLTTLHGGSMRLRSTLGAGTVVMVTLP 761 >gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein [Carboxydibrachium pacificum DSM 12653] Length = 456 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 28/372 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R ++ L +IL++ ++G+ + IL N + K+ G +D+ + Sbjct: 101 RETIEELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGRRVFEV 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 + S + + + + K L + I P S + L Sbjct: 161 IRS---SKLYEVFETLRKNKVLSSKSLELNFFNK---HLKVYISPILHPVSHVNLGFVLV 214 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G Sbjct: 215 IDDITEMRKLE--------------KMRSEFVANVSHELRTPLTSIRGFIETL---RSGA 257 Query: 618 LGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + NP E + + ID + ++ND+L +S+IE+ K E + +D+ + + + +++ Sbjct: 258 IENPEAREKFLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIME 317 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K I ++ I+A+ Q+ +N++ N I +T GG + +ST E+ Sbjct: 318 KAAKDKSITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLE-GEK 376 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I+ V D G+G+ ++ + + F ++ S+ + GTGLGL + K +V++ G+ + S Sbjct: 377 IIIEVEDNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436 Query: 797 TPAKGTLIEIIF 808 KGT I F Sbjct: 437 EVGKGTKFTIRF 448 >gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1085 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 129/819 (15%), Positives = 270/819 (32%), Gaps = 60/819 (7%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 ++ ++ + Q + + +SE F + + DA+ + Sbjct: 135 AQHRALETAHAQLEELERQHARAEARLRESEERFRLTAASDGIT-LYEQDANLRYVWLYP 193 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYV 159 + + +G ++ + ++L + + + GT Y Sbjct: 194 QHAE-----HGAALGRTDGELLPNAEGERLMQRKQEVLTQGTSCRVEVRAQLPAGTKYY- 247 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 D P + G G + L + Sbjct: 248 --DTFIAPRRDASGRIVGVAG--TALDVTDRRQREQSRQLLAAIVESSEDAIIALDLEGT 303 Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + + S+T + + + + + E + + Sbjct: 304 ITSWNQGSTRLFGYTAAETIGHSVTMLIPRERFHEEPQILERIRAGERIEHYETRRRRKD 363 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FV 335 + L+++ E +L + ++ V Sbjct: 364 GTELEISLSVSPLRDDRGEIVGASKIARDVTLRNRTERNRRFIAMLNERLASSDQPDEIV 423 Query: 336 YSHGNLF-------------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + L + + + L Y+ + AG L ++ Sbjct: 424 QTASRLVAQFLGAQDCCFSEWHDETGAALVHYEWGEPGRPAGTGVHRLCEFAPAEWRRQF 483 Query: 383 PVMLYRSDRTCIAASARL------------------HTIQWNRENSLAMTFIPFEKANQF 424 P +D T A A L W +A + ++ Sbjct: 484 PHEFRIADITREAPDAALVGKCQAAGVGSFATAGVTRKAPWIASIIVASQQPRTWRDDEM 543 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 V+ ++ + QL I + +A ++RE + N+ ++ Sbjct: 544 RLLKAVVARVWPLVERARSETALRTSEEQLRLITDHAPVSLAQVDRERRLKFVNQTYARR 603 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 FG D++ +P + + + +L + + E + + Sbjct: 604 FGREPHDLIGQPLKEVVGATAYARIQPHLDGAFAGRHVE-FETEIALPVGGTRWVHAVHT 662 Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + P + + + DI+ K+ + +++ A+ A + K DFLA +SHE+RTPL Sbjct: 663 PETAPDGTVIGVIVLITDITARKEAERQVALARDQALAAARAKDDFLAALSHELRTPLNP 722 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++ + P I ++ L +++DLLD+++I GK+ L PV Sbjct: 723 VLLIASDAAEN---PALAAEVRRDFATIRKNVELEARLIDDLLDVTRITHGKLPLDLRPV 779 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 S ++ + +A+S+++ A +KRI + T + + D ++Q+ N+L NA+ FTP+G Sbjct: 780 SAEQILQDALSVIRPDAEQKRITLVTELTAHRTTVRGDAVRLQQVFWNVLKNAVKFTPAG 839 Query: 723 GQIII-STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGL 778 G+I + S + + + VRD G+GMT E+ + F Q S R G GLGL Sbjct: 840 GRITVTSANLRGGDTLRVAVRDNGIGMTPAEIARVFDAFTQGDHAVGSNSHRFGGLGLGL 899 Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816 +++ +V+ + G S P +G I P+ T+ P Sbjct: 900 TISRLLVEQHHGDIRAESAGPGQGATFTIELPV--TTQP 936 Score = 47.3 bits (111), Expect = 0.011, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 48/166 (28%), Gaps = 12/166 (7%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--N 469 A+ + + + + E+++ + + + + + L A SDGI + + Sbjct: 124 ALLHRSRRRRDAQHRALETAHAQLEELERQHARAEARLRESEERFRLTAASDGITLYEQD 183 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + ++ L + L + E+L+ + Sbjct: 184 ANLRYVWLYPQHAE-----HGAALGRTDGELLPNAEGERLMQRKQEVLTQGTSCRV--EV 236 Query: 530 LGSTKEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572 K I ++ + T D+++ +Q + Sbjct: 237 RAQLPAGTKYYDTFIAPRRDASGRIVGVAGTALDVTDRRQREQSRQ 282 >gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 667 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 99/510 (19%), Positives = 202/510 (39%), Gaps = 33/510 (6%) Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 L V PF++ G N +F L D + ++ Sbjct: 25 QSHALLLDRVVGALSDPFYIKDPQGRFTLVNDAFCTLAGRSREDILGR--DAPSVFPGRA 82 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 S + +++ A + + + MT G+ Sbjct: 83 GSPSLKNDAMVMACG----FEDVAEETAFDADDRHRVFMTRKALHVDPDGGR--HVVGLI 136 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + +R + + I+E ++GI ++N + N + + G E++ Sbjct: 137 RDITNRKQAERALFASEARYRRIVETANEGIWVVNEHWRTVYANAVMGFMLGLTPEEMAD 196 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 +P + FL + L E+ + + + + I + +S + Sbjct: 197 RPVSDFLFPEDRDLHRAMLRRESLPPGGGLYER--RLRRADGQEIWVLIAVSSEYDASGH 254 Query: 555 ----SLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAI 603 +I+E K+ + L ++ S KS+FLA +SHEIRTPL + Sbjct: 255 FTGSVGMFSNITERKRAEESLRLSETRLAAAKEAAETASKAKSEFLANMSHEIRTPLNGL 314 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G +++++ + + SG + ++ D+LD+S++ESGK+ L + P S Sbjct: 315 LGMLQLLEDTDL----DADQRDCVVTALDSGRRLTRLLTDILDLSRVESGKLALVYAPFS 370 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 L E + ++ ++ + + + + +P ++ D ++Q+ LN++ NAI FT +G Sbjct: 371 LREVFASIQTVFATSLEQRGLTLEPTVSPAVPAMLIGDEGRIRQVLLNLVGNAIKFTRTG 430 Query: 723 GQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G I + + + E +IL V DTG+G+ +++ + F Q+ S +G GLG Sbjct: 431 G-IFLEAGSSPDPETGKVRLILSVGDTGIGIPREKIKAVFEAFTQVDASNTRIHQGAGLG 489 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 L + +V G+ ++ S P GT + Sbjct: 490 LSIVDRLVRLMDGQLWMDSEPGIGTCVMCT 519 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 33/351 (9%), Positives = 83/351 (23%), Gaps = 13/351 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G +++ G ++G V P+ ++ + Sbjct: 46 DPQGRFTLVNDAFCTLAGRSREDILGRDAPSVFPGRAGSPSLKNDAMVMACG-FEDVAEE 104 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + + + + G G++ + ++ + E Sbjct: 105 TAFDADDRHRVFMTRKALHVDPDG---GRHVVGLIRDITNRKQAERALFASEARYRRIVE 161 Query: 210 IKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 V E + + + ++++ +D L + Sbjct: 162 TANEGIWVVNEHWRTVYANAVMGFMLGLTPEEMADRPVSDFLFPEDRDLHRAMLRRESLP 221 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + + + S + ++ + +E L+ Sbjct: 222 PGGGLYERRLRRADGQEIWVLIAVSSEYDASGHFTGSVGMFSNITERKRAEESLRLSETR 281 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + S A FL ++ + G+ LL+ L + V Sbjct: 282 LAAAKEAAETASK-----AKSEFLANMSHEIRTPLNGLLGMLQLLEDTDLDADQRDCVVT 336 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 S R + + LA+ + PF F E Sbjct: 337 ALDSGRRLTRLLTDILDLSRVESGKLALVYAPFSLREVFASIQTVFATSLE 387 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 24/262 (9%), Positives = 64/262 (24%), Gaps = 16/262 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144 W ++ H + + +G +M + D D + + R+ + Sbjct: 167 IWVVNEHWRTVYANAVMGFMLGLTPEEMADRPVSDFLFPEDRD----LHRAMLRRESLPP 222 Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G + + +A Y + F+G G+ + + Sbjct: 223 GGGLYERRLRRADGQEIWVLIAVSSEYDASGHFTG--SVGMFSNITERKRAEESLRLSET 280 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + E + S + E S + P + + L + D Sbjct: 281 RLAAAKEAAETASKAKSEFLANMSHEIRTPLNGLLGMLQLLEDTDLDADQR-------DC 333 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + ++ ++ + + S + + ++ Sbjct: 334 VVTALDSGRRLTRLLTDILDLSRVESGKLALVYAPFSLREVFASIQTVFATSLEQRGLTL 393 Query: 323 PETVDKCPIPFFVYSHGNLFYA 344 TV + G + Sbjct: 394 EPTVSPAVPAMLIGDEGRIRQV 415 >gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 595 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ NR+G IL TN + + + Sbjct: 250 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEIIAP-L 306 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +N ++ + Q++E G T + L + + D++E + Sbjct: 307 PPQVNELFIRVVREEKEQSIELSLQGRT----WVILMTPLYDKTNVRGAVAVLRDMTEER 362 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + + E Sbjct: 363 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKE 406 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L++E V L + I Q A EK+I Sbjct: 407 MAKVIYDESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQID 466 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F N RI D ++Q+ N++ NAI T G + I + V + V+D+G Sbjct: 467 LSAEFDNEDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKI-IAEQNGGGVTIHVQDSG 525 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 526 TGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFT 585 Query: 806 IIFP 809 P Sbjct: 586 FHLP 589 >gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1169 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 130/782 (16%), Positives = 268/782 (34%), Gaps = 40/782 (5%) Query: 46 HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105 EQ + N +S++ + +D G I Sbjct: 172 ATKAEQKARDMAADIACKNQQLKESQDALDATLAAIP-DILFEMDEIGTYLAIRTNDEHL 230 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165 + +++G + DV + KRQ YG+ P+ + + + +A Sbjct: 231 LAASKNELMGRTVSDVLPPQAAAVVHQALAEAKRQGKSYGRVIKLPLAQGDAWFELSVAR 290 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 R I + +RL + E Y Sbjct: 291 KDRTDMEGS----RFIVISRDITSRHRAEEEAQRLSQVIEQSPESIVITDLKTHIIYANS 346 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-LPEQEDFHTINLNQYT 284 + + + ++ + + T+ T E+ + + + Y Sbjct: 347 AFKDASGYT-VEEAIGRPAAFLGSGRTPAATKDVMWFTLEQGKVWQGEFINRRKDGSDYL 405 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGN 340 ++ L+++S E Y++ + + ++ + + + + Sbjct: 406 EQVIISPLRDSSGEVTHYVAIKRDITTLRQQEQEIARDRKRLINVLSGTGAGPWEWDIDS 465 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 +S+ + L D ++ + Sbjct: 466 GKLILDGASSNLVGRSLAEF-GDDHLEAWFSRIHPEDRLVLEKSLADHLAGDSERFEIEY 524 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ ++ + + G+ + + + + + L S +EA Sbjct: 525 RIQHADQRWVWIQVRGKVIDWSKDRKPLTMYGVHLDITAHKQAEEQRQYLESILHSAIEA 584 Query: 461 TSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNH 511 +G ++ N + N +L+ G E+I+R + Sbjct: 585 IGEGFSVYNAADRLTWCNEQYRRLYTISAPAFVPGNSFEEIIRYGIEHGQYPEAQANPEA 644 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 ++ L + + + + L +R ++ DI+E L Sbjct: 645 WVQRRLLAHRQSESNF--IQKLADGRWLDVR---ERKTADGSIVGFRVDITE-------L 692 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 HAK+ AE + KS+FLA +SHEIRTP+ +I+G ++++ + +PR +Y I Sbjct: 693 MHAKQAAEAANRAKSEFLATMSHEIRTPMNSILGMAQIL---CGPDVSDPRSRDYGRVIL 749 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L I+ND+LD++K+ESG++ L P + + ++L + A K ++I + Sbjct: 750 ESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQLAQDILALFRGVAQGKGLIISAEWD 809 Query: 692 -NNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST--THTSNEEVILRVRDTGVG 747 LAD +KQ+ N++SNA+ FT G I IS + V DTG+G Sbjct: 810 GPRTQEYLADGYRLKQMLSNLVSNALKFTAIGSVDIRISEIDRTNDFATLEFSVTDTGIG 869 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +++ + + +PF Q S R G+GLGL + + + + G+ + S KG+ + Sbjct: 870 ISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRHLAELMGGEAGLESEEKKGSRLWFR 929 Query: 808 FP 809 P Sbjct: 930 IP 931 >gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158] gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158] Length = 1416 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 114/631 (18%), Positives = 223/631 (35%), Gaps = 27/631 (4%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 +G + E+E + ++ L L Sbjct: 654 RVGMAVRPFRDDQLGSVFLLVVFEEETDVRAEVRRADDANGSNAVLTQLENELHRTKQQL 713 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313 + S E E+ IN + + T + + E L N + Sbjct: 714 QLTIEQADVSTEELKASNEELQAINEELRSATEELETSKEELQSVNEELITVNAELQAKV 773 Query: 314 -YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + + I F+ + P+ + L + D ++ LD Sbjct: 774 EETAKANDDLQNLIASTGIATIFMDRGMRVKRFTPAAVGLFNLIATDVGRSLLDITHRLD 833 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+L+ + L +R + + N +P+ ++ + Sbjct: 834 YPELAADAVATFESLRLIERE----------VPSSDGNWYLARLLPYRTSDDRID--GAV 881 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVE 490 + + R + K+ +L E+TS+ I + N +G I++ N+ ++FGY + Sbjct: 882 LTLTDITERRRAEAKLRANEARLRLAAESTSNFAIIVQNMDGTIVTWNKGAERVFGYSED 941 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +++ +P + S + L R E+ L E+ + Sbjct: 942 EVIGRPIDMIYLPEDRSHGAVEREQAQRLG-RSDDERWYLRKDGEKIYCGGEVTFINDDT 1000 Query: 551 SSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++ D++E K + + ++ E+ + K +F A +SHE++ PL I Sbjct: 1001 FKGFAKIARDLTERKSIEKRQFDQLATERSMREKTEEANRIKDEFFAVLSHELKNPLNLI 1060 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +E + + + N I RS I++DLLD+S+ +GK+ L P Sbjct: 1061 HVKAE-LLSLAPETRELDVVRDAVNAIQRSVMSQAKIIDDLLDMSRARTGKLTLDRVPTD 1119 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L + + + A + I + A+ + AD V+QI N+LSNA+ FTP+GG Sbjct: 1120 LAALLRTLVDACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWNLLSNALKFTPAGG 1179 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++ + + V DTG G+ L K F Q + G G+GL L K Sbjct: 1180 TVTLTLAREGDG-ARVDVADTGNGIAPDFLPKIFDMFSQASVPRSRSTHGLGIGLSLVKH 1238 Query: 784 MVDANMGKFYIFS-TPAKGTLIEIIFPLYDT 813 + + + G+ S G+ + P + + Sbjct: 1239 LAEMHGGRIEAHSDGIGHGSRFRLWLPAHAS 1269 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 26/307 (8%), Positives = 61/307 (19%), Gaps = 32/307 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + ++ + G ++IG + + + +R + Sbjct: 922 DGTIVTWNKGAERVFGYSEDEVIGRPIDMIYLPEDRSHGAVEREQAQRLGRSDDERWYLR 981 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G +Y + + F GF I + E Sbjct: 982 KDGEKIY----CGGEVTFINDDTFKGFAK--IARDLTERKSIEKRQFDQLATERSMRE-- 1033 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 R+K++ ++ + L K LL+ + Sbjct: 1034 -----------------KTEEANRIKDEFFAVLSHELKNPLNLIHVKAELLSLAPETREL 1076 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 +N Q + + + L + D + Sbjct: 1077 DVVRDAVNAIQRSVMSQAKIIDDL-------LDMSRARTGKLTLDRVPTDLAALLRTLVD 1129 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + D + + L LL + + Sbjct: 1130 ACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWNLLSNALKFTPAGGTVTLTLAREG 1189 Query: 392 TCIAASA 398 Sbjct: 1190 DGARVDV 1196 >gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 841 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 102/515 (19%), Positives = 194/515 (37%), Gaps = 16/515 (3%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356 + + + A E+ + F G L + N + T S Sbjct: 327 RRVQQSAQQAMEKAQARIARSEHEMAVLMRSVQELIFRTDSHGRLTFVNARWEQWTGQPS 386 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + L ++ + + +A + E + Sbjct: 387 AEAVGQP--LEGIVHEACRP------QIQALLDPQAKLALRNCQARFRLPDEREILCDIA 438 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + G + +++++ ++ + E T + + + + + Sbjct: 439 VVPL-LREGRLVGFAGSAVDVTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVAL 497 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N+A FG +L + + H +++ LE Sbjct: 498 VNKAWEDFFGRGRYAVLGNEVEGLHSGDHDLLQMHSNQDVMRSGQPMVLEARLPHVDGSY 557 Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + + K D+SE++ ++ A+ AE+ KS+F+A +SH Sbjct: 558 RDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATHEARDAAEEAFRVKSEFVANMSH 617 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL +I+GF+E+ GN E + I +G +L +VNDLLD++K+ES Sbjct: 618 ELRTPLQSIMGFAEL---GGLRSHGNAAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAV 674 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 +H E L + + ++ K I +R + AD +Q+ N+L+N Sbjct: 675 GTIHLERTDLRSLIRPVVRELEPQQQHKLIDLRLELDDTPLIAKADPVRFQQVVRNVLAN 734 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI F+P GG+I + ++ + V D G G+ EL+K +PF Q ++ GT Sbjct: 735 AIKFSPIGGRIDVQGRIDGQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTKNGS-GGT 793 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + + ++DA G + PA G + I P Sbjct: 794 GLGLAICRKIIDAMDGTIVASNGPAGGAMFCITLP 828 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 52/404 (12%), Positives = 116/404 (28%), Gaps = 27/404 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + D+HG L ++ + G + + +G L + I LL Q Sbjct: 361 LIFRTDSHGRLTFVNARWEQWTGQPSAEAVGQPLEGIVHEAC---RPQIQALLDPQAKLA 417 Query: 145 GKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + + D+A +P+ R GF G + + + Sbjct: 418 LRNCQARFRLPDEREILCDIAVVPLL-REGRLVGFAGSAV--DVTARWKAQQELQTQLAF 474 Query: 204 FSHLHEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L E V + + + R + + ++ D+L+ Sbjct: 475 QHLLFETTPLPMLVTDADQRVALVNKAWEDFFGRGRYAVLGNEVEGLHSGDHDLLQMHSN 534 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + ++ + + ++N LS S + Sbjct: 535 QDVMRSGQPMVLEARLPHVDGSYRDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHAT 594 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---DDIEIAGGLSTLLDAPKLS 376 + + ++ + + F AN S L T +S+ ++ A S Sbjct: 595 HEARDAAEEA------FRVKSEFVANMSHELRTPLQSIMGFAELGGLRSHGNAAMAEMFS 648 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D +A ML + A + E + + I P+ + Sbjct: 649 DIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRSLIRPVVRELEPQQQHKLIDLRL 708 Query: 437 DVDTRINKRKM------EIEVMQLCSILEATSDGIAIINREGII 474 ++D K ++ L + ++ + G I+ +G I Sbjct: 709 ELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIG-GRIDVQGRI 751 >gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 348 bits (893), Expect = 3e-93, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 22/392 (5%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + ++ + + + I+ ++ +L +IL++ +G+ + IL Sbjct: 80 IKSIDEIGQLSFAINTMSDKLQETID--ELYDRNAKLEAILKSLVNGVVAFDENERILLI 137 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N + + G + K + S + L +I+ K K Sbjct: 138 NDSARTMLGIKDNYAVGKHILDVVR---NSKFHDVLEKIIKDKGYNIDNFEIDTFNKHLK 194 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + S I+ + + + ++DI+E ++ + +SDF+A VSHE+R Sbjct: 195 IYSSPIVHQVTHKKLGFVVIINDITEIRKLE--------------KIRSDFVANVSHELR 240 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPLT+I GF E ++ + R + I+ + ++ND+L +S+IE+ K Sbjct: 241 TPLTSIRGFIETLREGAIDNI--ERRDRFLEIIEFEAERLTRLINDILTLSEIENLKEGF 298 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E + +DE ++E +++ A +K I + I ++Q+ +N++ N I Sbjct: 299 VKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDRLRQMIINLVDNGIK 358 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +TP GG + ++TT N +++ V D+G+G++ + + + F ++ + + GTGLG Sbjct: 359 YTPEGGYVKVTTTDMENN-IVIEVEDSGIGISKENIPRLFERFYRVDKGRSRKLGGTGLG 417 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + K +V++ G + S KGT I+ P Sbjct: 418 LAIVKHIVESMKGSITVESEVGKGTKFAIVLP 449 >gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] Length = 607 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 186/384 (48%), Gaps = 17/384 (4%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +E + + SD I+ +R G + + AV L G P + + Sbjct: 199 LSVEEERYRLLALHMSDVISRHSRNGAVQFISPAVETLLGLPAARLAGHGLFDRVHVADR 258 Query: 507 SVMNHYLTEILSLDLRQTLEKITLG---STKEEK-----LLSLRIIIKKLP--------F 550 L++ +++E + + L + + Sbjct: 259 PAYLKALSDAGLGGEGRSVEFRVRREVARDDRGRPTAPEFIWLEMRCRPFAPGTQSSAAG 318 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + M D+++ K ++ L A+ A + + KS FLA +SHE+RTPL AIIGFS++I Sbjct: 319 ETGVVAVMRDVTDRKLQEQALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMI 378 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ L R EYA I+ SG +L +VN +LD+SK+ESG + EP + A+ Sbjct: 379 LHEDELMLAPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLN 438 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +L+ L A E I + T ++P I+ D R+ KQI LN++SNAI FT GG + + Sbjct: 439 CCNLLALKARENGIELVTRAPEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAA 498 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + ++LRVRD GVG+ +L++ PF Q + Q R EGTGLGL + K++V + G Sbjct: 499 VEA-ARLVLRVRDNGVGIAAEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGG 557 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814 K + S +GT++ I PL ++ Sbjct: 558 KIDVTSEVDRGTIVTISLPLAPSA 581 >gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641] Length = 1522 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 112/651 (17%), Positives = 229/651 (35%), Gaps = 36/651 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + D + AL + + ++K+ V I + K+ Sbjct: 369 LARNMTADLERLALVAKNTSNAVVITDVKRNIVWVNDGFERITGYSQDEVIGKSPGKLLQ 428 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + D + S + T + +Y + N+ E + Sbjct: 429 CSNT-----DQSVATEMKTALDAGESFKGEIVNRTKSGQEYWIELEIQPRYNDKNELIGF 483 Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355 ++ + S + + + + G + N +F ++ Y Sbjct: 484 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADRDGIITDVNDAFCTISGYS 543 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + I + L + + + ++ I+ + + + + Sbjct: 544 REELIGQ----TYRLVDSHTHSTDFWQSMWNNIANG--ISWRGEICNKAKDG-SLYWVDT 596 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 N + I+ + + + + I QL + GI N Sbjct: 597 TIAPFNNSDGQIERYISIQVDITANKNQQANLIIARNQLVRAADVAELGIWTWNITENTF 656 Query: 476 STNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 S + ++ ++G P E++ P L + + L + + Sbjct: 657 SFDDRMNDIYGVP-EELHNAPIPLSYWYSCLHPEDIPDVKSAIKTALENESVYRQIFRIV 715 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + +++ DI++ ++ ++ L A++ AE+ + KS F Sbjct: 716 VRD-QIHFIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKTAREAAEEANKAKSAF 774 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTP+ AI+G +++ + + +YA + + +L ++ND+LD S Sbjct: 775 LANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFS 830 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 KIESGKM L P + + + ++ K++ + ++P+ + D ++QI Sbjct: 831 KIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSLPQFVEGDSMRLQQI 890 Query: 708 ALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 N+ NA+ FT G ++ I + V L VRDTG+G+ E F Q Sbjct: 891 LTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQAE 950 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 S R GTGLGL +++ V G + S P +G+L L S+ Sbjct: 951 ASTTRRFGGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTLTLSLPSY 1001 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 52/448 (11%), Positives = 117/448 (26%), Gaps = 47/448 (10%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 EF G RGFG + + + + Y I + Sbjct: 111 EFPGVRGFGFIQRVQRSQLNEFIADTRADGAPTFALHQLQDKQHND-LYIIKYVAPAEKN 169 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 ++ + P L+ + L K Sbjct: 170 QGVEGLDIGSESVRREAALLAINSGKPTLSGTIHLVQSNVKTPGALLFVPVYKSGSNPTT 229 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPETVDKCPIPF---FVYSHGNLFYAN 345 +++ + ++ + + E D V+ Y N Sbjct: 230 IAERQASLLGLLYSPIVIADLLRDIPEFMNGRVDVELFDSLNDLSNKTMVFDADGSKYDN 289 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 +++ + + + + + L S A Sbjct: 290 --------LIPDEELHDEAIAARIFHNTSVLP-LPGREMTLRVSSTPVFEALT------- 333 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 E + F + + R M ++ +L + + TS+ + Sbjct: 334 --ERYVPWLVFAFGLLLSSALALLIRQQVSGRNRAEMLARNMTADLERLALVAKNTSNAV 391 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQT 524 I + + I+ N ++ GY ++++ K L+ NT + + L ++ Sbjct: 392 VITDVKRNIVWVNDGFERITGYSQDEVIGKSPGKLLQCSNTDQSVATEMKTALDAG--ES 449 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + TK + + + I+ + DISE K +L E Sbjct: 450 FKGEIVNRTKSGQEYWIELEIQPRYNDKNELIGFMAIESDISERKATYQRL-------EA 502 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + L+ ++ L II ++ Sbjct: 503 ALRENNALLSTLN------LHGIISTAD 524 Score = 80.8 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 33/377 (8%), Positives = 97/377 (25%), Gaps = 21/377 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146 D + +++ + G ++IG + + D + L ++ G+ Sbjct: 394 TDVKRNIVWVNDGFERITGYSQDEVIGKSPGKLLQCSNTDQSVATEMKTALDAGESFKGE 453 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G I+L P Y+ E GF I + ++ + Sbjct: 454 IVNRTKSG--QEYWIELEIQPRYNDKNELIGFM--AIESDISERKATYQRLEAALRENNA 509 Query: 207 LHEIKKGHSSVEKEKYD----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L H + D + + ++ T + Sbjct: 510 LLSTLNLHGIISTADRDGIITDVNDAFCTISGYSREELIGQTYRLVDSHTHSTDFWQSMW 569 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317 + + + + + + + Y N+ + Y+S + + + Sbjct: 570 NNIANGISWRGEICNKAKDGSLYWVDTTIAPFNNSDGQIERYISIQVDITANKNQQANLI 629 Query: 318 -GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 N D + + ++ N F + + +++ A + + Sbjct: 630 IARNQLVRAADVAELGIWTWNITENTFSFDDRMNDIYGVP--EELHNAPIPLSYWYSCLH 687 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + + + + + + ++ + M GI Sbjct: 688 PEDIPDVKSAIKTALENESVYRQIFRIVVRD--QIHFIQSTGTVERDESGKAMLMMGINR 745 Query: 436 EDVDTRINKRKMEIEVM 452 + R + ++ Sbjct: 746 DITQQREAEDILKTARE 762 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 73/251 (29%), Gaps = 12/251 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++ G ++IG V S D + + + +W G+ Sbjct: 524 DRDGIITDVNDAFCTISGYSREELIGQTYRLVDSHTHSTDFWQSMWNNIANGISWRGEIC 583 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ +V +A P + + + + + + + +A + Sbjct: 584 NKAKDGSLYWVDTTIA--PFNNSDGQIERYISIQV--DITANKNQQANLIIARNQLVRAA 639 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + + FS P L S H +D+ + Sbjct: 640 DVAELGIWTWNITENTFSFDDRMNDIYGVPEELHNAPIPLSYWYSCLHPEDIPDVKSAIK 699 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E S+ Q + + + ++ S ++ + + ++ Sbjct: 700 TALENESVYRQIFRIVVRDQIHFIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKT 759 Query: 322 TPETVDKCPIP 332 E ++ Sbjct: 760 AREAAEEANKA 770 >gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909] Length = 1521 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 115/649 (17%), Positives = 231/649 (35%), Gaps = 40/649 (6%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + + + AL + + ++K+ V + I + K+ Sbjct: 368 LARNMTANLERLALVAKNTSNAVVITDVKRNIVWVNEGFERITGYSLAEALGKSPGKLLQ 427 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + D + S + T + +Y + N+ E + Sbjct: 428 CSNT-----DQGVARAMKIALDAGESFKGEIVNRTKSGREYWIELEIQPRYNDKNEPIGF 482 Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355 ++ + S + + + + G + N +F ++ Y Sbjct: 483 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADREGIITDVNDAFCNISGYS 542 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + I + L + + ++ I+ + + + + Sbjct: 543 REELIGQ----TYRLVDSHTHSTAFWQSMWNDIANG--ISWRGEICNKAKDG-SLYWVDT 595 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGII 474 N + I+ + + + + I QL + GI N EG Sbjct: 596 TIAPFNNSTGQIERYISIQVDITANKNQQTNLIIARNQLVRAADVAELGIWTWNIPEGT- 654 Query: 475 LSTNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 LS + ++ ++G P E++ P + + + L + Sbjct: 655 LSFDDRMNDIYGVP-EELHNAPIPLTYWYSLVHPEDIPEVKRAIKVALENESVYRQVFRI 713 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + +++ DI++ ++ +N L A++ AE+ + KS Sbjct: 714 IVRN-QVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSA 772 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTP+ AI+G +++ + + +YA + + +L ++ND+LD Sbjct: 773 FLANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLHLLNDILDF 828 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIESGKM L P + + + ++ K++ + +P+ + D ++Q Sbjct: 829 SKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALPQFVEGDSMRLQQ 888 Query: 707 IALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQI 763 I N+ NA+ FT G ++ I + V L VRDTG+G+ E F Q Sbjct: 889 ILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQA 948 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 S R GTGLGL +++ V G + S P +G+L I PL Sbjct: 949 EASTTRRFGGTGLGLVISQRFVALMGGTLALESQPGQGSLFHFTITLPL 997 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 58/448 (12%), Positives = 113/448 (25%), Gaps = 47/448 (10%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 EF G RGFG + + + + Y I + Sbjct: 110 EFPGVRGFGFIQRVPRSQLNEFITDTRADGAPAFALRQLQDKQHDD-LYIIKYIAPAEKN 168 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTL 292 + + P L+ + L K + T Sbjct: 169 QGAEGLDIGSESIRREAALLAINSGKPTLSGTIHLVQSNVKTPGTLLFVPVYKSGTYPTT 228 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF---FVYSHGNLFYAN 345 Q + S L + D E + E D ++ Y N Sbjct: 229 QAERQASLVGLLYSPIVIADLLRDIPEFMNGRVDVELFDSLNDLSNKTMIFDADGSKYGN 288 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + + + + + + L S A Sbjct: 289 --------LIPNEKHHDGAIAARIFHNTSVLP-LPGREMTLRVSSTPVFEAFT------- 332 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 E F + + R M + +L + + TS+ + Sbjct: 333 --ERYAPWLVFAFGFLLSSALALLIRQQISGRNRAEMLARNMTANLERLALVAKNTSNAV 390 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQT 524 I + + I+ N ++ GY + + L K L+ NT + + L ++ Sbjct: 391 VITDVKRNIVWVNEGFERITGYSLAEALGKSPGKLLQCSNTDQGVARAMKIALDAG--ES 448 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + TK + + + I+ + DISE K +L E Sbjct: 449 FKGEIVNRTKSGREYWIELEIQPRYNDKNEPIGFMAIESDISERKATYQRL-------EA 501 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + L+ ++ L II ++ Sbjct: 502 ALRENNALLSTLN------LHGIISTAD 523 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 35/377 (9%), Positives = 95/377 (25%), Gaps = 21/377 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146 D + ++E + G + +G + + D L ++ G+ Sbjct: 393 TDVKRNIVWVNEGFERITGYSLAEALGKSPGKLLQCSNTDQGVARAMKIALDAGESFKGE 452 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G I+L P Y+ E GF I + ++ + Sbjct: 453 IVNRTKSGREY--WIELEIQPRYNDKNEPIGFM--AIESDISERKATYQRLEAALRENNA 508 Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L G S + I ++ + ++ T + Sbjct: 509 LLSTLNLHGIISTADREGIITDVNDAFCNISGYSREELIGQTYRLVDSHTHSTAFWQSMW 568 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317 + + + + + + Y N++ + Y+S + + + Sbjct: 569 NDIANGISWRGEICNKAKDGSLYWVDTTIAPFNNSTGQIERYISIQVDITANKNQQTNLI 628 Query: 318 -GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 N D + + ++ + + +++ A T + Sbjct: 629 IARNQLVRAADVAELGIWTWNIPEGTLSFDDRMNDIYGVP--EELHNAPIPLTYWYSLVH 686 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + + I N + + ++ + M GI Sbjct: 687 PEDIPEVKRAIKVALENESVYRQVFRIIVRN--QVHFIQSTGTVERDESGKAMLMMGINR 744 Query: 436 EDVDTRINKRKMEIEVM 452 + R + ++ Sbjct: 745 DITQQREAENILKTARE 761 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 39/336 (11%), Positives = 96/336 (28%), Gaps = 24/336 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++ G ++IG V S + + + +W G+ Sbjct: 523 DREGIITDVNDAFCNISGYSREELIGQTYRLVDSHTHSTAFWQSMWNDIANGISWRGEIC 582 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ +V +A P + + + + + + + + Sbjct: 583 NKAKDGSLYWVDTTIA--PFNNSTGQIERYISIQV--DITANKNQQTNLIIARNQLVRAA 638 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + S P L + H +D+ + ++ Sbjct: 639 DVAELGIWTWNIPEGTLSFDDRMNDIYGVPEELHNAPIPLTYWYSLVHPEDIPEVKRAIK 698 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E S+ Q + + + ++ S ++ + + + Sbjct: 699 VALENESVYRQVFRIIVRNQVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKT 758 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ET ++ A +FL ++ + G+ TLL L A Sbjct: 759 ARETAEEANK------------AKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQAD 806 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 V + RT + + +A+ IP Sbjct: 807 YAVKSEAATRTLLHLLNDILDFSKIESGKMALECIP 842 >gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 975 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 118/808 (14%), Positives = 245/808 (30%), Gaps = 74/808 (9%) Query: 50 EQSNFTDQNQESVSNTN--YLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEIS------E 100 + + +++ YL + + F G+ + + E Sbjct: 23 AREPAPALPRPALTEAELAYLAARPVLRVGVGQGQIPFQDVVTSPQGHPRYVGLAADYLE 82 Query: 101 ELPKTIGNYAFKMIGMRLC---DVSDILHID------PNNHIGDLLKRQNTWYGKTTLWP 151 L +G G+ +++ ID L + + Sbjct: 83 TLSAMLGVALEPSFGISYARALELAQTGGIDLFACISDTPARRAYLHMTTPYASQPYAMI 142 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + V + + + R +F Sbjct: 143 TRAGSDAVW------SVPDLAGRVVAVSPSYVAY---ERLQQEYPALRARFEFKRNAPET 193 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP---LLTSEESS 268 + + + + +R + D P L + + Sbjct: 194 LQAVADGQADACFLNVVAATSIIREYGLTNLRITAVMAWPDNALCMASPDPVLAGIIQKA 253 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------------------- 308 L I L ++ + +L+ Sbjct: 254 LDAIPVDRRIALAARWYDAGPLPAKSYVRPIQLWLAAGAVALVALCVWWWRRLRREVARR 313 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + ++ V ++ N + + Sbjct: 314 EATERDLCRHRETLEAVLNATTDAILVLDEAYHVVMVNRTGAERFGLAVEAMLGQG---- 369 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + A + ++ T ++ + + Sbjct: 370 --ILELTDAPVAASRRQHYRQAQATGRPVRFT------DKRAGRVYENTIYPIPALAGDR 421 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486 + + + + +L +I + + + +G +L N A S G Sbjct: 422 PRLAIYARDVTEQIAADQAVRQSQERLANIFRLSPVIVTVTTLPDGRLLDVNEAFSAYSG 481 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + E+++ + T P + + + LE L Sbjct: 482 FSREEVIDRTPTELGLWAHPGDRDRIFRAVERDGQVRNLELSMRMRDGRLATFLLSCTPM 541 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + C + DIS K + L AK+ AE + KS FL+ +SHEIRTP+ I+G Sbjct: 542 EAYGRHCLLSVLVDISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTPMNTILGM 601 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +V++ R E+ ++ +G ++ ++ D+L++SKIESG + L E Sbjct: 602 VDVLRGTELSG----RQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEAAYDPLE 657 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725 + ++L+ A K + +R + P + + D ++QI +N++ NAI FT +G ++ Sbjct: 658 LAGQVVALLSPQAQAKGLTLRLEAGKDAPRQAVGDPDRIRQILINLVGNAIKFTAAG-EV 716 Query: 726 IISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + EE++ V DTG+G+ + E KPF Q+ +S GTGLGL + Sbjct: 717 ALKLSLLPARLSREELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAIC 776 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +VD G+ ++ S P G++ P Sbjct: 777 ALLVDGMNGRLWLESEPGAGSVFYCALP 804 >gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1258 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 115/535 (21%), Positives = 212/535 (39%), Gaps = 35/535 (6%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 E + D P + NP+F L Y+ ++ Sbjct: 310 DRTVQIQYENELREQKVFFKSLFDNAPEAIIHVGANREIKMLNPAFTELFGYR----LDE 365 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G +T + + SD +D + R+ + A T N Sbjct: 366 LQGQTTQVLYAEESDFIKRGQAY--NADMKDVLNRYRVSYKSKQGKIFHAETIGSII-RN 422 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + ++KM ++L +A G+ + + L + + Sbjct: 423 ADGNLGGYIAHIRDVTERLAVEQKMIDTNLRLSIAADAAGIGVWEFDLQDSTLQWDDWMY 482 Query: 483 KLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLD-----------LRQTLEKIT 529 +L+G+ ++ + + + + + + + + + L+ Sbjct: 483 RLYGFAEDERTSPLQVWDDCVYTEDKNRLAEVFSSLERSGAYFTTKEDASHISKELDFDF 542 Query: 530 LGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 K+ ++ L I+ K +S DI+ K+ + L +A A S K Sbjct: 543 RIKRKDGQVRYLKSNGAIVFNKKGQASHLVGVNMDITSRKETEVLLRNASDQAVAASKAK 602 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 SDFLA +SHEIRTPL ++G +E++ + NP N + SG +L ++NDLL Sbjct: 603 SDFLATMSHEIRTPLNGVLGMAELLSGTKL----NPEQTTQLNVLKESGEGLLGLINDLL 658 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D SKIE+G +++ +L++A+ + I L+ + A+EK I + + PR ++ D+ + Sbjct: 659 DFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRADEKGIDLLVEYDEVCPRFLVGDVFRI 718 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT--HTSNEEV--ILRVRDTGVGMTNYELEKAMKPF 760 KQI N++SNAI FT G +++S + V + V DTGVG+ + F Sbjct: 719 KQILTNLISNAIKFTSIG-HVLVSVKGIVDKHGMVSITISVADTGVGIADKVQPHLFTAF 777 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 Q +S + GTGLGL + K ++ G + S G+ + F L ++ Sbjct: 778 VQADSSTTRKFGGTGLGLAITKQLIGLMNGNISLSSKLNVGSTFTVTFALPESHA 832 >gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 483 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 90/418 (21%), Positives = 181/418 (43%), Gaps = 18/418 (4%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + L + + G + R ++++ +L SIL++ G+ Sbjct: 30 RGQWWLLPLALLLGLLPAAYLDHLLAGFRRDSEQQRQTEQRLRDSEGRLSSILQSIGAGV 89 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLR 522 +++G + N +L G+ + D L +P L + + + L ++L Sbjct: 90 IATDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEI 149 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAE 579 + + + + + + + + S D ++ ++ L AK+ AE Sbjct: 150 IDWRERLMLTPRRGEPCPVACTVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAE 209 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K +FLA +SHEIRTPLTA++G ++++ R + +Y +G +LD Sbjct: 210 GALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRL----DSHQRQYVAASRAAGENLLD 265 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 ++N +LD+SKIE+G++ + LD+ V + ++ L A ++ + + P ++ Sbjct: 266 LINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVM 325 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYE 752 D ++Q+ +N++ NAI FT G ++++ V DTG+G+ + Sbjct: 326 GDPTRIRQVLVNLIGNAIKFTEEG-RVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAK 384 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E + F Q +S R GTGLGL +++ +V G+ + S G+ + PL Sbjct: 385 QEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREGGGSTFTMEIPL 442 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 37/158 (23%), Gaps = 4/158 (2%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362 + E + G L + NP LT + VD + Sbjct: 60 DSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLVDALNR 119 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G L + S P+ D I RL E + A+ Sbjct: 120 PVG-EVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEP-CPVACTVAPIAS 177 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + R + + Q L A Sbjct: 178 FSG-IIGAVFVFRDTRREREIQSHLLAAKEQAEGALRA 214 Score = 41.9 bits (97), Expect = 0.44, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 13/144 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNT-- 142 D G L ++ + G + + +V + + + + +L+ Sbjct: 92 TDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEIID 151 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLD 201 W + L P G V +A + FSG G + R + + ++ Sbjct: 152 WRERLMLTPRRGEPCPVACTVAPIA------SFSGIIGAVFVFRDTRREREIQSHLLAAK 205 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 206 EQAEGALRAKGEFLAGMSHEIRTP 229 >gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 421 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 177/385 (45%), Gaps = 22/385 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I + D + + + + + E G+A+++ G + NRA+ ++ GY Sbjct: 53 VISIIKDITDRKKIEENLRQSEERFRTAFENAGSGMALVSLNGYFIKVNRALCQILGYDS 112 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 D+L K T + + +S + K K++ + + + L Sbjct: 113 PDLLTKKVTEIITGEELLKDFDLAYQFIS-GQITNYQVEKSCLHKSGKIIWVLLNVSLLS 171 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + + DISE + + K++F++ VSHE+RTPLTAI G Sbjct: 172 DVNGKPLHFIWQIQDISEQHEVE--------------QLKNEFVSVVSHELRTPLTAIKG 217 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 E++ + + +L +VN++L++ ++SGKM L+ E ++ Sbjct: 218 ALEILATGILVDEPRE-AEQMLKIAVSNSERLLRLVNNILNLEMLDSGKMRLNLELCDIN 276 Query: 666 EAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 V +A+ VQ A +KR+ I S + +ILAD ++ Q+ N+LSN++ F+ +G + Sbjct: 277 IMVKQAMETVQPIAQQKRMEISYSTLDVHNSKILADEETIIQVLTNLLSNSVKFSHAGTK 336 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + I T ++E+I+ V+D G G+ +L+ + F Q+ S + GTGLGL + K + Sbjct: 337 VEIYTKM-GDKEIIIAVKDYGKGIPADKLKTIFERFEQVDVSDARQNGGTGLGLAICKNI 395 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 V+ + GK +I ST G+ P Sbjct: 396 VEKHQGKIWIESTLDSGSTFYFTLP 420 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 8/108 (7%), Positives = 35/108 (32%), Gaps = 2/108 (1%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + +GY +++ L + +G + ++ ++ ++ + + + + Sbjct: 91 VSLNGYFIKVNRALCQILGYDSPDLLTKKVTEIITGEELLKDFDLAYQFISGQITNYQVE 150 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + + + + L + N + F + ++ L Sbjct: 151 KSCLHKSGKIIWVLLNVSLLSDVNGKPLHFIW--QIQDISEQHEVEQL 196 Score = 41.9 bits (97), Expect = 0.42, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%) Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++ + + LE L + E K + + C + DI++ K+ + L Sbjct: 13 EQLKNQGYVRNLEFDWLIKSGEVKTSLVSCEPIVIDNKDCVISIIKDITDRKKIEENLRQ 72 Query: 574 AKKIAEKESSHKSDFLARVS 593 +++ + +A VS Sbjct: 73 SEERFRTAFENAGSGMALVS 92 >gi|239908403|ref|YP_002955145.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798270|dbj|BAH77259.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 855 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 111/694 (15%), Positives = 218/694 (31%), Gaps = 84/694 (12%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + L K + + DI + + + + Sbjct: 3 PTPRPENREPLTAEHAKILLAAAGDIAAILAPDGRIQDIGAPGAALLGPDEAHLAGTDFM 62 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYL 303 + D ++ + ++P + + + +L L Sbjct: 63 EHLAPGDGRDRLRHAFAAIQGGAVPPKPMAADLLTAGGSISLFWSMTSLPGPGGRPKAVL 122 Query: 304 -----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKS 356 + P L+ E E + F+ G AN + L Y Sbjct: 123 ISGRLPVSSCPPLAEGACESEADYRAVFNAASDAIFIQDAATGIFLDANDRAVSLYGYAR 182 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + L L S + A RL + Sbjct: 183 DE-------LRRLDPERLSSGFPPYTLADALINLGQAAAGQPRLFDWLARDKAGRLFWVE 235 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IIL 475 + + + + + +R + + + EA + + + + I Sbjct: 236 VSLRGMDTGRPGRVIAVVRDISERKTTERALRESEKKFRQLAEAIGEVFWLGSPDWKRIY 295 Query: 476 STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + A +L+G+ + + P + + + + Y+ ++ LR Sbjct: 296 YISPAYERLWGHTTKSLYDAPMSWLDAVHPDDRDRVLRYIADLAGRPLRPGQFPEYRIVR 355 Query: 534 KEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS--- 586 + + + I + + DI++ + L + E ++ Sbjct: 356 PDGSMRWIAARIFPVIDDAGVVYRVAGIAEDITDRVLSRQDLERVNERLEDMVRERTRTL 415 Query: 587 ------------------------------------DFLARVSHEIRTPLTAIIGFSEVI 610 +FLA +SHEIRTP+ I+G ++V+ Sbjct: 416 NRMNQELIHEVTERREAEAAMAQAKEAAEAASQAKSEFLANMSHEIRTPMNGILGMAQVL 475 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + Y I+ S +L ++ND+LD SKIE+ ++ L EP SL +S Sbjct: 476 GQTDL----DAAQASYLRDIEDSAASLLKLINDILDFSKIEADRLELAQEPFSLRGLLSL 531 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + + + A EK + + A P IL D ++Q+ +N++ NAI FT GG I+IS Sbjct: 532 IEASLGVLAREKGLGLSVEVAPETPDILIGDADRLRQVLVNLVGNAIKFTTRGG-IVISA 590 Query: 730 THTSNE----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 + E++ V DTG+G+ + + + F Q S R G Sbjct: 591 RPAEPDPDVTLPGEAETTEATREILFSVSDTGIGIRPEDAGRIFEAFTQADGSYTRRFGG 650 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 TGLGL +++ + G + S P +G+ + Sbjct: 651 TGLGLAISRRLARLMGGDISLDSEPGQGSTFTLS 684 Score = 88.2 bits (217), Expect = 6e-15, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 79/289 (27%), Gaps = 11/289 (3%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 + R + + L D I + G + L + Sbjct: 2 PPTPRPENREPLTAEHAKILLAAAGD---IAAILAPDGRIQDIGAPGAALLG-PDEAHLA 57 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + L + ++ + SL + Sbjct: 58 GTDFMEHL---APGDGRDRLRHAFAAIQGGAVPPKPMAADLLTAGGSISLFWSMTSLPGP 114 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480 P+ + +G P + + E E ++ A SD I I + GI L N Sbjct: 115 GGRPKAVLISGRLPVSSCPPLAEGACESEAD-YRAVFNAASDAIFIQDAATGIFLDANDR 173 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 L+GY +++ R P + L + Q L K +L Sbjct: 174 AVSLYGYARDELRRLDPERLSSGFPPYTLADALINLGQAAAGQPRLFDWLARDKAGRLFW 233 Query: 541 LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + ++ + + DISE K + L ++K + + + Sbjct: 234 VEVSLRGMDTGRPGRVIAVVRDISERKTTERALRESEKKFRQLAEAIGE 282 >gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 650 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 96/495 (19%), Positives = 192/495 (38%), Gaps = 29/495 (5%) Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------S 397 F + + +++ +L L + I + + + + Sbjct: 28 AEFTCVNRCSEFEEVLKTLFPDLILSDYVLPSFDGIAALEIAQQICPEVPFIMVSGMLGE 87 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 R + P E + + + L +I Sbjct: 88 ERAIEALKQGATDYVLK---QRLERLVPSVKRALRESQERQERLRVEEALRQTDDLLKAI 144 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 ++A+ I +N E +++ N A +++G+ ++++ + + N + L Sbjct: 145 VDASPVAIITLNLEKKVITWNIAAERIYGWQSQEVIDQ-LLPLIPPEEDEQFNRLFQQAL 203 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573 R K L+ + I + L + +T DI+ K+ + + + Sbjct: 204 QNYTRT--NYEFQHRGKNNDLIEISISLAPLHNAEGNVCGVVMTAVDITTRKRIEAERFN 261 Query: 574 AKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + + + K +FLA +SHE+RTPL +I+G+ +I+ + + Sbjct: 262 LLQREQSARAEAEAANRIKDEFLAVLSHELRTPLNSILGWITLIQRGKLNQTTLEQA--- 318 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+R+ ++ ++ DLLDIS+I G++NL+ V+L E + + V+ A K I I Sbjct: 319 LEVIERNASIQTQLIEDLLDISRISRGQLNLNINSVNLVELIQTTVDTVRPAAEAKSIAI 378 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + I I D ++Q+ N+ SNAI FTP G + I + ++V D+G+ Sbjct: 379 ELILDHRINIISGDGNRLQQVFWNLFSNAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGI 438 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805 G+ L + F Q S G GLGL +++ +V+ + G + S KG++ Sbjct: 439 GIEPNFLPYVFEYFRQADASTTRSQGGLGLGLAISRHLVELHGGTIDVESEGKGKGSVFI 498 Query: 806 IIFPLYDTSHPHDCI 820 ++ P+ D I Sbjct: 499 VMLPIRPIQFDQDQI 513 Score = 46.9 bits (110), Expect = 0.016, Method: Composition-based stats. Identities = 15/190 (7%), Positives = 46/190 (24%), Gaps = 17/190 (8%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----HPSLSAYFDEGENLTPETV 326 +E T L+ L + + ++L V Sbjct: 86 GEERAIEALKQGATDYVLKQRLERLVPSVKRALRESQERQERLRVEEALRQTDDLLKAIV 145 Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D P+ + + N + + ++S + I+ P + + Sbjct: 146 DASPVAIITLNLEKKVITWNIAAERIYGWQSQEVIDQLL--------PLIPPEEDEQFNR 197 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L++ + + + + ++ N + + + Sbjct: 198 LFQQALQNYTRTNYEFQHRGKNNDLIEISISLAPLHNAEGNVCGVVMTAVDITTRKRIEA 257 Query: 446 K----MEIEV 451 + ++ E Sbjct: 258 ERFNLLQREQ 267 >gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1078 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 122/531 (22%), Positives = 206/531 (38%), Gaps = 35/531 (6%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 A E E+ V+ + S G + AN LT D + Sbjct: 427 TERQWAEAALGESESRYRALVELAVDGILLGSHEGVITGANECMCDLTGLTREDMLG--M 484 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 +S L P+ + + L D I+ + L E ++ Sbjct: 485 HISALPFKPESLEREPFRFEQLEHGD----IVQKERVLIRPDGTEIL------VEMRSKM 534 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-----IIN-REGIILSTN 478 + I + R + + +L + + G+ ++ RE + Sbjct: 535 MPDGTYQSIFRDVTARRKAEAALRESEERLRMLSDNLPGGLVYQIEVGLDGRERRFTYIS 594 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 V L G V+D+L ++ + E +L K+ Sbjct: 595 GGVESLHGLSVQDVLDDASVLYAQLPEKDGEQLAEREAEALSAMSLFHAEARFRLASGKV 654 Query: 539 LS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L +++ + DI+E K+ + L AK+ AE + K++FLA +SHEI Sbjct: 655 RWSYLASAPRRIGDRVVWDGVEIDITELKKTEAALLEAKETAETANRVKTEFLANMSHEI 714 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G ++++ P +Y S + ++ D+LDIS+IE+GKM+ Sbjct: 715 RTPLNGILGMMQLLRQTSLEP----EQEKYVELSITSAARLTRLLADILDISRIEAGKMS 770 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715 L P S E V + L + A EK + +R + +P +L D V+QI N++ NA Sbjct: 771 LFNAPFSAAELVDSVVELFAVPAREKGLRLRCAIHPGLPPLLVGDEARVRQILFNLVGNA 830 Query: 716 IHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + +T G I + + + +RV DTGVG+ + L +PF Q+ S Sbjct: 831 LKYTEQG-DITLELFARDADLCRSECMCIRVVDTGVGIPAHMLSGVFEPFRQVEGSHTRS 889 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH---PHD 818 EG GLGL + + +V+ G+ + S P GT + + PL S P D Sbjct: 890 YEGAGLGLAIVQRLVELMQGEISVQSEPGAGTAVLVSLPLRAASEYCIPQD 940 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 40/378 (10%), Positives = 100/378 (26%), Gaps = 13/378 (3%) Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + + YD + + + K + + Sbjct: 195 ALAASRPVYDSHGTALGVVSVDVFLSQLTRFLQQLRIGSTGKAFILDRTGVLVAGSGTEP 254 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 F ++ ++ + +L E + Sbjct: 255 LFVPARGGNPGRRILGTQSRDLLVHAASQALSSRFGNLEKISAEHHFEFSGLGQHLLVTV 314 Query: 334 FVYSH----GNLFYA----NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 L + + V I + G L+ L L +KP+ Sbjct: 315 SPLRDPLGIDWLIVVAVPESDFMARIGDNARVTAIIMLGVLALSLLVGTLLARRIVKPIS 374 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 +A + L I + + G++ E + + + Sbjct: 375 GLEEAAGRLAGDSSLEMIGETSRFVEVQSLTRSFNRMARQLSQTMQGMKRELTERQWAEA 434 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQN 504 + + +++E DGI + + EG+I N + L G ED+L + + Sbjct: 435 ALGESESRYRALVELAVDGILLGSHEGVITGANECMCDLTGLTREDMLGMHISALPFKPE 494 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + ++ D ++K + + + + + K+ Y D++ Sbjct: 495 SLEREPFRFEQLEHGD---IVQKERVLIRPDGTEILVEMR-SKMMPDGTYQSIFRDVTAR 550 Query: 565 KQEKNKLSHAKKIAEKES 582 ++ + L +++ S Sbjct: 551 RKAEAALRESEERLRMLS 568 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 62/252 (24%), Gaps = 24/252 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + +E + G M+GM + + ++ + L+ + + L Sbjct: 460 EGVITGANECMCDLTGLTREDMLGMHISALPFKPESLEREPFRFEQLEHGDIVQKERVLI 519 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +GT + V + +P + + I A + +++ L + Sbjct: 520 RPDGTEILVEMRSKMMP----DGTYQ-----SIFRDVTARRKAEAALRESEERLRMLSDN 570 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------------EYYAHKDDVLKTEK 258 G + E ++ + L+ KD E+ Sbjct: 571 LPGGLVYQIEVGLDGRERRFTYISGGVESLHGLSVQDVLDDASVLYAQLPEKDGEQLAER 630 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 S S + F + + + + + Sbjct: 631 EAEALSAMSLFHAEARFRLASGKVRWSYLASAP--RRIGDRVVWDGVEIDITELKKTEAA 688 Query: 319 ENLTPETVDKCP 330 ET + Sbjct: 689 LLEAKETAETAN 700 Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats. Identities = 30/289 (10%), Positives = 61/289 (21%), Gaps = 19/289 (6%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNI-----DAHGYLKEISEELPKT 105 QS F D + +SE + I IS + Sbjct: 541 QSIFRDVTARRKAEAALRESEERLRMLSDNLPGGLVYQIEVGLDGRERRFTYISGGVESL 600 Query: 106 IGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 G ++ + + + L + ++ + G Sbjct: 601 HGLSVQDVLDDASVLYAQLPEKDGEQLAEREAEALSAMSLFHAEARFRLASG--KVRWSY 658 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 LA+ P +R G+ A + + +K + + Sbjct: 659 LASAPRRIGDRVVWD----GVEIDITELKKTEAALLEAKETAETANRVKTEFLANMSHEI 714 Query: 223 D-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277 I ++ + E L +L + F+ Sbjct: 715 RTPLNGILGMMQLLRQTSLEPEQEKYVELSITSAARLTRLLADILDISRIEAGKMSLFNA 774 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 ++E L HP L E + + Sbjct: 775 PFSAAELVDSVVELFAVPAREKGLRLRCAIHPGLPPLLVGDEARVRQIL 823 >gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 453 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 174/386 (45%), Gaps = 22/386 (5%) Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ + ++ +L +IL+ +G+ + IL N + Sbjct: 84 DEIGQLSSAINIMSDKLQETIDELYDRNAKLEAILKGLINGVIAFDENEKILLINDSARA 143 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + ++ K + + L +I+ K K+ S I Sbjct: 144 ILDIKESSVVGKHILDVVRNT---KFHDILEKIIKNKGYNIDNLEINTFNKYLKIYSSPI 200 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + + + ++DI+E ++ + +SDF+A VSHE+RTPLT+I Sbjct: 201 VHQVTHKKLGFVVIINDITEVRKLE--------------KIRSDFVANVSHELRTPLTSI 246 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 GF E ++ + ++ I+ + ++ND+L +S+IE+ K E ++ Sbjct: 247 RGFIETLREGAIDNV--EERDKFLEIIEFEAERLTRLINDILTLSEIENLKEGFVKEDIA 304 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 +D+ V+E +++ AN+K I + + I ++Q+ +N++ N I +TP GG Sbjct: 305 IDDEVNEIFYIMEKTANDKSIKLIKDLNCSGVVIKTSKDRLRQMIINLVDNGIKYTPEGG 364 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++T +V++ V+D+G+G++ + + + F ++ + + GTGLGL + K Sbjct: 365 YVKVTT-IDRKGDVVIEVKDSGIGISKENIPRLFERFYRVDKGRSRKLGGTGLGLAIVKH 423 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V++ G + S KGT I+ P Sbjct: 424 IVESMKGSISVESEVGKGTKFTIVLP 449 >gi|330974060|gb|EGH74126.1| signal transduction histidine kinase with CheB and CheR activity [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1377 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 209/584 (35%), Gaps = 25/584 (4%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 +S+L L+ S E E+ IN + + T + + Sbjct: 669 QMLSNLDRELQRTKLQLQDVIEQAEVSSEELKASNEEMQAINEELRSASEELETSKEELQ 728 Query: 298 ESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKY 354 E L NH D+ + + I FV + + P + Sbjct: 729 SINEELLTVNHELKIKVEETDQVNDYLSNLISSTDIATIFVDRELRIKWFTPRATDIFNM 788 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 ++VD ++ L ++ D+ L +R +A + Sbjct: 789 RAVDAGRPLMDITHRLKYDEMIDDAMSVFGSLKSIEREIASA------------SGGWYI 836 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGI 473 + + + R ++++ + ++ + E T D I +++ +G+ Sbjct: 837 VRVLPFRSNVDQIGGIVLTFVDITSRREAEQELRLSEERMRLVTEGTHDYAIVVLDEKGL 896 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 I N+ FGY E+ + F + + S + Sbjct: 897 ITDWNKGAWHTFGYSREEAEGRHFRFIFSAEDRRAGVPEME-LASARAHGRCDDERWHVR 955 Query: 534 KEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K+ + + D++ + + + + + K F A Sbjct: 956 KDGSRFYCSGEVTALASKGFQGFVKIARDMTNHIKLQEEQQQSLAESLNSIQQKDQFFAV 1015 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE++ PL I ++V + +P + I + I++DL+D++++ Sbjct: 1016 MSHELKHPLNLIQLNAQV-ARRLPVAKKDPTLQKAIGTITDAVASQARIIDDLMDVARVR 1074 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L + + + V+E +V + E I I AD ++QI N+ Sbjct: 1075 NGKLQLQCKTLDVVALVNEIQQVV--FKAEPGCKILFETPEQSLFIHADQTRIEQIIWNL 1132 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IR 770 LSNAI FTP G + + TT V + V DTG G+ +LE+ + FGQ + R Sbjct: 1133 LSNAIKFTPVEGTVSVVTTQQEQ-WVRIEVIDTGPGIEKDQLERIFEMFGQADHQPSGKR 1191 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813 G G+GL L + +V+++ G+ + +S KG+ + PL D Sbjct: 1192 RGGLGIGLALVQQLVESHHGRIHAYSEGAGKGSRFTVELPLADV 1235 Score = 38.5 bits (88), Expect = 5.2, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 11/125 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + + ++ T G + G + +L + Sbjct: 891 LDEKGLITDWNKGAWHTFGYSREEAEGRHFRFIFSAEDRRAGVPEMELASARAHGRCDDE 950 Query: 149 LWPI--EGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNR-VDNDPRALGKRLDKKF 204 W + +G+ Y ++ AL GF+GF I + L + Sbjct: 951 RWHVRKDGSRFYCSGEVTALASK-------GFQGFVKIARDMTNHIKLQEEQQQSLAESL 1003 Query: 205 SHLHE 209 + + + Sbjct: 1004 NSIQQ 1008 >gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii GP-6] Length = 1103 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 108/395 (27%), Positives = 182/395 (46%), Gaps = 27/395 (6%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR- 494 E + + M ++ I+ D +IN+EG++++ NRA+ + EDIL Sbjct: 425 EVQERIQAEAAMRDSERRMADIINFLPDATFVINKEGVVIAWNRAIEMMTQVKAEDILGK 484 Query: 495 -------------KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +P + L N + E+ + + + KL L Sbjct: 485 GEYEYSLPFYKKRRPILIDLVTNQDLDVKGCYEELKWHEDGSLAGVSFISNL-NGKLTYL 543 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + L S ++ DI++ K + L ++K+ AE + KS+FLA +SHEIR Sbjct: 544 QGSAAVLYDSEGNIYGAIESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIR 603 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ A++G + ++ P EY I GN +L I+N++LD SKIE KM L Sbjct: 604 TPMNAVVGMTGLLLETDLKP----EQREYLETIRTGGNTLLAIINNILDYSKIEGEKMEL 659 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 P L + E++ +V A EK + I +++PR IL D ++QI +N+L NA Sbjct: 660 EILPFDLLGCIEESMDMVAANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNAT 719 Query: 717 HFTPSGGQI-IISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G + +STT + + RV DTG+G++ L + + F Q+ +S G Sbjct: 720 KFTEKGEIVLSLSTTPLDDGRIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGG 779 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 TGLGL +++ +V+ G+ ++ S G+ Sbjct: 780 TGLGLAISRRLVEMMEGRIWVESEKGVGSTFHFTI 814 Score = 41.6 bits (96), Expect = 0.59, Method: Composition-based stats. Identities = 19/208 (9%), Positives = 48/208 (23%), Gaps = 27/208 (12%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 + E + ++ C + ++ F I+ G Sbjct: 414 QLEDTNRDLNCEVQERIQAEAAMRDSERRMADIINFLPDATFV-----------INKEGV 462 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---KTTLWP 151 + + + A ++G + S + + DL+ Q+ + W Sbjct: 463 VIAWNRAIEMMTQVKAEDILGKGEYEYSLPFYKKRRPILIDLVTNQDLDVKGCYEELKWH 522 Query: 152 IEGTNLYVP-----------IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +G+ V + +A +Y G + K Sbjct: 523 EDGSLAGVSFISNLNGKLTYLQGSAAVLYDSEGNIYGA--IESIRDITDQKMVEEDLKNS 580 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 ++ K + + Sbjct: 581 KERAELATRSKSNFLANMSHEIRTPMNA 608 >gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1022 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 166/370 (44%), Gaps = 16/370 (4%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + + + +ILE+ +G ++ G L N + K+ GY ++ K + L + T Sbjct: 210 LRLSEEKHRTILESIEEGYYEVDLAGSFLFFNPGLCKILGYTKAELSGKNYREILTEKTA 269 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDIS 562 + +++ + + K+ ++ I + + + D++ Sbjct: 270 QIAYEKFSDVYRTGEPSKVADWIMIK-KDGSECAVEASISLIKDLNDKPAGFRGVARDVT 328 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + + +++AE S KSDFLAR+SHEIRTPL A++G +E+ N++ N Sbjct: 329 ENLRL-LEADQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEKM----NQN 383 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I N ++ +VN +LD SKIE+ KM L P L + + + L A +K Sbjct: 384 LKKIIETITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKK 443 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737 + IP ++ D ++Q+ N++ NAI FT G ++ + + + + Sbjct: 444 GLEFILHINPEIPVQVKGDPGRIRQVLTNLIGNAIKFTSEG-EVFVKAELETRTDEKAII 502 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++DTG+G+ + + F Q +S + GTGLG ++K +V+ G+ + S Sbjct: 503 KFHIQDTGIGIPEEKRGLIFEAFTQADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESR 562 Query: 798 PAKGTLIEII 807 G++ Sbjct: 563 EGCGSIFWFT 572 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 7/128 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYG 145 + +D G + L K +G ++ G ++ D+ + Sbjct: 229 YEVDLAGSFLFFNPGLCKILGYTKAELSGKNYREILTEKTAQIAYEKFSDVYRTGEPSKV 288 Query: 146 KT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLDKK 203 + +G+ ++ + I N + +GFRG + A KR + Sbjct: 289 ADWIMIKKDGS--ECAVEASISLIKDLNDKPAGFRG--VARDVTENLRLLEADQKRQLAE 344 Query: 204 FSHLHEIK 211 + L + Sbjct: 345 AASLAKSD 352 >gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134] gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134] Length = 1808 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 107/678 (15%), Positives = 228/678 (33%), Gaps = 62/678 (9%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKN 238 +V + ++ +++ + + + + + + Sbjct: 862 LVTDVTSHKTAQRRLRQSEEQLQDFLDNASILIQSVDLEGTVHYVNKYWCKKLGYSKAEA 921 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NS 296 ++L + ++ L +E + T + + ++ Sbjct: 922 LRTNLIDLVVPEEQEDYRALLQHLKTEGGAQQISTRLITKDGKTLMLEGSINIRKDGKPL 981 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK 355 E L ++ PI +Y G N + + Sbjct: 982 LTRSFLQDVTERNQAERAILEQNRLFEAFLENSPIGIQIYDKQGFSLQMNDAQKRILGLD 1041 Query: 356 SVDDIEIAGGLSTLLDAPKLS----DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 S + + L + + L R + + IQ + Sbjct: 1042 SQETPKFNILQDERSQEAGLDFFYKAAYGGESIFLPRLETELVIKEEEGKAIQKE----V 1097 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-R 470 + I F N + E + + ++++ + SI +A + + + + Sbjct: 1098 CLNLIIFPIKNDYNEVEGVVTFTQDVSEQFTIEQELNESRYFIKSIADAIPNDVYVYDLE 1157 Query: 471 EGIILSTNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDL------ 521 + + TN K G+ ++++ R + + N + E+ Sbjct: 1158 QERYVYTNTQYFKHSGFTIKEVDRGGLERIWDMIHPNDLPEIKAIFEEVYKGGEDMYEMS 1217 Query: 522 --------------RQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLTMHDIS 562 Q+L+ L + K + + + + + +I+ Sbjct: 1218 YRLACNLNNKKGKTHQSLDPTQLHQEGQ-KYVWVYDRLVPFKINVEGRVTQILGVVQNIT 1276 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + K + +L AK+ AEK K FL+ +SHEIRTP+ A+IG + ++ + P Sbjct: 1277 DSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEEDHKP----E 1332 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +E + S +L ++ND+LD +KIE+GK++ +L E ++ A EK Sbjct: 1333 QLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAAEK 1392 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------- 733 I + ++P +L D + QI N+L NAI FT G +++ Sbjct: 1393 GIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDKGF-VVVKVQLQETLPDKQNI 1451 Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ V+D+G+G+ + + F Q + R GTGLGL + K +++ G Sbjct: 1452 PHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQGG 1511 Query: 791 KFYIFSTPAKGTLIEIIF 808 + + S KG+ Sbjct: 1512 EIGLHSELGKGSEFYFFL 1529 Score = 134 bits (336), Expect = 9e-29, Method: Composition-based stats. Identities = 59/499 (11%), Positives = 135/499 (27%), Gaps = 24/499 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLW 150 G+ IS + G +M+ ++ + + +LK + + Sbjct: 525 EGFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKSRALQILEYRFK 584 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G V ++ P+Y + +G K+ + + Sbjct: 585 HKNGEL--VWLETHLFPVYDDAGKLKHVQGN--TRNITERKQSEFTLKQTRDYLIEVLDH 640 Query: 211 KKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEE 266 V+ E+Y+ S + + +V T+Y + T + S Sbjct: 641 IPDPVFVKNERYEFISVNEAYCELVGKPREQVLLKTDYDIFASEDAHTLREKDSQVFSTG 700 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTP 323 ++ Q +N + +++ + + E Sbjct: 701 NTAEYQRVITNLNGEKRHILVKIDIFRDDKNQKVLVGVIRDITQQKTAEERLANNERSLK 760 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + F N F K + L + + Sbjct: 761 AILTSFNDIVFE------INQNLIFTNFWGDKDKLFFDDQDFLGKKVTKVMDDPMRSYFA 814 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L + ++Q ++ + T + ++ + + + + Sbjct: 815 SSLRHVLDNKTSKIIEYPSVQNGVKSWYSCTINYLPETSE--RQAGVSVLVTDVTSHKTA 872 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R++ QL L+ S I ++ EG + N+ K GY + LR + Sbjct: 873 QRRLRQSEEQLQDFLDNASILIQSVDLEGTVHYVNKYWCKKLGYSKAEALRTNLIDLVVP 932 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDI 561 L + + Q + + TK+ K L L I + D+ Sbjct: 933 EEQEDYRALLQHLKTEGGAQQISTRLI--TKDGKTLMLEGSINIRKDGKPLLTRSFLQDV 990 Query: 562 SEWKQEKNKLSHAKKIAEK 580 +E Q + + ++ E Sbjct: 991 TERNQAERAILEQNRLFEA 1009 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 52/481 (10%), Positives = 135/481 (28%), Gaps = 30/481 (6%) Query: 117 RLCDVSDILHIDPNNHIGD---LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 +L V + LK+ + + + EG+ ++ LA ++++ Sbjct: 169 QLKSVIHPDDLSQLIAYRQGLVSLKKGEIDFVEYRIKTKEGSYAWL---LAKDVVFTQEA 225 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-- 231 + G+ + + + + + ++ + Sbjct: 226 SGEVTQVLGLARDITEIKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNEAYCQ 285 Query: 232 PHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + + + L A +K + + E + + Sbjct: 286 FFNKTADDLINTPFLEMVPAENHASVKKRLKKIAQEKRPITQEYKVMVEDQTEDIWLRWT 345 Query: 289 FGTLQNNSKESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343 + + + E L + + E + + ++ PI F+ L + Sbjct: 346 DYPIFDEKGQLVEFQSVGLEITDRKRVEIELQEQKQMLESILNTLPIHVFIKDENSRLLF 405 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 N + L + K I + K++D +L + D I Sbjct: 406 VNQTMLDFLRKKPEQLIGK---TDAEIFPSKVADKFFDDDELLKKGDLPDNWEE----EI 458 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + G E + + ++ + I T+D Sbjct: 459 EVDNHR-HFFRTGKCLIPLPMQNTHYLLGYSFEITPLKETQLQLHESEAKYRLIANNTND 517 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I + EG + +V L GY +++ + ++ + + + ++L Q Sbjct: 518 LICLHTYEGFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKSRALQ 577 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE 579 L K +L+ L + + + + +I+E KQ + L + Sbjct: 578 IL--EYRFKHKNGELVWLETHLFPVYDDAGKLKHVQGNTRNITERKQSEFTLKQTRDYLI 635 Query: 580 K 580 + Sbjct: 636 E 636 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 55/522 (10%), Positives = 148/522 (28%), Gaps = 46/522 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D + L +++ + + ++IG ++ D +LLK+ + Sbjct: 398 DENSRLLFVNQTMLDFLRKKPEQLIGKTDAEIFPSKVADKFFDDDELLKKGDLPDNWEEE 457 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 ++ + +P+ + + + G + + + K+ + Sbjct: 458 IEVDNHRHFFRTGKCLIPL---PMQNTHYL-LGYSFEITPLKETQLQLHESEAKYRLIAN 513 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPLLTSE 265 + + L + + D + + Sbjct: 514 NTNDLICLHTYEGFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKS 573 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENL 321 + + F N + + + +++ + + + + + + + Sbjct: 574 RALQILEYRFKHKNGELVWLETHLFPVYDDAGKLKHVQGNTRNITERKQSEFTLKQTRDY 633 Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E +D P P FV + N ++ L + + + Sbjct: 634 LIEVLDHIPDPVFVKNERYEFISVNEAYCELVGKPREQVLLKTDY--DIFASEDAH---- 687 Query: 381 IKPVMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 L D + + N E + I + ++ + + G+ + Sbjct: 688 ----TLREKDSQVFSTGNTAEYQRVITNLNGEKRHILVKIDIFRDDKNQKVL--VGVIRD 741 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV-SKLFGYPVEDILRK 495 + + ++ L +IL + +D + IN+ ++ TN + +D L K Sbjct: 742 ITQQKTAEERLANNERSLKAILTSFNDIVFEINQN--LIFTNFWGDKDKLFFDDQDFLGK 799 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551 T ++ S L +L + +E ++ + I LP Sbjct: 800 KVTKVMDDPMRSYFASSLRHVLDNKTSKIIEYPSV---QNGVKSWYSCTINYLPETSERQ 856 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + S+ + D++ K ++ + DFL S Sbjct: 857 AGVSVLVTDVTSHKTA-------QRRLRQSEEQLQDFLDNAS 891 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 95/311 (30%), Gaps = 20/311 (6%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYSHGN-LFYANP 346 Q S E + L + ++ E L ++ + L + N Sbjct: 222 TQEASGEVTQVLGLARDITEIKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNE 281 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 ++ + D I +T ++N+A L + + + + + Sbjct: 282 AYCQFFNKTADDLI------NTPFLEMVPAENHASVKKRLKKIAQEKRPITQEYKVMVED 335 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + + ++ + + + E D + + +++ + L SIL + Sbjct: 336 QTEDIWLRWTDYPIFDEKGQLVEFQSVGLEITDRKRVEIELQEQKQMLESILNTLPIHVF 395 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I + +L N+ + E ++ K + DL E Sbjct: 396 IKDENSRLLFVNQTMLDFLRKKPEQLIGKTDAEIFPSKVADKFFDDDELLKKGDLPDNWE 455 Query: 527 KITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + + + +I + + +I+ K+ + +L S K Sbjct: 456 EEIEVDNHRHFFRTGKCLIPLPMQNTHYLLGYSFEITPLKETQLQLHE--------SEAK 507 Query: 586 SDFLARVSHEI 596 +A ++++ Sbjct: 508 YRLIANNTNDL 518 Score = 97.4 bits (241), Expect = 1e-17, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 82/264 (31%), Gaps = 10/264 (3%) Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + P +VY +L Y+N + + L +++ LS Sbjct: 125 LKGVLQTTPDLIYVYDLREESLVYSNRIYDNKFALDQAPFLP-LDQLKSVIHPDDLSQLI 183 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + ++ R+ T + + E G+ + + Sbjct: 184 AYRQGLVSLKKGEIDFVEYRIKT--KEGSYAWLLAKDVVFTQEASGEVTQVLGLARDITE 241 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + +K+ +++ + + + + N A + F +D++ PF Sbjct: 242 IKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNEAYCQFFNKTADDLINTPFLE 301 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + + + L +I T E + + + + LR + + Sbjct: 302 MVPAENHASVKKRLKKIAQEKRPITQEYKVMVED-QTEDIWLRWTDYPIFDEKGQLVEFQ 360 Query: 560 ----DISEWKQEKNKLSHAKKIAE 579 +I++ K+ + +L K++ E Sbjct: 361 SVGLEITDRKRVEIELQEQKQMLE 384 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 45/412 (10%), Positives = 98/412 (23%), Gaps = 50/412 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKT 147 +D G + +++ K +G + + L D+ + + LK T Sbjct: 897 VDLEGTVHYVNKYWCKKLGYSKAEALRTNLIDLVVPEEQEDYRALLQHLKTEGGAQQIST 956 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L +G L + + ++ + R F + N ++ F Sbjct: 957 RLITKDGKTLMLEGSINIR----KDGKPLLTRSF--LQDVTERNQAERAILEQNRLFEAF 1010 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + ++ R+ S T + D E + + Sbjct: 1011 LENSPIGIQIYDKQGFSLQMNDA--QKRILGLDSQETPKFNILQDERSQEAGLDFFYKAA 1068 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNS-----------------KESFEYLSHRNHPS 310 E + K++ +Q + Sbjct: 1069 YGGESIFLPRLETELVIKEEEGKAIQKEVCLNLIIFPIKNDYNEVEGVVTFTQDVSEQFT 1128 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + +E D P +VY Y N + + + + GGL Sbjct: 1129 IEQELNESRYFIKSIADAIPNDVYVYDLEQERYVYTNTQYFKHSGFTIKEV--DRGGLER 1186 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-------------------TIQWNREN 409 + D +D IK + + + Sbjct: 1187 IWDMIHPNDLPEIKAIFEEVYKGGEDMYEMSYRLACNLNNKKGKTHQSLDPTQLHQEGQK 1246 Query: 410 SLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + K N G+ D++ + ++ L+A Sbjct: 1247 YVWVYDRLVPFKINVEGRVTQILGVVQNITDSKNFEEELIQAKQDAEKALQA 1298 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 77/272 (28%), Gaps = 21/272 (7%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + G + + N Y + + + L L D + + + Sbjct: 2 IVTDAQGTILFFNKGAENKLGYTCSEVV------NKLNLTHFLLDFELLDLAENNLTQPS 55 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM--------PQNGIEPEDVDTRINK 444 A L + + + + + + + + K Sbjct: 56 PTTLFAILENKVVQASPCIEQLTVSTKDEKLWKCQLILNKEAHGNYVVMLHDMTQIKARK 115 Query: 445 RKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP-FTVFLE 502 + I L +L+ T D I + + RE ++ +NR F L + Sbjct: 116 DDLIIHHNFLKGVLQTTPDLIYVYDLREESLVYSNRIYDNKFALDQAPFLPLDQLKSVIH 175 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-----IIKKLPFSSCYSLT 557 + S + Y ++SL + TKE L + + Sbjct: 176 PDDLSQLIAYRQGLVSLKKGEIDFVEYRIKTKEGSYAWLLAKDVVFTQEASGEVTQVLGL 235 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 DI+E K+ KL ++ + + + + L Sbjct: 236 ARDITEIKEANQKLLQSEALYRAVINTQQEIL 267 Score = 41.2 bits (95), Expect = 0.74, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 17/125 (13%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRK--------------PFTVFLEQNTPSVMN 510 + + + +G IL N+ GY +++ K L Q +P+ + Sbjct: 1 MIVTDAQGTILFFNKGAENKLGYTCSEVVNKLNLTHFLLDFELLDLAENNLTQPSPTTLF 60 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 L + + STK+EKL ++I+ K + Y + +HD+++ K K+ Sbjct: 61 AILENKVVQASPCIEQ--LTVSTKDEKLWKCQLILNKEAHGN-YVVMLHDMTQIKARKDD 117 Query: 571 LSHAK 575 L Sbjct: 118 LIIHH 122 >gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica KT99] Length = 1176 Score = 348 bits (892), Expect = 3e-93, Method: Composition-based stats. Identities = 119/551 (21%), Positives = 211/551 (38%), Gaps = 23/551 (4%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN--LTPETV 326 L E + L T Q + ++ + + D + Sbjct: 189 LSELKRASKRILQGETGVQIPVNSHDEIGQTTQAFNRMIEKIEKNAQDLESANIRLSTIL 248 Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + F + G + NP+ L Y + D I + + Sbjct: 249 EAAVDGFIIIDTQGIIVQVNPAVGHLFGYDNNDLIGHNVSI---FMPSHERHMQNDFLMR 305 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 S R + R Q + ++ G+ + D + + Sbjct: 306 FINSKRGGLQGKGRELVAQHKSGKLFPIDLS--VSKMLIDGDVMLLGLVKDLSDIKRKEA 363 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQN 504 + + L + LEA+ D + I+ G I N A S+LFG+ E L + F Sbjct: 364 EAKRTESILLATLEASQDALITIDITGRIQEFNEAASQLFGHSREQALGEIFEELIFVDI 423 Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHD 560 L ++K + + + + I +L + +HD Sbjct: 424 ERKAFKEELEVFRKTGCGPAIKKSVELMSIRADGTHFPVEMKMIPVQLGDEILLTAFLHD 483 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 +SE Q + +L AK+ AE S KS FLA +SHEIR+PL A++G E++ + + N Sbjct: 484 VSERMQYETELKQAKEQAELGSKAKSRFLATMSHEIRSPLNAVLGGVELMLDSKL----N 539 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 YA+ +G +L +ND+LD SKIE+G+M L S + V++ + ++ AN Sbjct: 540 KDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLKNMSFSPAKMVAQVMQILAPKAN 599 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 EK + + T N+P + D + ++Q+ N++ NAI F+ SGG I + + Sbjct: 600 EKGVNLATFINRNVPALVKGDAQRLRQVLHNLVDNAIKFS-SGGCISVEMWIPDGHHQEV 658 Query: 740 R----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D G+G++ +K + F Q+ + GTGLGL + ++ G+ + Sbjct: 659 QLHCAVTDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTGLGLAICSELITMMGGEIELS 718 Query: 796 STPAKGTLIEI 806 S G+ Sbjct: 719 SRLGHGSCFRF 729 >gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator [Blastopirellula marina DSM 3645] Length = 845 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 113/503 (22%), Positives = 214/503 (42%), Gaps = 24/503 (4%) Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ I + + N + A+ L + ++ D++ LL Sbjct: 190 LQTANERLDCALEAGGIGVWQWRDENDQFEADGRALQMHGIQATDNVSTLAEFLDLLHED 249 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + T + + R I + ++ + G+ Sbjct: 250 DREELRTATARCVSH--GTNYSVNYR---IPRANGTVRYIQSHGKVLSSDDGKTRKLVGV 304 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + ++ +L + +T + I N+ G N A ++L GY E+ + Sbjct: 305 CIDQTELTEYHAAVK----KLSLVASSTRHSVVITNQAGETEWVNNAFTQLTGYSAEEAI 360 Query: 494 RKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + L+ T + L ++ + L K+ + + I+ + Sbjct: 361 GRKPGSLLQGPETNQETIEIVRRALQ--KQEQVSAELLNYAKDGHSYWIALEIEPVFDQE 418 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + T DI++ + +L A + AE + KS FLA +SHEIRTPL I+GF++ Sbjct: 419 GRLSNFIATQIDITDQVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTD 478 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + EY + SG +L ++N++LD+SKIESG++ + P S + + Sbjct: 479 LLLYDIESTEAD--RREYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQIL 536 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 ++ IS+++ EK+I IR + ++IP ++L D +KQ+ LNI+ NAI FT +G ++ I Sbjct: 537 TDVISVLRPKFEEKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQTG-EVRI 595 Query: 728 STTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + +I V DTG+G+ +LE +PF Q +S R GTGLGL +++ + Sbjct: 596 VARLEAEATRSRLIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNL 655 Query: 785 VDANMGKFYIFSTPAKGTLIEII 807 + G + S G+ I Sbjct: 656 AELLGGSLHAESVEGLGSKFTIT 678 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 15/168 (8%), Positives = 47/168 (27%), Gaps = 6/168 (3%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGT 155 ++ + G A + IG + + + + L++Q + + +G Sbjct: 344 VNNAFTQLTGYSAEEAIGRKPGSLLQGPETNQETIEIVRRALQKQEQVSAELLNYAKDGH 403 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + ++ +++ P++ + S F I + + K Sbjct: 404 SYWIALEI--EPVFDQEGRLSNFIATQI--DITDQVRRTEELIEAMETAESANHAKSQFL 459 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + S + +++ LL Sbjct: 460 ANMSHEIRTPLNGIMGFTDLLLYDIESTEADRREYLETVRSSGEHLLA 507 >gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106] Length = 1710 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 116/594 (19%), Positives = 224/594 (37%), Gaps = 39/594 (6%) Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-----FGTLQNNSKES 299 E ++++ + T+ E L + T + + Sbjct: 899 EVIPELLEIVEPIYRQVQTTGEPVLNIEIQGTTAAQPDIKRDWITSYYPVELSSDKIGFG 958 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKS 356 + + E ++ P F Y +P+ L Y+ Sbjct: 959 VVVTEVTQLKQVQEALRQSEARLQYLLNNTPAVIFSCKPQGDYAATYISPNIRNLLGYEP 1018 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + + L ++ + + + ++ ++ Sbjct: 1019 EEFLNNSD-----FWVTHLHPDDRARILTGLPKGLNEDGFYTHEYRLRTTENTYRWVSAT 1073 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 +Q + G + + + + + L + + E Sbjct: 1074 LQMIKDQQNTPLECVGCLMDITERVVAEEAWRWSEERFNLALSNSPITFTTQDCELRYTW 1133 Query: 477 T-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A G+ E+I+ T L + + ++ +R E + + Sbjct: 1134 VYNPA----PGFTFEEIVGNLETELLSADEAERILAIKQPVIETGIRNCQEY-FIARDGQ 1188 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK------NKLSHAKKIAEKESSHKSD 587 + L + + ++ + + DI+E KQ + +L K+ AE + KS Sbjct: 1189 MRYYELSVEPLRDSDNNIIGIATVVIDITERKQAELERQRARELQREKEAAESANLAKSR 1248 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTPL AI+GF++++ Q P + EY N I RSG +L ++ND+L + Sbjct: 1249 FLANMSHELRTPLNAILGFTQLLLRQ---PQFSGEPSEYLNIIHRSGKHLLGLINDILTL 1305 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SK+E+G++ L +P L + ++ L A KR+ + N+PR ++ D + Q Sbjct: 1306 SKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAANKRLQLEIKADANVPRGLIGDEDKLHQ 1365 Query: 707 IALNILSNAIHFTPSGGQ-IIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKP 759 + +N+LSNAI FT G + + + E + VRDTG G+ ELEK +P Sbjct: 1366 VLINLLSNAIKFTSFGEVCLTVRSQPVPAEMSSNSCYLQFEVRDTGAGINFDELEKIFEP 1425 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 F Q ++++ + TGLGL +++ V+ GK + S G++ + PL Sbjct: 1426 FIQTEAGEKVK-QSTGLGLAISREFVELMGGKITVESQLKHGSVFQFTIPLERV 1478 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 35/394 (8%), Positives = 89/394 (22%), Gaps = 56/394 (14%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D + +++ L G + IG + +V L + Sbjct: 869 DENWRYLRMNKILADINGKSVEEHIGKQPQEVIPELLEIVEPIYRQVQTTGEPVLNIEIQ 928 Query: 150 --------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRL 200 + Y P++L+ S GFG +V + ++ Sbjct: 929 GTTAAQPDIKRDWITSYYPVELS-----------SDKIGFGVVVTEVTQLKQVQEALRQS 977 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLTE----YYAHKDD 252 + + +L K + D + P + + + ++ + D Sbjct: 978 EARLQYLLNNTPAVIFSCKPQGDYAATYISPNIRNLLGYEPEEFLNNSDFWVTHLHPDDR 1037 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 P +E+ + T +++ E + + Sbjct: 1038 ARILTGLPKGLNEDGFYTHEYRLRTTENTYRWVSATLQMIKDQQNTPLECVGCLMDITER 1097 Query: 313 AYFDEGENLTPE----TVDKCPIPFFVYSHG-NLFYA-NPS----FLLLTKYKSVDDIEI 362 +E + E + PI F + NP+ F + + + Sbjct: 1098 VVAEEAWRWSEERFNLALSNSPITFTTQDCELRYTWVYNPAPGFTFEEIVGNLETELLSA 1157 Query: 363 AGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L + P + D Sbjct: 1158 DEAERILAIKQPVIETGIRNCQEYFIARDGQMRYYE-----------------LSVEPLR 1200 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + + + + + + + + Sbjct: 1201 DSDNNIIGIATVVIDITERKQAELERQRARELQR 1234 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 34/343 (9%), Positives = 98/343 (28%), Gaps = 27/343 (7%) Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E+ +E+ N T + + S E L N + + + Sbjct: 666 EDELQQARENLQATNEELETTNEEQQAINEELIASNEELQSTNQELYTINSEYQNQIQKL 725 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAI 381 + + S L + K+ + + L + + Sbjct: 726 IELSNDVNNLLQSTDIGVIFLDKSLKIRKFTPAVVVAINLNEVDIDRPLQHISYNFDCPH 785 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 +L + + + + + +T+ Sbjct: 786 FYSLLQQVLTHEQPIEQEVKILTTGD----TLLMRIHPYRQENQSCEGLVLSFVNISETK 841 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++E + ++L +I G+ + + L N+ ++ + G VE+ + K + Sbjct: 842 EFQNEIERQNIELENIYANIPVGLCLQDENWRYLRMNKILADINGKSVEEHIGKQPQEVI 901 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSCYSL 556 ++ ++ + L G+T + ++ ++ + + Sbjct: 902 -PELLEIVEPIYRQVQTTGEP-VLNIEIQGTTAAQPDIKRDWITSYYPVELSSDKIGFGV 959 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + ++++ KQ + L ++S + +L TP Sbjct: 960 VVTEVTQLKQVQEAL--------RQSEARLQYLLN-----NTP 989 Score = 45.8 bits (107), Expect = 0.029, Method: Composition-based stats. Identities = 17/179 (9%), Positives = 45/179 (25%), Gaps = 10/179 (5%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVSDILHID 128 SE F + FT D + + G +++G ++ + Sbjct: 1107 SEERFNLALSNSPITFTTQ-DCELRYTWVYNPA----PGFTFEEIVGNLETELLSADEAE 1161 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 I + + +G +L+ P+ + G I Sbjct: 1162 RILAIKQPVIETGIRNCQEYFIARDG--QMRYYELSVEPLRDSDNNIIGIATVVI--DIT 1217 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 +R + + + + + ++ + P + + L + Sbjct: 1218 ERKQAELERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQPQ 1276 >gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella violacea DSS12] Length = 1214 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 113/504 (22%), Positives = 200/504 (39%), Gaps = 21/504 (4%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + ++ F + G + NP+ L Y + D I + Sbjct: 258 ELESANIRLSTILEAAVDGFIIIDTQGLIVQVNPAVGQLFGYDNNDLIGHNVSI---FMP 314 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + S R + R Q + ++ G Sbjct: 315 SHERHMQHDFLMRFINSKRGVLQGRGRELVAQHKNGKLFPIDLS--VSKMLIDGDIMLLG 372 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + D + + + + L + LEA+ D + I+ G I N A S LFG+ E Sbjct: 373 LVKDLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASHLFGHSREQA 432 Query: 493 LRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI--IIKK 547 L + L ++K + + + + I + Sbjct: 433 LGEILEDLIFVDIEKKAFKEGLETFRKTGCGPAIKKSVELMSIRADGTNFPVEMKMIPVQ 492 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 L + +HD+SE Q + +L AKK AE S KS FLA +SHEIR+PL A++G Sbjct: 493 LGDEILLTAFLHDVSERMQYETELKQAKKQAELGSKAKSRFLATMSHEIRSPLNAVLGGV 552 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ + + N YA+ +G +L +ND+LD SKIE+G+M L S + Sbjct: 553 ELMLDSKL----NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLENMSFSPAKM 608 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726 V++ + ++ ANEK + + T N+P + D + ++Q+ N++ NAI F+ SGG + Sbjct: 609 VAQVMQILAPKANEKGVNLATFINRNVPELVKGDAQRLRQVLHNLVDNAIKFS-SGGCVS 667 Query: 727 ISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + ++ V D G+G++ +K K F Q+ + +GTGLGL + Sbjct: 668 VEMWIPDSHHQEVQLHCAVTDEGIGISLPAQKKLFKEFSQVHDQHNTNYKGTGLGLAICS 727 Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806 ++ G+ + S G+ Sbjct: 728 ELIIMMGGEIELSSRLGHGSCFRF 751 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 18/187 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + A E++ T++ + G + N + L + + Sbjct: 376 DLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASHLFGHSREQALGE 435 Query: 363 ---------------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 GL T +M R+D T ++ +Q Sbjct: 436 ILEDLIFVDIEKKAFKEGLETFRKTGCGPAIKKSVELMSIRADGTNFPVEMKMIPVQLGD 495 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-A 466 E L + Q+ + Q + E + ++ R + ++ S L A G+ Sbjct: 496 EILLTAFLHDVSERMQYETELKQAKKQAE-LGSKAKSRFLATMSHEIRSPLNAVLGGVEL 554 Query: 467 IINREGI 473 +++ + Sbjct: 555 MLDSKLN 561 Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 42/154 (27%), Gaps = 17/154 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--------DILHIDPNNHIGDLLKRQ 140 ID G + +++ + + G +IG + + N +L+ + Sbjct: 280 IDTQGLIVQVNPAVGQLFGYDNNDLIGHNVSIFMPSHERHMQHDFLMRFINSKRGVLQGR 339 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + G + + ++ + I + + G+V A KR Sbjct: 340 G---RELVAQHKNGKLFPIDLSVSKMLI---DGDIM---LLGLVKDLSDIKRKEAEAKRT 390 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 + E + I HL Sbjct: 391 ESILLATLEASQDALITIDITGRIQEFNEAASHL 424 >gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4] Length = 527 Score = 347 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 173/387 (44%), Gaps = 26/387 (6%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ I ++ ++ ++++ +L +++E G+ +I+ G ++ N+ Sbjct: 152 DETSMLSTSINILARNLQEMVSAQELQQ--DRLLTLIENMGSGLLLIDPRGFVVLMNKTF 209 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +LF + L+K + ++ + + + +++ L E K + Sbjct: 210 KELFEVDPSNYLKKRYHEAIQHEDIIKVVEEVFMTEE----KVRKQLLLPLHLERKHFEV 265 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 L HDI+E K+ + + DF+A VSHE++TP Sbjct: 266 YGAPIIGISDEWKGILLVFHDITELKKLE--------------QMRKDFVANVSHELKTP 311 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 +T+I GFSE + + Y + N + + + ++ DLLD+SK+E L Sbjct: 312 ITSIKGFSETLLDGALEDRDTLEY--FLNIMLTESDRLQSLIQDLLDLSKLEQHGFKLDV 369 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 L + E + +++ A EK I ++ + + D+ KQ+ +N+++NAI +T Sbjct: 370 STFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPEL-TLEGDMNRFKQVFINLINNAISYT 428 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 GG + + +E+ ++V+D GVG+ EL + + F +I ++ GTGLGL Sbjct: 429 GPGGHVKVFVK-EERDEITIKVQDNGVGIAASELPRIFERFYRIDKARSRNSGGTGLGLA 487 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI 806 + K +V+A+ G+ + S+ GT + Sbjct: 488 IVKHIVEAHHGEIDVESSEGVGTTFIV 514 >gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum gilvum SL003B-26A1] gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum gilvum SL003B-26A1] Length = 807 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 117/685 (17%), Positives = 237/685 (34%), Gaps = 40/685 (5%) Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--- 205 G V + +G + + +A + + S Sbjct: 137 RLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRDLTGERQAQAELAARNARLSGEL 196 Query: 206 ----HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L E + + + S ++ D E Sbjct: 197 HMLHALLEAMPAPAWQRDAEGRVTWANSAYACAVDVADAATAVRDNVDFLDAAGREAMSR 256 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 ++ + + + N + + L E Sbjct: 257 DRDDDGCFRARMPIVAAGERRV---FEVTDVSANVGGAALAIDISELDRLKKELRRTEEF 313 Query: 322 TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDN 378 T+D+ +Y L + N +F L + +D G + L A + Sbjct: 314 HGSTLDQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGRPEDGAVLDALRAARKLPE 373 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A V + + + AR +L + P G Sbjct: 374 QADYRVWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHP-----------QGGVTYIY 422 Query: 439 DTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + +E L + L+ S+ +A+ +G + N A ++ P + + Sbjct: 423 ENVTERLDLESRYNALIRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDLPEDQLAN 482 Query: 495 KP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 P + L ++ + ++ +L + Sbjct: 483 MPHINDVVEWCAARPDEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYATVPLP-- 540 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 +T ++++ + L + E+ K+ F+ VS+E+R+PLT IIGF+++ Sbjct: 541 -DGGTLVTFVNVTDSVNVERALVEKNEALEQADQLKNAFIQHVSYELRSPLTNIIGFAQL 599 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + +FG L + EYA+YI S + +L I+ND+LD++ I++G M L V + + V+ Sbjct: 600 LSDPKFGELSR-KQGEYADYILSSSSALLAIINDILDLATIDAGIMELDLGEVDVADTVA 658 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ ++ + +I++RT +I + AD R ++Q+ N+++NA+ ++ GG I ++ Sbjct: 659 AAVEGLKDRLADAKIVLRTHVPGDIGTLYADERRLRQVLFNLIANAVRYSDEGGVIDVTC 718 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 V+ V+D G G+ +++ F + R G GLGL + K+ V+ + Sbjct: 719 GRKD-GAVVFTVKDHGCGIPQEMIDQVFSRFVGHDAGTKRR--GAGLGLSIVKSFVELHG 775 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814 G+ I S GT + FP S Sbjct: 776 GQVEIQSREGVGTTVTCTFPAVPES 800 Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 33/386 (8%), Positives = 87/386 (22%), Gaps = 23/386 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYG 145 W DA G + + + ++ +D + + R ++ Sbjct: 211 WQRDAEGRVTWANSAYACAVDVADAATAVRD-----NVDFLDAAGR--EAMSRDRDDDGC 263 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 PI ++ + G + + Sbjct: 264 FRARMPIVAAGERRVFEVT-----DVSANVGGAALAIDISELDRLKKELRRTEEFHGSTL 318 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 +++ S +L + + Sbjct: 319 DQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGRPEDGAVLDALRAARKLPEQADYR 378 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAYFDEG 318 E + ++ + G ++ Y + L + ++ Sbjct: 379 VWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTERLDLESRYNAL 438 Query: 319 ENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + ET+D V+ S G L NP+F + D + ++ +++ Sbjct: 439 IRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDL-PEDQLANMPHINDVVEWCAARP 497 Query: 378 NNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + L S + + L ++ L +P + Sbjct: 498 DEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYATVPLPDGGTLVTFVNVTDSVNV 557 Query: 437 DVDTRINKRKMEIEVMQLCSILEATS 462 + +E + ++ S Sbjct: 558 ERALVEKNEALEQADQLKNAFIQHVS 583 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 32/341 (9%), Positives = 81/341 (23%), Gaps = 32/341 (9%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 S ++ + G + +L R + E+ Sbjct: 7 ACQSTLAAAAPLAEIGLSADKIVWLGALGGACAFAVTAAVAFLRTRRAGDVRMEALARES 66 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +V ++ N + + +D G+ ++ Sbjct: 67 RDLRL--------YVDRLESML--NTEEQRMIAWVGAEDRPRVWGVMP--ESSGAPRAPG 114 Query: 381 IKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMP---QNGIEPE 436 + A L ++ + + + Sbjct: 115 QLLAFGSWLEPKSAEVLEAHLGRLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRD 174 Query: 437 DVDTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 R + ++ +L ++LEA + EG + N A + Sbjct: 175 LTGERQAQAELAARNARLSGELHMLHALLEAMPAPAWQRDAEGRVTWANSAYACAVDVAD 234 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + FL+ M D ++ + + E ++ + + + Sbjct: 235 AATAVRDNVDFLDAAGREAM-----SRDRDDDGCFRARMPIVAAGERRVFEVTDVSANVG 289 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + DISE + K +L ++ + +A Sbjct: 290 GA----ALAIDISELDRLKKELRRTEEFHGSTLDQLATAVA 326 >gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio mimicus VM603] Length = 1053 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 114/423 (26%), Positives = 199/423 (47%), Gaps = 19/423 (4%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIA 466 L E ++ E ++ I KR ++ + +I+E +A Sbjct: 115 RELWQEKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVA 174 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 II+ +G+IL N+ +GY E+ L +P L+ P + LT L + +Q L Sbjct: 175 IIDSQGLILLWNKTAITTYGYTAEEALGQPLLTLLKMALPPELAAALTLPLRAEQQQLLN 234 Query: 527 K---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + T++ L+ + + I +L ++ + D++ K + +L+ AK AE+ Sbjct: 235 EAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS FLA +SHEIRTP+ AIIG S + P + +Y + I S L+L I+ Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVSKIHSSATLLLGII 350 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD SKIE+GK+++ SL+E + + A +K + + S IP ++ D Sbjct: 351 NDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGD 410 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756 + Q+ +N+++NA+ FT G +I +S + +++ V DTG+GMT + Sbjct: 411 PLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNL 469 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814 + F Q S + GTGLGL +++ +V+ G+ + S P G+ F + + Sbjct: 470 FQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNAWFDVDENQ 529 Query: 815 HPH 817 PH Sbjct: 530 APH 532 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 20/205 (9%) Query: 35 ETEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92 E + + + H++ + QE T L I ID+ Sbjct: 120 EKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQ 179 Query: 93 GYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKRQNTW 143 G + ++ T G A + +G L +++ L + P L + + Sbjct: 180 GLILLWNKTAITTYGYTAEEALGQPLLTLLKMALPPELAAALTL-PLRAEQQQLLNEAFY 238 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +T + +GT + + + ++ I+ N + + + K Sbjct: 239 EAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNEAKAK 290 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228 E+K + + Sbjct: 291 AEEAVEVKSMFLANMSHEIRTPMNA 315 >gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010] gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010] Length = 896 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 107/387 (27%), Positives = 196/387 (50%), Gaps = 9/387 (2%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 ++ E + + + E ++L ++L+ T D + IN+ GII + N+A +LFGY +++ Sbjct: 365 MKEELRERKALEATARHESLRLQTLLDNTIDSVITINQSGIIENYNKASVQLFGYQPDEV 424 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPF 550 + K T+ + + + LS + + + K K + + + + Sbjct: 425 IGKNITMLMPASYRDQHKLGMARFLSTEETRIIGKPVEVEALHKSGNTFPIELTLSDFKW 484 Query: 551 SSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 Y DIS+ K E+ L AK AE+ ++ KS+FL+ +SHE+RTPL I+GFS+ Sbjct: 485 EQKYLFTGIARDISQQKAEQEALLKAKYEAERANNAKSEFLSSMSHELRTPLNGILGFSQ 544 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +I + L N + N I SG +L ++ND+L++S+I+SG++ + V + Sbjct: 545 LILSDTEHTL-NEKQRHNINQIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVF 603 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E L+Q A ++ I I +LAD +KQ+ + ++SNAI + +GG++++S Sbjct: 604 EECQPLLQALAKQQNINIDFQ-DGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVS 662 Query: 729 TTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + T N + L + DTG G++ + F ++ Q+ EG G+GL ++K +++A Sbjct: 663 ASVQTHNNSLKLTITDTGKGISKDRQAQVFTAFERL--GQERHVEGAGIGLSVSKRLIEA 720 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G+ ST +GT I PL + Sbjct: 721 MGGQIDFASTEGQGTSFWIELPLSKNA 747 >gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11] Length = 756 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 128/653 (19%), Positives = 239/653 (36%), Gaps = 60/653 (9%) Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 S + D+ P + V S+ +D + Sbjct: 110 ASAPLQPSLEGRPLTDLLGPAQPLTVFGERAGVLSIPVNLTGRDGPEPVLATVRHLDGQL 169 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH--------RNHPSLSAYFDEGE 319 + ++ + + + S L+ + Sbjct: 170 GMIAVVQPESV-VFADWRSALSANVTLYVGVSLVLLAIIYGFFSQASRAEQADENYAATR 228 Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + F + + + S L + DDI +S L + Sbjct: 229 ARIDTALTHGRCGLFDWDLSRGRMFWSSSLYELLGREPKDDILSFSEVSDLTHPDDIDLL 288 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + ++ + + + + + GI + Sbjct: 289 GLAE-----HLLESGETLVDETFRMRHADGSWIWLRARGEIQVDPGRAEPHLIGICLDIT 343 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + ++ ++L +E S+ + N ++ N L P + Sbjct: 344 EQHLLAEQSQMADLRLRDAIETISEAFVLWNTRNELVICNSNYQSLHNLPPSAVKPGTPY 403 Query: 499 V--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + E ++ + L + ++ + Sbjct: 404 KDVLAAAENGPASPQPVQLSKRQGGP---EGSYEAQLEDGRWLQIS---ERRTKDGGFVS 457 Query: 557 TMHDISEWKQEKNKL-----------------------------------SHAKKIAEKE 581 DI+ K+ + +L K AE Sbjct: 458 VGTDITALKKHEERLTESEKRLKATVTDLQRSRKILEVQTRQLSEMAEKYQEEKTRAEAA 517 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA +SHE+RTPL AIIGFS+++ + FGPLG RY +Y I SG +L+++ Sbjct: 518 NQAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIYSSGTYLLNVI 577 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD+SKIE+G+M++ E V+ EA +A ++ A+EK I+I A+N+ + D Sbjct: 578 NDILDMSKIEAGRMSIETEVVNASEAAEDAARIITGAASEKNIVISADVADNL-HVDVDK 636 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R++KQ+ LN+L+NA+ FTP G + + ++V V DTG+G++ ++E+ KPF Sbjct: 637 RALKQVLLNLLANAVKFTPDHGTVTLKARPR-GDKVRFEVTDTGIGISERDIERLAKPFV 695 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q+ N +G+GLGL +A+++V+ + GK I S KGT++ PL T Sbjct: 696 QVENQFTKTHQGSGLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLPLARTD 748 Score = 45.0 bits (105), Expect = 0.048, Method: Composition-based stats. Identities = 32/251 (12%), Positives = 57/251 (22%), Gaps = 11/251 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNT 142 F W++ G S L + +G I + D++ ID LL+ T Sbjct: 243 FDWDLSR-GR-MFWSSSLYELLGREPKDDILSFSEVSDLTHPDDIDLLGLAEHLLESGET 300 Query: 143 WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRL 200 +T + +G+ ++ + R GI + Sbjct: 301 LVDETFRMRHADGS--WIWLRARGEIQVDPGRAEPHL--IGICLDITEQHLLAEQSQMAD 356 Query: 201 DKKFSHLHEIKKG-HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + I + + + I + H + V T Y Sbjct: 357 LRLRDAIETISEAFVLWNTRNELVICNSNYQSLHNLPPSAVKPGTPYKDVLAAAENGPAS 416 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 P E + L Q + E E Sbjct: 417 PQPVQLSKRQGGPEGSYEAQLEDGRWLQISERRTKDGGFVSVGTDITALKKHEERLTESE 476 Query: 320 NLTPETVDKCP 330 TV Sbjct: 477 KRLKATVTDLQ 487 >gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580] gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2] gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC 14580] gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580] gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2] Length = 581 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 103/473 (21%), Positives = 191/473 (40%), Gaps = 49/473 (10%) Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 +L N +L I GL + + + + V + + A Sbjct: 150 DSLQDINQKIWILLGVSLGTAFLIIAGLGARITSQYTNPIESATQVAIELAKG---NYKA 206 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 R E L+ + + Q R E++ +L +++ Sbjct: 207 RTFN---EDETMLSQSINMLAQNLQDMT------------------RAQEMQRDRLQTVI 245 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TE 515 E G+ +I+ +G I NRA K F + +L + LE + + Sbjct: 246 ENIDSGLILIDGKGYIHLVNRAYQKQFHVEADQLLYHFYHEVLEHEEIINLIEEIFMTEA 305 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + + ++ + + I L HD++E KQ + Sbjct: 306 KVRKMFKLPIKIERRYFEVDGVPI-----IGINDEWKGIVLVFHDMTERKQLEE------ 354 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + DF+A VSHE++TP+T+I GF+E + + +++ + I + + Sbjct: 355 --------MRKDFVANVSHELKTPITSIKGFTETLLDGAMNE--RETLLQFLSIILKESS 404 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + ++ DLLD+SKIE L+ + ++ E ++E L++ A EK I + + Sbjct: 405 RLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPDKPA 464 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 D +KQI LN+++NA+ +TP G + IS + V ++VRDTG+G+ E+ + Sbjct: 465 VASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLEDA-VQVKVRDTGIGIKQSEIPR 523 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + F +I + GTGLGL + K +V+A+ G+ + S KGT + Sbjct: 524 IFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRL 576 >gi|302341533|ref|YP_003806062.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301638146|gb|ADK83468.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 993 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 115/666 (17%), Positives = 232/666 (34%), Gaps = 49/666 (7%) Query: 180 GFGIVHVNRVDNDPRALGKRLD---KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-- 234 G+ R + + A + L K+ + E V + + Sbjct: 207 GYLTYREMRAEGERAAAQEVLRQTLDKYRAVLEASPDPVIVYNYVGLVDYVNPAFSRVFG 266 Query: 235 -RMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 R + ++ + + + + L + T + Sbjct: 267 WRADEVLGGKIDFVPDDEKEATLAAINAVYDHPDGLLSFESRRLTRDGRARNVMVSLAVY 326 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNLFYANPS 347 + + + + + E + E + G + + N + Sbjct: 327 RGDGGAPLGMVVNLTDITSMKRSAEALRESEEKFRSISANALDGVVMIDPQGRITFWNQA 386 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + Y + + + L LL P+ + D A R+ + R Sbjct: 387 ATAIFGYAADETLGRE--LHPLLAPPRYHADYVKAFAEF--GDSGTGKAVGRMLELVARR 442 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 +N + Q GI + + + + + + +ILE IAI Sbjct: 443 KNGQEFPAELSVSSLQLHGQWYAVGIVRDITERKQAEEALRQSESRYRTILETVPYSIAI 502 Query: 468 IN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + R G L N L G+ +D L K N P ++ + Sbjct: 503 SDLRSGANLEINDGFCLLSGHSRQDALGKTALDLGLYNRPEDHLTLRDQLERDG--EING 560 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS- 583 + K+ +LL + +++ ++ D+S +Q + + + + ++ Sbjct: 561 QPVTYRAKDGRLLECLVSVRRFVYAGRPCLLSVAQDVSALRQAEREQARLQAQLQRAQRM 620 Query: 584 -HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 V+H+ L AI G++++I P + + YA ID + D+V Sbjct: 621 EAIGTLAGGVAHDFNNILQAISGYTQLI---GGHPGLDQKVRRYAEDIDLAARRATDLVK 677 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 LL S+ K+ + V L+ + A+++++ K + I T ++ + AD Sbjct: 678 RLLTFSR----KVEPALQKVDLNRQIDHAVAMLERTIP-KMVRITTRLDPDLKAVKADPG 732 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGM 748 ++Q+ +N+ +NA P GG+++I T T++E V+LRV D+G+GM Sbjct: 733 QMEQVLMNLGTNARDAMPEGGELMIETQNVRAEDLSPGAACQLTADEYVMLRVSDSGMGM 792 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +K PF G+GTGLGL + +++ + G+ +S P +GT+ EI Sbjct: 793 DAETQKKIFDPFFTTKG----VGQGTGLGLSIVYGIIEGHGGRISCYSQPGQGTVFEICL 848 Query: 809 PLYDTS 814 P+ D S Sbjct: 849 PVADDS 854 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 40/417 (9%), Positives = 104/417 (24%), Gaps = 44/417 (10%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--------Y 144 G + ++ + G A +++G ++ P++ L N Sbjct: 252 GLVDYVNPAFSRVFGWRADEVLGGKI-------DFVPDDEKEATLAAINAVYDHPDGLLS 304 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 ++ +G V + LA G + + ++KF Sbjct: 305 FESRRLTRDGRARNVMVSLAV--YRGDGGAPLGM--VVNLTDITSMKRSAEALRESEEKF 360 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS-----LTEYYAHKDDVLKT 256 + + + I + L H D V Sbjct: 361 RSISANALDGVVMIDPQGRITFWNQAATAIFGYAADETLGRELHPLLAPPRYHADYVKAF 420 Query: 257 EKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSA 313 ++ + ++ E N ++ + +LQ + + Sbjct: 421 AEFGDSGTGKAVGRMLELVARRKNGQEFPAELSVSSLQLHGQWYAVGIVRDITERKQAEE 480 Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + E+ ++ P + G N F LL+ + D + L + Sbjct: 481 ALRQSESRYRTILETVPYSIAISDLRSGANLEINDGFCLLSGHSRQDALGKTALDLGLYN 540 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+ + + + A + + + P + Sbjct: 541 RPEDHLTLRDQLERDGEINGQPVTYRA------KDGRLLECLVSVRRFVYAGRPCLLSVA 594 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + +++ ++ + + + I + G+ N + + GY Sbjct: 595 QDVSALRQAEREQARLQAQLQRAQRM-----EAIGTL-AGGVAHDFNNILQAISGYT 645 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 58/601 (9%), Positives = 144/601 (23%), Gaps = 89/601 (14%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYG- 145 ID G + ++ G A + +G L + H D + ++ G Sbjct: 374 IDPQGRITFWNQAATAIFGYAADETLGRELHPLLAPPRYHADYVKAFAEF---GDSGTGK 430 Query: 146 ------KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + G + +++L ++ + + GIV ++ Sbjct: 431 AVGRMLELVARRKNGQEFPAELSVSSLQLHGQ------WYAVGIVRDITERKQAEEALRQ 484 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDI-------------FSQQSPPPHLRMKNKVSSLTEY 246 + ++ + E ++ + S+Q + + + E Sbjct: 485 SESRYRTILETVPYSIAISDLRSGANLEINDGFCLLSGHSRQDALGKTALDLGLYNRPED 544 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + D L+ + + + + ++ + + L Sbjct: 545 HLTLRDQLERDG-EINGQPVTYRAKDGRLLECLVSVRRFVYAGRPCLLSVAQDVSALRQA 603 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 E + + N+ A + L Sbjct: 604 EREQARLQAQLQRAQRMEAIGTLAGGVA-HDFNNILQAISGYTQLIG------------- 649 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFP 425 P L + + R RL T E +L + Sbjct: 650 ----GHPGLDQKVRRYAEDIDLAARRATDLVKRLLTFSRKVEPALQKVDLNRQIDHAVAM 705 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------EATSDGIAIINREGIILST 477 + + + ++ + Q+ +L +A +G E +I + Sbjct: 706 LERTIPKMVRITTRLDPDLKAVKADPGQMEQVLMNLGTNARDAMPEG-----GELMIETQ 760 Query: 478 NRAVSKLFGYPVEDILRKPFTVF--------LEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 N L + + + ++ T + + L Sbjct: 761 NVRAEDLSPGAACQLTADEYVMLRVSDSGMGMDAETQKKIFDPFFTTKGVGQGTGLGLSI 820 Query: 530 LG--STKEEKLLSLRIIIKKLPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKS 586 + +S + D ++E + + + + Sbjct: 821 VYGIIEGHGGRISCYSQPGQGTVFEICLPVADDSLTEREAPEVVTVRQAQSNGETILVVD 880 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 D A I+ S + + R E A I R+ + +V ++D Sbjct: 881 DEAA------------ILDVSTELLQGAGYKVITARCGEDALEIYRTRGQAISLV--IMD 926 Query: 647 I 647 + Sbjct: 927 L 927 >gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 576 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +++ Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A + I ++ + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 ASQAGLIDGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + K + + + G + S G + P+ Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 19/161 (11%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + V+TR K ++ +Q +I + + G+I N ++ GY Sbjct: 11 VDAQSRAEKIVETRRQKILLKTGALQ-DAIFNSAYFSSIATDEHGVIQIFNVGAERMLGY 69 Query: 488 PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGST 533 ED++ K + + L+ L+ + E Sbjct: 70 HSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYELTYIR 129 Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 K+ LS + + L S+ Y L D + KQE+ Sbjct: 130 KDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEEA 170 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +++ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + T + L S + + E E E Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427 Score = 45.0 bits (105), Expect = 0.055, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312 >gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1192 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 105/518 (20%), Positives = 198/518 (38%), Gaps = 49/518 (9%) Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + + +HG + NP+ L YK + + L L Sbjct: 225 ALENANTRLSTILGTALDGYIIINTHGEISEVNPAVSRLFGYKDSELLGQNVSLLLPLAE 284 Query: 373 PKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + D + +M + + + + E Sbjct: 285 RGMHDVYIRKYLDSGESKIIGKGRELMAQHKEGELFPIELSISKMILDGE---------- 334 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + G+ + D + + + L + LE + DG+ I+ G I N Sbjct: 335 ---------LLFLGLVKDLSDVKRAQVAAQRTESILLATLEGSKDGLITIDITGEIQEVN 385 Query: 479 RAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKE 535 + +F ++ + + + L E + + + Sbjct: 386 DSACLMFQAHSSALVGERMETCLFQGGARATFREILEEYRLTGAGKAFKNATEIFATRFD 445 Query: 536 EKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 KLL + + + L + + DIS + + +L AK+ AE+ S KS FLA +S Sbjct: 446 GKLLPIELTLIPVQLGEEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSKAKSRFLATMS 505 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIR+PL A++G +++ + R N YAN +G +L +ND+LD SKIE+G Sbjct: 506 HEIRSPLNAVLGSVDLLLDSRL----NKEQRIYANTAKEAGTALLSTINDILDFSKIEAG 561 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 +M L S + V++ + ++ A +K I + + N+P ++ D + ++Q+ N++ Sbjct: 562 QMLLEKSSFSAAKLVTQVLQILSPKAQDKGITLASFVNCNVPESLIGDGQRLRQVLQNLV 621 Query: 713 SNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI F+ SGG I + + ++ V D G+G++ K F Q+ + Sbjct: 622 DNAIKFS-SGGCIAVEMWLLESQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHDEHN 680 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GTGLGL + ++ G + S +G+ Sbjct: 681 TNYSGTGLGLAICAELITRMEGSIAVRSEQGRGSCFSF 718 Score = 84.7 bits (208), Expect = 6e-14, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 6/172 (3%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +P ++ + E +D + +E +L +IL DG IIN G I Sbjct: 197 VPVTSQDEIGQAAHAFNQMVEQIDIKT--HALENANTRLSTILGTALDGYIIINTHGEIS 254 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGST 533 N AVS+LFGY ++L + ++ L + + Y+ + L + + + + Sbjct: 255 EVNPAVSRLFGYKDSELLGQNVSLLLPLAERGMHDVYIRKYLDSGESKIIGKGRELMAQH 314 Query: 534 KEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 KE +L + + I K L + + D+S+ K+ + + I Sbjct: 315 KEGELFPIELSISKMILDGELLFLGLVKDLSDVKRAQVAAQRTESILLATLE 366 Score = 41.9 bits (97), Expect = 0.50, Method: Composition-based stats. Identities = 26/252 (10%), Positives = 65/252 (25%), Gaps = 18/252 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144 I+ HG + E++ + + G +++G + + + ++ I L + Sbjct: 247 INTHGEISEVNPAVSRLFGYKDSELLGQNVSLLLPLAERGMHDVYIRKYLDSGESKIIGK 306 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + EG + + ++ + + + E G+V + +R + Sbjct: 307 GRELMAQHKEGELFPIELSISKMIL---DGELL---FLGLVKDLSDVKRAQVAAQRTESI 360 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKT---- 256 E K +I V E + T Sbjct: 361 LLATLEGSKDGLITIDITGEIQEVNDSACLMFQAHSSALVGERMETCLFQGGARATFREI 420 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + LT + + + + E + S ++ Sbjct: 421 LEEYRLTGAGKAFKNATEIFATRFDGKLLPIELTLIPVQLGEEMLLTAFIRDISRRMEYE 480 Query: 317 EGENLTPETVDK 328 L E ++ Sbjct: 481 TQLKLAKEQAEQ 492 >gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1204 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 110/515 (21%), Positives = 194/515 (37%), Gaps = 27/515 (5%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL----TKYKSVDDIE 361 + D + V L N ++ L + Sbjct: 415 ARKQSEEELSKYLARLNAIFDSSSHLIWSVNKSLQLTSFNRNYADLIHNQLGVRPSLQSS 474 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 ++ L I + + F Sbjct: 475 AEKFGWRMVGNSNRRTLETKYRQALR---GEPQYFE---FKIDRKDAGEMWLEFYLNPIH 528 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 +GI + + + + I E D INR G I +++V Sbjct: 529 YADGVIEEVSGIARDITRRKEAELSLRHSEELFRGIFENLQDIYCRINRLGEITMISQSV 588 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 K GY E+++ T F ++ L + K+ Sbjct: 589 LKRLGYLPEEVIGHKITEFFA--DKKRIHSALIRLRKTK--SLRNFEITMYRKDGTERQF 644 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 I + ++ DI+E K+ + +L AK+ AE+ K FLA +SHEIR Sbjct: 645 MINMLMFTNDKGKPTEVAVLARDITELKRNELELLKAKEHAERSLKVKEGFLANMSHEIR 704 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ +IG +++ N +Y I RS +L+I+ND+LD+SKIE+GKM L Sbjct: 705 TPMNGVIGMIDLLGETPL----NTEQKDYVLTIKRSSETLLNILNDILDLSKIEAGKMEL 760 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 H P++++E + + +SL A K + +IP+ I+AD + QI N+ SNA+ Sbjct: 761 HEAPIAVEELLLKLVSLFGQTAKSKGNTLSYHVGPDIPKFIIADQTRLLQIMSNLTSNAL 820 Query: 717 HFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT +G ++ ++ ++ + V+D+G+G++ + + F Q+ NS + G Sbjct: 821 KFTENGSVKVFLTLVKKDGLFHKIKVDVQDSGIGISATDKQILFTSFTQLDNSSRKSFGG 880 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 TGLGL ++K + G+ + ST +G+ F Sbjct: 881 TGLGLAISKQLCALMNGEIGVESTLGEGSTFWFTF 915 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 92/289 (31%), Gaps = 16/289 (5%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 T+ + +S + +P L+ T + + + L+ Sbjct: 5 LSQTDWQTIHHTLQHLNLIGITFSPDFVIRSVSPHALMKTGWHESE-LVGFSIFDKLIPR 63 Query: 373 PKLSDNN---AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + ++ + A+ T++ + Q + Sbjct: 64 DEEHEVRQMLEEGIQGKRKLEQREVPFLAQKGTLR-------TFSINSVLIHQQNGDVEC 116 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + R + + QL +++ TSD I ++ +G + N+A ++ GY + Sbjct: 117 ITLVGDDITRRRRMESAIAKSNSQLQDLVDNTSDLIQLVAIDGKFIFVNKAWREVLGYGL 176 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++I L L +I + E + + ++ ++ + + Sbjct: 177 DEIASMRMEDILHPQHKEEALEQLKKIEQGIANPSFEAVFMNRDGKKVFVAGSVNCRFDN 236 Query: 550 FSS-CYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHE 595 + ++D +E + + L ++ + + +F + H+ Sbjct: 237 GKPTAFRCILNDFTEKIRAEKAQNLYYSIANWTVNTQNLDEFYHGI-HD 284 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 11/167 (6%) Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 +G + + ++ ++ + +L +I +++S I +N+ + S NR Sbjct: 396 DTRDLELLEFISGQVAMAIARKQSEEELSKYLARLNAIFDSSSHLIWSVNKSLQLTSFNR 455 Query: 480 AVSKL----FGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + L G + F + N+ Q E K Sbjct: 456 NYADLIHNQLGVRPSLQSSAEKFGWRMVGNSNRRTLETKYRQALRGEPQYFEFKI--DRK 513 Query: 535 EEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKI 577 + + L + + ++ DI+ K+ + L H++++ Sbjct: 514 DAGEMWLEFYLNPIHYADGVIEEVSGIARDITRRKEAELSLRHSEEL 560 >gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 699 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 90/418 (21%), Positives = 182/418 (43%), Gaps = 18/418 (4%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + L + + G + R ++++ +L SIL++ G+ Sbjct: 30 RGQWWLLPLALLLGLLPAAYLDHLLAGFRRDSEQQRQTEQRLRDSEGRLSSILQSIGAGV 89 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLR 522 +++G + N +L G+ + D L +P L + + + L ++L Sbjct: 90 IATDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEI 149 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAE 579 + + + + + + + + S D ++ ++ L AK+ AE Sbjct: 150 IDWRERLMLTPRRGEPCPVACTVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAE 209 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K +FLA +SHEIRTPLTA++G ++++ R + + +Y +G +LD Sbjct: 210 GALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRL----DSQQRQYVAASRAAGENLLD 265 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 ++N +LD+SKIE+G++ + LD+ V + ++ L A ++ + + P ++ Sbjct: 266 LINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVM 325 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYE 752 D ++Q+ +N++ NAI FT G ++++ V DTG+G+ + Sbjct: 326 GDPTRIRQVLVNLIGNAIKFTEEG-RVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAK 384 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E + F Q +S R GTGLGL +++ +V G+ + S G+ + PL Sbjct: 385 QEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREGGGSTFTMEIPL 442 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 37/158 (23%), Gaps = 4/158 (2%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362 + E + G L + NP LT + VD + Sbjct: 60 DSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLVDALNR 119 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G L + S P+ D I RL E + A+ Sbjct: 120 PVG-EVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEP-CPVACTVAPIAS 177 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + R + + Q L A Sbjct: 178 FSG-IIGAVFVFRDTRREREIQSHLLAAKEQAEGALRA 214 Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats. Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 13/144 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNT-- 142 D G L ++ + G + + +V + + + + +L+ Sbjct: 92 TDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEIID 151 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLD 201 W + L P G V +A + FSG G + R + + ++ Sbjct: 152 WRERLMLTPRRGEPCPVACTVAPIA------SFSGIIGAVFVFRDTRREREIQSHLLAAK 205 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 206 EQAEGALRAKGEFLAGMSHEIRTP 229 >gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1218 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 87/633 (13%), Positives = 216/633 (34%), Gaps = 28/633 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLT 244 + + + +L +K + + +G ++ K + + + Sbjct: 600 HEIAERQQVEIQLRQKLAAIEATTEG-IAILNAKGEYTYLNPAHVQLFGYDTSEALLGKS 658 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-L 303 + + + + + + T + + + + N + Sbjct: 659 WRHLYPPEEITRFERDIFTILQQQGYWRGEAVALRQNGSKFAEEVSLTLTPEGNFICICR 718 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 A E T ++ + N +F + Y + + Sbjct: 719 DITQRQQTEAALRTSEERFRSTFEQVTVGITHTGWDDRFLRVNQTFCDIVGYTVDELLTK 778 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + P D + L + + R I+ + + + + Sbjct: 779 TFVD---ITHPDDVDGDKYYVNQLLAGEIKTFSMEKRY--IRKDG-SIVWVNLRGSLVRK 832 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAV 481 E G+ + D + + ++ + + E + I + + ++ + A Sbjct: 833 STGELDYFVGVIEDIRDRKRTEAALQESEQRFRQLAENIHEVFWITDVAKSQMIYVSPAY 892 Query: 482 SKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +++G + I P + + + + + + + Sbjct: 893 QQIWGRSCQSIYDNPLSFVETIHPEDRERVMAAFAKQARGE----YHEDYRIIQPGGEQR 948 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +R + +S DI+E+KQ + ++ A ++ + KS F++ SHE Sbjct: 949 WIRDRAFPVYDTSGQVYRIVGIAEDITEYKQAEQEIRQALAREQELNELKSRFISMTSHE 1008 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 RTPLT I+ +E + + + I + + + ++ND+L + K E+GK+ Sbjct: 1009 FRTPLTTILSSTE-LLKYYSSKFTEEKKQIHFERIQSNVHHITQMLNDILLLGKAEAGKL 1067 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + + + + + + + Q R + + + + D + ++ I N+LSNA Sbjct: 1068 DFNPAQMDVRQFCQQLVEEFQ-QGIGHRHSLCFTHQGQLTPVSLDEKLLRHILGNLLSNA 1126 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + ++P + + T N E+I R++D G+G++ + ++ + F + + GTG Sbjct: 1127 LKYSPIDRPVCLELTCRHN-ELIFRIKDQGIGISETDQQRLFESFHR--GTNVGNISGTG 1183 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LGL + K VD + G + S GT ++ Sbjct: 1184 LGLSIVKKAVDRHGGTINLESKLGVGTTFTVVI 1216 Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats. Identities = 48/446 (10%), Positives = 124/446 (27%), Gaps = 30/446 (6%) Query: 22 TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQN-QESVSNTNYLDSENTFVFDPIP 80 T+ + +K+++ + K + E + Q ++Q Q ++ ++ + I Sbjct: 561 TELIQRKRVELELQQAKQELERRVEERTAQLQQSNQKLQHEIAERQQVEIQLRQKLAAIE 620 Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDP-NNHIGDLLK 138 T ++A G ++ + G + ++G + I I +L+ Sbjct: 621 ATTEGIAILNAKGEYTYLNPAHVQLFGYDTSEALLGKSWRHLYPPEEITRFERDIFTILQ 680 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 +Q W G+ G+ + L P F I A + Sbjct: 681 QQGYWRGEAVALRQNGSKFAEEVSLTLTP----EGNF-----ICICRDITQRQQTEAALR 731 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK 255 +++F E + + ++ H DDV Sbjct: 732 TSEERFRSTFEQVTVGITHTGWDDRFLRVNQTFCDIVGYTVDELLTKTFVDITHPDDVDG 791 Query: 256 TE--KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHP 309 + LL E + ++ + + + ++ ++ E R+ Sbjct: 792 DKYYVNQLLAGEIKTFSMEKRYIRKDGSIVWVNLRGSLVRKSTGELDYFVGVIEDIRDRK 851 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 A E E + + F++ + Y +P++ + + Sbjct: 852 RTEAALQESEQRFRQLAENIHEVFWITDVAKSQMIYVSPAYQQIWGRSCQSIYDNPLS-- 909 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 ++ + R R I + F + + Sbjct: 910 --FVETIHPEDRERVMAAFAKQARGEYHEDYR---IIQPGGEQRWIRDRAFPVYDTSGQV 964 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ 453 GI + + + ++++ + + Sbjct: 965 YRIVGIAEDITEYKQAEQEIRQALAR 990 Score = 81.6 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 74/240 (30%), Gaps = 22/240 (9%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + ++ ++ + ++ + L + Sbjct: 527 APRQWQTSEIELLQQLAVQVGIGIQQSSLFEQVQTELIQRKR------VELELQQAKQEL 580 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E + ++ E + + + ++ +L +I EAT++GIAI Sbjct: 581 ER--------RVEERTAQLQQSNQKLQHEIAERQQVEIQLR---QKLAAI-EATTEGIAI 628 Query: 468 INREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +N +G N A +LFGY + +L K + + + IL E Sbjct: 629 LNAKGEYTYLNPAHVQLFGYDTSEALLGKSWRHLYPPEEITRFERDIFTILQQQGYWRGE 688 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + L + + + + + DI++ +Q + L +++ + Sbjct: 689 AVALRQNGSKFAEEVSLTLTP---EGNFICICRDITQRQQTEAALRTSEERFRSTFEQVT 745 >gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1486 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 130/799 (16%), Positives = 294/799 (36%), Gaps = 42/799 (5%) Query: 36 TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVF----DPIPRTVRFTWNIDA 91 ++ E S E E+ + + F ++ + +++ Sbjct: 563 AGRASAELERKRSDEALQQLKATLEAQVEERTQQLQESQRFIQQITDQSPSILYLYDL-Q 621 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLL-KRQNTWYGKT 147 I++E+ + +G ++ M + + + N + L + Q+ Sbjct: 622 EQRNIYINQEVSRILGYSPTEIQEMGNLIISRLIHPQDLSRFNRYLEQLKQAQDHEILGV 681 Query: 148 TLWPIEGTNLYVPIDLAAL-PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + + ++SR+ + + G+ ++ Sbjct: 682 EYRFQDIKGQWRW--FSGRDAVFSRDSQGRVKQVIGVAQDITERKQAEQTLYLQAQQEKL 739 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L EI + + + L ++V D + ++ Sbjct: 740 LREINQRIRQSLDLQTIFDTACQEILLLLQVDRVGIFRFDPESHYDDGEFIAEAMVAGLP 799 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 S++ H + L + + E + L Sbjct: 800 SAIAIHVHDHCFGEKFSSLYAQGKFLAVDDINNSELMDCHREILSQFQIKAHLVLPLLCE 859 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 ++ V+ + + + + L + + + IA ++L + + + Sbjct: 860 EQLWGLLCVHQCYDTRHWKEAEIKLLQQITHQ-LTIAIQQASLYEQIRQKLRQQQAIAAI 918 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + R + L+TI + ++ + ++ ++ Sbjct: 919 VQQVRQSLNIEEILNTITQD--------VRALFDCDRVIIFRLYSDGGSRIIEESVSTEF 970 Query: 447 M------EIEVMQLCSILEATSDGIAIINREGIIL--STNRAVSK-LFGYPVEDILRKPF 497 + + IL + I+ N ++ L Y E ++ Sbjct: 971 LPLKYCHWDDETWSQDILN------LYWQGQPRIVPDVMNDIYTECLHEYSREGQIQSKI 1024 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + + NH + S + + + + + +E+++ ++ ++ Sbjct: 1025 VAPILLDLKEKENH--RWVASTNSHKLWGILVVHACREKRVWQNSEAQLLQQIANQLAIA 1082 Query: 558 MHDIS--EWKQEKNKLSHAK-KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + S E Q + + K ++ + K +FLA +SHE+RTPL AI+G +E ++++ Sbjct: 1083 IQQASLFEQLQVEIEDKQQKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEI 1142 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 FG + N R + I+++GN +L+++ND+LD+SKIESG++ LH + +++ Sbjct: 1143 FGQI-NERQRKSLKIIEQAGNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAF 1201 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 V+ A +KRI + + ++NI + D R ++Q+ +N+L+NA+ FTP GG++ + Sbjct: 1202 VKQQAVKKRIQLDFNISSNILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGE 1261 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V V+DTG+G+ + K +PF QI ++ + GTGLGL L K +VD + G+ + Sbjct: 1262 NTVRFAVKDTGIGIAAENIPKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSV 1321 Query: 795 FSTPAKGTLIEIIFPLYDT 813 S G+ + PL ++ Sbjct: 1322 TSELGVGSCFSVDLPLMES 1340 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 57/574 (9%), Positives = 133/574 (23%), Gaps = 74/574 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 + D GY ++ + G + + G V D + ++ + Sbjct: 195 IFRTDTQGYCVYVNPRWCEIAGLTSEEAKGKGWEQVLHPDDDDEVSAQWYRSVEENRLFQ 254 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + G Y + ++ + N++ G+ G + K + Sbjct: 255 LEYRFKRPNGEIRY--VYGQSVALRDINQQIIGYLG--TITDITEQKKTEYRLKEALRLA 310 Query: 205 SHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + E+ + P P + L H DD K Sbjct: 311 KLGNWELDVQNNIGYWSEEVFHIFGREPQPFSPSFDGFLEL----VHPDDRSKVVASYTQ 366 Query: 263 TSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E+ E + + T + + L + + Sbjct: 367 HLEKRIPHEVVHRVPMPDGRIKVVVERCETAYDAEGKPIHSLGTVQDITEYYKQETILKK 426 Query: 322 T-------------PETVDKCPIPFFV----------YSHGNLFYA-NPSFLLLTKYKSV 357 V V + + Sbjct: 427 LLAGTSNTLTQEFFSALVRHIAEALEVSYVIIAELIDERLHTFAFWGDEQLQKNIDVAIC 486 Query: 358 DDIEIAGGLSTLL-------------DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + ++L + I L Sbjct: 487 QTPCEYVIKDGFFYCSHSIQEQFPQNTHLAQMQAESYLGIVLTDKNSHPIGILCVLDVKP 546 Query: 405 WNRENSLAMTFIPFE--------KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 +RE + + I + + Q + ++++ + Sbjct: 547 MDRETAEMIQQILQIFAGRASAELERKRSDEALQQLKATLEAQVEERTQQLQESQRFIQQ 606 Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHY 512 I + + + + + +E + N+ VS++ GY +I + + S N Y Sbjct: 607 ITDQSPSILYLYDLQEQRNIYINQEVSRILGYSPTEIQEMGNLIISRLIHPQDLSRFNRY 666 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC----YSLTMHDISEWKQE 567 L ++ + L + + S DI+E KQ Sbjct: 667 LEQLKQAQDHEILGVEYRFQDIKGQWRWFSGRDAVFSRDSQGRVKQVIGVAQDITERKQA 726 Query: 568 KNKLS---HAKKIAEKESSHKSDFLARVSHEIRT 598 + L +K+ + + L +++T Sbjct: 727 EQTLYLQAQQEKLLREINQRIRQSL-----DLQT 755 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 6/160 (3%) Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + +RK++ + S+ E GI + +G + N ++ G Sbjct: 157 QAAILDEINHISSPKQEQRKLQESELNYTSLAEIAPIGIFRTDTQGYCVYVNPRWCEIAG 216 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 E+ K + L + ++ + + + + ++ + Sbjct: 217 LTSEEAKGKGWEQVLHPDDDDEVSAQWYRSVEEN--RLFQLEYRFKRPNGEIRYVYGQSV 274 Query: 547 KLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 L + Y T+ DI+E K+ + +L A ++A+ + Sbjct: 275 ALRDINQQIIGYLGTITDITEQKKTEYRLKEALRLAKLGN 314 >gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1102 Score = 347 bits (891), Expect = 4e-93, Method: Composition-based stats. Identities = 101/430 (23%), Positives = 189/430 (43%), Gaps = 32/430 (7%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIA 466 +++A+ + N + +++ ++ ++ ++ +L + I++ I Sbjct: 315 SAMAVFIVGIVLTVLLALQFRNNALRTSEIEWQVAEKTAQLRKSELRAEAIIDKAVIPII 374 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I+ GI+ S NR+ K+FGY E+I+ + + + + S N Y+ L + + Sbjct: 375 TIDETGIVQSFNRSAEKMFGYGPEEIIGRNVRMLMPEPHRSSHNKYVDHYLKTGRMKAIG 434 Query: 527 K--ITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAK-------- 575 G K+ + + + ++ + + D+SE + + L + Sbjct: 435 VGNKLTGVRKDGVEFPMHLSVSEVRLEKRIFVGMVVDLSEINRAEEALRKHRDNLARLVE 494 Query: 576 ----------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + AE + KS FLA +SHEIRTP+ +++GF ++ R L Sbjct: 495 ERTYELKIAKEAAETANIAKSAFLANMSHEIRTPMNSVLGFIQITLESR---LLCAELRR 551 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + S +L I+ND+LD+SK+ESG+ L + + V EA+ V+ A EK I Sbjct: 552 HLETAYSSAKGLLIIINDILDVSKLESGEFALEATCLDMPRIVQEALKTVESQAEEKGIG 611 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVR 742 + F ++P D + Q+ +N++ NAI FT +G +I I + + + V Sbjct: 612 LDFHFDADLPHCYLGDPTRLGQVIINLVGNAIKFTKTG-KITIGVRASDQGDASLHFSVA 670 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+GMT + PF Q S GTGLGL ++K +V+ G+ ++ S +G Sbjct: 671 DRGIGMTAEQAANIFNPFTQADISTARCYGGTGLGLTISKQLVELMGGRIWVESELGRGV 730 Query: 803 LIEII--FPL 810 P+ Sbjct: 731 TFHFTAQLPV 740 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 12/157 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143 ID G ++ + K G ++IG + + H +N + LK Sbjct: 376 IDETGIVQSFNRSAEKMFGYGPEEIIGRNVRMLMPEPHRSSHNKYVDHYLKTGRMKAIGV 435 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 K T +G + P+ L+ + R F G V N ++ Sbjct: 436 GNKLTGVRKDG--VEFPMHLSVSEVRLEKRIFVGM-----VVDLSEINRAEEALRKHRDN 488 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + L E + + KE + + M +++ Sbjct: 489 LARLVEERTYELKIAKEAAETANIAKSAFLANMSHEI 525 >gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia acidovorans SPH-1] Length = 842 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 115/615 (18%), Positives = 222/615 (36%), Gaps = 23/615 (3%) Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L +G Q PH + + + +PLL Sbjct: 227 RPLASTNEGTGVQTAAALQTPLFQEWLPHSEFGSYIGAGMLGRHQIVSFRTVRNWPLLLV 286 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E N + + R S ++ + Sbjct: 287 VEEPYAAMVARWRDNAFAFFVAGVALLGLVLGLSWSVLKTRRVQKSALQAMEQAQARLAR 346 Query: 325 TVDKCPIPF-----FVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + + ++ + L + N + LT S + + L ++D L+ Sbjct: 347 SEHEMAVLMRSVQELIFRTDSQGLLTFVNARWEQLTGQPSAEAVGQP--LENIVDGSYLA 404 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 A+ + + R C A + + I + + + G + Sbjct: 405 QIQALLDPLARLAPRNCQAM------FRLPGNRE-MLCDIAVVPLLRDGQLVGFAGSAVD 457 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 +++++ ++ + E T + + + + + N+A FG +L Sbjct: 458 VTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVALVNKAWEDFFGRGRYAVLGHE 517 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554 ++ + ++ R +E + + + K Sbjct: 518 IKGLHARDDALLQMRSNQVVMRSGQRMMVEARLPHVDGSYRDVQISKAAVKNAQGRITGV 577 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 D+SE++ ++ A+ AE+ KS+F+A +SHE+RTPL +I+GF+E+ Sbjct: 578 LSIFVDVSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAEL---GG 634 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 GNP + N I +G +L +VNDLLD++K+ES +H E L + + Sbjct: 635 LRSRGNPAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRSLIRPVVRE 694 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ +K I +R + AD +Q+ N+L+NAI F+P GG+I + Sbjct: 695 LEPQQQQKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDEQ 754 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 ++ + V D G G+ EL+K +PF Q ++ GTGLGL + + ++DA G Sbjct: 755 GDICIAVSDQGPGIPPQELDKIFQPFVQSSKTRNGS-GGTGLGLAICRKIIDAMDGTIAA 813 Query: 795 FSTPAKGTLIEIIFP 809 + G+L I P Sbjct: 814 SNRSEGGSLFRITLP 828 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 11/287 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + D+ G L ++ + G + + +G L ++ D ++ + D L R Sbjct: 361 LIFRTDSQGLLTFVNARWEQLTGQPSAEAVGQPLENIVDGSYLAQIQALLDPLARLAPRN 420 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKK 203 + + D+A +P+ R+ + GF G + R Sbjct: 421 CQAMFRLPGNR--EMLCDIAVVPLL-RDGQLVGFAGSAVDVTARWKAQQELQTQLAFQHL 477 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + ++ + + + +DD L + + Sbjct: 478 LFETTPLPMLVTDADQRVALVNKAWEDFFGRGRYAVLGHEIKGLHARDDALLQMRSNQVV 537 Query: 264 SEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E ++ + + ++N LS S + Sbjct: 538 MRSGQRMMVEARLPHVDGSYRDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATREA 597 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + ++ + + F AN S L T +S+ GGL + Sbjct: 598 RDAAEEA------FRVKSEFVANMSHELRTPLQSIMGFAELGGLRSR 638 >gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans DSM 771] Length = 1172 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 110/514 (21%), Positives = 209/514 (40%), Gaps = 39/514 (7%) Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 +N P V + N + + + I Sbjct: 165 EKNKFHTIFQSMAEPVIVVDAKRRIREINNAAVKCFNLDYKNVIGKP-------CYEIFR 217 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + L R+ R +I N + + + + Sbjct: 218 CCHELDECPLKRAMREASQYDNLEISIDINNH-LRKFLVSGSFLEDISGKFAGGVELFID 276 Query: 437 DVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK-LFGYP 488 ++R N+ K+ ++E +L +++ +G+ + I+ N + G Sbjct: 277 VTESRENELKLLKARNDADLEAAKLRAMISGMGEGVVFADAGDRIIEVNDFFLNYIAGCS 336 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++L K F + + + + + + L + + ++ + Sbjct: 337 RSELLGKSIWDFHAGDLLGEVRNLINSFKTKSYSSHVSVTRRIRE-----LEMIMRVQPI 391 Query: 549 PFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + Y + D++E + + + AK+ AE + KSDFLA +SHEIRTP+ I+G Sbjct: 392 YSNGLYQGVLLNAIDVTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILG 451 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F+E++ NQ E I G +LD++N++LD+SKIESGKM L SL+ Sbjct: 452 FAEILLNQALSS----EQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLE 507 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + I+ V+ A +K + IR +F ++IP+ + D ++QI N+L NA+ FT G Sbjct: 508 NIIKDVITTVRQKAQDKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQGS- 566 Query: 725 IIISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +IIS + E + + V DTG+G++ + E F Q + G+GL Sbjct: 567 VIISVSKRQEECHERDDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGL 626 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL + ++++D G+ ++ S +GT+ P+ Sbjct: 627 GLTICRSLLDLMGGEIWVNSNKPQGTIFTFCLPV 660 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 7/161 (4%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R + E + +I ++ ++ + +++ + I N A K F ++++ K Sbjct: 151 RVSQLQEVNRILTNEKNKFHTIFQSMAEPVIVVDAKRRIREINNAAVKCFNLDYKNVIGK 210 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P + LE + L + L S Sbjct: 211 PCYEIFRCCHELDECPLKRAMREASQYDNLE---ISIDINNHLRKFLVSGSFLEDISGKF 267 Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 D++E ++ + KL A+ A+ E++ ++ + Sbjct: 268 AGGVELFIDVTESRENELKLLKARNDADLEAAKLRAMISGM 308 >gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus thermophilum H-6-12] Length = 815 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 166/372 (44%), Gaps = 32/372 (8%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--------ILRKPF 497 ++ +E ++ ILE DG+ I++ + N ++F E + + Sbjct: 339 EVNLEREKMKKILENVGDGLVILDGRKRLSMFNNVAEEIFKLSPEQKEKRCTEVLKCRNL 398 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + L + + + E KE L + + + L Sbjct: 399 SGELMCSECPLDKMVFQGL----SLMQYEMKVWNGEKEIILGCNLSSTWEGRKVTNFILA 454 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DIS +A++ KS+F+A VSHE++TPLTAI G+SE++ P Sbjct: 455 LRDIS--------------LAKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPP 500 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + Y I + + ++NDLL++S+IESGK+ L E V + + + E + Q Sbjct: 501 ---EKVRNYYQIIYKESERLTQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQT 557 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 ++ I F IL D + Q+ N+L NAI ++P+GG I + + E++ Sbjct: 558 QTSKH--TIVLQFPEYPTFILGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVS-DKMEDI 614 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ V+D G+G+ L F ++ +S + GTGLGL + K++++A+ GK + S Sbjct: 615 VIEVQDQGIGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASK 674 Query: 798 PAKGTLIEIIFP 809 +GT I P Sbjct: 675 VGEGTTFTIRLP 686 >gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 611 Score = 347 bits (890), Expect = 4e-93, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 188/389 (48%), Gaps = 14/389 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + +E + + D I+ R G + + A L G PV ++ Sbjct: 193 RTGASLLNVEEDRYRLLARHMGDVISRHRRNGAVQFISPAAESLLGVPVSELQDHGLFDR 252 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE---------EKLLSLRIIIKKL--- 548 + L Q++E + + + + L Sbjct: 253 VHVADRPAYLTTLAAAALGKGAQSVEFRLRREAASDARFEAHLSGDFIWVEMRCQPLESS 312 Query: 549 -PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 P M ++++ KQ+++ L A+ AE+ + K+ FLA +SHE+RTPL AIIGFS Sbjct: 313 SPAEPEVVAVMREVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFS 372 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+I + PL R EYA I+ SG +L +VN +LD+SK+ESG + EP + E Sbjct: 373 EMIVQEATLPLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREV 432 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + +L+ L A + I + T N+P+++ D R+ +QI LN++SNAI FT GG++ I Sbjct: 433 LLNGCNLLALKARDNGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTI 492 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S ++LRV D GVG+ +L++ PF Q + Q R EGTGLGL + K +V+ Sbjct: 493 SARVE-GARMVLRVMDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVEL 551 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G+ + S +GT + ++ PL T P Sbjct: 552 HRGEIDVQSKVEEGTTVTVMLPLTLTLVP 580 >gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1248 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 104/533 (19%), Positives = 203/533 (38%), Gaps = 39/533 (7%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK 355 + E ++ + P+ ++ G + N F+ Sbjct: 302 VSLMVVALSAIMVRMLNELRESDSRHRIMFENSPLGIVYLKDDGTIINCNDKFVEQMGST 361 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 I + K S N + V + +I + + L + F Sbjct: 362 KDKIIG--------FNQAKQSGINLQEKVKNALA-GDLSVFEDVYTSITGAKTSFLHIIF 412 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 P N + D + +++ + E +L+ + E Sbjct: 413 NPI---NPGKNPTEVIATIEDITDRKESEQALAREAEDRRILLDTIPTQVWYQPDEYSYG 469 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+A + G + + K + + SV +E+ E+ ++ E Sbjct: 470 VVNKAHASFVGIQEDQLAFKKLSEVYPPDVVSVCIQSSSEVFRNGKTIVTEEWVPNASGE 529 Query: 536 EKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQ--------------EKNKLSHAKKIAE 579 +LL + KK + + DI+E ++ +L+ A A+ Sbjct: 530 ARLLLITKSPKKRENGTVEYIVFAAEDITEQRRSVDSLADYANRMELTNKQLNIALARAD 589 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + K DFLA +SHEIRTP+ +IG + ++ + +A I SG L+L Sbjct: 590 EAAKAKGDFLANMSHEIRTPMNGVIGMAGLLLDTSL----TDEQQRFAETIRSSGELLLL 645 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 +VND+LD SKIE+GK+ L L + + + + + + ++ K + + + ++P ++ Sbjct: 646 LVNDILDFSKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSKGLELLCATDPSVPYQLQ 705 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754 D ++QI N++ NAI FT G Q+ + + + +E + V DTG+G+ + + Sbjct: 706 GDPARLRQILSNLVGNAIKFTVQG-QVSVRVSIVNEKESDCILKFSVSDTGIGIQSDKQV 764 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + F Q+ S + GTGLGL ++K +V+ G + S +G Sbjct: 765 LIFEQFNQVDASTTRKFGGTGLGLAISKRLVEMMGGTIGVESNLGEGASFWFT 817 >gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1086 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 116/644 (18%), Positives = 230/644 (35%), Gaps = 41/644 (6%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 A R + L + ++ K+ I + + E Sbjct: 330 EIEQRTRAEAQVARSREWMHSLLDHLPLSVYLQTGKHRIAFANEHFRRTLGRCEDGPCHE 389 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + + + +L + + F + + Sbjct: 390 VIYGRREPCVHCRTREVLESGRALTWETTTRD-GATLLVRNLPFRDMDGTPVVLAAAMDI 448 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364 + E ENL +D P + + + + L LT + + Sbjct: 449 SGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESRHLFVSRNVLELTGVPASAFLGK-- 506 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 S L + + + AA ++ W +S + F + ++ Sbjct: 507 -TSRELGIDEELCRFWDEHIRRVFETGEPQAAEFHMN---WRGRSSH-FDWRLFPERDES 561 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG-----IIL 475 E + + R +++ + DG I + G L Sbjct: 562 GEVQSVFSLSRDITRQRSLEKE-------YELLFHRMLDGFASHEIICDEAGVPVDYRFL 614 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A ++ DI+ + + Y L+ + + + ++ Sbjct: 615 RVNPAFERITDVTAADIVGRTLLEVFPGTERYWIETYGKVALTG---EPIHFEHYAAEQD 671 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 K ++ P ++ DI+E L AK +AE S KS+FLA +SHE Sbjct: 672 -KFFNVSA---FRPAPGQFACIFSDITERVLTSRALVEAKDLAESASRVKSEFLANMSHE 727 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTPL I+G ++++ EYA Y ++ + ++ D+LD+S+IE+GK+ Sbjct: 728 IRTPLNGIMGMLQLLRAGDL----TEEQAEYAAYGIKASRRLTRLLTDILDLSRIEAGKL 783 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 ++ EPV+L + +S + + A K + + +++P + D ++Q+ +N++ N Sbjct: 784 DIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLPDRLFGDDTRIQQVLVNLIGN 843 Query: 715 AIHFTPSGG-QIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 AI +T +GG + ++T V+ V DTG+G+ + +L + F Q+ + Sbjct: 844 AIKYTETGGVTVEVTTLPRLRPDTVHVLFTVTDTGIGIPDDKLGTVFEHFTQVSSGFTRH 903 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +G GLGL + K M+ G + S P +GT+ + PL Sbjct: 904 YQGAGLGLAITKRMIGLLGGTLAVDSEPGRGTVFGLCVPLRPAD 947 Score = 94.3 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 40/343 (11%), Positives = 90/343 (26%), Gaps = 30/343 (8%) Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 P + +++ + L F +Q N K + A Sbjct: 284 PRPKPSFLQTARQSLVFVLPLALVMAVGGLIFLKIQVNRKTAHLREEIEQRTRAEAQVAR 343 Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 +D P+ ++ + + +AN F E + + Sbjct: 344 SREWMHSLLDHLPLSVYLQTGKHRIAFANEHFRRTLGRC-----EDGPCHEVIYGRREPC 398 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + V + A +L + +PF + P + Sbjct: 399 VHCRTREV--------LESGRALTWETTTRDGATLLVRNLPFRDMDGTPV---VLAAAMD 447 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + ++++ D + +RE L +R V +L G P L K Sbjct: 448 ISGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESRHLFVSRNVLELTGVPASAFLGKT 507 Query: 497 FTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SC 553 +++ + ++ + Q E + R+ ++ Sbjct: 508 SRELGIDEELCRFWDEHIRRVFETGEPQAAEFHMNWRGRS-SHFDWRLFPERDESGEVQS 566 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 DI+ + + + F SHEI Sbjct: 567 VFSLSRDITRQRSLEKEY------ELLFHRMLDGF---ASHEI 600 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 39/354 (11%), Positives = 90/354 (25%), Gaps = 24/354 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143 D +S + + G A +G ++ + + HI + + Sbjct: 476 VMRFDRESRHLFVSRNVLELTGVPASAFLGKTSRELGIDEELCRFWDEHIRRVFETGEPQ 535 Query: 144 YGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + W ++ + P + E + ++R R+L K + Sbjct: 536 AAEFHMNWRGRSSHFDWRLF----PERDESGEVQ-----SVFSLSRDITRQRSLEKEYEL 586 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 F + + H + E P + ++ + D++ + Sbjct: 587 LFHRMLDGFASHEIICDEAGV------PVDYRFLRVNPAFERITDVTAADIVGRTLLEVF 640 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E E + + Y S + + + E + Sbjct: 641 PGTERYWIETYGKVALTGEPIHFEHYAAEQDKFFNVSAFRPAPGQFACIFSDITERVLTS 700 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V+ + + F AN S + T + G+ LL A L++ A Sbjct: 701 RALVEAKDLAESASRVKSEFLANMSHEIRTP------LNGIMGMLQLLRAGDLTEEQAEY 754 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ R + + L + P + + Sbjct: 755 AAYGIKASRRLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAAR 808 Score = 39.2 bits (90), Expect = 2.7, Method: Composition-based stats. Identities = 22/254 (8%), Positives = 55/254 (21%), Gaps = 32/254 (12%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 ++ + A ++G L +V ++ I+ + G+ + Sbjct: 612 RFLRVNPAFERITDVTAADIVGRTLLEVFPGTERYWIETYGKVA--------LTGEPIHF 663 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +++A +F+ I + Sbjct: 664 EHYAAEQDKFFNVSA--FRPAPGQFA-----CIFSDITERVLTSRALVEAKDLAESASRV 716 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 K + + + + L E+ + Sbjct: 717 KSEFLANMSHEIRTPLN-------------GIMGMLQLLRAGDLTEEQAEYAAYGIKASR 763 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 T L+ + ++ + LS A +G +L + D P Sbjct: 764 RLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLP 823 Query: 331 IPFFVYSHGNLFYA 344 F + Sbjct: 824 DRLFGDDT-RIQQV 836 >gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 597 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 28/373 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ NR+G IL TN + + + Sbjct: 252 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNGAETMAP-L 308 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + ++ + Q++E G T + L + + D++E + Sbjct: 309 PPQVKELFIRVVREEKEQSIELSLQGRT----WVILMTPLYSKTTVRGAVAVLRDMTEER 364 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + + E Sbjct: 365 RL--------------DKLRKDFVANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKE 408 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L +E V L + I Q A EK+I Sbjct: 409 MAKVIYDESLRIGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQID 468 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F N +I D ++Q+ N++ NAI T G + I + + V + V+D+G Sbjct: 469 LSAEFKNEDIQITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDG-VTIHVQDSG 527 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 528 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFT 587 Query: 806 IIFPLYDTSHPHD 818 P + PH+ Sbjct: 588 FYLP----NGPHE 596 >gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 576 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +++ Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A + I ++ + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 ASQAGLIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + K + + + G + S G + P+ Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 19/161 (11%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + V+TR K ++ +Q +I + + G+I N ++ GY Sbjct: 11 VDAQSRAEKIVETRRQKILLKTGALQ-DAIFNSAYFSSIATDEHGVIQIFNVGAERMLGY 69 Query: 488 PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGST 533 ED++ K + + L+ L+ + E Sbjct: 70 HSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYELTYIR 129 Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 K+ LS + + L S+ Y L D + KQE+ Sbjct: 130 KDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEEA 170 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +++ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + T + L S + + E E E Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427 Score = 45.0 bits (105), Expect = 0.057, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312 >gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586] Length = 1586 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 116/510 (22%), Positives = 199/510 (39%), Gaps = 34/510 (6%) Query: 330 PIPFFVYSHGNLFYANPSF--LLLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNAIKPVM 385 P F + HG+ F +F + I G A L D + + Sbjct: 586 PESTFAFEHGHSFRWQDAFKEADFLSLDVAGVLSIKGWRGNFWEKQAKLLLDAGLDQRFI 645 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + + R+ T L + I + Sbjct: 646 TIHNAQPQLPVLMRIAT------QILIVIAIMMVFVLMSVSIQYWLWLTSMVKQREEWNL 699 Query: 446 KMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++ + + ++LE++ + I++ GII N K+FGY +++ P Sbjct: 700 QLQNQKEKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYGRDELEGYPMHRLF 759 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMH 559 + S + Q +E + +E + I + +++ Sbjct: 760 LHDLESARAKHARWYELRPGNQRIE---IAVRSDETEFPVEISSSSVQMDDGLLISVSIR 816 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I++ + L A AE+ + KS FLA SHEIRTPL AI+G + ++ ++ Sbjct: 817 NITDRLAFEQTLKKALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL---- 872 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I SG +L IVND+LD+SKIE+ +M L P+ L E + E S+ A Sbjct: 873 TESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQA 932 Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---- 734 K + + ++P ++AD ++QI N+LSNA+ FT G I + Sbjct: 933 EAKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALRVEVIDKFSWN 991 Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V + DTG+G++ ++ KPF Q S R GTGLGL + ++ G Sbjct: 992 GAEKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEG 1051 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 K + S+ +G+ PL S D I Sbjct: 1052 KIGVESSEGQGSTFWAEMPLQTLSD-EDII 1080 Score = 41.6 bits (96), Expect = 0.61, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 2/141 (1%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G GFG + RV A ++ + + + + +++ I Sbjct: 93 RDIEREFPGALGFGFIR--RVPVAQEADFVAAARRDDFPNFTIRTLTPHDGDRFIIQYIY 150 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P+L+ E+ P LT+ + + L Sbjct: 151 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADSKPRRGVLILLPVYPS 210 Query: 289 FGTLQNNSKESFEYLSHRNHP 309 L+ ++ +L P Sbjct: 211 RMELKTPAEREKYFLGWAYAP 231 >gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus JW 200] Length = 456 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 173/370 (46%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L +IL++ +G+ + IL N A K+ +D++ + Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDLIGRHILEV 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S ++ ++ + K K+ + I+ + + + L + Sbjct: 161 VR---NSKLHDLFEDVKKNKNSSSRSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G + Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 259 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP+ + + + ID + ++ND+L +S+IE+ K E + LD + + + ++ Sbjct: 260 NPQTRDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKV 319 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I ++ I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 320 ARNKNITLKKDLNCTDLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G+G++ + + + F ++ S+ + GTGLGL + K +V++ G+ ++ S Sbjct: 379 IEVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 438 Query: 799 AKGTLIEIIF 808 +GT I F Sbjct: 439 GRGTKFIIKF 448 >gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum SV96] Length = 2035 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 118/780 (15%), Positives = 257/780 (32%), Gaps = 62/780 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDP-NNHIGDLLKRQNT 142 W +D + S+E+ + + G + LK + Sbjct: 1029 WEMDHVDNVLSWSDEIFRIF-EVDPEQFGATYEAFLNAVHPYDRAAVERAYTESLKSREP 1087 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + L +G Y + Y+ + + G V A Sbjct: 1088 YEIEHRLLMADGRVKY--VLERCETAYADDGKP--LNSLGTVQDITERKRMEAELISQTD 1143 Query: 203 ----KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDV 253 + + + +E+ + + ++ A D Sbjct: 1144 FQQTILNAVADAGMQVMMIEEGRIIHVGNRKLAYEFGFTDEDIDTHPALADIIHPDDRDR 1203 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSL 311 + + E S + T N + + + + + + Sbjct: 1204 IIDYHVRRMAGEAVSASYELGLVTRNGERREYETSVAIVPGTDPVRVITVGKDISERKRM 1263 Query: 312 SAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + ++ + + + + N + D + Sbjct: 1264 ETELLSQADFQKTIINAVCDVGMQLIVIENGRMIHFGNQLLARKFGFTDEDIDGYPSFID 1323 Query: 368 TLLDAPKLS------------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + L + + + L F Sbjct: 1324 FVHPDDRARVIGYHVSRMKGEAAPNNYELGLVAGNGERREYETSVAVVPDTDPVRLIAIF 1383 Query: 416 IPFEKANQFPENMP----QNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIIN 469 + + E + + ++ R+ +R ++ + L ++++ + + Sbjct: 1384 RDITERKRMEEALANREQELCALNASLELRVLERTEELRQQTRYLRTMIDTLPMFAWLKD 1443 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + L N+A++ + V++++ K + E+++ R+ +E+ Sbjct: 1444 TDSRFLVVNQALAAACSHNVDELVGKSDLDVWPREHAETYRADDAEVMATGQRKAVEEPF 1503 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + + DISE K + A AE+ + +S+ Sbjct: 1504 VDARDGAIWVETFKAPVVDEDGRVLGTVGVSRDISERKAVEAAREAALVEAERLARLRSE 1563 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+AR+SHE+RTPL I+G+S+++ + N R N + +SG +L ++ND+LD Sbjct: 1564 FMARMSHELRTPLNGILGYSQILLGENR---LNERQHVMVNVMQQSGEHLLSLINDILDF 1620 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 +KIE+GK L + L + +V + A +K++ A +P I AD +KQ Sbjct: 1621 AKIEAGKQELSLSDIHLPSFLHNLADIVSVKAEQKQLAFICDIAAAVPEGIRADDMRLKQ 1680 Query: 707 IALNILSNAIHFTPSGGQIIIST----------THTSNEEVILRVRDTGVGMTNYELEKA 756 + LN+LSNA+ ++ G QI + + ++D+G+G+ +LE Sbjct: 1681 VLLNLLSNAVKYSEQG-QISLRVTVLKKPFSEGAPVELGRLRFEIQDSGIGIEAGQLESI 1739 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814 KPF Q Q G GTGLGL +++ +V + ++ S +G+ P+ D + Sbjct: 1740 FKPFEQA-ADIQYSGGGTGLGLVISRELVRLMGSEIFVSSRVGEGSTFWFDLDAPVVDVN 1798 Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 51/508 (10%), Positives = 138/508 (27%), Gaps = 27/508 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAF---KMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143 D G +K ++ +L +G IG + ++ D I +++ Sbjct: 530 RYDRDGRIKYMNSQLHAALGLDEATARAAIGKKSTELYPDGDFDAYEQTIKSVIESGQ-V 588 Query: 144 YGKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201 + P G + + + A E G G + R + + Sbjct: 589 SELEVVLPDTGDGIRYHWVRMVAE--REPFGEVIGVLALGRDITETRALQQRQTQYFAMA 646 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 E + D + + + +L D + K Sbjct: 647 PGLFSTIEHRADGCYAMPFVSDGVRELFGLEPEEVMRDIGTLVARAHPDDIEMTFRKTEE 706 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + + + + Q ++ + + + Sbjct: 707 SERDLTPFHVEYRIIHPSNGLRWIEC-NSMPQRLPDGGTRWMGFYHDVTERKAIENALQD 765 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI----AGGLSTLLDAPKLSD 377 + + + + V S + N + + + +I+ A ++ L Sbjct: 766 SEQMLQEAQRIAHVGSWD-VDMVNDKLVWSDEIFRIWEIDKTKFKADFVAFLETVHPEDR 824 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + +R+ H + + + + + + + G + Sbjct: 825 DRVSQAYNEAVINRSLYEVE---HRLLFPDGRVKHVLERGEPQYDAQGKPVRFIGTSLDI 881 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++++ L L+ D + + + N+ GY +++L Sbjct: 882 TERKAIEKQL----ALLNYALDHVKDTVLLTGEDAHFYYVNKEACTTLGYSYDEMLGLGV 937 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCY-S 555 + ++ + +L + TK+ ++ + I Y Sbjct: 938 PNIDPVYQQDHWPDHWRDLKANG---SLTFESRHRTKDGRIFPVEINANYFEFDGQGYNL 994 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS 583 DISE KQ ++ L ++I + Sbjct: 995 ALARDISERKQMEDALRKNRQILTEAQR 1022 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 49/427 (11%), Positives = 117/427 (27%), Gaps = 43/427 (10%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------------RMKNKV 240 ++ + + L I G + + + + P P + + Sbjct: 221 EQSLQQGEGQPPELSVIDPGIAGSASDPSLFATNRPPSPFAVVVFQKRVDQDFLQAVERK 280 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + D + PL S + LP + + T G+ + Sbjct: 281 TGMWPLLFSPDGQHSRQMGPLNLSLQELLP-DLAKASAGIKAKTVSTGQGSFYAAALPWQ 339 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDK----------CPIPFFVYSHGN----LFYANP 346 +L A D +TV I ++ G + Sbjct: 340 FEQQPGFVLALVASQDSTLQNIRQTVAAILTVTSLILALSIGIGIFWVGRFIDPIIALTN 399 Query: 347 SFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + + ++ D + L + + + + Sbjct: 400 AVKAIGLVSRLERDRQSDYRLTAENLRPLAIQAPGEIGDLAWAFDVMIGELHHSFDSLEQ 459 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGI-----EPEDVDTRINKRKMEIEVMQLCS 456 ++ A+ + E+ Q E + G E + ++ + + + + S Sbjct: 460 RVEERTAELRALHQVLEEQNLQLEEQSFELGASNSSLLEEIGERKLIEDLLRLREQEFRS 519 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYL 513 + E + D IA +R+G I N + G + K T + Sbjct: 520 LAENSPDNIARYDRDGRIKYMNSQLHAALGLDEATARAAIGKKSTELYPDGDFDAYEQTI 579 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571 ++ LE + + + +R++ ++ PF DI+E + + + Sbjct: 580 KSVIESGQVSELEVVLPDTGDGIRYHWVRMVAEREPFGEVIGVLALGRDITETRALQQRQ 639 Query: 572 SHAKKIA 578 + +A Sbjct: 640 TQYFAMA 646 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 19/193 (9%), Positives = 56/193 (29%), Gaps = 7/193 (3%) Query: 36 TEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 TE+ + E + ++ + + T L + ++ I F W D Sbjct: 1387 TERKRMEEALANREQELCALNASLELRVLERTEELRQQTRYLRTMIDTLPMFAWLKDTDS 1446 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152 +++ L + +++G DV H + +++ + + Sbjct: 1447 RFLVVNQALAAACSHNVDELVGKSDLDVWPREHAETYRADDAEVMATGQRKAVEEPF--V 1504 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + + + ++ P+ + G G+ A + + L ++ Sbjct: 1505 DARDGAIWVETFKAPVVDEDGRVLGT--VGVSRDISERKAVEAAREAALVEAERLARLRS 1562 Query: 213 GHSSVEKEKYDIF 225 + + Sbjct: 1563 EFMARMSHELRTP 1575 >gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP 101886] Length = 808 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 100/431 (23%), Positives = 189/431 (43%), Gaps = 20/431 (4%) Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 V++ R +A + + T ++ + Q E ++ + Sbjct: 257 AVVITRRLGNKMAWPIVALAREVKEGHYPINTLQADKEIATLADAFNQATQEINRINEQN 316 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 K + Q+ +I++ D I I+ G I + N A LFGY +++ + + + Sbjct: 317 IKEERLSGQSQVQAIVDTVVDSIITIDAHGYIATFNPAAEGLFGYRATEVIGQKINILMP 376 Query: 503 QNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTM 558 S + YL ++ + + + +G K+ + L + ++ + ++ + Sbjct: 377 PPFASEHDSYLENFMNGKQAKIIGIGREVVGMRKDGSIFPAELSVSEMRVSGNPMFTGII 436 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ K+++ + K++F+A VSHE+RTPLT+I G +I + G L Sbjct: 437 RDITSRKKDE--------------AMKNEFVATVSHELRTPLTSIRGALGIILGKFSGEL 482 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + R+ + ++ND+LDI K+ESG M HF +L ++ +I Y Sbjct: 483 PDKTQK-MLTLALRNCERLTLLINDILDIEKLESGAMLYHFNRCNLYSIIARSIEDNTGY 541 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A +I + I AD ++Q+ N+LSNAI ++ SGG++ ++ + Sbjct: 542 AKHHQITVTFESDTETAYINADSTRMQQVMANLLSNAIKYSKSGGEVNVTLE-NNGSSFR 600 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + D G G+ E F Q +S R GTGLGL +AK++++A+ G+ + FS P Sbjct: 601 VEITDHGAGIPPEFHEHLFTRFSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLHFFSVP 660 Query: 799 AKGTLIEIIFP 809 +G P Sbjct: 661 KQGATFFFTVP 671 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 25 LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD---SENTFVFDPIPR 81 L+++ + + + + + N Q ++ N + S + V + Sbjct: 275 LAREVKEGHYPINTLQADKEIATLADAFNQATQEINRINEQNIKEERLSGQSQVQAIVDT 334 Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 V IDAHGY+ + G A ++IG ++ + ++ + Sbjct: 335 VVDSIITIDAHGYIATFNPAAEGLFGYRATEVIGQKINILMPPPFASEHDSYLENFMNGK 394 Query: 142 TWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRA 195 + +G+ P +L+ + SG F GI+ A Sbjct: 395 QAKIIGIGREVVGMRKDGSIF--PAELSVSEMR-----VSGNPMFTGIIRDITSRKKDEA 447 >gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter segnis ATCC 21756] Length = 843 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 136/664 (20%), Positives = 245/664 (36%), Gaps = 55/664 (8%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 R+ +P + +G + P R + + Sbjct: 191 ARLIEEPARGESSALALPDGTLIVAQGGRAQGATAVRQAFALKPADLRRPADDLRG---- 246 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + K + E +L + L + L Sbjct: 247 ---RASDGKPLDVAVKPVGEGALTAVFAAPSSGDGGVPTSSALSLLIPLAAGIGLALLLV 303 Query: 307 NHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 S E V+ + + +T Sbjct: 304 VQSRKSEAAQREFIDSEQRFRLAVEAARCGIWEWDLNADEVF---LSDVTGAMFGWGGGG 360 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 LLD ++ + + S R+ + + + Sbjct: 361 VVSGQDLLDRIAPDHRERLRKALANAALYGAFDVSFRVPAVGQGQRSLWIDARGQGFGRA 420 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 G+ + + R+ + + + +L +E+ S+ + +R G +L NR Sbjct: 421 DADGYSRIIGVALDVTEERVAQARAQAAENRLRDAIESVSEAFVLWDRHGRLLMCNRNYR 480 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +F + + KP E N + + + E + + + + + Sbjct: 481 NVFSLDPKLL--KPGAARAEINRRAALAIKQDHSAPDAAKGVREAELM----DGRWIQIS 534 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--------------------- 581 ++ +T DI+ K + ++ + Sbjct: 535 ---ERRTAEGGLVMTAADITAIKNQDEARRLNQEQLQNAVAGLERSQEQLAELARKYETE 591 Query: 582 -------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY Y+ I SG Sbjct: 592 KVRAEGANRAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSG 651 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD+SKIE+GKMNL FEP+ +++ +A+ LV+ A + +R F + Sbjct: 652 QHLLALINDILDMSKIEAGKMNLKFEPMHVEDVAEDAVRLVRNRAEAAGLNLRIDFPP-L 710 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNY 751 P I AD R++KQ+ LN+LSNAI FTP G + ++ + + V + V DTG+G+ Sbjct: 711 PEIEADYRAIKQVLLNLLSNAIKFTPRAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKE 770 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +L + +PF Q+ + +GTGLGL L K+++ + G + STP +GT + P+ Sbjct: 771 DLARLARPFEQVESQFSKTTQGTGLGLALTKSLISMHDGALEMTSTPGEGTTVSFALPIR 830 Query: 812 DTSH 815 + H Sbjct: 831 QSEH 834 >gi|240139110|ref|YP_002963585.1| putative histidine kinase with HK Homodimeric domain, ATPase domain and a sensory PAS domain [Methylobacterium extorquens AM1] gi|240009082|gb|ACS40308.1| putative histidine kinase with HK Homodimeric domain, ATPase domain and a sensory PAS domain [Methylobacterium extorquens AM1] Length = 843 Score = 347 bits (890), Expect = 5e-93, Method: Composition-based stats. Identities = 175/783 (22%), Positives = 306/783 (39%), Gaps = 81/783 (10%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 F++ +K + P DS + + S + + E +R W DA G Sbjct: 137 FDSGPAKADPPPADSGPDVAKPEASFPSPVPSPVPEVETA------ELPLRVIWRSDADG 190 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 L +S P A + G ++ I+ + + L + T+ L + Sbjct: 191 VLTHVSRTHPDL----AEALSGRSWAMLAADGVIEGA-ALTEALAGRRTFRTLPLL--VR 243 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G ++++ P +FSGF GF I+ + + Sbjct: 244 GRAYEHALEISGAPAGRSTDDFSGFGGFAIL-------------------GERRARVMES 284 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 E++ + +++P ++ +S + + ++ + + P Sbjct: 285 AVEDEEDGLENLQEEAPVDETEAESGLSVNEHAAFREVARVLGLRFAPDEDGDDAAPPPA 344 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + LS E ++ P+ Sbjct: 345 RPESAP------------------SGSVMPFPIPQGRLSEAETRARLALTELLESLPLGV 386 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 VY + +A+ +FL LT Y + + A GL+ L D I PV R + Sbjct: 387 LVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREIIGPVPFARPEGGT 445 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +A + W + A ++ + Sbjct: 446 VALLVDRAGLVWEGAQAEICLARAMPAAGDI---------------------QLPANAAR 484 Query: 454 LCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 L + +L++ DG+ ++ EG ++ N + ++L ++++ F + S + Sbjct: 485 LRAEKVLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFASESLSALET 544 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK---QEK 568 +T+ + L LRI + Y ++ +I + Sbjct: 545 AVTDSRRSGTSKVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDEDVAPPAP 601 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + E E K++ LARVS EIR L AI+G ++++ + RF R Y Sbjct: 602 VAEPVRRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAERLEAYLR 661 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 + SG + +++DLLD+++I++G+ L F ++L+E V+ I+ Q A RI++RT Sbjct: 662 EVRLSGGRIAALIDDLLDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARDRIVLRT 721 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 S A N+P + AD RS++Q AL +L NAI T +GGQ+I+STT EV LRVRDTG GM Sbjct: 722 SLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGM 781 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 T EL A++PFG G+ G GL L KA+V+AN G+F I S +GTL+E++F Sbjct: 782 TEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGTLVEMLF 840 Query: 809 PLY 811 P Sbjct: 841 PAA 843 >gi|295687501|ref|YP_003591194.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] gi|295429404|gb|ADG08576.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC 21756] Length = 910 Score = 347 bits (890), Expect = 6e-93, Method: Composition-based stats. Identities = 125/742 (16%), Positives = 244/742 (32%), Gaps = 49/742 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + G ++ G A +++G L+ + + Sbjct: 41 VSPEGRFARVNAAWTTLTGWSADELVGHPTIKFIHPDSHAELIDSSRRLRETGSAINEVR 100 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G +V + R+R G++H + + RA + + L Sbjct: 101 VLCKDGR--WVW-------LQGRSRLGPHGEMIGLMHDISGEVEARAQLEAARRTHEMLA 151 Query: 209 EIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + D L + + + + Sbjct: 152 EAAGIGIWSYEPADARIDWTPDAVAALGLTPAEIATPELFFARIAPEQRGKVAEAFSRAV 211 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGEN 320 ++ ++ + L + + E Sbjct: 212 QTGEGGSMEYRLRGHHGRWLTFRSTYRAEPRPGGLHALKGISQNITDVARSRDKAIWSER 271 Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA-----GGLSTLLDAPK 374 V+ P VY L +P FL + K D I + G Sbjct: 272 RARRLVEDAPFAVGVYDVDLRLRLVSPKFLEIFKATEADVIGRSLQELTNGSRRRFV--- 328 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 A+ ++ R + + A H ++W + E + Sbjct: 329 AGVARALSGEIVTRREDRLLDAEGDEHCLRWEARPW----------RDVNGEIVGVITYM 378 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDIL 493 + +R+ I +L L A G+ I+ E + ++ G + + Sbjct: 379 DDVTALAAARREARINARRLKVALGAARAGVYEIDHERASFWGSPEFHRMVGRRVGYEDV 438 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 R+ + + E L + E E + +R+ + SS Sbjct: 439 REAIWPMIHPEDRKKLYAAAAEWRRLGDQGAHEYDVRLCPSEGETRWIRVFHEARRDSSG 498 Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DI E K+ + L A++ A+ S K+ FLA +SHEIRTP+ ++G V Sbjct: 499 RPRKAFGLVLDIDEHKRAELALMAAERAAQAASEAKAQFLANMSHEIRTPMNGVLGVLHV 558 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K + L + + +G ++ +++D++DIS+IE+G++ L+ E V E Sbjct: 559 LKRE----LPSGENADLLGEALAAGQMLSTLLDDVIDISRIEAGRLELNHEAVDPAELAR 614 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + L+ A+EK + + A N+ I D V+Q N++ NA+ FT G + + Sbjct: 615 GVVRLLAGPASEKGLSLDLDIAQNLGWIQTDATRVRQALFNLIGNAVKFTVKGS-VTVRV 673 Query: 730 TH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + ++ V DTGVG+ E+ + F Q S R G+GLGL +++ + Sbjct: 674 RRLGAADAQRLVFDVVDTGVGVPLAAQERLFERFQQADASTTRRFGGSGLGLAISRNLAR 733 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 G + S P +G+ + Sbjct: 734 MLGGDITLRSKPGEGSTFSLTI 755 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E + + SD +++ EG N A + L G+ ++++ P F+ ++ + Sbjct: 23 EAEAARW--FFDNASDLFTVVSPEGRFARVNAAWTTLTGWSADELVGHPTIKFIHPDSHA 80 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 + + K+ + + L+ +L MHDIS + Sbjct: 81 ELIDSSRRLRETGSAIN---EVRVLCKDGRWVWLQGR-SRLGPHGEMIGLMHDISGEVEA 136 Query: 568 KNKLSHAKKIAEKESSH 584 + +L A++ E + Sbjct: 137 RAQLEAARRTHEMLAEA 153 >gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein [Synechococcus sp. PCC 7002] Length = 1076 Score = 347 bits (890), Expect = 6e-93, Method: Composition-based stats. Identities = 102/568 (17%), Positives = 196/568 (34%), Gaps = 29/568 (5%) Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDE 317 + + E + + + + ++ + + + + F+E Sbjct: 219 QHIASHGEIPFCNEVRYRHRDGSTVWVLCSGKVIEWDAQGQPLRIIGSHIDLTPYKRFEE 278 Query: 318 GENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + ++ + + S G L +P L + L+ Sbjct: 279 RLKRSEASLQEAQRLAHIGSWEVDLATGRLS-WSPELLRMFGLNMAQGPPTYDEHWALIH 337 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + A+L + + + + Sbjct: 338 PDDQERLKRCVETAMRTGESYMVQYRAQLTN-----GQIFYHEARGSSQKDASGKTIRFF 392 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + + + ++ + ++ LE + DG+ N + + +R + GY + Sbjct: 393 GTALDITERVLAEQALRESELRWQFALEGSGDGVWDWNAQTNRVFFSRQWKAMLGYSEAE 452 Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----II 544 I + + + ++ + L + K+ + I Sbjct: 453 IGDTLMEWESRVHPDDLAMTYQAIQAHL-DGQTEIYRSEHRVRCKDGSYKWILDRGKVIE 511 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 T DI + KQ + L AK+ AE + KS FLA +SHEIRTP+ II Sbjct: 512 WTPSGEPLRIIGTHSDIGDRKQAELALIDAKEAAEAAAHAKSMFLATMSHEIRTPMNGII 571 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++ + E+A+ S +L ++ND+LD SK+E+GK+ L L Sbjct: 572 GMLNLLL---YSEGLTTEQQEHAHIALSSAESLLMLLNDILDFSKMEAGKLQLETVDFDL 628 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + L+ A EK + + I D ++QI N++SNAI FT G Sbjct: 629 HQFFENFAKLMAFAAQEKGLNLIFDLRGLRHGSIQGDPGRLRQILTNLVSNAIKFTNQG- 687 Query: 724 QIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +++I + V DTG+G+ +L +PF Q+ R GTGLGL + Sbjct: 688 EVMIRCQTERVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAI 747 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + G + STP +G+ Sbjct: 748 TQRLCQVMGGTIEVISTPGEGSCFTFTL 775 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 27/293 (9%), Positives = 81/293 (27%), Gaps = 14/293 (4%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 P + +L + V P + L A+ + + + Sbjct: 2 SAARPLRFLTPEIIASLLHQPVIVSPDLSLIALSDRLC-ADLQLVGVLVMADEQLLGTVS 60 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA----RLHTIQWNRENSLAMTFIPFEK 420 L + + + + +A + + +T + + Sbjct: 61 PGDILRAIAQGENPQTATAAEIMQRPAPTYPVAALDQIESLCQYFAEQQLAWLTLVDEQG 120 Query: 421 ANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + +D E+ ILE G + I + Sbjct: 121 RPVGILPGDRLAELRQHLDPEPAAAPEYSHHELKFFEEILENAFAGYWDWDCINNIEYLS 180 Query: 479 RAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + ++FGY ++ +P + + +NH L + ++ ++ Sbjct: 181 PSFKRMFGYADHELPNRPESWQKLIFPEDLQKVNHNLQQHIASHGEIPFCNEVRYRHRDG 240 Query: 537 KLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + K + + + + D++ +K+ + +L ++ ++ Sbjct: 241 STVWVLCSGKVIEWDAQGQPLRIIGSHIDLTPYKRFEERLKRSEASLQEAQRL 293 Score = 44.2 bits (103), Expect = 0.085, Method: Composition-based stats. Identities = 26/247 (10%), Positives = 57/247 (23%), Gaps = 21/247 (8%) Query: 87 WNID-AHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNH-IGDLLKRQN 141 W +D A G L S EL + G + + + + ++ Sbjct: 299 WEVDLATGRL-SWSPELLRMFGLNMAQGPPTYDEHWA-LIHPDDQERLKRCVETAMRTGE 356 Query: 142 TWYGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 ++ + + T + + + R FG + Sbjct: 357 SY---MVQYRAQLTNGQIFYHEARGSSQKDASGK--TIRFFGTALDITERVLAEQALRES 411 Query: 201 D-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----EYYAHKDDVLK 255 + + L G + +F + L T E H DD+ Sbjct: 412 ELRWQFALEGSGDGVWDWNAQTNRVFFSRQWKAMLGYSEAEIGDTLMEWESRVHPDDLAM 471 Query: 256 T--EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLS 312 T L + + + + ++ S E + + Sbjct: 472 TYQAIQAHLDGQTEIYRSEHRVRCKDGSYKWILDRGKVIEWTPSGEPLRIIGTHSDIGDR 531 Query: 313 AYFDEGE 319 + Sbjct: 532 KQAELAL 538 >gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1310 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 166/389 (42%), Gaps = 35/389 (8%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + S+ E T D + I+ I+ N A YP ++ L + + Sbjct: 392 ESEERFRSMFEITPDPVWIL-MNQKIVECNNAAINTLHYPAKEALLGLEMCDISPEKQTT 450 Query: 509 MNHYLTEILSLDLRQTL----EKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDIS 562 + + S + TL + + + + + I ++ D++ Sbjct: 451 GMLSSSSLNSHFEQVTLSGNTRTEWVFQRYDGEPIYADMTILSIAFNNHPATIISWRDVT 510 Query: 563 EWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 E + +L AK+ AE + KS+FLA +SHEIRTP+ +II Sbjct: 511 ERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAENANQAKSEFLANMSHEIRTPMNSII 570 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S + N + Y + S +L+I+ND+LD SKIE+ KM++ P L Sbjct: 571 GMSSLALQTPL----NDKQRGYIEKVSHSAESLLNIINDILDFSKIEARKMDIENVPFML 626 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 + + +++L EK + + +P+ ++ D ++QI LN+ +NA+ FT G Sbjct: 627 PSLIHKVAHVLELKIEEKGLELIIDIDAEVPQQVVGDPTRLRQILLNLGNNAVKFTQQG- 685 Query: 724 QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +III H+ N + + V+DTG+G++ + + F Q S R GTGLGL Sbjct: 686 EIIIRAAHSKNNQDDNIIHFSVQDTGIGISKDKQNNLFQSFSQADTSTTRRFGGTGLGLA 745 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++K ++ G ++ S KG+ Sbjct: 746 ISKRLIQLMGGDIWVESEENKGSTFHFTI 774 Score = 41.9 bits (97), Expect = 0.48, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 44/170 (25%), Gaps = 18/170 (10%) Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 + R + F E E + P P ++ + + N + + Y + + + Sbjct: 376 AWAISRKVTRQLSGFIESEERFRSMFEITPDPVWILMNQKIVECNNAAINTLHYPAKEAL 435 Query: 361 EIAGGLS----------------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N + R D I A + +I Sbjct: 436 LGLEMCDISPEKQTTGMLSSSSLNSHFEQVTLSGNTRTEWVFQRYDGEPIYADMTILSIA 495 Query: 405 WNRENSLAMTFIPFEKA--NQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 +N + +++ + +Q + +E + + + Sbjct: 496 FNNHPATIISWRDVTERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAE 545 >gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571] gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571] Length = 763 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 141/691 (20%), Positives = 266/691 (38%), Gaps = 72/691 (10%) Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 LAALP + + G R + RV R+ + + E+ Sbjct: 103 LAALPPRATSG---GRRIYVTDPSGRVIAAAPESAPRVTSLADLMDPSQPLTVFAERAGV 159 Query: 223 DIFSQQSPPPHLRMKNKVSSLTE-YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + ++N L + Y + T + Sbjct: 160 LEIAVGDTQMLATVRNLNPPLGQIVYLQPMNRALAVWSDSTTLTITLF------------ 207 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 G + SF + + R + Y D +++ + + Sbjct: 208 -----ATTGAVLLILGFSFHWQASRAREADHIY-DTVRMRIDTALNRGRCGMWDWDMARG 261 Query: 342 F-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 Y + + + + D++ G ++ L D+ + + ++R + R+ Sbjct: 262 RMYWSDTMFEILGLERRDELLSFGEIAKL----VHPDDGNLYELAQELAERPGASVD-RV 316 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ R + + + + GI + + + + M+L +E+ Sbjct: 317 FRMRTARGDFVWLRMRAEVVQQAGEDGPHLIGIAMDVTEAQRLAERTVTADMRLRDAIES 376 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519 S+ + + + ++ N L P + I+ PF V L Sbjct: 377 ISEAFVLWDSQNRLVLCNSKFQTLHELPDDAIVAGTPFETIATVGRHPVTRTPL---KPE 433 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 D + + + L + ++ Y DI+ K+ + +L +K Sbjct: 434 DKPEEGSRAFEAQLSNGRWLKI---AERRTKDGGYVSVGTDITPLKRHEERLMDNEKRLM 490 Query: 580 K-----------------------------------ESSHKSDFLARVSHEIRTPLTAII 604 + KS+FLA +SHE+RTPL AII Sbjct: 491 ALVADLRKSQQTLEHQAQQLAELAEKYSEEKTRAEDANRAKSEFLANMSHELRTPLNAII 550 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++++ FGPLG+ +Y EY + I SG +LD++ND+LD+SKIE+G+M L E + L Sbjct: 551 GFSEIMESGMFGPLGSDKYREYCSDIKGSGTYLLDVINDILDMSKIEAGRMQLELEDIRL 610 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 DE +++A+ + + +EK++ + + D R++KQI LN+LSNA+ FTP GG Sbjct: 611 DEIIADAMRVTAVKGDEKQLDMTAQVGAGQ-VMRGDRRALKQILLNLLSNAVKFTPEGGH 669 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + ++ + DTG+G+ + L K +PF Q+ + +G+GLGL +AK++ Sbjct: 670 VAVRAKVN-GGAAVIAIEDTGIGIPRHALNKIGRPFEQVESQFTKTHKGSGLGLAIAKSL 728 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + G I ST GT + + P++ H Sbjct: 729 AELHGGSMRIRSTEGAGTTVVVRLPIHGVPH 759 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 48/406 (11%), Positives = 112/406 (27%), Gaps = 35/406 (8%) Query: 84 RFTWNIDAHGYLKEISEE-------LPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGD 135 R + D G + + E L + + + + +L I + + Sbjct: 115 RRIYVTDPSGRVIAAAPESAPRVTSLADLMDPSQPLTV---FAERAGVLEIAVGDTQMLA 171 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGI-VHVNRVDND 192 ++ N G+ L V D L I ++ GF +R Sbjct: 172 TVRNLNPPLGQIVYLQPMNRALAVWSDSTTLTITLFATTGAVLLILGFSFHWQASRAREA 231 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYY 247 + + L+ + G + + ++ + L ++ + L + Sbjct: 232 DHIYDTVRMRIDTALNRGRCGMWDWDMARGRMYWSDTMFEILGLERRDELLSFGEIAKLV 291 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 D L L +S+ T + + +Q ++ + Sbjct: 292 HPDDGNLYELAQELAERPGASVDRVFRMRTARGDFVWLRMRAEVVQQAGEDGPHLIGIAM 351 Query: 308 HPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 + + E + + ++ F ++ L N F L + + Sbjct: 352 DVTEAQRLAERTVTADMRLRDAIESISEAFVLWDSQNRLVLCNSKFQTLHELPDDAIVAG 411 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---------NRENSLAM 413 + +KP + + A A+L +W + Sbjct: 412 TPFETIATVGRHPVTRTPLKPED--KPEEGSRAFEAQLSNGRWLKIAERRTKDGGYVSVG 469 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 T I K ++ + + D R +++ +E + QL + E Sbjct: 470 TDITPLKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAE 515 >gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 587 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 171/367 (46%), Gaps = 24/367 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ +L +L + G+ I+ + I+ N AV KL G +I+ K + +E Sbjct: 242 EISENQQRLAGVLTNMTSGVIFISEQRRIMLVNPAVEKLLGTAGHEIVGK---LHIEAGK 298 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISE 563 ++ Y+ L D + + +E++L + S + +HDI++ Sbjct: 299 SFGLSQYIDRCL--DRSEKFRQEVHIYYPQERILDVNFAPYINFKGESRGVVVVLHDITD 356 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + +S+F+A VSHE+RTP+T+I GF+E + Sbjct: 357 IRRLE--------------KMRSEFVANVSHELRTPITSIKGFTETLLEGAMQ--DEETC 400 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I + ++ D+LD+SKIE ++ LH V L + +S A++++ A K Sbjct: 401 RNFLQIISDESERLYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKE 460 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + I ++ D ++QI LN+L+NAI +T GG+I I T +E + ++V D Sbjct: 461 LTITLPSPKPDIWLMTDKDCLQQIILNLLTNAIAYTQEGGKISIKTE-ADSENITIQVMD 519 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ EL + + F ++ ++ GTGLGL + K +V+ G + S +GT Sbjct: 520 TGIGIPEKELTRIFERFYRVDKARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTT 579 Query: 804 IEIIFPL 810 + PL Sbjct: 580 FTVTLPL 586 >gi|146280453|ref|YP_001170606.1| hypothetical protein PST_0056 [Pseudomonas stutzeri A1501] gi|145568658|gb|ABP77764.1| conserved hypothetical protein [Pseudomonas stutzeri A1501] Length = 1012 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 110/594 (18%), Positives = 219/594 (36%), Gaps = 37/594 (6%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 P +++ +L + L L S + + Sbjct: 442 EPQRLLEDAAQALVHVHPQDLPRLHRALLRL-AVHPGSGAVEFRIQHPQRGLLWAEGRAS 500 Query: 291 TLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYA 344 + + + E+ V P + + + Y Sbjct: 501 AERLADGTVLWHGFVTEITELMEATRALQKSESRFRAMVGNLPGVVYRCRNDGRRRMSYL 560 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + LT Y + D + L P P + R++ I Sbjct: 561 SEGIERLTGYPASDFVGDRVRSYGSLIHPDDQAQAEQSPA--------QDSFE-RIYRIT 611 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 ++ + + +G + D + K++ME L +++ D Sbjct: 612 NAEGRTVYVREKARVLRERDDPVGWCDGFIWDVTDQALAKQEMEERERYLSMLIDNVIDA 671 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I II+ GII + N A ++FGY ++++ + ++ + + S + YL + Sbjct: 672 IIIIDGRGIIETFNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRA 731 Query: 525 LE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 LE + + + ++ + + ++ + + DI+E K+ + Sbjct: 732 LEQNRELTALRRNGETFTIELRVSQISHHGERRFIGLVRDITERKRIE------------ 779 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 KS+ ++ VSHE+RTPLT+I G +I G +P ++ ++ + + Sbjct: 780 --RMKSELVSIVSHELRTPLTSISGALGLIVGGALGE-PSPTMLQMLTIAHQNSLRLGRL 836 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 V+DLLD+ K+ +GKM L SL + A Q YA + + ++ + +++AD Sbjct: 837 VDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPLPTL-QLIAD 895 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ N++SNA+ F+P GG + + V + VRD G G+ + + F Sbjct: 896 DDRLQQVLANLISNAVKFSPEGGTVSLGAQQR-GAWVRIWVRDQGPGIAPEFHARIFQKF 954 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q +S + GTGLGL ++K +++ G+ S P G PL + Sbjct: 955 SQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELPLAPAA 1008 Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats. Identities = 24/270 (8%), Positives = 61/270 (22%), Gaps = 20/270 (7%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGY--LKEISEELPKTIGNYAFKMIG---MRLCDVSDI 124 SE+ F + G + +SE + + G A +G + Sbjct: 531 SESRFRAMVGNLPG-VVYRCRNDGRRRMSYLSEGIERLTGYPASDFVGDRVRSYGSLIHP 589 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + + V + A + R+ GF + Sbjct: 590 DDQ------AQAEQSPAQDSFERIYRITNAEGRTVYVREKARVLRERDDPVGWCDGF--I 641 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS 242 + + ++ S L + + + I + + ++V Sbjct: 642 WDVTDQALAKQEMEERERYLSMLIDNVIDAIIIIDGRGIIETFNHAAEQIFGYRSDEVIG 701 Query: 243 LTEYYAHKDDVLKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + L +L + + + N T Q + Sbjct: 702 RNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRRNGETFTIELRVSQISHHG 761 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++ + + ++ V Sbjct: 762 ERRFIGLVRDITERKRIERMKSELVSIVSH 791 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPI 152 + + G + ++IG L + ++ D R+ T + T Sbjct: 684 FNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRR 743 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G + + ++ + + R G+V + L SH Sbjct: 744 NGETFTIELRVSQISHHGERRFI------GLVRDITERKRIERMKSELVSIVSHELRTPL 797 Query: 213 GHSSVEKEKYDIFSQQSPPP 232 S + P P Sbjct: 798 TSISGALGLIVGGALGEPSP 817 Score = 37.7 bits (86), Expect = 8.1, Method: Composition-based stats. Identities = 24/274 (8%), Positives = 71/274 (25%), Gaps = 11/274 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKV 240 + A + ++ + + S++ + + P M+ Sbjct: 88 RQADMVATALAGNAEVLRQMRLIDAALRDGRSLDDPRLERSRQRLRAALTPAWRSMQRHQ 147 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + + + V ++ ++ + + +Q+ + S Sbjct: 148 ALQLQLFWGDAGVTVLRMQQSERFGDTQAAQRPMLQRVL--RDGIEQFGLEVDALGASSR 205 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 + R + + + + P + G N L ++ + Sbjct: 206 AIVPLRAVDRQDSEVIGALEVGYNVLPELPDLSAQLAAGLALIVNREALQASQTTPPSGV 265 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 +++ G LL +A + + ++ S + + S + IP Sbjct: 266 QLSEGSDWLLIGH-----SATQVLHWAQAGVLPEPGSGKGSRLLDADGRSYILNQIPLHD 320 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 Q + P D + + +L Sbjct: 321 EQQAEPSTPPLAAALAWRDISAMQGEHLQAERRL 354 >gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM 7299] Length = 1420 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 109/503 (21%), Positives = 209/503 (41%), Gaps = 26/503 (5%) Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + +D + GNL + SF Y + + E+ + Sbjct: 454 EQYLSEKKYKDLLDYASDAIHILDKEGNLIEFSQSFAQSLGYTNEEMWELNIVDWDIFI- 512 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 V + +S + + + N Sbjct: 513 -------LEVEVKNRIKELIDFPSSFEAKHKRKDGSIIDVQINAKGIEINGEE---YLYA 562 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + ++++ E + +I++ + IA+I+ G ++ N+ GY E+I Sbjct: 563 SQRDITKQKKLEKEILSEKDFISTIIDNANAIIAVIDSMGRMIKINKYAQDFVGYAEEEI 622 Query: 493 LRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +P+ FL ++ + + + ++ + + + EEK+ ++ + Sbjct: 623 ASEPYFWSRFLPKDKKQKVLEIVKKANKGEIVKNFKNSWISKDGEEKVFEWSNMLVQKDD 682 Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + + D++E + +L AKK AEK + KS+FLA +SHEIRTP++ + G Sbjct: 683 GSMNYIATIGIDVTENHELLEELKGAKKNAEKANVVKSEFLANMSHEIRTPISGVTGLIS 742 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +I + PL +Y N +S N +L I+ND+LD SKIE+GK+++ + SL+E Sbjct: 743 LILDMPLEPL----QRDYLNKAKKSSNALLSIINDILDYSKIEAGKLDIIEQDFSLEEIF 798 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +L +K++ NIP I+ D + QI N++ NAI FT G + + Sbjct: 799 KNISNLFGYETYKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGNAIKFT-ENGYVAL 857 Query: 728 STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + E + + DTG+G++ +K F Q+ S + + G+GLGL + K Sbjct: 858 KSEIKEINEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKYSGSGLGLSITKQ 917 Query: 784 MVDANMGKFYIFSTPAKGTLIEI 806 +++ GK ++ S KG+ Sbjct: 918 LIELMHGKIWLESEEGKGSKFYF 940 >gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1169 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 222/617 (35%), Gaps = 44/617 (7%) Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 P + +++ L + A PL+ +++ +++ Sbjct: 55 PWDIIISDDRLPGLDDPKALARMRRGWPDVPLIVLLDAA--DEDIGVRAMKAGANDYILK 112 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348 G L L N + +D V G + N Sbjct: 113 GHLARLGVLVERELQEANRRRQTLVTKVQ---FRALLDSVQDAIMVVDEHGRIQVYNQGA 169 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNR 407 + Y + + G+ LL + D R ++ R Sbjct: 170 EAIFGYAMREMLGQ--GIGFLLPGDGYERLKCNPVQLKSPGDLTGTQVYERRYVVVEGRR 227 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + +T + I + + + + + + ++++ S I Sbjct: 228 HDGRMLTLEASSSCASVFGSRTYTFILRDITEQQQAEAALRESERRYRELVQSASSAIIR 287 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS---VMNHYLTEILSLDLRQT 524 R+G + N + FG+ E+++ K L + S + + +L+ Sbjct: 288 WTRDGTLTFFNEYAERFFGWSAEEVVGKCRIDILVPDQTSTGTDLRGLIENLLAHPEDYR 347 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN----------- 569 I ++ + + + + + + D++ Q + Sbjct: 348 SN-INENVCRDGRRVWMSWTNQAIRDAHGAVSEILSVGSDVTARLQAEEAVRRLNADLEQ 406 Query: 570 -------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 +L A++ A + + +S+FLA +SHEIRTP+ A++G + +++ Q P Sbjct: 407 RVTERTAELRAAREQALRLAQARSEFLANMSHEIRTPMNAVLGLAYLLERQENLP---EE 463 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + A I SG +L I+ND+LD+SKIESGK+ + L + + +++ A K Sbjct: 464 ACDLARKIYHSGQSLLGIINDILDVSKIESGKILIEQTRFQLSQVLDNLATIMTTAARGK 523 Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737 + + + +L D + QI +N+ +NAI FT SG + + T + + Sbjct: 524 DLALAIVPPRDCDWPLLGDPLRLGQILINLTNNAIKFTDSG-VVEVRITPVESSASNLVM 582 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 VRDTG+G+ + +PF Q S R G+GLGL +++ +V+ G+ + S Sbjct: 583 RFTVRDTGIGIDAETQARLFQPFMQADASTTRRFGGSGLGLMISRQLVELMGGRLGVESA 642 Query: 798 PAKGTLIEIIFPLYDTS 814 P G+ PL T Sbjct: 643 PGVGSTFWFEVPLGRTE 659 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 33/327 (10%), Positives = 79/327 (24%), Gaps = 29/327 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D HG ++ ++ G +M+G + + + LK G Sbjct: 156 VDEHGRIQVYNQGAEAIFGYAMREMLGQGIGFLLPGDGYERLKCNPVQLKSPGDLTGTQV 215 Query: 149 L---------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 +G L + + ++ +R ++ I+ A + Sbjct: 216 YERRYVVVEGRRHDGRMLTLEASSSCASVFG-SRTYT-----FILRDITEQQQAEAALRE 269 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKT 256 ++++ L + + + V D Sbjct: 270 SERRYRELVQSASSAIIRWTRDGTLTFFNEYAERFFGWSAEEVVGKCRIDILVPDQTSTG 329 Query: 257 EKYPLLTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 L + PE + + +++ E LS + + Sbjct: 330 TDLRGLIENLLAHPEDYRSNINENVCRDGRRVWMSWTNQAIRDAHGAVSEILSVGSDVTA 389 Query: 312 SAYFDEGENLTPETVDK------CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 +E +++ + L A FL ++ + G Sbjct: 390 RLQAEEAVRRLNADLEQRVTERTAELRAAREQALRLAQARSEFLANMSHEIRTPMNAVLG 449 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRT 392 L+ LL+ + A Sbjct: 450 LAYLLERQENLPEEACDLARKIYHSGQ 476 >gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response regulator subunits [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 914 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 117/561 (20%), Positives = 226/561 (40%), Gaps = 20/561 (3%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L + S ++ + T + +++ YLS + + S + Sbjct: 199 LNQGQIPSFQIKKRYITKSKESIWTILNKSIIRDTLGNPLYYLSQILNMTDSIQSEMELR 258 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPS-FLLLTK--YKSVDDIEIAGGLSTLLDAPKLSD 377 +D+ + N + + +TK ++ +D + S Sbjct: 259 SISRLLDQMANLAKIGGWDLDLKTNQANWTNITKRIHEVEEDYIPNVENGLSFYHSEESR 318 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 N V S+ + T + N + + + + + GI + Sbjct: 319 NKITTAVEALISEGKEYDLELEMVTAK---GNQTWIRTNGRAEW-ENGKVVKIYGIIQDI 374 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRK 495 + + + + + L S +E +A++++E ++ ++ + P E+I+ K Sbjct: 375 NERKEWEMALASQTSILWSFVEHAPAAVAMLDQEMRYVALSQRWIDDYKIPLSKEEIIGK 434 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSC 553 + + +L L++ + +++++ I L Sbjct: 435 CHYEIFPNIGEAWKEIHARGLLGEVLKRDEDIWRPPGWDKDQVIQWEIRPWTLLSGGIGG 494 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + DI+E + K +L AK++AE + KS+FLA +SHEIRTPL IIG+S+++ Sbjct: 495 ILMFTRDITESYETKLELKKAKELAENAYNAKSEFLANMSHEIRTPLNGIIGYSDLLAET 554 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N EYA + +S + +L IVND+LD SK E+GK+ L P L + EAI Sbjct: 555 LVDTSFN----EYAQIVKQSAHTLLSIVNDILDFSKAEAGKLQLAEVPNDLKNLILEAIK 610 Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG----GQIIIS 728 ++ + A + IR +IP +L D ++Q+ LN++ NAI FT +G + Sbjct: 611 IMDIQAIVHGLDIRLHIDESIPNVLMFDSNRLRQVMLNLIGNAIKFTETGFIECRLTRLE 670 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + +V + V+DTG+G+ +K F Q S + GTGLGL + + ++ Sbjct: 671 SAIKQEVKVRISVKDTGIGIAKENQKKIFDSFTQEDFSTTRKFGGTGLGLAICRQLLQLM 730 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 + + S +G+ P Sbjct: 731 KSELKLKSEVGQGSEFFFEIP 751 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 31/375 (8%), Positives = 98/375 (26%), Gaps = 21/375 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 + HG + E++ L + +G + ++ L D++ + + L + + Sbjct: 152 NPHGEMIEVNPILCEWLGYDSDELKSKSLSDLTHPDDLPIELSYLEKLNQGQIPSFQIKK 211 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 I + + L I + + + + + + Sbjct: 212 RYITKSKESIWTILNKSIIRDTLGNPLYY--LSQILNMTDSIQSEMELRSISRLLDQMAN 269 Query: 210 IKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K K + + + + N + L+ Y++ + T L Sbjct: 270 LAKIGGWDLDLKTNQANWTNITKRIHEVEEDYIPNVENGLSFYHSEESRNKITTAVEALI 329 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 SE + + T NQ + G + + + + + ++ Sbjct: 330 SEGKEYDLELEMVTAKGNQTWIR-TNGRAEWENGKVVKIYGIIQDINERKEWEMALASQT 388 Query: 324 ETV----DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + P + + ++ K + + + Sbjct: 389 SILWSFVEHAPAAVAMLDQEMRYVALSQRWIDDYKIP----LSKEEIIGKCHYEIFPNIG 444 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A K + + + W+++ + P+ + + Sbjct: 445 EAWKEIHARGLLGEVLKRDEDIWRPPGWDKDQVIQWEIRPWTLLSGG--IGGILMFTRDI 502 Query: 438 VDTRINKRKMEIEVM 452 ++ K +++ Sbjct: 503 TESYETKLELKKAKE 517 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 28/262 (10%), Positives = 82/262 (31%), Gaps = 22/262 (8%) Query: 332 PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST---LLDAPKLSDNNAIKPVMLY 387 + V+ + Y +P + L+ + + + + + + Sbjct: 25 GYLVWDTNVGIVYPSPIAIRSMGLSHHQPFPAECILTHSGMRFQSEETTSDFILGRICFD 84 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 S+ + + + + F + + Sbjct: 85 PSNSAGFPFRFHSKEVFELGKRFIILALDAFLDEKEKNLPPIL--------------QSA 130 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 EI S + ++ G+ I N G ++ N + + GY +++ K + + Sbjct: 131 EISRDLFTSSFQYSNIGMEISNPHGEMIEVNPILCEWLGYDSDELKSKSLSDLTHPDDLP 190 Query: 508 VMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEW 564 + YL ++ + ++K + +KE L I + + Y + ++++ Sbjct: 191 IELSYLEKLNQGQIPSFQIKKRYITKSKESIWTILNKSIIRDTLGNPLYYLSQILNMTDS 250 Query: 565 KQEKNKLSHAKKIAEK-ESSHK 585 Q + +L ++ ++ + K Sbjct: 251 IQSEMELRSISRLLDQMANLAK 272 >gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis MB4] gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter tengcongensis MB4] Length = 456 Score = 347 bits (889), Expect = 6e-93, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 28/372 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R ++ L +IL++ ++G+ + IL N + K+ G +D+ + Sbjct: 101 RETIEELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGRRVFEV 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 + S + + + + K L + I P S + L Sbjct: 161 IRS---SKLYEVFETLRKNKVLSSKSLELNFFNK---HLKVYISPILHPVSHVNLGFVLV 214 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G Sbjct: 215 IDDITEMRKLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RSGA 257 Query: 618 LGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + NP E + + ID + ++ND+L +S+IE+ K E + +D+ + + + +++ Sbjct: 258 IENPEAREKFLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIME 317 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 A +K I ++ I+A+ Q+ +N++ N I +T GG + +ST E+ Sbjct: 318 KAAKDKSITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLE-GEK 376 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +I+ V D G+G+ ++ + + F ++ S+ + GTGLGL + K +V++ G+ + S Sbjct: 377 IIIEVEDNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436 Query: 797 TPAKGTLIEIIF 808 KGT I F Sbjct: 437 EVGKGTKFTIRF 448 >gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain [Oceanospirillum sp. MED92] Length = 2109 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 103/379 (27%), Positives = 171/379 (45%), Gaps = 16/379 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + +E S+ +GI + +G LS N A++ L GY D T Q Sbjct: 1475 QSLEQSEYDYKSLFLNAVEGIFRASPDGHFLSANPALATLLGYRSMDEFHDEITDIASQC 1534 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHD 560 + L T K + + + + +K+ +S ++ D Sbjct: 1535 FYVDHERVAFLEKLDTQHKILNFETRWRKKSGEPIYVSLSARKVLDASGQVQYYEGSLTD 1594 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+E K ++ A+ AE E+ KS FLA +SHEIRTP+ I+G ++++K + N Sbjct: 1595 ITERKAKEAA-EQARHEAEAENEAKSMFLATMSHEIRTPMNGILGMAQLMKQGQL----N 1649 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E + I +G +L I+N++LD SKIESG++ L +P + + + E +L + A Sbjct: 1650 SEQNEQIDTIYNAGQTLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKPVAQ 1709 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEE 736 EK + I + +P + D R + QI +N+ SNA+ FT G I IS + Sbjct: 1710 EKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNALKFTHQG-YIRISCEGLPDTQDKLK 1768 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + DTG+G+ + + F Q +S R GTGLGL + + +++ G+ S Sbjct: 1769 TRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRYGGTGLGLAITRQIIERLNGEIGFES 1828 Query: 797 TPAKGTLIEI--IFPLYDT 813 T +GT FP+ D Sbjct: 1829 TEEQGTTFWFELSFPITDE 1847 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNN-HIGDLLKRQNTW 143 + G+ + L +G + + D++ ++D + L Q+ Sbjct: 1495 IFRASPDGHFLSANPALATLLGYRSMDEFHDEITDIASQCFYVDHERVAFLEKLDTQHKI 1554 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 T W + + + + L+A + + + + G + A + + Sbjct: 1555 LNFETRWRKK-SGEPIYVSLSARKVLDASGQVQYYEG--SLTDITERKAKEAAEQA-RHE 1610 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 +E K + + Sbjct: 1611 AEAENEAKSMFLATMSHEIRTP 1632 >gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 607 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 129/590 (21%), Positives = 223/590 (37%), Gaps = 36/590 (6%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + + H L + L F L + Sbjct: 7 IGECLDALLHPSARLDALTSARHRAFIAPRLLGSLAAFAAFPLYLVLRGAPTAIEAAALA 66 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + S + ++ L+ + I + G + + + L Sbjct: 67 WLIAPILVAWFLSRTGRYEHAHFLSSLALTVLVIGVAALTGGIQSF---AAVWLVVIPIE 123 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + T + L + + + AA T+ S A+ Sbjct: 124 AALSASRRVVTFAVSLALGGALLLIALGGFGLLPQPEAAETSNTTLAAFGIGSAALYASV 183 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + +E + + SD I+ NR G + Sbjct: 184 LAYGAAWLARTNG--------------ALLNVEEERYRLLARNMSDVISRHNRNGAVRFI 229 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STK 534 + A L G P+ + + +++ ++E + Sbjct: 230 SPAAENLIGVPMVQLAEHGLFDRVHVADRPAYLKAISDAARGRETGSVEFRIRREVVRDE 289 Query: 535 EEK-----LLSLRIIIKKLP--------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + + + + L + M DI+E K + L A+ A++ Sbjct: 290 RGRPSAAEFVWVEMRCRPLEPGAATAPTGETEVVAVMRDITERKLHEQALDEARAEADRA 349 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS FLA +SHE+RTPL AIIGFS++I + LG R EYA I+ SG +L +V Sbjct: 350 DDAKSRFLATMSHELRTPLNAIIGFSDMIVQEDELRLGAERRKEYAQLINDSGQHLLSVV 409 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 N +LD+SK+ESG + EP + A+ +L+ L A + I + T N+P ++ D Sbjct: 410 NGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPDVVGDP 469 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R+ KQI LN++SNA+ FT GG + +S + ++L V DTGVG+ +L++ PF Sbjct: 470 RAFKQILLNLVSNAVKFTERGGTVTVSAAVE-STRLVLCVTDTGVGIAEEDLKRLGDPFF 528 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 Q + Q R EGTGLGL + K++V + G+ + S GT + + PL Sbjct: 529 QAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIDVRSQIDCGTTVTVSLPLA 578 Score = 38.5 bits (88), Expect = 5.1, Method: Composition-based stats. Identities = 25/261 (9%), Positives = 64/261 (24%), Gaps = 28/261 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNT---- 142 + +G ++ IS IG ++ L D + I D + + T Sbjct: 219 RHNRNGAVRFISPAAENLIGVPMVQLAEHGLFDRVHVADRPAYLKAISDAARGRETGSVE 278 Query: 143 -WYGKTTLWPIEGT---NLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPR 194 + + G +V +++ P+ + G ++ Sbjct: 279 FRIRREVVRDERGRPSAAEFVWVEMRCRPL--EPGAATAPTGETEVVAVMRDITERKLHE 336 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + K + + + ++ +D++ Sbjct: 337 QALDEARAEADRADDAKSRFLATMSHELRTPLNA-----------IIGFSDMIVQEDELR 385 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLS 312 + ++ + Q +N K G + L + + Sbjct: 386 LGAERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLAL 445 Query: 313 AYFDEGENLTPETVDKCPIPF 333 D G +L + P Sbjct: 446 KARDSGIDLVTRAPENLPDVV 466 >gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 806 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 96/409 (23%), Positives = 176/409 (43%), Gaps = 24/409 (5%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + D R + + + E I + +G ++ Sbjct: 263 NRVPTEDDKKVIGIIASALSAEEDRRQAREDLVRSQESFKRLAEQCPISIMQFDSQGRLI 322 Query: 476 STNRAVSKLFG---YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKIT 529 N + F + +L L + +N +++IL+ + + + Sbjct: 323 FVNEWHMQHFAGNAVDKQKLLGMHI-QELPGLEKAGINEQVSQILNGEHLDVPEIFFPEF 381 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 +G + + L L D++ WK+ + +L A++ AE S K+ Sbjct: 382 IG----GGCGWVSLRGVPLKEGDKITGGILIREDLTAWKKTEQELVKARQEAEAASRVKT 437 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHEIRTPL I G +++K + EY + +S + + +++D+LD Sbjct: 438 EFLANMSHEIRTPLNGIAGMLQLLKETSL----DMEQKEYVDLGIKSSHRLTRLLSDILD 493 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705 +S+IE+G M +H E E S L + K + + F P R++ D ++ Sbjct: 494 LSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSLECIFQEGFPSRLVGDEARIQ 553 Query: 706 QIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 QI N++ NA+ FT GG + +S + + ++V + V+DTG+GM L++ KPF Sbjct: 554 QILFNLVGNALKFTEKGG-VQVSWSLYAGDDTEQQVRITVQDTGIGMEQEVLQELFKPFV 612 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q NS + +G GLGL + K +V+ G + S P +G+ + PL Sbjct: 613 QAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGSTFYVDLPL 661 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 14/142 (9%), Positives = 46/142 (32%), Gaps = 10/142 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + + E + GI + +GII+ N K+ G + ++ + Sbjct: 7 NLCSSEERYRKLFENSPLGIFQADDKGIIVDCNDNFVKIIGSSRQALIGLNIHSLPDTKL 66 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDI 561 + L+ + S +K +++ + + + D+ Sbjct: 67 VTEFKKSLSG------EAGFYEDVYHSVSVDKATPVKVHFAPIFADNGRIQGCMGIVEDV 120 Query: 562 SEWKQEKNKLSHAKKIAEKESS 583 ++ K ++ ++ + + + Sbjct: 121 TQKKLDEEEIHKNARRLSEINH 142 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 34/418 (8%), Positives = 102/418 (24%), Gaps = 59/418 (14%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G + + ++ K IG+ +IG+ + + L + +Y Sbjct: 26 IFQADDKGIIVDCNDNFVKIIGSSRQALIGLNIHSL---PDTKLVTEFKKSLSGEAGFY- 81 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ + P+ + PI++ N G G IV + ++ S Sbjct: 82 -EDVYHSVSVDKATPVKVHFAPIFADNGRIQGCMG--IVEDVTQKKLDEEEIHKNARRLS 138 Query: 206 HL--------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD------ 251 + + + + D+ + + S+ ++ A +D Sbjct: 139 EINHCLLGLGQDFETNVQRLTALCGDLLGAACALYNRLESGLLCSMGQWQAPEDYDPRDH 198 Query: 252 --------------------DVLKTEKYPLLTSEESSLPEQEDFHTI-------NLNQYT 284 L +Y + Sbjct: 199 PQGHICYDAIKQGQNETMVVTDLDQTEYARTDPNVRRYNLKTYLGHPVKCGEDFVGTLCV 258 Query: 285 KKQYFGTLQNN-----SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338 Q + + + + + ++CPI + Sbjct: 259 VYQENRVPTEDDKKVIGIIASALSAEEDRRQAREDLVRSQESFKRLAEQCPISIMQFDSQ 318 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G L + N ++ + + ++ L + + I + + + Sbjct: 319 GRLIFVN---EWHMQHFAGNAVDKQKLLGMHIQELPGLEKAGINEQVSQILNGEHLDVPE 375 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ++ ++ + I + + ++++ + + Sbjct: 376 IFFP-EFIGGGCGWVSLRGVPLKEGD-KITGGILIREDLTAWKKTEQELVKARQEAEA 431 >gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum SW] Length = 693 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 123/404 (30%), Positives = 196/404 (48%), Gaps = 8/404 (1%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 +E + + + + + +GI I + E Sbjct: 260 VQRRSRAHARMSATLRRANLELEARIQERDRVSAILTESERKYRDLYQNALEGIFITSLE 319 Query: 472 GIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 G LS N A+ ++ GY E ++ P+ L ++ Q E Sbjct: 320 GRFLSVNPAMVRMLGYGSETELLVGLLDIGSQLYVDPARRGEMLRQMREKGTVQDFEAEM 379 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHK 585 ++ + L + + L S+ + D++E ++ + A + +E + K Sbjct: 380 --RRRDGSTVWLSLTARALRNSAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAK 437 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA +SHE+RTPL AIIGFSE+I Q GP+GNP Y EYA+ I SG ++LD++N++L Sbjct: 438 GEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRVLLDVINEIL 497 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+S IE+G+ L V + V ++ L++ A + + + T+ +P + AD ++K Sbjct: 498 DLSAIETGRRELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPLVRADETALK 557 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QI N+LSNA+ FTP GG+I T + ++L VRDTG+GM +L AM+PF Q+ Sbjct: 558 QILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHAMEPFRQVEK 617 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G GLGLPL KA+VD + G F + STP GTL + P Sbjct: 618 PLTRHAGGAGLGLPLVKALVDLHGGSFELESTPDAGTLASVWLP 661 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 55/492 (11%), Positives = 121/492 (24%), Gaps = 62/492 (12%) Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----- 185 L ++ G +G+ +P LP R G R G Sbjct: 108 PRFAGTLLERHPHLGAFAWRLADGSTGVLPERQGPLP---DLRAGDGVRLSGDTLVFERT 164 Query: 186 -VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSL 243 A + H + + P L + ++ L Sbjct: 165 VPADGGPASVAALVTARELSDHPLPGSLAFRATLLAPGTVAPPAGPNSLMLELPDQGWIL 224 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 V L + + + + + E Sbjct: 225 RLEAPPVPPVSPAIPLATLCFALAVTVALAAYAQMVQRRSRAHARMSATLRRANLELEA- 283 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 + +SA E E + F+ S G NP+ + + Y S ++ Sbjct: 284 RIQERDRVSAILTESERKYRDLYQNALEGIFITSLEGRFLSVNPAMVRMLGYGSETEL-- 341 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 GL + + + + R T A + + +++ ++ N Sbjct: 342 LVGLLDIGSQLYVDPARRGEMLRQMREKGTVQDFEAEM---RRRDGSTVWLSLTARALRN 398 Query: 423 QFPENMPQNGIEPEDVDTRIN----KRKMEIEVMQLCS---ILEATS-------DGIAII 468 + G + + R + M+ M + L S + I Sbjct: 399 SAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSHELRTPLNAIIGF 458 Query: 469 NREGIILST-------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + I++ N A ++ ++ V+ + EIL L Sbjct: 459 SE---IIAAQSLGPIGNPAYAE--------------YASDIHDSGRVLLDVINEILDLSA 501 Query: 522 RQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 +T + T + +++ + + + ++ L + Sbjct: 502 IETGRRELKERTVDIGRVVRGSLRLIRERALQGG------VTLETALDETLPLVRADETA 555 Query: 581 ESSHKSDFLARV 592 S+ L+ Sbjct: 556 LKQILSNLLSNA 567 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 33/382 (8%), Positives = 90/382 (23%), Gaps = 26/382 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142 + G ++ + + +G + + + L D+ L++DP + + ++ Sbjct: 313 IFITSLEGRFLSVNPAMVRMLGYGSETELLVGLLDIGSQLYVDPARRGEMLRQMREKGTV 372 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G+ V + L A + + + + F+G + + + Sbjct: 373 QDFEAEMRRRDGST--VWLSLTARALRNSAGQITSFQG--SCEDVTERRRAVEIMRVAMQ 428 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL- 261 + + K + + + + A+ + Sbjct: 429 QSEMANRAKGEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRV 488 Query: 262 ---LTSEESSLPEQEDFHTINLNQ-----YTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + +E L E + + ++ + + L +L Sbjct: 489 LLDVINEILDLSAIETGRRELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPL 548 Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + L + F G + +V D I L A Sbjct: 549 VRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHA 608 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---------NRENSLAMTFIPFEKANQ 423 + + L + + ++ Sbjct: 609 MEPFRQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELESTPDAGTLASVWLPADRVRRD 668 Query: 424 FPENMPQNGIEPEDVDTRINKR 445 P + G T R Sbjct: 669 TPPEASRTGGGKAGTATVCAAR 690 >gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri] Length = 744 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 107/415 (25%), Positives = 189/415 (45%), Gaps = 25/415 (6%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 I E Q E Q + ++ L +L+ GI + EGI+ Sbjct: 328 IATELERQQTEAARQQAQYELERLVEQRTTELSKANELLKVLLDNVQAGIVACDAEGILT 387 Query: 476 STNRAVSKLFGYPVEDI----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 N+A + G P + + K + ++L + + + +L + + Sbjct: 388 LFNQAARQFHGLPEQALPPEEWAKHYDLYLPDGKTRMSKNEIPLFRALQEQTVKNVEMVI 447 Query: 532 STKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKI---------- 577 + K K+ +L + + + + MHDI+E K + + + Sbjct: 448 APKHGKVKTLLASGQAIVDNEGKKQGAVVVMHDITERKIAEAERIQLIRQQVQEQSARLK 507 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + K +FLA +SHE+RTPL I+G+++++ R G L + + I+R+ L Sbjct: 508 AEEANRLKDEFLAVLSHELRTPLNPILGWTKLL---RAGKLDSAKTDYALETIERNAKLQ 564 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 ++ DLLD+S+I GK++L+ V+L +S AI VQL A K I I T F N+ ++ Sbjct: 565 TQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDPNVGQV 624 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 L D ++Q+ N+LSNA+ FT +GG++ I + + ++V DTG G++ L Sbjct: 625 LGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECVDS-QAEIKVSDTGKGISPDFLPHVF 683 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPL 810 + F Q + + G GLGL + + +V+ + G Y S P + G + PL Sbjct: 684 ESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIYAES-PGEDLGATFTVRLPL 737 >gi|327478670|gb|AEA81980.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166] Length = 992 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 110/594 (18%), Positives = 219/594 (36%), Gaps = 37/594 (6%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 P +++ +L + L L S + + Sbjct: 422 EPQRLLEDAAQALVHVHPQDLPRLHRALLRL-AVHPGSGAVEFRIQHPQRGLLWAEGRAS 480 Query: 291 TLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYA 344 + + + E+ V P + + + Y Sbjct: 481 AERLADGTVLWHGFVTEITELMEATRALQKSESRFRAMVGNLPGVVYRCRNDGRRRMSYL 540 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + LT Y + D + L P P + R++ I Sbjct: 541 SEGIERLTGYPASDFVGDRVRSYGSLIHPDDQAQAEQSPA--------QDSFE-RIYRIT 591 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 ++ + + +G + D + K++ME L +++ D Sbjct: 592 NAEGRTVYVREKARVLRERDDPVGWCDGFIWDVTDQALAKQEMEERERYLSMLIDNVIDA 651 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I II+ GII + N A ++FGY ++++ + ++ + + S + YL + Sbjct: 652 IIIIDGRGIIETFNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRA 711 Query: 525 LE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 LE + + + ++ + + ++ + + DI+E K+ + Sbjct: 712 LEQNRELTALRRNGETFTIELRVSQISHHGERRFIGLVRDITERKRIE------------ 759 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 KS+ ++ VSHE+RTPLT+I G +I G +P ++ ++ + + Sbjct: 760 --RMKSELVSIVSHELRTPLTSISGALGLIVGGALGE-PSPTMLQMLTIAHQNSLRLGRL 816 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 V+DLLD+ K+ +GKM L SL + A Q YA + + ++ + +++AD Sbjct: 817 VDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPLPTL-QLIAD 875 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ N++SNA+ F+P GG + + V + VRD G G+ + + F Sbjct: 876 DDRLQQVLANLISNAVKFSPEGGTVSLGAQQR-GAWVRIWVRDQGPGIAPEFHARIFQKF 934 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q +S + GTGLGL ++K +++ G+ S P G PL + Sbjct: 935 SQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELPLAPAA 988 Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats. Identities = 24/270 (8%), Positives = 61/270 (22%), Gaps = 20/270 (7%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGY--LKEISEELPKTIGNYAFKMIG---MRLCDVSDI 124 SE+ F + G + +SE + + G A +G + Sbjct: 511 SESRFRAMVGNLPG-VVYRCRNDGRRRMSYLSEGIERLTGYPASDFVGDRVRSYGSLIHP 569 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + + V + A + R+ GF + Sbjct: 570 DDQ------AQAEQSPAQDSFERIYRITNAEGRTVYVREKARVLRERDDPVGWCDGF--I 621 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS 242 + + ++ S L + + + I + + ++V Sbjct: 622 WDVTDQALAKQEMEERERYLSMLIDNVIDAIIIIDGRGIIETFNHAAEQIFGYRSDEVIG 681 Query: 243 LTEYYAHKDDVLKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + L +L + + + N T Q + Sbjct: 682 RNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRRNGETFTIELRVSQISHHG 741 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++ + + ++ V Sbjct: 742 ERRFIGLVRDITERKRIERMKSELVSIVSH 771 Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPI 152 + + G + ++IG L + ++ D R+ T + T Sbjct: 664 FNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRR 723 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G + + ++ + + R G+V + L SH Sbjct: 724 NGETFTIELRVSQISHHGERRFI------GLVRDITERKRIERMKSELVSIVSHELRTPL 777 Query: 213 GHSSVEKEKYDIFSQQSPPP 232 S + P P Sbjct: 778 TSISGALGLIVGGALGEPSP 797 Score = 37.7 bits (86), Expect = 8.4, Method: Composition-based stats. Identities = 33/315 (10%), Positives = 77/315 (24%), Gaps = 47/315 (14%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 F+ +R + ++ L + ++ ++ Sbjct: 33 AFNDYRARDVAWHLEIETHGELQSLALQSAQLNQRRQADMVATALAGNAEVL-------- 84 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 +M+ ++L + + D L+ + L + + + + L + L+ Sbjct: 85 RQMRLIDAALRDGRSLDDPRLERSRQRLRAALTPAWRSMQRHQALQLQLFWGDAGVTVLR 144 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------------------------ 329 E F P L +G VD Sbjct: 145 MQQPERFGDTQAAQRPMLQRVLRDGIEQFGLEVDALGASSRVIVPLRAVDRQDSEVIGAL 204 Query: 330 ----------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 P + G N L ++ ++++ G LL + Sbjct: 205 EVGYNVLPELPDLSAQLAAGLALIVNREALQASQTTPPSGVQLSEGSDWLLIGH-----S 259 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + + ++ S + + S + IP Q + P D Sbjct: 260 ATQVLHWAQAGVLPEPGSGKGSRLLDADGRSYILNQIPLHDEQQAEPSTPPLAAALAWRD 319 Query: 440 TRINKRKMEIEVMQL 454 + + +L Sbjct: 320 ISAMQGEHLQAERRL 334 >gi|32477267|ref|NP_870261.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1] gi|32447818|emb|CAD77336.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1] Length = 1182 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 105/572 (18%), Positives = 202/572 (35%), Gaps = 51/572 (8%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + + + + +LQ D+ E +D+ Sbjct: 147 LQGRLRTRLKHQRTLQHRVHRRSLQIRRVNRALRNEVTRRQETQHRLDQSETTFQSLIDR 206 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + S G YAN F VD I G L + + + Sbjct: 207 MHLQVARKSAEGVFTYANEQFCADIGMTPVDVI---GSTDAELFGDSIGAKYRADDLSVM 263 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + + +Q + + I + + N+ + Sbjct: 264 STGQAVDKVEVHPGP----DGRIGFAQVFKAPEYDQNGQCVGVQIIFWDITEKHRNEIAL 319 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + ++ +A D + +I+ + I+ N + S+L ++ +P + + Sbjct: 320 RDSEARKRALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQ 379 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWK 565 L + + I + ++ ++ + D++ + Sbjct: 380 W----------GGLPLAERHQLRLRRGDGSSFESEVSIHHIPVGDATGQAVIIRDVTLQR 429 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + AK AE+ + K+ F+A +SHE+RTPL I G ++++ Q Sbjct: 430 AAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQTLPTAA----RR 485 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N I ++ L+ D++ D+LD + IE+G++ + PV L E V +A + + +K + Sbjct: 486 YVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFGCLAVRVADKPVR 545 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG--------------------- 723 + S A + PR ++AD + ++QI +N+ NAI FT G Sbjct: 546 LCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRGEVSLRLGPIGDAPPSHGNDANS 605 Query: 724 -QIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +I ST T L V DTG+G+ + F Q + GTGLGL + Sbjct: 606 PEITTNGSTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGTNKQFGGTGLGLAI 665 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIE--IIFPL 810 A+ + G + S G+ + + PL Sbjct: 666 ARGLAQRMGGDITVTSQVDLGSQFQCALALPL 697 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 35/369 (9%), Positives = 93/369 (25%), Gaps = 25/369 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146 A G +E+ IG +IG ++ D + ++ Sbjct: 213 RKSAEGVFTYANEQFCADIGMTPVDVIGSTDAELFGDSIGAKYRADDLSVMSTGQAVDKV 272 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + + P Y +N + G + I + + + + Sbjct: 273 EVHPGPDGRIGFAQV--FKAPEYDQNGQCVGVQ--IIFWDITEKHRNEIALRDSEARKRA 328 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLKT 256 L + + ++ I L R N + S + + Sbjct: 329 LFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQWGGLPLAER 388 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + L + SS + H I + T + +++ + + + + R + + + Sbjct: 389 HQLRLRRGDGSSFESEVSIHHIPVGDATGQAVI--IRDVTLQRAAFEAMREAKAAAEQAN 446 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + G + T + +T L + Sbjct: 447 RTKTQFMAGISH----ELRTPLGGIRGLTDLLGQQTLPTAARRYVNLIAQNTELLRDVIE 502 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D + R + + + +K + ++ + Sbjct: 503 DILDFAAIEAGRVAIDPVPVDLHEVV----GDAFGCLAVRVADKPVRLCLSIAPDTPRRV 558 Query: 437 DVDTRINKR 445 D + ++ Sbjct: 559 IADPKRIRQ 567 >gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1153 Score = 347 bits (889), Expect = 7e-93, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 159/376 (42%), Gaps = 21/376 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLE 502 + + S+ E + +G+ +++G + S N A++++ GY P + Sbjct: 245 AALRKAEAKYRSMFENSREGLFKTDQDGGLESANPALARILGYQSPRDLPDGATMLKQHL 304 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTM 558 E+ + G ++ + ++ Y + Sbjct: 305 IPEKEKRIQLYRELEEAGEA--VGVEVRGVRRDGSFFWGEFTVLRVEGEAESSRSYECIL 362 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D +E K + K+ A + KS F+A +SHEIRTP+ AIIG S + Sbjct: 363 VDTTERKFREIA-EREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTS- 420 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R +Y I+ S +L I+ND+LD+SKIE+G++ + L++A++ +V + Sbjct: 421 ---RQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVK 477 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735 A+EK + + ++P ++ D + Q+ LN+ NA+ FT G Q+II Sbjct: 478 ADEKGLDVIFDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQG-QVIIKVRREREAAD 536 Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V DTG+GM + + F Q S + GTGLGL ++K +VD G+ Sbjct: 537 VQGSTLRFSVIDTGIGMRAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGGE 596 Query: 792 FYIFSTPAKGTLIEII 807 + S G+ Sbjct: 597 ISVSSEFGVGSTFTFT 612 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 40/353 (11%), Positives = 89/353 (25%), Gaps = 31/353 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNT 142 + D G L+ + L + +G + + + + L + I +L + Sbjct: 265 LFKTDQDGGLESANPALARILGYQSPRDLPDGATMLKQHLIPEKEKRIQLYRELEEAGEA 324 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G+ + EF+ R G +R L ++ Sbjct: 325 VGVEVRGVRRDGSFFW--------------GEFTVLRVEGEAESSRSYECI--LVDTTER 368 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK---- 258 KF + E +K + + E +F N + L+ D + Sbjct: 369 KFREIAEREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTSRQRDYLTK 428 Query: 259 -YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 S + + D I + T + L++ + +S + + Sbjct: 429 IEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVKADEKGLDVIFD 488 Query: 318 GENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 P + P + N ++ K + + G + Sbjct: 489 IGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQGQVIIKVRREREAADVQGSTLRFSVID 548 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + T A + + L +T E Sbjct: 549 TGIGMRAQQAPYLFQSFTQ----ADASITRKHGGTGLGLTISKHIVDLMGGEI 597 >gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter autotrophicus Py2] Length = 770 Score = 346 bits (888), Expect = 7e-93, Method: Composition-based stats. Identities = 136/693 (19%), Positives = 265/693 (38%), Gaps = 58/693 (8%) Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 DL+ L + + + G + V + + +++ + + + Sbjct: 75 DLSLLALATAEG-LTLRAGNSLARVPSALEESLPPRATESGRRAYVTDAQGRIIASAPRS 133 Query: 222 YDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277 + P + + L + + + L E Sbjct: 134 EAPANLADLIDPAQPLVIFAERAGVLEVPFGTGTALATVRNLSAPLGQIVFLQPTERALA 193 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY---FDEGENLTPETVDKCPIPFF 334 + T T + H +D +++ + Sbjct: 194 SWSDSTTLTVTLFTTTGTVLLILGFSFHWQASRAREADAIYDTVRRRIDTALNRGRCGMW 253 Query: 335 VYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + Y + + + + D++ G ++ L D+ + + ++R Sbjct: 254 DWDMARGRMYWSDTMFEILGLERKDELVSFGEIAKL----VHPDDGDLYELAQELAERPG 309 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 R+ ++ + + + + Q + GI + + + + M+ Sbjct: 310 TPVD-RVFRMRTAKGDFVWLRMRAEVVQQQGEDGPHLIGIAMDVTEAQRMAERTVTADMR 368 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512 L +E+ S+ + + + ++ N L P E I PF V + Sbjct: 369 LRDAIESISEAFVLWDSQNRLVLCNSKFQSLHELPDEAIHAGTPFDVIASVGRHPITRTP 428 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 L D + + + L + ++ + Y DI+ K+ + +L Sbjct: 429 L---KPEDKPEEGSRAFEAQLSNGRWLKI---AERRTKDNGYVSVGTDITTMKRHEERLM 482 Query: 573 HAKKIAEK-----------------------------------ESSHKSDFLARVSHEIR 597 +K + KS+FLA +SHE+R Sbjct: 483 DNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEERNKAEDANRAKSEFLANMSHELR 542 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AIIGFSE++++ FGPLG+ +Y EY I SG +LD++ND+LD+SKIE+G+M L Sbjct: 543 TPLNAIIGFSEIMESGMFGPLGSEKYAEYCTDIKGSGTYLLDVINDILDMSKIEAGRMQL 602 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E ++LD+ +++A+ + + +EK I + + A N+ I D R++KQI LN+LSNA+ Sbjct: 603 EVEDLALDDIIADALRVTAVNGDEKNIAMTMAAAPNL-AIKGDRRALKQILLNLLSNAVK 661 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FTP GG I + ++ + DTG+G+ L + +PF Q+ + +G+GLG Sbjct: 662 FTPEGGNIAVKARIN-GAAAVIAIEDTGIGIAKDALARIGRPFEQVESQFTKTHKGSGLG 720 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L +AK++V+ + G I S +GT + + P+ Sbjct: 721 LAIAKSLVELHGGAMRIRSVEGRGTTVIVRLPV 753 >gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2] Length = 781 Score = 346 bits (888), Expect = 7e-93, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 176/380 (46%), Gaps = 14/380 (3%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +++++ + +IL +D I I + +G IL + +++FGY ++++ T + + Sbjct: 272 KQLKMTQAEQNAILACLTDAIIICDAKGNILFFSEQATEMFGYSAKEMIGVNVTKLMIND 331 Query: 505 TPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560 + Y+ + + + + + K + ++IK+L S + + D Sbjct: 332 HAKHHHDYIKGYQASGTSKVIGKNRDLIAVKKSGDEFPISLVIKELANISKLTFVGIISD 391 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS KQ + +L AK AE + KS FLA SHEIRTP+ I G ++++ + G Sbjct: 392 ISHIKQREKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLECEPLTQNG- 450 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 S ++ IVND+LD SKIE+GK+NL + ++ S + L Sbjct: 451 ---QNLLKQATYSTQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLAHLESDMSLQTK 507 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----- 735 +K I ++ D ++QI +NI+SNAI FT GG I+IS Sbjct: 508 DKNITLKIHNTITHDDWYGDALRIRQILINIISNAIKFTQQGG-IVISCYCNQANNASIN 566 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +V + DTG+GM+ L+K + F Q NS R GTGLG+ + ++ GK + Sbjct: 567 QVTFEITDTGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLTTLMEGKINVQ 626 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S GT +I+ PL Sbjct: 627 SEEGVGTKFQIMLPLKRAEA 646 >gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum anthropi ATCC 49188] Length = 784 Score = 346 bits (888), Expect = 8e-93, Method: Composition-based stats. Identities = 139/666 (20%), Positives = 263/666 (39%), Gaps = 59/666 (8%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + R+ G + + + ++ D+ + + + + Sbjct: 117 DTIAEFRSRGLSSSGMTLAVIDPQSSVVAISGPISDLSGK-----PVDTILTEAQPLFLF 171 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---------QYTKKQYFGTLQNNSKE 298 A + VLK S P + I + + + Sbjct: 172 AERAGVLKVMLQGEPAFGALSKPMTLPYSVIAVEPESTIFAEWRRAVSLNVTLFAGTTGV 231 Query: 299 SFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLT 352 F L + + + + + + Y + S + Sbjct: 232 MFAILYAYFSQAARAREADDLSGQIQRRIDLALGRGRCGLWDWDMARGRIYWSRSMYEML 291 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y++ D + G ++ +++ + + + R+ ++ + + Sbjct: 292 GYEAQDAVLPFGDVAAIINTEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVW 346 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 M + + GI + + ++ M++ +E S+ + + Sbjct: 347 MRVRAEIASEGD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFILWDSNN 403 Query: 473 IILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-- 529 ++ N S+ G PV + P P + + QT E+ Sbjct: 404 RLVMANSKFSEYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSD 463 Query: 530 -------LGSTKEEKLLSLRIIIKKL--------PFSSCYSLTMHDISEWKQEKNK---- 570 T++ L+S+ I +L T+HD+S ++ + Sbjct: 464 GRWLQVNERRTQDGGLVSIGTDITQLKLHQERLVDSERRLMATIHDLSIARKGERDRVRE 523 Query: 571 -------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY Sbjct: 524 LSELARKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRY 583 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EY N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A+EK Sbjct: 584 EEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMISLQADEKN 643 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + T + ++ AD R++KQ+ +N+LSNA+ FT GGQI + T + + + ++D Sbjct: 644 IAVNTRIEEAM-QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSA-LFMTIQD 701 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG+ ++K +PF Q+ N G+GLGL + +++ + + G I ST GT+ Sbjct: 702 TGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTV 761 Query: 804 IEIIFP 809 + + P Sbjct: 762 VSVCIP 767 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 52/526 (9%), Positives = 138/526 (26%), Gaps = 47/526 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145 ID + IS + G ++ + + + ++ + +G Sbjct: 137 IDPQSSVVAISGPISDLSGKPVDTIL----TEAQPLFLFAERAGVLKVMLQGEPAFGALS 192 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-----FGIV-----HVNRVDNDPRA 195 K P + + A + + + F G F I+ R Sbjct: 193 KPMTLPYSVIAVEPESTIFAEWRRAVSLNVTLFAGTTGVMFAILYAYFSQAARAREADDL 252 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----EYYAHK 250 G+ + L + G + + I+ +S L + + + L + Sbjct: 253 SGQIQRRIDLALGRGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLPFGDVAAIINTE 312 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHP 309 D L + + S + + + + + + Sbjct: 313 DGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVGIAFDVSEQH 372 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E + E ++ F ++ + L AN F Y + + G+ Sbjct: 373 RFAQQTAEADMRIREAIENISEAFILWDSNNRLVMANSKFSE---YAGLPVWTLKPGVPR 429 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + + +L +W + + ++ Sbjct: 430 NEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRW------------LQVNERRTQDG 477 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 I + ++++ ++ +L + + S IA + + K Sbjct: 478 GLVSIGTDITQLKLHQERLVDSERRLMATIHDLS--IARKGERDRVRELSELARKYGQEK 535 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 N + L I+ + ++ T G ++ I + Sbjct: 536 ERAEAANRAKSEFLANMSHELRTPLNAII--GFSEMIQAGTFGPLGSDRY---EEYINDI 590 Query: 549 PFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 S + L ++DI + + + + ++ + +S Sbjct: 591 HTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMIS 636 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 13/249 (5%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 271 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINTEDGDLYSIAEQAAAGDI 328 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 329 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 383 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260 + E + + S V +L + T + Sbjct: 384 RIREAIENISEAFILWDSNNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRPFTFE 442 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E + + F + + Q+ S + D Sbjct: 443 RRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLHQERLVDSERR 502 Query: 321 LTPETVDKC 329 L D Sbjct: 503 LMATIHDLS 511 >gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM 5692] Length = 1316 Score = 346 bits (888), Expect = 8e-93, Method: Composition-based stats. Identities = 127/799 (15%), Positives = 251/799 (31%), Gaps = 93/799 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + G + ++ +T+G + + M D+ H + L + + Sbjct: 144 VGPDGLFQFVNPAWEETLGYSQDEALQMFFEDIIAPEHRSHCRNRFQGLLQGREFRDIRV 203 Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G + + P +N E +G I ++ Sbjct: 204 PMLTKAGRIIQT--EAHLFPRL-QNGEVIATQG--IFQDITERLQAEKRELAAQQRLRDF 258 Query: 208 HEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 ++ + + S + H +D + Sbjct: 259 FQLAPAVIYRLDPDSWQVLDVTPYVSELLGYTIQETLAPSWWRDHLHPEDKHAAFEANAD 318 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEG 318 S+ + + + +++N + +L+ +L E Sbjct: 319 LFATGSVAHEYRIRHKKGHWVWVQDRIKLIRDNQGQPQEIIGAWLNISERRALEIQLQES 378 Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDI----EIAGGLSTLLDA 372 E + F+ +G + ANP+ + + L+ Sbjct: 379 EARYRNIFNNHHTVMFIIDPANGQIEDANPAAETFYGWDRATLLSMNVAEINTLTEREVQ 438 Query: 373 PKLSDNNAIK----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK----ANQF 424 ++ + + R+D + + N L + ++ Sbjct: 439 EEMQNARRQRRTYFEFQHRRADGSVRFVEVYSGPVHLYGRNLLYSIVHDATERVQARDEI 498 Query: 425 PENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILE---ATSDGIAIINREGIILSTNRA 480 + + + +I L + L+ ++ + I EG + N Sbjct: 499 WRQKNLLASINTILHDALYCDTEAKIAESGLEAALKLTGSSGGWVGIRTPEGKV---NTL 555 Query: 481 VSKLFGYPVEDILR-----------------------------KPFTVFLEQNTPSVMNH 511 + G K + + Sbjct: 556 ALQWSGSEGTPHKGPHQLQGLHMQGLWGAVIQQGASLLTNAPQKHPRFEGLPENHIPLQN 615 Query: 512 YLT----------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 +L +++L T +T E+ ++L +++ ++ Sbjct: 616 FLGVPLQQGGVTIGLIALANASEGFTETDRTTAEDLSVALAEALQRKKADQALHAFNAEL 675 Query: 562 SEWKQEKN--------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 E + + L AK AE + KS FLA +SHEIRTP+ AI+G +IK Sbjct: 676 EERVRARTTDLEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQT 735 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + Y + + S +L+I+ND+LD SKIESGK+ L ++ + Sbjct: 736 HLSA----KQANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAE 791 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 L+ L A +K I++ N P + D ++Q+ +N++ NAI FT G I ++ Sbjct: 792 LLGLEAQQKGIVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHG-HIQVTQRLT 850 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + E I V DTG G+ + E + F Q S GTGLGL ++K +V+ Sbjct: 851 QWVEAQAECIFEVEDTGPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMM 910 Query: 789 MGKFYIFSTPAKGTLIEII 807 G+ + STP +G+ Sbjct: 911 GGEIGLQSTPGQGSRFTFR 929 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 50/514 (9%), Positives = 122/514 (23%), Gaps = 35/514 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----IDPNNHIGDLLKRQNTW 143 +D + + + A + G +L D + + + H + Sbjct: 27 LDHTLCIIAANTSAAALLQTSADLLPGQKLPDFAGQGQPWLAKLCAHLHRFPVFTDLELD 86 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G T + + P LA + G Sbjct: 87 RGITANSRLFAGDTETPRLLAVGLDLPSSHPLPG-------RDTTDAEHRYQTLVTNAPL 139 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 V + + + + LL Sbjct: 140 LIQSVGPDGLFQFVNPAWEETLGYSQDEALQMFFEDIIA-----PEHRSHCRNRFQGLLQ 194 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENL 321 E T+ F LQN + + + + Sbjct: 195 GREFRDIRVPMLTKAGRIIQTEAHLFPRLQNGEVIATQGIFQDITERLQAEKRELAAQQR 254 Query: 322 TPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + P + + P L Y + + + L K + Sbjct: 255 LRDFFQLAPAVIYRLDPDSWQVLDVTPYVSELLGYTIQETLAPSWWRDHLHPEDKHAAFE 314 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + S A + I+ + + + + + + G + Sbjct: 315 ANADLFATGS-------VAHEYRIRHKKGHWVWVQDRIKLIRDNQGQPQEIIGAWLNISE 367 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498 R + +++ + +I + II+ G I N A +G+ + + Sbjct: 368 RRALEIQLQESEARYRNIFNNHHTVMFIIDPANGQIEDANPAAETFYGWDRATL----LS 423 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSL 556 + + + E+ + ++ + + + + L + Sbjct: 424 MNVAEINTLTEREVQEEMQNARRQRRTYFEFQHRRADGSVRFVEVYSGPVHLYGRNLLYS 483 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 +HD +E Q ++++ K + ++ D L Sbjct: 484 IVHDATERVQARDEIWRQKNLLASINTILHDALY 517 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 71/284 (25%), Gaps = 29/284 (10%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 PS + + P + AN S L + + Sbjct: 2 PSAPTPSERRLARHCAEASRAPFLVL-DHTLCIIAANTSAAALLQTSAD----------- 49 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 LL KL D L + + A + + E +T A Sbjct: 50 LLPGQKLPDFAGQGQPWLAK-----LCAHLHRFPVFTDLELDRGITANSRLFAGDTETPR 104 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + R + +++ I + +G+ N A + GY Sbjct: 105 LLAVGLDLPSSHPLPGRDTTDAEHRYQTLVTNAPLLIQSVGPDGLFQFVNPAWEETLGYS 164 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++ L+ F + S + +L + + TK +++ + Sbjct: 165 QDEALQMFFEDIIAPEHRSHCRNRFQGLLQGR--EFRDIRVPMLTKAGRIIQTEAHLFPR 222 Query: 549 PFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DI+E Q + K DF Sbjct: 223 LQNGEVIATQGIFQDITERLQAE-------KRELAAQQRLRDFF 259 >gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 822 Score = 346 bits (888), Expect = 8e-93, Method: Composition-based stats. Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 26/435 (5%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L+ + L + + + + +E + +I+E Sbjct: 110 LNEAHFKGALILYWSAAFEVDDLIAEFLNHAWVALRDVICLMQTQYDIEELSTRFNAIME 169 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 T GI ++ G N+ S++ G + +P + + EI Sbjct: 170 TTPQGIVFVDDSGKGAWVNKQASQILGVNND--KNEPLAISMAMTRLRSAAINQEEIQRE 227 Query: 520 DL-------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-------EWK 565 + + L+ + +LS+ DI+ + Sbjct: 228 GMKLFSSPNQSLLDWRWIFGDPVSLVLSVSCTPVVSENIRGRLWAFTDITSLHITNSQLS 287 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L +KIA++++ KS FLA +SHEIRTP+ +IG + ++ + + Sbjct: 288 ELNIELDEKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSLLISTSL----TDEQQD 343 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y I SG +L ++ND+LD SKIESGKM L +P SL + E L+ + A+EK + Sbjct: 344 YVETIRISGETLLSLINDILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKADEKGLD 403 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILR 740 + ++P I+ D+ ++QI +N++SN I FT G +I+IS + Sbjct: 404 LLYLIDADVPSEIIGDVTRLRQILVNLVSNGIKFTEKG-EILISIELLEKAGSIYTLQFS 462 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V+D+G+G+ + + + F Q+ +S + GTGLGL +++ +V+A G S + Sbjct: 463 VKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGTGLGLAISQRLVEAMQGSIRAESKYGE 522 Query: 801 GTLIEIIFPLYDTSH 815 G+ + ++ Sbjct: 523 GSCFIFTIKVEASAQ 537 >gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 583 Score = 346 bits (888), Expect = 8e-93, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 184/398 (46%), Gaps = 22/398 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ L ++ D + + +R G + NR G P +D++ + Sbjct: 155 KVEAQRARRRNPDLLPLIHQLGDFVVVHDRSGTAWALNRHFEHHLGLPPDDLMGRGLFDH 214 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-----SLRIIIKKLPFSSC-- 553 + + + + + G ++ + + I + Sbjct: 215 VHVLDRPAFLRAIADAAGGEGASNITIRLRGRGEDLSSVEPCFRWFDVCINRFENGHAKK 274 Query: 554 -----------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 DIS ++ + +L A+ AE + K FLA +SHE+RTPL A Sbjct: 275 REEAEADDQAMIIGVYRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNA 334 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFSE++ + + P + EYA I SG +L +VN +LD+SKI SG L +P+ Sbjct: 335 IIGFSEMLADPQLCPQDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPI 394 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L ++ ++++ A K I + A+ I+AD ++ KQI LN+LSNA+ FTP Sbjct: 395 VLAPLIASCCAMLRPQAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRR 454 Query: 723 GQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G++ I+ + +++ + V+DTG+G++ +L + +PF Q Q+ EGTGLGL + Sbjct: 455 GRVTIAVDCVVDCLDDIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSI 514 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + +V+ + G I S P +GT + + P P D Sbjct: 515 VRGLVELHGGTLLIESEPDQGTSMIVRLP--REGRPQD 550 >gi|220908645|ref|YP_002483956.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865256|gb|ACL45595.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 796 Score = 346 bits (888), Expect = 8e-93, Method: Composition-based stats. Identities = 109/559 (19%), Positives = 201/559 (35%), Gaps = 63/559 (11%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLT 352 + R + + + F+V Y N + + Sbjct: 118 RRIALRHAEIMRRRSEAAQEEVQATKQHLERVLCSIHDGFYVLDRHWRYTYVNDRYCEMA 177 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + L L + + L R+ I W R Sbjct: 178 GMQREAILGEN--LWQLFPD----GVDTLFDHHLQRAIDKQIPLQFEYFYGAWQRWYEHR 231 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---- 468 + P E D + + + + E + D I+ Sbjct: 232 VYPSPD----------GITVFVNEITDHKQVQVALRQSQERFRISQELSLDAFTILNSVR 281 Query: 469 NREGIIL-----STNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLR 522 ++ G I+ N +++ Y V+ ++ + L N S + ++ Sbjct: 282 DQTGTIVDFVWIYANPKAAEILQYSVDQLIGQRLLDLLPGNQTNSDLFDRYVRVVETGEP 341 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE- 581 +E ++ + + ++ DI++ KQ + + K A+ Sbjct: 342 HDIELAYNSEGISGWFRNMAVKL-----EDGVAIFFSDITDRKQAEAERERLLKEAQAAR 396 Query: 582 ------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + K +FLA +SHE+R+PL I+G+++++++QRF + E I+R+ Sbjct: 397 AEAEAANRIKDEFLAVLSHELRSPLNPILGWTQLMQSQRFDA---AKTTEALAAIERNAK 453 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 L +++DLLD++KI GKM+L+ PV+L + AI +V A K I + + A I Sbjct: 454 LQTQLIDDLLDVAKILRGKMSLNRVPVNLMFVIKAAIDIVMTAAVAKSIQLHSELAQ-IG 512 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------------------E 736 + D ++Q+ N+LSNAI FTP+GG++ I + Sbjct: 513 AVYGDAGRLQQVIWNLLSNAIKFTPAGGRVEIRLKRVEQQLYQPQPNSLPSIHPLPTTPY 572 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG G+ L + F Q S + G GLGL + + +V+A+ G S Sbjct: 573 AHITVSDTGKGINPNFLPYIFESFHQEDASITRKYGGLGLGLAIVRYLVEAHGGTVTAES 632 Query: 797 -TPAKGTLIEIIFPLYDTS 814 +G + PL D Sbjct: 633 PGEGQGATFTVCLPLLDAE 651 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 16/245 (6%), Positives = 61/245 (24%), Gaps = 27/245 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146 +D H +++ + G ++G L + +D ++H+ + +Q + Sbjct: 160 LDRHWRYTYVNDRYCEMAGMQREAILGENLWQL-FPDGVDTLFDHHLQRAIDKQIPLQFE 218 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P G F V+ + ++ ++F Sbjct: 219 YFY-----GAWQRWYEHRVYPSPD------GITVF--VNEITDHKQVQVALRQSQERFRI 265 Query: 207 LHEIKKGHSSVE-----------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 E+ ++ + + ++ +++ + Sbjct: 266 SQELSLDAFTILNSVRDQTGTIVDFVWIYANPKAAEILQYSVDQLIGQRLLDLLPGNQTN 325 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 ++ + + + N + ++ + + + A Sbjct: 326 SDLFDRYVRVVETGEPHDIELAYNSEGISGWFRNMAVKLEDGVAIFFSDITDRKQAEAER 385 Query: 316 DEGEN 320 + Sbjct: 386 ERLLK 390 Score = 41.2 bits (95), Expect = 0.77, Method: Composition-based stats. Identities = 25/255 (9%), Positives = 67/255 (26%), Gaps = 21/255 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKTTL 149 + + + + ++IG RL D+ + D + +++ Sbjct: 289 DFVWIYANPKAAEILQYSVDQLIGQRLLDLLPGNQTNSDLFDRYVRVVETGEPH-DIELA 347 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + EG + + R + G+ D + ++ Sbjct: 348 YNSEGISGWF-------------RNMAVKLEDGVAIFFSDITDRKQAEAERERLLKEAQA 394 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + K + + S + + + + D KT + + L Sbjct: 395 ARAEAEAANRIKDEFLAVLSHELRSPLNPILGWTQLMQSQRFDAAKTTEALAAIERNAKL 454 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 Q +++ + + + +L + ++A + L E Sbjct: 455 QTQLIDDLLDVAKILRGKM--SLNRVPVNLMFVIKAAIDIVMTAAVAKSIQLHSEL---A 509 Query: 330 PIPFFVYSHGNLFYA 344 I G L Sbjct: 510 QIGAVYGDAGRLQQV 524 >gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1499 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 119/696 (17%), Positives = 235/696 (33%), Gaps = 59/696 (8%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 R G +G+G RV P L F + +++ ++ + + Sbjct: 612 RTLGGRQGWGQFRC-RVARGPDRLPLHAQGTFQDITSLREAELALRDSEARL---NEAQF 667 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKT------EKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 RM + +L + A L PL+ E E T Sbjct: 668 IARMGSYSVNLRDGEAFWSPGLFRLLDLDPHDGPLVPGEAFRRHAPEAAPWFEAFLATPA 727 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD------------------- 327 + + S R L G + PE + Sbjct: 728 DRPESTERRSFPYITATGRRGFGRLHMMARHGADGLPEHIRGTFQDITPLHEAEQALRES 787 Query: 328 --KCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + G+ + + ++ +++ + + + Sbjct: 788 EARLQEAQQIARMGSFDLDLVHDRADYWSPGLYALLELDPSQPPPPPSRGSAIHSPERVG 847 Query: 383 PVMLYRSDRTCIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 R+ R + + T+ + + + G + Sbjct: 848 WFDELRTSRVPVPETVHSETVPYFTASGRKGVGHMQAVVQRGPDGTPVRMRGTFQDITRL 907 Query: 441 RINKRKMEIEVMQLCSILEA-TSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKP 496 ++ + +L LEA GI + + + + L L +P Sbjct: 908 HQTEQALRDSEARL---LEAQLIAGIGSFDFDIANDVATYWSTGLYALLEVEPGTPLPRP 964 Query: 497 FT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSC 553 + + + + + T + + + ++ ++++ P Sbjct: 965 LEGCHIYAPDYAAQFERMITEPADEPESVFWDNIPLRTAKGRRMMGQMKAVVQRGPDGRP 1024 Query: 554 YSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 DIS + + L AK+ AE + KS F+A +SHE+RTPL+ I+G +V Sbjct: 1025 VRARGAFQDISRLYEAEQALQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVAL 1084 Query: 612 NQRFG---PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ P + Y + I +L ++NDLLD S++E+G++ L L AV Sbjct: 1085 SRLNDTALPAHDNEQGHYLSMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAV 1144 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQII 726 S+A++ + + A K + + ++P R+ D ++QI +N+ NA+ FT + G + Sbjct: 1145 SDALAPLAVQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVH 1204 Query: 727 ISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + V+DTG G+T +L + F Q S R G+GLGL ++ Sbjct: 1205 VDVRRSAQCPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAIS 1264 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + +V G + STP +G+ P+ D P Sbjct: 1265 RHIVRLQGGDIGVNSTPGQGSRFWFTLPI-DKDAPQ 1299 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 35/410 (8%), Positives = 96/410 (23%), Gaps = 25/410 (6%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEY 246 + +R + ++ L E G + + + + L + ++ Sbjct: 396 RLEAETALRRSEARYRTLAENYPGGAIMLFDGDMRCLLADGLGLAGLLAPRQRIEGAIPS 455 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LS 304 V P + +L E T+ + + + L + + +S Sbjct: 456 DVLPPQVAL----PFEEQLQLALAGTEVTFTMAVGERIHEVRLRPLHEDRETGMPARCMS 511 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-- 362 + + + + G+ + + + + Sbjct: 512 VLQDITQREAARMALRHSEA---RLQEAQQIARMGSFELHMDTGAFVWSAGLYEMLGHDP 568 Query: 363 ---AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + + + + SD R+ + F Sbjct: 569 ALPPPPPAEVFAIHAPEELDWYHEHVAIMSDEPVTELQ-RVFPYRTLGGRQGWGQFRCRV 627 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTN 478 + G + R + + +L G +N R+G + Sbjct: 628 ARGPDRLPLHAQGTFQDITSLREAELALRDSEARLNEAQFIARMGSYSVNLRDGE-AFWS 686 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEK 537 + +L D P F + + T + T + Sbjct: 687 PGLFRLLDLDPHDGPLVPGEAFRRHAPEAAPWFEAFLATPADRPESTERRSFPYITATGR 746 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 R+ + + T DI+ + + L ++ ++ Sbjct: 747 RGFGRLHMMARHGADGLPEHIRGTFQDITPLHEAEQALRESEARLQEAQQ 796 >gi|193214405|ref|YP_001995604.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] gi|193087882|gb|ACF13157.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC 35110] Length = 1487 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 110/758 (14%), Positives = 239/758 (31%), Gaps = 70/758 (9%) Query: 99 SEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155 +E + IG + + + + + + ++ T + + T Sbjct: 630 NERWAEIIGYTLEELQPITSQTRRSLVHPEDLSHSAILLKEHFKKRTSQYECEVRMKHKT 689 Query: 156 NLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 +V + + + NR R G + + ++ + + + Sbjct: 690 GEWVWVLERGKVMEWDENR--LPIRMAGTLLDISLRKLTEETLRKNEHFLQTITDCTPSF 747 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---------HKDDVLKTEKYPLLTSE 265 + +P T A D ++ P L ++ Sbjct: 748 IYIYDLIEGRNFWVNPTHQQIFGEIFYKDTSTLAFHDIMERMHPDDKSKMSKCIPSLQNK 807 Query: 266 ESSLPEQEDFHTINLNQ--YTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSAYFDEG 318 + +F I+ + + + N K + E Sbjct: 808 PDGEIFEVEFRMIDDDGVCHWFDDKVSVFERNEKGEITKIIGAGIDVSARKRAETAQQES 867 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ++ P+ + ++ + + + + + G+ L+A D Sbjct: 868 RAQLLSVLNNSPLQIWAFNGEEYLFLSEEWYRYSGQQRT----PHPGIDIWLEAVPTEDL 923 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 V +A ++ N E G + Sbjct: 924 GRAGAVWQKAW--AEKSAHDNFFRLRNFNGEYRYFQCRAVPIFNHDGEFQYFIGYNVDIS 981 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + ++ + ++E + + I + G I N +KL GY E++L K Sbjct: 982 DRIRAEEELR----KFSKVVEQSPSCVLITDLNGNIEYVNPFFTKLTGYSAEEVLGKNPK 1037 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555 + + L + ++ K +L + I L Y Sbjct: 1038 ILKSGEMNETVYDTLWKTITAG--GIWNGELHNQKKNGELFWEEVSICPLFDEEGYITHY 1095 Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+ K+ + +L ++K+ V+H+ LT I+ SE+ + Sbjct: 1096 FAVKQDITSKKKIEEQLRQSQKM-----EAIGQLAGGVAHDFNNILTVILANSEIALAKL 1150 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + + ++ N + LL S+ K L + + L++ + + Sbjct: 1151 ---KDQPSAQDNIQQVKKAANRAASLTRQLLAFSR----KQILEPKILDLNDLIQNLQKM 1203 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730 + + I + +A N+ +I AD ++Q+ +N+ NA PSGG +II T Sbjct: 1204 L-ARLIGEDISLIIKYAPNLKQIKADPGQIEQVIVNLAVNARDAMPSGGNLIIETENAHV 1262 Query: 731 ----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +E V++ + DTG+GM L++ +PF + +GTGLGL Sbjct: 1263 DESFFKHHNCLDHSEFVLMTITDTGLGMDKATLKRIFEPFFTTKG----QSKGTGLGLAT 1318 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPH 817 ++ + G ++S P GT+ ++ P + + + P Sbjct: 1319 VYGIIRQSGGLIQVYSEPEMGTVFKVYLPAISEKTKPE 1356 Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 62/523 (11%), Positives = 138/523 (26%), Gaps = 44/523 (8%) Query: 89 IDAHGYLKEISEELPK-------TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 +DA+ + ++ + +G ++ D S P+ L+ Sbjct: 492 LDANLNVIRVNRSMENRHANQMPLVGKKCYEA----YRDRSTPC---PHCPTMKALQTGK 544 Query: 142 TWYGKTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 T P G I+L A PI S + +G + + + Sbjct: 545 PHTD-TVQVPHNKIGETGPSWIELRAFPIKSDDGNITGVIEY--IKDITLQKQIEEQHLI 601 Query: 200 LDKKFSHLH----------EIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYY 247 +++ + + + +I + P + E Sbjct: 602 SEERLNLAVLGAGVGLWDWHVTSDELITNERWAEIIGYTLEELQPITSQTRRSLVHPEDL 661 Query: 248 AHKDDVLKTEKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 +H +LK + E + + + + + K + + + + L Sbjct: 662 SHSAILLKEHFKKRTSQYECEVRMKHKTGEWVWVLERGKVMEWDENRLPIRMAGTLLDIS 721 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTK---YKSVDDIE 361 + E+ D P ++Y G F+ NP+ + YK + Sbjct: 722 LRKLTEETLRKNEHFLQTITDCTPSFIYIYDLIEGRNFWVNPTHQQIFGEIFYKDTSTLA 781 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + K S + P + + D R+ I + + + Sbjct: 782 FHDIMERMHPDDK-SKMSKCIPSLQNKPDGEIFEVEFRM--IDDDGVCHWFDDKVSVFER 838 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 N+ E G + + + + QL S+L + I N E L + Sbjct: 839 NEKGEITKIIGAGIDVSARKRAETAQQESRAQLLSVLNNSPLQIWAFNGE-EYLFLSEEW 897 Query: 482 SKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + G + + + E + Sbjct: 898 YRYSGQQRTPHPGIDIWLEAVPTEDLGRAGAVWQKAWAEKSAHDNFFRLRNFNGEYRYFQ 957 Query: 541 LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 R + + DIS+ + + +L K+ E+ Sbjct: 958 CRAVPIFNHDGEFQYFIGYNVDISDRIRAEEELRKFSKVVEQS 1000 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 58/546 (10%), Positives = 131/546 (23%), Gaps = 72/546 (13%) Query: 90 DAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D HG L E +++ + G ++ RL D + + LK++ + + + Sbjct: 209 DVHGALLEANQKAIEMFGYENEAEIKTRRLIDHHPSIENEFLESTCAALKKEGLVHLEIS 268 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G P +++A I +++ + IV A + L Sbjct: 269 ALRKDG--AMFPAEISATLIKIDEKKYIQW----IVRDLVAKKQADAALLENAAHYQALF 322 Query: 209 EIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E E E + F + + + E ++K Sbjct: 323 ENSPIPLWEEDCSELVEYFRHLTALGISDIPTYLEENPEAVYQSISLVKIVDMNRAALAL 382 Query: 267 SSLPEQEDF----------------------------------------HTINLNQYTKK 286 +E + Sbjct: 383 HRAASKEILTPVFPSILVNTSIEAIKEILISIAQKKPKSNIDVKITTLDGEDKEILLSWD 442 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345 G Q + + E + + V N+ N Sbjct: 443 TVPGYEQTLKRVFVSTIDITPLKQAQTALQTQERFLDDVFNSIQDGISVLDANLNVIRVN 502 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 S ++ + + + L + I Sbjct: 503 RSMEN--RHANQMPLVGKKCYEA-YRDRSTPCPHCPTMKALQTGKPHTDTVQVPHNKIGE 559 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + P + + + + + + I +L + G+ Sbjct: 560 TGPSWIELRAFPIKSDD--GNITGVIEYIKDITLQKQIEEQHLISEERLNLAVLGAGVGL 617 Query: 466 AIINREGIILS----TNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILS 518 + + S TN +++ GY +E++ + + S L E Sbjct: 618 W----DWHVTSDELITNERWAEIIGYTLEELQPITSQTRRSLVHPEDLSHSAILLKEHFK 673 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSH 573 Q E K + + + K + + + T+ DIS K + L Sbjct: 674 KRTSQ-YECEVRMKHKTGEWVWVLERGKVMEWDENRLPIRMAGTLLDISLRKLTEETLRK 732 Query: 574 AKKIAE 579 + + Sbjct: 733 NEHFLQ 738 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 15/184 (8%), Positives = 47/184 (25%), Gaps = 6/184 (3%) Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 I + + + + ++ + L + + Sbjct: 427 ITTLDGEDKEILLSWDTVPGYEQTLKRVFVSTIDITPLKQAQTALQTQERFLDDVFNSIQ 486 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 DGI++++ ++ NR++ ++ K + + + L Sbjct: 487 DGISVLDANLNVIRVNRSMENR-HANQMPLVGKKCYEAYRDRSTPCPHCPTMKALQTGKP 545 Query: 523 QTLEKIT-LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 T E + + + + DI+ KQ + + +++ Sbjct: 546 HTDTVQVPHNKIGETGPSWIELRAFPIKSDDGNITGVIEYIKDITLQKQIEEQHLISEER 605 Query: 578 AEKE 581 Sbjct: 606 LNLA 609 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 6/160 (3%) Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + ++ + M+ + S+ ++D I I + G +L N+ + Sbjct: 164 AGDIGFALYSIEMELKATQATKAMKEREEKYRSLFHFSTDAIVIYDVHGALLEANQKAIE 223 Query: 484 LFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-- 540 +FGY E +I + + + + K+ + Sbjct: 224 MFGYENEAEIKTRRLIDHHPSIENEFLESTCAALKKEG---LVHLEISALRKDGAMFPAE 280 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + K+ + D+ KQ L + Sbjct: 281 ISATLIKIDEKKYIQWIVRDLVAKKQADAALLENAAHYQA 320 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 37/114 (32%), Gaps = 5/114 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147 D +G ++ ++ K G A +++G + S ++ + + + W G+ Sbjct: 1007 TDLNGNIEYVNPFFTKLTGYSAEEVLGKNPKILKSGEMNETVYDTLWKTITAGGIWNGEL 1066 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 G +++ P++ + + F + ++ Sbjct: 1067 HNQKKNGELF--WEEVSICPLFDEEGYITHY--FAVKQDITSKKKIEEQLRQSQ 1116 >gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus] Length = 1364 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 104/535 (19%), Positives = 201/535 (37%), Gaps = 52/535 (9%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 ++ ++ E + P+ + + G + + + T + L Sbjct: 446 QKIAEQIEQNEKQFEYITNFMPVMVWTTTPDGMHDWFSKRWYDYTGLTVDKSLGEGWRLP 505 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + R M + Sbjct: 506 --FHPDDMH--ATAERWFHSLKTGDEYNTEYRCQRF---DGQWRWMLGRAVPFYDDAGRI 558 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------LSTNRAV 481 + G + D + +++ QL +++ + +I+R + + N Sbjct: 559 VKWFGTCTDIHDLVLARQEARQTREQLQQVIQHAKIVLWVIDRNNRVKVLEGDIDANE-- 616 Query: 482 SKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTL---EKITLGSTKEE 536 + +L K E + EIL + ++ Sbjct: 617 ----HLSKDQLLGKDVYDVFEFTDNNRERWRGPIQEILQGKQSDEIVNGGYMSENRYYRT 672 Query: 537 KLLSLRIIIKKLPF------SSCYSLTMHDISEWKQEKN----------KLSHAKKIAEK 580 +L+ L + + DI+E ++ + +L + A++ Sbjct: 673 RLVPL-MSTSRTAGIESQAFVDGVIGVSMDITELREREEQLKEQEKENSRLLANEAAAKE 731 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 S KS FLA +SHEIRTP+ +IG SE++ + N E A I RS N +L + Sbjct: 732 ASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMDL----NEEQKECAENIHRSANSLLTV 787 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRI 697 +ND+LD SK+ESG++++ SL + + ++ AN K + ++ + + R+ Sbjct: 788 INDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEYQSLIQDEVQSDLRV 847 Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELE 754 + D ++QI N+L+N+I FT G Q+ +S +H + E V + DTG+G+ + Sbjct: 848 IGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFSIVDTGIGIEEEVRK 907 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q +S R GTGLGL ++K +V+ G+ ++ S +GT P Sbjct: 908 RLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 962 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 40/157 (25%), Gaps = 6/157 (3%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +E F + V W G S+ G K +G + Sbjct: 454 QNEKQFEYITNFMPV-MVWTTTPDGMHDWFSKRWYDYTGLTVDKSLGEGWRLPFHPDDMH 512 Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 LK + + + +G + + A+P Y + FG Sbjct: 513 ATAERWFHSLKTGDEYNTEYRCQRFDG--QWRWMLGRAVPFYDDAGRIV--KWFGTCTDI 568 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 R ++ ++ + + K V + Sbjct: 569 HDLVLARQEARQTREQLQQVIQHAKIVLWVIDRNNRV 605 >gi|296120393|ref|YP_003628171.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] gi|296012733|gb|ADG65972.1| PAS sensor protein [Planctomyces limnophilus DSM 3776] Length = 1561 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 111/807 (13%), Positives = 254/807 (31%), Gaps = 67/807 (8%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLK 96 +++ + H Q Q+ + E + W++D Sbjct: 644 RARATSDQHGRPIQFVGVTQDITARKQAELARLEVEERYRLAILATNDLIWDLDPVAGTV 703 Query: 97 EISEELPKTIGNYAFKMIGMRLC-DVSDILHIDP-NNHIGDLLKRQNT-WYGKTTLWPIE 153 SE+ T+G ++ D + + + T W + Sbjct: 704 AWSEQYAATLGRTPESSDSLQWWIDRIHPADRERTARSLSAAVDGTATYWTADYEFLRAD 763 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G V + +R+ R G + +R + + E Sbjct: 764 G----VWASIHDRAYIARDAAGHARRVVGAMQDVTDRKRAETEVRRTAELLRAVAEGTSD 819 Query: 214 HSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLP 270 V+ + +V + + + + Sbjct: 820 AVFVKDRDGKYLLANQAACQFMGKPLEQVLGRDDSEWFDAEGARLVLEVDREVMRSGLVR 879 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 E+ T N T ++ + + + L +VD Sbjct: 880 TSEETLTANYVTRTYLASKAPYRDELGNVIGIIGISRDITARKEAERMLRLNQFSVDHAV 939 Query: 331 IPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYR 388 ++ + + Y N + Y + + + + Sbjct: 940 DSIFWINASSEILYVNNAACRTLGYTRDEMLGKTVPDIDPNFLPEAWPAHWEELRCR--- 996 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + + + + + Q+ I + + + + +M Sbjct: 997 -----GSFTFESDHVTKDGRT---LKTEVTVNYLQYEGQEYNCAIMRDISERKQAELEMR 1048 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-S 507 + ++ + LE+T+DGI +++ EG +L NR ++ +P E I + + + Sbjct: 1049 QSLSRMRATLESTADGILVVDLEGRVLDYNRRFISIWRFPEEMIAEANKSDIIASSDQHQ 1108 Query: 508 VMNHYLTEILSLDLRQTLEKITLGST----------KEEKLLSLRIIIKKLPFSS-CYSL 556 + L ++ + + + K+ +++ + + L Sbjct: 1109 AVQKMLAQLKDPEGFVRRVQEMYQNREESSFDVLEFKDGRIVERFSQPQWMDGQPVGRVL 1168 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+SE ++ + +L ++K+ F ++H+ LT I + E++ +Q+ Sbjct: 1169 SFRDVSEQRKLEEQLRQSQKM-----EAVGQFAGGIAHDFNNLLTVINCYCELLLDQKSQ 1223 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P + E +I G + LLD S+ + + + L++ + + L++ Sbjct: 1224 PQN---WRESVQHIRDEGLRAAQLTKQLLDFSR----RSHFQPRVIHLNDVIEGSQKLLR 1276 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----- 731 +RI + +P I AD + Q+ +N++ NA P+GG++ I T+ Sbjct: 1277 RLI-GERIQLILHLDPLLPAIKADTTHLDQVLMNLVVNARDAMPAGGRLTIRTSRLSPQD 1335 Query: 732 ---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 V L V DTG+GM+ + +PF G G+GLGL + Sbjct: 1336 ARQFLTNISLETPYVQLEVADTGIGMSADVQARIFEPFFTTK----EIGSGSGLGLAVVH 1391 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + G+ ++ + P GT ++FP Sbjct: 1392 GIMQQHDGQIHVTTEPGVGTTFRLLFP 1418 Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats. Identities = 60/542 (11%), Positives = 145/542 (26%), Gaps = 27/542 (4%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE F + W G L ++ + + G ++ G V + Sbjct: 423 ESEQRFRELADAIP-QIVWVAALDGGLTYLNAKATEYTGVGMDQLTGWSWEQVIHPEDVP 481 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 Q +PI + R +G Sbjct: 482 NAIERWTATLEQELPRDIELRIRQTDGAYR-WHISRQVPIRDASGAIV--RWYGTCTDID 538 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVS 241 +A ++ + I S + + + P + ++ Sbjct: 539 DLKRTQAALQQSESTLEEAMRIGDMGSWIIDLVQNRATWSDEGFRLLGYVPGVDQPSQEL 598 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 L Y D + + ++SL + F + + + Sbjct: 599 FLNGVYPADRDTV-RHDLANAIATQTSLNSEFRFVRPDGQLRWLHSRARATSDQHGRPIQ 657 Query: 302 YLSHRNHPSLSAYFDEGENLTPET--VDKCPIPFFVYSHG---NLFYANPSFLLLTKYKS 356 ++ + + E + ++ + + Sbjct: 658 FVGVTQDITARKQAELARLEVEERYRLAILATNDLIWDLDPVAGTVAWSEQYAATLGRTP 717 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + + +D + D T +A ++ + ++ Sbjct: 718 ESSDSLQWWIDRIH----PADRERTARSLSAAVDGTATYWTADYEFLRADG-VWASIHDR 772 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + G + D + + ++ L ++ E TSD + + +R+G L Sbjct: 773 AYIARDAAGHARRVVGAMQDVTDRKRAETEVRRTAELLRAVAEGTSDAVFVKDRDGKYLL 832 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N+A + G P+E +L + + + + ++ E++ L +T E TL + Sbjct: 833 ANQAACQFMGKPLEQVLGRDDSEWFDAEGARLVLEVDREVMRSGLVRTSE-ETLTANYVT 891 Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + + DI+ K+ + L + + S F S Sbjct: 892 RTYLASKAPYRDELGNVIGIIGISRDITARKEAERMLRLNQFSVDHAVD--SIFWINASS 949 Query: 595 EI 596 EI Sbjct: 950 EI 951 Score = 131 bits (329), Expect = 6e-28, Method: Composition-based stats. Identities = 42/532 (7%), Positives = 125/532 (23%), Gaps = 48/532 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148 D+ G + K +++ D + + D I ++ G Sbjct: 38 DSSGRYLFCNAAGTKLTNRTREQILDQ---DDTAVFGSDTA-RIMRAQDQRVMQSGLPAA 93 Query: 149 --LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR------------------ 188 G NL I + P ++ G I Sbjct: 94 ETHVVQIGDNLR-SIQMTTKPYQDQHGTVQGV--IVIARDFADAAMGNRSHTVGVAAANH 150 Query: 189 -VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------ 241 + + +++ + I + S V + L + Sbjct: 151 LERSGAEQALRESERQLADAQRIARIGSWVWEPSSGKVWWSRGVFALFGVDPQVVQPSFQ 210 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + + D + + + + + ++ Sbjct: 211 AFLQLLHPDDLPTAVARVDAMLAGADRFEDDLRIIRPDGQMIWLHSRAVATRDADGNILR 270 Query: 302 YLSHRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYK 355 + A + + P+ +V+ + Y+N + + Sbjct: 271 VEGTDQDITARKLAAAEVQASQKFVKAVAETSPLTIYVFDLQQQSITYSNYYLMRDLGFT 330 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + I+ + N + + + A + ++ Sbjct: 331 P-EAIQGRSWAELAELVHPIDFANVTTLLQRWDTVDDQQVLLAEYRLQDVHGNWRWFVSR 389 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + G + + + ++ + + + +A + + +G + Sbjct: 390 DRVFERTPDGRVSQIIGTAEDITERKRVEQSLRESEQRFRELADAIPQIVWVAALDGGLT 449 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N ++ G ++ + + + T L +L + + + Sbjct: 450 YLNAKATEYTGVGMDQLTGWSWEQVIHPEDVPNAIERWTATLEQELPRDI--ELRIRQTD 507 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + +S + T DI + K+ + L ++ E+ Sbjct: 508 GAYRWHISRQVPIRDASGAIVRWYGTCTDIDDLKRTQAALQQSESTLEEAMR 559 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 51/443 (11%), Positives = 119/443 (26%), Gaps = 41/443 (9%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKV 240 +++R D A L + + E V+ + R + ++ Sbjct: 2 TANLDREDVRNSAPSLPLLDLLAAVSEASLDALFVKDSSGRYLFCNAAGTKLTNRTREQI 61 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED--------FHTINLNQYTKKQYFGTL 292 + D + + +S LP E +I + + GT+ Sbjct: 62 LDQDDTAVFGSDTARIMRAQDQRVMQSGLPAAETHVVQIGDNLRSIQMTTKPYQDQHGTV 121 Query: 293 QNNSKESF----------------EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 Q + +H E E + I +V+ Sbjct: 122 QGVIVIARDFADAAMGNRSHTVGVAAANHLERSGAEQALRESERQLADAQRIARIGSWVW 181 Query: 337 SHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + + + L LL L A ML +DR Sbjct: 182 EPSSGKVWWSRGVFALFGVDPQVVQPSFQAFLQLLHPDDLPTAVARVDAMLAGADR---- 237 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 L I+ + + + + + G + + ++ +++ + Sbjct: 238 FEDDLRIIRPDG-QMIWLHSRAVATRDADGNILRVEGTDQDITARKLAAAEVQASQKFVK 296 Query: 456 SILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVF---LEQNTPSVMNH 511 ++ E + I + + + I +N + + G+ E I + + + + + Sbjct: 297 AVAETSPLTIYVFDLQQQSITYSNYYLMRDLGFTPEAIQGRSWAELAELVHPIDFANVTT 356 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-----IKKLPFSSCYSLTMHDISEWKQ 566 L ++D +Q L S T DI+E K+ Sbjct: 357 LLQRWDTVDDQQVLLAEYRLQDVHGNWRWFVSRDRVFERTPDGRVSQIIGTAEDITERKR 416 Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589 + L +++ + + + Sbjct: 417 VEQSLRESEQRFRELADAIPQIV 439 >gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 576 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 121/529 (22%), Positives = 211/529 (39%), Gaps = 50/529 (9%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTARTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L EPV LDE +S ++ Sbjct: 345 MVGNMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A +RI ++ + + D R KQI N+L+NA+ F+ GG + ++ S Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 FARTGVIEGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 EGTGLGL + K + + + G + S G + P+ P +C Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568 Score = 45.4 bits (106), Expect = 0.040, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G + R Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167 Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244 + + L E + + I R ++++ Sbjct: 168 EEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTARTRDELIGAP 227 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + SE + + + T + ++ + Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329 + F+ ++ Sbjct: 288 AARDVTERKRFERTLEEKNVELEHA 312 >gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 858 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 112/447 (25%), Positives = 184/447 (41%), Gaps = 22/447 (4%) Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 S+ A L LA T + + ++ +E R+ Sbjct: 279 EYARRISNGQL---EATLDVYGQGELGVLANTLRSMARIVKQDQDRLNRLVEERTDQLRL 335 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ ++ E L +IL D I + GI N+A G ++I+ K + Sbjct: 336 SQERLLKESALLKTILNTVPDLIFYKDMNGIYKGCNKAFGAFIGKSEQEIIGKDDVELFQ 395 Query: 503 ---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555 + L + E+ L + K + L I Sbjct: 396 LSGNAAQKFIEDDLQVMRGKLDTLIREEEVLY--PDGKRIYLETIKTLYYSEDNAPFGMV 453 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +I K+ + + A + A + S KS+F+AR+SHEIRTPL AIIG + ++K Sbjct: 454 GISRNIQLRKETEKAYAEAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYLLKQSCT 513 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P+ Y ++ S +L I+ND+LD SKIESGK+ + +S+++ V + +S+ Sbjct: 514 DPV----QESYLRKMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVRDVVSIN 569 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733 + A T IP +L D + QI LN++SNA+ F+ G +I + Sbjct: 570 EPKAKAANESFETHIDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEVLCERVH 629 Query: 734 NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 E V VRD G+GM+ +L+K PF Q S + GTGLGL + K +V+ G+ Sbjct: 630 GENVTLLFSVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICKMLVELMHGE 689 Query: 792 FYIFSTPAKGTLIEIIFPLY--DTSHP 816 + + G+ L D + P Sbjct: 690 IWAVTEEGVGSTFFFRLQLEKKDAATP 716 >gi|138894502|ref|YP_001124955.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196247897|ref|ZP_03146599.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. G11MC16] gi|134266015|gb|ABO66210.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196212681|gb|EDY07438.1| signal transduction histidine kinase, nitrogen specific, NtrB [Geobacillus sp. G11MC16] Length = 738 Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats. Identities = 106/739 (14%), Positives = 236/739 (31%), Gaps = 66/739 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 +G +++E K F +IG +++ D +L++ ++ + + Sbjct: 51 NGEFVDVNEAACKLFEMDKFDLIGRSFSSFLELVPPDILLFQRSMLQKFGSFSDELLIKL 110 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + +V + EF ++ + F + Sbjct: 111 PDDKVKHVEFSMK----KDVFNEFD----LVMMRDVSAHKALERERIIHEFLFRDVFNRA 162 Query: 212 KGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + E K K+ +L+ + L +E Sbjct: 163 VDGIVIFDEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECADEFARLLSEVKEKGT 222 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDK 328 + E + T S ++ + E ++ Sbjct: 223 AKGELSLVRLDGTVKMFELTATSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ 282 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSV--------DDIEIAGGLSTLLDAPKLSDNN 379 ++ G + ANP+ + D ++ + + Sbjct: 283 AHEAIIIWDDFGYILNANPAASRTFELPLNLLVRRNLLDFVQYGDEKVKRIFSEFRRKGE 342 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + + + I + Sbjct: 343 IRDELTFHMPNGEDKQLEFTMKKGAIDG---------------------YHLTIFRNVSE 381 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R +R++ + SI + DGI + + + I+ N + F E +L + Sbjct: 382 RRKIERELRESEQKFRSIFDHAMDGILLWDEKHRIIDANPIACEFFSATKEALLGQTVME 441 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + + +N + ++ +EK++ + + +P + Sbjct: 442 LVPERARRQLNKLFVQCERAGEAS--GEVEFSDEGKEKIVEFSLKKEVIPGVG--MMRFR 497 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E K+ + +L + + + A ++HEIR P+TA+ GF ++++ G Sbjct: 498 DVTERKEMELQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSVGG--- 549 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y Y N I + I+ + L ++K ++ + + + + + + I L+ A Sbjct: 550 --DYSMYFNVIMSELKRIESIITEFLVLAKPQAVQYKQN----DICKIMQDTIDLISAQA 603 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I F +P + + +KQ+ +NIL NAI P GG I + T V + Sbjct: 604 MMHNVQIIADFERGLPPVYCEPNQLKQVFINILKNAIEVMPKGGDITVRIART-GRHVRI 662 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + D G G+ +++K +PF + GTGLGL ++ +++ + GK + S Sbjct: 663 SITDQGCGIPKDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHRGKIDVESEVG 716 Query: 800 KGTLIEIIFPLYDTSHPHD 818 GT I P+ T + Sbjct: 717 VGTTFHITLPIERTEREDN 735 Score = 71.2 bits (173), Expect = 8e-10, Method: Composition-based stats. Identities = 33/368 (8%), Positives = 92/368 (25%), Gaps = 32/368 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G +++ ++ K++ + D + +K + T G+ +L Sbjct: 170 DEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECADEFARLLSEVKEKGTAKGELSL 229 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207 ++GT + + + + GF I+ + ++ +++F + Sbjct: 230 VRLDGTVKMFELTATS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E + + I + +L ++ + D+ +K Sbjct: 280 FEQAHEAIIIWDDFGYILNANPAASRTFELPLNLLVRRNLLDFVQYGDEKVKRIFSEFRR 339 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + ++ FH N + + + + + E E Sbjct: 340 KGE--IRDELTFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELRESEQKFR 397 Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D ++ + ANP + L + Sbjct: 398 SIFDHAMDGILLWDEKHRIIDANPIACEFFSATKEALLGQTVME---LVPERARRQLNKL 454 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 V R+ + + F + + + + Sbjct: 455 FVQCERAGEASGEVEF------SDEGKEKIVEFSL----KKEVIPGVGMMRFRDVTERKE 504 Query: 443 NKRKMEIE 450 + ++ Sbjct: 505 MELQLRKS 512 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 3/142 (2%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + R+++ + I E + D I I+N+ G + N A KLF D++ Sbjct: 14 TQDVRLLEEENRRLKERLNSYSIIFERSLDAIVILNKNGEFVDVNEAACKLFEMDKFDLI 73 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + F+ FLE P ++ + + + L ++K+ + +KK F+ Sbjct: 74 GRSFSSFLELVPPDILLFQRSMLQKFG---SFSDELLIKLPDDKVKHVEFSMKKDVFNEF 130 Query: 554 YSLTMHDISEWKQEKNKLSHAK 575 + M D+S K + + + Sbjct: 131 DLVMMRDVSAHKALERERIIHE 152 >gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. FRC-32] Length = 591 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 98/410 (23%), Positives = 183/410 (44%), Gaps = 22/410 (5%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSIL 458 L TI + E + + + + + E +L +IL Sbjct: 198 LRTISAIAARIGKGEYGLRVPRESSDEVGELAVVMNDMSERIEAQLSSIMAERNRLDTIL 257 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 +G+ + + +GII N A K+F ED+ +P +E + ++ +I++ Sbjct: 258 RGMGEGLMVTDAQGIITLVNPAFRKVFSVD-EDVEGRPL---IEVSRQPALHAAYRKIMA 313 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 + + E G K+ +L+ + + + HDIS+ K+ Sbjct: 314 DGIERQEEMSLNG-EKDGNILTHWVPLIDGNRLTGVVAVFHDISDLKRL----------- 361 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++ + DF+A VSHE+RTP++ I G++E + R + I + Sbjct: 362 ---AATRRDFVANVSHELRTPVSVIQGYAETLLAGALES-DPDRARRFIQVIHNHAERLS 417 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ DLL +S++ESGK+ L P++L AV +A+SL+ A +K I + T +L Sbjct: 418 ALIADLLTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVL 477 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD + Q+ +N+L NAI +TP G++ + T E + + V DTG+G+ +L + + Sbjct: 478 ADKGKLDQVLVNLLDNAIKYTPGNGKVTV-TAEDEAEMLKISVTDTGLGIPAKDLPRIFE 536 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F ++ ++ GTGLGL + K +V ++ G + S P +G+ Sbjct: 537 RFYRVDEARSRDKGGTGLGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTL 586 Score = 43.1 bits (100), Expect = 0.20, Method: Composition-based stats. Identities = 39/322 (12%), Positives = 82/322 (25%), Gaps = 22/322 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-T 147 DA G + ++ K + + G L +VS + + ++ + + Sbjct: 267 TDAQGIITLVNPAFRKVF-SVDEDVEGRPLIEVSRQPAL--HAAYRKIMADGIERQEEMS 323 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G L + L G R G+V V +D + L +++ Sbjct: 324 LNGEKDGNILTHWVPL-----------IDGNRLTGVVAVFHDISDLKRLAATRRDFVANV 372 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + SV + + ++ + + + L LLT E Sbjct: 373 SHELRTPVSVIQGYAETL---LAGALESDPDRARRFIQVIHNHAERLSALIADLLTLSEL 429 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + KQ L + + L N + + L V+ Sbjct: 430 ESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVLADKGKLDQVLVN 489 Query: 328 KCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + +G + + K D + Sbjct: 490 LLDNAIKYTPGNGKVTVTAEDEAEMLKISVTDTGLGIPAKD---LPRIFERFYRVDEARS 546 Query: 387 YRSDRTCIAASARLHTIQWNRE 408 T + S H +Q + Sbjct: 547 RDKGGTGLGLSIVKHIVQSHGG 568 >gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris TIE-1] Length = 610 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 182/386 (47%), Gaps = 20/386 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + +E + + SD I+ NR G + + A L G PV + + Sbjct: 197 ALLNVEEERYRLLARNMSDVISRHNRNGAVRFISPAAENLLGTPVARLAEHGLFDRVHVA 256 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLG---STKEEK-----LLSLRIIIKKLP------- 549 +++ ++E + + + + + + L Sbjct: 257 DRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTA 316 Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + M DI+E K + L A+ A++ + KS FLA +SHE+RTPL AIIG Sbjct: 317 ASNAGETEVVAVMRDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIG 376 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS++I LG R EYA I+ SG +L +VN +LD+SK+ESG + EP + Sbjct: 377 FSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPR 436 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 A+ +L+ L A + I + T N+P ++ D R+ KQI LN++SNAI FT GG + Sbjct: 437 PALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTV 496 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S ++LRV DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V Sbjct: 497 TVSAAVE-GTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLV 555 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811 + G+ + S GT + + PL Sbjct: 556 RMHGGEIEVQSQIDCGTTVTVSLPLA 581 >gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 576 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +++ Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A + I ++ + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 ASQAGLIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + K + + + G + S G + P+ Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +++ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + T + L S + + E E E Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427 Score = 44.6 bits (104), Expect = 0.062, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312 >gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus DK 1622] Length = 671 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 95/529 (17%), Positives = 197/529 (37%), Gaps = 34/529 (6%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353 + + + R + T + P + G+ YAN + T Sbjct: 156 EQQIQRQAVLLRQREREALERQSELRHLRLT-ESLPEVMWAARSDGSFTYANRAARDYTG 214 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 ++ + + L P + V R + R ++ Sbjct: 215 IQAEQPLSLNTFLE--FVHPVDREAMRAAWVQAIRMGQRVE----REFRLRRFDGVYRWH 268 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-G 472 + ++ + + D R + + + + L+AT D + + + + Sbjct: 269 LARAVPERDENGLLAGWIAVATDIDDKRRAEEAL----GRFKATLDATLDCVLMFSPDSL 324 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + N +K ++++ + L ++S L T Sbjct: 325 TLTYANAGAAKQLASSTDELVGLSVLEVEGAFDEAGFRKLLAPLVSGTLPS-QTYSTSHR 383 Query: 533 TKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 ++ + + ++++ + + DI+E ++ + L S K FL Sbjct: 384 RRDGSEVPVEVVLQYVAADGGPGRFISVARDITERQRAETAL-------RLASEAKDSFL 436 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A SHE+RTPL A G + + + G + I+R + + +V DLLDIS+ Sbjct: 437 AAASHELRTPLAAAKGHA-HLALLKLGGETEAGPGKSLKIINRQIDRMAKLVEDLLDISR 495 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 +++G+++L E L V E + + + I + A++ D + Q+ Sbjct: 496 LQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVE---ASDQLEGTWDRGRLDQVLT 552 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+LSNA+ ++P GG + + +E V L V DTGVG+ + + FG+ S Sbjct: 553 NLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGVGIPKEKQGLIFERFGRAHGS--- 609 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFS--TPAKGTLIEIIFPLYDTSHP 816 + G GLGL +++ +V+ + G+ ++ S +G+ + P +T P Sbjct: 610 KYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGSTFHVWLP-RETEAP 657 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 62/251 (24%), Gaps = 17/251 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W + G + G A + + + + + + ++ Sbjct: 193 MWAARSDGSFTYANRAARDYTGIQAEQPLSLNTFLEFVHPVDREAMRAAWVQAIRMGQRV 252 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L +G +Y A+P N +G+ + + Sbjct: 253 EREFRLRRFDG--VYRWHLARAVPERDENGLLAGW--IAVATDIDDKRRAEEAL----GR 304 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTE 257 F + + + + ++ + +S L A + + Sbjct: 305 FKATLDATLDCVLMFSPDSLTLTYANAGAAKQLASSTDELVGLSVLEVEGAFDEAGFRKL 364 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 PL++ S + ++ + + + ++S + + Sbjct: 365 LAPLVSGTLPSQTYSTSHRRRDGSEVPVEVVLQYVAADGGP-GRFISVARDITERQRAET 423 Query: 318 GENLTPETVDK 328 L E D Sbjct: 424 ALRLASEAKDS 434 Score = 41.9 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 23/238 (9%), Positives = 60/238 (25%), Gaps = 14/238 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWP 151 L + K + + +++G+ + +V + L T+ Sbjct: 325 TLTYANAGAAKQLASSTDELVGLSVLEVEGAFDEAGFRKLLAPLVSGTLPSQTYSTSHRR 384 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ + V + L + F + + E K Sbjct: 385 RDGSEVPVEVVLQYVAADGGPGRF-----ISVARDITERQRAETALR-------LASEAK 432 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + + K+ TE K + + + L + Sbjct: 433 DSFLAAASHELRTPLAAAKGHAHLALLKLGGETEAGPGKSLKIINRQIDRMAKLVEDLLD 492 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 L+ ++ L + +++ LS + + A +D+ Sbjct: 493 ISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVEASDQLEGTWDRGRLDQV 550 >gi|109898566|ref|YP_661821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] gi|109700847|gb|ABG40767.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c] Length = 1143 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 124/511 (24%), Positives = 205/511 (40%), Gaps = 21/511 (4%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLST 368 L+ E T++ + + AN +F L +S D I Sbjct: 296 ELTEKARINEARLRATINTSVDGVLGFDSNGIVDSANDAFCQLVGCRSDDIIGQ----DV 351 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + K + N + ++ D R I+ + + + + Sbjct: 352 RVLIRKENINEFNQYLIDRTQDNGHALGRGRDALIKHFDGS--LIPIRLAIGHVRLNKES 409 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLF 485 + +R + Q S++ GIA + ++ + AV + Sbjct: 410 HFVAFMSDLRYRIEMERALREREAQFRSLISNIP-GIAYRCKNMENWPMVFISDAVESIT 468 Query: 486 GYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GYP ED I P F E P + ++L Q LE + + + L Sbjct: 469 GYPAEDYISPDPKRHFYEHVHPDDIADITQKVLPHGEFQ-LEYRIYNAKGDIRWLLGYGT 527 Query: 545 IKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 S + DI+E K+ + L AK AE+ +S ++ FLA +SHEIRTP+ A Sbjct: 528 HVDDEESGQRWLDGFIMDITERKEMEQSLLLAKDKAEQAASARAAFLANMSHEIRTPMNA 587 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ + P ++ I++S +L ++ND+LD +K++ GK +L Sbjct: 588 IIGFSDILLDDAIEP----DQKKHLTTINKSAKSLLHLLNDILDSAKLDKGKFDLEMRDF 643 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 SL E V +S + L A+ K + + + + + ++Q+ NI+ NAI FT Sbjct: 644 SLIEEVDSVVSTLWLGASNKNLYLNVNIDPAVENQFHGAPDRIRQVLTNIVGNAIKFTLE 703 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG I I+ + + V DTG+GMT +L FGQ S R GTGLG ++ Sbjct: 704 GG-IDINIGVKPSGCIDFSVSDTGIGMTPEQLALVFDAFGQADASMSRRFGGTGLGTTIS 762 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 K +V+ GK S KG+ PL Sbjct: 763 KQLVELMGGKISATSEFGKGSCFSFSLPLAP 793 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 3/140 (2%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + K I +L + + + DG+ + GI+ S N A +L G +DI+ + V Sbjct: 295 KELTEKARINEARLRATINTSVDGVLGFDSNGIVDSANDAFCQLVGCRSDDIIGQDVRVL 354 Query: 501 LEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLT 557 + + + N YL + L + L+ +R+ I +L S + Sbjct: 355 IRKENINEFNQYLIDRTQDNGHALGRGRDALIKHFDGSLIPIRLAIGHVRLNKESHFVAF 414 Query: 558 MHDISEWKQEKNKLSHAKKI 577 M D+ + + L + Sbjct: 415 MSDLRYRIEMERALREREAQ 434 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 65/249 (26%), Gaps = 24/249 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D++G + ++ + +G + +IG + + +I+ L + G Sbjct: 323 DSNGIVDSANDAFCQLVGCRSDDIIGQDVRVLIRKENIN---EFNQYLIDRTQDNGHALG 379 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREF-----SGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + D + +PI S F F R + + + +F Sbjct: 380 RGRDALIKHF--DGSLIPIRLAIGHVRLNKESHFVAFMS--DLRYRIEMERALREREAQF 435 Query: 205 SHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTE----YYAHKDDVLK 255 L G + I ++ +S + + H DD+ Sbjct: 436 RSLISNIPGIAYRCKNMENWPMVFISDAVESITGYPAEDYISPDPKRHFYEHVHPDDIAD 495 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + L + + + Y + + + Sbjct: 496 ITQKVL---PHGEFQLEYRIYNAKGDIRWLLGYGTHVDDEESGQRWLDGFIMDITERKEM 552 Query: 316 DEGENLTPE 324 ++ L + Sbjct: 553 EQSLLLAKD 561 >gi|239906656|ref|YP_002953397.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796522|dbj|BAH75511.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 788 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 111/629 (17%), Positives = 210/629 (33%), Gaps = 64/629 (10%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++ + L A+ ++ E E F I + + TL Sbjct: 157 DEEADLEAMAAYAREIGADEAAFRAALAEVPRMPLARFEKICQALHHFANHLSTL--AVA 214 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKS 356 + A + E ++ P P F V G + + N + LT + Sbjct: 215 NFEQAWRIDELRQAQASIKARDRSFSEIIEFLPDPAFAVDRDGRVTFWNKALERLTGIAA 274 Query: 357 VDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 D + G + LL + P +D A + Sbjct: 275 ADMLGKGDFAYGAAFYGQPTPLLLDYARGAVSMPDP-RYQVADMAPGEIIAEVTLTAMPG 333 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + ++ + + D + + I+E +G+ + Sbjct: 334 GLRH-VWAKAVALYDESGQVNGAIEAIRDVTDRERREAALRQSEAMFRGIVETAHEGVWV 392 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + N+ ++ + GY ++L + T FL + + Sbjct: 393 YDVNYDTTFVNKRMADMLGYASHELLGRNLTEFLPPESQQRAARQQQRRRDG---FSDVF 449 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA--------- 574 ++ +L + I L D+S K + +L Sbjct: 450 EQCIERRDGTMLWVLISASPLQDEHGNFAGSLGMFSDLSAVKAVEAELRAHRQRLEEEVE 509 Query: 575 ----------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRF 615 + KS FL+ VSHE+RTPLT+I+GF+++I + F Sbjct: 510 ERTRELREQAMELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGREFGEHF 569 Query: 616 GPLGNP---------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 PL R + + ++ND+LD+++IESG M + + Sbjct: 570 SPLAGDNPALAARGKRIAHNLGVVYGEAERLTRLINDVLDLNRIESGNMQWRDQCIDPVA 629 Query: 667 AVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +A+ ++ L A I R + P +L D + Q+ N+L NA+ FT G ++ Sbjct: 630 VLHQAVQSIEGLLAQRPEIRFRFLAHTSAPPLLMDPDQLVQVIANLLQNAVKFTERG-EV 688 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI---PNSQQIRGEGTGLGLPLAK 782 ++ + V++ VRD GVG+ +LE F Q+ +GTGLGL + + Sbjct: 689 VLEVRAEAEA-VLMTVRDQGVGIPADQLESIFDRFHQVGRGDTIVSPTIKGTGLGLAICR 747 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +V G+ + S +G+ + P+ Sbjct: 748 QIVRHYGGRIWAESRLGEGSAFHVRLPMA 776 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 28/253 (11%), Positives = 62/253 (24%), Gaps = 22/253 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMR---------------LCDVSDILHIDPNN 131 + +D G + ++ L + G A M+G L D + P+ Sbjct: 251 FAVDRDGRVTFWNKALERLTGIAAADMLGKGDFAYGAAFYGQPTPLLLDYARGAVSMPDP 310 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + TL + G +V A+ +Y + + +G + Sbjct: 311 RYQVADMAPGEIIAEVTLTAMPGGLRHVW--AKAVALYDESGQVNGA--IEAIRDVTDRE 366 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYA 248 A ++ + F + E V YD + + Sbjct: 367 RREAALRQSEAMFRGIVETAHEGVWVYDVNYDTTFVNKRMADMLGYASHELLGRNLTEFL 426 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + + + S ++ + LQ+ L + Sbjct: 427 PPESQQRAARQQQRRRDGFSDVFEQCIERRDGTMLWVLISASPLQDEHGNFAGSLGMFSD 486 Query: 309 PSLSAYFDEGENL 321 S + Sbjct: 487 LSAVKAVEAELRA 499 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 36/374 (9%), Positives = 92/374 (24%), Gaps = 43/374 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D + +++ + +G + +++G L + + + Sbjct: 390 VWVYDVNYDTTFVNKRMADMLGYASHELLGRNLTEFLPPESQQRAARQQQRRRDGFSDVF 449 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +GT + + ++A P+ + F+G G+ A + Sbjct: 450 EQCIERRDGT--MLWVLISASPLQDEHGNFAG--SLGMFSDLSAVKAVEAELRA------ 499 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H +E+ + +++ + + L+E K L T + L T Sbjct: 500 --------HRQRLEEEVEERTRELREQAMELAEANIRLSELDRLKSAFLSTVSHELRTPL 551 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S L + ++ + + + + Sbjct: 552 TSILGFAKLIGREFGEHFSPLAGDNPALAARGKRIAHNLGVVYGEAERLTRLIND----- 606 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 V + N + + + LL + + Sbjct: 607 ---------VLDLNRIESGNMQWRDQCIDPVAVLHQAVQSIEGLLAQ---RPEIRFRFLA 654 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + + I +N++ T E + Sbjct: 655 HTSAPPLLMDPDQLVQVIANLLQNAVKFTERGEVVLEVRAEAEAVLMTVRDQGVGIPA-- 712 Query: 446 KMEIEVMQLCSILE 459 QL SI + Sbjct: 713 ------DQLESIFD 720 >gi|226227266|ref|YP_002761372.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] gi|226090457|dbj|BAH38902.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca T-27] Length = 745 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 11/377 (2%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+ E+ +L + L+ DGI + G I+ N A +LFG+ +I + + Sbjct: 13 RRAEMSESRLRATLDTAVDGIVTTDAIGTIVGFNPAAERLFGWDSAEITGRNIKEVMPSR 72 Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHD 560 + L ++ + LG ++ L+ LR+ + + L Y + D Sbjct: 73 DQIMQLREQQHGLIARAQEYVGSSSEILGRRRDGSLVPLRLALGRMQLHDEMLYVGFVSD 132 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE + ++ L A AE+ ++ KS FLA +SHEIRTP+ AIIGF+E++ Sbjct: 133 ISERRAMESSLREAAAQAERAAAAKSTFLANMSHEIRTPMNAIIGFTELLLQSDLTTT-- 190 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + + +S +L ++ND+LD +++E G M L SL + S ++L A Sbjct: 191 --QRNHLSTVRQSSRSLLGLINDILDTTRLEKGGMVLEMIDFSLKGISMQIESSLRLSAQ 248 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + TS+ N+P L D + Q+ N++ NAI FT GG + +S + +VI+ Sbjct: 249 ARGLSLTTSYPANLPEYFLGDPLRILQVLTNLVGNAIKFTERGG-VELSFSSEDE-QVII 306 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+GMT ++ PF Q S R GTGLG +++ +V+ G+ + S Sbjct: 307 MVRDTGIGMTQEQVASIFTPFTQADASISRRFGGTGLGTTISRQLVELMDGQIEVESALG 366 Query: 800 KGTLIEIIFPLYDTSHP 816 +G+ + PL P Sbjct: 367 QGSCFRVRLPLAPGKCP 383 Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 12/146 (8%), Positives = 37/146 (25%), Gaps = 13/146 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI------DPNNHIGDLLKRQNT 142 DA G + + + G + ++ G + +V + I + + Sbjct: 36 TDAIGTIVGFNPAAERLFGWDSAEITGRNIKEVMPSRDQIMQLREQQHGLIARAQEYVGS 95 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G+ + + + L + ++ G V + + Sbjct: 96 -SSEILGRRRDGSLVPLRLALGRMQLHDE------MLYVGFVSDISERRAMESSLREAAA 148 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 149 QAERAAAAKSTFLANMSHEIRTPMNA 174 >gi|170740074|ref|YP_001768729.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168194348|gb|ACA16295.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 927 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 110/754 (14%), Positives = 215/754 (28%), Gaps = 60/754 (7%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWPIEGT 155 ++ + +G+ +G R D+ + + I L + TW + G Sbjct: 67 LYNDAYAEILGDKHPAALGRRFRDIWTEIWAEIEPLIAAALAGEATWSENLPLVMNRRGH 126 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + + P+ G F + ++ + Sbjct: 127 DEQTWFTFSYSPLRDDEGAVVGM--FCACTETTGQVLAEERLRASEEFNRRILASSADCI 184 Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 V + + + + E+ F Sbjct: 185 KVLSLDGRLEFMSEGGMCAMAVEDFGLIRGAHWPDFWQGEGRDQARAAIREARRGGTGRF 244 Query: 276 HT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVD 327 ++ + L+ E E + D Sbjct: 245 QGLATTARGTPRWWDVIVTSIDGPDDRPEKLLAVSRDVTATREAEERVRESEARFRQMAD 304 Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P ++ G + N + T A + + + A Sbjct: 305 AVPQIVWITDAEGRTEFFNRQWTAYTGAPYAPTTAAAVAAAHVHPDDAQATMAAFGE--- 361 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ-FPENMPQNGIEPEDVDTRINKR 445 R H I+ + E + G + D ++ + Sbjct: 362 ARRSGGTFLVE---HRIRSAAGTYRWFLVRAEPSRDPVTGEVVRWFGASVDIHDRKLAEE 418 Query: 446 KMEIEVMQLCS-----------ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDIL 493 + L I + + D +++I+ + + N A + G+P +I Sbjct: 419 ALLALNADLEREVVARTRERGLIWQLSLDLLSVIDIDTAAFAAANPAWTAALGWPTSEIE 478 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 +P+ + + I L T++ L + Sbjct: 479 GRPYAELVHPDDVGASLAAFDAIRQG--SPVLHFENRYRTRDGGWRWLSWVAVP--EGGK 534 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 D++E K+ + +L A++ + V+H+ LT I+G ++++ Sbjct: 535 LYSVTRDVTEEKERRAELEAAQEALRQSQKMEAMGQLTGGVAHDFNNLLTPIVGSLDMLQ 594 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + G R +S +V LL ++ + L PV + + V+ Sbjct: 595 RRGLGG---EREQRLIAGAMQSAERAKTLVQRLLAFAR----RQPLQPIPVDVAKLVTGM 647 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--- 728 LV +I + + +P AD ++ LN+ NA P GG + IS Sbjct: 648 GDLVASTM-GPQIRVAVDAPDALPPAKADPNQIEMALLNLCVNARDAMPEGGTLRISARA 706 Query: 729 --------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 TT + L V D+G GM L +A++PF S + G+GTGLGL + Sbjct: 707 ETVGPGHRTTLRPGPYIRLSVADSGTGMDEATLARAVEPFF----STKGVGKGTGLGLSM 762 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + G I S P GT +E+ P D + Sbjct: 763 VHGLASQLSGALTIQSRPGLGTNVELWLPRSDAA 796 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 42/441 (9%), Positives = 95/441 (21%), Gaps = 36/441 (8%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKT 105 D E+ ++ + E+ F + V W DA G + + + Sbjct: 270 DRPEKLLAVSRDVTATREAEERVRESEARFRQMADAVPQIVWITDAEGRTEFFNRQWTAY 329 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 G + G+ + T+ + + GT Y + Sbjct: 330 TGAPYAPTTAAAVAAAHVHPDDAQATMAAFGEARRSGGTFLVEHRIRSAAGT--YRWFLV 387 Query: 164 AALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS------- 215 A P E R FG L+ + Sbjct: 388 RAEPSRDPVTGEVV--RWFGASVDIHDRKLAEEALLALNADLEREVVARTRERGLIWQLS 445 Query: 216 ---------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + E D + + Sbjct: 446 LDLLSVIDIDTAAFAAANPAWTAALGWPTSEIEGRPYAELVHPDDVGASLAAFDAIRQGS 505 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L + + T + ++ + + + Sbjct: 506 PVLHFENRYRTRDGGWRWLSWVAVPEGGKLYSVTRDVTEEKERRAELEAAQEALRQSQKM 565 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + + G N + S+D ++ G + + Sbjct: 566 EAMGQ----LTGGVAHDFNNLLTPIVG--SLDMLQRRGLGGEREQRLIAGAMQSAERAKT 619 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 A L I + + +T + A+ + P+ + Sbjct: 620 LVQRLLAFARRQPLQPIPVD--VAKLVTGMGDLVASTMGPQIRVAVDAPDALPPAKADPN 677 Query: 447 MEIEVMQLCSIL---EATSDG 464 +IE+ L + +A +G Sbjct: 678 -QIEMALLNLCVNARDAMPEG 697 >gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 775 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 134/637 (21%), Positives = 249/637 (39%), Gaps = 65/637 (10%) Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 + I S L S +T+ + + SLP Q Sbjct: 144 GDATRILEVLSATQPLTASAPQSGITDIALPDGRTAIATQRVI-----RSLPGQVVIIQE 198 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYL--------SHRNHPSLSAYFDEGENLTPETVDKCP 330 N+ + ++ ++ F L D +++ Sbjct: 199 NVEPIWRSDTALSITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGR 258 Query: 331 IPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + + G + + + S + +S D+ G ++ L+ + + ++ Sbjct: 259 CGLWDWDLSRGRI-FWSQSMFTMLGLESRSDLLTFGEVNALVKSDDIDLFAIANQLIT-- 315 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 I+ +Q + + + GI + + + + Sbjct: 316 ---GTISQIDHTFRMQHANGHWIWLRVRCELSQGAGDAGTHLIGIAVDITEHKSLAERTV 372 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPS 507 ++L +E + + + E ++ N +L P + + +E T Sbjct: 373 EADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETVVEVGTMP 432 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 T + + K L + ++ Y DI+ K+ Sbjct: 433 ---EARTRLPEAGHHPPGARTFEAQLDNGKWLHIS---ERRTKDGGYVAVGTDITRIKEH 486 Query: 568 KNKLSHA-----------------------------------KKIAEKESSHKSDFLARV 592 + KL K AE + KS FLA + Sbjct: 487 EQKLVENDLRLRATVVDLKRSQATLERQAVELVDLAQKYSEEKNRAEDANQTKSKFLANM 546 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL AIIGFSE++ + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+ Sbjct: 547 SHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEA 606 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G+M L EP L +SE++ +V A+ K++++R N+IP +LAD R++KQI +N+L Sbjct: 607 GRMKLDLEPFDLATTLSESLRVVSGRADNKQLMLRADIDNDIP-VLADRRAIKQILVNLL 665 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNA+ FTP GG++ + +++L + DTG+G+ L + +PF Q+ + Sbjct: 666 SNAVKFTPDGGRVTVRGRVFEE-QIVLLIADTGIGIAKQSLRRLGQPFEQVESQLTKTYH 724 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GLGL +AK++ + + G + S GT++ + P Sbjct: 725 GSGLGLAIAKSLTNLHGGSMRLRSQLGVGTVVRVALP 761 >gi|237801381|ref|ZP_04589842.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806664|ref|ZP_04593368.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024240|gb|EGI04297.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027778|gb|EGI07833.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1117 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 114/604 (18%), Positives = 212/604 (35%), Gaps = 42/604 (6%) Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 T + ++L+T + E + + + Sbjct: 264 TPENGPEPEILQTYAFEREIYGRVWRMEVGAHPQFVVALDPVPAGRVFIIGVLVSLMLTV 323 Query: 304 SHRNHPSLSAYFDE---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359 + G+ V+ G + N + + Y + Sbjct: 324 LVGTLLVSRQRKQQFIAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEGEV 383 Query: 360 IEIAGGL-----------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + LL + + I + I+ Sbjct: 384 LGSPLAPLLVPPPLVHEDEQLLKRVARGELGSTLETQRLHKSGQLIDVTITCSFIREADG 443 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSD-GIA 466 L + + ++ + + ++ L ++L+A+S+ I Sbjct: 444 TILGAAKMMHDITDRKRVERYLIEFNAQLEQQVSERTAELSRVAGLLQAVLDASSEVSII 503 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSL------ 519 +I+ +G I+ NR L GY +++R+ + + L+ Sbjct: 504 VIDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSVFHLPEEVAARSAELSREYGTSIVGID 563 Query: 520 ------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 D + + ++ + + +I+ + + + DI+E Sbjct: 564 VFFYKADREGSETRQWTYVRRDGTTVPVSMIVTPIRTADGEVIGHLGIAQDITERLHRNA 623 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AK AE ++ KS FLA +SHEIRTP+ A+IG S ++ N N + + Sbjct: 624 ELHAAKASAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLTK 679 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +G +L I+ND+LDI+KIE+G+M L P S E L A EK + S Sbjct: 680 LQIAGRSLLGIINDILDIAKIEAGEMRLENNPFSPRLLFDELSELFSPQAQEKGLRFSVS 739 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTG 745 +P ++ D V QI +N++ NA+ FT GG + +S + + + L V+DTG Sbjct: 740 VVTPLPGLLIGDALRVNQILMNLVGNALKFTTVGGVDVTVSCESDTADTCWLRLSVQDTG 799 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ L + PF Q S R GTGLGL + + + + G+ + S G+ Sbjct: 800 CGIPADVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLSEQMGGRVGVESELGAGSEFW 859 Query: 806 IIFP 809 + P Sbjct: 860 VSLP 863 Score = 43.1 bits (100), Expect = 0.19, Method: Composition-based stats. Identities = 16/262 (6%), Positives = 58/262 (22%), Gaps = 28/262 (10%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149 G + + + G +++G L + + + + + + + +T Sbjct: 362 DGRIITWNRAAEQMFGYDEGEVLGSPLAPLLVPPPLVHEDEQLLKRVARGELGSTLETQR 421 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------- 199 G + + + I + G ++H Sbjct: 422 LHKSG--QLIDVTITCSFIREADGTILGAAK--MMHDITDRKRVERYLIEFNAQLEQQVS 477 Query: 200 ------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 L E+ + + V Sbjct: 478 ERTAELSRVAGLLQAVLDASSEVSIIVIDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSV 537 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 H + + L +S+ + F + ++ + + ++ + + Sbjct: 538 FHLPEEVAARSAELSREYGTSIVGIDVFFYKADREGSETRQWTYVRRDGTTVPVSMIVTP 597 Query: 308 HPSLSAYFDEGENLTPETVDKC 329 + + + ++ Sbjct: 598 IRTADGEVIGHLGIAQDITERL 619 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 20/156 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNH 132 ID G + + +G +M+ + V + I + Sbjct: 505 IDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSVFHLPEEVAARSAELSREYGTSIVGIDV 564 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 R+ + + T +GT VP+ + PI + + E G G I Sbjct: 565 FFYKADREGSETRQWTYVRRDGTT--VPVSMIVTPIRTADGEVIGHLG--IAQDITERLH 620 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 A + K + + Sbjct: 621 RNAELHAAKASAEAANAAKSLFLANMSHEIRTPMNA 656 >gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 726 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 181/378 (47%), Gaps = 13/378 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS---KLFGYPVEDILRKPF 497 R+ +++++ + IL++ + + + + I NRA L + Sbjct: 359 RLAEQELKAREYEKKFILDSLEEMVVLRDPNFNIRWANRAALNNKDLLKAEDKAPEADSP 418 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 N P + + + +L + K L +K + K+ + T Sbjct: 419 EAQDRYNIPKPLYPLAPDYAAHELTSSEGKTWLLRSK-----PV---CDKIGNTIAVLET 470 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +I+E K + +L AK+ AE + KS FLA +SHE+RTPL +IIGFS+++ + +G Sbjct: 471 GVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYGE 530 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L N + + I SG +L+++N++LD+SK+E+G LH+ L E +E ++ Sbjct: 531 L-NLKQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFP 589 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 +A K + I +N+ R+ AD + Q+ N+++NA+ F+ G + + + + Sbjct: 590 FATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVK-AVQMDGFL 648 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D G+G+ + EK KPF QI +S R +GTGLGL L K +V + G + S Sbjct: 649 KITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESE 708 Query: 798 PAKGTLIEIIFPLYDTSH 815 KG++ PL S Sbjct: 709 VGKGSVFGFSIPLPGRSE 726 >gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris HaA2] Length = 627 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 131/603 (21%), Positives = 222/603 (36%), Gaps = 31/603 (5%) Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINL-NQYTKK 286 P + V+ D +L L ++ + F ++ + Sbjct: 12 PSRATASADSVALSRIIGERLDALLHPSARYDALASARHRAFIAPRLFGSLAAFAAFPIY 71 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346 + G + + + + L Sbjct: 72 LAMRGAPTALEALAFAWLIAPILLSWFLSRTGRYESAHVLSSLSLTGLILVIATLTGGIT 131 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 SF + + +E A S + A V++ A + Sbjct: 132 SFAAIWLI--LVPLEAALSASRRVVAFAAMLALGAAAVLIAI--GQLGWLPAAPAGDVSH 187 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 A + + + +E + + SD I+ Sbjct: 188 GALMAVSVASATLYAAGLAFGSESLTRTSDTL--------LSVEEERYRLLARHMSDVIS 239 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 R G + + AV L G P + + L++ +++E Sbjct: 240 RHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHVADRPAYLKALSDAGRGGEARSVE 299 Query: 527 KITLG---STKEEK-----LLSLRIIIKKLP-------FSSCYSLTMHDISEWKQEKNKL 571 + + L + + + M D+++ KQ++ L Sbjct: 300 FRVRREVARDDRGRPSAAEFIWLEMRCRPFETGVVSAAGEADVVAVMRDVTDRKQQEQAL 359 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ A + + KS FLA +SHE+RTPL A+IGFS++I ++ L R EYA I+ Sbjct: 360 EEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPERRKEYAQLIN 419 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L +VN +LD+SKIESG + EP + A+ +L+ L A E I + T Sbjct: 420 DSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARENGIDLVTRAP 479 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 N+P I+ D R+ KQI LN++SNAI FT GG + + ++LRV DTGVG+ Sbjct: 480 ENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVD-AMVEGARLVLRVSDTGVGIAAE 538 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +L++ PF Q + Q R EGTGLGL + K++V + G + S +GT + + PL Sbjct: 539 DLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGDIEVKSEVDRGTTVTVSLPLA 598 Query: 812 DTS 814 + Sbjct: 599 QPA 601 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 69/257 (26%), Gaps = 21/257 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146 +G ++ IS + IG A + G L D + + D + + Sbjct: 240 RHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHVADRPAYLKALSDAGRGGEARSVE 299 Query: 147 TTLWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + + +++ P S +V V R D + + Sbjct: 300 FRVRREVARDDRGRPSAAEFIWLEMRCRPF--ETGVVSAAGEADVVAVMRDVTDRKQQEQ 357 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 L++ + + F N V ++ H+D+++ + Sbjct: 358 ALEE--------ARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPE 409 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFD 316 ++ + Q +N K G + L + + + Sbjct: 410 RRKEYAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARE 469 Query: 317 EGENLTPETVDKCPIPF 333 G +L + P Sbjct: 470 NGIDLVTRAPENLPEIV 486 >gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009] gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas palustris CGA009] Length = 610 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 182/386 (47%), Gaps = 20/386 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + +E + + SD I+ NR G + + A L G PV + + Sbjct: 197 ALLNVEEERYRLLARNMSDVISRHNRNGAVRFISPAAENLLGTPVARLAEHGLFDRVHVA 256 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLG---STKEEK-----LLSLRIIIKKLP------- 549 +++ ++E + + + + + + L Sbjct: 257 DRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTA 316 Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + M DI+E K + L A+ A++ + KS FLA +SHE+RTPL AIIG Sbjct: 317 ASNAGETEVVAVMRDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIG 376 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS++I LG R EYA I+ SG +L +VN +LD+SK+ESG + EP + Sbjct: 377 FSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPR 436 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 A+ +L+ L A + I + T N+P ++ D R+ KQI LN++SNAI FT GG + Sbjct: 437 PALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTV 496 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S ++LRV DTGVG+ +L++ PF Q + Q R EGTGLGL + K++V Sbjct: 497 TVSAAVE-GTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLV 555 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811 + G+ + S GT + + PL Sbjct: 556 RMHGGEIEVQSQIDCGTTVTVSLPLA 581 >gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 576 Score = 346 bits (887), Expect = 1e-92, Method: Composition-based stats. Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +++ Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A + I ++ + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 ASQAGLIDGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + K + + + G + S G + P+ Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +++ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + T + L S + + E E E Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427 Score = 44.6 bits (104), Expect = 0.063, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312 >gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2] gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2] Length = 609 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 162/374 (43%), Gaps = 25/374 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L SIL SDG+ + G ++ NR S + G ++ + V Sbjct: 251 REALSQNEEEKEKLSSILTNMSDGVVATDDHGRVILVNRRASAMLGVNENEMTGRHIAVL 310 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558 L + + S TL ++ E ++ + + Sbjct: 311 LGIDPEET-----EALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTIAVL 365 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ + + +F+A VSHE+RTPLT I ++E + G + Sbjct: 366 QDVTEQEEMETT--------------RREFVANVSHELRTPLTTIRSYAEAL---DDGAM 408 Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P+ E + I ++ +V DLL +S+++S + L +P + E + E Sbjct: 409 AEPQLAERFVGVIRNETERMIRLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSF 468 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 E I I +++ D + Q+ N++SNA+ +TP GG I I + + Sbjct: 469 QMKENHIRSGMFVEQGIGKVVIDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGML 528 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V+DTG+G+ +L++ + F ++ ++ GTGLGL +A+ +V A+ G+ ++ S Sbjct: 529 AISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESE 588 Query: 798 PAKGTLIEIIFPLY 811 +GT P+ Sbjct: 589 YGQGTCTTFTLPMS 602 Score = 57.7 bits (138), Expect = 9e-06, Method: Composition-based stats. Identities = 29/248 (11%), Positives = 67/248 (27%), Gaps = 30/248 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D HG + ++ +G +M G ++ +L IDP + L ++ Sbjct: 278 TDDHGRVILVNRRASAMLGVNENEMTGRH---IAVLLGIDPEE--TEALYSGSSASTL-L 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + + I + PI+ R +G ++ + + SH Sbjct: 332 QLEPAGQDEPIVIRVTFTPIHRREFGITGT--IAVLQDVTEQEEMETTRREFVANVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E D + P A + + + + + Sbjct: 390 RTPLTTIRSYAEALDDGAMAEP---------------QLAERFVGVIRNETERMIRLVTD 434 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-------ENL 321 L + + + + + F + NH + ++G + Sbjct: 435 LLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVVIDRDQ 494 Query: 322 TPETVDKC 329 + +D Sbjct: 495 IDQVLDNL 502 >gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B] Length = 756 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 183/393 (46%), Gaps = 24/393 (6%) Query: 434 EPEDVDTRINKRKME----------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + ++ +E E +L I E +DG+ +I R+GI+ N S+ Sbjct: 215 RRNLRSQALQRQALEDAYMRLFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWVNDGFSR 274 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542 L GY ++++ + L + L I ++ + + K+ + + + Sbjct: 275 LTGYSFDELVGRNPGDILNSDNTDP--DTLRTIEEGRIKGKPFRAELINRRKDGEDIWIE 332 Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + Y D++ K+ + +L A+ AE+ + K +FLA +SHE RT Sbjct: 333 TNQVPVFDDTGRIETYIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRT 392 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ +IG +++++ + YA+ I S +L ++ND+LD+S++ + ++L Sbjct: 393 PMNGVIGMTQMLQATDL----SEDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLF 448 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 L V + L+ A EK++ + ++P + D R ++QI +N++ NA+ Sbjct: 449 NVDFDLHACVRDTARLLSSQAEEKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVK 508 Query: 718 FTPSGG-QIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 FT SG I +S + +E + + V DTG+G+ +L+ + F Q N+ + G+G Sbjct: 509 FTTSGSVTIRLSAALSGDEIALSIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSG 568 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LGL +++ + A G ++ STP +G+ + Sbjct: 569 LGLSISRGLAQAMGGDIHVTSTPGEGSCFTLTL 601 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 28/255 (10%), Positives = 73/255 (28%), Gaps = 23/255 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 I G ++ +++ + G +++G D+ + + DP+ I + + + + Sbjct: 259 IGRDGIVRWVNDGFSRLTGYSFDELVGRNPGDILNSDNTDPDTLRTIEEGRIKGKPFRAE 318 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + + I+ +P++ + + + K Sbjct: 319 LINRRKDGED--IWIETNQVPVFDDTGRIETY--IAVERDVTATKEYERQLKEARLAAEE 374 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 IK+ + ++ N V +T+ D +E L Sbjct: 375 GARIKEEFLATMSHEFRTPM-----------NGVIGMTQMLQATD---LSEDQRLYADTI 420 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 S ++ ++ G + F+ + + E V Sbjct: 421 LSSSRALLSLINDVLDLSRMNAAGV--SLFNVDFDLHACVRDTARLLSSQAEEKQLALGV 478 Query: 327 DKCP-IPFFVYSHGN 340 + P +P +V Sbjct: 479 EIDPDVPVWVTGDDR 493 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 43/402 (10%), Positives = 116/402 (28%), Gaps = 35/402 (8%) Query: 59 QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA--FKMIGM 116 +++ +T+ S++ F P R+ A + + G + G Sbjct: 2 EQTQPDTDGPLSQHNLRFSPRGLMTRY-----AAIRTRLFYARMAAAAGLTLVLSLIFGP 56 Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV-PIDLAALPIYSRNREF 175 V + ++ + L+R G+ + L +Y+ + Sbjct: 57 LWPMVFFVFYLVADKAETSYLRR------LPERLDKGGSLRQAQRVILLFSLLYAIS--- 107 Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 GF ++ ++ + F+ + S+ Y + + Sbjct: 108 --VCGFAVIPYVQMHIQGGEHEVLAEPFFALCVVLGPALSAALD--YRYTPLPAAVRLIM 163 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + +LT + + + + ++ + Q F + ++ + Q Sbjct: 164 LSLLPLALTSHTLWQHETHGADLQLMVAGLLAFFFAQIWFLVLVQKRHRNSRRNLRSQAL 223 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354 +++ E R + + + G + + N F LT Y Sbjct: 224 QRQALEDAYMR-----LFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWVNDGFSRLTGY 278 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + + G + +D + ++ + R A L + + E+ T Sbjct: 279 SFDELVGRNPGD---ILNSDNTDPDTLRTIEEGRIKGK--PFRAELINRRKDGEDIWIET 333 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + +E + T+ +R+++ +L + Sbjct: 334 NQ-VPVFDDTGRIETYIAVERDVTATKEYERQLK--EARLAA 372 >gi|220910721|ref|YP_002486031.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219867493|gb|ACL47830.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 766 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 111/560 (19%), Positives = 222/560 (39%), Gaps = 31/560 (5%) Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 LP + + Q LQ + E ++R + T+ Sbjct: 55 PLPTDSSIAEVQGLTESFNQMAEQLQQFFQTKVEAEANRQSEARFQQLAAAVPGMIYTLT 114 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + P Y + + + + +S +E + + S + + + Sbjct: 115 QSPDG-----SQKFEYVSSASRTILELESEQALEDINSVIEQIHPDDRSTYDEVSAQSVS 169 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + S TI + + ++ GI + D + + + Sbjct: 170 LME----PFSLSFRTITPSGQLKWVEASS--RPLLNTNGSITWYGILLDVSDRKRAEIAL 223 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 Q I+ T+DGI +I+ + N+ + + +I+ P + + Q+ Sbjct: 224 R----QYERIVANTTDGIILIDTQFRYQIANQTYLLWYNKSIFEIIGFPVSKIIGQDVFE 279 Query: 508 V-MNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 YL L+ + ++ E ++ ++ + + + ++ +I+ K Sbjct: 280 TNFRPYLVRCLAGETIESREWFEIPTLGRQFFSVTYSPYLDENLAIAGIVASLRNITSLK 339 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L AK+ AEK S KS FLA +SHE+RTPL I+ ++++ P Y E Sbjct: 340 LAEQELEKAKEEAEKASQAKSLFLANMSHELRTPLNVILIMTQMMNRT---ANKIPEYQE 396 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I R+ + +L ++ND+LD+ K+E+ K +L +L E + + +K I Sbjct: 397 YIDLISRNSDHLLKMINDVLDLFKVEAEKASLENSETNLFELLQSIYVTFKQQCTDKHIQ 456 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE------- 736 I +PR IL D++ ++Q+ +N++ NA+ FT G + ++ T ++ Sbjct: 457 INLEIDEKVPRLILVDVQKLQQVLINLIGNAVKFTEHGEITVRVTVELTQDKTKWQDASI 516 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V DTGVG+ E+ + F Q +Q GTGLGL +++ +V G+ + Sbjct: 517 PLAFTVEDTGVGIAPEEMNQIFDAFAQAAAGRQ-MTGGTGLGLSISQGLVQLMGGEITVK 575 Query: 796 STPAKGTLIEIIFPLYDTSH 815 ST G+ + P+ + Sbjct: 576 STLGVGSTFHFVLPVQPVAE 595 >gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134] gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134] Length = 1386 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 116/742 (15%), Positives = 256/742 (34%), Gaps = 48/742 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ++ G +++ K +G +++ + + D++ + I Q G+ Sbjct: 388 VNDEGRYVDVNPAACKLLGYSKAELLNLSVWDITPGTNQTEGKKIWQTFINQAYLTGEYE 447 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A+P + + Sbjct: 448 VICKDGT--RRITEFHAVP------NIQAGLHLSNLQDITGRKAMEKALADTTRDLKEAV 499 Query: 209 EIKKGHSSVEKE---KYDIFSQQSPPPHLRMKNKVSSLTE--YYAHKDDV--LKTEKYPL 261 + + + ++ ++ + H DD L + + Sbjct: 500 QAGNVGLWYWDLHTNTVEYSPEWKKQLGYAEEDVFNTFEDFTSRVHPDDQPLLNAKIAEV 559 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----FDE 317 + E + + N + + + S E Sbjct: 560 MAGEVQKIEWSFRLRRKDDFYCWVSLQGAAFTNAAGNLVRIKGTQLDITESKQMLQDLKE 619 Query: 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 EN + + + ++ G + + N + + Y + + P+ Sbjct: 620 SENRLELALSSAGLGTWDWNLQTGEIIF-NERWAKILGYTPEEIAPNISTWEKIRVHPED 678 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + + + + + + + + G Sbjct: 679 MP--RVEQALSDHLEGKTTIYREEQRLMTKSGK--WVLDTGKVFVRAKHGAPLRAVGTCL 734 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-- 493 + + + N+ +++ + EA S G+ N + + + ++FG + Sbjct: 735 DIDERKRNEEELKSLNHKFQLAYEAASIGVWEHNYKTEQSIWDDKMYEIFGVSRQTFKTE 794 Query: 494 -RKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + + + + + L + Q E + + K L I+ Sbjct: 795 KQSWIEQLVHPDDRNRLKEEIATFFHLGITIQENEFRVITPGGKTKYLKSSAYIEYDNSG 854 Query: 552 SCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + T D++ K+ + K A K +FLA +SHEIRTPL +IGF ++ Sbjct: 855 NPLFGTGLSIDLTYIKEAEAKAKQASKAKS-------EFLANMSHEIRTPLNGVIGFVDL 907 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + N EY + +S + +LDI+ D+LD SKIE+GKM + L ++ Sbjct: 908 LLETSL----NESQKEYLKTVHQSAHTLLDIITDILDFSKIEAGKMEISITQTDLMHLIN 963 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QI 725 + +S+V+ +K++ + ++++P+ I AD KQI N++SNA+ FT +G ++ Sbjct: 964 QVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFKQILTNLMSNAVKFTEAGEVVLKV 1023 Query: 726 IISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + NE + V+DTGVG+ + K ++ F Q S + GTGLGL + + Sbjct: 1024 ELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAFSQEDASTTRKFGGTGLGLTITNKL 1083 Query: 785 VDANMGKFYIFSTPAKGTLIEI 806 + + + S P +G++ Sbjct: 1084 LKLMESRLKLKSVPGEGSIFYF 1105 Score = 98.2 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 33/274 (12%), Positives = 79/274 (28%), Gaps = 14/274 (5%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E + + + + + AN + + L + + L Sbjct: 240 QQVTEHQGKYQALFELASDAIMLINPVSREIIDANQATVQLLGHSKKEL--------QKL 291 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + + + ARL T+ W + + K P Sbjct: 292 NRNDIIAAEVRDETLQNWTKQLAEKEEARLDTV-WVNKEGKTILVEVLGKIIHLPGEEVL 350 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 I + + +++++ + S+ E D I ++N EG + N A KL GY Sbjct: 351 MLIGRDRTEYIKIQQELQQSHLIYQSLFENALDAILLVNDEGRYVDVNPAACKLLGYSKA 410 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++L + ++ T E + ++ Sbjct: 411 ELLNLSVWDITPGTNQTEGKKIWQTFINQAYL-TGEYEVICKDGTRRIT--EFHAVPNIQ 467 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + DI+ K + L+ + ++ Sbjct: 468 AGLHLSNLQDITGRKAMEKALADTTRDLKEAVQA 501 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 50/481 (10%), Positives = 122/481 (25%), Gaps = 36/481 (7%) Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 G L D + + LL+ + ++ K P++ N + Sbjct: 169 GKHLKDFAPEMVYQALLDKMHLLESKQSFSHKVK-------IKGFTFTNVYQPVFDENGQ 221 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH-SSVEKEKYDIFSQQSPPPH 233 I + + + K+ L E+ + +I Sbjct: 222 LDSI--IIITNNVTRLHHYQQQVTEHQGKYQALFELASDAIMLINPVSREIIDANQATVQ 279 Query: 234 L--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 L K ++ L +V + D +N T Sbjct: 280 LLGHSKKELQKLNRNDIIAAEVRDETLQNWTKQLAEKEEARLDTVWVNKEGKTILVEVLG 339 Query: 292 ----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346 L + + + + + V G NP Sbjct: 340 KIIHLPGEEVLMLIGRDRTEYIKIQQELQQSHLIYQSLFENALDAILLVNDEGRYVDVNP 399 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + L Y + + ++ T + + + Sbjct: 400 AACKLLGYSKAELLNLSVWDITPGTNQTEGKKIWQTFINQAYLTGE--------YEVICK 451 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 F + + ++ + L ++A + G+ Sbjct: 452 DGTRRITEFHAVPNIQAGLHLSN----LQDITGRKAMEKALADTTRDLKEAVQAGNVGLW 507 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + + + K GY ED+ + FT + + ++N + E+++ ++++ Sbjct: 508 YWDLHTNTVEYSPEWKKQLGYAEEDVFNTFEDFTSRVHPDDQPLLNAKIAEVMAGEVQK- 566 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEK 580 +E K++ + + ++ + + DI+E KQ L ++ E Sbjct: 567 IEWSFRLRRKDDFYCWVSLQGAAFTNAAGNLVRIKGTQLDITESKQMLQDLKESENRLEL 626 Query: 581 E 581 Sbjct: 627 A 627 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 29/374 (7%), Positives = 74/374 (19%), Gaps = 21/374 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D H E S E K +G + D + +H D + + Sbjct: 506 LWYWDLHTNTVEYSPEWKKQLGYAEEDVF-NTFEDFTSRVHPDDQPLLNAKIAEVMAGEV 564 Query: 146 KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD- 201 + W + Y + L + R G K + Sbjct: 565 QKIEWSFRLRRKDDFYCWVSLQGAAFTNAAGNLV--RIKGTQLDITESKQMLQDLKESEN 622 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------SSLTEYYAHKD 251 + L G + +I + L + + + Sbjct: 623 RLELALSSAGLGTWDWNLQTGEIIFNERWAKILGYTPEEIAPNISTWEKIRVHPEDMPRV 682 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + ++ T+ + K + L Sbjct: 683 EQALSDHLEGKTTIYREEQRLMTKSGKWVLDTGKVFVRAKHGAPLRAVGTCLDIDERKRN 742 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + + I + ++ + + L Sbjct: 743 EEELKSLNHKFQLAYEAASIGVWEHNYKTEQSIWDDKMYEIFGVSRQTFKTEKQSWIEQL 802 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P + + + I + + + + + + + Sbjct: 803 VHPDDRNRLKEEIATFFHL---GITIQENEFRVITPGGKTKYLKSSAYIEYDNSGNPLFG 859 Query: 431 NGIEPEDVDTRINK 444 G+ + + + Sbjct: 860 TGLSIDLTYIKEAE 873 >gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 678 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 98/537 (18%), Positives = 195/537 (36%), Gaps = 41/537 (7%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYA 344 + S S P+ A + E F V G + Sbjct: 4 DLSTPSSSPTLAAALPAAIAEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYVIRTT 63 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N +F T + LL + I + ++ Sbjct: 64 NGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQAKALK 117 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + PE + + + + +R++ + ++ + Sbjct: 118 R--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMP 169 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + +++ +G++ N A + FG + ++ L + SL ++ Sbjct: 170 VWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQEQRG 227 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSH 573 L + + + + + + + + D++E ++ + Sbjct: 228 LRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERS 287 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + Y + + I S Sbjct: 288 ARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSVIASS 344 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +++D+LD+S + GK+ L E + L E V EA++ +L A K ++ Sbjct: 345 ARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHVPPT 404 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +L D ++Q+ N+LSNAI FTP+ G+I + + +++ V D+G G+ L Sbjct: 405 PCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIAAEFL 463 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 F Q + + G GLGL + + +V+ + G+ S KG + P Sbjct: 464 PHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 139 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 197 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 198 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 255 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 256 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 314 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + +++ + + D ++ L + + Sbjct: 315 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 374 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + L + + + + P+ Sbjct: 375 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 433 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 434 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 493 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 494 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 553 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 554 LLAVEDQPDMLDYLRRLLEEQGAEVVVAGSATDALALIDHRGH 596 >gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM 3645] Length = 1138 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 131/654 (20%), Positives = 242/654 (37%), Gaps = 34/654 (5%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 EF G GFG++ RV+ D ++ + + + + Y I + Sbjct: 329 EFPGAIGFGMIQ--RVERDDIDSFVATERSDNAPEFMVRSLGA-ASVAYIIQHIYPLEDN 385 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + + P +T + K Sbjct: 386 RAAWGYDIGSESVRRNAIEKAIRSGDPTITGMIHLRQDDVMRAGFLYFVPIYKNGTNPQT 445 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 +E+ L D +L + +D F ++ P + Sbjct: 446 PAERETNLAGVLYAPIILERSLDYMGDLLDDGLD-----FEIFDGDKATQRTPLYDHDRH 500 Query: 354 YKSVDDIEIAGGL-STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSL 411 DIE A + + + + S A R+ + Sbjct: 501 LDQFVDIESAKAAYARRMFFHSSPIMVGGRTWTIVTSTTAPFHAQVDRVTPAALGLGGAT 560 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME----IEVMQLCSILEATSDGIAI 467 + + + + K+ E +L I+ TS+G+ I Sbjct: 561 LSLLLAGIIWSMGLSQTRAMALAEDMTQELRASEKIATQSAEEAERLAKIIRRTSNGVII 620 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLE 526 + +G I N +++ GY +E+ L K L + + L+ Sbjct: 621 TDIDGKIEWINDGFTRISGYQLEEALGKSPRDLLYGPN--SNLDAIARLEDAFRLQAPTN 678 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE-------WKQEKNKLSHAK 575 + K+ + + I L +S + + +DI+E K +L A Sbjct: 679 SEIVNYAKDGREYVVATEIAPLLDTSGTLTGFMMIENDITEKCAAEARLKAVNAELMLAH 738 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + AE+ S KS+FLA +SHEIRTP+TAI+GFS+++ Q + + I R+GN Sbjct: 739 QDAERASKIKSEFLANMSHEIRTPMTAIVGFSDLLLEQ---GMSEEEKRKSVGTIQRNGN 795 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L+++ND+LD+SK+ESGK ++ + E + + L+ A + ++ +P Sbjct: 796 HLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHELLNERAITQENRLQIELKGALP 855 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYEL 753 + I +D +KQ N++ NAI FT G + + ++E++I +V D+G+GM+ +L Sbjct: 856 QTIHSDSTRLKQALFNLVGNAIKFT-QNGVVKVIAECDFAHEQMIFQVIDSGIGMSPEQL 914 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 E+ +PF Q S + GTGLGL + K + + G + S G+ + Sbjct: 915 EQIFQPFRQADASTTRKFGGTGLGLTITKQIAELLGGDVRVESQSGVGSSFTLR 968 Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 73/254 (28%), Gaps = 15/254 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146 D G ++ I++ + G + +G D+ ++D + D + Q + Sbjct: 621 TDIDGKIEWINDGFTRISGYQLEEALGKSPRDLLYGPNSNLDAIARLEDAFRLQAPTNSE 680 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +G V ++A P+ + +GF I + A K ++ + Sbjct: 681 IVNYAKDGREYVVATEIA--PLLDTSGTLTGFM--MIENDITEKCAAEARLKAVNAELML 736 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 H+ + S ++ E S + P + + + +E+ + Sbjct: 737 AHQDAERASKIKSEFLANMSHEIRTPMTAIVG-------FSDLLLEQGMSEEEKRKSVGT 789 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSAYFDEGENLTPE 324 IN K G + + E + + + L E Sbjct: 790 IQRNGNHLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHELLNERAITQENRLQIE 849 Query: 325 TVDKCPIPFFVYSH 338 P S Sbjct: 850 LKGALPQTIHSDST 863 >gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 865 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 106/521 (20%), Positives = 190/521 (36%), Gaps = 42/521 (8%) Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 ++ ++ P ++ S G N F + + L Sbjct: 203 RERSMLRTLINTLPDLIWLKDSKGVYLACNHRFEQFFGASEPEIVGK---TDYDFVDKAL 259 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 +D + + + + + ++ + + GI Sbjct: 260 ADFFRAHDLAAMEKKAPSVNEEEITFA---DDGHRELLITTKIPMLDENSQLVGVLGIGH 316 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR- 494 + ++ ++ +E QL +LE G + +S N + + GY ++I + Sbjct: 317 DTTQQKMAEQALENSEQQLRFVLEGAELGFWDWDIAAGTVSRNERWANMLGYSHDEIRQT 376 Query: 495 -KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + +T F+ + S + L K+ ++ + K + + Sbjct: 377 TQQWTDFIFPDDRSRAWDSINAALE-GRASMHRLEYRMLRKDGSIIWILDQAKVMQRDAQ 435 Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLA 590 T DISE K +L+ ++ AE + KS FLA Sbjct: 436 GKPLRMCGTHTDISEIKATHEELTQHRRHLEKLVGERTHELTLAKEAAETATIAKSAFLA 495 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTPL AI G + +++ P + + I+ +G +L+I+N +LD+SKI Sbjct: 496 NMSHEIRTPLNAITGMTHILRRSGLSP----EQTDKLDKIEGAGKHLLEIINAILDLSKI 551 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E+GK+ L PV + + S++ A I I +L D ++Q LN Sbjct: 552 EAGKLTLESVPVHVGSLLENVASMLSQRARALGIAINLEPITISSPLLGDPTRLQQALLN 611 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 +NA+ FT G I + + E + V DTGVG+ L K F Q NS Sbjct: 612 YATNALKFTEQG-HITLRVKEEAQTEERVTLRFEVSDTGVGIAPNILPKLFGTFEQADNS 670 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + GTGLGL + K + + G + S +G+ Sbjct: 671 TTRKYGGTGLGLAITKKLAELMGGTVGVSSIEGQGSTFWFS 711 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 34/313 (10%), Positives = 82/313 (26%), Gaps = 20/313 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142 W D+ G + + G +++G D D D + + + K+ + Sbjct: 218 LIWLKDSKGVYLACNHRFEQFFGASEPEIVGKTDYDFVDKALADFFRAHDLAAMEKKAPS 277 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G + +P+ N + G G G H + ++ Sbjct: 278 VNEEEITFADDGHRELLITT--KIPMLDENSQLVGVLGIG--HDTTQQKMAEQALENSEQ 333 Query: 203 KFSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKT 256 + + E + G + + + L + T D Sbjct: 334 QLRFVLEGAELGFWDWDIAAGTVSRNERWANMLGYSHDEIRQTTQQWTDFIFPDDRSRAW 393 Query: 257 EKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAY 314 + +S+ E + + +Q ++ + S Sbjct: 394 DSINAALEGRASMHRLEYRMLRKDGSIIWILDQAKVMQRDAQGKPLRMCGTHTDISEIKA 453 Query: 315 FDEGENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 E ++K + + A +FL ++ + G++ Sbjct: 454 THEELTQHRRHLEKLVGERTHELTLAKEAAETATIAKSAFLANMSHEIRTPLNAITGMTH 513 Query: 369 LLDAPKLSDNNAI 381 +L LS Sbjct: 514 ILRRSGLSPEQTD 526 >gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 801 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 99/387 (25%), Positives = 181/387 (46%), Gaps = 21/387 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R ++ + +++E + + + + NR+ + LFGY V D+ Sbjct: 256 QERRSLQQSESRFRTLVETSPIPMLVTRAAPNQRVALMNRSFTDLFGYTVADVPDIHHWW 315 Query: 500 FLEQNTPSVMNHYLT---------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 L P+ + + + + + + + + + Sbjct: 316 PLAYPDPTYRQEIQQLWQARVEEMSLKKTQIMHPVTANVTCNNGNIRFIEVHMSVI---- 371 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + D++ KQE +L AK+ AE + K DFLA +SHEIRTP+ ++G EV+ Sbjct: 372 DDHALVIFQDLTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVL 431 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + E + + ++G +L ++N +LD+SK+++G + L E ++L E + E Sbjct: 432 QESTL----DQEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKE 487 Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + LV + A+EK +L+ ++P ILAD ++QI N+L NAI FT G + I+ Sbjct: 488 VVGLVAVLASEKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEKGS-VNITL 546 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + +++ L +RDTG+G+ +PF Q + R GTGLGL L++ +V+ Sbjct: 547 SMRDPQQLALVIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMH 606 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+ + S GT EI+ P+ T P Sbjct: 607 GQIRMDSQLGCGTQFEILLPVERTQPP 633 >gi|284165631|ref|YP_003403910.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284015286|gb|ADB61237.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 767 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 106/752 (14%), Positives = 245/752 (32%), Gaps = 45/752 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +DA I++ + G ++G + V D L+ Sbjct: 34 VYQLDAAERFVTINDRFVELTGYARDALLGEHVSLVFDETDRQRVKRELSELRTTGGRRN 93 Query: 146 KTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGF---RGFGIVHVNRVDNDPRALGKRLD 201 +T + + +L P+ G R NR +R + Sbjct: 94 ETIETAVHTADGETIRCELRVHPLSDEVHGSVGVLQERSEPTSDGNRTGRVEAEGRRRNE 153 Query: 202 KKFSHLHEIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKD----DVLKT 256 F L E + S + +++ + D D + Sbjct: 154 VTFRQLVEHLDQVVWMSTADMRETIYVNSAFEEVYGRDRERLYEDPEVLLDAVHPDDREL 213 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + L T E + + + + ++ F + + + Sbjct: 214 LRSELETEVEEPHVIEYRIVQPDGDVRWIHDRVVPVYDDDGNVFRIVGEAMDITERKEHE 273 Query: 317 EGENLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 T ++ V + PSF G Sbjct: 274 RELEDTKSQLEAATEAGAVGTWEWHVRTDEMIVG-PSFARTFGVNPEAA--RDGVSLDRF 330 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 D+ + TC + + ++ + + + E M Sbjct: 331 VEAVHEDDRDRVAAEIEEVVETCGEYESE-YRVRDADGELRWVVARGHIECAENGEAMTF 389 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G + + + + ++E QL ++ E G+ + + +G + N +++G V Sbjct: 390 PGALTDITERKRAELRLEQTTEQLATLFEILPVGVVVADSDGGFVEANETAKEIWGGDVF 449 Query: 491 DIL----RKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 D+ + +T + ++ V + ++ +++ Sbjct: 450 DVESVAEYERYTGWWAESDEPVEPEEWTMSRVLEGEEVTDPDIYEIETVDGARRIIQAEG 509 Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + +T+ DI+E + ++ E+ + F SH+++ PL Sbjct: 510 MPVWDADGDVTRGVVTISDITERRA-------YQRKLEESNERLEQFAYAASHDLQEPLR 562 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 + + + + R+ + E+ + + + +++ LL+ S++E+ FEP Sbjct: 563 MVTSYLQ-LLESRYADAFDEDGREFLEFAVDGADRMRAMIDGLLEYSRVETRGDP--FEP 619 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 L++ + + S +QL E I T ++PR+ D+ ++Q+ N+LSNAI ++ Sbjct: 620 TDLNDVLEDVRSDLQLQIEESGAEITTE---DLPRVNGDVDQLRQLFQNLLSNAIIYSGE 676 Query: 722 GG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G ++ + + V + V D G+G+ + E+ F ++ + + EGTG+GL L Sbjct: 677 GSPRVRVDARRRGRQWV-ISVEDNGIGIDPEDQERIFTVFDRLHS--REEYEGTGIGLAL 733 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + +V+ + G+ ++ S G + P Sbjct: 734 CERIVERHGGEIWVDSEAGDGATFSMTLPAAR 765 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 1/113 (0%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + +++ DG+ ++ ++ N +L GY + +L + ++ ++ + Sbjct: 21 RRYQTLVNEIDDGVYQLDAAERFVTINDRFVELTGYARDALLGEHVSLVFDETDRQRVKR 80 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563 L+E+ + R+ T T + + + + + L + + SE Sbjct: 81 ELSELRTTGGRRNETIETAVHTADGETIRCELRVHPLSDEVHGSVGVLQERSE 133 >gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908] Length = 1168 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 116/520 (22%), Positives = 208/520 (40%), Gaps = 49/520 (9%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE--------- 361 + + + F + G + NP+ L Y + + Sbjct: 230 AKELEGANTRLNTILSAAVDGFIIIDVYGVITQVNPAICRLFGYMEDEIVGKNVSIFMPS 289 Query: 362 -----IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 L ++ + + + M D + + +E Sbjct: 290 YERHTHNAFLKRFIEGKREAVERNGREFMALHKDGNLFPIELSISKMTIEKE-------- 341 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + G+ + D + + + + L + LEA+ D + I+ G I Sbjct: 342 -----------IMLLGLVKDLSDIKQKEIEAKRTESILLATLEASQDALITIDIAGKIQE 390 Query: 477 TNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGST 533 N A S+LFG+ E ++ + + L E ++K + Sbjct: 391 FNEAASQLFGHDKESVIGEQLAEVIFTDIEKACFKEGLEEFRQTGDGPAIKKSIELMSMK 450 Query: 534 KEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + L + +I +L + +HDIS+ + + +L +AK+ AE S KS FLA Sbjct: 451 LDGSTLPIELKMIPVQLGDDIFLTAFIHDISKRMEYELQLKNAKEEAESGSKAKSRFLAT 510 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIR+PL A++G E++ + N YA +G +L +ND+LD SKIE Sbjct: 511 MSHEIRSPLNAVLGSVELLLDSML----NKEQRLYAQTAREAGTALLSTINDILDFSKIE 566 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALN 710 +G+M L E S + VS+ + ++ A EK + + T N+P I+ D + ++Q+ N Sbjct: 567 AGQMALETESFSPAKLVSQVMQILAPKAAEKGVNLATFINRNVPEIVKGDAQRLRQVLHN 626 Query: 711 ILSNAIHFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766 ++ NAI F+ SG I + ++EV L V D G+G++ EK + F Q+ + Sbjct: 627 LVDNAIKFSDSG-CISVEMWIPDSHHQEVQLYCTVTDEGIGVSLSAQEKLFQEFSQVHDQ 685 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +GTGLGL + ++ GK + S G+ Sbjct: 686 HNTSYKGTGLGLAICSELITMMGGKIELSSRLGHGSCFRF 725 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 17/154 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--------GDLLKRQ 140 ID +G + +++ + + G +++G + +N + ++R Sbjct: 254 IDVYGVITQVNPAICRLFGYMEDEIVGKNVSIFMPSYERHTHNAFLKRFIEGKREAVERN 313 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + +G + + ++ + I +E G+V KR Sbjct: 314 G---REFMALHKDGNLFPIELSISKMTI---EKEIM---LLGLVKDLSDIKQKEIEAKRT 364 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 + E + I L Sbjct: 365 ESILLATLEASQDALITIDIAGKIQEFNEAASQL 398 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 22/246 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQN---- 141 ID G ++E +E + G+ +IG +L +V I+ + + + + Sbjct: 382 IDIAGKIQEFNEAASQLFGHDKESVIGEQLAEVIFT-DIEKACFKEGLEEFRQTGDGPAI 440 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + ++G+ +PI+L +P+ + F +H + K Sbjct: 441 KKSIELMSMKLDGST--LPIELKMIPVQLGDDIFLTA----FIHDISKRMEYELQLKNAK 494 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYP 260 ++ + K + + P + V L + +K+ L + Sbjct: 495 EEAESGSKAKSRFLATMSHEIRS-------PLNAVLGSVELLLDSMLNKEQRLYAQTARE 547 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 T+ S++ + DF I Q + + + + L+ + Sbjct: 548 AGTALLSTINDILDFSKIEAGQMALETESFSPAKLVSQVMQILAPKAAEKGVNLATFINR 607 Query: 321 LTPETV 326 PE V Sbjct: 608 NVPEIV 613 >gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp. TrichSKD4] Length = 812 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 116/650 (17%), Positives = 238/650 (36%), Gaps = 28/650 (4%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRL-------DKKFSHLHEIKKGHSSVEKEKYDIF 225 +G + + +A L + + + + Sbjct: 166 GRTTGGAVVLRLRDMTGERQIQAEISARNAKISGELHMLHSLLDALPSPAWQRDAEGKLI 225 Query: 226 SQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + ++ +++ E D + +E+ + + Sbjct: 226 WVNQAYATAIDAPDQKAAIKEGDDFLDSAA-RDAAGKNRNEDGCFTARIPMVAAGERRV- 283 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFY 343 + N + + + E T+D+ +Y L + Sbjct: 284 --FEVTDVAANVGGAGVAIDISELDQVRRELSRAEEFHGRTLDQLVTAVAIYGGDRKLQF 341 Query: 344 ANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 N +F L + + ++ G + L A + A V + + + H Sbjct: 342 HNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQADYRVWRNTMLESYQSVETKEH 401 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 +L + P + E +D + + LE Sbjct: 402 WWHLPDGRTLRVVASPHP----QGGVIYIYENVTERLDLESRYNALIRVQGE---TLENL 454 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYLTEILSL 519 S+ +A+ +G + N A S+++ + + + + P LE + + Sbjct: 455 SEAVAVFGSDGRLRLWNPAFSRIWNFEEDRLSQLPHVNQLESTCALSPAEQEAWDRLSAN 514 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + E ++ +T D+++ + L + E Sbjct: 515 VTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALVEKNEALE 574 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + K+ F+ VS+E+R+PLT IIGF++++ + +FG L + EYA+YI S + +L Sbjct: 575 QADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDLS-EKQGEYADYIRSSSSALLA 633 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 I+ND+LD++ +++G M L V + V A+ ++ E RI +RT +NI ++A Sbjct: 634 IINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLRTDVPDNIGSMVA 693 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D + ++Q+ N++SNA+ ++ G + + + +E V V+D G G+ L + Sbjct: 694 DEKRLRQVLYNLISNAVRYSEEEGVVDV-VCNRKDEAVEFVVKDHGCGIPADILTQVFNR 752 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 F N+ R +G GLGL + K+ V+ + GK I S KGT + FP Sbjct: 753 FV-GHNAGARR-QGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCSFP 800 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 43/388 (11%), Positives = 94/388 (24%), Gaps = 27/388 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W DA G L +++ I K D D D K +N Sbjct: 216 WQRDAEGKLIWVNQAYATAIDAPDQKAAIKEGDDFLDSAARDAAG------KNRNEDGCF 269 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T P+ ++ G G+ + R R ++ Sbjct: 270 TARIPMVAAGERRVFEVT-----DVAANVGGA---GVAIDISELDQVRRELSRAEEFHGR 321 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + ++ + L SS + + Sbjct: 322 TLDQLVTAVAIYGGDRKLQFHNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQAD 381 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHPSLSAYFD 316 E + ++ ++ G Y + L + ++ Sbjct: 382 YRVWRNTMLESYQSVETKEHWWHLPDGRTLRVVASPHPQGGVIYIYENVTERLDLESRYN 441 Query: 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + ET++ V+ S G L NP+F + ++ D + ++ L L Sbjct: 442 ALIRVQGETLENLSEAVAVFGSDGRLRLWNPAFSRIWNFE-EDRLSQLPHVNQLESTCAL 500 Query: 376 SDNNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 S L + + + + ++ + L +P + Sbjct: 501 SPAEQEAWDRLSANVTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSV 560 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATS 462 + +E + ++ S Sbjct: 561 NVERALVEKNEALEQADELKNAFIQHVS 588 >gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium modesticaldum Ice1] Length = 477 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 86/425 (20%), Positives = 177/425 (41%), Gaps = 22/425 (5%) Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + E ++ ++ E V T+I ++ Sbjct: 75 WSGQLAKTLEEYTRVVHRLEAGHGACHYLMDQPDELGRLARAIHQTVETVRTKI--HQLS 132 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + + +ILE+ +G+ + G IL N A ++ E + K Sbjct: 133 QDKTKFETILESMIEGVVGFDHMGRILLMNSAAEQMLRVQSERVRGKLLLEAFRH---RE 189 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + LT+ L+ Q + + + + + + ++ + D++E ++ + Sbjct: 190 LEGLLTQALNTGKAQKKQMQLWPNKPQTFRVQVVPVWTDQRRLLGAAMVIDDVTEVRRLE 249 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +++F+A VSHE+RTPLT+I GF E + + + + Sbjct: 250 --------------QMRTEFVANVSHELRTPLTSIKGFVETLLDGALD--DTKVARRFLS 293 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ + ++ DLL +S+IES + L+ + +L++ A +KRI ++ Sbjct: 294 IINEETQRLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQV 353 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 N+P + ++KQ+ +N+ NAI +TP GGQ+ + + VIL V+DTG+G+ Sbjct: 354 DVETNLPLLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVR-ATRGCDSVILEVQDTGIGI 412 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + + F ++ ++ GTGLGL + K +++ + G+ + S G+ + F Sbjct: 413 PEESLPRIFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTF 472 Query: 809 PLYDT 813 P+ + Sbjct: 473 PVAEE 477 >gi|90418499|ref|ZP_01226411.1| putative two-component signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] gi|90338171|gb|EAS51822.1| putative two-component signal transduction histidine kinase [Aurantimonas manganoxydans SI85-9A1] Length = 1302 Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 106/663 (15%), Positives = 223/663 (33%), Gaps = 46/663 (6%) Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 ++ ++L I +R RE NR D +G + H+ + Sbjct: 529 RREESIRNTVELKTHAIAARERE------------NRAIVDTAVVGFIVLDCAGHILSVN 576 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + ++ D + L + + + + T ++ P Sbjct: 577 RAVEAIFGHTADEIRNRHVETILSYDAITAVTLATAVGEGEPASDSPVVIRTRSKAGKPL 636 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 D + + + + + + + E ++ I Sbjct: 637 YLDVQRNDWSTESGDLRHTLIIRDVTAQRLAV---------EALEANERRWNHALEGAGI 687 Query: 332 PFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 F + + ++ + + DDIE + L A++ D Sbjct: 688 GVFDIDFRRGQSFVSDTWKQMLGFSPSDDIEPRAEWLARIHPEDLPALKAVEDAYY---D 744 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + A + + + + ++ + M G + E + + + + Sbjct: 745 TATFRSEAEYRIRRKDNVWIWLRSDSIVIERDKAGQPMRVIGTQSEITELKTAEAALRSS 804 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 ++ L G+A+++ G + N+A+ GY +++L++ + + Sbjct: 805 EERVRLALRDAPVGMAMLDLNGGWIRVNQALCAFLGYSEDELLQRDLAAVTHPDDVGIDR 864 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQE 567 + ++++ L T + ++ + L + + + DI++ K Sbjct: 865 EQMAQMIAQTLP-TYQVEKRFLHRDGRALWCLFSVSLVHDHDGQAYLVSHVQDINDRK-- 921 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + K++F+A VSHE+RTPLT+I G + P Sbjct: 922 ------------EMDRLKNEFVATVSHELRTPLTSIRGSL-GLIQGVMAKDVPPAATRLL 968 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + ++ ++ND+LD+ KI +G M V + AVS+AI Q Y + + Sbjct: 969 TIAVANCERLVALINDILDLEKITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVA 1028 Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + I D +Q+ N+LSNA F+P GG I ++ + + V D G Sbjct: 1029 FNATGKGEAWIPVDPARFQQVLANLLSNAAKFSPQGGIIDVAIEPID-GAIRISVTDHGT 1087 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + F Q +S GTGLGL + + +++ G + P G I Sbjct: 1088 GIPAEFQSRIFDRFTQADSSATREKGGTGLGLHITRQIIETMGGTIDFANVPGAGARFWI 1147 Query: 807 IFP 809 P Sbjct: 1148 DMP 1150 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 33/421 (7%), Positives = 103/421 (24%), Gaps = 42/421 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G++ ++ + G+ A ++ + + I + + Sbjct: 566 LDCAGHILSVNRAVEAIFGHTADEIRNRHVETILSYDAITAVT-LATAVGEGEPASDSPV 624 Query: 149 LWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G LY+ + + E R I+ + +++++ Sbjct: 625 VIRTRSKAGKPLYLDVQ-----RNDWSTESGDLRHTLIIRDVTAQRLAVEALEANERRWN 679 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258 H E + P ++ + L + LK + Sbjct: 680 HALEGAGIGVFDIDFRRGQSFVSDTWKQMLGFSPSDDIEPRAEWLARIHPEDLPALKAVE 739 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHP----SLSA 313 + + + + ++ + + + + ++ + A Sbjct: 740 DAYYDTATFRSEAEYRIRRKDNVWIWLRSDSIVIERDKAGQPMRVIGTQSEITELKTAEA 799 Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + P+ + +G N + Y + ++ L Sbjct: 800 ALRSSEERVRLALRDAPVGMAMLDLNGGWIRVNQALCAFLGYSEDELLQR-----DLAAV 854 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TFIPFEKANQFPENMPQN 431 D + M +T + + + + + + Sbjct: 855 THPDDVGIDREQMAQMIAQTLPTYQVEKRFLHRDGRALWCLFSVSLVHDHDGQAYLVSHV 914 Query: 432 GIEPEDVD-TRINKRKMEIEVMQLCSILEATS------DGIAIINREGIILSTNRAVSKL 484 + + R+ + +L + L + G+ + A ++L Sbjct: 915 QDINDRKEMDRLKNEFVATVSHELRTPLTSIRGSLGLIQGVMAKD-------VPPAATRL 967 Query: 485 F 485 Sbjct: 968 L 968 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 26/325 (8%), Positives = 83/325 (25%), Gaps = 16/325 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146 +D +G +++ L +G +++ L V+ + + + + T+ + Sbjct: 822 LDLNGGWIRVNQALCAFLGYSEDELLQRDLAAVTHPDDVGIDREQMAQMIAQTLPTYQVE 881 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + + ++ + + + + HV +++ + + + Sbjct: 882 KRFLHRDGRA--LWCLFSVSLVHDHDGQ-----AYLVSHVQDINDRKEMDRLKNEFVATV 934 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 HE++ +S+ I + + L + L +L E+ Sbjct: 935 SHELRTPLTSIRGSLGLIQGV----MAKDVPPAATRLLTIAVANCERLVALINDILDLEK 990 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + Q Q ++ A+ + + Sbjct: 991 ITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVAFNATGKGEAWIPVDPARFQQVL 1050 Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 +S G + + + + + G+ + Sbjct: 1051 ANLLSNAAKFSPQGGIIDV--AIEPIDGAIRISVTDHGTGIPAEFQSRIFDRFTQADSSA 1108 Query: 386 LYRSDRTCIAASARLHTIQWNRENS 410 T + I+ Sbjct: 1109 TREKGGTGLGLHITRQIIETMGGTI 1133 >gi|157374520|ref|YP_001473120.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] gi|157316894|gb|ABV35992.1| Signal transduction histidine kinase-like protein [Shewanella sediminis HAW-EB3] Length = 1468 Score = 345 bits (886), Expect = 2e-92, Method: Composition-based stats. Identities = 94/498 (18%), Positives = 189/498 (37%), Gaps = 19/498 (3%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 +D+ I G + Y N F ++ Y S + + G + + K + Sbjct: 445 LDQHSIVAVTDLKGTITYVNQLFTEISGYASEELL----GRNHRILNSGHHPRGFFKQMY 500 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + A + + I + + Sbjct: 501 EVITKGEVWNAEICNRA---KNGTLYWVDTTVVPLKDAEGHPHSYIAIRTDITERMTASI 557 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 K + + S+LE+T +GI + + +G IL N +L+ + ++ + + Sbjct: 558 KANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDKTLIGRDDSEIAHYAK 617 Query: 506 PSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDIS 562 +++ ++ I L LE + + ++ + + + + D++ Sbjct: 618 SQLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERVSLPMMSEGGVLGRVWSFRDVT 677 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + +++L AK+ AE KS+FLA +SHEIRTP+ ++G ++ N + + Sbjct: 678 ESMKIRSELMLAKEGAELAVKAKSEFLASMSHEIRTPMNGVLGMLGLLLNTKL----SDF 733 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + S +L ++ND+LD SKI++GK+ L +L + E + A +K Sbjct: 734 QRRRVSIAQSSAESLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAHLAQDK 793 Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEV 737 + + + D ++Q N+ NAI FT G +I + + + Sbjct: 794 DLELILDVKGVEYSMVNGDPGRLRQALTNLTGNAIKFTKQGEVVIKAELVPCDDETLWRL 853 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V DTG+G+ +++ F Q+ S + GTGLGL + + + G + S Sbjct: 854 KCSVSDTGIGIAEDKIDSLFDSFSQVDASTTRKYGGTGLGLAIVDKVCNLMGGSVSVESE 913 Query: 798 PAKGTLIEIIFPLYDTSH 815 G+ L ++H Sbjct: 914 EGVGSCFRFEVSLGRSTH 931 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 29/268 (10%), Positives = 67/268 (25%), Gaps = 12/268 (4%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 L+S F ++ D G + +++ + G + +++G ++ H Sbjct: 435 LESLEGQKFALDQHSIVAV--TDLKGTITYVNQLFTEISGYASEELLGRNHRILNSGHHP 492 Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + +++ + W + GT +V + +P+ + I Sbjct: 493 RGFFKQMYEVITKGEVWNAEICNRAKNGTLYWVDTTV--VPLKDAEGHPHSY--IAIRTD 548 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSL 243 + E V + I + + K + Sbjct: 549 ITERMTASIKANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDKTLIGRD 608 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 AH + + E PE E F T+ + + Sbjct: 609 DSEIAHYAKSQLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERVSLPMMSEGGVLG 668 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + S L E + Sbjct: 669 RVWSFRDVTESMKIRSELMLAKEGAELA 696 >gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3] gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3] Length = 775 Score = 345 bits (886), Expect = 2e-92, Method: Composition-based stats. Identities = 113/544 (20%), Positives = 224/544 (41%), Gaps = 51/544 (9%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360 Y+ + F E + + + + + + S + Sbjct: 237 YMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSTRRMFWSGSLYEILGRPPKAAP 296 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + ++ + + + V C + + + Sbjct: 297 LSFSDAARMMHSEDGNLYELARAV-------GCGDLRQIDQIFRMRHAKGHYVWLRARAQ 349 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + GI + + ++ +L +E+TS+ + ++ ++ N Sbjct: 350 VIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNTH 409 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 K +G P ++ + + + ++ + L ++T +++ L Sbjct: 410 YQKAYGLPDSVLVAGTEKSAV---QAAAARPVVERRVADPDQSGLSRMTEVQLADDRWLQ 466 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------- 573 + + DI+ K+ + +L Sbjct: 467 INERRTR---DGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELS 523 Query: 574 --------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 K+ A+ + KS+FLA +SHE+RTPL AI+GFS++++N+ FGP+G+P+Y E Sbjct: 524 DANANYLAEKERAQAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSE 583 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I SG +L+++ND+LD+SKIE+G M ++ E + L + E + L + A +K I Sbjct: 584 YARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNIT 643 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 ++ + + D R++KQI LN+LSNA+ FT +GG++ + T + L + DTG Sbjct: 644 VQQKVCAGL-TMQGDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMI-LTIADTG 701 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L+K +PF Q+ + G+GLGL +++++V + G I S +GT++ Sbjct: 702 IGIPAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVT 761 Query: 806 IIFP 809 II P Sbjct: 762 IIIP 765 >gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814] gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814] Length = 752 Score = 345 bits (886), Expect = 2e-92, Method: Composition-based stats. Identities = 116/420 (27%), Positives = 189/420 (45%), Gaps = 47/420 (11%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 P +GI + + + + + S+ +A A ++ +L NR + Sbjct: 336 GGPFQDGLSGIMTDTTERVRAEARSRMSEHLARSVADAYPGPFASWDQRHRLLLWNRHFA 395 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +LF P + + + +E+ GS ++L L Sbjct: 396 RLFNLPENVLKAGTSYDVVMAEAAKQIR--------------IERPVPGSDNGREILLLS 441 Query: 543 IIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------------ 580 I + DIS K + L +K + Sbjct: 442 DIWLNFYDRPTAGGGLVTVGLDISSIKNHQESLLGKEKKLRRLVLELDRMQGQSEEHARK 501 Query: 581 ----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 S KS FLA +SHE+RTPL AI GFSE++ + +GPLG+ RYI YA I Sbjct: 502 YAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAEDI 561 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 SG +LD++ND+LD++KIE+GKM++ + EAV A+ +++ A +K I + + Sbjct: 562 LSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNLTV 621 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++IP I D R++KQ+ LN++SNAI FT GG I IS N V + V D G+G+ Sbjct: 622 KDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISV-VKENAFVRVSVADNGIGIPK 680 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + +PF Q + +G+GLGL L K+ + + G+ I S +GT + + P+ Sbjct: 681 QDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLPV 740 >gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase [Tepidanaerobacter sp. Re1] Length = 581 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 173/363 (47%), Gaps = 22/363 (6%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ++ + ++L + ++G+ ++ I+ N A KLF ++ L + L Sbjct: 239 LKDGRDKTEAVLSSMAEGLIAVDHNCHIVMMNSAAEKLFKIKKDEFLGRHLLEMLR---N 295 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + + +L+ + L + T EK+ + I +S + + DI++ ++ Sbjct: 296 KELYDLVNTVLTT--SKNLSQELKIITSTEKIFYINISPINKIENSGAVIILRDITDLRK 353 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +++F+A +SHE++TPLT+I GF E + + + + +Y + Sbjct: 354 LE--------------KVRTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKY--F 397 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I + + + ++N+LL S IE + +PV + E + +A+S++Q NEK+ + Sbjct: 398 LGIIKQETDRMTRLINELLYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKV 457 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 NI IL++ S+ QI +N+L NAI +TP GG I I + E V++ V D G+ Sbjct: 458 NLKLPENIAHILSNEDSLLQIMINLLDNAIKYTPEGGTISIMVE-ETLENVLITVADNGI 516 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ EL++ + F ++ ++ GTGLGL + K +V G + S KGT + Sbjct: 517 GIAEDELDRIFERFYRVDRARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTV 576 Query: 807 IFP 809 P Sbjct: 577 YIP 579 >gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 576 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 123/569 (21%), Positives = 217/569 (38%), Gaps = 51/569 (8%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANPSFLL 350 + R + + + T D HG + N Sbjct: 6 VDQPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGAER 65 Query: 351 LTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASARL 400 + Y S D ++ L+ + P+ L I L Sbjct: 66 MLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYEL 125 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQ 453 I+ + AM + + I ++ + + +++ + Sbjct: 126 TYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQFY 184 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 S++E+ D + + + +GII N+ + L G ++++ P F P+ + + Sbjct: 185 TRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAI 242 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571 +LS E E ++S D++E K+ + L Sbjct: 243 KRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFERTL 302 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 E S KS+FLA +SHE+RTPL A+IGFSE +K+ G + + Y I Sbjct: 303 EEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMTDA-QRRYIGDIF 361 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L ++ND+LD+SK+E+G M L E V LDE +S ++ +V+ A +RI ++ Sbjct: 362 NSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETE 421 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------------ 739 + + D R KQI N+L+NA+ F+ GG + ++ S +V + Sbjct: 422 ADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVSILDGDWPVHSVPL 481 Query: 740 -----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 V DTG+G+ ++ K K F QI +S + EGTGLGL + K + + + Sbjct: 482 PPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTELH 541 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 G + S G + P+ + Sbjct: 542 GGCVAVASVKDLGARFVVWLPIRPPATEE 570 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 L + + + L + + R L D Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423 Score = 45.4 bits (106), Expect = 0.042, Method: Composition-based stats. Identities = 41/454 (9%), Positives = 113/454 (24%), Gaps = 49/454 (10%) Query: 43 NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEE 101 NP D + + S + + D I + F+ D HG ++ + Sbjct: 3 NPPVDQPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVG 62 Query: 102 LPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGDLL----KRQNTWY 144 + +G ++ ++ D+SD + P + L R Sbjct: 63 AERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDI 122 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-----RALGKR 199 + T +G+ + ++ + G+ G + R + + Sbjct: 123 YELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRD 180 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 L E + + I R ++++ D Sbjct: 181 QQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDPASADA 240 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + SE + + + T + ++ + + F+ Sbjct: 241 AIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFER 300 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 ++ + FL ++ ++ G Sbjct: 301 TLEEKNIELEHAS------------HMKSEFLATMSHELRTPLDAVIG----FSEALKDG 344 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 R + L ++ + L ++ + E + + + Sbjct: 345 MVGDMTDAQRRYIGDIFNSGQHLLSLIND---ILDLSKVEAGMMLLELEAVDLDELLSNS 401 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + ++ ++L + G+ ++R Sbjct: 402 LLIVREQAALQRIQLKLET---EADFGVLELDRR 432 >gi|327541216|gb|EGF27760.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 1150 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 103/575 (17%), Positives = 201/575 (34%), Gaps = 57/575 (9%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + + + + +LQ D+ E +D+ Sbjct: 115 LQGRLRTRLKHQRTLQHRVHRRSLQIRRVNRALRNEVTRRQETQHRLDQSETTFQSLIDR 174 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + S G YAN F VD I G L + + + Sbjct: 175 MHLQVARKSAEGVFTYANEQFCADIGMTPVDVI---GSTDAELFGDSIGAKYRADDLSVM 231 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + + +Q + + I + + N+ + Sbjct: 232 STGQAVDKVEVHPGP----DGRIGFAQVFKAPEYDQNGQCVGVQIIFWDITEKHRNEIAL 287 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + ++ +A D + +I+ + I+ N + S+L ++ +P + + Sbjct: 288 RDSEARKRALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQ 347 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWK 565 L + + I + ++ ++ + D++ + Sbjct: 348 W----------GGLPLAERHQLRLRRGDGSSFESEVSIHHIPVGDATGQAVIIRDVTLQR 397 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + AK AE+ + K+ F+A +SHE+RTPL I G ++++ Q Sbjct: 398 AAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQTLPTAA----RR 453 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N I ++ L+ D++ D+LD + IE+G++ + PV L E V +A + + +K + Sbjct: 454 YVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFGCLAVRVADKPVR 513 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------- 737 + S A + PR ++AD + ++QI +N+ NAI FT G +S +V Sbjct: 514 LCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRG---EVSLRLGPIGDVPPSHSND 570 Query: 738 --------------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 L V DTG+G+ + F Q + GTGLG Sbjct: 571 ANSPELTTNESTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGTNKQFGGTGLG 630 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPL 810 L +A+ + G + S G+ + + PL Sbjct: 631 LAIARGLAQRMGGDITVTSQVDLGSQFQCALALPL 665 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 35/369 (9%), Positives = 93/369 (25%), Gaps = 25/369 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146 A G +E+ IG +IG ++ D + ++ Sbjct: 181 RKSAEGVFTYANEQFCADIGMTPVDVIGSTDAELFGDSIGAKYRADDLSVMSTGQAVDKV 240 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G + + P Y +N + G + I + + + + Sbjct: 241 EVHPGPDGRIGFAQV--FKAPEYDQNGQCVGVQ--IIFWDITEKHRNEIALRDSEARKRA 296 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLKT 256 L + + ++ I L R N + S + + Sbjct: 297 LFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQWGGLPLAER 356 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + L + SS + H I + T + +++ + + + + R + + + Sbjct: 357 HQLRLRRGDGSSFESEVSIHHIPVGDATGQAVI--IRDVTLQRAAFEAMREAKAAAEQAN 414 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + G + T + +T L + Sbjct: 415 RTKTQFMAGISH----ELRTPLGGIRGLTDLLGQQTLPTAARRYVNLIAQNTELLRDVIE 470 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 D + R + + + +K + ++ + Sbjct: 471 DILDFAAIEAGRVAIDPVPVDLHEVV----GDAFGCLAVRVADKPVRLCLSIAPDTPRRV 526 Query: 437 DVDTRINKR 445 D + ++ Sbjct: 527 IADPKRIRQ 535 >gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501] gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501] Length = 1044 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 174/380 (45%), Gaps = 20/380 (5%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN 504 + + + T+DGI + + + K+ GY + ++ + Sbjct: 572 LRESERRYHLAVSGTNDGIWDWDLRDDTVYYSPVWMKILGYENNPLPHLLSTWSDNVHPE 631 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 + + L E + + + K + + T+ D Sbjct: 632 DYAQAIKDIENHL-QGNTNIYENFHRIRHHDGHYIWIEAKGKCIRYQQGKPYRLVGTITD 690 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ K + L AK+ AE + KS+FLA +SHEIRTP+ AI+GF +++K++ + + Sbjct: 691 ITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKSK----ITD 746 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + Y + IDR G ++L +++D+LDISKIE+GK+++ +EP+ L E + E + A Sbjct: 747 EKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLEKAK 806 Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SN 734 EK++ I + +P ++ D ++QI N++ NAI FT G I IS + Sbjct: 807 EKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEEG-LITISVKRDLLQWKDD 865 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + + ++DTG+G+ + ++ F Q + GTGLGL + + + G Sbjct: 866 QYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGGTI 925 Query: 793 YIFSTPAKGTLIEIIFPLYD 812 + S KG+ ++FP D Sbjct: 926 QLESELGKGSTFTLLFPRVD 945 Score = 42.7 bits (99), Expect = 0.27, Method: Composition-based stats. Identities = 13/139 (9%), Positives = 38/139 (27%), Gaps = 5/139 (3%) Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E V + + + Y +P ++ + Y++ L + Sbjct: 572 LRESERRYHLAVSGTNDGIWDWDLRDDTVYYSPVWMKILGYENN----PLPHLLSTWSDN 627 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ A + + H I+ + + + + Q + G Sbjct: 628 VHPEDYAQAIKDIENHLQGNTNIYENFHRIRHHDGHYIWIEAKGKCIRYQQGKPYRLVGT 687 Query: 434 EPEDVDTRINKRKMEIEVM 452 + + + + +E Sbjct: 688 ITDITNKKAAQEALEKAKE 706 >gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 1132 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 108/512 (21%), Positives = 199/512 (38%), Gaps = 25/512 (4%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E T+ ++ G + N + LL + ++D+ Sbjct: 289 LAKLTEARYRATISTAVDGIITFNAKGRIESGNQAVELLLGW-RLEDVCHQNIRD--FIP 345 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 D + + + + + N + Sbjct: 346 SPFIDEFNARLDSFSNNIGQQKSTGRDVEALHVNGTT---IPVRVSIGHACIEGKSLFVM 402 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYPV 489 + +R + Q S++ GIA +N E ++ + AV + GYP Sbjct: 403 YISDLRHRIEMQRALIKSEAQFRSLITNIP-GIAYRCLNVENWPMVFISDAVENITGYPA 461 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-----SLRII 544 D + Q+ + + D LE + + + L + I Sbjct: 462 SDYIGATPKRHFYQHVHPDDLEQIGNQVVTDQVFKLEYRIYNANGDIRWLLGYGAHVDGI 521 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + + + DI++ K+ + L AK AE+ +S +S FLA +SHEIRTP+ AII Sbjct: 522 DVQDKWLDGFIM---DITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAII 578 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFS+++ + ++ I++S +L ++ND+LD +K++ GK +L S+ Sbjct: 579 GFSDILLDDSLPA----EQQKHLRTINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSV 634 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG 723 E + +S + L A+ K + + + + ++ ++Q+ N++ NAI FT GG Sbjct: 635 IEEIDSVVSTLWLQASSKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGG 694 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + I + + + + DTG+GMT +L F Q S R GTGLG ++K Sbjct: 695 -VSIDVSVKPSGCIEFAINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQ 753 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +V+ GK ST +G+ PL H Sbjct: 754 LVELMGGKITAKSTFGQGSCFGFTLPLTAPKH 785 >gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 1053 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 119/496 (23%), Positives = 216/496 (43%), Gaps = 25/496 (5%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 +A F L +++ S L A + + + + + Sbjct: 42 LHAADLFNQLLSVAPSATLQVTINDSGLTLAGRYPVSVSASAQYMLGMQVNSHRFVCHIA 101 Query: 402 TIQWNRE------NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQ 453 + L + E + E ++ I KR ++ + Sbjct: 102 AKRKTSRDEQEKLRELWLEKGRDELLEELHETNRALAQHQAGLEEEIAKRTKELAVSEEL 161 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +I+E +AII+ +G+IL N+ +GY ++ L +P L+ P + L Sbjct: 162 SRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAAL 221 Query: 514 TEILSLDLRQTLEK---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEK 568 T L ++ +Q L + T++ L+ + + I +L ++ + D++ K + Sbjct: 222 TLPLRVEQQQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAE 281 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L+ AK AE+ KS FLA +SHEIRTP+ AIIG S + P + +Y + Sbjct: 282 QELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVS 337 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S L+L I+ND+LD SKIE+GK+++ SL+E + + A +K + + Sbjct: 338 KIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLF 397 Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743 S IP ++ D + Q+ +N+++NA+ FT G +I +S + +++ V D Sbjct: 398 SLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFNVSD 456 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GMT + + F Q S + GTGLGL +++ +V+ G+ + S P G+ Sbjct: 457 TGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSC 516 Query: 804 IEI--IFPLYDTSHPH 817 F + + PH Sbjct: 517 FTFNAWFDVDENQAPH 532 Score = 38.5 bits (88), Expect = 4.9, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 18/149 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKR 139 ID+ G + ++ T G A + +G L +++ L + P L Sbjct: 176 IDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTL-PLRVEQQQLLN 234 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + +T + +GT + + + ++ I+ N + + + Sbjct: 235 EAFYEAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNE 286 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 K E+K + + Sbjct: 287 AKAKAEEAVEVKSMFLANMSHEIRTPMNA 315 >gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter wiegelii Rt8.B1] Length = 456 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 171/370 (46%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L +IL++ +G+ + IL N A K+ +D++ + Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDLIGRHILEV 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S ++ ++ + K K+ + I+ + + + L + Sbjct: 161 VR---NSKLHDLFEDVKKNKNSSSRSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G + Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAIE 259 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP + + + ID + ++ND+L +S+IE+ K E + LD + + + ++ Sbjct: 260 NPEARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKV 319 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I ++ I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 320 ARNKNITLKKDLNCTDLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G+G++ + + + F ++ S+ + GTGLGL + K +V+ G+ ++ S Sbjct: 379 IEVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEV 438 Query: 799 AKGTLIEIIF 808 +GT I F Sbjct: 439 GRGTKFIIKF 448 >gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter italicus Ab9] Length = 456 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 170/370 (45%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ +L +IL++ +G+ + IL N A K+ +D++ K Sbjct: 101 KVTIEELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAARKILNIKGKDLIGKHILEI 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S + ++ + K K+ + I+ + + + L + Sbjct: 161 VR---NSKLYDLFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +++F+A VSHE+RTPLT+I GF E + R G + Sbjct: 217 DITEMRRLE--------------KIRNEFVANVSHELRTPLTSIRGFIETL---RNGAIE 259 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP + + + ID + ++ND+L +S+IE+ K E LD + + + ++ Sbjct: 260 NPEARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKM 319 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I + I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 320 ARNKNITLIKDLNCPGLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+D G+G++ + + + F ++ S+ + GTGLGL + K +V++ G+ + S Sbjct: 379 IEVKDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEI 438 Query: 799 AKGTLIEIIF 808 KGT + F Sbjct: 439 GKGTKFIMKF 448 >gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 1258 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 195/454 (42%), Gaps = 22/454 (4%) Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 LL +L+ A P D + A I + A+ +A Sbjct: 391 ERLLAVVELATLEAFGPAEQSLLDGA-LPVLAMSLEILERGAKTAALLEETRVQAATLAA 449 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + Q E+++ + E +L IL + +GI + ++G + N A +++ G Sbjct: 450 SERQVAARKEELEAINGQLAEAEERSRL--ILGSVDEGICGLAQDGTMSFVNPAGARMLG 507 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLRQTLEKITLGSTKEEKLLSL 541 Y +++I+ KP P +T L K+ + Sbjct: 508 YGLDEIVGKPLHALAHHTYPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWR-KDGTSFPV 566 Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + +T DI+E K+ L A AE S K+DFLA +SHEIRT Sbjct: 567 EYSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRT 626 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ AIIG S + NPR +Y I +SG +L I+ND+LD SKIE+GK+++ Sbjct: 627 PMNAIIGMSHLALKTEL----NPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVE 682 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717 V LD + +L+ K + + A+++P ++ D + QI +N +NA+ Sbjct: 683 KTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVK 742 Query: 718 FTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT +G +I+++ + + VRDTG+G++ ++ + + F Q S + G Sbjct: 743 FTETG-EIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGG 801 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 TGLGL +++ + + G+ + S P +G+ Sbjct: 802 TGLGLAISRKLAELMDGEVGVESQPGRGSTFWFT 835 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 19/193 (9%), Positives = 57/193 (29%), Gaps = 19/193 (9%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNID-------AHGYLKEISEEL 102 + + ++ + L++ N + + R+ ++D G + ++ Sbjct: 443 QAATLAASERQVAARKEELEAINGQLAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAG 502 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KRQNTWYGK-TTLWPIEGT 155 + +G +++G L ++ + D + + LW +GT Sbjct: 503 ARMLGYGLDEIVGKPLHALAHHTYPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWRKDGT 562 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + P++ + P+ ++ G AL + + + K Sbjct: 563 SF--PVEYSTTPVL-KDGTVVGT--VVTFRDITERKRADALLHQALDRAEAASQAKADFL 617 Query: 216 SVEKEKYDIFSQQ 228 + + Sbjct: 618 ANMSHEIRTPMNA 630 >gi|307153403|ref|YP_003888787.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306983631|gb|ADN15512.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 556 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 93/580 (16%), Positives = 207/580 (35%), Gaps = 77/580 (13%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + ++ ++ ++ + + + +++ Sbjct: 10 HLLNIIEDLEKRLAIAEETLEAIRQGEVDALVIFDSEGEKVFT--LQGSDYVYRLLIEQM 67 Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG---------GLSTLLDAPKLSDNN 379 + G + Y N S L K I + + + Sbjct: 68 KEGAATMTPDGFILYCNQSLADLVKQPLEKVIGSNFKQFICPKDLAICHPIFNHQGEIKT 127 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + L D I + + + + Sbjct: 128 FDEEINLLTGDGREIPVYLSSNELIVEHNVIHYVVV-------------------TDLSQ 168 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + N+ + Q E GIA++ +G L N + ++ GYP ++L K F Sbjct: 169 KKQNEAALRQSEEQFRKAFEYAPIGIALVGLDGQWLKVNSSFCQIVGYPEAELLSKKFQD 228 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 +V Y+ +++ ++ E K+ ++ +++ + S+ + Sbjct: 229 LTVAEDLAVNIKYINQLIRGEMNA-YEIKKRYIHKDGHIVWVQLHSSLIRDSNGKPQHFI 287 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DI++ + + K +F+A VSHE+RTPLT+I G ++ + Sbjct: 288 TQVEDITQRELME--------------QMKKNFIALVSHELRTPLTSIHGSLGLLAAGIY 333 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + + N ++ +VND+L + +++S + L + ++ + ++I + Sbjct: 334 DKAPD-KMKKMLQIAATQTNRLVALVNDILSLERMDSSRYKLSKQTCNVKTLIEQSIDAM 392 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + I+ +T AN ++ A+ ++ Q+ +N+L+NAI F+P I+IS Sbjct: 393 LGLAEQNSIIFKTDVAN--LKVWANADAIIQVLINLLNNAIKFSPPNTTIVISAELFEAS 450 Query: 736 ------------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 V+ ++ D G G+ +LE +PF QI +S Sbjct: 451 KSQTIKVPKACLSSTCDCSGSFYPYVLFKIEDQGRGIPPDKLETIFEPFLQIDSSDSREK 510 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GTGLGL + +++ + G+ ++ S +G++ PL Sbjct: 511 GGTGLGLAICHSIIKQHHGEIWVTSILGQGSIFYFTLPLS 550 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 11/125 (8%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F + PI + + G +++ + +G +++ + D++ + N Sbjct: 186 AFEYAPIGIAL-----VGLDGQWLKVNSSFCQIVGYPEAELLSKKFQDLTVAEDLAVNIK 240 Query: 133 -IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190 I L++ + N + K +G V + L + I N + F V Sbjct: 241 YINQLIRGEMNAYEIKKRYIHKDGHI--VWVQLHSSLIRDSNGKPQHF--ITQVEDITQR 296 Query: 191 NDPRA 195 Sbjct: 297 ELMEQ 301 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 72/243 (29%), Gaps = 11/243 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G++ ++ L + K+IG + + I + T+ + L Sbjct: 76 PDGFILYCNQSLADLVKQPLEKVIGSNFKQFICPKDLAICHPIFNHQGEIKTFDEEINLL 135 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G +P+ L++ + + +V A ++ +++F E Sbjct: 136 --TGDGREIPVYLSSNEL-IVEHNVIHYV---VVTDLSQKKQNEAALRQSEEQFRKAFEY 189 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYPLLTSE 265 ++ S + + L A V L+ E Sbjct: 190 APIGIALVGLDGQWLKVNSSFCQIVGYPEAELLSKKFQDLTVAEDLAVNIKYINQLIRGE 249 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 ++ ++ + + + + + +++++ + +++ + ++ + Sbjct: 250 MNAYEIKKRYIHKDGHIVWVQLHSSLIRDSNGKPQHFITQVEDITQRELMEQMKKNFIAL 309 Query: 326 VDK 328 V Sbjct: 310 VSH 312 >gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451] Length = 1053 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 115/423 (27%), Positives = 200/423 (47%), Gaps = 19/423 (4%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIA 466 L E ++ E ++ I KR ++ + +I+E +A Sbjct: 115 RELWQEKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVA 174 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 II+ +G+IL N+ +GY ++ L +P L+ P + LT L +D RQ L Sbjct: 175 IIDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTLPLRVDQRQLLN 234 Query: 527 K---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + T++ L+ + + I +L ++ + D++ K + +L+ AK AE+ Sbjct: 235 EAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS FLA +SHEIRTP+ AIIG S + P + +Y + I S L+L I+ Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVSKIHSSATLLLGII 350 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD SKIE+GK+++ SL+E + + A +K + + S IP ++ D Sbjct: 351 NDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGD 410 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756 + Q+ +N+++NA+ FT G +I +S + +++ V DTG+GMT + Sbjct: 411 PLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNL 469 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814 + F Q S + GTGLGL +++ +V+ G+ + S P G+ F + + Sbjct: 470 FQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNAWFDVDENQ 529 Query: 815 HPH 817 PH Sbjct: 530 APH 532 Score = 39.6 bits (91), Expect = 2.4, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 20/205 (9%) Query: 35 ETEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92 E + + + H++ + QE T L I ID+ Sbjct: 120 EKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQ 179 Query: 93 GYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKRQNTW 143 G + ++ T G A + +G L +++ L + P L + + Sbjct: 180 GLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTL-PLRVDQRQLLNEAFY 238 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 +T + +GT + + + ++ I+ N + + + K Sbjct: 239 EAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNEAKAK 290 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228 E+K + + Sbjct: 291 AEEAVEVKSMFLANMSHEIRTPMNA 315 >gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580] gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis ATCC 14580] gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580] Length = 593 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E L +IL + +DG+ IN +G IL TN + + V Sbjct: 245 ALNQEKEHLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNVKEGHEL 301 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G T + L + + D++E + Sbjct: 302 PPEARELFQNTVSTEKEQMIEMTLQGRT----WVLLMSPLYNQSHVRGAVAVLRDMTEER 357 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 358 RL--------------DKLRKDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEEKKE 401 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G ++L+ EPV L E A +K I Sbjct: 402 IAQVIYDESLRMGRLVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNIT 461 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + + + D ++Q+ N++ NAI T +GG + + + + + V+D+G Sbjct: 462 LSHNLDLHEAKFVFDPDKMEQVLTNLIDNAIRHTNAGGTVHVDVQSAESG-LKIAVKDSG 520 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +VDA+ G + S +GT Sbjct: 521 SGIPEEDLPFIFERFYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFT 580 Query: 806 IIFP 809 P Sbjct: 581 FYIP 584 >gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1] Length = 587 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 26/365 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ +NR G +L TN + + ++ + L Sbjct: 248 ALNQEKEQLASILSSMADGVITLNRNGEVLITNPPADRFLQAWYYEQGQRDDLLPLPPQ- 306 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 +N + ++ + Q +E G + + + + D++E + Sbjct: 307 ---VNELFKKAVTEEKEQAIEMALQGRN----WVIVMTPLYNGKVIRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + + E Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDI--AATDEEKKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + LH E V L V I Q A EK + Sbjct: 404 LAKVIYDESLRMGRLVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVH 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + + D V+Q+ N++ NA+ T GG++ + E V + V+D+G Sbjct: 464 LLVEMNDELI-VSFDPDRVEQVLTNLIDNALRHTDEGGEVRVIVD-ADEEVVRISVQDSG 521 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 522 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFT 581 Query: 806 IIFPL 810 PL Sbjct: 582 FTLPL 586 >gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM 2380] gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter carbinolicus DSM 2380] Length = 613 Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats. Identities = 96/570 (16%), Positives = 204/570 (35%), Gaps = 38/570 (6%) Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + +D ++ + + + + Y + + + + Sbjct: 77 HIHPEDRTHAFKEMHRTLRSGQPTQLEYRVQHRDGHYVWVQDYSYVCCRGANDVCHIVGY 136 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 + S + +L +D F G L Y N SF+ + + Sbjct: 137 LQNISDTKKHLNDLDLARRAIDSSINAIAFTDLEGCLSYVNRSFVRMMGIDKPETAIGRQ 196 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + TL PK + A + Sbjct: 197 -VGTLWKNPKKARVVLRNLQKFGEWSGEVAALR--------PDGLLAYFEVSAHVVEDSG 247 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSK 483 + + + +++++ + + + SD I I + I+ N A Sbjct: 248 GHPHCYMASFVDVTEQKKAEQEVQESEEKYRLLFSSCSDAIVIFDAGSLRIVDVNGAALD 307 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 L+GY ++ L E+ S + + +I+S LR + K+ + + + Sbjct: 308 LYGYTRDEFLALDVLDLSEEPEQSRLR--MQQIISGTLRHFP--LVSHRRKDGTRVDVEV 363 Query: 544 IIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + ++ D+SE ++ + K D L+ VSHE+RTPLT Sbjct: 364 SVGSFSWQKRQVFAGFFRDVSERQRIEE--------------LKDDMLSSVSHEMRTPLT 409 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GF++ + P R +Y + I + + ++V + L++ ++ +G P Sbjct: 410 AIMGFTDYLLKSNDRP---ERQKDYLSIIQQQSERLKELVENHLNLQRLRAGHGVGAIHP 466 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V + + ++ R IR ++P + D + + N+LSNAI ++ Sbjct: 467 VEVLPLLHGVSNMFSS--ARGRDRIRIQCPEDLPPVRGDENQLYRALYNLLSNAIKYSSE 524 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +I++ + V+ V+D GVG+ N F ++ + G+GLGL L Sbjct: 525 DQEILLGARRADDAAVLF-VKDQGVGIPNEHQATIFDRFFRV-PAGDHGMRGSGLGLSLV 582 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + ++ A+ G+ ++ S P +G+ + PL+ Sbjct: 583 QEIIKAHNGRIWLDSVPGQGSCFYLKLPLF 612 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 27/316 (8%), Positives = 83/316 (26%), Gaps = 22/316 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G L ++ + +G + IG ++ + + + L++ W G+ Sbjct: 167 TDLEGCLSYVNRSFVRMMGIDKPETAIGRQVGTLW--KNPKKARVVLRNLQKFGEWSGEV 224 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G L +++A + + + + ++K+ L Sbjct: 225 AALRPDG--LLAYFEVSAHVVEDSGGHPHCYMASFV--DVTEQKKAEQEVQESEEKYRLL 280 Query: 208 HEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + +++ +L ++ + + S Sbjct: 281 FSSCSDAIVIFDAGSLRIVDVNGAALDLYGYTRDEFLALDVLDLSEEPEQSRLRMQQIIS 340 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + G+ Q + + + D+ + Sbjct: 341 GTLRHFPLVSHRRKDGTRVDVEVSVGSFSWQKRQVFAGFFRDVSERQRIEELKDDMLSSV 400 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---------DDIEIAGGLSTLLDAP 373 + + L +N Y S+ + +E L L Sbjct: 401 SHEMRTPLTAIMGF-TDYLLKSNDRPERQKDYLSIIQQQSERLKELVENHLNLQRLRAGH 459 Query: 374 KLSDNNAIKPVMLYRS 389 + + ++ + L Sbjct: 460 GVGAIHPVEVLPLLHG 475 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 8/138 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMN 510 + ++ EA + +N G L + ++FG E++ + + V + + Sbjct: 28 KYQALAEAFGGVVYELNHPGGRLDWSDQCWRMFGITREEMGSDIQSWLVHIHPEDRTHAF 87 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQ 566 + L L ++ + + + + + +IS+ K+ Sbjct: 88 KEMHRTLRSGQPTQL--EYRVQHRDGHYVWVQDYSYVCCRGANDVCHIVGYLQNISDTKK 145 Query: 567 EKNKLSHAKKIAEKESSH 584 N L A++ + + Sbjct: 146 HLNDLDLARRAIDSSINA 163 >gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1620 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 232/638 (36%), Gaps = 37/638 (5%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----------R 235 + + + LD+ + + ++ D+ R Sbjct: 344 IKASEEAAQNERFLDQLINSIAAGILIVDPADRTIVDVNDFALKLAGRDRNEVVGKVCHR 403 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQN 294 + V K LLT E +P H + + + F + + Sbjct: 404 LTCPVEKDNCPILDLAQPRNMSKRTLLTKEGREIPILKTVSHIVRDGRELLLETFVDITD 463 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353 + E + L E +D + S G + +P+ + Sbjct: 464 EERSREEL--EKTKKELEDKVTERTAHLRGIIDTANNGIIVIDSKGRITEFSPAASEIFG 521 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 Y + + +S L+ P S + L I L + + Sbjct: 522 YSREEIMGR--DISLLMPEPHKSKHAQYIRNYLNGGAPKVIGRQIVLDAQKKDGS---IF 576 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 ++M + + + + ++E E +L ILE + G ++ + Sbjct: 577 PMEIALNTAVVNDDMIFVAVLRDVTVRKRMEEELENEQHRLQKILETSPVG-VVVTVNDV 635 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 N++++ + G V R+ P L + + E Sbjct: 636 ARFANKSMAAM-GLSVGTQARR------AYADPVDRERMLALLAENGRVEHFETKFRARD 688 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 E + L + DI+E K + L+ AK+ AE+ + KSDFLA +S Sbjct: 689 GEILDVILFCYDFDYHGERAILGWVIDITERKAAEEALAKAKEQAEEATKAKSDFLANMS 748 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTP+ AI+G S + + +Y + RS +L I+ND+LD SKIE+G Sbjct: 749 HEIRTPMNAIMGLSHLALQTEL----TDKQRKYIEKVYRSAENLLGILNDILDFSKIEAG 804 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K+++ L++ S+V L A E + + N+P ++ D + QI +N+ + Sbjct: 805 KLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPTLVGDPLRLGQILINLGN 864 Query: 714 NAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 NA+ FTP G ++++S ++ V+DTG+G++ + +K + F Q S Sbjct: 865 NAVKFTPRG-EVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQRKKLFQHFSQADASTTR 923 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + G GLGL + K + + G ++ S P G++ Sbjct: 924 KYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHFT 961 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 51/436 (11%), Positives = 112/436 (25%), Gaps = 44/436 (10%) Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 + L+AL I+ + RG+ + D R ++ + + G + Sbjct: 97 LSLSALAIWDEHGRIIFERGYDV--DGNEDQAMVERLVRKMEQAAPPPNPQDGIKGLALL 154 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYY-AHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + + P L+ + A E+ L E Sbjct: 155 DNGLLALVVKRPVLKSDASGPPIGAMLMAKLVTPRMLEELSESLGFSVHLESIEKKPAAF 214 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + + ++ + L ++ + Sbjct: 215 SGKLKGGFFIERPNKDAISATSSLEGVRREPVAVLTVVTNRDIGK------------RGE 262 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + + + + L +S A+ + Sbjct: 263 RITDV------YYAVIGLTILATCWLIYFLFYKKVVSRIEALSGQVSRLG------GKGD 310 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L + N IE + L ++ Sbjct: 311 LRRVHVEG--------NDEIHDLGAGINEMLASIEQARDGLIKASEEAAQNERFLDQLIN 362 Query: 460 ATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + GI I++ I+ N KL G +++ K IL Sbjct: 363 SIAAGILIVDPADRTIVDVNDFALKLAGRDRNEVVGKVCHRLTCPVEKDNCP-----ILD 417 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKK 576 L + + K TL TKE + + + + + L T DI++ ++ + +L KK Sbjct: 418 LAQPRNMSKRTLL-TKEGREIPILKTVSHIVRDGRELLLETFVDITDEERSREELEKTKK 476 Query: 577 IAEKESSHKSDFLARV 592 E + + ++ L + Sbjct: 477 ELEDKVTERTAHLRGI 492 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 22/200 (11%), Positives = 49/200 (24%), Gaps = 15/200 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT-WYGK 146 ID+ G + E S + G +++G + + H + I + L G+ Sbjct: 503 IDSKGRITEFSPAASEIFGYSREEIMGRDISLLMPEPHKSKHAQYIRNYLNGGAPKVIGR 562 Query: 147 TTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ + I L + ++ V + + Sbjct: 563 QIVLDAQKKDGSIFPMEIALNTAVVNDD------MIFVAVLRDVTVRKRMEEELENEQHR 616 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + E V F+ +S + + LL Sbjct: 617 LQKILETSPVGVVVTVNDVARFANKSMAAMGLSVGTQARRAYADPVDRER----MLALLA 672 Query: 264 SEESSLPEQEDFHTINLNQY 283 + F + Sbjct: 673 ENGRVEHFETKFRARDGEIL 692 Score = 47.3 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 41/371 (11%), Positives = 102/371 (27%), Gaps = 26/371 (7%) Query: 89 IDAHGY-LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D + ++++ K G +++G ++ + D N I DL + +N K Sbjct: 371 VDPADRTIVDVNDFALKLAGRDRNEVVGKVCHRLTCPVEKD-NCPILDLAQPRNM--SKR 427 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 TL EG + + ++ + + RE I R + K L+ K + Sbjct: 428 TLLTKEGREIPILKTVSHI-VRDG-RELLLETFVDITDEERSREELEKTKKELEDKVTER 485 Query: 208 HEIKKGHSSVE-------KEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKD--D 252 +G K I + + + SL HK Sbjct: 486 TAHLRGIIDTANNGIIVIDSKGRITEFSPAASEIFGYSREEIMGRDISLLMPEPHKSKHA 545 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF--GTLQNNSKESFEYLSHRNHPS 310 + D + + + + + ++ Sbjct: 546 QYIRNYLNGGAPKVIGRQIVLDAQKKDGSIFPMEIALNTAVVNDDMIFVAVLRDVTVRKR 605 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL---TKYKSVDDIEIAGGLS 367 + + ++ + ++ P+ V + +AN S + ++ Sbjct: 606 MEEELENEQHRLQKILETSPVGVVVTVNDVARFANKSMAAMGLSVGTQARRAYADPVDRE 665 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 +L + D + + ++ E ++ I + E Sbjct: 666 RMLALLAENGRVEHFETKFRARDGEILDVILFCYDFDYHGERAILGWVIDITERKAAEEA 725 Query: 428 MPQNGIEPEDV 438 + + + E+ Sbjct: 726 LAKAKEQAEEA 736 >gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1] gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1] Length = 576 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 174/396 (43%), Gaps = 26/396 (6%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGII 474 + + + + K + +L +++E G+ +I+ G Sbjct: 195 RARTYEDRMDETSMLSTSINILARNLQEMKSAQDIQQNRLTTLIENMGSGLLLIDHRGYA 254 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + TN+A + F E I K + ++ +N + EI + ++ +++ L T Sbjct: 255 VLTNKAFKEFFSITAERITNKRYYEVIK---FPEVNKLVEEIFMTE-QKIRKQLLLPLTI 310 Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 E K L L HDI+E K+ + + DF+A V Sbjct: 311 ERKHFELYGAPIIGTKEEWKGIVLVFHDITELKKLE--------------QMRKDFVANV 356 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTP+T+I GFSE + + + N I R + + ++ DLLD+SK+E Sbjct: 357 SHELRTPITSIKGFSETLLDGAMN--DKETLEMFLNIILRESDRLQSLITDLLDLSKMEK 414 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 L+ + E + E I++++ +K I + + D +KQ+ +N++ Sbjct: 415 QGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLA-EVDSFRIKQVFINLI 473 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI +TP+GG++ +S + + +++ VRD G+G+ E + + F ++ ++ Sbjct: 474 GNAITYTPAGGEVSVSLKQSDS-VIVIEVRDNGIGIEESEFPRIFERFYRVDKARSRDSG 532 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +++A+ G + S +GT + Sbjct: 533 GTGLGLAIVKHLIEAHGGTIGVESKVNEGTTFTVTL 568 >gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 634 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 174/408 (42%), Gaps = 16/408 (3%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + Q E + + R + + + DG+ + Sbjct: 95 DRAKGLNGGADAYLVQPVEAIELIATVKALLRIREAEEAALTSAREWQITFDTIRDGVGL 154 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++ +G + N+A++KL PV +++ L R+++E Sbjct: 155 LDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDILHLILNESYMTPFIRAKETLQRESIEI 214 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + III + + DI+E KQ + + + +++ + Sbjct: 215 ESKNK-------WYNIIIDPILNQHRVLTGAVFIIVDITERKQIEKEREILYEESQRANR 267 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K +FLA +SHE+R+PL I+G++ ++K +F I+R+ NL ++ D Sbjct: 268 IKDEFLAILSHELRSPLNPILGWASLLKTSKFNA---DTIKHGLEIIERNANLQTRLIED 324 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+S+I GK+ L+ PV L ++ A+ +VQL A K I I T N+ + AD Sbjct: 325 LLDVSRILRGKLILNTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQADPSR 384 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ N+LSNAI FTPSGG++ I + + DTG G++ L F Q Sbjct: 385 LQQVIWNLLSNAIKFTPSGGKVTIYLERIDK-YAQITISDTGKGISKEFLPYVFDYFRQA 443 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 ++ + G GLGL + +V+ + G S +G + P+ Sbjct: 444 DSTTTRKFGGLGLGLAIVHHLVELHGGTVQAQSAGEGQGASFIVRLPV 491 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 41/467 (8%), Positives = 125/467 (26%), Gaps = 40/467 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G ++ + K + ++IG D+ ++ + + ++ + T ++ Sbjct: 155 LDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDILHLILNESY--MTPFIRAKETLQRESI 212 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + ID PI +++R +G I+ + L ++ + Sbjct: 213 EIESKNKWYNIIID----PILNQHRVLTGA--VFIIVDITERKQIEKEREILYEESQRAN 266 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 IK ++ + + + H ++++ E Sbjct: 267 RIKDEFLAILSHELRS-PLNPILGWASLLKTSKFNADTIKHGLEIIERNANLQTRLIEDL 325 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L L T ++ ++ E + + + D + Sbjct: 326 LDVSRILRG-KLILNTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQADPSR 384 Query: 329 CPIPFFVYSHGNLFY------ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + + + KY + + G+S Sbjct: 385 LQQVIWNLLSNAIKFTPSGGKVTIYLERIDKYAQITISDTGKGISKEFLPYVFDYFRQAD 444 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + + H ++ + A + + A+ + +I Sbjct: 445 STTTRKFGGLGLGLAIVHHLVELHGGTVQAQSAGEGQGASFIVRLPVIAPQSTTYKENKI 504 Query: 443 NKRKMEIE---------VMQLCSILEAT-----SDGIAIINREGIILSTNRAVSKLFGYP 488 + + + ++ + L +D IA+ + N+A+ L Sbjct: 505 STQTLSLQGLKVLVVDDEADMRDFLRFALQQYGADVIAVAD-------ANQALLALIDKH 557 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + +L + + + + ++ Q + Sbjct: 558 PDILLS---DIGMPGMDGYMFIRQVRKLEPTQGGQIPAIALTAYAGD 601 >gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas testosteroni KF-1] Length = 837 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 104/531 (19%), Positives = 205/531 (38%), Gaps = 24/531 (4%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKS 356 + ++ + A E + F L + N + +LT S Sbjct: 323 RKLQRVARQAMDRSQARLARSEQELAVLMRSVQELIFRTDKDGLLTFVNARWEMLTGQSS 382 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + L K+ + V + + + + Sbjct: 383 KMALG--------LRFEKIVEPQCRNQVKVLLDANSQQSLRTCQAFFSLPNGKEILCEIA 434 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + + G + + ++ ++ + E T + I + + I Sbjct: 435 VVPLIKK-GQIVGFAGSAVDVTARWKAQHDLQTQLAFQHLLFETTPLPLLITDEKNSITL 493 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 NRA + G I+ K + S+ ++L + ++ + Sbjct: 494 VNRAWEEFSGVSALQIMGKYLKDVCSCDNASMQLMINQKVLDSGQKAVIDAKII--HANG 551 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++I + S D+++++ + A+ AE+ KS+F+A + Sbjct: 552 YYRDMQITKAAIKDSRGKATGVLSIFVDVTDFRAAEQATREARDAAEEAFRVKSEFVANM 611 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL +IIGF+E+ +P++ E N I +G +L +VNDLLD++K+ES Sbjct: 612 SHELRTPLQSIIGFAEL---GHLRSRKSPQFSEMFNDIHSAGQRMLALVNDLLDVAKLES 668 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 +H E + L + ++ ++K+I +R N AD +Q+ N+L Sbjct: 669 AVGVIHLERIDLRGLIRPIARELEPLQHQKQIDLRLDLENFPMIAKADPVRFQQVVRNML 728 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 +NAI F+P+ G++ + + + + D G G+ EL++ +PF Q + + Sbjct: 729 ANAIKFSPNHGRVDVIGRFDDHGNICIDFSDQGPGIPPQELDQIFQPFVQ-SSKTKDGSG 787 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPHDCI 820 GTGLGL + + ++DA G + P G + I P +Y+T P + I Sbjct: 788 GTGLGLAICRKIIDAMDGTISAKNKPDGGAIFRITLPSRSVYET-QPGELI 837 Score = 40.4 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 18/250 (7%), Positives = 61/250 (24%), Gaps = 15/250 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-----LKR 139 + D G L ++ G + +G+R + + + + D L+ Sbjct: 357 LIFRTDKDGLLTFVNARWEMLTGQSSKMALGLRFEKIVEPQCRNQVKVLLDANSQQSLRT 416 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGK 198 ++ + ++A +P+ + + GF G + R Sbjct: 417 CQAFFSLP-------NGKEILCEIAVVPL-IKKGQIVGFAGSAVDVTARWKAQHDLQTQL 468 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + + + + + + D+ Sbjct: 469 AFQHLLFETTPLPLLITDEKNSITLVNRAWEEFSGVSALQIMGKYLKDVCSCDNASMQLM 528 Query: 259 YPLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + N + ++++ ++ LS + ++ Sbjct: 529 INQKVLDSGQKAVIDAKIIHANGYYRDMQITKAAIKDSRGKATGVLSIFVDVTDFRAAEQ 588 Query: 318 GENLTPETVD 327 + + Sbjct: 589 ATREARDAAE 598 >gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3] Length = 1169 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 111/509 (21%), Positives = 201/509 (39%), Gaps = 23/509 (4%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + ++ F + G + N + L +Y+ + I + Sbjct: 224 EKNRSDLESANTRLSTILETAVDGFIIVDTSGVITQVNSAVCRLFEYELDELIGENVSIF 283 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + D + + R R +A + Sbjct: 284 MPTHERHMHDGFMSRFIQSARDARKGRELTA-------QNRSGEQFPIELSISRMTIENE 336 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G+ + D + + L + LEA+ D + I+ G I N A KLFG+ Sbjct: 337 TMLLGLVKDLSDIKRKEVAALRTETILLATLEASQDALITIDITGRIQEFNDAACKLFGH 396 Query: 488 PVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI- 543 E L + + ++K + ++ + + Sbjct: 397 KREQALGELLEDLIFVDIEKKNFKQGIQLFRQTGEGPAIKKSIEMMSVKRDGSSFPVEMK 456 Query: 544 -IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 I +L + +HDIS+ + + +L AK AE S KS FLA +SHEIR+PL A Sbjct: 457 MIPVQLGEEILLTAFVHDISKRIEYETQLKQAKDQAESGSKAKSRFLATMSHEIRSPLNA 516 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G E++ + + N YA+ +G +L +ND+LD SKIE+G+M L Sbjct: 517 VLGSVELMLDSKL----NKEQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMMLESVSF 572 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 S + V++ + ++ A+EK I + N+P + D + ++Q+ N++ NAI F+ S Sbjct: 573 SPAKIVAQVLRILAPNAHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKFS-S 631 Query: 722 GGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 GG + + +EEV L V D G+G++ +K K F Q+ + +G+GLG Sbjct: 632 GGCVSVEMWIPDSHHEEVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSGLG 691 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 L + +++ GK + S G+ Sbjct: 692 LAICAELIEMMGGKIELSSRLGHGSCFRF 720 Score = 38.9 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 14/145 (9%), Positives = 36/145 (24%), Gaps = 7/145 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146 +D G + +++ + + ++IG + ++ ++ G+ Sbjct: 251 VDTSGVITQVNSAVCRLFEYELDELIGENVSIFMPTHERHMHDGFMSRFIQSARDARKGR 310 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + PI+L+ + N G+V R + Sbjct: 311 ELTAQNR-SGEQFPIELSISRMTIENETML----LGLVKDLSDIKRKEVAALRTETILLA 365 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP 231 E + I Sbjct: 366 TLEASQDALITIDITGRIQEFNDAA 390 >gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 1296 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 103/611 (16%), Positives = 213/611 (34%), Gaps = 29/611 (4%) Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 + RM + V + L + + + Sbjct: 688 EALAAVERRMPDLVLTDVMMPRLDGFGLLAALRTDERTRALPVIVLSARAGEEATLAGLE 747 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFFVYSHGNLFYAN 345 + + + E L + E L + ++ + V G + Sbjct: 748 RGADDYLSKPFAARELLGRVKANLELSRLRGETARLLHASEERARLAIRVGRLGTWRFVP 807 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTL-----LDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 S + + + L ++ +D + + D Sbjct: 808 TSGVATMDERMREIWGEPEDTFQLSLAQAMERIHPADRERVSQAVDAALDPASAGTLEID 867 Query: 401 HTIQWNRENSLAMTFIPFE----KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + I W + ++ + G + + + ++ + + Sbjct: 868 YRIVWPNGSERWVSANGQVFFEQTEAGSRRAVDFIGTALDITERKRIEQALAGSEQRYRL 927 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E+ + + G +L N S+ G+ +E + + + + + T Sbjct: 928 LAESIPQLVWTADVGGTLLDVNGRWSQYTGFTLEQVKKSGWESVVHPEDVPGLRRQWTAA 987 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + + L + T DI E KQ + + Sbjct: 988 IK--AVAAYRAEGRMRRTDGTYRWHLHQAMPLMDGEGRILKWFGTATDIEERKQLEAERE 1045 Query: 573 H-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 A++ AE + K +FLA + HE+RTPL IIG++++++ + GP ++ + Sbjct: 1046 QLLERAEQAREAAEAANRTKDEFLAILGHELRTPLNPIIGWTQMLRRGKVGP---DKHDQ 1102 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+R+ L +++DLLD+S+I G + + +P++L V A+ V+ A +K++ Sbjct: 1103 ALEIIERNARLQTQLIDDLLDVSRIMRGSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQ 1162 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + P + AD ++Q+ N+L+NA+ FTP+GGQ+ + + L + DTG Sbjct: 1163 LFEQLRTTAP-LSADPTRLQQVVWNLLTNAVKFTPAGGQVQVRLE-SGGGMARLTISDTG 1220 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLI 804 VG+ L + F Q +G GLGL + + +V+A+ G S KG Sbjct: 1221 VGIPAEFLPHLFERFRQADTKSTREQKGLGLGLFIVRHIVEAHGGTVQAESEGEGKGAAF 1280 Query: 805 EIIFPLYDTSH 815 ++ PL + Sbjct: 1281 TVVLPLGGEAQ 1291 Score = 246 bits (629), Expect = 8e-63, Method: Composition-based stats. Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 5/255 (1%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + K+ F + VSHE RTPL+ ++G E + E Sbjct: 354 RAYEAECRRAEALAEIDRAKTVFFSNVSHEFRTPLSLLLGPLEDVLAGDGISAPT---RE 410 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 R+G +L +VN LLD S+IE+G++ +F P L ++ +S+ + + + Sbjct: 411 QLTLAQRNGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKAGLR 470 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + D ++I LN+LSNA FT G QI + + EV L + DTG Sbjct: 471 LVIDCPPLAEAVYVDRDMWEKIVLNLLSNAFKFTLRG-QIAVRLRQQT-GEVCLELEDTG 528 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 VG+ +EL + F ++ EG+G+GL L +V+ + GK + S +G+ Sbjct: 529 VGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGSTFT 588 Query: 806 IIFPLYDTSHPHDCI 820 + P P D I Sbjct: 589 VRLPTGTAHLPADRI 603 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 30/358 (8%), Positives = 73/358 (20%), Gaps = 20/358 (5%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 SE + + W D G L +++ + G ++ V + Sbjct: 919 AGSEQRYRLLAESIP-QLVWTADVGGTLLDVNGRWSQYTGFTLEQVKKSGWESVVHPEDV 977 Query: 128 DPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 +K + + + +GT + A+P+ + FG Sbjct: 978 PGLRRQWTAAIKAVAAYRAEGRMRRTDGTYRWHLHQ--AMPLMDGEGRI--LKWFGTATD 1033 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSL 243 A ++L ++ E + + + E I + P + Sbjct: 1034 IEERKQLEAEREQLLERAEQAREAAEAANRTKDEFLAILGHELRTPLNPIIGWTQMLRRG 1093 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 D L+ + + + + + Q Sbjct: 1094 KVGPDKHDQALEIIERNARLQTQLIDDLLDVSRIMRGSLRIAPQPITLAAIVVCALEAVR 1153 Query: 304 SHRNHP--------SLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKY 354 +A + V + G Sbjct: 1154 GLAEQKQVQLFEQLRTTAPLSADPTRLQQVVWNLLTNAVKFTPAGGQVQV--RLESGGGM 1211 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + G+ + H ++ + A Sbjct: 1212 ARLTISDTGVGIPAEFLPHLFERFRQADTKSTREQKGLGLGLFIVRHIVEAHGGTVQA 1269 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 57/495 (11%), Positives = 121/495 (24%), Gaps = 44/495 (8%) Query: 99 SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTN 156 ++ T+G +G V + D I +LK Y + L G Sbjct: 91 NDAYRPTLGIKHPWALGHPAQQVWKEIWRDIAPRIETVLKTGEATYDEALLLFLERSGFP 150 Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 + P+ E +G +V L + S L + Sbjct: 151 EETYHTFSYSPLADEAGEVAGM--LCVVTEETERVIGERRMALLRELASDLAATQTQEEV 208 Query: 217 VEKEKYDIFSQQSPPPHLRM----KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + + P M + A + P++ P Sbjct: 209 FAAVQRQVGKYSKDLPFTLMYLFDSDAGGRARLAAATGIEAKHPGARPIIDPATYGGPWS 268 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-- 330 + G L N + E V Sbjct: 269 AHKLWEGAPPILLNDFEGQLGGNPPSGGWDKPPHQVSVVPIKSQGQERPAGFLVAALNPY 328 Query: 331 -------IPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 F G + AN + + + + T+ + + Sbjct: 329 RRYDAEYAGFVDLLTGQIAAGLANARAYE-AECRRAEALAEIDRAKTVFFSNVSHEFRTP 387 Query: 382 KPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++L D +L Q N L + + + + N + Sbjct: 388 LSLLLGPLEDVLAGDGISAPTREQLTLAQRNGRRLLKLVNTLLDFSRIEAGRIQANFLPT 447 Query: 436 E---DVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + ++ + +E L +++ ++ + + +R+ + V L + Sbjct: 448 DLASLTAQLVSVFRSAVEKAGLRLVIDCPPLAEAVYV-DRD----MWEKIVLNLLSNAFK 502 Query: 491 DILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTLEK-----ITLGSTKEEKLLSLR 542 LR V L Q T V I + +L + ++ G + E + L Sbjct: 503 FTLRGQIAVRLRQQTGEVCLELEDTGVGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLA 562 Query: 543 IIIKKLPFSSCYSLT 557 ++ + + Sbjct: 563 LVAELVEIHGGKVSV 577 >gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 456 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 84/370 (22%), Positives = 169/370 (45%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ ++ +L +IL++ +G+ + IL N A K+ + ++ K Sbjct: 101 KVTIEELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAAKKILNIKGKYLIGKHILEI 160 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S + ++ + K K+ + I+ + + + L + Sbjct: 161 VR---NSKLYDLFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +++F+A VSHE+RTPLT+I GF E + R G + Sbjct: 217 DITEMRRLE--------------KIRNEFVANVSHELRTPLTSIRGFIETL---RNGAIE 259 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP + + + ID + ++ND+L +S+IE+ K E LD + + + ++ Sbjct: 260 NPEARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKM 319 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I + I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 320 ARNKNITLIKDLNCPGLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+D G+G++ + + + F ++ S+ + GTGLGL + K +V++ G+ + S Sbjct: 379 IEVKDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEV 438 Query: 799 AKGTLIEIIF 808 KGT + F Sbjct: 439 GKGTKFIMKF 448 >gi|298489822|ref|YP_003719999.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae' 0708] gi|298231740|gb|ADI62876.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae' 0708] Length = 884 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 96/647 (14%), Positives = 232/647 (35%), Gaps = 32/647 (4%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSS 242 + AL S + + +++ + +V Sbjct: 251 AEIVERQRTEAALRHTNQTLQSLIAASPRAIFTLDLHNNVKMWNPAAERMFGWSETEVLD 310 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + + + + + + + L N+ Sbjct: 311 QPNPIMSAELEEYEKIKETVIQGITPPSVEVRQRKKDNSLIDIVFSAAPLHNSEGVISGM 370 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-------NLFYANPSFLLLTKYK 355 ++ + E V + + Y N +F +T Y Sbjct: 371 VAVVADITEQKRQAEQVRFLESVVVNTNDAVLITEAEPIDEPVPRILYINEAFTRMTGYS 430 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + G+ L PK + + + + + + + + + + Sbjct: 431 PEEVLGKTPGI---LQGPKTTGAVLDQ---VRTALFSRESVTVEAINYRKDGSE-FWVES 483 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 A++ I+ + + + ++ + + S++E D I I++ +G I Sbjct: 484 SIVPVADKTGYYTHWISIQRDVSERKRIEQALRCSEERFRSLIENALDVITILDTDGTIH 543 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + +V K+ GY +++ + F ++ + + +T + L ++ Sbjct: 544 YMSPSVEKVLGYRSVELINQNFFAWIHPDDFVATCYNITNAIKN-PDVPLPVEFRYRHQD 602 Query: 536 EKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + +L I +K +S + + DI+E K+ + ++ ++ S+ K F + Sbjct: 603 DSWRTLEAISQKFVDNSELTSIVVNSRDITERKRLEEVRLALERE-KELSAMKIRFFSMA 661 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE RTPL+ + +++++N + I S ++ +++D+L I++ E+ Sbjct: 662 SHEFRTPLSTALAAAQLLENSPHAWENGGKRSRNLRRIQDSVKNMVQLLDDILTINRAET 721 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--------RILADLRSV 704 G + + + + L+ + + ++L + I + + + + D + + Sbjct: 722 GNLEFNPQWLDLERFCRQFVEEIRLSNTSEYI-LTFTCDSVPWRNTVEQWQQAYLDEKLL 780 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 + I N+LSNAI ++P Q+ + +VI+++ D G+G++ + ++ +PF + Sbjct: 781 RSILGNLLSNAIKYSPEKTQVDFCLNF-DHNQVIIQISDHGIGISTTDQDQLFEPFHRGH 839 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 N GTGLGL + K VD + G I S GT + + PL Sbjct: 840 N--VRNIAGTGLGLVVVKKCVDLHGGHLNIVSELGHGTTVTVTLPLA 884 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 9/244 (3%) Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQ 404 + + + + + + L LL A + S+ + + A A + Sbjct: 161 QEVRKVRETDNSESLHPSPHLWGLLIAHQCSNVRQWQTWEVELMKQLATQVAIAIQQSEL 220 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + L + + E V+ + + + L S++ A+ Sbjct: 221 YEQLQQLNAQLEHRVQQRTEELARTNTSLRAEIVERQRTEAALRHTNQTLQSLIAASPRA 280 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I ++ + N A ++FG+ ++L +P + ++ + Sbjct: 281 IFTLDLHNNVKMWNPAAERMFGWSETEVLDQP--NPIMSAELEEYEKIKETVIQGITPPS 338 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580 + K+ L+ + L S + DI+E K++ ++ + + Sbjct: 339 V--EVRQRKKDNSLIDIVFSAAPLHNSEGVISGMVAVVADITEQKRQAEQVRFLESVVVN 396 Query: 581 ESSH 584 + Sbjct: 397 TNDA 400 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 47/476 (9%), Positives = 132/476 (27%), Gaps = 62/476 (13%) Query: 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNT 142 R + +D H +K + + G +++ ++ I + +++ Sbjct: 279 RAIFTLDLHNNVKMWNPAAERMFGWSETEVLDQPNP--IMSAELEEYEKIKETVIQGITP 336 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + + + I +A P+++ SG +V + L+ Sbjct: 337 PSVEVRQRKKDNSL--IDIVFSAAPLHNSEGVISGM--VAVVADITEQKRQAEQVRFLES 392 Query: 203 KFSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEK 258 + ++ + +++ I + +V T Sbjct: 393 VVVNTNDAVLITEAEPIDEPVPRILYINEAFTRMTGYSPEEVLGKTPGILQGPKTTGAVL 452 Query: 259 YPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + T+ S+ + + + +++ + + + + ++S + S + Sbjct: 453 DQVRTALFSRESVTVEAINYRKDGSEFWVESSIVPVADKTGYYTHWISIQRDVSERKRIE 512 Query: 317 EGEN----LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS---- 367 + ++ + G + Y +PS + Y+SV+ I Sbjct: 513 QALRCSEERFRSLIENALDVITILDTDGTIHYMSPSVEKVLGYRSVELINQNFFAWIHPD 572 Query: 368 -------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFE 419 + +A K D D + A N E S+ + Sbjct: 573 DFVATCYNITNAIKNPDVPLPVEFRYRHQDDSWRTLEAISQKFVDNSELTSIVVNSRDIT 632 Query: 420 KANQFPENMPQNGIEPEDVDTR------------------INKRKMEI-----------E 450 + + E E E + + ++ Sbjct: 633 ERKRLEEVRLALEREKELSAMKIRFFSMASHEFRTPLSTALAAAQLLENSPHAWENGGKR 692 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 L I ++ + + +++ IL+ NRA + + + + + F + Sbjct: 693 SRNLRRIQDSVKNMVQLLDD---ILTINRAETGNLEFNPQWLDLERFCRQFVEEIR 745 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 43/396 (10%), Positives = 113/396 (28%), Gaps = 26/396 (6%) Query: 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGD 135 +PI V + I+E + G +++G + + + Sbjct: 407 EPIDEPVP---------RILYINEAFTRMTGYSPEEVLGKTPGILQGPKTTGAVLDQVRT 457 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 L + + + + +G+ ++ + +P+ + ++ + I Sbjct: 458 ALFSRESVTVEAINYRKDGS--EFWVESSIVPVADKTGYYTHW--ISIQRDVSERKRIEQ 513 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDD 252 + +++F L E ++ I R ++ + H DD Sbjct: 514 ALRCSEERFRSLIENALDVITILDTDGTIHYMSPSVEKVLGYRSVELINQNFFAWIHPDD 573 Query: 253 VLKT--EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + T + + + LP + + + + T + +NS E + + + Sbjct: 574 FVATCYNITNAIKNPDVPLPVEFRYRHQDDSWRTLEAISQKFVDNS-ELTSIVVNSRDIT 632 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP-----SFLLLTKYKSVDDIEIAGG 365 +E + + +S + + P + L + E G Sbjct: 633 ERKRLEEVRLALEREKELSAMKIRFFSMASHEFRTPLSTALAAAQLLENSPHAW-ENGGK 691 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 S L + S N ++ + + + + + E +N Sbjct: 692 RSRNLRRIQDSVKNMVQLLDDILTINRAETGNLEFNPQWLDLERFCRQFVEEIRLSNTSE 751 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + +T ++ ++ L SIL Sbjct: 752 YILTFTCDSVPWRNTVEQWQQAYLDEKLLRSILGNL 787 >gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 929 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 16/388 (4%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRK 495 + + E L ++LE D I + E + +++ L +I+ K Sbjct: 124 IAQRDQIQDALLNEKFLLQTLLEHLPDAIYFKDAESRFTRVSGSMATLLKVKDASEIVGK 183 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 F + + +L + K + + + + L Sbjct: 184 SDADFFPKEFAAEAYSDEQWLLETG-SMMIGKEEMPIWADGRQTWVSTTKGVLRDVEGNV 242 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 HDI+ K + +L AK+ AE + KSDFLA +SHEIRTP+ AIIG SE++ Sbjct: 243 IGTFGISHDITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLL 302 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + Y + S +L I+N++LD SKIE+G + L +E + L + V E Sbjct: 303 DSEL----QHQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVET 358 Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + + A+ K + + +IP++ + D ++QI +N++ NAI FT +G +I++ Sbjct: 359 LRSLAARAHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEAG-EIVVQVK 417 Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T + E+ VRDTG+G+ L+K F Q S + GTGLGL +A + Sbjct: 418 SLEMSTDSVELHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLAS 477 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 A G + S +G++ L +S Sbjct: 478 AMGGMIWAESMLGQGSVFHFKIQLTSSS 505 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 60/482 (12%), Positives = 122/482 (25%), Gaps = 54/482 (11%) Query: 90 DAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147 DA +S + + A +++G D + + LL+ + GK Sbjct: 156 DAESRFTRVSGSMATLLKVKDASEIVGKSDADFFPKEFAAEAYSDEQWLLETGSMMIGKE 215 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 PI + + G FGI H + K + Sbjct: 216 -EMPIWADGRQTWVSTTKGVLRDVEGNVIGT--FGISHDITRQKNAEQELKAAKEAAESA 272 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K + + P + + L H+ DV S S Sbjct: 273 NRAKSDFLANMSHEIRT------PMNAIIGMSELLLDSELQHQQDVYVRTVLDSAESLLS 326 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + E DF I L++ E+ L+ R H + P+ V Sbjct: 327 IINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAARAHRKGLELAWRVDPSIPQVVM 386 Query: 328 KCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 P+ + GN + ++ + KS++ ++ ++ D Sbjct: 387 GDPVRIRQILMNLVGNAIKFTEAGEIVVQVKSLEM-----STDSVELHFEVRDTGIGIQQ 441 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + A T + L + + ++ + V + Sbjct: 442 DRLQKIFDAFE-QADASTTRQFGGTGLGLAIASRLASAMGGMIWAESMLGQGSVFHFKIQ 500 Query: 445 RKMEIEVMQLCSILEATSD----GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 L S ++ D + +++ TN +L + + T Sbjct: 501 LTSSSRNEILDSQVDVLPDLDSRPVLVVDDN----ETN----RLLLQDMLNSWGLEVTSM 552 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--M 558 L +L L + +P ++L + Sbjct: 553 SRAADALAYLEAL--------------------PAGNVLPLLVSDVNMPGMDGFTLVETI 592 Query: 559 HD 560 D Sbjct: 593 RD 594 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 11/144 (7%), Positives = 34/144 (23%), Gaps = 6/144 (4%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363 + + L ++ P + + S L K K +I Sbjct: 124 IAQRDQIQDALLNEKFLLQTLLEHLPDAIYFKDAESRFTRVSGSMATLLKVKDASEIVGK 183 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 ++ + + +L + W ++ + Sbjct: 184 SDAD-FFPKEFAAEAYSDEQWLLETGSMMIGKEEMPI----WADGRQTWVSTTKGVLRDV 238 Query: 424 FPENMPQNGIEPEDVDTRINKRKM 447 + GI + + ++++ Sbjct: 239 EGNVIGTFGISHDITRQKNAEQEL 262 >gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 751 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 99/425 (23%), Positives = 184/425 (43%), Gaps = 29/425 (6%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPE--------DVDTRINKRKMEIEVMQLCSI 457 + P + +G+ ++ +++ +L I Sbjct: 171 EGAPYFSFLLDPVGIVAGGAVLLFYSGLGAAYLVTVIDFIAKAARSEIQLKKSEERLEGI 230 Query: 458 LEATSDGIAI---INREGII--LSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMN 510 ++ G+ + ++ G I + ++FG V+ IL+ PF + + + Sbjct: 231 VQNIP-GVILQLEMSVSGNIYYTYISDQAREIFGEKVDRILQNPFATLRFMPKEKLRAIV 289 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEK 568 H + + + L T+ + + + + + Y + D E + Sbjct: 290 HTIRNL--DRISVPLGWDVRLRTRRGHRWFRVTVSVTPSAEGTFYLNAIILDTEEIHAYQ 347 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK+ AE+ + KS FLA +SHE+RTPL IIG SE++ + +EYA Sbjct: 348 ERLKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG----ELVEYAR 403 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +G +L ++ND+LDIS++ESGK+ + P L + + K + Sbjct: 404 TIQTAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKNLRFVL 463 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744 A+ IP ++ D + Q+ N++ NAI FT G ++++ E E++ +VRDT Sbjct: 464 EVASEIPAVVISDEARLSQVLFNLVGNAIKFTSRG-EVVLRVWMEEEEGRAELVFQVRDT 522 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ EL + + F Q+ R +G+GLGL +AK +V+ G+ + S KG+ Sbjct: 523 GIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESEEGKGSCF 582 Query: 805 EIIFP 809 + P Sbjct: 583 TVRIP 587 >gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA] Length = 537 Score = 345 bits (884), Expect = 3e-92, Method: Composition-based stats. Identities = 93/402 (23%), Positives = 165/402 (41%), Gaps = 25/402 (6%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 IP ++ E ++ + + + E +L +IL +G+ + Sbjct: 157 GRGDYGRRIPVITRDEVGELARVMNEMASQIERNLAR--ISAEKNRLDTILRGMGEGLMV 214 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + G + N A +LFG R+ + ++ + Sbjct: 215 SDAGGTVTLVNPAFLELFGLTQSVEGRQIIEIARFPELHETFRAVVSSRSEH------VE 268 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 +EK + + HDIS+ K+ + + Sbjct: 269 EMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDISDLKRLEVV--------------RR 314 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DF+A VSHE+RTP+T I G++E + R + I + D++ DLL Sbjct: 315 DFVANVSHELRTPVTVIKGYAEALAGG-LVEEDPERAGRFLEIICSHSERLADLIRDLLT 373 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +S++ESG + L + LD AVS A L++ A K I+I S P +LAD ++Q Sbjct: 374 LSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRLEQ 433 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + +N++ NA+ +TP GG I +S ++ V + V DTG+G+ +L + + F ++ + Sbjct: 434 VLINLMDNALKYTPPGGTITLS-ADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAA 492 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + GTGLGL + K ++ + G + S KGT Sbjct: 493 RSRDEGGTGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTL 534 >gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603] Length = 1586 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 20/384 (5%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E EV + ++LE++ + I++ GII N K+FGY +++ P + S Sbjct: 706 EKEVFRFKALLESSPEATLIVDTNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHDLES 765 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWK 565 + +LR ++I + +E + I + +++ +I++ Sbjct: 766 ARAKHAQW---HELRPGNQRIEIAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRL 822 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L A AE+ + KS FLA SHEIRTPL AI+G + ++ ++ Sbjct: 823 AFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHR 878 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG +L IVND+LD+SKIE+ +M L P+ L E + E S+ A K + Sbjct: 879 LVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLD 938 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSNEE 736 + ++P ++AD ++QI N+LSNA+ FT G I + Sbjct: 939 FKLEIGVDLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALRAEIIDKFIWKGAEKNI 997 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + DTG+G++ ++ KPF Q S R GTGLGL + ++ GK + S Sbjct: 998 VRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVES 1057 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 +G+ PL S D I Sbjct: 1058 REGQGSTFWTDMPLQTLSD-EDII 1080 Score = 40.0 bits (92), Expect = 1.8, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 2/141 (1%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G GFG + RV D A ++ + + + + +++ I Sbjct: 93 RDIEREFPGALGFGFIR--RVPVDKEADFIVAARRDDFPNFTIRTLTPHDGDRFIIQYIY 150 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P+L+ E+ P LT+ + + L Sbjct: 151 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADNKPRRGVLILLPVYPS 210 Query: 289 FGTLQNNSKESFEYLSHRNHP 309 L + +L P Sbjct: 211 RMELNTPDEREKYFLGWAYAP 231 >gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1138 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 112/660 (16%), Positives = 243/660 (36%), Gaps = 51/660 (7%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SS 242 + +R + + + E + +I + + ++ Sbjct: 317 RIAAQQRELERERRLVASVFEASAASILITTASGEILAANPAFEQITGYSRAEVIGINPR 376 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + + + + S + + + Y + + ++ + + Sbjct: 377 ILKSGLNPPQTYEDLWE--TISHGAVWRGELQNRKKSGELYWEALAISPVVDDHGKITHF 434 Query: 303 LSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357 + + ++ L T+D V +G N +FL + + +V Sbjct: 435 IGVAPDITEGKLAEQALRASFSLLDATLDSTTDGILVVDRNGKAAKWNRAFLDMWQAPAV 494 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 A + A L + + + A+ L I+ P Sbjct: 495 ---AAAADNEEAVVAQALGQLASSGRGLTEVTGPHPNPAAGSLDQIELADGRVFERYSQP 551 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILS 476 Q + + + + + ++ Q ++ + I + +RE G I+ Sbjct: 552 QRIGEQ---IVGRVWCFHDVTRQKRTEAELRASEQQFRALFADSPVSILVHDRESGEIID 608 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N +G L+ + + ++ + + +Q ++ Sbjct: 609 ANPTAWTAYGLSSLQELQASDFWLAPPYSFAEALSWIRKAAAHGKQQ---FEWRNQRRDG 665 Query: 537 KLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE--------------- 579 +L + + + + T DIS+ K+ + +L+ + E Sbjct: 666 ELFWEHVTLSRVTIGGVERILATAIDISDRKRAEQQLAEYGEHLEVLVDERTTALAQART 725 Query: 580 ------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 ++ K++FL+R+SHE+RTPL AI+GF +++ PL + + I R+ Sbjct: 726 AIADAQAANAAKTEFLSRMSHELRTPLNAILGFGQLLALPGDAPLS-AQQADNVQEILRA 784 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G +L+ VN++LD+++IESG++ L E V L V+E ++LV+ A + + I + ++ Sbjct: 785 GRHLLEQVNEVLDLARIESGRIELSLEAVPLSSVVAECVALVRPLAEARGVSIDAAIDDS 844 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + AD ++Q+ LN+LSNAI + G + + E + V D+G G+ + L Sbjct: 845 --MLQADPTRLRQVILNLLSNAIKYNREHGTVRLD-NTREGERLRFAVTDSGRGIASEHL 901 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + +PF ++ +S EG+G+GL L+K +V+ G + S G+ PL Sbjct: 902 PRLFQPFERLESSY-EGIEGSGVGLALSKRLVEMMAGSIRVDSRIGVGSTFSFDLPLARV 960 >gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans PV-1] Length = 1427 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 113/646 (17%), Positives = 233/646 (36%), Gaps = 43/646 (6%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + + + SV +F Q+ + + Sbjct: 379 RRVQETQNRLSAVVEHTVDSVVVINHLGIIESVNPAVEKVFGYQASELLGNNVSMLMPEP 438 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL- 303 H D + + + + + + + + + + +S F Sbjct: 439 HRGVHNDYISRFMDSGDARVIG--IGREVEAIRSDGSLFPAELTVSRFELDSGTHFAGTL 496 Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIP----FFV-YSHGNLFYANPSFLLLTKYKSV 357 A + T F+V + N KY Sbjct: 497 RDLTQRKKAEAELEAERKSNEITKRALERGNIGEFWVNVHTAAILRVNDWACDYLKYSRE 556 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + + + P + A H + + + + FI Sbjct: 557 ELL------NMTIPEIAPEFPMELFPQTMEEIRGQGWARLESFHRAR--DGSVIPLEFIV 608 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILS 476 + ++ + + + + ++ ++ S++ A +D G+ + + I Sbjct: 609 DYVKAKDAKDDIIIAFSLDISERKQIEDEL-----RMMSLVAAETDNGVVVTGLDQKIKW 663 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKE 535 N + + GY ++++ + FL P ++ + + ++ + K Sbjct: 664 VNPGFTDITGYDFDEVIGRKPGDFLHG--PKTEQDAVSCLGTAIRKQERVATDITNYGKN 721 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + L I I + S + +++E ++ ++ AK+ AE + KS FLA Sbjct: 722 GEPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAELANRAKSSFLAA 781 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL ++G +++++ R + S ++ I++D+LD SKIE Sbjct: 782 MSHEIRTPLNGVVGTIDLLEHTRLESN----QRDMVRTARDSSLTLMGIIDDVLDFSKIE 837 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PVSL V + +Q A + I + IP ++ DL ++QI LN+ Sbjct: 838 AGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNL 897 Query: 712 LSNAIHFT-----PSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 NAI F+ G++ +S + ++ L V+D G+GM+ EK +PF Q Sbjct: 898 TGNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQ 957 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +S R GTGLGL +++ +V+ G + S +G + Sbjct: 958 AESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVAL 1003 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 38/373 (10%), Positives = 102/373 (27%), Gaps = 25/373 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY----GKT 147 G ++ ++ + K G A +++G + + H + ++I + + + Sbjct: 406 GIIESVNPAVEKVFGYQASELLGNNVSMLMPEPHRGVHNDYISRFMDSGDARVIGIGREV 465 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDKK 203 +G+ + ++ + + SG G + A + + Sbjct: 466 EAIRSDGSLFPAELTVS---RFELD---SGTHFAGTLRDLTQRKKAEAELEAERKSNEIT 519 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261 L G V I + ++ ++T + ++ + Sbjct: 520 KRALERGNIGEFWVNVHTAAILRVNDWACDYLKYSREELLNMTIPEIAPEFPMELFPQTM 579 Query: 262 LTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E FH + + + ++ + ++ S ++ Sbjct: 580 EEIRGQGWARLESFHRARDGSVIPLEFIVDYVKAKDAKDDIIIAFSLDISERKQIEDELR 639 Query: 321 LTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + V + + NP F +T Y + I G L PK + Sbjct: 640 MMSLVAAETDNGVVVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPG--DFLHGPKTEQDA 697 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 R + + N E + ++ E + +E + Sbjct: 698 VSCLGTAIRKQER---VATDITNYGKNGEPY-ILHIEIMPIRDESGEVVEFIALESNVTE 753 Query: 440 TRINKRKMEIEVM 452 R ++++ Sbjct: 754 QRRADKEIKEAKE 766 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 40/448 (8%), Positives = 106/448 (23%), Gaps = 64/448 (14%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146 +K ++ G ++IG + D + + +G +++Q Sbjct: 655 TGLDQKIKWVNPGFTDITGYDFDEVIGRKPGDFLHGPKTEQDAVSCLGTAIRKQERVATD 714 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T + G + I++ +PI + E F + K + Sbjct: 715 ITNYGKNGEPYILHIEI--MPIRDESGEVVEF--IALESNVTEQRRADKEIKEAKEAAEL 770 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + K + + P + + L + + Sbjct: 771 ANRAKSSFLAAMSHEIR-------TPLNGVVGTIDLLEHTRLESNQRDMVRTARDSSLTL 823 Query: 267 SSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----------PSLSAYF 315 + + DF I + +LQ + E + Sbjct: 824 MGIIDDVLDFSKIEAGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEV 883 Query: 316 DEGENLTPETVDKC-------PIPFFVYSHGNLFYANPSFLLL--------TKYKSVDDI 360 + + G + + + + K Sbjct: 884 MGDLVRLRQILLNLTGNAIKFSAGLKSGRQGRVE-VSAALESVEEQDVKIRLSVKDNGIG 942 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPV-----------MLYRSDRTCIAASARL-----HTIQ 404 A L ++++ + L I +RL ++ Sbjct: 943 MSADAQEKLFRPFVQAESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVA 1002 Query: 405 WNRENSLAMTFIPFEKANQF--------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + +L P PE + + + + + + Sbjct: 1003 LTMKVALDQQVTPDSGLAGLQVLLVKGHPEAVRIIDVYLRFAGVIVTLATPADALERFKT 1062 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKL 484 ++ + + +I+ +G TN+ +++ Sbjct: 1063 LVNNDGEVLLVIDSQGEEERTNQMRAEM 1090 Score = 38.1 bits (87), Expect = 6.3, Method: Composition-based stats. Identities = 17/242 (7%), Positives = 70/242 (28%), Gaps = 11/242 (4%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 + +++ + +++ M + +++ ++ + ++ Q ++ +G Sbjct: 540 ILRVNDWACDYLKYSREELLNMTIPEIAPEFPMELFPQTMEEIRGQGWARLESFHRARDG 599 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + + + + + + I+ + ++ + + L E G Sbjct: 600 SVIPLEFIVDYVKAKDAKDDI-------IIAFSLDISERKQIEDELRMMSLVAAETDNGV 652 Query: 215 SSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE---ESSLP 270 +K + ++V + + L + + + Sbjct: 653 VVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPGDFLHGPKTEQDAVSCLGTAIRKQERVA 712 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + N Y +++ S E E+++ ++ + D+ E + Sbjct: 713 TDITNYGKNGEPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAELAN 772 Query: 331 IP 332 Sbjct: 773 RA 774 >gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis HTE831] gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 453 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 166/366 (45%), Gaps = 29/366 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +++ QL +I++ G+ +I+ +G + NR ++FG + + E Sbjct: 112 QMQSEQLTTIVDNMQSGLVLIDEKGYVHVVNRKFLEMFGEEESNYRGHLYYDVFENENVH 171 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISE 563 + + + L + + ++ + L ++DI+E Sbjct: 172 ETVQKTFLYEETVKKSFVHREGLNK------IYVEVVGAPIFNERNMLKGAVLVLYDITE 225 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ + + DF+A VSHE+RTP+T+I GF+E + + + +P Sbjct: 226 LKKLE--------------KMRKDFVANVSHELRTPITSIRGFAETLLDNN---ITDPAT 268 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E+ I + + + ++ DLL +S++E L + + + V E + + A K Sbjct: 269 KEFMEIIYKESHRLQLLIEDLLALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKN 328 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + + + AD +KQ+ +N++ N+IH+TPSGG I ++ + + + +V+D Sbjct: 329 LTFDLEVPDQL-TMRADKDRMKQVLINLIDNSIHYTPSGGDICLAIS-EETDVIHFQVKD 386 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+GM + + F ++ ++ GTGLGL + K +V+ + GK + ST +GT Sbjct: 387 SGIGMDEKSQTRVFERFYRVDKARSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTT 446 Query: 804 IEIIFP 809 I I P Sbjct: 447 IHIYIP 452 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 9/244 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID GY+ ++ + + G G DV + ++ + + + T K + Sbjct: 132 IDEKGYVHVVNRKFLEMFGEEESNYRGHLYYDVFENENV--HETVQKTFLYEETV--KKS 187 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 EG + +++ PI++ G +++ R D + H Sbjct: 188 FVHREG-LNKIYVEVVGAPIFNERNMLKGA--VLVLYDITELKKLEK--MRKDFVANVSH 242 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E++ +S+ + P + ++ + L + Sbjct: 243 ELRTPITSIRGFAETLLDNNITDPATKEFMEIIYKESHRLQLLIEDLLALSRLEREDFRL 302 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + D + + +N + + NL ++ Sbjct: 303 LIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQLTMRADKDRMKQVLINLIDNSIHY 362 Query: 329 CPIP 332 P Sbjct: 363 TPSG 366 >gi|167644019|ref|YP_001681682.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167346449|gb|ABZ69184.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 901 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 103/743 (13%), Positives = 223/743 (30%), Gaps = 56/743 (7%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWP 151 G ++ + G ++G L++ + + Sbjct: 38 GRFATVNPAWTRVTGWSRQDLVGQPALRFVHPESRQDFIETASLIRAAGEAFNRLKVVCK 97 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G + L + N E G + D RA + L Sbjct: 98 NGG-----WVWLESQSRLGPNGEMVGA-----LRDVTADMARRAELAVARQTRELLASSA 147 Query: 212 KGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + P + ++ + + + Sbjct: 148 GIGVWSYEPHGQHIEWSRDILTVTGLEPEDIAQPDQFYDRLDPAEREGLRATFDAAVRTG 207 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + GE Sbjct: 208 EGATIEHRLRGAGDQWFTYRATFRTEPRGDGLFALKGISQNVTDVARTRDAAVWGERQAR 267 Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA-----GGLSTLLDAPKLSD 377 V++ P +Y L +P FL + + I + G Sbjct: 268 RLVEEAPFAVALYDRDLRLRVVSPRFLEIFQATEEGVIGRSLHDLTSGTRRRFVNAV--- 324 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A+ + R + A R HT++W + E + Sbjct: 325 ERALTGETVVRREDQLRDALGRSHTLRWEARPW----------RDADGEIGGVITYMDDV 374 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 +R+ + +L L A G+ I+ + ++ G + + Sbjct: 375 TALSDARREARVNARRLRVALGAAQAGVYEIDHVDKAFWGSPEFHRILGRRISYEDVRSA 434 Query: 498 TVFLEQNTPSV----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + ++ + + E + + + +++ Sbjct: 435 VWPMIHPDDVASVYDASDAWLGKREDGGGRSFDVRVVTGRGETRWIRIFHEVRQDAGGRI 494 Query: 554 Y--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI + K+ + L A++ A+ + K+ FLA +SHEIRTP+ ++G ++K Sbjct: 495 RKAFGLILDIDDKKRAELALVEAERAAQAANEAKAQFLANMSHEIRTPMNGVLGVMHLLK 554 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ + G ++ +++D++D S+IE+G++++ E V E Sbjct: 555 REKLPGDAD----HLLGEALACGRMLSTLLDDVIDFSRIEAGRLDVTREAVDPSELAMSV 610 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 L++ A K + +R A ++ IL D ++Q N++ NA+ FT +G + + Sbjct: 611 ARLLRAQAEHKGLELRVE-APDLGLILTDPSRLRQALFNLVGNAVKFTLAGS-VTLKVRL 668 Query: 732 TSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +++ V DTGVG+ + + F Q S R G+GLGL + + + Sbjct: 669 LDGGGPQDVPKIVFEVIDTGVGIAAEAQARLFERFQQADASTTRRFGGSGLGLAITRRLA 728 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 + G+ S G+ + Sbjct: 729 EMMGGEVGFTSREDAGSTFLLTI 751 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 75/263 (28%), Gaps = 19/263 (7%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D F V S G NP++ +T + D + L S + I+ Sbjct: 25 FDHSHDLFAVVSRGRFATVNPAWTRVTGWSRQDLVGQP----ALRFVHPESRQDFIETAS 80 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L R+ RL + N + + E + D+ R Sbjct: 81 LIRAAGEAF---NRLKVVCKNGG---WVWLESQSRLGPNGEMVGALRDVTADMARRAELA 134 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQN 504 L S + G+ G + +R + + G EDI + F L+ Sbjct: 135 VARQTRELLAS---SAGIGVWSYEPHGQHIEWSRDILTVTGLEPEDIAQPDQFYDRLDPA 191 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDI 561 + + T+E G ++ + R + P ++ Sbjct: 192 EREGLRATFDAAVRTGEGATIEHRLRG--AGDQWFTYRATFRTEPRGDGLFALKGISQNV 249 Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584 ++ + ++ ++ A + Sbjct: 250 TDVARTRDAAVWGERQARRLVEE 272 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 36/376 (9%), Positives = 93/376 (24%), Gaps = 16/376 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W+ + HG E S ++ G + + D D + D R Sbjct: 151 VWSYEPHGQHIEWSRDILTVTGLEPEDIAQPDQFYDRLDPAEREGLRATFDAAVRTGEGA 210 Query: 145 GKTTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G + P G V D G+R ++ Sbjct: 211 TIEHRLRGAGDQWFTYRATFRTEPRGDGLFALKGISQ--NVTDVARTRDAAVWGERQARR 268 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLL 262 + + S + + V + + + Sbjct: 269 LVEEAPFAVALYD-RDLRLRVVSPRFLEIFQATEEGVIGRSLHDLTSGTRRRFVNAVERA 327 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 + E+ + ++ +T + ++ E +++ + + + Sbjct: 328 LTGETVVRREDQLRDALGRSHTLRWEARPWRDADGEIGGVITYMDDVTALSDARREARVN 387 Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLS 376 + + + F+ +P F + + S +D+ A + S Sbjct: 388 ARRLRVALGAAQAGVYEIDHVDKAFWGSPEFHRILGRRISYEDVRSAVW-PMIHPDDVAS 446 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 +A + R D + R+ T + + + + + G+ + Sbjct: 447 VYDASDAWLGKREDGGGRSFDVRVVTGR---GETRWIRIFHEVRQDAGGRIRKAFGLILD 503 Query: 437 DVDTRINKRKMEIEVM 452 D + + + Sbjct: 504 IDDKKRAELALVEAER 519 >gi|218777967|ref|YP_002429285.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218759351|gb|ACL01817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1147 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 108/750 (14%), Positives = 238/750 (31%), Gaps = 53/750 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 +G ++ ++ + G M+ + D + R + Sbjct: 290 NGVIRFVNAKAGDFTGVDPQGMLARDMTDFIHPEDLALVTERHAQRLRGEAPPSSYSFRL 349 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + ++L+ PI E+ G + +K+F + Sbjct: 350 LHESGHVRWVELSVTPI-----EWEGKPATLNFLRDISDRKKAENEIIEREKRFRATLDN 404 Query: 211 KKGHSSVEKEKYDIFSQQSPPP----HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + S+ + Y + Sbjct: 405 MLEGCQIIGFDWSYIYLNDAAAKHGRMNKQDMTGKSMLDLYPGIEQTEIFALMQDGMINR 464 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 S + F+ N + + + + F E E+ Sbjct: 465 VSHQVENVFYYGNGSNRWFELSIQPVPE--GIFVLSIDVTERKWAEHSFKESESRFRTLF 522 Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 ++ PI V +G +N + L Y + + L+ + A + ++ Sbjct: 523 EQAPIGIIMVAPNGFPIRSNKALRELVGYTEKEI-----CARSFLEWTHPDERKASQRLI 577 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + N + + N + + ++++ ++ Sbjct: 578 KSIAAGEETLKIMEKRYLHKNGD-MVWGRTAVTAVRNSAGAVEYFIAMVEDIRESKMAEQ 636 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQN 504 ++ + S+ + D + +G + N+A LFG ++ I+ KP + Sbjct: 637 VLQDSENRYRSLFMHSPDAVFTA-LDGKVFLVNQACLNLFGAKKDEDIVGKPILDLVAPE 695 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562 S+ + + L + K + + + + + + + DIS Sbjct: 696 FRSLAAKRRDILDAEGRPLPL-VEMQMLRMDGKPVDVEVLTSAFSMGAAMATHVILRDIS 754 Query: 563 EWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 K + + ++ +S V+H++ L+ IIGF E++ + + Sbjct: 755 ARKNMEKEKEQLQEQLSMSQKLESIGRLAGGVAHDLNNLLSPIIGFGEILSDDIG---PD 811 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 E I +G ++V LL S+ K L F+P+ + + + +L++ Sbjct: 812 DPKREAVEEILGAGLRARNLVRQLLAFSR----KQTLEFKPLDISKTLGAFKNLLRRTIP 867 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------- 733 E I IR + + ++AD ++Q+ +N+ NA P+GG + + T Sbjct: 868 E-DIEIRVISSQKVLPVMADAGQIEQVIMNLAVNAADAMPNGGVLTLETGMADLDADYAK 926 Query: 734 -------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 L + DTG GM E+A +PF GTGLGL +V Sbjct: 927 LHSEVQPGRYAALVISDTGQGMDQAARERAFEPFFSTKGKH-----GTGLGLATVYGIVK 981 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G +++S +G +I P+ + S P Sbjct: 982 QHGGSIWLYSEEGQGATFKIYLPVAEESPP 1011 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 57/543 (10%), Positives = 135/543 (24%), Gaps = 25/543 (4%) Query: 44 PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103 P ++ EQ + Q S + P F G + +++ Sbjct: 5 PSYEELEQQVLSLQRDNSQLREEERRCRSLMDEAPGLICT-FL----PDGEIVYVNQPYC 59 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPID 162 ++ G + D L R+N T + + +G+ Sbjct: 60 AYFKKDFDELAGTSFLLLLPEPDRDAVLKNIHALTRENPTMPHEHQVVAADGS--VRWQR 117 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 ++ N E ++ G + KKF + E V E Sbjct: 118 WTNRAFFNSNGEAEMYQAVG--EDVTERKLAAQAILKERKKFEDVLEKFPYGVCVVDENR 175 Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 I + L + KD L +E + + + Sbjct: 176 RIEFVNKK--IREEFGEPGDLLCHQYFKDMPGLCPACRTGAAFQEEFCKMEWRSQGKDRH 233 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 + + + E E V+ ++ +G + Sbjct: 234 YEVYDIPLKNENGSKSRVQIFNDITEQKKAESALQESEAKYRALVENAGEAIYIVQNGVI 293 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + N T G L+ + ++ A+ + R S+ Sbjct: 294 RFVNAKAGDFTGVDPQ------GMLARDMTDFIHPEDLALVTERHAQRLRGEAPPSSYSF 347 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + + + D + + ++ + + L+ Sbjct: 348 RLLHESGHVRWVELSVTPIE--WEGKPATLNFLRDISDRKKAENEIIEREKRFRATLDNM 405 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +G II + + N A +K +D+ K + + + + + + Sbjct: 406 LEGCQIIGFDWSYIYLNDAAAKHGRMNKQDMTGKSMLDLYPGIEQTEIFALMQDGMINRV 465 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 +E + + L I + D++E K ++ ++ Sbjct: 466 SHQVENVFYYGNGSNRWFELSIQPVP----EGIFVLSIDVTERKWAEHSFKESESRFRTL 521 Query: 582 SSH 584 Sbjct: 522 FEQ 524 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 89/285 (31%), Gaps = 15/285 (5%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 ++ E E +D+ P + G + Y N + K D + G S Sbjct: 18 QRDNSQLREEERRCRSLMDEAPGLICTFLPDGEIVYVNQPYCAYFKK----DFDELAGTS 73 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 LL P+ + +K + + + H + + + N E Sbjct: 74 FLLLLPEPDRDAVLKNIHALTRENPTMP---HEHQVVAADGSVRWQRWTNRAFFNSNGEA 130 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + ++ + + E + +LE G+ +++ I N+ + + FG Sbjct: 131 EMYQAVGEDVTERKLAAQAILKERKKFEDVLEKFPYGVCVVDENRRIEFVNKKIREEFGE 190 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 P + + + F E + + K+ I +K Sbjct: 191 PGDLLCHQYFKDMPGLCPACRTGAAFQE-------EFCKMEWRSQGKDRHYEVYDIPLKN 243 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 S +DI+E K+ ++ L ++ + + + V Sbjct: 244 ENGSKSRVQIFNDITEQKKAESALQESEAKYRALVENAGEAIYIV 288 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 28/292 (9%), Positives = 83/292 (28%), Gaps = 15/292 (5%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + + ++ +SE+ F + + +G+ ++ L + +G ++ Sbjct: 500 DVTERKWAEHSFKESESRFRTLFEQAPIGII-MVAPNGFPIRSNKALRELVGYTEKEICA 558 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 + + + + + + G V A + + Sbjct: 559 RSFLEWTHPDERKASQRLIKSIAAGEETLKIMEKRYLHKNGD--MVWGRTAVTAVRNSAG 616 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230 F +V R + + + ++ L + Q+ Sbjct: 617 AVEYF--IAMVEDIRESKMAEQVLQDSENRYRSLFMHSPDAVFTALDGKVFLVNQACLNL 674 Query: 231 PPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + ++ V + + A + L ++ +L +E LP E + ++ Sbjct: 675 FGAKKDEDIVGKPILDLVAPEFRSLAAKRRDILDAEGRPLPLVE-MQMLRMDGKPVDVEV 733 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 T + + S ++ + + ++ + + S G L Sbjct: 734 LTSAFSMGAAMATHVILRDISARKNMEKEK---EQLQEQLSMSQKLESIGRL 782 >gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum Ice1] Length = 567 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%) Query: 443 NKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ + +L + L GIA+++ E IL N + +L G +++ K Sbjct: 21 AAEQINENIAELQAYALANADMGIAVLDEEYQILVWNAWLERLTGKKADEVRGKKLVELF 80 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLS-----LRIIIKKLPFSSC 553 + SV + + LL +++ ++ Sbjct: 81 PRFNHSVFRPIFERAFFDGQNRFFSGAFHRYFFPPADGSLLPYIRQNMQVQPARIGDRQY 140 Query: 554 YSLTMHDIS--------------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + DI+ E K K +L ++++A + KS+FLA +SHEIRTP Sbjct: 141 VLIQITDITRQELRVRQLKGLIRELKLAKEELKVSREMAVVANRAKSEFLANMSHEIRTP 200 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + AI+GF ++ N +Y + + ++ ++ D+LDISKIESG++ + Sbjct: 201 MNAILGFVDLTLATEL----NAEQSKYLGMVRSAAQSLMRLLEDVLDISKIESGQLVVEQ 256 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718 +P SL + A+ L+ + A++K + +R +P +L D + Q+ +N+LSNA+ F Sbjct: 257 QPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGDANRLTQVLVNLLSNAVKF 316 Query: 719 TPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T +G ++ + + ++ LR VRDTG+G+ LE + F Q+ +S R G+G Sbjct: 317 TDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVFEKFYQVDSSSTRRFGGSG 376 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL + + +V+ G+ ++ S KG+ + P Sbjct: 377 LGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 57/502 (11%), Positives = 141/502 (28%), Gaps = 37/502 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGK 146 +D + + L + G A ++ G +L ++ + I QN ++ Sbjct: 47 LDEEYQILVWNAWLERLTGKKADEVRGKKLVELFPRFNHSVFRPIFERAFFDGQNRFFSG 106 Query: 147 TTLW----PIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 P +G+ L Y+ ++ P +R++ + I + L + L Sbjct: 107 AFHRYFFPPADGSLLPYIRQNMQVQPARIGDRQYVLIQITDITRQELRVRQLKGLIRELK 166 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L ++ + K + + S M + + A + + +++ + Sbjct: 167 LAKEELKVSREMAVVANRAKSEFLANMSHEIRTPMNAILGFVDLTLATELNAEQSKYLGM 226 Query: 262 LTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S L + D I Q +Q +L + + + + LS + + Sbjct: 227 VRSAAQSLMRLLEDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQ 286 Query: 318 GENLTPE------------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-- 363 PE V+ G + + S+ Sbjct: 287 IPAGVPEVLVGDANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTG 346 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G++ + R + + + ++ + + Sbjct: 347 IGIAPDRLEAVFEKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFY 406 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR---- 479 +P+ +++R M + EA I +++ + NR Sbjct: 407 VTLPFGIAAPQPDQYAEDVSERDMGLGEND---AGEARGAHILLVDDD----VFNRTIIG 459 Query: 480 AVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A + +GY + + K LE+ ++ + K + Sbjct: 460 AWLRRWGYRLREATNGKEALAVLEEERFDLILMDEQMPGMSGIETVDRIRADARWKNIPV 519 Query: 539 LSLRIIIKKLPFSSCYSLTMHD 560 +++ K + M+D Sbjct: 520 IAVTANAMKGDRERFLAAGMND 541 >gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 595 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL +IL + +DG+ IN +G IL TN + + V + + Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNVQADDHL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P ++ + Q +E G + L + + D++E + Sbjct: 304 PPEAKELFQNTVNTEKEQMIEMTLQGR----SWVLLMSPLYAQSHVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + + E Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEDD--RKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++ESG LH+ V+LDE + + A EK I Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNIS 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + N D ++Q+ N++ NA+ T SGG + I+ + + + V+D+G Sbjct: 464 LTDDISLNETEFAFDEDKMEQVFTNLIDNALRHTQSGGTVHIAVQSVKDG-LKIDVKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase [Thermoanaerobacter ethanolicus CCSD1] Length = 361 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 24/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L +IL++ +G+ + IL N A K+ +D++ + Sbjct: 6 KETIEELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRHILEI 65 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559 + S ++ + ++ + K K+ + I+ + + + L + Sbjct: 66 VR---NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 121 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E ++ + +S+F+A VSHE+RTPLT+I GF E + R G + Sbjct: 122 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 164 Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP+ + + + ID + ++ND+L +S+IE+ K E + LD + + + ++ Sbjct: 165 NPQARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKV 224 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I ++ I + Q+ +N++ N I +TP GG + +ST +++I Sbjct: 225 ARNKNITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 283 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G+G++ + + + F ++ S+ + GTGLGL + K +V++ G+ ++ S Sbjct: 284 ITVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 343 Query: 799 AKGTLIEIIF 808 +GT I F Sbjct: 344 GRGTKFIIKF 353 >gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39] Length = 933 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 114/589 (19%), Positives = 223/589 (37%), Gaps = 32/589 (5%) Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 ++ + ++ + +++L + + ++ ++ G Sbjct: 104 EIIAKIQHQLEWRSLQIQLDQVTDNHPQTTLGKYQVAADLSDFSAIIQELIGVKPEEIMA 163 Query: 299 SFEYL-SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYK 355 + + L + + E ++ + G AN F L Y Sbjct: 164 NPKMLMDIIDMKQVEQRLALRETQLRAIFEQAAVGINQADIKSGLFIRANQCFCELLGYS 223 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + T D P+M + S + N ++ Sbjct: 224 EHELYQK-----TFEQVTHPEDLIRCLPLMQELHRGEIESVSLEKRYLHKNG-MAIWTKG 277 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGI 473 N E + I + D R + ++ +L SI I +++ + + Sbjct: 278 SFSLIYNSQGEAISHLAIVVDISDRRRAEEALKFSQARLESIATNIPGAIYSYVVSSDNL 337 Query: 474 I--LSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + +LF E +L K + + + + S + Sbjct: 338 FGFEYISEGCRELFELEAEQVLADSKILLQQIHPDDVPTYYQKI--MDSQADLSSFSHEW 395 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K + + + + + DIS+ KQ + +L AK++AE + K+ Sbjct: 396 RHILPSGKTRWILGNCRPEKRPNGDILWQGVVLDISDRKQAEEELVRAKEVAEAANQAKT 455 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FL +SHE+RTPL AI+GF++++ +G N I RSG +L ++ND+LD Sbjct: 456 TFLTNMSHELRTPLNAILGFTQLL---NYGDNLTEHQHNNLNIIQRSGEHLLSLINDILD 512 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 +SKIE+G++ + + L + E L L A++K + + ++ ++PR I D ++ Sbjct: 513 LSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKASQKNLYLDCVYSPDLPRYIRGDRLKLR 572 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRVRDTGVGMTNYELEKAMKP 759 QI +N++ NAI FT G +++I+ H + + V D+GVGMT E+ + +P Sbjct: 573 QIMINLIGNAIKFTEQG-RVVITADHKFISSSPPICCLQIAVTDSGVGMTPEEIAQLYEP 631 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q + EGTGLGL + + + + + S GT + Sbjct: 632 FFQAQAGIDSQ-EGTGLGLTICQKYLQLMGAEIEVISEVGHGTTFKFKL 679 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 30/125 (24%), Gaps = 6/125 (4%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLW 150 G ++ + +G ++ V+ + + L R + + Sbjct: 207 GLFIRANQCFCELLGYSEHELYQKTFEQVTHPEDLIRCLPLMQELHRGEIESVSLEKRYL 266 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G + + + IY+ E IV K + + Sbjct: 267 HKNG--MAIWTKGSFSLIYNSQGE--AISHLAIVVDISDRRRAEEALKFSQARLESIATN 322 Query: 211 KKGHS 215 G Sbjct: 323 IPGAI 327 >gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis str. Paraca] Length = 549 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 184/400 (46%), Gaps = 20/400 (5%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG--IILSTNRAVSKLFGYP 488 E + + ++ + I G+ +++ +G + + ++FG Sbjct: 8 ETALRERQKAADTIKKSEDRFGRIANNMP-GVLYQYVLHPDGSHNFMYMSERCQEIFGLD 66 Query: 489 VEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIII 545 + I R E + + + + E + + E K + + Sbjct: 67 ADTITRDANQLFQLFEAEDFISLKASILLSATTLNTWSWEGKLVTPSGENKWIQGISQPE 126 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 +++ + + DISE K + +L ++ + K +FLA +SHE+RTPL I+G Sbjct: 127 RQVNGDIVWDGVVVDISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILG 186 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 SE +K G L N I++SG +L++++D+LDISKIE+GK+ L+ V + Sbjct: 187 MSEALKEGILGAL-NSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQ 245 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG 723 E + +++LV A K+I I + + + I D R ++Q+ +N+LSNA+ FT G Sbjct: 246 ELCTSSLTLVNHLAFTKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSG 305 Query: 724 QIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +I ++ ++ + + V D G+G+ +L K PF QI +S + GTG Sbjct: 306 KINLNVGIKTSPNAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTG 365 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 LGL L K +++ + G + S KG+ + P +TS+ Sbjct: 366 LGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYQETSN 405 >gi|332525071|ref|ZP_08401250.1| putative hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] gi|332108359|gb|EGJ09583.1| putative hybrid sensor and regulator [Rubrivivax benzoatilyticus JA2] Length = 820 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 124/744 (16%), Positives = 253/744 (34%), Gaps = 67/744 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYG 145 W +DA L + T + G ++ + + + L + + Sbjct: 114 WELDAEHRLVAAYRQRGDTSPLAGTEARGRLPWELPQFQCDDETLDLLRADLDARAPFRD 173 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---- 201 + W + + + ++ P F+GF +G+ + D R + Sbjct: 174 RLVHW-LGADGRPLSLLVSGEPRRDERGGFAGF--WGVARDVSAEMDARRALAAAETRCE 230 Query: 202 ----KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + + L ++G + L + + + + + + + Sbjct: 231 ELFARIPTPLVLHRRGRVLDANPAALVLLGCDMLETLVGHELLGAYEAGESRERERRRFD 290 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + ++ LS + ++ Sbjct: 291 ELEGAPVGTALTIADFRLQPRGGERLSVRAISVRIEAEGG--PATLSIYADDTERLAAEQ 348 Query: 318 GENLTPETVDKC----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + P + G AN +F+ T + + D + L Sbjct: 349 TLRRSEAVLAHLFASSPELITLTDLGTGRFTMANDTFVRATGFAAADVVGRTAIELGLWL 408 Query: 372 APKLSDNNAIK----------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + A + P D ++ + L + + Sbjct: 409 HDEQRRQFAEQMQRSGTATDLPADFRARDGRVLSVLVSGTRFSVEGHDYLVVNARDVTET 468 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + +IL+ S GIA+ R G + NR Sbjct: 469 ERSRRERE--------------------------AILDNASIGIAVT-RGGRFMMANRRF 501 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++FG+P ++ +P + ++ + +L + +E ++ Sbjct: 502 EQMFGWPPGGLVERPAAAVWPGSD-EIVEIARGTLPALARGEPVEIEGHAQRRDGSTFLA 560 Query: 542 RIIIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 R+++K + P + D++E ++ + +L+ A+ AE S KS FLA +HE+R Sbjct: 561 RLVVKAVDPVDPARGGAVWIVEDVTERREFERRLAAARDAAEAASRAKSAFLANTNHELR 620 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 PL +I +++ ++ L +Y ++I S + IV+D+LD+SKIE+G+M L Sbjct: 621 NPLNGMINLAKLARD---AQLDEQVRQQYLDHIAESAQSLAAIVSDILDVSKIEAGRMEL 677 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716 EP L E + A + A + + + + ++ D V+QI N L NA+ Sbjct: 678 ASEPFDLVELLHGAQRVYATMAAARSLTLDFDIGPGLDGTVVGDPLRVRQIVTNFLGNAL 737 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT +GG + V L V DTG G+ + +PF Q S R GTGL Sbjct: 738 KFTAAGGV-RVVVRRVPAGRVRLEVHDTGPGIDPATQARLFRPFTQADESTTRRFGGTGL 796 Query: 777 GLPLAKAMVDANMGKFYIFSTPAK 800 GL + + + G+ + S P + Sbjct: 797 GLSICRELATLMGGEVGVDSQPGR 820 >gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1] Length = 1522 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 116/648 (17%), Positives = 233/648 (35%), Gaps = 38/648 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + D + AL + + ++K+ V + I + ++ Sbjct: 369 LARNMTADLERLALVAKNTSNAVVITDVKRNIVWVNEGFERITGYSQAEAFGKSPGRLLQ 428 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 D + + + T + +Y + N+ E + Sbjct: 429 CKNT-----DRGVASQMRVALDAGEPFKGEIVNCTKSGQEYWVELEIQPRYNDKNEPIGF 483 Query: 303 LSHRNHPSLSAYFDEGE-------NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 ++ + S + + T++ I G + N +F ++ Y Sbjct: 484 MAIESDISERKATYQRLEVALRENDALLSTLNLHGITSTADRDGIITDVNDAFCTISGYS 543 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + L + + + ++ I+ + + + + Sbjct: 544 REELMGQ----TYRLVDSHTHSTDFWQSMWNDIANG--ISWRGEICNKAKDG-SLYWVDT 596 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 N + I+ + + + + I QL + GI N L Sbjct: 597 TIAPFNNSSGQVERYISIQVDITANKNQQANLIIAKNQLVRAADVAELGIWTWNIPEDTL 656 Query: 476 STNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 S + ++ ++G P E++ P L Q + + L + Sbjct: 657 SFDDRMNDIYGVP-EELHNAPIPLAYWYSLLHQEDVPNVKSAIKAALENKSVYRQVFRIV 715 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + +++ DI++ ++ +N L A++ AEK + KS F Sbjct: 716 VKN-QVHFIQSTGTVEQDENGKALLMMGINRDITQQREAENILKTAREAAEKANKAKSAF 774 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTP+ AI+G +++ + + +YA + + +L ++ND+LD S Sbjct: 775 LANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFS 830 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 KIESGKM L P + + + ++ Y K++ + ++P+ + D ++QI Sbjct: 831 KIESGKMELECIPFDIHIMLRDLAVILSSYLKVKKVEVLFDIDPSLPQFVEGDSMRLQQI 890 Query: 708 ALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 N+ NA+ FT G ++ I + +V L VRDTG+G+ E F Q Sbjct: 891 LTNLGGNALKFTELGEVVLFIKVIAQDSHQVTLHFGVRDTGIGIAPENQESIFSGFTQAE 950 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810 S R GTGLGL +++ V G + S +G+L I PL Sbjct: 951 ASTTRRFGGTGLGLVISQRFVALMGGTLTLESQLGQGSLFHFTITLPL 998 Score = 83.9 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 56/421 (13%), Positives = 112/421 (26%), Gaps = 36/421 (8%) Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 EF G RGFG + RV + + + + + + I P Sbjct: 111 EFPGVRGFGFIQ--RVQRNQLNSFIADVRADGAPNYALRQLQDKQHDDLYIIRYIEPSEG 168 Query: 234 LRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + V S A + + K L + + + T Sbjct: 169 NQGAEGLDVGSEPVRRAAVLSAIDSGKPTLSGAIHLVQSNFKAPGVLLFVPVYIYGSNPT 228 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF---FVYSHGNLFYA 344 + S + + D E + E D ++ + A Sbjct: 229 TPAERRASLVGVLYSPIAIAELLSDIPESMNGRVDVELFDSLNDLSNKNLIFDADSSKSA 288 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + S +++ LS + + + L S A Sbjct: 289 DF---------SPTELQSDKVLSARIFHSTNVLRLPGRDMTLRISSTPTFEAQI------ 333 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 E + F + + R M ++ +L + + TS+ Sbjct: 334 ---ERYVPWLLFAFGLLLSSAFALLIRQQVSGRNRAEMLARNMTADLERLALVAKNTSNA 390 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQ 523 + I + + I+ N ++ GY + K L+ NT + + L Sbjct: 391 VVITDVKRNIVWVNEGFERITGYSQAEAFGKSPGRLLQCKNTDRGVASQMRVALDAGEP- 449 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + TK + + + I+ + DISE K +L A + + Sbjct: 450 -FKGEIVNCTKSGQEYWVELEIQPRYNDKNEPIGFMAIESDISERKATYQRLEVALREND 508 Query: 580 K 580 Sbjct: 509 A 509 Score = 70.8 bits (172), Expect = 1e-09, Method: Composition-based stats. Identities = 31/375 (8%), Positives = 93/375 (24%), Gaps = 17/375 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146 D + ++E + G + G + + D + + L + G+ Sbjct: 394 TDVKRNIVWVNEGFERITGYSQAEAFGKSPGRLLQCKNTDRGVASQMRVALDAGEPFKGE 453 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKF 204 G ++L P Y+ E GF I + D Sbjct: 454 IVNCTKSG--QEYWVELEIQPRYNDKNEPIGFMAIESDISERKATYQRLEVALRENDALL 511 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 S L+ ++ + + ++ T + Sbjct: 512 STLNLHGITSTADRDGIITDVNDAFCTISGYSREELMGQTYRLVDSHTHSTDFWQSMWND 571 Query: 265 EESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----G 318 + + + + + + Y N+S + Y+S + + + Sbjct: 572 IANGISWRGEICNKAKDGSLYWVDTTIAPFNNSSGQVERYISIQVDITANKNQQANLIIA 631 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 +N D + + ++ + + + +++ A + + Sbjct: 632 KNQLVRAADVAELGIWTWNIPEDTLSFDDRMNDIYGVP--EELHNAPIPLAYWYSLLHQE 689 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + + N + + ++ + + GI + Sbjct: 690 DVPNVKSAIKAALENKSVYRQVFRIVVKN--QVHFIQSTGTVEQDENGKALLMMGINRDI 747 Query: 438 VDTRINKRKMEIEVM 452 R + ++ Sbjct: 748 TQQREAENILKTARE 762 Score = 58.1 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 27/251 (10%), Positives = 74/251 (29%), Gaps = 12/251 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++ G +++G V S D + + + +W G+ Sbjct: 524 DRDGIITDVNDAFCTISGYSREELMGQTYRLVDSHTHSTDFWQSMWNDIANGISWRGEIC 583 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ +V +A P + + + + + + + +A + Sbjct: 584 NKAKDGSLYWVDTTIA--PFNNSSGQVERYISIQV--DITANKNQQANLIIAKNQLVRAA 639 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 ++ + D S + ++ + A+ +L E P + S Sbjct: 640 DVAELGIWTWNIPEDTLSFDDRMNDIYGVPEELHNAPIPLAYWYSLLHQEDVPNVKSAIK 699 Query: 268 SLPEQEDFHTINLNQYTKKQY------FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E + + K Q Q+ + ++ + + + Sbjct: 700 AALENKSVYRQVFRIVVKNQVHFIQSTGTVEQDENGKALLMMGINRDITQQREAENILKT 759 Query: 322 TPETVDKCPIP 332 E +K Sbjct: 760 AREAAEKANKA 770 >gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5] Length = 589 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL +IL + +DG+ IN +G IL TN + + + N Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G + L + + D++E + Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++ESG LH+E ++++E + + I A EK I Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIA 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + D ++Q+ N++ NA+ T +GG + IS + + + ++D+G Sbjct: 464 LHHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 802 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 168/390 (43%), Gaps = 20/390 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497 + + + Q ++ E + IIN + G IL N A ++ +GY ++ K Sbjct: 285 ERKKYDLAIRESEEQYRALFENNHSVMLIINPQTGKILDANTAATEFYGYSHTELQAKNI 344 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 ++ + I K + + + + Sbjct: 345 FDI----NVLSRAEVISNMSEAHKADRTNFIFQHRCKNGDIKDVEVFSGPFNHNGKTLLI 400 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +HDI++ + + +LS AK+ A + + K +FLA +SHEIRTPL ++G +V+ + + Sbjct: 401 SIIHDITKRLKNEKELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQVMNSAKL 460 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 N + + +S +L +++D+LD+SK+E G ++L + SL++ + E+I+L Sbjct: 461 ----NQEHRNCISVALQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLEESINLF 516 Query: 676 QLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730 + A +K + + S D ++QI N++ N+I FT G +I + Sbjct: 517 KPQAEKKEVDLSYSIFPETESYYFGDEGRIRQILFNLIGNSIKFTDHG-EIRVEARAGPG 575 Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + V DTG+G+ E+ F Q+ S R +G GLGL + K +++ Sbjct: 576 TCQDKNNLHFTVSDTGIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRLIELME 635 Query: 790 GKFYIFSTPAKGTL--IEIIFPLYDTSHPH 817 G I S+ GT I + D P+ Sbjct: 636 GSIKIESSLHHGTTISFTISLRIADPPEPN 665 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 61/177 (34%), Gaps = 16/177 (9%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L+A + I ++ +G ++ NR V+ + E + K +L + H + Sbjct: 10 LLDANTQSILLLENDGTVIHVNRIVADILKTTPESLTGKNIFDYLPPELAAYRKHMFDNV 69 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAK 575 + + T+E +++ DI+E ++ +L+H+K Sbjct: 70 VKSGEPIKFQD-----TREGRIILHSHYPIIENDKVSRVAIYAEDITEVINKERELAHSK 124 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR-----FGPLGNPRYIEYA 627 + F + ++ + +I E++ + F L + E Sbjct: 125 HLQSVLYEIICQF--NSAKDLNELMQSIH---EIMLKELKAKNFFIALIDQEQEELV 176 >gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824] gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium acetobutylicum ATCC 824] gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium acetobutylicum EA 2018] Length = 566 Score = 344 bits (883), Expect = 3e-92, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 163/365 (44%), Gaps = 30/365 (8%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R+ + +L +IL + G+ ++R+ I+ N K+FG I + Sbjct: 230 RESVEKQKKLEAILVSMDSGVIAVDRKHKIIMINPYAEKIFGIDKNIIGQSLMDCIRNYE 289 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + N + E+ T + I + DI++ Sbjct: 290 FEDIFNKRAEGYAEIKTSWPKERNLRIKTAD---------IINGYECIGTVAVVQDITDI 340 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 ++ + + ++ F+A VSHE++TPLT+I GF+E ++ + + Sbjct: 341 RKLE--------------NMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDDNQKG 382 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 E+ + ID + + +++D+L +S IE + E ++E + L++ A+ K I Sbjct: 383 EFLDIIDDEVDRLTRLISDILTLSDIEIRPF-MKKEEFDVNEIIKAVCGLLEKSASRKNI 441 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 ++ F ++P ++ D KQ+ +N++ NAI +T +GG++ + +T ++ VI+ V+D Sbjct: 442 SLKV-FGEDVPNLIGDNDKFKQMIINLVDNAIKYTEAGGEVSVYKKYTKDD-VIISVKDN 499 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 GVG+ L++ + F ++ ++ GTGLGL + K +V G I S GT Sbjct: 500 GVGIPKEHLQRIFERFYRVDKARSRANGGTGLGLAIVKHIVLNFNGSINIESKLGVGTEF 559 Query: 805 EIIFP 809 I P Sbjct: 560 IITIP 564 >gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus saanensis SP1PR4] Length = 791 Score = 344 bits (883), Expect = 4e-92, Method: Composition-based stats. Identities = 106/642 (16%), Positives = 201/642 (31%), Gaps = 45/642 (7%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSS 242 +RV + S + E V + + V Sbjct: 169 ESRVRQRVESALTVERNFVSAVLETAGALVVVMDTAGRVVRFNRACEAISGFATREIVGR 228 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLP--EQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 ++ T S P ++ + + L + E Sbjct: 229 YLWETLIPEEDRAEANRAFETIRSGSFPVSFEDRWKVRGGGLRRIQWTATALMDAQNELN 288 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSH-GNLFYANPSFLLLTKYK 355 ++ +L ++ + + F ++ G L N Y Sbjct: 289 FVIATGIDVTLQRVAEDTLRQSEAQYRQLVEGSLGVVFTHTPKGRLISLNTYGAESLGYG 348 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + + D + + R A + N E Sbjct: 349 IEEMLGRS-------LTDFMPDEDFVAFDAYLEKMRKTGEAQGTFCLLHRNGERRTLAYR 401 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + G + + + + +Q SIL++ DGI + +G+ Sbjct: 402 NRLIAP--EGRDRFVLGFGVDITEKVRAEESLSALTLQSNSILDSVGDGIFATSLDGVAT 459 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKITL 530 N A + + GY +IL + + L + + L Sbjct: 460 VVNPAAASMLGYGTHEILGRKISDLLRLTRADGTEYADDESPIERSLHQREAVRASTDLF 519 Query: 531 GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K+ + + + + D +E + K + Sbjct: 520 WR-KDGSSFPVEYVACPIVKDGRATGIVVAFTDTTERR--------------ALDKMKDE 564 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F++ VSHE+RTPLT++ +I + + + + ++ +VND+L++ Sbjct: 565 FISTVSHELRTPLTSMRASLGLIASGALASRP-EKQKQMLEIAIGNTERLVSLVNDILEL 623 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 +I SGK LH S D+ A L+ A + I + D + Q Sbjct: 624 ERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKF--EIEARGVNVWGDPDRILQT 681 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 N+LSNAI F+P GG+I + + S +E + V D G G+ N +LE + F Q+ S Sbjct: 682 ITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDASD 741 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + +++V + G + S +G+ P Sbjct: 742 SRAMGGTGLGLAICRSIVSQHGGHIWAESKYGRGSTFFFTLP 783 Score = 107 bits (268), Expect = 7e-21, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 91/297 (30%), Gaps = 9/297 (3%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 + Q L+ ++ R + + N ++ V Sbjct: 142 EATALRILSTQVMTRLELQARVRLMDNESRVRQRVESALTVERNFVSAVLETAGALVVVM 201 Query: 337 SH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G + N + ++ + + + + + + P+ A + RS ++ Sbjct: 202 DTAGRVVRFNRACEAISGFATREIVGRYLWETLI---PEEDRAEANRAFETIRSGSFPVS 258 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R + + + + E + R+ + + Q Sbjct: 259 FEDR---WKVRGGGLRRIQWTATALMDAQNELNFVIATGIDVTLQRVAEDTLRQSEAQYR 315 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++E + + +G ++S N ++ GY +E++L + T F+ + YL + Sbjct: 316 QLVEGSLGVVFTHTPKGRLISLNTYGAESLGYGIEEMLGRSLTDFMPDEDFVAFDAYLEK 375 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKL 571 + Q L E + L+ R + + L DI+E + + L Sbjct: 376 MRKTGEAQG-TFCLLHRNGERRTLAYRNRLIAPEGRDRFVLGFGVDITEKVRAEESL 431 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 37/386 (9%), Positives = 90/386 (23%), Gaps = 27/386 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147 +D G + + G +++G L + + + ++ + Sbjct: 201 MDTAGRVVRFNRACEAISGFATREIVGRYLWETLIPEEDRAEANRAFETIRSGSFPVSFE 260 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W + G L I A + E + GI + ++ + ++ L Sbjct: 261 DRWKVRGGGLR-RIQWTATALMDAQNELNFVIATGI--DVTLQRVAEDTLRQSEAQYRQL 317 Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E G K + S + ++ + D+ L Sbjct: 318 VEGSLGVVFTHTPKGRLISLNTYGAESLGYGIEEMLGRSLTDFMPDEDFVAFDAYLEKMR 377 Query: 266 ESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEY---LSHRNHPSLSAYFDEGENL 321 ++ + N + T + ++ F + Sbjct: 378 KTGEAQGTFCLLHRNGERRTLAYRNRLIAPEGRDRFVLGFGVDITEKVRAEESLSALTLQ 437 Query: 322 TPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK------ 374 + +D F S + NP+ + Y + + + L Sbjct: 438 SNSILDSVGDGIFATSLDGVATVVNPAAASMLGYGTHEILGRKISDLLRLTRADGTEYAD 497 Query: 375 ----------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + +R D + I + + + + Sbjct: 498 DESPIERSLHQREAVRASTDLFWRKDGSSFPVEYVACPIVKDGRATGIVVAFTDTTERRA 557 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIE 450 + M I + R M Sbjct: 558 LDKMKDEFISTVSHELRTPLTSMRAS 583 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 61/182 (33%), Gaps = 7/182 (3%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + A+ + + + ++ E + + + +E + ++LE + Sbjct: 140 DAEATALRILSTQVMTRLELQARVRLMDNESRVRQRVESALTVERNFVSAVLETAGALVV 199 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTL 525 +++ G ++ NRA + G+ +I+ + + + + N I S + Sbjct: 200 VMDTAGRVVRFNRACEAISGFATREIVGRYLWETLIPEEDRAEANRAFETIRSGSFPVSF 259 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E + L ++ L + T D++ + ++ L ++ + Sbjct: 260 ED--RWKVRGGGLRRIQWTATALMDAQNELNFVIATGIDVTLQRVAEDTLRQSEAQYRQL 317 Query: 582 SS 583 Sbjct: 318 VE 319 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 83/306 (27%), Gaps = 17/306 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD------ILHIDPNNHIGDLLKR 139 + G ++ +G +++G ++ D+ + D + I L + Sbjct: 449 IFATSLDGVATVVNPAAASMLGYGTHEILGRKISDLLRLTRADGTEYADDESPIERSLHQ 508 Query: 140 QNTWYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + T W +G++ P++ A PI R GIV + RAL K Sbjct: 509 REAVRASTDLFWRKDGSSF--PVEYVACPI------VKDGRATGIVVAFTDTTERRALDK 560 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 D+ S + + + + + + + + ++ + + L + Sbjct: 561 MKDEFISTVSHELRTPLTSMRASLGLIASGALASRPEKQKQMLEIAIGNTERLVSLVNDI 620 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--NHPSLSAYFD 316 L + + + FE + Sbjct: 621 LELERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKFEIEARGVNVWGDPDRILQ 680 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 NL + P + + + + + + + + S Sbjct: 681 TITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDAS 740 Query: 377 DNNAIK 382 D+ A+ Sbjct: 741 DSRAMG 746 >gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM 8797] Length = 1780 Score = 344 bits (883), Expect = 4e-92, Method: Composition-based stats. Identities = 104/520 (20%), Positives = 213/520 (40%), Gaps = 26/520 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 + E + V+ + + +P++ T + Sbjct: 1123 DISLRKQQEEALRDSEGRSKALVEASAHMVWTMTPDARTVEDSPTWREFTGQTYEE---- 1178 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 D+ + + E + + N Sbjct: 1179 --WKDKGWIDGIHPDDREQTLRNWQTAFESVTPLDCEYRLCNREGE-WCWTSVRAVPQIN 1235 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + G+ + + ++++E +L L+A G+A + + + Sbjct: 1236 SEGTVLRWVGMNLDITRQKHLQQEVEANEKRLFMALKAA--GMAAWEWQPHASFWSNELY 1293 Query: 483 KLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +L G P + + + + E + + ++I + ++ L Sbjct: 1294 ELLGIPNTTSASPETLFSCVYKEDLPGLIKAWDEAVQGEKE--YDQIFRIVRPDGEIRWL 1351 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + + D ++ ++ + L ++K A++ + KS FLA +SHEIR Sbjct: 1352 AGVGEIVRDPQGNVTQIFGLNWDFTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIR 1411 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+TA++G+++++ G EY I R+GN +L+I+ND+LD+SKIE+GK+ + Sbjct: 1412 TPMTAVLGYTDLLI----GMEQEQEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEI 1467 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 E SL+E +++ S++++ A EK + F +++P I D + ++QI LN++SNAI Sbjct: 1468 SQESFSLNEMLADLQSMMRVRAEEKNLEFGIEFISDLPERIETDPKRLRQILLNLISNAI 1527 Query: 717 HFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT +G +++I+ + V+ V DTG+G+T + + + F Q S GT Sbjct: 1528 KFTETGSVKVVINFLREKADAVLKFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGT 1587 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYD 812 GLGL +++ + G + S P +G+ I P+ + Sbjct: 1588 GLGLAISQRLAGMLNGNISVSSKPGEGSTFSCTINLPVRE 1627 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 6/161 (3%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLE 502 + ++ EV + +IL + D I + G I+ N A + FGY ++++ K + L Sbjct: 1001 QDQLYEEVARKNAILSSAIDCIITTDAAGNIVDFNPAAERTFGYTAQEVIGKTLCDLLLL 1060 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSC---YSLT 557 + + L + L + + ++ + + I ++L Sbjct: 1061 EEYHERYHTALEQFLKTGESDLIGRHIELPVMHQDGSHFPVELAISVTHLEDGHPFFTLC 1120 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + DIS KQ++ L ++ ++ + + ++ + RT Sbjct: 1121 LRDISLRKQQEEALRDSEGRSKALVEASAHMVWTMTPDART 1161 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 43/380 (11%), Positives = 94/380 (24%), Gaps = 28/380 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNT-WYG 145 DA G + + + +T G A ++IG LCD + + H + + LK + G Sbjct: 1025 TDAAGNIVDFNPAAERTFGYTAQEVIGKTLCDLLLLEEYHERYHTALEQFLKTGESDLIG 1084 Query: 146 KTTLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLD 201 + P+ +G+ + P++LA + + F + + + + Sbjct: 1085 RHIELPVMHQDGS--HFPVELAISVTHLEDGH----PFFTLCLRDISLRKQQEEALRDSE 1138 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + L E + + D + Sbjct: 1139 GRSKALVEASAHMVWTMTPDARTVEDSPTWREFTGQTYEEWKDKGWIDGIHPDDREQTLR 1198 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY------LSHRNHPSLSA 313 T+ ES P ++ N + + E L L Sbjct: 1199 NWQTAFESVTPLDCEYRLCNREGEWCWTSVRAVPQINSEGTVLRWVGMNLDITRQKHLQQ 1258 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E + + + + F++N L + S + Sbjct: 1259 EVEANEKRLFMALKAAGMAAWEWQPHASFWSNE-LYELLGIPNTTSASPETLFSCVYKED 1317 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 A + + I I + + + G+ Sbjct: 1318 LPGLIKAWDEAVQGEKEYDQI------FRIVRPDGEIRWLAGVGEIVRDPQGNVTQIFGL 1371 Query: 434 EPEDVDTRINKRKMEIEVMQ 453 + R + + Q Sbjct: 1372 NWDFTQEREGEEALRRSEKQ 1391 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 60/252 (23%), Gaps = 10/252 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144 W + E S + G + D + + Sbjct: 1152 VWTMTPDARTVEDSPTWREFTGQTYEEWKDKGWIDGIHPDDREQTLRNWQTAFESVTPLD 1211 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L EG + + A+P + R G+ + + +K+ Sbjct: 1212 CEYRLCNREGE--WCWTSVRAVPQINSEGTV--LRWVGMNLDITRQKHLQQEVEANEKRL 1267 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----KDDVLKTEKYP 260 + G ++ E + + F L + N S+ E +D + + Sbjct: 1268 F-MALKAAGMAAWEWQPHASFWSNELYELLGIPNTTSASPETLFSCVYKEDLPGLIKAWD 1326 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E + + +++ + + +E Sbjct: 1327 EAVQGEKEYDQIFRIVRPDGEIRWLAGVGEIVRDPQGNVTQIFGLNWDFTQEREGEEALR 1386 Query: 321 LTPETVDKCPIP 332 + + + + Sbjct: 1387 RSEKQAKQANVA 1398 >gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451] Length = 1586 Score = 344 bits (883), Expect = 4e-92, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 24/386 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NT 505 E EV++ ++LE++ + I++ GII N K+FGY +++ P + Sbjct: 706 EKEVLRFKALLESSPEATLIVDPNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHDLES 765 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563 + E+ + ++I + +E + I + +++ +I++ Sbjct: 766 ARAKHAQWNELRPGN-----QRIEIAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITD 820 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + L A AE+ + KS FLA SHEIRTPL AI+G + ++ ++ Sbjct: 821 RLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQ 876 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I SG +L IVND+LD+SKIE+ +M L P+ L E + E S+ A K Sbjct: 877 HRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKN 936 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSN 734 + + ++P ++AD ++QI N+LSNA+ FT G I + Sbjct: 937 LDFKLEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALRAEIIDKFIWKGAEK 995 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V + DTG+G++ ++ KPF Q S R GTGLGL + + GK + Sbjct: 996 NIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLSGLMEGKIGV 1055 Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820 S +G+ PL S D I Sbjct: 1056 ESREGQGSTFWTEMPLQTLSD-EDII 1080 Score = 39.6 bits (91), Expect = 2.3, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 2/141 (1%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G GFG + RV D A ++ + + + + +++ I Sbjct: 93 RDIEREFPGALGFGFIR--RVPVDKEADFIVAARRDDFPNFTIRTLTPHDGDRFIIQYIY 150 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P+L+ E+ P LT+ + + L Sbjct: 151 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADSKPRRGVLILLPVYPS 210 Query: 289 FGTLQNNSKESFEYLSHRNHP 309 L + +L P Sbjct: 211 RMELNTPDEREKYFLGWAYAP 231 Score = 38.9 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 12/167 (7%), Positives = 44/167 (26%), Gaps = 16/167 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144 +D +G +K ++EE K G ++ G + + + + W Sbjct: 726 VDPNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHD-------LESARAKHAQWNELRP 778 Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + P+++++ + + + K+ Sbjct: 779 GNQRIEIAVRSDETEFPVEISSSSVQMDDGLLISVS----IRNITDRLAFEQTLKQALHD 834 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + K + + + ++ + +++ Sbjct: 835 AEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVD 881 >gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase [Acaryochloris marina MBIC11017] Length = 927 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 125/667 (18%), Positives = 234/667 (35%), Gaps = 53/667 (7%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + + F GF + VDN + L + + Sbjct: 9 LLGVSGALLLFGGF-VAKSLSVDNQQHQQYRTLMAQQLDKDATVNQSVLKARYALLTSY- 66 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 P +R ++ L E + ++ L E + F + K Sbjct: 67 ---DPLVRAISEQLELQEDLKQVPGFIGNQQSLLSQLSE----NNQVFTQKEELVESFKS 119 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 L+N+ E + S + +D + + Sbjct: 120 KNAILKNSLTYLPELVKEVRTGSAKGLSTDEAIQLESLLDNVLLYSLSSDEDLVPQIEAQ 179 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L KS I++A + ++ K + + ++ + + A Sbjct: 180 ITQLEGKKSSQGIQLALAHTRMILEYKPQVDTLTRDILKLPTAQAISTLEAAYTNQYDAA 239 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + ++ ++ IL + +D Sbjct: 240 TQTADLFRLLSFGCLLVLVSGGAYLVV----------QQQRRSNERVSGILSSLTDAFVA 289 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +N + I N +++ + +L + F + + L + + E Sbjct: 290 LNPQWQITYINDKAAEILQADSQQLLNQDFWQSFPDVLGADHLSDYRQALKEKQKTSFEV 349 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE------ 581 + L I + SL + D++ K+ + L + E Sbjct: 350 FYPP-----SQMWLEIRVYP--SVDGLSLFLQDVTIRKEAEASLKQMNQELETRVKARTA 402 Query: 582 -------------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + KS+FLA +SHE+RTPL AIIG+SE + + +G Sbjct: 403 QLASSMEAAEEAREKAEEANKSKSEFLANMSHELRTPLNAIIGYSE-MLEEDAEDMGQDD 461 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++ I S +L+++N +LD+SK+E+G+M L+ E + V + +Q A+++ Sbjct: 462 FVPDLQKISGSAKHLLELINAVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQ 521 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 +I NI + AD V+Q N+LSNA FT SG ++ ++ + + EEV+ ++ Sbjct: 522 SNMISLHCPENIGTLYADQTKVRQSLYNLLSNACKFTESG-EVSLTISEDAGEEVVFSIK 580 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+GMT +LEK K F Q S + GTGLGL + K ++ G + S GT Sbjct: 581 DTGIGMTPEQLEKVFKAFTQADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGT 640 Query: 803 LIEIIFP 809 I P Sbjct: 641 EFTIHLP 647 >gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea psychrophila LSv54] gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid family) [Desulfotalea psychrophila LSv54] Length = 1041 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 100/389 (25%), Positives = 181/389 (46%), Gaps = 9/389 (2%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 K++ +IL+ S+ I I+ + +LS N + F Y E+I+ + Sbjct: 295 RKQVASRTTKLQASEAWTVAILDTASNPIITIDEDETVLSFNLGAERSFAYSAEEIIGQK 354 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSS 552 + L + + T + D ++ + K + + + + ++ Sbjct: 355 VKILLPDLYEKYEDEFATSFFAKDDAHLIDMDREIDARRKNGTIFPIHLSVGEMIVSGKR 414 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + + D+S KQ +L A+ AE K+ FLA +SHEIRTP+ AI+GF ++ Sbjct: 415 MFVIILVDLSVQKQRNLELELARDAAEAAMEAKAIFLANMSHEIRTPMNAILGFLAIVLE 474 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 P ++ S +L I+ND+LD+SK +SG+M L F L + +A+ Sbjct: 475 SSSLPAD---LRKHIVTAHGSAESLLVIINDVLDVSKFDSGRMELVFSVFHLPRTIGKAL 531 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730 + + A EK + I ++ ++P L D ++Q+ +N+++NAI FT G I + T Sbjct: 532 QTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQVIINLVANAIKFTEEGSITIEVKGT 591 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++ ++ V DTG+G+ ++ + +PF Q +S GTGLGL + K +VD G Sbjct: 592 SGEDDLLLFTVVDTGIGIRPEQVARIFEPFTQADDSSTRNIGGTGLGLAICKEIVDLMGG 651 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 + ++ S KG+ + PL DC Sbjct: 652 RIWVESEKGKGSSFNFMVPLPRAECIKDC 680 >gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1124 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 116/661 (17%), Positives = 214/661 (32%), Gaps = 50/661 (7%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 ++ + + RA + + E + E D S + + Sbjct: 191 AVIREQHREINARARAQEAANHQLTMAEQLASVGNWRIELGDGQPVWSASLYAIAGRDPA 250 Query: 242 SLTEY------YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + + H DD + E + + E + G + Sbjct: 251 TPPPHLDVFSEIYHPDDRARLEAIVADAVARRTRFDFEARLLRPDGELRDVVVRGMARGE 310 Query: 296 SKESF---EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLL 350 + + E + P+ + G Y N F Sbjct: 311 GASAGLFGVLIDVTERRRAEDEVRRSELRYRGLAEALPLLVWTMRVGDGRATYVNAQFQA 370 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-- 408 + L+ + T + R I+ + Sbjct: 371 YYGPIGPE------RAERLVRNHPEDAAAMEAAWIRAVETGTGYSGQWR---IRRHDGVY 421 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 ++ IP G + D + +E L L+A G Sbjct: 422 RWHKLSLIPIRLDPADGAVAEWLGTALDVDDIVTARLAVEEARGLLDIALDAAEAGTWDW 481 Query: 469 NREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + + + +++ G P I +T ++ + + + + + Sbjct: 482 DMRTGLAVLSPESARMHGLPDTGGAHTISASAWTALIDPDDVADVWTEIRRAVESGTPYA 541 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KKI 577 E + +L DI+E K + L A + Sbjct: 542 AEFRVGARWLYARGRTLS---GADGQPQRMVALHLDITERKAVEAALRTATRDAEAARTE 598 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ + + N I SG + Sbjct: 599 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDG--DAIQNEDRRR-LELIQSSGAAL 655 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L +VND+LD SKIE+G++ L L V +S+V+ A + I +P Sbjct: 656 LTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSGLAIEARIDPALPTF 715 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---------EVILRVRDTGVG 747 ++ D ++Q+ LN+L+NA+ FTP G + + V V DTG+G Sbjct: 716 VVGDAGRLRQVLLNLLNNAVKFTPEGS-VTVIVEREDAGGAPDGRPGDTVRFSVVDTGIG 774 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + + ++ K F Q+ S R GTGLGL +++ +V G+ + S G+ Sbjct: 775 IAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGVESREGAGSTFWFR 834 Query: 808 F 808 Sbjct: 835 L 835 Score = 55.0 bits (131), Expect = 6e-05, Method: Composition-based stats. Identities = 25/320 (7%), Positives = 70/320 (21%), Gaps = 15/320 (4%) Query: 78 PIPRTVRFTWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-D 135 + W + G ++ + G + + + Sbjct: 344 AEALPL-LVWTMRVGDGRATYVNAQFQAYYGPIGPERAERLVR--NHPEDAAAMEAAWIR 400 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPR 194 ++ + G+ + +G +Y L+ +PI + + G Sbjct: 401 AVETGTGYSGQWRIRRHDG--VYRWHKLSLIPIRLDPADGAVAEWLGTALDVDDIVTARL 458 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 A+ + L + G + + + + T + ++ Sbjct: 459 AVEEARGLLDIALDAAEAGTWDWDMRTGLAVLSPESARMHGLPDTGGAHTISASAWTALI 518 Query: 255 KTEKYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + + TL + ++ + Sbjct: 519 DPDDVADVWTEIRRAVESGTPYAAEFRVGARWLYARGRTLSGADGQPQRMVALHLDITER 578 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + A FL ++ + G + LL Sbjct: 579 KAVEAALRTATRDAEAA-----RTEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLD 633 Query: 373 PKLSDNNAIKPVMLYRSDRT 392 N + + L +S Sbjct: 634 GDAIQNEDRRRLELIQSSGA 653 >gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913] gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913] Length = 1101 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 110/514 (21%), Positives = 205/514 (39%), Gaps = 25/514 (4%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 S + E V + + N Y +P +L Y D + Sbjct: 287 ESSREAIKQSEARYELAVKGSNDGIWDWDIVTNEVYFSPRISVLLGYDENDKNALPHCAD 346 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L D+ + + I + + T N+ + Sbjct: 347 ALY-KLLHPDDITKHKKQIANHLISNIPFNYDYRLKTKSGA-YRYFTVKGMALRNEHNKA 404 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINR--EGI-ILSTNRAV 481 + G + + + +++ ++ Q L +E+ + GI+I + +G ++ N Sbjct: 405 IRMAGSVTDITEQKRSQKALKQAKEQNDLLAQAIESCNVGISIADASVQGFPLVFLNSEF 464 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 K+ GY E++L ++ NT +T + Q + L K+ Sbjct: 465 EKITGYSKEEMLGINCSLLQGPNTDKNAIDIITNAIKTLKTQRI--EILNYKKDGTEFWN 522 Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + I + Y DI+E K L AK AE+ + KS+FLA +SHEIR Sbjct: 523 SLQISPVFNEQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHEIR 582 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ ++G +I + N + + S N +L+I+ND+LD SK+++GK+ L Sbjct: 583 TPMNGVLGMLNLILDSSL----NEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLEL 638 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716 +L + + I + ++A+ K I + + ++ D +KQI N+++NA+ Sbjct: 639 EELEFNLCNMLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNAL 698 Query: 717 HFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G ++ + T N ++ +V D+G+G++ + K K F Q+ +S + Sbjct: 699 KFTHKG-EVQVIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYG 757 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GTGLGL + K + G + S KG+ Sbjct: 758 GTGLGLAIVKKLCHLMEGDIQVQSKENKGSNFSF 791 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 7/133 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPI 152 L ++ E K G +M+G+ C + + D N + I + +K T + + Sbjct: 457 LVFLNSEFEKITGYSKEEMLGIN-CSLLQGPNTDKNAIDIITNAIKTLKTQRIEILNYKK 515 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +GT + + ++ P+++ ++ + + GI L + K Sbjct: 516 DGTEFWNSLQIS--PVFNEQQQLTAY--VGIQQDITEQKAANQLLIEAKAAAEQANIAKS 571 Query: 213 GHSSVEKEKYDIF 225 + + Sbjct: 572 EFLAAMSHEIRTP 584 >gi|304408466|ref|ZP_07390110.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304342551|gb|EFM08401.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 623 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 113/640 (17%), Positives = 222/640 (34%), Gaps = 32/640 (5%) Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 G ++ + + L + + + + ++F P Sbjct: 9 GMLSVIVLAIIASLPRRKRLLMHASHRMAGIGSWSYNIEKNQLFGTELFFGLIGLPVPPR 68 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 H DD + + T+ E S ++ + Sbjct: 69 ARMKLEQFLELVHPDDRV-RIEQHRDTNHEGSFSIDFRMIRMDGKVRWMHAQMQAT-SPH 126 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYK 355 + +L + +D P ++ + N +F L Y Sbjct: 127 RCVGILQDRTAARNLETEARLAHHHLYSFIDHHLDPIVIWRADGIVMSVNRAFTSLLGYS 186 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + IE G T P + ++T + ++ + + Sbjct: 187 TYE-IEGKGIADTPFI-PDEHREQMDRYCRQTIENKTAVTFETE--RLKKDGGKLHIL-L 241 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 I + + RK++ +L S ++ D IA NR+G I Sbjct: 242 SITPLVGADGRMDSWISILRDCTEQLAANRKLKEAQEELESFVDHNIDAIAFFNRDGKIR 301 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A ++FG+ ++++ P + N + + + T G K+ Sbjct: 302 KMNTAFQRMFGWTLDELQAAPVQEYPFSNGRTEAELRERLEEIMSGKVTKNAEFQGRRKD 361 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +L + + P + ++ D+SE KQ ++ L + S A V+HE Sbjct: 362 GTVLPVMVSSTPFPDRNGLAVMFKDMSELKQTRDMLGR-----SEMLSVLGQLAAGVAHE 416 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 I+ PLT++ GF+ +++ L N + + + + IVN++L +SK + Sbjct: 417 IKNPLTSLKGFARLLE----PSLQNKEQR-FIGIMKEELDRIELIVNEMLVLSKPQ---- 467 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + FE + E ++ I L+ A K I I+ F +P I + R +KQ+ +N+L NA Sbjct: 468 VIMFEERDMSELLNYVIELLGTQAIMKSIEIKKEFEP-VPLIACEDRQLKQVFVNLLKNA 526 Query: 716 IHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I P G I + + + V D G G+ L + +PF + + Sbjct: 527 IEAMPGDGHGQIRVSLQQAGHSDSIRIEVSDQGQGIAPDRLARLTEPFYTT------KEK 580 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 GTGLGL + ++V+ + G + S GT + + P+ Sbjct: 581 GTGLGLMMTASIVERHGGTIHFASELGVGTTVTVTLPIQQ 620 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 21/260 (8%), Positives = 62/260 (23%), Gaps = 21/260 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-----IGDLLKRQ 140 W A G + ++ +G +++ G + D D + ++ + Sbjct: 165 IWR--ADGIVMSVNRAFTSLLGYSTYEIEGKGIAD--TPFIPDEHREQMDRYCRQTIENK 220 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +T +G L+ I L+ P+ + I+ K Sbjct: 221 TAVTFETERLKKDGGKLH--ILLSITPLVGADGRMD--SWISILRDCTEQLAANRKLKEA 276 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE 257 ++ + + I + + ++ + Y + + E Sbjct: 277 QEELESFVDHNIDAIAFFNRDGKIRKMNTAFQRMFGWTLDELQAAPVQEYPFSNGRTEAE 336 Query: 258 KYPLLT---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L S + + + + + + + + Sbjct: 337 LRERLEEIMSGKVTKNAEFQGRRKDGTVLPVMVSSTPFPDRNGLAVMFKDMSELKQTRDM 396 Query: 315 FDEGENLTPETVDKCPIPFF 334 G + + + Sbjct: 397 L--GRSEMLSVLGQLAAGVA 414 >gi|170079099|ref|YP_001735737.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169886768|gb|ACB00482.1| two-component hybrid sensor and regulator (His Kinase A domain protein) [Synechococcus sp. PCC 7002] Length = 1427 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 122/788 (15%), Positives = 262/788 (33%), Gaps = 60/788 (7%) Query: 66 NYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 L E F+ F ++ G + + + G ++ L D+ Sbjct: 655 MELRQEQDFLETLFDLTPALFM-VLNREGRIIRFNPACEQLTGYQFTEVAHQYLWDLLLW 713 Query: 125 LHIDPNN---HIGDLLKRQNTWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREF--SG 177 D LL+++ + G +L + + + Sbjct: 714 DRYDVAEIVQEFQRLLQQKKPRTYEVDWRAKSGKVHHLRWSHGV----LLDKQGNVHYVI 769 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 G + + + L + L+ + + + + + + + Sbjct: 770 ATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENIEQNLRRQLAAVDAAVDAIAILQR 829 Query: 238 NKVSSLTEYYAHKDD-------------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + S+ + D + E+ LP + Sbjct: 830 EEFISVNPAFLELFDYPHRLSLTGHSWKEVLFAPSEQKRLEKDILPHLNRHKSWQGEAIA 889 Query: 285 KKQYFGTLQNNSKESFEYLS--------HRNHPSLSAYFDEGENLTPETVDKCPIPF--F 334 ++Q + + E E L PIP + Sbjct: 890 QRQNGQIFTQEISLTITSDGDYICVCRDITARNRAALKIRETEALLRSQYRNFPIPTYTW 949 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM--LYRSDRT 392 + GN + L Y S +I G L L P + A + + R Sbjct: 950 QHRQGNFY--------LIDYNSAAEIANDGSLQDFLHCPSHAIYGADHAIHQNIRRCFDF 1001 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 L + + F+ + + + + +R ++ Sbjct: 1002 KTTFEEALQIPSPDDPEAFQRYFLATYIY---IQPDLVMVHTQDLTERKRAERDLQQSQT 1058 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNH 511 L +++ + I + +++G L N+A++ +G V +++ K Sbjct: 1059 FLRLVIDNNPNLIFVKDKDGRFLLVNQAMANFYGTTVNELVGKRECDLHPDSEEADCFIQ 1118 Query: 512 YLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 ++L +++ LG+T+ + + L + + +I++ ++ Sbjct: 1119 ADQQVLREQKIVVIDEAKATDFLGATRYFRTVKLPLQLPGDHPQYQVLGVASEITQQRRA 1178 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 K +L A + + K+ F+ SHE RTPLT I+G ++ I + L R +Y Sbjct: 1179 KRELEKALTQERELNHLKTRFIDTASHEFRTPLTVILGAAQ-ILSAYHDHLPEARRSQYL 1237 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-NEKRILI 686 N I+ S + +++DLL +S++E+GK+ + V + + I+ +++ + + Sbjct: 1238 NNIEDSVMRLRQLIDDLLTMSRLEAGKLGCQRQAVDIVTLCRDLIAELKIGIGKQHHFNL 1297 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T+ A P L D ++ I N+L NA ++ G + + ++ + L + D GV Sbjct: 1298 ETTGAIAAPLAL-DPNLLQHILNNLLGNACKYSAPGTTVTVQLGSSAEA-LTLTIIDQGV 1355 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + + F + S GTGLGL + K V + G+ + S +KG+ + Sbjct: 1356 GIPPEDQPHIFESFYRA--SNTQNIPGTGLGLNIVKEYVQLHGGQIELTSQLSKGSQFTV 1413 Query: 807 IFPLYDTS 814 PL + S Sbjct: 1414 TIPLTEDS 1421 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 45/419 (10%), Positives = 102/419 (24%), Gaps = 14/419 (3%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + L D++ + + + + Sbjct: 391 RLQNSAAQRPILLLTDDRQEDIQLAHQCIELGAQDYLLRSLCAGESQTEREILMRSVRYV 450 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A L+ L + + E+ I L + ++ Sbjct: 451 LETAGAKRYLQQRDQQLQSLSQRLKAEKTAKQAIAQQLKLTDGQMKALFEAITDIVFVIN 510 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + + N +D C F L + + + Sbjct: 511 PQTWKIKQVTAPQ-NNHCCGPLDLCQGTYQFLQAHQSRLTPYLHQAIAKGTTPDHEPLSG 569 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM---TFIPFE 419 P + ++ + +A T + L Sbjct: 570 ESVKYEYSLQPDPHLAPVWFVAKIVAINQQQVVWAAHDVTPFKLSQQKLITDQENLTTII 629 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + E ++ + ++ E L ++ + T ++NREG I+ N Sbjct: 630 QERTRELKALNATLNTEIQQRKLTEMELRQEQDFLETLFDLTPALFMVLNREGRIIRFNP 689 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 A +L GY ++ + L + + + +L +T K K Sbjct: 690 ACEQLTGYQFTEVAHQYLWDLLLWDRYDVAEIVQEFQRLLQQKKPRTY--EVDWRAKSGK 747 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + LR L T D+S+ + + L + E ++ L + Sbjct: 748 VHHLRWSHGVLLDKQGNVHYVIATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENI 806 >gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 803 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 106/498 (21%), Positives = 196/498 (39%), Gaps = 35/498 (7%) Query: 347 SFLLLTKYKSVDDIEIAGGLSTL-----------LDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L K + IE G L L + + + + Sbjct: 43 ALRRLLKNTHAELIEAESGNEALGLMLEHELALMLLDVDMPGMDGFEVSRMASGLDRTSN 102 Query: 396 ASARLHTI-------QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRK 446 L T + + A+ +I ++ + + ++ Sbjct: 103 VPIILITAAYKDYSHRIKGYQAGAIDYIEKPIDDRILNAKVAIFLNLYNAHRESEQLRQD 162 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN 504 + + +L LE ++G+ N + + + GY ++ + + + + Sbjct: 163 LTLNQERLELALEGANEGLWDWNILSNQVYYSPRWITMLGYATNEVNQDFSTWKTLIHPD 222 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMH 559 L + + TK+ + + Sbjct: 223 DFESALACLERHFTT-PEEPYRAEFRMRTKQGGWCWILARGKVVARTADGQPHRMVGAHQ 281 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DIS+ KQ + L AK AE+ + KS FLA +SHEIRTP+ I+G E++ N P Sbjct: 282 DISQRKQLEADLLAAKTEAEQANQAKSRFLANMSHEIRTPMNTILGMGEILLN---APNL 338 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 P+ Y + R+G+ +L ++ND+LD+SKIE+G+++L +L + + I++++ A Sbjct: 339 TPKQHRYLSISQRAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPMA 398 Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K + ++ +P + D + +QI LN+LSNA+ FT G I + + Sbjct: 399 RDKGLSMQCVIDPQLPTHVHGDPQRFRQIVLNLLSNALKFTDQGS-ITLHAKPIETGRLQ 457 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG+GM + K +PF Q + R GTGLGL + + +V G+ Y S Sbjct: 458 FTVSDTGIGMPEQVITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANSQV 517 Query: 799 AKGT--LIEIIFPLYDTS 814 +G+ + EI P ++ Sbjct: 518 GEGSQFIFEIELPAANSE 535 >gi|326797637|ref|YP_004315456.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] gi|326548401|gb|ADZ76786.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21] Length = 1203 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 161/777 (20%), Positives = 292/777 (37%), Gaps = 68/777 (8%) Query: 89 IDAHGYLKEISEELPKT-------------IGNYAFKMIGMRLCDV---SDILHIDPNNH 132 +D + E S E + + +A ++ G++ ++ + I Sbjct: 193 LDRTKRMLEKSNEAARIGQWDINFGENSIHLSKFAGEIFGLKENELSVNAFCGLIKEKER 252 Query: 133 IGDLLK------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 LL+ R + L I +P+Y + + G +G++ Sbjct: 253 FQYLLEKLKQSNRDQEGRMDEVFSILSSRRLEGWIRFIGIPLY-KGGQCIGA--YGLIQD 309 Query: 187 NRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLT 244 + L K + L G + +I + L + N+V +T Sbjct: 310 IHEQKNTECNLIKERQRLKYVLQGANLGTWEWNVQTDEILFNEQWAMLLGYELNEVQPIT 369 Query: 245 EY------YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 Y D K + E + + L + K Sbjct: 370 GSAFQRFIYPGDFDKAKNAMESYFSGETDIYQCEMRMIHKAGHTVWMLVQGKILSWDDKG 429 Query: 299 SFEY-----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + + L + L E+ + P F+ S FL Sbjct: 430 APLWMYGTHLENTKEKQLQENLRRSESYAHSLITSIPDSMFILSKDG------EFLDYKS 483 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 ++ + L + + + +S RT I +E Sbjct: 484 HEKDLYTKPNLFLGKNFKDIFPAKLGLLIEEKIEQSIRTDSLVEFTYSLILHEQEKYYRA 543 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-G 472 +PF E + +D I +R++ + SI++ + GIA++ + G Sbjct: 544 RVVPF-------EGDKIIVLCRDDTVNFIAERELRALNAKFKSIVDNSPIGIALVEYQTG 596 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 I N A+ GY +++LR F+ + L ++ EK L Sbjct: 597 IFQEVNPAIPMFTGYTRDELLRLSFSDITPRAYHEADKLQLKQLHKNGRFDNYEKEYL-- 654 Query: 533 TKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ K + + + S + DIS+ K+++ L AK+ AE ++ KS+FL Sbjct: 655 RKDGKRVWVSVTGVAFTDVSGEKKILTIVQDISQQKEQQRALKAAKEQAEIANNAKSEFL 714 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHE+RTPL AIIGF++++ + EY + +SG +LD++NDLLD+SK Sbjct: 715 ANMSHEMRTPLNAIIGFTDLLLKSPL----SEAQKEYMRAVFQSGQSLLDLINDLLDLSK 770 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708 IESGK++L FE V L + + + +++ AN+K + + +P +L+D + ++Q+ Sbjct: 771 IESGKLDLVFESVDLIKLAKQVVEILKYQANKKGLDFNLILSPELPPLVLSDGQRLRQVL 830 Query: 709 LNILSNAIHFTPSGGQ---IIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIP 764 N+LSNA+ FT G I + ++ E + V DTG+G+ EK + F Q Sbjct: 831 FNLLSNALKFTERGSVDLDIQVEQHLSAKEVIIRFSVTDTGIGIAEENREKIFEAFVQEN 890 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDC 819 +S R GTGLGL ++ ++ + + S G+ + L DT P + Sbjct: 891 SSIIKRFGGTGLGLTISNRILSLMGSQLKLRSETGTGSTFYFDLLLTLVDTDQPSEA 947 >gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC 19865] Length = 664 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 98/522 (18%), Positives = 203/522 (38%), Gaps = 42/522 (8%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPF----FVYSHGN-----LFYANPSFLLLTKYKSVDD 359 P+ A + E F V+ + N +F T + + Sbjct: 6 PAAIAEPFLDPAMYHEIFHNVDAGFCVIDMVFDGDKAVDYVIRSTNGAFERYTGLTNAVN 65 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + G L+ + I + ++ + Sbjct: 66 VSVRGMLAE-------HEQEWFDRYGHVARTGNRIHFEMQAKALRR--------WYSVDA 110 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 P+ + + + + +R++ + ++ + + +++ +G++ N Sbjct: 111 FRVGQPQQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 170 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A + FG + ++ L + S+ SL+ ++ L + + + Sbjct: 171 AYGEFFGIDISSGTVSAWSELLHPDDLSIFQ--FELAASLEEQRALHALVRARRHDGQWR 228 Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDF 588 + + + + + D++E ++ + A+ AE + K +F Sbjct: 229 WIEMAATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERTARNEAESMARFKDEF 288 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTPLT I+G+SE++ + G P Y + I S +++D+LD+S Sbjct: 289 LATLSHELRTPLTTILGWSELLLQRV--EEGQPTYKG-LSVIASSARAQKRLISDMLDLS 345 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 + GK+ L E + L E V EA++ +L A K ++ + +L D ++Q+ Sbjct: 346 SMLLGKVQLEVESLDLAEQVHEALTTQELAAEGKDQILEVHVPDTPCLVLGDATRLQQVL 405 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNAI FTP+ G+I ++ + +++ VRD+G G+ L F Q + Sbjct: 406 WNLLSNAIKFTPAHGRIDVTIE-RDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTT 464 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 + G GLGL + + +V+ + G+ S KG + P Sbjct: 465 RQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 506 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 48/462 (10%), Positives = 120/462 (25%), Gaps = 48/462 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 125 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGIDISSG 183 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q + +G + I++AA P YS + Sbjct: 184 TVSAWSELLHPDDLSIFQFELAASLEEQRALHALVRARRHDG--QWRWIEMAATPRYSAD 241 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 242 GRFIGLAGSSPDVTEQREIELAREQLLESERTARNEAESMARFKD-EFLATLSHELRTPL 300 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + +++ + + D ++ L + + Sbjct: 301 TTILGWSELLLQRVEEGQPTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 360 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + + L + + + + P+ Sbjct: 361 LAEQVHEALTTQELAAEGKDQILEVHVPDTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 419 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 420 GRIDVTIERDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 479 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 480 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIIEARALNGLR 539 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREG 472 + Q L +LE + +D +A+I+ G Sbjct: 540 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRG 581 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 13/192 (6%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + + L + E E D P+P + Sbjct: 98 QAKALRRWYSVDAFRVGQPQQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVW 157 Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 V G + + N ++ I+I+ G + D+ +I L S Sbjct: 158 VLDAQGVVRFVNSAYGEFFG------IDISSGTVSAWSELLHPDDLSIFQFELAASLEEQ 211 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIE 450 A A L + + + + + + G P+ + R + ++ Sbjct: 212 RALHA-LVRARRHDGQWRWIEMAATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLES 270 Query: 451 VMQLCSILEATS 462 + E+ + Sbjct: 271 ERTARNEAESMA 282 >gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 1199 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 101/486 (20%), Positives = 186/486 (38%), Gaps = 35/486 (7%) Query: 341 LFYANPSFLLLTKYKS---VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 L + + + + I +A + L + + + I Sbjct: 450 LLQTSQQVSRVLGVIAFVLLLAIALANYFANYLARVFVRLEENTRSLSQRIMAGDAIVWP 509 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLC 455 A +T + A + +++ R+ +R + Q+ Sbjct: 510 AASVR------EVEGLTANFQQMAVSLQHQSLELQSLNGELEQRVQERTSDLRNAEAQMR 563 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYL 513 +++ D I + + +G L N +LFG K + + Sbjct: 564 TLINLIPDIICLKDGKGRWLIANNFDLELFGLSGVAYQGKTDMELASFSPFYQNAFANCE 623 Query: 514 TEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568 L + + + ++ +I + + DI+ K + Sbjct: 624 RSDELAWQAGGLNRYEEIIPRPDGSSITFDVIKLPVFEPDGSRKALVVVGRDITARKLTE 683 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 L + K FLA +SHEIRTP+ +IG + +++ NP +Y Sbjct: 684 QALQD-------ATEAKMQFLANMSHEIRTPMNGVIGMTGLLQESGL----NPEQQQYVE 732 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I SG+L+L I+ND+LD SK+E+G++ L P + ++E I LV A K + + Sbjct: 733 VIRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLALER 792 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743 P + D+ ++QI LN+L NAI FT SG + + ++ ++ +VRD Sbjct: 793 HLELAQPCYLKGDVTRLRQILLNLLVNAIKFTESGS-VTLQARVEPGQDRRSMLLCQVRD 851 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ +LE PF Q S + GTGLGL +++ + G+ + S +GT Sbjct: 852 TGIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQGTT 911 Query: 804 IEIIFP 809 + P Sbjct: 912 FRLSIP 917 >gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 952 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 105/562 (18%), Positives = 209/562 (37%), Gaps = 24/562 (4%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSAYFDE 317 +++ + S + N Q ++ + + + Sbjct: 127 MMSERQDSTYIEFPVLAKNGRTVWIGQTVRLIETHGQIEELVAVARDISDRKLAEMELET 186 Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + V G + AN F + + D G ++ Sbjct: 187 TQTRLSTLITNLQSGVMVEDERGRVILANALFCDIFQLPLTPD--QLVGYDCTEARQQVK 244 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHT-IQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 A + R + A + I L + +IP + M Sbjct: 245 QLFAQPEQFISRMNELLTGRQACVGEEISMANGRILELDYIPI--FLDANQYMGHLWKYT 302 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + + + + I+ G+ ++ + II+ + ++ GY +++ K Sbjct: 303 DVTEKYMARELIRRSEEKYRGIMNNMELGLFEVDNDQIIVRSYERCCQMLGYSEAEMVGK 362 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 L + + + + + K+ + + + + Sbjct: 363 NAIDLLVPAEFVGIVERQQQERQQGIAGSY--ELQLTKKDGSRIWVLVSGVPIQDEHGTV 420 Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + +D++E KQ +++L+ AK+ AE+ + F A +SHEIRTPL AIIG S ++ Sbjct: 421 VGSMSIHYDMNERKQLEHELARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLLY 480 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + + + EY N + S + + +++DLLD++KIE+G + +H P L + Sbjct: 481 DTQ----PSAQQREYINILKTSADFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRST 536 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729 + ++ + I I I + D + QI +N++ NA FT G QII Sbjct: 537 QKVFEMKLQGRPISIDVLLDTRITNAFVGDDVMLNQIMMNLVGNAEKFTEEGQIQIIGKV 596 Query: 730 THTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + V DTGVG+ ++ K F Q+ NSQ + +GTGLGL + K +V+ Sbjct: 597 KKEEGDKTWIEFTVSDTGVGIPADKIGLVFKKFKQV-NSQGYKHKGTGLGLAITKELVEL 655 Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809 G + S G+ + P Sbjct: 656 QGGTISVKSQEGVGSSFTFVIP 677 Score = 80.8 bits (198), Expect = 1e-12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ + ++E+ D I ++ G + V KL GY E+ L FT ++ Sbjct: 57 ELRESEQRYRQLIESVQDIIYKVSPNGFFTFVSPVVEKLLGYTEEEFLNSHFTSVVKPGY 116 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDIS 562 V+ + ++S T K + + + ++ + DIS Sbjct: 117 RKVLIDFYRTMMSERQDSTY-IEFPVLAKNGRTVWIGQTVRLIETHGQIEELVAVARDIS 175 Query: 563 EWKQEKNKLSHAKKIA 578 + K + +L + Sbjct: 176 DRKLAEMELETTQTRL 191 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 28/383 (7%), Positives = 100/383 (26%), Gaps = 27/383 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTW 143 + + +G+ +S + K +G + + V + + +RQ++ Sbjct: 76 IYKVSPNGFFTFVSPVVEKLLGYTEEEFLNSHFTSVVKPGYRKVLIDFYRTMMSERQDST 135 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDK 202 Y + + G +++ + + + + E + L + Sbjct: 136 YIEFPVLAKNGRTVWIGQTVRLIETHGQIEEL-----VAVARDISDRKLAEMELETTQTR 190 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAH--------KD 251 + + ++ G ++ I + +++ A + Sbjct: 191 LSTLITNLQSGVMVEDERGRVILANALFCDIFQLPLTPDQLVGYDCTEARQQVKQLFAQP 250 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + LLT ++ + E+ + + F ++Y Sbjct: 251 EQFISRMNELLTGRQACVGEEISMANGRILELDYIPIFLDANQYMGHLWKYTDVTEKYMA 310 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLL 370 E ++ + F + + + + Y + + Sbjct: 311 RELIRRSEEKYRGIMNNMELGLFEVDNDQIIVRSYERCCQMLGYSEAEMVGKNAI----- 365 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 L + V + +R A + + + + + ++ + Sbjct: 366 --DLLVPAEFVGIVERQQQERQQGIAGSYELQLTKKDGSRIWVLVSGVPIQDEHGTVVGS 423 Query: 431 NGIEPEDVDTRINKRKMEIEVMQ 453 I + + + + ++ Sbjct: 424 MSIHYDMNERKQLEHELARAKQY 446 >gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223] Length = 1053 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 115/423 (27%), Positives = 199/423 (47%), Gaps = 19/423 (4%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIA 466 L + E + E ++ I KR ++ + +I+E +A Sbjct: 115 RELWLEKGRDELLEELHETNRALAQHQAGLEEEIAKRTKELAVSEELSRTIIEGAPSSVA 174 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 II+ +G+IL N+ +GY ++ L +P L+ P + LT L +D RQ L Sbjct: 175 IIDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTLPLRVDQRQLLN 234 Query: 527 K---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + T++ L+ + + I +L ++ + D++ K + +L+ AK AE Sbjct: 235 EAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEDA 294 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS FLA +SHEIRTP+ AIIG S + P + +Y + I S L+L I+ Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVSKIHSSATLLLGII 350 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700 ND+LD SKIE+GK+++ SL+E + + A +K + + S IP ++ D Sbjct: 351 NDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGD 410 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756 + Q+ +N+++NA+ FT G +I +S + +++ V DTG+GMT + Sbjct: 411 PLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFHVSDTGIGMTEKQTRNL 469 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814 + F Q S + GTGLGL +++ +V+ G+ + S P G+ F + + Sbjct: 470 FQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSQPDMGSCFTFNAWFDVDENQ 529 Query: 815 HPH 817 PH Sbjct: 530 APH 532 Score = 37.7 bits (86), Expect = 7.7, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 18/149 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKR 139 ID+ G + ++ T G A + +G L +++ L + P L Sbjct: 176 IDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTL-PLRVDQRQLLN 234 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + +T + +GT + + + ++ I+ N + + + Sbjct: 235 EAFYEAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNE 286 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 K E+K + + Sbjct: 287 AKAKAEDAVEVKSMFLANMSHEIRTPMNA 315 >gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1425 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 97/519 (18%), Positives = 196/519 (37%), Gaps = 25/519 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 +E ++ P + + N ++ + ++ Sbjct: 547 QIVQRKLAEHKLNEQLTFVQTLLNSLPNMVVLRDREQRITLCNQAYRDAF----IGELTQ 602 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G L P ++ + + + + + Sbjct: 603 DDG-DDLDRMPARERERVLREESGVWQSGEQLEG---AGNSRRQDGAMFHVIYTKRPYRS 658 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI----INR-EGIILST 477 + + + + + + + +L I ++ GI + +G L Sbjct: 659 PKGDMLGVLTVLTDVTRIKEAEARARKAETRLTQITDSMP-GIVYQYLWLGPGKGRFLYA 717 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEE 536 ++ S++ G ++IL + T + +++++ + L+ E Sbjct: 718 SQGASEILGASRQEILSAESGGEVFGFTEEALQDFVSKVANHAETLAPLDLEVRVERPEG 777 Query: 537 -KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + L +R + DI+ K +++ L A+ AE+ +S FLA +SH Sbjct: 778 ARYLQVRGSFVPQEEGHLILNGVIQDITALKHQEHDLREARAYAEQAMQVRSRFLATMSH 837 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTP++ + G E+++ N + S N +L +VND+LD SKIE+G+ Sbjct: 838 ELRTPISGMHGMLELLQMSEL----NDDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQ 893 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 + LH++ L + + I A+ K + + +A +P + D V Q+ N+L+ Sbjct: 894 LQLHYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLN 953 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ FT G +I I + + + V DTG+G+ + ++ PF Q+ + R G Sbjct: 954 NAVKFTERG-EIRIQVSFEKE-RLAIAVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGG 1011 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 TGLGL + + G + S P GT + FPL + Sbjct: 1012 TGLGLAICHQLAQKMGGTLVLESKPGHGTRLTFDFPLAE 1050 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 14/152 (9%), Positives = 50/152 (32%), Gaps = 7/152 (4%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + V ++ + K+ ++ + ++L + + + + +RE I N+A F + Sbjct: 544 LRRQIVQRKLAEHKLNEQLTFVQTLLNSLPNMVVLRDREQRITLCNQAYRDAFIGELTQD 603 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--- 549 + + + + + LE ++ + + + Sbjct: 604 DGDDLDR-MPARERERVLREESGVWQSGEQ--LEGAGNSRRQDGAMFHVIYTKRPYRSPK 660 Query: 550 -FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + D++ K+ + + A+ + Sbjct: 661 GDMLGVLTVLTDVTRIKEAEARARKAETRLTQ 692 Score = 38.1 bits (87), Expect = 6.8, Method: Composition-based stats. Identities = 29/307 (9%), Positives = 73/307 (23%), Gaps = 39/307 (12%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLKRQNT 142 D + ++ IG D D L P + + Sbjct: 580 DREQRITLCNQAY-------RDAFIGELTQDDGDDLDRMPARERERVLREESGVWQSGEQ 632 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G +G +V P S + G ++ + A ++ + Sbjct: 633 LEGAGNSRRQDGAMFHVIYT--KRPYRSPKGDMLGV--LTVLTDVTRIKEAEARARKAET 688 Query: 203 KFSHLHEIKK----GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-----YAHKDDV 253 + + + + + + K + ++ L+ + ++ Sbjct: 689 RLTQITDSMPGIVYQYLWLGPGKGRFLYASQGASEILGASRQEILSAESGGEVFGFTEEA 748 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L+ + E+ P + Q G+ + + Sbjct: 749 LQDFVSKVANHAETLAPLDLEVRVERPEGARYLQVRGSFVPQEEGHLILNGVIQDITALK 808 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + ++ FL ++ I G+ LL Sbjct: 809 HQEHDLREARAYAEQA------------MQVRSRFLATMSHELRTPISGMHGMLELLQMS 856 Query: 374 KLSDNNA 380 +L+D+ Sbjct: 857 ELNDDQR 863 >gi|108761684|ref|YP_628477.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465564|gb|ABF90749.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 967 Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats. Identities = 101/808 (12%), Positives = 238/808 (29%), Gaps = 108/808 (13%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--W 143 + D G ++ G + +G D + + L Sbjct: 43 VFQTDLAGTWTFLNPAWTDITGFSVEESLGRSFSDFLHPDDRERDPEPLQKLFAGEVEFV 102 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ Y +++ A ++ + G G ++ R ++ Sbjct: 103 RHEMRYLTRDGS--YRWVEVFARLMHDDDGGILGTAG--TLNDFTERKAADGALARRERY 158 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + L ++++ + + +P H ++V + A +L +++ Sbjct: 159 LTALVDMQQRLLATQDGGDLYGPALAPLGHASGASRVYVFELHRAQDGAILSSQRAEWCA 218 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFG-----TLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + D + + ++ ++ P Sbjct: 219 PGVKPEIDNPDLQNVPMEPALRRWTETLSRGDVIEGLVASFPASERELLDPQGILSLLVL 278 Query: 319 ENLTPETV---------------DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-- 361 + D+ + + G + A + + Sbjct: 279 PLRVRGVLTGFVGFDNTSEARRWDRLEVDLLSAAAGAISMALERRESERALRERERRFRQ 338 Query: 362 -IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--------------- 405 L + + + + + W Sbjct: 339 LAENASDVLYVYRREAPRGFAYVSRVAHTKLGYGPVAHYADAELWYRRVHEEDRALMEQL 398 Query: 406 ------------------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 +L + + + + G+ + + R + + Sbjct: 399 LEAPEPFQGAPVVVRFLHPDGRTLWLEHVVAPVTDASGRMVAVEGLARDITERRQAEEAL 458 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTP 506 + ++LE D A I R+ I+ N A+ G+ + ++ +P T F+ Sbjct: 459 RLSEASFRALLEGVPDA-AAIERDNQIVYANAALVATLGFERADQLVGRPLTEFVRDMRS 517 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 T E+ + ++ + + + D++E +Q Sbjct: 518 PDAVRA--------GALTGERRLVRRDGRTRVAEVVSLPLRFDGQPAVVSIARDVTEQRQ 569 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ------------- 613 + +L+ A ++A + A ++HEI PL ++ + ++ Sbjct: 570 LQARLTLADRLASVGT-----LAAGIAHEINNPLAFVLSNLGFLSDEFSRSLPPGDGAAA 624 Query: 614 ----RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 G + E V IV L S+ + +++ P+ + + Sbjct: 625 LQARLKGEPDLGEWQEVLQEACEGAERVRQIVRQLKTFSRPDEERVS----PLDVHAVLE 680 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG----QI 725 + R +R + +IP ++A+ + Q+ LN++ NA P G +I Sbjct: 681 SVAMMAANEI-RHRAQLRRDY-GDIPPVMANEGKLSQVFLNLVVNAAQAIPEGAAHRHEI 738 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++T V++ V DTGVG+ +++ PF G GTGLGL + +++ Sbjct: 739 RLATRVDGAGRVVVEVADTGVGIAREVIDRIFDPFFTTKP----VGVGTGLGLSICHSII 794 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDT 813 G + S P +GTL ++ P +T Sbjct: 795 SGLGGDITVDSEPERGTLFRVVLPTPET 822 Score = 78.9 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 19/145 (13%), Positives = 55/145 (37%), Gaps = 5/145 (3%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + ++++ + + + G N A + + G+ VE+ L + F+ FL + Sbjct: 29 EHRYRGVIDSLREVVFQTDLAGTWTFLNPAWTDITGFSVEESLGRSFSDFLHPDDRERDP 88 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566 L ++ + ++ + + T++ + + + + + T++D +E K Sbjct: 89 EPLQKLFAGEV-EFVRHEMRYLTRDGSYRWVEVFARLMHDDDGGILGTAGTLNDFTERKA 147 Query: 567 EKNKLSHAKKIAEKESSHKSDFLAR 591 L+ ++ + LA Sbjct: 148 ADGALARRERYLTALVDMQQRLLAT 172 >gi|83814352|ref|YP_446607.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] gi|83755746|gb|ABC43859.1| two-component sensor histidine kinase [Salinibacter ruber DSM 13855] Length = 959 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 134/753 (17%), Positives = 257/753 (34%), Gaps = 43/753 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYG 145 + +D G + ++ + +T G + +G + + + + ++R T G Sbjct: 225 FALDPTGQFQWWNDRVLETTGLS-DEDVG-SVDALDHFVPAEREKQAKQAIRRVLQTGSG 282 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + + VP + P+ + E + + + +++F Sbjct: 283 QVEVPLVADDGVAVPYEFVGNPVENLEGE---RQIVCVGRNVAERKRRERELRESERRFQ 339 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYP 260 + + V + L + ++ + Sbjct: 340 AMLNDPNILAGVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETENRSAVREKV 399 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-- 318 +E + + + T + T + E + +E Sbjct: 400 ERVAEGEYVRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRREEALQ 459 Query: 319 --ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E ++ P F++ A L D GG + A Sbjct: 460 VAEGRYRALIENFPGGVFLFDEDLQYTLAGGRELRDAGLSPSDV--EGGGPHDIFPAAL- 516 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + A + + ++ + + Sbjct: 517 --AEELDMYFRRALNGEKNAFEQTM-----DGRRYF---NRTLPVRDESGTVIAGMAVAQ 566 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILR 494 + + R K K+E + E + G + + L+ ++ G + Sbjct: 567 DITEERRRKEKLERKNDLFQRAQEIANVGGWEYDLDTGALTLTDQAYRIHGVSPGAKMTL 626 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-C 553 + N + +E + EEK + R ++ + Sbjct: 627 ERSHGLYHPNDRWEAEEAFRRAAEDGVPYDVEARLITDAGEEKWIRTRGAPQQDDGRTVR 686 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGF 606 T+ DI++ K+ + L AK AE S KS FLA +SHEIRTPLT+IIGF Sbjct: 687 VRGTIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPLTSIIGF 746 Query: 607 SEVIKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+I ++ L + YA I+RSG +L+ + +L++SK++SG+M L PV L+ Sbjct: 747 AELIGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLETAPVDLN 806 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E + A+ ++ A EK + R D ++ + N++SNAI +T GG+I Sbjct: 807 EQIRWAVQELRPKAEEKGV--RLQLETGCAVAEGDEGGIQIVIRNLVSNAIKYTEQGGRI 864 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + + + +L V DTG+GM E +PF Q EGTG+GL + V Sbjct: 865 WVR-SFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAVTNKAV 923 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G + + +GT I P + HP D Sbjct: 924 AQMDGSIEVDTEKGEGTRFTIHLPASE-EHPTD 955 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 19/166 (11%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLC-------SILE 459 A+ P G+ V R++E + +L +L Sbjct: 159 AVQLSPLVLCGGMAMVAFVVGVVARWVLRVRRHLADQARELEEQRDRLEGHRAYTNRLLN 218 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILS 518 AT D ++ G N V + G ED+ F+ + +L Sbjct: 219 ATDDLFFALDPTGQFQWWNDRVLETTGLSDEDVGSVDALDHFVPAEREKQAKQAIRRVLQ 278 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDI 561 Q + + + L ++ Sbjct: 279 TGSGQV---EVPLVADDGVAVPYEFVGNPVENLEGERQIVCVGRNV 321 >gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1049 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 93/414 (22%), Positives = 172/414 (41%), Gaps = 12/414 (2%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 N LAM E+ + + + +D + + R + ++E I Sbjct: 366 NELAMQVHDREQQLTATKEDLEKRVAARTLDLQTSMRALSEREANYRYLVEHARSIILRW 425 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLE 526 +G+I N FGY + +L + N S + + ++ Sbjct: 426 KPDGVITFCNDYALSFFGYSEQALLGSSVYETIVPNRESSGRNLHQRVDEVANTPNSFTF 485 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 K+ + + + + + DI+ K + +L+ A+ A + Sbjct: 486 HENENICKDGRRVWVAWANRAILDEQGQLKELLSVGADITHLKMIQQELTLARDAANAAN 545 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS FLA +SHEIRTP+ +I+G ++++ + I R+G+ ++ I+N Sbjct: 546 RAKSAFLAVMSHEIRTPMNSILGMTDLLMEHAL----DAEQRHALQAIARAGDALMIIIN 601 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADL 701 D+LD+SKIE+ ++ L LD ++ ++ L A EK + + + P D Sbjct: 602 DILDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQ 661 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI +N++ NAI FT G I + + + V D+G+G+ + E + F Sbjct: 662 VRLRQILVNLIGNAIKFTHQGS-IEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFN 720 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 Q +S R GTGLGL +++ +V G ++S P KG+ P+ H Sbjct: 721 QGDSSVTRRYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIPMAPVPH 774 Score = 38.5 bits (88), Expect = 5.2, Method: Composition-based stats. Identities = 28/294 (9%), Positives = 67/294 (22%), Gaps = 24/294 (8%) Query: 44 PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP---------RTVRFTWNIDAHGY 94 HD +Q T ++ E LD + + G Sbjct: 371 QVHDREQQLTATKEDLEKRVAARTLDLQTSMRALSEREANYRYLVEHARSIILRWKPDGV 430 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTWY-GKTTL 149 + ++ G ++G + + + + + ++ N++ + Sbjct: 431 ITFCNDYALSFFGYSEQALLGSSVYETIVPNRESSGRNLHQRVDEVANTPNSFTFHENEN 490 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G V + A I + G + + + Sbjct: 491 ICKDGR--RVWVAWANRAILDEQGQLKELLSVGA--DITHLKMIQQELTLARDAANAANR 546 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 K +V + + +L H + L+ + Sbjct: 547 AKSAFLAVMSHEIRTPMNSILGMTDLLMEH--ALDAEQRHALQAIARAGDALMII----I 600 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + D I ++ + L N + L+ R E Sbjct: 601 NDILDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLS 654 >gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 822 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 185/384 (48%), Gaps = 20/384 (5%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRK 495 + RK+ QL S+L + S IA+++ + ++++ N + ++F G + + Sbjct: 170 RQLDVANRKLLAREEQLSSVLASMSAKIAVLDTDMMVIAANDSWREIFLPGTSEDVLDGI 229 Query: 496 PFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 F + + + + + ++ + R+ + + E K L + + Sbjct: 230 DFRDAVFSSGCLRGSLHELVDGVRSVVEGNSRKFSYEYSFEQGGEPKWYLLEVTPMQ-GE 288 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 S + +I+E K+ + +L A+ AEK + KS FLA +SHEIRTPL AIIG +++ Sbjct: 289 SGGAVASFIEITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLT 348 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + E + S + +L ++ND+LD+SK+E+ + L SL EA+ + Sbjct: 349 LRSELST----KQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRD 404 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + ++ A +K + + +++P + D +KQI N++ N+I FT +GG + + Sbjct: 405 VVRSMEQQARDKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTENGG-VFVQV 463 Query: 730 TH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + +++ VRDTG+G+ + + + F Q +S + GTGLGL +++ Sbjct: 464 SKLEDRKDSDEAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTGLGLAISRE 523 Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807 +V+ G+ + S+ G++ Sbjct: 524 LVEMMGGRIGVKSSEGFGSVFSFH 547 >gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum thermopropionicum SI] Length = 589 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 79/428 (18%), Positives = 176/428 (41%), Gaps = 35/428 (8%) Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L RS ++ + + + ++ + E+ + Sbjct: 186 WLSRSISRPLSQMSAVTREMARGNFRQRVEVTSDDEVGRLAEDFNYLAASLDQTV----- 240 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + E ++ +IL ++G+ ++ G ++ N A+S+ ++L +P + + Sbjct: 241 SALSHEKGKIENILANMTEGVLAVDGRGQVILANGAISRTLKVDPAELLGRPVSEL---S 297 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDI 561 + + + ++ E + + + L + + DI Sbjct: 298 CCPGLAGLFSAVAGSGEPRSAEFEM-----DGGRTFVLAHLAPLREAGGSYGAVGVLQDI 352 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ + + DF+A VSHE+RTPLT+I GF E + + G +G Sbjct: 353 TELRKLE--------------LLRRDFVANVSHELRTPLTSIQGFLEALMD---GTIGES 395 Query: 622 RYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + E Y I + + ++N+LLD+++IESGK+ P+ + V I ++ Sbjct: 396 QARERYLKVIHQETLRLNRLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIE 455 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +I + +P +L + ++Q+ N+L NA+ ++P G + + ++ + Sbjct: 456 RHQITVVPEMPEGLPLMLGNEDRIEQVLTNLLENAVRYSPPGSTVTVRAAGRE-GKITVE 514 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G G+ +L + F ++ S+ GTGLGL + + +++A+ G+ + S + Sbjct: 515 VADRGPGIPPEDLPHIWERFHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQSEAGQ 574 Query: 801 GTLIEIIF 808 G++ Sbjct: 575 GSVFSFTL 582 >gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 661 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 138/631 (21%), Positives = 256/631 (40%), Gaps = 26/631 (4%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYY 247 + L E ++ I Q ++ + + Sbjct: 18 AGEFRAASGDFYRALVENVGDILTILDCDGVITYQSPAVRKAMGTSEDLLVGRRIADLVH 77 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + ++ S + E +N + L + + L Sbjct: 78 PDDRERIERRIAECARVPGSEVLELVRLPHLNGTWRRLETRGCNLIGD-PDVAGILCVSR 136 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGL 366 + + + + + + G + + + + AG Sbjct: 137 DVTETHMLESKLREAEQLARF---GHWRWVKGEPAPQWSRGVARILGLEEGQ-LPAAGDW 192 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L P+ D + + + + + + + N + + +A+ + E Sbjct: 193 YEHLVHPEDRDELLSQFIDAFETHEPVNSIT----RFRAGDGNYRYIKTYAYAEADAYSE 248 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 G+ + + + ++ + + E SD +A + E ++ + AV + G Sbjct: 249 IGALVGLAEDVHEEVEAELALKASEAKYRLMTEQASDVVAHYDAESKVIFISPAVEPILG 308 Query: 487 YPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 E+ + P + + + + ++ +++ K+ + L + Sbjct: 309 RKAEEFIGNPISEEMIHREDFPRARDAFIQCITSG--ESVHFDYRFLHKDGHYVWLESTM 366 Query: 546 KKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++ + DISE K+ + +L A++ AE S KS FLA +SHE+RTPL Sbjct: 367 RRACDTDGRQTAEVIGITRDISERKRHEMELLDARERAETASRTKSRFLANMSHELRTPL 426 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFSE+++ Q FG LG+PRY EYA I+ SG L+LD+++D+LD+SKIE+GK LH E Sbjct: 427 NAIIGFSEILRMQMFGALGHPRYTEYAQLINESGALLLDLISDILDMSKIEAGKYELHPE 486 Query: 661 PVSLDEAVSEAISLVQLYANEKRILI--RTSFANNIPRILADLRSVKQIALNILSNAIHF 718 V + + LV+ A E I + + A ++AD R++KQI LN+LSN+ F Sbjct: 487 TVDAAALIESCVRLVRGRAEENGIHLVKKIQCAELGGTLVADERALKQIMLNLLSNSAKF 546 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP+GG+I ++ T + E + V DTG G+ ++ + +PF QI + EGTGLGL Sbjct: 547 TPAGGRISVALT-ETEETICFAVADTGRGIPADQIARLGQPFEQIATDAALSKEGTGLGL 605 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L +++ + + G I S GT + + P Sbjct: 606 ALVRSLAELHGGSMAIDSELGVGTTVTVTLP 636 Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 29/374 (7%), Positives = 89/374 (23%), Gaps = 16/374 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D G + S + K +G ++G R+ D+ + I + + + + Sbjct: 43 LDCDGVITYQSPAVRKAMGTSEDLLVGRRIADLVHPDDRERIERRIAECARVPGSEVLEL 102 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 P I + +G + + + + ++ Sbjct: 103 VRLPHLNGTWRRLETRGCNLIGDPD--VAGI--LCVSRDVTETHMLESKLREAEQLARFG 158 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 H + + + D L ++ + E Sbjct: 159 HWRWVKGEPAPQWSRGVARILGLEEGQLPAAGDWYEHLVHPEDRDELLSQFIDAFETHEP 218 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--- 324 + F + N K Y + E + + + Sbjct: 219 -VNSITRFRAGDGNYRYIKTYAYAEADAYSEIGALVGLAEDVHEEVEAELALKASEAKYR 277 Query: 325 -TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 ++ Y + + +P+ + K+ + I + +A Sbjct: 278 LMTEQASDVVAHYDAESKVIFISPAVEPILGRKAEEFIGNPISEEMIHREDFPRARDAFI 337 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + + R + + + + + GI + + + Sbjct: 338 QC---ITSGESVHFDYRF--LHKDGHYVWLESTMRRACDTDGRQTAEVIGITRDISERKR 392 Query: 443 NKRKMEIEVMQLCS 456 ++ ++ + + Sbjct: 393 HEMELLDARERAET 406 >gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 568 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 41/363 (11%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + E ++ +I+ +DG+ + +G I+ N A K+ +E L P L Sbjct: 244 QGEKNKIEAIIRFMTDGVVATDAKGRIIHFNEAAEKMLNANLE--LGMPIEGIL------ 295 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQ 566 + D+ T+ K+L++ I K Y +HDI+E + Sbjct: 296 -------NLKKEDVVATMNC-------GNKVLTVNIAPLKGNQQIEGYVYVLHDITEQHK 341 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + + +F+A VSHE+RTP+ I + E + + + ++ Sbjct: 342 L--------------DTMRKEFVANVSHELRTPIATIKSYVETLL---YSDVDAEYSKKF 384 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 ID + + +V DLL +SK++S NL FE +L++ V EAI+ + + A +K + Sbjct: 385 LKIIDSETDRMTRLVKDLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKL 444 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + D ++Q+ +N+++NAI +TP G I I T + L V D G+ Sbjct: 445 IVDLQETPRYVYIDRDKMEQVIVNLVTNAIKYTPENGMIKIMTEY-DESFASLIVEDNGI 503 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ ++ GTGLGL + K +V+ + G+ I S KGT++ + Sbjct: 504 GIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRV 563 Query: 807 IFP 809 P Sbjct: 564 KLP 566 >gi|218438990|ref|YP_002377319.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171718|gb|ACK70451.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 1516 Score = 343 bits (881), Expect = 5e-92, Method: Composition-based stats. Identities = 110/628 (17%), Positives = 231/628 (36%), Gaps = 32/628 (5%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + E + + Q P + + K + + Sbjct: 900 QDQNRVLEQWEQALETNSPFQAEYRFQRPDGIVTWVYGQAVAETNDQGKLEGFLGTITDI 959 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 +++ + Q+ + + ++ + ++ + E Sbjct: 960 SDRKQAEVKLQKLNDELEQKVEVRTRHLQQANQHLRQE-----ILERQQAEEALHKSEAQ 1014 Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + I FV G F +NP+ Y+S + + ++D Sbjct: 1015 LRSMFENAAIGIAFVDLEGKPFKSNPALEKFLGYRSSE-LAQMSFTEFTYPEDIMTDLLL 1073 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + I+ + + N + + + D Sbjct: 1074 YQDLFTSNKN----SYQMEKRYIRKDG-QGVWGHLTVSLVRNTQGKPQFAIAMVEDISDA 1128 Query: 441 RI-------NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + ++ + L ++++ + I + NR+G N+A++ +G VE++ Sbjct: 1129 KQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQGQYTLANQAMAMAYGTTVEELE 1188 Query: 494 RKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549 K + V + SL+ E+ + E + I Sbjct: 1189 GKSDADFHIIPAEVTQVQIDEEEVMNSLESLLIPEQPLTLANGEIRYFQTIKTPLISPDG 1248 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DI+E KQ + K+ A ++ + K+ F+ VSHE RTPLT+I+G++E Sbjct: 1249 KAHYILGVATDITEHKQIQQKIEKALIKEKELNQLKTQFIDVVSHEFRTPLTSILGYAE- 1307 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + L + Y + I +G + D++ D+L IS+ ESGK+ L+ P++L+ Sbjct: 1308 LLERHSDKLSEQKKNNYLHKIRIAGQRLSDLIEDVLCISRAESGKLQLNPHPLNLEVFCQ 1367 Query: 670 EAISLVQLYANEKRILIRTSFANN----IPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + I +Q+ K + + + + IL D + ++ I N+LSNA+ ++ G ++ Sbjct: 1368 DLIEEIQIGI-GKNHEMIFTRQPDSFNSLNGILLDEKLLRHILSNLLSNALKYSSLGSRV 1426 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S + NE+VI + D G+G+ K F + S GTGLGL + V Sbjct: 1427 ELSLYYK-NEQVIFEISDQGIGIPAEAHPKLFDSFYRA--SNVGNIPGTGLGLHIVYKYV 1483 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + G S + GT + P+ +T Sbjct: 1484 TLHGGTIDFSSKISVGTTFRVKIPISET 1511 Score = 135 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 48/511 (9%), Positives = 127/511 (24%), Gaps = 28/511 (5%) Query: 97 EISEELPKTIGNYAFKM--IGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIE 153 SEE + G + ++ D + L + ++ + + Sbjct: 505 YWSEETYRIFGLESQELHLTEKTFFDCLHPNDREFVIQQFKQALSNRESYNINYRIIRPD 564 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 T I I + G + K ++K H+ Sbjct: 565 QTIRI--IQNQGNIILDSQGNPI--QMIGTIQDITESKLMEDHLKESEEKLRHIVTTTAD 620 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 V +P K + Y + + + + L + Sbjct: 621 GIIVMNHSG-YIYFVNPAAESFFGLKADEFSGYEWNFSINHDSTELAIEHPNNKLLFLEV 679 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + E + ++ Sbjct: 680 KIVETLWDGEPVYLISLR------------DITQRKQAEEALKVSEKRYRDLINNLHAGV 727 Query: 334 FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 VY + +NP L + + + ++ + T Sbjct: 728 IVYRADKSILLSNPKANELLEISLEQMLGKTAIDPDWYFLREDGTKMPVEEYPVNIVIST 787 Query: 393 CIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + + R + + F + N + + + + + ++ Sbjct: 788 RYPLKNYVVGVHRPRSKTIIWLLINAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQDSK 847 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + ++ +A+ GI + +G + N+ + G + L K ++ + + + Sbjct: 848 RRYVTLAQASPVGIFRTDIQGNCIYVNQRWQAIAGLTWQKALGKGWSQAIHPQDQNRVLE 907 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567 + L + + + + + + T+ DIS+ KQ Sbjct: 908 QWEQALETN--SPFQAEYRFQRPDGIVTWVYGQAVAETNDQGKLEGFLGTITDISDRKQA 965 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + KL E++ ++ L + + +R Sbjct: 966 EVKLQKLNDELEQKVEVRTRHLQQANQHLRQ 996 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 65/560 (11%), Positives = 138/560 (24%), Gaps = 96/560 (17%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 GY+ ++ G A + G I+ ++ + N Sbjct: 629 GYIYFVNPAAESFFGLKADEFSGYEWN-----FSINHDSTELAIEHPNNKLLFLEVKI-- 681 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 V P+Y + K +K++ L Sbjct: 682 ------VETLWDGEPVY-----------LISLRDITQRKQAEEALKVSEKRYRDLINNLH 724 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP-- 270 V + I L + L + D E + EE + Sbjct: 725 AGVIVYRADKSILLSNPKANELLEISLEQMLGKTAIDPDWYFLREDGTKMPVEEYPVNIV 784 Query: 271 --------------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + TI F + + ++ ++ Sbjct: 785 ISTRYPLKNYVVGVHRPRSKTIIWLLINAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQ 844 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + + P+ F GN Y N + + + G + + Sbjct: 845 DSKRRYVTLAQASPVGIFRTDIQGNCIYVNQRWQAIAGLTWQKAL-GKGWSQAIHPQDQ- 902 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 N ++ + A R + + N + G Sbjct: 903 --NRVLEQWEQALETNSPFQAEYRFQR---PDGIVTWVYGQAVAETNDQGKLEGFLGTIT 957 Query: 436 EDVDTRINKRKMEI---------------------------------------EVMQLCS 456 + D + + K++ QL S Sbjct: 958 DISDRKQAEVKLQKLNDELEQKVEVRTRHLQQANQHLRQEILERQQAEEALHKSEAQLRS 1017 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + E + GIA ++ EG +N A+ K GY ++ + FT F ++ Sbjct: 1018 MFENAAIGIAFVDLEGKPFKSNPALEKFLGYRSSELAQMSFTEFTYPEDIMTDLLLYQDL 1077 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + + + K+ + + + + + + + DIS+ KQ + + Sbjct: 1078 FTSNKNS-YQMEKRYIRKDGQGVWGHLTVSLVRNTQGKPQFAIAMVEDISDAKQSEIE-- 1134 Query: 573 HAKKIAEKESSHKSDFLARV 592 + +A++ FL V Sbjct: 1135 --RILAQEALKENQIFLRNV 1152 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 54/517 (10%), Positives = 148/517 (28%), Gaps = 59/517 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G I + G ++ M+ D ++ I L + + Sbjct: 378 TDEQGNFTYICPNIKHIFGYSCQEIENMKSIDQLFGQNL---FKITQLEESGEIINIERE 434 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KKFSHL 207 + G + I++ IY + + F A + + Sbjct: 435 ILDKLGNTHVILINI--KQIYIKEKNF-----LFTCRDITERKQAEASLRDSQVRLAKAQ 487 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----EYYAHKDDVLKTEKYPLL 262 G+ ++ + + ++++ LT + D +++ Sbjct: 488 QIAHLGNCDWNLITHEFYWSEETYRIFGLESQELHLTEKTFFDCLHPNDREFVIQQFKQA 547 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S S + + + ++ + + + S ++ + Sbjct: 548 LSNRESYNINYRIIRPDQTIRIIQNQGNIILDSQGNPIQMIGTIQDITESKLMEDHLKES 607 Query: 323 PETVDKC----PIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + V G +++ NP+ K+ + S Sbjct: 608 EEKLRHIVTTTADGIIVMNHSGYIYFVNPAAESFFGLKADEFSG---------YEWNFSI 658 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 N+ + + + + ++ W+ E ++ + Sbjct: 659 NHDSTELAIEHPNNKLLFLEVKIVETLWDGEPVYLISLR-------------------DI 699 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-- 495 + + +++ + ++ G+ + + IL +N ++L +E +L K Sbjct: 700 TQRKQAEEALKVSEKRYRDLINNLHAGVIVYRADKSILLSNPKANELLEISLEQMLGKTA 759 Query: 496 --PFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 P FL ++ + + ++S + + + + ++ L I S Sbjct: 760 IDPDWYFLREDGTKMPVEEYPVNIVISTRYPLKNYVVGVHRPRSKTIIWLLINAFGEFNS 819 Query: 552 ----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + +T DI+E+KQ + L +K+ + Sbjct: 820 CKQLNQVIVTFVDITEFKQAQEALQDSKRRYVTLAQA 856 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 46/483 (9%), Positives = 122/483 (25%), Gaps = 73/483 (15%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLK 96 + E Q T + ++ + + + + D G Sbjct: 812 NAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQDSKRRYVTLAQASPVGIFRTDIQGNCI 871 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGT 155 +++ G K +G + + L+ + + + +G Sbjct: 872 YVNQRWQAIAGLTWQKALGKGWSQAIHPQDQNRVLEQWEQALETNSPFQAEYRFQRPDG- 930 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + + A+ + + GF G + ++L+ + E++ H Sbjct: 931 -IVTWVYGQAVAETNDQGKLEGFLG--TITDISDRKQAEVKLQKLNDELEQKVEVRTRHL 987 Query: 216 --SVEKEKYDIFSQQSPPPHLRMKNKVSS------------------------------- 242 + + + +I +Q L Sbjct: 988 QQANQHLRQEILERQQAEEALHKSEAQLRSMFENAAIGIAFVDLEGKPFKSNPALEKFLG 1047 Query: 243 -----------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 Y L TS ++S ++ + + Sbjct: 1048 YRSSELAQMSFTEFTYPEDIMTDLLLYQDLFTSNKNSYQMEKRYIRKDGQGVWGHLTVSL 1107 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-----------TVDKCPIPFFV-YSHG 339 ++N + ++ S + + L E +D P FV G Sbjct: 1108 VRNTQGKPQFAIAMVEDISDAKQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQG 1167 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 AN + + +V+++E + +++ + ++ + I Sbjct: 1168 QYTLANQAMAMAYG-TTVEELEGKSDADFHIIPAEVTQVQIDEEEVMNSLESLLIP---- 1222 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQ 453 + I + + G+ + + + ++K+ E E+ Q Sbjct: 1223 EQPLTLANGEIRYFQTIKTPLISPDGKAHYILGVATDITEHKQIQQKIEKALIKEKELNQ 1282 Query: 454 LCS 456 L + Sbjct: 1283 LKT 1285 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 14/173 (8%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 +++ + N++ + IL SD + I + +G + +FGY Sbjct: 340 FAVRAAAELERQYNEKALRESEQFYRLILSNISDAVLITDEQGNFTYICPNIKHIFGYSC 399 Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++I K QN +T++ +E+ L ++ + I + Sbjct: 400 QEIENMKSIDQLFGQNLFK-----ITQLEESGEIINIEREILDKLGNTHVILINIKQIYI 454 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-----VSHEI 596 + + T DI+E KQ + L ++ K L ++HE Sbjct: 455 KEKN-FLFTCRDITERKQAEASLRDSQVRLAKAQQIAH--LGNCDWNLITHEF 504 >gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp. JR] gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola potens JR] Length = 598 Score = 343 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 177/371 (47%), Gaps = 30/371 (8%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E ++ S++ + +G+ +R G ++ N KL + + P +++ Sbjct: 255 ALHQEKSKIESLIMSLGEGVIATDRTGTVVRVNTMARKLMQFAED-----PIGRNIKECC 309 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563 + + ++L + ++ KE + K + + DISE Sbjct: 310 SGGVAEIIQKVLEEGIGKSA-----TLKKENITVLALASPIKDSRENISGTVCVLQDISE 364 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + + DF++ VSHE+RTPLTAI G++E + + G + +P Sbjct: 365 AEKLE--------------QMRKDFVSDVSHELRTPLTAIRGYNEALSD---GTVEDPEI 407 Query: 624 IE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + Y N I + +++DLLD+S+++SGK++L EP+ + + + ++ N K Sbjct: 408 RQKYHNIIREETQRLERLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIK 467 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + NIP I+ + + Q+ + +L NA+ +T +GG+I +S + V + + Sbjct: 468 GIAVELDIPQNIPYIMGNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAIT 527 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ ++ + F ++ S+ G GTGLGL +A+ +V+ + G + S +GT Sbjct: 528 DTGKGIPKEDIPFIWERFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGT 587 Query: 803 LIEIIFPLYDT 813 +I+FPL ++ Sbjct: 588 TFKIVFPLAES 598 >gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1032 Score = 343 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 112/783 (14%), Positives = 232/783 (29%), Gaps = 95/783 (12%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 FDPI TW + G + + + G A + +G ++ + D Sbjct: 149 DHAFDPI-----LTWELG--GNITYWNAGAERLYGYTAAEAVGRSAHELLQTVLPDSRTA 201 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + L+ W G+ G + V + + + + Sbjct: 202 LEATLRCGGRWEGELRHRTKGGNWVVVD---SRMVVARATGALEILQS---DRDVTDQQR 255 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHK 250 A + ++F + E E+ + + + ++V Sbjct: 256 VEADVRDALERFRGVVEQAVDGIITIDERGTVETVNPAVARVFGYAPDEVVGRNVSLLMP 315 Query: 251 DDVLKTEKYPLLTSEESS------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL- 303 D L + + + N ++ ++ S F + Sbjct: 316 DPYRGEHDGYLADYLRTGTAKVIGVGREVRGRRKNGTEFPLDLTVSEIRVASGRRFTGIV 375 Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 E V++ FF++ G + N + + + Sbjct: 376 RDITERKRAEEQLRASEARFRNFVEQAADAFFLHDAGGTILDVNRRACESLGFTREELVG 435 Query: 362 IA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + L + + R D RL + + Sbjct: 436 MRAEAIDPDLSPDLLRRVAEDLATGRQVSLDARHRRKDGATFPVEVRLSPFEVDGRR--- 492 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-- 470 + + D R+ + + + ++A + GI I + Sbjct: 493 ----------------LVLSLVRDITDRRLAEESLRLRDR----AIQAVTQGILITSPAL 532 Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + I + + GYP + L + +++ + E + + Sbjct: 533 PDNPITYASPGFEGVTGYPPREALGRNCRFLQGKDSDPAAVALVREAVRAGRDCAV--EV 590 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 L K+ + + + + + + D+++ K+ + + HA K+ Sbjct: 591 LNYRKDGTPFWNALSVSPIRDDAGELTHFVGVLVDVTDRKKLEEQFHHALKM-----EAV 645 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 V+H+ LT I G+SEV+ R I +G + + LL Sbjct: 646 GRLAGGVAHDFNNLLTVINGYSEVLLAGMSDESDPDR--RAVAAIRDAGERAAALTSQLL 703 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 S+ + L + L++ V+E L+ + + + T+ R+ D Sbjct: 704 AFSR----RAVLKPRVLDLNKVVAETGKLL-GRLIGEDVRLSTALDPRAGRVSVDPGQFG 758 Query: 706 QIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNY 751 Q+ +N+ NA P+GGQ+ I T V+ V DTG GMT+ Sbjct: 759 QVLMNLAVNARDAMPTGGQLTIETRAVVLDEAYAKGWPEVRPGRYVMTAVSDTGCGMTDE 818 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + +PF + G+GTGLGL +V + G ++S GT ++ P Sbjct: 819 VKSRVFEPFFTTKEA----GKGTGLGLATVFGIVKQSGGHAEVYSEVGVGTTFKVYLPAV 874 Query: 812 DTS 814 + Sbjct: 875 SDA 877 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 43/438 (9%), Positives = 117/438 (26%), Gaps = 16/438 (3%) Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G +Y+ + A + + R G V R + L K+ + L + Sbjct: 94 GLLVYLAVGGAGVYLADARRTAQGLAEASAAAVATESAAHRQTQEALRKQQARLLDHAFD 153 Query: 214 HSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + +I + + + VL + L + + Sbjct: 154 PILTWELGGNITYWNAGAERLYGYTAAEAVGRSAHELLQTVLPDSRTALEATLRCGGRWE 213 Query: 273 EDFHTINLNQYTK----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + + + A + V++ Sbjct: 214 GELRHRTKGGNWVVVDSRMVVARATGALEILQSDRDVTDQQRVEADVRDALERFRGVVEQ 273 Query: 329 CPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G + NP+ + Y + + L L+ P +++ L Sbjct: 274 AVDGIITIDERGTVETVNPAVARVFGYAPDEVVGRNVSL--LMPDPYRGEHDGYLADYLR 331 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 I R + + E GI + + + + ++ Sbjct: 332 TGTAKVIGV-GREVRGRRKNGTEFPLDLTVSEIRVASGR--RFTGIVRDITERKRAEEQL 388 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + + +E +D + + G IL NR + G+ E+++ +P Sbjct: 389 RASEARFRNFVEQAADAFFLHDAGGTILDVNRRACESLGFTREELVGMRAEAIDPDLSPD 448 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWK 565 ++ ++ + + K+ + + + + + DI++ + Sbjct: 449 LLRRVAEDLATGRQVSLDAR---HRRKDGATFPVEVRLSPFEVDGRRLVLSLVRDITDRR 505 Query: 566 QEKNKLSHAKKIAEKESS 583 + L + + + Sbjct: 506 LAEESLRLRDRAIQAVTQ 523 >gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202] gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60] Length = 1520 Score = 343 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 111/666 (16%), Positives = 219/666 (32%), Gaps = 45/666 (6%) Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 FR + D + AL R L + ++ + V I + ++ Sbjct: 355 FRAERLAQGMTADLERLALVARNTSNAVILTDPQRRITWVNDGFERITGYRHDDVLGKVP 414 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + + + + + +Y + + Sbjct: 415 GALLQCEKTDP-----RVIQAVHQALDRGLAFKGELLNRGRAGEEYWIEMEIQPRYDAEH 469 Query: 298 ESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLL 350 +++ + + + + + + L N ++ Sbjct: 470 RLIGFMAVESDITERKNTQHRLEAALRDNDALLATLNVHGIIAITDRHRRLIEVNDAYCQ 529 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 +T Y + + + Sbjct: 530 ITGYPREALLGQPPSI----VNSGTQSPAFWRQAWELLLAGQPWRGEVCNRA---RDGRV 582 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN- 469 + + + I+ + + + + I QL E G+ + Sbjct: 583 YWVDTTIAPFKDADGQIDKYISIQFDITQAKTLQTNLSIARNQLLRATEVAELGVWSWSM 642 Query: 470 REGIILS---TNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLR 522 +G ++ N ++ P E + + + ++ L E L Sbjct: 643 ADGTLIFDETMN----AIYAIPPEMQDPHRLYAYWHTLIHPDDVEEVDATLQETLRAGQG 698 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + +++ + + + + + DI+ +Q + L AK AE Sbjct: 699 HVCRQRFRIRVGDQERIIESAAVVEQQGIGDTLMLVGINRDITRQRQAEATLQAAKLAAE 758 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS FLA +SHE+RTPL AI+G ++ R +YA + + +L Sbjct: 759 NANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTH----RQADYATKSEAAARALLR 814 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698 ++ND+LD SKIE+GKM L EP SL + + ++ + +K + + ++P ++ Sbjct: 815 LLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSSRQKPVEVLFDIDPSLPHWLV 874 Query: 699 ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEK 755 D ++Q+ +N+ NA+ FT G + I + V L VRDTG+G+ + Sbjct: 875 GDSLRLQQVLINLGGNALKFTERGEVTLFIRLLAQDQQTVTLHFGVRDTGIGIAPEKQRA 934 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDT 813 F Q S R GTGLGL +++ V G + S P KG+L + PL Sbjct: 935 IFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVESEPGKGSLFHFTLTLPLAAA 994 Query: 814 -SHPHD 818 +HP D Sbjct: 995 DAHPDD 1000 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 33/391 (8%), Positives = 95/391 (24%), Gaps = 27/391 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D + +++ + G ++G + DP + L R + G+ Sbjct: 385 TDPQRRITWVNDGFERITGYRHDDVLGKVPGALLQCEKTDPRVIQAVHQALDRGLAFKGE 444 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G I++ P Y GF + + + + + Sbjct: 445 LLNRGRAGEEY--WIEMEIQPRYDAEHRLIGFM--AVESDITERKNTQHRLEAALRDNDA 500 Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L G ++ + + + + + Sbjct: 501 LLATLNVHGIIAITDRHRRLIEVNDAYCQITGYPREALLGQPPSIVNSGTQSPAFWRQAW 560 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317 + P + + + Y ++ + +Y+S + + + Sbjct: 561 ELLLAGQPWRGEVCNRARDGRVYWVDTTIAPFKDADGQIDKYISIQFDITQAKTLQTNLS 620 Query: 318 -GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAP 373 N + + + +S + + + D + TL+ Sbjct: 621 IARNQLLRATEVAELGVWSWSMADGTLIFDETMNAIYAIPPEMQDPHRLYAYWHTLIHPD 680 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + +A L R+ + + + + + GI Sbjct: 681 DVEEVDATLQETLRAGQGHVCRQRFRIRV----GDQERIIESAAVVEQQGIGDTLMLVGI 736 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + R + ++ +L + E + Sbjct: 737 NRDITRQRQAEATLQA--AKLAA--ENANQA 763 Score = 84.3 bits (207), Expect = 7e-14, Method: Composition-based stats. Identities = 48/415 (11%), Positives = 117/415 (28%), Gaps = 33/415 (7%) Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 RE+ G RG G + + R + + + + E Y + Q Sbjct: 97 DLPREYPGVRGIGFIQRVARADLSRFVQQARIDDKIDFTPHQIQPQR-DPELYLVKYVQP 155 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 P+ P LT + + + L Sbjct: 156 LTPNQAALGLDLRSEAVRWAGLQQAIDSGLPTLTGHIHLVQDSKQQPGALLYLPVYAVDA 215 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349 LQ + L + + ++ P Y+ G + Sbjct: 216 ALLQTPEQRRAALLG----------VIYSPLVIADLLNNIPE----YASGRVDI---ELY 258 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI--KPVMLYRSDRTCIAASARLHTIQWNR 407 + D++ S L + D++ + + + + + I Sbjct: 259 DTRGEMNSDNLIFDADGSKRLQHGIIDDHSPQEMRARVFIHTLPLSLPGRTMMLRISSTS 318 Query: 408 ENSLAMTF---IPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLCSILEAT 461 ++ + + + + + + +R + ++ +L + T Sbjct: 319 HFEASINYYSPWLLFTFGVLLSVLFTSLLRQQILGRFRAERLAQGMTADLERLALVARNT 378 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLD 520 S+ + + + + I N ++ GY +D+L K L+ T + + + L Sbjct: 379 SNAVILTDPQRRITWVNDGFERITGYRHDDVLGKVPGALLQCEKTDPRVIQAVHQALDRG 438 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571 L + L + + + + I+ + + DI+E K +++L Sbjct: 439 LA--FKGELLNRGRAGEEYWIEMEIQPRYDAEHRLIGFMAVESDITERKNTQHRL 491 >gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586] Length = 1045 Score = 343 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 183/378 (48%), Gaps = 13/378 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + +++ + +I+E + II+ +G+IL N+ +GY E+ L +P Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVVIIDSQGVILLWNKIAMTTYGYTSEEALGQPLF 206 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553 L+ P + LT L ++ +Q+L T++ + + I I +L Sbjct: 207 TLLKMALPPKLATVLTLPLQVEQQQSLNDAFFEADTYTRDGTWVPIDLGISIFELNGQCQ 266 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ + D++ K + +L+ A+ AE+ KS FLA +SHEIRTP+ AIIG S + Sbjct: 267 AAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKT 326 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + +Y + I S L+L I+ND+LD SKIE+GK+++ SLDE + Sbjct: 327 ELSA----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVSM 382 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731 + A +K + + S IPR ++ D + Q+ +N+++NA+ FT G + + Sbjct: 383 VTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVGE 442 Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + L+ V DTG+GMT + + F Q S + GTGLGL +++ +V+ Sbjct: 443 RQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELME 502 Query: 790 GKFYIFSTPAKGTLIEII 807 G+ + S P +G+ Sbjct: 503 GEISVISQPEEGSCFTFT 520 >gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1] Length = 1479 Score = 343 bits (881), Expect = 6e-92, Method: Composition-based stats. Identities = 108/531 (20%), Positives = 200/531 (37%), Gaps = 23/531 (4%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK 355 F + A + L P V +G + NP+F L Sbjct: 539 GSVFTFQDCSEQVKFEAQLFDQIQLFKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLYGAS 598 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 ++ +A L L + D ++ T + + + Sbjct: 599 --EEYLVATPLQALCAEKDRAQFELTHVF-----DEETKVLESKQSTYKMFDGSEHVLDS 651 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 I ++ E + + + + ++ +L ++ G + L Sbjct: 652 IGSVLRDRDGEAVGFILHLRDITEKLKTEEEIFKSQSRLSMAADSVGIGTWEWDVTTNQL 711 Query: 476 STNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + + ++FG+ ++ K ++ + ++ + Sbjct: 712 EIDEWMYRIFGFEECSIDETFDKWQSLLFPSDYERLLLEIDELAQEKCEFLDSDYRITRP 771 Query: 533 TKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + + + I + DI+ K+ + L AK+ AE S KSDFLA Sbjct: 772 DGQTRYIKVNAKITYNAIFDPIRMIGVNLDITTRKETELVLQKAKEQAELTSKAKSDFLA 831 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTPL ++G +E++ + P + + I SG +L+++N++LD SKI Sbjct: 832 TMSHEIRTPLNGVLGMAELMSHTDLSP----EQLTQLDVIRDSGEGLLELINEILDFSKI 887 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 E+G + L +L++A+ + L+ + A +K I + F P ++ D+ +KQI Sbjct: 888 EAGHLVLESIDFNLEKAIFDIAHLLIVKAEDKGIELLVEFEQRCPRMLVGDVYRIKQIIT 947 Query: 710 NILSNAIHFTPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++SNAI FT G I +S + V L V DTG+G+ K F Q +S Sbjct: 948 NLVSNAIKFTSEGEVVIRVSGKPLPSGGVDLRLSVSDTGIGIQESVQRNLFKAFTQADSS 1007 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSH 815 + GTGLGL + + + G + S KG+ + P S Sbjct: 1008 TTRQYGGTGLGLAITSQLTNLMDGTIEVESQLGKGSCFSVSMVLPKSHLSE 1058 Score = 99.3 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 83/280 (29%), Gaps = 10/280 (3%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 E + + S G + + N + L Y S +++ Sbjct: 419 TRELSHQAIRGIEAKQRSILASSHDGIIGIDSEGQITFVNQAVAKLVSY-SQEELVGRPF 477 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + K D + D+ R + ++A++F ++ Sbjct: 478 VECFYSVDKNGDRYTPCVISTAILDKK--DVQDRRVYLIKKSGQAIAISFSVATVTDEND 535 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + ++ ++ S+ + + ++ + G+I N A L+ Sbjct: 536 RYQGSVFTFQDCSEQVKFEAQLFDQIQLFKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLY 595 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G E ++ P + + LT + + + K + + L I Sbjct: 596 GASEEYLVATPLQALCAEKDRAQFE--LTHVFDEETKVLESKQSTYKMFDGSEHVLDSIG 653 Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 L + L + DI+E + + ++ ++ Sbjct: 654 SVLRDRDGEAVGFILHLRDITEKLKTEEEIFKSQSRLSMA 693 Score = 75.4 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 6/147 (4%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++ ++ + + + SIL ++ DGI I+ EG I N+AV+KL Y E+++ +P Sbjct: 417 ELTRELSHQAIRGIEAKQRSILASSHDGIIGIDSEGQITFVNQAVAKLVSYSQEELVGRP 476 Query: 497 FTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552 F + + LD + ++ K + +++ + + + Sbjct: 477 FVECFYSVDKNGDRYTPCVISTAILDKKDVQDRRVYLIKKSGQAIAISFSVATVTDENDR 536 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKI 577 T D SE + + +L ++ Sbjct: 537 YQGSVFTFQDCSEQVKFEAQLFDQIQL 563 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 36/379 (9%), Positives = 105/379 (27%), Gaps = 22/379 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTW 143 ID+ G + +++ + K + +++G + + + + +L +++ Sbjct: 448 IDSEGQITFVNQAVAKLVSYSQEELVGRPFVECFYSVDKNGDRYTPCVISTAILDKKDVQ 507 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G + I + + N + G A + Sbjct: 508 DRRVYLIKKSG--QAIAISFSVATVTDENDRYQG--SVFTFQDCSEQVKFEAQLFDQIQL 563 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL- 262 F L V + I HL ++ + ++ L Sbjct: 564 FKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLYGASEEYLVATPLQALCAEKDRAQFELTH 623 Query: 263 ---TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG- 318 + +Q + + +++ L++ E+ ++ H + +E Sbjct: 624 VFDEETKVLESKQSTYKMFDGSEHVLDSIGSVLRDRDGEAVGFILHLRDITEKLKTEEEI 683 Query: 319 ---ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 ++ D I + + N + + ++ I+ L P Sbjct: 684 FKSQSRLSMAADSVGIGTWEWDVTTNQLEIDEWMYRIFGFEECS-IDETFDKWQSLLFPS 742 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + ++ L + + + R I + + N + + G+ Sbjct: 743 DYERLLLEIDELAQEKCEFLDSDYR---ITRPDGQTRYIKVNAKITYNAIFDPIRMIGVN 799 Query: 435 PEDVDTRINKRKMEIEVMQ 453 + + + ++ Q Sbjct: 800 LDITTRKETELVLQKAKEQ 818 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 14/199 (7%), Positives = 57/199 (28%), Gaps = 11/199 (5%) Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457 + ++ + + + + + ++ + + + +L ++ Sbjct: 98 DSYVMRCDDQIIGVLICKGITGKA----LTALTSLCSKTLEDYEASKAAKAQSTELRNMT 153 Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + +A N + N A + G + + + + + Sbjct: 154 HMMNNLPLSVAYYNTDLNYEFMNHAYQNVLGLEDGEWKGLSVPDVIT-DNFESVQPLIER 212 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 + + L K+ + + K + ++ Y +++ D + +++ + L Sbjct: 213 VRNEGKVDELIKVKPIADESIKYVHAYYA-SRVEDDELTGYFVSLQDQTSFRRTLDTLKA 271 Query: 574 AKKIAEKESSHKSDFLARV 592 I + L + Sbjct: 272 LHLITSDSRLSLDEKLQNI 290 >gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 814 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 107/559 (19%), Positives = 204/559 (36%), Gaps = 29/559 (5%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + N + Q + S + S S + + E V+ Sbjct: 8 GKDQLLEERNARLRAEALLLEKEQLIIQLSQQNESLHTQLSSLDDLKQELHYVQEIVNNA 67 Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 F+ G Y NP+ L + + D ++ V Sbjct: 68 QDIVFISDYQGIFRYINPAAAQLLGFAMDEMSGKHFSALIREDYAEIIRAQYRDQVKNRL 127 Query: 389 SDR-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + W + + + + I + R ++ Sbjct: 128 ASSYLEFPVKNAEEREMWLGQQVSFVYHGD--------KLFEAHSIARDITTLRTAGERL 179 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + SI+E G+ ++ I+ ++ GYP E+++ K Sbjct: 180 RKSEEKYRSIMENMELGLLEVDSTAKIIRAYPRFCEMVGYPEEELVGKDPKALFSP--QG 237 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISE 563 ++ E + +++ K ++ I + + DI+E Sbjct: 238 FLDRAQQEEVKFLKGKSVIWEAPLRKKNGSIMWTLINNTPIYNDQGALVGTLGIHLDITE 297 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K + L ++ AE+ + FLA +SHEIR P+ +I+G + ++ + + Sbjct: 298 QKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPINSIVGMTNLLYDTYL----SEEQ 353 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +EY N + S +L+ +V+D+LDISKIE GKM E E + +++ Sbjct: 354 LEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKTFEFRLSQRP 413 Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEEV 737 I + + ++P+ +D + QI +N+++NA FT G IS + + Sbjct: 414 IQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEEG---TISCLAEAKFIDQQQWI 470 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V+DTG+G+ L + F Q + +++ +GTGLGLP+ K +V+ G + ST Sbjct: 471 EFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGNIKVQST 530 Query: 798 PAKGTLIEIIFPLYDTSHP 816 P GT I+ P+ P Sbjct: 531 PGVGTTFNILLPIEPALEP 549 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 21/253 (8%), Positives = 67/253 (26%), Gaps = 11/253 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144 + D G + I+ + +G +M G + + + D +K + Sbjct: 71 VFISDYQGIFRYINPAAAQLLGFAMDEMSGKHFSALIREDYAEIIRAQYRDQVKNRLASS 130 Query: 145 GKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 E +++ ++ + + F I ++ ++K Sbjct: 131 YLEFPVKNAEEREMWLGQQVSFVYHGDKL-----FEAHSIARDITTLRTAGERLRKSEEK 185 Query: 204 FSHLHE-IKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKY 259 + + E ++ G V+ K + + ++ + + ++ Sbjct: 186 YRSIMENMELGLLEVDSTAKIIRAYPRFCEMVGYPEEELVGKDPKALFSPQGFLDRAQQE 245 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + S+ + N + + N+ L + Sbjct: 246 EVKFLKGKSVIWEAPLRKKNGSIMWTLINNTPIYNDQGALVGTLGIHLDITEQKLLQVDL 305 Query: 320 NLTPETVDKCPIP 332 T + ++ Sbjct: 306 ERTRQEAEQARDA 318 >gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681] gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681] Length = 600 Score = 343 bits (880), Expect = 6e-92, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 170/404 (42%), Gaps = 30/404 (7%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 ++ ++ + + + ++ + + L S++ + GI +I+ I Sbjct: 221 VQRRDEVGQLGEAINRMADSLQNQM--KTIRDNEDLLQSVMSNMTGGILMIDASECIALV 278 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NR ++ G + + KP+ + + + S+ R+ L EE+ Sbjct: 279 NRESERMLGVVGKRVTDKPYHELKKHYELTKLIEG-----SIQRRERLHGEVHLYNPEER 333 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++ L + + DI+ ++ + + +S+F+A VSHE Sbjct: 334 IVLLDGVPMYEDEGGYRGMLFLLQDITAIRRLE--------------NMRSEFVANVSHE 379 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 ++TP+ A+ GF+E + G + I + ++ D+L++SKIES + Sbjct: 380 LKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDESERLNRLIGDILELSKIESKRS 437 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L PV + + + + A +KRI + + + + AD ++QI LN+LSN Sbjct: 438 TLDCSPVHVSSFIESLLEKLNNVAAKKRITLHMDIPDEL-FMEADEDKLQQIFLNLLSNG 496 Query: 716 IHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 I++T GG++ I E+V+ V DTG+G+ +L + + F ++ + Sbjct: 497 INYTLDGGKVKIKVLTIQRENDTEKVVFTVSDTGIGIPKKDLPRIFERFYRVDKGRSRNS 556 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL + K +VD + G + S GT + PL Sbjct: 557 GGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELPLLQQEE 600 Score = 39.2 bits (90), Expect = 2.8, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 15/168 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 IDA + ++ E + +G ++ ++ + I ++R+ +G+ Sbjct: 269 IDASECIALVNRESERMLGVVGKRVTDKPYHELKKHYELTK--LIEGSIQRRERLHGEVH 326 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L+ E + L +P+Y G+RG + +RL+ S Sbjct: 327 LYNPEERI----VLLDGVPMYEDEG---GYRGMLFL------LQDITAIRRLENMRSEFV 373 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 F++ ++ + S + + + L Sbjct: 374 ANVSHELKTPIAAVKGFAETLLGGGVKDEETARSFLQIIYDESERLNR 421 >gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O] Length = 1072 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 181/378 (47%), Gaps = 15/378 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ +I++ +AI++ I N ++GY E+ + Sbjct: 149 EIELRTADLKASEELSRTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENIL 208 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553 L + P ++H L+ L+L + +E +TKE ++ + + I +L + Sbjct: 209 TLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACH 268 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +L + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ AIIG S + Sbjct: 269 AALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 328 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y + I S L+L I+ND+LD SKIE+GK+++ LD+ Sbjct: 329 DLTP----KQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSM 384 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 + A EK + + PR +L D + QI +N+++N++ FT G +I +S H Sbjct: 385 VTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKG-EITVSVHHI 443 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ R+ DTG+GMT+ +++ F Q S + GTGLGL + + +V+ Sbjct: 444 RNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELM 503 Query: 789 MGKFYIFSTPAKGTLIEI 806 G+ + S KG+ Sbjct: 504 GGQIRVESEAGKGSHFIF 521 >gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42] gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42] Length = 593 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL +IL + +DG+ IN +G IL TN + + + N Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P ++ + Q +E G + L + + D++E + Sbjct: 304 PPEAKELFQNAVNTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++ESG LH+E V+L E + + A EK + Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVS 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + P + D ++Q+ N++ NA+ T SGG + I+ + + + ++D+G Sbjct: 464 LTEDISVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDG-LKIDIKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S+ KGT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTTFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|115377643|ref|ZP_01464838.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] gi|115365352|gb|EAU64392.1| two-component sensor histidine kinase [Stigmatella aurantiaca DW4/3-1] Length = 593 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 94/513 (18%), Positives = 190/513 (37%), Gaps = 34/513 (6%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362 + A E E ++ P + + G L Y N + T ++ + Sbjct: 84 ALLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPSLE 143 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + V T +W+ + + + Sbjct: 144 VFLKVVHPADREHMRREWTEAVRQVSRMEREFRMRRHDGTWRWHLGRA-------VPERD 196 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAV 481 + + + D + + +E + + L+AT D + + E + N Sbjct: 197 GTGRLVGFIAVATDIDDKKRAEATLE----RFKATLDATLDCVLMFEPEHLTLTYANVGA 252 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +K G E ++ + L + S + T ++ + + Sbjct: 253 TKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPS-HTYSTTHRRRDGTEIPV 311 Query: 542 RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++++ + + DI+E K+ + L S K FLA SHE+RT Sbjct: 312 EVVLQYVAAGGGPGRFVSVARDITERKRAEEAL-------LLASEAKDAFLAAASHELRT 364 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL A G + + + G G + I+R + + +V DLLDIS++++G+++L Sbjct: 365 PLAAAKGHA-HLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLD 423 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E L + E + + + +R + + D + Q+ N+LSNAI + Sbjct: 424 LERFDLGTLIRETCDRMGVLSQLHP--LRVELQEQLEGLW-DRGRLDQVLTNLLSNAIRY 480 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P GG++++ E V L V+D GVG+ + + FG+ S + G GLGL Sbjct: 481 SPEGGEVLVKAA-ADGEGVQLSVKDCGVGIPPEKQGLIFERFGRAHGS---KYGGLGLGL 536 Query: 779 PLAKAMVDANMGKFYIFST--PAKGTLIEIIFP 809 +++ +V+ + G+ ++ S G+ + P Sbjct: 537 TISQGIVEQHGGRIWVDSQGCAGDGSTFHVWLP 569 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 58/245 (23%), Gaps = 6/245 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 W A G L +++ + G A + V + + +++ + Sbjct: 113 MWAAGADGKLNYVNQVWREYTGLEAEEPSLEVFLKVVHPADREHMRREWTEAVRQVSRME 172 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +GT + A+P GF + A +R Sbjct: 173 REFRMRRHDGT--WRWHLGRAVPERDGTGRLVGF--IAVATDIDDKKRAEATLERFKATL 228 Query: 205 SHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + Y R + + + E D+ + L Sbjct: 229 DATLDCVLMFEPEHLTLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQ 288 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S E H + ++S + +E L Sbjct: 289 SGEQPSHTYSTTHRRRDGTEIPVEVVLQYVAAGGGPGRFVSVARDITERKRAEEALLLAS 348 Query: 324 ETVDK 328 E D Sbjct: 349 EAKDA 353 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 14/238 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTLWP 151 L + K +G +++G R+ +V D + I L+ TT Sbjct: 244 TLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRR 303 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +GT + V + L + F + E K Sbjct: 304 RDGTEIPVEVVLQYVAAGGGPGRF-----VSVARDITERKRAEEALL-------LASEAK 351 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + + K+ E K + + +T L + Sbjct: 352 DAFLAAASHELRTPLAAAKGHAHLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLD 411 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 L+ ++ GTL + + LS + + +D+ Sbjct: 412 ISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQLHPLRVELQEQLEGLWDRGRLDQV 469 >gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 963 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 130/706 (18%), Positives = 247/706 (34%), Gaps = 51/706 (7%) Query: 146 KTTLWPIEGTNLYVPIDLAALP----IYSRNRE------------FSGFRGFGI---VHV 186 ++P+EG + +DL + P + R G GF VHV Sbjct: 126 IRLIYPLEGNTAALGLDLRSRPDQASAADQARRDRRAVLNGPIQLVQGGCGFAARFPVHV 185 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 R + R G G + P + + + + Sbjct: 186 ERPGAEERFWGLVSALIDCEQLYRDSGLLETGTTLEVAMRGRDGDPDSDVFFGRAGIFDE 245 Query: 247 YAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + L + + P L + + Sbjct: 246 DPVLIELPLPHGSWRIAAIPHGGWPAHAANVWTLRLALLIVLLLVLLPAMALARTASTTR 305 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + E T + + G + +N + + + + G Sbjct: 306 ALSQRTAEALSLTEATLEATDNGI---LVIDLAGRVVSSNQRVIDMWRIPH--ALLETGD 360 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + +L + V R AS+R + + + Sbjct: 361 DAQILTHVIDQLADPEPFVRKVRELYEHPDASSRDTLLFRDGR----VFARFSHPQRVGS 416 Query: 426 ENMPQNGIEPEDVDTRINKR-----------KMEIEVMQ---LCSILEATSDGIAIINRE 471 + + + D ++ ++E Q L +L A D + + + + Sbjct: 417 AVVGRVWSFLDVTDQTRAEQNVRELSRQLSEELERSEQQRYLLQCLLSAIPDAVWMKDPQ 476 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G+ LS N +++ G V+ I+ + E+ Sbjct: 477 GVFLSCNPEFAQMLGQDVDRIIGTSDDDYFPPEVAEAFRADDRRAAESTTPIRCEEWIDY 536 Query: 532 STKEEKLLSLRI-IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + ++L + + DI+ +L A+ A + S KS F Sbjct: 537 VSDARRVLWATVKSAVRAEDGRLLGVLGIARDITSQHTVLTELEEARNAALQASEAKSRF 596 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTPL AIIGFS+++ PL + ++I SG +L+++ND+LD++ Sbjct: 597 LAHMSHELRTPLNAIIGFSQMLDMGALDPLT-AQQQTAVSHIRDSGRHLLELINDILDLA 655 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 +IESG+ L+ + + LD + E ++L + A+ +RI I + + AD ++Q+ Sbjct: 656 RIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGL-HVYADRTRLRQVL 714 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 LN+ SNAI + GG++ I + E V +RV DTG G+ E+ +PF ++ +++ Sbjct: 715 LNLTSNAIKYNRLGGRVTIDVEP-AGEWVRIRVSDTGAGIDESLREEIFQPFQRL-GAEK 772 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-PLYDT 813 EGTG+GL + K +++ G S P +G+ P++ Sbjct: 773 TAIEGTGIGLIICKHLIEVMGGSIDFDSVPGQGSRFWFELRPVHPE 818 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 19/243 (7%), Positives = 53/243 (21%), Gaps = 8/243 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144 W D G + E + +G ++IG D + + Sbjct: 470 VWMKDPQGVFLSCNPEFAQMLGQDVDRIIGTSDDDYFPPEVAEAFRADDRRAAESTTPIR 529 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + + + + + + + G G I + + Sbjct: 530 CEEWIDYVSDARRVLWATVK-SAVRAEDGRLLGVLG--IARDITSQHTVLTELEEARNAA 586 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYP 260 E K + + + + +++ + Sbjct: 587 LQASEAKSRFLAHMSHELRTPLNAIIGFSQMLDMGALDPLTAQQQTAVSHIRDSGRHLLE 646 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L+ + +NL+ + S+ + + A + Sbjct: 647 LINDILDLARIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGLHVYAD 706 Query: 321 LTP 323 T Sbjct: 707 RTR 709 >gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 667 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N +F T + LL + I + Sbjct: 13 IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 66 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + PE + + + + +R++ + ++ + Sbjct: 67 KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 118 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +++ +G++ N A + FG + ++ L + SL Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569 ++ L + + + + + + + + D++E ++ + Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + Y + + Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 293 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +++D+LD+S + GK+ L E + L E V EA++ +L A K ++ Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 353 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +L D ++Q+ N+LSNAI FTP+ G+I + + +++ V D+G G+ Sbjct: 354 VPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 412 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L F Q + + G GLGL + + +V+ + G+ S KG + Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472 Query: 809 P 809 P Sbjct: 473 P 473 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 92 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + +++ + + D ++ L + + Sbjct: 268 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + L + + + + P+ Sbjct: 328 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 386 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 387 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 506 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 549 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 ++ + ++ + E E D P+P +V G + + N ++ Sbjct: 84 EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++I+ G + D+ L S + A L + + Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249 Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 + +I +TN A + G + L ++ + Y + + + Sbjct: 10 DYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEWFDRYGHVARTGNR---IHFEMQ 65 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + S+ P + ++ DI+E K+ + +L+ ++ Sbjct: 66 AKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSA 114 >gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 902 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 162/392 (41%), Gaps = 17/392 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGY 487 + + ++ + + + E IA+ +GI N+A L+GY Sbjct: 354 AESLTLDIARRTQAEKALLESESRFRKLFEQVP-AIAVQGYGMDGIARYWNQASENLYGY 412 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++ + T + + K+ + + Sbjct: 413 SADEAIGAKLTDLIIPPEMRTDVEAAMRSMGETKIPIPASELTLMRKDGSRVVVFSSHAI 472 Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + D++ K+ + L K AE + KS+FLA +SHEIRTP+ ++ Sbjct: 473 VEKAGGEPELFCVDIDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVM 532 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ + Y + + N + ++ D+LD+S++E+GKM + P + Sbjct: 533 GMLQLLETTPL----DAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHI 588 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 + + L + A K +++ A ++P IL D ++Q+ N++ NA+ FT G Sbjct: 589 QDIIDSVTGLFAVTARNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERG- 647 Query: 724 QII-----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++ +S V L V DTG+G+ L + +PF Q+ NS +G GLGL Sbjct: 648 RVEMDISALSAKDEDTCRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGL 707 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V G I S P +GT + ++ PL Sbjct: 708 SIVHRLVALMAGTISIESAPGEGTSVHVVLPL 739 Score = 46.2 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 29/300 (9%), Positives = 75/300 (25%), Gaps = 26/300 (8%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 +S D + + + L+SE+ F G + ++ G Sbjct: 354 AESLTLDIARRTQAEKALLESESRFRKLFEQVPAIAVQGYGMDGIARYWNQASENLYGYS 413 Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-----TWYGKTTLWPIEGTNLYVPIDLA 164 A + IG +L D+ + + + ++ + TL +G+ + + + Sbjct: 414 ADEAIGAKLTDLIIPPEMRTD--VEAAMRSMGETKIPIPASELTLMRKDGSRV---VVFS 468 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 + I + F + + +L ++ K + + Sbjct: 469 SHAIVEKAGGEPEL--FCVDIDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRT 526 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 P + M T + L + D + + Sbjct: 527 ------PINGVMGMLQLLETTPLDAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKME 580 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 ++ +Q+ + ++G L P + + Sbjct: 581 IREAPFHIQDIIDSVTGLFAVTAR-------NKGLILECRLAPDMP-GILLGDEMRIRQV 632 >gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 648 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 94/481 (19%), Positives = 189/481 (39%), Gaps = 32/481 (6%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N +F T + + LL + L I + Sbjct: 30 IRTTNGAFERYTGLSTNAL---NVSIRDLLPE---HEQEWFDRYGLVARTGNRIHFEMQA 83 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + PE + + + + +R++ + ++ + Sbjct: 84 KALKR--------WYSVDAFRVGRPEQGRVAILFMDITERKRVERELAESEARFSALADG 135 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +++ +G++ N A + FG + ++ L + SL Sbjct: 136 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSDLLHPDDLPTFQ--FELAASLQ 193 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569 ++ L + + + + + + + + D++E ++ + Sbjct: 194 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 253 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + G+P Y + Sbjct: 254 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--EEGHPTYKG-LSV 310 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +++D+LD+S + GK+ L E + L E V EA++ +L A K ++ Sbjct: 311 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELH 370 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +L D ++Q+ N+LSNAI FTP+ G+I +S + +++ V D+G G+ Sbjct: 371 VPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIE-RDDGHLVVSVCDSGDGIA 429 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L F Q + + G GLGL + + +V+ + G+ S KG + Sbjct: 430 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 489 Query: 809 P 809 P Sbjct: 490 P 490 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 49/463 (10%), Positives = 118/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 109 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 167 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 D+ + + L+ Q +G + I++ A P YS + Sbjct: 168 TVSAWSDLLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 225 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 226 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 284 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ H + +++ + + D ++ L + + Sbjct: 285 TTILGWSELLLQRVEEGHPTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 344 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + L + + + + P+ Sbjct: 345 LVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIKF-TPAH 403 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 404 GRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 463 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 464 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 523 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 524 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 566 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 11/173 (6%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 + + ++ + E E D P+P +V G + + N ++ Sbjct: 101 EQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 160 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++I+ G + D+ L S + A L + + Sbjct: 161 G------LDISSGTVSAWSDLLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 213 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 214 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 266 >gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134] gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134] Length = 1290 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 106/539 (19%), Positives = 194/539 (35%), Gaps = 18/539 (3%) Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + + + E L N S E+ ++ ++ Sbjct: 608 AEETVKLQYLQIEMQNQELQATNEELRQTNEVLFSTMEQLRESEQRLSLATLSAKMGIWD 667 Query: 338 HG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 N + L K D A P D + L + Sbjct: 668 WDLLNNHLVWDKQMFELYGCKPGD-FPNAYDAWEKHLHPD--DKKQVYLDSLLAREGKAE 724 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + N + + + + GI + + + + + L Sbjct: 725 Y--NTEFRVCHPNGNIRHIKGFGKVVFDDHAQPVRMIGINWDITTQKRAEEDLTNQKRIL 782 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 IL+ I I + EG ++ N+A + + ++IL K + Sbjct: 783 EQILDTLPINIYIKDDEGRLMFLNKATCQTYRIT-KEILGKTDAEIFPEYLAEAFVKDDM 841 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSH 573 + + T E+ LL + +I + Y L DI+ K+ + +L Sbjct: 842 LVRAGTKPGTWEEQISWQHLNIDLLVGKKLISFEKNKAPYILGYSLDITARKRFERELIT 901 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 AK+ AE+ + K FL+ +SHEIRTP+ A+IG + V+ + +E + S Sbjct: 902 AKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENK----PRVDQLENLKILKFS 957 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L ++ND+LD +KI++GK+ L E + A EK I ++ S N Sbjct: 958 AQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSFAFTAQEKNIQLKFSTDTN 1017 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMT 749 IP ++ D + Q+ N+++NAI FT G + + T + ++ V+DTGVG+ Sbjct: 1018 IPHKVIGDPVRLTQVLTNLMNNAIKFTLKGEVKLMLQLITQNNRQVQLRFTVKDTGVGIP 1077 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + F Q + GTGLGL + K +++ + ++ S KG Sbjct: 1078 KEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQIHLESEENKGAKFYFDL 1136 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 54/547 (9%), Positives = 144/547 (26%), Gaps = 67/547 (12%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY-G 145 D + L S + + +G + ++L ++ I + +Q + Sbjct: 251 RFDRNHQLIYTSPSIERILGYTLQERKKIKLTQIAHPDDAHWLLQKIQENTAKQQKYSTY 310 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G Y+ +++ A + N ++ G + + +++F Sbjct: 311 VFRARHKQGH--YIWLEVVANAFFDSNGQYEGA--ISSARDVSERMEAEKKLQANEERFR 366 Query: 206 HLHEIKKGHSS-VEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKY 259 ++ L + ++V + D + K Sbjct: 367 LAQNFANIGIWEWTPTNNEMLWSPQTNYLLGLYHQVGKPSFEVFMKAVHPDDQAMVQAKM 426 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + Y K ++ + L + + + Sbjct: 427 QHSVNTVKKYELEHRVVWQDGTIYWVKSQGNVQRDQYGNVMKMLGVMQNITQRKVDEHKL 486 Query: 320 NLTPET-------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + +T +D+ I + GN+ YAN +F ++ Y + + D Sbjct: 487 KSSHKTLSDFKMALDEATIVATIDLQGNITYANDNFATISGYATHEL------TGRHYDV 540 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + + + + N Sbjct: 541 LIPKKQALSSEALNTVQSGKVWQGET--NNVHKSGKQY-WLKTTIIPFLNDRKLPFQYMI 597 Query: 433 IEPEDVDTRINK--------------RKMEIEVMQLC-------SILEATSD-------- 463 I + D + + ++++ +L S +E + Sbjct: 598 ICMDITDHKKAEETVKLQYLQIEMQNQELQATNEELRQTNEVLFSTMEQLRESEQRLSLA 657 Query: 464 ------GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 GI + L ++ + +L+G D + YL +L Sbjct: 658 TLSAKMGIWDWDLLNNHLVWDKQMFELYGCKPGDFPNAYDAWEKHLHPDDKKQVYLDSLL 717 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573 + + + + ++ K + DI+ K+ + L++ Sbjct: 718 AREGKAEYNTEFRVCHPNGNIRHIKGFGKVVFDDHAQPVRMIGINWDITTQKRAEEDLTN 777 Query: 574 AKKIAEK 580 K+I E+ Sbjct: 778 QKRILEQ 784 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 31/316 (9%), Positives = 100/316 (31%), Gaps = 29/316 (9%) Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L Y +PS + Y ++ + L D+ + + Sbjct: 253 DRNHQLIYTSPSIERILGYT----LQERKKIK--LTQIAHPDDAHWLLQKIQENTAKQQK 306 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 S + + + + + + + + + + + ++K++ + Sbjct: 307 YSTYVFRARHKQGHYIWLEVVANAFFDSNGQYEGAISSARDVSERMEAEKKLQANEERFR 366 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNH 511 + GI + + + L G + + KP F + + +++ Sbjct: 367 LAQNFANIGIWEWTPTNNEMLWSPQTNYLLGLYHQ--VGKPSFEVFMKAVHPDDQAMVQA 424 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569 + ++ + LE + + + +++ + + M +I++ K +++ Sbjct: 425 KMQHSVNTVKKYELEHRVVWQDGTIYWVKSQGNVQRDQYGNVMKMLGVMQNITQRKVDEH 484 Query: 570 KLSHAKKIAEKESSHKSDF--LARVSHEIRTPLT-------AIIGFSEV-IKNQRFGPLG 619 KL + K + +A + +++ +T I G++ + + + L Sbjct: 485 KLKSSHKTLSDFKMALDEATIVATI--DLQGNITYANDNFATISGYATHELTGRHYDVLI 542 Query: 620 NPRYI---EYANYIDR 632 + E N + Sbjct: 543 PKKQALSSEALNTVQS 558 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 60/154 (38%), Gaps = 9/154 (5%) Query: 438 VDTRINKRKMEIEVMQ---LCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + E+ + L IL E +SD I +R ++ T+ ++ ++ GY +++ Sbjct: 218 AEQKEALKNTQKELKKNVILYQILTENSSDLIERFDRNHQLIYTSPSIERILGYTLQERK 277 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + T + + + E + ++ + K+ + L ++ S+ Sbjct: 278 KIKLTQIAHPDDAHWLLQKIQE-NTAKQQKYSTYVFRARHKQGHYIWLEVVANAFFDSNG 336 Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + D+SE + + KL ++ + Sbjct: 337 QYEGAISSARDVSERMEAEKKLQANEERFRLAQN 370 >gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6] Length = 1072 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 181/378 (47%), Gaps = 15/378 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ +I++ +AI++ I N ++GY E+ + Sbjct: 149 EIELRTADLKASEELSRTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENIL 208 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553 L + P ++H L+ L+L + +E +TKE ++ + + I +L + Sbjct: 209 TLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACH 268 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +L + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ AIIG S + Sbjct: 269 AALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 328 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y + I S L+L I+ND+LD SKIE+GK+++ LD+ Sbjct: 329 DLTP----KQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSM 384 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 + A EK + + PR +L D + QI +N+++N++ FT G +I +S H Sbjct: 385 VTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKG-EITVSVHHI 443 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ R+ DTG+GMT+ +++ F Q S + GTGLGL + + +V+ Sbjct: 444 RNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELM 503 Query: 789 MGKFYIFSTPAKGTLIEI 806 G+ + S KG+ Sbjct: 504 GGQIRVESEAGKGSHFIF 521 >gi|32471016|ref|NP_864009.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1] gi|32396718|emb|CAD71683.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1] Length = 1170 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 108/743 (14%), Positives = 240/743 (32%), Gaps = 44/743 (5%) Query: 92 HGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G L +++ K I N + G + ++ +D + + ++ + + Sbjct: 311 DGTLTQMNAAGLKMIEANPTANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDII 370 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + G+ ++ + A+P+ + E + A + +++F L + Sbjct: 371 GLRGSRRHM--ETHAVPLSLTSGE---TVQLAVTRDITERKRSEATLRENERRFRALTQA 425 Query: 211 KKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + S ++Y H DD + K + E+ S Sbjct: 426 TSDIVFRMNADWSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEKQSF 485 Query: 270 PEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326 E E I+ + +++ E+ + +E ++ +T+ Sbjct: 486 YELEHRVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTLLT 545 Query: 327 --DKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 ++ P+ ++ A P+F + D E + T+ S+ Sbjct: 546 VIEQSPLGIYLVDGDFKIAQVSLGAGPAFQNVQPVIGRDFEE---VMHTIWPPEFASEAV 602 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 I L + E+ + + Sbjct: 603 RIFRHTLKTGEPYVSPGLTEKRKDLGETESYEWQVNRITLADGSYGVVCYFF----DTTR 658 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + ++ + + S G N+ + G E++ + Sbjct: 659 LQQAADALRESEVRFRMLADNMSQLAWTCCDLGECNWYNQRWYEYTGCTFEEMQGWGWRQ 718 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + + + + + E ++ + + + Sbjct: 719 VHHPDHVDRVVERIQRAATAG--EVWEDTFPLKGRDGQYRWFLSRAVPIRDEEGTIVRWF 776 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T D++E ++ + L K +FLA ++HE+R PL I +++ Sbjct: 777 GTNTDVNELRETQQLLHD-------ADRRKDEFLAMLAHELRNPLAPIRSGLDLLA---- 825 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + + + V+ +V+DLLD+S+I GK+ L E + V +AI V Sbjct: 826 -IADDDEHRDVVRVMQEQVTHVVRLVDDLLDVSRIMRGKVELRKERIEFQSTVRKAIDAV 884 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + + + + AD + Q+ N+LSNA + G I +S + NE Sbjct: 885 RDVIESHGHSLTITLPEKTVWLEADPVRIVQVLENLLSNATKYMDGSGAIELSASVK-NE 943 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++++D G+G+ L + F Q S G G+GL L K +++ + G + Sbjct: 944 SLFIQIKDEGIGIDQEFLPNIFELFAQSDRSLDRSKGGLGIGLTLVKQLLEMHGGNIHAE 1003 Query: 796 S-TPAKGTLIEIIFPLYDTSHPH 817 S KG+ I P+ P+ Sbjct: 1004 SDGLGKGSSFHIELPIASPPEPN 1026 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 49/410 (11%), Positives = 118/410 (28%), Gaps = 9/410 (2%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + ++ RA K++ + L + G S+ ++ F LR + V L + Sbjct: 30 IAESNDQRRAHLKQVLDRQHDLVTVDGGKSAWQQLTQGRFDAVVAGFDLREVSGVKLLAQ 89 Query: 246 YYAHKDDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 AH + S Q+ F + L Sbjct: 90 TRAHAELRGVPFVLVADEASPIDPTTWQQVFEFGRSDILCSPINEHELLARVDSIIRRAR 149 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 +N + + + + S + Y + + + + KS+ D Sbjct: 150 VKNESADMLQRQKSRLQMALLASRMVAVEWDISADTVLY-SENAIEIFGIKSLSDHATGP 208 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L D+ + + + + I+ + + + + + Sbjct: 209 TARKL----VHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWIEERGYVATDAS 264 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + R ++ ++ L +I + T + I ++ +G + N A K+ Sbjct: 265 GKPTKLIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKM 324 Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 P ++ + + + S LE +G + + Sbjct: 325 IEANPTANVAGNSVYELIAPEFLDCFREFNERVCS-GHSGVLEFDIIGLRGSRRHMETHA 383 Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + L DI+E K+ + L ++ + SD + R+ Sbjct: 384 VPLSLTSGETVQLAVTRDITERKRSEATLRENERRFRALTQATSDIVFRM 433 >gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus sp. JDR-2] Length = 614 Score = 343 bits (880), Expect = 7e-92, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 146/395 (36%), Gaps = 23/395 (5%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 E + + + E E +L SIL SDG+ + G ++ NR Sbjct: 236 GDDEIGRLSSAFNDMTIRLKEALSVNEEENEKLASILSNMSDGVIAADENGKVIVWNRRS 295 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ + L L + + EE +L + Sbjct: 296 QEMLDVRTCE--GCSLPELLGMPVQK--YRELQNGREQTVILPRNEEEADMDDEEGILRV 351 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + D++E ++ + + F+A VSHE+RTP Sbjct: 352 TFTPIHRRDKGITGTIAVLQDVTEQEKLE--------------QSRRQFVANVSHELRTP 397 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT I ++E + + + I ++ +V DLL +S+++S + L Sbjct: 398 LTTIKSYAEALNDGALDE--RELSERFVGVIRNETERMIRLVTDLLHLSRLDSNQAPLRR 455 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 ++ E + E +K IL ++ D + Q+ N++SNAI +T Sbjct: 456 RKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAWLDRDQIDQVLDNLISNAIKYT 515 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 GG I +S + + V+DTG+G+ +L + F ++ ++ GTGLGL Sbjct: 516 LEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFDRFYRVDKARSRNMGGTGLGLS 575 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +A+ +V A+ G + S GT + P+ Sbjct: 576 IAREIVKAHGGTISLKSELNDGTTVTFTLPVLQEE 610 >gi|114048722|ref|YP_739272.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890164|gb|ABI44215.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1118 Score = 343 bits (880), Expect = 8e-92, Method: Composition-based stats. Identities = 104/517 (20%), Positives = 207/517 (40%), Gaps = 23/517 (4%) Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 LS E+ ++ + G + N + + + + + Sbjct: 270 LSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGENV---KK 326 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + ++ + I + R Q +S+ + Sbjct: 327 IVPESIRPHHDGYLARYINTREAQIIGTGREVEAQHKAGHSVPVRLSIGHVMQGKAH--Y 384 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFG 486 G + +++++ + S++ GIA + EG ++ + AV + G Sbjct: 385 FVGFLSDLSLRNEMEQELKNNEAKFRSLITNIP-GIAYRCKSTEGWPMVFISEAVLNITG 443 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 YP ED F + I + T + ++ L Sbjct: 444 YPAEDFELPHPKRFFSDLYYP---DDIESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGN 500 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E K + L AK AE+ ++ ++ FLA +SHEIRTP+ A Sbjct: 501 YILDETSNEVWIDGFLMDITERKVMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMNA 560 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ + + + I+RS ++ ++ND+LD +K++ GK+ L Sbjct: 561 IIGFSDILLESVL----DNEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKLELENRVF 616 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 L + + IS + L A ++R+ + A ++ + ++Q+ +N++ NA+ FT Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGNAVKFTCE 676 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G ++ +S ++ V + DTG+GMT +L + + F Q S + GTGLG ++ Sbjct: 677 G-KVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTGLGTTIS 735 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 K +V+ G+ ST +G+ PL +S P + Sbjct: 736 KQLVELMGGQLEAESTLGQGSTFRFTIPLQPSSEPLE 772 Score = 45.4 bits (106), Expect = 0.040, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 69/243 (28%), Gaps = 20/243 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY-- 144 ID G + +++ + +G +++G + + I P + ++ + + Sbjct: 295 IDGQGIIVNVNKAVTTILGWSPAELLGENVKKIV-PESIRPHHDGYLARYINTREAQIIG 353 Query: 145 --GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + G + VP+ L+ + + F GF + + N+ K + Sbjct: 354 TGREVEAQHKAGHS--VPVRLSIGHVMQGKAHYFVGF-----LSDLSLRNEMEQELKNNE 406 Query: 202 KKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEK 258 KF L + E + + ++ + L D+ + Sbjct: 407 AKFRSLITNIPGIAYRCKSTEGWPMVFISEAVLNITGYPAEDFELPHPKRFFSDLYYPDD 466 Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ++ + + + ++ + + + + + Sbjct: 467 IESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGNYILDETSNEVWIDGFLMDITERKVME 526 Query: 317 EGE 319 + Sbjct: 527 QDL 529 >gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris str. B100] gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. campestris] Length = 702 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 107/572 (18%), Positives = 208/572 (36%), Gaps = 44/572 (7%) Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 P + H + + S S E + + P D G + E Sbjct: 2 RARCAPADDIGHGFIRSSSALASPVDPDSSTSALSPESIVAASAPVAEPTLDSG--MYRE 59 Query: 325 TVDKCPIPF----FVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D F V+ N +F T V ++ ++ Sbjct: 60 IFDNVDAGFCIIDMVFEGNRPTDYIFRVTNEAFQRYTGLSEVANV-------SMRSLRAD 112 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + I + + + PE + Sbjct: 113 HEQEWFDRYGHVALTGNRIHFEMQAKALNR--------WYSVDAFRVGPPELKRVAVLFM 164 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + +R++ + ++ + + +++ +G++ N A + FG + Sbjct: 165 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGTVS 224 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 ++ L V SL+ ++ L + + + + + + Sbjct: 225 AWSELLHPEDVPVFQ--FELAASLEEQRGLHALVRARRHDGQWRWIEMTATPRYSADGRF 282 Query: 556 LTMH----DISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + D++E + Q A+ AE + K +FLA +SHE+RTPLT I+ Sbjct: 283 IGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTIL 342 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G+SE++ + G+P Y + I S +++D+LD+S + GK+ L E + L Sbjct: 343 GWSELLLQRV--EEGHPNYKG-LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDL 399 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 E V EA+ + A K +++ +L D ++Q+ N+LSNAI FTP+ G+ Sbjct: 400 AEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGR 459 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I ++ H + I+ VRD+G G+ + L F Q + + G GLGL + + + Sbjct: 460 IDVTVEH-DDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQL 518 Query: 785 VDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815 V+ + G+ S KG + P + Sbjct: 519 VEMHGGQVGATSGGRGKGATFTVRLPEHQPDQ 550 Score = 73.5 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 48/462 (10%), Positives = 122/462 (26%), Gaps = 48/462 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 163 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGVDISSG 221 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q + +G + I++ A P YS + Sbjct: 222 TVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRHDG--QWRWIEMTATPRYSAD 279 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 280 GRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 338 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288 + +++ H + + +++ + + D ++ L + Sbjct: 339 TTILGWSELLLQRVEEGHPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 398 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + + E ++ L + L + F+ + + P+ Sbjct: 399 LAEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKF-TPAH 457 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G+++ + + + Sbjct: 458 GRIDVTVEHDDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQ 517 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P + +Q + + + Sbjct: 518 LVEMHGGQVGATSGGRGKGATFTVRLPEHQPDQAKRPRRELRRRLMSEQIVEARALNGLR 577 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREG 472 + Q L +LE + +D +A+I+ G Sbjct: 578 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRG 619 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 58/239 (24%), Gaps = 11/239 (4%) Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 ++V++++ D + + + E Y+ Sbjct: 89 NEAFQRYTGLSEVANVSMRSLRADHEQEWFDRYGHVALTGNRIHFEMQAKALNRWYSVDA 148 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346 + + + ++ + E E D P+P +V G + + N Sbjct: 149 FRVGPPELKRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 208 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 ++ S LL + L A + + Sbjct: 209 AYGEFFGVDISS--GTVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRA-----RRH 261 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 262 DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMA 320 >gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 771 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 136/680 (20%), Positives = 251/680 (36%), Gaps = 71/680 (10%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 P L L H V + ++ P + +++ + Sbjct: 92 ADRTATPGQLQGALQGLIPAWGFAAGRHIIVVDANQRVIARVPPNATIGDASRILEVLGA 151 Query: 247 YAHKDDVLKTEKYPLLTSE-----------ESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 LT +LP Q +L ++ + Sbjct: 152 TQPLTTSGLQSGVVDLTLPSGRTIHAVQRIVRALPGQVVVIQEDLGSIWGSNTALSITLS 211 Query: 296 SKESFEYL--------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYAN 345 + F L A D +D + + G + + + Sbjct: 212 ATTGFVVLILGFAFHWQSTRAREGDAINDAVRGRIDTALDSGRCGLWDWDLSRGRI-FWS 270 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 S + +S D+ G ++ L+ + + ++L I + Sbjct: 271 RSMFTMLGLESRSDLLTFGEVNALVKSDDIDLFAIANQLIL-----GEITQIDHTFRMLH 325 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + + GI + + + + ++L +E + Sbjct: 326 ANGHWIWLRVRCEIGEGGGDAGLHLIGIAVDITEHKSLAERTVEADLRLRDAIETIPEAF 385 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + + E ++ N +L P + + +E + T Q Sbjct: 386 VLWDAENRLVLCNSHFQRLHQLPDSAVTPGTSYDTVIEVGSMP---EARTRSPECGGAQL 442 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA---------- 574 + + L + ++ Y DI+ K ++KL Sbjct: 443 GARTFEAQLDNGQWLHIS---ERRTKDGGYVAVGTDITRIKDHEHKLIDNDLRLRATVAD 499 Query: 575 -------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 K AE + KS FLA +SHE+RTPL AIIGFSE+ Sbjct: 500 LKISQVKLERQAVQLADLARKYAEEKYRAEDANQTKSKFLANMSHELRTPLNAIIGFSEI 559 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+G+M L EP+ +S Sbjct: 560 MGSGMFGRLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEPLDFAGTLS 619 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E++ +V A K++ + I ++AD R+VKQI +N+LSNA+ FTP GGQI + Sbjct: 620 ESLRVVSGRAENKQLELHADIEQGI-SVIADRRAVKQILVNLLSNAVKFTPEGGQITVRG 678 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 ++ ++L + DTG+G+ L K +PF Q+ + G+GLGL +AK++ + + Sbjct: 679 RARAD-SIVLMIADTGIGIAPQSLRKLGQPFEQVESQLTKSYHGSGLGLAIAKSLTNLHG 737 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G + S +GT++ ++ P Sbjct: 738 GSMRLRSQLGQGTVVRLVLP 757 >gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus 10329] Length = 873 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 172/376 (45%), Gaps = 12/376 (3%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 L S+ + L TK + + + + + + + DI+ Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSRRPYWVELELSPVFDENGELLRFIAVERDIT 352 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +S N ++ I+ND+LD SK+E+GK+ L E L V +L A++K Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + ++ D + QI LN++ NA+ FT G +++ + + V Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESEHGF-DFSV 526 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L M F Q+ S R EGTGLGL ++K ++ G+ + S KG Sbjct: 527 SDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKG 586 Query: 802 TLIEIIFPLYDTSHPH 817 + L S PH Sbjct: 587 SCFSFSLQLPKRSQPH 602 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148 G + ++ + +++G ++ D N + ++ + + Sbjct: 257 PDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +V ++L+ P++ N E R + + K Sbjct: 317 NYTKSRRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E + + + G + + N +F LT+Y + + + G LL D + Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A +L +S R+ + +R + ++ E + +E + D Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSRRPY-WVELELSPVFDENGELLRFIAVERDITD 353 Query: 440 TRINKRKMEIEVMQ 453 R ++++ + + Sbjct: 354 RREMEKRLSSALDK 367 >gi|296137724|ref|YP_003644968.1| sensory box histidine kinase/response regulator [Salinibacter ruber M8] gi|295981893|emb|CBH22851.1| sensory box histidine kinase/response regulator [Salinibacter ruber M8] Length = 1501 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 132/748 (17%), Positives = 250/748 (33%), Gaps = 46/748 (6%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID G +++ + + G + + + D++D+ + D + Sbjct: 454 IDPESGAIRDANASAAEFYGYTDEEWERLHVQDLNDLPADEVAARRADA-EGGEQNRFIF 512 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G +++ + PI E +G F I+H + R +R +KF Sbjct: 513 PHRLKSGEAR--TVEVRSTPI-----EVNGTALLFSIIHDITAREEAREKLRRSRRKFKT 565 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L E + + I L + ++ T H DVL L Sbjct: 566 LFETSHDAIFLIDPEGHILDVNERATELFQMDRERLLKKTVPDLHPPDVLDRVASALEQV 625 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E E + + + + + E Sbjct: 626 EAGESVRLEIPIRRSDGTRLQTDISATPMQIGDRTLVQAVMRDITERKEAEEQLRRSEER 685 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 V+ P + G + Y NP+ + ++ ++I P + + Sbjct: 686 WRRLVESNRDPIQITVDGTIRYINPAGARIFGAEAPEEIIGRSPTD-FAAKPDVLEKLRA 744 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + L R + T + + + E +++ + + + R Sbjct: 745 RNRQLARGEPTE-PMEHTIQ--RLDGEERTVVSYAQPIEYKGESAAQTVI---RDVTEQR 798 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-F 500 + ++ +L A +AI EG I Sbjct: 799 EAEEELRHLKDFYEQVLNAMPIDLAIFGPEGRYEYVTPGAISDPERREHVIGMTDVEYAR 858 Query: 501 LEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEE---KLLSLRIIIKKLPFSSCYSL 556 + N L I R+T + + + + Sbjct: 859 VRGNDVDAARRRLETIRRVARTRETEQFEETIEDHNGNPQHFIRFVTPVVQDGAVVNVLG 918 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 +I++ KQ + KL AK+ AE + K FLA +SHE+RTPL A++G ++++ Sbjct: 919 YGLEITQRKQTEMKLRDAKEQAEASLAAKERFLATMSHEVRTPLNAVLGMAQLLARTDL- 977 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 Y I SGN +L +++ +LD +K+E+G+++L +++ Sbjct: 978 ---TEDQRSYLQSIRFSGNTLLTLLDTVLDFAKLEAGEVDLEQVAFDPVRLAHHVRDMLR 1034 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII------ST 729 A E + R +P ++ D V QI N+ SNA+ FT G +I S Sbjct: 1035 SKAKESDLDFRIEADPQLPTSVVGDAARVGQILTNLGSNALKFTDDGSVVICVEEGPASA 1094 Query: 730 THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPN----SQQIRGEGTGLGLPLA 781 + E + RV DTG+G+ + ++ F Q +++ EGTGLGL + Sbjct: 1095 APAEDSEAPTWITFRVEDTGIGIPPEQRDRIFGHFNQADTDTGETRKETREGTGLGLAIV 1154 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +VD G + STP +G++ + P Sbjct: 1155 QTLVDQMGGTIDLESTPGEGSVFTVRLP 1182 Score = 160 bits (406), Expect = 6e-37, Method: Composition-based stats. Identities = 41/509 (8%), Positives = 128/509 (25%), Gaps = 24/509 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G ++ + G +++G + H + H + + Sbjct: 325 IYRCDRDGCFTYVNPVATEVTGYAHDELVGQHFTALVHPDHRERLVHFYENQINEEIPDT 384 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + + + G + I + + +F Sbjct: 385 RREFPIVTAEGDKRWVSQQVQLVR-EDGAVVGVQ--AIARDITERKRAVEALQESEARFR 441 Query: 206 HLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + + + L + + Sbjct: 442 IMFERHSAPMLLIDPESGAIRDANASAAEFYGYTDEEWERLHVQDLNDLPADEVAARRAD 501 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGEN 320 + T + ++ N + Sbjct: 502 AEGGEQNRFIFPHRLKSGEARTVEVRSTPIEVNGTALLFSIIHDITAREEAREKLRRSRR 561 Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + F + G++ N L + ++ + Sbjct: 562 KFKTLFETSHDAIFLIDPEGHILDVNERATELFQMDRERLLKKT-------VPDLHPPDV 614 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + + + + Q + + + + Sbjct: 615 LDRVASALEQVEAGESVRLEIPIRRSDGTR---LQTDISATPMQIGDRTLVQAVMRDITE 671 Query: 440 TRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYP-VEDILRKPF 497 + + ++ + ++E+ D I ++ G I N A +++FG E+I+ + Sbjct: 672 RKEAEEQLRRSEERWRRLVESNRDPIQITVD--GTIRYINPAGARIFGAEAPEEIIGRSP 729 Query: 498 TVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 T F + + ++ + + +E EE+ + + S Sbjct: 730 TDFAAKPDVLEKLRARNRQLARGEPTEPMEHTIQRLDGEERTVVSYAQPIEYKGESAAQT 789 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + D++E ++ + +L H K E+ + Sbjct: 790 VIRDVTEQREAEEELRHLKDFYEQVLNAM 818 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 48/427 (11%), Positives = 116/427 (27%), Gaps = 41/427 (9%) Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 DL + ++ RN E G +H+ A + L + + ++ S Sbjct: 43 DLEGVAVWRRNEEGEG------LHLLHATPASYAEAEALPADHALVQRLRADASVSVHAS 96 Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 F + R + + P + Sbjct: 97 DPEFESLATGRAARGGALAALRLGDLGFLGLHDSRREAPFPP--RELRQLDPVLVKLEQA 154 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN- 340 + + L+ + + + + + Sbjct: 155 LRGGRSH-QQLEEEVER---------RVRTEEALRRSRSQLSALIQNLQDAVLLENEDRE 204 Query: 341 LFYANPSFLLLTKYK-SVDDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 L AN +F L + + + A L P + + Sbjct: 205 LLLANQAFCDLFEIPKPPEALPGADCGAVAEAAEDLFADPTALSDRVESILTA----GEP 260 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 ++A T+ N L + + E + + R +++ Sbjct: 261 VSAE----TLHLNDGRILE---RDYVPIDLDDETTGHLWKYRDVTEQRRLDARLQERERA 313 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 ++E+ SD I +R+G N +++ GY ++++ + FT + + + H+ Sbjct: 314 YRRLVESASDIIYRCDRDGCFTYVNPVATEVTGYAHDELVGQHFTALVHPDHRERLVHFY 373 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570 ++ ++ T + T E + ++ + DI+E K+ Sbjct: 374 ENQINEEIPDT-RREFPIVTAEGDKRWVSQQVQLVREDGAVVGVQAIARDITERKRAVEA 432 Query: 571 LSHAKKI 577 L ++ Sbjct: 433 LQESEAR 439 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 44/383 (11%), Positives = 116/383 (30%), Gaps = 18/383 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + ID G++ +++E + +++ + D+ +D + ++ + Sbjct: 574 IFLIDPEGHILDVNERATELFQMDRERLLKKTVPDLHPPDVLDRVASALEQVEAGESVRL 633 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +GT + D++A P+ +R ++ + +R ++++ Sbjct: 634 EIPIRRSDGT--RLQTDISATPMQIGDRTLVQA----VMRDITERKEAEEQLRRSEERWR 687 Query: 206 HLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYP 260 L E + + + Y + + + +A K DVL+ + Sbjct: 688 RLVESNRDPIQITVDGTIRYINPAGARIFGAEAPEEIIGRSPTDFAAKPDVLEKLRARNR 747 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEG 318 L E + P + ++ + T Y ++ S Sbjct: 748 QLARGEPTEPMEHTIQRLDGEERTVVSYAQPIEYKGESAAQTVIRDVTEQREAEEELRHL 807 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 ++ + ++ PI ++ G Y P ++ + + + + D Sbjct: 808 KDFYEQVLNAMPIDLAIFGPEGRYEYVTPGA--ISDPERREHVIGMTDVEYARVRGNDVD 865 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + R RT N + F+ + + G E Sbjct: 866 AARRRLETIRRVARTRETEQFEETIEDHNGNPQHFIRFVTPVVQDGA--VVNVLGYGLEI 923 Query: 438 VDTRINKRKMEIEVMQLCSILEA 460 + + K+ Q + L A Sbjct: 924 TQRKQTEMKLRDAKEQAEASLAA 946 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 11/192 (5%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + +E E + + QL ++++ D + + Sbjct: 139 RELRQLDPVLVKLEQALRGGRSHQQLEEEVERRVRTEEALRRSRSQLSALIQNLQDAVLL 198 Query: 468 INREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLE-----QNTPSVMNHYLTEILSLD 520 N + +L N+A LF P E + E P+ ++ + IL+ Sbjct: 199 ENEDRELLLANQAFCDLFEIPKPPEALPGADCGAVAEAAEDLFADPTALSDRVESILTAG 258 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + E + ++L + L + + D++E ++ +L ++ Sbjct: 259 EPVSAE---TLHLNDGRILERDYVPIDLDDETTGHLWKYRDVTEQRRLDARLQERERAYR 315 Query: 580 KESSHKSDFLAR 591 + SD + R Sbjct: 316 RLVESASDIIYR 327 >gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223] Length = 1576 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 104/384 (27%), Positives = 173/384 (45%), Gaps = 20/384 (5%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E EV++ ++LE++ + I++ GII N K+FGY +++ P + S Sbjct: 696 EKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYGRDELEGYPMHRLFLHDLES 755 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWK 565 + Q +E + +E + I + +++ +I++ Sbjct: 756 ARAKHAQWYELRPGNQRIE---IAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRL 812 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + L A + AE+ + KS FLA SHEIRTPL AI+G + ++ ++ Sbjct: 813 AFEQTLKKALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHR 868 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I SG +L IVND+LD+SKIE+ +M L P+ L E + E S+ A K + Sbjct: 869 LVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLD 928 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSNEE 736 + ++P ++AD ++QI N+LSNA+ FT G I + Sbjct: 929 FKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALHAEVIDKFIWKGAEKNI 987 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + DTG+G++ ++ KPF Q S R GTGLGL + ++ GK + S Sbjct: 988 VRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVES 1047 Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820 + +G+ PL S D I Sbjct: 1048 SEGQGSTFWTEMPLQTLSD-EDII 1070 Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 2/141 (1%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 REF G GFG + RV A ++ + + + + +++ I Sbjct: 83 RDIEREFPGALGFGFIR--RVPVAQEADFVAAARRDDFPNFTIRTLTPHDGDRFIIQYIY 140 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P+L+ E+ P LT+ + + L Sbjct: 141 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADSKPRRGVLILLPVYPS 200 Query: 289 FGTLQNNSKESFEYLSHRNHP 309 L+ ++ +L P Sbjct: 201 RMELKTPAEREKYFLGWAYAP 221 >gi|95928336|ref|ZP_01311084.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] gi|95135607|gb|EAT17258.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas acetoxidans DSM 684] Length = 867 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 101/519 (19%), Positives = 199/519 (38%), Gaps = 37/519 (7%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGL 366 E E +D F+ + + + + Y+ + Sbjct: 374 RKIAEQLIYEKEERLRLALDGSQDGFWDWDVSTGSNIVDERWCRMLGYEPDEIEHHIDVW 433 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L+ D +PV + + +Q Sbjct: 434 EKLVHPD---DMKKTRPVHERCMRGEISHFATEFRMRTKQGGWKWILGRGMVVSRDQQGN 490 Query: 427 NMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + G + + + + E + +IL + +DG+ + NR+ I NR Sbjct: 491 PLRLTGTHKDISQQKNTEHALKKALQESEEARNNINAILTSLTDGMIVSNRDHHITMINR 550 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KL 538 A KL + + ++ S + + T++ + +++E ++ Sbjct: 551 AAQKLLDVDEHQAIGQLVETIVDGQVFSDELGSI--LSQEKTTTTIDVEMMDQSRQEMRV 608 Query: 539 LSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + R S S + D++ + + + KS+F++ +HE+ Sbjct: 609 IQARFSAIYDNESIPSGAITLLQDVTRSR--------------EMARLKSEFISTAAHEL 654 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM- 655 RTPLTA++GFS+++ + EY I + IV+DLLD+S+IESG++ Sbjct: 655 RTPLTAMLGFSDLLLESPD--ISAEERREYLQIISSKSESLAAIVDDLLDLSRIESGRLI 712 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L + + L + + I + + + T + + D + Q+ N+LSNA Sbjct: 713 TLDQKQIPLQQTLVGLIEQYRDSCPDHQ--FITHLNDIDSMLYIDENKMAQVIENLLSNA 770 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + ++P GG I I T + + L + D G+GMT ++E+ F ++ + G G Sbjct: 771 VKYSPEGGNISIETRREPDGFL-LTIADQGIGMTPAQVERIFNKFYRVDGTNT-AVGGLG 828 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 LG+ +AK +V+A+ G+ ++ ST +GT + PL D S Sbjct: 829 LGMSIAKHIVEAHQGEIWVESTINQGTTSYVRLPLSDLS 867 >gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 582 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 184/372 (49%), Gaps = 5/372 (1%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ + I+ +DGI +I + + N +K+ GY DI+ +PF+ + Sbjct: 207 KRKTEMIKSASEKYSVIINKGNDGI-VIEQNDKLKFVNPRFAKMVGYDANDIIGQPFSEY 265 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTM 558 ++ + + + + ++ + + E ++ + I I S + Sbjct: 266 VQNHHKNELTNINRKLWKSEGPADHRYEISLISNENDIIPVEISSTILNYEGKSSIVSVI 325 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E KQ + +L AK AE ++ +S+F+ +SHE+RTPL + IGFSE++ + GPL Sbjct: 326 RDITEHKQHEQELLDAKVKAENANTAQSEFIHNISHELRTPLNSTIGFSEMMITEVLGPL 385 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + +Y N + SG +L ++N++L+ISKIE+G++ L + V + V + L+ Sbjct: 386 -NDKQKKYLNNVKISGKHLLSLINEILNISKIENGEVELELDEVDIYTTVEDVEMLMAPI 444 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 E + + + N+ + AD +KQI NILSNAI F+P II+ ++ Sbjct: 445 LAENKNELIVNIEANVGKFTADRLKLKQILYNILSNAIKFSPENENIIMDIKVID-GKLQ 503 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + D G G++ E +PF Q+ + + +GTGLGL + K V + GK +I S Sbjct: 504 TNITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGTGLGLTIVKRFVQLHKGKIWIDSEE 563 Query: 799 AKGTLIEIIFPL 810 KGT PL Sbjct: 564 GKGTTFCFTIPL 575 Score = 42.3 bits (98), Expect = 0.35, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 47/156 (30%), Gaps = 7/156 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKT 147 I+ + LK ++ K +G A +IG + H + +I L K + + Sbjct: 233 IEQNDKLKFVNPRFAKMVGYDANDIIGQPFSEYVQNHHKNELTNINRKLWKSEGPADHRY 292 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSH 206 + I N +P+++++ + + G ++ K + Sbjct: 293 EISLISNENDIIPVEISSTIL-----NYEGKSSIVSVIRDITEHKQHEQELLDAKVKAEN 347 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + + + + M +V Sbjct: 348 ANTAQSEFIHNISHELRTPLNSTIGFSEMMITEVLG 383 >gi|253700700|ref|YP_003021889.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] gi|251775550|gb|ACT18131.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21] Length = 1260 Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats. Identities = 115/828 (13%), Positives = 255/828 (30%), Gaps = 81/828 (9%) Query: 33 GFETEKSKKENPCHDSFEQ-----SNFTDQNQESVSNTNYLDSENTF-VFDPIPRTVRFT 86 G +K + ++ ++ F +E ++ + L S+ F + Sbjct: 323 GMTQQKEAAQPIGANTGDEIAVLRHAFDQLLKELIAQKSELKSQLDFSRILIDIIPIPVY 382 Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145 + D G ++ G +++G + DV D +LL+ Sbjct: 383 YK-DTFGRYLGCNQAFLDFNGITRDELLGKTVHDVVPSDLADQYHRSDEELLRAGGVQVF 441 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + G I + + G G + + + Sbjct: 442 EAKA--VNGRLTQRDITFFKTTFPASDGSRGGILGAML--DITEHKQAEEALQTQKEFAE 497 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------------MKNKVSSLTE 245 L + V ++ + S L + ++ L Sbjct: 498 SLVMNSTVPTFVLDHRHRVIIWNSALEALTGIKADDVLGLENLWKIFYETERPLLADLII 557 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 A D Y + + + + + +++ + L Sbjct: 558 DEALDDLSKHYGHYQQSPLISGGIQAEGWYRDPSGEGHYITISAAPIRDRNGILVGALQV 617 Query: 306 RNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 + + +D V + G + + NP+ + + + + Sbjct: 618 MEDITERKQAQDAHEKTRRQLQLILDAAGEGINGVDTQGKITFVNPAAADMVGWTQEELL 677 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + + + N ++ + + + + + + + Sbjct: 678 GQNQHA-LMHHSREDGSNFPVQECAIAAACHEGRPYKSEELFWRKDGTSFYVECNCSPLR 736 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + + I + + R+ + ++ +L + + I I + G I N Sbjct: 737 ED--GQLVGAVIIYKDMTERRLAEEQLL----KLSQAVMQSPVSIMITDTLGNIEFVNPR 790 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + GY ++++ + + T + L ++ + K Sbjct: 791 FTHVTGYEADEVIGRNPKLLQSGKTSPELYQGLWNTITSG--RVWTGELYNRYKSGATHW 848 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 I + S+ + M ISE K+ + +L A+K+ V+H+ Sbjct: 849 EHATISPIRNSAGTISHFMAFMESISERKKLEEQLRQAQKM-----EAVGQLAGGVAHDF 903 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 LT I+GF ++++ P G+P +E I + + + LL S+ K Sbjct: 904 NNILTVIMGFGQLLQ--HSLPAGDP-MLESMEQILDAADRATHLTRSLLAFSR----KQV 956 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + V L + + + + + + ++T F ++AD ++Q+ +N+ +NA Sbjct: 957 MLLHQVELSDLARKHAKFL-VRIIGEDVTLKTYFCEEKLMVMADSGQIEQVLMNLATNAR 1015 Query: 717 HFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 P GG++II T ++ V DTG GM +K +PF Sbjct: 1016 DAMPGGGELIIKTEAVQLDKAFHRLHGYGMPGRYALITVTDTGTGMDPETQQKIFEPFFT 1075 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G GTGLGL + ++ + G IFS GT I PL Sbjct: 1076 TKLP----GRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFSIYLPL 1119 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 80/257 (31%), Gaps = 15/257 (5%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 T Q P + ++ + + K +++ ++ +++ Sbjct: 317 FTEQIRGMTQQKEAAQPIGANTGDEIAVLRHAFDQLLKELIAQKSELKSQLDFSRILIDI 376 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + + G L N+A G +++L K + + + E+L Sbjct: 377 IPIPVYYKDTFGRYLGCNQAFLDFNGITRDELLGKTVHDVVPSDLADQYHRSDEELLRAG 436 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIA 578 Q E + ++ ++ M DI+E KQ + L K+ A Sbjct: 437 GVQVFEAKAVNGRLTQRDITFFKTTFPASDGSRGGILGAMLDITEHKQAEEALQTQKEFA 496 Query: 579 EK--ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 E +S F+ H II S ++ + +E I Sbjct: 497 ESLVMNSTVPTFVLDHRH------RVIIWNSA-LEALTGIKADDVLGLENLWKIFYETER 549 Query: 637 --VLDIVND--LLDISK 649 + D++ D L D+SK Sbjct: 550 PLLADLIIDEALDDLSK 566 >gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 678 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 97/518 (18%), Positives = 194/518 (37%), Gaps = 41/518 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYANPSFLLLTKYKSVDDIEIA 363 A + E F V G + N +F T + Sbjct: 23 AEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNAL---N 79 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + LL + L I + ++ + Sbjct: 80 ISIRDLLPE---HEQEWFDRYGLVARTGNRIHFEMQAKALKR--------WYSVDAFRVG 128 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 P+ + + + + +R++ + ++ + + +++ +G++ N A + Sbjct: 129 RPDQGRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 188 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 FG + ++ L + SL ++ L + + + + + Sbjct: 189 FFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQEQRGLRALVRARRHDGQWRWIEM 246 Query: 544 IIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARV 592 + + + D++E ++ + A+ AE + K +FLA + Sbjct: 247 TATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATL 306 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPLT I+G+SE++ + G+ Y + I S +++D+LD+S + Sbjct: 307 SHELRTPLTTILGWSELLLQRV--EEGHTTYKG-LSVIASSARAQKRLISDMLDLSSMLL 363 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 GK+ L E + L E V EA++ +L A K ++ +L D ++Q+ N+L Sbjct: 364 GKVQLEVESLDLAEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLL 423 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI FTP+ G+I +S + +++ V D+G G+ L F Q + + Sbjct: 424 SNAIKFTPAHGRIDVSIE-RDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHG 482 Query: 773 GTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 G GLGL + + +V+ + G+ S KG + P Sbjct: 483 GLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 46/463 (9%), Positives = 116/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 139 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 197 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 198 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 255 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 256 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 314 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288 + +++ H + +++ + + D ++ L + Sbjct: 315 TTILGWSELLLQRVEEGHTTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 374 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + + E + L + L + + + + P+ Sbjct: 375 LAEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIKF-TPAH 433 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 434 GRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 493 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 494 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 553 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+++ G Sbjct: 554 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALLDHRGH 596 >gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 592 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 82/390 (21%), Positives = 176/390 (45%), Gaps = 26/390 (6%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ + ++ +IN ++ E ++ +IL DG+ ++ +G I+ N A Sbjct: 224 DELGRLSRAFNNMADKLEAKIN--EISGEKNKIEAILRGMGDGVIAVDEDGKIILLNPAA 281 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++F E L K +E ++ + L T E T+ E+++ + Sbjct: 282 EEIFQLKEEKTLGK---YTMEVTRSHKLDDAIMASLKNGEDITEEIETIYPV--ERMIRV 336 Query: 542 RIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + K + D++E ++ + +++F++ VSHE+RTP Sbjct: 337 HVTPIKNDKTTERGAVAVLRDVTELRRLE--------------QIRTEFVSNVSHELRTP 382 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 LT+I G+ E + ++R G + I + + ++ DLL++S++ES + Sbjct: 383 LTSIKGYVETLLDERDCEPGVRE--RFLQVIKDETDRLERLITDLLNLSQLESASDSFDQ 440 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E V+L++ + ++ V A+ K I ++ +I I ++++ +N++ N I +T Sbjct: 441 ELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDNGIKYT 500 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 GGQ+ I + + V + DTG+G+ +L + + F ++ ++ + GTGLGL Sbjct: 501 SEGGQVKIKV-YEDEDRVWSEIIDTGMGIPEEDLPRIFERFYRVDKTRSRKLGGTGLGLS 559 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K +++ + G + S +GT P Sbjct: 560 IVKHILERHNGGIEVESKVEEGTKFIFWLP 589 Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 12/240 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + ++ + K +G +V+ +D + I LK + Sbjct: 268 VDEDGKIILLNPAAEEIFQLKEEKTLGKYTMEVTRSHKLD--DAIMASLKNGEDITEEIE 325 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + V + PI + G ++ + R + + H Sbjct: 326 TIYPVERMIRVHVT----PIKNDKTTERGA--VAVLRDVTELRRLEQI--RTEFVSNVSH 377 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E++ +S++ + ++ P +R + + + + + L T+ L E +S Sbjct: 378 ELRTPLTSIKGYVETLLDERDCEPGVR--ERFLQVIKDETDRLERLITDLLNLSQLESAS 435 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++ +N +N + + + + E L VD Sbjct: 436 DSFDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDN 495 >gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 660 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 97/522 (18%), Positives = 192/522 (36%), Gaps = 41/522 (7%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYANPSFLLLTKYKSVDD 359 P+ A + E F V G + N +F T + Sbjct: 1 PAAIAEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNAL 60 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + LL + I + ++ + Sbjct: 61 ---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQAKALKR--------WYSVDA 106 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 PE + + + + +R++ + ++ + + +++ +G++ N Sbjct: 107 FRVGPPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 166 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A + FG + + L + SL + L + + + Sbjct: 167 AYGEFFGLDISSGTVSAWRELLHPDDLPTFQ--FELTASLQEQHGLRALVRARRHDGQWR 224 Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDF 588 + + + + + D++E ++ + A+ AE + K +F Sbjct: 225 WIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEF 284 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTPLT I+G+SE++ + N + + I S +++D+LD+S Sbjct: 285 LATLSHELRTPLTTILGWSELLLQRVEEGQPNYKG---LSVIASSARAQKRLISDMLDLS 341 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 + GK+ L E + L E V EA++ +L A K ++ +L D ++Q+ Sbjct: 342 SMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVL 401 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNAI FTP+ G+I +S + +++ V D+G G+ L F Q + Sbjct: 402 WNLLSNAIKFTPAHGRIDVSIE-RDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTT 460 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 + G GLGL + + +V+ + G+ S KG + P Sbjct: 461 RQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 502 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 46/462 (9%), Positives = 118/462 (25%), Gaps = 46/462 (9%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 121 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 179 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q+ +G + I++ A P YS + Sbjct: 180 TVSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDG--QWRWIEMTATPRYSAD 237 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 238 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 296 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + + +++ + + D ++ L + + Sbjct: 297 TTILGWSELLLQRVEEGQPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 356 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---- 344 L + + E + L + L + + + + Sbjct: 357 LVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHG 416 Query: 345 --NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + S + V + G++ + + + Sbjct: 417 RIDVSIERDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQL 476 Query: 403 IQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KM 447 ++ + + +P +Q + + ++ Sbjct: 477 VEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLRL 536 Query: 448 EIEVMQ------LCSILE----------ATSDGIAIINREGI 473 Q L +LE + +D +A+I+ G Sbjct: 537 LAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 578 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 50/175 (28%), Gaps = 11/175 (6%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350 + + ++ + E E D P+P +V G + + N ++ Sbjct: 111 PPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 170 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 ++I+ G + D+ L S + A L + + Sbjct: 171 FFG------LDISSGTVSAWRELLHPDDLPTFQFELTASLQEQHGLRA-LVRARRHDGQW 223 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 224 RWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 278 >gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 771 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 128/686 (18%), Positives = 258/686 (37%), Gaps = 71/686 (10%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK- 239 G+V ++R + L L H V + ++ N+ Sbjct: 90 IGVVRLDRAASI-ERLQSLLPGLVPSWGIAAGRHVIVTGADQRVLARVPGDEGASAANRF 148 Query: 240 --VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + S T + L + + ++ L++++ Sbjct: 149 LDIISATPTLTKSSQQGVLSEITLPSGASALATLHTIKSLPGQVIIIQEDTGSILRSDAA 208 Query: 298 ESFEYLSHR----------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--G 339 + D + +++ + + G Sbjct: 209 LQITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRG 268 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + + + S L +S +D+ G ++ L+++ + ++ +D Sbjct: 269 RI-FWSQSMFTLLGLESRNDLLTFGEVNALVNSDDIDLFTIGDELIAGAAD-----HIDH 322 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 ++ + + + EN GI + + + + ++L +E Sbjct: 323 SFRMRHANGHWIWLRMRCELSQESPTENKHLIGIAVDVTEQKSLAERTVEADLRLRDAIE 382 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILS 518 + + + + ++ N +L P I + +E + + Sbjct: 383 TLPEAFVLWDSDNRLVLCNSHFQRLHKLPDSAIAPGTSYETVIEVGQMPEIRT--RQCDV 440 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA---- 574 + + L + ++ Y +I+ K + KL Sbjct: 441 GAGSPPGARTFEAQLDDGSWLHIS---ERRTKDGGYVAVGTNITRIKAHEQKLVDNDLRL 497 Query: 575 -------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAI 603 K AE+ + KS FLA +SHE+RTPL AI Sbjct: 498 RATVADLKISQVKLERQAIELADLARKYSEEKNRAEEANQAKSKFLANMSHELRTPLNAI 557 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFSE++ + FG LG+ +Y EY + I SG+ +L+++ND+LD+SKIE+G+M L E + Sbjct: 558 IGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEELD 617 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L + E++ +V A+ K + +R + IP I+AD R++KQI +N+LSNA+ FTP GG Sbjct: 618 LARTLGESLKVVAGRADNKHLELRAEIEDGIP-IVADRRAIKQILINLLSNAVKFTPDGG 676 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ + + + +++ + D+G+G+ L + +PF Q+ + G+GLGL +AK+ Sbjct: 677 RVTVRSRTLED-SIVMMIADSGIGIAPQSLRRLGQPFEQVESQLTKTYHGSGLGLAIAKS 735 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 + + G + ST GT++ + P Sbjct: 736 LTRLHGGSMRLRSTLGAGTVVMVTLP 761 >gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565] gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565] Length = 1413 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 102/596 (17%), Positives = 220/596 (36%), Gaps = 34/596 (5%) Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 P M + ++T+ +L+ + + ES + I Sbjct: 466 NAQPELLRIMDKLLLTITDEEW---QLLERRWLNVSVNIESDYTLIYKWLAIGGGALLVS 522 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYAN 345 S +E ++ P + S + N Sbjct: 523 GLLVMFWARSLRR----QIAQRKIAEDKLNEQLLFVQTLLNSLPTMVALRDSEQRITLCN 578 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 ++ + L + P+ N+ ++ L ++ Sbjct: 579 QAY-------RDAFLGAGSSSEELQNMPETLRNSVLEEERLVWQTGQ--DLEGAGSNLRA 629 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + + + + + + + + +L I ++ G+ Sbjct: 630 DGTPCHVIYAKR-PYRDPDGNMLGVLTVLTDVSRIKEAEERARQAENRLTQITDSMP-GV 687 Query: 466 A---IINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +G L ++ S++ G +++ + T + +++++ + Sbjct: 688 VYQYLWQGPGKGRFLYASQGASEILGASRQELFNAESGCEVFGFTEEALQDFVSKVANHA 747 Query: 521 LR-QTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKI 577 L+ + + L +R + + + DI+ KQ++ +L A+ Sbjct: 748 ETLAPLDLEVKVERPDGDRYLQVRGNFVRQEQQALILNGVIQDITALKQQEYELREARAY 807 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ +S FLA +SHE+RTP++ + G E+++ N + S N + Sbjct: 808 AEQAMQARSRFLATMSHELRTPISGMHGMLELLQMSEL----NDDQRFMVRNVVTSTNNL 863 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L +VND+LD SKIE+G++ L+++ L + +AI A+ K + + + +++P Sbjct: 864 LYLVNDILDFSKIEAGQLQLNYQSSRLQTVICDAIRGHAALAHNKGLNVVLEWEHHVPDW 923 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 D + Q+ N+L+NA+ FT GG I I ++ +E++ + V DTG+G+ + Sbjct: 924 ADIDGVRIGQVISNLLNNAVKFTEQGG-ITIRVSYL-SEQLTISVSDTGIGIAEEKQALL 981 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 PF Q+ + R GTGLGL + + +V G + S +G+ PL + Sbjct: 982 FTPFEQVESDINRRFGGTGLGLAICEQLVCKMGGALTLTSKAGEGSCFRFTVPLTN 1037 >gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 967 Score = 343 bits (879), Expect = 1e-91, Method: Composition-based stats. Identities = 107/587 (18%), Positives = 206/587 (35%), Gaps = 39/587 (6%) Query: 245 EYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + AH D +P L S + L L Sbjct: 259 DPAAHPDSGGAPAGHPPLASFLGVPLRQRGLALGLLALANKPGGYTDEDLLAAEALGLAI 318 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDD 359 + E V+ P FV Y +PS ++ Sbjct: 319 AEVLSRGRAEEALRASEEEHRTLVENLP-GVFVSKFDRDLRHTYVSPSVARISGLPQDHF 377 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + + A + +++ + + Sbjct: 378 LGRRPTETVWREMGFADRIEAAVERVFATGQGDGF-----QYSLPSDDGERHR-KVRTYP 431 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI-- 473 + + + D R+++ + + ++ +G + + G Sbjct: 432 DRVENGQVASVVAFSYDVTDLVEMGRELKASEERFRFLFDSMDEGFCLIEVLFDPAGRPV 491 Query: 474 ---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 L N A +K G + + + + + +EK Sbjct: 492 DYRFLEVNPAFAKQTGLIG--AVGRRMRELV-PEHEEHWFQIYGHVAATGQSVRVEKPAA 548 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 G + + P ++ D++E ++ + L AK+ AE + KS+FLA Sbjct: 549 GL---GRFYDVNAFRVGDPEQRRVAIFFTDMTERRRGEEALLQAKQEAEAANQAKSEFLA 605 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ I+G + + +P ++Y + D+S +L IVND+LD+SK+ Sbjct: 606 NMSHEIRTPMNGIMGMI-HLARLKS---ADPTILQYLDLADKSALHLLGIVNDVLDLSKM 661 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709 E+GK+ L P +L A+ + + A EK ++ A+++P ++ D ++Q+ Sbjct: 662 EAGKIRLAAAPFALRREFESAVEPLLVAAGEKGLVFEHGVADDVPDHVIGDAGRLRQVLT 721 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQI 763 N++ NA+ FT G +I + + ++ VRDTG+G+ L + + F Q Sbjct: 722 NLVGNALKFTGKG-RIEVRVALAAGAAEPGTRRLLFTVRDTGIGIPAKRLSRIFESFEQA 780 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +S GTGLGL ++K +V+ G+ S +G+ L Sbjct: 781 HSSAHALYGGTGLGLTISKRLVELMGGEIIAESREGQGSTFSFSITL 827 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 38/356 (10%), Positives = 79/356 (22%), Gaps = 31/356 (8%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DIL 125 SE F D +S + + G +G R + Sbjct: 333 ASEEEHRTLVENLPGVFVSKFDRDLRHTYVSPSVARISGLPQDHFLGRRPTETVWREMGF 392 Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF---- 181 + + G P + + + P N + + F Sbjct: 393 ADRIEAAVERVFATGQGD-GFQYSLPSDDGERHRKVRT--YPDRVENGQVASVVAFSYDV 449 Query: 182 -GIVHVNRVDNDPRALGKRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSP------- 230 +V + R + L L E+ + Y Sbjct: 450 TDLVEMGRELKASEERFRFLFDSMDEGFCLIEVLFDP-AGRPVDYRFLEVNPAFAKQTGL 508 Query: 231 --PPHLRMKNKVSSLTEY----YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 RM+ V E+ Y H ++ + + + F + Q Sbjct: 509 IGAVGRRMRELVPEHEEHWFQIYGHVAATGQSVRVEKPAAGLGRFYDVNAFRVGDPEQRR 568 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPIPFFVYSHGNLF 342 +F + + L + + N++ E + L Sbjct: 569 VAIFFTDMTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHLARLK 628 Query: 343 YANPSFLLLTKYKSVDDIEIAGGL-STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 A+P+ L + + G + L + + + A Sbjct: 629 SADPTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVE 684 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 15/147 (10%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVEDILRKPFTVF--- 500 E V L IL+ +S+ +A + + L+ N A +++FG + Sbjct: 20 EAVVSLLQGILDGSSELMAAHDPDFRCLAVNGAYREAFARIFGV--AIAVGTNLMAALAG 77 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-- 558 L + + + + + +E + I L T+ Sbjct: 78 LPEERTAGVRELFERARAGEAFSVVEG---FGDPGPERTWYEIRFVPLRRDGVRVGTIQY 134 Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSH 584 D++ + + L ++++ ++++ Sbjct: 135 LRDVTNRLRREEALRDREELSRRQNAL 161 >gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2] gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2] Length = 600 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 170/404 (42%), Gaps = 30/404 (7%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 ++ ++ + + + ++ + + L S++ + GI +I+ I Sbjct: 221 VQRRDEVGQLGEAINRMADSLQNQM--KTIRDNEDLLQSVMSNMTGGILMIDARECIALV 278 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NR ++ G + + KP+ + + + S+ R+ L EE+ Sbjct: 279 NRESERMLGVVGKRVTDKPYHELKKHYELTKLIEG-----SIQSRERLHGEVHLYNPEER 333 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 L+ L + + DI+ ++ + + +S+F+A VSHE Sbjct: 334 LVLLDGVPMYEDEGGYRGMLFLLQDITAIRRLE--------------NMRSEFVANVSHE 379 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 ++TP+ A+ GF+E + G + I + ++ D+L++SKIES + Sbjct: 380 LKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDESERLNRLIGDILELSKIESKRS 437 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 L P+ + + + + A +KRI + + + + AD ++QI LN+LSN Sbjct: 438 PLDCSPIHISSFIESLLEKLNNVAAKKRITLHMDIPDEL-FMEADEDKLQQIFLNLLSNG 496 Query: 716 IHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 I++T GG++ I E+V+ V DTG+G+ +L + + F ++ + Sbjct: 497 INYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGIPKKDLPRIFERFYRVDKGRSRNS 556 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL + K +VD + G + S GT + PL Sbjct: 557 GGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELPLLQQEE 600 >gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1300 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 133/721 (18%), Positives = 246/721 (34%), Gaps = 52/721 (7%) Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 ID ++ + G L + G + + A R + R Sbjct: 7 IDAPAPPASPIRTRVLLSGAFALIALLGVGFWSYVVWA-----DREQTLHHSREQAQST- 60 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 R+ + + + + + + + ++++L Sbjct: 61 ARLLQEHVRRTVATADLALSRARDLIRYHGLAGLDTNREAWITIRDMVDALPEIAALWID 120 Query: 247 YAHKDDVLKTEKYPLLTSEESSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 D +L + ++P + + + + S+ Sbjct: 121 GPAGDAILTSRQFPTPQVSAADRSFFKAHLDGTEFHVGERIAGRITGTEFFTVSRSIMVE 180 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + + D L +Y G P+ L + Sbjct: 181 GRFQGVVHTNVDLDYYRQLYESLDIGPGSAIALYRTDGKPVLRFPASEPLAGPDGPIVLR 240 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT----IQWNRENSLA----- 412 A +T ++ + + R + L W Sbjct: 241 HAAEAATETFEIDGTEAGTRRILSYQRVPDLPLVVFVALSEPTELAPWRERTIRGSILVA 300 Query: 413 --------MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-----MQLCSILE 459 + + + + ++D + + + E +L IL Sbjct: 301 LAVLACAGLAYAALRSLEREVAGRRRLADTNAELDAKKRELESANEAFASANRRLNLILR 360 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-----TPSVMNHYLT 514 + SD I ++R G++ N A S L GY E++L + + +T Sbjct: 361 SASDSICGVDRNGLVTFANPATSALTGYANEELLGGNLHELIHARRADGGHFPALECPVT 420 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571 E+L TK K + + L H+I+E K+ + + Sbjct: 421 EVLLSG-ESRRGLEDTYWTKGGKPFLVEYTASPMLADGKVEGAVLVFHEIAERKRAEAAM 479 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A+ AE S KS+FLA +SHEIRTP+ AI+G +++ R +Y + Sbjct: 480 QRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTG----RQADYVQKVR 535 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +L I+ND+LD SK+E+GK+ L LD+ + +V A EK I + S A Sbjct: 536 VSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSAAQEKDIDVLFSVA 595 Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVI-LRVRDTGV 746 ++P ++ D ++QI +N+ NAI FT +G ++++S + V+ VRDTG+ Sbjct: 596 PDVPLELVGDPLRLQQILINLAGNAIKFTETG-EVVVSVRLRTLADDGAVLDFSVRDTGI 654 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + E+ + F Q +S R GTGLGL + +V G + S P KG++ Sbjct: 655 GIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMNGAMDVESEPGKGSVFRF 714 Query: 807 I 807 Sbjct: 715 R 715 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 21/189 (11%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTI 106 D N E + L+S N F R + +D +G + + Sbjct: 328 ADTNAELDAKKRELESANE-AFASANRRLNLILRSASDSICGVDRNGLVTFANPATSALT 386 Query: 107 GNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKRQNTWYG-KTTLWPIEGTNLYV 159 G +++G L ++ D + ++L + G + T W G Sbjct: 387 GYANEELLGGNLHELIHARRADGGHFPALECPVTEVLLSGESRRGLEDTYWTKGGKPF-- 444 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 ++ A P+ + + G + H A +R K + Sbjct: 445 LVEYTASPML-ADGKVEGA--VLVFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANMS 501 Query: 220 EKYDIFSQQ 228 + Sbjct: 502 HEIRTPMNA 510 >gi|167034015|ref|YP_001669246.1| signal transduction histidine kinase with CheB and CheR activity [Pseudomonas putida GB-1] gi|166860503|gb|ABY98910.1| signal transduction histidine kinase with CheB and CheR activity [Pseudomonas putida GB-1] Length = 1371 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 120/789 (15%), Positives = 258/789 (32%), Gaps = 63/789 (7%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94 E E +++ H + + + + + D G Sbjct: 503 EVEPARRPGRLH-TPDTQAIRAKPKPKPLRKLSYAEIHHRALSRRTPPSLIV---DGDGN 558 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 + +S+ + + + + ++ L V L + + + I+ Sbjct: 559 ILHMSDGVGRFLRHAGGEVSPSLLNLVLTPLRPALRSSLLQAHNTGQPVSSGAVITTID- 617 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + V I + P + S + Sbjct: 618 -DQRVEIQVQVQPHQD------------------------------EPSGSECLLVVFQV 646 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + Q ++ ++ + + L+ S E E+ Sbjct: 647 READPHSPPAIQQTEGMVLNTLERELQRTRQQLQETIEQSDISSQELMASNEEMQAINEE 706 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-F 333 + T K+ ++ L + + D+ + + I Sbjct: 707 LRLASEELETSKEELQSINEELLTVNYELKTKVDET-----DKVNDYLSNLIASTQIATV 761 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 FV + ++ + P + VD ++ L+ P L+D+ +R Sbjct: 762 FVDRNLHIRWFTPGATAIFSILPVDTGRSLLDITHRLEYPGLADDARAVIERETTIEREV 821 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 I ++ + ++R + ++ + Sbjct: 822 I------------GQDQHWYLARLLPYRASEQNVDGTVLTFIDITESRAAEERLRQGEER 869 Query: 454 LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + + E+T D I +++ +G+I+ N + +FGY +++L + + + Sbjct: 870 MRLVAESTHDFAIILLDEQGLIIDWNTGAALIFGYAKDEVLGLHYALIFTEQDRENGEPE 929 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570 E+ + + K+ + +L S Y D++ K+ +++ Sbjct: 930 -RELRAARQHGRGQDERWHVRKDGSRFYCSGEVSRLKGSSLRGYVKIARDLTGHKRLQDE 988 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 S ++ S K +F A +SHE++ PL I ++ I + + N I Sbjct: 989 QSKRLAESQSSSHMKDEFFAVMSHELKHPLNLIQLNAD-ILRRIPSVTSTGMASKAVNVI 1047 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + I++DLLD+++I +GK+ L +PV L + ++ + + + Sbjct: 1048 REAVTSQARIIDDLLDVARIRTGKLKLKTQPVDLCAVLQGICAVACNEQRGRSVRLTLPA 1107 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + AD V+QI N+L+NA+ F+P+ G I++ T + L V D G+G+ Sbjct: 1108 DGEPVLVEADSTRVEQIIWNLLNNALKFSPADGDILLRLTRQDE-QARLEVIDQGIGLAE 1166 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 LE + F Q + R EG G+GL L + +V+A+ G + S +G I P Sbjct: 1167 DSLEGIFELFNQATPTGHGR-EGLGIGLSLVRQLVEAHGGAVSVESPGVGQGCTFVITLP 1225 Query: 810 L-YDTSHPH 817 L T P Sbjct: 1226 LCVYTQQPQ 1234 Score = 40.0 bits (92), Expect = 1.7, Method: Composition-based stats. Identities = 31/397 (7%), Positives = 86/397 (21%), Gaps = 13/397 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + + + G +++G+ + + +L + G+ Sbjct: 885 LDEQGLIIDWNTGAALIFGYAKDEVLGLHYALIFTEQDRENGEPERELRAARQHGRGQDE 944 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 W + + + G+ I + + + Sbjct: 945 RWHVRKDGSRFYC--SGEVSRLKGSSLRGY--VKIARDLTGHKRLQDEQSKRLAESQSSS 1000 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 +K +V + ++ S + A K + E Sbjct: 1001 HMKDEFFAVMSHELKHPLNLIQLNADILRRIPSVTSTGMASKAVNVIREAVTSQARIIDD 1060 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L + T L T+ + L+ D L + Sbjct: 1061 LLDVARIRTGKLKLKTQPVDLCAVLQGICAVACNEQRGRSVRLTLPADGEPVLVEADSTR 1120 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + + L ++ +L + D+ + + + S + Sbjct: 1121 VEQIIWNLLNNALKFSPADGDILLRLTRQDEQARLEVIDQGIGLAEDSLEGIFELFNQAT 1180 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++ + + + Sbjct: 1181 PTGHGREGLGIGLSLVRQLVEAHGGAVSVESPGVGQGCTFVITLPLCVYTQQPQVQGEAL 1240 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 +L T I +++ +L + +L Sbjct: 1241 PSEGRL------TGVRILLVDDSLDVLEV---MEQLL 1268 >gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans 91-118] Length = 648 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N +F T + LL + I + Sbjct: 30 IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 83 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + PE + + + + +R++ + ++ + Sbjct: 84 KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 135 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +++ +G++ N A + FG + ++ L + SL Sbjct: 136 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 193 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569 ++ L + + + + + + + + D++E ++ + Sbjct: 194 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 253 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + Y + + Sbjct: 254 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 310 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +++D+LD+S + GK+ L E + L E V EA++ +L A K ++ Sbjct: 311 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 370 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +L D ++Q+ N+LSNAI FTP+ G+I + + +++ V D+G G+ Sbjct: 371 VPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 429 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L F Q + + G GLGL + + +V+ + G+ S KG + Sbjct: 430 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 489 Query: 809 P 809 P Sbjct: 490 P 490 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 109 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 167 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 168 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 225 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 226 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 284 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + +++ + + D ++ L + + Sbjct: 285 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 344 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + L + + + + P+ Sbjct: 345 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 403 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 404 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 463 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 464 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 523 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 524 LLAVEDQPDMLDYLRRLLEEQGAEVVVAGSATDALALIDHRGH 566 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 ++ + ++ + E E D P+P +V G + + N ++ Sbjct: 101 EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 160 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++I+ G + D+ L S + A L + + Sbjct: 161 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 213 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 214 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 266 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 13/132 (9%) Query: 457 ILEATSDGIAIINR--------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 I G +I+ + +I +TN A + G + L ++ Sbjct: 5 IFHNIDAGFCVIDMVFDGEQAVDYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEW 63 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 + Y + + + + + S+ P + ++ DI+E K+ + Sbjct: 64 FDRYGHVARTGNR---IHFEMQAKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVE 119 Query: 569 NKLSHAKKIAEK 580 +L+ ++ Sbjct: 120 RELAESEARFSA 131 >gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 763 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 12/367 (3%) Query: 452 MQLCSILEATSDGIAII-NREGI-ILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPS 507 ++ +I+E + + N +G + + +++ FGY +D L + + + + Sbjct: 391 EEMNNIIEHSPVTVFKWKNEKGWPVELVSENITQ-FGYNADDFLSKQMDYADIIHPDDVG 449 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + L E L + + + +K ++ + + + +I++ Sbjct: 450 RVEDRLGESLKRHVPNFISQ-YRIISKSGEIFWVEEQTLSHADQNGDTKYLHGIIVNITK 508 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ ++ + AK AE + KS+FLA +SHE+RTPL +IIGFSE++ + G + N + Sbjct: 509 RKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDINN-KQ 567 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y + I G +L ++N++LDISK+ESGKM LH++ ++ +S+ + L+ A R Sbjct: 568 ERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAITNR 627 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I I T + I AD +KQI N+LSNAI FT G I I ++ + + ++D Sbjct: 628 IEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIF-DDKLMQICIKD 686 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ +EK +PF QI ++ + +GTGLGL L K V+ + G ++ S KG+ Sbjct: 687 NGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGKGSA 746 Query: 804 IEIIFPL 810 P+ Sbjct: 747 FTFTIPI 753 >gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1007 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 118/803 (14%), Positives = 264/803 (32%), Gaps = 93/803 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM--------------RLCDVSDILHIDPNNHIG 134 D G ++ + + +G A ++ R ++S L Sbjct: 51 TDERGVIQIFNIGAERMLGYAAADVLNKITPADISDPQELILRATELSAELETAIAPGFE 110 Query: 135 DLL---KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L+ R + T +G+ P ++ + + G+ G + R Sbjct: 111 ALVFKASRGIEDIYELTYIRKDGS--RFPAIVSVTALRNARGTVIGYLLIGTDNTARKQV 168 Query: 192 DPRAL-------------------GKRLDKKFSHLHEIKKGHSSVEKEKYD------IFS 226 + + ++KF+ + Sbjct: 169 EAERQHLLKEQEWTNQQLHQANLTLRESEEKFAVTLHSIGDAVIATDAAARVTLLNPLAE 228 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE---QEDFHTINLNQY 283 + + + + +K+ L T ++ + ++ Sbjct: 229 RLTGWTQAQASGRPVDEIFTIINKETRLSATVPVAETLAHGTIQGLANHTVVIARDGSEC 288 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV------YS 337 +++ + + + + + + Sbjct: 289 DIADSCAPIRDRDGQVIGAVLVFRDVTEEYAAQQALRDSTALIQTILNTVADGIITIYAR 348 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G + NP+ + Y ++ + LL D SD A Sbjct: 349 GGMIKTVNPAAERMFGYSGIELVGQNFS---LLIPELDQDQRNGSLEYYSASDEARAAGL 405 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 R + + M GI + + + + +I Sbjct: 406 GREVLGRRQDGSVFPMEM--AVSEMWLGGERYFTGILRDTTARKQAEEALLQAGALQSAI 463 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEI 516 + + + +G+I N ++ GY +++ K + L+ Sbjct: 464 FNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMNKVTPADISDSKEVIARAKALSLE 523 Query: 517 LSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559 L + E K+ + + L + Y L Sbjct: 524 LGTQIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQGVIIGYLLIGT 583 Query: 560 DISEWKQEKNK--------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 D + K+ + + L A++ A+K + KS+FL+ +SHE+R+PL AI+G Sbjct: 584 DNTARKRVEAERAVLDRALRDKNVELESARQAADKANLAKSEFLSSMSHELRSPLNAILG 643 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 F++++ + P + I G +L+++N++LD++ IESGK++L EP++L Sbjct: 644 FAQLM--ESGVPPPTATQKASIDQILHGGWYLLELINEILDLALIESGKLSLSMEPIALP 701 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + ++++ A + I I N + AD VKQ+ +N++SNAI + GG + Sbjct: 702 DVLLDCQAMIEPQAQKSDIRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRVGGTV 761 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ + + + + VRD+G G++ ++ + +PF ++ + EGTG+GL ++K +V Sbjct: 762 EVTCKKVAAQRLRISVRDSGEGLSAEKVTQLFQPFNRL-GQEVGSEEGTGIGLVVSKRLV 820 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 + G+ S G++ Sbjct: 821 ELMGGEIGAQSIVGTGSVFWFEL 843 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 18/184 (9%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + P+ PE + + + +IL + + + G+I N Sbjct: 5 DPIPDLPKAVAGTPEGLTEFRRQEALLKTGALQNAILNSANFSSIATDERGVIQIFNIGA 64 Query: 482 SKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------K 527 ++ GY D+L K + + L+ L + E Sbjct: 65 ERMLGYAAADVLNKITPADISDPQELILRATELSAELETAIAPGFEALVFKASRGIEDIY 124 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K+ + + L + Y L D + KQ + + H K E + Sbjct: 125 ELTYIRKDGSRFPAIVSVTALRNARGTVIGYLLIGTDNTARKQVEAERQHLLKEQEWTNQ 184 Query: 584 HKSD 587 Sbjct: 185 QLHQ 188 >gi|223940722|ref|ZP_03632560.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] gi|223890613|gb|EEF57136.1| multi-sensor hybrid histidine kinase [bacterium Ellin514] Length = 1463 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 99/746 (13%), Positives = 234/746 (31%), Gaps = 65/746 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 + +S + G + + + + + + + Sbjct: 613 EAEVLYVSPAYEEIWGRTRESLYQSPKAWMENIHPEDRQRVADAVEKKQVIGQYDEEYRI 672 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G I PI +R G+ + + + + Sbjct: 673 IRPDGEIR--WISDRGFPIKDETGHI--YRIAGVAQDITRRKQAEQAVQESQARLQAILD 728 Query: 210 IKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 ++ + + HL + + + + ++ Sbjct: 729 NSPNLVFMKDLEGRYLLVNRQFAKSFHLTREQIIGRMDTEFLPAAQAALYRGNDRKVLKQ 788 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L E T+ + L+++S + +E + + Sbjct: 789 GEL--MEFTETMENPHRISVVHKFPLRDSSGTIKALCGIATDITERILVEEQLRRSESLL 846 Query: 327 DKCP----IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + Y L +P+ L + + +S + G L + + Sbjct: 847 GHAQRIAGLGSWSYDFATRLVEWSPATLEIFRLQSGEF---PGTLEAFF--EMVHPEDRQ 901 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + I + + ++ + + G + ++R Sbjct: 902 GLIRAQEEALRGGKMIDQEYRIVLRDGSVRNVQERGEVVCDEHGVPLKRVGSILDVTESR 961 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ + + ++L+ D I + N ++ N++ +L+GY + + + T + Sbjct: 962 RKEQLLREQ----AALLDKAQDAILVRNMNDEVVYWNKSAERLYGYTMSEAAGRKITDLI 1017 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 ++ + +L+ TK + + + + Sbjct: 1018 Y-KDTTIFDETRQALLTKGE---WHGEIAQVTKSGREVLVEARWTLVRNDQGEPQSVLAI 1073 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+E K+ +N+ A+++ ++H++ L I+ E+++++ Sbjct: 1074 NTDITEKKKLENQFLRAQRM-----ESIGTLAGGIAHDLNNVLAPILMSCELLEHE---- 1124 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L + E + I D+V +L ++ G+ L +P L + + + Sbjct: 1125 LRDAEIREVISSIKTGAQRGADLVRQVLSFARGVEGR-RLALQPRHLIREIEQIMGETFP 1183 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSN 734 K I + S + ++ D + Q+ LN+ NA P+GGQ+ +S N Sbjct: 1184 ----KSIQVDVSPDPELWMVVGDPTQLHQVLLNLCVNARDAMPAGGQLTLSAGNVLREEN 1239 Query: 735 -----------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 V++RV DTG G+ EK PF G+GTGLGL A Sbjct: 1240 QLMAGLNSQATAYVVIRVADTGTGIPPELREKIFDPFFTTK----EVGKGTGLGLSTTLA 1295 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ ++ G ++ S P +G+ EI P Sbjct: 1296 IIKSHDGFIHVSSEPGRGSTFEIYLP 1321 Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats. Identities = 53/513 (10%), Positives = 141/513 (27%), Gaps = 38/513 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I+ G + E + + K +G + + ++ D ++ + + + + Sbjct: 359 IELDGRIVEGNPAVCKMLGYTCDEFVRLKPADFIHPDSMNLFYTFVQEVGQGRRFNCEAK 418 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--- 205 +GT +P+++ P R R IV ++ +++ Sbjct: 419 GVRKDGT--VIPVEVQGSPFSYRGRP----HLLSIVRDVSARRTAEESLRKNEEELRVTF 472 Query: 206 -------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 L + + + + A Sbjct: 473 ENAAISIALVNMAGHPVKCNPALEKFLGYSEKELRRMSFAEFTHPEDVEAD-----MVLY 527 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314 L+ ++ F N + ++ +E + A Sbjct: 528 RELMAGTRDHYEIEKRFIHRNGEIKWGRLTASLVRGAGQEPQYGIGMVEDITEYKRSRAE 587 Query: 315 FDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E E+ + + F++ + + Y +P++ + + Sbjct: 588 LRESEDRFKQLAENIQEVFWMANTVEAEVLYVSPAYEEIWGRTRESLYQSPKAW-----M 642 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + + + I+ + E ++ F ++ G Sbjct: 643 ENIHPEDRQRVADAVEKKQVIGQYDEEYRIIRPDGE-IRWISDRGFPIKDETGHIYRIAG 701 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + ++ ++ +L +IL+ + + + + + EG L NR +K F E I Sbjct: 702 VAQDITRRKQAEQAVQESQARLQAILDNSPNLVFMKDLEGRYLLVNRQFAKSFHLTREQI 761 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDL--RQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + + T FL ++ ++L T LR + Sbjct: 762 IGRMDTEFLPAAQAALYRGNDRKVLKQGELMEFTETMENPHRISVVHKFPLRDSSGTIKA 821 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 DI+E + +L ++ + Sbjct: 822 ---LCGIATDITERILVEEQLRRSESLLGHAQR 851 Score = 110 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 14/302 (4%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 + +N S + E + + G + Sbjct: 309 RLLNALAENISFAVESLEKEMERGRVEMALRMSEEQYRNVFETVAEGLTIIELDGRIVEG 368 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 NP+ + Y + + L A + ++ + + ++ Sbjct: 369 NPAVCKMLGYTCDEFV-------RLKPADFIHPDSMNLFYTFVQEVGQGRRFNCEAKGVR 421 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + I + R + + +L E + Sbjct: 422 KDG---TVIPVEVQGSPFSYRGRPHLLSIVRDVSARRTAEESLRKNEEELRVTFENAAIS 478 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQ 523 IA++N G + N A+ K GY +++ R F F E+++ Sbjct: 479 IALVNMAGHPVKCNPALEKFLGYSEKELRRMSFAEFTHPEDVEADMVLYRELMAGTRDHY 538 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKE 581 +EK + E K L + + + DI+E+K+ + +L ++ ++ Sbjct: 539 EIEKRFIHRNGEIKWGRLTASLVRGAGQEPQYGIGMVEDITEYKRSRAELRESEDRFKQL 598 Query: 582 SS 583 + Sbjct: 599 AE 600 Score = 97.0 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 51/529 (9%), Positives = 128/529 (24%), Gaps = 48/529 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW- 143 + D G ++ + K+ ++IG + L R N Sbjct: 733 LVFMKDLEGRYLLVNRQFAKSFHLTREQIIGRMDTEFLP--------AAQAALYRGNDRK 784 Query: 144 ---YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 G+ + N + + P+ + GI +R Sbjct: 785 VLKQGELMEFTETMENPHRISVVHKFPLRDSSGTIKAL--CGIATDITERILVEEQLRRS 842 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVL 254 + H I S + + + + E +D Sbjct: 843 ESLLGHAQRIAGLGSWSYDFATRLVEWSPATLEIFRLQSGEFPGTLEAFFEMVHPEDRQG 902 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + ++ + + ++ + + + + + S Sbjct: 903 LIRAQEEALRGGKMIDQEYRIVLRDGSVRNVQERGEVVCDEHGVPLKRVGSILDVTESRR 962 Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ +DK V + + + Y N S L Y + + Sbjct: 963 KEQLLREQAALLDKAQDAILVRNMNDEVVYWNKSAERLYGYTMSEA-AGRKITDLIYKDT 1021 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + D + + + + N E I Sbjct: 1022 TIFDETRQALLTKGEWHGEIAQVT--------KSGREVLVEARWTLVRNDQGEPQSVLAI 1073 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVED 491 + + + + + + ++ SI T G + ++ + + +L + + D Sbjct: 1074 NTDITEKKKLENQF-LRAQRMESI--GTLAGGIAHDLNNVLAPILMS---CELLEHELRD 1127 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILS-----LDLRQTLEKITLGSTKE---EKLLSLRI 543 + ++ + ++LS R L+ L E + I Sbjct: 1128 AEIREVISSIKTGAQRG-ADLVRQVLSFARGVEGRRLALQPRHLIREIEQIMGETFPKSI 1186 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + P + + D ++ Q L + A + V Sbjct: 1187 QVDVSPDPELWMVVG-DPTQLHQVLLNLCVNARDAMPAGGQLTLSAGNV 1234 Score = 90.1 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 83/204 (40%), Gaps = 11/204 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 ++++ + + + Q ++ E ++G+ II +G I+ N AV K+ GY Sbjct: 321 AVESLEKEMERGRVEMALRMSEEQYRNVFETVAEGLTIIELDGRIVEGNPAVCKMLGYTC 380 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKK 547 ++ +R F+ ++ ++ ++ E+ + G K+ ++ + + Sbjct: 381 DEFVRLKPADFIHPDSMNLFYTFVQEV---GQGRRFNCEAKGVRKDGTVIPVEVQGSPFS 437 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARVS-HEIR-TP-LTA 602 + D+S + + L ++ E++ S L ++ H ++ P L Sbjct: 438 YRGRPHLLSIVRDVSARRTAEESLRKNEEELRVTFENAAISIALVNMAGHPVKCNPALEK 497 Query: 603 IIGFSEV-IKNQRFGPLGNPRYIE 625 +G+SE ++ F +P +E Sbjct: 498 FLGYSEKELRRMSFAEFTHPEDVE 521 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 15/149 (10%) Query: 449 IEVMQLCSILEATSDGIAIINRE----GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 M+L IL+ + D +A + E ++ N + G + ++ Sbjct: 20 EAEMRLRLILDHSLDMMAFVRVEPGPVFRVVYINEKYMEGIGRSGFALTKEDLMNKTVDE 79 Query: 505 TPSVMNH--------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + L + + + T + + ++ S +L Sbjct: 80 VLRKIQASPSLTEQVLLRYSEAARSMRPQRYEEIIETTQGRYYGESVLTPGADSSGGCAL 139 Query: 557 TM---HDISEWKQEKNKLSHAKKIAEKES 582 + +++E K + K+ ++ S Sbjct: 140 ILYTSREVTERKLAEKKIQRLNRLYAVSS 168 >gi|167746413|ref|ZP_02418540.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662] gi|167653373|gb|EDR97502.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662] Length = 1116 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 113/534 (21%), Positives = 210/534 (39%), Gaps = 44/534 (8%) Query: 318 GENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDA 372 + + P + S N + L KY D + G + L+ Sbjct: 318 QADYIGHLYNAVPEGIALISVDKPYRFLQLNRQGMQLLKYTEGDVEDTVLGEPIENLIHP 377 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + +D R+ ++ I ++ E + Sbjct: 378 DDYDRLVKM--IETADTDGRKSTFEFRVQR---AGGEYFWVSGILERTFDENGEPV-FVA 431 Query: 433 IEPEDVDTRINKRKMEIEVMQLC-SILEATSDG---IAIIN---REGIILSTNRAVSKLF 485 + + ++ +++ E E++Q +++ A S+ I IN + + Sbjct: 432 AFHDVTEEKLAEQEAEREILQERITLVGAISNAYPVIISINLTEDTLNFIYVKPGLMIGL 491 Query: 486 GYPVEDI-LRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLL 539 G L + + + YLTE L + + + + Sbjct: 492 GQQKSYSRLFQDMALTVHPEHADEFRHRFGTEYLTETLGHEKDEVF-LEVRQKLTDGRYH 550 Query: 540 SLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLA 590 + I L ++ ++ + + L A A + K FL+ Sbjct: 551 WISTQIINVDNPYSNDKLAILISR-RTDEQRYEEEQQRQALQTALDNANAANKAKGQFLS 609 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH+IRTP+ AIIG S + R +E I+ SG +L ++ND+LD+SKI Sbjct: 610 NMSHDIRTPMNAIIGMSAIASAHLD---DRERIMECLGKINLSGKHLLSLINDILDMSKI 666 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIAL 709 ESGK++L EP +L E +++ + L++ A+ +RI ++ + ++ D ++Q+ + Sbjct: 667 ESGKLSLRKEPFNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCI 726 Query: 710 NILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 NILSNA+ +TP GG+I I + + I DTG+GM L+K PF + Sbjct: 727 NILSNAVKYTPEGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERAS 786 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 +S + GTGLG+ + K ++D G + S+P KG++ + PL D Sbjct: 787 DSTSSKMTGTGLGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLKLQDVSQD 840 >gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. SMY] gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168] gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp. subtilis str. 168] Length = 589 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL +IL + +DG+ IN +G IL TN + + + N Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G + L + + D++E + Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++ESG LH+E ++++E + + I A EK I Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIA 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + D ++Q+ N++ NA+ T +GG + IS + + + ++D+G Sbjct: 464 LDHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFS 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus DK 1622] Length = 1077 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 108/648 (16%), Positives = 221/648 (34%), Gaps = 31/648 (4%) Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 G +V + R+ + G P Sbjct: 288 LDGLAQHAVVDLGRITEATKQAVAANVPVLLESVPSLLGARQFGPWPEPTEKALVLPLRR 347 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + + + L + + +++ + + Sbjct: 348 TRTDSLRGVVVLGISPRLRFDDTYRQFFEDLARELATH---LAVEQEKRAEREAYTHAKQ 404 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 ++ ++ R + E + + Y G + + L Sbjct: 405 ARAQAEAEVARRAQAEAALRASEERLRMALAAGQLGVVELQYERG-VLSWDERALQHLGL 463 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + L D N + + A W+ + Sbjct: 464 PP----GKSPTLKEAAARIHPDDVNRARRTIEQALRPGAEAIRLECRVQGWDGVQRFLLA 519 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + G + + R +R E +L +I+E + D I + + G Sbjct: 520 MVKTH-FDAQGQPDRVVGALQDVTEQRSAER----ERERLATIVEQSPDFIGVGDPSGRA 574 Query: 475 LSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + N A +L G +++ + + F + ++ ++ + R+ Sbjct: 575 VWVNDAGRRLLGLGLDEDITRYHLRDFFLAEDQTYVDEHIAAAILQGGRREGAFRFRHFP 634 Query: 534 KEE----KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKES 582 E + + ++ + DI K+ + + A++ AE+ + Sbjct: 635 TGEPIAAQYHTFALVEHDTQRQMGIATVGRDIRAQKRLEAERERLLARERVAREEAEEAN 694 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K +FLA VSHE+RTPLTA++G+ +++ R G L + ++R+ +V Sbjct: 695 RLKDEFLATVSHELRTPLTAVLGWVQML---RTGTLPPEKRERALATVERNARAQGQLVE 751 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLD+S+I +GK+ L V + + V + ++ A K I I+ + + I+ D+ Sbjct: 752 DLLDVSRIMTGKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSG-GTIMGDVS 810 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++Q+ N+LSNA+ FTP GG++ + N V + V DTG G++ L + F Q Sbjct: 811 RLQQVVWNLLSNAVKFTPKGGRVQVLVERR-NSSVEITVADTGQGISPQFLPHVFERFRQ 869 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 S + G GLGL + + +V+ + G S +G + P Sbjct: 870 ADGSTTRKAGGLGLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLP 917 Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats. Identities = 47/417 (11%), Positives = 102/417 (24%), Gaps = 45/417 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G +++ + +G + I L D + HI + + G Sbjct: 569 DPSGRAVWVNDAGRRLLGLGLDEDITRYHLRDFFLAEDQTYVDEHIAAAILQGGRREGAF 628 Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFS 205 G + AL + R+ G V R A +RL + Sbjct: 629 RFRHFPTGEPIAAQYHTFALVEHDTQRQM----GIATVGRDIRAQKRLEAERERLLARER 684 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + + ++ E S + P L + + + + + Sbjct: 685 VAREEAEEANRLKDEFLATVSHELRTP-LTAVLGWVQMLRTGTLPPEKRERALATVERNA 743 Query: 266 ESSLPEQEDFHTIN------LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + ED ++ L + ES + + A D G Sbjct: 744 RAQGQLVEDLLDVSRIMTGKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSGG 803 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVDDIEIAG-GLSTLLDAP 373 + + V + + + + + + G G+S Sbjct: 804 TIMGD-VSRLQQVVWNLLSNAVKFTPKGGRVQVLVERRNSSVEITVADTGQGISPQFLPH 862 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ + + H ++ + +A + A + Sbjct: 863 VFERFRQADGSTTRKAGGLGLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLPQAVAL 922 Query: 434 EPEDVDTRINKRKMEIE----------------------VMQLCSILEATSDGIAII 468 E + + ++ + L SI+EA GI Sbjct: 923 RREVLVPPTLRGPLQEQDIPCPPQLASLRVLVVDDEEDTRELLRSIIEACG-GIVTT 978 >gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 684 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 176/386 (45%), Gaps = 23/386 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ +L S+ + GI I+ EG TN + G + L K + + Sbjct: 146 AELRQSEERLRSLSTCSPVGIFEIDTEGGCRYTNPRYQIICGLKATESLEKSWLESVHPE 205 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 + + + + T + + +++ + Y T+ D Sbjct: 206 DRERAVASWSNYICEG--RDYSEEFRFQTAQGIIRWVQVRSSPMLSGQGELLGYVGTLED 263 Query: 561 ISEWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 I+E KQ + + ++ AE + K +FLA +SHE+RTPLT+++G+S+++++++ Sbjct: 264 ITERKQAEEVRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRSKK 323 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 R I+R+ + ++ D+LD+S+I G++ L+ V+L + A+ Sbjct: 324 LDDKATSRA---LEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAALEA 380 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731 V+ A K I + T ++ + D ++QI N+L+NAI FTP GG++ ++ + Sbjct: 381 VRPLAEPKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSIVYG 440 Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T+ + ++V DTG+G+++ L K + F Q ++ G GLGL + + +V+ Sbjct: 441 EEQQTTQKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVEL 500 Query: 788 NMGKFYIFS-TPAKGTLIEIIFPLYD 812 + G + S +G + PL Sbjct: 501 HKGTIFAQSPGSGQGATFTVRLPLLQ 526 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 36/408 (8%), Positives = 104/408 (25%), Gaps = 31/408 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + ID G + + G A + + + + + Y Sbjct: 166 IFEIDTEGGCRYTNPRYQIICGLKATESLEKSWLESVHPEDRERAVASWSNYICEGRDYS 225 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + + + + P+ S E G+ G + + ++ ++ + Sbjct: 226 EEFRFQTAQGIIR-WVQVRSSPMLSGQGELLGY--VGTLEDITERKQAEEVRAQVIREQT 282 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + + ++ + + P + ++ K E Sbjct: 283 ARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRSKKLDDKATSRALEAIERNAIS 342 Query: 266 ESSLPEQ-------------------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + L E + + + + Sbjct: 343 QMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAALEAVRPLAEPKEIQLNTVLDTSVGS 402 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + + NL + P V + ++ Y KY + I+ G+ Sbjct: 403 VYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSIVYGEEQ-QTTQKYAQIQVIDTGIGI 461 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 S+ + + + H ++ ++ A + + Q Sbjct: 462 SSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTIFAQS----PGSGQGAT 517 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINRE 471 + + ++ R N+ E + S + +T + +++ E Sbjct: 518 FTVRLPLLQDNRGNRGNRENREAAEG-ISSSVASTPLAGLKVLVVDDE 564 >gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 584 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 96/415 (23%), Positives = 179/415 (43%), Gaps = 27/415 (6%) Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 RL T I + ++ E ++ ++ + E QL +IL Sbjct: 196 RLATGAQRIGRGEFGARIAVQSQDEMGELAHVMNEMSGRIERQLEL--ISSEKNQLDAIL 253 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 +G+ + +R+ ++ N A +F ++ +P + E+LS Sbjct: 254 NGMGEGVMVTDRDAVVTLVNPAFCTMFA-TGAELQGRPLLQITRHPD---LYAACREVLS 309 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKI 577 Q E G K + + + + HDIS +K+ + Sbjct: 310 ARQEQHQEIALAG----GKTVLVHWVPLRDGDGLQGAVAVFHDISAFKRVE--------- 356 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 + DF+A VSHE+RTP+T I G++E + + R + I + + Sbjct: 357 -----KIRRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPERAERFLLIIQNHADRL 410 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +V DLL +S++ESG+M + +PV+LDEA+ +A+ LV EK + + + Sbjct: 411 SGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTV 470 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD ++Q+ +N+L NAI ++ +G + + T + V + VRD+G+G+ +L + Sbjct: 471 QADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEKDLPRLF 529 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + F ++ ++ GTGLGL + K +V A+ G + S KG++ P+ Sbjct: 530 ERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLPIAR 584 Score = 45.4 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 26/264 (9%), Positives = 67/264 (25%), Gaps = 23/264 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D + ++ ++ G L ++ + ++L + + Sbjct: 263 TDRDAVVTLVNPAFCTMF-ATGAELQGRPLLQITRHPDL--YAACREVLSARQ-EQHQEI 318 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 T L + P+ + G + H + + D + H Sbjct: 319 ALAGGKTVLVHWV-----PLRDGDG-LQGA--VAVFHDISAFKRVEKIRR--DFVANVSH 368 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E++ + ++ + S R + + + +A + L + L E Sbjct: 369 ELRTPVTVIKGYAETLLSGALAADPERA-ERFLLIIQNHADRLSGLVRDLLTLSELESGE 427 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + Q ++ G E + ++ A E + +D Sbjct: 428 MGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLDN 487 Query: 329 C--------PIPFFVYSHGNLFYA 344 + G+L Sbjct: 488 AIKYSETGKSVGVETAREGDLVRV 511 >gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium violaceum ATCC 12472] Length = 1229 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 116/612 (18%), Positives = 221/612 (36%), Gaps = 31/612 (5%) Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 +E PP L ++ + + L D + + S P + Sbjct: 125 PLENFVKLPEPDDRAPPLLSVQREQTPLELICFLHDRDGRRLDAAVTMS-----PVKTSD 179 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + + +A L + Sbjct: 180 KQGGVALIIRDITELVANERDIRKLNASLEQQVEQRTAEIRVFSALQNAILANAGYAIIA 239 Query: 336 -YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 G + NP+ + + + D I L+ D +L++ L + + Sbjct: 240 TDRSGVITLFNPAAERMLGHAAADVIGRV-SLTRFHDPRELAERARQIGERLGQQIESGF 298 Query: 395 AA----------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 A T ++L + N I + ++ Sbjct: 299 DAIVSPSRQARSDESQWTYIRRNGSTLPVLLTISALENDDGHVTSYLVIAADITQREQDR 358 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED----ILRKPFTVF 500 ++E+ QL E GI + +L N + +++ P + + Sbjct: 359 HQLELARDQLVKAAEVAELGIWSWTLDSDVLEWNDRMFEIYDLPRSFRDFGLYYNHWRGR 418 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTM 558 + + + H L L + L E + L + I + + Sbjct: 419 VHPDDIERIEHQLQRALEGADAFNADFRILRQDGEARHLQVAARIEYGADGKAVRVTGIN 478 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++ ++ + LS AK A+ + KS+FLA +SHEIRTP+ AI+G ++I+ Sbjct: 479 RDVTLEREREAWLSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGL--- 535 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N R +YA+ + +L I+ND+LD S++E GK+ L P S+D+ + + ++ Sbjct: 536 -NARQADYADKASSAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSAN 594 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734 +K + + +P I AD ++QI +N+ NAI FT G +I ++ + Sbjct: 595 VGDKDVEVLFDIDPELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEAG 654 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + VRDTG+G+ L++ + F Q S R G+GLGL +++ +V G+ + Sbjct: 655 LRIAFSVRDTGIGIAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTV 714 Query: 795 FSTPAKGTLIEI 806 S KG++ Sbjct: 715 ESEEGKGSVFRF 726 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 32/405 (7%), Positives = 98/405 (24%), Gaps = 52/405 (12%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A G + + +G A + +G L + + D ++R+ T Sbjct: 99 ADGRIDSWNRGAENMLGYPAQETLGKPLENFVKLPEPDDRAPPLLSVQREQTPLELICFL 158 Query: 151 P-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G L + ++ + + + I+ ++L+ E Sbjct: 159 HDRDGRRLDAAVTMSPVKTSDKQGGVA-----LIIRDITELVANERDIRKLNASLEQQVE 213 Query: 210 IK------------------------------------KGHSSVEKEKYDIFSQQSPPPH 233 + + D+ + S Sbjct: 214 QRTAEIRVFSALQNAILANAGYAIIATDRSGVITLFNPAAERMLGHAAADVIGRVSLTRF 273 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGT 291 + + +++ +++ + ++ + N + Sbjct: 274 HDPRELAERARQIGERLGQQIESGFDAIVSPSRQARSDESQWTYIRRNGSTLPVLLTISA 333 Query: 292 LQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANP 346 L+N+ YL + + + + + + + ++ + + N Sbjct: 334 LENDDGHVTSYLVIAADITQREQDRHQLELARDQLVKAAEVAELGIWSWTLDSDVLEWND 393 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + G D+ L R+ A +A ++ + Sbjct: 394 RMFEIYDLPRS--FRDFGLYYNHWRGRVHPDDIERIEHQLQRALEGADAFNADFRILRQD 451 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 E + + + + + GI + R + + Sbjct: 452 GE-ARHLQVAARIEYGADGKAVRVTGINRDVTLEREREAWLSQAK 495 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 24/268 (8%), Positives = 62/268 (23%), Gaps = 27/268 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM--------------RLCDVSDILHIDPNNHIG 134 D G + + + +G+ A +IG R + + L + Sbjct: 240 TDRSGVITLFNPAAERMLGHAAADVIGRVSLTRFHDPRELAERARQIGERLGQQIESGFD 299 Query: 135 DLLKRQNTWYGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 ++ + W G+ L V + ++AL + + + + + + + Sbjct: 300 AIVSPSRQARSDESQWTYIRRNGSTLPVLLTISAL--ENDDGHVTSYLVIA-ADITQREQ 356 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 D L D+ + G S + + + YY H Sbjct: 357 DRHQLELARDQLVKAAEVAELGIWSWTLDSDVLEWNDRMFEIYDLPRSFRDFGLYYNHWR 416 Query: 252 DVLKTEKYP-------LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + + + + ++ Sbjct: 417 GRVHPDDIERIEHQLQRALEGADAFNADFRILRQDGEARHLQVAARIEYGADGKAVRVTG 476 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP 332 +L + + D Sbjct: 477 INRDVTLEREREAWLSQAKSAADSANRA 504 >gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614] gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614] Length = 784 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 117/562 (20%), Positives = 222/562 (39%), Gaps = 49/562 (8%) Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANP 346 +L + + + + + F + + + Sbjct: 231 VGTSLVLLAVIYGFFSQATRAEAADDMYAATRARIDTALTHGRCGLFDWDLSRGRMFWSS 290 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 S L + DDI ++ + + + + ++ Sbjct: 291 SLYELLGREPKDDILSFADVADITHPDDIDLLGLAE-----HLLESGETLVDETFRMRHA 345 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + ++ GI + + + + ++L +E S+ Sbjct: 346 DGSWIWLRARGEIQSEPGRAEPHLIGICIDITEQHELAEQSRMADLRLRDAIETISEAFV 405 Query: 467 IINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 + N ++ N L P I P+ + + + + + + Sbjct: 406 LWNARNELVICNSNYQSLHSLPNSVIKPGTPYKDVMAAASNAEVAPHPVTLRQRGGAPDG 465 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------------- 571 ++ + L + ++ + DI+ K+ + KL Sbjct: 466 SYE--AQLEDGRWLQIS---ERRTKDGGFVSVGTDITALKKHEEKLVDSEKRLKATVTDL 520 Query: 572 ---------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 K AE + KS+FLA +SHE+RTPL AIIGFS+++ Sbjct: 521 QKSRQTLEVQARQLVEMADKYQEEKTRAEAANKAKSEFLANISHELRTPLNAIIGFSDIM 580 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + FGP+G RY +Y I SG +L+++ND+LD+SKIE+G+M + E V+ E+ + Sbjct: 581 TQEMFGPVGTDRYSDYCKDIYSSGTYLLNVINDILDMSKIEAGRMTIETETVNASESAED 640 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A +V A EK I + T N+ + AD R++KQI LN+L+NA+ FTP G + + Sbjct: 641 ASRIVTGAATEKNITVTTDVVENV-SVHADKRALKQILLNLLANAVKFTPDNGTVTLKAR 699 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +++ V DTG+G++ ++E+ +PF Q+ N +G+GLGL +A+++V+ + G Sbjct: 700 PR-GDKLHFEVIDTGIGISERDIERLAQPFVQVENQFTKTHQGSGLGLAIARSLVELHGG 758 Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812 I S KGT + PL + Sbjct: 759 ALVIKSEVKKGTTVSFTLPLAE 780 Score = 45.4 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 27/249 (10%), Positives = 55/249 (22%), Gaps = 10/249 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT 142 F W++ G S L + +G I + D++ ID LL+ T Sbjct: 277 FDWDLSR-GR-MFWSSSLYELLGREPKDDILSFADVADITHPDDIDLLGLAEHLLESGET 334 Query: 143 WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 +T + +G+ ++ + R G I + Sbjct: 335 LVDETFRMRHADGS--WIWLRARGEIQSEPGRAEPHLIGICI-DITEQHELAEQSRMADL 391 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + I + + + + N V Y + Sbjct: 392 RLRDAIETISEAFVLWNARNELVICNSNYQSLHSLPNSVIKPGTPYKDVMAAASNAEVAP 451 Query: 262 LTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 D + + ++ S D + Sbjct: 452 HPVTLRQRGGAPDGSYEAQLEDGRWLQISERRTKDGGFVSVGTDITALKKHEEKLVDSEK 511 Query: 320 NLTPETVDK 328 L D Sbjct: 512 RLKATVTDL 520 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 119/752 (15%), Positives = 237/752 (31%), Gaps = 68/752 (9%) Query: 97 EISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 S + +G + + D P L + + + Sbjct: 273 YCSPQALDVLGYSPGETDKAKGFWTDRIHPEDA-PVYTEAMKLASRTGFLDVEYRV-LSE 330 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH------ 208 T L + + G G+ K L++K L Sbjct: 331 TGKETW--LHDKAVMTDKGA--GLVMHGVATDITEQKREIETRKALERKSRQLDTMLRLI 386 Query: 209 -EIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + + ++A ++ + Sbjct: 387 CDNVPDMIWAKDMQKKYIFANKAVCETLLIARDTDEPIGRTDLFFAQRERARHPDNPDWH 446 Query: 263 TSEESSLPEQ------------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-- 308 + E +++ + L + S + + Sbjct: 447 SFGEICRDTDQITIDAGCPQQFDEYGNVGGKFLFLDVRKAPLFDESGVNIGTVGSARDVT 506 Query: 309 --PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAG 364 + + G +D P V + + N S + Sbjct: 507 GQRRMEKKLEAGNVALRAILDSIPADICVVDVATDEILFMNASMRENSVES--------- 557 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G + + P + + + + + ++ + Sbjct: 558 GTGFHHPRQQSDGGEPLCPGKALQGN--------EMASWEALDHSTGKWNLHFDRPVSWL 609 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + I + + +R ME V + +L+ I + E + N A + Sbjct: 610 DGRPARIRIAMDITARKHAERLMEKAVDEQRILLDYIQTQIWYLIDEQTYGAVNEAHAAF 669 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G + D+ + + V + S E+ + E++ LS+ Sbjct: 670 NGLGIGDMAYRDIYEIYPVDVADVCRQGNEVVFSSGRPVRTEEWLPHFSGEKRFLSILKS 729 Query: 545 IKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 K + DI+E + + L AK+ AE+ S KS FLA +SHEIRTP+ Sbjct: 730 PKLRADGTVEYVVCSGEDITERWKSEEALKKAKEQAEEASRVKSGFLASMSHEIRTPING 789 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G ++++ N + + RS + ++ +++D++D S+IE+GK+ + P+ Sbjct: 790 IMGMLQLLQTADL----NADQASFVDMAVRSCDRLVRLLSDIMDFSRIEAGKLTIQSAPM 845 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 SL+ S L + +++ + +P IL D ++QI N++ NA FT S Sbjct: 846 SLESVFSHVRELFTPLSGSNGVVLDFTLDPALPDRILGDAFRLQQILNNLVDNACKFTTS 905 Query: 722 GGQIIIS----TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G +I + T V V DTG+G+ + +L + PF Q+ + +G GL Sbjct: 906 G-RITVQAWNLTAVEPRTVRVFFEVSDTGIGIPDEDLRRLFDPFIQLCDGYVRSHKGVGL 964 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GL + K +V+ G + S KGT Sbjct: 965 GLSICKRLVELMGGGMSVTSEAGKGTTFAFSL 996 >gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798] Length = 617 Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 188/368 (51%), Gaps = 32/368 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++E E L I A+SD I + + ++ N A KL G L + + Sbjct: 279 RIELETEKKNL--IFNASSDAILVF-SDNRLIQVNPAGKKLLGIDQ---LGEHLQDLDKI 332 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + EIL+LD + T +E ++ L + P + +TM D++E Sbjct: 333 CDVG-----IDEILNLDSPSIIRIETSIGIRELEVRKLE---PENPNDNQKIITMRDVTE 384 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + KS+F++ VSHE+RTPL +++GF+ VI + GPL + R Sbjct: 385 QR--------------ELDRAKSNFISMVSHELRTPLNSVLGFANVILSGATGPLSD-RQ 429 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS-EAISLVQLYANEK 682 E+ YI S ++ +V+D+LD+S++++G LH V L E ++ + +S + A E+ Sbjct: 430 REFLEYIQASSRHLVQLVSDILDLSRMDAGTFTLHKSKV-LPEIIAKQVVSQLSGLAAEQ 488 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + IP+I AD R V+Q+ +N++ NAI FTP GG++I+ + V+ V Sbjct: 489 NIELAFLSDKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIVRVR-NQGDHVLFSVS 547 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G++ ++++ + F Q + Q +GTGLGL +AK++V+ + GK ++ STP +G Sbjct: 548 DTGPGISEEDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQHGGKIWVDSTPGQGA 607 Query: 803 LIEIIFPL 810 P+ Sbjct: 608 TFYFTLPI 615 >gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW] gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW] Length = 1057 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 127/765 (16%), Positives = 241/765 (31%), Gaps = 63/765 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 DA + ++ A + G+ V L I ++ W Sbjct: 160 DAEDRVMLFNQRFLDFFPELAPYVRPGITFEAVMRNLMASGTLPIPP--EKAEAWLTDRL 217 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHL 207 L I +G G +V + L Sbjct: 218 HRH-RNPGPPFETALGKDRIIRVAEHRTGAGGHVSLVVDVTALRTSERRLRDLIDGSLQG 276 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 I +G V + S + + LL S Sbjct: 277 IVIHRG-FDVLYANQSFAGIFGFDTAEALLEGGSLDFIIPPENKGLARRSLDRLLREGGS 335 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLSHRNHPSLSAYFDEGENLTPET 325 + + + + ++ + + + E + Sbjct: 336 FQRSRVAALRRDGTRIWIEVAVRSVDWLDGPALQSIVMDVTERARAEDALAASEARFRDL 395 Query: 326 VDKCPIPF--FVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 V P + G + Y +P + D + +LL + Sbjct: 396 VSTVPGLVYQWYERTGGVHGYSYVSPRSREMYGIAPEDLVRD----WSLLPIHPEDQDRW 451 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + T + R + + P+ + NGI + + Sbjct: 452 RRTIADAVLRETDWSFEGRFI---LPDGSVRWWRAVSRPVRVG-PDEVRFNGIVIDIEEQ 507 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGYPVEDILRK--PF 497 + + +++ L G + +R + ++ + G VE+ L F Sbjct: 508 KRAEAELQSREAMLRYSASLAGLGYWVWDRRLAWTTYCSPELAAIRGVTVEEYLETLGSF 567 Query: 498 TVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 L P ++Y T L R+T + + +R + + Sbjct: 568 EQQLRWIQPEDRDYYRTHALDVARSRRTYVVEYRILRPDGQTRYVREVGGPVYDDRGELV 627 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEK---------------------ESSHKSDFLAR 591 Y + DI++ KQ + +L A+ E+ S KS FLA Sbjct: 628 KYVGALQDITDRKQRELELEEARDRLERQASEMTALALELQTARDAAEAASRAKSRFLAV 687 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTP+T +IG +++ G Y + S + +L ++ND+LD SKIE Sbjct: 688 MSHELRTPMTGVIGMIDLLL----GTTVTSDQRRYLETLHSSADALLVVLNDILDFSKIE 743 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-----IP-RILADLRSVK 705 +G++ + PV L + + I L A++K + +R +P + D ++ Sbjct: 744 AGQLVIEAIPVRLQALLDDVIDLFAPAASQKGVELRVRQPERRQKNRLPKELTGDPTRLR 803 Query: 706 QIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762 Q+ +N++ NA+ FTP+G ++ + V DTG+G+ + + F Q Sbjct: 804 QVLMNLVGNAVKFTPAGSIELRAEAQREDGGTWLLRFEVEDTGIGIPPDVVPMLFESFTQ 863 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 S R GTGLGL + K +V G+ + S P +G++ Sbjct: 864 ADASTTRRFGGTGLGLAICKRLVTMMGGEIGVRSEPRRGSVFWFT 908 Score = 52.3 bits (124), Expect = 4e-04, Method: Composition-based stats. Identities = 35/389 (8%), Positives = 97/389 (24%), Gaps = 28/389 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNH-IGDLLKRQNTWYG 145 +S + G ++ + D I D + R+ W Sbjct: 409 RTGGVHGYSYVSPRSREMYGIAPEDLV-RDWSLLPIHPEDQDRWRRTIADAVLRETDWSF 467 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G+ + ++ P+ E R GIV A + + Sbjct: 468 EGRFILPDGS-VRWWRAVS-RPVRVGPDEV---RFNGIVIDIEEQKRAEAELQSREAMLR 522 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYA---HKDDVLK 255 + + V + + SP + S + +D Sbjct: 523 YSASLAGLGYWVWDRRLAWTTYCSPELAAIRGVTVEEYLETLGSFEQQLRWIQPEDRDYY 582 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + + + ++ G + ++ E +Y+ + Sbjct: 583 RTHALDVARSRRTYVVEYRILRPDGQTRYVREVGGPVYDDRGELVKYVGALQDITDRKQR 642 Query: 316 DEGENLTPETVDKCPIPF------FVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGL 366 + + +++ + A+ + FL + ++ + G+ Sbjct: 643 ELELEEARDRLERQASEMTALALELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGM 702 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 LL ++ + L+ S + + L + IP + Sbjct: 703 IDLLLGTTVTSDQRRYLETLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDD 762 Query: 427 NM-PQNGIEPEDVDTRINKRKMEIEVMQL 454 + + ++ + +L Sbjct: 763 VIDLFAPAASQKGVELRVRQPERRQKNRL 791 Score = 38.1 bits (87), Expect = 6.3, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 14/135 (10%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPF 497 + L LE DG+ + + E ++ N+ F G E ++R Sbjct: 138 AQEAATHLIDGLERLKDGLILYDAEDRVMLFNQRFLDFFPELAPYVRPGITFEAVMRNLM 197 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 P +LT+ L T +++++ + + + + Sbjct: 198 ASGTLPIPPEKAEAWLTDRLHRHRNPGPPFETAL--GKDRIIRV---AEHRTGAGGHVSL 252 Query: 558 MHDISEWKQEKNKLS 572 + D++ + + +L Sbjct: 253 VVDVTALRTSERRLR 267 >gi|113969135|ref|YP_732928.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883819|gb|ABI37871.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1118 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 104/517 (20%), Positives = 206/517 (39%), Gaps = 23/517 (4%) Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 LS E+ ++ + G + N + + + + + Sbjct: 270 LSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGENV---KK 326 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + ++ + I + R Q +S+ + Sbjct: 327 IVPESIRPHHDGYLARYINTREAQIIGTGREVEAQHKAGHSVPVRLSIGHVMQGKAH--Y 384 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFG 486 G + +++++ + S++ GIA + EG ++ + AV + G Sbjct: 385 FVGFLSDLSLRNEMEQELKNNEAKFRSLITNIP-GIAYRCKSTEGWPMVFISEAVLNITG 443 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 YP ED F + I + T + ++ L Sbjct: 444 YPAEDFELPHPKRFFSDLYYP---DDIESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGN 500 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E K + L AK AE+ ++ ++ FLA +SHEIRTP+ A Sbjct: 501 YILDETSNEVWIDGFLMDITERKVMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMNA 560 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ + + I+RS ++ ++ND+LD +K++ GK+ L Sbjct: 561 IIGFSDILLESVLDT----EQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKLELENRVF 616 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 L + + IS + L A ++R+ + A ++ + ++Q+ +N++ NA+ FT Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGNAVKFTCE 676 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G ++ +S ++ V + DTG+GMT +L + + F Q S + GTGLG ++ Sbjct: 677 G-KVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTGLGTTIS 735 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 K +V+ G+ ST +G+ PL +S P + Sbjct: 736 KQLVELMGGQLEAESTLGQGSTFRFTIPLQSSSEPLE 772 Score = 45.4 bits (106), Expect = 0.042, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 69/243 (28%), Gaps = 20/243 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY-- 144 ID G + +++ + +G +++G + + I P + ++ + + Sbjct: 295 IDGQGIIVNVNKAVTTILGWSPAELLGENVKKIV-PESIRPHHDGYLARYINTREAQIIG 353 Query: 145 --GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + G + VP+ L+ + + F GF + + N+ K + Sbjct: 354 TGREVEAQHKAGHS--VPVRLSIGHVMQGKAHYFVGF-----LSDLSLRNEMEQELKNNE 406 Query: 202 KKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEK 258 KF L + E + + ++ + L D+ + Sbjct: 407 AKFRSLITNIPGIAYRCKSTEGWPMVFISEAVLNITGYPAEDFELPHPKRFFSDLYYPDD 466 Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ++ + + + ++ + + + + + Sbjct: 467 IESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGNYILDETSNEVWIDGFLMDITERKVME 526 Query: 317 EGE 319 + Sbjct: 527 QDL 529 >gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 586 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 93/486 (19%), Positives = 184/486 (37%), Gaps = 31/486 (6%) Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 +Y + + D E L L V + Sbjct: 123 MLYVAQRVTAGEFDGYIRLSMSLADVEEGLAQAWMWLFGALLVLFLIAGLVSYRVAAGLT 182 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + ++ + + + ++ + + Sbjct: 183 KPLEQITRVAHRISRFDYDARVK-LARKDEIGQLGMAINGMADSLQQQLKR--IRDNEDL 239 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 + S+L + GI +++ I NR ++ E +L KP+ Sbjct: 240 MQSVLANMTGGILMVDATEHIALINRKAERILHTKGELVLGKPYQELKRNYEFVKFME-- 297 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKL 571 + ++ +++ EEK+L + + D++E ++ + Sbjct: 298 ---EGIARKEAVQEERNVYDPEEKILHFDGVPMFEDNGNYRGMLFLVQDVTEIRKLE--- 351 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 +S+F+A VSHE++TP+ A+ GF+E + G + I Sbjct: 352 -----------RMRSEFVANVSHELKTPIAAVKGFAETLL--AGGVKDEETTRSFLQIIY 398 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 G+ + ++ DLL++SKIES ++ L + PV L E ++ A +K I + Sbjct: 399 DEGDRLNRLIGDLLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVP 458 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVG 747 ++ I AD ++QI +N+LSNAI ++ GG++ +S + E+V + V DTG+G Sbjct: 459 EHL-FIEADEDRLRQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIG 517 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L + + F ++ ++ GTGLGL + K +VD + G + S +GT + Sbjct: 518 IPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILE 577 Query: 808 FPLYDT 813 PL + Sbjct: 578 LPLMHS 583 >gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 784 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 120/746 (16%), Positives = 252/746 (33%), Gaps = 50/746 (6%) Query: 92 HG-YLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKT 147 G + ++ + ++IG ++ + +D + I L RQ + Sbjct: 29 EGDRIIRCNDAAVEMFELLSKDQLIGKKVYGLFPKRQLDGSLSIKKAKELVRQAEENEVS 88 Query: 148 T----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 GT YV I + +PI + + R L K + Sbjct: 89 KFEWTHSRRCGTLFYVEIVMVVIPINGKK------VINVSLRDITEKIKARILLKTNEDI 142 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PL 261 + + E + + +P + + + Sbjct: 143 YQDMFEKNHANMLLADGDTGEIVDANPAACAFYGYDKEQFITMNVTDLSIGSHHEVFNRI 202 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEG 318 + + + + + + N + Y + E Sbjct: 203 EDVKCNKGKHYYFKDQLASGEIKDVEAYSGSINKNGRELVYSIIHDVTEKNKALEALKES 262 Query: 319 ENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + F+ G N + Y + +E + Sbjct: 263 EKKFKTLFNNANDLIFLNHAEDPSSSGQFIEVNEAACKRLGYTREELLEKTP-------S 315 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 D + + A+ I + + E + Sbjct: 316 HITVDKAEGELAGYRKEIYKNGCATFETTLISKRG---YEIPVEVNLHTFKLFETQVELS 372 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-ED 491 I + + + + + + +++ + + II++E IIL +N +K G+ D Sbjct: 373 IVRDITERKQIEVSLIKSKEKYRKLMDFLPESVLIIDKE-IILFSNATATKFLGFDTFND 431 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLP 549 ++ +P F+ M ++ +I + L K+ + + Sbjct: 432 MINRPLLDFIYWEDYDDMVEWINKIQRNKNSKPL-VEIRFIKKDGSIAYGNIVETKVSFN 490 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + + DI+E K+ K L + K K++F ++HE+RTPL I G ++ Sbjct: 491 DQESTMMIIRDITEQKEAKKLL----EETIKYDKLKTEFFVNIAHELRTPLNVIFGALQL 546 Query: 610 I-KNQRFGPLGNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + + + + + + + ++ +L +VN+++DI+KIESG L + V + Sbjct: 547 LELDFKQDEIEKKEALLGVDKRIKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQNVDI 606 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 V V Y + I ++ I D +++I LN+L+NAI FT SGGQ Sbjct: 607 VNVVENITMSVSEYMEIRGINLQFDTQVESKLIACDPDKMERIMLNLLANAIKFTESGGQ 666 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I ++ + E +++ ++DTG+G+ + + F Q+ S EG+G+GL L K++ Sbjct: 667 IKVNM-YEKEENMMISIQDTGIGIPEDRINVIFERFSQVDRSLTRSHEGSGIGLSLVKSL 725 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 V+ G+ + S +G+ I P+ Sbjct: 726 VELQGGQITVKSKIGQGSEFIIALPI 751 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 27/279 (9%), Positives = 74/279 (26%), Gaps = 10/279 (3%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E + +K P + + N + + + + S D + Sbjct: 6 LVKEQDLDYKILFEKSPDASLIIEGDRIIRCNDAAVEMFELLSKDQLIGKKVYGLFPKRQ 65 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + K L R + + + N N Sbjct: 66 LDGSLSIKKAKELVRQAEENEVSKFEWTHSRRCGTLFYVEIVMVVIPINGKKV---INVS 122 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDI 492 + + + ++ + E + + + + G I+ N A +GY E Sbjct: 123 LRDITEKIKARILLKTNEDIYQDMFEKNHANMLLADGDTGEIVDANPAACAFYGYDKEQF 182 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + T + + I + + ++ + + + Sbjct: 183 ITMNVTDL----SIGSHHEVFNRIEDVKCNKGKHYYFKDQLASGEIKDVEAYSGSINKNG 238 Query: 553 CYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + +HD++E + L ++K + ++ +D + Sbjct: 239 RELVYSIIHDVTEKNKALEALKESEKKFKTLFNNANDLI 277 >gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium sp. 'sapolanicus'] Length = 592 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 92/520 (17%), Positives = 208/520 (40%), Gaps = 29/520 (5%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351 L ++ + +H N + A E +Y + N ++ Sbjct: 95 LADSHYNIEDMDNHINRQEIEAAIRTQEAADSIRYSSTIDEDMLYLAQAIIINNEVMGVI 154 Query: 352 TKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 +S++ I + + + + + +T + + Sbjct: 155 RTARSLEFINNILIEDIKNYLFFFIILSFFMFFLTWQLTSNIVKPLEKITNTAEKIAQGD 214 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 L+ + ++ + +++ +I ++ E ++ +IL++ DG+ + Sbjct: 215 LSQRISIRKYNSEIEKLAMMFNHMAAELEDKIA--EISKEKNRIEAILKSMVDGVIATDS 272 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 EG + N A K+F + I K L + + SLD ++++ + + Sbjct: 273 EGRVSLINPAAQKIFNIDEQAIKGKNLISSLFNHRLDMYLQ-----RSLDEKESISREII 327 Query: 531 GSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 ++K++ I + + + DI+E ++ + ++DF Sbjct: 328 YQNPDKKIIQTTFIPLLGDNKDINGGVIVLTDITELRKLETV--------------RNDF 373 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +A VSHE+RTPLT+I+G+ + + ++ I N + ++ DLL++S Sbjct: 374 VANVSHELRTPLTSILGYLDTLLESDIEDQKTKE--KFLKIIKEETNRLSLLITDLLNLS 431 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 KIES L+ P + + L++ A K I I +++P++ V+Q+ Sbjct: 432 KIESQSFELY--PGDFLKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQVEQVL 489 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +N++ NAI ++ SGG I IS S+ ++ ++D G+G+ E E+ + F ++ ++ Sbjct: 490 INLIDNAIKYSSSGGTINISVQKKSD-KLYFEIQDNGIGIPVDEQERIFERFYRVDKARS 548 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTG+GL + + ++ + + + S +G+ Sbjct: 549 RELGGTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588 >gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519] gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii] Length = 602 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 168/370 (45%), Gaps = 23/370 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E +L +I++ DG+ I+ +G I+ N + + +D+ K + ++ + Sbjct: 250 EISSEKSKLNAIIKHMEDGLVAIDGKGQIIHYNPSFLSMLNLREKDLTDKSYDKIIDDYS 309 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563 + + + + + + ++++L + + + DI+E Sbjct: 310 KDLEYGAILQKSISNSSENIIFE----NNKKRILKASPALFRDEAGRISGAIVVFQDITE 365 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ ++ + +F+A VSHE++TP+T I +SE + Sbjct: 366 SQRLED--------------MRREFVANVSHELKTPITTIKSYSETLLCGAL--EDKELS 409 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + I+ + + +V DLL +S ++ K+ + L E V++++ ++++ K Sbjct: 410 KNFVEVIENEADRMSSLVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKN 469 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + ++ I AD ++Q+ +N+L+NAI +TP G I IS + +++D Sbjct: 470 QKLNMKISDEAVPIYADRGKIQQVIINLLTNAIKYTPENGNIRISAQVVDKNAI-FQIQD 528 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+G+ ++++ + F ++ + GTGLGL +A ++ + G + S KG++ Sbjct: 529 SGIGIPKEDIKRIFERFYRVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSI 588 Query: 804 IEIIFPLYDT 813 + FP+ ++ Sbjct: 589 FTVYFPVDNS 598 >gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58] Length = 778 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 116/544 (21%), Positives = 222/544 (40%), Gaps = 51/544 (9%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360 Y+ + F E + + + + + + S + Sbjct: 240 YMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSSRRMFWSGSLYEILGLPPKAAP 299 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + ++ + + + V C + + + Sbjct: 300 LSFSDAARMMHSEDGNLYELARAV-------GCGNLRQIDQIFRMRHSKGHYVWLRARAQ 352 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + GI + + ++ +L +E+TS+ + ++ ++ N Sbjct: 353 VIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNIH 412 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 K +G P ++ + + + ++ + L + T +++ L Sbjct: 413 YQKAYGLPDSVLVAGTEKSTVY---AAAARPVVERRVADPDQSGLSRTTEVQLADDRWLQ 469 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------- 573 + + DI+ K+ + +L Sbjct: 470 INERRTR---DGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELS 526 Query: 574 --------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 K+ A+ + KS+FLA +SHE+RTPL AI+GFSE+++N+ FGP+G+P+Y E Sbjct: 527 DANANYLAEKERAQAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSE 586 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 YA I SG +L+++ND+LD+SKIE+G M ++ E + L + E + L + A +K I Sbjct: 587 YARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNIT 646 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 ++ + + D R++KQI LNILSNA+ FT GG+I + T + L + DTG Sbjct: 647 VQQKVCAGL-TMQGDRRAMKQIMLNILSNAVKFTGDGGRIALRTHVHEAAMI-LTIADTG 704 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L+K +PF Q+ + G+GLGL +++++V + G I S +GT++ Sbjct: 705 IGIPAQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVT 764 Query: 806 IIFP 809 II P Sbjct: 765 IIIP 768 >gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 676 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 107/509 (21%), Positives = 195/509 (38%), Gaps = 22/509 (4%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 +E N ++ P + + A+ +F + I S L D Sbjct: 37 LLTEEALNYAQSILETIREPLLILDKDMKVISASRNFYNTFSVNPDETIG-----SVLYD 91 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + +L ++ M + ++ Sbjct: 92 LGNKQWDIPKLRELLETIIPRETNFGNYEVEHVFDSIGRRVMLLNARQIQRTSDKDPIIL 151 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490 + + + + + + + E +DGI ++ REG I N A K+FGY V+ Sbjct: 152 LAIEDITERKRLEDLLADSEERYRRLFETANDGIVLLEKREGTITHANPAFEKMFGYNVK 211 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +IL K S + ++ + + K L + I + Sbjct: 212 EILGKHLEDIGIFLENSDFQIIMQKLRDTGVINYDDVSI----KTNFNLDIDTDIYLVDR 267 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 +S + D+++ K L A K AE + KS+FLA +SHEIRTPL I+G +++ Sbjct: 268 ASLVQCNIRDMTQNKINLKSLIRATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLL 327 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 G +Y S N + +++D+LD+S+IE+G M +H + + Sbjct: 328 DGTPVGA----DQNKYIELALTSCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNS 383 Query: 671 AISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + L + + K + ++ I P ++ D V QI N++ N + FT G + + Sbjct: 384 ILGLFAVESLTKAVTLKCIIDPTIHPEVIGDEGRVLQILFNLVGNGLKFTKEGS-VTVEI 442 Query: 730 -----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++ V+ V DTG+G+ L+ KPF QI S + +G GLGL + K + Sbjct: 443 TPLGSEKNNDYRVLFTVSDTGIGIHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKL 502 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 V G + S +GT + ++ P + Sbjct: 503 VHLMGGSIEVDSVVGEGTSMNVVLPFKQS 531 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 59/147 (40%), Gaps = 4/147 (2%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 +++ + E + SILE + + I++++ ++S +R F ++ + Sbjct: 30 TESKSDVLLTEEALNYAQSILETIREPLLILDKDMKVISASRNFYNTFSVNPDETIGSVL 89 Query: 498 TVF-LEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRII-IKKLPFSSCY 554 +Q + L I+ + E + + +++ L I++ Sbjct: 90 YDLGNKQWDIPKLRELLETIIPRETNFGNYEVEHVFDSIGRRVMLLNARQIQRTSDKDPI 149 Query: 555 SLT-MHDISEWKQEKNKLSHAKKIAEK 580 L + DI+E K+ ++ L+ +++ + Sbjct: 150 ILLAIEDITERKRLEDLLADSEERYRR 176 Score = 40.8 bits (94), Expect = 0.89, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 16/48 (33%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 G + + K G +++G L D+ L I L+ Sbjct: 191 REGTITHANPAFEKMFGYNVKEILGKHLEDIGIFLENSDFQIIMQKLR 238 >gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus coagulans 36D1] Length = 589 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 163/394 (41%), Gaps = 29/394 (7%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +P ++ E + N ++ E QL +IL + +DG+ NR+G IL Sbjct: 222 VPILTRDEIGELATAFNTMGR--QLKFNMDALKQEKEQLRNILSSMADGVLTFNRDGAIL 279 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N + K + P ++ L +++ + QT E G Sbjct: 280 IMNPPAEMFLQNWYHNQAAK------DAPLPEGLSALLAKVVETEKEQTDEIEINGRY-- 331 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + + L + D++E ++ + DF+A VSHE Sbjct: 332 --YVMIASPLYNLSRIRGVVTIIRDMTEERKL--------------DKLRDDFIANVSHE 375 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTP+ + G+SE I + E+A I + +VN+LLD++++E+G Sbjct: 376 LRTPVAMLQGYSEAIIDDI--AASEEEKKEFAKIIYDETLRIGRLVNELLDLARMEAGHF 433 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + EPVS + + A EK I + +++ + D ++Q+ N++ NA Sbjct: 434 SFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSDSDLTLEIDADRIEQVLTNLIDNA 493 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + T S G + + + V + V D G G+ + +L + F + ++ GTG Sbjct: 494 LRHTSSNGYVKVK-EEEAPGGVYVHVEDNGSGIPDEDLPFVFERFYKADKARTRGKSGTG 552 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL +AK +V+ + G+ ++ S +GT P Sbjct: 553 LGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLP 586 >gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 957 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 109/655 (16%), Positives = 221/655 (33%), Gaps = 41/655 (6%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKN 238 + + + + S + L Sbjct: 178 QELAARQRAENMIRESQQALVKAQLVAHMGSWSSDVAIEHMEWSQGLCQLLGVKVDEAPL 237 Query: 239 KVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 V L + L +++ + + H ++ + Sbjct: 238 PVERLLGLVPQPQQQSVLEMLDRLSQQQQNQVQMEHRIHRETGGVLQVLHRCERVEGANG 297 Query: 298 ESFE--YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY------SHGNLFYANPSFL 349 + + +L E D +Y + N + Sbjct: 298 PRVQGILIDTSQSEALRGALAASEEKFRNLFDNMGSGVAIYEAIDNGDDFIIRGFNKAST 357 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + TK + ++ + P + + ++ Q Sbjct: 358 VFTKLDRESILGKR--VTEIF--PGIRAMGLLDLFKRVWHSGVPEHLPLTQYSDQR---- 409 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 E EN + + R ++++ ++ + E D I + Sbjct: 410 ----ITQWVENYVYRLENGEVVAVFDDVTSNRQAQQELAQSELRFREMAETLEDVFWITS 465 Query: 470 REG-IILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 G IL N A K++GY V+ + + ++ + + + L + S E Sbjct: 466 AHGHRILYVNPAFEKVWGYSVQALEQDINLWSQSIHPEDRARVEEALLQSTSHADGFDQE 525 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESS 583 + + +L + + + DI+ K+ + L A + A++ S Sbjct: 526 YRIV-RGDDGQLRWIHNRGYPIEEQGQVVRVVGLATDITAKKENEAALQQAMRQAQQASQ 584 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTP+ +IG +E++ + Y + SG +LD++N Sbjct: 585 AKSEFLAAMSHEIRTPMNTVIGMTELLLETPL----SEEQQRYVRSLRSSGTALLDVINA 640 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD+++IESG++ L E L E + E ++ A +K++ + N P ++ D Sbjct: 641 ILDLTRIESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNTPNYLVGDAP 700 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFG 761 ++QI +N++ NAI FT G Q+ + E + + V D+G+G+ + F Sbjct: 701 RLRQILINLVGNAIKFTEVG-QVCVRVWLDEAVERLRIEVEDSGIGIPKEHINTIFDMFA 759 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 Q +S R G+GLGL +++ + G+ + S KG+ + P P Sbjct: 760 QADSSMARRFGGSGLGLTISQRLAQLMGGRLAVQSQVQKGSCFTLSMPCQIGEEP 814 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 46/372 (12%), Positives = 101/372 (27%), Gaps = 25/372 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W+ D E S+ L + +G + V +L + P +L+ + + Sbjct: 209 WSSDVAIEHMEWSQGLCQLLGVKVDEA----PLPVERLLGLVPQPQQQSVLEMLDRLSQQ 264 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF---GIVHVNRVDNDPRALGKRLDKK 203 ++ L + R G G GI+ R ++K Sbjct: 265 QQNQVQMEHRIHRE-TGGVLQVLHRCERVEGANGPRVQGILIDTSQSEALRGALAASEEK 323 Query: 204 FSHLHEIKKGHSSV-------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 F +L + ++ + F++ S + + Sbjct: 324 FRNLFDNMGSGVAIYEAIDNGDDFIIRGFNKASTVFTKLDRESILGKRVTEIFPGIRAMG 383 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 S +PE + + + Y L+N + N + Sbjct: 384 LLDLFKRVWHSGVPEHLPLTQYSDQRITQWVENYVYRLENGEVVAVFDDVTSNRQAQQEL 443 Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + F++ S + Y NP+F + Y SV +E L Sbjct: 444 AQSELR-FREMAETLEDVFWITSAHGHRILYVNPAFEKVWGY-SVQALEQDI---NLWSQ 498 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 ++ A L +S ++ + + + + + + G Sbjct: 499 SIHPEDRARVEEALLQSTSHADGFDQEYRIVRGDDGQLRWIHNRGYPIE-EQGQVVRVVG 557 Query: 433 IEPEDVDTRINK 444 + + + N+ Sbjct: 558 LATDITAKKENE 569 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 17/203 (8%), Positives = 42/203 (20%), Gaps = 12/203 (5%) Query: 87 WNIDAHG-YLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 W AHG + ++ K G + + + L + + Sbjct: 462 WITSAHGHRILYVNPAFEKVWGYSVQALEQDINLWSQSIHPED---RARVEEALLQSTSH 518 Query: 144 Y---GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + I PI + R G+ + A ++ Sbjct: 519 ADGFDQEYRIVRGDDGQLRWIHNRGYPI-EEQGQVV--RVVGLATDITAKKENEAALQQA 575 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + K + + + S + + Sbjct: 576 MRQAQQASQAKSEFLAAMSHEIRTPMNTVIGMTELLLETPLSEEQQRYVRSLRSSGTALL 635 Query: 261 LLTSEESSLPEQEDFHTINLNQY 283 + + L E + Sbjct: 636 DVINAILDLTRIESGRLELTEER 658 >gi|329851989|ref|ZP_08266670.1| mmoS [Asticcacaulis biprosthecum C19] gi|328839838|gb|EGF89411.1| mmoS [Asticcacaulis biprosthecum C19] Length = 1042 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 122/655 (18%), Positives = 224/655 (34%), Gaps = 37/655 (5%) Query: 172 NREFSGFRGFGIVHVNRVDNDPRALG------KRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 G G+V R+ L + + +F + E + Sbjct: 259 AGTMLGLIILGVVSARRMSESENRLESERLRAQASEAQFHSVIANAHQAIVTTDEHGRVA 318 Query: 226 SQQ---SPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 S V + T+ + + L Sbjct: 319 SWNGQAEAVFGWSETEVVGRRMSDMIIPERFRDAHTKGMARFMETGEARVIGQRIELPAL 378 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHG 339 N+ + + ++ S + ++ + + L PI V G Sbjct: 379 NRSGTEFTIELALSAARNSAGWQFTAMMHDVTERLAQTQ-LFEAAFHHAPIGVALVGLDG 437 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 N +F L + D + + P D + L R D R Sbjct: 438 GFLKVNLAFCRLVDLEREDLLAADFQK---ITHPDDLDRDLELLAELTRGDIPSYQMDKR 494 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + + + + + + + E Sbjct: 495 ---YLRPNGEVVWVNLSVSMVREETGAPKHYIAQVQNLTERMEAEA-------RYQLMAE 544 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 T+D I + + AV +L G + L ++ + + + Sbjct: 545 NTTDLIVTCDLNLRRSFVSAAVRRLQGISPAEALACRPEDYMHEEDVASVVATFRRTAEG 604 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 + + + + + + DIS ++ KL A Sbjct: 605 ETGLRVRWRCWNQEA-HIWTWVESSPSLIRNGDDTAPMFVDVVRDISSQVTQEQKLEAAT 663 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE ++ K+DF+A +SHEIRTPLT +IGFS ++ ++ P + YA I + N Sbjct: 664 DAAEAAAAAKADFMANMSHEIRTPLTVMIGFSSLLTERQDMP---DDALRYAQRIATASN 720 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L +VND+LD SK+E+G++ L +P + E E ++Q A K + +R N++P Sbjct: 721 SLLSLVNDILDFSKLEAGQLELKPKPTEIVEMSRELFLMMQAQAAAKGLNLRFEDDNSVP 780 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + D ++ +Q+ LN++ NAI FT +G + + + N+ + +RV DTG GM Sbjct: 781 DTVFLDPQAYRQVLLNLVGNAIKFTDTGS-VTLMLGY-DNKHLTVRVIDTGPGMNEAGQA 838 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K + F Q+ S + GTGLGL + + +V+A G + S P +G+ P Sbjct: 839 KLFQRFSQVDGSSTRKHGGTGLGLAICRGLVEAMGGTIGVTSAPGEGSHFHFTLP 893 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 38/408 (9%), Positives = 97/408 (23%), Gaps = 28/408 (6%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 ++ S + I + D HG + + + G Sbjct: 272 SARRMSESENRLESERLRAQASEAQFHSVIANAHQAIVTTDEHGRVASWNGQAEAVFGWS 331 Query: 110 AFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT-WYGKTTLWP---IEGTNLYVPIDL 163 +++G R+ D+ + ++ G+ P GT + + L Sbjct: 332 ETEVVGRRMSDMIIPERFRDAHTKGMARFMETGEARVIGQRIELPALNRSGTEFTIELAL 391 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHLHEIKKGHSSVEKE 220 +A R +G++ ++H L + L + G V Sbjct: 392 SAA------RNSAGWQFTAMMHDVTERLAQTQLFEAAFHHAPIGVALVGLDGGFLKVNLA 445 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 + + K+ + D L + S + + N Sbjct: 446 FCRLVDLEREDLLAADFQKI-----THPDDLDRDLELLAELTRGDIPSYQMDKRYLRPNG 500 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340 ++ + Y++ + + + L E + + + Sbjct: 501 EVVWVNLSVSMVREETGAPKHYIAQVQNLTERMEAEARYQLMAE--NTTDLIVTCDLNLR 558 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + + + L + + + ++ A R+ R Sbjct: 559 RSFVSAAVRRLQGISPAEALACRP------EDYMHEEDVASVVATFRRTAEGETGLRVRW 612 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + P N + + ++K+E Sbjct: 613 RCWNQEAHIWTWVESSPSLIRNGDDTAPMFVDVVRDISSQVTQEQKLE 660 >gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383] Length = 781 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 102/561 (18%), Positives = 194/561 (34%), Gaps = 33/561 (5%) Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEGENLTP 323 + ++ L + + L + + + Sbjct: 84 TLFLSDPAAYSEPLPERLVRLGTFVLVGALVCAVAAMLRHARLTNDAALRREAAARRRLE 143 Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + P G L Y N + L D A L + Sbjct: 144 AVLQALPHGVIATDTNGRLTYLNAAAAALVGCPPGDATGRA-VRDVLRVVDRDGRRVQST 202 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 P+ L + H +Q + + + + + + R Sbjct: 203 PLDLAL---GGAGVVSDRHWLQVEGGEPVPIVEVAAPLGDADGNVDGAVLLLRDAGADRS 259 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ ++++A+ D I I+ +G I+S N A ++FGY + F + Sbjct: 260 RADASRLQ----RAVVDASPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVA 315 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558 + LTE L ++ + + + + + + Sbjct: 316 M--RWLKRKPLTESFDDMHEAVGPIDLLCVRRDGRRFRATVSAGPVRSDARACVALSLTL 373 Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 D+ + A+ A + K + LA VSHE+RTPL I G+ EV+ Sbjct: 374 RESGAQRRRDLRAQRSL-RGARVARDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVL 432 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N L + + IDRS + +V D+LD S + +GK+ L PV + S+ Sbjct: 433 RNSGDSAL----QQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSD 488 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 ++ Q A+ I++ A + + D ++Q+ N++SNA+ FTP+GG + + Sbjct: 489 SVGAFQTAASSAGIVLEFDCAASTCVVSGDAERLRQMLSNLVSNALKFTPAGGSVTVGLA 548 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + V+L V DTG G+ L F + +S G GLGL + + + + + G Sbjct: 549 -RDDVRVVLTVSDTGQGIVPAFLPYVFDMFRRADDSPASSRRGLGLGLSIVRHIAELHGG 607 Query: 791 KFYIFST-PAKGTLIEIIFPL 810 + S +G + P+ Sbjct: 608 SVTVKSAGRNRGATFTVTLPV 628 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 60/263 (22%), Gaps = 25/263 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWY 144 D +G L ++ +G G + DV ++ D + L Sbjct: 156 TDTNGRLTYLNAAAAALVGCPPGDATGRAVRDVLRVVDRDGRRVQSTPLDLALGGAGVVS 215 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRL 200 W VPI A P+ + G R G + + Sbjct: 216 D--RHWLQVEGGEPVPIVEVAAPLGDADGNVDGAVLLLRDAGADRSRADASRLQRAVVDA 273 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK---------- 250 + S +F R + ++ Sbjct: 274 SPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVAMRWLKRKPLTESFDDMHE 333 Query: 251 -----DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 D + + S+ P + D T ++ + + + Sbjct: 334 AVGPIDLLCVRRDGRRFRATVSAGPVRSDARACVALSLTLRESGAQRRRDLRAQRSLRGA 393 Query: 306 RNHPSLSAYFDEGENLTPETVDK 328 R +A + ++ TV Sbjct: 394 RVARDQAATSNRLKDELLATVSH 416 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 25/249 (10%), Positives = 61/249 (24%), Gaps = 22/249 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G + + + G G + + + + + + G Sbjct: 281 IDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVAMRWL-KRKPLTESFDDMHEAVGPID 339 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + ++A P+ S R + R R R + Sbjct: 340 LLCVRRDGRRFRATVSAGPVRSDARA-----CVALSLTLRESGAQRRRDLRAQRSLRGAR 394 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + R+K+++ + + + +L + S Sbjct: 395 VARDQ----------------AATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNSGDS 438 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 +Q+ I+ + + + G + + S + L P +T Sbjct: 439 ALQQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAAS 498 Query: 329 CPIPFFVYS 337 + Sbjct: 499 SAGIVLEFD 507 >gi|310818443|ref|YP_003950801.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309391515|gb|ADO68974.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 661 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 94/513 (18%), Positives = 190/513 (37%), Gaps = 34/513 (6%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362 + A E E ++ P + + G L Y N + T ++ + Sbjct: 152 ALLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPSLE 211 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + V T +W+ + + + Sbjct: 212 VFLKVVHPADREHMRREWTEAVRQVSRMEREFRMRRHDGTWRWHLGRA-------VPERD 264 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAV 481 + + + D + + +E + + L+AT D + + E + N Sbjct: 265 GTGRLVGFIAVATDIDDKKRAEATLE----RFKATLDATLDCVLMFEPEHLTLTYANVGA 320 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +K G E ++ + L + S + T ++ + + Sbjct: 321 TKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPS-HTYSTTHRRRDGTEIPV 379 Query: 542 RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++++ + + DI+E K+ + L S K FLA SHE+RT Sbjct: 380 EVVLQYVAAGGGPGRFVSVARDITERKRAEEAL-------LLASEAKDAFLAAASHELRT 432 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL A G + + + G G + I+R + + +V DLLDIS++++G+++L Sbjct: 433 PLAAAKGHA-HLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLD 491 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E L + E + + + +R + + D + Q+ N+LSNAI + Sbjct: 492 LERFDLGTLIRETCDRMGVLSQLHP--LRVELQEQLEGLW-DRGRLDQVLTNLLSNAIRY 548 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P GG++++ E V L V+D GVG+ + + FG+ S + G GLGL Sbjct: 549 SPEGGEVLVKAA-ADGEGVQLSVKDCGVGIPPEKQGLIFERFGRAHGS---KYGGLGLGL 604 Query: 779 PLAKAMVDANMGKFYIFST--PAKGTLIEIIFP 809 +++ +V+ + G+ ++ S G+ + P Sbjct: 605 TISQGIVEQHGGRIWVDSQGCAGDGSTFHVWLP 637 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 58/245 (23%), Gaps = 6/245 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 W A G L +++ + G A + V + + +++ + Sbjct: 181 MWAAGADGKLNYVNQVWREYTGLEAEEPSLEVFLKVVHPADREHMRREWTEAVRQVSRME 240 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +GT + A+P GF + A +R Sbjct: 241 REFRMRRHDGT--WRWHLGRAVPERDGTGRLVGF--IAVATDIDDKKRAEATLERFKATL 296 Query: 205 SHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + Y R + + + E D+ + L Sbjct: 297 DATLDCVLMFEPEHLTLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQ 356 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S E H + ++S + +E L Sbjct: 357 SGEQPSHTYSTTHRRRDGTEIPVEVVLQYVAAGGGPGRFVSVARDITERKRAEEALLLAS 416 Query: 324 ETVDK 328 E D Sbjct: 417 EAKDA 421 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 14/238 (5%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTLWP 151 L + K +G +++G R+ +V D + I L+ TT Sbjct: 312 TLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRR 371 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +GT + V + L + F + E K Sbjct: 372 RDGTEIPVEVVLQYVAAGGGPGRF-----VSVARDITERKRAEEALL-------LASEAK 419 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + + K+ E K + + +T L + Sbjct: 420 DAFLAAASHELRTPLAAAKGHAHLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLD 479 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 L+ ++ GTL + + LS + + +D+ Sbjct: 480 ISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQLHPLRVELQEQLEGLWDRGRLDQV 537 >gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39] Length = 828 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 98/484 (20%), Positives = 193/484 (39%), Gaps = 23/484 (4%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA-RL 400 +A +Y + G + + S + L + + + Sbjct: 62 IFAVDDLEENQQYIDPQLLLPFSG--STIPQYYASAPETLTDKRLLKLIPGTTSLLVLPI 119 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + + E + + +E ++ +IL+ Sbjct: 120 QELDIQGYILIGWHMSFTFSESFQKFVLHGLDKIRETIHLGQHYYALEELKVRFNAILQT 179 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYLTE--- 515 GI I+ G N + + G ++ + ++Q Sbjct: 180 VEQGIVFIDDSGKNSWINEPAAAILGISGGNVPPAELSAAMQQLRSRADNKEEIFRRGME 239 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-------KQEK 568 I + ++ + ST E +L++ S T DI++ K+ Sbjct: 240 IFTSADKRVKNWQWIFSTPETYVLNVCCTPTISEHISGMLWTFDDITQQYLYDEHLKELN 299 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L +IA++++ KS+FLA +SHEIRTP+ +IG + +++N R + ++ Sbjct: 300 VQLEEKSRIADEQNKAKSEFLANMSHEIRTPMNGVIGMTSLLRNTRL----DEDQFDFVE 355 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I S + +L+I+N++LD SKIESGK+ L P L + V E L+ A EK + + Sbjct: 356 SIRISADALLEIINEILDFSKIESGKLELEEHPFVLSKIVEETYDLLSFKAQEKDLDLLY 415 Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744 ++P ++ D+ ++QI +N++ NAI FT G + E+ V+D+ Sbjct: 416 IIDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDEGEILTSIKLLEKKGSTYELEFSVQDS 475 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ ++ K F Q+ +S + GTGLGL ++ ++ G+ ++ S GT Sbjct: 476 GIGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGLVISARLIQKMNGRIWVESEVNVGTTF 535 Query: 805 EIIF 808 + Sbjct: 536 KFTI 539 >gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 779 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 93/499 (18%), Positives = 185/499 (37%), Gaps = 30/499 (6%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 V G + + N + +T + S + L + P+ Sbjct: 26 IAVDMDGKIVFLNSAAEGITGWSSKEAKNENFNTVFPLINISTGEKVKS-PIDNVIKLGK 84 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + I + ++ + + + R + ++ + Sbjct: 85 SVGLTKNSGLITKDNRKKY-ISANSSPIKDDLGNFTGIVVVFRDITRIRSIELELINKEH 143 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--------- 503 ++ + G+ I++ I+ + N V K I+ K Sbjct: 144 GFKALFNSVPVGVVILDENEIVYAVNNCVLKFLNIKKTQIIGKAVGNGFCCKNSFDDERG 203 Query: 504 ---------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + + + + + + E L L I Sbjct: 204 CGYGENCKSCSLRKAITFAEKFNVSTNMEFNNVVVIENKEIEVWLKLSITPVYFGEKRVI 263 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DI + K ++ +L AK+ AE S KS+FLA +SHEIRTPL ++G ++ Sbjct: 264 VAVLMDIKDRKNKEIELRKAKEEAEAASKAKSEFLANMSHEIRTPLNGLVGMVDLTLLTD 323 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 N E N +L ++ND+LD SK+E+GK+ + + + E I Sbjct: 324 L----NCEQKENLMTAKSCTNSLLKVINDILDFSKLEAGKLVIENINFDIKNLIEEIIKA 379 Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--- 730 A K+I + +F++ IP+ +L D ++Q+ N+++NAI FT G +I + Sbjct: 380 NSSTALAKQIELNYTFSSTIPQFLLGDPNRLRQVLNNLINNAIKFTEHG-EISLKVKNIE 438 Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + ++ + DTG+G++ + + F Q+ S GTGLGL ++K + + Sbjct: 439 TIDEHVKLEFSITDTGIGISEENINTIFESFSQVDGSSTRTVGGTGLGLAISKQLTEIMG 498 Query: 790 GKFYIFSTPAKGTLIEIIF 808 G + S +G+ + Sbjct: 499 GNLLVKSKLGQGSSFYFVL 517 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMN 510 L + L +DG+ ++ +G I+ N A + G+ ++ + F +T + Sbjct: 14 LINALSCMADGVIAVDMDGKIVFLNSAAEGITGWSSKEAKNENFNTVFPLINISTGEKVK 73 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQ 566 + ++ L L K + TK+ + + + + + DI+ + Sbjct: 74 SPIDNVIKLGKSVGLTKNSGLITKDNRKKYISANSSPIKDDLGNFTGIVVVFRDITRIRS 133 Query: 567 EKNKLSHAKK 576 + +L + + Sbjct: 134 IELELINKEH 143 >gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter versatilis Ellin345] Length = 1326 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 120/687 (17%), Positives = 225/687 (32%), Gaps = 52/687 (7%) Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 P+ N + ++ A + L S + + +VE Sbjct: 129 RPVRDSNIAGDHVKALALMRDKTGPRLLVARDALESLIALQSKALDEESAALTVETNHTI 188 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ- 282 + + S + D +L L +E + E N Sbjct: 189 LIVWAFMGLGIVATFGFSLVVIQREVVDVILSFRDRVLDVAENRLDQKIEGLALPNEIGE 248 Query: 283 --YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340 + + + + E + + + Sbjct: 249 MSRALHSLQTAAKERETQRWLKSEVATTIESLQKSESHEAFARTLLSRISESVGIVYGAA 308 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK------------PVMLYR 388 Y + + +GG + L+ + + + Sbjct: 309 --YFLDRARQRYVRSATFAFDGSGGSNEFAAGEGLAGQAVAEKRALQIHLSEQNELSIPA 366 Query: 389 SDRTCIAASARLHTIQWNRENSLA---------------MTFIPFEKANQFPENMPQNGI 433 A I + E + E + N Sbjct: 367 GIGVVRPAQLWFVPITTSDEVIGVVELASAGTLTAEQIELLHALLPAIALNLEILNANLA 426 Query: 434 EPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + ++ + ++ + IL + +GIA ++ +G I N A + + GY I Sbjct: 427 TRKLLERTQQQAIEIAETEEKSRLILGSVDEGIAGMDAKGYITFINPAGADMLGYDQAGI 486 Query: 493 LRKPFTVFLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + + + + ++ L K+ Sbjct: 487 VGAHLHSTIHYAHSDGSPYSRDDCPMYRTAITGEACAVDDEVLWR-KDGGAFPAEYAATP 545 Query: 548 LPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + DI+E K+ + +L A++ AE + KSDFLA +SHEIRTP+ AII Sbjct: 546 VLKDGRAVGTVVAFRDITERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAII 605 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G S + P + +Y N I S + +L ++ND+LD SKIE+GK+N+ SL Sbjct: 606 GMSHLALKTNLSP----QQRDYLNKIQISSHHLLGVINDILDFSKIEAGKLNVESIDFSL 661 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 ++ + +L+ A+ K + + + ++P ++ D + QI N SNA+ FT G Sbjct: 662 EKVLETLANLIGEKASAKGLELIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFTEHGE 721 Query: 724 QII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +I + + VRDTG+G+T + + + F Q S + GTGLGL + Sbjct: 722 IVIGAKVQERTDDEVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAI 781 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807 +K + G+ + S P KG+ Sbjct: 782 SKQLSALMHGEVGVESEPGKGSTFWFT 808 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 12/147 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-------ILHIDPNNHIGDLLKRQN 141 +DA GY+ I+ +G ++G L D + + Sbjct: 462 MDAKGYITFINPAGADMLGYDQAGIVGAHLHSTIHYAHSDGSPYSRDDCPMYRTAITGEA 521 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 LW +G P + AA P+ R F A +R Sbjct: 522 CAVDDEVLWRKDGGAF--PAEYAATPVLKDGRAVGTVVAF---RDITERKKNEAELRRAR 576 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 577 EAAEDATRTKSDFLANMSHEIRTPMNA 603 >gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 822 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 127/651 (19%), Positives = 247/651 (37%), Gaps = 45/651 (6%) Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 R +G V +++ L + D + +P Sbjct: 69 RQDNLAGAARIAQVIDSKMQQVQPGLNQSADVSDRDYARVLAQLEEGG------LFPGTP 122 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 L+ A+ D + +L+ +E P ++ + Sbjct: 123 IISSLTGAPQWPLSLRRANPADSTQVGLVRMLSVDEVQRPLEQARVKPDG---------- 172 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 ++ + ++ + + + P L A + Sbjct: 173 ---------MAWIIRDDGTIITVAPWRADQIGQNVAGQLPAKVLRGGAERLVAATFDGVD 223 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + GL + + I + ++ Sbjct: 224 YLVTSAP-----VQGLPLRVAVAGPMSDYFIDWWREAGMQGLLMLV-MTATSLYSGHRQW 277 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 + + A+ E Q+ + ++ R K+ L + LE + + I + Sbjct: 278 TLLGQLDDANASLQQEVRSQSAVLNAEIRERQEHEKL---ARVLRNALEYSGSMVLITDA 334 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 G++ N A K GY ++DI+ K ++ + IL+ + Sbjct: 335 HGLMEYVNPAFVKATGYDLDDIIGKRPSMLRHPELSPAATGLWSTILACRSWTGM---FC 391 Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ L + I + S + D + + + +L AK++AE S KS Sbjct: 392 NQRKDGTPLWVSATISPVTDDSGVITHFVAVEEDATSRRDGEEELREAKRMAEAASLAKS 451 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FL+ +SHE+RTP+ AI+GF++++ N LG R YA+ I +SGN +L +VND+LD Sbjct: 452 EFLSSMSHELRTPMNAILGFAQLLTNADNDSLG-ERQRFYADSILKSGNHLLSLVNDILD 510 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVK 705 +++IE+G+++L FE V D+ ++E I ++ A +++ + + P + AD +K Sbjct: 511 MARIEAGRLSLSFERVEPDQVMAEIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLK 570 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q +N+ SNA+ + +GG + S +H V + V DTG+G+ + +PF ++ Sbjct: 571 QALINLASNAVKYNRTGGTVRFSISHGETGPVRIAVSDTGIGIPEKRRTEVFQPFARL-G 629 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ EGTG+GL + K +V+A G+ F+ GT + P S P Sbjct: 630 AEASTVEGTGIGLTITKMLVEAMGGQIGFFTQENLGTTFWLEIPRA-ASQP 679 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 43/373 (11%), Positives = 96/373 (25%), Gaps = 28/373 (7%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR--------FTWNIDAHGYLKEISEE 101 + + Q S S + + + R +R DAHG ++ ++ Sbjct: 285 DANASLQQEVRSQSAVLNAEIRERQEHEKLARVLRNALEYSGSMVLITDAHGLMEYVNPA 344 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 K G +IG R + + + +W G +GT L+V Sbjct: 345 FVKATGYDLDDIIGKRPSMLRHPELSPAATGLWSTILACRSWTGMFCNQRKDGTPLWVSA 404 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 ++ P+ + + F + D + + K S + Sbjct: 405 TIS--PVTDDSGVITHF--VAVEEDATSRRDGEEELREAKRMAEAASLAKSEFLSSMSHE 460 Query: 222 YDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-------SEESSLPEQ 272 L + S + D +LK+ + L + + Sbjct: 461 LRTPMNAILGFAQLLTNADNDSLGERQRFYADSILKSGNHLLSLVNDILDMARIEAGRLS 520 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 F + +Q + + + + A + L ++ Sbjct: 521 LSFERVEPDQVMAEIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLKQALINLASNA 580 Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 G + S T + + G+ P+ +P ++ + Sbjct: 581 VKYNRTGGTVRFSISHGE-TGPVRIAVSDTGIGI------PEKRRTEVFQPFARLGAEAS 633 Query: 393 CIAASARLHTIQW 405 + + TI Sbjct: 634 TVEGTGIGLTITK 646 >gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans C2A] Length = 742 Score = 342 bits (877), Expect = 2e-91, Method: Composition-based stats. Identities = 105/410 (25%), Positives = 189/410 (46%), Gaps = 15/410 (3%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + I + + +++++++ + +L++ ++ + +N + I+ Sbjct: 334 RRLDLKDNDELYRLAKEINGMLNEIELAEQELKVQEREKKVLLDSLNEMVIFVNPQLNIV 393 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N+A + +E + P V + L EI S +++ E +T++ Sbjct: 394 WANKAALEYMHMDLEKAKGIHLKAIPSMSGPLVEHLPLEEIFSSGNKESGEF----TTED 449 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 S++ T DI+ K + L K+IAE + KS+FLA +S Sbjct: 450 GNSWSIQATPVTDDDGKIIGVLETFRDITGKKAVEK-LIQEKQIAEIANRTKSEFLANIS 508 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL +IIGFS+++ Q FG L N + + YA I +SG +L ++ND+LD+SK+E+G Sbjct: 509 HELRTPLNSIIGFSDLLCEQIFGEL-NEKQLRYAGNISKSGKHLLSLINDILDLSKVEAG 567 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 KM L + L ++ +L+ A+ K I I + + + AD QI N++ Sbjct: 568 KMELDYTEFELAGKLNTIKNLLAPIADRKSIQIEIEVDSRLTNLYADEAKFAQIMYNLVD 627 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI F + + ++V + V D G G+ + K KPF Q+ + +G Sbjct: 628 NAIKFASENSPVNVGARMK-GDKVEITVTDIGAGIKPEDQHKLFKPFSQVDYFASKQHQG 686 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL------YDTSHPH 817 TGLGL L K +V + G + S P +G+ P+ + + PH Sbjct: 687 TGLGLYLVKQIVQMHRGYVWFRSVPGEGSTFAFAIPINGKKSDGNDTAPH 736 >gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. ATCC 3502] gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. ATCC 19397] gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A str. Hall] gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC 3502] gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397] gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall] Length = 569 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG + I + V+ + + ++ T + Sbjct: 266 ANKLFGIKRDIIGENLMDNIRDFELEKVLRDKEPGYKEIGILWPEKRTLRVKTTD----- 320 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 321 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIKINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 477 EPNGYVSIGTR-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRVEGGTGLGLA 535 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 180/382 (47%), Gaps = 15/382 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L + E + I I++++ + N++ S L G +EDI K Sbjct: 264 KRELIRSEKEKTKLALVAEHAHNAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ + T + SL ++ + K+ L + + + + + Y + Sbjct: 324 LQ-LDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 383 VERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + + Q Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYQ 498 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 +K + N I + D ++QI N++SNA+ FT G I + + T Sbjct: 499 SICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHKGS-ITLNFSHTLTA 557 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V ++V+DTG+G+ L+ +PF Q S + GTGLGL + K + D G Sbjct: 558 KGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGY 617 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 + S+ KGT ++ PL T Sbjct: 618 ISVNSSEGKGTCFTLVLPLEIT 639 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143 + +D L I++ GN + G L V + I N L LK + Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKAGTSV 347 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +GT ID++ PI+ N + + + + K Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELEDKLIKAADK 403 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425 >gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax delafieldii 2AN] Length = 1425 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 106/571 (18%), Positives = 200/571 (35%), Gaps = 36/571 (6%) Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L S L + + + Sbjct: 284 PLVTLVEQPYHATLERWLASLRGPLLFMSVALALIGFMTYASWRSARAREA--------A 335 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 R E F G + + N + +T Sbjct: 336 ERGRNEAQQETARREQELSVLFKSVQELIFRTDPHGRIRFVNARWHTITHQPVETA---R 392 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G + P+ V + + A+ + Sbjct: 393 GKHLRDIVHPESRAC-----VDALFAPEPPTGVRMAQVQLTGPDGGPRALDISVVPLRDP 447 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + G + +++++ ++ +LE I + + EG LS N+A Sbjct: 448 TGQLRGFAGSAVDVTPLLTAQQRLQEQLAFTSQVLECNPLPICMTDPEGRFLSVNQAWED 507 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 G P +L + FL + ++L + + +++ Sbjct: 508 FMGVPRASVLGLRNSDFLAPQEARTYDASNDQLLREG--SRVRYEERVRRPDGSFRDVQV 565 Query: 544 IIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + DI+E+ + +AE+ S KS+F+A +SHE+RTP Sbjct: 566 TKVPVFTNNRQPVGILIVKMDITEFLAA-------RDLAEEASRSKSEFVANISHELRTP 618 Query: 600 LTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 L +I+GFSE + R + + + I +G +L +VNDLLDI+KIES H Sbjct: 619 LQSILGFSELGMLRGR----QHEKLAAMFSDIHAAGQRMLVLVNDLLDIAKIESTVGAFH 674 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 FE + + + + + + ++L KR+ +R + D +Q+ N+L+NA+ F Sbjct: 675 FERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLIAKVDPSRFQQVVRNVLANAVKF 734 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P G I IS + ++ + ++V D G G+ ELE + F Q ++ GTGLGL Sbjct: 735 SPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELEAVFEAFVQSSQTRDGS-GGTGLGL 793 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + ++ A+ G+ + P G + I+ P Sbjct: 794 AICRKIITAHGGRINATNVPGGGAMFHIVLP 824 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 162/361 (44%), Gaps = 18/361 (4%) Query: 464 GIAIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 G+A++ +GII + S + D L + + T +V + + I+ Sbjct: 1058 GVALVGLDGIIRVRVLGGASANVDAQLPDDLLQTMSKTSRGATAAVSSDGIRRIIGFSRV 1117 Query: 523 QTL---------EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLS 572 E + + L + + + IS L+ Sbjct: 1118 GDYPLVVLSGTSETEAFAPWRTTRNTVLMLTVLLSLAVVAFVAVFLGSISRLALSHAALT 1177 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 ++ A++ + KS+FLA +SHE+RTPLT+I GF+E+++ + PL + I + Sbjct: 1178 QSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQS----ALIRQ 1233 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 + ++ ++LD+++IE+G M H EPV L + V E L ++ A K + + + ++ Sbjct: 1234 GAEHLNALLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLALTAAVSD 1293 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTN 750 P+ ++ D +KQI N+LSNAI FTP+G ++ I +V V DTG G+ Sbjct: 1294 AAPQTLVTDRLKLKQILSNLLSNAIKFTPAG-RVEIFVDACPDGSQVHFHVNDTGPGIPA 1352 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F Q + GTGLGL L++A+ + G + S +G+ + PL Sbjct: 1353 SLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFTLSLPL 1412 Query: 811 Y 811 + Sbjct: 1413 H 1413 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 36/435 (8%), Positives = 93/435 (21%), Gaps = 41/435 (9%) Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 +G + + + + + +++ ++ + P L Sbjct: 41 TGSLMWMELRRAQAQDRQQLELLASVMDAHATQLFDNTKVALDSLAKNLTHEAISPAQLE 100 Query: 236 MKN----KVSSLTEYYAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + + A D + P + L + Sbjct: 101 AQQSYRLQGLPFLRSIAALDIQGRVLASSAPSDRGGKVDLARLPAAPATDDRVVIGPWVN 160 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPF--------------- 333 G + + + V + P Sbjct: 161 GRTLVADPRRGAVPARLGFIPMVRLVHLSPTTSVLLVAQINPDALANYQQQLTNGTSGGT 220 Query: 334 ---FVYSHGNLFYAN-----PSFLLLTKYKSVDDIE----IAGGLSTLLDAPKLSDNNAI 381 G L + L + + G + DA KL + Sbjct: 221 QVLLALDSGTLLTQVGGETPAAGTRLRDHPVFQGLLPTHKGTYGPVRIFDARKLGAWHTS 280 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 L A+ + + E + Sbjct: 281 SSQPLVTLVEQPYHATLERWLASLRGPLLFMSVALALIGFMTYASWRSARAREAAERGRN 340 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++ +L + ++ + I + G I N + PVE K + Sbjct: 341 EAQQETARREQELSVLFKSVQELIFRTDPHGRIRFVNARWHTITHQPVETARGKHLRDIV 400 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557 + + ++ +R + + +L I + L ++ + Sbjct: 401 HPESRACVDALFAPEPPTGVRM---AQVQLTGPDGGPRALDISVVPLRDPTGQLRGFAGS 457 Query: 558 MHDISEWKQEKNKLS 572 D++ + +L Sbjct: 458 AVDVTPLLTAQQRLQ 472 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 14/254 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + D HG ++ ++ G L D+ + + L + Sbjct: 363 LIFRTDPHGRIRFVNARWHTITHQPVETARGKHLRDIVHP---ESRACVDALFAPEPPTG 419 Query: 145 GKTTLWPIEGTNLYVP-IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + G + +D++ +P+ + GF G + + + Sbjct: 420 VRMAQVQLTGPDGGPRALDISVVPLRDPTGQLRGFAGSAV--DVTPLLTAQQRLQEQLAF 477 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 S + E + + S R +++ A ++ Sbjct: 478 TSQVLECNPLPICMTDPEGRFLSVNQAWEDFMGVPRASVLGLRNSDFLAPQEARTYDASN 537 Query: 260 PLLTSEESSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L E S + +E + + TK F + + + Sbjct: 538 DQLLREGSRVRYEERVRRPDGSFRDVQVTKVPVFTNNRQPVGILIVKMDITEFLAARDLA 597 Query: 316 DEGENLTPETVDKC 329 +E E V Sbjct: 598 EEASRSKSEFVANI 611 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 23/241 (9%), Positives = 54/241 (22%), Gaps = 5/241 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G +++ +G ++G+R D + D L R+ + Sbjct: 492 TDPEGRFLSVNQAWEDFMGVPRASVLGLRNSDFLAPQEARTYDASNDQLLREGSRVRYEE 551 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + +P+++ NR+ G IV + + A + S Sbjct: 552 RVRRPDGSFR-DVQVTKVPVFTNNRQPVG---ILIVKM-DITEFLAARDLAEEASRSKSE 606 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + I +++ + H L Sbjct: 607 FVANISHELRTPLQSILGFSELGMLRGRQHEKLAAMFSDIHAAGQRMLVLVNDLLDIAKI 666 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 FH ++ + + V Sbjct: 667 ESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLIAKVDPSRFQQVVRN 726 Query: 329 C 329 Sbjct: 727 V 727 >gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator hybrid protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 674 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 96/518 (18%), Positives = 190/518 (36%), Gaps = 41/518 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYANPSFLLLTKYKSVDDIEIA 363 A + E F V G + N +F T + Sbjct: 19 AEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNAL---N 75 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + LL + I + ++ + Sbjct: 76 VSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQAKALKR--------WYSVDAFRVG 124 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 PE + + + + +R++ + ++ + + +++ +G++ N A + Sbjct: 125 PPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 184 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 FG + + L + SL + L + + + + + Sbjct: 185 FFGLDISSGTVSAWRELLHPDDLPTFQ--FELTASLQEQHGLRALVRARRHDGQWRWIEM 242 Query: 544 IIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARV 592 + + + D++E ++ + A+ AE + K +FLA + Sbjct: 243 TATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATL 302 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPLT I+G+SE++ + N + + I S +++D+LD+S + Sbjct: 303 SHELRTPLTTILGWSELLLQRVEEGQPNYKG---LSVIASSARAQKRLISDMLDLSSMLL 359 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 GK+ L E + L E V EA++ +L A K ++ +L D ++Q+ N+L Sbjct: 360 GKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLL 419 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI FTP+ G+I +S + +++ V D+G G+ L F Q + + Sbjct: 420 SNAIKFTPAHGRIDVSIE-RDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHG 478 Query: 773 GTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 G GLGL + + +V+ + G+ S KG + P Sbjct: 479 GLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 516 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 46/462 (9%), Positives = 118/462 (25%), Gaps = 46/462 (9%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 135 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 193 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q+ +G + I++ A P YS + Sbjct: 194 TVSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDG--QWRWIEMTATPRYSAD 251 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 252 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 310 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + + +++ + + D ++ L + + Sbjct: 311 TTILGWSELLLQRVEEGQPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 370 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---- 344 L + + E + L + L + + + + Sbjct: 371 LVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHG 430 Query: 345 --NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + S + V + G++ + + + Sbjct: 431 RIDVSIERDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQL 490 Query: 403 IQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KM 447 ++ + + +P +Q + + ++ Sbjct: 491 VEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLRL 550 Query: 448 EIEVMQ------LCSILE----------ATSDGIAIINREGI 473 Q L +LE + +D +A+I+ G Sbjct: 551 LAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 592 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 19/175 (10%), Positives = 50/175 (28%), Gaps = 11/175 (6%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350 + + ++ + E E D P+P +V G + + N ++ Sbjct: 125 PPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 184 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 ++I+ G + D+ L S + A L + + Sbjct: 185 FFG------LDISSGTVSAWRELLHPDDLPTFQFELTASLQEQHGLRA-LVRARRHDGQW 237 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 238 RWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 292 >gi|117921773|ref|YP_870965.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] gi|117614105|gb|ABK49559.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3] Length = 1122 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 103/519 (19%), Positives = 206/519 (39%), Gaps = 27/519 (5%) Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 LS E+ ++ + G + N + + + + + G Sbjct: 270 LSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELL---GANVKK 326 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + ++ ++ I + R ++ + + + Sbjct: 327 IVPEAIRPHHDGYLARYAQTREAQIIGTGR--EVEAQHKAGHLVPVRLSIGHVMQGKAHY 384 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFG 486 G + +++++I + S++ GIA + EG ++ + AV + G Sbjct: 385 FVGFISDLSQRNEMEQELKINEAKFRSLITNIP-GIAYRCKSTEGWPMVFISDAVQNITG 443 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 YP ED F + I + T + + L Sbjct: 444 YPAEDFELPHPKRFFSDLYHP---DDIETIYAQAQPPTFSMEYRIIRADGGVRWLFEHGN 500 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E K+ + L AK AE+ ++ ++ FLA +SHEIRTP+ A Sbjct: 501 YILDETSKEVWIDGFLMDITERKEMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMNA 560 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIGFS+++ + + + I+RS +L ++ND+LD +K++ GK+ L Sbjct: 561 IIGFSDILLESVL----DLEQQKQLSTINRSAKSLLHLLNDVLDSAKLDKGKLELENRVF 616 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 L + + IS + L A ++R+ + A + + ++Q+ +N++ NA+ FT Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDVAPTMAANFIGSPERIRQVLINLIGNAVKFTCE 676 Query: 722 GGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G + + T ++ + DTG+GM+ +L + + F Q S + GTGLG Sbjct: 677 G-TVTVRVFPQDTTQDTTKITFEIIDTGIGMSPEQLNRVFEAFAQADASMSRKYGGTGLG 735 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++K +V+ G+ ST +G+ PL +S P Sbjct: 736 TTISKQLVELMGGELTAESTLGQGSTFRFTIPLQPSSEP 774 Score = 41.9 bits (97), Expect = 0.41, Method: Composition-based stats. Identities = 22/243 (9%), Positives = 68/243 (27%), Gaps = 20/243 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY-- 144 ID G + +++ + +G +++G + + I P + ++ + + Sbjct: 295 IDGQGIIVNVNKAVTTILGWSPAELLGANVKKIV-PEAIRPHHDGYLARYAQTREAQIIG 353 Query: 145 --GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + G VP+ L+ + + F GF + N+ K + Sbjct: 354 TGREVEAQHKAGHL--VPVRLSIGHVMQGKAHYFVGF-----ISDLSQRNEMEQELKINE 406 Query: 202 KKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEK 258 KF L + E + + ++ + L D+ + Sbjct: 407 AKFRSLITNIPGIAYRCKSTEGWPMVFISDAVQNITGYPAEDFELPHPKRFFSDLYHPDD 466 Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ++ + + + ++ + + + + + + Sbjct: 467 IETIYAQAQPPTFSMEYRIIRADGGVRWLFEHGNYILDETSKEVWIDGFLMDITERKEME 526 Query: 317 EGE 319 + Sbjct: 527 QDL 529 >gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822] Length = 1200 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 96/377 (25%), Positives = 173/377 (45%), Gaps = 17/377 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLE 502 + + + ++D I + + + K+ G + + Sbjct: 570 ADLRESEERYSLAVSGSNDAIWDWDLRTNSVYYSPVWMKISGEDNYYYSNCWSLWQENIH 629 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 ++ + L E+ + + + K L T+ Sbjct: 630 SEDLPLVLSSIQNHLEGKNP-IYEQTYRIKHCQGHYIWVEAKAKCLHDREGKPYRMVGTI 688 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ KQ + +L AK+ AE + KS F+A +SHEIRTP+ AI+GF E++ N Sbjct: 689 TDITAKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELLLNIH---- 744 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 +PR + Y I SG +L ++ND+LD+SKIE+GK+ L++EP++L E + + + Sbjct: 745 NDPRTLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFSTQ 804 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-GQIIISTT--HTSN 734 A K++ + T F N+P ++ D ++QI NI+ NA+ FT G ++ + + T+N Sbjct: 805 AQTKKLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLATNN 864 Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + V DTG+G+ + ++ F Q + GTGLGL + K + + G+ Sbjct: 865 NYIQLKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGGQI 924 Query: 793 YIFSTPAKGTLIEIIFP 809 + S KG++ +IFP Sbjct: 925 ILQSELGKGSIFTLIFP 941 >gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15] gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15] Length = 968 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 112/640 (17%), Positives = 229/640 (35%), Gaps = 53/640 (8%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + ++ F Q + +++ + + L Sbjct: 13 ALMRLLPRDATYTPGDQRAFLSQFTVWTEDFQRELTIDEFPIVELCRTRQKLEKRRLGLR 72 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + F I+ + T + ++A +E E Sbjct: 73 QPVTGTRLVFEVISEPVI----HDETGEFLGGIVIFKDITEFTKQIAAQIEENEKQFEYI 128 Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + P+ + + +G + + + T + L P + Sbjct: 129 ANFMPVMVWTTTPNGLHDWFSQRWYDYTGLTEDQSLGEG---WRLPFHPDDMTATKSR-W 184 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + R M + + + G + D + + Sbjct: 185 FHSLATGDEYNTEYRCQRF---DGEWRWMLGRALPFFDDDGKIVKWFGTCTDIHDLVMAR 241 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILS------TNRAVS--KLFGYPVEDILRKP 496 ++ QL ++ + +NR+ ++ R +L G + D+ Sbjct: 242 QEARRTREQLQQVIAHAKILLWAVNRDNRLVLLEGDTKWRRDGENTELLGNDIYDVFG-- 299 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLSLRIIIKKLPFSS-- 552 + EIL+ + + + + +L+ L + Sbjct: 300 ----FTGADRDRWREPIQEILNGKQQDEIVERYMSENRYFRTRLVPLLNASRIAGAEGTA 355 Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKE----------SSHKSDFLARVSHEIRTP 599 DI+E ++ +++L +K E+ S KS FLA +SHEIRTP Sbjct: 356 YVDGVIGVSMDITELREREDQLREQEKENERLLANAAAAKEASRMKSQFLANMSHEIRTP 415 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + +IG SE++ + + E A I RS N +L ++ND+LD SK+ESG++++ Sbjct: 416 IAGVIGMSELLSDMNL----DEEQKECAENIHRSANSLLTVINDILDFSKVESGRLDVEE 471 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNILSNAI 716 SL + + ++ A K ++ +++ + + R++ D ++QI N+L+N+I Sbjct: 472 VQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMGDPGRLRQILTNVLTNSI 531 Query: 717 HFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G ++ +S + +N+ V V DTG+G+ ++ +PF Q +S R G Sbjct: 532 KFTSEGSVKLSVSISQETNDSVTVNFSVIDTGIGIEEEVRKRLFQPFSQADSSTARRFGG 591 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 TGLGL ++K +V+ G+ ++ S +GT P Sbjct: 592 TGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIPFSRA 631 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 45/418 (10%), Positives = 99/418 (23%), Gaps = 36/418 (8%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 ++E F + V W +G S+ G + +G + Sbjct: 120 ENEKQFEYIANFMPV-MVWTTTPNGLHDWFSQRWYDYTGLTEDQSLGEGWRLPFHPDDMT 178 Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 L + + + +G + + ALP + + + + FG Sbjct: 179 ATKSRWFHSLATGDEYNTEYRCQRFDGE--WRWMLGRALPFFDDDGKIV--KWFGTCTDI 234 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 R +R ++ + K + + R L Sbjct: 235 HDLVMARQEARRTREQLQQVIAHAKILLWAVNRDNRLVLLEGDTKWRRDGENTELLGNDI 294 Query: 248 AHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-- 302 ++ + L + E + L N S+ + Sbjct: 295 YDVFGFTGADRDRWREPIQEILNGKQQDEIVERYMSENRYFRTRLVPLLNASRIAGAEGT 354 Query: 303 ----------LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352 + E E + + F AN S + T Sbjct: 355 AYVDGVIGVSMDITELREREDQLREQEKENERLLANAAAAKEASRMKSQFLANMSHEIRT 414 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 I G+S LL L + ++RS + + + L Sbjct: 415 P------IAGVIGMSELLSDMNLDEEQKECAENIHRSANSLLTVINDILDFSKVESGRLD 468 Query: 413 -------MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--QLCSILEAT 461 ++ + + + G+ + ++ + + +L IL Sbjct: 469 VEEVQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMGDPGRLRQILTNV 526 >gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio sp. JE062] gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio sp. JE062] Length = 817 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 123/723 (17%), Positives = 250/723 (34%), Gaps = 40/723 (5%) Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP--IYS 170 + G ++ + L ++ + L + G + L + Sbjct: 109 VAGHLPENLELSGGLSQLVEFETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLE 168 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALG-------KRLDKKFSHLHEIKKGHSSVEKEKYD 223 + +G + D A + L + G + Sbjct: 169 ASGHTAGGLAVLRLRDLTGDRQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQ 228 Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283 + + ++ + + K ++ + + Sbjct: 229 LVWVNTAYVDAVEAESTRTVVDDQIELLEAKGRNKLNMMRQTDGVYHSPMPVVAAGERRV 288 Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLF 342 + + + + T+D+ P V+ L Sbjct: 289 ---FELTDVNSEHGNAGLAQDISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQ 345 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---- 398 + N ++ L + K + + + R Sbjct: 346 FYNAAYRSLWD------------IDQSFLETKPEEGELLDALRAARKLPEQADYRGWRTK 393 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---- 454 L Q + P + + + G + + +E L Sbjct: 394 HLECYQALDAQAFWWHL-PDGRTLRVIASPHPQGGVTYFYENVTEQLDLESRFNALTRVQ 452 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHY 512 L+ ++ +A+ G + +N A ++++G E + P L N +M + Sbjct: 453 RETLDHLTEAVAVFGSNGRMRLSNPAFAEIWGLSQEFLEGAPHVNDLLDNCRELMGDSDR 512 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 E+ + + ++ E S+ + LT ++++ + L Sbjct: 513 WQELARGVTGLSDNRTSVSGRMERIDGSVIDYVTVPLPDGGTLLTFVNVTDTVNVERALH 572 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 ++ K+ F+ VS+E+R+PLT IIGF++++ + +FG L P+ EY +YI Sbjct: 573 ATNDALQEADQLKNAFIQHVSYELRSPLTTIIGFAQLLGDAKFGDLS-PKQEEYTDYILS 631 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 S + +L I+ND+LD++ +++G M L V + + VSEA+ ++ E I +RT + Sbjct: 632 SSSALLHIINDILDLATVDAGIMELEISEVDVAQTVSEAVEGLKDRLVESDITLRTHMPD 691 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +I + AD R ++Q+ N+LSNAI ++ GG + IS N E+ R++D G G+ Sbjct: 692 DIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDISCQREEN-EIRFRIKDHGAGIPQEM 750 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 LE+ F + +G GLGL + K+ V+ + G I S +GT ++ FPL Sbjct: 751 LEQVFSRF--VGRGAGGNRQGVGLGLSIVKSFVELHGGTVDITSEEGQGTTVDCTFPLEP 808 Query: 813 TSH 815 H Sbjct: 809 HIH 811 Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 45/421 (10%), Positives = 109/421 (25%), Gaps = 38/421 (9%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMK 237 I+ + + D A RL+ L E + V + P + Sbjct: 69 ILQLRQDRADAMARIDRLE----SLLETEDSLLLVWDGEAKHPGVAGHLPENLELSGGLS 124 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 V T + L+ L E + L + Sbjct: 125 QLVEFETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLEASGHTAGGLAVLRLRD 184 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356 + + + E + +D P P + HG L + N ++ Sbjct: 185 LTGDRQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQLVWVNTAY-------- 236 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 VD +E + + D +L + + + R + +A Sbjct: 237 VDAVEAESTRTVVDDQIELLEAKGRNKLNMMRQTDGVYHSPM----------PVVAAGER 286 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + G+ + + + ++ + L+ +A+ + + Sbjct: 287 RVFELTDVNSEHGNAGLAQDISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQF 346 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KIT 529 N A L+ + KP L + + LE + Sbjct: 347 YNAAYRSLWDIDQSFLETKPEEGELLDALRAARKLPEQADYRGWRTKHLECYQALDAQAF 406 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + L + + +++E +++ + ++ + H ++ + Sbjct: 407 WWHLPDGRTLRVIASPHP---QGGVTYFYENVTEQLDLESRFNALTRVQRETLDHLTEAV 463 Query: 590 A 590 A Sbjct: 464 A 464 >gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 1040 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 136/754 (18%), Positives = 260/754 (34%), Gaps = 113/754 (14%) Query: 75 VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HI 133 VF I +D + + + K G +IG + ++ P+ + Sbjct: 77 VFHAISHPTII---LDENQIILSANPATAKAFGLDTPDLIGRKCTELFHATWCTPDRCPM 133 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 ++ +N G L ++ P+ + + I+H+ Sbjct: 134 QEVKMTRNPAEGIMIS-----ETLGRYFLVSCTPVLNTTGDVE-----KIIHIATDITQQ 183 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + L + S L ++ + Q+ N+V S+ + Sbjct: 184 IKAEQTLQRSDSILSTLQ----------FVTTELQNSHRFEETINRVLSMLGTVLEVNRA 233 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 E + NL + Y + + SL Sbjct: 234 YIVECQAV----------DTKTPFTNLRYLWQDPYALSKKQKPLFQEPLSDRGERASLLK 283 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLD 371 ++ N +T S I A ++++L Sbjct: 284 TLEK---------------------------NLVLQRITNDTSGAERAILQAAHITSILA 316 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P + + + ++ E A Sbjct: 317 IPINIEKKWWGFIGFDDCRNDRSWTRTEIEALRSAAETLGAAIIH--------------- 361 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + K++ + ++L A D + ++++EG+ L + + P + Sbjct: 362 ---------QRTTLKLKESEARNGAMLNALPDMLFVLDKEGVCLDFHARNNNEPHPPAKQ 412 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + K + S + H + E+ + E + K I + L Sbjct: 413 FIGKSLKEIFPEAHSSALQHLIHEVSESGAPKIHEYQM---KRSGKTSHYEIRVVPLGTD 469 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKK--------------IAEKESSHKSDFLARVSHEIR 597 + ++++ K+ +NKL + A++ S KS+FLA +SHEIR Sbjct: 470 K-TLNIVRNMTDQKETENKLLRTNRKLENASRKAKKLAEQAQEASKAKSEFLANISHEIR 528 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ +IG + ++ P + YA I S +LD++ND+LD+SKIE+GK+ L Sbjct: 529 TPMNGVIGMTGLLLETDLTP----QQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTL 584 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716 L E + + + + A +K + S IP R+ D ++QI +NI NA+ Sbjct: 585 EILDFDLQELMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAV 644 Query: 717 HFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G I ++ +++V+LR +RDTG+G+ +++ + F QI S + G Sbjct: 645 KFTSKGEIAIYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGG 704 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 TGLGL +AK +V+ G + ST +G+L Sbjct: 705 TGLGLSIAKDLVELMQGSIGVESTVNQGSLFWFT 738 >gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] Length = 882 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 97/375 (25%), Positives = 171/375 (45%), Gaps = 16/375 (4%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + + ++EA + I + + + N + + G + L Sbjct: 369 RNEARASEARYRGMIEAFDGLMYICSPDRHLEFMNERLIERTGRDGTGGICHQVLHDLPA 428 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDIS 562 P + ++ S ++ + + ++ +S + D++ Sbjct: 429 PCPWCH--GVESFEGKSVQWEWN-----SPEDGRWYQVFNTTVENAYGTSSKLAMITDVT 481 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + L A AE+ + KS+FL+ +SHEIRTP+ +IG +++++ N Sbjct: 482 ERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTEL----NAE 537 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY + + G +L ++ND+LDISKIE+G M L E SL +++ + + A EK Sbjct: 538 QREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAREK 597 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740 + ++ A ++P +L D KQI LN+L NA+ FT GG I ++ + + Sbjct: 598 ALRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPVAPPLFQ 657 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTGVG+ LE+ KPF Q+ S + GTGLGL +++ + + G I STP Sbjct: 658 MAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIESTP 717 Query: 799 AKGTLIEIIFPLYDT 813 G+ + PL Sbjct: 718 GVGSCFTLTLPLSPA 732 >gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium DSM 319] Length = 1012 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 108/408 (26%), Positives = 200/408 (49%), Gaps = 21/408 (5%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 E G + D + K+ S+L S+G+ + EG +++ N +K+ Sbjct: 471 GEVQEVIGSIVDITDLHEAREKLAKSESMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKI 530 Query: 485 FGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLL 539 P + +L + + + + L ++ + +G E+KL Sbjct: 531 LNVPYDQMLSVNPFGLDWEIIHPDGTPFALEDIPSVRCLHTKEPVRNTVMGIYLNEKKLT 590 Query: 540 SLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFL 589 L + + L S +T +DI++ ++++ L H+ K+ AEK + KS+FL Sbjct: 591 WLSVNAEPLQESKYYKGVVVTFYDITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEFL 650 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 ++VSHE+RTPL +I+G+++ I ++ + + I ++GN +L ++N+ LD+SK Sbjct: 651 SKVSHELRTPLNSILGYAQ-ILEEQGEKDLTEKQLNRIRKILKAGNHLLYLINETLDLSK 709 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708 IESG + ++ EPVS+ EA+ +A+ +++ A +K ++ T F I D +QI Sbjct: 710 IESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHAYQEVFIEVDELRFQQIL 769 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 LN+L+NAI ++P+ I I T T + V + + D G G+ EL + +PF ++ + Sbjct: 770 LNLLTNAIKYSPAYRDITIYTDITQH-HVTISIEDKGFGIPASELNRIFEPFYRV---NR 825 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +GTG+GL L K +V G + S KG+ + FP+ P Sbjct: 826 LEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFPIVHPPVP 873 Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 60/162 (37%), Gaps = 8/162 (4%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + R+ +++ S+ + + ++ G I + N +L GY Sbjct: 230 LLIVFLLVAAFKRQEEVRESQLKEEYYQSLFNYNPNIVCAVDLYGNIQTINPKGIELTGY 289 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + + + PF + + Y+ + LS D ++ K+ + + + + Sbjct: 290 TLHQMEKIPFPYMFREAEQA--EEYMWKSLSGD---SVYYEATLIRKDNQPVYVEVTQMP 344 Query: 548 L---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + D+++ K+ + +L +K ++ S + Sbjct: 345 IIVHGQIKGSYVIAKDVTDRKKAQQQLLDLQKDLKRTLSQQD 386 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 46/336 (13%), Positives = 99/336 (29%), Gaps = 24/336 (7%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340 Q ++ F ++ E + P GN Sbjct: 216 QAPFSNIIASITITLLIVFLLVAAFKRQEEVRESQLKEEYYQSLFNYNPNIVCAVDLYGN 275 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + NP + LT Y + + + + M + A L Sbjct: 276 IQTINPKGIELTGYT-------LHQMEKIPFPYMFREAEQAEEYMWKSLSGDSVYYEATL 328 Query: 401 HTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 I+ + + +T +P + I + D + ++++ L L Sbjct: 329 --IRKDNQPVYVEVTQMPIIV---HGQIKGSYVIAKDVTDRKKAQQQLLDLQKDLKRTLS 383 Query: 460 ATSDGI--AIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I + N +G I + + GY D++ K FL ++ Y + Sbjct: 384 QQDGAIFKFVKNDKGYIHTMCEGKMVREMGYEEIDVVGKTLEEFLPESYAKENKRYYEKA 443 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + L + + + I ++ DI++ + + KL+ ++ Sbjct: 444 WAGEKVS---YEVLLN--DFAYYTKLIPHIYKGEVQEVIGSIVDITDLHEAREKLAKSES 498 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + S S+ V H++ L A ++ I N Sbjct: 499 MYRSVLSTMSE--GVVFHDLEGNLIAANAYAAKILN 532 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 37/377 (9%), Positives = 101/377 (26%), Gaps = 25/377 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145 +D +G ++ I+ + + G ++ + + + ++ Y Sbjct: 270 VDLYGNIQTINPKGIELTGYTL-----HQMEKIPFPYMFREAEQAEEYMWKSLSGDSVYY 324 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + TL + V +++ +PI + + G + I + L K Sbjct: 325 EATLIRKDN--QPVYVEVTQMPI-IVHGQIKG--SYVIAKDVTDRKKAQQQLLDLQKDLK 379 Query: 206 HLHEIKKGHS--SVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKY 259 + G V+ +K I + M + V E + + + ++Y Sbjct: 380 RTLSQQDGAIFKFVKNDKGYIHTMCEGKMVREMGYEEIDVVGKTLEEFLPESYAKENKRY 439 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + + + + + E Sbjct: 440 YEKAWAGEKVSYEVLLNDFAYYTKLIPHIYKG--EVQEVIGSIVDITDLHEAREKLAKSE 497 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377 ++ + + GNL AN + + GL + P + Sbjct: 498 SMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKILNVPYDQMLSVNPFGLDWEIIHPDGTP 557 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A++ + R T + I N + ++ + + Sbjct: 558 -FALEDIPSVRCLHTKEPVRNTVMGIYLNEKKLTWLSVNAEPL-QESKYYKGVVVTFYDI 615 Query: 438 VDTRINKRKMEIEVMQL 454 + ++ + Q+ Sbjct: 616 TKQQEQEQDLLHSNQQM 632 >gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena turkmenica DSM 5511] Length = 883 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 102/739 (13%), Positives = 248/739 (33%), Gaps = 43/739 (5%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146 +D G ++++ + G + + + + D+ ++I + + L+ + Sbjct: 167 VDPETGRYLDVNDTACERRGYSREEFLDLTVMDLETEIPDQEAWRSFVEELRAEGQLTFD 226 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +GT V ++ + + ++E+ I + + + Sbjct: 227 GHHRRKDGTTYPVEVNTSYV---DLDKEYV----LAIARDVTKRREYERYLEDAKSQLEA 279 Query: 207 LHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 E + D F++ V A +D K + Sbjct: 280 ATEAGAVGTWEWHIPEDEMVVGTSFARTFGIEPEVASEGVPLDQFIEAIHEDDRKRVEVA 339 Query: 261 LLTSEESSLPEQEDFH--TINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYF 315 + + E+ +E++ + N + Sbjct: 340 IEEAVETCGDYEEEYRVWDADDNLRWVVARGHVECDDGEPVRFPGALTDITKRKRAELKL 399 Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + P+ V G + AN + D + + + Sbjct: 400 QQNNEQLETLFEVLPVGVVVAEADGQIIQANDIAHEIWGGDVFDAESVEEYEQYPVWDAE 459 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + L R ++ I+ + ++ E Sbjct: 460 SGERVQPDEMTLARVVNGEEVLDPDIYEIEAVDGERRVIRLEGMPVRDEHGEVTRGVATL 519 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDIL 493 + D R +R +E + +++E +G + + + + + Y ED + Sbjct: 520 TDITDRREAQRALEESERRYRTLVENFPNGAVGLFDDNLRYTAVGGQLFDRLDYDPEDRI 579 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 FT + + + L T E G L +R ++ Sbjct: 580 GYRFTELHTPDLVEELEPHFRAAL-DGEASTFEIEYQGRYLHAHTLPVRDADDEVYAG-- 636 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 L + D++E ++ + ++ E+ + F SH+++ PL + + + + + Sbjct: 637 -MLVIRDVTERREYE-------RMLEESNDRLEQFAYAASHDLQEPLRMVSSYLQ-LLER 687 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R+ + E+ + + + ++++ LL S++E+ FE VSLD+ ++E Sbjct: 688 RYDDDLDEDGQEFLEFAVDGADRMREMIDGLLKYSRVETRGDP--FETVSLDDVLTEVCD 745 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHT 732 +Q+ E I T ++PR+ D ++Q+ N+L NAI ++ +I I Sbjct: 746 DLQVMIQESNAEITTE---DLPRVEGDHGQLRQVFQNLLDNAIEYSGDDPPRIYIDAE-R 801 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ ++ V D GVG+ + ++ + F ++ + GTG+GL L + +++ + G Sbjct: 802 DGDQWLVSVEDNGVGIDPEDTDRVFEVFQRLHA--RGEHAGTGIGLALVERIIERHGGDV 859 Query: 793 YIFSTPAKGTLIEIIFPLY 811 ++ S P +G+ P+ Sbjct: 860 WVESDPGQGSTFSFTLPVA 878 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 57/519 (10%), Positives = 140/519 (26%), Gaps = 31/519 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +DA G +++ + G +++G V D + G Sbjct: 36 IYQLDAEGRFVAVNDAIVSLTGYAREELLGKHASTVIDDEDVSRIQREIYQRFTDGDREG 95 Query: 146 KTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK--RL 200 + +G + ++L L + F G G+V + L Sbjct: 96 EPLEFTARMADGETIPCELELHLLV---EDGTFQGT--IGVVRDIADRKQTEQEFREHEL 150 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEK 258 + + L+ V+ E R + + LT + + Sbjct: 151 ELFRTLLNHSNDSVLVVDPETGRYLDVNDTACERRGYSREEFLDLTVMDLETEIPDQEAW 210 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK---ESFEYLSHRNHPSLSAYF 315 + + D H + T T + Y Sbjct: 211 RSFVEELRAEGQLTFDGHHRRKDGTTYPVEVNTSYVDLDKEYVLAIARDVTKRREYERYL 270 Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ ++ + + + + + SF + E Sbjct: 271 EDAKSQLEAATEAGAVGTWEWHIPEDEMVVGT-SFARTFGIEPEVASEGVP--LDQFIEA 327 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D+ V + + TC W+ +++L E + G Sbjct: 328 IHEDDRKRVEVAIEEAVETCGDYEEEYRV--WDADDNLRWVVARGHVECDDGEPVRFPGA 385 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG------Y 487 + + + K++ QL ++ E G+ + +G I+ N +++G Sbjct: 386 LTDITKRKRAELKLQQNNEQLETLFEVLPVGVVVAEADGQIIQANDIAHEIWGGDVFDAE 445 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIK 546 VE+ + P L +++ + + E +++ L + Sbjct: 446 SVEEYEQYPVWDAESGERVQPDEMTLARVVNGEEVLDPDIYEIEAVDGERRVIRLEGMPV 505 Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + T+ DI++ ++ + L +++ Sbjct: 506 RDEHGEVTRGVATLTDITDRREAQRALEESERRYRTLVE 544 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 53/136 (38%), Gaps = 3/136 (2%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E V + +++ DGI ++ EG ++ N A+ L GY E++L K + ++ S Sbjct: 19 ERTVDRYSTLVNMVDDGIYQLDAEGRFVAVNDAIVSLTGYAREELLGKHASTVIDDEDVS 78 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564 + + + + R+ + + + + + L + DI++ Sbjct: 79 RIQREIYQRFTDGDREGEPLEFTARMADGETIPCELELHLLVEDGTFQGTIGVVRDIADR 138 Query: 565 KQEKNKLSHAKKIAEK 580 KQ + + + + Sbjct: 139 KQTEQEFREHELELFR 154 >gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1330 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 134/782 (17%), Positives = 269/782 (34%), Gaps = 76/782 (9%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F + G L E + + ++G D + + L++ T Sbjct: 431 FVGVMTPDGILIEANRTALEAAALRPADVLGKPFED---TYWWSYSPELQTQLRQAITRA 487 Query: 145 --GKTTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGK 198 G+ + + + ID PI+ GI AL + Sbjct: 488 AQGEMVRYDAIVRVREDQLITIDFTLGPIFDEAGRVKYLIPSGI--DITERKQAEIALQQ 545 Query: 199 RLDKKFSHLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + L EI+ + S + ++ ++ + Sbjct: 546 SQSQVQRQLAEIETIYQSAPIGLNILDTDLRFVRINQRLADMNGFSVEEHLGKTIRDLLP 605 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYL-- 303 D + P+L + E L + T Q + + Q++ + Sbjct: 606 DLADTAEALLRPILATGEPLLNVEIRGETPAQPGVQQIWLESFLPLKQDDRIIGISTVCE 665 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTK 353 E + F V NP+F T Sbjct: 666 EITERKQAEEALRRSEERYRTLFETMEDGFCVIEILFDANQTPIDYRFLEINPAFEQQTG 725 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + A G + P L D + + + + + Sbjct: 726 ------LHQAVGKTARQLIPNLEDFWFETYGRVALT-GEPLRFENGSAVM----NRWFEV 774 Query: 414 TFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 P + + I + + + + + +L + + G Sbjct: 775 YAFPVGQPEHHKVALLFKEISERKRLEAERQQAEIALRENEDRLRMAIASAQLGTW---- 830 Query: 471 EGIILS----TNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 + I++ + +FG P +I + F + + + L+ + Sbjct: 831 DWNIVTGKLKWDTGCKAMFGLGPDAEINMETFFAGVHPQDREQLKAMVQSRLNPASGGSF 890 Query: 526 EKITLGSTKEEKL-LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH------- 573 + ++K+ LR + ++ +S T+ DI++ KQ + Sbjct: 891 DTEYRTIGLQDKVERWLRSKGQAYYDANGNPLRFSGTVLDITQQKQAEAHREQLLQQEQA 950 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE+ + K +FLA +SHE+RTPL I+G+S+++++ + + + I+R+ Sbjct: 951 AREAAERANRIKDEFLAVLSHELRTPLNPILGWSKLLQS---PQISAQKLQQGLATIERN 1007 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +++DLLD S+I G+++L+ ++L E + A+ V+L A K I + + Sbjct: 1008 AKQQVQLIDDLLDTSRIIRGQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSW 1067 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 + +I D+ ++Q+ N+LSNAI FTP GG+I + + ++VRDTG G+ L Sbjct: 1068 LGQIRGDVGRLQQVVWNLLSNAIKFTPPGGRITVRLSQVDR-WAQIQVRDTGKGIQPQFL 1126 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812 + F Q +S G GLGL +A+ +V+A+ G S +G ++ PL Sbjct: 1127 PHVFELFRQEDSSTTRSFGGLGLGLAIARQVVEAHGGTIMAASQGEGQGATFTVLLPLIP 1186 Query: 813 TS 814 + Sbjct: 1187 AA 1188 Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats. Identities = 68/561 (12%), Positives = 150/561 (26%), Gaps = 62/561 (11%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 + S + + L +E F FD ++ + GY K I+ +T+G A ++ Sbjct: 2 TAEGPFTSPVHQSSL-AEEAFFFD---LSLDLLAVVGLDGYFKRINPMFSQTLGYSATEL 57 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 + D + LK T + EG Y + A P R Sbjct: 58 LTSPFLDFVHPDDRAATLAEMEQLKGGTPTLAFENRYLTREGD--YRWLSWTASPQLDR- 114 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + + + ++ L G + ++F Sbjct: 115 -----AVIYCVARDVTQQKQTEIALRVSEERWQLALRGSNDGIWDWNVQTNEVFFSARWK 169 Query: 232 PHLRMKNKVSS----LTEYYAHKDDVL--KTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 L + S H DD+ + + + Sbjct: 170 TMLGYEEDEISHHLEEWAKRVHPDDLAWVMQAIQDHFAQKTPFYVAEHRVQCKDGGYKWI 229 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------------------- 326 + + + + + + ET+ Sbjct: 230 LDRGQAIWDQDGKVLRMVGSHTDVTERKTLEAALRTANETLEQRVAQRTAELEQINRSLQ 289 Query: 327 ----------DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + P F +Y + + N + L L+ D + D Sbjct: 290 ASELKFRTAIEHIPDVFVIYDAHRRIQFVNRAGLALSGGSLPDFLGRR-------DEEIF 342 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + L + TI + + E GI Sbjct: 343 PVEVTQTYLPLLQQAVATKRYQTGECTIALPNREPYTIVVQYVPLLDGNGEIQQIFGISH 402 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + Q+ IL++ + ++ +GI++ NR + D+L K Sbjct: 403 DITRRKQAEDATRRSEQQIRRILDSLFSFVGVMTPDGILIEANRTALEAAALRPADVLGK 462 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 PF + + L + ++ + + + + +E++L+++ + + + Sbjct: 463 PFEDTYWWSYSPELQTQLRQAITRAAQGEMVRYDAIVRVREDQLITIDFTLGPIFDEAGR 522 Query: 555 SLTM----HDISEWKQEKNKL 571 + DI+E KQ + L Sbjct: 523 VKYLIPSGIDITERKQAEIAL 543 Score = 112 bits (280), Expect = 3e-22, Method: Composition-based stats. Identities = 42/429 (9%), Positives = 101/429 (23%), Gaps = 37/429 (8%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + F L ++ I S ++S + H DD Sbjct: 13 QSSLAEEAFFFDLSLDLLAVVGLDGYFKRINPMFSQTLGYSATELLTSPFLDFVHPDDRA 72 Query: 255 KT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 T + L +L + + T + + + Sbjct: 73 ATLAEMEQLKGGTPTLAFENRYLTREGDYRWLSWTASPQLDRAVIYCVARDVTQQKQTEI 132 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E + + ++ + + + + Y+ + Sbjct: 133 ALRVSEERWQLALRGSNDGIWDWNVQTNEVFFSARWKTMLGYEEDEISHHLEE----WAK 188 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 D+ A + H +Q + +Q + + G Sbjct: 189 RVHPDDLAWVMQAIQDHFAQKTPFYVAEHRVQCKDGGYKWILDRGQAIWDQDGKVLRMVG 248 Query: 433 IEPEDVDTRINKRKME-------------------------IEVMQLCSILEATSDGIAI 467 + + + + + ++ + +E D I Sbjct: 249 SHTDVTERKTLEAALRTANETLEQRVAQRTAELEQINRSLQASELKFRTAIEHIPDVFVI 308 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + I NRA L G + D L + L + ++ QT E Sbjct: 309 YDAHRRIQFVNRAGLALSGGSLPDFLGRRDEEIFPVEVTQTYLPLLQQAVATKRYQTGEC 368 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + ++ + L + HDI+ KQ ++ +++ + Sbjct: 369 TIAL--PNREPYTIVVQYVPLLDGNGEIQQIFGISHDITRRKQAEDATRRSEQQIRRILD 426 Query: 584 HKSDFLARV 592 F+ + Sbjct: 427 SLFSFVGVM 435 >gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 589 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 88/420 (20%), Positives = 174/420 (41%), Gaps = 32/420 (7%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + I I +++ + E +D + + E ++ SIL Sbjct: 198 MSRITREMAKGNFDQRIEVTTSDEVGQLAQDFNYLAESLDATVT--ALFREKSKIESILA 255 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 ++G+ ++ +G ++ N A+S+ EDI+ +P + S + + Sbjct: 256 HMAEGVLAVDGQGQVILANTAISRTLAVKPEDIINRPLSEL----PFSGIPEVFASVTDS 311 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575 ++ E + I + L S + DI++ K + Sbjct: 312 GEPRSAELDL-----NGGKTCVLIHVAPLTNGAGKISGAVGVLQDITDIKNLEVW----- 361 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + D +A VSHE+RTPLT+I GF E I + Y I + Sbjct: 362 ---------RRDLVANVSHELRTPLTSIRGFIEAILDGTIS--DPEAQRHYLKVIHQETV 410 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + ++ +LLD++++E+GK+ P+ + E VS + + + +I ++ + ++P Sbjct: 411 RLTRLIRELLDLAQMEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLP 470 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 +LA+ ++Q+ N++ NAI ++P G + + + N V + V D G G+ +L Sbjct: 471 LMLANEDRMEQVLTNLVENAIRYSPPGKTVTVKAG-SDNGLVQIEVSDEGPGIPEEDLPY 529 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 F ++ S+ GTGLGL + K +V+A+ GK + S P +G+ P + Sbjct: 530 IWDRFHRVEKSRSRSLGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPAVPAEN 589 >gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 1090 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 113/534 (21%), Positives = 210/534 (39%), Gaps = 44/534 (8%) Query: 318 GENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDA 372 + + P + S N + L KY D + G + L+ Sbjct: 292 QADYIGHLYNAVPEGIALISVDKPYRFLQLNRQGMQLLKYPEGDVEDTVLGEPIENLIHP 351 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + +D R+ ++ I ++ E + Sbjct: 352 DDYDRLVKM--IETADTDGRKSTFEFRVQR---AGGEYFWVSGILERTFDENGEPV-FVA 405 Query: 433 IEPEDVDTRINKRKMEIEVMQLC-SILEATSDG---IAIIN---REGIILSTNRAVSKLF 485 + + ++ +++ E E++Q +++ A S+ I IN + + Sbjct: 406 AFHDVTEEKLAEQEAEREILQERITLVGAISNAYPVIISINLTEDTLNFIYVKPGLMIGL 465 Query: 486 GYPVEDI-LRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLL 539 G L + + + YLTE L + + + + Sbjct: 466 GQQKSYSRLFQDMALTVHPEYADEFRHRFGTEYLTETLGHEKDEVF-LEVRQKLTDGRYH 524 Query: 540 SLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLA 590 + I L ++ ++ + + L A A + K FL+ Sbjct: 525 WISTQIINVDNPYSNDKLAILISR-RTDEQRYEEEQQRQALQTALDNANAANKAKGQFLS 583 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SH+IRTP+ AIIG S + R +E I+ SG +L ++ND+LD+SKI Sbjct: 584 NMSHDIRTPMNAIIGMSAIASAHLD---DRERIMECLGKINLSGKHLLSLINDILDMSKI 640 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIAL 709 ESGK++L EP +L E +++ + L++ A+ +RI ++ + ++ D ++Q+ + Sbjct: 641 ESGKLSLRKEPFNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCI 700 Query: 710 NILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 NILSNA+ +TP GG+I I + + I DTG+GM L+K PF + Sbjct: 701 NILSNAVKYTPEGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERAS 760 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 +S + GTGLG+ + K ++D G + S+P KG++ + PL D Sbjct: 761 DSTSSKMTGTGLGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLKLQDVSQD 814 >gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium limicola DSM 245] Length = 590 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 177/397 (44%), Gaps = 29/397 (7%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 IP + ++ + +++ + + + ++ + I + N G I Sbjct: 217 VIPVHRDDEIGKLARVINFMSDEIKKK------QRQEEWYRAVFSGIREAILVTNAAGEI 270 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + N A S++F ++ +P + + + + E+++L ++K Sbjct: 271 VLVNPAASRMFRIDGAMLMFRPIRKL----SDRRLQEIIDGVHENKTALLKEEVSLATSK 326 Query: 535 EEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 ++L + + + K S +DI+ + + + DF++ VS Sbjct: 327 GTRILQISSMPVMKNSRSDGTVFVFNDITRLRNLE--------------RIRRDFVSSVS 372 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPLT+I G++E + + I + + +VND+LD+S+IESG Sbjct: 373 HELRTPLTSIKGYTETLLEGAMH--DPEHATAFLQIILKESEQLTALVNDVLDLSRIESG 430 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K+ HF PV L + + + ++ +K+I + + ++IP + AD ++ + N+L Sbjct: 431 KIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDDIPEVTADAGYLEIVVRNLLD 490 Query: 714 NAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA+ + G++ IS + +V + + D G+G+ +L++ + F ++ ++ Sbjct: 491 NAVKYVDDRNGRVRISV-FRTGMDVRMEIEDNGIGIAPADLDRIFERFYRVDKARSRTLG 549 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K +V + G + S +G++ I P Sbjct: 550 GTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLP 586 >gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891] gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891] Length = 1037 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 174/413 (42%), Gaps = 27/413 (6%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------QLCSILEATSDGIAIINR 470 A + + + + + K++ + +L +IL+ +DGI IN Sbjct: 329 TIAATINQLLQRVHTNTISIQRLNEEVKLKQQSEVSQKLVSQKLEAILDTAADGIITIND 388 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT------ 524 +G ILS N+A ++FGY + + P + + S+ ++ + + Sbjct: 389 KGKILSFNQAAQRMFGYLETEAIGMPIEKLMPKKYASMHQVFIDRYRATGRSKIIGVKTK 448 Query: 525 ---LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAE 579 L + K +L + + I ++ + + DIS+ KQ +N L AK+ AE Sbjct: 449 DGRLGREFQAINKAGELFPILLSIAQVETNDGVIYSGLVKDISQQKQAENALIAAKEEAE 508 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + KS+FLA +SHEIRTP+ IIG ++ + + Y S +L Sbjct: 509 QAARSKSEFLAVMSHEIRTPMNGIIGMLDL--LLENNLNTSQSHQAYLA--HTSALSLLG 564 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698 ++ND+LD SKI++ K+ L + +L + + + + I IL Sbjct: 565 LLNDILDFSKIDADKLELERQHFNLRHMLGDFAEQMAASLTNPNVEIILDMVQVEHSMIL 624 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEK 755 AD ++QI N++SNA+ FT G I + L ++D+G+G+ L Sbjct: 625 ADSTRIRQIFSNLVSNALKFTEQGEVVITVRLEENDENTWQLNASIKDSGIGIPQDRLNS 684 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 F Q+ S R GTGLGL + K + A G + S KG+ Sbjct: 685 LFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTVSSEAGKGSEFSFHI 737 >gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56'] gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56'] Length = 669 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 111/544 (20%), Positives = 206/544 (37%), Gaps = 51/544 (9%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353 + P + ++ +D P V HG + + N + Sbjct: 4 EISSVERLSAPEQAPHGPSARQLDDSTFRMLIDAAPDAMVVVDEHGRIVFVNVQTERMFG 63 Query: 354 YKSVDDIEIAGGL--------------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 Y I A + ST + AP+ + + R D + Sbjct: 64 YTRGGLIGQAIEILLPERFQRSHVANRSTFIAAPRARPMGSGLELFGRRRDGSEFPVEIS 123 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L + + + D + + + L S +E Sbjct: 124 LSPLATEGGT-------------------LFSSAIRDISDRKRLEAVAQRTSDLLRSAVE 164 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFG---------YPVEDILRKPFTVFLEQNTPSVMN 510 + A+ + + + N G ++I+ + L Sbjct: 165 SFQGAFAVFDAQDRLALCNSVYRHWLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPA 224 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + +L+ + T + + L ++ T+ D++ + + Sbjct: 225 AFRERMLAYHAEP--DGTLDLCTSDGRSLRAT---ERRTAEGGTVCTLWDMTGDVHREEE 279 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A+ IAE SS KS+FLA +SHE+RTPL AI+GF++++ R PL + R E ++ Sbjct: 280 LRKARGIAEAASSAKSEFLASMSHELRTPLNAILGFAQLLHRDRKTPLTD-RQKERIEHV 338 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS- 689 + G +L +++D+LD+S+IE+G++ + EPV++ E + E + + A I I + Sbjct: 339 LKGGEHLLKLIDDILDLSRIEAGRVTVSIEPVNVPEVLIEVKTTLDPMAQRAGIEIALAP 398 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P+I AD QI +N SNAI + GG+ I+ + + V + V D G+G+ Sbjct: 399 LPAELPKITADRTRFAQILMNYGSNAIKYGRRGGRATIAVSMPEDGVVKICVIDNGIGIP 458 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + K +PF + + EGTG+GL + K + + G S P +G+ I P Sbjct: 459 QEQHAKIFQPFQRA-GQETGPIEGTGIGLAITKRLAELMGGGVGFASIPGEGSEFWIELP 517 Query: 810 LYDT 813 + Sbjct: 518 AHQE 521 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 23/299 (7%), Positives = 68/299 (22%), Gaps = 18/299 (6%) Query: 45 CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104 H+ + Q + ++TF +D HG + ++ + + Sbjct: 2 THEISSVERLSAPEQAPHGPSARQLDDSTFRMLIDAAPDAMV-VVDEHGRIVFVNVQTER 60 Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWYGKTTL-WPIEGTNLYV 159 G +IG + + + + + G +G+ Sbjct: 61 MFGYTRGGLIGQAIEILLPERFQRSHVANRSTFIAAPRARPMGSGLELFGRRRDGS--EF 118 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 P++++ P+ + + A+ +R E +G +V Sbjct: 119 PVEISLSPLATEGGTL----FSSAIRDISDRKRLEAVAQRTSDLLRSAVESFQGAFAVFD 174 Query: 220 EKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 + + S + + + Sbjct: 175 AQDRLALCNSVYRHWLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPAAFRERMLAYH 234 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN--HPSLSAYFDEGENLTPETVDKCPIP 332 + +L+ + + E + + + +E + Sbjct: 235 AEPDGTLDLCTSDGRSLRATERRTAEGGTVCTLWDMTGDVHREEELRKARGIAEAASSA 293 >gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 853 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 106/632 (16%), Positives = 209/632 (33%), Gaps = 27/632 (4%) Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK--VSSLTEYY 247 A ++ + E + L ++ + LT Sbjct: 80 RKQALAALGESQARYQGVVENAPAAIFIVNAAGRFLDVNPKACRLTGYDRETLLGLTIGE 139 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 D + L +E + + + + L L Sbjct: 140 VLDQDSWQAVATYLADFKEGARIAEVSGRRRDGAKRWWSVSAVRLDGER-----VLGFAA 194 Query: 308 HPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + D+ ++ E V + F N ++ LT + ++D+ Sbjct: 195 DVTERRRRDDARSVFYELVQNAEHVVVFKDRDLRYVMVNRAYQNLTG-RPLEDVVGKTDP 253 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + ++ F + Sbjct: 254 EAFEGLSAPEQIARYVENDRRALNLPRGRTLTSEEEMRGEGGGVRTFLTKKFPVYAEDGR 313 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF- 485 + + E + + + ++ + + E I + G I+ NR F Sbjct: 314 LLGVATMASEITERKKAEARLRESEGRYRLLAELAPVSIMAFDAAGRIIFVNRRHLDTFA 373 Query: 486 --GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542 + L + T + + L +L T ++LR Sbjct: 374 AGRRDRDYFLGRRLTDL-PGIVRAGIAGKLAPLLEGREVDLEAVHFPEFTGGHSGYVNLR 432 Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + S L D++ + + L+ A+ A+ + KS+FLA +SHEIRTPL Sbjct: 433 GVPFLRDDGSLAGGILIREDVTARIEMERTLTAARNEAQAANQTKSEFLANMSHEIRTPL 492 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G +++++ EYA+ +S + ++ D+LD+S++E+GKM + E Sbjct: 493 NGVLGMLQLLRDTPLTA----EQGEYADLAIQSSRRLTRLLADILDLSRVEAGKMAILCE 548 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719 L AV+EA+ L + A + + +R +P R+ D +Q+ N++ NA+ FT Sbjct: 549 SFELARAVTEAVELFRPSARQAGVELRVYVDAALPARVAGDAARFQQVLANLVGNALKFT 608 Query: 720 PSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 G + + + V DTG G+ + +L + +PF Q +G Sbjct: 609 AKGS-VAVEAYPLPPRREGETRALFSVADTGCGIADADLTRLFEPFVQGSRGYSRNAQGA 667 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GLGL + K++V+ G + S +GT I Sbjct: 668 GLGLSICKSLVELMGGNIAVDSEVGRGTTIFF 699 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 37/381 (9%), Positives = 98/381 (25%), Gaps = 23/381 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTW 143 + ++A G +++ + + G ++G+ + +V L D + L ++ Sbjct: 105 IFIVNAAGRFLDVNPKACRLTGYDRETLLGLTIGEV---LDQDSWQAVATYLADFKEGAR 161 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G + + + GF V R +D R++ L + Sbjct: 162 IAEVSGRRRDGAKRWWSV----SAVRLDGERVLGFA--ADVTERRRRDDARSVFYELVQN 215 Query: 204 FSHLHEIKKG-------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 H+ K + + + +S+ + + ++ + Sbjct: 216 AEHVVVFKDRDLRYVMVNRAYQNLTGRPLEDVVGKTDPEAFEGLSAPEQIARYVENDRRA 275 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 P + S + + + K + + A Sbjct: 276 LNLPRGRTLTSEEEMRGEGGGVRTFLTKKFPVYAEDGRLLGVATMASEITERKKAEARLR 335 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E E + P+ + G + + N L D L D P + Sbjct: 336 ESEGRYRLLAELAPVSIMAFDAAGRIIFVNRRHLDTFAAGRRD--RDYFLGRRLTDLPGI 393 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + A ++ +S + I Sbjct: 394 VRAGIAGKLAPLL-EGREVDLEAVHFP-EFTGGHSGYVNLRGVPFLRDDGSLAGGILIRE 451 Query: 436 EDVDTRINKRKMEIEVMQLCS 456 + +R + + + Sbjct: 452 DVTARIEMERTLTAARNEAQA 472 >gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1082 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 135/651 (20%), Positives = 244/651 (37%), Gaps = 30/651 (4%) Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 F G+ V ++ L + L + + + + + Sbjct: 115 FGGWPAVLLSAAVAGAVRLWLGGVGAITGLAGLALTAVA---APLLAGAMERRAVRRKGG 171 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 V A L L ++ D + Sbjct: 172 AGVGKGAGKAAFGFGRLAVFGLALTPLTLAAFLLLPDSRLALRVLEEAALPLIAFTSLGI 231 Query: 298 ESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPSFLL 350 + R H A E L D V G L YAN + + Sbjct: 232 GLLGTMLAREHRRFADEAALAESAALFRAVFDSSVDSLLVVRVGADGAFTLRYANTAAVH 291 Query: 351 LTKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + L LL ++ A + T R Sbjct: 292 ELGALAAGGRPQPVEGQPLDALLPPDLVARVTADLHACIAAGAPT------RFEEQHSQG 345 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + ++ + + + +R + + + + +D I Sbjct: 346 GVTRWWEVSQVPIRDESGAIVMLSVGARDITRRHEAERAIRVSEARYRQLARGVTDIIGR 405 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 I +G+ + + G P +++ +P + + L+ + R TL+ Sbjct: 406 IGLDGVRRFCSESTRDRLGSPPAELVGRPLVERMHPDDRDAAAAGLSRL--TPERPTLKT 463 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + L ++ + Y DI+ K + +L A++ AE S Sbjct: 464 TYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRKIMEAELQDARQAAEAASR 523 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K++FLA +SHE+RTP+ A+IGF+++I + GP+GN +Y ++A I SG +L+++N+ Sbjct: 524 GKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFAINIRDSGQHLLELINE 583 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD + E+G++ L EPV LD A + AI L+ A I I + D R Sbjct: 584 ILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIAAKVEPAARHMRGDERR 643 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI LN+LSNA+ +TP+GG + ++T + ++L VRDTGVG+ ELE+ + ++ Sbjct: 644 IRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTGVGIPEPELERVPPAYTRV 703 Query: 764 PN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ R EG+GLGLPL + +V+ + G + S +GT + + FP Sbjct: 704 DGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLASRVGRGTTVTVHFP 754 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 33/383 (8%), Positives = 77/383 (20%), Gaps = 19/383 (4%) Query: 88 NIDAHGYLK--EISEEL-----PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKR 139 + A G + G + G L + + + Sbjct: 273 RVGADGAFTLRYANTAAVHELGALAAGGRPQPVEGQPLDALLPPDLVARVTADLHACIAA 332 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + +G +++ +PI + G ++ + Sbjct: 333 GAPTRFEEQ--HSQGGVTRWW-EVSQVPIRDESGAIV-MLSVG-ARDITRRHEAERAIRV 387 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDV-LK 255 + ++ L V H DD Sbjct: 388 SEARYRQLARGVTDIIGRIGLDGVRRFCSESTRDRLGSPPAELVGRPLVERMHPDDRDAA 447 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 LT E +L + + + ++ EY+S + Sbjct: 448 AAGLSRLTPERPTLKTTYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRKIM 507 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + + + + + + + E G + Sbjct: 508 EAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFA 567 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + +L + A + + E F P Sbjct: 568 INIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIA 627 Query: 436 EDVDTRINKRKMEIEVMQLCSIL 458 V+ R M + ++ IL Sbjct: 628 AKVEP--AARHMRGDERRIRQIL 648 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 25/340 (7%), Positives = 74/340 (21%), Gaps = 16/340 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 I G + SE +G+ +++G L + D L + T Sbjct: 405 RIGLDGVRRFCSESTRDRLGSPPAELVGRPLVERMHPDDRDAAAAGLSRLTPERPTLKTT 464 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 ++ + A + + + A + + Sbjct: 465 YRLRHA-DGRWLWFEAAVRLVTDDWGAPQEY--VSVERDITSRKIMEAELQDARQAAEAA 521 Query: 208 HEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K + + R +Y ++ + ++ L Sbjct: 522 SRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFAINIRDSGQHLLELI 581 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN------HPSLSAYFDEG 318 E + + + L+ + P+ + Sbjct: 582 NEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIAAKVEPAARHMRGDE 641 Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL---LTKYKSVDDIEIAGGLSTLLDAPK 374 + ++ + + G++ L + + L + A Sbjct: 642 RRIRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTGVGIPEPELERVPPAYT 701 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 D + R + + + ++ + + Sbjct: 702 RVDGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLAS 741 >gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 1314 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 148/787 (18%), Positives = 288/787 (36%), Gaps = 67/787 (8%) Query: 47 DSFEQSNFTDQNQ---ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103 +S ++ F+ +Q E+++ + N F R R L I++ Sbjct: 577 ESPQEEAFSLTDQDLVEAIAAQLGVAWSNALRFQASERAAR---------RLDLINQASQ 627 Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 + + + K + + DV + ++ + L++ + + G + V L Sbjct: 628 RLTFSPSLKTVAEVVLDVCFAM-LNAHKGGVYLVENEGALR----PLALRGVSRAVEKSL 682 Query: 164 AALPIYSRNREFSG-FRGFGIVHVNRVDNDPRAL---GKRLDKKFSHLHEIKKGHSSVEK 219 P+ FS +R V + V NDPR + G ++ + + Sbjct: 683 QEKPLSVHTGLFSTVYRTRRAVFIPDVKNDPRVVFIPGYTGEQIYCFPLISGNRVVGMVD 742 Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTI 278 +++ +++ + E D + +++ +L + + L D T+ Sbjct: 743 VDAIPADEETMTLLHTFFSRIGAALENILLYDQTVHLSQQRAMLLNVSTQLATALDLPTV 802 Query: 279 NLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFF 334 Q S + HP + + + V PI Sbjct: 803 QAEILVSAQSVLETDVVWLFSISQNIFTLLAGHPPVWKAGNVILQPGISMPVSHNPILSQ 862 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 V + N + + + GL T++ AP L + I ++ Sbjct: 863 VLEEKKIQIVNRG-------DTPNTLLQNKGLETMVIAPLLVGEDPIGLLVWGSRQPNFF 915 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 A +L IQ + + E ++ E + Sbjct: 916 AEDDKLTLIQGVANQAAIALHRGMLNQRLQRHAEELAEMVEERT------AQLRAEKERT 969 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++L+A +GI +++ +G L N A + GY + ++ +L++N ++ Y Sbjct: 970 QAVLDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVELQVGSPWRWLDENEGNLFKTYQN 1029 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 + L EK G + + + + + T+ DI+ K Sbjct: 1030 REI---LSTRWEKEIHGWRRNGAPFDAILTLTPVHDEDGNVIKHVGTLQDITRLK----- 1081 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + KS F++ VSHE+RTPLT+I ++E + R Y + Sbjct: 1082 ---------ELDRLKSQFVSNVSHELRTPLTSIKLYAEQL-----PTASAERSARYLAAL 1127 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 R + +V DLL IS+++ GK + + L V + + ++ A+ + + + Sbjct: 1128 QRETARLEAMVEDLLTISRLDLGKTRIQISALPLAPFVQQIVEDRRMLAHSRGLTLHFQQ 1187 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRVRDTGVGM 748 ++P + D R V QI N+L+NAI++TP+G I IS H + L + D GVG+ Sbjct: 1188 DKHLPPVAGDERFVMQIVTNLLTNAINYTPAGRNIFISVRHDPQEAGFLRLTIEDEGVGI 1247 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E+ + F + ++++ GTGLGL + K MV+ GK +I S KGT + Sbjct: 1248 PPEEMPHLFERFFRGSAGRKLQVPGTGLGLAIVKEMVERLNGKIHIESEVGKGTKAIVWL 1307 Query: 809 PLYDTSH 815 P++ H Sbjct: 1308 PVWKDEH 1314 Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 6/132 (4%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G ++ + I + ++ L G ED+L + + ++ + +L Sbjct: 3 GFLTLSPDLTITQWSEPLAHLTGKTEEDVLGRNLFDLFPELRTRGVDVAVHHVLETGAPF 62 Query: 524 TLEKIT---LGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 L + + + L +T+ D+S+ + +L ++ Sbjct: 63 FLSHTLHRNILPAANGAAVMQSGQVYPLFKGEEVVGVIMTVQDVSDRAAVEEELRQTIRL 122 Query: 578 AEKESSHKSDFL 589 + ++ +S L Sbjct: 123 LQAQNDIRSALL 134 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 12/232 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNT-WYGK 146 + + + SE L G ++G L D+ L + + +L+ + Sbjct: 7 LSPDLTITQWSEPLAHLTGKTEEDVLGRNLFDLFPELRTRGVDVAVHHVLETGAPFFLSH 66 Query: 147 TTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 T I + + P+ F G G++ + +D A+ + L + Sbjct: 67 TLHRNILPAANGAAVMQSGQVYPL------FKGEEVVGVIMTVQDVSDRAAVEEELRQTI 120 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L S++ E+ Q L + + V L Y ++ + L S Sbjct: 121 RLLQAQNDIRSALLDEETGALEQTIVQQALTVSDAV--LVHLYLYEGEQLSPAASASPDS 178 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + + LP + + Q + + + +L + Sbjct: 179 QATVLPPEPPLLVQEVFQQGAPLHILNAFATPGYRPFHPQTQAAVALPLSAE 230 >gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1128 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 99/411 (24%), Positives = 179/411 (43%), Gaps = 17/411 (4%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 E +A+ P + + + + + R++ + SIL+ S G Sbjct: 221 QGETGVAVYNSPLPL--AISVAVATLTLLLIALGSALASRRIAHSRRWMNSILQNMSQGF 278 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +++ +G IL N A+ + +PF L + L ++L Q + Sbjct: 279 VMMDLQGRILEANPALLSWVALSPSQVQGEPFQKLLSVQDHQPLQLALQQLL---EGQPV 335 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKE 581 + + +++ + DI + L A+ AE+ Sbjct: 336 RCALSLCCLDAPPIPVQMHGNTHRDEEGQIMGIYAILTDIRAEQAAAKALRDARDAAEQA 395 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 S K +FLA +SHEIRTP+ AI+G + + N R + + +G+ +L I+ Sbjct: 396 SQAKGEFLANMSHEIRTPMNAILGMTHLCLQTDL----NERQRHFLEKVYAAGSALLRIL 451 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIE+G + + + +DE ++ L+ + A+EK+I + N+P IL D Sbjct: 452 NDILDFSKIEAGSLEIEKTSLKMDEVLASLADLMSIRADEKKIELLFHRDANLPEILVGD 511 Query: 701 LRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + Q+ +N++ NA+ FT G +I + + +V V+DTG+G+TN ++ Sbjct: 512 PLRLGQVLINLVGNALKFTEQGEVVVRIEVIQSAERQVKVRFSVKDTGIGLTNEQMSNIF 571 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + F Q +S R GTGLGL ++ +V G + STP +G+ Sbjct: 572 QSFKQADSSTTRRYGGTGLGLAISHRLVQLMGGVLKVESTPGQGSCFSFTL 622 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 12/239 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + E + L + ++ G + + P L + Sbjct: 281 MDLQGRILEANPALLSWVALSPSQVQGEPFQKLLSVQDHQPLQLALQQLLEGQPVRCALS 340 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L ++ +P+ + + G + I+ R + + Sbjct: 341 LCCLDAPP--IPVQMHGNTHRDEEGQIMGI--YAILTDIRAEQAAAKALRDARDAAEQAS 396 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEES 267 + K + + P + + ++ EK ++ Sbjct: 397 QAKGEFLANMSHEIR-------TPMNAILGMTHLCLQTDLNERQRHFLEKVYAAGSALLR 449 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L + DF I ++ + + +S R + PE + Sbjct: 450 ILNDILDFSKIEAGSLEIEKTSLKMDEVLASLADLMSIRADEKKIELLFHRDANLPEIL 508 >gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] Length = 589 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL +IL + +DG+ IN +G IL TN + + + N Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G + L + + D++E + Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++ESG LH+E V+++E + + I A EK I Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNIT 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + + D ++Q+ N++ NA+ T S G + I+ + + + ++D+G Sbjct: 464 LHQDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDG-LKIDIKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S KGT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|158523274|ref|YP_001531144.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] gi|158512100|gb|ABW69067.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3] Length = 1134 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 106/761 (13%), Positives = 225/761 (29%), Gaps = 64/761 (8%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQ 140 + D +G + G +++G R ++ + +LLK Sbjct: 267 PAPVFFK-DRNGLYLGCNPAFEAITGKTEAEILGKRPHEIWPENYSSTYRDKDLELLKTG 325 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + +GT V +A G G++ + Sbjct: 326 GKQQYEYQYAGPDGTARDVVFYKSA--FQDSAGRVDGL--VGVMLDISERKQAEEALRES 381 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +KK+ L + + T + Sbjct: 382 EKKYRVLIDGLPDIVMRFDRDGRHLFVSDNISDLIDLPAARFIGRTHRELDFPEPACRFW 441 Query: 259 YPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + ++ + F + + + RN + Sbjct: 442 EKAIQGVFDSKTPFETEFRFQGKQGEVVFNWRLIPEQDAHGEIRSVLSFCRNVTAHRKIE 501 Query: 316 DEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + L E +D + + NP+F +T + + + G + L Sbjct: 502 QDYHTLFREMLDGFALHEIIRDAAGRAIDYRFLAVNPAFERMTGLAAREIV----GKTVL 557 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P + + + ++ F P Sbjct: 558 EVLPDTEPYWIERYAGVA-ETGDPVFFEEHARALEK---YFAVTAFRPAPN--------Q 605 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I + + + + + + S+L+ G ++ G + N ++ K+ GYP Sbjct: 606 FASIFQDITERKQAEEALRKNEERYRSVLDNIETGYYEVDLAGNLTFFNPSLCKILGYPS 665 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKL 548 ++ + + ++ T + + ++ E + E+ ++ I + + Sbjct: 666 DEAMGMNYKKYMAPETAKKVFQIFNHVFRTGETDKSFEWTLIKKNGEKCHVATSISLMRD 725 Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAII 604 + + DI+E KQ + + + V+H+ L I+ Sbjct: 726 TDGNPIGFRGIERDITEHKQAEAEKEKLSAQLIQARKMEAVGRLAGGVAHDFNNMLNVIV 785 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G +E+ ++ + E N I + +I LL ++ K +H + L Sbjct: 786 GHAELALDE---TRPDDPVCETLNEILGAARRSAEITRQLLAFAR----KQTIHPRVLDL 838 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + + + ++Q + + + + ++ + D + Q+ N+L NA G+ Sbjct: 839 NATMGDRLKVLQ-RLLGEDVDMAWTPGPDLWPVRMDPSQIDQVMANLLDNARDAIDGVGR 897 Query: 725 IIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + I T E V L VRDTG GM L+ +PF Sbjct: 898 VEIETDNVRLGPWDCVDCPGLVPGEYVRLSVRDTGRGMDRKTLDNLFEPFFTTKG----V 953 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GEGTGLGL ++ N G Y S P +GT + P + Sbjct: 954 GEGTGLGLATVYGIIKQNNGFIYAASRPGQGTAFTVYLPRH 994 Score = 85.5 bits (210), Expect = 4e-14, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 5/220 (2%) Query: 363 AGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L L + + V R +AA+A + SLA++F Sbjct: 169 VSALVPLFEPQTGRVAAVLGMDVDARRWQGAVLAAAAWPSVLTAALIASLALSFALAVAR 228 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + + + + E E L ++L A + +R G+ L N A Sbjct: 229 RRTLNFQTEIARARKQAEQ--AAAETERERRLLQTLLHAIPAPVFFKDRNGLYLGCNPAF 286 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G +IL K +N S E+L +Q E G + + Sbjct: 287 EAITGKTEAEILGKRPHEIWPENYSSTYRDKDLELLKTGGKQQYEYQYAGPDGTARDVVF 346 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + M DISE KQ + L ++K Sbjct: 347 YKSAFQDSAGRVDGLVGVMLDISERKQAEEALRESEKKYR 386 >gi|311235101|gb|ADP87955.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 953 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 116/771 (15%), Positives = 237/771 (30%), Gaps = 63/771 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + +D+ G + +++ + A ++G L V +H + Sbjct: 38 FTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHA---PLVARAAADILAGTCD 94 Query: 147 TTLWPIEGTNL---------YVPIDLAALPI----------YSRNREFSGFRGFGIV--- 184 L P+ G +D P+ + F + Sbjct: 95 DLLLPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYAELFHLCPVP 154 Query: 185 ---HVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + E + + I L + Sbjct: 155 LWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANETASGLFAGCRE 214 Query: 241 SSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 L + + + E +L S L + ++ + + + Sbjct: 215 DLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIEARLMPGFGLT 274 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTK 353 ++ + V+ +++ +AN + Sbjct: 275 GMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIFANRAIRENLL 334 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410 + + + G + + L + + + + Sbjct: 335 HSDDE--RVLGRTDLHFAERQRHLGHEHTFGELCIDSDRVVLQTRTSGRFREDGKVQGRY 392 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 L + ++ + + G + + + + L +EA++D I + Sbjct: 393 LMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEASTDTIWQYDV 452 Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 L N L + + ++ H L + Sbjct: 453 VHDRFL-CNNRCPGLLALSDAEDEC-HCRHRADPADAELLLHNLRN--GQGGDKGFSMEL 508 Query: 530 LGSTKEEKLLSLRII--IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH 584 E + + + +L + DI+E K+ + +L A+ AE + Sbjct: 509 RLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITERKRFETELRQARDDAEAANKA 568 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL ++G +++++ E + +S +L ++ND+ Sbjct: 569 KSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS----DQQELLHVASQSSRNLLTVINDI 624 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD +++ S + +P A+ + A +K I I T + N+P +L D+ Sbjct: 625 LDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPLLIGDVTR 684 Query: 704 VKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI--LRVRDTGVGMTNYELEKAM 757 +QI N++ NA+ FT G + IS H+ + L V D+G+G+ L Sbjct: 685 FRQILFNLVGNAVKFTQQG-TVRISLHGLERHSPAGALRMLLMVEDSGIGIPQDMLGNVF 743 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF Q+ S + R GTGLGL + +++V G I S GT I Sbjct: 744 EPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 794 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 39/372 (10%), Positives = 93/372 (25%), Gaps = 31/372 (8%) Query: 86 TWNIDAHGYLKEISEELPK-TIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGD 135 W D + + + + + +++G + + Sbjct: 313 LWAKDTECRYIFANRAIRENLLHSDDERVLGRTDLHFAERQRHLGHEHTFGELCIDSDRV 372 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 +L+ + + + ++G L + + + P+Y R + G G G + Sbjct: 373 VLQTRTSGRFREDG-KVQGRYLMLDVQKS--PLYDRQGKLLGTVGTG--RDITLLKAQED 427 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDD 252 R + E +D F + P L + D Sbjct: 428 ALLRSQQLLKWTVEASTDTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADA 487 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSL 311 L + + + ++ + + + Sbjct: 488 ELLLHNLRNGQGGDKGFSMELRLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITE 547 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 F+ + + ++F AN S + T + G+ LL+ Sbjct: 548 RKRFETELRQARDDAEAANKA------KSIFLANMSHEIRTP------LNGVLGMLQLLE 595 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L+ + + +S R + + + + PF+ A Sbjct: 596 DAPLTSDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTL 655 Query: 432 GIEPEDVDTRIN 443 +D D RI Sbjct: 656 ATGAKDKDIRIE 667 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 16/154 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L A ++ +G+++ N L P D+L KP +V + ++ +I Sbjct: 29 VLSAIRIPAFTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHAPLVARAAADI 88 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLSH- 573 L+ L S + L +R + + + ++ L + Sbjct: 89 LAGTCDDLL---LPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYA 145 Query: 574 ----------AKKIAEKESSHKSDFLARVSHEIR 597 ++ + H++R Sbjct: 146 ELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLR 179 >gi|46581448|ref|YP_012256.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450870|gb|AAS97516.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 955 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 116/771 (15%), Positives = 237/771 (30%), Gaps = 63/771 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + +D+ G + +++ + A ++G L V +H + Sbjct: 40 FTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHA---PLVARAAADILAGTCD 96 Query: 147 TTLWPIEGTNL---------YVPIDLAALPI----------YSRNREFSGFRGFGIV--- 184 L P+ G +D P+ + F + Sbjct: 97 DLLLPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYAELFHLCPVP 156 Query: 185 ---HVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + E + + I L + Sbjct: 157 LWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANETASGLFAGCRE 216 Query: 241 SSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 L + + + E +L S L + ++ + + + Sbjct: 217 DLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIEARLMPGFGLT 276 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTK 353 ++ + V+ +++ +AN + Sbjct: 277 GMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIFANRAIRENLL 336 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410 + + + G + + L + + + + Sbjct: 337 HSDDE--RVLGRTDLHFAERQRHLGHEHTFGELCIDSDRVVLQTRTSGRFREDGKVQGRY 394 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 L + ++ + + G + + + + L +EA++D I + Sbjct: 395 LMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEASTDTIWQYDV 454 Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 L N L + + ++ H L + Sbjct: 455 VHDRFL-CNNRCPGLLALSDAEDEC-HCRHRADPADAELLLHNLRN--GQGGDKGFSMEL 510 Query: 530 LGSTKEEKLLSLRII--IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH 584 E + + + +L + DI+E K+ + +L A+ AE + Sbjct: 511 RLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITERKRFETELRQARDDAEAANKA 570 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL ++G +++++ E + +S +L ++ND+ Sbjct: 571 KSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS----DQQELLHVASQSSRNLLTVINDI 626 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD +++ S + +P A+ + A +K I I T + N+P +L D+ Sbjct: 627 LDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPLLIGDVTR 686 Query: 704 VKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI--LRVRDTGVGMTNYELEKAM 757 +QI N++ NA+ FT G + IS H+ + L V D+G+G+ L Sbjct: 687 FRQILFNLVGNAVKFTQQG-TVRISLHGLERHSPAGALRMLLMVEDSGIGIPQDMLGNVF 745 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF Q+ S + R GTGLGL + +++V G I S GT I Sbjct: 746 EPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 796 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 39/372 (10%), Positives = 93/372 (25%), Gaps = 31/372 (8%) Query: 86 TWNIDAHGYLKEISEELPK-TIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGD 135 W D + + + + + +++G + + Sbjct: 315 LWAKDTECRYIFANRAIRENLLHSDDERVLGRTDLHFAERQRHLGHEHTFGELCIDSDRV 374 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 +L+ + + + ++G L + + + P+Y R + G G G + Sbjct: 375 VLQTRTSGRFREDG-KVQGRYLMLDVQKS--PLYDRQGKLLGTVGTG--RDITLLKAQED 429 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDD 252 R + E +D F + P L + D Sbjct: 430 ALLRSQQLLKWTVEASTDTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADA 489 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSL 311 L + + + ++ + + + Sbjct: 490 ELLLHNLRNGQGGDKGFSMELRLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITE 549 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 F+ + + ++F AN S + T + G+ LL+ Sbjct: 550 RKRFETELRQARDDAEAANKA------KSIFLANMSHEIRTP------LNGVLGMLQLLE 597 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L+ + + +S R + + + + PF+ A Sbjct: 598 DAPLTSDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTL 657 Query: 432 GIEPEDVDTRIN 443 +D D RI Sbjct: 658 ATGAKDKDIRIE 669 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 16/154 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L A ++ +G+++ N L P D+L KP +V + ++ +I Sbjct: 31 VLSAIRIPAFTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHAPLVARAAADI 90 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLSH- 573 L+ L S + L +R + + + ++ L + Sbjct: 91 LAGTCDDLL---LPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYA 147 Query: 574 ----------AKKIAEKESSHKSDFLARVSHEIR 597 ++ + H++R Sbjct: 148 ELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLR 181 >gi|126727740|ref|ZP_01743571.1| sensory box sensor histidine kinase [Rhodobacterales bacterium HTCC2150] gi|126702996|gb|EBA02098.1| sensory box sensor histidine kinase [Rhodobacterales bacterium HTCC2150] Length = 1521 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 109/755 (14%), Positives = 246/755 (32%), Gaps = 51/755 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIG-DLLKRQNTW 143 + IDA G + E ++ + G ++IG L + + P + L + T Sbjct: 784 IFGIDAEGRVNEWNQTAERITGFTKDEVIGENLVAEYITDDYKKPVKEVLDKALAGEQTA 843 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L+ G V + L + + + +G G G N R R+ Sbjct: 844 NYEFPLFTNSGD--RVDVLLNSTTRRDSDGKITGVVGVG--QDITELNKVRVEQDRIAND 899 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKY 259 + L + + + + K++V L Y D ++ Sbjct: 900 LTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIGKNLVAEYITDDYKKPVKEV 959 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----Y 314 E N T + +S + Sbjct: 960 LDKALAGEQTANYEFPLFTNSGDRVDVLLNSTTRRDSDGKITGVVGVGQDITELNKVRVE 1019 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 D N + +D P F + + G + N + +T + + I + D Sbjct: 1020 QDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIGENLVAEYITDDY 1079 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 K + + L T +R + + + + + G+ Sbjct: 1080 KKPVKEV---LDKALAGEQTANYEFPLFTNSGDR---VDVLLNFTTRRDSDGKITGVVGV 1133 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + L +++ + I I+ EG + N+ ++ G+ ++++ Sbjct: 1134 GQDITELNKVRVEQDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVI 1193 Query: 494 RKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K ++ + + L + L+ + E ++ + + L ++ Sbjct: 1194 GKNLVAEYITDDFKESVKEVLDKALAGEQTANYEFPLFTNSGDRVDVLLNFTTRRDSDGK 1253 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DI+E K+ + ++ H+ K+A + V+HE+ PL I + Sbjct: 1254 ITGVVGVGQDITELKKSQAQVIHSSKLAT-----LGEMATSVAHELNQPLNVIRLAAGNC 1308 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + + +E + I+ I++ + + K + +++ E + Sbjct: 1309 RLRIDP--DSTYLVEKLSRIEEQTARAALIIDHMKMFGR----KTDEKPSNINVHEVIQS 1362 Query: 671 AISLVQLYANEKRILIR-----TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ- 724 LV I +R +S + ++ ++Q+ +N+++NA + G+ Sbjct: 1363 TFDLVGEQIRLAGINLREKKRCSSSKEHEIFVIGHEIQLEQVFINLITNARDALQTRGRS 1422 Query: 725 ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I I S E + +++ DTG G+ +++ PF +GTGLGL ++ Sbjct: 1423 LKEITIEI-VESLESIQIKIFDTGGGIPEKVIDQIFHPFFTTK----EVSKGTGLGLSIS 1477 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++ G + +G II P P Sbjct: 1478 YGIITDMGGSLECCNWE-EGACFSIILPKAKIDEP 1511 Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats. Identities = 59/510 (11%), Positives = 149/510 (29%), Gaps = 25/510 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL--CDVSDILHIDPNNHIGDLLKRQNTW 143 + IDA G + E ++ + G +++G L ++D + + L + T Sbjct: 530 IFGIDAEGRVNEWNQMAEQITGFAKDEVMGQDLVGNHITDDYKKSVQDVLDKALNGEQTA 589 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L+ G + + L + + + G G G N R +++ + Sbjct: 590 NFEFPLFSKTGE--RIDVLLNSTTRRDSDGKIIGVVGVG--QDITELNKVRVEQEQVAIE 645 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKY 259 + L K + + KN+V + Y D + Sbjct: 646 LAQLLNTANVPMFGIDAKGCVNEWNDATAEITSLTKNEVLNKNFVGNYITDDYKKSVQDV 705 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----Y 314 E + T + +S + Sbjct: 706 FDKALNGEQTANFEFPLFSKTGERIDVLLNSTTRRDSDGKIIGVVGVGQDITELNKVRVE 765 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 D N + +D P F + + G + N + +T + + I + D Sbjct: 766 QDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIGENLVAEYITDDY 825 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 K + + L T +R + + + + + G+ Sbjct: 826 KKPVKEV---LDKALAGEQTANYEFPLFTNSGDR---VDVLLNSTTRRDSDGKITGVVGV 879 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + L +++ + I I+ EG + N+ ++ G+ ++++ Sbjct: 880 GQDITELNKVRVEQDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVI 939 Query: 494 RKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K ++ + + L + L+ + E ++ + + L ++ Sbjct: 940 GKNLVAEYITDDYKKPVKEVLDKALAGEQTANYEFPLFTNSGDRVDVLLNSTTRRDSDGK 999 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 DI+E + + + + Sbjct: 1000 ITGVVGVGQDITELNKVRVEQDRIANDLTQ 1029 Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats. Identities = 34/389 (8%), Positives = 116/389 (29%), Gaps = 19/389 (4%) Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L ++ + + + K++V H D K +L Sbjct: 520 QQLIDLANAPIFGIDAEGRVNEWNQMAEQITGFAKDEVMGQDLVGNHITDDYKKSVQDVL 579 Query: 263 T---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYF 315 + E + + + + T +++ + + + Sbjct: 580 DKALNGEQTANFEFPLFSKTGERIDVLLNSTTRRDSDGKIIGVVGVGQDITELNKVRVEQ 639 Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 ++ + ++ +P F + + G + N + +T + + + + D K Sbjct: 640 EQVAIELAQLLNTANVPMFGIDAKGCVNEWNDATAEITSLTKNEVLNKNFVGNYITDDYK 699 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 S + ++ A+ E + + + + + G+ Sbjct: 700 KSVQDVFD-----KALNGEQTANFEFPLFSKTGERI-DVLLNSTTRRDSDGKIIGVVGVG 753 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + + L +++ + I I+ EG + N+ ++ G+ ++++ Sbjct: 754 QDITELNKVRVEQDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIG 813 Query: 495 KPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 + ++ + + L + L+ + E ++ + + L ++ Sbjct: 814 ENLVAEYITDDYKKPVKEVLDKALAGEQTANYEFPLFTNSGDRVDVLLNSTTRRDSDGKI 873 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 DI+E + + + + Sbjct: 874 TGVVGVGQDITELNKVRVEQDRIANDLTQ 902 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 66/224 (29%), Gaps = 11/224 (4%) Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 LL LS I + + + + I+ + Sbjct: 431 QDIAKDILLIITFLSATMIISIWLRRWIAKLTFHLAMEIQRIEKQHGS------RSEYMR 484 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEATSDGIAIINREGIILSTNR 479 + + + + R+ R E+E +++ + I I+ EG + N+ Sbjct: 485 SSLVYELRWISVWLAKLHQRVKYRTAELEKSLYDHQQLIDLANAPIFGIDAEGRVNEWNQ 544 Query: 480 AVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++ G+ ++++ + + + + L + L+ + E T E Sbjct: 545 MAEQITGFAKDEVMGQDLVGNHITDDYKKSVQDVLDKALNGEQTANFEFPLFSKTGERID 604 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + L ++ DI+E + + + + Sbjct: 605 VLLNSTTRRDSDGKIIGVVGVGQDITELNKVRVEQEQVAIELAQ 648 >gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016] gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 1072 Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats. Identities = 104/378 (27%), Positives = 181/378 (47%), Gaps = 15/378 (3%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ +I++ +AI+N I N ++GY E+ + Sbjct: 149 EIELRTADLKASEELSRTIIDGAPSSVAIVNESLFISLWNSTAQNVYGYSSEEATGENIL 208 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553 L + P ++H L+ L+L + +E +TKE ++ + + I +L + Sbjct: 209 TLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACH 268 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 +L + D++ K + +L+ AK AE+ KS FLA +SHEIRTP+ AIIG S + Sbjct: 269 AALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 328 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P + +Y + I S L+L I+ND+LD SKIE+GK+++ LD+ Sbjct: 329 DLTP----KQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSM 384 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731 + A EK + + PR +L D + QI +N+++N++ FT G +I +S H Sbjct: 385 VTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKG-EITVSVHHI 443 Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E+ R+ DTG+GMT+ +++ F Q S + GTGLGL + + +V+ Sbjct: 444 RNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELM 503 Query: 789 MGKFYIFSTPAKGTLIEI 806 G+ + S KG+ Sbjct: 504 GGQIRVESEAGKGSHFIF 521 >gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 2783 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 106/617 (17%), Positives = 214/617 (34%), Gaps = 42/617 (6%) Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 + + +S A D + L E E + + Sbjct: 2172 PAAYDEEALAVVFTIASQASQAIQNARLFDQISNLAADLDARVRERTAELEQATQLLSEE 2231 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH---- 338 + + + + + + + Sbjct: 2232 KERLEAVNRIALELTTQLDLDLIIQRALALISDSLQVDRGSLMLRDVESGALICRAVLHG 2291 Query: 339 -GNLFYANP--SFLLLTKYKSVDDI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 G + AN F T+ + + E D + ++ V Sbjct: 2292 RGQVQAANVPLRFANNTEGLAGWIMQHQEPVNIRDVTHDPRWVQESGRADTVRSVAGVPL 2351 Query: 393 CIAASARL-------HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 +A ++ + I A + + + Sbjct: 2352 QTGDTAIGVIILSSPQPNYFSDSQMNLLGTIASVIAAAVYNAQLYGFVNDLALRNAVLLE 2411 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---- 501 + E + +I + ++G+ +++ I N A ++ + +L +P Sbjct: 2412 EQRAESSKSAAIFRSMTEGVIVLDTTNQITLFNPAAEQMLDIAADLVLGQPLAHLAEVGN 2471 Query: 502 ----EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556 + ++ L + + Q + ++ T +++++ I + + Sbjct: 2472 DDISRRRGQTIYQGILHGLRRMRETQGIFSTSIDLTDPTQVIAVNIAPVRGLDTDYGTVA 2531 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ + K F++ VSHE+RTPLTAI G+ +V+ Sbjct: 2532 VLRDITR--------------EIEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASL 2577 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L P + Y N I + N + ++ D+L+ S+ +S K L F V + + E + ++ Sbjct: 2578 NLT-PDQLSYLNIIKNNTNRLRALIEDILEFSRPDSKK-KLTFTQVDIPTVIEEVVQSLR 2635 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 L K + +R + ++P ++AD + V QI N+ SNA+ +T GG I + Sbjct: 2636 LEYERKGMKVRIDTSPSLPPVIADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANM 2695 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V DTGVGM+ +L+K +PF + N + GTGLGL +AK +V+ + G+ ++ S Sbjct: 2696 MQIEVEDTGVGMSPEQLKKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTS 2755 Query: 797 TPAKGTLIEIIFPLYDT 813 KG+ PL T Sbjct: 2756 ELGKGSTFSFAIPLQQT 2772 >gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 15/382 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L + E D I I++++ + N++ S L G +EDI K Sbjct: 264 KRELIRSEKEKTKLALVAEHAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ + T + SL ++ + K+ L + + + + + Y + Sbjct: 324 LQ-LDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K+ +NKL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 383 VERDITKKKELENKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + + Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYL 498 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731 +K + N I + D ++QI N++SNA+ FT G I + + T Sbjct: 499 SICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHKGS-ITLNFSHTLTA 557 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + ++V+DTG+G+ L+ +PF Q S + GTGLGL + K + D G Sbjct: 558 KGEQAIQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGY 617 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 + S+ KGT ++ PL T Sbjct: 618 ISVNSSEGKGTCFTLVLPLEIT 639 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143 + +D L I++ GN + G L V + I N L LK + Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKAGTSV 347 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +GT ID++ PI+ N + + + + K Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELENKLIKAADK 403 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425 >gi|134291091|ref|YP_001114860.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134134280|gb|ABO58605.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 989 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 106/651 (16%), Positives = 235/651 (36%), Gaps = 43/651 (6%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G R A+ ++ + V + R ++V Sbjct: 128 GAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLSEVF 187 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 SL + H + L T + LP + + + + + Sbjct: 188 SLHDENTHAP-IEDPMAAVLQTGSDGGLPARTILRARGGSDLPVECTGTPMTDERGVRQG 246 Query: 302 YLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFV-------YSHGNLFYANPSF 348 + + E E + + + + G Y+N Sbjct: 247 IVIVFRDVTQKRRAQEAEILRETNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSN--I 304 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + ++L + L D RL + Sbjct: 305 YEWLGFDTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDG-LFELENRL---RHRDG 360 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + + + + G + + ++ ++ + + E + G+A Sbjct: 361 SDRWVLVRGTARRDATGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHC 420 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + +G L N+ ++ G+P + + ++ + + + L+ E Sbjct: 421 DLDGRFLRVNQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLTEGRLKHYSE-E 479 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + + + + +S + + DISE K + + AK AE S Sbjct: 480 VPLVRFDGERVWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVRVAKDAAEAASRA 539 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA +SHE+RTPL I+G++++++ + R + I++SG +L ++ND+ Sbjct: 540 KDQFLANISHELRTPLNGILGYAQILQRDAR---LDTRQLASVGVIEQSGQHLLTLINDI 596 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD +++ +GK+ L VSL + +V + A +KR+++ A ++P + D R Sbjct: 597 LDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERR 656 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++Q+ LN+L+NA+ FT G ++ +S + + + VRDTG+G++ LE +PF Q Sbjct: 657 LRQVLLNLLANAVQFTDHG-EVTLSVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQA 715 Query: 764 PNSQ------QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + +++ +V G+ + S+ +G++ Sbjct: 716 GDHTRRGGGAGLGLA-------ISRQLVRMMGGEIEVTSSAGEGSVFGFEL 759 Score = 90.5 bits (223), Expect = 1e-15, Method: Composition-based stats. Identities = 37/390 (9%), Positives = 107/390 (27%), Gaps = 32/390 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQ- 140 + D G++ ++ G + G RL +V + + + + +L+ Sbjct: 151 VLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLSEVFSLHDENTHAPIEDPMAAVLQTGS 210 Query: 141 -NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGK 198 +T L G++ +P++ P+ G F V R + L + Sbjct: 211 DGGLPARTILRARGGSD--LPVECTGTPMTDERGVRQGIVIVFRDVTQKRRAQEAEILRE 268 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYY 247 + ++ G ++ + D + P R+ + + Sbjct: 269 TNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSNIYEWLGFDTPQARLDYEAYMSVLHP 328 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 H+D L S + + + + ++ + + ++ Sbjct: 329 DHRDST-DRAVASFLESGDGLFELENRLRHRDGSDRWVLVRGTARRDATGKPVRFVGSLV 387 Query: 308 HPSL----SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 + E T + + G N + + D ++ Sbjct: 388 DITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRFLRVNQRSGEIVGWPR-DALQQ 446 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L + + A ++ S + ++++ E + +T + + Sbjct: 447 R----RLHELIHADFSVASTERFRLLTEGRLKHYSEEVPLVRFDGER-VWVTLSVALQHD 501 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + I + + + + + + Sbjct: 502 ASGQTAHVIVIIQDISERKALEETVRVAKD 531 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 30/273 (10%), Positives = 77/273 (28%), Gaps = 22/273 (8%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDR 391 + + A +++ V G L L +D+ +M R + Sbjct: 6 ILIVEDDRIV-ARDIAQQMSRAGYVVVGSTGSGEDALALVETLAADSKPDLVLMDVRLEG 64 Query: 392 TCIAASARLHTIQWNRENSLAMTFIP---FEKANQFPENMPQNGIEPEDVDTRI------ 442 + + +T + E +D+ R Sbjct: 65 ELDGIDTARRIREARDIPVVFLTAYADEETIRRATAAEPYGYVLKPFDDMQLRTVVEMAL 124 Query: 443 ----NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 +R++ + L + DG+ + +G + N A L G+ + + + Sbjct: 125 YKHGAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLS 184 Query: 499 VFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554 ++NT + + + +L L T+ + L + + Sbjct: 185 EVFSLHDENTHAPIEDPMAAVLQTGSDGGLPARTILRARGGSDLPVECTGTPMTDERGVR 244 Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + D+++ ++ + + A E + Sbjct: 245 QGIVIVFRDVTQKRRAQEAEILRETNARLEMAM 277 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 33/373 (8%), Positives = 90/373 (24%), Gaps = 18/373 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147 D G +++ + +G + RL ++ + LL + + Sbjct: 421 DLDGRFLRVNQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLTEGRLKHYSEEV 480 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L +G V + L+ + + + + I+ + Sbjct: 481 PLVRFDGE--RVWVTLSVALQHDASGQTAHV--IVIIQDISERKALEETVRVAKDAAEAA 536 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263 K + + + ++ + + L V++ LLT Sbjct: 537 SRAKDQFLANISHELRT-PLNGILGYAQILQRDARLDTRQLASVGVIEQSGQHLLTLIND 595 Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGEN 320 + + ++ + + + L++ P L A E Sbjct: 596 ILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDER 655 Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + ++ HG + + + + G+S Sbjct: 656 RLRQVLLNLLANAVQFTDHGEVTLSVSRGAA--GRLRFEVRDTGIGVSADRLEAIFQPFE 713 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A +R ++ + F + P + P + Sbjct: 714 QAGDHTRRGGGAGLGLAISR-QLVRMMGGEIEVTSSAGEGSVFGFELDAPASAAGPCERI 772 Query: 440 TRINKRKMEIEVM 452 R+ +++ Sbjct: 773 PRLQADRLDGARR 785 >gi|221197648|ref|ZP_03570695.1| PAS domain protein [Burkholderia multivorans CGD2M] gi|221204320|ref|ZP_03577338.1| PAS domain protein [Burkholderia multivorans CGD2] gi|221176486|gb|EEE08915.1| PAS domain protein [Burkholderia multivorans CGD2] gi|221184202|gb|EEE16602.1| PAS domain protein [Burkholderia multivorans CGD2M] Length = 1380 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 133/793 (16%), Positives = 283/793 (35%), Gaps = 71/793 (8%) Query: 36 TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV-FDPIPRTVRFTWN------ 88 T ++K C + + + + T + F R Sbjct: 501 THRAKAATACPPLLHVESGSADERPVPTPTLRAPASPVQRNFSYAELHQRALEMYSPPSV 560 Query: 89 -IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID + +S+ + + + ++ + V L +D I L+ + + Sbjct: 561 IIDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARR 620 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W + I++ P + + + L D+ + Sbjct: 621 VKWTHD--TQVSWINMTVRPFHDK------------------VANADFLLVVFDEVDGRM 660 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + +S + P ++++++ E A + +T L S E Sbjct: 661 TDEDQAEASGQD-----------PVLAQLEHELQHSREQLATIIEQYETSVEELKASNEE 709 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E+ + + + K+ ++ + + R + A D + + Sbjct: 710 LQAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI- 768 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 FV + P+ + D ++ L P L+D+ L Sbjct: 769 ---ATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLR 825 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 +R I+ + +P+ A+ + D + Sbjct: 826 LIERE----------IESEAGRWYLIRLLPYRTAD--DHIDGAVITLIDVTDRHHAEEAA 873 Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 +L + ++T D I I + GII S N ++FGY ++++ + + E N Sbjct: 874 RAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDR 933 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEW 564 ++ + + TK+ + + ++ + + + ++ + D+++ Sbjct: 934 HARVPAHEREVATREGRA-DDERWHRTKDGRRIFCSGVVTPISDTSFNGFAKIVRDLTQR 992 Query: 565 KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 K ++ A ++ A + K +F+A +SHE+R PL I +E + + Sbjct: 993 KLSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAE-MLPRLPET 1051 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P E A I ++ I++DLLD+S+I +GK+ L V L + + + Sbjct: 1052 RDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEA 1111 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+ + ++++T F + LAD +QI N++SNA+ FT +GG+I++ TH + + Sbjct: 1112 DAHARGLVLQTEFPDEPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEAR-ML 1170 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796 + V D G G+ L F Q P + G G+GL L + +V+ + G+ S Sbjct: 1171 RVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHDGRISAASD 1228 Query: 797 TPAKGTLIEIIFP 809 P +GT + + P Sbjct: 1229 GPGRGTTMTVWLP 1241 >gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 765 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 124/594 (20%), Positives = 230/594 (38%), Gaps = 34/594 (5%) Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 RM+ V S+ D++ + E++ + E + T ++ Sbjct: 36 EHQAVQRMRTMVHSVNYAVESMDELSQLERFVMAVGGEDDIEVLAIIGGEPARVVTSSRF 95 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + S + E + + + + + P ++ G S Sbjct: 96 GWNGRQISDMASEIPLDAIAEAQRSGGERLLEEGEDHLRLLS-PLYLNKTGRARAMWHSG 154 Query: 349 LLL----TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 L++ + A S L L + R A SA + + Sbjct: 155 LIMAVIDFGTVRHEAERDAVQASLLALGLILVLATGAVVTLRRVVLRPLRAVSAAMGR-R 213 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + ++ E + + + QL ++++ S Sbjct: 214 TAGQR---QAYAKVYADDELGELARTLNHMVDVLSDK---------EAQLRTLIDNVSGA 261 Query: 465 IAIINREG--IILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDL 521 + + +G + + + +L GYP + F + + V+ + E Sbjct: 262 VYQLKWQGNWRLAFMSEHLEELAGYPSSYLDGNFRFVNLIHPDDVGVLRALMQETTKARG 321 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKI 577 + + + + ++ + S + D++E Q+ L AK+ Sbjct: 322 -SGYQLEYRIIHADGEERWVLDRVRLVYDDSGRPLHADGILVDVTERHQQSELLREAKEA 380 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KSDFLA +SHEIRTPL +IG + ++ + + EYA ID SGNL+ Sbjct: 381 AEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL----SDEQREYAETIDVSGNLL 436 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD SKIE+G+M L L + E +++V A EK + + +PR Sbjct: 437 LALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAREKNLSLDWQAEAAVPRR 496 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTGVGMTNYEL 753 ++ D + ++Q+ LN++ NAI FT G +I + + ++L V DTG+G++ E+ Sbjct: 497 VIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDALLLEVAVADTGIGISPGEM 556 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +PF Q S + GTGLGL + K +VD G + S P +G+ Sbjct: 557 MRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKSQPGRGSTFSFT 610 >gi|81300166|ref|YP_400374.1| multi-sensor signal transduction histidine kinase [Synechococcus elongatus PCC 7942] gi|81169047|gb|ABB57387.1| multi-sensor signal transduction histidine kinase [Synechococcus elongatus PCC 7942] Length = 1807 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 101/731 (13%), Positives = 228/731 (31%), Gaps = 51/731 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G L + + + ++ L + L + Sbjct: 1117 VDERGKLAFANPTAQEWLAIDKSELSQQSLDQLL-PLDLTA------------------- 1156 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKF 204 W G + L + R G ++H + D+ F Sbjct: 1157 -WNQGGVGNQGELKLKGRILQYEARPLVGPVAERGWVLVLHDVTAQRQVDQAMRERDQFF 1215 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 S E+ + + + V D + Sbjct: 1216 SLSLEMFC-MVDLRGRFIQVNPAFAATLRYSTAELVGRPYLELVDLGDRSQIATTIRRLK 1274 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + Q L ++ ++ + L Sbjct: 1275 AGLLIHDLVIRVWDKAGELHWLQISAALGDDRVIYCVARDVTEQRAIQEQILQQNLLLRM 1334 Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + V +P L + D L P K Sbjct: 1335 AGQTAKLGGWSVELPSREVIWSPETFSLLGFTDED---EPDLEEALSLYPPAERALVTKA 1391 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + +H L ++ + +G + D + Sbjct: 1392 LEDCIQQGISFDFDVAVHNTS---GFLLDARVTGQAVRDETGAIVRISGAFQDVSDRKRA 1448 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ + +L + LE+ +DG ++ N+ ++ G VE+ L + Sbjct: 1449 QREAQRLADRLRTTLESITDGFYTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPG 1508 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + S + H + ++ E + + ++ D+SE Sbjct: 1509 SYESELGHIYRQAIATGEAAHFE---TYYEPFGRWFEVHAYPS----EDGLAVYFRDVSE 1561 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +Q + L + E+ + +F SH+++ PL I FS+ + + + Sbjct: 1562 RRQTEQNLRITLRELERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIAR--TSNLDDES 1619 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y + + + ++ DLL+ S++ + + L +P+SLD+ + + + ++ ++ Sbjct: 1620 QDYLRRMASAAGRMQTLIIDLLNYSRVNTRGLPL--QPLSLDQVLDDVLVDMEASLDQAS 1677 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRV 741 ++ +P I D +Q+ N+LSNA+ F + I I + T ++ L + Sbjct: 1678 AIVERQ---PLPTIQGDAGQFRQVFQNLLSNALKFQSADNQPLIQIYSELTEAGQLRLCI 1734 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G L++ PF ++ + + GTG+GL + K +++ + S P +G Sbjct: 1735 ADNGIGFDEKYLDRIFNPFQRLHS--RDAYAGTGIGLAIVKKIIERHGATITAKSIPGQG 1792 Query: 802 TLIEIIFPLYD 812 ++ I FP+ + Sbjct: 1793 SVFFITFPVTE 1803 Score = 84.7 bits (208), Expect = 7e-14, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 7/216 (3%) Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + L R+C + H Q ++ F +Q + + + Sbjct: 717 DRDTALIHGLRSCWSFPLIAHNGQVQGTLAVYQPFPQTPSEDQLQQCLTVAQLAAIAFAR 776 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +++++++ + S+ D + + +GI S N A ++ + I+ K F+ Sbjct: 777 SLDRQQLQDSEQRFRSLFTFNPDAVYSFDLQGIYQSMNSAGFEILDRQADQIIGKHFSDV 836 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 + + + + + + + +L L + + ++ Sbjct: 837 VISEDLEKCQQHFDQACKGEAQ---HYEIRINGRNGQLFYLDVSKFPIVVNNKIVGVFGI 893 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 DI++ KQ L A + K++ L + Sbjct: 894 AKDITQRKQITADLQQALMQSNKQTEQLRR-LGNAA 928 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 15/159 (9%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E T D + +REG L + + KLFGY E+++ +P+ + + Sbjct: 503 QRIMEFTMDVLCSFDREGRFLEVSPSCLKLFGYSPEELIGRPYLELVLPEDRDLTIQEAQ 562 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 ++++ T K+ ++ + HDI+ Q + + Sbjct: 563 QLMTGRP--TYNFRNRYRHKDGHVIHILWSADWSETDQVLFAVAHDITPLVQNEAFANRQ 620 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + I S + PLT I+ + + Sbjct: 621 RDILSLISLDR-------------PLTEILTAICAMVEE 646 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 55/545 (10%), Positives = 133/545 (24%), Gaps = 98/545 (17%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107 F + + F F+P ++ D G + ++ + + Sbjct: 768 QLAAIAFARSLDRQQLQDSEQRFRSLFTFNPDA-----VYSFDLQGIYQSMNSAGFEILD 822 Query: 108 NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGT-NLYVPIDLAA 165 A ++IG DV ++ H K + I G +D++ Sbjct: 823 RQADQIIGKHFSDVVISEDLEKCQQHFDQACKGEAQH----YEIRINGRNGQLFYLDVSK 878 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 PI N + G FGI + + L + ++ + + Sbjct: 879 FPIV-VNNKIVGV--FGIAKDIT---QRKQITADLQQALMQSNKQTEQLRRLGNAAIATA 932 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 Q ++ L ++ S + + Sbjct: 933 ELQDH-------QELVKYLVEQVRLTIRAHQAVISLTRCDDWSQSINAISLSDKYAAWKN 985 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 T + E + DK P Sbjct: 986 YDELSTGEGIYTLICETNQPLVLTQEELEKHPRWRGFGDQADKHP--------------- 1030 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + G L+ L P + + L + Sbjct: 1031 ---------------PMRGWLAVPLFDPN---GRNLGVLQLSDKEEGEFD---------- 1062 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + ++A F A + +++++ ++ +I + ++G+ Sbjct: 1063 DDDLAIAQQFAQMTVA--------VLENNRLLNEVLTAEQQLKEQLSFNSTITDCMAEGL 1114 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 ++ G + N + ++ ++ L + LT + Sbjct: 1115 LAVDERGKLAFANPTAQEWLAIDKSELSQQSLDQLLPLD--------LTAWNQGGVGNQG 1166 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 E G + + L + + L +HD++ +Q ++ + Sbjct: 1167 ELKLKGRILQYEARPLVGPV----AERGWVLVLHDVTAQRQV-----------DQAMRER 1211 Query: 586 SDFLA 590 F + Sbjct: 1212 DQFFS 1216 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 42/430 (9%), Positives = 94/430 (21%), Gaps = 76/430 (17%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTT 148 D G E+S K G ++IG ++ D L T+ + Sbjct: 517 DREGRFLEVSPSCLKLFGYSPEELIGRPYLELVLPEDRDLTIQEAQQLMTGRPTYNFRNR 576 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---------LGKR 199 +G +++ ++S + + F + H A Sbjct: 577 YRHKDGHVIHI--------LWSADWSETDQVLFAVAHDITPLVQNEAFANRQRDILSLIS 628 Query: 200 LDKKFSHLHEIKKGHS-----------------------------------SVEKEKYDI 224 LD+ + + +++ Sbjct: 629 LDRPLTEILTAICAMVEEFNPSTYCSILRLDRETQQIWTVVAPSLPKEYCQAIDGATVGP 688 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + R + + + E + T L S S P + Sbjct: 689 NTGSCGAAIFRRQPVLVADIESDPLWANDRDTALIHGLRS-CWSFPLIAHNGQVQGTLAV 747 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-----ENLTPETVDKCPIPFFVYSH- 338 + + T + + ++ + + D E P + + Sbjct: 748 YQPFPQTPSEDQLQQCLTVAQLAAIAFARSLDRQQLQDSEQRFRSLFTFNPDAVYSFDLQ 807 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G N + + ++ I D D + Sbjct: 808 GIYQSMNSAGFEILDRQADQIIGK-----HFSDVVISEDLEKCQQHFDQACKGEAQHYEI 862 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EV 451 R I + F + + GI + + ++ + Sbjct: 863 R---INGRNGQLFYLDVSKFPIV-VNNKIVGVFGIAKDITQRKQITADLQQALMQSNKQT 918 Query: 452 MQLCSILEAT 461 QL + A Sbjct: 919 EQLRRLGNAA 928 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 18/246 (7%), Positives = 58/246 (23%), Gaps = 17/246 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG 145 + +D + +++E + +G + +G + + HI + + Sbjct: 1471 YTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGEAAHF 1530 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGK-RLDKK 203 +T P ++ A P G + + L + Sbjct: 1531 ETYYEPFG-----RWFEVHAYPSED---------GLAVYFRDVSERRQTEQNLRITLREL 1576 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E+++ + + + + + E + + Sbjct: 1577 ERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIARTSNLDDESQDYLRRMASAAGRMQTL 1636 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + L + Q + + + S + S Sbjct: 1637 IIDLLNYSRVNTRGLPLQPLSLDQVLDDVLVDMEASLDQASAIVERQPLPTIQGDAGQFR 1696 Query: 324 ETVDKC 329 + Sbjct: 1697 QVFQNL 1702 >gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2] gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2] Length = 594 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 157/364 (43%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL +DG+ NR+G IL TN + ++ + Sbjct: 251 ALSQEKEQLASILSGMADGVITFNRDGTILITNPPAERFLQSWFYELDD---IENNTEEV 307 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 PS + ++ + Q E G + + + + + D++E + Sbjct: 308 PSKVMELFQLAVNTEKEQIGEISIQGR----SWVIIVSPLYNNKYIRGAVAVIRDMTEER 363 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + ++DF+A VSHE+RTP++ + G+SE I + G + E Sbjct: 364 KL--------------DKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAGT--DEEKKE 407 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A+ I + +VN+LLD++++E+G + L E ++ + I Q A EK I Sbjct: 408 MASVIYDESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEIS 467 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + I D ++Q+ N++ NAI TP G++ + + + + VRD+G Sbjct: 468 LEHDLQSKGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKV-LERSDERGLFIEVRDSG 526 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +++A+ G + S GT Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFS 586 Query: 806 IIFP 809 I P Sbjct: 587 IFIP 590 >gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1275 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 120/726 (16%), Positives = 243/726 (33%), Gaps = 61/726 (8%) Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFS 176 + +L D + + R + L GT + I L L ++ R Sbjct: 280 AKLIALLDNDQHPVASMAILRDIAADRVSRTQLLFFVGTGSALFIVLLMLALHRRVGSVE 339 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 ++ N + + + + ++ P + Sbjct: 340 QH----VIQANDALAASNQRFRDFSESSADWLWETDANLRFSYFSENLQRICGIDPQKVL 395 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 S L +L + E+ + + Sbjct: 396 GKARSELWLNDEINKPDALAGHLAVLENREAFRDFEYCLLNDRGEHLWLLASGIPYFDKE 455 Query: 297 KESFEYLSHRN----HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351 Y L ++ L E V+ + F +Y L N ++L + Sbjct: 456 GHFAGYRGIGQNITVRKDLELAAEKSAKLLREAVENVSVGFTIYDEEDRLVICNETYLDI 515 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKL-----SDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 S + + + + + V + A + N Sbjct: 516 YSDSSDLIVPGMHFADIIRKGAERGQYPEAQGDIDGWVCSRVAQHQHPDGLAIEQEL--N 573 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 L + G + + +R++ + L +E +++GI Sbjct: 574 DGRWLLIIENRTPSG-------YIVGNRIDITARKQAERQLLL----LSMAVEQSTEGIL 622 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I + + I N A ++ G+ E+ + + + TP + +LS Q + Sbjct: 623 ITDVDANIEYVNEAFVRISGFSREEAIGQTPRILDSGLTPRETYAEMWAVLSRG--QLWQ 680 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + K ++ + R+ I + Y D++E ++ ++L + E+ + Sbjct: 681 GELINKRKSGEIYTERLTIMPMRQDGRVTHYVAVKEDVTEKRRNADELERHRHHLEELVA 740 Query: 584 HKSD------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ FLA +SHEIRTP+ AI+G + +++ + + + Sbjct: 741 ERTAELAVAHEAAEAASRAKSAFLANMSHEIRTPMNAIVGLTYMLRRT----ITDSGQAD 796 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I S + +L ++ND+LDISKIE+ K+ L +L+E +S S+V EKR+ Sbjct: 797 KLGKIAASADHLLGVINDILDISKIEANKLALDQSEFNLEELLSRVTSMVIDRVREKRLE 856 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741 + ++ ++ D + Q +N L NA+ FT G I++ + V Sbjct: 857 LIIDTDASLGFLMGDATRLGQSLINYLGNAVKFTDYGS-IVLRARLVEESSNDVLIRFEV 915 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L + + F Q ++ R GTGLGL + + + G+ + ST G Sbjct: 916 EDTGIGVAPENLPRLFQVFEQGDSTTTRRYGGTGLGLAITRRLAQLMGGEAGVESTLGVG 975 Query: 802 TLIEII 807 + + Sbjct: 976 STFWLT 981 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 48/408 (11%), Positives = 124/408 (30%), Gaps = 25/408 (6%) Query: 64 NTNYLDSENTFVF-DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122 N + + F D + + W DA+ SE L + G K++G ++ Sbjct: 344 QANDALAASNQRFRDFSESSADWLWETDANLRFSYFSENLQRICGIDPQKVLGKARSELW 403 Query: 123 DILHIDPNNHIG---DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 I+ + + +L+ + + + ++ + + +P + + F+G+R Sbjct: 404 LNDEINKPDALAGHLAVLENREAFRDFEYCLLND-RGEHLWLLASGIPYFDKEGHFAGYR 462 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G G V D ++ K E ++ E+ + + + Sbjct: 463 GIG--QNITVRKDLELAAEKSAKLLREAVENVSVGFTIYDEEDRLVICNETYLDIYSDSS 520 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEES-------SLPEQEDFHTINLNQYTKKQYFGTL 292 + + E+ ++ + + + + + Q + + Sbjct: 521 DLIVPGMHFADIIRKGAERGQYPEAQGDIDGWVCSRVAQHQHPDGLAIEQELNDGRWLLI 580 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351 N S + +R + + L V++ + N+ Y N +F+ + Sbjct: 581 IENRTPSGYIVGNRIDITARKQAERQLLLLSMAVEQSTEGILITDVDANIEYVNEAFVRI 640 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + + I + L+ + S L + + E Sbjct: 641 SGFSREEAIGQTP----RILDSGLTPRETYAEMWAVLSRGQLWQGE--LINKRKSGEIYT 694 Query: 412 -AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 +T +P Q ++ + + R N ++E L ++ Sbjct: 695 ERLTIMPM---RQDGRVTHYVAVKEDVTEKRRNADELERHRHHLEELV 739 >gi|116751159|ref|YP_847846.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116700223|gb|ABK19411.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] Length = 1268 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 109/767 (14%), Positives = 225/767 (29%), Gaps = 68/767 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D ++ L + +G +M+G + + D + Sbjct: 386 IWLTDRQWKTSYVNSRLERMLGYEPGEMLGRHIEEFMDDEGRLLAREKMAGRESGMPGTY 445 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L +G+ L+ + + P+ S + +F G ++ K D +F Sbjct: 446 EFKLVRRDGSELWAMV--STSPVVSASGQFEGA--LAMLTDITQHKQAEEELKERDDRFK 501 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L G K + D P ++ T +D Sbjct: 502 KLSSHVPGMIYQFKRRPDGTY--CVPFTTDAVREIFGCTPEAVREDYSPIAGVISAEDWG 559 Query: 266 ESSLPEQEDFH---------TINLNQYTKKQYFGTLQNNSKESFEYL------SHRNHPS 310 E + + + G + + Sbjct: 560 GVIRSIGESAASMTIWQCTFRVQVPGRPVRWMLGNSTPERLDDGSIVWHGFITDVTERKQ 619 Query: 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI-EIAGGLST 368 E + + F G+L ANP+ ++ ++S + + G L+ Sbjct: 620 AGEALIRSEERYGRLFEDAVLGIFRSTPTGSLVDANPALAVMFGFESPAQMKDSVGNLAG 679 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + D P + + + ++ + S + ++ + Sbjct: 680 VYDDPARRKEIVQRLLETRK------PVRTEGRFLRRDG-TSFIGNIHLWTVRDEHDNIL 732 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 G + + ++ + +E Q IL + +GI ++ EG N A + G+ Sbjct: 733 HIEGFVEDITERKLAEEAIEQLRRQNELILNSVGEGILGLDVEGRHTFVNSAAMGMLGFE 792 Query: 489 VEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 +++ + + + + +L + T K+ +R Sbjct: 793 PAELIGRRGHDMYHHTRESGDRFPEEECPIYQSYRSGRACSLTQATFWR-KDGSSFPVRY 851 Query: 544 IIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRT 598 L + DI+ +Q + + + ++H+ Sbjct: 852 SCAPLIEGGKVLGAVVAFRDITRQRQIEEEKDRLTAQLAQAQKMEAIGTLAGGIAHDFNN 911 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 L I+G++E+ + E + ++ + +L S+ K Sbjct: 912 ILGIIMGYAEIA---NLDLPFDSSAKESIAEVLKATRRARGLTAQILTFSR----KHVQE 964 Query: 659 FEPVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 P+ V EA+ L++ I L D + QI +N+ +NA H Sbjct: 965 KRPLRTVPVVKEALKLLRATLPTTVEIRGEIDLPEGEDLTLGDPTQIHQILMNLSTNAAH 1024 Query: 718 FTPS-GGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 GG + + + + L V+DTG GM L++ P+ Sbjct: 1025 AMREHGGILSVFLTQVAFDPANDAGVMGLSPGRYLRLTVQDTGHGMDRTVLDRIFDPYFT 1084 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S GEGTGLGL + +V G + S P GT+ + P Sbjct: 1085 TKGS----GEGTGLGLAVVHGIVKNCNGAITVHSKPGAGTVFHVHLP 1127 Score = 91.6 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 ++ + I+E T +GI + +R+ N + ++ GY ++L + Sbjct: 360 QRTQAYEALQASEERYRRIIETTEEGIWLTDRQWKTSYVNSRLERMLGYEPGEMLGRHIE 419 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556 F++ + + + T E + E + Sbjct: 420 EFMDDEGRLLAREKMAG-RESGMPGTYEFKLVRRDGSELWAMVSTSPVVSASGQFEGALA 478 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKES 582 + DI++ KQ + +L +K S Sbjct: 479 MLTDITQHKQAEEELKERDDRFKKLS 504 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 50/465 (10%), Positives = 128/465 (27%), Gaps = 33/465 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-------KRQN 141 +D G ++ +G ++IG R D+ + + + Sbjct: 772 LDVEGRHTFVNSAAMGMLGFEPAELIGRRGHDMYHHTRESGDRFPEEECPIYQSYRSGRA 831 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + T W +G++ P+ + P+ G + G V R R + + D Sbjct: 832 CSLTQATFWRKDGSSF--PVRYSCAPL------IEGGKVLGAVVAFRDITRQRQIEEEKD 883 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + L + +K + + + ++++L + E Sbjct: 884 RLTAQLAQAQKMEAIGTLAGGIAHDFNNILGIIMGYAEIANLDLPFDSSAKESIAEVLKA 943 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + F ++ + + ++ K L EGE+L Sbjct: 944 TRRARGLTAQILTFSRKHVQEKRPLRTVPVVKEALKLLRATLPTTVEIRGEIDLPEGEDL 1003 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 T P ++ N + + + + + + Sbjct: 1004 T------LGDPTQIHQILMNLSTNAAHAMREHGGILSVFLTQVAFDPA-NDAGVMGLSPG 1056 Query: 382 KPVMLYRSDRTCIAASARLHTI---------QWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + L D L I K + Sbjct: 1057 RYLRLTVQDTGHGMDRTVLDRIFDPYFTTKGSGEGTGLGLAVVHGIVKNCNGAITVHSKP 1116 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI-LEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + K + E +++ + + S+ + +++ E ++ + + + GY V Sbjct: 1117 GAGTVFHVHLPKLEREASSIEVAPVSIATGSESVIVVDDEEKLVIAIKRMLEYLGYKVTA 1176 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKE 535 + T+ L + P + +T+ + L + +G + Sbjct: 1177 MTSSVATLSLFRQQPEGFDVMITDYTMPGMTGIDLAREIIGIRPD 1221 >gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 709 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 94/538 (17%), Positives = 202/538 (37%), Gaps = 19/538 (3%) Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 L N + ++ ++ + + + + G + + Sbjct: 40 ILAPLYNPEQAIAGVIAVSRDIGERKRTEQALRQSEQ---RLQMAQRAGKIGTWEWNVAT 96 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKL---SDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + + + + G P + N+ + + I Sbjct: 97 GEVFWSEGIWEILGLEIGTEEPGVKPWVDFIHPNDRPRVMEGVEKVLAEGKEYYDEFRIV 156 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + + G+ + + + + + + + + + Sbjct: 157 RRDNTVIWVASKGQIIRDAEGQAECFLGVNIDISERKQAEEVRQESEERFQAFMAHSPAA 216 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-Q 523 I + +G ++ + F +D + K + + + + + + + + Sbjct: 217 AWITDADGKVIYLSPTYVNTFQLFTQDAIGKTAFELFDLEIATQLLNNIQTVAKTNQVLE 276 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KK 576 T+E L + I L S D++ ++ + + ++ Sbjct: 277 TIEMAPRLDGTIGDFLVYKFPIAHLSGQSLVGGVAIDVTSRRRAEEEREELLLREQAARE 336 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 AE + K +FLA +SHE+RTPL I+G+ ++++ + L + I+R+ L Sbjct: 337 AAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQ---LSEEKKAIALETIERNAKL 393 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 ++ DLLD+S+I GK+ L+ V L ++ A V L A K I I T A ++ Sbjct: 394 QTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQL 453 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D ++Q+ N+L+NA+ FTP+GG++ I T N ++V DTG G+T L Sbjct: 454 FMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLEST-NTYTQIQVSDTGKGITPEFLPYV 512 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813 + F Q ++ + G GLGL + + +V+ + G + S +G + + PL T Sbjct: 513 FETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLPLITT 570 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 12/137 (8%), Positives = 33/137 (24%), Gaps = 7/137 (5%) Query: 96 KEISEELPKTIGNY--AFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152 SE + + +G + D + +L +Y + + Sbjct: 99 VFWSEGIWEILGLEIGTEEPGVKPWVDFIHPNDRPRVMEGVEKVLAEGKEYYDEFRIVRR 158 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + T + + I + F G I + + +++F Sbjct: 159 DNT--VIWVASKGQIIRDAEGQAECFLGVNI--DISERKQAEEVRQESEERFQAFMAHSP 214 Query: 213 GHSSVEKEKYDIFSQQS 229 + + + Sbjct: 215 AAAWITDADGKVIYLSP 231 >gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus thermoglucosidasius C56-YS93] gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y4.1MC1] Length = 609 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 165/387 (42%), Gaps = 25/387 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G I+ N A Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 295 ILNVSRETVLSSSIIDVLGIGDQYTFETLLEEQDSLILDFSTDEELYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ F + + +HDI+E ++ + +F+A VSHE+RTPLT + Sbjct: 350 IQKETGFVNGLIVVLHDITEQEKI--------------DRERREFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + I ++ +VNDLL +SK++S L+ V+ Sbjct: 396 KSYLEALAEGAWQ--DKAIAPRFIEVIQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVN 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 E + I + + I I D + Q+ NI+SNAI ++P GG Sbjct: 454 FSEYFHKVIDRFE-LTKSENITFVRKIPKEAIFIEIDEDKITQVLDNIISNAIKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +I +E+I+ V D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 KITFRVR-ELADEIIVSVSDEGVGIPKADLAKVFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V A+ G + S KGT I PL Sbjct: 572 VVIAHGGTIWAESKEHKGTTIFFTLPL 598 >gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.] Length = 701 Score = 341 bits (874), Expect = 4e-91, Method: Composition-based stats. Identities = 103/396 (26%), Positives = 174/396 (43%), Gaps = 36/396 (9%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ + ++ + I + +G I N + FGY +IL + + Sbjct: 303 ELRASERKYRELVMLANSIILRWSDDGRITFLNEFGQRFFGYSETEILGQHVIGTIVPEN 362 Query: 506 P---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558 + + +IL+ + E+ + + K + S Sbjct: 363 ETTGRNLRPLMEDILADPQKFERNINENMRRNCER-VWIDWTNKVVLDESGRIKEILSIG 421 Query: 559 HDISEWKQEKN-------------------------KLSHAKKIAEKESSHKSDFLARVS 593 DI++ KQ + +L AK+ AE K FLA +S Sbjct: 422 SDITDRKQAEEQISRLNNDLRRHAKELEQRVADRTAELVIAKERAESADRIKPAFLATMS 481 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL +IIGF+ ++ + GPL N + + S +L ++ND+LDISKIE+G Sbjct: 482 HELRTPLNSIIGFTGIMLQELAGPL-NEEQRKQLTMVQSSSRHLLSLINDVLDISKIEAG 540 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 ++ L L ++ + + LV A +K + +R A++I D R ++Q+ LN+L+ Sbjct: 541 QLELSVTSFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINTAATDQRRLEQVVLNLLN 600 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ FT G + IS +++ + L V DTG G+ EL +PF QI + EG Sbjct: 601 NAVKFTEKG-YVHISCRIENDKYL-LSVSDTGTGIRPEELSGLFQPFHQIDTGLTRKYEG 658 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGL + K ++D G + S KG+ + FP Sbjct: 659 TGLGLSICKRLLDMMGGTIDVQSQWGKGSTFIVRFP 694 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 20/244 (8%), Positives = 63/244 (25%), Gaps = 8/244 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---GKTT 148 G + ++E + G +++G + + ++ L++ + Sbjct: 328 DGRITFLNEFGQRFFGYSETEILGQHVIGTIVPENETTGRNLRPLMEDILADPQKFERNI 387 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + V ID + + G RL+ Sbjct: 388 NENMRRNCERVWIDWTNKVVLDESGRIKEILSIGS--DITDRKQAEEQISRLNNDLRRHA 445 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + I +++ +++++ + + +L Sbjct: 446 KELEQRVADRTAELVIAKERAESADRIKPAFLATMSHELRTPLNSIIGFTGIMLQELAGP 505 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L E++ + + Q + + + + S S + V Sbjct: 506 LNEEQRKQ-LTMVQSSSRHLLSLINDVLDISKIEAGQLELSVTSFELRPSIEKMVKLV-- 562 Query: 329 CPIP 332 P+ Sbjct: 563 LPMA 566 >gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta thermophila DSM 6578] Length = 752 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 96/426 (22%), Positives = 183/426 (42%), Gaps = 30/426 (7%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPE--------DVDTRINKRKMEIEVMQLCSI 457 + P + +G+ ++ +++ +L I Sbjct: 171 EGAPYFSFLLDPVGIVAGGAVLLFYSGLGAAYLVTVIDFIAKAARSEIQLKKSEERLEGI 230 Query: 458 LEATSDGIAI---INREGII--LSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMN 510 ++ G+ + ++ G I + ++FG V+ IL+ PF + + + Sbjct: 231 VQNIP-GVILQLEMSVSGNIYYTYISDQAREIFGEKVDRILQNPFATLRFMPKEKLRAIV 289 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEK 568 H + + + L T+ + + + + + Y + D E + Sbjct: 290 HTIRNL--DRISVPLGWDVRLRTRRGYRWFRVTVSVTPSAEGTFYLNAIVLDTEEIHAYQ 347 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +L AK+ AE+ KS FLA +SHE+RTPL IIG SE++ + +EYA Sbjct: 348 ERLKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG----ELVEYAR 403 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I +G +L ++ND+LD+S++ESGK+ + P L + + K + Sbjct: 404 TIQTAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKSLRFVL 463 Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743 A+ +P ++ D + Q+ N++ NAI FT G ++++ EE ++ +VRD Sbjct: 464 EVASEVPAVVVSDEARLSQVLFNLVGNAIKFTSRG-EVVLRVWMEEAEEGRAKIVFQVRD 522 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ EL + + F Q+ R +G+GLGL +A+ +V+ G+ + S KG+ Sbjct: 523 TGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVESEEGKGSC 582 Query: 804 IEIIFP 809 + P Sbjct: 583 FTVRIP 588 >gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1346 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 125/840 (14%), Positives = 266/840 (31%), Gaps = 131/840 (15%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143 + G + L + G + + + + D++ L DP + LL Sbjct: 33 IFKTTLEGRFIYANRALAEIFGYSSPRDLIASVTDIATQLFADPVQWEEVRHLLDLHGIV 92 Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +GT + + + S F+GF + ++ + Sbjct: 93 KNYECRQIRRDGT--VFWASGSIQAVTDAKGKASHFQGF-VSDISDRKLAQDQWQSTFEA 149 Query: 203 KFSHLHEIKKGHS--SVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEYYAHKDDVLKT 256 + + H V + Q R + + +S+ ++ H + Sbjct: 150 LPDLIALVDNDHRILRVNNAMAEHLGLQPREIEGRFCYEVVHGLSAPPDFCPHSRTLRSR 209 Query: 257 EKYPLLTSEES--------SLPEQEDFHTINLNQYTKKQYF----------GTLQNNSKE 298 + EE + P ++ I + + + ++ + + Sbjct: 210 NEENAEVFEERLHGYFNVTTTPFRDAGGFILGSVHVARDITIQKHKHDVMQQAIEESRRS 269 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKC--------------------PIPFFVYSH 338 S + + D F+ S Sbjct: 270 EAHLSSMFESARAILTTKDFPSAARHIFDSVSSLIGSSAGYVALLADDGRENELVFLESG 329 Query: 339 GNLFYANPS-------------------FLLLTKYKSVDDIEIAGG--LSTLLDAPKLSD 377 G Y +P+ F D G L +L AP + D Sbjct: 330 GRPCYVDPALPMPIRGLRAQSYSLNAVVFENDFMNSQWMDFMPPGHVQLDNVLFAPLVLD 389 Query: 378 NNAIKPVMLYRSDRTCIAASARL---------------HTIQWNRENSLAMTFIPFEKAN 422 + + L A ++ EN ++ + + Sbjct: 390 EKTVGIIGLANKPGGFTEKDANAAKSFGDLAAIALRNSRNLEKLAENEQSLNYRLDLQRL 449 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 M + ++++ ++ +M+L I + E +++ Sbjct: 450 LMDLAMDFLNVPTDNLNQATDRA-----LMRLGQFTGTDRVYIFYYDYENHVMTNTHEWC 504 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNH-----------------YLTEILSLDLRQTL 525 G + + + L + N + + D++ L Sbjct: 505 A-PGIEPQIDNLQKIPLALNPEHVRMHNEGRPFYLPDVSKLDNNDPFRLHLEFQDIQSLL 563 Query: 526 EKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIA 578 +G + S+R + + + + L A + A Sbjct: 564 AIPLMGPEGCLGFVGLDSVRSTRTWSDSEINLFALLAKLLVNAQLRQSREQDLKDAMEQA 623 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E + KS+FLA +SHEIRTP+ +IG ++++ + P A I SG +L Sbjct: 624 EIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLDTELRP----EQRSLAESIQSSGEALL 679 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697 ++ND+LD SKIE+G++ L +L + + SL+ + A+EK + + ++P ++ Sbjct: 680 ALINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQV 739 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------VILRVRDTGVG 747 D ++QI N++ NAI FT G +++ + + ++ V+DTG+G Sbjct: 740 QGDPGRLRQILTNLVGNAIKFTHQGEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGIG 799 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +++ F Q+ S + GTGLGL +++ + + G+ + S +G Sbjct: 800 VPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKFWFT 859 Score = 104 bits (260), Expect = 6e-20, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 22/279 (7%) Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + +DK I F G YAN + + Y S D+ ++ + Sbjct: 16 QSVLPDAQDILDKATIGIFKTTLEGRFIYANRALAEIFGYSSPRDL--IASVTDIATQLF 73 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + L R + + + G Sbjct: 74 ADPVQWEEVRHLLDLHGIVKNYECRQIR---RDGTVFWASGSIQAVTDAKGKASHFQGFV 130 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D ++ + Q S EA D IA+++ + IL N A+++ G +I Sbjct: 131 SDISDRKLAQ-------DQWQSTFEALPDLIALVDNDHRILRVNNAMAEHLGLQPREIEG 183 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + + L + + + + Sbjct: 184 RFCYEVVHGLSAPPDFCPHSRTLRSRNEE--NAEVFEERLHGYF---NVTTTPFRDAGGF 238 Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 L DI+ K + + + A + + + +H S Sbjct: 239 ILGSVHVARDITIQKHKHDVMQQAIEESRRSEAHLSSMF 277 >gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1548 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 127/804 (15%), Positives = 252/804 (31%), Gaps = 90/804 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D I++ L G +G + +V L + + +L+ Sbjct: 619 LDRELRFVRINQRLADINGVPVEAHLGRTVREVLPDLGNTAESLLRPILETGEPLLNVEL 678 Query: 149 L--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 P + V ++ LP+ + + G + + + Sbjct: 679 RGQTPAQPGVERVWME-HFLPLKQDD-QVIGIS--VVCEEITERLQAEKSIADNEARLRG 734 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 E I +++ S + + L E Sbjct: 735 FVESNVVGILYGDIYGKIAEANDELLRIIGYTRAELQSGSISWIDLTPPEHLSLDQEAIA 794 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + P ++++ + ++ + + +ES ++ S +E Sbjct: 795 EARLRGACTPYEKEYIRKDGSRVPVLVGYSLVGEAREESVAFIL---DLSDRKRDEEALR 851 Query: 321 LTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGG---------LSTLL 370 ++ P V++ + N L Y + I Sbjct: 852 QLNLLIELSYEPILVWNLEQGIILWNQGCEQLYGYTRTEAIGQNSHQLLQTLHPLPLPDF 911 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 A + V + +R I+ + + T + + Q Q Sbjct: 912 LAQLEQERQWTGEVTQTTRTGQQVIVESRQQLIETRGQKLVLETNLNITERKQAELEREQ 971 Query: 431 NGIEPEDVDTRI----NKRKMEIEVMQLCSILEATSD----------------------- 463 + + ++ + + L+ ++ Sbjct: 972 LLLRVQRYAQQLHGLTQAALAINSASTIPATLDLVTEQAYRIIGCHQAVTSLTLGQNWAQ 1031 Query: 464 ---GIAIIN-----------REGI-ILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTP 506 I + + +G I + ++ ++ P + Sbjct: 1032 SIHAIYLSDKYAHWRNYEAKPDGSGIYALVGQFNRPLRLTQTELESHPNWRGFSQAADHH 1091 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + +L L L I L E + I E + Sbjct: 1092 PPLRGWLAAPLVGRDGHNLGLIQLSDKYEGEFSEADETILVQLAQMAAVAI-----ENTR 1146 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 A+ AE+ + K +FLA +SHE+R+PL I+G+S++++N+ F + Sbjct: 1147 LYQAEQEARAAAERTNRIKDEFLAILSHELRSPLNPILGWSQLLQNRPFDAATT---QQA 1203 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+R+ L + +++DLLD+++I GK+N+ PV L + AI V+ A K I + Sbjct: 1204 LTTIERNARLQIQLIDDLLDVARILRGKLNMETSPVDLVAVIEAAIDTVKTAALAKSIHL 1263 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------- 735 A I + D ++QI N+LSNAI FTP GG++ + E Sbjct: 1264 ELDLAQ-IGPVCGDATRLQQIVWNLLSNAIKFTPQGGRVEVRLGEVEGEAGTDQTVPSPH 1322 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L V DTG G++ L + F Q S + G GLGL + +++V+A+ G + Sbjct: 1323 FAKLTVTDTGKGISPDFLPHIFESFRQEDASTTRKYGGLGLGLAIVRSLVEAHGGTIWAD 1382 Query: 796 ST-PAKGTLIEIIFPLYDTSHPHD 818 S +G + FPL + + Sbjct: 1383 SAGEGQGATFTVCFPLLTPTPAQE 1406 Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats. Identities = 56/530 (10%), Positives = 138/530 (26%), Gaps = 38/530 (7%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILH 126 +SE F F A + +S + G ++ + Sbjct: 336 NSEERFRQLAENINAVFWIREAAEDRVSYVSPAYQRLWGLNPEELYTDPQVWVNYIHPDD 395 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + + + + +G+ + P+Y + + +R GI Sbjct: 396 REVVAQAFAQKAAIGQFDQEYRIVLPDGSL--HWVRDRCFPLYDQTGQV--YRFTGIAED 451 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNK 239 + +++ + + S + D + L ++ Sbjct: 452 VTATKQVEVALRDSEQRNELAMSVARMFSFEWEPSTDRVRRSSQCHAILPASGILTTEDT 511 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + ++ D LT E + + + ++ L + + Sbjct: 512 GYNFFQHIHPDDRDRFIALLQSLTPENPTYRTTYRLVGPDQVIVSLEESARALFDAQGKL 571 Query: 300 FEYLSHRNHPSLS-----------AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPS 347 + S A + PI V N Sbjct: 572 NRLIGIVGDVSERQRMELELQTSKAQLQQQLAELESIYQSAPIGLTVLDRELRFVRINQR 631 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + V+ L P L + + + + R T Sbjct: 632 LADINGV-PVEAHLGRTVREVL---PDLGNTAESLLRPILETGEPLLNVELRGQTPAQPG 687 Query: 408 -ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 E F+P ++ +Q + + + E + ++ + +L +E+ GI Sbjct: 688 VERVWMEHFLPLKQDDQ---VIGISVVCEEITERLQAEKSIADNEARLRGFVESNVVGIL 744 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQT 524 + G I N + ++ GY ++ + S+ + E Sbjct: 745 YGDIYGKIAEANDELLRIIGYTRAELQSGSISWIDLTPPEHLSLDQEAIAEARLRGACTP 804 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSH 573 EK + K+ + + + + + + D+S+ K+++ L Sbjct: 805 YEKEYI--RKDGSRVPVLVGYSLVGEAREESVAFILDLSDRKRDEEALRQ 852 Score = 120 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 70/562 (12%), Positives = 162/562 (28%), Gaps = 44/562 (7%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 E+ + D Q N + F F+ P T R Sbjct: 449 AEDVTATKQVEVALRDSEQR---NELAMSVARMFSFEWEPSTDRV--------RRSSQCH 497 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160 + G + G D + L +N +TT + + V Sbjct: 498 AILPASGILTTEDTGYNFFQHIHPDDRDRFIALLQSLTPENP-TYRTTYRLVGPDQVIVS 556 Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSV-- 217 ++ +A ++ + + R GIV L + L E++ + S Sbjct: 557 LEESARALFDAQGKLN--RLIGIVGDVSERQRMELELQTSKAQLQQQLAELESIYQSAPI 614 Query: 218 --------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + ++ E + ++ P+L + E L Sbjct: 615 GLTVLDRELRFVRINQRLADINGVPVEAHLGRTVREVLPDLGNTAESLLRPILETGEPLL 674 Query: 270 PEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPE 324 + T + + + Q++ + + E Sbjct: 675 NVELRGQTPAQPGVERVWMEHFLPLKQDDQVIGISVVCEEITERLQAEKSIADNEARLRG 734 Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 V+ + +G + AN L + Y + +G +S + P + + Sbjct: 735 FVESNVVGILYGDIYGKIAEANDELLRIIGYTRAEL--QSGSISWIDLTPPEHLSLDQEA 792 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + R C I+ + + + + D + + Sbjct: 793 IAEARLRGACTPYEKEY--IRKDGSRVPVLVGYSLVGEAREESVAFIL----DLSDRKRD 846 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + QL ++E + + I + N E I+ N+ +L+GY + + + L+ Sbjct: 847 EEALR----QLNLLIELSYEPILVWNLEQGIILWNQGCEQLYGYTRTEAIGQNSHQLLQT 902 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 P + +L ++ + + T E T ++ ++ R + + T +I+E Sbjct: 903 LHPLPLPDFLAQL-EQERQWTGEVTQTTRTGQQVIVESRQQLIETRGQKLVLETNLNITE 961 Query: 564 WKQEKNKLSHAKKIAEKESSHK 585 KQ + + ++ + Sbjct: 962 RKQAELEREQLLLRVQRYAQQL 983 >gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040] Length = 741 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 13/364 (3%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + AT D + +++ G +S N A +L G +P ++ + Sbjct: 247 MFYATQDPVILVDAGGQFVSANPAARQLIG-DRIPDYGEPIEQL--PEVGPLVKDL---V 300 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + L + G + + + + I+ + +++ DI+E ++ L A Sbjct: 301 KAGGLGKPGPIRLAGRAFDPRAVPIDSPIQAQIPLLGWCISLVDITERERAAEALREALS 360 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636 +AE + K+ FLA VSHEIRTPL ++G + V+ + + E+ I+ SG + Sbjct: 361 LAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKL----DEEQQEFLQVIEDSGQV 416 Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696 +L + D+LD+SK+E+GKM L +P +L A+ A +L A EK I + +++PR Sbjct: 417 LLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFSARAKEKGIGLHLEMHDDLPR 476 Query: 697 I-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGMTNYELE 754 + L D +Q+ N++SNAI FT +G + IS N ++L RV DTG G+ + Sbjct: 477 VILGDDHRFRQVVHNLVSNAIKFTETGA-VTISAAPAENGSILLVRVSDTGPGIPAEARD 535 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +PF Q+ + GTGLGL +++ + G + +G EI PL + Sbjct: 536 MIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVADDEPQGATFEIRLPLLPAN 595 Query: 815 HPHD 818 + Sbjct: 596 EAQE 599 Score = 38.9 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 64/279 (22%), Gaps = 30/279 (10%) Query: 67 YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 T +F V DA G + + IG+ G + + Sbjct: 239 TAAQGRTLMFYATQDPVILV---DAGGQFVSANPAARQLIGDRIPD-YGEPIEQL----- 289 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH- 185 + + DL+K GK + G D A+PI S + G+ I Sbjct: 290 PEVGPLVKDLVKAGGL--GKPGPIRLAGRAF----DPRAVPIDSPIQAQIPLLGWCISLV 343 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + + K + + L Sbjct: 344 DITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLN-------------GVLGM 390 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + L E+ L E S L+ + TL+ L Sbjct: 391 ASVLGETKLDEEQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEG 450 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 + ++G L E D P + Sbjct: 451 ARALFSARAKEKGIGLHLEMHDDLPR-VILGDDHRFRQV 488 >gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum H04402 065] Length = 522 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 161 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 218 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG + I + V+ + + ++ T + Sbjct: 219 ANKLFGIKRDIIGENLMDNIRDFELEKVLRDKEPGYKEIGILWPEKRTLRVKTTD----- 273 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 274 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 315 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 316 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 370 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 371 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 429 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 430 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 488 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 489 IVKHIVLSINGKIEVKSQPKKGTKFIVKIPLS 520 >gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM 16994] Length = 977 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 99/381 (25%), Positives = 180/381 (47%), Gaps = 13/381 (3%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + K+ E +++E+ + IA++NR+G++++ N + G+ ++I Sbjct: 242 EDIIQRNELENKLLFEKSINKTLVESANAIIAMLNRDGVMININPYGERFTGFTQQEIAS 301 Query: 495 KPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 +P+ FL + + ++ + ++ + + E++ + Sbjct: 302 EPYFWARFLPPEMHDKVVNIISNARKGTITRSFQNAWVSKDGIERMFEWSNALVLDEKGQ 361 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+E K+ + +L AK+ AE + K+DFLA +SHEIRTPL IIG +E++ Sbjct: 362 MQYVTTIGIDITEQKERQLELEKAKEAAETAAKAKADFLANMSHEIRTPLNGIIGLTELV 421 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 P + ++ + S + +LDI+ND+LD SKIE+GK +L +P L+ + Sbjct: 422 LKTDLEP----KQRDFLEKSNLSSHALLDIINDILDYSKIEAGKFDLENKPFELNNVIQN 477 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +SL + A +K I++ N ++ D + QI N++ NA+ FT SG I I Sbjct: 478 IMSLFEFQAVQKGIILTYDIQLNENVMIGDALRLTQILTNLVGNAVKFTESG-HIGIRVI 536 Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T E + V DTG+GM K + F Q S + G+GLGL ++K +V Sbjct: 537 STDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQADTSITRKYGGSGLGLAISKQLVQ 596 Query: 787 ANMGKFYIFSTPAKGTLIEII 807 G ++ S G+ Sbjct: 597 MMGGDIWVESEEGIGSRFIFT 617 >gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 1082 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 122/736 (16%), Positives = 263/736 (35%), Gaps = 48/736 (6%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 + + L A +++G L D+ + + + T K + +G Sbjct: 227 WCQYDDALAA----DAEQLVGKTLADLQIPGLSN--------MAKTATKTLKPLRFEFQG 274 Query: 155 T-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 + P+++ + +F+G + + K + + + K Sbjct: 275 LFGNDFWYNATIAPVFTDDLQFTG-NFTLTLTDITELKTTTSKLKENELVLYNEQIVAKI 333 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------YYAHKDDVLKTEKYPLLTSEES 267 S S + + + H +D K + Y + Sbjct: 334 GSWWTHVSGRDISWSNNLFSILEVTDIPPDRSKLNYYISLVHPEDREKAQLYFANLGDNP 393 Query: 268 SLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + T N K G +++ + + + S + + Sbjct: 394 LNEFEHRLITPKGNLKYFKVVSGYPVKDGQGKVVKMAGIVQDITDSILAHKTIRKNEAEL 453 Query: 327 DKCPIPFFV--YSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNN 379 + + + + + + + + ++ L P N Sbjct: 454 MQVQAIAKIGGWRWDIILNNLAWSDEMYRIYEL-DKEQVKHEDHFKLLLSFVHPDDRPNV 512 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + R+ + I ++ I + + G + D Sbjct: 513 AGIFKDHLKIVRSFVEY-----RIITPEGKLKYLSLIVGKTLAKDGAIKSILGTLQDQTD 567 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + E + ++LE + ++++G I+ N+ ++ + GY D++ + Sbjct: 568 RKKIEFDFERAENKYKNVLETVNLAAVTLDKQGDIVFCNKHLADIIGYDKVDLIGMNWAD 627 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLT 557 + + + + S + +++++S + + F + Sbjct: 628 NFVP--AKLQDQFRQWLDSDSFYAQHTSPIICRNGKQRIISWKNTVTHDEFGKIVETTSI 685 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI++ K+ + L AK+ AEK S KS+FL+ +SHEIRTP+ A+IG + ++ P Sbjct: 686 GEDITDIKKAREALIIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQDNPAP 745 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R +EY N + S N +L+++ND+LD +KIE+GK+ L+ P ++++ + + Sbjct: 746 ----RQLEYLNTLRFSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKN 801 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---- 732 A + + IP ++ D + Q+ N+LSNA+ FT G + + Sbjct: 802 KAEANSSYLELKLDDRIPANLIGDQLRLGQVLNNLLSNAVKFTRDG-TVFLKLELEQLRY 860 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + DTG+G++ ++K PF Q NS Q GTGLGL + K +++ + Sbjct: 861 DKVTIKFIIEDTGIGISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTI 920 Query: 793 YIFSTPAKGTLIEIIF 808 + S +GT Sbjct: 921 KLVSNIGEGTQFSFSI 936 Score = 38.9 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 16/140 (11%), Positives = 32/140 (22%), Gaps = 5/140 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + ++ L IG +IGM D + + L + + T+ Sbjct: 596 LDKQGDIVFCNKHLADIIGYDKVDLIGMNWADNFVPAKLQ--DQFRQWLDSDSFYAQHTS 653 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + I + + G R + Sbjct: 654 PIICRNGKQRI-ISWKNTVTHDEFGKIVETTSIG--EDITDIKKAREALIIAKENAEKSS 710 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 K S+ + Sbjct: 711 RFKSEFLSIMSHEIRTPMNA 730 >gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1] gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 1616 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 121/720 (16%), Positives = 235/720 (32%), Gaps = 30/720 (4%) Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLY 158 + A + I + D++ +++ + I +L Q Sbjct: 407 RRFAAPLEALAQESIRIGRLDLARPVNVASDLGEIQELSAAQEAMREALLSSTTRLEEAN 466 Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 ++ + R E + +R A + Sbjct: 467 TTLEAR---VLERTEELEHSK--STAEWSRQLMRDMADSLPCAAFRFEVAPSGDQSFRFI 521 Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 K + +P + + E+ L S + L + H Sbjct: 522 SAKAEEIWGYTPDELINEPDLRFWRIHPGDLAKAHQALEEALLEGSSTNQLYRVMNRHGE 581 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 T+ + +L A + V Sbjct: 582 ARWIETRAMASRLADGTRVWNGYWLDVTEREEALAAMTGAMEEQSAIFQSAGLGIAVIRD 641 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 ++ +N S L Y + + G+ + + + + Sbjct: 642 RHIVRSNKSLAQLLGYGPSELDGQSTGV--VFANEGDFE-RMGREAYPALAQGETFQGDW 698 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + + + + D R + +++ +L ++ Sbjct: 699 E---YRRKNGTTFWGRTSGRAI-DSGDLSKGSVWVCDDITDRRNWEHRLQQAEERLRALT 754 Query: 459 EATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYL 513 + + + EG R V + G + +L + + + Sbjct: 755 NSVPAAVFELRNEGEDFWFTFMGRQVRGILGVGADQLLANAGRLYGTVRDGDRETLESVI 814 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLS 572 L +R + + EE+ + + + ++ D+S K + L+ Sbjct: 815 EGALEQGVRFSTQYRLDAP-GEERWVRMEAVPIVAQAGGGTWAGFFQDVSAEKLAEAALT 873 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK++AE + KSDFLA +SHEIRTP+ AIIG S + P R +Y I Sbjct: 874 RAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTP----RQHDYVKKIQS 929 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L I+ND+LD SKIE+GK+ + LD+ + +L+ K + + + Sbjct: 930 AGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPS 989 Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVG 747 +PR ++ D + QI +N +NA+ FT G+I I E + VRDTG+G Sbjct: 990 EVPRTLVGDSLRLGQILINYANNAVKFT-ENGEIDIIARVKERSETEVLLYFAVRDTGIG 1048 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +T + + + F Q S + GTGLGL ++K + + G+ + S KG+ Sbjct: 1049 ITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFT 1108 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 32/384 (8%), Positives = 99/384 (25%), Gaps = 28/384 (7%) Query: 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQ 140 RF + IS + + G ++I +R + + + + L Sbjct: 507 RFEVAPSGDQSFRFISAKAEEIWGYTPDELINEPDLRFWRIHPGDLAKAHQALEEALLEG 566 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 ++ + G ++ A + R ++G+ + A Sbjct: 567 SSTNQLYRVMNRHGEARWIETRAMASRLADGTRVWNGYW-----LDVTEREEALAAMTGA 621 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK 255 ++ S + + +V ++++ + S +S + + + + + + Sbjct: 622 MEEQSAIFQSAGLGIAVIRDRHIVRSNKSLAQLLGYGPSELDGQSTGVVFANEGDFERMG 681 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLS 312 E YP L E+ ++ N + + + + + + + + Sbjct: 682 REAYPALAQGET-FQGDWEYRRKNGTTFWGRTSGRAIDSGDLSKGSVWVCDDITDRRNWE 740 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E + P F + + + + AG Sbjct: 741 HRLQQAEERLRALTNSVPAAVFELRNEGEDFWFTFMGRQVRGILGVGADQLLANAG---R 797 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L + D ++ V+ + + + + Sbjct: 798 LYGTVRDGDRETLESVI----EGALEQGVRFSTQYRLDAPGEERWVRMEAVPIVAQAGGG 853 Query: 429 PQNGIEPEDVDTRINKRKMEIEVM 452 G + ++ + + Sbjct: 854 TWAGFFQDVSAEKLAEAALTRAKE 877 >gi|82702619|ref|YP_412185.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410684|gb|ABB74793.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 835 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 100/551 (18%), Positives = 195/551 (35%), Gaps = 30/551 (5%) Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 S D ++ T ++ E E + ++ Sbjct: 173 SREVSPDAKQTGVSGVLVTVTETTELVRARAHEAKKIRFKEALAEQALRESEQRFCQALE 232 Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + + + AN +FL ++ + D+ A L+ + + Sbjct: 233 IETVGIIFFDSENRITEANDAFLEMSGFSRDDERAGALRCDELIPPEW--RMSTSRAAEE 290 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ L + + A+ + N+ + + + + Sbjct: 291 LKAMGRVAPHEKELF--RKDGSRWWALIAMKQLLGNEA------VAYVVDITERKRVEHS 342 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + + ++ EA+ I ++ +G + N+ +FG +E+++ + L + Sbjct: 343 LRESEARFRALAEASPALIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDA 402 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDIS 562 L L + T E + L+ + + DI+ Sbjct: 403 PAYVAAFERALHDRAH--LRQRVRARTAEGEWRWLKSYALPWFTVRDEYAGHVGISIDIT 460 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + L + K +FLA ++HE+R PL I +I GP G Sbjct: 461 EAVAAETAL-------LEADRRKDEFLATLAHELRNPLAPIASALTLIA----GPDGAAE 509 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 I+R N ++ +V+DLL+IS+I SGK+ L +P L + A EK Sbjct: 510 IPRLLPVINRQVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQIREK 569 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + S + + D ++QI N+L+NA+ +T GG+I + T + + ++ V+ Sbjct: 570 ELELSISITDTPLIVYGDTVRLEQIFANLLNNAVRYTGRGGKIWL-TARQEDHKAVVSVK 628 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801 D G+G+ L + F Q S EG G+GL L +V + G S KG Sbjct: 629 DNGIGILPGMLPRLFDMFAQERRSGMGTQEGLGIGLNLVDRLVQMHGGSVEASSEGKDKG 688 Query: 802 TLIEIIFPLYD 812 + + PL + Sbjct: 689 SEFTVRLPLSE 699 Score = 78.5 bits (192), Expect = 5e-12, Method: Composition-based stats. Identities = 42/400 (10%), Positives = 101/400 (25%), Gaps = 46/400 (11%) Query: 99 SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTN 156 ++ +G +G + + + +++R+ ++ + + G+ Sbjct: 94 NDGYRNLMGAKHPDGLGQPVSECWPEVWHFLAPICEGVMERRQSFSFDDQPLVINRTGSP 153 Query: 157 LYVPIDLAALPIYSRNREF----------SGFRGFGI-VHVNRVDND------------- 192 L P+ F +G G + V Sbjct: 154 EEAFFKLTYSPVPDIKDSFSREVSPDAKQTGVSGVLVTVTETTELVRARAHEAKKIRFKE 213 Query: 193 --PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEY 246 + +++F EI+ + I R + +L Sbjct: 214 ALAEQALRESEQRFCQALEIETVGIIFFDSENRITEANDAFLEMSGFSRDDERAGALRCD 273 Query: 247 YAHKDDVL--KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + L + P +++ + +++ L N ++ + Sbjct: 274 ELIPPEWRMSTSRAAEELKAMGRVAPHEKELFRKDGSRWWALIAMKQLLGNEAVAY-VVD 332 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + E E + P + V GN Y N + + KS++++ Sbjct: 333 ITERKRVEHSLRESEARFRALAEASPALIWQVDPQGNAVYLNQRYQYMFG-KSLEELMPT 391 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G LL A L+ AR +W + Sbjct: 392 GWRE-LLHPDDAPAYVAAFERALHDRAHLRQRVRARTAEGEWR-----WLKSYALPWFTV 445 Query: 424 FPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEA 460 E GI + + + + + + + L Sbjct: 446 RDEYAGHVGISIDITEAVAAETALLEADRRKDEFLATLAH 485 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 68/254 (26%), Gaps = 12/254 (4%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE F W +D G +++ G +++ ++ Sbjct: 345 ESEARFRALAEASPA-LIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDAP 403 Query: 129 PN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 L + + EG + + ALP ++ E++G G I Sbjct: 404 AYVAAFERALHDRAHLRQRVRARTAEGE--WRWLKSYALPWFTVRDEYAGHVGISI--DI 459 Query: 188 RVDNDPRALGKRLDKK-----FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 D++ + HE++ + + I R+ ++ Sbjct: 460 TEAVAAETALLEADRRKDEFLATLAHELRNPLAPIASALTLIAGPDGAAEIPRLLPVINR 519 Query: 243 LTEYYAHK-DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 Y DD+L+ + E P N + + +Q S + Sbjct: 520 QVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQIREKELELSISITD 579 Query: 302 YLSHRNHPSLSAYF 315 ++ Sbjct: 580 TPLIVYGDTVRLEQ 593 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 22/242 (9%), Positives = 57/242 (23%), Gaps = 16/242 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNHIGDLLKR-QNTWYGK 146 D+ + E ++ + G L ++ + + LK + Sbjct: 242 DSENRITEANDAFLEMSGFSRDDERAGALRCDELIPPEWRMSTSRAAEELKAMGRVAPHE 301 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L+ +G+ + I + + G V + + +F Sbjct: 302 KELFRKDGSRWWALIAMK---------QLLGNEAVAYVVDITERKRVEHSLRESEARFRA 352 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLL 262 L E + + ++ + + H DD + Sbjct: 353 LAEASPALIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDAPAYVAAFERA 412 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + L ++ T K Y E ++ + + + Sbjct: 413 LHDRAHLRQRVRARTAEGEWRWLKSYALPWFTVRDEYAGHVGISIDITEAVAAETALLEA 472 Query: 323 PE 324 Sbjct: 473 DR 474 >gi|144900968|emb|CAM77832.1| sensor histidine kinase protein [Magnetospirillum gryphiswaldense MSR-1] Length = 845 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 123/733 (16%), Positives = 253/733 (34%), Gaps = 37/733 (5%) Query: 98 ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTWYGKTTLWPIEG 154 S L + + + L DV + L+ + + Sbjct: 124 CSRRLAVLL--TLPRGLDSSLEDVLACFDPHDGLRLETAIGVLRDEGQAFEVDLTLSAGS 181 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKG 213 + AA P + FR V L + Sbjct: 182 RRIRAMGVRAASPAGDMLADLVWFRDVSDSAVAVDDLARSLQALAADATYLKALIDTLPM 241 Query: 214 HSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + E + + + + DD ++ + + + P Sbjct: 242 PVWLRDEDLSVLMVNKAYAAAVEATSAEAAVQAQVELASDDHVREARALAARARAAGEPR 301 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP---ETVDK 328 FH + + +H + ++ + E +++ Sbjct: 302 SASFHLVLAGERRLAHITEMPLEVGDTLLTAGFIEDHTRVEELQEQLSHHVSAQVEVLER 361 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 +++ L + N +F L + + D +E ++DA + Sbjct: 362 LSTAIAIFTTDTRLAFFNTAFSRLWRLER-DWLENQPTYGAVMDALRDRRLLPEAADYRA 420 Query: 388 RSDRTCIAASARLHTI----QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + + + I +L P + DT Sbjct: 421 LKEEELRRFISLIDPIETLMHLPDGRTLRRVVSPHP-------YGGLIFTYEDFTDTLAM 473 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R + + L+ +G+A+ + + +N A ++++G V+D+ +P L + Sbjct: 474 ERSFNTAMAVQRATLDHLHEGLAVFGDDRRLKLSNPAFARMWGLSVDDLAGEPHLNELVE 533 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------LSLRIIIKKLPFSSCYSL 556 + + +G + + + L LP + Sbjct: 534 RLRPYFEGRPDRASTWAPARERLLALVGERRGGEWRLERQDGMILDCASVPLPDGASLLA 593 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + D+++ + + L + + KS+F++ VS E+ PLT IIGF+E++ + FG Sbjct: 594 FL-DVTDTARVERALIERNEALAAADTLKSEFMSNVSAEVAKPLTTIIGFAEMLDSDYFG 652 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 L R +Y I +GN + ++ D+LD++ IE+G + L + V + +S + LV+ Sbjct: 653 KLSK-RQHDYMKGIVEAGNALKSLIADILDLAAIEAGHLTLELDTVDIHPMLSSVLGLVR 711 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 EK++ + ++ I+AD R ++Q+ N++ NA+ +TP+GG I + E Sbjct: 712 ERVREKKLQLDFDCPLDMGWIVADQRRLRQVMFNLIGNAVKYTPNGGAIAVRAERRD-GE 770 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V L V DTG G+ ++E+ K F + +G GLGL L + V+ + G + S Sbjct: 771 VALIVADTGPGIPPEDMERVFKSFVRT---IHDGQDGAGLGLALVRRFVELHGGTVELDS 827 Query: 797 TPAKGTLIEIIFP 809 P +GT + + P Sbjct: 828 VPGQGTTVTVRLP 840 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 42/386 (10%), Positives = 102/386 (26%), Gaps = 27/386 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D + +++ + + + +++ H+ + + Sbjct: 243 VWLRDEDLSVLMVNKAYAAAVEATSAEAAVQAQVELASDDHVREARALAARARAAGEPRS 302 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + G I L + G + + + + Sbjct: 303 ASFHLVLAGERRLAHITEMPLEVGDT------LLTAGFIEDHTRVEELQEQLSHHVSAQV 356 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + E ++ + + L R++ Y D L+ + + Sbjct: 357 EVLERLSTAIAIFTTDTRLAFFNTAFSRLWRLERDWLENQPTYGAVMDALRDRRLLPEAA 416 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----------FEYLSHRNHPSLSAY 314 + +L E+E I+L + + F Y + ++ Sbjct: 417 DYRALKEEELRRFISLIDPIETLMHLPDGRTLRRVVSPHPYGGLIFTYEDFTDTLAMERS 476 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL---L 370 F+ + T+D V+ L +NP+F + SVDD+ L+ L L Sbjct: 477 FNTAMAVQRATLDHLHEGLAVFGDDRRLKLSNPAFARMWGL-SVDDLAGEPHLNELVERL 535 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + R + R + R++ + + + Sbjct: 536 RPYFEGRPDRASTWAPARERLLALVGERRGGEWRLERQDGMILDCASVPLPDGAS----- 590 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456 + DT +R + L + Sbjct: 591 LLAFLDVTDTARVERALIERNEALAA 616 >gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 545 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 110/537 (20%), Positives = 216/537 (40%), Gaps = 16/537 (2%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + ++ + + +L+ + ++ P+ Sbjct: 1 MPSDDCRQAATRDAQGDPGQADPGHPDLDDLIALAKLLRVSKARYRTLLEAVPVGILHAD 60 Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 G + + N +T D + AG L + + + + Sbjct: 61 AGGRVLFVNSRLAGITGLSP-DRLLGAGWLDAVHPEDRARVAADWRIEPAGEGRSAPRST 119 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 R H + E + + + + + Sbjct: 120 DFRFHDPDGEGAERRVLCQRVAL------EEGGFIATVTDVSEYVHTANALRLSEARNEG 173 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL+ ++ I I+ GI++S NRA +FG +D+L +P + + Sbjct: 174 ILDTVAEAILTIDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLDF 233 Query: 517 LSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLS 572 + + + + + + Y+ + D++E ++ + +L Sbjct: 234 APGQTMALVTRDRAAEAERADGTRFPVELSVSASEVEGRRLYTAILRDVTERRRAEAELL 293 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 AK AE KS F+A +SHE+RTPL A+IGFS++++ Q G+ + + + I + Sbjct: 294 AAKAAAEAGDRAKSTFIAVMSHELRTPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQ 353 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692 +G +L I++D+LD++++ESG ++L V L V ++ ++ A + + + + Sbjct: 354 AGRRLLAIIDDILDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVALDG 413 Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 ++P + D R + Q N+LSNAI F+ G ++ ++ + V L VRD GVGM + Sbjct: 414 DLPPLRGDWRRLGQALGNLLSNAIKFSHPGAEVALAAAIAEDGWVELSVRDQGVGMRPED 473 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +++A+ PF QI + EG GLGLPLA+ +V+A+ G + S P G + P Sbjct: 474 IDRALAPFAQIDQAATHHHEGVGLGLPLARRLVEAHGGVLRLDSAPGLGCTATLRLP 530 Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 17/235 (7%), Positives = 49/235 (20%), Gaps = 17/235 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---IDPNNHIGDLLKRQ-NTWYG 145 DA G + ++ L G +++G D + + I + + Sbjct: 60 DAGGRVLFVNSRLAGITGLSPDRLLGAGWLDAVHPEDRARVAADWRIEPAGEGRSAPRST 119 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G + + F V + + + Sbjct: 120 DFRFHDPDGEGAERRVL--CQRVALEEGGF-----IATVTDVSEYVHTANALRLSEARNE 172 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + E + S + + + D+L+ L Sbjct: 173 GILDTVAEAILTIDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLD 232 Query: 263 TSEESSLPEQEDFHTINLNQY---TKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + ++ + + + Y + + Sbjct: 233 FAPGQTMALVTRDRAAEAERADGTRFPVELSVSASEVEGRRLYTAILRDVTERRR 287 Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats. Identities = 31/246 (12%), Positives = 61/246 (24%), Gaps = 18/246 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G L + G A ++ L + + + T T Sbjct: 185 IDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLDFAPGQTMALVTR 244 Query: 149 LWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204 E P++L+ E G R + I+ A Sbjct: 245 DRAAEAERADGTRFPVELSVSAS-----EVEGRRLYTAILRDVTERRRAEAELLAAKAAA 299 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K +V + +P + +++ L A D L + + + Sbjct: 300 EAGDRAKSTFIAVMSHELR-----TPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQA 354 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L +D L+ + +L + F + +G ++ Sbjct: 355 GRRLLAIIDDI----LDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVA 410 Query: 325 TVDKCP 330 P Sbjct: 411 LDGDLP 416 >gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum DSM 5476] Length = 586 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 79/367 (21%), Positives = 165/367 (44%), Gaps = 25/367 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQN 504 ++E + ++L S+L + ++G+ ++ + ++ TN A ++FG P + ++ K + Sbjct: 229 QLEEQNVKLSSMLNSMTEGVVAVDTKFRLILTNPAAHEMFGLPEPKGLIGKNIYGLMRNE 288 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 ++ L E+ ++ E ++L L + D++ Sbjct: 289 EFYLL---LEEVAESGRSRSRELEWQVPGGS-RMLRLNAAPFFRQGGEPYGVLFVVEDVT 344 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + ++DF++ VSHE++TPLT+IIGF + +K Sbjct: 345 QIRRLE--------------QMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAM--EDADT 388 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + + I + ++ D+L +S IES +++ PV+L E + L++ A +K Sbjct: 389 ARHFLDIISIESGRLYRLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDK 448 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 ++ +N+P + + Q+ +NI+ NA+ +T G I T + + + V Sbjct: 449 QLAFEIRVEDNLPPFACNRDRISQMLINIIENAVKYTEHGSVIT--TIEKRGDNLKICVS 506 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ +L++ + F ++ + GTGLGL + K +V G + S KG+ Sbjct: 507 DTGIGIPADQLDRVFERFYRVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGS 566 Query: 803 LIEIIFP 809 I P Sbjct: 567 EFTIFLP 573 >gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306] Length = 631 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N +F T + LL + I + Sbjct: 13 IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 66 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + PE + + + + +R++ + ++ + Sbjct: 67 KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 118 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +++ +G++ N A + FG + ++ L + SL Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569 ++ L + + + + + + + + D++E ++ + Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + Y + + Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 293 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +++D+LD+S + GK+ L E + L E V EA++ +L A K ++ Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 353 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +L D ++Q+ N+LSNAI FTP+ G+I + + +++ V D+G G+ Sbjct: 354 VPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 412 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L F Q + + G GLGL + + +V+ + G+ S KG + Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472 Query: 809 P 809 P Sbjct: 473 P 473 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 92 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + +++ + + D ++ L + + Sbjct: 268 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + L + + + + P+ Sbjct: 328 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 386 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 387 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHVPDQAKRPRRELRRRLMSEQIVEARALNGLR 506 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 549 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 ++ + ++ + E E D P+P +V G + + N ++ Sbjct: 84 EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++I+ G + D+ L S + A L + + Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 + +I +TN A + G + L ++ + Y + + + Sbjct: 10 DYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEWFDRYGHVARTGNR---IHFEMQ 65 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + S+ P + ++ DI+E K+ + +L+ ++ Sbjct: 66 AKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSA 114 >gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 523 Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats. Identities = 106/383 (27%), Positives = 186/383 (48%), Gaps = 18/383 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R + +L I+E D GI ++R G + + N ++ GY ++I+ K F+V Sbjct: 3 AERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSV 62 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555 F + + + + K+ ++I +S Sbjct: 63 FYLPEECPQHPDM--ALREATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFS 120 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DIS+ + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ Sbjct: 121 KITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL----- 175 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV Sbjct: 176 DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLV 235 Query: 676 QLYANEKRILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A + I ++ + + ++AD + + Q+ LN+LSNAI + GQ+ I + Sbjct: 236 SPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSD 294 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V + V DTG G+ + + KPF ++ EGTGLGL L+K+M++ G Sbjct: 295 E-RVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLS 351 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + +TPA+G + PL P Sbjct: 352 VQNTPAEGCRFILELPLVLVHAP 374 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 28 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 86 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 87 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 144 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 145 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 202 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E + P Sbjct: 203 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 258 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 259 VADRQRLIQVLLNLLSNAI 277 >gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 769 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 133/678 (19%), Positives = 257/678 (37%), Gaps = 55/678 (8%) Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + + +G + ++ + D A + G S V D F + S Sbjct: 105 DSGDITGAQARLAKYLPQDRLDSGAFVLLVQASGKVFAATTAGLSHVGSNVGDFFPEVSA 164 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 R ++ + + + ++ + + Sbjct: 165 --IRRFGDRAGVIETTIGGVPHYAEITLMGNAGGYIVAATSLDEIGRLWREELALNVTLF 222 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANP 346 ++ Y + D E + + + + F+ + Sbjct: 223 AGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFDFENREFFWSR 282 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 S + D G + L+ D+ + + ++ ++ Sbjct: 283 SMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIGKGASGQVD-QIFRMRHA 337 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + M + M GI + + ++ +L +E TS+ Sbjct: 338 GGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFV 396 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + ++ ++ N + +G P ++ + + + +S Sbjct: 397 LWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTV---NAAAARPVIERRISDADGSGYS 453 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------------- 573 + T +E+ L + + DI+ K+ + +L Sbjct: 454 RTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 510 Query: 574 ----------------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 K+ AE + KS+FLA +SHE+RTPL AI+GFSE+++ Sbjct: 511 ASRQTLEIQKSELSTANSNYQAEKERAEAANKAKSEFLANMSHELRTPLNAILGFSEILQ 570 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E + L + E+ Sbjct: 571 NQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDLVPLIEES 630 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + A EK I+I + + ++AD R++KQ+ LN+LSNA+ FT +GG+I + T Sbjct: 631 LRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRR 689 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V++ + DTG+G+ L K +PF Q+ + G+GLGL +++++ + G+ Sbjct: 690 VD-GAVVVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTSLHGGR 748 Query: 792 FYIFSTPAKGTLIEIIFP 809 I S A GT+I + P Sbjct: 749 MKIRSREAVGTVISLRIP 766 Score = 45.4 bits (106), Expect = 0.042, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 54/247 (21%), Gaps = 7/247 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + +G M + + ++H D I + + + Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIGKGASG 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I S + GI + D++ Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + + + V + + Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTVNAAAARPVIERR 443 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S+ ++ + ++ + S + L Sbjct: 444 ISDADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503 Query: 323 PETVDKC 329 D Sbjct: 504 ATIGDLS 510 >gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum NCTC 2916] gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum NCTC 2916] gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto] Length = 569 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 175/392 (44%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG DI+ + + L ++L E L K + Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 II K + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIKINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 631 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 92/481 (19%), Positives = 189/481 (39%), Gaps = 32/481 (6%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N +F T + + LL + L I + Sbjct: 13 IRTTNGAFERYTGLSTNAL---NISIRDLLPE---HEQEWFDRYGLVARTGNRIHFEMQA 66 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + P+ + + + + +R++ + ++ + Sbjct: 67 KALKR--------WYSVDAFRVGRPDQGRVAVLFMDITERKRVERELAESEARFSALADG 118 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +++ +G++ N A + FG + ++ L + SL Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569 ++ L + + + + + + + + D++E ++ + Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + G+ Y + Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--EEGHTTYKG-LSV 293 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +++D+LD+S + GK+ L E + L E V EA++ +L A K +++ Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILKLH 353 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +L D ++Q+ N+LSNAI FTP+ G+I +S + +++ V D+G G+ Sbjct: 354 VPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIE-RDDGHLVVSVCDSGDGIA 412 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L F Q + + G GLGL + + +V+ + G+ S KG + Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472 Query: 809 P 809 P Sbjct: 473 P 473 Score = 74.7 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 46/463 (9%), Positives = 116/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 92 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288 + +++ H + +++ + + D ++ L + Sbjct: 268 TTILGWSELLLQRVEEGHTTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + + E + L + L + + + + P+ Sbjct: 328 LAEQVREALNTQELAAEGKDQILKLHVPPTPCLVLGDATRLQQVVWNLLSNAIKF-TPAH 386 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 387 GRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 506 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+++ G Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALLDHRGH 549 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 + + + ++ + E E D P+P +V G + + N ++ Sbjct: 84 DQGRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++I+ G + D+ L S + A L + + Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249 >gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 929 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 124/642 (19%), Positives = 225/642 (35%), Gaps = 26/642 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + +G D + ++ + S +E+ S +R + + L + Sbjct: 56 DANPAFMTIGHVADGRLLEVNPAFERESGYRREEVLGRSTLELNLWVRPEERDEFLRQMR 115 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSH 305 A + + E +L D T + + Sbjct: 116 ATGSVRDFEANFRAKSGEIRTLLLNADILAGEGPACMLTVGIDITERRRREQVQNATYRI 175 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 + + S + P F+ Sbjct: 176 SQAALADNDLAAFFAEIHLIIAGLMPARNLYVALLSLDRSLLSFPYFVDERSTAPAPRKP 235 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-----TIQWNRENSLAMTFI 416 G +LD K A + +L R A A + + Sbjct: 236 GNGLTEYVLDTAKPLLTTADELTVLLRERGRYQAMGAPAALWLGAPLLVEGRAIGVIAVQ 295 Query: 417 PFEKANQFPENMPQNGI-----EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E + V R + Q I E +G+ + Sbjct: 296 DYSNPKAYGEEEQRLLTFVAEQAATVVHRRQIHAAIRQAEEQYRGIFENALEGLYQSSPS 355 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKIT 529 G L N A++++ GY + L Q +L D E Sbjct: 356 GRFLRANSALARMCGYESSEQLLHAINDIGHQIYVDEHRREQFLELAKVHDQVTDFESEI 415 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 +S + + + + DI++ ++ L AK+ A+ S KS Sbjct: 416 FRRDGSRIWISESVRVVRNSAGELARFEGVAIDITQQREAARALQAAKEAADAASGAKSQ 475 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA VSHE+RTPL I+G++++++ PL + E I S +L ++ND+LD+ Sbjct: 476 FLASVSHELRTPLNGILGYTQILRRD---PLLGEKQREGIRVIHESAEHLLVLINDVLDL 532 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+G++ LH +L E + A + A EK +L+ T+ A ++P + D ++Q Sbjct: 533 SKIEAGRIELHPGDFALAEFAAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQ 592 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N+L NA+ FT GG ++ S + ++ + V DTG G+ +L + +PF Q+ S Sbjct: 593 VVFNLLGNAVKFTAQGG-VVFSISSSAGGGLRFSVSDTGRGIAAADLSRIFEPFTQVGES 651 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL +++++V+ G+ + S P G+ Sbjct: 652 TGAAT-GTGLGLAISRSLVERMGGRLQVESKPGWGSRFWFDL 692 Score = 89.3 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 46/447 (10%), Positives = 114/447 (25%), Gaps = 49/447 (10%) Query: 45 CHDSFEQSNFTDQNQES--VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102 S + QE+ VS + +SE+ F T A G L E++ Sbjct: 20 SASPNAASTELARVQEALRVSEASRRESESLFAKTFDANPAFMTIGHVADGRLLEVNPAF 79 Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162 + G +++G +++ + + + ++ + + + + + Sbjct: 80 ERESGYRREEVLGRSTLELNLWVRPEERDEFLRQMRATGSVRDFEANFRAK-SGEIRTLL 138 Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---------FSHLHEIKKG 213 L A + G I R + A + F+ +H I G Sbjct: 139 LNADILAGEGPACMLTVGIDITERRRREQVQNATYRISQAALADNDLAAFFAEIHLIIAG 198 Query: 214 HSSVEK------------------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + P + V + D L Sbjct: 199 LMPARNLYVALLSLDRSLLSFPYFVDERSTAPAPRKPGNGLTEYVLDTAKPLLTTADELT 258 Query: 256 TEKYPL--------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + P + I + + +++ + Sbjct: 259 VLLRERGRYQAMGAPAALWLGAPLLVEGRAIGVIAVQDYSNPKAYGEEEQRLLTFVAEQA 318 Query: 308 -----HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + A + E + + S G AN + + Y+S + + Sbjct: 319 ATVVHRRQIHAAIRQAEEQYRGIFENALEGLYQSSPSGRFLRANSALARMCGYESSEQLL 378 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 A ++ + + ++ + + L + + + + + ++ Sbjct: 379 HA--INDIGHQIYVDEHRREQFLELAKVHDQVTDFESEIFR---RDGSRIWISESVRVVR 433 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKME 448 N E G+ + R R ++ Sbjct: 434 NSAGELARFEGVAIDITQQREAARALQ 460 >gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7] Length = 1681 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 114/585 (19%), Positives = 213/585 (36%), Gaps = 28/585 (4%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 S L + +A E + + L ++ + Sbjct: 622 DWPELQSILNKAFAQIPQDKAREIQHRWVNVQYDLGLKKQQVFNWAVRIAVAVLLVLFLF 681 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353 + + + D S G + N + L L K Sbjct: 682 SLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLK 741 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS----DRTCIAASARLHTIQWNREN 409 Y+S D + G TL+ P+ SD+ + V R D+ + + T Sbjct: 742 YQSKDQL---IGQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITT-----A 793 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + K + ++ G + + ++ +E E L ++L + G+ I Sbjct: 794 AEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWIC- 852 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 EG+ N ++++ G + + P ++ E+ E Sbjct: 853 VEGVCRYVNEQITEMTGLE----VGQSVYRIFV--QPEDYRCHIRELDLSQDSTVFETQL 906 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + + L + DI++ K +++L+ AK AE + KSDFL Sbjct: 907 FDAHGQRRDVLLTSYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFL 966 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ AI+G S ++ + +Y + ++ +L I+ND+LD SK Sbjct: 967 ANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGILNDILDFSK 1022 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 IE+ KM++ LD+ +S ++V EK + +PR D + QI Sbjct: 1023 IEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQIL 1082 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +N +NA+ F+ + +++S E + V D G+G+ + F Q+ Sbjct: 1083 INYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDA 1142 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S GTGLGL + K + G+ + S G+ + L Sbjct: 1143 STSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRLTL 1187 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 35/306 (11%), Positives = 92/306 (30%), Gaps = 22/306 (7%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YAN-PSFLLL 351 S + + + D+ ++ V + + N PS L Sbjct: 535 ESLKGKSVSVVAGDITQNHLLDDYPDIVLVPVSNLEQALTAVDKRQVDAAFVNFPSTAHL 594 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENS 410 + + ++I + + + I AR +W Sbjct: 595 LQSPPFNRLQITAATDYRFGISMGVRKDWPELQSILNKAFAQIPQDKAREIQHRWVNVQY 654 Query: 411 -----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 A+ F ++ + + ++++ + + + ++ + Sbjct: 655 DLGLKKQQVFNWAVRIAVAVLLVLFLFSLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFD 714 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSV-----MNHYL 513 + D I + +G+I+ N A+ L Y + ++ + V+ + + L Sbjct: 715 SAVDACVITDSQGVIIECNSALLSLLKYQSKDQLIGQRTLVYYPEQSDDALNQSVFERRL 774 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 +L + E + + E + + + +L S + HD+SE K L Sbjct: 775 QTVLDQGQLK-FESEFITTAAEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLER 833 Query: 574 AKKIAE 579 + + + Sbjct: 834 ERDLLK 839 Score = 41.9 bits (97), Expect = 0.46, Method: Composition-based stats. Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 26/274 (9%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241 KF L + + + I S L + K+++ Sbjct: 690 KDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLKYQSKDQLI 749 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSE------ESSLPEQEDFHTINLNQYTKKQYFGTLQ-- 293 + + + + L + +F T ++ Sbjct: 750 GQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITTAAEIIHVDVTLKRIELN 809 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + Y ++A + +L + + PI ++ G Y N +T Sbjct: 810 GSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWICVEGVCRYVNEQITEMTG 869 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 +E+ + + P+ + + D + + + + + Sbjct: 870 ------LEVGQSVYRIFVQPEDYRCH------IRELDLSQDSTVFETQLFDAHGQRRDVL 917 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + N+ + DT+ + ++ Sbjct: 918 LTSYHTVQDGQNANLCWAL---DITDTKSIQDEL 948 >gi|197118519|ref|YP_002138946.1| sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087879|gb|ACH39150.1| sensor histidine kinase, Cache, PAS, PAS, PAS and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1260 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 107/776 (13%), Positives = 230/776 (29%), Gaps = 75/776 (9%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137 + + DA G+ ++ G +++G + DV D +L Sbjct: 375 DIIPIPVYYK-DAQGHYLGCNQAFLDFNGLGREELMGKTVHDVVPPDLADKYYRSDKELF 433 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + + G I + + G G + Sbjct: 434 GVGGVQVFEAKA--VNGQLAQRDITFFKTTFPASDGSHGGILGAML--DITEHKQAEEAL 489 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------------MK 237 + + L + V ++ + S L + Sbjct: 490 QTQKEFAESLVMKSTVPTFVLDHRHRVIIWNSALEALTGIKADDVLGLENLWKIFYETER 549 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++ L A Y + + + + + +++ + Sbjct: 550 PLLADLILDEALDGLSEHYGHYRHSPLISGGIQAEGWYRDPSGAGHYITISAAPIRDRNG 609 Query: 298 ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352 L + + +D V + G + + NP+ + Sbjct: 610 VLVGALQVMEDITERKLAQDAHEKTRRQLQLILDAAGEGINGVDTQGRITFVNPAAADMV 669 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + + S + + + + + + Sbjct: 670 GWTQEELLGQNQHALMHHSREDGSPFPVQECAVAAACH-EGRPYKSEELFWRKDGTSFYV 728 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + E + I + + R+ + ++ +L + + I I + G Sbjct: 729 ECNCSPLRED--GELVGAVIIYKDMTERRLAEEQLL----KLSQAVMQSPVSIIITDTLG 782 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 I N + + GY ++++ + + T + L ++ + Sbjct: 783 NIEFVNPRFTHVTGYEADEVIGRNPRLLQSGKTSPELYQGLWNTITSG--RVWTGELNNR 840 Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 K I + S+ + M ISE K+ + +L A+K+ Sbjct: 841 YKSGATHWEHATISPIRNSAGAISHFMAFMESISERKKLEEQLRQAQKM-----EAIGQL 895 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 V+H+ LT I+GF ++++ P G+P +E I + + + LL S Sbjct: 896 AGGVAHDFNNILTVIMGFGQLLQ--HSLPAGDP-MLESMEQILDAADRATHLTRSLLAFS 952 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 + K + V L + + + + + + ++T F ++AD ++Q+ Sbjct: 953 R----KQVMLLHQVELSDLARKHAKFL-VRIIGEDVTLKTYFCEEKLMVMADSGQIEQVL 1007 Query: 709 LNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELE 754 +N+ +NA P GG++ I T ++ V DTG GM + Sbjct: 1008 MNLATNARDAMPGGGELTIKTEAVQLDEEFHRMHGYGMPGRYALITVTDTGTGMDPETQQ 1067 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +PF G GTGLGL + ++ + G IFS GT I PL Sbjct: 1068 KIFEPFFTTKLP----GRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFSIYLPL 1119 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 2/181 (1%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 T Q P + ++ + + K +++ ++ +++ Sbjct: 317 FTEQIRGMTQHKEAAQPVGVNTGDEIEVLRDAFDQLLAELEAQKSELKRQLDFSRILIDI 376 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + + +G L N+A G E+++ K + + E+ + Sbjct: 377 IPIPVYYKDAQGHYLGCNQAFLDFNGLGREELMGKTVHDVVPPDLADKYYRSDKELFGVG 436 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIA 578 Q E + ++ ++ M DI+E KQ + L K+ A Sbjct: 437 GVQVFEAKAVNGQLAQRDITFFKTTFPASDGSHGGILGAMLDITEHKQAEEALQTQKEFA 496 Query: 579 E 579 E Sbjct: 497 E 497 >gi|329848921|ref|ZP_08263949.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843984|gb|EGF93553.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 639 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 105/496 (21%), Positives = 199/496 (40%), Gaps = 32/496 (6%) Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 V+ G + N S L Y + I L PK + Sbjct: 15 LAAIVESSDDAIIGKTLDGIVTAWNASATRLFGYTPEEAIGQHIS----LIIPKDRLDEE 70 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + ++ ++ + + + I + Sbjct: 71 FVIIGKVKEGQRLEHFETVRQ---GQNGRTIDISLTVSPIKDAKGRIVGVSKIARDISIA 127 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + +R L +I++A+ D I +G+I S N + ++FGY ++ + + + Sbjct: 128 KRAERLAAS----LNAIVDASDDAIVSKTLDGVITSWNPSAVRIFGYTPDEAIGQHIGLI 183 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556 + + L +I ++ TL K+ + L + + L + Sbjct: 184 IPPDRIDEEYTILGKI--GAGQKVDHFETLRRHKDGSFVELAVTVSPLLDGRGRVMGATK 241 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 I+E KQ + L + + K +FLA +SHE+RTP+ A+IG + ++ Sbjct: 242 VARPIAEAKQTERAL-------RESNRRKDEFLANMSHELRTPMNAVIGLAHIL---GMS 291 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 NP+ + + +SG+ +L ++N+LLD S++ES + L + + V ++ ++Q Sbjct: 292 ENLNPKEQQCVAMLKQSGDNLLGLINNLLDFSRLESDALELEVLEFNPADVVENSMIMIQ 351 Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHT 732 L A EK + IR ++ NI R L D ++QI N+L+NA+ FT G + I Sbjct: 352 LKAQEKDLPIRVTYDRNIKDRYLGDPARLQQILTNLLANAVKFTDEGQIDVAVRIKAERL 411 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ + V DTG+G+ + E F Q S + G+GLGL + +A+ A G Sbjct: 412 NDTVLAFDVTDTGIGIAADKAEMIFDTFTQADASMTRKYGGSGLGLSICRALARAMNGSI 471 Query: 793 YIFSTPAKGTLIEIIF 808 + S P G+ + Sbjct: 472 SVVSRPGIGSTFTVEL 487 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150 G + + + G + IG + + ID I + +T Sbjct: 154 DGVITSWNPSAVRIFGYTPDEAIGQHIGLIIPPDRIDEEYTILGKIGAGQKVDHFETLRR 213 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ + + + ++ P+ G + + +++ Sbjct: 214 HKDGSFVELAVTVS--PLLDGRGRVMGATK--VARPIAEAKQTERALRESNRRKDEFLAN 269 Query: 211 KKGHSSV 217 Sbjct: 270 MSHELRT 276 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 21/236 (8%), Positives = 57/236 (24%), Gaps = 13/236 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150 G + + + G + IG + + +D IG + + Q + +T Sbjct: 32 DGIVTAWNASATRLFGYTPEEAIGQHISLIIPKDRLDEEFVIIGKVKEGQRLEHFETVRQ 91 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G + + + ++ PI G I + RL + + + Sbjct: 92 GQNGRTIDISLTVS--PIKDAKGRIVGVSK--IARDISIAKRAE----RLAASLNAIVDA 143 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTE--KYPLLTSEE 266 + I S + ++ D + E + + + Sbjct: 144 SDDAIVSKTLDGVITSWNPSAVRIFGYTPDEAIGQHIGLIIPPDRIDEEYTILGKIGAGQ 203 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + L + + + + + Sbjct: 204 KVDHFETLRRHKDGSFVELAVTVSPLLDGRGRVMGATKVARPIAEAKQTERALRES 259 >gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1 str. Okra] gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra] Length = 569 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 175/392 (44%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG DI+ + + L ++L E L K + Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 II K + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I IP ++ + Q+ +N++ NAI +T Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIKINI-VGEKIPLLIGNKDKYNQMIINLVDNAIKYT 476 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|294508545|ref|YP_003572604.1| two-component sensor histidine kinase [Salinibacter ruber M8] gi|294344874|emb|CBH25652.1| two-component sensor histidine kinase [Salinibacter ruber M8] Length = 959 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 135/753 (17%), Positives = 256/753 (33%), Gaps = 43/753 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYG 145 + +D G + ++ + +T G + +G + + + + ++R T G Sbjct: 225 FALDPTGQFQWWNDRVLETTGLS-DEDVG-SVDALDHFVPAEREKQAKQAIRRVLQTGSG 282 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + + VP + P+ + E + + + +++F Sbjct: 283 QVEVPLVADDGVAVPYEFVGNPVENLEGE---RQIVCVGRNVAERKRRERELRESERRFQ 339 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYP 260 + + V + L + ++ K Sbjct: 340 AMLNDPNILAGVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETENRSAVRKKV 399 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-- 318 +E + + + T + T + E + +E Sbjct: 400 ERVAEGEYMRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRREEALQ 459 Query: 319 --ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E ++ P F++ A L D GG + A Sbjct: 460 VAEGRYRALIENFPGGVFLFDEDLQYTLAGGRELRDAGLSPSDV--EGGGPHDIFPAAL- 516 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + A + + ++ + + Sbjct: 517 --AEELDMYFRRALNGEKNAFEQTM-----DGRRYF---NRTLPVRDEAGTVIAGMAVAQ 566 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILR 494 + + R K K+E + E + G + + L+ ++ G + Sbjct: 567 DITEERRRKEKLERKNDLFQRAQEIANVGGWEYDLDTGALTLTDQAYRIHGVSPGAKMTL 626 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-C 553 + N + +E + EEK + R ++ + Sbjct: 627 ERSHGLYHPNDRWEAEEAFRRAAEDGVPYDVEARLITDAGEEKWIRTRGAPQQDDGRTVR 686 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGF 606 T+ DI++ K+ + L AK AE S KS FLA +SHEIRTPLT+IIGF Sbjct: 687 VRGTIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPLTSIIGF 746 Query: 607 SEVIKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E+I ++ L + YA I+RSG +L+ + +L++SK++SG+M L PV L+ Sbjct: 747 AELIGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLETAPVDLN 806 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E + A+ ++ A EK + R D ++ + N++SNAI +T GG I Sbjct: 807 EQIRWAVQELRPKAEEKGV--RLQLETGCAVAEGDEGGIQIVIRNLVSNAIKYTEQGGHI 864 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + + + + +L V DTG+GM E +PF Q EGTG+GL + V Sbjct: 865 WVR-SFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAVTNKAV 923 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 G + + +GT I P + HP D Sbjct: 924 AQMDGSIEVDTEKDEGTRFTIQLPASE-EHPTD 955 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 19/166 (11%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLC-------SILE 459 A+ P G+ V R++E + +L +L Sbjct: 159 AVQLSPLVLCGGMAMVAFVVGVVARWVLRVRRHLADQARELEEQRDRLEGHRAYTNRLLN 218 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILS 518 AT D ++ G N V + G ED+ F+ + +L Sbjct: 219 ATDDLFFALDPTGQFQWWNDRVLETTGLSDEDVGSVDALDHFVPAEREKQAKQAIRRVLQ 278 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDI 561 Q + + + L ++ Sbjct: 279 TGSGQV---EVPLVADDGVAVPYEFVGNPVENLEGERQIVCVGRNV 321 >gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061] gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061] Length = 593 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 151/364 (41%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E L +IL + +DG+ IN +G IL TN + + + Sbjct: 247 ALNQEKEHLSNILSSMADGVITINIDGTILMTNPPAERFL---QAWYYEQNMKIKDGDEL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G T + L + + D++E + Sbjct: 304 PPEARELFHTAVSTEKEQMIEVTLQGRT----WVLLMSPLYNQQDVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + G E Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAG--SEEEKKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L+ E +E + A EK++ Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVD 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + P + D ++Q+ N++ NAI TP GG++ S + + + V+D+G Sbjct: 464 LTYDIQVDEPYFVLDPDKIEQVFTNLIDNAIRHTPEGGEVHFSVQSVESG-LKMDVKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S GT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 927 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 178/379 (46%), Gaps = 15/379 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L + E D I I++++G + N++ S L G +EDI K Sbjct: 256 KRELIRSEKEKAKLALVAEYAHDAIFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSI 315 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ + + + SL+ ++ K+ L + + I + + Y Sbjct: 316 LQ-LDKIKHANIIILLQSLETGTSISFELTNHHKDGTLFWIDVSITPILEPNGNIMHYIA 374 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 375 VERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESN--- 431 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + SG+ +L ++N++LD SKIE K+ L+ + + + Sbjct: 432 -IKDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYL 490 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K + N + + D ++QI N++SNA+ FT G I ++ +HT Sbjct: 491 SVCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHEGS-ITLNFSHTLTG 549 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V ++++DTGVG+ L+ +P+ Q S + GTGLGL + K + D G Sbjct: 550 KGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGY 609 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S+ KG+ ++ PL Sbjct: 610 ISVSSSEGKGSCFTLVLPL 628 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143 + +D G L I++ GN + G L + + I N I L+ + Sbjct: 280 IFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSILQLDKIKHANIIILLQSLETGTSI 339 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +GT ID++ PI N + + + + K Sbjct: 340 SFELTNHHKDGTLF--WIDVSITPILEPNGNIMHY--IAVERDITKKKELEDKLIKAANK 395 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 396 ADVSNRAKSTFLATMSHELRTP 417 >gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114] gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri] gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114] Length = 927 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 178/379 (46%), Gaps = 15/379 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L + E D I I++++G + N++ S L G +EDI K Sbjct: 256 KRELIRSEKEKAKLALVAEYAHDAIFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSI 315 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ + + + SL+ ++ K+ L + + I + + Y Sbjct: 316 LQ-LDKIKHANIIILLQSLETGTSISFELTNHHKDGTLFWIDVSITPILEPNGNIMHYIA 374 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 375 VERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESN--- 431 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + SG+ +L ++N++LD SKIE K+ L+ + + + Sbjct: 432 -IKDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYL 490 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 K + N + + D ++QI N++SNA+ FT G I ++ +HT Sbjct: 491 SVCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHEGS-ITLNFSHTLTG 549 Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V ++++DTGVG+ L+ +P+ Q S + GTGLGL + K + D G Sbjct: 550 KGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGY 609 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S+ KG+ ++ PL Sbjct: 610 ISVSSSEGKGSCFTLVLPL 628 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143 + +D G L I++ GN + G L + + I N I L+ + Sbjct: 280 IFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSILQLDKIKHANIIILLQSLETGTSI 339 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +GT ID++ PI N + + + + K Sbjct: 340 SFELTNHHKDGTLF--WIDVSITPILEPNGNIMHY--IAVERDITKKKELEDKLIKAANK 395 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 396 ADVSNRAKSTFLATMSHELRTP 417 >gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus turgidum DSM 6724] Length = 815 Score = 340 bits (873), Expect = 5e-91, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 165/371 (44%), Gaps = 38/371 (10%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--------ILRKPFTVFL 501 E ++ ILE DG+ I++ + N S++F + + + + Sbjct: 342 EREKMKKILENVGDGLVILDGRKRLSMFNNVASEIFQLSFGQAGKRCTEVLKCRNLSGEI 401 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTM 558 + + + ++ E++++ L + + + L + Sbjct: 402 MCSECPLDKMVFQGL------SLMQYEMKVWNGEKEIILGCNLSGTW-EGRKVTNFILAL 454 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS +A++ KS+F+A VSHE++TPLTAI G+SE++ P Sbjct: 455 RDIS--------------LAKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP- 499 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R Y I + + +VNDLL++S+IESG++ L + V + + + E + Q Sbjct: 500 --ERVRNYYQIIYKESERLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTR 557 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 ++ I F +L D + Q+ N+L NAI ++P+GG + + E+++ Sbjct: 558 TSKH--TIVLQFPEYPTFVLGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVA-DKMEDIL 614 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+D GVG+ L F ++ +S + GTGLGL + K++V+A+ GK S Sbjct: 615 IEVQDQGVGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKV 674 Query: 799 AKGTLIEIIFP 809 +GT I P Sbjct: 675 GEGTTFTIRLP 685 >gi|331268507|ref|YP_004394999.1| sensory transduction histidine kinase [Clostridium botulinum BKT015925] gi|329125057|gb|AEB75002.1| sensory transduction histidine kinase [Clostridium botulinum BKT015925] Length = 554 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 98/508 (19%), Positives = 201/508 (39%), Gaps = 21/508 (4%) Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKL 375 E E + P F + +AN + L DI + K+ Sbjct: 17 EDEEFYRNLIKILPDAVFFEKDKKIIFANDEGIKLLDGIEKKDIIGKEVEEFIHSNFIKI 76 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D N K + +S + I + + N+ E + I Sbjct: 77 LDLNKEKNLNSVKSHNE----NIIEQKIVTLNNKIIDVEVKSIYLFNKNREQIKVV-IVR 131 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILR 494 + + + ++ + + + G+ I + + I+ N+ + G +D+L Sbjct: 132 DITERKRYEKALRDSEYLHRKLTQMLPVGVFIHDYD-IVEFANKTCLNILGIKDEKDLLN 190 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 K F+ + L I + E + +++ + + Sbjct: 191 KSIFKFIHKGKIRDSKQRLKTIFEYGEKTLPEFYNKVVRQNGEIIDVETWSTTFYDENKL 250 Query: 554 -YSLTMHDISE------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG- 605 D++E KQ+ N+ + + +++F A +SHE++TPL I+ Sbjct: 251 KILSVFRDVTEYLEIENIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSS 310 Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 + ++N F + + ++ + ++ N +L ++++L+DI++I+SG +L+ + Sbjct: 311 QQLLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLQNH 370 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 ++ + + V Y K I + L D +++I LN+LSNA+ FTP G Sbjct: 371 NIVTIIEDITLSVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKG 430 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G+I ++ H + + + VRD G+G+ ++ F Q+ S EG+G+GL L K Sbjct: 431 GRIKVNI-HDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDTSFTRISEGSGIGLSLVK 489 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 A+V+ + G + S +G+ I FP+ Sbjct: 490 ALVEMHNGTISVESEYGEGSEFIIYFPI 517 Score = 43.5 bits (101), Expect = 0.15, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 43/171 (25%), Gaps = 13/171 (7%) Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352 + + E L + P+ F++ + + +AN + L + Sbjct: 121 NREQIKVVIVRDITERKRYEKALRDSEYLHRKLTQMLPVGVFIHDYDIVEFANKTCLNIL 180 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-------------LYRSDRTCIAASAR 399 K D+ + +K + + R + I Sbjct: 181 GIKDEKDLLNKSIFKFIHKGKIRDSKQRLKTIFEYGEKTLPEFYNKVVRQNGEIIDVETW 240 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 T + + F + + ++ + +D K+ E Sbjct: 241 STTFYDENKLKILSVFRDVTEYLEIENIKQKSNENKKLLDKEREFNKIRTE 291 >gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium sp. 4-46] Length = 764 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 120/672 (17%), Positives = 240/672 (35%), Gaps = 56/672 (8%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLT 244 AL + E+ V + P L + + +T Sbjct: 92 LDGAVPAGALIPGREIHLIGPDEVITASLPVPLPPGRSLGEHLGEAQPLLILGERAGLMT 151 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEY 302 + P + + + + + Y Sbjct: 152 VGLRGAPALATLRALPGGQQRVAVVQSLDTVTAAWQGRARTEAMVIGTATLVIVCIGLAY 211 Query: 303 LSHRNHPSLSAYF-DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD 359 + ++ + + + + G + Y + S L Y + Sbjct: 212 TLQADRARAVDRVCEQVRQRLDTALCRGRCGLWDWDIARGRI-YWSDSMYQLLGYTREHE 270 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 G ++ L+ + + I+ + + Sbjct: 271 FLSFGDVNALVHPDDTDLYGLASQLAAQDATVD------HEFRIRSAAGEWIWLKARAEI 324 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 +Q GI + + R M+L +EA S+ + + + ++ N Sbjct: 325 VRDQEDGGRHLVGIAIDISEQRRLAESTATADMRLRDAVEAVSEAFVLWDAQNRLVLCNS 384 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +L ED +P + + + EI + + +T + + + L Sbjct: 385 KFRRLHALTPEDA--QPGRRYDTIMGRAAVPPVRREIQAGEFAETGARTFEAELADGRWL 442 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------------- 580 + ++ Y DI+ K+ + +L +++ Sbjct: 443 QIS---ERRTKDGGYVSVGTDITALKRHQERLVESERQLIATIADLKRSRRTLELQTQQL 499 Query: 581 ----------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 + KS+FLA +SHE+RTPL AI+GF+EV++++ FG LG +Y Sbjct: 500 ADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGCEKYR 559 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I SG +L +++D+LD+S+IE+ ++ L +P+ + E + + +V A K + Sbjct: 560 EYCRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAARAKGL 619 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + +LAD R++ QI LN+L NA+ FTP G++ + T + V + V D+ Sbjct: 620 TLSVEMNADA-VVLADARALHQILLNLLQNAVKFTPDAGRVAVRTRRALDA-VHIYVEDS 677 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ L K PF Q+ ++ +G+GLGL +A+++ + + G+ I S GT++ Sbjct: 678 GIGIPRTVLPKLGAPFEQVESNLSRSFKGSGLGLAIARSLTELHGGRLRIRSEVGSGTIV 737 Query: 805 EIIFPLYDTSHP 816 + P P Sbjct: 738 LVRLPQPPGDAP 749 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 55/248 (22%), Gaps = 10/248 (4%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 W+ D A G + S+ + + +G + DV+ ++H D + + L Q+ Sbjct: 243 LWDWDIARGRI-YWSDSMYQLLGYTREHEF-LSFGDVNALVHPDDTDLYGLASQLAAQDA 300 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 ++ + A + + G I D Sbjct: 301 TVDHEFRIRSAA-GEWIWLKARAEIVRDQEDGGRHLVGIAI--DISEQRRLAESTATADM 357 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + E + + + S H Y Sbjct: 358 RLRDAVEAVSEAFVLWDAQNRLVLCNSKFRRLHALTPEDAQPGRRYDTIMGRAAVPPVRR 417 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + E + F + + ++ S + Sbjct: 418 EIQAGEFAETGARTFEAELADGRWLQISERRTKDGGYVSVGTDITALKRHQERLVESERQ 477 Query: 321 LTPETVDK 328 L D Sbjct: 478 LIATIADL 485 >gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4] Length = 1681 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 114/585 (19%), Positives = 214/585 (36%), Gaps = 28/585 (4%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 S L + +A E + + L ++ + Sbjct: 622 DWPELQSILNKAFAQIPQDKAREIQHRWVNVQYDLGLKKQQVFNWAVRIAVAVLLVLFLF 681 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353 + + + D S G + N + L L K Sbjct: 682 SLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLK 741 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS----DRTCIAASARLHTIQWNREN 409 Y+S D + G TL+ P+ SD+ + V R D+ + + T Sbjct: 742 YQSKDQL---IGQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITT-----A 793 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + K + ++ G + + ++ +E E L ++L + G+ I Sbjct: 794 AEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWIC- 852 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 EG+ N ++++ G + + P ++ E+ E Sbjct: 853 VEGVCRYVNEQITEMTGLE----VGQSVYRIFV--QPEDYRCHIRELDLSQDSTVFETQL 906 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + + L + DI++ K +++L+ AK AE + KSDFL Sbjct: 907 FDAHGQRRDVLLTSYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFL 966 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ AI+G S ++ + +Y + ++ +L I+ND+LD SK Sbjct: 967 ANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGILNDILDFSK 1022 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708 IE+ KM++ LD+ +S ++V EK + +PR D + QI Sbjct: 1023 IEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQIL 1082 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +N +NA+ F+ + +++S E + V D G+G+ + + F Q+ Sbjct: 1083 INYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPDQKQGVLFGSFEQVDA 1142 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 S GTGLGL + K + G+ + S G+ + L Sbjct: 1143 STSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRLTL 1187 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 35/306 (11%), Positives = 92/306 (30%), Gaps = 22/306 (7%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YAN-PSFLLL 351 S + + + D+ ++ V + + N PS L Sbjct: 535 ESLKGKSVSVVAGDITQNHLLDDYPDIVLVPVSNLEQALTAVDKRQVDAAFVNFPSTAHL 594 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENS 410 + + ++I + + + I AR +W Sbjct: 595 LQSPPFNRLQITAATDYRFGISMGVRKDWPELQSILNKAFAQIPQDKAREIQHRWVNVQY 654 Query: 411 -----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 A+ F ++ + + ++++ + + + ++ + Sbjct: 655 DLGLKKQQVFNWAVRIAVAVLLVLFLFSLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFD 714 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSV-----MNHYL 513 + D I + +G+I+ N A+ L Y + ++ + V+ + + L Sbjct: 715 SAVDACVITDSQGVIIECNSALLSLLKYQSKDQLIGQRTLVYYPEQSDDALNQSVFERRL 774 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 +L + E + + E + + + +L S + HD+SE K L Sbjct: 775 QTVLDQGQLK-FESEFITTAAEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLER 833 Query: 574 AKKIAE 579 + + + Sbjct: 834 ERDLLK 839 Score = 42.3 bits (98), Expect = 0.38, Method: Composition-based stats. Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 26/274 (9%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241 KF L + + + I S L + K+++ Sbjct: 690 KDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLKYQSKDQLI 749 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSE------ESSLPEQEDFHTINLNQYTKKQYFGTLQ-- 293 + + + + L + +F T ++ Sbjct: 750 GQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITTAAEIIHVDVTLKRIELN 809 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + Y ++A + +L + + PI ++ G Y N +T Sbjct: 810 GSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWICVEGVCRYVNEQITEMTG 869 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 +E+ + + P+ + + D + + + + + Sbjct: 870 ------LEVGQSVYRIFVQPEDYRCH------IRELDLSQDSTVFETQLFDAHGQRRDVL 917 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + N+ + DT+ + ++ Sbjct: 918 LTSYHTVQDGQNANLCWAL---DITDTKSIQDEL 948 >gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum Bf] gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum Bf] gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657] Length = 569 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 174/392 (44%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG DI+ + + L ++L E L K + Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 II K + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A K I I +P ++ + Q+ +N++ NAI +T Sbjct: 418 EKIDLNELIEKVYCLVKKSAENKNIKINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 1691 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 169/395 (42%), Gaps = 17/395 (4%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 E + ++ ++ V + ++L+ D I +++G +LS N A +LF Sbjct: 237 EPEELISRVYQMAESVERYGELNQMVARHKAVLDNAQDAIITTDQQGDVLSYNPAAERLF 296 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKLLSL 541 GYP ++++ T L + + + +G + +L+ L Sbjct: 297 GYPRQNVMGVSLTERLIPESLQNKQAPSLTNAMHGALEMVPNKGRLEAIGKRIDGELIDL 356 Query: 542 RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++ + +P Y+ + DI++ KQ L AE S KS F+A +SHEIRT Sbjct: 357 QVALSAMPQQGGELHYTAFIQDITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRT 416 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ A++GF+++ P + +Y + + ++ I+ND+LD SK++ G++ L Sbjct: 417 PMNAVLGFTDLALRGDLSP----KVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELD 472 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717 L + L A + + + N ++ D ++QI +N++ NA+ Sbjct: 473 PVKFDLHFLLERLADLFSKQAADHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVK 532 Query: 718 FTPSGGQIIISTTHT--SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 FT G I + V L V D+G+G+ +L PF Q +S R G Sbjct: 533 FT-KNGFITVRAQPELLEGHRVRLTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGG 591 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 TGLGL + K +V G + S P KG+ Sbjct: 592 TGLGLSIVKRLVSLMDGSVWAESEPGKGSQFHFEI 626 Score = 296 bits (759), Expect = 8e-78, Method: Composition-based stats. Identities = 130/724 (17%), Positives = 242/724 (33%), Gaps = 68/724 (9%) Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRV 189 ++ Q W L GT +DL L GF+GF + R+ Sbjct: 863 EAMQRIRAQEAWRSLPVLALSTGTGEEEQLDLQDL----------GFQGFLHKPIRPERL 912 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------K 237 + R S + + + + + Sbjct: 913 YGALKRWITRPTLDASWRIVARGDEVPLLRGVDPEIGINRLAGNQELYVVLLSRFFQLYA 972 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + S+ + + + L + ++L E + + + + Sbjct: 973 EVLPSMQQQLQRGQWAVLGRQIHGLRNRAAALGAVELAKAVVALELAMADGHEAMIEAAF 1032 Query: 298 ESF--EYLSHRNHPSLSAYFDEGENLTPETV-DKCPI---------PFFVYSHGNLFYAN 345 +SF + +G L+ + D P P G L Y + Sbjct: 1033 QSFSHRLEQVLQGIASHQVEQKGVALSSNLLHDDLPELVVDLHQVGPLLDQLAGRLKYHS 1092 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 L + + + L A + + A A + I Sbjct: 1093 IDAAAL-----LQALGELLKETPLATAYWTVCKQVDRYNFYEALQSFLLIAKALKYPIID 1147 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 A + P+N+ + ++ + + + + D + Sbjct: 1148 QNVRCPASVKERILIVDDQPDNVDVL---KDILEDYERMAALSGPEALMLAQCDPAPD-M 1203 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +++ + ++ GY V L+ + + L + Sbjct: 1204 VLLDI---------MMPEMNGYEVCRRLKAMEATQEIPVIFVSAKKEVVDEAEGFLIGGV 1254 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-EWKQEKNKLSHAKKIAEKESSH 584 + IT E + ++ + + E + + K AE + Sbjct: 1255 DYITKPYHGEVVRRRIHSQLELKRHRERLEKQVRMRTAELELATREAELRKDEAEAGNRA 1314 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS+FLA +SHEIRTPL AI+G E++ +G L+L++VN+ Sbjct: 1315 KSEFLAIMSHEIRTPLNAILGTHELLSESALSS----EQQRLMEISRNAGELLLNLVNET 1370 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD++KIE+GK++L + L V E + ++ A K + + + A +PR ++ D Sbjct: 1371 LDLAKIEAGKLDLEYTIFDLPRLVEEITQIKRVAAEHKGVRLESEMALEVPRFVMGDPDR 1430 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI +N+LSNAI FT SG + + + + +V DTGVG+ + +EK PF Q Sbjct: 1431 LRQILVNLLSNAIKFTNSG-TVSLQMSRGVADRTFFKVSDTGVGIAAHSMEKIFHPFTQA 1489 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-------DTSHP 816 S + GTGLGL + K + +A G + S G+ + PL + S P Sbjct: 1490 DTSTTRKFGGTGLGLTICKHLCEAMGGDIQVESQVGVGSTFSVNLPLPRAESSMDEPSAP 1549 Query: 817 HDCI 820 + I Sbjct: 1550 EEVI 1553 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 38/147 (25%), Gaps = 12/147 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKR-----QN 141 D G + + + G ++G+ L + + + + + N Sbjct: 279 TDQQGDVLSYNPAAERLFGYPRQNVMGVSLTERLIPESLQNKQAPSLTNAMHGALEMVPN 338 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + I+G + + + L+A+P ++ F + + Sbjct: 339 KGRLEAIGKRIDGELIDLQVALSAMPQQGGELHYTAF-----IQDITDKKQLLKSLEETL 393 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 394 SAAESASKAKSAFIANMSHEIRTPMNA 420 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 24/238 (10%), Positives = 52/238 (21%), Gaps = 4/238 (1%) Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + Q P L + + A + + S Q Sbjct: 157 QVRLAQDGAEAWALLQETPVDLVVTDYEMPNLNGVALTAKLRSRYSRDEMGIMGLSSAGQ 216 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + ++ + Y + ++ +D Sbjct: 217 SEL-AVDFIKAGANDYINKPYEPEELISRVYQMAESVERYGELNQMVARHKAVLDNAQDA 275 Query: 333 FFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 G++ NP+ L Y + + L+ L L + A Sbjct: 276 IITTDQQGDVLSYNPAAERLFGYPRQNVMG--VSLTERLIPESLQNKQAPSLTNAMHGAL 333 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + RL I + L + Q + + D + + +E Sbjct: 334 EMVPNKGRLEAIGKRIDGELIDLQVALSAMPQQGGELHYTAFIQDITDKKQLLKSLEE 391 >gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus megaterium QM B1551] Length = 1012 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 110/408 (26%), Positives = 200/408 (49%), Gaps = 21/408 (5%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 E G + D + K+ S+L S+G+ + EG +++ N +K+ Sbjct: 471 GEVKEVIGSIVDVTDLHEAREKLAKSESMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKI 530 Query: 485 FGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLL 539 P + IL + + + + L ++ + +G E+KL Sbjct: 531 LNVPYDQILSVNPFGLDWEIIHPDGTPFALEDIPSVRCLRTKEPVRNTVMGIYLNEKKLT 590 Query: 540 SLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFL 589 L + + L S +T +DI++ ++++ L H+ K+ AEK + KS+FL Sbjct: 591 WLSVNAEPLQESKYYKGVVVTFYDITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEFL 650 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 ++VSHE+RTPL +I+G+++ I ++ + + I ++GN +L ++N+ LD+SK Sbjct: 651 SKVSHELRTPLNSILGYAQ-ILEEQGEKDLTEKQLNRIRKILKAGNHLLYLINETLDLSK 709 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708 IESG + ++ EPVS+ EA+ +A+ +++ A +K ++ T F + D +QI Sbjct: 710 IESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHAYQEVFVEVDELRFQQIL 769 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 LN+L+NAI ++P+ I I T T + V + + D G G+ EL + +PF +I + Sbjct: 770 LNLLTNAIKYSPAYRDITIYTEITQH-HVTILIEDRGFGIPASELNRIFEPFYRI---NR 825 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + +GTG+GL L K +V G + S KG+ + FPL P Sbjct: 826 LEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFPLVHPPVP 873 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 8/162 (4%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + R +++ S+ + + ++ G I + N +L GY Sbjct: 230 LLIVFLLVAAFKRQEEVRDSQLKEEYYQSLFNYNPNIVCAVDLYGNIQTINPKGIELTGY 289 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + + + PF + Y+ + LS D ++ K+ + + + + Sbjct: 290 TLHQMEKIPFPYMFRE--AEKAEEYMWKSLSGD---SVYYEATLIRKDNQPVYVEVTQMP 344 Query: 548 L---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + D+++ K+ + +L ++ ++ S + Sbjct: 345 IIVHGQIKGSYVIAKDVTDRKKAQQQLLDLQEDLKRTLSQQD 386 Score = 62.7 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 46/342 (13%), Positives = 101/342 (29%), Gaps = 24/342 (7%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340 Q ++ F ++ E + P GN Sbjct: 216 QAPFSNMIASITITLLIVFLLVAAFKRQEEVRDSQLKEEYYQSLFNYNPNIVCAVDLYGN 275 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + NP + LT Y + + + + M + A L Sbjct: 276 IQTINPKGIELTGYT-------LHQMEKIPFPYMFREAEKAEEYMWKSLSGDSVYYEATL 328 Query: 401 HTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 I+ + + +T +P + I + D + ++++ L L Sbjct: 329 --IRKDNQPVYVEVTQMPIIV---HGQIKGSYVIAKDVTDRKKAQQQLLDLQEDLKRTLS 383 Query: 460 ATSDGI--AIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I + N EG I + + GY D++ K FL ++ Y + Sbjct: 384 QQDGAIFKFVKNDEGYIHTMCEGKMIREMGYEEIDVVGKTLEEFLPESYAKENKRYYEKA 443 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + L + + + I ++ D+++ + + KL+ ++ Sbjct: 444 WAGEKVS---YEVLLN--DFAYYTKLIPHIYKGEVKEVIGSIVDVTDLHEAREKLAKSES 498 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 + S S+ V H++ L A ++ I N + + Sbjct: 499 MYRSVLSTMSE--GVVFHDLEGNLIAANAYAAKILNVPYDQI 538 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 35/377 (9%), Positives = 98/377 (25%), Gaps = 25/377 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145 +D +G ++ I+ + + G ++ + + + ++ Y Sbjct: 270 VDLYGNIQTINPKGIELTGYTL-----HQMEKIPFPYMFREAEKAEEYMWKSLSGDSVYY 324 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + TL + V +++ +PI + + G + I + L + Sbjct: 325 EATLIRKDN--QPVYVEVTQMPI-IVHGQIKG--SYVIAKDVTDRKKAQQQLLDLQEDLK 379 Query: 206 HLHEIKKGHSS---VEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + G E Y + + V E + + + ++Y Sbjct: 380 RTLSQQDGAIFKFVKNDEGYIHTMCEGKMIREMGYEEIDVVGKTLEEFLPESYAKENKRY 439 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + + + + + E Sbjct: 440 YEKAWAGEKVSYEVLLNDFAYYTKLIPHIYKG--EVKEVIGSIVDVTDLHEAREKLAKSE 497 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377 ++ + + GNL AN + + GL + P + Sbjct: 498 SMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKILNVPYDQILSVNPFGLDWEIIHPDGTP 557 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A++ + R RT + I N + ++ + + Sbjct: 558 -FALEDIPSVRCLRTKEPVRNTVMGIYLNEKKLTWLSVNAEPL-QESKYYKGVVVTFYDI 615 Query: 438 VDTRINKRKMEIEVMQL 454 + ++ + Q+ Sbjct: 616 TKQQEQEQDLLHSNQQM 632 >gi|221233560|ref|YP_002515996.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|220962732|gb|ACL94088.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 735 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 109/583 (18%), Positives = 223/583 (38%), Gaps = 36/583 (6%) Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 L E L+ S +++ ++ + + E L+ Sbjct: 24 RRRLGVEALELIRRGTSQNALLGKGFAVDVGASGSDLCLWASGSDGEAARELLTELASLV 83 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + D +++ P + G L +P++ + + Sbjct: 84 VELVADASPF---AMLEQAPDDLISHYDLTGRLLRVSPAWSRIIGGSVAEAAGRRTWD-- 138 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 AP+ A L R + ++ R+ ++ + + P N Sbjct: 139 -FIAPEDHPAVAAYYADLLR-EGAAPSSRLRM-RVRHVAGDIRVLESRPMPIRNAEGVVT 195 Query: 429 PQNGIEPEDVDT--------------RINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 I + + + + E +L + E+ D ++ G I Sbjct: 196 GFVDIARDITEQIETERRYQLALAQAHEARERAEASEWRLRLLAESAQDLTVQVDASGKI 255 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGS 532 L + + +L G F + + ++ D R +L+ Sbjct: 256 LYASSSADRL-GLANLAQEGASFMSLVHPDETERAATFIAGAFESRGDKRPSLDTELRFL 314 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + + + + T D+++ + L A+ AE KS F Sbjct: 315 SVDGDYRWMEGKGWLERDADGVPVALTSTFRDMTDRHSLEESLIAARVRAEAAVRAKSAF 374 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA ++HE+RTPLT++IGF+E I+ + P +P ++ I G +L +ND+LD S Sbjct: 375 LANMTHELRTPLTSVIGFAEQIQAE---PALSPTVRHASDRISAGGRALLSTINDILDFS 431 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQI 707 K+ESG +++ ++ ++E ++L+ + A+ K + + + + A D + V+Q+ Sbjct: 432 KLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQHVRQV 491 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 LN++ NAI FT GG + ++ + + + V DTG+G+ LE+ F Q+ ++ Sbjct: 492 LLNLIGNAIKFTEQGG-VTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFSQVDDTI 550 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R G+GLGL + + + +A G+ + ST +G+ + PL Sbjct: 551 ARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 593 Score = 64.7 bits (156), Expect = 6e-08, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 24/252 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148 D G L +S + IG + G R D + DLL+ + Sbjct: 108 DLTGRLLRVSPAWSRIIGGSVAEAAGRRTWDFIAPEDHPAVAAYYADLLREGAAPSSRLR 167 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------------NDPR 194 + ++ +PI + +GF I ++ R Sbjct: 168 MRVRHVAGDIRVLESRPMPIRNAEGVVTGF--VDIARDITEQIETERRYQLALAQAHEAR 225 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-------SSLTEYY 247 + + + L E + + I S L + N S + Sbjct: 226 ERAEASEWRLRLLAESAQDLTVQVDASGKILYASSSADRLGLANLAQEGASFMSLVHPDE 285 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + + SL + F +++ + + ++ S Sbjct: 286 TERAATFIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTSTFR 345 Query: 308 HPSLSAYFDEGE 319 + +E Sbjct: 346 DMTDRHSLEESL 357 >gi|120601381|ref|YP_965781.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561610|gb|ABM27354.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 955 Score = 340 bits (872), Expect = 5e-91, Method: Composition-based stats. Identities = 116/771 (15%), Positives = 237/771 (30%), Gaps = 63/771 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + +D+ G + +++ + A ++G L V +H + Sbjct: 40 FTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHA---PLVARAAADILAGTCD 96 Query: 147 TTLWPIEGTNL---------YVPIDLAALPI----------YSRNREFSGFRGFGIV--- 184 L P+ G +D P+ + F + Sbjct: 97 DLLLPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYAELFHLCPVP 156 Query: 185 ---HVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + E + + I L + Sbjct: 157 LWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANETASGLFAGCRE 216 Query: 241 SSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 L + + + E +L S L + ++ + + + Sbjct: 217 DLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIEARLMPGFGLT 276 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTK 353 ++ + V+ +++ +AN + Sbjct: 277 GMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIFANRAIRENLL 336 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410 + + + G + + L + + + + Sbjct: 337 HSDDE--RVLGRTDLHFAERQRRLGHEHTFGELCIDSDRVVLQTRTSGRFREDGKVQGRY 394 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 L + ++ + + G + + + + L +EA++D I + Sbjct: 395 LMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEASTDTIWQYDV 454 Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 L N L + + ++ H L + Sbjct: 455 VHDRFL-CNNRCPGLLALSDAEDEC-HCRHRADPADAELLLHNLRN--GQGGDKGFSMEL 510 Query: 530 LGSTKEEKLLSLRII--IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH 584 E + + + +L + DI+E K+ + +L A+ AE + Sbjct: 511 RLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITERKRFETELRQARDDAEAANKA 570 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLA +SHEIRTPL ++G +++++ E + +S +L ++ND+ Sbjct: 571 KSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS----DQQELLHVASQSSRNLLTVINDI 626 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703 LD +++ S + +P A+ + A +K I I T + N+P +L D+ Sbjct: 627 LDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPLLIGDVTR 686 Query: 704 VKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI--LRVRDTGVGMTNYELEKAM 757 +QI N++ NA+ FT G + IS H+ + L V D+G+G+ L Sbjct: 687 FRQILFNLVGNAVKFTQQG-TVRISLHGLERHSPAGALRMLLMVEDSGIGIPQDMLGNVF 745 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF Q+ S + R GTGLGL + +++V G I S GT I Sbjct: 746 EPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 796 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 39/372 (10%), Positives = 93/372 (25%), Gaps = 31/372 (8%) Query: 86 TWNIDAHGYLKEISEELPK-TIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGD 135 W D + + + + + +++G + + Sbjct: 315 LWAKDTECRYIFANRAIRENLLHSDDERVLGRTDLHFAERQRRLGHEHTFGELCIDSDRV 374 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 +L+ + + + ++G L + + + P+Y R + G G G + Sbjct: 375 VLQTRTSGRFREDG-KVQGRYLMLDVQKS--PLYDRQGKLLGTVGTG--RDITLLKAQED 429 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDD 252 R + E +D F + P L + D Sbjct: 430 ALLRSQQLLKWTVEASTDTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADA 489 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSL 311 L + + + ++ + + + Sbjct: 490 ELLLHNLRNGQGGDKGFSMELRLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITE 549 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 F+ + + ++F AN S + T + G+ LL+ Sbjct: 550 RKRFETELRQARDDAEAANKA------KSIFLANMSHEIRTP------LNGVLGMLQLLE 597 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L+ + + +S R + + + + PF+ A Sbjct: 598 DAPLTSDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTL 657 Query: 432 GIEPEDVDTRIN 443 +D D RI Sbjct: 658 ATGAKDKDIRIE 669 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 16/154 (10%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L A ++ +G+++ N L P D+L KP +V + ++ +I Sbjct: 31 VLSAIRIPAFTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHAPLVARAAADI 90 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLSH- 573 L+ L S + L +R + + + ++ L + Sbjct: 91 LAGTCDDLL---LPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYA 147 Query: 574 ----------AKKIAEKESSHKSDFLARVSHEIR 597 ++ + H++R Sbjct: 148 ELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLR 181 >gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106] gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106] Length = 1361 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 83/405 (20%), Positives = 166/405 (40%), Gaps = 41/405 (10%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLF--GYPVE---DILRKPFT 498 ++ +L LE+ G+ + + + ++ N+ LF G + + + + Sbjct: 438 ERLSQSETRLYQFLESLPVGVLVYDGVQDKLMFMNQTAQALFRKGIIPDTSLETFSQTYQ 497 Query: 499 VFLEQNTP--SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 ++L L L ++ +++ ++ + + Sbjct: 498 LYLAGTDKIYPAKALPLIRALKGKSLKSENIEIRHRD---QVIPCEVLAQPIYDCDHNII 554 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIG 605 + DI++ KQ + + + + ++ K +FLA SHE+RTPL +IG Sbjct: 555 YAVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLDKLKDEFLANTSHELRTPLNGMIG 614 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +E + G L + I SG+ + +VND+LD SK+ + L +P L Sbjct: 615 IAESMLEGATGTLS-ELQRKNLIMIAHSGHRLSTLVNDILDFSKLRHNTIRLQVKPTGLR 673 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E ++L Q K + + + ++P + AD ++QI N++ NA+ FT G I Sbjct: 674 EITEIVLTLNQSLVRNKDLQLINDISPDLPLVKADENRLQQILHNLVGNAVKFTERGS-I 732 Query: 726 IISTTH-----------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +S +N ++ + V DTG+G+ ++ + + F Q S Sbjct: 733 TVSAQVISWDENSDNHQPKVDQKATNSQIAVTVSDTGIGIPANKINRIFESFEQADGSTA 792 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + GTGLGL + K +V+ + GK ++ S G+ P+++ Sbjct: 793 RQFSGTGLGLAVTKQLVELHGGKIWVESIENVGSNFIFTLPIFEE 837 >gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 708 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 176/437 (40%), Gaps = 27/437 (6%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + A L Q + E + + AN+ ++ E + + + Sbjct: 140 GERLKVEAELRKYQNHLEELVNIRTNEITNANEK--------LQQEIHERQRIVEILRES 191 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + + EA + + G N+ G +E+ L + L Sbjct: 192 EERYRYLAEAIPQLVWTADANGECDYFNQNWCDYTGLTLEESLGSGWLAALHLEDLERSY 251 Query: 511 HYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 ++ + E + L L + T DI E K Sbjct: 252 ETWSKAVETGT--LYENEYRFKRAADGSYRWLLGRGLPLKDHQGRVVKWFGTCTDIHEQK 309 Query: 566 QEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q + A+ AE + K +FLA +SHE+RTPL AI+G+S++++ ++ P Sbjct: 310 QILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLEP- 368 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + I+R+ L + ++ DLLDIS+I GK+ ++ V+L + A+ ++L Sbjct: 369 --ARTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVIVILTALETMRLA 426 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I + T+F + + +++ D ++Q+ N+LSNA+ FTP GG+I +S Sbjct: 427 AESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSLEKVD-GYAQ 485 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797 + V DTG G+ L F Q +S R G GLGL + + +V+ + G S Sbjct: 486 IVVSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLG 545 Query: 798 PAKGTLIEIIFPLYDTS 814 +G + P+ Sbjct: 546 EEQGASFTVRLPILPEE 562 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 3/168 (1%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE + + + W DA+G ++ G + +G + ++ Sbjct: 190 ESEERYRYLAEAIP-QLVWTADANGECDYFNQNWCDYTGLTLEESLGSGWLAALHLEDLE 248 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 + T Y + Y + LP+ + FG Sbjct: 249 RSYETWSKAVETGTLYENEYRFKRAADGSYRWLLGRGLPLKDHQGRVV--KWFGTCTDIH 306 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 RL + + + ++ E + S + P + Sbjct: 307 EQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAI 354 >gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid [Agrobacterium tumefaciens str. C58] Length = 1231 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 125/765 (16%), Positives = 254/765 (33%), Gaps = 63/765 (8%) Query: 90 DAHGYLKEISEELPKTI---------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140 D L + + G ++ + D +++Q Sbjct: 160 DRDNQLVYCNARFAEFYSDLDIELKPGIRLEALMKTLYSSSVYRCAKNDGPSFEDWMQKQ 219 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + L +E + + + N G R V + + R Sbjct: 220 LHDFSLPYLERVEQFADGRWVRMVNKRL--ENGMLVGLR--VDVTEFKAHETLLSTQIRE 275 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257 E + + + + + + + ++ + Sbjct: 276 TWLLRAALEQLPVGVFLRDQDRRLTYANAAYNTFLGGNLADHIGKTETEMFPQNGPRFRQ 335 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN------NSKESFEYLSHRNHP-- 309 + + ++ + + G + + ++ Sbjct: 336 ENERILQTGEAIERTGNMPWRDGGAVPVITRLGRVATPDDEYYLVGSVTDVSLLQDREKA 395 Query: 310 --SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-------- 358 + A + + P+ + + + Y NP F + + Sbjct: 396 LIAAQAEAEALHRQLQAVLRALPVGVLLLNADLVIEYVNPFFYQVWGEIGGEKSLVGKSY 455 Query: 359 -DIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + S L D + D+ + V ++ ++ Sbjct: 456 REFMEMNFDSGLYDYGDRPFDDVYEERVQRLLKADAFAP-----REVRSKSGKVTVISKT 510 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 E + D + + ++E + A + G+ ++ +G I+ Sbjct: 511 RLEGGKILSTYADVTDVRMRDAEISKARAELERVGEYMQGATRAMAQGLVLV-EQGTIIM 569 Query: 477 TNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 +N A++++F P + + + F + + + + + Sbjct: 570 SNEAMARMFDVPPHLLEKGRNWAGFFAHC---AGRGDFGTAAEAGETLRIWRENIAANRP 626 Query: 536 EKLL-------SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 L L + + + + + D++E K + +L AE KS+F Sbjct: 627 FSWLVHVAGKSWLNLEAT-NSSGNYWLIIVTDVTEMKVREEELQRLLSRAEAADRAKSEF 685 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ ++G +E++ + R + + I +SGN +L I+ND+LD S Sbjct: 686 LANMSHEIRTPMNGVLGMAELLAKSKLDT----RQKTFTDIIVKSGNALLTIINDILDFS 741 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707 KIE+G+M L P EAV + +SL+ A EK I + ++ +++ D +QI Sbjct: 742 KIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQI 801 Query: 708 ALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIP 764 NI+ NA+ FT +G + +S E LRV D+G+G+ +LE F Q+ Sbjct: 802 VTNIVGNAVKFTETGHVLVELSAQSAEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVD 861 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S R EGTGLGL + +V GK + S +G+ E+ P Sbjct: 862 GSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEVDIP 906 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 85/278 (30%), Gaps = 26/278 (9%) Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V +P + N ++ + ++ E LS L + ++ + Sbjct: 22 RAVAALELPACIKDGELRYVVVNEAYGRVMG-RAPSAFEGQTSLS-LSGDIRDAEREDRE 79 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L + IA A L S + F + P V + Sbjct: 80 RRSLVFATDEAIACHAALSA------QSHMLRCERFIGDDGSLFLFEVFEEMPSAVSRKS 133 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDIL 493 +++ +++ GI + +R+ ++ N ++ + G +E ++ Sbjct: 134 AAVGGASDILFSSGVMDFIDAGIVVYDRDNQLVYCNARFAEFYSDLDIELKPGIRLEALM 193 Query: 494 RKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + ++ +N ++ + L LE+ + + + + + + K Sbjct: 194 KTLYSSSVYRCAKNDGPSFEDWMQKQLHDFSLPYLER--VEQFADGRWVRM---VNKRLE 248 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + D++E+K + LS + + Sbjct: 249 NGMLVGLRVDVTEFKAHETLLSTQIRETWLLRAALEQL 286 >gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470] gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470] Length = 609 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E +L Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIWVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K IR F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIWVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|328954529|ref|YP_004371863.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] gi|328454853|gb|AEB10682.1| multi-sensor signal transduction histidine kinase [Desulfobacca acetoxidans DSM 11109] Length = 824 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 116/652 (17%), Positives = 223/652 (34%), Gaps = 39/652 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + R+ K + G + + S L N Sbjct: 192 LCQDLRISERRYRRIFEGSKDMILVVAPGGGLLDINPAGIAMLGLASKSQALETVNLQDC 251 Query: 243 L-TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + L + E + L + L+ + G L + + Sbjct: 252 FYPWRDWERFRQLLKVHGSVQDFEATLLKGDGGAIQVLLSGAARNNQAGHLVSLDIIAK- 310 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 + + T ++ P+P F + + Y N + LT Y I Sbjct: 311 --DITERKRNEQELLQEKKTTEGILEGLPVPAFVINRQHRIIYWNKACEELTGYSRQQMI 368 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR------------TCIAASARLHTIQWNRE 408 + + + + + + ++ A A + Q Sbjct: 369 DSKKQWLPFYTQERPTLADLVVDQNIKALEKYYNKQKLHKSIHFPGAYEASIQFPQPAGG 428 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + N + + + + + + ++EA+ DGIA+ Sbjct: 429 DRY-LFLVASPIFNDRGQIIGAVQAMLDFTERERLAHNLMESEEKYRLLVEASLDGIALH 487 Query: 469 NREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 R ++ N A +FGY E++ P F+ + +L EI R + Sbjct: 488 TRN-QVMFANSAFLNMFGYSCPEELTGVPLLSFISPIHHPPLLRHLREINRQFNRPRI-F 545 Query: 528 ITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 G K+ + ++ + + DI+E K+ +++L+ ++K+A Sbjct: 546 EIKGMKKDGSEFDIEVVSFPTIFGGQRAFQTHIRDITEKKRLEDQLARSEKLA-----AV 600 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 A V+HEI PL I+ +S + + P R I R +I+ LL Sbjct: 601 GQLSAGVAHEINNPLGGILVYS-YLMLEDLAPDRPERQQ--VEKIIREATRCKEIIKGLL 657 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D S+ + +PV L+ ++E +SLV+ + N + + I+ A +P +L D ++ Sbjct: 658 DFSR----QQPFRLKPVDLNSMLAELLSLVENHLNFQDVGIKKKLAPELPPVLGDKNKLE 713 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ +N+ NA H G + ++T V +RV D G G+ L + PF Sbjct: 714 QVFINLFMNASHAMAGHGVLTVATGQNVLGAVEIRVSDNGPGIHPEHLHRIFDPFF---- 769 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 S + G G GLGL ++ ++ + G+ Y+ ST G I P P Sbjct: 770 STKEVGRGVGLGLSISYGIIKQHRGRIYVDSTAPGGATFVIELPATRPETPQ 821 >gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. 230613] Length = 522 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 161 DDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 218 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG + I + V+ + + ++ T + Sbjct: 219 ANKLFGIKRDIIGENLMDNIRDFELEKVLKDKELGYKEIGILWPEKRTLRVKTTD----- 273 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 274 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 315 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 316 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 370 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 371 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 429 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 430 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 488 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 489 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 520 >gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. Langeland] gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F str. Langeland] Length = 569 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 DDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG + I + V+ + + ++ T + Sbjct: 266 ANKLFGIKRDIIGENLMDNIRDFELEKVLKDKELGYKEIGILWPEKRTLRVKTTD----- 320 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 321 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L++ + F ++ ++ GTGLGL Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P KGT + PL Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4] Length = 790 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 113/546 (20%), Positives = 225/546 (41%), Gaps = 49/546 (8%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAG 364 + ++ F + G + + + S + +K D + Sbjct: 250 RAEQADEIYAATRTRIDTALNHGRCGLFDWDLSRGRI-FWSSSLYEMLGHKPKDSLLSFA 308 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 ++ L + L + + ++ ++ + + + ++ Sbjct: 309 EVADLTHPDDVDLYELATE--LLEAGGGIVD---KMFRMRHANGSWVWLRARGEIQSEPG 363 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 GI + + + + ++L +E S+ + N+ ++ N +L Sbjct: 364 RSEPHLIGICIDVTEQHRLEEQSRTADLRLRDAIETISEAFVLWNKNNELVICNSNYQEL 423 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G P + + + +S + E + + L + Sbjct: 424 HGLPTHAVTPGTPYKDVMAAAENTQVAPQPVKISQRVDAP-EGSYEAQLDDGRWLQIS-- 480 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------------------ 580 ++ + DI+ K+ + +L +K Sbjct: 481 -ERRTKDGGFVSVGTDITALKRHEEQLIDREKELNATVDDLTRSRKTLQLQAKQLEELAD 539 Query: 581 -----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + KS+FLA +SHE+RTPL AIIGFS+++ + FGPLG +Y +Y + Sbjct: 540 KYSEERNRAENANKAKSEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCHD 599 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I SG +L+++ND+LD+SKIE+G+M++ E +S EA +A ++ A EK I + + Sbjct: 600 IHNSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDVTCT 659 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + I ++ AD R++KQI LN+L+NA+ FTP G + + H + + DTG+G+ Sbjct: 660 VEDGI-QVRADRRALKQILLNLLANAVKFTPEHGTVSLK-AHQEKNRICFEISDTGIGIA 717 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + ++ + +PF Q+ N +G+GLGL +A+++++ + GK I S +GT + + P Sbjct: 718 DKDIARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRFLLP 777 Query: 810 LYDTSH 815 D S Sbjct: 778 SSDPSA 783 Score = 43.1 bits (100), Expect = 0.22, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 62/249 (24%), Gaps = 9/249 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT 142 F W++ G + S L + +G+ + + D++ +D +LL+ Sbjct: 277 FDWDLSR-GRI-FWSSSLYEMLGHKPKDSLLSFAEVADLTHPDDVDLYELATELLEAGGG 334 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 K + +V + R G I + + D Sbjct: 335 IVDKMFRMRHANGS-WVWLRARGEIQSEPGRSEPHLIGICI--DVTEQHRLEEQSRTADL 391 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + E + + ++ S H + V+ T Y T+ P Sbjct: 392 RLRDAIETISEAFVLWNKNNELVICNSNYQELHGLPTHAVTPGTPYKDVMAAAENTQVAP 451 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E + L+ Q + + E Sbjct: 452 QPVKISQRVDAPEGSYEAQLDDGRWLQISERRTKDGGFVSVGTDITALKRHEEQLIDREK 511 Query: 321 LTPETVDKC 329 TVD Sbjct: 512 ELNATVDDL 520 >gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827] Length = 1433 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 115/628 (18%), Positives = 222/628 (35%), Gaps = 25/628 (3%) Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + L + ++ EI++ + + D + + L+ +N + T ++ Sbjct: 309 RALVRSYAERPEIREANFAEGVGALD--AVREAVTSLQRQNPMFEATWAMDADGTLVAVS 366 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPS 310 P + ++ Q + L+ + + + Sbjct: 367 PGPSTPPRNNFAYRDYFQGALSTGGPYVSQVYEGLRADHPELVAIAAPVRVGSEIVGVIA 426 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 S E + V G + + D +IA L Sbjct: 427 TSFPIGALTGFVSEVAAGQDVRLAVADRGGSLLTGEQLGVPGLTSGLGDPQIAAALRGQQ 486 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMP 429 ++ A A + + + + Sbjct: 487 GRATTGPDDNPVETSYRSVPGLGWAVVASIDSRTAFAGVARFTGRVLAVTTLLLQMLLVG 546 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ + ++ SIL A D I +GI+ N + ++FG+ Sbjct: 547 LVVTVRGERRGRLAEERLARSAAHTDSILNAAGDAFVTIRPDGIVTRWNSSAERIFGWTG 606 Query: 490 EDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII- 545 E+ L + + + I+ L + + K+ + + Sbjct: 607 EEALGSALVDLVVPDPQRADHLSGVRRIIEGSRPTVLGTTREVVARRKDRSEFPAELTLW 666 Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 +S + DI+E K + +++ A+ A S KS F+A +SHEIRTPL +I Sbjct: 667 SSHYEDRRVFSAFIRDITERKAAEEEIARARDEALSASRMKSAFVANMSHEIRTPLNGVI 726 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G + R +YA + S + +L ++ND+LD SKIE+GK+ + Sbjct: 727 GL----TELLLDTDLDCRQRDYAQTLQNSADALLAVINDILDFSKIEAGKLEIDPVDFDP 782 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 V + +SL+ A + I +P ++ D V+Q+ +N++SNAI FTP G Sbjct: 783 RALVEDVVSLLAASAQAAGLEIAAVVHPPMPPTLVGDAHRVRQVLVNLVSNAIRFTPKGE 842 Query: 724 QII-ISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++ + S EV V DTG+G+ + + + F Q+ S + GTGLGL Sbjct: 843 VVVWVDVAPAAPGESGHEVTFTVADTGIGIPDERQQHLFEAFTQVDASTTRQYGGTGLGL 902 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806 ++K +V+ G+ + S P +G++ Sbjct: 903 TISKQLVELMGGEMGLASEPGEGSVFYF 930 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 35/376 (9%), Positives = 82/376 (21%), Gaps = 44/376 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 TW +DA G L +S G + ++ L + Sbjct: 353 TWAMDADGTLVAVSP------GPSTP-----------PRNNFAYRDYFQGALSTGGPYVS 395 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + EG P +A E G + Sbjct: 396 QVY----EGLRADHPELVAIAAPVRVGSEIVGV--IATSFPIGALTGFVSEVAAGQDVRL 449 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK---NKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + E+ + P + + + T + + L Sbjct: 450 AVADRGGSLLTGEQLGVPGLTSGLGDPQIAAALRGQQGRATTGPDDNPVETSYRSVPGLG 509 Query: 263 TSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + +S+ + F + + R Sbjct: 510 WAVVASIDSRTAFAGVARFTGRVLAVTTLLLQMLLVGLVVTVRGERRGRLAEERLARSAA 569 Query: 321 LTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIE---------------IAG 364 T ++ F + N S + + + + Sbjct: 570 HTDSILNAAGDAFVTIRPDGIVTRWNSSAERIFGWTGEEALGSALVDLVVPDPQRADHLS 629 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G+ +++ + + + V+ R DR+ A L + + + + Sbjct: 630 GVRRIIEGSRPTVLGTTREVVARRKDRSEFPAELTLWSSHYEDRRVFSAFIRDITERKAA 689 Query: 425 PENMPQNGIEPEDVDT 440 E + + E Sbjct: 690 EEEIARARDEALSASR 705 Score = 41.9 bits (97), Expect = 0.49, Method: Composition-based stats. Identities = 23/281 (8%), Positives = 66/281 (23%), Gaps = 18/281 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNT----WY 144 G + + + G + +G L D+ D + + +++ Sbjct: 587 PDGIVTRWNSSAERIFGWTGEEALGSALVDLVVPDPQRADHLSGVRRIIEGSRPTVLGTT 646 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + + + L + Y R FS F + R + Sbjct: 647 REVVARRKDRSEFPAELTLWSS-HYEDRRVFSAF-----IRDITERKAAEEEIARARDEA 700 Query: 205 SHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 +K + + + + + + + D L Sbjct: 701 LSASRMKSAFVANMSHEIRTPLNGVIGLTELLLDTDLDCRQRDYAQTLQNSADALLAVIN 760 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 +L + + E + + L +++ + ++ HP + Sbjct: 761 DILDFSKIEAGKLEIDPVDFDPRALVEDVVSLLAASAQAAGLEIAAVVHPPMPPTLVGDA 820 Query: 320 NLTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + V+ G + + Sbjct: 821 HRVRQVLVNLVSNAIRFTPKGEVVVWVDVAPAAPGESGHEV 861 >gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus degradans 2-40] gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans 2-40] Length = 685 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 110/537 (20%), Positives = 219/537 (40%), Gaps = 25/537 (4%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYS-HGNLFYANPSFLLL 351 + S + + + E F + N F Sbjct: 5 SEVITSRKRQQRSSLGARLRAMQEVRQRYERIFRGSHGYGFVDWDFKNRKMDWNGGFWAY 64 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 Y D +D+ A + + + + I+ + + Sbjct: 65 LGYGETDM--EHISSPGQFMEYVHTDDRAKVNNFVLGELKGVGSGEL-VFRIRKKKGGYI 121 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + +G+ + + ++ + I + I+++++DGI + + Sbjct: 122 WAEVRVDNVRDSQGRVSFMSGVVFDVTKQKQTEQALLISEARHARIIQSSNDGIWEWSAD 181 Query: 472 -GIILSTNRAVSKLFGYPVEDIL-------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 G +NR L GY D + + + + + L + + + Sbjct: 182 HGGFQFSNRCWE-LLGYDQHDDELNQGVDKVQAWRDRMHPEDGELFDRTLEKHIKGEGP- 239 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579 + K +R + ++ S T DI++ KQ + K+ AK++AE Sbjct: 240 -FDVEYRIKGKNGNWRWIRGRGQLAFDAAGQPLRMSGTNMDITQLKQAEEKVVKAKELAE 298 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 K + KS+FL+ +SHE+RTPL AI+GF+++ + NP E I+++G +L+ Sbjct: 299 KANKAKSEFLSSMSHELRTPLNAILGFAQLFE---LDKNLNPAQRENIGEIEKAGKHLLE 355 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698 ++ D+LD++KIE+GKM+ E ++ V E I L++ A + R+ I F + Sbjct: 356 LIGDVLDLAKIEAGKMDFELEQLNPMRLVDECIPLMRPLAVKNRVEINVHNFELGNASVR 415 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD +KQ+ +N++SNAI + G++ I + T + + V+DTG G+ + + + Sbjct: 416 ADSVRLKQVFINLISNAIKYNRKDGRVDIVFSETEEGHLRVSVQDTGFGIPLKQQKYMFQ 475 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 PF ++ +++ EG+G+GL + + +V+ G+ S KG+ + PLY S Sbjct: 476 PFNRL-GAERGEIEGSGVGLVITRQLVEQMGGELGFSSDEGKGSKFWVQLPLYSESA 531 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 16/200 (8%), Positives = 43/200 (21%), Gaps = 13/200 (6%) Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G+ + Y+ ++ + S G +V + + Sbjct: 106 SGELVFRIRKKKGGYIWAEVRVDNVRDSQGRVSFMSG--VVFDVTKQKQTEQALLISEAR 163 Query: 204 FSHLHEIKKGHSSVEKEKY-----------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + + + + + Q + +KV + + +D Sbjct: 164 HARIIQSSNDGIWEWSADHGGFQFSNRCWELLGYDQHDDELNQGVDKVQAWRDRMHPEDG 223 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L E + N N + + + + + Sbjct: 224 ELFDRTLEKHIKGEGPFDVEYRIKGKNGNWRWIRGRGQLAFDAAGQPLRMSGTNMDITQL 283 Query: 313 AYFDEGENLTPETVDKCPIP 332 +E E +K Sbjct: 284 KQAEEKVVKAKELAEKANKA 303 >gi|332992814|gb|AEF02869.1| putative two-component member protein [Alteromonas sp. SN2] Length = 1109 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 100/513 (19%), Positives = 206/513 (40%), Gaps = 19/513 (3%) Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 +S+ E E + D V S G + ANP+ +T Y + I G + Sbjct: 261 VSSRAIESERIQRAITDIAVDAIITVDSTGIIKTANPAVTAVTGYSPEELIGQQGKILA- 319 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + + + + N Sbjct: 320 ----PDDKKSIYSSDFFEQKSVPTEQIIGTSREVVIVGKGGEYIPVRVGIGYTKVDGNAL 375 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--IN-REGIILSTNRAVSKLFG 486 G + + + + + S + GIA +N + ++ + AVS++ G Sbjct: 376 FVGFFSDLRKRKAMEDALRESEAKFRSFISNIP-GIAYRCLNEPDWPMVFISDAVSEITG 434 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + +D + + + ++ ++E + + + ++ + Sbjct: 435 HAADDFILPNPRITFGSLCHPDDLKRVETEVTDQNTFSIEYRIINKKGDVRWVTEHGVHV 494 Query: 547 KLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + + DI+ ++ + +L AK+ AE+ ++ +++FLA +SHEIRTP+ AII Sbjct: 495 LDEQGNTIYLDGFISDITARREMEEELKAAKERAEQAAAARTNFLANMSHEIRTPMNAII 554 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFS+++ ++ P + ++RS +L ++ND+LD +K++ GK++L + + Sbjct: 555 GFSDLMLAEKMSP----EQHGHLTTVNRSARSLLHLLNDILDSAKLDKGKLDLDYRDFII 610 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 E V IS L A KRI + + + ++Q+ N++ NA+ FT G Sbjct: 611 REEVDTVISTFWLEAKSKRISLEVQVGSEVREAYNGVPERIRQVLNNLIGNAVKFTGDGS 670 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +++ + + + V +V+D+G+GM + ++ + F Q S + GTGLG ++K Sbjct: 671 -VVLEVS-SDSSFVYFKVKDSGIGMNSEQVNRVFDAFAQADASMSRKYGGTGLGTTISKQ 728 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V+ G S G+ PL P Sbjct: 729 LVELMGGNICAQSELGVGSTFTFRLPLVPAKAP 761 Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 84/252 (33%), Gaps = 20/252 (7%) Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + +V + + G L+ + + A + R + + Sbjct: 170 ALWIKFGLSAVGIKKSSLGRDALIASIVMGLAIAGMHYTGMLAARFVMPPGMEFTSQPSE 229 Query: 407 RENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 LA++ + + I +++ +I + D I Sbjct: 230 ISIYLALSIAMVTVTLIALVLGITLLFKYKDVSSRAIESERIQ------RAITDIAVDAI 283 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 ++ GII + N AV+ + GY E+++ + + + S+ + E S+ Q + Sbjct: 284 ITVDSTGIIKTANPAVTAVTGYSPEELIGQQGKILAPDDKKSIYSSDFFEQKSVPTEQII 343 Query: 526 E--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + K + + +R+ I + D+ + K ++ L +E Sbjct: 344 GTSREVVIVGKGGEYIPVRVGIGYTKVDGNALFVGFFSDLRKRKAMEDAL--------RE 395 Query: 582 SSHKSD-FLARV 592 S K F++ + Sbjct: 396 SEAKFRSFISNI 407 Score = 42.7 bits (99), Expect = 0.25, Method: Composition-based stats. Identities = 37/395 (9%), Positives = 103/395 (26%), Gaps = 44/395 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---------IDPNNHIGDLLKR 139 +D+ G +K + + G ++IG + + + + + + Sbjct: 286 VDSTGIIKTANPAVTAVTGYSPEELIGQQ-GKILAPDDKKSIYSSDFFEQKSVPTEQIIG 344 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + G + V + + + N F GF R + Sbjct: 345 T---SREVVIVGKGGEYIPVRVGIGYTKV-DGNALFVGF-----FSDLRKRKAMEDALRE 395 Query: 200 LDKKFSH----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD--V 253 + KF + I + S + Sbjct: 396 SEAKFRSFISNIPGIAYRCLNEPDWPMVFISDAVSEITGHAADDFILPNPRITFGSLCHP 455 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 ++ +++++ + + ++ + + + + + Sbjct: 456 DDLKRVETEVTDQNTFSIEYRIINKKGDVRWVTEHGVHVLDEQGNTIYLDGFISDITARR 515 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 +E E ++ + F AN S + T + G S L+ A Sbjct: 516 EMEEELKAAKERAEQ------AAAARTNFLANMSHEIRTPMNA------IIGFSDLMLAE 563 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 K+S + RS R+ + + + L + + F + + + Sbjct: 564 KMSPEQHGHLTTVNRSARSLLHLLNDILDSAKLDKGKLDLDYRDFIIREEVDTVISTFWL 623 Query: 434 EPEDVDTRINKR---KMEIEV----MQLCSILEAT 461 E + + + ++ ++ +L Sbjct: 624 EAKSKRISLEVQVGSEVREAYNGVPERIRQVLNNL 658 >gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus pseudofirmus OF4] Length = 960 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 104/511 (20%), Positives = 212/511 (41%), Gaps = 34/511 (6%) Query: 319 ENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E+L E + ++ FY + + ++ + GL Sbjct: 316 EDLFDELLTHLSDIYPVDKMLLFLTEETFYRSRGIYDKHVTQLLNHFDQGIGLILREKNN 375 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA---NQFPENMPQ 430 + V ++ A + E K + E Sbjct: 376 YHLVEREVTDVERGLAEGVLTAYDLYIPIYSSGGELRAVFATNRVGKPFLQTEINELSGV 435 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 ++ + + E E I++ ++ I ++ EG +L N++ +L + Sbjct: 436 MNHMSIAIEKVLMHEETEKERQLNQDIIDNVNEAIQFVDNEGHLLQFNQSFCQLIECEQK 495 Query: 491 DILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 L+ PF+++ + + + E L D L TK++++ + Sbjct: 496 AQLKAPFSMWFQALEHVVGGNEAVASFYNEALKQDNSSVLSMNYEIHTKQKRIFKVYAEP 555 Query: 546 KKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 ++ DI++ + + KS+ ++ VSHE+RTPL++I+ Sbjct: 556 VYHGYNKVGTIFVHRDITKQHEVE--------------QMKSELVSTVSHELRTPLSSIL 601 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GF+E++ +++ P + +Y I + N + +++ND LD+ ++ESG E + + Sbjct: 602 GFTELMLHRKLKP---EKQEKYLKTIHKEANRLTNLINDFLDLQRMESGGQMYTNESLDI 658 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + +SE ++ + Y+ + + I I D ++Q+ NI+SNAI F+P+GG Sbjct: 659 RDLISEVLTRFEAYSEKHTLHFINLAEKTI--IQGDSERIQQVITNIISNAIKFSPNGGD 716 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I +T +++ + + V+D G+G+ E++ + F +I NS + + GTGLGLP+ K + Sbjct: 717 IT-TTLASNSTSLFVSVKDDGLGIPENEMKNLFRKFYRIDNSDRKKIGGTGLGLPICKEI 775 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 V+A+ G + S +G+ I PL D S Sbjct: 776 VEAHNGTISVESKENEGSTFIIELPLNDCSQ 806 >gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428] Length = 528 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 181/367 (49%), Gaps = 12/367 (3%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +I++++ D I N I+ S N++ ++FG+ E+++ +P + + H L Sbjct: 20 LPAIIDSSEDAIVSKNLHSIVTSWNKSAERIFGFTAEEMIGQPISRLFPPDRMEEETHIL 79 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569 + I + + + T+ K+ K + + + I + + + DI+ K Sbjct: 80 SRITAGE--RVEHFETIRVRKDGKEIDVSLTISPVRDKTGKIVGASKIARDITGQKDAAR 137 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L+ A + ++ K DFLA +SHE+RTPLTAI+G+ +++K + + Sbjct: 138 RLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEA----TPADLAQGLEV 193 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+R+ L ++ DLLD+S+IE+GK++L + V L V+ A+ V+ A+ K I + + Sbjct: 194 IERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSL 253 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A+ + D ++QI N+L+NAI FTP+ G+I + T H + V + V D G G+ Sbjct: 254 LADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQV-TMHRAKSNVEVIVSDNGQGIA 312 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L+ F Q S + G G+GL +A+ + + + G + S KG + Sbjct: 313 PEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLGLGKGASFTLSL 372 Query: 809 PLYDTSH 815 P+ H Sbjct: 373 PMLSAHH 379 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 22/250 (8%), Positives = 71/250 (28%), Gaps = 8/250 (3%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIE 153 + ++ + G A +MIG + + ++ HI + +T + Sbjct: 40 VTSWNKSAERIFGFTAEEMIGQPISRLFPPDRMEEETHILSRITAGERVEHFETIRVRKD 99 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G + V + ++ P+ + + G I D + + +K Sbjct: 100 GKEIDVSLTIS--PVRDKTGKIVGASK--IARDITGQKDAARRLAQAHEDLKRADRLKID 155 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + + +K + T + + L + L + Sbjct: 156 FLATLSHELRTPLTAILGWIQILKEEA---TPADLAQGLEVIERNVRLQSQLIEDLLDMS 212 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 ++ ++ + N + ++ + L++ + + +T ++ Sbjct: 213 RIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSLLADVDGVTMGDKNRLQQIV 272 Query: 334 FVYSHGNLFY 343 + + + Sbjct: 273 WNLLTNAIKF 282 >gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 798 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 256 QAARAREADDLSRQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 315 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 316 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 370 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 371 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 427 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 428 EYAGLPVWMLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 483 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 484 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 540 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 541 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 600 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 601 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 660 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 661 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 718 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 719 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 778 Query: 807 IFP 809 P Sbjct: 779 CIP 781 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 60/254 (23%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 285 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 342 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 343 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 397 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V L + T Sbjct: 398 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWMLKPGVPRNEVDAHTRP---F 453 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 454 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 513 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 514 ERRLMATVHDLSIA 527 >gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 593 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 151/364 (41%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E L +IL + +DG+ IN +G IL TN + + + Sbjct: 247 ALNQEKEHLSNILSSMADGVITINIDGTILMTNPPAERFL---QAWYYEQNMKIKDGDEL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G T + L + + D++E + Sbjct: 304 PPEARELFHTAVSTEKEQMIEVTLQGRT----WVLLMSPLYNQQDVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + G E Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAG--SEEEKKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L+ E +E + A EK++ Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVD 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + P + D ++Q+ N++ NAI TP GG++ S + + + V+D+G Sbjct: 464 LTYDIQVDEPHFVLDPDKMEQVFTNLIDNAIRHTPEGGEVHFSVQSVESG-LKMDVKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S GT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132] gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans ND132] Length = 1141 Score = 340 bits (872), Expect = 6e-91, Method: Composition-based stats. Identities = 105/425 (24%), Positives = 180/425 (42%), Gaps = 56/425 (13%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 R+ + ++ + + E + +GI +I+ I NR + + GY E+++ K Sbjct: 215 QVRLRETELRESEEKYRRLFETSIEGIVMIDVTEHIFEVNRIFADMLGYSEEELVGKFVP 274 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 + + + Q + K+ + I + Sbjct: 275 DLIHGEDQKNHEKEIALRRAGHASQ---YERRLARKDGSEVWTMISASPQFDARGEFNGV 331 Query: 555 SLTMHDISE---------------------------------------WKQEKNKLSHAK 575 + DI+ KQ + ++ AK Sbjct: 332 FAMITDITPLRIAQANLKTAYDELEKRVVERTDELNKTNRLLTSEIHIRKQTEKEIIKAK 391 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + AEK + KS+FLA +SHEIRTP+ AIIG + +IK +Y N ID S Sbjct: 392 EAAEKATLAKSEFLANMSHEIRTPMNAIIGMTHLIKMTELSAT----QRDYLNKIDISAK 447 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L I+ND+LD+SKIE+G + + L++ + + ++V ANEK++ S ++P Sbjct: 448 SLLGIINDVLDLSKIEAGMLTVESVGFKLEQVLEQLTTIVSPRANEKKLEFLISVGKDVP 507 Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE--EVILRVRDTGVGMTNY 751 I D + QI +N+ +NA+ FT G ++ IST + + V+D G+G+ Sbjct: 508 PAIQGDPMRMAQILINLCNNAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGIGIKPG 567 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFP 809 ++++ +PF Q S + GTGLGL L K +VD G+ S KG+L + FP Sbjct: 568 KIQELFQPFTQADASTTRKYGGTGLGLSLCKQLVDLMGGEIGAESEFGKGSLFWFEVTFP 627 Query: 810 LYDTS 814 +Y Sbjct: 628 IYRDE 632 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID ++ E++ +G +++G + D+ + L + + + Sbjct: 244 IDVTEHIFEVNRIFADMLGYSEEELVGKFVPDLIHGEDQKNHEKEIALRRAGHASQYERR 303 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 L +G+ V ++A P + EF+G F ++ +A K Sbjct: 304 LARKDGS--EVWTMISASPQFDARGEFNGV--FAMITDITPLRIAQANLKTA 351 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 9/145 (6%) Query: 312 SAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E E + + ++F N F + Y S +++ + Sbjct: 220 ETELRESEEKYRRLFETSIEGIVMIDVTEHIFEVNRIFADMLGY-SEEELVGKFVPDLI- 277 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 N K + L R+ AS + + + + + E Sbjct: 278 --HGEDQKNHEKEIALRRA----GHASQYERRLARKDGSEVWTMISASPQFDARGEFNGV 331 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC 455 + + RI + ++ +L Sbjct: 332 FAMITDITPLRIAQANLKTAYDELE 356 >gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6] Length = 1603 Score = 340 bits (872), Expect = 7e-91, Method: Composition-based stats. Identities = 113/763 (14%), Positives = 233/763 (30%), Gaps = 56/763 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKM----IGMRLCDVSDILHIDPNNHIGDLLKRQN 141 TW + +E G ++ IG ++ + + + + Sbjct: 349 TWEWNVETGETIFNERWAGIAGYTLDELAPTHIG-TWSALTHPDDLRRSAVLLEHHFNGA 407 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + +V + + R+ G A + Sbjct: 408 LPAYECEVRMRHRDGHWVWVLDRGK-LSGRSESGRPLWMAGTHMDISERKHAEAALRASQ 466 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKT 256 I + T + L Sbjct: 467 DLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPGHRPTLTEVMSYFDPESRPLLE 526 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSA 313 + + + F T + T + L + Sbjct: 527 QAVQRSIATGEGYDMELPFTTAGGQHIWVRAVGETEFVGDQAVRMLGTLQEVTARRELES 586 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLL-- 370 + ++ P V+ L A N F L ++ Sbjct: 587 ELRRNNEVLASVLENLPCGLSVFDADGLLVAANAQFRSLLDLPDRLFEGPVTRFEDIIRH 646 Query: 371 -DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + I+ + DR SL + P Sbjct: 647 NAEHGEYGPDDIEAKIRTIVDRARSPVVQHQFERVRPDGTSLEIRGGPLP-------AGG 699 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---- 485 + R + +++ L ++ + + + + ++ N +++ Sbjct: 700 FVTTYTDISARRKAEAEVQRSAQLLRGAIDTIDEAFVLYDPDDRLVFCNDKYRRIYAASA 759 Query: 486 -----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 G E+I+RK + ++ ++ E ++ + + + + L Sbjct: 760 DLIVPGTTFEEIVRKGAERGQYVDAIGRVDDWVAERMAAHRAG--NAPLVQALDDGRTLR 817 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + +++ DI+E A++ AE S KS+FLA +SHEIRTP+ Sbjct: 818 I---VERRMPDGHTVGFRIDITE-------FQRAREAAEAASRAKSEFLANMSHEIRTPM 867 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AI+G ++ P R +Y + + +L ++ND+LD SK E+ +M L Sbjct: 868 NAILGMLALLHKTELAP----RQADYVAKTEGAARSLLRLLNDILDFSKAEAERMVLEAR 923 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 P +D+ + + ++ K + + +PR ++ D ++Q+ +N+ NAI FT Sbjct: 924 PFRIDQLLRDLSVILSANIGGKEVEVLFDIDPTLPRALVGDAMRLQQVLINLGGNAIKFT 983 Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G ++++S + + VRDTG+G+ + F Q S R GTG Sbjct: 984 AEG-EVVVSVAVRERSALGVTLQIAVRDTGIGIAAENQARIFSAFTQAEASTTRRFGGTG 1042 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 LG+ +++ +V G+ + S P +G+ L P D Sbjct: 1043 LGVAISQRLVALMGGELQVASEPGRGSRFHFCITLPVAPEPAD 1085 Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats. Identities = 33/510 (6%), Positives = 129/510 (25%), Gaps = 31/510 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D + +++ + G + +G + P + + + Sbjct: 93 TDRALRITWVNDAFTQVYGYSPEQALGATPGRLLGHPDSSPAAIDTLLRSAAAGVGCRVE 152 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G +++V ++ P++ + GF I ++ + Sbjct: 153 ILNRAADGHDVWVDTEV--QPVHDDAGQVIGF--VEIATDISASKLAVQEIADQRRRLAA 208 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEY----------YAHKDDV 253 + + + + + + + L + A + Sbjct: 209 IIDGTQAGTWEHDLAKSENRVNAAYAQMLGYTLPEYTALLRAHSFPSLVHPDDLARVEQA 268 Query: 254 LKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 ++ + E+ + H + + + + +L Sbjct: 269 RESHLTGRSSEYEAEFRMRHKAGHWVWIQSRGRVTGHDAHGRPLVIAGIHLDISARKHAE 328 Query: 313 AYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 G+ + + + + G + N + + Y + G + L Sbjct: 329 LELTRGQQRLANILAGTDVGTWEWNVETGETIF-NERWAGIAGYTLDELAPTHIGTWSAL 387 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P D ++ + + A + + + ++ + Sbjct: 388 THPD--DLRRSAVLLEHHFNGALPAYECEVRMRHRDGHWVWVLDRGKLSGRSESGRPLWM 445 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PV 489 G + + + + + L G + + ++ G P Sbjct: 446 AGTHMDISERKHAEAALRASQDLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPG 505 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIK 546 + + + ++ + ++ + + +T + + +R Sbjct: 506 HRPTLTEVMSYFDPESRPLLEQAVQRSIATG--EGYDMELPFTTAGGQHIWVRAVGETEF 563 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + T+ +++ ++ +++L + Sbjct: 564 VGDQAVRMLGTLQEVTARRELESELRRNNE 593 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 41/522 (7%), Positives = 120/522 (22%), Gaps = 37/522 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFK----MIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 TW D ++ + +G + + + + + Sbjct: 217 TWEHDLAKSENRVNAAYAQMLGYTLPEYTALLRAHSFPSLVHPDDLARVEQARESHLTGR 276 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + + +V I + + G + ++ + L + Sbjct: 277 SSEYEAEFRMRHKAGHWVWIQSRGRVTGHDAHGRPLVIAGIH-LDISARKHAELELTRGQ 335 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-------EYYAHKDDV 253 + + L G E + + + T + Sbjct: 336 QRLANILAGTDVGTWEWNVETGETIFNERWAGIAGYTLDELAPTHIGTWSALTHPDDLRR 395 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----HRNH 308 + + + + + +++ Sbjct: 396 SAVLLEHHFNGALPAYECEVRMRHRDGHWVWVLDRGKLSGRSESGRPLWMAGTHMDISER 455 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLS 367 A ++L T + + Y G + + Sbjct: 456 KHAEAALRASQDLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPG---HRPTLTE 512 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + S + V + + + + + + Sbjct: 513 VMSYFDPESRPLLEQAVQRSIATGEGYDMEL---PFTTAGGQHIWVRAVGETEFVGD-QA 568 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G E R + ++ L S+LE G+++ + +G++++ N L Sbjct: 569 VRMLGTLQEVTARRELESELRRNNEVLASVLENLPCGLSVFDADGLLVAANAQFRSLLDL 628 Query: 488 PVEDILR--KPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 P F + N P + + I+ ++ + L Sbjct: 629 PDRLFEGPVTRFEDIIRHNAEHGEYGPDDIEAKIRTIVDRARSPVVQHQFERVRPDGTSL 688 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 +R + + T DIS ++ + ++ + ++ Sbjct: 689 EIRGGPLP---AGGFVTTYTDISARRKAEAEVQRSAQLLRGA 727 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 40/409 (9%), Positives = 103/409 (25%), Gaps = 22/409 (5%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 ++ AL R + + + V ++ ++ + Sbjct: 74 AEHGLLALVARRTSNAVIITDRALRITWVNDAFTQVYGYSPEQALGATPGRLLGHPDSSP 133 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D L + L + + + +++ + ++ Sbjct: 134 AAIDTLLRSAAAGVGCRVEILN-----RAADGHDVWVDTEVQPVHDDAGQVIGFVEIATD 188 Query: 309 PSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVD--DIE 361 S S + +D + + N ++ + Y + + Sbjct: 189 ISASKLAVQEIADQRRRLAAIIDGTQAGTWEHDLAKSENRVNAAYAQMLGYTLPEYTALL 248 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 A +L+ L+ + L A + Sbjct: 249 RAHSFPSLVHPDDLARVEQARESHLT---GRSSEYEAEFRMRHKAGHWVWIQSRGRVTGH 305 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + GI + + + ++ +L +IL T G N E N Sbjct: 306 DAHGRPLVIAGIHLDISARKHAELELTRGQQRLANILAGTDVGTWEWNVETGETIFNERW 365 Query: 482 SKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + + GY ++++ + L + L E E ++ + Sbjct: 366 AGIAGYTLDELAPTHIGTWSALTHPDDLRRSAVLLEHHFNGALPAYECEVRMRHRDGHWV 425 Query: 540 SLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + T DISE K + L ++ + ++ Sbjct: 426 WVLDRGKLSGRSESGRPLWMAGTHMDISERKHAEAALRASQDLLDRTGR 474 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 56/184 (30%), Gaps = 10/184 (5%) Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEAT 461 A A + + R + +M+ + + L + T Sbjct: 27 RPEAPQHAWAPWLASAAGLLGNAVLAVWLWRRVRRCRQVESQMQQWLAEHGLLALVARRT 86 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLD 520 S+ + I +R I N A ++++GY E L L ++ L + Sbjct: 87 SNAVIITDRALRITWVNDAFTQVYGYSPEQALGATPGRLLGHPDSSPAAIDTLLRSAAAG 146 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576 + + L + + + ++ + + + DIS K +++ ++ Sbjct: 147 VGCRV--EILNRAADGHDVWVDTEVQPVHDDAGQVIGFVEIATDISASKLAVQEIADQRR 204 Query: 577 IAEK 580 Sbjct: 205 RLAA 208 >gi|320353798|ref|YP_004195137.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320122300|gb|ADW17846.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1073 Score = 340 bits (872), Expect = 7e-91, Method: Composition-based stats. Identities = 115/750 (15%), Positives = 233/750 (31%), Gaps = 63/750 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + DAH + ++ G + I L +V ++ + G Sbjct: 213 VLSTDAHNRVLFMNPVAEALTGWTLAEAINKPLTEVVRMVDGQGGPV------PREGSAG 266 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L +G I I + + +G + ++ R +R + F Sbjct: 267 RAVLRCRDGAQY--TITQHTAAIRDGHHDRAGT--VLVFRDIGEEDRARQRLQRSELLFR 322 Query: 206 HLHEIKKGH-SSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 +L E ++ + DI K + + + + ++ Sbjct: 323 NLFEHHAAVKLIIDPDTGDIIEANQAAELFYGWPKELLIQMNIAQINTLPLEDIQREINK 382 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGEN 320 + + + ++ + + H + EN Sbjct: 383 AKHARRKYFAFRHRLADGSVRDVDVFNSNIEVAGRTLLHSIVHDVTSQKMAQEALQAKEN 442 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 P+ V N +T Y + G L P + Sbjct: 443 YLRSIFRAAPVGIGVVRQRVFVTVNDHLCAMTGYTQAEL----TGQDARLLYPDEHEYLR 498 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + ++ + + + E + + + +T Sbjct: 499 VGVGKYRMIAQRGT-GTMETQWVRKDGQCIDVLLGSTPFNPGDLGEGVTFTAL--DITET 555 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + +E +L ++ + + + +G + N A +L G+ +EDI+ + V Sbjct: 556 KQKAADLE----RLRVAIDQAGEIFIVTDPQGTVQYANPAFEQLTGHTLEDIVGQNPRVL 611 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + L +S T + K+ L + I + Y Sbjct: 612 KSGQHDAAFYQDLWATISKGK--TWNGRLVNKRKDGSLYTEEATISPVFAPGGEIINYVA 669 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI+ + + + A+K+ V+H+ L+ IIG++E+ Q Sbjct: 670 VKRDITAHLKLEQQFLQAQKM-----ESVGRLTGGVAHDFNNILSVIIGYTEMALEQ--- 721 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + I + + DIV LL S+ + + + ++L+ V +++++ Sbjct: 722 TEPSQKIHHNLRKILEAASRSADIVRQLLAFSR----QQIIAPKVLNLNSTVEGMLNMLR 777 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------- 729 ++I + A +P I D V QI N+ NA G I+I+T Sbjct: 778 PML-GEQIELIWRPAQGVPAITMDPVQVDQIVANLCINARDAIDGTGTIVIATQDVVVDE 836 Query: 730 -------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 V L V DTG G+ ++K +PF G GTGLGL Sbjct: 837 GNRAENDECAPGAYVRLSVSDTGCGIEKPLIDKIFEPFFTTKG----VGHGTGLGLSTVY 892 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +V N G + STP +GT +I P + Sbjct: 893 GIVKQNRGTIQVHSTPGQGTRFDIHLPAHH 922 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 13/134 (9%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ L +IL + + + + +L N L G+ + + + KP T + Sbjct: 194 EVRQTKEHLHTILHSLGEAVLSTDAHNRVLFMNPVAEALTGWTLAEAINKPLTEVVRMVD 253 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561 + ++ ++ + L DI Sbjct: 254 GQGGPVPREGSAGRA---------VLRCRDGAQYTITQHTAAIRDGHHDRAGTVLVFRDI 304 Query: 562 SEWKQEKNKLSHAK 575 E + + +L ++ Sbjct: 305 GEEDRARQRLQRSE 318 >gi|329851158|ref|ZP_08265915.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328840004|gb|EGF89576.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1409 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 103/641 (16%), Positives = 203/641 (31%), Gaps = 39/641 (6%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE--------KEKYDIFSQQSPPPHLR 235 + ++ R + + + L + G +V+ + + Sbjct: 784 LRAADLELARRNSEQEALRTAAVLDTVLDGVLTVDIEGMITSINPAGVEIFGYAAEDIVG 843 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-- 293 + + + + S L + N + ++ Sbjct: 844 QPASLLMIEPQRLFT-ERYSAQPDNRGRFATSILGLETLARRQNGELFPIDLSVSAMRLS 902 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLT 352 + ++ P ++ G A+ +L Sbjct: 903 GKAVFVTTVRDITERKRQEIALSVTVEQLKLLIENTPAAVAMFDKGLRCIMASHRWLQDY 962 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + I G P++ + + +R + Q Sbjct: 963 NLVGTEII----GRHHYDIFPEIRNMPHWVDIHRRALCGEV--FDSREESWQRVDGEREW 1016 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + + + + + S +E S G+A+++ EG Sbjct: 1017 LNWAIHPWTGPDGDTGGIVMFTEVITPRKQAEIALMTSEETFRSAMENASIGMALVSPEG 1076 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 L N A+ L GY + L + +L ++ Sbjct: 1077 RWLKVNTALCALLGYAELEFLASDVQSLTHADDLEGDRAQADRLLGDEIES-YTLEKRYF 1135 Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + ++ + + S + + DI++ ++ + +S+F Sbjct: 1136 HRNGHVIWGLQSVSLVRKSDGQPDYFIAQIQDITQRREME--------------HIQSEF 1181 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 ++ SHE+RTPLTAI G + + R+ +L +VND+LDI Sbjct: 1182 VSVASHELRTPLTAIHGSL-GMLAGPMASQLPETAGRMVDLAHRNSERLLGLVNDILDID 1240 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 K+ SG+M + SL E V++++ Q +A+ + + S + R D Q+ Sbjct: 1241 KLTSGQMRFDMQVESLAELVAQSVEANQPFADRYGVSMHLSPVDAGLRARLDGDRFAQVM 1300 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+LSNA F+ G+I I + +V + V D GVG+ K + F Q +S Sbjct: 1301 ANLLSNAAKFSHREGRIDIDVQIE-SGQVRITVTDHGVGIPEAFRGKIFERFSQADSSMT 1359 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL +A+ MV+ G+ S +GT I P Sbjct: 1360 RNKGGTGLGLYIARQMVERMGGQLGFDSVEGEGTSFWIKLP 1400 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 47/401 (11%), Positives = 112/401 (27%), Gaps = 22/401 (5%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + + R L + + E K + + + + Sbjct: 546 VTLRDKERDYTLGLVDRDAARLETMLNGRIQSKVAALSQTAHRWQAAGEVTQALWQVETR 605 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEY 302 + + ++ E + + + Q ++ K F Sbjct: 606 GYKDEGAGIVTLVWFDSDGKAKWIEPDVPAVAAVLPRSGPTVVDVSQPYALSDGKLGFSV 665 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + G D + A +++ +S Sbjct: 666 AFPVEDRRRTTGHVSGVFSVQALFDNLFGGDTGDDYRVTLKATAGDFVISAPQSRLAGNA 725 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + R+ + + + Sbjct: 726 WVVVRQMRVLDHAWELRLEPTAAFVAAQRSPLPV--------------IVLFAGLTIAIL 771 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 D + +R E E ++ ++L+ DG+ ++ EG+I S N A Sbjct: 772 AALSVNALMLARLRAADLELARRNSEQEALRTAAVLDTVLDGVLTVDIEGMITSINPAGV 831 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL--RQTLEKITLGSTKEEKLLS 540 ++FGY EDI+ +P ++ + + Y + + L TL + +L Sbjct: 832 EIFGYAAEDIVGQPASLLMIEPQRLFTERYSAQPDNRGRFATSILGLETLARRQNGELFP 891 Query: 541 --LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 L + +L + + T+ DI+E K+++ LS + + Sbjct: 892 IDLSVSAMRLSGKAVFVTTVRDITERKRQEIALSVTVEQLK 932 Score = 78.1 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 27/374 (7%), Positives = 74/374 (19%), Gaps = 27/374 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 +D G + I+ + G A ++G + + + Sbjct: 814 VLTVDIEGMITSINPAGVEIFGYAAEDIVGQPASLLMIEPQRLFTERYSAQPDNRGRFAT 873 Query: 146 -----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +T G + + ++A+ + + V Sbjct: 874 SILGLETLARRQNGELFPIDLSVSAMRLSGK------AVFVTTVRDITERKRQEIALSVT 927 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEK 258 ++ L E ++ + + ++ Y + Sbjct: 928 VEQLKLLIENTPAAVAMFDKGLRCIMASHRWLQDYNLVGTEIIGRHHYDIFPEIRNMPHW 987 Query: 259 Y---PLLTSEESSLPEQEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHRNHPSL 311 E +E + ++ + G + Sbjct: 988 VDIHRRALCGEVFDSREESWQRVDGEREWLNWAIHPWTGPDGDTGGIVMFTEVITPRKQA 1047 Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E ++ I V G N + L Y ++ + L Sbjct: 1048 EIALMTSEETFRSAMENASIGMALVSPEGRWLKVNTALCALLGYAELEFLASDV---QSL 1104 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + L + R + + + Sbjct: 1105 THADDLEGDRAQADRLLGDEIESYTLEKRYF---HRNGHVIWGLQSVSLVRKSDGQPDYF 1161 Query: 431 NGIEPEDVDTRINK 444 + R + Sbjct: 1162 IAQIQDITQRREME 1175 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 26/324 (8%), Positives = 70/324 (21%), Gaps = 16/324 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146 + G +++ L +G + + + ++ ++ + D L + Sbjct: 1072 VSPEGRWLKVNTALCALLGYAELEFLASDVQSLTHADDLEGDRAQADRLLGDEIESYTLE 1131 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS- 205 + G + + + + + F + + + S Sbjct: 1132 KRYFHRNGH--VIWGLQSVSLVRKSDGQPDYF--IAQIQDITQRREMEHIQSEFVSVASH 1187 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + Q P RM + + V LTS Sbjct: 1188 ELRTPLTAIHGSLGMLAGPMASQLPETAGRMVD--LAHRNSERLLGLVNDILDIDKLTSG 1245 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + Q + + Q + + S D + Sbjct: 1246 QMRFDMQVESLAELVAQSV--EANQPFADRYGVSMHLSPVDAGLRARLDGDRFAQVMANL 1303 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + F + G + + + + + G+ + M Sbjct: 1304 LSNA--AKFSHREGRIDIDVQ---IESGQVRITVTDHGVGIPEAFRGKIFERFSQADSSM 1358 Query: 386 LYRSDRTCIAASARLHTIQWNREN 409 T + ++ Sbjct: 1359 TRNKGGTGLGLYIARQMVERMGGQ 1382 >gi|298251303|ref|ZP_06975106.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297545895|gb|EFH79763.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 744 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 109/748 (14%), Positives = 232/748 (31%), Gaps = 55/748 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + G +G + + + + T Sbjct: 32 VDQENTIFYANATAEAMAGATRGAFLGKNIWQCPNTPRVINAPLYNTFFQATQTHT--PL 89 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + P F H + + + ++ + Sbjct: 90 QVEYVSPLTHTWRHVHIAPT--AEGAMVHF------HETTLYTMLQDALFQSEQLRQAIA 141 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + ++ + P + + A + + + Sbjct: 142 DGVPAGIAILTADGIVLEINKVPLENAQVQLEDVVGKPLADAPWWASSSAMQQRLHDAVA 201 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLTPE 324 + + + Y KK L+ + + E Sbjct: 202 QAGKGEVVRFDARVYPKKVGERELEVTITPHLNANQEVTYLLYTGFDVTERKRAEAELRF 261 Query: 325 TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + P +V L Y N + T P+ ++ Sbjct: 262 LAETIPQFVWVARADGLSEYHNQRWYDYTNTTPEQ---GFSDRWVQFVHPE-DRQRVLEA 317 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 T A R + ++ + G + D + Sbjct: 318 WYTSVQTGTPYEAEFRFRNGRT--GEYRWFLARAMPFKDEQGNIVRWFGTFTDIHDKKQT 375 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FL 501 + ++ + + +L++ G+A+ + G I N A +++ GY E++ Sbjct: 376 ETRLRLSEARYQRLLDSNIIGLALGDIYGHIYEANEAFARMIGYTQEEVRAGLIRWDTIT 435 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHD 560 + L E+ L + EK K+ + + + +L + + D Sbjct: 436 PPEYRYLDEKALKELQELGVCHPFEKE--YQRKDGSRVPVIVGAARLAEADGKIISFIVD 493 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE K+ + K +F++ SHE++TPLTA+ + ++ Sbjct: 494 ISERKELE--------------KRKDEFVSLASHELKTPLTALKMLLYQL-RKKSKQEEY 538 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + ++ + ++NDLLD+SKI+ G+ + EP+ LD + E + +Q Sbjct: 539 QDVTRILSRMEAQVTTLTQLINDLLDVSKIQMGRFDYADEPIDLDTVIQEVVETLQQTTT 598 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + + + I+AD R + Q+ NI+SNAI ++P + I + + N ++R Sbjct: 599 TQTLRLHGAVHQC---IVADKRRLAQVFTNIISNAIKYSPQADSVDIWVSASQN-TAVIR 654 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+D GVG+ + F + + G G+GL +AK +V G + S Sbjct: 655 VQDYGVGIPEELQSTVFERFNRGSYGASEKVFPGLGMGLYIAKEIVKHYGGTITVESAEG 714 Query: 800 KGTLIEIIFP---------LYDTSHPHD 818 +GT + P + T+ PH+ Sbjct: 715 RGTTFTVSLPGVDGRACGTVSVTAPPHE 742 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 80/276 (28%), Gaps = 22/276 (7%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 +H + ++ +D P V +FYAN + + + Sbjct: 1 MASHKHIEDVSPSLDDRVIHILDLLPDALLMVDQENTIFYANATAEAMAGATRGAFLGKN 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + P+ T ++ + + P + Sbjct: 61 IW------QCPNTPRVINAPLYNTFFQATQTHTPLQVEYVSPLTHTWRHVHIAPTAEGA- 113 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVS 482 + + + + QL +I + GIAI+ +GI+L N+ Sbjct: 114 --------MVHFHETTLYTMLQDALFQSEQLRQAIADGVPAGIAILTADGIVLEINKVPL 165 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSL 541 + +ED++ KP + S M L + + + K+ L Sbjct: 166 ENAQVQLEDVVGKPLADAPWWASSSAMQQRLHDAVAQAGKGEVVRFDARVYPKKVGEREL 225 Query: 542 RIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573 + I ++ + D++E K+ + +L Sbjct: 226 EVTITPHLNANQEVTYLLYTGFDVTERKRAEAELRF 261 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 61/269 (22%), Gaps = 10/269 (3%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T +E F +F W A G + ++ + R Sbjct: 250 TERKRAEAELRFLAETIP-QFVWVARADGLSEYHNQRWYDYTNTTPEQGFSDRWVQFVHP 308 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + T Y + T Y A+P R FG Sbjct: 309 EDRQRVLEAWYTSVQTGTPYEAEFRFRNGRTGEYRWFLARAMPFKDEQGNIV--RWFGTF 366 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKN 238 + + ++ L + ++ I+ ++ Sbjct: 367 TDIHDKKQTETRLRLSEARYQRLLDSNIIGLALGDIYGHIYEANEAFARMIGYTQEEVRA 426 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + + L + L P ++++ + ++ L + Sbjct: 427 GLIRWDTITPPEYRYLDEKALKELQELGVCHPFEKEYQRKDGSRVPVIVGAARLAEADGK 486 Query: 299 SFEY-LSHRNHPSLSAYFDEGENLTPETV 326 + + L DE +L + Sbjct: 487 IISFIVDISERKELEKRKDEFVSLASHEL 515 Score = 45.8 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 5/124 (4%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 IL+ D + ++++E I N + G L K Y T Sbjct: 21 ILDLLPDALLMVDQENTIFYANATAEAMAGATRGAFLGKNIWQCPNTPRVINAPLYNTFF 80 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + L+ + + I + + H+ + + ++ L +++ Sbjct: 81 QATQTHTPLQVEYVSPL-THTWRHVHIAPT----AEGAMVHFHETTLYTMLQDALFQSEQ 135 Query: 577 IAEK 580 + + Sbjct: 136 LRQA 139 >gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1087 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 136/807 (16%), Positives = 266/807 (32%), Gaps = 85/807 (10%) Query: 65 TNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVS 122 T E+ F + D I + G ++IG RL D+ Sbjct: 154 TEKALRESEERFQIALLHSPAVVFAKDRDLRFTWIYNPPF----GLSPDEIIGHRLQDLF 209 Query: 123 DILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 D I +++ + + PI D+A + + +G G Sbjct: 210 KQGEDDIQESIARTVIETGRSARLEA---PIRVHGEITWWDIALEQTRDEHGQATGIIGV 266 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLR--MKN 238 A + ++KF + S+ E +++ Sbjct: 267 AF--NITDRMKAEASLRESEEKFRKIFSSCPDPISISTLEDGRYIEVNDAFTRTSGFLRD 324 Query: 239 KVS---SLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 +V SL + + L + + + Sbjct: 325 EVIGKSSLDLGVWRAPEDRQQVIDKLKDKGSLRNFVSKRRTKAGKARTVLLSTEILEIAG 384 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353 + + E V+ P + Y NP+F +T Sbjct: 385 QPCLLSVSKDITLLKKRESELRKREADYRSLVEHSPDSIVRFDRKLRRIYINPAFERVTG 444 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + +T L N++ L T + L + + + L Sbjct: 445 ARQECSLNKTPSETT-----GLPVNSSAFEDTLREIFETGVPKEIDLSYLNPSGQRILHC 499 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL------EATSDGIAI 467 +P + E I + + + + M+++ +L ++L E+T D I Sbjct: 500 WLVPEFGHDGQVET--VLSIAHDITEHKQAEASMQLQQDRLETLLRLSQMTESTEDEILG 557 Query: 468 INREGIILSTNRAVSKLFGYPVEDI----------LRKPFTVFLEQNTPSVMNHYLT-EI 516 E I T L ++ + V + + ++ L Sbjct: 558 FILETSIRLTGSRFGFLGAVHRDNGFMTFPKCSIGTMEHCDVKILPESFALDRAGLWSNC 617 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-------CYSLTM---------HD 560 L + + ++ L + I +L + + D Sbjct: 618 LRQAKPSIINDYSAEHPAKKGLPPGHVPITRLLAVPLLDSGKVTFIAVVANKPDDYDQSD 677 Query: 561 ISE-------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 I++ ++ + A++ AE + K++FLA +SHE+RTPL ++G Sbjct: 678 ITQVTLLLEGMLAHLKRRRAEEGHKQAREEAEAANRAKTEFLANMSHELRTPLNGVLGMI 737 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+ +P+ ++ SG ++LDI+NDLLD++KIE+GK+ L + +L EA Sbjct: 738 EL----AGMSCADPKTHDFLRMAKDSGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREA 793 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726 + V + A K + ++P ++ DL +Q+ N++ NA+ FT G ++ Sbjct: 794 LDNTFYPVCMVAERKGLRCSLVVDQSVPEHLVGDLGRFRQVVTNLVGNAVKFTEKG-EVN 852 Query: 727 ISTTH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +S T + ++ RV+DTG+G+ F Q+ S + GTGLGL + Sbjct: 853 LSVMRIPHPFATDSVQIRFRVKDTGIGIPQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAI 912 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ +V+ G + S KG+ Sbjct: 913 SRNLVNLMGGDISVVSEEGKGSTFTFT 939 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 65/515 (12%), Positives = 143/515 (27%), Gaps = 29/515 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKR----- 139 W DA LK +++ +G + L DV+ L ++P+ L + Sbjct: 43 IWFCDAEANLKLLNKAARTELGLETSDLF-RPLDDVNAQLEILNPDGTPRSLEEAPLRLA 101 Query: 140 --QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 G+ + ++ T + A P+ + +G G+V Sbjct: 102 LKGQAVQGEERIRHLK-TGELRWREYRANPVRDERGDITGA--VGLVRDITGIKRTEKAL 158 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + +++F + +PP L + + + + E Sbjct: 159 RESEERFQIALLHSPAVVFAKDRDLRFTWIYNPPFGLSPDEIIGHRLQDLFKQGEDDIQE 218 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSA 313 E E ++ ++ ++ + + A Sbjct: 219 SIARTVIETGRSARLEAPIRVHGEITWWDIALEQTRDEHGQATGIIGVAFNITDRMKAEA 278 Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E E + CP P + G N +F + + + I G S+L Sbjct: 279 SLRESEEKFRKIFSSCPDPISISTLEDGRYIEVNDAFTRTSGFLRDEVI----GKSSLDL 334 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + + + + + + P + Sbjct: 335 GVWRAPEDRQQVIDKLKDKGSLRNF--VSKRRTKAGKARTVLLSTEILEIAGQPCLLSV- 391 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + ++ S++E + D I +R+ + N A ++ G E Sbjct: 392 --SKDITLLKKRESELRKREADYRSLVEHSPDSIVRFDRKLRRIYINPAFERVTGARQEC 449 Query: 492 ILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLP 549 L K + S L EI + + ++ L + + L L Sbjct: 450 SLNKTPSETTGLPVNSSAFEDTLREIFETGVPKEIDLSYLNPSGQRILHCWLVPEFGHDG 509 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 HDI+E KQ + + + E Sbjct: 510 QVETVLSIAHDITEHKQAEASMQLQQDRLETLLRL 544 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 26/296 (8%), Positives = 71/296 (23%), Gaps = 14/296 (4%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFL 349 + S E A NL ++ + NL N + Sbjct: 2 QVSRESYEQLRMELEVERARAEALA-CDRNLLTALIESLSDEIWFCDAEANLKLLNKAAR 60 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 ++ D ++ L+ R A Sbjct: 61 TELGLETSDLFRPLDDVNAQLEILNPDGTPRSLEEAPLRLALKGQAVQGEERIRHLKTGE 120 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + ++ + G+ + + ++ + + L + + + Sbjct: 121 LRWREYRANPVRDERGDITGAVGLVRDITGIKRTEKALRESEERFQIALLHSPAVVFAKD 180 Query: 470 REGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 R+ N FG ++I+ +Q + ++ LE Sbjct: 181 RDLRFTWIYNPP----FGLSPDEIIGHRLQDLFKQGEDDIQESIARTVIETGRSARLEAP 236 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 ++ I +++ +I++ + + L +++ K Sbjct: 237 IRVH---GEITWWDIALEQTRDEHGQATGIIGVAFNITDRMKAEASLRESEEKFRK 289 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 9/161 (5%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + E R + + L +++E+ SD I + E + N+A G Sbjct: 8 YEQLRMELEVERARAEALACDRNLLTALIESLSDEIWFCDAEANLKLLNKAARTELGLET 67 Query: 490 EDI------LRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 D+ + + TP + L L Q E+I T E + R Sbjct: 68 SDLFRPLDDVNAQLEILNPDGTPRSLEEAPLRLALKGQAVQGEERIRHLKTGELRWREYR 127 Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + DI+ K+ + L +++ + Sbjct: 128 ANPVRDERGDITGAVGLVRDITGIKRTEKALRESEERFQIA 168 >gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 180/381 (47%), Gaps = 13/381 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L + E D I I++++ + N++ S L G +EDI K Sbjct: 264 KRELIRSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ + T + SL ++ + K+ L + + + + + Y + Sbjct: 324 LQ-LDKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 383 VERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + + Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYL 498 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 +K + + N I L D ++QI N++SNA+ FT G + S T T Sbjct: 499 SICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHKGSITLNFSHTLTPK 558 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V ++V+DTG+G+ L+ +PF Q S + GTGLGL + K + D G Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 + S+ KGT ++ PL T Sbjct: 619 SVNSSEGKGTCFTLVLPLEIT 639 Score = 44.2 bits (103), Expect = 0.081, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143 + +D L I++ GN + G L V + I N L LK + Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKTGTSV 347 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +GT ID++ PI+ N + + + + K Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELEDKLIKAADK 403 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425 >gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta proteobacterium MLMS-1] Length = 970 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 120/681 (17%), Positives = 250/681 (36%), Gaps = 56/681 (8%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227 + F+G I+H L + + + + + S Sbjct: 198 VLDALVAFAGVEKILIIH-------KELLEREQWEAGMAMLGREADWDRLPDHAVIYASI 250 Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 P +R ++ A D+ + + L+ + + + + + L T Sbjct: 251 SLPEQAVRFICCDDPDHDHRATTDEIRIDGGAWRLMLTPVADVSGRRVGKLLLLLDVTGA 310 Query: 287 QYFGTLQNNSKESFEYLSH---------------RNHPSLSAYFDEGENLTPETVDKCPI 331 + Q + + + + A + E ++ P+ Sbjct: 311 KVEQRRQMLATGAGAVALLLALLGLTFVTLRRTDADILAQKAELRKSEERYRHISEEMPL 370 Query: 332 PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + + Y N ++ K+ D++ ++ + + + I + + Sbjct: 371 MICRFLPDYTISYVNRAYCDCFG-KNQDELIGVSFMTLIPVSDHDAVKATIGSLTV---- 425 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 ++ H + + + ++ + I + ++R ++ + Sbjct: 426 --DAPVVSQDHRAIMPDQTIVWHRWTDRALFDETGIIVAYQSIGEDITESRQAQQALRQA 483 Query: 451 VMQLCSILEATSDGIAII-------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 I+ GI + +R ++S N A ++ G V D++ K Sbjct: 484 HD----IISNMQIGIYVYHLEDIDDDRTLRMISANPATEEITGVKVIDVVGKTLDENFPS 539 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDIS 562 + E+ + E + + ++ + P + +I+ Sbjct: 540 LREMNLPQGFAEVARSGEARVYEDVVY---DDNWVVRACFSVMAFPLPGNHVGIAFENIT 596 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ + +L AK+ A+ + KS FLA ++HE RTP+ A+I + + + NPR Sbjct: 597 ERKKAEEELRTAKQQADSATLAKSRFLANMNHEFRTPMNAVINLTRLALEEE---ELNPR 653 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + R+G +L I+ND+LD SKIE+GK+ L P L + + + + A++K Sbjct: 654 QRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLIDDVVRPLSPNAHDK 713 Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR 740 I R A +P ++ D ++Q+ N+ N I FT G + + ++V L Sbjct: 714 AIKFRVELAEELPERLVGDATRLRQVLFNLADNGIKFTEQGEVLLKVQLLKRQGDQVTLA 773 Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G+G++ E ++ +PF Q +S R GTGLGL + K ++ + + S P Sbjct: 774 FMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGTGLGLAITKQLLVLMGSELEVESVP 833 Query: 799 AKGTLIEIIFPLY---DTSHP 816 +G+ L DTS P Sbjct: 834 GEGSNFAFTIQLALADDTSTP 854 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 33/389 (8%), Positives = 87/389 (22%), Gaps = 20/389 (5%) Query: 70 SENTFVFDPIPRTV---RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 SE + + RF + ++ G ++IG+ + + Sbjct: 357 SEERYRHISEEMPLMICRFL----PDYTISYVNRAYCDCFGKNQDELIGVSFMTLIPVSD 412 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 D L + I V ++ ++ G Sbjct: 413 HDAVKATIGSLTVDAPVVSQD-HRAIMPDQTIVWHRWTDRALFDETGIIVAYQSIG--ED 469 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + ++ S++ + + + S P +++ + Sbjct: 470 ITESRQAQQALRQAHDIISNMQIGIYVYHLEDIDDDRTLRMISANP---ATEEITGVKVI 526 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + + E + + ++ L Sbjct: 527 DVVGKTLDENFPSLREMNLPQGFAEVARSGEARVYEDVVYDDNWVVRACFSVMAFPLPGN 586 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + E + E + A FL ++ + L Sbjct: 587 HVGIAFENITERKKAEEELRTAKQQA------DSATLAKSRFLANMNHEFRTPMNAVINL 640 Query: 367 STL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 + L L+ +L+ + R+ + + L + +PF Sbjct: 641 TRLALEEEELNPRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLID 700 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + D + E +L Sbjct: 701 DVVRPLSPNAHDKAIKFRVELAEELPERL 729 >gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1055 Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 182/380 (47%), Gaps = 18/380 (4%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + R+++ + + A+ GIAI + +GIIL N+ +S++ GY ++++ Sbjct: 539 RRQVKKRTRELQESEERFKVLHNASFGGIAIHD-QGIILDCNQGLSEITGYSADELIGMN 597 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + +++ ++ + + D LG K + +R+ + +P+ + + Sbjct: 598 GLMLISEDSRDMVMSNI--LFGDDGP----YEALGLRKNGEEYPVRLEARNIPYKAKHVR 651 Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 DI+E K+ + L AK AE + KS+FLA +SHEIRTP+ ++G ++++ Sbjct: 652 VTEFRDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPINGVMGMLQLLETTP 711 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + Y + + N + ++ D+LD+S++E+GKM + P + + + L Sbjct: 712 L----DAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAPFQIQDIIDSVSGL 767 Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 + A K + + A +P +L D V+Q+ N++ NA+ FT G ++ T Sbjct: 768 FAVTARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTERGRVVMDITALPA 827 Query: 732 TSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V RV DTG+G+ L +PF Q+ NS +G GLGL + + +V Sbjct: 828 KDDGDYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGLGLSIVQRLVGLMG 887 Query: 790 GKFYIFSTPAKGTLIEIIFP 809 G I ST +GT ++ P Sbjct: 888 GTITIESTLGQGTSAHVVLP 907 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 60/234 (25%), Gaps = 24/234 (10%) Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 L L + ++ R + E E + Sbjct: 506 HPPSFAAILRNLAMVVAPLLLLLFGFFLWSWMLRRQVKKRTRELQESEERFKVLHNASFG 565 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-------GLSTLLDAPKLSDNNAIKPV 384 ++ G + N +T Y + + I + G ++ D+ + + Sbjct: 566 GIAIHDQGIILDCNQGLSEITGYSADELIGMNGLMLISEDSRDMVMSNILFGDDGPYEAL 625 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L + I + ++ F + + E + Q + E + ++ Sbjct: 626 GLR-KNGEEYPVRLEARNIPYKAKHVRVTEFRDITEQKRAEEALLQAKTQAETANQAKSE 684 Query: 445 RKMEIEVMQ---------LCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487 + + +LE T ++ E I A ++L Sbjct: 685 FLANMSHEIRTPINGVMGMLQLLETTP-----LDAEQASYIHMATEAANRLTRL 733 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 26/259 (10%), Positives = 65/259 (25%), Gaps = 19/259 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + + ++ L + G A ++IGM + D + + + + + Sbjct: 572 QGIILDCNQGLSEITGYSADELIGMNGLMLISE---DSRDMVMSNILFGDDGPYEALGLR 628 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 G V ++ +P +++ + F + + ++ K Sbjct: 629 KNGEEYPVRLEARNIPYKAKHVRVTEF------RDITEQKRAEEALLQAKTQAETANQAK 682 Query: 212 KGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + P + + A++ L T+ L Sbjct: 683 SEFLANMSHEIRTPINGVMGMLQLLETTPLDAEQASYIHMATEAANRLTRLLTDILDLSR 742 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + +E I + F N + E P + + Sbjct: 743 VEAGKMEIREAPFQIQDIIDSVSGLFAVTARNKNVALECRLAPGMPEVLVGDEMRVRQV- 801 Query: 324 ETVDKCPIPFFVYSHGNLF 342 + G + Sbjct: 802 -LFNLVGNALKFTERGRVV 819 >gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus elongatus BP-1] Length = 1353 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 118/753 (15%), Positives = 261/753 (34%), Gaps = 72/753 (9%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153 + ++ + G A ++IG + P I + +K+ + + Sbjct: 342 VIYVNPAFERMTGYRATEVIGKNCRFLQGSDRHQPGATAIRNAIKKGQSCRVVLRNYRKN 401 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G +LA PIY+ E + + G + + L ++ + + Sbjct: 402 G--QLFWNELAISPIYNEFGEITHYIGI-----QSDVTERQRAQLFLQQQVKRTLLLNRI 454 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + ++ ++ + + VS + ++ L+ Sbjct: 455 TEEIRQQIEREHICRTAVQQVGVTLNVSRCLLFVYQEN---APTPMELVAEYCGPGVPSV 511 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------D 327 + ++L Q ++ S + + + + + + E + + + Sbjct: 512 NECDLDLTQMRAPFLASVFASDEVFSCDDVQNDDRLAPLHAYCEALRVKSALIVRTAYRN 571 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + ++ + L K + + L + + Sbjct: 572 QANGLLILHQCDRQRRWTDAIQSLLKSVAAQVGIGLAQVQLLEQETRQRQQLQQQMQRAL 631 Query: 388 RSD------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R + T + + + + P P+ + Sbjct: 632 LLNQITEQIRQSLDTETVFATTVTQIGQAFGVNRCLIHRYDPGPPP-----HIPDVAE-- 684 Query: 442 INKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 ++ + I +E +A+++ + ++S N Sbjct: 685 ----YLQPGYASMRGISIPVENNPHALAVLSGDTAVVS-NDVTQ-----DPLLANAMHLC 734 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + + + + + + ++ + I + L + Sbjct: 735 HQFQIQSMLAIRTSYKGVPNGIIG------LHQCDRQRQWTPEEIEL--LEAVAAQVGIA 786 Query: 559 HDISEWKQEKN-----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 +E + + +L A+ AE + KS+FLA +SHEIRTP+ A++GF+ Sbjct: 787 IAQAELLRHEQQQRQLLAQQNQELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFT 846 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + N + ++ + ++G +L I+ND+LD SKIESGK+ L +P + E Sbjct: 847 NLLLDTPL----NEQQRDFLQTLHQAGEALLTIINDILDFSKIESGKLVLEQQPFDVREC 902 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726 V + +SL+ A EK + + + P +I D+ ++QI +N++ N I FT G Q+ Sbjct: 903 VEDVLSLLASKAQEKELELLYTCTPETPAQIKGDVTRLRQILVNLVGNGIKFTHEG-QVA 961 Query: 727 ISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + + + +V+DTG+G+ L++ KPF Q+ S GTGLGL ++K Sbjct: 962 VHVGVLKREGKDFLQFQVQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKR 1021 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + G + ST +GT L + P Sbjct: 1022 LCELMGGDMSVESTEGQGTTFTFTI-LAEGQKP 1053 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 57/187 (30%), Gaps = 18/187 (9%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + I T+ ++ ++ +++ I +GII Sbjct: 142 VQQQTLRTLARQVINELEIRHHLEVTQQQLAYIQQMSSLQEAVFNSSNHAIIATRTDGII 201 Query: 475 LSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------- 525 NRA + GYP +++ K F + L+ L + Sbjct: 202 TLMNRAAQQWLGYPASELVGKATPERFHDPQEMERYAQILSAQLGEPIPAGFETLVARAR 261 Query: 526 -----EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576 E+ ++ + + + + + + DI++ KQ + L ++ Sbjct: 262 RGLADEQEWTFVRRDGSCFPVSLSVTPMHDRQGQLIGFLESAVDITDKKQIEAALRLRER 321 Query: 577 IAEKESS 583 ++ Sbjct: 322 AIIASTN 328 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 23/249 (9%), Positives = 69/249 (27%), Gaps = 13/249 (5%) Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + + ++ + +P + A + + L+ L Sbjct: 206 RAAQQWLGYPASELVGKATPERFHDPQEMERYAQILSAQLGEPIPAGFETLVARARRGLA 265 Query: 271 EQED--FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 ++++ F + + + + + + +L + + L + Sbjct: 266 DEQEWTFVRRDGSCFPVSLSVTPMHDRQGQLIGFLESAVDITDKKQIEAALRLRERAIIA 325 Query: 329 CPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + + + Y NP+F +T Y++ + I G + + Sbjct: 326 STNGIVITDYRQPDNPVIYVNPAFERMTGYRATEVI----GKNCRFLQGSDRHQPGATAI 381 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + L + N N+F E GI+ + + + + Sbjct: 382 RNAIKKGQ--SCRVVLRNYRKNG-QLFWNELAISPIYNEFGEITHYIGIQSDVTERQRAQ 438 Query: 445 RKMEIEVMQ 453 ++ +V + Sbjct: 439 LFLQQQVKR 447 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 61/249 (24%), Gaps = 22/249 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + ++ + +G A +++G D ++ I + G TL Sbjct: 198 DGIITLMNRAAQQWLGYPASELVGKATPERFHDPQEMERYAQILSAQLGEPIPAGFETLV 257 Query: 151 PIEGTNLY--------------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 L P+ L+ P++ R + GF + A Sbjct: 258 ARARRGLADEQEWTFVRRDGSCFPVSLSVTPMHDRQGQLIGFLESAV--DITDKKQIEAA 315 Query: 197 GKRLDKKFSHLHE--IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + ++ + + + + R V + D Sbjct: 316 LRLRERAIIASTNGIVITDYRQPDNPVIYVNPAFERMTGYRATE-VIGKNCRFLQGSDRH 374 Query: 255 KTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + + + + N + + + N E Y+ ++ + Sbjct: 375 QPGATAIRNAIKKGQSCRVVLRNYRKNGQLFWNELAISPIYNEFGEITHYIGIQSDVTER 434 Query: 313 AYFDEGENL 321 Sbjct: 435 QRAQLFLQQ 443 >gi|317151760|ref|YP_004119808.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942011|gb|ADU61062.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 1180 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 101/542 (18%), Positives = 206/542 (38%), Gaps = 57/542 (10%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349 + +++ + L R S E D F++ G + AN L Sbjct: 381 RAETELRKTHQSLEERVRERTS-EVKETMEALRTVFDASHDAIFIHDVTGRILEANERML 439 Query: 350 LLTKYKSVDDIE------------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 + + + LS+ + + + D Sbjct: 440 KMYGLSADQIHDVSIARDISSRDNAVYRLSSYWRSVLNGEPQNFEWKARRPHDGAEFDVE 499 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L+ I ++ + ++ + + ++ ++ + + +I Sbjct: 500 VYLNRIVFHGQEAILTNVR-------------------DITVRKESENRIRQTLSKFEAI 540 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 LE + GIA+ ++ + + NR +++FG +++ L + + + ++ Sbjct: 541 LENSLMGIAM-SKGRRLATINRRGAEIFGRTPAELVGSELAALLS--SSNAVTDFVRTAR 597 Query: 518 -SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573 +L E + R+ K + S DI+ ++ ++ L Sbjct: 598 DALSQSGEFNTEQAFLDSEGNTVWCRMYAKAVDQGSLDKGVIWAWDDITAQRRAQDDLMR 657 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ AE + KS+FLA +SHEIRTP+ AI+G +++ +Y + S Sbjct: 658 AREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTDITLQTSLTT----EQRDYLKTVMDS 713 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 +L I+ND+LD+SKIE+ K+ L L V + +++ A +K + + Sbjct: 714 AQHLLGIINDILDLSKIEARKLCLDRVDFDLPSHVRTTLKGLEMQARQKGLDFVLELDQD 773 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-------EVILRVRDT 744 +P + D S++Q+ +N++ NAI FT G ++++S + V V DT Sbjct: 774 VPACVKGDPLSLRQVLMNLVGNAIKFTHKGSIRVLVSPAQAQPDADDQRTVGVRFEVADT 833 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + F Q GTGLGL + K ++ G + ST +G++ Sbjct: 834 GIGIPESFMGTIFQSFSQT----TRAFGGTGLGLAICKQLIGLMGGDISVTSTMGRGSVF 889 Query: 805 EI 806 Sbjct: 890 SF 891 Score = 37.7 bits (86), Expect = 9.1, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 77/255 (30%), Gaps = 36/255 (14%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 D G + E +E + K G A ++ DVS I ++ L ++ G+ Sbjct: 426 DVTGRILEANERMLKMYGLSADQI-----HDVSIARDISSRDNAVYRLSSYWRSVLNGEP 480 Query: 148 ------TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 P +G V + L + + + + V V + ++ Sbjct: 481 QNFEWKARRPHDGAEFDVEVYLNRIVFHGQEAILTN------VRDITVRKESENRIRQTL 534 Query: 202 KKFSHLHEIK---------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 KF + E + +++ + +IF + P + +++++L D Sbjct: 535 SKFEAILENSLMGIAMSKGRRLATINRRGAEIFGR---TPAELVGSELAALLSSSNAVTD 591 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHP 309 ++T + L S E ++ F N + Y + + + + Sbjct: 592 FVRTARDALSQSGE--FNTEQAFLDSEGNTVWCRMYAKAVDQGSLDKGVIWAWDDITAQR 649 Query: 310 SLSAYFDEGENLTPE 324 Sbjct: 650 RAQDDLMRAREDAEA 664 >gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 1026 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 101/651 (15%), Positives = 215/651 (33%), Gaps = 41/651 (6%) Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 R + + R + ++ + + + ++F S + + Sbjct: 397 HLRKIAELELRRQKDLCESIYNESADALFLVDPQTLLIADCNRRAVELFEADSKSELISI 456 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-----QYFGT 291 K L + + + + T+ + N K+ Sbjct: 457 KVNTLQLQPFTSDELAQITTQIQQKGVWNTEIQYLTRKGNLFWGNLAAKEVTMVCDRPSV 516 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY------SHGNLFYAN 345 + N + E + P ++ + Y + Sbjct: 517 ITNQVVYLVRVTDITERKRAETALLQSEARFQKIAAASPAQIYILAYYPDINQMRYEYIS 576 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + + + + LL ++ ++ L + A I Sbjct: 577 SGVQEIQELEPHQVL-----ADPLLTYQQVHPDDLALYNQLTTRSLKTLKPFAHEWRIIT 631 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + E + G+ + D + + + + G+ Sbjct: 632 PSGKVKWVRANSRPERRSNGE-IAWYGVVLDITDLKQAEAALRESEERFRHAFYDAPIGM 690 Query: 466 AIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 A++ + L N + ++ GY + + + + +T++LS + Sbjct: 691 ALLGLEDQQWLQANPMLREMLGYSELEFFSFQAFEIIHPEDIHRLENCITQVLSNQNPRV 750 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + ++ + + Y L + DI+E + + Sbjct: 751 -QVELRYLCNGGRIAWGLTSLSLVRDCQNQPLYYVLQIQDITEQQAIE------------ 797 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 K++F++ VSHE+RTPLTAI GF + N + + + + ++ + Sbjct: 798 --QIKNEFISIVSHELRTPLTAIQGFL-GLLNTGIYDNKSQKAKWMIQQALTNSDRLVRL 854 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 VND+LD+ ++ SG++ L E + + A+ VQ A I I S + A Sbjct: 855 VNDILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITI--SLTPTTACVWAS 912 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 + Q +N+LSNAI F+P I +S S+ V+ +V+D G G+ +LE + F Sbjct: 913 PDLIIQTLINLLSNAIKFSPHNSVITLSAQPQSD-WVLFKVQDQGRGIPANKLETIFERF 971 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 Q+ S GTGLGL + ++++ + G + ST +G+ P+ Sbjct: 972 QQVDISDARAKGGTGLGLAICQSIIQQHDGSIWAESTLGEGSTFYFTLPIS 1022 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 16/192 (8%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 +L + F + + E +I + ++ + SI ++D + Sbjct: 365 AGAIALGLFLTQFIIRSMEQLGQTSLALYNELHLRKIAELELRRQKDLCESIYNESADAL 424 Query: 466 AIINRE-GIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +++ + +I NR +LF E I K T+ L+ T + T+I Sbjct: 425 FLVDPQTLLIADCNRRAVELFEADSKSELISIKVNTLQLQPFTSDELAQITTQIQQKG-- 482 Query: 523 QTLEKITLGSTKEEKLLS----------LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 T++ L + + Y + + DI+E K+ + L Sbjct: 483 -VWNTEIQYLTRKGNLFWGNLAAKEVTMVCDRPSVITNQVVYLVRVTDITERKRAETALL 541 Query: 573 HAKKIAEKESSH 584 ++ +K ++ Sbjct: 542 QSEARFQKIAAA 553 >gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC BAA-548] Length = 1137 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 111/589 (18%), Positives = 218/589 (37%), Gaps = 22/589 (3%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 M + + + D ++ + + E + + + Sbjct: 406 FPREMSCREGAGVHNISRLADKVQQSFSAWIQEAFRTGQRMEKDYELEGAHRHVEFIPLP 465 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFFVYS-HGNLFYANPS 347 N+ E + L + + T++ + NP Sbjct: 466 KNNSFHEEAVMWISSDQTELHQAHRMVSRIAEQFRLTLESIGDGVIATDSEERITLLNPI 525 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 +T Y +++ L P+ S I + I + Sbjct: 526 AAQMTGYT-LEEARGKKLNEVFNIISYLDGRKVESPLTKALSTGKIIELANHTDLIARDG 584 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + + + + ++ + L + + Sbjct: 585 -TARHIADSAAPIRDVEGKIIGGVLVFRDVTEEYKKRDRLRTHSVILANAAKIAKFFYFQ 643 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + G + + + + F + R P +L + + L + Sbjct: 644 CDNTGRLTALSAQNYRAF----REEERVPLAEWLAPDDRQRFDGNWNRFLESGIGGDTSS 699 Query: 528 --ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 + K L + ++ + DI+E +++ KL A + A K Sbjct: 700 FSDVFAAGKSRFELRAEKSVNEINGKWEICGVIQDITELAEQQEKLQQALEQARAADRAK 759 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA VSHE+RTPL A+IGFSE+++ P EY I+ +GN +L+++ND+L Sbjct: 760 SYFLATVSHELRTPLNAVIGFSELLQGADVEP---QEQQEYLGSINFAGNALLNLINDVL 816 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+S++E+ ++ L PV + V E + + + A EK + ++ ++ N P + D +K Sbjct: 817 DLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAVEKNLSLQMTYTNLPPTLYLDDLRIK 876 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPF 760 QI LN+ NA+ FT GG + +S +I + DTG+G+ ++ + +PF Sbjct: 877 QILLNLTGNALKFTHDGG-VTVSAVFRLAEEAGQGTLIFSITDTGIGILPEKISQIFEPF 935 Query: 761 GQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q + R EG+GLGL ++K +V+ GK STP KG+ + Sbjct: 936 VQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSAESTPGKGSTFTVRL 984 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 33/303 (10%), Positives = 70/303 (23%), Gaps = 24/303 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQNT-- 142 D+ + ++ + G + G +L + +S + + + L Sbjct: 513 TDSEERITLLNPIAAQMTGYTLEEARGKKLNEVFNIISYLDGRKVESPLTKALSTGKIIE 572 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD-NDPRALGKRLD 201 T L +GT + I +A PI + G G + + L Sbjct: 573 LANHTDLIARDGTARH--IADSAAPIRDVEGKIIG--GVLVFRDVTEEYKKRDRLRTHSV 628 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + K + + R + +V Sbjct: 629 ILANAAKIAKFFYFQCDNTGRLTALSAQNYRAFREEERVPLAEWLAPDDRQRFDGNWNRF 688 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L S + + N +E + A E Sbjct: 689 LESGIGGDTSS-FSDVFAAGKSRFELRAEKSVNEINGKWEICGVIQDITELAEQQE---K 744 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + +++ A FL ++ + G S LL + Sbjct: 745 LQQALEQARAA------DR---AKSYFLATVSHELRTPLNAVIGFSELLQGADVEPQEQQ 795 Query: 382 KPV 384 + + Sbjct: 796 EYL 798 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 29/274 (10%), Positives = 71/274 (25%), Gaps = 14/274 (5%) Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + AG ++ + + + + ++ + + + L Sbjct: 280 MVSGQEQGYQAGSIARRIFSGESAAAIPVQEGEFHPVFDYPSLQRIGIDRKRLPAGTELL 339 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + F Q + + + ++ + I ++NR G Sbjct: 340 NPPVDFITRYQVEIISVLASLGLLLLLLLFRLIILARMKKRIAVLFNNLPLRICVVNRSG 399 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 IL + + + L + ++ E R + G+ Sbjct: 400 RILF--QHFPR--EMSCREGAGVHNISRLADKVQQSFSAWIQEAFRTGQRMEKDYELEGA 455 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-FLAR 591 + + + L D +E Q +S + D +A Sbjct: 456 HRHVEFIPL--PKNNSFHEEAVMWISSDQTELHQAHRMVSRIAEQFRLTLESIGDGVIAT 513 Query: 592 VSHE---IRTPLTA-IIGFSEVIKNQRFGPLGNP 621 S E + P+ A + G++ + G N Sbjct: 514 DSEERITLLNPIAAQMTGYT---LEEARGKKLNE 544 >gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 778 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G + + N ++ GY ++I+ K F+VF + Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I +S DIS+ + + L Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + ++AD + + Q+ LN+LSNAI + GQ+ I + V + V DTG G+ Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TPA+G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623 Query: 811 YDTSHP 816 P Sbjct: 624 VLVHAP 629 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E + P Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|16124840|ref|NP_419404.1| sensory box histidine kinase [Caulobacter crescentus CB15] gi|13421786|gb|AAK22572.1| sensory box histidine kinase [Caulobacter crescentus CB15] Length = 716 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 109/583 (18%), Positives = 223/583 (38%), Gaps = 36/583 (6%) Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 L E L+ S +++ ++ + + E L+ Sbjct: 5 RRRLGVEALELIRRGTSQNALLGKGFAVDVGASGSDLCLWASGSDGEAARELLTELASLV 64 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + D +++ P + G L +P++ + + Sbjct: 65 VELVADASPF---AMLEQAPDDLISHYDLTGRLLRVSPAWSRIIGGSVAEAAGRRTWD-- 119 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 AP+ A L R + ++ R+ ++ + + P N Sbjct: 120 -FIAPEDHPAVAAYYADLLR-EGAAPSSRLRM-RVRHVAGDIRVLESRPMPIRNAEGVVT 176 Query: 429 PQNGIEPEDVDT--------------RINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 I + + + + E +L + E+ D ++ G I Sbjct: 177 GFVDIARDITEQIETERRYQLALAQAHEARERAEASEWRLRLLAESAQDLTVQVDASGKI 236 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGS 532 L + + +L G F + + ++ D R +L+ Sbjct: 237 LYASSSADRL-GLANLAQEGASFMSLVHPDETERAATFIAGAFESRGDKRPSLDTELRFL 295 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + + + + T D+++ + L A+ AE KS F Sbjct: 296 SVDGDYRWMEGKGWLERDADGVPVALTSTFRDMTDRHSLEESLIAARVRAEAAVRAKSAF 355 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA ++HE+RTPLT++IGF+E I+ + P +P ++ I G +L +ND+LD S Sbjct: 356 LANMTHELRTPLTSVIGFAEQIQAE---PALSPTVRHASDRISAGGRALLSTINDILDFS 412 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQI 707 K+ESG +++ ++ ++E ++L+ + A+ K + + + + A D + V+Q+ Sbjct: 413 KLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQHVRQV 472 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 LN++ NAI FT GG + ++ + + + V DTG+G+ LE+ F Q+ ++ Sbjct: 473 LLNLIGNAIKFTEQGG-VTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFSQVDDTI 531 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R G+GLGL + + + +A G+ + ST +G+ + PL Sbjct: 532 ARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 574 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 24/252 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148 D G L +S + IG + G R D + DLL+ + Sbjct: 89 DLTGRLLRVSPAWSRIIGGSVAEAAGRRTWDFIAPEDHPAVAAYYADLLREGAAPSSRLR 148 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------------NDPR 194 + ++ +PI + +GF I ++ R Sbjct: 149 MRVRHVAGDIRVLESRPMPIRNAEGVVTGF--VDIARDITEQIETERRYQLALAQAHEAR 206 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-------SSLTEYY 247 + + + L E + + I S L + N S + Sbjct: 207 ERAEASEWRLRLLAESAQDLTVQVDASGKILYASSSADRLGLANLAQEGASFMSLVHPDE 266 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + + SL + F +++ + + ++ S Sbjct: 267 TERAATFIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTSTFR 326 Query: 308 HPSLSAYFDEGE 319 + +E Sbjct: 327 DMTDRHSLEESL 338 >gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 1298 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 125/732 (17%), Positives = 260/732 (35%), Gaps = 36/732 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + +K ++ T G + +G ++ + L+ ++ Sbjct: 183 LDNNFNVKTVNTAFENTYGTSSEA-LGKNFREILSRGGNPVSLSEDHLMDAGEYFFTSRL 241 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G+ + I+ ++R F + +R +++F Sbjct: 242 N---SGSGETMVIEWLIKRNHNRT------EIFCFGRNVTRLIAEKQKLERSERRFRSFF 292 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E G S+ + +I + + + +L + + L + Sbjct: 293 ENAIGLMSMHDMEGNILAVNEKGRETLKYSAEETQKLNLRDLVPKDNWQLLQGYLERIAE 352 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--GENLT 322 + + N + + +S D + + Sbjct: 353 YKEDSGYMMLCAKDGEQLVWMYHNLVEIDENGRPYVVSTALNVTEKMSLEKDLIYTKKIL 412 Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 +T + + V + + + + K + E+A L + S Sbjct: 413 EQTSAAARVGGWEVNLQNGKTFWSQTTKEIHKVADDFEPELASALDFYTEE---SRERVS 469 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 L + + + I + GI + Sbjct: 470 ALFDRAVKTGERYDDEFELSQ---PDGSRIWVRAIGIPEFEHGVC-KKVFGIIQNIDIAK 525 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++E + L S ++ +A+ + LS ++ + F V + + Sbjct: 526 RTYLELEKKEAMLQSFVKDVPVAVAMFDHNLNYLSVSKWWTDEFSMDVNAMKGRNIFEVS 585 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMH 559 + Y+ + + + + + + ++ + L +++ Sbjct: 586 PNVPEERVKMYMGALQGKSYKSENLVLPVPGKTQVQHYNMEVSPWFLANKVIGGVIVSVQ 645 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +I+E + +L +A+++A + S KS+FLA +SHEIRTPL +IGFS+++ Sbjct: 646 NITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL---- 701 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N +Y NYI+ SG +L I+ND+LD SKIESGKM L + + + V + I+++ + Sbjct: 702 NEMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVILFQS 761 Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734 +K + + + +P IL D VKQI +N+L NA+ FT G +I + Sbjct: 762 QKKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLRG-EIELKVQKLRMDAER 820 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + VRDTG+G+ + ++ F Q +S + GTGLGL ++ ++ + Sbjct: 821 IALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTSLSL 880 Query: 795 FSTPAKGTLIEI 806 STP +G+ Sbjct: 881 KSTPGEGSEFYF 892 Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 5/165 (3%) Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + I ++ E + E V ++ ++ + T++ I +++ Sbjct: 128 LCVIDYKPRTLSDEQIAALSKLAEAVSRQLMAKRKAAHAEYYEQLFTVTNNLICVLDNNF 187 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + + N A +G + L K F L + V + + + + + Sbjct: 188 NVKTVNTAFENTYGTSS-EALGKNFREILSRGGNPVSLSEDHLMDAGE----YFFTSRLN 242 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + + + + +IK+ + +++ EK KL +++ Sbjct: 243 SGSGETMVIEWLIKRNHNRTEIFCFGRNVTRLIAEKQKLERSERR 287 >gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 554 Score = 340 bits (871), Expect = 8e-91, Method: Composition-based stats. Identities = 106/383 (27%), Positives = 186/383 (48%), Gaps = 18/383 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R + +L I+E D GI ++R G + + N ++ GY ++I+ K F+V Sbjct: 34 AERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSV 93 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555 F + + + + K+ ++I +S Sbjct: 94 FYLPEECPQHPDM--ALREATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFS 151 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DIS+ + + L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ Sbjct: 152 KITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL----- 206 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +I R+G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV Sbjct: 207 DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLV 266 Query: 676 QLYANEKRILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 A + I ++ + + ++AD + + Q+ LN+LSNAI + GQ+ I + Sbjct: 267 SPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSD 325 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V + V DTG G+ + + KPF ++ EGTGLGL L+K+M++ G Sbjct: 326 E-RVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLS 382 Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816 + +TPA+G + PL P Sbjct: 383 VQNTPAEGCRFILELPLVLVHAP 405 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 59 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 117 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 118 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 175 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 176 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 233 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E + P Sbjct: 234 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 289 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 290 VADRQRLIQVLLNLLSNAI 308 >gi|302392020|ref|YP_003827840.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] gi|302204097|gb|ADL12775.1| multi-sensor signal transduction histidine kinase [Acetohalobium arabaticum DSM 5501] Length = 723 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 103/510 (20%), Positives = 212/510 (41%), Gaps = 29/510 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 E E +D P F + S G N + L+ Y + + Sbjct: 202 DITERKKTEQTLKESEAKFRSYIDNAPYGVFVINSRGEYIEVNEAACELSGYSKEELL-- 259 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + ++ + S + ++ + A N Sbjct: 260 NMSIEDVTVDRQKAKRHLVQLL-------EVGELSLEIMLLKKDGSKFHANINAVKASEN 312 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + G + + + K++ E +L + T + ++R G + NR Sbjct: 313 RL------LGFVEDITARKEAEEKVKEERDKLQKYFDITEVIVVNLDRTGKVELLNRKGC 366 Query: 483 KLFGYPVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ G E++L + F+++ + + +L ++ +I S +E K+L Sbjct: 367 EILGVKEEEVLGHDWTENFVKEEDSAETKQIINSLLEGEIINDKNRIITKSGEERKILWH 426 Query: 542 RIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++K + T DI+E + K K+++ + K +F A +SHE RTPL Sbjct: 427 NAVLKDEQSQMNKILSTGIDITEVESLKEKVAY--------NKLKMEFFANISHEFRTPL 478 Query: 601 TAIIGFSEVIK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 I ++++ ++ P + + +Y I ++G +L + N+L+DI+K++SG L Sbjct: 479 NLIFSAQQMLEMYQKKLEPEQSSKMGKYTTIIKQNGRRLLRLANNLIDITKMDSGSFELE 538 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E ++ V + V + K + I D +++++ LN+LSNA+ F Sbjct: 539 LENCNIVSLVRKVACSVAEHIEYKELEFEFDSEIEEKIIACDPFNIERVILNLLSNAVKF 598 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 T G ++ ++ +T +V++ V+DTG+G++ + E K FGQ S EGTG+GL Sbjct: 599 TDIGDKVSVNI-YTEEGKVLISVKDTGIGISQEKQELIFKRFGQADKSFTRSNEGTGIGL 657 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + K++V+ + G+ + S G+ I Sbjct: 658 SIVKSIVELHNGQISVESEEGVGSEFIIEL 687 Score = 97.8 bits (242), Expect = 8e-18, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 83/281 (29%), Gaps = 35/281 (12%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 S ++ + + F + + G + AN S+ + Y + +E+ Sbjct: 85 EQSLELTMEKDKLNKILYTTMDGFLILNTEGEIIEANKSYQEMIGYSREELLEMTIDDID 144 Query: 369 LLDAPKLSDNNAIKPVM---------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + ++ + + + I I E Sbjct: 145 ITKNKEEVKDHMERIMTDEQDRFETKCSCKNGEVIDVEVSTTYIDDLEEPIFV------- 197 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + + + + ++ ++ + S ++ G+ +IN G + N Sbjct: 198 ------------SFDRDITERKKTEQTLKESEAKFRSYIDNAPYGVFVINSRGEYIEVNE 245 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A +L GY E++L +L ++L + + K+ Sbjct: 246 AACELSGYSKEELLNMSIEDV--TVDRQKAKRHLVQLLEVGELSL---EIMLLKKDGSKF 300 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 I K + + DI+ K+ + K+ + +K Sbjct: 301 HANINAVKA-SENRLLGFVEDITARKEAEEKVKEERDKLQK 340 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 5/137 (3%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + ++ +E +L IL T DG I+N EG I+ N++ ++ GY E++L Sbjct: 80 RERLKEQSLELTMEKDKLNKILYTTMDGFLILNTEGEIIEANKSYQEMIGYSREELLEMT 139 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCY 554 + ++ I++ + + T S K +++ + + + + Sbjct: 140 IDDIDITKNKEEVKDHMERIMTDEQDR---FETKCSCKNGEVIDVEVSTTYIDDLEEPIF 196 Query: 555 SLTMHDISEWKQEKNKL 571 DI+E K+ + L Sbjct: 197 VSFDRDITERKKTEQTL 213 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 35/352 (9%), Positives = 89/352 (25%), Gaps = 14/352 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ++ G + E ++ + IG +++ M + D+ + + + + +T Sbjct: 111 LNTEGEIIEANKSYQEMIGYSREELLEMTIDDIDITKNKEEVKDHMERIMTDEQDRFETK 170 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + ++++ Y + E F F K + KF Sbjct: 171 CSCKNGE--VIDVEVSTT--YIDDLEEPIFVSFD--RDITERKKTEQTLKESEAKFRSYI 224 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + V + + L +K L + K L+ E Sbjct: 225 DNAPYGVFVINSRGEYIEVNEAACELSGYSKEELLNMSIEDVTVDRQKAKRHLVQLLEVG 284 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E + ++ E + + D Sbjct: 285 ELSLEIMLLKKDGSKFHANINAVKASENRLLGFVEDITARKEAEEKVKEERDKLQKYFDI 344 Query: 329 CPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + + G + N + K + + + + K D+ K ++ Sbjct: 345 TEVIVVNLDRTGKVELLNRKGCEILGVKEEEVLGHDWTENFV----KEEDSAETKQIINS 400 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + I R+ I + E + ++ + + + Sbjct: 401 LLEGEIINDKNRI--ITKSGEERKILWHNAV-LKDEQSQMNKILSTGIDITE 449 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 86/280 (30%), Gaps = 20/280 (7%) Query: 42 ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101 E P SF++ D + + +SE F + I++ G E++E Sbjct: 192 EEPIFVSFDR----DITERKKTEQTLKESEAKFRSYIDNAPYG-VFVINSRGEYIEVNEA 246 Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161 + G +++ M + DV + H+ LL+ + L +G+ + Sbjct: 247 ACELSGYSKEELLNMSIEDV-TVDRQKAKRHLVQLLEVGE-LSLEIMLLKKDGSKFH--- 301 Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221 + + GF V + K K +I + Sbjct: 302 -ANINAVKASENRLLGF-----VEDITARKEAEEKVKEERDKLQKYFDITEVIVVNLDRT 355 Query: 222 Y--DIFSQQSPPPHLRMKNKVSSLTEYY--AHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277 ++ +++ + +V ++D +T++ E + ++ T Sbjct: 356 GKVELLNRKGCEILGVKEEEVLGHDWTENFVKEEDSAETKQIINSLLEGEIINDKNRIIT 415 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + L++ + + LS + E Sbjct: 416 KSGEERKILWHNAVLKDEQSQMNKILSTGIDITEVESLKE 455 >gi|301100834|ref|XP_002899506.1| hybrid signal transduction histidine kinase, putative [Phytophthora infestans T30-4] gi|262103814|gb|EEY61866.1| hybrid signal transduction histidine kinase, putative [Phytophthora infestans T30-4] Length = 4070 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 127/740 (17%), Positives = 254/740 (34%), Gaps = 63/740 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143 + +D +G + + + +T +++G L + + P + + + T Sbjct: 2757 IFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISNEYKMPVRSVLEKAFEGIETA 2816 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ + E G G G RL Sbjct: 2817 NFEFPLITKAGR--RVEILLNATPRYNEHGEVMGMVGIG--QDITERIAQEQEYTRLIDT 2872 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + ++ + ++ + L Sbjct: 2873 ANAPIF----GVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISEEYKVPVRSVLEK 2928 Query: 264 SEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E +F I + N E + + ++ Sbjct: 2929 AFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGIGQDITERIAQEQE--- 2985 Query: 322 TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +D P F + N +T Y + + L +P+ A Sbjct: 2986 YSRLIDTANAPIFGVDANMCVNIWNRKAAQITNYSIGEVMGEN--LVETFISPEFRPIVA 3043 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 +L ++ A+ I + + + + GI + D Sbjct: 3044 E---VLSQALTGVETANFEFPLITRPGTRIEIL-LNATPRYDLNGNIVGVVGIGQDITDR 3099 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + E +++ + I I+ G I N+ + ++ GY ++L Sbjct: 3100 ------IAQEHEYFR-LIDTANAPIFGIDNNGRINEWNQKIEEITGYHKSNVLGLSLVHT 3152 Query: 501 LE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555 + + L + L E +TK L L + Sbjct: 3153 FVTPDCRQQVRQLLNQALIG--IDVGEMELPMTTKRGVFLLLLVNASSKKDMHGNIRGVI 3210 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D + K + + K +FLA SHE+RTPL ++G E++K Q Sbjct: 3211 GVGQDYTARKHME--------------AAKVNFLASFSHELRTPLNGVLGMLELLKEQPL 3256 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + Y + SG+L+L+++ND+LD+SKIE+G + + P + + + +I + Sbjct: 3257 ----DKSIERYVHMAYVSGSLLLNLINDILDLSKIEAGHLEISTAPFQMHDLLDYSIEIF 3312 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + A E+ + + +N+P+ ++ D+ ++Q+ LN+LSNAI FT G I ++ + + Sbjct: 3313 KFKAKERGLKLELKCGDNVPKAVIGDVVRLRQVLLNLLSNAIKFTNEGS-ITVACSVVHS 3371 Query: 735 EEV-------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E+ + +V DTG+GM E + F ++ ++Q G+GLGL + K + + Sbjct: 3372 PELPPQFKKLLFQVIDTGIGMDAEEKMRLFSLFTKLERTRQNNPTGSGLGLAICKQLAEL 3431 Query: 788 NMGKFYIFSTPAKGTLIEII 807 G + S G+ Sbjct: 3432 MDGSIDVDSELGVGSNFFFT 3451 Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats. Identities = 61/505 (12%), Positives = 138/505 (27%), Gaps = 36/505 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 + +D G + + + + ++G L + +S+ + + + + T Sbjct: 1317 IFGVDTDGRVNIWNRKAADIMQYTNEDVLGKNLVEQFISEEYRVAVRSVLEKAFEGVETA 1376 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ E G G G RL Sbjct: 1377 NFEFPLITRAGR--RVEILLNATPRYNERGEVMGMVGIG--QDITERIAQEQEYSRLIDT 1432 Query: 204 FSHLHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + K + + + + S + + K + Sbjct: 1433 ANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAEFISEEYKVPVRSVLEKAFEG 1492 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + E L T + N E + + ++ Sbjct: 1493 VETANFEFPL------ITKAGRRVEILLNATPRYNEHGEVMGMVGIGQDITERIAQEQE- 1545 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +D P F V +G++ N + +Y + D + + + K+ Sbjct: 1546 --YTRLIDTANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPVR 1603 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L ++ A+ I + + N+ E M GI + Sbjct: 1604 SV-----LEKAFEGIETANFEFPLITKAGRRVEIL-LNATPRYNERGEVMGMVGIGQDIT 1657 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497 + + + +++ + I ++ G + NR + + Y ED+L K Sbjct: 1658 ERI-------AQEEEYSRLIDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLV 1710 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 F+ + + L + E + + L + Sbjct: 1711 AEFISKEYKVPVRSVLEKAFEGVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMV 1770 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580 DI++ ++ + + A Sbjct: 1771 GIGQDITDRIAQEQEYTRLIDSANA 1795 Score = 143 bits (360), Expect = 2e-31, Method: Composition-based stats. Identities = 64/506 (12%), Positives = 143/506 (28%), Gaps = 38/506 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143 + +D +G + + + +T +++G L + + P + + + T Sbjct: 1917 IFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISKEYKVPVRSVLEKAFEGVETA 1976 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ + E G G G RL Sbjct: 1977 NFEFPLITKAGR--RVEILLNATPRYNEHGEVMGMVGIG--QDITERIAQEQEYTRLIDT 2032 Query: 204 FSHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + +I + ++ DI ++ + ++ + Sbjct: 2033 ANAPIFGVDINGHVNIWNRKAADIMQ-------YSNEDVLGKDLVVEFISNEYKVPVRSV 2085 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + E +F I + N E + + ++ Sbjct: 2086 LEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEQE 2145 Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 +D P F V +G++ N + +Y + D + + + K+ Sbjct: 2146 ---YSRLIDTANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPV 2202 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L ++ A+ I + + N+ E GI + Sbjct: 2203 RSV-----LEKAFEGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGEVKGMVGIGQDI 2256 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + +++ + I ++ G + NR + + Y ED+L K Sbjct: 2257 TERI-------AQEQEYSRLIDTANAPIFGVDINGHVNIWNRKAADIMQYTNEDVLGKDL 2309 Query: 498 -TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554 F+ + + L + E + + L + Sbjct: 2310 VAEFISKEYKVPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGM 2369 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + S A Sbjct: 2370 VGIGQDITERIAQEEEYSRLIDTANA 2395 Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats. Identities = 63/501 (12%), Positives = 136/501 (27%), Gaps = 28/501 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143 + +D +G + + + +T +++G L + + P + + + T Sbjct: 760 IFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISEEYKVPVRSVLEKAFQDVETA 819 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ + G G G V R+ Sbjct: 820 NFEFPLITKAGR--RVEILLNATPRYNEQGQVMGMVGIG--QDITVRMAQEKEKNRMIHS 875 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + V + M + + H+D+V + L Sbjct: 876 ANAPIFGVDQDGLVNIWNLKVAEITQFSSEEVMGQDLVNRFVAEDHRDEVNFNLRKAL-- 933 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + T + + + F + ++ Sbjct: 934 EGKPTGNFDFPLITKTGRRVEILLNATPRYDELGQIFGVTGIGQDITERIAQEQE---YI 990 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +D P F V S G + N + +Y + + L++ D Sbjct: 991 RLIDTANAPIFGVNSEGRVNIWNKKAASIMQYTTDAVMGEK-----LVEKYITKDYQEAV 1045 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 +L + A+ I + + N+ + GI + D Sbjct: 1046 SNVLSEALNGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGAVIGMVGIGQDITDRI- 1103 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFL 501 + + +++ + I ++ G + NR + + Y ED+L K F+ Sbjct: 1104 ------AQEQEYTRLIDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLVAEFI 1157 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559 + + L + E + + L + Sbjct: 1158 SEEYKVPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQ 1217 Query: 560 DISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + S A Sbjct: 1218 DITERIAQEEEYSRLIDTANA 1238 Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats. Identities = 56/504 (11%), Positives = 135/504 (26%), Gaps = 34/504 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143 + +D +G + + + + ++ L + + P + + + T Sbjct: 1437 IFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAEFISEEYKVPVRSVLEKAFEGVETA 1496 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ + E G G G RL Sbjct: 1497 NFEFPLITKAGR--RVEILLNATPRYNEHGEVMGMVGIG--QDITERIAQEQEYTRLIDT 1552 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + ++ + ++ + L Sbjct: 1553 ANAPIF----GVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPVRSVLEK 1608 Query: 264 SEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E +F I + N E + + +E Sbjct: 1609 AFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEEE--- 1665 Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +D P F V +G + N + +Y + D + + K+ + Sbjct: 1666 YSRLIDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKVPVRSV 1725 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L ++ A+ I + + N+ E M GI + D Sbjct: 1726 -----LEKAFEGVETANFEFPLITRAGRRVEIL-LNATPRYNERGEVMGMVGIGQDITDR 1779 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + ++++ + I ++ G + N+ +++ Y D++ + Sbjct: 1780 I-------AQEQEYTRLIDSANAPIFGVDVNGCVNIWNKKAAEITQYTPNDVMGENLVEK 1832 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556 + + +T TK + + + + Sbjct: 1833 FITEDYRKAVGLVLSKALDGV-ETANFEFPLMTKAGRRVEILLNATSRFNEHGEVIGMVG 1891 Query: 557 TMHDISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + + A Sbjct: 1892 IGQDITERIAQEQEYTRLIDTANA 1915 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 59/503 (11%), Positives = 135/503 (26%), Gaps = 32/503 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 + +D +G + +++ + ++G L + +++ + L T Sbjct: 1797 IFGVDVNGCVNIWNKKAAEITQYTPNDVMGENLVEKFITEDYRKAVGLVLSKALDGVETA 1856 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A ++ + E G G G RL Sbjct: 1857 NFEFPLMTKAGR--RVEILLNATSRFNEHGEVIGMVGIG--QDITERIAQEQEYTRLIDT 1912 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + + + + + L Sbjct: 1913 ANAPIF----GVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISKEYKVPVRSVLEK 1968 Query: 264 SEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + E +F I + N E + + ++ Sbjct: 1969 AFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVMGMVGIGQDITERIAQEQE--- 2025 Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 +D P F V +G++ N + +Y + D + + + + K+ + Sbjct: 2026 YTRLIDTANAPIFGVDINGHVNIWNRKAADIMQYSNEDVLGKDLVVEFISNEYKVPVRSV 2085 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L ++ A+ I + + N+ E M GI + + Sbjct: 2086 -----LEKAFEGIETANFEFPLITKAGRRVEIL-LNATPRYNERGEVMGMVGIGQDITER 2139 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TV 499 + + +++ + I ++ G + NR + + Y ED+L K Sbjct: 2140 I-------AQEQEYSRLIDTANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAE 2192 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557 F+ + L + E + + L + Sbjct: 2193 FISNEYKVPVRSVLEKAFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGI 2252 Query: 558 MHDISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + S A Sbjct: 2253 GQDITERIAQEQEYSRLIDTANA 2275 Score = 131 bits (330), Expect = 5e-28, Method: Composition-based stats. Identities = 53/506 (10%), Positives = 135/506 (26%), Gaps = 38/506 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143 + +D +G++ + + + ++G L + + P + + + T Sbjct: 2277 IFGVDINGHVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKVPVRSVLEKAFEGIETA 2336 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ E G G G RL Sbjct: 2337 NFEFPLITKAGR--RVEILLNATPRYNERGEVMGMVGIG--QDITERIAQEEEYSRLIDT 2392 Query: 204 FSHLHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + K + + + S + + K + Sbjct: 2393 ANAPIFGVDINGCVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKEPVRSVLEKAFEG 2452 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + E L T + N + + + ++ Sbjct: 2453 VETANFEFPL------ITKAGRRVEILLNATPRYNERGDVMGMVGIGQDITERIAQEQE- 2505 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +D P F V ++ + N +T + S + + + T++ Sbjct: 2506 --YSRLIDTANAPIFGVDTNMRINIFNRKAQQITNFSSEELVGEMY-VETIISQEF--KA 2560 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + L T + + + +Q + + GI + Sbjct: 2561 VTYDIMCKALQGNETASFELALTTKT---GRKVNILLNATARFDQHGQIVGVVGIGQDIT 2617 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + + ++++ + I ++ G + N+ +++ Y D++ + Sbjct: 2618 DRI-------AQEQEYTRLIDSANAPIFGVDVNGCVNIWNKKAAEITQYTPNDVMGENLV 2670 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCY 554 + +T TK + + + + ++ Sbjct: 2671 EKFITEDYREAVGLVFSKACEGT-ETANFEFPLMTKAGRRVEILLNATSRFNEIGEVMGV 2729 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + + A Sbjct: 2730 VGIGQDITERIAQEQEYTRLIDTANA 2755 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 58/505 (11%), Positives = 135/505 (26%), Gaps = 36/505 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143 + +D +G + + + + ++G L + + +P + + + T Sbjct: 2397 IFGVDINGCVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKEPVRSVLEKAFEGVETA 2456 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+ + G G G RL Sbjct: 2457 NFEFPLITKAGR--RVEILLNATPRYNERGDVMGMVGIG--QDITERIAQEQEYSRLIDT 2512 Query: 204 FSHLHEIKKGHSSVE----KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + K + + S D + K + Sbjct: 2513 ANAPIFGVDTNMRINIFNRKAQQITNFSSEELVGEMYVETIISQEFKAVTYDIMCKALQG 2572 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 S E +L + + + + + + ++ Sbjct: 2573 NETASFELALTTKT------GRKVNILLNATARFDQHGQIVGVVGIGQDITDRIAQEQE- 2625 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +D P F V +G + N +T+Y D + L++ D Sbjct: 2626 --YTRLIDSANAPIFGVDVNGCVNIWNKKAAEITQYTPNDVMGEN-----LVEKFITEDY 2678 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 ++ ++ A+ + + + N+ E M GI + Sbjct: 2679 REAVGLVFSKACEGTETANFEFPLMTKAGRRVEIL-LNATSRFNEIGEVMGVVGIGQDIT 2737 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497 + + + +++ + I ++ G + NR ++ Y ++L K Sbjct: 2738 ERI-------AQEQEYTRLIDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLV 2790 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 F+ + L + E + + L + Sbjct: 2791 AEFISNEYKMPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNEHGEVMGMV 2850 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + + A Sbjct: 2851 GIGQDITERIAQEQEYTRLIDTANA 2875 Score = 125 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 61/501 (12%), Positives = 133/501 (26%), Gaps = 28/501 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143 + +D +G + + + T +++G+ L + + + LK Q T Sbjct: 400 IFGVDENGCVNIWNRKAADTTQYSNEEVLGVNLVENFIPDDFQEAVWTVLSEALKGQETA 459 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L +G V I L A P Y+ GI V RL Sbjct: 460 NFEFPLITKDGR--RVEILLNATPRYNEKGVVI--GVVGIGQDITVRMAQEKETNRLIHS 515 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + V + M + + H++ V + L Sbjct: 516 ANAPIFGVDQDGRVNIWNLKVAEITQFSSQEIMGKDLVNRFVAEDHRESVGLLLRKAL-- 573 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + T + + + F + + ++ Sbjct: 574 QGEQTGNFDFPIITKTGRRVEILLNATPRYDELGQIFGVMGIGQDITERIAQEQE---YI 630 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +D P F V S G + N + +Y + + L++ D Sbjct: 631 RLIDTANAPIFGVDSEGRVNIWNKKAAEIMQYTTDAVMGEK-----LVEKYITKDYQDAV 685 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 +L + A+ I + + N+ + GI + D Sbjct: 686 RNVLSEALNGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGAVIGMVGIGQDITDRI- 743 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFL 501 + + +++ + I ++ G + NR ++ Y ++L K F+ Sbjct: 744 ------AQEQEYMRLIDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFI 797 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559 + + L + E + + L + Sbjct: 798 SEEYKVPVRSVLEKAFQDVETANFEFPLITKAGRRVEILLNATPRYNEQGQVMGMVGIGQ 857 Query: 560 DISEWKQEKNKLSHAKKIAEK 580 DI+ ++ + + A Sbjct: 858 DITVRMAQEKEKNRMIHSANA 878 Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats. Identities = 57/526 (10%), Positives = 143/526 (27%), Gaps = 34/526 (6%) Query: 62 VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD- 120 V+ N + E + + + +D G + + + + +++G+ L D Sbjct: 140 VTERNTKEMEYKKLIETANAP---IFGVDTEGRVVIFNAKAAQISEYAPDEVMGVDLVDT 196 Query: 121 -VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 +S+ + + T + L G V + L A P Y + G Sbjct: 197 LISEDFRSEVAAVFQRAFQGIETANFEFPLVTKTGR--KVELLLNATPRYDHTGQLVGVV 254 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G G RL + E + + ++ Sbjct: 255 GIG--QDITDRIIQEKEYSRLIDTANAPIF----GVDCNCEVIIWNKKAAAITDYTNEDT 308 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKE 298 + + +D K E + + T ++ Sbjct: 309 IGQKIFKFISEDYRDVVGKVLSKAMEGEGTANFDFPLITKSGRRLDILLNATPKYDHFGN 368 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357 + + ++ +D P F V +G + N T+Y + Sbjct: 369 ICGAVGIGQDITDRRAQEQE---YTRLIDTANAPIFGVDENGCVNIWNRKAADTTQYSNE 425 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + L++ D +L + + A+ I + + Sbjct: 426 EVLGVN-----LVENFIPDDFQEAVWTVLSEALKGQETANFEFPLITKDGRRVEIL-LNA 479 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + N+ + GI + +++ ++ + + I ++++G + Sbjct: 480 TPRYNEKGVVIGVVGIGQDITVRMAQEKETNR-------LIHSANAPIFGVDQDGRVNIW 532 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEE 536 N V+++ + ++I+ K L + L + + + T Sbjct: 533 NLKVAEITQFSSQEIMGKDLVNRFVAEDHRESVGLLLRKALQGEQTGNFDFPIITKTGRR 592 Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + L + DI+E ++ + A Sbjct: 593 VEILLNATPRYDELGQIFGVMGIGQDITERIAQEQEYIRLIDTANA 638 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 56/456 (12%), Positives = 118/456 (25%), Gaps = 36/456 (7%) Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 G + T + L G V I L A P Y+ E G G G Sbjct: 1247 GRAFEGVETANFEFPLITRAGR--RVEILLNATPRYNERGEVMGMVGIG--QDITDRIAQ 1302 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM---KNKVSSLTEYYAHK 250 R + + + + ++ + Sbjct: 1303 EQEHSR-------MIDTANAPIFGVDTDGRVNIWNRKAADIMQYTNEDVLGKNLVEQFIS 1355 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNH 308 ++ + L + E +F I + N E + Sbjct: 1356 EEYRVAVRSVLEKAFEGVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMVGIGQD 1415 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + ++ +D P F V +G + N + +Y + D ++ Sbjct: 1416 ITERIAQEQE---YSRLIDTANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAE 1472 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + K+ + L ++ A+ I + + N+ E Sbjct: 1473 FISEEYKVPVRSV-----LEKAFEGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGEV 1526 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 M GI + + + + +++ + I ++ G + NR + + Y Sbjct: 1527 MGMVGIGQDITERI-------AQEQEYTRLIDTANAPIFGVDINGHVNIWNRKAAHIMQY 1579 Query: 488 PVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 ED+L K F+ + L + E + + L + Sbjct: 1580 TNEDVLGKDLVAEFISNEYKVPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPR 1639 Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 DI+E ++ + S A Sbjct: 1640 YNERGEVMGMVGIGQDITERIAQEEEYSRLIDTANA 1675 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 58/499 (11%), Positives = 126/499 (25%), Gaps = 30/499 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G + + + G + M+G L V D + + Sbjct: 44 ELDKEGNITVWNSKTESMTGYASVDMLGEPLLPVVDESFRKIVSEKIEQALSGIAGADFE 103 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + V I L P + G G N K+L + + Sbjct: 104 LPL-VTARGSRVEIVLCLTPRFDTLGSVMGVVAIG--QDVTERNTKEMEYKKLIETANAP 160 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 V P M + + +V + E + Sbjct: 161 IFGVDTEGRVVIFNAKAAQISEYAPDEVMGVDLVDTLISEDFRSEVAAVFQRAFQGIETA 220 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + T + +++ + + + ++ +D Sbjct: 221 NFEFPLVTKTGRKVELLLNA--TPRYDHTGQLVGVVGIGQDITDRIIQEKE---YSRLID 275 Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P F + N +T Y + D I + D +L Sbjct: 276 TANAPIFGVDCNCEVIIWNKKAAAITDYTNEDTIGQKIFK---FISEDYRDVVGK---VL 329 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ A+ I + L + K + F GI + D R Sbjct: 330 SKAMEGEGTANFDFPLITKSGRR-LDILLNATPKYDHFGNICGAVGIGQDITDRR----- 383 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT- 505 + + +++ + I ++ G + NR + Y E++L + Sbjct: 384 --AQEQEYTRLIDTANAPIFGVDENGCVNIWNRKAADTTQYSNEEVLGVNLVENFIPDDF 441 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDI 561 + L+E L ++T TK+ + + + + DI Sbjct: 442 QEAVWTVLSEALKG--QETANFEFPLITKDGRRVEILLNATPRYNEKGVVIGVVGIGQDI 499 Query: 562 SEWKQEKNKLSHAKKIAEK 580 + ++ + + A Sbjct: 500 TVRMAQEKETNRLIHSANA 518 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 21/165 (12%), Positives = 58/165 (35%), Gaps = 9/165 (5%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + G+ + + I ++ Q +++ + I +++EG I Sbjct: 2 TPLLAEDGTCVGVYGVGQDVTEWAIQEK-------QYATVMMQANAPIIELDKEGNITVW 54 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N + GY D+L +P ++++ +++ + + LS E + + Sbjct: 55 NSKTESMTGYASVDMLGEPLLPVVDESFRKIVSEKIEQALSGIAGADFELPLVTARGSRV 114 Query: 538 LLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + L + + L D++E ++ + + A Sbjct: 115 EIVLCLTPRFDTLGSVMGVVAIGQDVTERNTKEMEYKKLIETANA 159 >gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311] Length = 608 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 169/393 (43%), Gaps = 28/393 (7%) Query: 423 QFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 E + + ++ ME E +L S+L +DG+ +R G IL+ N Sbjct: 228 GKDELGQLAETFNQLSERVEETQETMEAERNRLNSVLSHMTDGVIATDRRGKILTINEMA 287 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 L E+ + L+ L ++L +++ E+ ++ Sbjct: 288 LSLLDVKTEEAIGTFILTLLDIEADYN----LRKLLEAPNELLIDRSVSNKNDEQLIIRA 343 Query: 542 RIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + +HD++E ++ + + + +F++ VSHE+RTP Sbjct: 344 DFTMIRRESGFITGIVCVLHDVTEQEKNERE--------------RREFVSNVSHELRTP 389 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 LT++ + E + G NP ++ + ++ ++NDLL++S+++SG L Sbjct: 390 LTSMHSYIEALSE---GAWKNPEVAPDFLKVTLEETDRMIRMINDLLNLSRMDSGTSELQ 446 Query: 659 FEPVSLDEAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 E V+ +E V+ + + +K I F + D + Q+ NIL+NAI Sbjct: 447 LEYVNFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLWLEIDTDKIIQVLDNILNNAI 506 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ++P GG+I ++ + V D G+G+ ++ K F ++ ++ + GTGL Sbjct: 507 KYSPDGGKITCRL-LETHNNAVFSVTDQGLGIPKKDIAKVFDRFYRVDKARARKQGGTGL 565 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL ++K ++ A+ G ++ S KG+ I P Sbjct: 566 GLAISKEVIRAHNGFIWVESEEGKGSTFYISLP 598 >gi|284990063|ref|YP_003408617.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] gi|284063308|gb|ADB74246.1| multi-sensor signal transduction histidine kinase [Geodermatophilus obscurus DSM 43160] Length = 634 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 112/642 (17%), Positives = 222/642 (34%), Gaps = 50/642 (7%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKD 251 L RL + + K + + Q++P L +D Sbjct: 15 RLAARLLDVPFAMVNLVADDHQWTKAGHGLAVQRTPLSDSICRYPVQSGVRLEVNDLTED 74 Query: 252 DVLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + +T + + + T L ++ + L+ Sbjct: 75 EPFRTNAFVVEDPHVRFYAGEPLSAGGTPVGTLCVLDTEPRELSDDQRALLAELAAWAEA 134 Query: 310 SLS--------AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 L+ A + E+ VD P F V G N L Sbjct: 135 ELNNTALNHLVAELHDREHRLQRLVDAVPEGVFLVDEAGAARATNAVAERLFGLP----H 190 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L TLL + P R + T + + + Sbjct: 191 GRRVPLDTLL-----PGLSPDSPPFARRRRGDRTGVTRAEVTGRSADGHRFPLEVSVSPL 245 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + + + + ++ + IL + DGI + G+++ N A Sbjct: 246 EDAGDD--RWLVLARDLSPREDAEAELRRQERLTSMILASAGDGIVGSDHAGVVVFANPA 303 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS----TKEE 536 +++ G D++ K P E + + + + + ++ Sbjct: 304 ATRILGCRESDLVGKSLHAVAHHTRPDGSPFPQDECPTHRAITESQFVVVHTDLFWRRDG 363 Query: 537 KLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + + + + + T DIS+ + + K +F++ VS Sbjct: 364 RPVPIEMSVAPIVSGDEVHGAVTTFRDISQRTEVE--------------RLKDEFISVVS 409 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPLT+I G ++ N GP+ + + R+ + ++V+D+LD+ ++E+G Sbjct: 410 HELRTPLTSIKGSLSLLTNGVMGPVPAAQQP-LLDMARRNAERLGELVDDILDLDRLEAG 468 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNIL 712 +M L DE ++ + +Q A + + + D + Q+ N++ Sbjct: 469 RMPLRPVETDADELAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRMNQVLTNLV 528 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NAI F+ G + +S + + +EV L VRD G G+ + + F Q+ R Sbjct: 529 GNAIKFSSPGCPVTVSVS-RAGDEVCLAVRDRGPGIPEDQHAAVFERFRQVHEPGGART- 586 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 GTGLGLP+A+ +VD + G+ + S P KG+ ++ P + Sbjct: 587 GTGLGLPIARGIVDRSGGRIELTSEPGKGSTFTVVLPAARET 628 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 43/355 (12%), Positives = 90/355 (25%), Gaps = 32/355 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-------ILHIDPNNHIGDLLKRQNT 142 D G + + + +G ++G L V+ D + + Q Sbjct: 292 DHAGVVVFANPAATRILGCRESDLVGKSLHAVAHHTRPDGSPFPQDECPTHRAITESQFV 351 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W +G VPI+++ PI SG G V R + + + D+ Sbjct: 352 VVHTDLFWRRDGRP--VPIEMSVAPI------VSGDEVHGAVTTFRDISQRTEVERLKDE 403 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 S + + + K + + P + + + A + L + L Sbjct: 404 FISVVSHELRTPLTSIKGSLSLLTNGVMGPVPAAQQPLLDMARRNAERLGELVDDILDLD 463 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E +P + + Q G+LQ + + LS + + + Sbjct: 464 RLEAGRMPLRPVETDADE---LAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRM 520 Query: 323 PETVDKC------------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + + P+ V G+ + D + Sbjct: 521 NQVLTNLVGNAIKFSSPGCPVTVSVSRAGDEVCL--AVRDRGPGIPEDQHAAVFERFRQV 578 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 P + + + R L + + E Sbjct: 579 HEPGGARTGTGLGLPIARGIVDRSGGRIELTSEPGKGSTFTVVLPAARETTGGDG 633 >gi|196232629|ref|ZP_03131481.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] gi|196223391|gb|EDY17909.1| signal transduction histidine kinase, nitrogen specific, NtrB [Chthoniobacter flavus Ellin428] Length = 1047 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 105/753 (13%), Positives = 239/753 (31%), Gaps = 69/753 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 D G ++ ++ G + IG + + + + TW G+ Sbjct: 185 TDEKGIIQWVNPAFTAMTGYTPEEAIGQNPRLLKSGEHDPEFYQRLWQTILSGQTWRGEF 244 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 T +G+ ++ P+ ++ E + F +++ + A + + KF + Sbjct: 245 TNRRKDGSLYCDLHTIS--PVRGKDGEITHF--VAVMNDVTENRRKEAAMRASETKFRSV 300 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-----VSSLTEYYAHKDDVLKTE-KYPL 261 E + + + + + D E Sbjct: 301 FEAANDGMLILHDGAFTDANTKTLEMFGLAREQLIGATPGDISPETQPDGRGSREVAMGK 360 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + + P+ ++ + G + + L+ S E Sbjct: 361 MQNALAGEPQFFEWVLRRQDGRPIDVEVGLNRFELEGENYLLAITRDISERKRAAEKLGR 420 Query: 322 TPETV----DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + E + + + + N + L K E G Sbjct: 421 SVERLNLATHAAGLGVWDWDVQKNELIWDDRMYELYGLKK----EHFSGAYDTWIQHVHP 476 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ + + + R I+W N + + + + G+ + Sbjct: 477 EDAVRCDLEVQMALRGQKDLDME-FRIRWPNGNVRQIKAYAEVVRDAGGQPLRVTGVNYD 535 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495 + R +++ + L + I G++ N +L+G+ + + + Sbjct: 536 ITERRRADQRIREQAEMLKR----AHEAIIEREVHTGLVTFWNEGAERLYGWSAAEAMGR 591 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + P M +L+ + K+ + L + + L Sbjct: 592 HGSFLFA--DPGAMERITENLLAAGEWRG---EVQHVAKDGRKLVVSSHVTLLRGDDGEP 646 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + DI+E K+ + + A+++ + V+H++ L I+ S + Sbjct: 647 KSALVINIDITEQKKMEAQFLRAQRM-----ESVGTLASGVAHDLNNILAPIM-MSVPLL 700 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSE 670 Q+ P + I+ IV +L + +E ++ L + + E Sbjct: 701 RQQLPPDTLDAV---VSNIETCVERGARIVQQVLAFGRGLEGERLPLK-----IGAVIDE 752 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++++ K I + +P ++ D + Q+ LN+ NA P GG++ +S T Sbjct: 753 MMAIMRETFP-KDITLECLPVAKMPPVVGDATQLHQVLLNLCVNARDAMPGGGKLRLSAT 811 Query: 731 H--------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 H V+L V D+G G+ +E+ +PF + G+GTGL Sbjct: 812 HLEVDASYASMLPEAKPGPYVLLEVADSGSGIPPEVVERIFEPFFTTKET----GKGTGL 867 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL +V ++ G + + P KGT ++ P Sbjct: 868 GLSTVHGIVRSHGGFIKVATEPGKGTTFQVYLP 900 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 37/337 (10%), Positives = 101/337 (29%), Gaps = 17/337 (5%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + SE +++ + ++ + K+ + +++ E + Sbjct: 106 ASPHELVAAISEAAAVHHRPPSVHLSETEILKEYSERLVLKLEEKNVELQA---RTEELE 162 Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 L + ++ + G + + NP+F +T Y + I L Sbjct: 163 RSRAQSLLQAKVLETTANAVIITDEKGIIQWVNPAFTAMTGYTPEEAIGQNP----RLLK 218 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 D + + T + + + E Sbjct: 219 SGEHDPEFYQRLWQTILSGQTWRGE---FTNRRKDGSLYCDLHTISPVRGKDGEITHFVA 275 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + R + M + S+ EA +DG+ I+ +G N ++FG E + Sbjct: 276 VMNDVTENRRKEAAMRASETKFRSVFEAANDGMLIL-HDGAFTDANTKTLEMFGLAREQL 334 Query: 493 LRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547 + + + + + ++ + + + ++ + + + + + + Sbjct: 335 IGATPGDISPETQPDGRGSREVAMGKMQNALAGEPQFFEWVLRRQDGRPIDVEVGLNRFE 394 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 L + DISE K+ KL + + + Sbjct: 395 LEGENYLLAITRDISERKRAAEKLGRSVERLNLATHA 431 Score = 84.7 bits (208), Expect = 7e-14, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 9/167 (5%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ--LCS-ILEATSDGIAIINREGIILSTNRAVSKL 484 +E ++V+ + ++E Q L + +LE T++ + I + +GII N A + + Sbjct: 142 RLVLKLEEKNVELQARTEELERSRAQSLLQAKVLETTANAVIITDEKGIIQWVNPAFTAM 201 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY E+ + + + L + + QT K+ L Sbjct: 202 TGYTPEEAIGQNPRLLKSGEHDPEFYQRLWQTILSG--QTWRGEFTNRRKDGSLYCDLHT 259 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 I + + M+D++E ++++ + ++ +D Sbjct: 260 ISPVRGKDGEITHFVAVMNDVTENRRKEAAMRASETKFRSVFEAAND 306 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 38/399 (9%), Positives = 87/399 (21%), Gaps = 20/399 (5%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + +E + G A + +G + I + L W G+ Sbjct: 568 GLVTFWNEGAERLYGWSAAEAMGRHGSFLFADPGAM--ERITENLLAAGEWRGEVQHVAK 625 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G L + + + E I A R + S Sbjct: 626 DGRKLV--VSSHVTLLRGDDGEPKSALVINI--DITEQKKMEAQFLRAQRMESVGTLASG 681 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + I + + ++ + +L E+ Sbjct: 682 VAHDLNNILAPIMMSVPLLRQQLPPDTLDAVVSNIETCVERGARIVQQVLAFGRGLEGER 741 Query: 273 EDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + + + NL D P Sbjct: 742 LPLKIGAVIDEMMAIMRETFPKDITLECLPVAKMPPVVGDATQLHQVLLNLCVNARDAMP 801 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + + S+ + + + P +P + Sbjct: 802 GGGKLRLSATHLEVDASYASMLPEAKPGPYVLLEVADSGSGIPPEVVERIFEPFFTTKET 861 Query: 391 R-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + +H I + + + P + G D + ++ Sbjct: 862 GKGTGLGLSTVHGIVRSHGGFIKVATEPGKGTTFQVYLPASPGCSQ-VRDADTARAEIPE 920 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +L I +++ E + + R + FGY Sbjct: 921 GHGEL----------ILVVDDEAAVRESARHALEAFGYE 949 >gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1] gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. BTAi1] Length = 774 Score = 340 bits (871), Expect = 9e-91, Method: Composition-based stats. Identities = 133/685 (19%), Positives = 261/685 (38%), Gaps = 75/685 (10%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 + D A + L + H V + I ++ L +++ Sbjct: 90 HMAMRPDRVAHIEHLQSLLPDMIPAWGAAPGRHVIVTGADHRILARVPVDAALGENDRIL 149 Query: 242 SL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 L T + L + + + + ++ + + Sbjct: 150 DLISTAQLLATPGLQGAVTEITLPNGRPAFAISQLIKALPGRVVIIQEKLEPIWGSDAAL 209 Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340 L D +++ + + G Sbjct: 210 SVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGR 269 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 +F++N S + + D+ G ++ L+++ + ++ I + Sbjct: 270 IFWSN-SMFEMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVA-----GDIHQIDQS 323 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + + + + GI + + + K ++L +E Sbjct: 324 FRMRHTEGHWIWLRVRCELSQGTTASGLHLIGIAVDITEQKSLAEKTVEADLRLRDAIET 383 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519 S+ + + ++ N KL P ++ + +E + L + Sbjct: 384 ISEAFVLWDANNRLVLCNSHFQKLHKLPDSAVIPGTSYETVIEVGKMPEIRTRLHD---H 440 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------- 571 + + + L + ++ Y DI+ K+ + KL Sbjct: 441 SQQSPGARTFEAQLDDGSWLHIS---ERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLR 497 Query: 572 ---------------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 S K AE+ + KS FLA +SHE+RTPL AII Sbjct: 498 ATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLNAII 557 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ + FG LG+ +Y EY + I SG +L+++ND+LD+SKIE+G+M L EP+ L Sbjct: 558 GFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDL 617 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + ++E++ +V A +KR+++ NIP I+AD R+ KQI +N+LSNA+ FTP GG+ Sbjct: 618 AKTLAESLRVVSGRAQDKRLVLDADIEGNIP-IVADRRATKQIMVNLLSNAVKFTPEGGR 676 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + + +V+L + DTG+G+ L + +PF Q+ + G+GLGL +A+++ Sbjct: 677 VTMRSRVFDD-KVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSL 735 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 + G + S GT++ + P Sbjct: 736 TQLHGGSMRLRSRIESGTVVRVTLP 760 >gi|327541975|gb|EGF28476.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 1150 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 111/743 (14%), Positives = 241/743 (32%), Gaps = 44/743 (5%) Query: 92 HGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G L +++ K I N + G + ++ +D + + ++ + + Sbjct: 291 DGTLTQMNAAGLKMIEANPTANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDII 350 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + G+ ++ + A+P+ N E + A + +++F L + Sbjct: 351 GLRGSRRHM--ETHAVPLSLTNGE---TVQLAVTRDITERKRSEATLRENERRFRALTQA 405 Query: 211 KKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + S ++Y H DD + K + E+ S Sbjct: 406 TSDIVFRMNADWSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEKQSF 465 Query: 270 PEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326 E E I+ + +++ E+ + +E ++ +T+ Sbjct: 466 YELEHRVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTLLT 525 Query: 327 --DKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 ++ P+ ++ A P+F + D E + T+ S+ Sbjct: 526 VIEQSPLGIYLVDGDFKIAQVSLGAEPAFQNVQPVIGRDFEE---VMHTIWPPEFASEAV 582 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 I L + E+ + + Sbjct: 583 RIFRHTLKTGEPYVSPGLTEKRKDLGETESYEWQVNRITLADGSYGVVCYFF----DTTR 638 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + ++ + + S G N+ + G E++ + Sbjct: 639 LQQAADALRESEVRFRMLADNMSQLAWTCCDLGECNWYNQRWYEYTGCTFEEMQGWGWRQ 698 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + + + + + E ++ + + + Sbjct: 699 VHHPDHVDRVVERIQRAATAG--EVWEDTFPLKGRDGQYRWFLSRAVPIRDEEGTIVRWF 756 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T D++E ++ + L K +FLA ++HE+R PL I +++ Sbjct: 757 GTNTDVNELRETQQLLHD-------ADRRKDEFLAMLAHELRNPLAPIRSGLDLLA---- 805 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + + + V+ +V+DLLD+S+I GK+ L E + V +AI V Sbjct: 806 -IADDDEHRDVVRVMQEQVTHVVRLVDDLLDVSRIMRGKVELRKERIEFQSTVRKAIDAV 864 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + L+ + + AD + Q+ N+LSNA + G I +S H NE Sbjct: 865 RDVIESHGHLLTITLPEKTVWLEADPVRIVQVLENLLSNATKYMDGSGAIELS-AHVKNE 923 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + ++++D G+G+ L + F Q S G G+GL L K +++ + G + Sbjct: 924 SLFIQIKDEGIGIDQEFLPNIFELFAQSDRSLDRSKGGLGIGLTLVKQLLEMHGGNIHAE 983 Query: 796 S-TPAKGTLIEIIFPLYDTSHPH 817 S KG+ I P+ P+ Sbjct: 984 SDGLGKGSSFHIELPIASPPEPN 1006 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 117/410 (28%), Gaps = 9/410 (2%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + ++ RA K++ + L + G S+ ++ F LR + V L + Sbjct: 10 IAESNDQRRAHLKQVLDRRHDLVTVDGGKSAWQQLTQGRFDAVVAGFDLREVSGVKLLAQ 69 Query: 246 YYAHKDDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 AH + S Q+ F + L Sbjct: 70 TRAHAELRGVPFVLVADEASPIDPTTWQQVFEFGRSDILCSPINEHELLARVDSIIRRAR 129 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 +N + + + + S + Y + + + + K + D Sbjct: 130 VKNESADMLQRQKSRLQMALLASRMVAVEWDISADTVLY-SENAIEIFGIKLLSDHATGP 188 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L D+ + + + + I+ + + + + + Sbjct: 189 TARKL----VHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWIEERGYVATDAS 244 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + R ++ ++ L +I + T + I ++ +G + N A K+ Sbjct: 245 GKPTKLIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKM 304 Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 P ++ + + + S LE +G + + Sbjct: 305 IEANPTANVAGNSVYELIAPEFLDCFREFNERVCS-GHSGVLEFDIIGLRGSRRHMETHA 363 Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + L DI+E K+ + L ++ + SD + R+ Sbjct: 364 VPLSLTNGETVQLAVTRDITERKRSEATLRENERRFRALTQATSDIVFRM 413 >gi|119898108|ref|YP_933321.1| putative two-component hybrid sensor and regulator [Azoarcus sp. BH72] gi|119670521|emb|CAL94434.1| conserved hypothetical two-component hybrid sensor and regulator [Azoarcus sp. BH72] Length = 1014 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 117/656 (17%), Positives = 218/656 (33%), Gaps = 53/656 (8%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L + L + + +R +++ L E+ ++ Sbjct: 206 LTFRMVRLDVAVPSLGMALPVATALAAASFSLLVMRPASRLVQLLEHD-SPGALIFRRLV 264 Query: 260 PLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-------- 310 P+ + + + T+ + T+ L + Sbjct: 265 PMAVGLPLLVAWLQALGLRAGWFESTESEGVLTVAAIVAGVGLILQMSSRLDEMNLSRSQ 324 Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 D T+ V + + N + L ++ I Sbjct: 325 AERRADTQRQWLEVTLANIGDAVVTVNDEVRVSFMNAAAEALLDVRAAAAIGQPVAELLT 384 Query: 370 LDAPKLSDN---------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSL--- 411 L S+ + D T A I+ +RE + Sbjct: 385 LVDGSSSEPLACPLHAAFSLARTVAVEGEPAVRHRDGTLQAVEVTATPIKDHRERVVGGV 444 Query: 412 -AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK----MEIEVMQLCSILEATSDGIA 466 + + +A + E ++ + + + L +I +T + I Sbjct: 445 MVLRDVSVGRAREHAEREAYAALDRRVAERTRALDRTMSVLRESTTLLRTIAASTPELIV 504 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTL 525 +R+G I+ N A + G ++ + + ++ + Sbjct: 505 AKSRDGRIMMINPAALQAMGMSRAQVVGRKEEELFGDAEDIRRSAENDRRVIETGRPVVV 564 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL-------SHA 574 E+ L + L + DI+E K+ + L Sbjct: 565 EERRTVQEGARTYL---VTKSPLRDAQGQVFGLVGVAKDITERKRAQQDLEQLLAAEHRL 621 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + AE+ + K +FLA VSHE+R+PL A+ G+S+V+ R A I R+ Sbjct: 622 RGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVLIGSR--EPDAALVARAAEAIKRNI 679 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +++DLLD S+I SGK++L V+L + V+ + L A +K I +R + Sbjct: 680 DHQTRLIDDLLDSSRIISGKLDLALHRVNLVDVVNAVLDLSTDSAQDKHIELRFACDVEE 739 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + D ++Q+ N+LSNAI FTP GG++ + T L V D G+G+ L Sbjct: 740 LYVDGDFDRLQQVLSNLLSNAIKFTPEGGRVQVRLLCTER-SAELSVTDNGIGIEPDFLP 798 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 F Q S R G G+GL L + +V+ + G S +G + +I P Sbjct: 799 HVFDRFSQADTSMTRRYLGLGIGLALVRNLVELHGGTVQASSAGSNQGAMFTVILP 854 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 34/339 (10%), Positives = 81/339 (23%), Gaps = 25/339 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKTT 148 G + I+ + +G +++G + ++ + +++ + Sbjct: 508 RDGRIMMINPAALQAMGMSRAQVVGRKEEELFGDAEDIRRSAENDRRVIETGRPVVVEER 567 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 EG Y+ + P+ + G G+ + ++L L Sbjct: 568 RTVQEGARTYL---VTKSPLRDAQGQVFGL--VGVAKDITERKRAQQDLEQLLAAEHRLR 622 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + E I S + P +K L ++ + + + Sbjct: 623 GEAERANRAKDEFLAIVSHELRSPLNALKGWSQVLIGSREPDAALVARAAEAIKRNIDHQ 682 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH------PSLSAYFDEGENLT 322 +D + K N L L D E Sbjct: 683 TRLIDDLLDSSRIISGKLDLALHRVNLVDVVNAVLDLSTDSAQDKHIELRFACDVEELYV 742 Query: 323 PETVDKCPIPF---------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 D+ F G + L + + + G+ Sbjct: 743 DGDFDRLQQVLSNLLSNAIKFTPEGGRVQV---RLLCTERSAELSVTDNGIGIEPDFLPH 799 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + M R I + + ++ + A Sbjct: 800 VFDRFSQADTSMTRRYLGLGIGLALVRNLVELHGGTVQA 838 >gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio cellulolyticus CD2] Length = 606 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 171/376 (45%), Gaps = 24/376 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ E ++ +IL +DG+ N +G ++ N A + G ++ F+ Sbjct: 246 ELKKTLNEISREKNKIETILNYMTDGVIAFNLDGEVVHANPASKLMLGVNEFNMDFNKFS 305 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 YL + + + + + + + + M Sbjct: 306 NMYNLGITIEEMLYLETFSTKEASLSFDNKYIR-------VYFALSTNDQNKAEGIIAVM 358 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD + ++ + + +F+A VSHE+RTPLT+I +SE + + Sbjct: 359 HDNTVQQKL--------------DNMRREFVANVSHELRTPLTSIKSYSETLMDGAL--E 402 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + N I+ + + +V DLL +S++E+ +M + +P + V ++ ++L Sbjct: 403 DKETAYRFLNVINSEADRMTRLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVEKIELS 462 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A EKR +I + P + AD ++Q+ LN+L+NAI +TP G+I + + Sbjct: 463 AKEKRQVIECFSIGDKPEVYADKDRIEQVVLNVLTNAIKYTPDKGKITVYIG-KMYSDAY 521 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 ++V D+G+G+ ++++ + F ++ ++ GTGLGL +AK +++A+ G I S Sbjct: 522 VKVVDSGIGIPEEDIKRVFERFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSISISSQL 581 Query: 799 AKGTLIEIIFPLYDTS 814 KGT + + P++ S Sbjct: 582 GKGTEVIVRLPIHYES 597 >gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473] Length = 1522 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 111/644 (17%), Positives = 228/644 (35%), Gaps = 36/644 (5%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + D + AL + + ++ + V + I + K+ Sbjct: 369 LARNMTADLERLALVAKNTSNAVIITDVNRKIVWVNEGFERITGYSRAEAFGKSPGKLLQ 428 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + D K S + + +Y + N+ E + Sbjct: 429 CKDT-----DQAVASKMRTALDAGESFKGEIVNRDKSGREYWIELEIQPRYNDQNEPIGF 483 Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355 ++ + S + + + + S G + N +F ++ Y+ Sbjct: 484 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADSTGTITDVNNAFCNISGYR 543 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + I + L + + + I+ + + + + Sbjct: 544 REELIGQ----TYRLVDSHTHSAEFWQSMWNDIASG--ISWRGEICNKAKDG-SLYWVDT 596 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 N + I+ + + + + I QL + GI +N L Sbjct: 597 TIAPFNNSAGQIERYISIQVDITANKEQQASLIIAKNQLVRAADVAELGIWTLNVSDGSL 656 Query: 476 STNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 S + ++ ++ P E + P L S + + L + + + Sbjct: 657 SFDDRMNDIYSLP-ESLRNTPIPLTYWYSLLHPEDISEVKKAIETALEN-VSVYRQIFRI 714 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + +++ DI++ ++ +N L A++ AE+ + KS F Sbjct: 715 FVKNQVHFIQSTGTVERDENGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSAF 774 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHE+RTP+ AI+G +++ + + +YA + + +L ++ND+LD S Sbjct: 775 LANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAAKSETATRTLLRLLNDILDFS 830 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707 KIESGKM L P + + + ++ ++ + ++P+ + D ++QI Sbjct: 831 KIESGKMALECIPFDIHVMLRDLAVILSSNLKATKVEVLFDIDPSLPQFVEGDSMRLQQI 890 Query: 708 ALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 N+ NA+ FT G ++ I S +V L+ VRDTG+G+ + F Q Sbjct: 891 LTNLGGNALKFTEQGEVVLFIKVIDRSRHQVRLQFGVRDTGIGIAPENQKTIFSGFTQAE 950 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S R GTGLGL +++ V G+ + S KG+L Sbjct: 951 ASTTRRFGGTGLGLVISQRFVALMGGELTLESQLGKGSLFHFTI 994 Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats. Identities = 53/450 (11%), Positives = 117/450 (26%), Gaps = 51/450 (11%) Query: 174 EFSGFRGFGIVHVNRVD--NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 EF G RGFG + ND A + L +++ + Y I + Sbjct: 111 EFPGVRGFGFIQHVERSHLNDFIAETRADGAPNFALRQLQDKQH---DDLYIIKYIEPAE 167 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + P L+ + + + L K Sbjct: 168 KNQGADGLDIGSESVRREAALSAINSGKPTLSGTIRLVQSNVNTPGVLLFVPVYKWGTNP 227 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPETVDKCPIPF---FVYSHGNLFY 343 +++ + ++ + + E D V+ Y Sbjct: 228 TTPAERQASLVGLLYSPIVIADLLRDIPEFVNGRVDVELFDSLNELSNQTLVFDADGSKY 287 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 A+ + + + + + + + L S Sbjct: 288 AD--------FIPDEKHTNQTIAARIFHNTNILP-LPGREMTLRVSSTPAFE-ELTQRYA 337 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 W + + A +G ++ R +E +L + + TS+ Sbjct: 338 PW----LILVFGFLLSSALALLIWQQVSGRNRAEMLARNMTADLE----RLALVAKNTSN 389 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLR 522 + I + I+ N ++ GY + K L+ + + L Sbjct: 390 AVIITDVNRKIVWVNEGFERITGYSRAEAFGKSPGKLLQCKDTDQAVASKMRTALDAG-- 447 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIA 578 ++ + + K + + + I+ + DISE K +L Sbjct: 448 ESFKGEIVNRDKSGREYWIELEIQPRYNDQNEPIGFMAIESDISERKATYQRL------- 500 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 E + L+ ++ L II ++ Sbjct: 501 EAALRENNALLSTLN------LHGIISTAD 524 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 33/377 (8%), Positives = 91/377 (24%), Gaps = 21/377 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146 D + + ++E + G + G + D + + L ++ G+ Sbjct: 394 TDVNRKIVWVNEGFERITGYSRAEAFGKSPGKLLQCKDTDQAVASKMRTALDAGESFKGE 453 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G I+L P Y+ E GF I + ++ + Sbjct: 454 IVNRDKSGREY--WIELEIQPRYNDQNEPIGFM--AIESDISERKATYQRLEAALRENNA 509 Query: 207 LHEIKKGHSSVEKEKY----DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L H + + + ++ T + Sbjct: 510 LLSTLNLHGIISTADSTGTITDVNNAFCNISGYRREELIGQTYRLVDSHTHSAEFWQSMW 569 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE- 319 S + + + + + Y N++ + Y+S + + + Sbjct: 570 NDIASGISWRGEICNKAKDGSLYWVDTTIAPFNNSAGQIERYISIQVDITANKEQQASLI 629 Query: 320 ---NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 N D + + + + + Y + + T + Sbjct: 630 IAKNQLVRAADVAELGIWTLNVSDGSLSFDDRMNDI--YSLPESLRNTPIPLTYWYSLLH 687 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + + + N + + ++ + M GI Sbjct: 688 PEDISEVKKAIETALENVSVYRQIFRIFVKN--QVHFIQSTGTVERDENGKAMLMMGINR 745 Query: 436 EDVDTRINKRKMEIEVM 452 + R + ++ Sbjct: 746 DITQQREAENILKTARE 762 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 26/251 (10%), Positives = 73/251 (29%), Gaps = 12/251 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148 D+ G + +++ G ++IG V S + + + + +W G+ Sbjct: 524 DSTGTITDVNNAFCNISGYRREELIGQTYRLVDSHTHSAEFWQSMWNDIASGISWRGEIC 583 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ +V +A P + + + + + + +A + Sbjct: 584 NKAKDGSLYWVDTTIA--PFNNSAGQIERYISIQV--DITANKEQQASLIIAKNQLVRAA 639 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + S P LR + H +D+ + +K Sbjct: 640 DVAELGIWTLNVSDGSLSFDDRMNDIYSLPESLRNTPIPLTYWYSLLHPEDISEVKKAIE 699 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E S+ Q + + + ++ + ++ + + + Sbjct: 700 TALENVSVYRQIFRIFVKNQVHFIQSTGTVERDENGKAMLMMGINRDITQQREAENILKT 759 Query: 322 TPETVDKCPIP 332 ET ++ Sbjct: 760 ARETAEEANKA 770 >gi|307153865|ref|YP_003889249.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306984093|gb|ADN15974.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1153 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 108/788 (13%), Positives = 245/788 (31%), Gaps = 79/788 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + D G+ I + G ++ + L D + +L + + Sbjct: 376 VFITDDQGFFTFICPNTEQIFGYDYQEI---KFMKNIKNLLGDIFDTQQELTQFEKIINL 432 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + G + I++ + + + +++F Sbjct: 433 EKVIINKFGERRVLLINI--QQVSIAQGTI-----LYTCREITHRKKAEEILQDREEQFR 485 Query: 206 HLHEIKKGHSS-VEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTE 257 L E + + Y + + ++ + + Y + + + Sbjct: 486 QLAENIRDVFFIHDSHSYQLIYISPAFEKIWGIKQEKVYEDSLIWMNSIYPEDREKVINK 545 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD- 316 ++ + L + N + + NN E + + + D Sbjct: 546 VKQEQANQPTQL--EYRIVKPNQEIRWIRVRSFPVFNNLGEVYRIVGIAEDITERKQADQ 603 Query: 317 ---EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE--IAGGLSTLL 370 E E ++ V+ + N + L + +E + L Sbjct: 604 LIYESEQRYRNLINNLHAGVIVHGSDSQILLCNSKAVELLGIERECLLEKTALDPVWHFL 663 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + PV + + + + + I+ N + + F + + Sbjct: 664 KEDGSLMSLKDYPVNQVIATKKSLT-NYVVGVIRKNSKTLIWGLVNAFPELDIEGNLTQI 722 Query: 431 NGIEPEDVDTR---------------------------------------INKRKMEIEV 451 + + + + +E Sbjct: 723 VVTFFDITERQETELKLQKMNEELELKIEERTYHLHQANQQLRLEIFEREQAELALEENK 782 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMN 510 L ++++ I + + + ++ N ++K + ++ I + + Sbjct: 783 AFLRNVIDNVPSMIFVKDADSRVILANNFLAKFYNKSIDQIEGQQHIEFVPDLADQKKFL 842 Query: 511 HYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567 ++ + E+ + E + DI+E K Sbjct: 843 QEDQQVFKSLETLLIPEQTITLPSGEVRYFQTSKTPLISIDGKVKYLLGVATDITERKNF 902 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L A ++ K F+ +SHE RTPLTAI+G +E + + L + ++ Sbjct: 903 EQQLEIALAQEKELHKLKIQFIDLISHEFRTPLTAILGSAEFV-ERHGEQLKAEKKEKHL 961 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRILI 686 I +G + ++V+D+L IS+ ESGK+ + P+ E I +Q +A I + Sbjct: 962 RNILLAGRRLNELVDDVLSISRAESGKLEFNPTPLDFVEFCQNLIEEIQFGFAKNHHIEL 1021 Query: 687 RTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + D + ++ I +N+LSNA ++ I +S ++I ++ D Sbjct: 1022 LLKGFVPEKDCNICYLDEKCLRHILINLLSNATKYSAVDSLIQLSLDCQEQ-QIIFQISD 1080 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ + +PF + N GTGLGL + + V + GK S +GT Sbjct: 1081 QGIGIPLEDQSLLFEPFYRANNVHT--IPGTGLGLKIVQTYVTLHKGKVEFISEEGEGTT 1138 Query: 804 IEIIFPLY 811 + P Y Sbjct: 1139 FTVTLPRY 1146 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 8/167 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 ++ + + ++ IL SD + I + +G ++FGY Sbjct: 341 FAVRTELELQQQKTAKILQDSENLHRLILTNISDSVFITDDQGFFTFICPNTEQIFGYDY 400 Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++I K L + E+ + LEK+ + E ++L + I + Sbjct: 401 QEIKFMKNIKNLLGD-----IFDTQQELTQFEKIINLEKVIINKFGERRVLLINIQQVSI 455 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-ESSHKSDFLARVSH 594 T +I+ K+ + L ++ + + + F SH Sbjct: 456 -AQGTILYTCREITHRKKAEEILQDREEQFRQLAENIRDVFFIHDSH 501 >gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3] Length = 1686 Score = 339 bits (870), Expect = 9e-91, Method: Composition-based stats. Identities = 111/591 (18%), Positives = 208/591 (35%), Gaps = 24/591 (4%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 S L + A E + + L ++ + L Sbjct: 623 DWPELQSILNKALAQIPQDKVREIQHRWVNVQYELGLKKQQVFDWAVRIAVAVVLVLLMF 682 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353 + + N D G + N + L L K Sbjct: 683 SLRNRRLNKDIAQRIHTEEQLSLSMNKFQALFDSAVDACVITDRQGVIIECNSALLSLLK 742 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLA 412 Y+ + L +D+ + L ++ + A T + Sbjct: 743 YQHKHQLIGRRTLVYYPPHLGETDSETLFEQRLQTVLEQGQLRFEADFVT-----SMAEI 797 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + K + ++ G + + ++ +E E L +L + G+ I EG Sbjct: 798 VNVEVTLKRIELNGSLFVLGTYHDLSERKLMNALLERERDLLKHVLGRSPIGVWIC-IEG 856 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + N ++++ G + + Q +++E+ E Sbjct: 857 VCRYVNEQITEMTGLQ----VGQSVYPIFAQPD--DYRCHISELDLSQDSTVFETQLFDC 910 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + L + DI++ K +++L+ AK AE + KSDFLA + Sbjct: 911 KGQRRDVLLTAYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFLANM 970 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ AI+G S ++ + +Y + ++ +L I+ND+LD SKIE+ Sbjct: 971 SHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGILNDILDFSKIEA 1026 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711 KM++ LD+ +S ++V EK + +PR D + QI +N Sbjct: 1027 EKMDIECAVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINY 1086 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +NA+ F+ + +++S + E + V D G+G+ + F Q+ S Sbjct: 1087 CNNAVKFSHNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTS 1146 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPH 817 GTGLGL + K + G+ + S G+ + L DT P+ Sbjct: 1147 REYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYVRLTLDCADTYDPN 1197 >gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33] gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella neotomae 5K33] Length = 783 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335] gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335] Length = 1023 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 176/406 (43%), Gaps = 39/406 (9%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R ++ ++ + + + T + + + +G NR + F ++++ K Sbjct: 176 RLLQRRQSEERLRDSEARFRAFMNNTDAMVFMKDSQGCFTYVNRPLEAEFKLQPDELVGK 235 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + +LS + Q+L ++ T + ++ S Sbjct: 236 DDFYLSSEEVAKQVRENDARVLSNNQSQSLVEVV--PTPDGISRYWKVNKFPFTDHSGQK 293 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKES--------------SHKSDFLARVSHEIRT 598 T DI++ KQ + +L+ K ++ + KS FLA +SHEIRT Sbjct: 294 HVGGTAFDITQQKQLEKRLTLEKLEQQRINESLAIAIKAAEAASQAKSSFLAMMSHEIRT 353 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ A++G +E++ G +P+ ++ N I GN +L ++ND+LD SKIES + L Sbjct: 354 PMNAMLGMAELL----DGTELSPQQQDFINIIRTGGNTLLTVINDILDFSKIESNNLELE 409 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRI----LADLRSVKQIALNILS 713 L E + + ++L A EK++ + + + RI D+ ++QI N++S Sbjct: 410 ISRFDLYECIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPTYFKGDVTRLQQILSNLVS 469 Query: 714 NAIHFTPSGG---QIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQ 762 N+I FT G Q+ + + E+ V DTG+G+ ++ +PF Q Sbjct: 470 NSIKFTQEGEVSLQVKVGAVASEERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFSQ 529 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + S R GTGLGL ++K +V+ G+ + S G+ Sbjct: 530 VDASMTRRYGGTGLGLAISKQLVELMGGEMGMVSKVGSGSTFHFCI 575 >gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 889 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 99/433 (22%), Positives = 189/433 (43%), Gaps = 20/433 (4%) Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + ++R+ I + ++ S A + N+ + E + +R Sbjct: 313 IAITERSSIQVELAVEKVRRGEYQSRAELSEKLIQLNESLVEINDCLEESHREKDELLRR 372 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + +L +IL + +D +NR+ I N +K+ ED++ K + + Sbjct: 373 E-QALRSRLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQHLEPEDLIGKNYWEQWARTK 431 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + L+ ++ + L + + + +I+E K Sbjct: 432 GTDFEREYRRSLAENIP--VHFEVLYELWD---MWFEVHAYPAEDGLGIF--FRNITERK 484 Query: 566 QEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q + + + A+ AE+ + K DFLA +SHE+RTPL I+G++ ++K + L Sbjct: 485 QAEQEREYLLMREQIARSEAERANRLKDDFLAVLSHELRTPLNPILGWATLLKKRN---L 541 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 I+R+ L + ++ DLLD+S+I+ GK+NL+ + V+L + EA+ V L Sbjct: 542 EEATRRRGIETIERNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEEALETVSLA 601 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 K I ++T+ N+ + D ++QI N+L+NAI FTP GQI ++ N Sbjct: 602 IEAKNIDVKTALNVNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALERV-NNSAQ 660 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797 ++++D G G+++ L + F Q + + G GLGL + K + + + G S Sbjct: 661 IQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAG 720 Query: 798 PAKGTLIEIIFPL 810 G + PL Sbjct: 721 EGMGATFTVNLPL 733 >gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC 7421] Length = 910 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 121/784 (15%), Positives = 244/784 (31%), Gaps = 78/784 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNHIGDLLK-RQNTWYGK 146 D G + E ++ + +G ++ G R ++ + + + L + Sbjct: 126 DCAGMIVEANDAFLQLVGYNREELAAGRVRWAQMTPPEYRERDEQAMAELASTGACRPYE 185 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G VPI + A + E F + R D +R Sbjct: 186 KEYIHKDGR--RVPILIGATLL--EGGERVACFVFDLGGHRRARADLERANERFQLAAKA 241 Query: 207 L-----HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + + + + ++ L Sbjct: 242 AGCLVYDWDLEANRVEHAYGLLELLGYNAEEISEPAHLWWAEQIHPDDRERANAEVWAAL 301 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 +E + + + + + + S S + Sbjct: 302 QDAEMPNYAIEYRVRNRQGHHINVCDRGVVRRAPDGRAIRVVGCTLDLSESKNLEARVRS 361 Query: 322 TPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 T E + P + G L Y N + T E G L Sbjct: 362 TDEHYRFLAESIPQIVWTARPDGALDYYNRRWYDYTGLTPQQS-EGWGWQPVLHPEDL-- 418 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + +K + + R + ++ + + G + Sbjct: 419 -DRCLKYWRQAVATGSSYEIEYRFR--RAGDGAYRWHLGRALPMRDREGQIVKWFGTSTD 475 Query: 437 DVDTRINKRKM------EIEVMQLCSILEATSDGIAIINR-------------------- 470 D + ++ + + + SIL ++ D ++R Sbjct: 476 IDDQKRAAAELAAREQAQRFLAEAASILASSLDYTVTLDRVAQLTVPLLADWCSVDMVSE 535 Query: 471 EGII-------LSTNRAVS-----KLFGYPVEDILR-----KPFTVFLEQNTPSVMN--- 510 +G I + +A+ + + + + + + Sbjct: 536 DGGIEKLVIAHVDAQKALQIRELQRRYPFDPREASGVANVLRTGRSEFYPKITDELLIAI 595 Query: 511 ----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 +L + L + ++L + + D++ Sbjct: 596 ARSPEHLELLRKAGFSAALLVPLTARGRTFGAITLVMSDSGRRYGRTDLALAEDLACHAA 655 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + A + + K +FLA VSHE+RTPL AI+G++++++ ++ Sbjct: 656 IAIDNARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDA---ESQARA 712 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+R+G ++ D+LD+S+I +GK+ L P+ L + EA+ V L + K I + Sbjct: 713 LETIERNGRAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHIAL 772 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + D ++Q+ N+LSNAI FTP GG+I + +L VRD+GV Sbjct: 773 HCTLDAEAASVSGDPARLQQVVWNLLSNAIKFTPEGGRIDVRLA-ADGASALLSVRDSGV 831 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805 G+T L + F Q S G GLGL + + +V+ + G S P +G L Sbjct: 832 GITPEALPYIFERFRQADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGALFA 891 Query: 806 IIFP 809 + P Sbjct: 892 VRLP 895 Score = 94.7 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 38/435 (8%), Positives = 106/435 (24%), Gaps = 27/435 (6%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP- 231 RE RG + R + +F L I Sbjct: 85 RELEQARG-----EAAERHRVETALCRSEARFRQLVAENLIAIGFGDCAGMIVEANDAFL 139 Query: 232 ---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL--TSEESSLPEQEDFHTINLNQYTKK 286 + R + + + + ++ + S + P ++++ + + Sbjct: 140 QLVGYNREELAAGRVRWAQMTPPEYRERDEQAMAELASTGACRPYEKEYIHKDGRRVPIL 199 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346 L+ + + H A + + + AN Sbjct: 200 IGATLLEGGERVACFVFDLGGHRRARADLERANERFQLAAKAAGCLVYDWD----LEANR 255 Query: 347 -----SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 L L Y + + E A + D + + A + Sbjct: 256 VEHAYGLLELLGYNAEEISEPAHLWWA--EQIHPDDRERANAEVWAALQDAEMPNYAIEY 313 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 ++ + + + + + + G + +++ + ++ + E+ Sbjct: 314 RVRNRQGHHINVCDRGVVRRAPDGRAIRVVGCTLDLSESKNLEARVRSTDEHYRFLAESI 373 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + +G + NR G + + L Y + ++ Sbjct: 374 PQIVWTARPDGALDYYNRRWYDYTGLTPQQSEGWGWQPVLHPEDLDRCLKYWRQAVATGS 433 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577 +E + + + T DI + K+ +L+ ++ Sbjct: 434 SYEIEYRFR-RAGDGAYRWHLGRALPMRDREGQIVKWFGTSTDIDDQKRAAAELAAREQA 492 Query: 578 AEKESSHKSDFLARV 592 + S + + Sbjct: 493 QRFLAEAASILASSL 507 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 48/410 (11%), Positives = 94/410 (22%), Gaps = 14/410 (3%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 + F + W G L + G + G V +D Sbjct: 366 YRFLAESIP-QIVWTARPDGALDYYNRRWYDYTGLTPQQSEGWGWQPVLHPEDLDRCLKY 424 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + Y + G Y ALP+ R + + FG Sbjct: 425 WRQAVATGSSYEIEYRFRRAGDGAYRWHLGRALPMRDREGQIV--KWFGTSTDIDDQKRA 482 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 A ++ L E +S + L + + + Sbjct: 483 AAELAAREQAQRFLAEAASILASSLDYTVTLDRVAQLTVPLLADWCSVDMVSEDGGIEKL 542 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + L + F + G + K + E L Sbjct: 543 VIAHVDAQKALQIRELQRRYPFDPREASGVANVLRTGRSEFYPKITDELLIAIARSPEHL 602 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL---- 369 + + P+ + G + + E + + Sbjct: 603 ELLRKAGFSAALL--VPLTARGRTFGAITLVMSDSGRRYGRTDLALAEDLACHAAIAIDN 660 Query: 370 --LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L N + S +A L Q R L Sbjct: 661 ARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDAESQARALETIERNG 720 Query: 428 MPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGIAIINREGII 474 QN + + +D K K+++ + L +++E D + + + I Sbjct: 721 RAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHI 770 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 23/208 (11%), Positives = 64/208 (30%), Gaps = 5/208 (2%) Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-EDV 438 A + + ++R + + + ++ + Q + + E Sbjct: 36 AWERLRRQAAERGISRSEIVEQFARAEEPDDSSLERRVLDLERQNEQLRRELEQARGEAA 95 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + + ++ I + G+I+ N A +L GY E++ Sbjct: 96 ERHRVETALCRSEARFRQLVAENLIAIGFGDCAGMIVEANDAFLQLVGYNREELAAGRVR 155 Query: 499 V--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + E+ S + EK + K+ + + + I L + Sbjct: 156 WAQMTPPEYRERDEQAMAELASTGACRPYEKEYI--HKDGRRVPILIGATLLEGGERVAC 213 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584 + D+ ++ + L A + + + Sbjct: 214 FVFDLGGHRRARADLERANERFQLAAKA 241 >gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 614 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 18/387 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + +E + + D I+ R G + + A L G P ++ Sbjct: 189 RTGTSLLNVEEDRYRLLARNMCDVISRHRRNGAVQFISPAAEALLGVPASELQDHGLFDR 248 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEK------LLSLRIIIKKLP-- 549 + L + Q++E + + + + + + L Sbjct: 249 VHVADRPAYLTALAAAALGNDGQSVEFRLRRDVARASQGEARHSADFIWVEMRCRPLEPA 308 Query: 550 ------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 M DI+E K +++ L A AE+ + K+ FLA +SHE+RTPL AI Sbjct: 309 SAAGTSAEPEVVAVMRDITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAI 368 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFSE++ + L R EYA I+ SG +L +VN +LDISK+ESG + EP + Sbjct: 369 IGFSEMMVQEDALSLDAARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFA 428 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 E + + +L+ L A + I + T ++P+I D R+ +QI LN++SNA+ FT GG Sbjct: 429 PREVLLNSSNLLALKARDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGG 488 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++ IS + V LRV D GVG+ +L++ PF Q + Q R EGTGLGL + K+ Sbjct: 489 RVTISARVEGSRMV-LRVMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKS 547 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V + G+ + S +GT + ++ PL Sbjct: 548 LVALHRGEIDVQSKVEEGTTVTVMLPL 574 >gi|147677757|ref|YP_001211972.1| hypothetical protein PTH_1422 [Pelotomaculum thermopropionicum SI] gi|146273854|dbj|BAF59603.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI] Length = 796 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 120/741 (16%), Positives = 245/741 (33%), Gaps = 57/741 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGK 146 D + I+ G +++G+ + + L P I +K Sbjct: 90 DTSSKIVYINNGFENITGYGK-ELLGLEYKALEEKLFPLPERRNLDIEKAIKNCQQMNEH 148 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 I + + LP+ S +G + + R F Sbjct: 149 RRSL-ISKDGRVITVKAKILPLKSSKGALTGT----LCLFCETASYLELQNLRQKTHFFL 203 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + IF+ S K V D + Sbjct: 204 DFTSSCVLAVDNRLRVTIFNAASEKLTGLKKEDVLGRHVTEIFNDYEAENYPIIKTIITG 263 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----- 321 + E +N T + ++ + + S S +E Sbjct: 264 ETFHNYEVTLFVNGQMRTLLFDTALITDDGGKVNGAIGIFKDISESKRIEEELKRTVFAY 323 Query: 322 ------TPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVD---DIEIAGGLSTLLD 371 ++ P+ Y + + N LT Y+ + ++ + Sbjct: 324 SKEKSFMRNVLNNLPLAIITYDRDLMPTFMNKMAEDLTGYRFEEFASSMQNISANEPVFP 383 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + S + A + + TI ++ ++ + E Sbjct: 384 SSDFSRHLAEAVLS------SGEPIFGEQRTITSRDGTAIPVSLDIHPIYSALREKNGVM 437 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + + R ++ + + IL + + + I+ I+ N +LFG + Sbjct: 438 IIARDIREIREHEHLLYLSK----CILNSLNSAVISIDANYRIIIFNPFAERLFGISADH 493 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ K L L + + + EE L + + + Sbjct: 494 VIGKNINEVHLPFLKE--ERMLQNTLEIGTGFQFTEAAIQVKGEEITLLINSAVVRDKDD 551 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DI+E ++ + + +++A A ++HE++ PLTA+ GF+++ Sbjct: 552 NIVGAVAIFQDITELRRTQKAVRERERLAI-----IGQMAAGMAHEVKNPLTAVRGFTQL 606 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +K + NP+ + YA I + ++ + L +++ + SL+ V Sbjct: 607 LKEKC---PDNPKLVSYAEIILEEIDRANSVITEFLQLARP----KQPALKRQSLNSLVE 659 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E ++V A K I + +N+P + D +KQ+ LN+ NAI P GG +++ T Sbjct: 660 EIAAIVSSQAFLKNIKVEYECVDNLPLCMLDRDQIKQVLLNMCQNAIEAMPGGGILVMKT 719 Query: 730 T-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + +EV + + DTG G+ ++EK PF GTGLGL ++ +++ A+ Sbjct: 720 GFLPAQKEVFIDINDTGCGIPREQIEKIGVPFFTTKAD------GTGLGLSISYSIIGAH 773 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G+ + S KGT I P Sbjct: 774 KGRVEVDSKEGKGTKFRIYLP 794 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 44/394 (11%), Positives = 104/394 (26%), Gaps = 32/394 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + K G ++G + ++ + + I ++ T++ Sbjct: 213 VDNRLRVTIFNAASEKLTGLKKEDVLGRHVTEIFNDYEAENYPIIKTII-TGETFHNYEV 271 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + G + D A I + +G GI KR +S Sbjct: 272 TLFVNGQMRTLLFDTAL--ITDDGGKVNGA--IGIFKDISESKRIEEELKRTVFAYSKEK 327 Query: 209 EIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLT--------------EYYAHKDDV 253 + + + + P +M ++ E D Sbjct: 328 SFMRNVLNNLPLAIITYDRDLMPTFMNKMAEDLTGYRFEEFASSMQNISANEPVFPSSDF 387 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + +L+S E EQ + + + + +E + Sbjct: 388 SRHLAEAVLSSGEPIFGEQRTITSRDGTAIPVSLDIHPIYSALREKNGVMIIARDIREIR 447 Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + L+ ++ + ++ + NP L + I L Sbjct: 448 EHEHLLYLSKCILNSLNSAVISIDANYRIIIFNPFAERLFGISADHVIGKNINEVHL--- 504 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + ML + IQ E + ++ + Sbjct: 505 -----PFLKEERMLQNTLEIGTGFQFTEAAIQVKGEEITLLINSAV-VRDKDDNIVGAVA 558 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 I + + R ++ + E +L +I+ + G+A Sbjct: 559 IFQDITELRRTQKAVR-ERERL-AIIGQMAAGMA 590 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 57/192 (29%), Gaps = 16/192 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 IDA+ + + + G A +IG + +V + + + + L+ + Sbjct: 470 IDANYRIIIFNPFAERLFGISADHVIGKNINEV-HLPFLKEERMLQNTLEIGTGFQFTEA 528 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK----- 203 ++G + + + + + ++ G I + + ++ Sbjct: 529 AIQVKGE--EITLLINSAVVRDKDDNIVGA--VAIFQDITELRRTQKAVRERERLAIIGQ 584 Query: 204 -FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + K + + + ++ P K+ S E + D + L Sbjct: 585 MAAGMAHEVKNPLTAVRGFTQLLKEKCPDNP-----KLVSYAEIILEEIDRANSVITEFL 639 Query: 263 TSEESSLPEQED 274 P + Sbjct: 640 QLARPKQPALKR 651 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQ 503 +ME E+ L +LE G+ + + I+ N + GY E + K L Sbjct: 67 RMEGEINWLRGVLEGLPLGVVVFDTSSKIVYINNGFENITGYGKELLGLEYKALEEKLFP 126 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 I + +Q E +K+ ++++++ I L S Sbjct: 127 LPERRNLDIEKAIKN--CQQMNEHRRSLISKDGRVITVKAKILPLKSSKGAL 176 >gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 946 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 176/392 (44%), Gaps = 19/392 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 G ++ ++ + ++E+ + + +G ++ N+ S+ G + Sbjct: 413 FAGKTAAELQREQAIAELRNSEERYRYLVESIPQLVWTADSQGKVMDVNQRWSEFTGLTL 472 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + + + + +N I++ + + + L Sbjct: 473 VQVQTQGWETVVHPEDITTLNRKW--IIAQENATNYQAEGRMRRNDGVYRWHLHQAVPLK 530 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRT 598 + + T DI KQ + + ++ AE+ + K +FL+ +SHE+R+ Sbjct: 531 NNRGKIIKWFGTATDIENAKQLEQQRLQLLEQERTVREKAERANRIKDEFLSILSHELRS 590 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I+G++++++ ++ L + E I+R+ L +++DLLD++KI GK+ L+ Sbjct: 591 PLNPILGWTQLLQTKK---LEEQQVEEALAVIERNVKLQTQLIDDLLDMAKILRGKITLN 647 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 PV L + AI +V++ A K I ++ + +NN I D ++QI N+LSNAI F Sbjct: 648 MTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNNC-YIKGDQGRIQQIIWNLLSNAIKF 706 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 TP GG+++I+ N++V + V DTG G+ L + F Q S G GLGL Sbjct: 707 TPEGGKVMINLEQV-NQQVQITVTDTGKGIDPEFLPHIFESFRQEDVSITRHYGGLGLGL 765 Query: 779 PLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 + K +VDA+ G S KG I P Sbjct: 766 SIVKYLVDAHGGTIVADSLGEDKGATFLITLP 797 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 13/193 (6%) Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 A L I + E L I ++ Q ++ + + + + ++ V Sbjct: 84 IRDIGAGLRIILFVSEGILISHLIGNLRSAQEKIRKNFEKLQVTETEIKDLNQTLQRRVN 143 Query: 453 QLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVE--------DILRKPFTVFLEQ 503 +L ++ + IAI + + ++ N A S L P P + Sbjct: 144 ELQTLFDTIPINIAIAEDIDCRVVRLNPAFSHLLKMPKNANASAVMLSEHPDPPFTVYQN 203 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMH 559 + +S + + K++K+ +L L Sbjct: 204 GQRLTGENLPQMYVSKHGVELRDIEIEIVRKDKKVFNLYGHAIPLFDELGNPRGSVGVYV 263 Query: 560 DISEWKQEKNKLS 572 D+S+ K+ + L Sbjct: 264 DMSDRKRIEMALY 276 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/183 (12%), Positives = 58/183 (31%), Gaps = 4/183 (2%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 + Q + +SE + + + W D+ G + ++++ + G ++ Sbjct: 417 TAAELQREQAIAELRNSEERYRYLVESIP-QLVWTADSQGKVMDVNQRWSEFTGLTLVQV 475 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 V I N ++ ++N + +Y A+P+ + Sbjct: 476 QTQGWETVVHPEDITTLNRKW-IIAQENATNYQAEGRMRRNDGVYRWHLHQAVPLKNNRG 534 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + + FG +L ++ + E + + ++ E I S + P Sbjct: 535 KII--KWFGTATDIENAKQLEQQRLQLLEQERTVREKAERANRIKDEFLSILSHELRSPL 592 Query: 234 LRM 236 + Sbjct: 593 NPI 595 >gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1888 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 118/837 (14%), Positives = 262/837 (31%), Gaps = 132/837 (15%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D +I++ L + G IG + + + +L + Sbjct: 813 VDNQLRFVQINQVLAEINGISQEAHIGKTIHEALPKIASVVEPFYQQVLLTGEPILNQEL 872 Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---- 203 I+ ++ ++ PI + SG G +V ++ + R L ++ Sbjct: 873 SAASIKQPDIIRHFLVSYFPIPGEDDRLSGV-GTVLVEISELQAALRERQAALRERKHVE 931 Query: 204 -FSHLHEIKKGHSSVEKE-----KYDIFSQQSPPPHLRMKNKVSSLTE-----------Y 246 L + + S + + + Sbjct: 932 QELRLANERLQYLLTSSPVVIYSSKKTLGNFSTTFISKNVKAMVGYEAQEFVENPNFWLH 991 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----Y 302 + H +D+ + E+ + + + + + +++ + E + Sbjct: 992 HVHPEDIELISEKFSQLVEQEYTSYEYRWLHADGTYHWFYEKMRLIRDETGNPIECVGYW 1051 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + G + P F GN+ Y N + ++ ++++ Sbjct: 1052 TDINDAKLAELALQTGRQRYQLLAETSPACIFHTDVDGNVLYFNQRWSEISGC-NLEESL 1110 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 G + + + + H + + + + Sbjct: 1111 GTGWTKAVHPDDREQLLLTWNQARVAKV------MYKYEHRFLCDDSTVVWVICQALPEF 1164 Query: 422 NQFPENMPQNGIEPEDVDTRINKRK----MEIEV-----------------------MQL 454 E G + + ++ + E E +L Sbjct: 1165 RDDGEIKGYIGTITDITERKLAEEALRESAERERAIAQVIQRMRQTLDLETIFAATTQEL 1224 Query: 455 CSILEATSDGIAIINREGIILSTNRA----VSKLFGYPVED--------ILRKPFTVFLE 502 +L + N + + + L D + L+ Sbjct: 1225 RQVLNCDRVVVYRFNPQWNGEFVSESVGNGWISLIEEHNNDPNLTEGVLQQGRCLAKILD 1284 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----- 557 + + I Q + + I + + + Y + Sbjct: 1285 SGDNQAEDADMQAIQDGIYAQGATFRCVPDIYNAEFHPSYISLLERFQAKAYIIVPILYG 1344 Query: 558 -----------MHDISEWKQEK----------------------------NKLSHAKKIA 578 D +WK + L A A Sbjct: 1345 SQIWGLLASYQNSDSRQWKPGEINIVVQIGNQLGVALQQAQLLAQTQRQSQALQEAVITA 1404 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + KS+FLA +SHE+RTPL AI+GF++++ + R + + I+R+G +L Sbjct: 1405 DAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDRALST---EHQQNLAIINRAGEHLL 1461 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 +++ND+L++SKIE+G++ L+ L + +++ A K + + + + +P+ I Sbjct: 1462 NLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLELNFEYTSYLPQYI 1521 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMT 749 AD ++Q+ LN+L NAI FT +G ++++ + E + V DTG G+ Sbjct: 1522 QADESKLRQVLLNLLGNAIKFTDTG-RVMLRVAMENMGEKILPHPPHLFFEVTDTGRGIA 1580 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 E+ + FGQ ++ + +GTGLGL +++ V+ G + S +G+ Sbjct: 1581 PQEINLLFEAFGQTETGRKSQ-QGTGLGLAISRKYVELMGGDISVTSIIGEGSTFAF 1636 Score = 84.3 bits (207), Expect = 8e-14, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 24/272 (8%) Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 +D+ V G++ Y F ++ + + TL K Sbjct: 86 GVLDELSEEVNVCDLGDVDYITQPF------QAKEVLLRIQNQLTL-QRLKKQLKEQNSQ 138 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + +R +A L Q P E + + Sbjct: 139 LQEEIKERQRVAVELNLRNQQIE-----------EIFTEIPPSLSKAFCREVYQNERLLV 187 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++ Q ++E + D I ++ +G+I N AV +++GY ++++ + F+ Sbjct: 188 EAALKKSESQYRHLVETSQDMIWSVDIDGLITFVNPAVKQIYGYEPQEMIGRTLIDFISP 247 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMH 559 + +L + T K+ LL L L T Sbjct: 248 QQVTKDKVVFERVLHGKP--IFQHETTCVAKDGTLLYLMFNAIALRNEEGLVIGMTGTAS 305 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 +I++ + + L + + + Sbjct: 306 NITQRRGIEKLLQESAIKLRNHNLVLTQLAQN 337 Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats. Identities = 48/589 (8%), Positives = 140/589 (23%), Gaps = 95/589 (16%) Query: 72 NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131 + F P P + + E+++ + G ++I +++ ++ + N Sbjct: 506 SAFRSSPDPIALITV----PNKRFVEVNDSFCRFFGYSRSQVIDRTDQELNIWVNPEEYN 561 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVD 190 + +L++ + L+A I E G G Sbjct: 562 FLTQMLQKTKAIRNYEIDVCTC-SGEIRTTLLSAEMI-----EIDGKCYVLGTAKDITER 615 Query: 191 NDPRALGKRLDKKFSHLHEIKK-------------------------------------- 212 + L + Sbjct: 616 KQAENESRLLLLTTQAITRANDVNSSLALVLRLICHTIGWDFGEAWIPNEDSSVLEHSLG 675 Query: 213 --GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD----------DVLKTEKYP 260 G S +E P + + +V E +D + K Sbjct: 676 WYGEQSNLEEFCRHSQIVKFPLGVGLPGRVWQNQEPEWIEDVSEVTEPIFLRSQQAAKVG 735 Query: 261 LLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEG 318 L L + + + + L L +L Sbjct: 736 LKAGFGVPILAGNKVLAVLVFFKRSSVLVDRRLLLLVNAVAAQLGGLIERKTLEQELALR 795 Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E P+ + + N + S + L S Sbjct: 796 EARLNAFFTGAPVGMNIVDNQLRFVQINQVLAEINGI-SQEAHIGKTIHEAL--PKIASV 852 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN------ 431 +L + + Q + +++ P + + Sbjct: 853 VEPFYQQVLLTGEPILNQELSAASIKQPDIIRHFLVSYFPIPGEDDRLSGVGTVLVEISE 912 Query: 432 ------GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII-----LSTNRA 480 + + + ++++ + +L +L ++ + I + + + ++ Sbjct: 913 LQAALRERQAALRERKHVEQELRLANERLQYLLTSSP--VVIYSSKKTLGNFSTTFISKN 970 Query: 481 VSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 V + GY ++ + P + + +++ ++++ + + Sbjct: 971 VKAMVGYEAQEFVENPNFWLHHVHPEDIELISEKFSQLVEQEYTS---YEYRWLHADGTY 1027 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++ + + DI++ K + L ++ + + Sbjct: 1028 HWFYEKMRLIRDETGNPIECVGYWTDINDAKLAELALQTGRQRYQLLAE 1076 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 13/160 (8%), Positives = 43/160 (26%), Gaps = 5/160 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 ++ D G + ++ + G + +G + + + Sbjct: 1082 IFHTDVDGNVLYFNQRWSEISGCNLEESLGTGWTKAVHPDDREQLLLTWNQARVAKVMYK 1141 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + T V + ALP + + E G+ G + + ++ Sbjct: 1142 YEHRFLCDDST--VVWVICQALPEFRDDGEIKGY--IGTITDITERKLAEEALRESAERE 1197 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + ++ + + + + ++V Sbjct: 1198 RAIAQVIQRMRQTLDLETIFAATTQELRQVLNCDRVVVYR 1237 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 1/133 (0%) Query: 453 QLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L S ++ D IA+I + N + + FGY ++ + P N Sbjct: 503 KLASAFRSSPDPIALITVPNKRFVEVNDSFCRFFGYSRSQVIDRTDQELNIWVNPEEYNF 562 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + E + E + L + ++ T DI+E KQ +N+ Sbjct: 563 LTQMLQKTKAIRNYEIDVCTCSGEIRTTLLSAEMIEIDGKCYVLGTAKDITERKQAENES 622 Query: 572 SHAKKIAEKESSH 584 + + Sbjct: 623 RLLLLTTQAITRA 635 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 40/428 (9%), Positives = 100/428 (23%), Gaps = 78/428 (18%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144 W++D G + ++ + + G +MIG L D + + + +L + + Sbjct: 209 IWSVDIDGLITFVNPAVKQIYGYEPQEMIGRTLIDFISPQQVTKDKVVFERVLHGKPIFQ 268 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---- 200 +TT +GT LY+ A+ + + G G L + Sbjct: 269 HETTCVAKDGTLLYL--MFNAIALRNEEGLVIGMT--GTASNITQRRGIEKLLQESAIKL 324 Query: 201 -----------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------------------P 231 + + ++K + + + Sbjct: 325 RNHNLVLTQLAQNQILYQGDLKAALGKITETAVKNIGMERASVWLYDETGLKIECFDLFE 384 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF---------------- 275 ++ L+E + P+ + + P +F Sbjct: 385 GSRNQHSEGLVLSEADYPAYFAALQQDQPIAADDAHTDPRIREFSPSYSRLNITSILYTP 444 Query: 276 -------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + ++ L + A E Sbjct: 445 IRQEGKTVGVLCLEAVGVAHHWTLEDQNFARSLGNLVSLVLEAKERQRAEAARRASEEKL 504 Query: 323 PETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 P P + + N SF Y I+ + P+ Sbjct: 505 ASAFRSSPDPIALITVPNKRFVEVNDSFCRFFGYSRSQVIDRTDQELNIWVNPE----EY 560 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + T E + + + G + + Sbjct: 561 NFLTQMLQKTKAIRNYEIDVCTCS--GEIRTTLLSAEMIEIDGK---CYVLGTAKDITER 615 Query: 441 RINKRKME 448 + + + Sbjct: 616 KQAENESR 623 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 55/166 (33%), Gaps = 15/166 (9%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++++ + +L + G+ I++ + + N+ ++++ G E + K Sbjct: 784 ERKTLEQELALREARLNAFFTGAPVGMNIVDNQLRFVQINQVLAEINGISQEAHIGKTIH 843 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIIIKKLPFSS-- 552 L SV+ + ++L L + ++ ++ + + Sbjct: 844 EAL-PKIASVVEPFYQQVLLTGEP-ILNQELSAASIKQPDIIRHFLVSYFPIPGEDDRLS 901 Query: 553 CYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + +IS E + + H ++ + L Sbjct: 902 GVGTVLVEISELQAALRERQAALRERKHVEQELRLANERLQYLLTS 947 >gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1] gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1] gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti M13/05/1] gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti M644/93/1] Length = 783 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330] gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str. 870] gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513] gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686] gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis M163/99/10] gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94] gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str. 292] gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis M292/94/1] gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str. Ether] gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94] gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str. C68] gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99] gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99] gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str. 16M] gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330] gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941] gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840] gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis ATCC 23365] gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457] gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915] gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M] gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40] gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 4 str. 292] gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 2 str. 86/8/59] gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 6 str. 870] gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 9 str. C68] gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti B1/94] gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis B2/94] gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M163/99/10] gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99] gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 5 str. 513] gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis bv. 3 str. 686] gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 3 str. Ether] gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella melitensis bv. 1 str. Rev.1] gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9] gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella pinnipedialis M292/94/1] gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC [Brucella abortus bv. 5 str. B3196] gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28] gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90] Length = 783 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus bv. 3 str. Tulya] Length = 783 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 778 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G + + N ++ GY ++I+ K F+VF + Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I +S DIS+ + + L Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + ++AD + + Q+ LN+LSNAI + GQ+ I + V + V DTG G+ Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TPA+G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623 Query: 811 YDTSHP 816 P Sbjct: 624 VLVHAP 629 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E + P Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC 6506] Length = 677 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 92/485 (18%), Positives = 194/485 (40%), Gaps = 33/485 (6%) Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--- 409 +++ + LLD + + ++ DR+ + + N Sbjct: 41 GAEALRCLLNEDFAVILLDVQMPAMDGFETATLIRSRDRSRLTPIIFITAFTSNDSQVFK 100 Query: 410 -----SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSI 457 ++ F P E + + + V+ + ++ + ++ Sbjct: 101 GYSLGAVDYLFKPIEAEILTSKVAVFVELFQKTVEVKRQAAELAAVNTELSKSEERFRTL 160 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + GI + + EG N + G +E+ L + + + + Sbjct: 161 SACSPLGIYLADVEGRCTYINPRCKGICGLNLEEGLIDVWQRSVHPEDRDRVVADWLAWM 220 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL-- 571 + E + + + + + + T+ DI++ KQ + + Sbjct: 221 ETGQEYSEEFRL---SANGSMRWVHVQSSPMFSDLGKPIGHVGTIIDITDRKQAEEERGR 277 Query: 572 ----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 A+ AE+ + K +FLA +SHE+RTPL AI+G+S++++ ++F + Sbjct: 278 LIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLLRAKKFDQATIDKA---L 334 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I+R+ ++ D+LD+S+I GK+NL+ P+ L + AI ++ A K I I Sbjct: 335 ETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEVAIDALRPLAETKSIAIE 394 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 ++I +++ D ++Q+ N+LSNAI FTP GG++ + + +++ DTG+G Sbjct: 395 FVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLELV-GDYAEIQIIDTGIG 453 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEI 806 ++ L F Q ++ G GLGL + + +V+ + G + G + Sbjct: 454 ISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGGTVGAENNSSGIGAKFTV 513 Query: 807 IFPLY 811 P+ Sbjct: 514 SLPIA 518 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 36/357 (10%), Positives = 88/357 (24%), Gaps = 15/357 (4%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 NT SE F + + D G I+ G + + Sbjct: 147 NTELSKSEERFRTLSACSPLG-IYLADVEGRCTYINPRCKGICGLNLEEGLIDVWQRSVH 205 Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 D Y + G+ +V + + P++S + G G Sbjct: 206 PEDRDRVVADWLAWMETGQEYSEEFRLSANGSMRWVHVQSS--PMFSDLGKPIGH--VGT 261 Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSS 242 + RL + HE ++ + ++ + + P + + +K+ Sbjct: 262 IIDITDRKQAEEERGRLIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLLR 321 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKES 299 ++ D S+ + + D I + + L + ++ Sbjct: 322 AKKFDQATIDKALETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEVAIDA 381 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY------ANPSFLLLTK 353 L+ ++ D+ + + + L+ Sbjct: 382 LRPLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLELVGD 441 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 Y + I+ G+S + + H ++ + Sbjct: 442 YAEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGGTV 498 >gi|120611088|ref|YP_970766.1| signal transduction histidine kinase with CheB and CheR activity [Acidovorax citrulli AAC00-1] gi|120589552|gb|ABM32992.1| signal transduction histidine kinase with CheB and CheR activity [Acidovorax citrulli AAC00-1] Length = 1535 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 96/644 (14%), Positives = 204/644 (31%), Gaps = 35/644 (5%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 LG + + ++++ S + + Sbjct: 762 DELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVTLFHLISTDVGRPLSNLRTQLQ 821 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSL 311 E + + + N Y + ++ + ++ Sbjct: 822 YPELAEDARRVLERLALVEREVGASDGNWYLVRMLPYRTLDDRIAGVVLTFVDISERKQG 881 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E+ V++ + G++ + N + + Y + I T L Sbjct: 882 QEALRRSEDRFSAIVNQAVVGVVQTDLEGHITFVNRHYSHMLGYGHDELIG------TQL 935 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + ++ R ++ + L + A+ Sbjct: 936 LDLIHPADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGST-LWLHNSVSYLADAHGGPTAS 994 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPV 489 + + + + + + +L ++E + I + + I + N ++ GY Sbjct: 995 IVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRITTWNSGAERILGYSE 1054 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + + + + +L L+ L K+ + + Sbjct: 1055 NEAVGQLADMIFTPEDRAAGAPLSETRTALATGGALD-DRLHQRKDGSRFWASGALMPMH 1113 Query: 550 FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------------KSDFLAR 591 + + + D S+ + + L ++ K FLA Sbjct: 1114 DGADAVVGFVKILRDQSDQRASQQALEQSRADLLTALRENEEARAALQAADATKDRFLAV 1173 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+R PL +I G S V+ + P + A + R + +++DL+D+S++ Sbjct: 1174 LSHELRNPLASIAGASAVLATEGAAPADRDQA---ARIVQRQARAMAVLLDDLMDLSRLR 1230 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 G+M L V LDE V A+ + AD + Q+ N+ Sbjct: 1231 LGRMVLQQRDVLLDEIVEAALEATLGAIQAAGHEFVQDLPGEAVLLHADPVRIAQVLANL 1290 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA +TP G++ +S T L V D G+GM ++ F Q P++ Sbjct: 1291 LSNAAKYTPDHGRVRLS-AWTEGGWFHLCVEDNGIGMDPDTVDDMFTMFSQSPDAGSRHT 1349 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814 +G G+GL L + +V+ + G S P +G+ + PL S Sbjct: 1350 QGLGIGLALVRNIVEMHQGTVRGESAGPGQGSRFTVQLPLPVQS 1393 Score = 137 bits (345), Expect = 9e-30, Method: Composition-based stats. Identities = 64/495 (12%), Positives = 137/495 (27%), Gaps = 56/495 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + +S + + + ++ L + + L R G+ Sbjct: 577 VDGEQNILHMSPSAGRFLAFHGGELS-RNLMRLIHPAL---RIELRAALYRIG-RTGQPM 631 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 VP++ A G V V LG L + Sbjct: 632 RL------TAVPVETAG----------------GTVRVAPEVRPVPDLGAGLSLVLLYTL 669 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + D ++Q + ++ L + + L S E Sbjct: 670 PDLPSSALAAEVPQDTAAEQ-------LDRELELLNAQLRSTIEQYEASTEELRASNEEL 722 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E+ + T ++ ++ L + A D + + Sbjct: 723 QAMNEELRSATEELETNREELQSINEELTTVNHELKSKVDELGHANSDMQNLMDATAI-- 780 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 F+ + PS + L S D L T L P+L+++ L Sbjct: 781 --ATVFLDRDLRITRFTPSAVTLFHLISTDVGRPLSNLRTQLQYPELAEDARRVLERLAL 838 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 +R A + N + +P+ + + + + + + Sbjct: 839 VEREVGA----------SDGNWYLVRMLPYRTLD--DRIAGVVLTFVDISERKQGQEALR 886 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + +I+ G+ + EG I NR S + GY ++++ + + Sbjct: 887 RSEDRFSAIVNQAVVGVVQTDLEGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQL 946 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564 H + + K+ L L + L + + +DISE Sbjct: 947 SAHLMRRLAEHGEP--FHIEKRCLRKDGSTLWLHNSVSYLADAHGGPTASIVVCNDISER 1004 Query: 565 KQEKNKLSHAKKIAE 579 K+ +N L + + Sbjct: 1005 KRAENALRESTERLR 1019 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 28/378 (7%), Positives = 102/378 (26%), Gaps = 13/378 (3%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGK 146 D G++ ++ +G ++IG +L D+ + H+ L ++ + Sbjct: 905 QTDLEGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQLSAHLMRRLAEHGEPFHIE 964 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ L++ ++ L + + + + + ++ Sbjct: 965 KRCLRKDGSTLWLHNSVSYLA--DAHGGPT--ASIVVCNDISERKRAENALRESTERLRL 1020 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLL 262 + E ++ + + + + V L + +D Sbjct: 1021 VIENAVEYAIFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSET 1080 Query: 263 TSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ +D + +++ + + + ++ S + Sbjct: 1081 RTALATGGALDDRLHQRKDGSRFWASGALMPMHDGADAVVGFVKILRDQSDQRASQQALE 1140 Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + A FL + ++ + + G S +L + Sbjct: 1141 QSRADLLTALRENEEARAALQAADATKDRFLAVLSHELRNPLASIAGASAVLATEGAAPA 1200 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + + +A + ++ E + + Sbjct: 1201 DRDQAARIVQRQARAMAVLLDDLMDLSRLRLGRMVLQQRDVLLDEIVEAALEATLGAIQA 1260 Query: 439 DTRINKRKMEIEVMQLCS 456 + + E + L + Sbjct: 1261 AGHEFVQDLPGEAVLLHA 1278 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 45/403 (11%), Positives = 107/403 (26%), Gaps = 27/403 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 A H + + E+ +++ P + L Sbjct: 516 AAVALHAQHTAHQGPVVHSGAMVPYFADAERPAVRAMGEKALPWGEVHLRLLEQLAPPSI 575 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D + E + + L+ + + + Sbjct: 576 LVDGEQNILHMSPSAGRFLAFHGGELSRNL------MRLIHPALRIELRAALYRIGRTGQ 629 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 P TV P V G + L L ++ D+ + + Sbjct: 630 PMRLTAVPVE--TAGGTVRVAPEVRPVPDLG-------AGLSLVLLYTLPDLPSSALAAE 680 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 + + ++ + T A ++ + E AM + N Sbjct: 681 VPQDTAAEQLDRELELLNAQLRSTIEQYEASTEELRASNEELQAMNEELRSATEELETNR 740 Query: 429 PQNGIEPEDV-----DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + E++ + + ++ + ++++AT+ ++R+ I + Sbjct: 741 EELQSINEELTTVNHELKSKVDELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVT 800 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 LF D+ +P + Q + +L +E+ + +R+ Sbjct: 801 LFHLISTDV-GRPLSNLRTQLQYPELAEDARRVLE--RLALVEREV--GASDGNWYLVRM 855 Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + LT DISE KQ + L ++ + Sbjct: 856 LPYRTLDDRIAGVVLTFVDISERKQGQEALRRSEDRFSAIVNQ 898 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 36/368 (9%), Positives = 96/368 (26%), Gaps = 41/368 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNT 142 ++ D + + + +G + +G + + + L Sbjct: 1030 IFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSETRTALATGGA 1089 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G+ A +P++ GF V + R +D RA + L++ Sbjct: 1090 L-DDRLHQRKDGS--RFWASGALMPMHDGADAVVGF-----VKILRDQSDQRASQQALEQ 1141 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + L + + K++ ++ + +L Sbjct: 1142 SRADLLTALRENEEARAALQA---------ADATKDRFLAVLSHELRNPLASIAGASAVL 1192 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 +E ++ +++ Q +Q ++ L S Sbjct: 1193 ATEGAAPADRD-------------QAARIVQRQARAMAVLLDDLMDLSRLRLGRMVLQQR 1239 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS----VDDIEIAGGLSTLLDAPKLSDN 378 +D+ + G + A F+ ++ D + IA L+ LL Sbjct: 1240 DVLLDEIVEAALEATLGAIQAAGHEFVQDLPGEAVLLHADPVRIAQVLANLLSNAAKYTP 1299 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWN----RENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + ++ + I + + + P + + Sbjct: 1300 DHGRVRLSAWTEGGWFHLCVEDNGIGMDPDTVDDMFTMFSQSPDAGSRHTQGLGIGLALV 1359 Query: 435 PEDVDTRI 442 V+ Sbjct: 1360 RNIVEMHQ 1367 >gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. phaseolicola 1448A] Length = 778 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G + + N ++ GY ++I+ K F+VF + Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I +S DIS+ + + L Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + ++AD + + Q+ LN+LSNAI + GQ+ I + V + V DTG G+ Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TPA+G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623 Query: 811 YDTSHP 816 P Sbjct: 624 VLVHAP 629 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E + P Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1039 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 113/677 (16%), Positives = 210/677 (31%), Gaps = 30/677 (4%) Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLD 201 W G N + + A R F F I+ R G Sbjct: 226 WEELGRRLQRVGANDAILLLSAYKDQRGVVRNFEEGLAF-ILRNTRSPVYHLWEHGMGKG 284 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + I + SP ++ ++ + + + Sbjct: 285 LLGGKLISHYEQGRLAADMALKILAGASPASLPVIEGNDANAYLFDYEVLRRHGISTHRI 344 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + + L +++ E Sbjct: 345 PQGSRVINEPESIWRDYWRELLVAVAFVAVLCVLVVVLLKHVLRLREARTE--IKRSETR 402 Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 D+ P+ Y G + N F L I + + Sbjct: 403 YRLVFDQSPLGLVQYDGDGIIIDVNERFAELCGASRDQIIG--------FNYINQMHDAR 454 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + +L + + + + + + GI + D Sbjct: 455 MLGAVLASLRGGIGGFEGVYTSPL--GKKTAFIRCLFKGVKAPAGDVFIGIGIIEDVSDR 512 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTV 499 + + + + L G N L + V+++ P + + Sbjct: 513 KQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSEEVNRILDLPEDYKPGLAEWLT 572 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-- 557 + L ++L +E + K LR + ++ S + Sbjct: 573 SFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLR-AVGRVDEGSGALVVGT 631 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D+ E K+ + +L AK A + K +FLA +SHEIRTPL I G ++ + P Sbjct: 632 FQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADASLAP 691 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R E A RS + D++ D+LDIS+I++GK+ + P L ++ + L Sbjct: 692 ----RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIP 747 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----- 731 A + + + IP R++ D ++Q+ N+L NA FT G + + H Sbjct: 748 SAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVL 806 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ V+ V DTG G+ + + K PF Q + +G GLGL + + ++ G Sbjct: 807 ANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIRVMGGH 866 Query: 792 FYIFSTPAKGTLIEIIF 808 S GT + Sbjct: 867 LAFESEAGTGTTVYFTL 883 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 92/364 (25%), Gaps = 15/364 (4%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T SE + + D G + +++E + G ++IG ++ + Sbjct: 394 TEIKRSETRYRLVFDQSPLGLV-QYDGDGIIIDVNERFAELCGASRDQIIG--FNYINQM 450 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + L+ + P+ ++ + + + F G GI+ Sbjct: 451 HDARMLGAVLASLRGGIGGFEGVYTSPLGKKTAFIRCLFKG--VKAPAGDV--FIGIGII 506 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + I K + D R+ + Sbjct: 507 EDVSDRKQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSE--EVNRILDLPEDYK 564 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A E P + + + I T+ + + S Sbjct: 565 PGLAEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLRAVGRVDEGS 624 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 DE + E V+ + F AN S + T + Sbjct: 625 GALVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTP------LNGIF 678 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G+ +L L+ M RS R + I L + IPF+ + Sbjct: 679 GMLRMLADASLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSI 738 Query: 425 PENM 428 + Sbjct: 739 RQVR 742 >gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC BAA-450] Length = 1103 Score = 339 bits (870), Expect = 1e-90, Method: Composition-based stats. Identities = 103/560 (18%), Positives = 215/560 (38%), Gaps = 38/560 (6%) Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 +N ++ + S + + L + ++ + + + VD + + Sbjct: 132 LNQADISQMKQVRQELKTSNQKLQQLVSNQNQRINEQEVQMGVMFEQAVDNM---LLLNA 188 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + N S L L ++ D + + + D + + Sbjct: 189 ELKVLDVNDSALSLFEHSKSDLLGLELTSLLYEFTENNIEDKLSSVEMYQ---------- 238 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 L + S ++ + + + ++ + ++ +L Sbjct: 239 EVPLDEVIKVSRTSDVLSLLGSVRYITMKTQKYIVLTLRDISKEQMAQNELRRSQSELEE 298 Query: 457 ILEATS-------DGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPS 507 ++ + + GI + LS + + +++G ++ + + + Sbjct: 299 VVRSLNLATQAGGIGIWSWDFTTNELSWDDRMYEIYGVDPDNCKNNYTMWQERVLEEDIF 358 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564 L + + E KE + + + + D+++ Sbjct: 359 TAEEALNKARENLTQFNSEFRIQLPDKEIRWIKAAANVLFDQDGTTPIGMGGINIDVTKE 418 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + L H +IA S KS FLA +SHEIRTP+ ++G ++ N Sbjct: 419 KNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESEL----NGEQK 474 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 I S +L I+ND+LD SKIE+G+M+L PV L + + + ++ L AN K I Sbjct: 475 SMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQANNKGI 534 Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSNE---E 736 + ++ ++P++ ++D + Q+ LN++ NA+ FT S G++ +S T ++ Sbjct: 535 ELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGKVWVSATLNQHDIAPY 594 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + + D G+GMT ++EK K F Q S GTGLGL + +++++ G ++ S Sbjct: 595 VEIIIEDNGIGMTEEQIEKLFKAFSQADTSTTRLYGGTGLGLSITRSLLEMMGGDIHVDS 654 Query: 797 TPAKGTLIEIIFPLYDTSHP 816 G+ + P + P Sbjct: 655 RFGVGSRFSVELPFIEVEEP 674 Score = 77.4 bits (189), Expect = 1e-11, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 91/295 (30%), Gaps = 30/295 (10%) Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + +++ +D ++ +FYANP+FL S I Sbjct: 18 APQQDDSIKTSVLDLLSDGMVIFDGQVGSNAIFYANPAFLKYYGLPSNQVIGRNII--EF 75 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 D+ A ++ + T + Q N Sbjct: 76 YSHYLNDDHIAELHSAVHEATSHTTEICVNQET------KKGWLRINLEAMRKQGGGNHY 129 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSI------------------LEATSDGIAIINRE 471 + + + +++++ +L + E D + ++N E Sbjct: 130 LILNQADISQMKQVRQELKTSNQKLQQLVSNQNQRINEQEVQMGVMFEQAVDNMLLLNAE 189 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 +L N + LF + D+L T L + T + + L+ + E I + Sbjct: 190 LKVLDVNDSALSLFEHSKSDLLGLELTSLLYEFTENNIEDKLSSVEMYQEVPLDEVIKVS 249 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 T + L + + LT+ DIS+ + +N+L ++ E+ + Sbjct: 250 RTSDVLSLLGSVRYITMKTQKYIVLTLRDISKEQMAQNELRRSQSELEEVVRSLN 304 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 6/137 (4%) Query: 456 SILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 S+L+ SDG+ I + + I N A K +G P ++ + F Sbjct: 28 SVLDLLSDGMVIFDGQVGSNAIFYANPAFLKYYGLPSNQVIGRNIIEFYSHYLNDDHIAE 87 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNK 570 L + T E TK+ L + + + + L ++ DIS+ KQ + + Sbjct: 88 LHSAVHEATSHTTEICVNQETKKG-WLRINLEAMRKQGGGNHYLILNQADISQMKQVRQE 146 Query: 571 LSHAKKIAEKESSHKSD 587 L + + ++ S+++ Sbjct: 147 LKTSNQKLQQLVSNQNQ 163 >gi|161519742|ref|YP_001583169.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia multivorans ATCC 17616] gi|189354079|ref|YP_001949706.1| chemotaxis protein methyltransferase [Burkholderia multivorans ATCC 17616] gi|160343792|gb|ABX16877.1| signal transduction histidine kinase with CheB and CheR activity [Burkholderia multivorans ATCC 17616] gi|189338101|dbj|BAG47170.1| chemotaxis protein methyltransferase [Burkholderia multivorans ATCC 17616] Length = 1380 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 124/732 (16%), Positives = 264/732 (36%), Gaps = 63/732 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + +S+ + + + ++ + V L +D I L+ + + Sbjct: 562 IDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRV 621 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 W + I++ P + + + L D+ + Sbjct: 622 KWTHD--TQVSWINMTVRPFHDK------------------VANADFLLVVFDEVAGRMT 661 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ + P ++++++ E A + +T L S E Sbjct: 662 DEDQAEATGQD-----------PVLAQLEHELQHSREQLATIIEQYETSVEELKASNEEL 710 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E+ + + + K+ ++ + + R + A D + + Sbjct: 711 QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 768 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 FV + P+ + D ++ L P L+D+ L Sbjct: 769 --ATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLRL 826 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 +R I+ + +P+ A+ + D + Sbjct: 827 IERE----------IESEAGRWYLIRLLPYRTAD--DHIDGAVITLIDVTDRHHAEEAAR 874 Query: 449 IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +L + ++T D I I + GII S N ++FGY ++++ + + E N Sbjct: 875 AGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDRH 934 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWK 565 ++ + + TK+ + + + + ++ + D+++ K Sbjct: 935 ARVPAHEREVAAREGRA-DDERWHRTKDGRRIFCSGVVTPIADTSFNGFAKIVRDLTQRK 993 Query: 566 QEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 ++ A ++ A + K +F+A +SHE+R PL I +E + + Sbjct: 994 LSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAE-MLPRLPETR 1052 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P E A I ++ I++DLLD+S+I +GK+ L V L + + + Sbjct: 1053 DIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEAD 1112 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A+ + +++ + LAD +QI N++SNA+ FT +GG+I++ TH + + Sbjct: 1113 AHARGLVLTAELPDEPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEAR-MLR 1171 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797 + V D G G+ L F Q P + G G+GL L + +V+ + G+ S Sbjct: 1172 VDVIDDGQGIDRDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHDGRISAASEG 1229 Query: 798 PAKGTLIEIIFP 809 P +GT + + P Sbjct: 1230 PGRGTTMTVWLP 1241 >gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445] gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445] Length = 783 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 696 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 104/518 (20%), Positives = 185/518 (35%), Gaps = 38/518 (7%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + DE ++ T++ V G++ N +L + + K D +E L Sbjct: 41 TKQLDESLSILRATIESTADGILVTDEYGHMLRYNERYLQMWQIKLPDIVE-------LH 93 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ------- 423 +L + +D W E + + Sbjct: 94 QHRQLQKLSCKY-----LADPKQYLERIEEIYDAWPPETYDLLELTDGRIFERYSKIQYA 148 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + + + ++ +L + EA I +G + N+ Sbjct: 149 EDLCVGRVWSFRDITARKHAEEALQESTERLHFMAEAMPQKIFTARADGAVDYFNQQWKD 208 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 G E + + + + L+ L+ + Sbjct: 209 YTGLAREKMQGWEWIKLIHPDDAPECVRRWQHSLNTGEH--LQMECRFRQANGTYRWHLL 266 Query: 544 IIKKLPFSSCY----SLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARV 592 + + Y + DI K+ + A+ AE+ + K DFLA + Sbjct: 267 QAQARRDTKGYISMWVGSNTDIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATL 326 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL AI+G+S++I G + N I+R+ ++ DLL++S I S Sbjct: 327 SHELRTPLNAILGWSQLILQ---GTMKNEDIQRGLETIERNARAQNKLIEDLLEMSSIIS 383 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 K+ L + L A+ V A K I IR + R+L D ++QI N+L Sbjct: 384 NKIRLDMQEWDLGAIAEAAVESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIWNLL 443 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNA+ FTP GG + + ++ ++ + V+D+GVG+ L F Q +S Sbjct: 444 SNAVKFTPDGGTVEVIVERAAS-QLRVIVKDSGVGIKPEFLAYVFDRFRQADSSLTRNHG 502 Query: 773 GTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + K +V + G S +G + P Sbjct: 503 GLGLGLAIVKQLVGLHGGTVCAESKGEGQGASFCVTLP 540 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 32/287 (11%), Positives = 71/287 (24%), Gaps = 9/287 (3%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 +F D + +S F + + A G + +++ G K Sbjct: 158 SFRDITARKHAEEALQESTERLHFMAEAMPQK-IFTARADGAVDYFNQQWKDYTGLAREK 216 Query: 113 MIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 M G + + L + GT Y L A Sbjct: 217 MQGWEWIKLIHPDDAPECVRRWQHSLNTGEHLQMECRFRQANGT--YRWHLLQAQARRDT 274 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 S + G ++ + + L+ + E ++ + + + + P Sbjct: 275 KGYISMWVGSNT-DIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATLSHELRTP 333 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHTINLNQYTK--KQ 287 + + L ++D E ++ L E E I+ + Sbjct: 334 LNAILGWSQLILQGTMKNEDIQRGLETIERNARAQNKLIEDLLEMSSIISNKIRLDMQEW 393 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 G + + ES + + D + + Sbjct: 394 DLGAIAEAAVESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIW 440 >gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 778 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G + + N ++ GY ++I+ K F+VF + Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I +S DIS+ + + L Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + ++AD + + Q+ LN+LSNAI + GQ+ I + V + V DTG G+ Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TPA+G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623 Query: 811 YDTSHP 816 P Sbjct: 624 VLVHAP 629 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E + P Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13] gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp. 83/13] Length = 783 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19] gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038] gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Bacterial sensor protein, C-terminal:Hist [Brucella melitensis biovar Abortus 2308] gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19] gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038] Length = 783 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1] gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1] Length = 1358 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 106/525 (20%), Positives = 200/525 (38%), Gaps = 38/525 (7%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 +A +E E + P+ + + G + + + T + L Sbjct: 449 AAQIEENEKQFEYIANFMPVMVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEG---WRLP 505 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 P + R M + + Sbjct: 506 FHPDDMATTGPR-WFHSLKTGDEYNTEYRCQRY---DGEWRWMLGRALPFYDDSGRIVKW 561 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 G + D + +++ QL +++ + +I+R + ++ E Sbjct: 562 FGTCTDIHDLVMARQEARQTREQLQQVIQYAKIVLWVIDRNDEVKVLEGDIAPHGRMRKE 621 Query: 491 DILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRII- 544 +++ + E N + EIL + ++ +L+ L Sbjct: 622 ELIGRNIFDVFELTGNDRKRWQGPIQEILQGKQSDEIVNGRYMSEARYYRTRLVPLMSAC 681 Query: 545 ----IKKLPFSSCYSLTMHDISEWKQE----------KNKLSHAKKIAEKESSHKSDFLA 590 I+ F DI+E ++ ++L + A++ S KS FLA Sbjct: 682 RTAGIEGNTFVDGVIGVSMDITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFLA 741 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ +IG SE++ + N + A I RS N +L ++ND+LD SK+ Sbjct: 742 NMSHEIRTPIAGVIGMSELLFDMNL----NDEQKDCAENIHRSANSLLTVINDILDFSKV 797 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQI 707 ESG++++ SL + + ++ A K + ++S + + R++ D ++QI Sbjct: 798 ESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQADLRVMGDPGRLRQI 857 Query: 708 ALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 N+L+N+I FT G ++IS V V DTG+G+ ++ +PF Q Sbjct: 858 LTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGIEEEVRKRLFQPFSQAD 917 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +S R GTGLGL ++K +V+ G+ ++ S +GT P Sbjct: 918 SSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 962 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 27/285 (9%), Positives = 71/285 (24%), Gaps = 18/285 (6%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKS-------VDDI 360 S ++ F + L ++ +P + + N N + L L + D + Sbjct: 308 ASSASVFQKATQLKDAILNSITMPAYAMWKDENFGIPNKALLRLLSSDASYIPGDQRDFL 367 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + D I V R R + Sbjct: 368 SQFSCWTEDFQRLLTIDEFPIIEVCRTRDRVEKRRIGMRH---PQTGTRLVYEINGEPVF 424 Query: 421 ANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + + I + + T+ ++E Q I + +G+ ++ Sbjct: 425 HDETGDFLGGIVIFKDITEYTKQIAAQIEENEKQFEYIANFMPVMVWTTTPDGMHDWFSQ 484 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 G + L + + + + + L + + Sbjct: 485 RWYDYTGLTPDKSLGEGWRLPFHPDDMATTGPRWFHSLKTGDE--YNTEYRCQRYDGEWR 542 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + S + T DI + + + ++ ++ Sbjct: 543 WMLGRALPFYDDSGRIVKWFGTCTDIHDLVMARQEARQTREQLQQ 587 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 8/177 (4%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 ++E F + V W G S+ G K +G + Sbjct: 454 ENEKQFEYIANFMPV-MVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEGWRLPFHPDDMA 512 Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 LK + + + +G + + ALP Y + + FG Sbjct: 513 TTGPRWFHSLKTGDEYNTEYRCQRYDGE--WRWMLGRALPFYDDSGRIV--KWFGTCTDI 568 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSS 242 R ++ ++ + + K V ++ + P K ++ Sbjct: 569 HDLVMARQEARQTREQLQQVIQYAKIVLWVIDRNDEVKVLEGDIAPHGRMRKEELIG 625 Score = 38.5 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 15/104 (14%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV------- 508 + L+ + +++ ++ N A+++LFG E I + L+ T Sbjct: 46 TALQYLPVPVLVLSSHKTVVLANEAMARLFGIGFESINDLSISDVLQDKTMGELGVDILQ 105 Query: 509 --------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 +L ++ + +L++ Sbjct: 106 NGSPILITWEDFLECVIKDSITSSLDEDGDSRMGSGHTTPTAAT 149 >gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 963 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 125/695 (17%), Positives = 249/695 (35%), Gaps = 56/695 (8%) Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W L G ++A L I + R + Sbjct: 68 WNVDDELISKIGRAFVANAEIAELTIRDDQQRVIYQH-----RHRDGRLILREFSVEHEG 122 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 K+ EI + E++ + + L + + + ++ A + Sbjct: 123 KYIGSVEISLSLRAFEEKNHWLLLTSLGTAALLIISLLGAMRWMLA-------RLLKKPV 175 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + ++ + + + F + + K + ++ R A E Sbjct: 176 DNLVGAIAQVVEGRYPLIALAQTYTEFAPIISGFKTMSDAVASR-----EASLRASEQKM 230 Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ++ ++ G+ +AN L + + D I G + Sbjct: 231 LSILEGVDAYIYLKDTEGHYLFANRPLRELWQVEMNDLI---GFGDEKFFNAESVVTLRQ 287 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + R T + ++ + GI + + + Sbjct: 288 TDSRVLRGGETLHSEEVNTIAAT---GKTVYYQSTKLPLYREDGSIYALCGISVDITERK 344 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500 + + + +L A GI + +L+ + ++ L+G D Sbjct: 345 RIEEALRVNEERLKLATRAGGIGIWDWDVAANVLTWDDSMYLLYGLCAGDFGGAYDAWLS 404 Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557 L + ++ + + L + + E + E + + + + S T Sbjct: 405 TLHPDDRALSDAEIQAALRGEREFSPEFRVIRPDGEIRKIKAFAKVYRDESGSPTRMVGT 464 Query: 558 MHDISEWKQEKNKLSHAKKIAEK------------------ESSHKSDFLARVSHEIRTP 599 DI++ K+ + +L K E+ + KS FLA +SHE+RTP Sbjct: 465 NFDITDLKRIEEELRKYKDHLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTP 524 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L A++GFS +++ PL + N I+RSG +L ++ND+L+++KIE+G + L Sbjct: 525 LNAVLGFSSLLRKD---PLLSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDS 581 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 P+ L V + ++Q+ A EK + + ++ PR I D ++QI +N++ NA+ F Sbjct: 582 APLDLGMLVRDVTDMMQVRAQEKGLQLLIDQSSEFPRYIRGDEARLRQILINLVGNAVKF 641 Query: 719 TPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 T GG + + N +++ V DTG G+ + EK +PF Q+ + +GTG Sbjct: 642 TQQGG-VTVRFGLKPNTTPAHLLIEVEDTGSGIAAEDQEKIFEPFVQV--GEVAMQKGTG 698 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL + + V G + S P G+L + P+ Sbjct: 699 LGLTITRQFVQLMGGSVTLNSKPGSGSLFRVELPI 733 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 38/395 (9%), Positives = 95/395 (24%), Gaps = 24/395 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143 + + D G+ + L + +IG + + +L+ T Sbjct: 240 YIYLKDTEGHYLFANRPLRELWQVEMNDLIGFGDEKFFNAESVVTLRQTDSRVLRGGETL 299 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + I T V LP+Y + + GI + +++ Sbjct: 300 HSEEVN-TIAATGKTVYYQSTKLPLYREDGSI--YALCGISVDITERKRIEEALRVNEER 356 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKT-E 257 ++ + H DD + Sbjct: 357 LKLATRAGGIGIWDWDVAANVLTWDDSMYLLYGLCAGDFGGAYDAWLSTLHPDDRALSDA 416 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + E + + K + ++ S + + +E Sbjct: 417 EIQAALRGEREFSPEFRVIRPDGEIRKIKAFAKVYRDESGSPTRMVGTNFDITDLKRIEE 476 Query: 318 GENLTPETVD---KCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLD 371 + ++ + V + AN + FL ++ + G S+LL Sbjct: 477 ELRKYKDHLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLR 536 Query: 372 APKLSDNNAIKPVMLYRSDRT--------CIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L + + + + L + + + + Sbjct: 537 KDPLLSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDM 596 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + G++ + R + + +L IL Sbjct: 597 MQVRAQEKGLQLLIDQSSEFPRYIRGDEARLRQIL 631 >gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha proteobacterium BAL199] Length = 514 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 118/489 (24%), Positives = 213/489 (43%), Gaps = 13/489 (2%) Query: 326 VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 + V + + N S + Y + + + L L+ + + Sbjct: 10 LHSLDEGVVGVNDASTIVFVNASAERMFGYSAAEMLGQ--SLDVLIPENHRDRHESDVEK 67 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + T + N + + + + + + + Sbjct: 68 FRQSAQSSRMMQERGGVTGRRKDGNQFDAEVSISKISFDGGQIL--LALVRDVTERARAD 125 Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++ + ILE +D + + + G IL N LFG ++ Sbjct: 126 ARLRALEARHRVILETCADAVLLADAVTGAILDANDQAGALFGCDGSALIGIHKDELCAW 185 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDI 561 + + + + T ++ +L+ + I + ++ + DI Sbjct: 186 DQDNRDGWCVERTQAAGRVHTPNATI--RRRDGQLVPVEITSGMTQIDGAPTLVGFFRDI 243 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + K + +L A+ A++ S K+ FLA VSHE+RTPL AIIG SE+I+++ +G +GNP Sbjct: 244 TPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGGIGNP 303 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y EYA I+ SG +LD++N +LD S+IE K+ LH + V + + ++ VQ +E Sbjct: 304 KYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQRLLDE 363 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + A ++AD RSV+Q+ LN+LSNAI TP GG+I ++ + E++L V Sbjct: 364 GGLTCELQ-AKGPLVLVADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGELVLTV 422 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 RD+G G+ L +PF + R GTGLGL + K ++ + G I S + Sbjct: 423 RDSGEGIPRERLALVTEPFN-LDEDISVSRQGGTGLGLAITKGLIKRHGGAMSINSRVGE 481 Query: 801 GTLIEIIFP 809 GT + ++FP Sbjct: 482 GTTVRLVFP 490 Score = 38.1 bits (87), Expect = 6.2, Method: Composition-based stats. Identities = 19/248 (7%), Positives = 54/248 (21%), Gaps = 24/248 (9%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------RQNTWYGKT 147 + ++ + G A +M+G L + H D + + + R G Sbjct: 25 TIVFVNASAERMFGYSAAEMLGQSLDVLIPENHRDRHESDVEKFRQSAQSSRMMQERGGV 84 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRV----------DNDPRAL 196 T +G + ++ + F G + +V + Sbjct: 85 TGRRKDGNQFDAEVSISKI-------SFDGGQILLALVRDVTERARADARLRALEARHRV 137 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 L + G ++ + + + ++ Sbjct: 138 ILETCADAVLLADAVTGAILDANDQAGALFGCDGSALIGIHKDELCAWDQDNRDGWCVER 197 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + ++ + D + + + + H+ Sbjct: 198 TQAAGRVHTPNATIRRRDGQLVPVEITSGMTQIDGAPTLVGFFRDITPHKAREEELVEAQ 257 Query: 317 EGENLTPE 324 E Sbjct: 258 LAAKEGSE 265 >gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 489 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 24/369 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R++ E ++ +IL + +DG+ +++ G ++ N A K+FG ++ K + + Sbjct: 128 REIADERNKMKAILASITDGLVAVDQVGRVIMLNPAAEKMFGKKGAEVEHKYLLKVVRNH 187 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 ++ + EIL+ L LE +L + LT+ DI+ Sbjct: 188 ---EIDAMVKEILASGLP--LENEVRLFPTTSQLFRIYGTPITSEQGRIIGAVLTIRDIT 242 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +++F+A VSHE+RTPLT+I GF E + Sbjct: 243 DIRRLE--------------QMRTEFVANVSHELRTPLTSIRGFVETLLEGAL--EDPEV 286 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + I+ + ++ DLL +S++ES L + ++ V A EK Sbjct: 287 SRRFLGIINHEAQRLQQLIEDLLSLSRLESQPKRQDAGRADLAATLDRVLTTVNQLAREK 346 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + IP + + Q+ LN++ N I +TP+GG++ I E V + V Sbjct: 347 GVALEKEIPAEIPELAISESYLNQVLLNLIDNGIKYTPAGGRVTIRAA-RLGELVQVEVA 405 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ L + + F ++ ++ GTGLGL + K +V+++ G + S P +G+ Sbjct: 406 DTGIGIPPESLPRVFERFYRVDKARSREMGGTGLGLAIVKHIVESHGGSISVTSRPGQGS 465 Query: 803 LIEIIFPLY 811 P+ Sbjct: 466 HFFFTLPIA 474 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 79/300 (26%), Gaps = 20/300 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + ++ K G ++ L V ID + ++L + Sbjct: 151 VDQVGRVIMLNPAAEKMFGKKGAEVEHKYLLKVVRNHEIDA--MVKEILASGLPLENEVR 208 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L+P + PI S G + +RL++ + Sbjct: 209 LFPTTSQLFRIY----GTPITSEQGRIIGA--VLTIRDITDI-------RRLEQMRTEFV 255 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEES 267 F + L H+ L+ LL+ S Sbjct: 256 ANVSHELRTPLTSIRGFVETLLEGALEDPEVSRRFLGIINHEAQRLQQLIEDLLSLSRLE 315 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 S P+++D +L T + T+ ++E L + L ++ Sbjct: 316 SQPKRQDAGRADLA-ATLDRVLTTVNQLAREKGVALEKEIPAEIPELAISESYLNQVLLN 374 Query: 328 KCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPV 384 + + G + L + + D L + + D + + Sbjct: 375 LIDNGIKYTPAGGRVTIRAARLGELVQVEVADTGIGIPPESLPRVFERFYRVDKARSREM 434 >gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 974 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 93/408 (22%), Positives = 168/408 (41%), Gaps = 24/408 (5%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 Q + + E ++ + + ++ QL LEA G+ +++ EG N+ Sbjct: 139 AQQAQADLLENLRQEVIERQRIQEELRASERQLAQFLEAVPVGLFVVDAEGQSYYANQRA 198 Query: 482 SKLFG---YPVEDILRKPFTVFLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 +L G P + + + + + L + Sbjct: 199 QQLVGKGMIPGATVEELSQVYQIYVAGTHQLYPTEKNPIVQALRGERVTVDNMEI---HH 255 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH------ 584 E+++ L + + DIS KQ + + + E++++ Sbjct: 256 GEQVIPLEVWATPIYNEQGEIVYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQ 315 Query: 585 -KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K +FLA SHE+RTPL IIG +E + + G L P I + SG + ++ND Sbjct: 316 LKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLS-PVQIANLAMVVSSGKRLNSLIND 374 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD +K+++ + LH + V + ++L + K + + + P I D Sbjct: 375 ILDFAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNEIPADFPGIDGDENR 434 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 ++QI N++ NAI FT SG I +S T N + V DTG+G++ + E K F Q+ Sbjct: 435 LQQIMYNLVGNAIKFTESGS-ITVSATQQQN-MAEVTVADTGIGISPDKFEDIFKSFEQL 492 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 S GTGLGL + K +++ + G+ + S +G+ PL Sbjct: 493 NASVSYPSRGTGLGLSITKQLIELHGGRIRVESEVGQGSRFIFTLPLS 540 Score = 41.6 bits (96), Expect = 0.64, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 17/194 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----------DILHIDPNNHIGD 135 + +DA G ++ + +G + G + ++S L+ N I Sbjct: 182 LFVVDAEGQSYYANQRAQQLVGKGM--IPGATVEELSQVYQIYVAGTHQLYPTEKNPIVQ 239 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 L+ + I +P+++ A PIY+ E + A Sbjct: 240 ALRGERVTVD---NMEIHHGEQVIPLEVWATPIYNEQGEIVYA--IAAFQDISLHKQAEA 294 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + + + + ++ E S + P + SL + A ++ Sbjct: 295 ERLQFTQALEQQNAALQRLDQLKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLSPVQ 354 Query: 256 TEKYPLLTSEESSL 269 ++ S L Sbjct: 355 IANLAMVVSSGKRL 368 >gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645] Length = 954 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 98/424 (23%), Positives = 185/424 (43%), Gaps = 16/424 (3%) Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + + LA+ + + P+ + + + + +L I++++ Sbjct: 126 PVFLDDKPVLALELFGDSERLEDPQIDVKMADAMRGLSVLAACWRRDESYQRLAQIVDSS 185 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 D I + + I N ++GY E+ L KP ++ L Sbjct: 186 YDAIISRDVDDKITCWNAGADAVYGYQAEEALGKPISILFPPTRREEEPEITDARLHGKR 245 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577 E ++ +++S+ I + L ++ S DISE K + +L AK Sbjct: 246 LTQFETER--RRRDGRIISVSITVSPLRDANERIIGVSTIERDISERKFAERELQKAKAA 303 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + +S+FLA VSHEIRTP+ AIIG +++ + EY + S + + Sbjct: 304 AERANRARSEFLANVSHEIRTPMNAIIGMTKLTLAEDL----PEAVREYVETANSSAHTL 359 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD SKIE+GK + +L + + + + A K + + + IP Sbjct: 360 LSLLNDILDFSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEE 419 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYEL 753 ++ D ++QI N++SNA+ FT G + + + + DTGVG+T + Sbjct: 420 LIGDAIRLRQIITNLVSNAVKFTERGEVLLSVKLLRRFPREVRIRFTISDTGVGITPADQ 479 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLY 811 ++ +PF Q+ +S G+GLGL + +++ G+ + S P G+ +FP Sbjct: 480 KRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLELNSEPGVGSRFSFALLFPRT 539 Query: 812 DTSH 815 T+ Sbjct: 540 RTAE 543 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 21/252 (8%), Positives = 65/252 (25%), Gaps = 10/252 (3%) Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + + + + + S V + L + Sbjct: 55 ANPQTLAAQLWHPEELIDCDDVAQRLRRRYSEAAPAEAGAAVRRAFLEQRPMIEPLDSTM 114 Query: 259 YPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + ++P +D + L + + Q + K + + DE Sbjct: 115 SADQSLSILAIPVFLDDKPVLALELFGDSERLEDPQIDVKMADAMRGLSVLAACWRR-DE 173 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + VD + N + Y++ + + + L + Sbjct: 174 SYQRLAQIVDSSYDAIISRDVDDKITCWNAGADAVYGYQAEEALGKPISI--LFPPTRRE 231 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + I L+ T + ++++ + + + IE + Sbjct: 232 EEPEITDARLHGKRLTQFETE-----RRRRDGRIISVSITVSPLRDANERIIGVSTIERD 286 Query: 437 DVDTRINKRKME 448 + + +R+++ Sbjct: 287 ISERKFAERELQ 298 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 56/246 (22%), Gaps = 10/246 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTT 148 D + + G A + +G + + + I D L + +T Sbjct: 193 DVDDKITCWNAGADAVYGYQAEEALGKPISILFPPTRREEEPEITDARLHGKRLTQFETE 252 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G + V I ++ P+ N G I ++ + Sbjct: 253 RRRRDGRIISVSITVS--PLRDANERIIGVS--TIERDISERKFAERELQKAKAAAERAN 308 Query: 209 EIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + I + V E L + +L Sbjct: 309 RARSEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANSSAHTLLSLLNDILD 368 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + T L + ++ P + Sbjct: 369 FSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLR 428 Query: 324 ETVDKC 329 + + Sbjct: 429 QIITNL 434 >gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS domain-containing [Geobacter sulfurreducens KN400] Length = 772 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 100/496 (20%), Positives = 184/496 (37%), Gaps = 31/496 (6%) Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + F+ G+ NP+ Y + + + G+ ++ Sbjct: 41 YRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV------LSRGVDSG 94 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L R R + + ++ ++ GI + + Sbjct: 95 WAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGK-------ILGIARDVSER 147 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + + L +IL+ I I + +G + N A + G P + + Sbjct: 148 KRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGIPRNAAVGRRLNEL 207 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSL 556 + ++ + ++ LR + S+ Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDAAGGVVDVGGISI 267 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ + + +L A A S K DFLA +SHEIRTP+ +IG E+++ Sbjct: 268 ---DITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDL- 323 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +PR EYA S +L ++N +LD SKIES ++ L P ++ EAV A+ + Sbjct: 324 ---DPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFR 380 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K +++ ++P ++ D QI N++ NA+ FT G I + + + Sbjct: 381 AVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGA-ITVQLGAAAVD 439 Query: 736 EVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG G++ + + PF Q S GTGLGL + + +V+A G Sbjct: 440 DCRIDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGV 499 Query: 792 FYIFSTPAKGTLIEII 807 + S P G+ Sbjct: 500 ISVASEPGMGSTFSFR 515 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 39/396 (9%), Positives = 95/396 (23%), Gaps = 25/396 (6%) Query: 45 CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104 C S + +T + T L + + + + +DA G+ +++ + Sbjct: 12 CAASVLGAPYTLLCRLLPRITADLRYGSGYR-ALFEHAIDGIFIMDAEGHYLDVNPAICS 70 Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 IG + + + +S + + + T+W G L V + Sbjct: 71 AIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAH 130 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 LP + + G I + + + + + + Sbjct: 131 LLP----DGKILG-----IARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTL 181 Query: 225 -FSQQSPPPHLRMKNK--VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + + + V + + E ++ Q++F Sbjct: 182 RLANNAWERETGIPRNAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQDEFLDFGAG 241 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 L++ + + + + + Sbjct: 242 VRVFHTIKFPLRDAAGGVVDVGGISIDITDRSKMEGELRAAHA------AAVDSSRAKID 295 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 F AN S + T + G LL L + S + +A + Sbjct: 296 FLANMSHEIRTP------MNGVIGTLELLRETDLDPRQREYAEIARESAESMLAVINMVL 349 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L + +PF + Sbjct: 350 DYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAAR 385 >gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 631 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%) Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + N +F T + LL + I + Sbjct: 13 IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 66 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + PE + + + + +R++ + ++ + Sbjct: 67 KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 118 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + +++ +G++ N A + FG + ++ L + SL Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569 ++ L + + + + + + + + D++E ++ + Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + Y + + Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 293 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I S +++D+LD+S + GK+ L E + L E V EA++ +L A K ++ Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 353 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +L D ++Q+ N+LSNAI FTP+ G+I + + +++ V D+G G+ Sbjct: 354 APPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 412 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808 L F Q + + G GLGL + + +V+ + G+ S KG + Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472 Query: 809 P 809 P Sbjct: 473 P 473 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 92 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q +G + I++ A P YS + Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + +++ + +++ + + D ++ L + + Sbjct: 268 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327 Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L + + E + L + L + + + + P+ Sbjct: 328 LVEQVREALNTQELAAEGKDQVLELHAPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 386 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G++ + + + Sbjct: 387 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P +Q + + + Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 506 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473 + Q L +LE + +D +A+I+ G Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 549 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352 ++ + ++ + E E D P+P +V G + + N ++ Sbjct: 84 EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 ++I+ G + D+ L S + A L + + Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 + +I +TN A + G + L ++ + Y + + + Sbjct: 10 DYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEWFDRYGHVARTGNR---IHFEMQ 65 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + + S+ P + ++ DI+E K+ + +L+ ++ Sbjct: 66 AKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSA 114 >gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424] Length = 1058 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 178/397 (44%), Gaps = 38/397 (9%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +++ +L LEA GI++ + G + NR ++ G +K Sbjct: 436 AELQNTQHRLNQFLEAIPVGISVHDTTGKLYYANRKSQEILGITSPLDAQKEQLSQAYHT 495 Query: 505 TPSVMNHY-------LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-- 555 + N + L + + ++ K++ + + + Sbjct: 496 YQAGTNQLYPIETMPVIRALRGETAYVEDMEL---HQDNKIIPIEVWATPIYDDQGQIVY 552 Query: 556 --LTMHDISEWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHE 595 DI++ K + +L+ AK+ AE + KS F+A +SHE Sbjct: 553 AIAAFQDITQRKHTEQLLADYNHTLEKQVIQRTAELAEAKEKAEVANQAKSRFIANMSHE 612 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPL AI+GFS+++ P P + E I+RSG +L ++N++L ++KIE+GK Sbjct: 613 LRTPLNAILGFSQLMNRSTTLP---PEHQENIQIINRSGEYLLTLINNILTLAKIEAGKT 669 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714 +L+ L ++E + L A +K + + IP+ I D ++++ +N+LSN Sbjct: 670 SLNLSNFDLYSLLNEIEEIFYLAAKKKNLNLTFERDKTIPQYIRTDEVKLREVLINLLSN 729 Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 AI FTP G + + T ++ V+DTGVG+T EL+ F Q + + + EG Sbjct: 730 AIKFTPRGDILVDVQTLSQKPITLLFTVKDTGVGITPEELDILFDAFSQTQSGKNSQ-EG 788 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 TGLGL +++ V+ G+ + S A GT+ P+ Sbjct: 789 TGLGLAISRQFVELMGGELTVDSQIAVGTIFRFTLPV 825 >gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1] gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1] Length = 783 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 713 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 170/391 (43%), Gaps = 19/391 (4%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 ++ E ++ + + + + EA + N G N+ + G +E Sbjct: 178 LQQEILERQRILEVLRQSEERYRYLAEAIPQLVWTTNANGECDFFNQNWCEYTGLTLEQS 237 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFS 551 L + L + + + + T + L Sbjct: 238 LGSGWLAALHPDDIQNADQIWSNAVKN--STTYNNEYRFKRASDGSYRWQLARGLPLKDE 295 Query: 552 SCYSL----TMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPL 600 + T DI E KQ + +H A+ AE + K +FLA +SHE+RTPL Sbjct: 296 QGIVVKWFGTCTDIHEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPL 355 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AI+G+S++++++R L + + I+++ NL + ++ DLLDIS+I GK+ L Sbjct: 356 NAILGWSKLLQSRR---LDQEKTSQALATIEKNANLQVQLIEDLLDISRILQGKLTLDIT 412 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 ++L + A+ ++L A K I + T F N+ +++ D ++Q+ N+LSNA+ FTP Sbjct: 413 KINLKSTILSALETMRLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNALKFTP 472 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG+I + ++ + V DTG G++ L F Q ++ G GLGL + Sbjct: 473 KGGKIEVRLE-QADGYAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGLGLAI 531 Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 + +V+ + G S KG + + PL Sbjct: 532 VRNIVEIHGGIVKAKSEGEDKGAIFTVSLPL 562 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 44/169 (26%), Gaps = 5/169 (2%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 SE + + + W +A+G ++ + G + +G I Sbjct: 194 QSEERYRYLAEAIP-QLVWTTNANGECDFFNQNWCEYTGLTLEQSLGSGWLAALHPDDIQ 252 Query: 129 PNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + I +K T+ + + LP+ + FG Sbjct: 253 NADQIWSNAVKNSTTYNNEYRFKRASDGSYR-WQLARGLPLKDEQGIVV--KWFGTCTDI 309 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 L + + + ++ E I S + P + Sbjct: 310 HEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPLNAI 358 >gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 352 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 170/360 (47%), Gaps = 23/360 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E ++ +IL DG+ ++R+GI+ N+A ++F E ++ +PF + + Sbjct: 13 RERNKMKAILTTLVDGVMAVSRDGIVTLANKAAEEIFKARHEGLVGRPFASLV---SSQE 69 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568 +N L ++ + E + + I + + HD+++ ++ Sbjct: 70 LNQMLEDVFETGRQIFTETALEQCLFR---VQMAAINGEKGDVEGAVVVFHDVTDARKF- 125 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +S+F+A VSHE+RTPLTAI GF E + + + Sbjct: 126 -------------DQMRSEFVANVSHELRTPLTAIKGFVETLLDGAL--EDKLICRRFLT 170 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ N + +++DLL +S IES + L +PV L ++ + ++++ A EKR+ + Sbjct: 171 IIEGENNRLTRLIDDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLEL 230 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F ++P + AD V Q+ +N++ NAI +T GG+I+I ++V + DTG G+ Sbjct: 231 IFNRDLPPVKADEDLVGQVLINLIDNAIKYTSPGGKIVIRVK-RGGDQVFTSITDTGTGI 289 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + + F ++ ++ GTGLGL + K +V+++ G+ ++ S KG+ Sbjct: 290 PQESLPRLFERFYRVDKARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGSTFGFSL 349 >gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 715 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 99/437 (22%), Positives = 177/437 (40%), Gaps = 27/437 (6%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + A L Q + E + + AN+ ++ + + + + Sbjct: 140 GERLKVEAELRKYQNHLEELVTIRTNEITNANEK--------LQQQINERQHIVEILRES 191 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 + + EA + + G N+ G +E+ L + L Sbjct: 192 EERYRYLAEAIPQLVWTADANGECDYFNQNWCDYTGLNLEESLGSGWLAALHLEDLERSY 251 Query: 511 HYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 ++ + E + L L + T DI E K Sbjct: 252 ETWSKAVETGA--LYENEYRFKRAADGSYRWLLGRGLPLKDHQGRVVKWFGTCTDIHEQK 309 Query: 566 QEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q + A+ AE + K +FLA +SHE+RTPL AI+G+S++++ ++ P Sbjct: 310 QILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLDPT 369 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R + I+R+ L + ++ DLLDIS+I GK+ ++ V+L + A+ ++L Sbjct: 370 ---RTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVTVILAALETMRLA 426 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K I + T+F NI +++ D ++Q+ N+LSNA+ FTP+GG+I ++ Sbjct: 427 AESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTLDKME-GYAQ 485 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797 + V DTG G+ L F Q +S R G GLGL + + +V+ + G S Sbjct: 486 IVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLG 545 Query: 798 PAKGTLIEIIFPLYDTS 814 +G + P+ Sbjct: 546 EEQGASFTVRLPILPEE 562 Score = 70.8 bits (172), Expect = 8e-10, Method: Composition-based stats. Identities = 17/169 (10%), Positives = 46/169 (27%), Gaps = 5/169 (2%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128 +SE + + + W DA+G ++ G + +G + ++ Sbjct: 190 ESEERYRYLAEAIP-QLVWTADANGECDYFNQNWCDYTGLNLEESLGSGWLAALHLEDLE 248 Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 + ++ + + + + LP+ + FG Sbjct: 249 RSYETWSKAVETGALYENEYRFKRAADGSYR-WLLGRGLPLKDHQGRVV--KWFGTCTDI 305 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 RL + + + ++ E + S + P + Sbjct: 306 HEQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAI 354 >gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens DSM 7] gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens TA208] gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens LL3] Length = 593 Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL +IL + +DG+ IN +G IL TN + + + N Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P +S + Q +E G + L + + D++E + Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++ESG LH+E V+L E + + A EK + Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVS 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + A + P + D ++Q+ N++ NA+ T SGG + I+ + + + ++D+G Sbjct: 464 LTEDIAVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDG-LKIDIKDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +V+A+ G + S+ KGT Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFT 582 Query: 806 IIFP 809 P Sbjct: 583 FYIP 586 >gi|320353326|ref|YP_004194665.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] gi|320121828|gb|ADW17374.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfobulbus propionicus DSM 2032] Length = 1165 Score = 339 bits (869), Expect = 2e-90, Method: Composition-based stats. Identities = 115/768 (14%), Positives = 230/768 (29%), Gaps = 73/768 (9%) Query: 87 WNIDAHGY--LKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQ 140 + + G S + ++ D + + D + +L Sbjct: 291 YRLYPDGRSCFPYASPGIWNIYEVTPEQVR----EDAAPVFDRLHPADHDRVAEAILASA 346 Query: 141 NT----WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 T + + P +G Y A P + G GI+ Sbjct: 347 RTLETFFCEFKVILPRQGLRWYWSQ---AQPQRLEDG---GTLWHGIISDITARKQAEET 400 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKD 251 + + + + V + + + R ++S Sbjct: 401 LRAREHYLHTILQTSVEGFWVLDTQGRVVEVNNAYLAMTGYSRREILRLSISDLDAIESP 460 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPS 310 D + ++ + + + + + + L + Sbjct: 461 DQIAVRIQRIIANGSELFESRH--RRKDGSLFPVEVSVTWLDEEGGRMVCFCRDLSERKR 518 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 L ++ V+ Y + +L + K D I Sbjct: 519 AEEALRHSHELMRHLIEHTNSGVAVHDRNLRYVYVSQRYLEMYGLKGRDVIGQ------- 571 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + K ++R T SA+ + Sbjct: 572 -HHYDIFPDLPEKWRDVHRQVLTGKTMSAKRDPYVRADGTMEWTRWECRPWYESPGTIGG 630 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + + ++++A+ I ++ EG +LS NRA ++FG+ Sbjct: 631 LIVYTEVITEQVLAEEALRKSEEFQRALIDASPLAIISLDPEGQVLSWNRAAERIFGWSE 690 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ++ L + F + + T IL+ + L K+ + + + + Sbjct: 691 KEALGQ-FLLIGNSEQAETLAALRTRILAGETLSRL--ELHLCHKDGSPIVVSLSTAPIR 747 Query: 550 FSSCYSL----TMHDISEWKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + DISE K+ + + L + ++ ++H+ L I Sbjct: 748 NPDGELIAIMSVLEDISERKRAEEEKKLLAVQLQQAQKMEAIGTLAGGIAHDFNNLLGVI 807 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IG+ E+ K R I +G D+V +L + + N+ P+ Sbjct: 808 IGYGEIAKEALPDHSTTARD---LEKILEAGERAADLVKQILAFGR----RANVEKIPLE 860 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-G 722 V EA+ L++ I IR + ILAD + QI +N+ +NA H G Sbjct: 861 PVHLVKEAVKLLRATLPS-TITIRQQLSARTGTILADPTQIHQIVMNLCTNAFHAMEQTG 919 Query: 723 GQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 G + I+ + V+L V DTG G+ +K +P+ Sbjct: 920 GVLDITLAECERDVQDLLYHPQVRPGKFVVLTVADTGPGIPPEIRDKIFEPYFTTKG--- 976 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+GTGLGL + +V G S P +GT + P ++ S P Sbjct: 977 -VGKGTGLGLAIVHGIVADTGGFITCESEPGQGTAFHVFLPAHEASVP 1023 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 62/520 (11%), Positives = 150/520 (28%), Gaps = 31/520 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G L ++++ ++G ++IG D + ++ + G Sbjct: 44 LDAAGRLADVNQAWLDSLGYTREEVIGRAFTDFLPPDQRQCFGGMMSRIEALDEILGAEL 103 Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ L+ ++ A R I + + + Sbjct: 104 AMAARDGSTLWGACNIRAE--RDAQGRLLKTRWVFI--DITARLLAENERRENEMHLKAI 159 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTE---YYAHKDDVLKTEKYPL 261 + + H+ + + + A + + + + Sbjct: 160 LNASTETIQLLDTEGRTIIANEASAKRLHVSVDDLIGRPVFDFFPPAVAEQRRECCRQVV 219 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 T + ++ ++ D Y G ++ + S ++ E L Sbjct: 220 ATGQPLTVQDERDGIAFEAYLYPVADEQGVVRRIALFSM---DITRRKAMERQLAESHAL 276 Query: 322 TPETVDKCPIPFFVYS---HGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 ++ P + Y G YA+P + + E A + L Sbjct: 277 LANLANQVPGVVYQYRLYPDGRSCFPYASPGIWNIYEVTPEQVREDAAPVFDRLHPADHD 336 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + L P + +GI + Sbjct: 337 RVAEAILASARTLETFFCEFKVIL---PRQGLRWYWSQAQPQRLEDG---GTLWHGIISD 390 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + L +IL+ + +G +++ +G ++ N A + GY +ILR Sbjct: 391 ITARKQAEETLRAREHYLHTILQTSVEGFWVLDTQGRVVEVNNAYLAMTGYSRREILRLS 450 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + +P + + I++ + K+ L + + + L + Sbjct: 451 ISDLDAIESPDQIAVRIQRIIANGSEL---FESRHRRKDGSLFPVEVSVTWLDEEGGRMV 507 Query: 557 TM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 D+SE K+ + L H+ ++ H + +A H+ Sbjct: 508 CFCRDLSERKRAEEALRHSHELMRHLIEHTNSGVAV--HD 545 >gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo] Length = 798 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 256 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 315 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 316 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 370 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 371 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 427 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 428 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 483 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 484 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 540 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 541 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 600 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 601 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 660 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 661 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 718 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 719 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 778 Query: 807 IFP 809 P Sbjct: 779 CIP 781 Score = 41.2 bits (95), Expect = 0.74, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 285 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 342 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 343 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 397 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 398 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 453 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 454 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 513 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 514 ERRLMATVHDLSIA 527 >gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645] Length = 1259 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 91/434 (20%), Positives = 177/434 (40%), Gaps = 28/434 (6%) Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 I + + + S + P + Q + + + ++ + Sbjct: 403 ELIDLLTDMQRQRNLGDFSDDVHVEPHTEVGQIAAEYNRVLAKVNCEMKQRSEAE----- 457 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVM 509 + I E +GI EG ++ N A++++ GYP LR Sbjct: 458 RRFREIFENAVEGIYQTTPEGFFVTANPALARMLGYPDLASLRDDIKNVATDVYVNRDRR 517 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565 + ++ EI + + + + + T+ DI+E + Sbjct: 518 DEFVDEIHQNGV--VFNFESEIRRGDGTFAWISENASARRNQNGDVLYYEGTVEDITEHR 575 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + +L+ K AE + KS FLA +SHEIRTPL +IGF +++ + + + Sbjct: 576 KA-LQLTDEIKAAEAANEAKSTFLASMSHEIRTPLNGVIGFLDLLHTTKL----DDQQGR 630 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + S + +L ++ND+LD+SKIE+G + L L + + + + Sbjct: 631 FVELAKSSASSLLHLINDILDLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLE 690 Query: 686 IRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EE 736 + +S A ++P+ + D ++Q+ +N+ +NA+ FT +GG + + + Sbjct: 691 LNSSVATDVPQAAIGDCERIRQVLVNLFANAVKFTETGG-VYLRVERERSVASSHDAIAR 749 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+ ++++ K F Q+ S GTGLGL + K +V+ G+ + S Sbjct: 750 IRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVES 809 Query: 797 TPAKGTLIEIIFPL 810 KG+ PL Sbjct: 810 EVGKGSTFWFTLPL 823 Score = 46.2 bits (108), Expect = 0.025, Method: Composition-based stats. Identities = 12/117 (10%), Positives = 40/117 (34%), Gaps = 7/117 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142 + G+ + L + +G + + +V+ ++++ + + ++ + Sbjct: 471 IYQTTPEGFFVTANPALARMLGYPDLASLRDDIKNVATDVYVNRDRRDEFVDEIHQNGVV 530 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + ++ + +GT + I A ++N + + G V L Sbjct: 531 FNFESEIRRGDGT--FAWISENASARRNQNGDVLYYEG--TVEDITEHRKALQLTDE 583 >gi|326317598|ref|YP_004235270.1| signal transduction histidine kinase with CheB and CheR activity [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374434|gb|ADX46703.1| signal transduction histidine kinase with CheB and CheR activity [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1534 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 98/640 (15%), Positives = 207/640 (32%), Gaps = 35/640 (5%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 LG + + ++++ S + + Sbjct: 762 DELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVTLFNLIATDVGRPLSHLRTQLQ 821 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSL 311 E + + + N Y + ++ + ++ Sbjct: 822 YPELSEDARRVLERLALVEREVGASDGNWYLVRMLPYRTLDDRIAGVVLTFVDISERKQG 881 Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E+ V++ + G++ + N + + Y + I T L Sbjct: 882 QEALRRSEDRFSAIVNQAVVGVVQTELDGHITFVNRHYSHMLGYGHDELIG------TQL 935 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + ++ R ++ + L + A+ Sbjct: 936 LDLIHPADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGST-LWLHNSVSYLADAHGGPTAS 994 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPV 489 + + + + + + +L ++E + I + + I + N ++ GY Sbjct: 995 IVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRITTWNSGAERILGYSE 1054 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + + + + +L L+ L K+ + + Sbjct: 1055 NEAVGQLADMIFTPEDRAAGAPLSETSTALATGGALD-DRLHQRKDGSRFWASGALMPMH 1113 Query: 550 FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------------KSDFLAR 591 + + + D S+ + + L ++ K K FLA Sbjct: 1114 DDADTVVGFVKILRDQSDQRASQQALEQSRADLLKALRENEEARAALQAADATKDRFLAV 1173 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+R PL +I G S V+ + + A + R + +++DL+D+S++ Sbjct: 1174 LSHELRNPLASIAGASAVLATEGAATGDRDQA---ARIVQRQARAMAVLLDDLMDLSRLR 1230 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 G+M L V LDE V A+ + +LAD + Q+ N+ Sbjct: 1231 LGRMVLQQREVPLDEIVEAALEATLGAIRAAGHDFVQELPADTVMLLADPVRIAQVLANL 1290 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA +TP G+I +S T + LRV D G+GM ++ F Q P++ Sbjct: 1291 LSNAAKYTPDHGRIRLS-AWTEGGSIYLRVEDNGIGMDPETVDDMFTMFSQSPDAGMRHT 1349 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810 +G G+GL L + +V+ + G S P +G+ + PL Sbjct: 1350 QGLGIGLALVRNIVEMHQGTVRGESAGPGQGSRFTVQLPL 1389 Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats. Identities = 68/496 (13%), Positives = 142/496 (28%), Gaps = 57/496 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + +S + + + + P+ ++ L+ + Sbjct: 576 VDGEQNILHMSPSAGRFLVFHGGE----------------PSRNLMRLIHPALRIELRAA 619 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KKFSHL 207 L+ T P+ LAA P+ G V V LG L L Sbjct: 620 LYRAGRTGQ--PMRLAATPV-DAAG--------GRVRVAPEVRPVPELGPGLALVLLQML 668 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E+ H + D ++Q + ++ L + + L S E Sbjct: 669 PELPAAHHLAAEVPQDTAAEQ-------LDRELELLNAQLRSTIEQYEASTEELRASNEE 721 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E+ + T ++ ++ L + A D + + Sbjct: 722 LQAMNEELRSATEELETNREELQSINEELTTVNHELKSKVDELGHANSDMQNLMDATAI- 780 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 F+ + PS + L + D L T L P+LS++ L Sbjct: 781 ---ATVFLDRDLRITRFTPSAVTLFNLIATDVGRPLSHLRTQLQYPELSEDARRVLERLA 837 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 +R A + N + +P+ + + + + + + Sbjct: 838 LVEREVGA----------SDGNWYLVRMLPYRTLD--DRIAGVVLTFVDISERKQGQEAL 885 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + +I+ G+ +G I NR S + GY ++++ + Sbjct: 886 RRSEDRFSAIVNQAVVGVVQTELDGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQ 945 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + H + + K+ L L + L + + +DISE Sbjct: 946 LSAHLMRRLAEHGEP--FHIEKRCLRKDGSTLWLHNSVSYLADAHGGPTASIVVCNDISE 1003 Query: 564 WKQEKNKLSHAKKIAE 579 K+ +N L + + Sbjct: 1004 RKRAENALRESTERLR 1019 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 26/378 (6%), Positives = 105/378 (27%), Gaps = 13/378 (3%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGK 146 + G++ ++ +G ++IG +L D+ + H+ L ++ + Sbjct: 905 QTELDGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQLSAHLMRRLAEHGEPFHIE 964 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ L++ ++ L + + + + + ++ Sbjct: 965 KRCLRKDGSTLWLHNSVSYLA--DAHGGPT--ASIVVCNDISERKRAENALRESTERLRL 1020 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLL 262 + E ++ + + + + V L + +D Sbjct: 1021 VIENAVEYAIFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSET 1080 Query: 263 TSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 ++ ++ +D + +++ + +++ ++ S + Sbjct: 1081 STALATGGALDDRLHQRKDGSRFWASGALMPMHDDADTVVGFVKILRDQSDQRASQQALE 1140 Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + A FL + ++ + + G S +L + Sbjct: 1141 QSRADLLKALRENEEARAALQAADATKDRFLAVLSHELRNPLASIAGASAVLATEGAATG 1200 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + + +A + ++ E + + Sbjct: 1201 DRDQAARIVQRQARAMAVLLDDLMDLSRLRLGRMVLQQREVPLDEIVEAALEATLGAIRA 1260 Query: 439 DTRINKRKMEIEVMQLCS 456 +++ + + L + Sbjct: 1261 AGHDFVQELPADTVMLLA 1278 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 37/351 (10%), Positives = 91/351 (25%), Gaps = 29/351 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNT 142 ++ D + + + +G + +G + + + L Sbjct: 1030 IFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSETSTALATGGA 1089 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +G+ A +P++ GF V + R +D RA + L++ Sbjct: 1090 L-DDRLHQRKDGS--RFWASGALMPMHDDADTVVGF-----VKILRDQSDQRASQQALEQ 1141 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + L + + + K++ ++ + +L Sbjct: 1142 SRADLLKALRENEEARAALQA---------ADATKDRFLAVLSHELRNPLASIAGASAVL 1192 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 +E ++ +++ I Q + + + E Sbjct: 1193 ATEGAATGDRDQAARIVQRQARAMAVLLD---------DLMDLSRLRLGRMVLQQREVPL 1243 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 E V+ T D + IA L+ LL + + Sbjct: 1244 DEIVEAALEATLGAIRAAGHDFVQELPADTVMLLADPVRIAQVLANLLSNAAKYTPDHGR 1303 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ I + I + E M + + + + GI Sbjct: 1304 IRLSAWTEGGSIYLRVEDNGIGMDPETVDDMFTMFSQSPDAGMRHTQGLGI 1354 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 39/459 (8%), Positives = 101/459 (22%), Gaps = 20/459 (4%) Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 ++ +P GD + L G + D + R Sbjct: 218 LAPPHGTEPPASGGDAADDEAALREVLALLRHRTGRDFG---DYKRATVVRRVGRRMQVN 274 Query: 180 GFGIV--HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237 G G + +++ + P G L + + + + + Sbjct: 275 GIGTMSGYLDCLRTRPGESGALLQDLLISVTNFFRDPVAFAALESHLPQLFQGKTGADTL 334 Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + + T + + + + + + F S Sbjct: 335 RVWVAGCATGEEAYSIAMLLAEYARTLDTAPVLQIFATDLDDAAIRAARDGFYPAAIESD 394 Query: 298 ESFEYLSH---RNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFL 349 S E L R + E++ D + L Y N Sbjct: 395 VSAERLRRFFVRERGGYRVRRELRESVLFAVHDLLRDSPFSRLDLISCRNLLIYLNREAQ 454 Query: 350 -LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + ++ D L+R +A L Sbjct: 455 HRVLDTFHFALLPGKLLFLGSAESVDDGDTRFSVIDKLHRLYGHQTSAHPDLLRPGGLAP 514 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVD---TRINKRKMEIEVMQLCSILEATSDGI 465 + A+ + ++ + + L +LE + Sbjct: 515 AAAALHAQHAAHQGPVVHAGAMVPYFADTERPPAQAAGEKALPWGEVHLR-LLEQLAPPS 573 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +++ E IL + + + + + + + + L L Sbjct: 574 ILVDGEQNILHMSPSAGRFLVFHGGE-PSRNLMRLIHPALRIELRAALYRAGRTGQPMRL 632 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + + ++ + + + + E Sbjct: 633 AATPVDAAGGRVRVAPEVRPVPELGPGLALVLLQMLPEL 671 >gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437] Length = 595 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 163/369 (44%), Gaps = 22/369 (5%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L S+L SDG+ +R+G ++ +NR + + D + Sbjct: 240 RDALSQNEEEKGRLQSVLANMSDGVIATDRKGKVIVSNRRAEGMLDKKIGDGEEINQVLP 299 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 L + L LD + E + T + ++ + + + D Sbjct: 300 LANPLVFPVTEMRQTFLELDAQDEEELTVIKLT----FTPV---LRASREAVGLIVVLQD 352 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E ++ + +F+A VSHE+RTPLT I + E + ++ Sbjct: 353 VTEEEKL--------------DRQRKEFVANVSHELRTPLTTIKSYLEAL-DEGGAMEEP 397 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + + +++DLL +S++++ K+ P+ L+ + +A Sbjct: 398 ELASRFMRVTRQEAERMTRLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCR 457 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K I + S ++PR+ AD + Q+ N+LSNA+ +TP G +I ++ S+ V + Sbjct: 458 QKEIDFQLSLEEDLPRVYADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVA 517 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G+G+ +LE+ + F ++ ++ GTGLGL +A+ +V A+ G + S K Sbjct: 518 VADRGIGIPKKDLERIFERFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGK 577 Query: 801 GTLIEIIFP 809 GT + P Sbjct: 578 GTTVRFTLP 586 >gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ] Length = 627 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 179/386 (46%), Gaps = 26/386 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAII----NREGI-----ILSTNRAVSKLFGYPVEDILRK 495 +++ + ++ +A +G A+ + +G I N+A +L G E ++ K Sbjct: 110 QRLTSSEERFHALFDAMVEGCALHRIQYSPDGTPVNYVIEEANQAFEQLLGLKREQVVGK 169 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P T + ++P + Y +++ E + ++ + R+ ++ Sbjct: 170 PATEAYQTDSPLYLQEY-ATVVATGQPSRFESCCAPLDRHFRISACRV------GPERFA 222 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DI+E K L + + + KS FLA +SHEIRTPL I G +++++ Sbjct: 223 TLFEDITEQKSHVETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEM 282 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P EY N+ID S +L+++ND+LD SKIE+ ++ L P + + + + ++ Sbjct: 283 PPA----QREYLNFIDSSAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVM 338 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 +L K +L+ ++ +L D + QI N++ NAI FT +GG+I++ + S Sbjct: 339 RLRTQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNLVGNAIKFT-AGGEIVVRASSRSR 397 Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + + V+D+G+GM + +PF Q +S R GTGLGL + K +V+ G Sbjct: 398 GDGTVLFAVEVQDSGIGMDQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHG 457 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816 + S+P G+ PL P Sbjct: 458 TITVASSPGNGSTFCFAVPLKPGVLP 483 >gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A] Length = 798 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 256 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 315 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 316 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 370 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 371 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 427 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 428 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 483 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 484 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 540 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 541 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 600 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 601 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 660 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 661 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 718 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 719 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 778 Query: 807 IFP 809 P Sbjct: 779 CIP 781 Score = 41.2 bits (95), Expect = 0.74, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 285 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 342 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 343 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 397 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 398 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 453 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 454 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 513 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 514 ERRLMATVHDLSIA 527 >gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC 25196] Length = 1118 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 127/620 (20%), Positives = 227/620 (36%), Gaps = 28/620 (4%) Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 L + L + + + K++ +R +K L H D +L Sbjct: 51 ELRQSSDDLTRTARAYVATGNPKFEQIYFDILA--IRNGDKERPLHYERGHWDLILGHLN 108 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 SL Q + K ++ L+ R + + +A Sbjct: 109 PESAPGRRISLRSQIRKLGFTATELAK-------LTKAENRSNQLTEREYKAFNAMKGLF 161 Query: 319 ENLTPE-TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 ++ E V P S + Y ++ ++ +T+ A + Sbjct: 162 QDSAGEFGVKGAPDAALASSLLHDESYHTAKAEIIRLLNEFHELLDKRTRNTMALAQNRA 221 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + A S R+ + +N + E Sbjct: 222 NLYISGVFFMLAFLMAWFAFSYRV--VHRKVQNLAWLEDKARNIGEASNSPSFYIDSNDE 279 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + E + + + +AI + N A +K+FGY E++L KP Sbjct: 280 IGSLSRAFIVAQAERDRY---FNQSLNFLAISGFDNRFKRVNTAWTKVFGYSEEELLSKP 336 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 F + + + L +++ + + K+ + I + Sbjct: 337 FMDLVFSGSRADTAAELDKLVMG---SNVSFESQMRCKDGSFRWVLWNIAAAQDVREFYF 393 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 + DI+ K + +L +A+K AE + KS+FLA +SHEIRTP+ ++G ++ N Sbjct: 394 SGQDITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNTTLT 453 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 P E A SG +L I+ND+LD SKIE+GK+ + P L +AV E +V Sbjct: 454 P----SQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVA 509 Query: 677 LY-ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH-- 731 + A + + + + N+PR + DL ++Q+ +N+ +NAI FT G I + Sbjct: 510 MQPARKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGHVLIDVEAEALS 569 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V D+G+G+ +L+ F Q S R GTGLGL ++K +V G Sbjct: 570 EDEVSLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGT 629 Query: 792 FYIFSTPAKGTLIEIIFPLY 811 S G+ PL Sbjct: 630 IAAKSRVGAGSTFWFTLPLA 649 Score = 46.2 bits (108), Expect = 0.023, Method: Composition-based stats. Identities = 25/255 (9%), Positives = 57/255 (22%), Gaps = 25/255 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 K ++ K G +++ D+ D L + ++ + Sbjct: 311 DNRFKRVNTAWTKVFGYSEEELLSKPFMDLVFSGSRADTAAELDKLVMGSNVSFESQMRC 370 Query: 152 IEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ + + R FSG + + K + Sbjct: 371 KDGS--FRWVLWNIAAAQDVREFYFSG-------QDITARKNIERELQNARKAAEAANRA 421 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSL 269 K + + P + V L + + Sbjct: 422 KSEFLANMSHEIR-------TPMNGVLGAVGLLLNTTLTPSQRELAGLARASGETLLCII 474 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + DF I + L +E ++ + + N+ + Sbjct: 475 NDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPARKANV------NVIVRYLPNV 528 Query: 330 PIPFFVYSHGNLFYA 344 P F G + Sbjct: 529 PRYVF-GDLGRIRQV 542 >gi|116749808|ref|YP_846495.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698872|gb|ABK18060.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 1509 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 125/786 (15%), Positives = 242/786 (30%), Gaps = 85/786 (10%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGD 135 F + +D G + + +TIG +M G L + +L D I + Sbjct: 611 DVLPGMF-FVLDTEGRFVRWNRVVRETIGTSDEQMDG--LDALIPVLAEDRHLIAGAIRN 667 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + +R TT I G N + I F G Sbjct: 668 VFERGYA---DTTARIITGQNEVRHFYFSGKKIVIGKNTFLLATGL----DVTERQKAED 720 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--------------- 240 +++ + E + V + + + +K Sbjct: 721 ALISANQQLYDIIEFLPDATLVLDNGKRVIAWNRAIETMTGASKQDMIGKGDNACMVPLY 780 Query: 241 ----SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 L + DD L+++ + + + E L + Sbjct: 781 GGPRPHLPDLIDVGDDELESKYHYVKRAGNVVYAETFLPCVYGGKGAYVMAKAAPLFDAH 840 Query: 297 KESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLL 351 + + E + +D P F + G + N + + Sbjct: 841 GNRVGVIESIRDITEYKQAEEALRESRRQLADIIDFLPNATFVIDREGRVIAWNRAIEEM 900 Query: 352 TKYKSVDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 T + D + G +L L + A HT Sbjct: 901 TGVNAADMLGRGDYEYALPFYGKRRPILIDLVLHPLGQEGAAYSKIGKGGTV-FEAEEHT 959 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + + + + + + + + SI E Sbjct: 960 PTLRGRGAY-LIGTASVLRDSKGNIVGAIESLRDITERKRMEEALARAEEKYRSIFENAL 1018 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 +GI EG LS N +++++ GY + + T Q L+L+ Sbjct: 1019 EGIFQTTPEGRFLSVNPSLARILGYGSPEETIRSVTDLSRQVYVDPERRLELLQLTLERG 1078 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIA 578 + K+ L ++I ++ + T DI++ K +++L A+KI Sbjct: 1079 IVQDFEIQVQRKDRSLAWIKISLRGVRDRGGRLIYMEGTAQDITDRKVLESRLLQAQKI- 1137 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++H+ L AIIG++E+ + + +P Y + + ++ + Sbjct: 1138 ----EAIGTLAGGIAHDFNNILAAIIGYTEMTRQT----VEHPDPRRYLDQVLKACDRAR 1189 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++V +L S+ K PV + V EA+ ++ + I IR A +L Sbjct: 1190 NLVGQILAFSR----KAERDIRPVDVRSIVKEALKFLRATLSS-TIKIRQKIAPGTHAVL 1244 Query: 699 ADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTS--------------NEEVILRVRD 743 AD + Q+ +N+ +NA H GG + + + + L + D Sbjct: 1245 ADPTQIHQVLINLCTNAAHAMREKGGVLQVDLENIDVRPGSTAFPADLPSGPYLKLTISD 1304 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG G+ + L + PF GEGTGLGL + +V G + S P G++ Sbjct: 1305 TGTGIDHAILHRIFDPFFTTK----RPGEGTGLGLSVVYGIVKECGGTVTVSSEPGAGSV 1360 Query: 804 IEIIFP 809 + P Sbjct: 1361 FSVWLP 1366 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 66/549 (12%), Positives = 143/549 (26%), Gaps = 66/549 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDV-------SDILHIDPN-----N 131 T+ I + + L K G + MIG L +D + Sbjct: 474 TFVIGKDHRVLYWNAALEKFSGIGSEDMIGTNRHWSAFYDGERPCMADLLLDEDLKEFSK 533 Query: 132 HIGDLLKRQNTWYG---KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 G ++ + G T P GT + + A P+ G V Sbjct: 534 RYGHAARKSDLVAGAFEATPFLPNLGTGGK-WLHVTAGPVRDSRGAIVGA--VQSVQDIT 590 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 ++ + L ++ G V + R+ + ++ Sbjct: 591 ERKLAELALQQEKEFSDTLIDVLPGMFFVLDTEGRFVRWN------RVVRETIGTSDEQM 644 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-----------TLQNNSK 297 D L ++ + + + N+ Sbjct: 645 DGLDALIPVLAEDRHLIAGAIRNVFERGYADTTARIITGQNEVRHFYFSGKKIVIGKNTF 704 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356 L + ++ P V +G + N + +T Sbjct: 705 LLATGLDVTERQKAEDALISANQQLYDIIEFLPDATLVLDNGKRVIAWNRAIETMTGASK 764 Query: 357 VDDIEI----------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 D I G L D + D+ + + A L + Sbjct: 765 QDMIGKGDNACMVPLYGGPRPHLPDLIDVGDDELESKYHYVKRAGNVVYAETFLPCVY-- 822 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + + + + + QL I++ + Sbjct: 823 GGKGAYVMAKAAPLFDAHGNRVGVIESIRDITEYKQAEEALRESRRQLADIIDFLPNATF 882 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLR- 522 +I+REG +++ NRA+ ++ G D+L + + + ++ + L + Sbjct: 883 VIDREGRVIAWNRAIEEMTGVNAADMLGRGDYEYALPFYGKRRPILIDLVLHPLGQEGAA 942 Query: 523 --------QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570 E T + L L S + ++ DI+E K+ + Sbjct: 943 YSKIGKGGTVFEAEEHTPTLRGRGAYLIGTASVLRDSKGNIVGAIESLRDITERKRMEEA 1002 Query: 571 LSHAKKIAE 579 L+ A++ Sbjct: 1003 LARAEEKYR 1011 Score = 118 bits (297), Expect = 3e-24, Method: Composition-based stats. Identities = 45/424 (10%), Positives = 116/424 (27%), Gaps = 25/424 (5%) Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH---------SSVEKEKYDIFSQQS 229 R F IV + + + K+ L E + + + + Sbjct: 309 RAFLIVEEEKKRKVAEQALRVSEVKYRTLFESARAAICIIQDWKFVDANESARALLGIRE 368 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 +S L E+ + + + + F + + Sbjct: 369 GMDFDSAMENLSPCGLPGGGDSRQLLRERIRAVLASGAPEAFELRFLRGDGTRLDMYASV 428 Query: 290 GTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANP 346 L+ + + ++ E + + P P F + + Y N Sbjct: 429 DRLELGAQTLVQAIIRDITAYKQAIEATEKSERMLHRIIQASPNPTFVIGKDHRVLYWNA 488 Query: 347 SFLLLTKYKSVDDIE-----------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + + S D I ++ LL L + + +SD A Sbjct: 489 ALEKFSGIGSEDMIGTNRHWSAFYDGERPCMADLLLDEDLKEFSKRYGHAARKSDLVAGA 548 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 A + + + + + + ++ + ++ E Sbjct: 549 FEATPF-LPNLGTGGKWLHVTAGPVRDSRGAIVGAVQSVQDITERKLAELALQQEKEFSD 607 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++++ +++ EG + NR V + G E + + + ++ + Sbjct: 608 TLIDVLPGMFFVLDTEGRFVRWNRVVRETIGTSDEQMDGLDALIPVLAEDRHLIAGAIRN 667 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + T +I G E + + ++ T D++E ++ ++ L A Sbjct: 668 VFERGYADTTARIITGQN-EVRHFYFSGKKIVIGKNTFLLATGLDVTERQKAEDALISAN 726 Query: 576 KIAE 579 + Sbjct: 727 QQLY 730 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 11/165 (6%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 I E+ ++ ++ + + ++ ++ E+ I II ++ + N + L G Sbjct: 308 TRAFLIVEEEKKRKVAEQALRVSEVKYRTLFESARAAICII-QDWKFVDANESARALLGI 366 Query: 488 PVEDILRKPFTVFLE------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ ++ + +L+ + + L + Sbjct: 367 REGMDFDSAMENLSPCGLPGGGDSRQLLRERIRAVLASGAPEAF--ELRFLRGDGTRLDM 424 Query: 542 RIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + +L + + DI+ +KQ ++++ + Sbjct: 425 YASVDRLELGAQTLVQAIIRDITAYKQAIEATEKSERMLHRIIQA 469 >gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 914 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 108/536 (20%), Positives = 208/536 (38%), Gaps = 40/536 (7%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVY-SHGNLFYANPSFLLLTKYKSVDDIE 361 + E D P + S G N + Y + + Sbjct: 2 GKSAEIVAREALERSEEKFRMLFDLFPDATVLIDLSTGLPVQFNRTAHTQLGYSAEE--- 58 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEK 420 ++ D A + + I S R Q + + Sbjct: 59 --------FAQLQIPDYEAQETPEETAAHIQTIMESGRDDFETQHRTKGGAILDIRVTVM 110 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + + + + + +R ++ +L ++ G+ + E IL + Sbjct: 111 KLEIGAKPHFLCVFRDISEQKQLQRTLQESRDRLEVAADSAQIGVWDYDVERDILVWDEW 170 Query: 481 VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + +++ +D + ++ L S + ++ L Q + + Sbjct: 171 MYRIYNISADDFTGAYEAWSQALHPEDFSWVTALFSQALLDPKVQ-FNPVFRIIWPNGTI 229 Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE-------KESSHKSD 587 +++ K SS + DI+E Q + +L ++ S+ KS Sbjct: 230 RTIKATSKVALNSSGKAIRVVGSNRDITEQHQAQEELKKSEAQLTIAKEQAEAASAAKSA 289 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTP+ AI+GFS + P +Y ID+S + +L I+ND+LD Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDELPPKP----RDYLEKIDQSAHSLLKIINDILDF 345 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+GK+ + P L E + ++ + EK + + + +P ++ D + Q Sbjct: 346 SKIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQ 405 Query: 707 IALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + +N+ +NA+ FT G +I++ + E+ ++D+G+GM ++ + +PF Q Sbjct: 406 VLINLTNNAVKFTEQG-EIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQ 464 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHP 816 +S GTGLGL + + +V++ G+ + STP KG+ IFP + P Sbjct: 465 ADDSTTRSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSFNAIFPRDSQASP 520 >gi|91790296|ref|YP_551248.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91699521|gb|ABE46350.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 839 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 106/628 (16%), Positives = 222/628 (35%), Gaps = 37/628 (5%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 L + E+ + + ++ + + ++ + A + Sbjct: 105 QDMLALKNLIARRVELMEQTIAARQQAG--LEAAAALVGSDLNRQLHQEIDGLAQRIKSA 162 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 +T E + ++ ++ + +Q + A Sbjct: 163 ETLTLGRSKEEARQSAQTVEWLILSGGVLSLAVLAWAIQ------MIGRFQAQRRLVEAR 216 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E ++ + G + AN + L Y D I ++TLL A Sbjct: 217 LSDSEAMSRAITESMAEGVMTATPQGVIVGANSAARTLFGYTLDDLIGRQ--VATLLPAR 274 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 SD A + R + + + ++ + I Sbjct: 275 YQSDFTAFYEALASRPRGFRESGT-EVSGVRRDGTEF---PVHVSFGDVHVGGQRLFTAI 330 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + ++R + + QL + + IA ++++ + N+A + FG E I Sbjct: 331 IRDITESRRISQALRDSEAQLRQLTDTVPALIAYVDKDQRLQFHNKAYEEAFGLTHEQIH 390 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 +K + + + + ++ E L+ E+ + + + + + Sbjct: 391 QKTLLEVMGEEFYAGVKDHVAEALA-GYSVRYEREQVSVGGGRREYVMNYFPRYGEGKAW 449 Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + +D++E K+ KS+F++ VSHE+RTPLT+I G Sbjct: 450 DQAIGFFALGNDVTELKRI--------------DRMKSEFVSTVSHELRTPLTSIRGSLG 495 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ G L + + ++ ++ND+LD KIESGKM +PV LD + Sbjct: 496 LVWGGVTGELP-EKAKALVGIAKNNCERLIRLINDILDSEKIESGKMRFEMQPVELDPLL 554 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + ++ + +A + ++ + + D + Q+ N+LSNAI F+P+ G + + Sbjct: 555 EQVLAANEGFAAQHQVKLVLRTGRRPVLVNVDSDRLTQVVTNLLSNAIKFSPAEGTVQV- 613 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V + + D G G+ + + F Q S + GTGLGL ++KAM++ Sbjct: 614 LLRSGAGRVRVEISDKGPGIPEEFRQHIFQKFSQADASDTRQRGGTGLGLSISKAMLERM 673 Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + GT P + + P Sbjct: 674 EGSIGFTTEQNVGTTFFFELPEWKEAPP 701 Score = 44.2 bits (103), Expect = 0.089, Method: Composition-based stats. Identities = 20/208 (9%), Positives = 54/208 (25%), Gaps = 18/208 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ----NTWYGK 146 G + + G +IG ++ + + + L + + Sbjct: 240 PQGVIVGANSAARTLFGYTLDDLIGRQVATLLPARYQSDFTAFYEALASRPRGFRESGTE 299 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205 + +GT V + + G R F I+ + + + Sbjct: 300 VSGVRRDGTEFPVHVSFG-------DVHVGGQRLFTAIIRDITESRRISQALRDSEAQLR 352 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + + + + H + + LT H+ +L+ Sbjct: 353 QLTDTVPALIAYVDKDQRLQ------FHNKAYEEAFGLTHEQIHQKTLLEVMGEEFYAGV 406 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + + E +++ + G + Sbjct: 407 KDHVAEALAGYSVRYEREQVSVGGGRRE 434 >gi|242280724|ref|YP_002992853.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123618|gb|ACS81314.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1083 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 122/632 (19%), Positives = 234/632 (37%), Gaps = 35/632 (5%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 L R + + + KE Q P + + ++ ++ Sbjct: 96 LMARHARDMTGELLGSDRYRLNVKEFAVAIDSQLAEPMRLALSGKTGTLTGEDYRGVLVV 155 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 P+ + + + L + R + + Sbjct: 156 AAYTPVNIGGNRFGFVAKVDLREMVRPIWQTSLGIVILAGVLIGWGAWRFLRLVNPVISK 215 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 ++ + P + G + N L Y + + + L+ Sbjct: 216 LEDEIRANEAMIATSPSGIIVIEDDGQVVQFNTVASQLFGYSKDEVVGQNVKI--LMPPN 273 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 S +N+ L +R I + + + +F + + GI Sbjct: 274 IASRHNSFIKRHLDTGERRVIGVGREVEGQRKDGS---LFPLHLAIGKMEFQQRVRFIGI 330 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DI 492 + + + + + +E + G+ I++ +G I N A ++ GY ++ Sbjct: 331 LTDISALKTAEEGLRQKHR----AVEESPVGVIIMDLDGRIEYLNPASLRIHGYHAAVEL 386 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K F VF P+ + L ++ + ++ L+ +R + Sbjct: 387 EGKYFNVFESSEIPTDAYSNMWAQLKAG--ESWKGELQNKRQDGSLVWVRQHFCPIRMED 444 Query: 553 C----YSLTMHDISEWKQEK-----------NKLSHAKKIAEKESSHKSDFLARVSHEIR 597 Y D++E+++ + +L AK AE+ + K+ F A +SHEIR Sbjct: 445 GSIKHYLSIQEDVTEFREHRSILEQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIR 504 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AI+GF+EV+ + + + I S +L I+ND+LD+SK+ESGK L Sbjct: 505 TPINAILGFAEVVMQD---SDLSSQTAGHVGTILSSAKSLLGIINDILDVSKMESGKFAL 561 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716 L A+++A+ ++ A+EK + + + N+ R + D ++Q+ LN+ NA+ Sbjct: 562 EIVCFHLPNALADALRTLEHRADEKSLKLALDYDVNLSTRFMGDPTRLRQVVLNLAGNAV 621 Query: 717 HFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 FT G I I E+ V DTG+GMT ++ K F Q S R GTG Sbjct: 622 KFTEHGS-ITIGVEVGDAPEILHFFVSDTGIGMTEKQVAKVFDSFSQADESTTRRFGGTG 680 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 LG ++K +V+ G+ ++ S KG++ Sbjct: 681 LGTTISKQIVEMMDGEIWVESQLGKGSVFHFT 712 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 13/154 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146 +D G ++ ++ + G +A ++ G D +++ LK +W G+ Sbjct: 361 MDLDGRIEYLNPASLRIHGYHAAVELEGKYFNVFESSEIPTDAYSNMWAQLKAGESWKGE 420 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ V + PI + + + + Sbjct: 421 LQNKRQDGSL--VWVRQHFCPIRMEDGSIKHYL---------SIQEDVTEFREHRSILEQ 469 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + K+ + ++ M +++ Sbjct: 470 TVRERTAELEKAKDAAEEGARVKAAFTANMSHEI 503 Score = 38.1 bits (87), Expect = 7.1, Method: Composition-based stats. Identities = 36/366 (9%), Positives = 100/366 (27%), Gaps = 22/366 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I+ G + + + + G +++G + + +N +++ G+ Sbjct: 237 IEDDGQVVQFNTVASQLFGYSKDEVVGQNVKILMPPNIASRHNSFI----KRHLDTGERR 292 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFS---GFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + D + P++ + R GI+ + + Sbjct: 293 VIGVGREVEGQRKDGSLFPLHLAIGKMEFQQRVRFIGILTDISALKTAEEGLR----QKH 348 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV------LKTEKY 259 E + I + + L Y + + + + Sbjct: 349 RAVEESPVGVIIMDLDGRIEYLNPASLRIHGYHAAVELEGKYFNVFESSEIPTDAYSNMW 408 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L + ES E ++ + + +Q+F ++ YLS + + Sbjct: 409 AQLKAGESWKGELQNKRQ-DGSLVWVRQHFCPIRMEDGSIKHYLSIQEDVTEFREHRSIL 467 Query: 320 NLT--PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 T T + + A + + ++ I G ++ LS Sbjct: 468 EQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIRTPINAI--LGFAEVVMQDSDLSS 525 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A + S ++ + + + A+ + F N + + ++ Sbjct: 526 QTAGHVGTILSSAKSLLGIINDILDVSKMESGKFALEIVCFHLPNALADALRTLEHRADE 585 Query: 438 VDTRIN 443 ++ Sbjct: 586 KSLKLA 591 >gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 714 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 92/403 (22%), Positives = 168/403 (41%), Gaps = 13/403 (3%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + +E E+ D R + + L +I++ ++ I + + EG L Sbjct: 155 RVRERTAELASSNAALEAENADRRRAELALRESQHLLQAIIDNSTAVIFVKDLEGRYLMI 214 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 NR +LF + I K + + ++ +E+ Sbjct: 215 NRRYEELFHVTAQWIAGKTDYDLFPAECADALRAFDRRAVAAGGPLEIEESVPQGDGLHT 274 Query: 538 LLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSH--AKKIAEKES-----SHKSDFL 589 ++++ + + DIS+ K+ + + ++ A + K +FL Sbjct: 275 YIAIKCPLFDESGRAYAVCGISTDISDRKRTEAEREMLLCREQAARAELERTGRLKDEFL 334 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHE+RTPLTAI+G+S+++ R + I+R+ +V+DLLD+S+ Sbjct: 335 ALLSHELRTPLTAILGWSQLL---RLRGPSDEILGRALGTIERNARAQSKLVDDLLDMSR 391 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I G+++L E V L E + + + A K I + S + +++ D ++QI Sbjct: 392 IIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVMGDPNRLQQIVW 451 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FT GGQ+ +S L V DTG+G+ L + F Q S Sbjct: 452 NLVSNAMKFTRQGGQVKVSLR-REGTYARLAVSDTGIGIAPEFLPYVFEQFRQADASTTR 510 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811 G GLGL + + +V+ + G S +G + PL Sbjct: 511 EYGGLGLGLSIVQHLVELHGGTVEASSAGKDQGASFTVKLPLS 553 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 30/333 (9%), Positives = 78/333 (23%), Gaps = 17/333 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTT 148 D G I+ + A + G D+ D + + + Sbjct: 206 DLEGRYLMINRRYEELFHVTAQWIAGKTDYDLFPAECADALRAFDRRAVAAGGPLEIEES 265 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G L+ I + P++ + + GI A + L + Sbjct: 266 V--PQGDGLHTYIAIKC-PLFDESGR--AYAVCGISTDISDRKRTEAEREMLLCREQAAR 320 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + ++ E + S + P + +++ L ++ Sbjct: 321 AELERTGRLKDEFLALLSHELRTPLTAILGWSQLLRLRGPSDEILGRALGTIERNARAQS 380 Query: 267 SSLPEQEDFHTINLNQYTKKQY---FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + D I + + + ES E + L + Sbjct: 381 KLVDDLLDMSRIIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVM 440 Query: 324 ETVDKCPIPFFVYSHGNLFYANP------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 ++ + + + S Y + + G++ Sbjct: 441 GDPNRLQQIVWNLVSNAMKFTRQGGQVKVSLRREGTYARLAVSDTGIGIAPEFLPYVFEQ 500 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + S H ++ + Sbjct: 501 FRQADASTTREYGGLGLGLSIVQHLVELHGGTV 533 >gi|114567640|ref|YP_754794.1| bacteriophytochrome-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338575|gb|ABI69423.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 727 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 111/734 (15%), Positives = 243/734 (33%), Gaps = 54/734 (7%) Query: 93 GY-LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + +L +G + M D+ + +G +R L Sbjct: 26 GRKFSYANPKLQNDLGYSLEEFYSMDFWDIVHPDLREMTRQMGLARQRGEEVPDSYELRL 85 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + + A G R + A R + L E Sbjct: 86 LGKQGNCFWVHIKAKNT-----SVEGERTVIVSAFDISERKAIEADLLRQKESLLLLLEN 140 Query: 211 KKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + + ++V + + Sbjct: 141 NPVATVLVDPEGKTLYVNPRFIEYTGYGLEEVSTSQVWEENVLAEMPNRREIMRSWYQNL 200 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E + + + + L + + + E ++ Sbjct: 201 KEIGYSKGKVVLRRRDGERRFFNIHSVALPDGHIVLAAWD-INDQVEAQKILQESQDRFK 259 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE------IAGGLSTLLDAPKLSD 377 + + +G AN + L Y + I A ++ + +S Sbjct: 260 ALSEASFEGIIITENGICIEANQAAEELFGYSREELIGLDVMSFTAPEAREIVKSQMMSA 319 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + A ++ R D T + + + + A + Sbjct: 320 SQAPYEAIVLRQDGTRVPVEIQGRSFIYQGREVRA-------------------AAIRDL 360 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + R + ++ + L ++ T D + + + IL N + FGY +E+ Sbjct: 361 SERRRAEEEIYRQSTNLQALFYNTPDAVVLCDSLHRILDANPRFFEFFGYSIEECRGFIL 420 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 L + +++ ++S + + ++ K +LL + + + + SS Y + Sbjct: 421 EEVLVPEEMREESAFMSRMVSDGQA--ISRESMRKKKNGELLPVLVTMIPI-ASSGYYVL 477 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DISE K+ + + K E +++ F VSH++R+PL I GFS ++ Sbjct: 478 YTDISERKEAEATIQQQIKELEAKNAEMERFTYTVSHDLRSPLITIKGFSGLLLQD-LEK 536 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 R + I + + +++ DLL++S+I G++ + +++ E + L+ Sbjct: 537 GKTARLQKDIQRIINASGKMEELLEDLLELSRI--GRILNPYSNFPMNQLCFEVVELLSG 594 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEE 736 ++K+ + A +P + D R + ++ N+L NAI F + I + E Sbjct: 595 PISQKKAEVVV--APYMPWVQGDRRRIAEVVQNLLENAIKFMGDNERPRIEIGYFPGEGE 652 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + ++D G+G+ EK F ++ S EGTG+GL L K +++ + G+ ++ S Sbjct: 653 CVFFIKDNGIGIEAKYREKVFGLFDKLDQST----EGTGIGLALVKRIIELHQGRIWVES 708 Query: 797 T-PAKGTLIEIIFP 809 +G+ P Sbjct: 709 AGAGQGSTFYFTLP 722 Score = 90.9 bits (224), Expect = 8e-16, Method: Composition-based stats. Identities = 39/376 (10%), Positives = 103/376 (27%), Gaps = 31/376 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQNTWY 144 +D G ++ + G ++ ++ + + + + I LK Sbjct: 148 VDPEGKTLYVNPRFIEYTGYGLEEVSTSQVWEENVLAEMPNRREIMRSWYQNLKEIGYSK 207 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 GK L +G + I ALP + + + + + +F Sbjct: 208 GKVVLRRRDGERRFFNIHSVALP----DGHI-----VLAAWDINDQVEAQKILQESQDRF 258 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLT 263 L E + + I + Q+ ++ L + + K +++ Sbjct: 259 KALSEASFEGIIITENGICIEANQAAEELFGYSREELIGLDVMSFTAPEAREIVKSQMMS 318 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + ++ P + + + + + Q + Sbjct: 319 ASQA--PYEAIVLRQDGTRVPVEIQGRSFIYQGREVRAAAIRDLSERRRAEEEIYRQSTN 376 Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 P + + ANP F Y + L +L ++ + +A Sbjct: 377 LQALFYNTPDAVVLCDSLHRILDANPRFFEFFGYSIEEC--RGFILEEVLVPEEMREESA 434 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + SD I+ R + L + A+ + + + Sbjct: 435 --FMSRMVSDGQAIS---RESMRKKKNGELLPVLVTMIPIASS-----GYYVLYTDISER 484 Query: 441 RINKRKMEIEVMQLCS 456 + + ++ ++ +L + Sbjct: 485 KEAEATIQQQIKELEA 500 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 6/121 (4%) Query: 459 EATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E T IA+I G N + GY +E+ F + + + + Sbjct: 15 ENTDIMIAVI--RGRKFSYANPKLQNDLGYSLEEFYSMDFWDIVHPDLREMTRQ-MGLAR 71 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 K+ + I + ++ DISE K + L K Sbjct: 72 QRGEEVPDSYELRLLGKQGNCFWVHIKAKNTSVEGERTVIVSAFDISERKAIEADLLRQK 131 Query: 576 K 576 + Sbjct: 132 E 132 >gi|182414886|ref|YP_001819952.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842100|gb|ACB76352.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 689 Score = 338 bits (868), Expect = 2e-90, Method: Composition-based stats. Identities = 107/566 (18%), Positives = 212/566 (37%), Gaps = 23/566 (4%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + + + + Q+ + L+ Sbjct: 1 MHRDAADRPTGDQSGDRHDAGERSSPAQSDQPQDREGVTPGELASALREREE-------- 52 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + D P + + G + Y N + + P D+ Sbjct: 53 GFRQLADAMPQLVWTANPDGRVDYYNARWREYAGISPATEGSEPSWDWAPTLHP---DDE 109 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A R+ T H ++ + + + G + D Sbjct: 110 AATIHAWRRAIGTGRPYQIE-HRVRMADGRVRWHLSRGIPRRDATGRIIKWYGTATDIHD 168 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPF 497 R+ + + + + + +AT+D I + + + A GY E I + + Sbjct: 169 FRVAQEEARLNEERYRLVAQATNDVIWDWDLRTNQIGWSEATLANLGYTAEQIGTSFENW 228 Query: 498 TVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554 + + ++ + ++ + E + R I + Y Sbjct: 229 RERVHPADRARLDASIQAAIASGGDTWSDEYRFRRQDGSYGVFLDRGHIARDKSGRAYRM 288 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ D++E ++ + +L AK AE+ S K +FLA +SHE+RTPLT ++ +++++ +R Sbjct: 289 IGSLLDLTERRRVEAELRQAKDDAERASRAKDEFLAALSHELRTPLTPVLMMTQMLEQER 348 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P P + I R+ L + +++DLLD+++I GK+ ++ E V + + +AI + Sbjct: 349 SFP---PEVRDDLRTIRRNVELEMRLIDDLLDLTRITRGKLRMNEEIVDVHRVLQDAIKI 405 Query: 675 -VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 ++KR+ +R F N + D + Q+ N++ NA+ FTP G I + T + S Sbjct: 406 GCDDMCSQKRLRVRCEFEANRSAMRGDTARLGQVFWNLIKNAVKFTPEDGAITLRTRNPS 465 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 E + +RV DTG+G+ L + F Q R G GLGL + +A+V+ + G Sbjct: 466 PERLEVRVADTGIGIEASVLPQIFNAFEQGGAHITRRFGGLGLGLAICRALVELHHGTIV 525 Query: 794 IFST-PAKGTLIEIIFPLYDTSHPHD 818 S P G + P + D Sbjct: 526 ARSEGPGHGAEFIVELPTCPDATAQD 551 Score = 79.3 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 30/380 (7%), Positives = 86/380 (22%), Gaps = 36/380 (9%) Query: 22 TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81 T D S + D G + ++ + P Q E S + F Sbjct: 10 TGDQSGDRHDAGERSSPAQSDQP------QDREGVTPGELASALRERE--EGFRQLADAM 61 Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLL 137 + W + G + + + G D + LH D + Sbjct: 62 P-QLVWTANPDGRVDYYNARWREYAGISPATEGSEPSWDWAPTLHPDDEAATIHAWRRAI 120 Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + + + +G +P + +G + Sbjct: 121 GTGRPYQIEHRVRMADGR--VRWHLSRGIPRRDATGRII--KWYGTATDIHDFRVAQEEA 176 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSL------TEYYAHK 250 + ++++ + + + + +L + + Sbjct: 177 RLNEERYRLVAQATNDVIWDWDLRTNQIGWSEATLANLGYTAEQIGTSFENWRERVHPAD 236 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 L + S + ++ F + + ++ S ++ + + Sbjct: 237 RARLDASIQAAIASGGDTWSDEYRFRRQDGSYGVFLDRGHIARDKSGRAYRMIGSLLDLT 296 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + A FL ++ + ++ +L Sbjct: 297 ERRRVEAELRQAK------------DDAERASRAKDEFLAALSHELRTPLTPVLMMTQML 344 Query: 371 DAPKLSDNNAIKPVMLYRSD 390 + + + R + Sbjct: 345 EQERSFPPEVRDDLRTIRRN 364 >gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65] gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65] Length = 1120 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 116/594 (19%), Positives = 219/594 (36%), Gaps = 53/594 (8%) Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 L + ++ + +L S P + ++ + L++ + + Sbjct: 413 DLDMPWRDDAIAIQKQDQEVLAGRFDSSPFEGKLIGVDG-VSWVQARKMPLKSINDKVLG 471 Query: 302 YLSHRNHPS-----------LSAYFDEGENLTPETVDKCPIPFF--VYSHGN--LFYANP 346 L + ++ +E + +D P Y + N Sbjct: 472 VLGVYQDITDYKSVIEQLNSQNSLINESNQKLSQLIDSSPDIIVYREYQEDRLIISVYNH 531 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 F + + + LS V++ D+ A + L Sbjct: 532 MFEKWVGDLTDE-------KDCVFSKEVLSVLEEKDSVVVRELDQVLYKAESSLS----- 579 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + I + +TR +++ ++ T D Sbjct: 580 DGRRVLLDIVKVPVFSDLNIVKGILFIGRDVTETR----ELQ---SLYEALFSLTQDPFF 632 Query: 467 IINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNH------YLTEILSL 519 +I+ G I S N A +++ G +++ + E + Sbjct: 633 VIDEVGAISSCNDAGAQILGLENRTNLIGMRLIEHFTPEYQPDGERSESKVKRVNESVEK 692 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI 577 ++ + + +R+ I +L + HDI + + L AK Sbjct: 693 ASDARVQFDFTHKDIDGNPIHVRVFIVRLNGGPKKRLLVQWHDIKDMYAREESLRQAKAD 752 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHEIRTPL A++G S ++ + + +Y I+++ + Sbjct: 753 AEELADQKSMFLANMSHEIRTPLNALVGLSNLL----VANETHVKAQDYMRSINKASIHL 808 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIP 695 IV+D+LD SKI++ +++L V+ DE + E SL + A EK + N+I Sbjct: 809 KSIVDDILDFSKIDADRIDLDEIAVNFDEFLCEIKSLHEQSAREKGLHFEVDNRLDNDI- 867 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I+ D +QI N++SNAI FT G I+++ E ++L V DTG G+ +L Sbjct: 868 AIVIDPVRYRQIINNLVSNAIKFTEKGEVIVVT--KKQQESLLLSVCDTGCGLDENQLSN 925 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q + + GTGLGL + K + + G + S KG+ + P Sbjct: 926 LFDPFSQADITTTRKYGGTGLGLSICKGLAERMSGSISVSSELGKGSCFYVSIP 979 Score = 67.7 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 9/154 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF 500 ++++ L S+L+ G+ + L N+ + G+ EDI+ K Sbjct: 357 RERQRLLEGSDLLRSVLDLIPVGVYWKDDRLRFLGCNKRFLRDSGFESFEDIVGKSDLDM 416 Query: 501 LEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555 ++ + E+L+ E +G + ++ L + Sbjct: 417 PWRDDAIAIQKQDQEVLAGRFDSSPFEGKLIGVDG---VSWVQARKMPLKSINDKVLGVL 473 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 DI+++K +L+ + + + S + Sbjct: 474 GVYQDITDYKSVIEQLNSQNSLINESNQKLSQLI 507 >gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 772 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 100/496 (20%), Positives = 184/496 (37%), Gaps = 31/496 (6%) Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + F+ G+ NP+ Y + + + G+ ++ Sbjct: 41 YRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV------LSRGVDSG 94 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L R R + + ++ ++ GI + + Sbjct: 95 WAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGK-------ILGIARDVSER 147 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + + L +IL+ I I + +G + N A + G P + + Sbjct: 148 KRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGIPRNAAVGRRLNEL 207 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSL 556 + ++ + ++ LR + S+ Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDAAGGVVDVGGISI 267 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ + + +L A A S K DFLA +SHEIRTP+ +IG E+++ Sbjct: 268 ---DITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDL- 323 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 +PR EYA S +L ++N +LD SKIES ++ L P ++ EAV A+ + Sbjct: 324 ---DPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFR 380 Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A K +++ ++P ++ D QI N++ NA+ FT G I + + + Sbjct: 381 AVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGA-ITVQLGAAAVD 439 Query: 736 EVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + V DTG G++ + + PF Q S GTGLGL + + +V+A G Sbjct: 440 DCRIDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGV 499 Query: 792 FYIFSTPAKGTLIEII 807 + S P G+ Sbjct: 500 ISVASEPGMGSTFSFR 515 Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats. Identities = 39/396 (9%), Positives = 95/396 (23%), Gaps = 25/396 (6%) Query: 45 CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104 C S + +T + T L + + + + +DA G+ +++ + Sbjct: 12 CAASVLGAPYTLLCRLLPRITADLRYGSGYR-ALFEHAIDGIFIMDAEGHYLDVNPAICS 70 Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 IG + + + +S + + + T+W G L V + Sbjct: 71 AIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAH 130 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 LP + + G I + + + + + + Sbjct: 131 LLP----DGKILG-----IARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTL 181 Query: 225 -FSQQSPPPHLRMKNK--VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 + + + V + + E ++ Q++F Sbjct: 182 RLANNAWERETGIPRNAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQDEFLDFGAG 241 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 L++ + + + + + Sbjct: 242 VRVFHTIKFPLRDAAGGVVDVGGISIDITDRSKMEGELRAAHA------AAVDSSRAKID 295 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 F AN S + T + G LL L + S + +A + Sbjct: 296 FLANMSHEIRTP------MNGVIGTLELLRETDLDPRQREYAEIARESAESMLAVINMVL 349 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L + +PF + Sbjct: 350 DYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAAR 385 >gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2] gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2] Length = 783 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763 Query: 807 IFP 809 P Sbjct: 764 CIP 766 Score = 41.2 bits (95), Expect = 0.77, Method: Composition-based stats. Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + S V +L + T Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318 T E E + + + + +S + E Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498 Query: 319 ENLTPETVDKCPIP 332 E TV I Sbjct: 499 ERRLMATVHDLSIA 512 >gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti AK83] Length = 917 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 119/638 (18%), Positives = 225/638 (35%), Gaps = 27/638 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + R S + ++ + + + Sbjct: 23 RITDLPISARVAALTAAGLISLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAF 82 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYL 303 + L L+ S+ ++ +E + ++ E Sbjct: 83 GDLRYWLTDLSVSL--LMNSQRNADEARERLQEQLAGLAKHAPEAVEAIRTEVDAYVETA 140 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 G L + L + + + V E Sbjct: 141 LQAADSYTQDNRIVGNALLAKARTHS--GKVDADLNRLVEQVKAEAEAARNEVVVQTEKT 198 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + +L + + + ++L RL+ + + IP E ++ Sbjct: 199 ATTAAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVDIPEEGGDE 254 Query: 424 FPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + E + + + + E + + + LE SDG + + E IL N Sbjct: 255 LGAMARTLSLFRESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYC 314 Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----- 536 ++F + + + F +EQN E++ L Sbjct: 315 EIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEK 371 Query: 537 --KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +RI +K+P DI+E KQ + +L AK AE + KS FLA +SH Sbjct: 372 RFGDKWVRISKRKIPD-GGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSH 430 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AIIG+SE++ + + + + I +G +L ++ND+LD+SKIE+ K Sbjct: 431 ELRTPLNAIIGYSEMLIEEARDHE-DEELVPDLDKIASAGRHLLSLINDILDLSKIEANK 489 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 M + E S+ + + + + V + F ++ + +D ++Q N+LSN Sbjct: 490 MEVFLETFSVADLLRDVAATVAPLMARNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSN 549 Query: 715 AIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A FT +GG++ + + ++ +V DTG+GM+ + E+ F Q S Sbjct: 550 AAKFT-NGGRVTLRVRREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNY 608 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + ++ G + S KG++ I P Sbjct: 609 GGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTIEVP 646 Score = 41.9 bits (97), Expect = 0.42, Method: Composition-based stats. Identities = 18/235 (7%), Positives = 52/235 (22%), Gaps = 3/235 (1%) Query: 90 DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D+ + + + + + + G ++ + + K W + Sbjct: 301 DSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG--KSPQEWVDERV 358 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L + R+ + + +R + Sbjct: 359 RLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESAN 418 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E K + + + + + D L S + Sbjct: 419 EAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIASAGRHLLSLIND 478 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + + L + + L RN L+ F+ Sbjct: 479 ILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARNGNELTQDFETDLGEMH 533 >gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1474 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 127/827 (15%), Positives = 279/827 (33%), Gaps = 115/827 (13%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 WN D G++ + + G + +G + I L WY K Sbjct: 436 WNTD--GHIVDWNPAAESIFGYCRDEALGHPSTLIVPPAAQAQIKQIKAKL-----WYDK 488 Query: 147 TTLWP------IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +G + + P+ G + + + + Sbjct: 489 QVARSCNQNITKDGRT--IICEWYNTPLIDSQGNLLGIASMAL--DITQRQETQTALRES 544 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDV 253 +++F+ + K + + P + + + + Sbjct: 545 EERFALAIQANDSGLFDINFKTNTYYYSPQFLHLIGYPEDRDTPSFDELMARVHPEDQSM 604 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHP 309 +K L SE S + N + L++ + + + + Sbjct: 605 VKISIDQLFISELSQWKLEFRMVHSNGSTPWFLSRGLVLRDENGKVTRIVGTHTDISDRK 664 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIA-GGL 366 A E E + + FF+ + +FY +P++ + + L Sbjct: 665 QAEAALLEREEQFRQLAENIREVFFLTTPDLSRMFYLSPAYEEVWGRSRESLYDQPMTWL 724 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + A+ + + ++ + + F + + Sbjct: 725 DNIHPYDRDRVAEALG-----KQLQGEQDFEQEYRILRPDGSE-RWVWVRTFRVFDDKGK 778 Query: 427 NMPQNGIEPEDVDTRINKRKMEIE----------------VMQLCSILEAT--------- 461 GI + + + ++ ++ + +QL +IL+ T Sbjct: 779 MTRIAGIAEDITERKHSEAELRRQTLQRQLFAEITLKIRQSLQLDAILQTTVTEVRRILQ 838 Query: 462 --SDGIAIINREGIILSTNRA---------VSKLF------GYPVEDILRK--PFTVFLE 502 I +N +G + A +++ GY + + + Sbjct: 839 VDRVVIYQLNDDGTGVIMTEAVVPGWTPIQGQEIYDPCFREGYLEQYRQGRIRAIEDLYQ 898 Query: 503 QNTPSVMNHYLT--EILSLDLRQTLEKITLGST---------KEEKLLSLRIIIKKLPFS 551 + L + + + L++ L ++ ++ + ++ + Sbjct: 899 ADLEPCHIELLQPFGVRANLVVPILQRENLWGLLIAHQCSGPRQWEMFEIELLSQLADQV 958 Query: 552 SCYSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + E + +L A++ AE + KS+FLA +SHE+RTPL I+ Sbjct: 959 GIALAQSQLLEEQTRISQQLAEKNLHLEQARQEAETANHAKSEFLANMSHELRTPLNGIL 1018 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G+ +V+K + P + + + I + G +L ++ND+LD+SKIE+ KM+L Sbjct: 1019 GYVQVLKRE---PHPTAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQF 1075 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 + I +V++ A+EK I + +P+ + D + ++Q+ +N+L NAI FT G Sbjct: 1076 PHFLEGIIEMVRIRADEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINLLGNAIKFTDQGS 1135 Query: 724 QIIISTTH--------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I + ++ + ++ DTG+G+ +L PF QI + + EGTG Sbjct: 1136 -ITFKVGYTSAQAPATEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQI-GDRNRQVEGTG 1193 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820 LGL +++ +V G+ ++ S +G+ + P D + Sbjct: 1194 LGLAISQRLVQLLGGELHVESNVGQGSTFYVDLELPAVSPDQAIDVV 1240 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 93/275 (33%), Gaps = 22/275 (8%) Query: 396 ASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 A+A + ++ + + + + + E V+ + ++ + +L Sbjct: 363 ATAYQELCDRDTQSRHIVAHLDQQFQERTAALKAANRQLLAEVVEQKQMEKALRKNDQRL 422 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +++ T + N +G I+ N A +FGY ++ L P T+ + + + Sbjct: 423 SLLVQQTPLAVIEWNTDGHIVDWNPAAESIFGYCRDEALGHPSTLIVPPAAQAQIKQIKA 482 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 ++ + TK+ + + L S + DI++ ++ + Sbjct: 483 KLWYDKQVARSCNQNI--TKDGRTIICEWYNTPLIDSQGNLLGIASMALDITQRQETQTA 540 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRT----P--LTAIIGFSEVIKNQRFGPLGNPRYI 624 L +++ L ++ + T P L I G+ E P + Sbjct: 541 LRESEERFALAIQANDSGLFDINFKTNTYYYSPQFLHLI-GYPE--------DRDTPSFD 591 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 E + ++ I D L IS++ K+ Sbjct: 592 ELMARVHPEDQSMVKISIDQLFISELSQWKLEFRM 626 >gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 874 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 101/532 (18%), Positives = 191/532 (35%), Gaps = 27/532 (5%) Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPS 347 F + + + + E V + ++ Y P Sbjct: 352 FLSFRREQALELAKRMTQTIRDNETRLRQSEERYQLAVRGSNDGIWDWNLETGHMYYAPR 411 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 F L Y+ T + + + + + + Sbjct: 412 FQALLGYEE----GSFSNTFTEFEQKIHPQDKNPVLQAIKAHLESESPYDITHRLLTRSG 467 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E N+ + G + ++ + + E +IL +DGI Sbjct: 468 E-WRWFRSRGAAIRNKENVAIRMAGSISDIHQQKLAEAEAEEHAQHTQAILNNINDGIIT 526 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--- 524 ++ G I S NRA ++F Y + ++ + + + +++ LS LR Sbjct: 527 VDEIGFIASFNRAAERIFHYNADSVIGYNLKRLFANYSDNDASESMSDYLSASLRSDASG 586 Query: 525 LEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 E+ G + + + I + ++ + + + DI+E K+ Sbjct: 587 EEQEIEGVRQNGERFPVGISVSEVHRRAERLFIVVVRDITERKRV--------------D 632 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K++F++ VSHE+RTPLT+I G ++ N G + + ++ + ++N Sbjct: 633 RMKNEFISTVSHELRTPLTSITGALSLLLNGAVGQ-PTEEFSRFLQIAYKNSQRLALLIN 691 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLLD+ KI +G + F + V ++I ++Y + + + + I D Sbjct: 692 DLLDMEKITAGGVKYSFSVEPVMPLVEQSIDTNRVYGQQHEVEYKIIHREDASLINVDPL 751 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +QI N LSNA F+P G + IS N V + V D G G+ + K F Q Sbjct: 752 RFQQILANFLSNAAKFSPQGCTVDISVQRREN-YVRISVTDRGPGIPPEFYTRIFKKFSQ 810 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +S + + GTGLGL +++ + G+ S KG + PL S Sbjct: 811 ADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATFYVELPLASGS 862 >gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 597 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 171/374 (45%), Gaps = 26/374 (6%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 ++ + I + + G I+ N + S+LF + + + Sbjct: 244 RRSEEWYRAVFSGIREAILVTDAAGDIILVNPSASRLFRLEGAMFQSRSTALV----SDE 299 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQ 566 + L + E++T+ + K +++L + + + + ++DI+ + Sbjct: 300 GLRTLLQRVHGSKKAIVKEEMTVTTLKGKRILQISSMPVMREGVFDGTVFVLNDITRLRN 359 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE- 625 + + DF++ VSHE+RTPLT+I G++E + + G + + + E Sbjct: 360 LE--------------RIRRDFVSSVSHELRTPLTSIRGYTETLLD---GAMHDAEHTEA 402 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I + + +VND+LD+SKIESG++ F PVSL E V ++S + +K + Sbjct: 403 FLRIIHQESEQLTALVNDVLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVR 462 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDT 744 + S ++P + D ++ + N+L NA+ + G+I +S V L V D Sbjct: 463 LDLSIPADLPLVRGDASYLEIVVRNLLDNAVKYVDEHNGRIRLSAAKRD-GFVTLEVEDN 521 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L++ + F ++ ++ + GTGLGL + K +V A+ G + S +GT Sbjct: 522 GIGIAQKDLDRIFERFYRVDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAF 581 Query: 805 EIIFPLYDTSHPHD 818 + P+ D HP D Sbjct: 582 TLTLPVADQ-HPLD 594 >gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] Length = 873 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 12/376 (3%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 L S+ + L TK ++ + + + + + + DI+ Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDIT 352 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +S N ++ I+ND+LD SK+E+GK+ L E L V +L A++K Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + ++ D + QI LN++ NA+ FT G +++ + V Sbjct: 469 NLKLLVDIPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESELGF-DFSV 526 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L M F Q+ S R EGTGLGL ++K ++ G+ + S G Sbjct: 527 TDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGNG 586 Query: 802 TLIEIIFPLYDTSHPH 817 + L S PH Sbjct: 587 SCFSFSLQLPKRSQPH 602 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148 G + ++ + +++G ++ D N + ++ + + Sbjct: 257 PDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +V ++L+ P++ N E R + + K Sbjct: 317 NYTKSQRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392 Score = 50.8 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E + + + G + + N +F LT+Y + + + G LL D + Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A +L +S R+ + ++ + ++ E + +E + D Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPY-WVELELSPVFDENGELLRFIAVERDITD 353 Query: 440 TRINKRKMEIEVMQ 453 R ++++ + + Sbjct: 354 RREMEKRLSSALDK 367 >gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 797 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 120/659 (18%), Positives = 250/659 (37%), Gaps = 58/659 (8%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + ++ D P K V +T A + Sbjct: 121 ADPSGRIIGAYPAIPGLKGTLADYLGPAQPLTTFAEKAGVLRITLADATEALATVRTLGL 180 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYF-DE 317 + + + + + + F T + Y + + Sbjct: 181 ASAGQVALIHPMTEVLSEWRANSWRAGLLLFSTSFVLVALACAYFWQATRAKEAGETCER 240 Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 +++ + + + + S + + G ++ L+ Sbjct: 241 MRERIDTALNRGRCGLWDWDLARGRVFWSQSMYEILGMSPSEQFISFGDINALMHPQDGD 300 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + ++D A ++ + + + + GI + Sbjct: 301 LAAIAEMLAASKTD-----AIDHAFRMRNVAGDWVWLRARAELVRDHLSNTPHLVGICVD 355 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RK 495 + ++ + M+L +E S+ + + + ++ N + + ++ Sbjct: 356 ITEHKVLAERTATADMRLRDAIETVSEAFVLWDADNRLVMCNEKFQRFHNLANDILVPGT 415 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P+ + + TP ++ ++I + Q + + + L + ++ Y Sbjct: 416 PYMQVMAKGTPPLIQ---SQIALGERPQAGARTYEARLGDGRWLQIN---ERRTKDGGYV 469 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK----------------------------------- 580 DI+ K+ + +L +++ Sbjct: 470 SVGTDITTLKRHEEQLMESERRLMATIADLRKSRQTLELQAQQLADLAEKYLEQKAEAET 529 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS+FL +SHE+RTPL AIIGFSE++ + +GPLG+PRY++Y N I +SG +L + Sbjct: 530 ANRAKSEFLTNMSHELRTPLNAIIGFSELMGQEPYGPLGSPRYLDYCNDIRQSGQYLLGV 589 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 ++D+LD+S++E+G++ L +D VS+AI+ V+ A EK I + + AD Sbjct: 590 ISDVLDMSRLEAGRVRLEKTDFEIDTVVSKAIAGVKATAEEKEITLLAETTPQT-SVHAD 648 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++++I L +L NAI FTP+ G++ + T + + V DTG+G+ L + +PF Sbjct: 649 RGAIEKILLILLRNAIKFTPAQGRVTVRTRMI-QGALNIYVEDTGMGIPPAPLARLGRPF 707 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 Q+ S +G+GLGL +A+++VD + G I ST GT++ + P P+D Sbjct: 708 EQLHGSMANGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVRIP-----EPNDI 761 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 52/248 (20%), Gaps = 9/248 (3%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G S+ + + +G + D++ ++H + I ++L T Sbjct: 256 LWDWDLARGR-VFWSQSMYEILGMSPSEQFI-SFGDINALMHPQDGDLAAIAEMLAASKT 313 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 +V + A + G + D Sbjct: 314 DAIDHAFRMRNVAGDWVWLRARAELVRDHLSNTPHLVGICV--DITEHKVLAERTATADM 371 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + E + + H + + T Y Sbjct: 372 RLRDAIETVSEAFVLWDADNRLVMCNEKFQRFHNLANDILVPGTPYMQVMAKGTPPLIQS 431 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E + + + ++ S + Sbjct: 432 QIALGERPQAGARTYEARLGDGRWLQINERRTKDGGYVSVGTDITTLKRHEEQLMESERR 491 Query: 321 LTPETVDK 328 L D Sbjct: 492 LMATIADL 499 >gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1233 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 98/713 (13%), Positives = 233/713 (32%), Gaps = 81/713 (11%) Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV-------EKE 220 + + G + V A RL + ++ ++ + Sbjct: 262 VADPDGFLIGLLTWTDVAAVLSGIVSDAETARLRDQADRYRDLYDNAATGLFRLDHQGRP 321 Query: 221 KYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278 + + + + + S + D + E P S+ + + Sbjct: 322 VAVNAALSRMLGYRDVADCLRQSRQPAHPLRLDGPSRRELMPRALSQADPVTFEARGPRR 381 Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF--DEGENLTPETVDKCPIPFFVY 336 +++ + + +A + ++ + Sbjct: 382 EGGYRRLACSVRAVRDAYDQPTGFEGACADVPQAAVPGGPSDDAGYRSLIEHQTELICRF 441 Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G L + N ++ + P L ++A S Sbjct: 442 DPAGRLIFVNAAYARYWGKTPEVCLAENF-------QPALHPDDAAMVARRVASLCPHRP 494 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + + + + E + + + ++ ++ ++ +L Sbjct: 495 TTGYEVRVLRPDGRARYQRWTRRAIFDAAGELVEYQAVGRDITPRKLAEQSLKRRAEELH 554 Query: 456 ---------------------------------------SILEATSDGIAIINREGIILS 476 ++L DG+ +++ E +L+ Sbjct: 555 VLAEEKNAEAAALADRLGAALADGRRLADALREKTFFLDAVLAGVQDGVCLLSPEMEVLA 614 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 NR++ ++ +I+ + + + ++ + + Sbjct: 615 VNRSLRGMYA-SRGEIVGQRCHEVYHGLSAPCQDCPSLRAMATRKLAIS--VVPKDDPGD 671 Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + ++ + D++ K+ + +L+ A + AE S K FLA + Sbjct: 672 SAGWVELFCYPMLDAAGSVAAVVEIVRDVTAGKKLEAELAAALERAEAASQAKGAFLANM 731 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTPL A++G+ +++ R P + ++ S +L I+ND+LD SKIE+ Sbjct: 732 SHEIRTPLNAVLGYVQLMLRDRLEPA----QRQRLAVVEESAATLLSIINDILDYSKIEA 787 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711 G++ + E L + ++ + ++ A EK + + +P + D ++QI N+ Sbjct: 788 GRLEIKAESFDLAQCLAAVVKEQEVLAREKGLTLDLQLDPGLPGSVRGDGLRLRQILRNL 847 Query: 712 LSNAIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAMKPFG 761 ++NA+ +T G + + + + V DTGVG+ +L F Sbjct: 848 VNNAVKYTEHGS-VTLRASLLDRSPCPTGSGERVTLRFAVIDTGVGIPADQLPAIFDSFT 906 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q+ R GTGLGL + + + G+ ++ S KG++ + P + Sbjct: 907 QVDGGLTKRQAGTGLGLAICRRLAGLMSGEVFVDSVAGKGSVFWLECPFEAAA 959 Score = 71.6 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 29/274 (10%), Positives = 69/274 (25%), Gaps = 13/274 (4%) Query: 61 SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120 S + T L + D + +D G ++ L + +G + Sbjct: 287 SDAETARLRDQADRYRDLYDNAATGLFRLDHQGRPVAVNAALSRMLGYRDVADCLRQSRQ 346 Query: 121 VSDILHIDPNNHIG---DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177 + L +D + L + + + EG + + + + +G Sbjct: 347 PAHPLRLDGPSRRELMPRALSQADPVTFEARGPRREGGYRRLAC--SVRAVRDAYDQPTG 404 Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHL 234 F G V G D + L E + + + Sbjct: 405 FEGAC----ADVPQAAVPGGPSDDAGYRSLIEHQTELICRFDPAGRLIFVNAAYARYWGK 460 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQ 293 + ++ + H DD + E + ++ + Sbjct: 461 TPEVCLAENFQPALHPDDAAMVARRVASLCPHRPTTGYEVRVLRPDGRARYQRWTRRAIF 520 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + E EY + + ++ E + Sbjct: 521 DAAGELVEYQAVGRDITPRKLAEQSLKRRAEELH 554 Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 32/404 (7%), Positives = 84/404 (20%), Gaps = 25/404 (6%) Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 W G + L P+ G R L + L Sbjct: 18 WRRAGDGAVMA-KLHETPLRDLPPAAPITLGL----WTTAAQAARTLLGAGAGEALVLDG 72 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + V D + ++ L Sbjct: 73 GRPLGVVTTSGLSKVLTHNIVQAAHLAVRDVMDPVAVSPESDYLPGALRHLLAAPSRRLA 132 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + G + E + + + + Sbjct: 133 VVDAAGRAVGMLAPFHVARLGVALDELAERTVASAMTRTVVTARAGEALPMVLARMTRLG 192 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 V T +V + + + +S A L + Sbjct: 193 VGGVVVARDDVPCGV------FTARDAVRLLAGGADIRDMAVDAAMSAPVATVAPQLPLA 246 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + + + + + + + ++ Sbjct: 247 EGLAG----------MDGAGAGRLVVADPDGFLIGLLTWTDVAAVLSGIVSDAETARLRD 296 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPS 507 + + + + + G+ ++ +G ++ N A+S++ GY + Sbjct: 297 QADRYRDLYDNAATGLFRLDHQGRPVAVNAALSRMLGYRDVADCLRQSRQPAHPLRLDGP 356 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + LS T G +E L ++ + + Sbjct: 357 SRRELMPRALSQADPVTF--EARGPRREGGYRRLACSVRAVRDA 398 >gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 966 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 96/526 (18%), Positives = 204/526 (38%), Gaps = 36/526 (6%) Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 SA + + + + V S G + N + ++ Y+ + I+ + Sbjct: 34 RKPASAEIIDTIKRSQSFLQQMGCIVIVLSLEGKIVEWNHAAEEISGYRREEVIDRNYWM 93 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L P+ + + + + + H + + + F N E Sbjct: 94 LCL---PESVRDGVKFRYLQAIATQQQVHVH---HILLGSDGRQQQVNFQIVPWRNYCGE 147 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + E+E +L ++ IA+ + E L+ + + Sbjct: 148 ILGAIVTGEPVACSPDGSCEQELECERLQQLISYLPLPIAMFDTEMRYLAYSEGWIQHLK 207 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + ++ + + + + ++ L+ + Sbjct: 208 PQIYSLIGLNHYDVFPNVKNDWKLAHKKALRGEKVSALEDSWIR---EDGSLIYHGWTVG 264 Query: 547 K----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 L + + N L + A KS FLA++SHEIRTP++ Sbjct: 265 PWYRNSGEVGGVILVIIPL-------NNLVETRNAALDAVQFKSRFLAQMSHEIRTPMSG 317 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G E++ P + +Y I RS +L ++N++LD+SK+E+G+ +L Sbjct: 318 VLGMVELLMQTHLTP----QQKDYTQTIYRSAKHLLTVINEILDLSKLEAGETHLESHDF 373 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 L + + + L+ + A +K++ + N+PR + D ++Q+ +N+++NAI FT S Sbjct: 374 DLQDCLETVVDLLAVKAEDKQLELIILLEPNLPRYLKGDGMRLQQVLINLVNNAIKFTKS 433 Query: 722 GGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G III T + + + DTG+G+++ + +PF ++ + GTGLG Sbjct: 434 G-HIIIRVTPRVISQDHINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTGLG 492 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI---IFP--LYDTSHPHD 818 L + + +V+ G+ + S +G++ P L +TS P + Sbjct: 493 LSICQHLVNLMGGEIGVKSQEEEGSIFWFNATFLPSELSETSAPKE 538 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 45/140 (32%), Gaps = 1/140 (0%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 P + + ++ + + S L+ + +++ EG I+ Sbjct: 11 PLVLTLGISAMISMVASLTLVRWRKPASAEIIDTIKRSQSFLQQMGCIVIVLSLEGKIVE 70 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A ++ GY E+++ + + + + + + ++ +Q + + + Sbjct: 71 WNHAAEEISGYRREEVIDRNYWMLCLPESVRDGVKF-RYLQAIATQQQVHVHHILLGSDG 129 Query: 537 KLLSLRIIIKKLPFSSCYSL 556 + + I L Sbjct: 130 RQQQVNFQIVPWRNYCGEIL 149 Score = 46.9 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 6/121 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTL 149 G + E + + G ++I + + + Q + L Sbjct: 65 EGKIVEWNHAAEEISGYRREEVIDRNYWMLCLPESVRDGVKFRYLQAIATQQQVHVHHIL 124 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G V + +P + E G G + + +RL + S+L Sbjct: 125 LGSDGRQQQVNFQI--VPWRNYCGEILGAIVTGEPVACSPDGSCEQELECERLQQLISYL 182 Query: 208 H 208 Sbjct: 183 P 183 >gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1] gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1] Length = 934 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 115/419 (27%), Positives = 189/419 (45%), Gaps = 17/419 (4%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSIL 458 +Q + + L + + + V+ ++NK + E E QL ++ Sbjct: 225 FWLQRSSDTKLQIALSSVTLFLCLGAYLYWRQWLQQHVEAKLNKELLDNEKERSQLAMVV 284 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E SD I I NR+G+ N A KL GY + + + K L+ S Sbjct: 285 EHASDAIVITNRDGLTTWVNSAFEKLSGYQLTETIGKKPGDLLQGIDTSK-EEIKRISDE 343 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574 L T++ L K+ + + I+I + + D S+ KQ + L A Sbjct: 344 LSQGHTVQSELLNYHKDGRPYWIDIVITPIRNIHNQIEQFIAVERDSSDRKQLEQNLQQA 403 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 ++A+ + KS FLA +SHE+RTPL I+G +++++ + ++ E + + SG Sbjct: 404 VQVADASNRAKSTFLATMSHELRTPLNGILGMAQILE----SSVTQAQHKEQLSVLLESG 459 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NN 693 N +L ++ND+LDISKIE GK+ L ++DE S IS NEK I + + + Sbjct: 460 NHLLSLLNDILDISKIEEGKLELEDIDFAIDELCSPIISTYSAICNEKGIQFKLNNQLPS 519 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVILRVRDTGVGM 748 D ++Q+ N+L NA+ FT G ++ S+ S E++ + V DTGVG+ Sbjct: 520 GKSFRGDKSRIRQLIFNLLGNAVKFTERGSVELVFSNSQSSMSKSKEQLNIDVIDTGVGI 579 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 N L PF Q S + GTGLGL + K + + G Y+ S KG+ + Sbjct: 580 PNDRLATIFDPFTQAEASTTRQFGGTGLGLAIVKKLSNLMGGDAYVSSELGKGSKFTVT 638 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 6/139 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146 + G ++ K G + IG + D+ + I D L + +T + Sbjct: 294 TNRDGLTTWVNSAFEKLSGYQLTETIGKKPGDLLQGIDTSKEEIKRISDELSQGHTVQSE 353 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +G ++ I + PI + + + F + + ++ + Sbjct: 354 LLNYHKDGRPYWIDIVI--TPIRNIHNQIEQF--IAVERDSSDRKQLEQNLQQAVQVADA 409 Query: 207 LHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 410 SNRAKSTFLATMSHELRTP 428 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 7/138 (5%) Query: 316 DEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 ++ + V+ + G + N +F L+ Y+ + I G LL Sbjct: 274 EKERSQLAMVVEHASDAIVITNRDGLTTWVNSAFEKLSGYQLTETIGKKPG--DLLQGID 331 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 S + + + L + + + N + +E Sbjct: 332 TSKEEIKR---ISDELSQGHTVQSELLNYHKDGRPY-WIDIVITPIRNIHNQIEQFIAVE 387 Query: 435 PEDVDTRINKRKMEIEVM 452 + D + ++ ++ V Sbjct: 388 RDSSDRKQLEQNLQQAVQ 405 >gi|162449198|ref|YP_001611566.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161159780|emb|CAN91085.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 779 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 100/644 (15%), Positives = 205/644 (31%), Gaps = 38/644 (5%) Query: 185 HVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 +RV A + ++ ++ + D Sbjct: 10 RCSRVPQGTPASLRPRHAHQLEREPPGAGNGSAARALGADGQDNPGAFEVGWIALDTFDG 69 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 S++ E + + ++P + S + + Sbjct: 70 STIDESVVTRSNRSSGRRWPCAAAGGRSRRRLMGHCCARHSPLPAATMTARRCGEQDGNG 129 Query: 301 EYLSHRNHPSLSAYFDEGENLTPE--TVDKCPIPF------FVYSHGNLFYANPSFLLLT 352 E N + + G + N + Sbjct: 130 EPRRVANVHPCCRLCRMDPTGLGADLQFRLLVEGVKDYAIFMLDTEGRVISWNAGAEQIK 189 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y + + I S A + + R ++ + A Sbjct: 190 GYSAQEVIG--SHFSRFYPAEAIERKWPQTELAEARRVGR---FEDEGWRVRKDGSMFWA 244 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINRE 471 I E I + + + + + + +++E D I +++ E Sbjct: 245 -NVIITALRGPDGELRGFCKITRDLTERKRQEESLRQSEERFRTLVEGVKDYAIFMLDPE 303 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G + N ++ GY ++++ F+ F + + + E Sbjct: 304 GRVTMWNAGAERIKGYSAQEVIGTHFSRFYPAEAIERGRPE-AVLAAARREGSFEDEGWR 362 Query: 532 STKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K+ + I +S D+SE K+ + S+ + + Sbjct: 363 VRKDGSSFWASVLVTAIYGPSGELRGFSKITRDLSERKRLEQMESN--------ARQMEE 414 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A ++HE+R PL I + V+ + N + + A ++R ++ +V+DLLD+ Sbjct: 415 FVAMLAHELRNPLAPIANATSVL---KLEGKDNAQVVWAAGLMERQLGQLVRLVDDLLDV 471 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQ 706 S+I GK+ L + + L + V+ A + + + + + + + DL + Q Sbjct: 472 SRITRGKIALESKRIDLADVVTRAAEASRTWIDAREQTLELQLPEGPLAIVSGDLARLTQ 531 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N+L NA FTP G I ++ + ILRVRD GVG++ L + F Q Sbjct: 532 VVSNLLHNAAKFTPPRGAIRVTVE-ADDAHAILRVRDNGVGISPELLPQVFDLFTQGDRG 590 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + +V+ + G S P +G+ + P Sbjct: 591 LDRVEGGLGLGLTIVRRLVELHGGTVQALSEGPGRGSEFIVRLP 634 Score = 85.1 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 37/365 (10%), Positives = 100/365 (27%), Gaps = 9/365 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + + + G A ++IG I+ +L + + Sbjct: 169 IFMLDTEGRVISWNAGAEQIKGYSAQEVIGSHFSRFYPAEAIERKWPQTELAEARRVGRF 228 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + W + ++ + + E GF I ++ +++F Sbjct: 229 EDEGWRVRKDGSMFWANVIITALRGPDGELRGF--CKITRDLTERKRQEESLRQSEERFR 286 Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E K ++ + + + + ++ +V + + ++ + + Sbjct: 287 TLVEGVKDYAIFMLDPEGRVTMWNAGAERIKGYSAQEVIGTHFSRFYPAEAIERGRPEAV 346 Query: 263 TSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + ED + + + + S E + S ++ E Sbjct: 347 LAAARREGSFEDEGWRVRKDGSSFWASVLVTAIYGPSGELRGFSKITRDLSERKRLEQME 406 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + + + + AN S L L + + AG + L + Sbjct: 407 SNARQMEEFVAMLAHELRNPLAPIANATSVLKLEGKDNAQVVWAAGLMERQLGQLVRLVD 466 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + R + L + + E+ + I D+ Sbjct: 467 DLLDVSRITRGKIALESKRIDLADVVTRAAEASRTWIDAREQTLELQLPEGPLAIVSGDL 526 Query: 439 DTRIN 443 Sbjct: 527 ARLTQ 531 >gi|298249186|ref|ZP_06972990.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297547190|gb|EFH81057.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 845 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 112/735 (15%), Positives = 237/735 (32%), Gaps = 54/735 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTWYGK 146 G + +I++ +++G L D+ SD + R T + Sbjct: 144 PDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDPAVQEHLRAAIARAARGETVRFE 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + P +L + I + +++ G + L Sbjct: 204 AKIHPRL--DLSLAILMTITAHRDASQQVEYLICAG--RDITERKHAEDELRTLVDALPQ 259 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L I + V + L L + ++ + + Sbjct: 260 LVWIARPDGYVTYHNQRLI--DYMAMTLEQAEGDGWLASVHPDDRQRVRAAWQTSIQTGV 317 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324 E + +N ++ ++ + E Sbjct: 318 PYEVELRLQDGTSGAYRWFLVRGMPQRNAQGTILHWVGTCTDIDDQKRAEQRIKESEENW 377 Query: 325 --TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P + G + Y N + LT+ + + L +A Sbjct: 378 RVLAETVPQLVWTTRPDGRVDYCNQRYCDLTQ-ADFEQLRDYRW------RQFLHPEDAE 430 Query: 382 KPVMLYR---SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + L + + RL Q ++ + G + Sbjct: 431 RALTLRQQSLATGELFENEQRLRDGQT--GRYRWFLARALPVRDEAGQIDKWFGTCTDID 488 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + + + ++ ++ ++ GI + E I+ N ++ GY ED+ Sbjct: 489 DQKRMEEALRESQERVNILMNSSIIGIFLA-EEEQIVDVNDTYLRMTGYTREDLQAGNIN 547 Query: 499 VFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYS 555 + E++ EK + K+ LL + + + L Sbjct: 548 WMRMTPPKYLARTQQARQELVVQQYGTPYEKEYVC--KDGSLLPVVVGVVALRRDPLHTI 605 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D S K+ + + K DF++ SHE+R PL A+ + + +R Sbjct: 606 GFVLDNSARKELEQR--------------KDDFISMASHELRNPLAALKMQIQ-LVRKRL 650 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + ++ + ++ +LLD+SKI++G++ E V LD + E + Sbjct: 651 ERQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTM 710 Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q + I++R PR+L D + Q+ N+LSNAI ++P + + + + Sbjct: 711 QQLSTTHTIVVR----GAAPRVLVGDKDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEE 766 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V +RV D G+G+ + +K + F ++ +Q G G+GL + +V + G + Sbjct: 767 -TVTVRVHDHGLGIPREQRDKIFERFYRVAGPKQKAIPGLGMGLYIVAEIVKHHGGTLTV 825 Query: 795 FSTPAKGTLIEIIFP 809 S KG+ + P Sbjct: 826 DSAVGKGSTFTVTLP 840 Score = 134 bits (337), Expect = 7e-29, Method: Composition-based stats. Identities = 56/524 (10%), Positives = 126/524 (24%), Gaps = 38/524 (7%) Query: 69 DSENTFVFDPIPRTV--RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126 +++ T P R + +D + + G ++ L Sbjct: 3 NAKQTRRVTPGSRETLPDALFVVDDTETIVYANASAQAITGTTPEELRRNSFWRCVPRLV 62 Query: 127 IDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 P + + + + P+ T + ++ P + Sbjct: 63 STPLYQAVQKAKQTREP-TEVEYVSPVTNT----WLHVSLSPT-DEGLAL-------LFQ 109 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 N + R ++ + L E G + V + + Q P ++ + T Sbjct: 110 ENLEPPHFQDALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQRPLADAHLRREQVVGT 169 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-----TINLNQYTKKQYFGTLQNNSKES 299 L + + E L+ T ++ + Sbjct: 170 PLTDLPAWSSDPAVQEHLRAAIARAARGETVRFEAKIHPRLDLSLAILMTITAHRDASQQ 229 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 EYL E+ VD P ++ G + Y N + Sbjct: 230 VEYLICAGRDITER--KHAEDELRTLVDALPQLVWIARPDGYVTYHNQRLIDYMAMT--- 284 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 +E A G L RL Sbjct: 285 -LEQAEGDGWLASVHPDDRQRVRAAWQTSIQTGVPYEVELRLQDGTS--GAYRWFLVRGM 341 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + N + G + D + +++++ + E + +G + N Sbjct: 342 PQRNAQGTILHWVGTCTDIDDQKRAEQRIKESEENWRVLAETVPQLVWTTRPDGRVDYCN 401 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EK 537 + L E + + FL + L+ + E + + Sbjct: 402 QRYCDLTQADFEQLRDYRWRQFLHPEDAERALTLRQQSLATG--ELFENEQRLRDGQTGR 459 Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577 + + + T DI + K+ + L +++ Sbjct: 460 YRWFLARALPVRDEAGQIDKWFGTCTDIDDQKRMEEALRESQER 503 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 34/399 (8%), Positives = 94/399 (23%), Gaps = 24/399 (6%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T +E+ + W GY+ ++ L + + G Sbjct: 241 TERKHAEDELRTLVDALP-QLVWIARPDGYVTYHNQRLIDYMAMTLEQAEGDGWLASVHP 299 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + Y + Y + +P + + G Sbjct: 300 DDRQRVRAAWQTSIQTGVPYEVELRLQDGTSGAYRWFLVRGMPQRNAQGTILHW--VGTC 357 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSS 242 K ++ + L E + + L + ++ Sbjct: 358 TDIDDQKRAEQRIKESEENWRVLAETVPQLVWTTRPDGRVDYCNQRYCDLTQADFEQLRD 417 Query: 243 LTE---YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + + T + L + E EQ +++ + + Sbjct: 418 YRWRQFLHPEDAERALTLRQQSLATGELFENEQRLRDGQTGRYRWFLARALPVRDEAGQI 477 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYK 355 ++ +E + E V+ I F+ + N ++L +T Y Sbjct: 478 DKWFGTCTDIDDQKRMEEALRESQERVNILMNSSIIGIFLAEEEQIVDVNDTYLRMTGYT 537 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 D + L+ + ++ + T + + + Sbjct: 538 REDLQAGNINWMRMTPPKYLARTQQARQELVVQQYGTPYEKE----YVCKDGSLLPVVVG 593 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + + G ++ ++++E Sbjct: 594 VVALRRD----PLHTIGFVLDNS----ARKELEQRKDDF 624 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 28/382 (7%), Positives = 88/382 (23%), Gaps = 17/382 (4%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114 TD + + + +SE + + W G + ++ ++ Sbjct: 358 TDIDDQKRAEQRIKESEENWRVLAETVP-QLVWTTRPDGRVDYCNQRYCDLTQADFEQLR 416 Query: 115 GMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173 R + + L + + L + T Y ALP+ Sbjct: 417 DYRWRQFLHPEDAERALTLRQQSLATGELFENEQRLRDGQ-TGRYRWFLARALPVRDEAG 475 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SP 230 + + FG + ++ + L + +E+ + Sbjct: 476 QID--KWFGTCTDIDDQKRMEEALRESQERVNILMNSSIIGIFLAEEEQIVDVNDTYLRM 533 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQY 288 + R + ++ L + L ++ P ++++ + + Sbjct: 534 TGYTREDLQAGNINWMRMTPPKYLARTQQARQELVVQQYGTPYEKEYVCKDGSLLPVVVG 593 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L+ + + S ++ ++ + Sbjct: 594 VVALRRD---PLHTIGFVLDNSARKELEQRKDDFISMASHELRNPLAALKMQIQLVRKRL 650 Query: 349 LLLTKYKSVDDIEIAGG----LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + +++ + G L L+ + + A + Sbjct: 651 ERQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTM 710 Query: 405 WNRENSLAMTFIPFEKANQFPE 426 + + + Sbjct: 711 QQLSTTHTIVVRGAAPRVLVGD 732 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 7/134 (5%) Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E D + +++ I+ N + + G E++ R F + + + + + + Sbjct: 16 ETLPDALFVVDDTETIVYANASAQAITGTTPEELRRNSFWRCVPRLVSTPLYQAVQKAKQ 75 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 +E ++ + L + + +L + E ++ LS +++ Sbjct: 76 TREPTEVEYVSPVTN---TWLHVSLSPT----DEGLALLFQENLEPPHFQDALSRNEQMY 128 Query: 579 EKESSHKSDFLARV 592 SD + V Sbjct: 129 RDLLESFSDGVTIV 142 >gi|270307577|ref|YP_003329635.1| sensor histidine kinase [Dehalococcoides sp. VS] gi|270153469|gb|ACZ61307.1| sensor histidine kinase [Dehalococcoides sp. VS] Length = 1062 Score = 338 bits (867), Expect = 3e-90, Method: Composition-based stats. Identities = 111/755 (14%), Positives = 258/755 (34%), Gaps = 64/755 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLL---KRQNTWY 144 ++ + +I++ + +G ++G + + + K + Sbjct: 326 LNEDETVAQINKRGCQILGYEYQDILGQNWFENFIPGYRRLIKRSMYKQIISGKTELPER 385 Query: 145 GKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G + + + I S+N + S G + ++K Sbjct: 386 YMDVVLTKDGQEKVILW---HSTAIRSKNGQMSSILYSG--EDVTELKHTEEALRMSEEK 440 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYA------HKDDVLK 255 + L E + K I + R ++++ + ++ Sbjct: 441 YHTLFETMAQGAIYVDNKGIIIETNPAANTIFGRHESELLGVNIADPIWTYVHEDGSIMP 500 Query: 256 TEKYPLLTSEESSLPEQEDF----HTINLNQYTKKQYFGTL-----QNNSKESFEYLSHR 306 + P++ + ++ + F + ++ + L +N+ + Sbjct: 501 PGENPVIAALKTGKAIRNVFMGIKNNLSGEIRWVNLFALPLFRINQENSYMVYTTFTDIS 560 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + EN + + +G + N + Y + + Sbjct: 561 RLKNARDALTRSENRYRSIFETAASIIISFDRNGIINDCNMRIQEILGYTPAEML-GTNF 619 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + D L R D I + + + + ++ Sbjct: 620 LD--IIHESFRDEVRNHIASLNRGD---IIYNKDCRMLHKDG-QYRDVMVNCSTLLDEHG 673 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + I + + + + ++ S+ ++GIA+++ G + N+ + K+ Sbjct: 674 SVLNAICIISDMTEQKQTHYALIASEEKIRSMFNGVNEGIAVMDTSGYVTEINQTMLKMN 733 Query: 486 GY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 + ++ + F+ + Y+ + SL+ + LE L E + Sbjct: 734 NCTSKDQLIGRHALEFVSLKDRDMARSYMNQADSLNEIRNLELRCLRPDGTEYFSQISGA 793 Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E KQ + +L ++A + + ++HEI PLT Sbjct: 794 VLRGYAGEIKGIIILSVDITERKQIEQQLIMTDRMA-----SVGELASGLAHEINNPLTG 848 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+GFSE+ E I R ++V +LL ++ + + Sbjct: 849 IVGFSEL----LLMNELEESIKEDVQTIHREALRAAEVVRNLLTFAR----QQPPTRKAG 900 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IH 717 ++ ++ + + L + I T ++PR++ D ++Q+ +NI+ NA + Sbjct: 901 DINLSIHKVLELRKHDHRINNIRCITELDPDLPRVMLDFFQIQQVLINIIINAEFFLRLK 960 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 QIII T+ N+ VI+ + D G G++ +++ PF G+GTGLG Sbjct: 961 ---EHPQIIIKTS-QHNKHVIISISDNGPGISPENIKRIFDPFFTTK----EVGKGTGLG 1012 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L + +++ + G+ + STP GT I P+ D Sbjct: 1013 LSICHGIIEEHNGRISVESTPRNGTTFRIELPVAD 1047 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 18/159 (11%), Positives = 55/159 (34%), Gaps = 5/159 (3%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + +++ E + L+ I ++N + + N+ ++ GY +DIL Sbjct: 292 IRRRRELARTEIRLKEERDKAQLYLDIAGVIIVVLNEDETVAQINKRGCQILGYEYQDIL 351 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550 + + ++ + + + + E+ + L +EK++ + Sbjct: 352 GQNWFENFIPGYRRLIKRSMYKQIISGKTELPERYMDVVLTKDGQEKVILWHSTAIRSKN 411 Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + D++E K + L +++ + Sbjct: 412 GQMSSILYSGEDVTELKHTEEALRMSEEKYHTLFETMAQ 450 >gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC 7002] Length = 1019 Score = 338 bits (867), Expect = 3e-90, Method: Composition-based stats. Identities = 119/695 (17%), Positives = 222/695 (31%), Gaps = 59/695 (8%) Query: 156 NLYVPIDLAALPIYSRNREFSGF-------RGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 N +P+ IY F G + F ++R N L ++ + Sbjct: 184 NQDLPVYGVLAYIYDEQNNFIGAAYLEKDPQNFLYSLLDRAANASTTAETLLVRREGNNI 243 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + L + + S + T++ Sbjct: 244 RYLNPLRFASDPPLRLSRSLDQDSLLATQAILQSRRLVRGTDYRDILVVGASFETTQAPW 303 Query: 269 LPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR------------NHPSLSAYF 315 + + N L ++ ++ + Sbjct: 304 IVIYKVNLREANAPFRQLAIAISGLSGLLIGVVFWVGYQMLRLQRFKLEAIAREAEIEKA 363 Query: 316 DEGENLTPETVDKCPIPF----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + G N + +T Y D++ L+ Sbjct: 364 QIRAASASRYLTAIETAIDGYAVLDDRGYFLEVNVALGEMTGY-DCDELLQRSIFDLLIT 422 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + R QW + + + Sbjct: 423 DNLDPAQLLTEWGDRRRLK----------LYQQWRHKKGQIREMQLSLTTDLSEDQSRFF 472 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + +L ++ I + +G IL NR + L GY + + Sbjct: 473 IFVQDITQQKQANAALGESEQRLYRAIQDAPFPILLYASDGEILQLNRTWTVLTGYDITE 532 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 I + + L I + E L E+++ Sbjct: 533 IP--TIAAWAAKAYGEAYLTALQGIEKVYEIQNSTHDGEYAILTKDGEKRIWDFSSAPLG 590 Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 D+++ K ++ L AKK AE+ + KS FLA +SHE+RTPL I+G Sbjct: 591 TLPDGRKLQITMAMDVTDRKADELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILG 650 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +++++ F + + I++ G +L ++ D+LD SKIE+ ++ L V Sbjct: 651 YAQILM---FDESLSAEQKSSLSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFH 707 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + I Q+ A EK++L+ +IP +L D + ++Q+ LN+L NAI FT G Sbjct: 708 YFILDIIQTCQIKATEKQLLLNYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSV 767 Query: 725 II-ISTTHTSN----------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 ++ + + V VRDTG G+ +K PF QI + + G Sbjct: 768 VLDVQLSQPPQTPPKSPKHHWHRVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRSRPH-G 826 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 TGLGL +++ +V G+ + S P KG+ Sbjct: 827 TGLGLAISQKLVAMMGGELQLTSYPNKGSCFSFDL 861 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 60/244 (24%), Gaps = 15/244 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D GY E++ L + G +++ + D+ ++DP LL Sbjct: 387 LDDRGYFLEVNVALGEMTGYDCDELLQRSIFDLLITDNLDP----AQLLTEWGDRRRLKL 442 Query: 149 L---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +G + + L ++R F V A +++ Sbjct: 443 YQQWRHKKGQIREMQLSLTTDLSEDQSRFFI------FVQDITQQKQANAALGESEQRLY 496 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + +I + + A E Y Sbjct: 497 RAIQDAPFPILLYASDGEILQLNR--TWTVLTGYDITEIPTIAAWAAKAYGEAYLTALQG 554 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + E ++ K + + S L ++ D + E Sbjct: 555 IEKVYEIQNSTHDGEYAILTKDGEKRIWDFSSAPLGTLPDGRKLQITMAMDVTDRKADEL 614 Query: 326 VDKC 329 + Sbjct: 615 ALQA 618 >gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 775 Score = 338 bits (867), Expect = 3e-90, Method: Composition-based stats. Identities = 136/650 (20%), Positives = 250/650 (38%), Gaps = 52/650 (8%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 D++ I+ + I + QSP V+ + + Sbjct: 128 ADQRVLARVPIEAAPGESSRILELISTAQSPALRGMSSASVADIILLDGSGALATQRVVR 187 Query: 260 PLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 LL + T G + +F + S R D Sbjct: 188 SLLGHVTVIQEKTDSVWRPDTALSITLSATTGFVVLILGFAFHWQSTRAREG-DVINDAV 246 Query: 319 ENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 +++ + + G + + + S + +S D+ G +S L + + Sbjct: 247 RGRIDTALNRGRCGLWDWDLSRGRI-FWSQSMFTMLGLESRSDLLTFGEISALANPDDID 305 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ I + ++ + + + + GI + Sbjct: 306 LFAIGDQLIS-----GKIHHIDQSFRMRHSGGHWIWLRVRCELSQGAGDGAAHLIGIAVD 360 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + K ++L +E + + + + ++ N +L P + Sbjct: 361 ITEQKSLAEKTVEADLRLRDAIETIPEAFVLWDADDRLVLCNSHFQRLHKLPESAVAAGT 420 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + M+ + L++ ++ Y Sbjct: 421 SYETVIEVGR--MHEICARPPETGTTAPGARTFEAQLDNGCWLNIS---ERRTKDGGYVS 475 Query: 557 TMHDISEWKQEKNKLSHA-----------------------------------KKIAEKE 581 DI+ K+ + KL K AE Sbjct: 476 VGTDITRIKEHEQKLVDNDLRLRATVIDLKRTQATLEQQAIELADLAQKYAKEKDRAEDA 535 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS FLA +SHE+RTPL AIIGFSE++ N FG LG+ +Y EY + I SG +L+++ Sbjct: 536 NRAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVI 595 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 ND+LD+SKIE+G+M L EP+ L ++E++ +V ++K++ ++I I AD Sbjct: 596 NDVLDMSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADH 654 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R+VKQI +N+LSNA+ FTP GG+++ + +N V L + DTG+G+ + L K KPF Sbjct: 655 RAVKQIIVNLLSNAVKFTPDGGRVMARSQVFAN-SVALTIADTGIGIAPHSLRKLGKPFE 713 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 Q+ + G+GLGL +AK++V+ + G + S P GT++ + P + Sbjct: 714 QVESQLTKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTLPRH 763 >gi|168702165|ref|ZP_02734442.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 881 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 109/714 (15%), Positives = 231/714 (32%), Gaps = 59/714 (8%) Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFR 179 ++ D + +R I + I L A + R Sbjct: 58 WNLPQFDALRALEVARERVPEVPFIIVSGSIGEEHAVRAIKLGASDYLLKDRLGRLGPAV 117 Query: 180 GFGIVH--VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRM 236 +V + + R + ++++ L + + I ++ + + Sbjct: 118 KQALVQRDLRDAERRARDELRASEERYRVLADSVPQIVWTARPDGSIDYTNRRATEYAGT 177 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQN 294 +++ + D L + P + +F + L++ Sbjct: 178 NGRLTDWSWERLVHPDDLPHTMATWGAVLRTGEPHEFEFRLRRSDGAFRWHLARQVALRS 237 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353 + E + + V G + Y N L Sbjct: 238 PDGAVERWFGTCTDIHDQKTTAELLAQDAQVLAHVRDSVVVTDPDGVVTYWNAGATRLFG 297 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + I S A + + + R+D T + + Sbjct: 298 WTAQEMIGRRY--SDRFPAEFRPELSRE---VRARADGTEWHGEYE---DLRKDGTRVWV 349 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + G+ + D + + L +++ + +D I I+ G Sbjct: 350 HARVGPIRDAAGRVCGVLGLASDLTDRKRAE-------ESLAAVMRSVADAIVTIDERGT 402 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531 I+S N A +LF Y ++++ + V + + + YL + + + + G Sbjct: 403 IVSVNPATERLFNYTADELVGRNVRVLVSEPPRGRHDSYLEDHFGTGVSSLIGVGREVEG 462 Query: 532 STKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ L + ++ + ++ + D++E K+ + + A+K+ Sbjct: 463 RRKDGTTFPADLSVTEFRIEDARHFTGVVRDVTERKRLEAQFRQAQKM-----EAVGRLA 517 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 V+H+ LT I G+++++ + +G + + LL S+ Sbjct: 518 GGVAHDFNNLLTVINGYTDLLLGGPLAEND----RAALAAVRDAGERAAGLTSQLLAFSR 573 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 K + + + L E V++A L++ + + + + I ADL + Q+ + Sbjct: 574 ----KAIVAPQVLDLKEVVAQAERLLRRLI-GEDVALTVTSHAGPCWIEADLNQLDQVIM 628 Query: 710 NILSNAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEK 755 N+ NA P+GG++ T + V L VRDTG GM+N + Sbjct: 629 NLAVNARDAMPTGGRLTFETRRIPVAPGSSTDSGELRAGWYVSLAVRDTGCGMSNEVKAR 688 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF G+GTGLGL + +V G + S P GT I+FP Sbjct: 689 LFEPFFTTKGP----GKGTGLGLAVVHGIVKQAGGHIWAESAPGAGTTFHILFP 738 Score = 95.9 bits (237), Expect = 3e-17, Method: Composition-based stats. Identities = 34/393 (8%), Positives = 89/393 (22%), Gaps = 32/393 (8%) Query: 58 NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117 + E + SE + + W G + + + G ++ Sbjct: 128 DAERRARDELRASEERYRVLADSVP-QIVWTARPDGSIDYTNRRATEYAG-TNGRLTDWS 185 Query: 118 LCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 + + +L+ + L +G + + + S + Sbjct: 186 WERLVHPDDLPHTMATWGAVLRTGEPHEFEFRLRRSDG--AFRWHLARQVALRSPDGAVE 243 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236 R FG L L + L ++ + + + Sbjct: 244 --RWFGTCTDIHDQKTTAEL---LAQDAQVLAHVRDSVVVTDPDGVVTYWNAGATRLFGW 298 Query: 237 KNKV---SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + ++ + + + + E ED + + G ++ Sbjct: 299 TAQEMIGRRYSDRFPAEFRPELSREVRARADGTEWHGEYEDLRK-DGTRVWVHARVGPIR 357 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352 + + L + + +E + + G + NP+ L Sbjct: 358 DAAGRVCGVLGLASDLTDRKRAEES---LAAVMRSVADAIVTIDERGTIVSVNPATERLF 414 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASA 398 Y + + + + D+ + V R D T A Sbjct: 415 NYTADELVGRNVRVLVSEPPRGRHDSYLEDHFGTGVSSLIGVGREVEGRRKDGTTFPADL 474 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + Q Sbjct: 475 SVTEFRIEDARHFTGVVRDVTERKRLEAQFRQA 507 >gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 775 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 106/425 (24%), Positives = 199/425 (46%), Gaps = 18/425 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G +++ N ++ GY ++I+ + F+VF + Sbjct: 275 IEGVKDYGIFALDRNGYVITWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I S +S DIS+ + + L Sbjct: 333 HEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDQLRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF+++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMD-----SPASQRPQVGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI--RTSF 690 +G +L ++N++LDI++IE+G ++L EPV L + EA+ LV A + I + Sbjct: 448 AGQHLLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMAADGNIELPALPQL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V D+G G+ Sbjct: 508 PDELG-VVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAE-RVAVSVVDSGHGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ KPF ++ EGTGLGL L+K+M++ G + S P +G+ + P+ Sbjct: 566 ELIDQLFKPFERLNADPS--VEGTGLGLALSKSMLEMMHGTLSVHSVPGEGSRFTLELPV 623 Query: 811 YDTSH 815 Sbjct: 624 VQVQQ 628 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 23/259 (8%), Positives = 71/259 (27%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVITWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N + GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDQLRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPASQRPQVGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L+ ++ + + E + P Sbjct: 458 EVLDIARIEAGHISLSLEP----VPLSNVLQEALVLVSPMAADGNIELPALPQLPDELGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|283852829|ref|ZP_06370092.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283571821|gb|EFC19818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 674 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 105/541 (19%), Positives = 206/541 (38%), Gaps = 33/541 (6%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLL 350 L + + V PF+V G N +F + Sbjct: 8 LLAAGLSALVTAVGAAALCRRRSRRRDDLFLERVVGTLADPFYVKGPDGRFLLVNDAFCI 67 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 L D + T+ S + ++L A + + + Sbjct: 68 LAGRSRPDILGRNAA--TVFPGRFGSASLKNDAMVLVCG----FEDIAEESAVDADGRHR 121 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470 MT GI + + R + ++ I+E ++GI ++ Sbjct: 122 TFMTRKTLHVDGLGRR--HVVGIIRDITARKEAARALAQSEVRYRRIVETANEGIWAVDA 179 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 N ++ + G ++ + + FL + L + E+ Sbjct: 180 RWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPEDRELHRAMLRREVLPPGGGVYER--R 237 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLS-------HAKKIAE 579 ++ + + I + +S +I++ KQ + L AK+ AE Sbjct: 238 LKRQDGREIWTIIAVSSEFDASGRFLGSVGMFTNITDRKQAEEALRLSEARLAAAKEAAE 297 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS+FLA +SHEIRTPL ++G +++++ + + G + Sbjct: 298 AANKSKSEFLANMSHEIRTPLNGLLGMLQIVEDTAL----DGDQRDCVVTALDCGRRLTR 353 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698 ++ D+LD+S++ESGK+ L +P SL E + ++ + +++ + + T+ ++P +L Sbjct: 354 LLTDILDLSRVESGKLVLVADPFSLREVFASIQTVFAVTLDQRGLALETAIHPDVPALLL 413 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753 D ++QI LN++ NA+ FT SG I + +E + L V DTG+G+ + + Sbjct: 414 GDEGRIRQILLNLVGNAVKFTRSG-TITLEAGWHPADETGGRRLALAVGDTGIGIPHDKH 472 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + + F Q+ S +G GLGL + +V G + S P GT++ + PL Sbjct: 473 DTVFETFTQVDASNTRIHQGAGLGLSIVDRLVRLMGGTVLLDSEPGIGTMVMCLLPLAPA 532 Query: 814 S 814 + Sbjct: 533 A 533 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 23/263 (8%), Positives = 68/263 (25%), Gaps = 20/263 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144 W +DA ++ + +G A MIG + + + + R+ Sbjct: 174 IWAVDARWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPE----DRELHRAMLRREVLPP 229 Query: 145 ----GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + L +G ++ I +++ + + F G G+ + Sbjct: 230 GGGVYERRLKRQDGREIWTIIAVSSE--FDASGRFLG--SVGMFTNITDRKQAEEALRLS 285 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + E + + + E S + P + + + + D Sbjct: 286 EARLAAAKEAAEAANKSKSEFLANMSHEIRTPLNGLLGMLQIVEDTALDGDQR------- 338 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ ++ + + S + + D+ Sbjct: 339 DCVVTALDCGRRLTRLLTDILDLSRVESGKLVLVADPFSLREVFASIQTVFAVTLDQRGL 398 Query: 321 LTPETVDKCPIPFFVYSHGNLFY 343 + + G + Sbjct: 399 ALETAIHPDVPALLLGDEGRIRQ 421 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 13/238 (5%), Positives = 47/238 (19%), Gaps = 10/238 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148 G +++ G ++G V + +L + Sbjct: 53 GPDGRFLLVNDAFCILAGRSRPDILGRNAATVFPGRFGSASLKNDAMVLVCG--FEDIAE 110 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 ++ + GI+ + + + ++ + Sbjct: 111 ESAVDADGRHRTFMTRKTLHVDGLGR---RHVVGIIRDITARKEAARALAQSEVRYRRIV 167 Query: 209 EIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTS 264 E ++ + + + +D L Sbjct: 168 ETANEGIWAVDARWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPEDRELHRAMLRREVL 227 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + + S + + + +E L+ Sbjct: 228 PPGGGVYERRLKRQDGREIWTIIAVSSEFDASGRFLGSVGMFTNITDRKQAEEALRLS 285 >gi|221210474|ref|ZP_03583454.1| PAS domain protein [Burkholderia multivorans CGD1] gi|221169430|gb|EEE01897.1| PAS domain protein [Burkholderia multivorans CGD1] Length = 1380 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 130/793 (16%), Positives = 279/793 (35%), Gaps = 71/793 (8%) Query: 36 TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV-FDPIPRTVRFTWN------ 88 T ++K C + + ++ + T + F R Sbjct: 501 THRAKTPTGCPPLLHVESGSADDRPVPTPTLRAPASPVQRNFSYAELHQRALEMYSPPSV 560 Query: 89 -IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID + +S+ + + + ++ + V L +D I L+ + + Sbjct: 561 IIDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARR 620 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W + I++ P + + + L D+ + Sbjct: 621 VKWTHD--TQVSWINMTVRPFHDK------------------VANADFLLVVFDEVAGRM 660 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + ++ + P ++++++ E A + +T L S E Sbjct: 661 TDEDQAEANGQD-----------PVLAQLEHELQHSREQLATIIEQYETSVEELKASNEE 709 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E+ + + + K+ ++ + + R + A D + + Sbjct: 710 LQAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI- 768 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 FV + P+ + D ++ L P L+D+ L Sbjct: 769 ---ATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLR 825 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 +R I+ + +P+ A+ + D + Sbjct: 826 LIERE----------IESEAGRWYLIRLLPYRTAD--DHIDGAVITLIDVTDRHHAEEAA 873 Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 +L + ++T D I I + GII S N ++FGY ++++ + + E N Sbjct: 874 RAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDR 933 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEW 564 ++ + + TK+ + + + + ++ + D+++ Sbjct: 934 HARVPAHEREVAAREGRA-DDERWHRTKDGRRIFCSGVVTPIADTSFNGFAKIVRDLTQR 992 Query: 565 KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 K ++ A ++ A + K +F+A +SHE+R PL I +E + + Sbjct: 993 KLSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAE-MLPRLPET 1051 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 P E A I ++ I++DLLD+S+I +GK+ L V L + + + Sbjct: 1052 RDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEA 1111 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A+ + +++ ++ LAD +QI N++SNA+ FT +GG+I++ TH + + Sbjct: 1112 DAHARGLVLTAELPDDPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEAR-ML 1170 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796 + V D G G+ L F Q P + G G+GL L + +V+ + G+ S Sbjct: 1171 RVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHDGRISAASD 1228 Query: 797 TPAKGTLIEIIFP 809 P +GT + + P Sbjct: 1229 GPGRGTTMTVWLP 1241 >gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 498 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 93/404 (23%), Positives = 168/404 (41%), Gaps = 19/404 (4%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + + + E+ G+ + G I+ N + +L Sbjct: 94 HYTRLAAAVRAAWERSKQHQAFKEMQQRYQQLFESVPIGLYRMTPTGQIIEANPTLLQLL 153 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GYP L + ++ + L + + ++ +R Sbjct: 154 GYPSVQAL---LDTNISKHLVDTQANRLWQSQIDGEGVVRNLEIPMRRCDNTMIWVRYNA 210 Query: 546 KKLPFSSCYS----LTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSH 594 + + S + D+++ KQ + + + A+ AE + K +FLA +SH Sbjct: 211 RAIRNSQGEVMYYEGAIEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFLATLSH 270 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AI+G++ +++ ++ P + I+R+ +++DLLD+S+I G Sbjct: 271 ELRTPLNAILGWAGLLRRKQLSP---DKVQRALEVIERNAKSQAQLIDDLLDVSRIIRGN 327 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + L PV L + ++ AI +Q A+ K I I + + I D ++QI N+LSN Sbjct: 328 LRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWNLLSN 387 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI FTP+ GQ+ I N V +RV+DTG G++ F Q S G Sbjct: 388 AIKFTPTHGQVKIYLEWLENA-VQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSHGGL 446 Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPH 817 GLGL + + +V+ + G + S KG + PL + Sbjct: 447 GLGLAIVRHLVELHGGTVWCESDGDGKGATFIVELPLKPQADAE 490 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 22/255 (8%), Positives = 67/255 (26%), Gaps = 11/255 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + + G + E + L + +G + ++ + ++ N + + Sbjct: 133 LYRMTPTGQIIEANPTLLQLLGYPSVQALLDTNISK--HLVDTQANRLWQSQIDGEGVVR 190 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 N + + A I + E + G + +L K Sbjct: 191 NLEIPMRRC-DNTMIWVRYNARAIRNSQGEVMYYEG--AIEDVTQRKQAETERTQLLKSE 247 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---DVLKTEKYPL 261 + + ++ E S + P + L D L+ + Sbjct: 248 QAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGLLRRKQLSPDKVQRALEVIERNA 307 Query: 262 LTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + I N + N + ++ + + + ++ + + Sbjct: 308 KSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFLEPSQ 367 Query: 320 NLTPETVDKCPIPFF 334 + D+ + Sbjct: 368 TVIKGDSDRLQQIVW 382 >gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 612 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 119/393 (30%), Positives = 189/393 (48%), Gaps = 17/393 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + + E + + SD I+ R G +L + A L G PV +L Sbjct: 192 RTSVALLYDEEDRYRLLARNMSDVISRHARNGAVLFVSPAAEPLLGVPVSRLLGHGLFDR 251 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK--------LLSLRIIIKKLP--- 549 + L++ +++E + L + + L Sbjct: 252 VHVADRPAFLTALSDAGRGGEARSVEFRIRRDVPRGDRGRCNTADFIWLEMRCRPLEPSA 311 Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + M D+++ K+++ L A+ AE+ + +S FLA +SHE+RTPL AIIG Sbjct: 312 KNATSEAEVVAVMRDVTDRKEQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIG 371 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE+I + + R EYA I+ SG +L +VN +LD+SK+ESGK + EP + Sbjct: 372 FSEMIVQEDVLMISAARRKEYAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPR 431 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 A+ +L+ L A E + + T N+P++ D R+ KQI LN++SNAI FT GG + Sbjct: 432 PALLNCCNLLALKARENEVDLVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTV 491 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S + LRV DTGVG+ +L++ + F Q S R EGTGLGL + K++V Sbjct: 492 TVSAAVE-GARLALRVSDTGVGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLV 550 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + G+ + S +GT + ++ PL T P D Sbjct: 551 ALHGGEMSVESKLDEGTTVTVMLPLAFT-RPQD 582 >gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 796 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 91/512 (17%), Positives = 188/512 (36%), Gaps = 23/512 (4%) Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + + P ++ G + + N + T S+D++ G + Sbjct: 13 DADYRNLAETLPQLAWIAEADGTIIWYNQRWYDYTG-TSLDEMRGWGWRT---VHHPDHV 68 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + ++ + ++ + G + Sbjct: 69 AAVTERYRAAITLGRSWE---DTFPLRGRDGSYRWFLSKALPHRDESGRILRWYGTNTDI 125 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 R + ++ + ++++A++ I + G ++ S G E + Sbjct: 126 TGRRAVEERLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVRWSTYTGQTEEAYQGWGW 185 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 + + + T E + ++ + + Sbjct: 186 LDAVHPDDRGHAADAWAACVEARA--TYEVEYRLRRYDGVWRAMEVRGVPVLAEDGSLRE 243 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + T D++E K+ + + A++ AE + KS F+A +SHE+RTPL+A+IG+SE + + Sbjct: 244 WVGTCVDVTERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVIGYSE-MLGE 302 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 +G + I+ + +L ++ND+LDISKIE+G+M E ++ + + + Sbjct: 303 ELEDIGQAALLPDLRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVSDLLRDVSD 362 Query: 674 LVQLYANEKRILIRTSF----ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728 +K ++ + D ++Q LN++ NA FT G + + Sbjct: 363 STGSLVEKKGNRFVLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTERGTITLTVR 422 Query: 729 TTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + V DTG+G+T ++ + + F Q +S + GTGLGL + +A Sbjct: 423 RHREEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGLAITRAFCRT 482 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + STP G I P T P D Sbjct: 483 MGGDIGVASTPGAGATFTIRLPA--TLRPEDA 512 Score = 86.6 bits (213), Expect = 2e-14, Method: Composition-based stats. Identities = 27/262 (10%), Positives = 64/262 (24%), Gaps = 14/262 (5%) Query: 67 YLDSENTFVFDPIPRTV-----RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121 +S V D R + + W +A G + ++ G +M G V Sbjct: 3 ETESGPGSVTDADYRNLAETLPQLAWIAEADGTIIWYNQRWYDYTGTSLDEMRGWGWRTV 62 Query: 122 SDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180 H+ + +W L +G+ Y ALP + R Sbjct: 63 HHPDHVAAVTERYRAAITLGRSWEDTFPLRGRDGS--YRWFLSKALPHRDESGRI--LRW 118 Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRM 236 +G + +++F L + ++ Q + Sbjct: 119 YGTNTDITGRRAVEERLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVRWSTYTGQTEE 178 Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + + D + + ++ + + + + Sbjct: 179 AYQGWGWLDAVHPDDRGHAADAWAACVEARATYEVEYRLRRYDGVWRAMEVRGVPVLAED 238 Query: 297 KESFEYLSHRNHPSLSAYFDEG 318 E++ + +E Sbjct: 239 GSLREWVGTCVDVTERKEAEEA 260 >gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum aromaticum EbN1] gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase and response regulator domains [Aromatoleum aromaticum EbN1] Length = 1015 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 132/678 (19%), Positives = 224/678 (33%), Gaps = 58/678 (8%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 +R+ R L + H P + S L Sbjct: 180 DSRLVAISRLLAVAVGGVALVAVVGLTFHFVRLNLAIPSVGIALPVALALLITSFSLLLR 239 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + L P LP + Q FG E ++ Sbjct: 240 NPPPRFIQLLEHDSPGAVIFRRLLPVAIAVPLLAGWLQALGQRFGWFGVIEGEGVVAVAM 299 Query: 306 -------------------RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345 + + + T+ V + + + N Sbjct: 300 IVACTVLILWTAARLDEMNTDRSIAEIRANTQQQWLEVTLATIEDAVITVNNEMRVGFLN 359 Query: 346 PSFLLLTKYKSVDDIEIA---------GGLSTLLDAPKLSDNNAIKPVM------LYRSD 390 P+ L K D I + +P + + V L D Sbjct: 360 PAAETLLDVKVGDAIGRDLQELVVLVDEATDQPMGSPFARAFSELGQVTISGEPGLRMRD 419 Query: 391 RTCIAASARLHTIQ-WNRE---NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + A A I+ W L + +A + + ++ D + Sbjct: 420 GSVRAVEATATPIRDWKGGINGGVLVLRDARAHRAREHADRQAYAALDRRVGDRTRALER 479 Query: 447 ----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501 + L +I +T + I +REG I+ N A + G ++ Sbjct: 480 TMSVLRESTTLLRTIAASTPELIVAKSREGRIMMVNPAALQAMGLSRAQVVGHKEESLFG 539 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559 + ++ +E + + + + + Sbjct: 540 SSEEMRRILENDRRVIETRRPIVVE-ESRTTRAGTRTFLVTKSPLRDSQGHVFGLVGVSK 598 Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 DI+E K+ + +L + AE+ + K +FLA VSHE+R+PL A+ G+S+V+ Sbjct: 599 DITERKRAQRELEQLLVAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVL-- 656 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G + A I R+ + +++DLLD S+I SGK+ L+ V+L E V AI Sbjct: 657 TASGNPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAI 716 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L A KRI +R A I D ++QI +N+L+NA+ FTP GG + + Sbjct: 717 DLSWDTAKAKRIELRVDTACPSLMINGDHDRLQQIVINLLANALKFTPEGGWVELRLA-Q 775 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 VIL V D+GVG+ L F Q S R +G G+GL L + +V+ + G Sbjct: 776 GETSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQGLGIGLALVRNLVELHGGAV 835 Query: 793 YIFST-PAKGTLIEIIFP 809 + S P G++ + P Sbjct: 836 RVESAGPGCGSVFTVELP 853 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 46/398 (11%), Positives = 101/398 (25%), Gaps = 53/398 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------QNT 142 ++ + ++ + IG L ++ ++ + +G R Q T Sbjct: 349 VNNEMRVGFLNPAAETLLDVKVGDAIGRDLQELVVLVDEATDQPMGSPFARAFSELGQVT 408 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----ALGK 198 G+ L +G+ ++ A PI +G G ++ R Sbjct: 409 ISGEPGLRMRDGS--VRAVEATATPIRDWKGGING--GVLVLRDARAHRAREHADRQAYA 464 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------------------------PPHL 234 LD++ + SV +E + + L Sbjct: 465 ALDRRVGDRTRALERTMSVLRESTTLLRTIAASTPELIVAKSREGRIMMVNPAALQAMGL 524 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQ 293 V E + ++ E+ P E+ T T L+ Sbjct: 525 SRAQVVGHKEESLFGSSEEMRRILENDRRVIETRRPIVVEESRTTRAGTRTFLVTKSPLR 584 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS---FLL 350 ++ F + + + G AN + FL Sbjct: 585 DSQGHVFGLVGVSKDITERKRAQRELEQLLVAEHRL--------RGEAERANRAKDEFLA 636 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + ++ + G S +L A + + + I ARL + Sbjct: 637 IVSHELRSPLNALKGWSQVLTASGNP--EPATVLRAAEAIKRNIDHQARLIDDLLDTSRI 694 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++ + E + D + + ++ Sbjct: 695 ISGKLELNSRRVNLVEIVHAAIDLSWDTA-KAKRIELR 731 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 29/255 (11%), Positives = 72/255 (28%), Gaps = 13/255 (5%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTT 148 G + ++ + +G +++G + + S + +++ + + + Sbjct: 507 REGRIMMVNPAALQAMGLSRAQVVGHKEESLFGSSEEMRRILENDRRVIETRRPIVVEES 566 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 GT ++ + P+ FG+V V++ + + + L++ H Sbjct: 567 RTTRAGTRTFL---VTKSPLRDSQGHV-----FGLVGVSKDITERKRAQRELEQLLVAEH 618 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ + K + + S + L +E Sbjct: 619 RLRGEAERANRAKDEFLAIVSHELRSPLNALKG---WSQVLTASGNPEPATVLRAAEAIK 675 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 I+ T + G L+ NS+ LS + + + Sbjct: 676 RNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAIDLSWDTAKAKRIELRVDTA 735 Query: 329 CPIPFFVYSHGNLFY 343 CP H L Sbjct: 736 CPSLMINGDHDRLQQ 750 >gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 797 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 114/454 (25%), Positives = 200/454 (44%), Gaps = 52/454 (11%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 ++ F + + E + + + + I E+ GI ++ Sbjct: 191 IFSLVLHTFRIRTFSRMSELRICDEMRAEKLKEAVSQSQENENKFRRISESVPFGIFQVD 250 Query: 470 REGIILSTN---RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +G +N R+ G + + L + + ++ T Sbjct: 251 TDGFCGYSNNIYRSFCMSAGVTRIE---HRWVEILPADVREQTQQQWAQAVADFTSFTGV 307 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK------------------ 568 +T + E++ L + I + + T+ DI+E K Sbjct: 308 YLTQTVSGEQRWLEILISPVFSDDGAVFVGTIEDITEKKLAHDQLGKTADDLRISKEQLE 367 Query: 569 ----------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +L AK+ AE+ + KS+FLA +SHEIRTP+TAI+G+++V+ ++ Sbjct: 368 KNSRRLQDVVEQLEVAKERAEQSARSKSEFLANMSHEIRTPMTAILGYTDVLLHEV---A 424 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 NP + + I R+G +L I+ND+LDISKIE+GKM + P S + +++ +L+ + Sbjct: 425 DNPHFQDSLTTIKRNGEHLLQIINDILDISKIEAGKMEVEIIPTSPTQLIADVYTLMAVR 484 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733 A EK + + FA+ +P I D ++QI LN++SNAI FT GG + I Sbjct: 485 AQEKDVELSYEFASRLPHTIQTDPTRLRQILLNLVSNAIKFTDKGG-VRIRAAIEQGLPG 543 Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + + + V+D+G+GM++ + K +PF Q S R GTGLGL +++ + GK Sbjct: 544 QTDPRLAIYVQDSGIGMSDEQKAKLFQPFTQADTSMSRRFGGTGLGLTISQRLAQKLGGK 603 Query: 792 FYIFSTPAKGTLIEIIF------PLYDTSHPHDC 819 + S P KG+ + P+ D HP +C Sbjct: 604 ISVESMPGKGSTFCVSIATQVVCPI-DGGHPCNC 636 >gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri] Length = 943 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 102/381 (26%), Positives = 180/381 (47%), Gaps = 13/381 (3%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L + E D I I++++ + N++ S L G +EDI K Sbjct: 264 KRELIRSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L+ + T + SL ++ + K+ L + + + + + Y + Sbjct: 324 LQ-LDKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 DI++ K+ ++KL A A+ + KS FLA +SHE+RTPL I+G +++I++ Sbjct: 383 VERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + + + SG+ +L ++ND+LD SKIE K+ L+ ++ + + Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYL 498 Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734 +K + + N I L D ++QI N++SNA+ FT G + S T T Sbjct: 499 SICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHKGSITLNFSHTLTPK 558 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E V ++V+DTG+G+ L+ +PF Q S + GTGLGL + K + D G Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLTIVKQLTDTMKGYI 618 Query: 793 YIFSTPAKGTLIEIIFPLYDT 813 + S+ KGT ++ PL T Sbjct: 619 SVNSSEGKGTCFTLVLPLEIT 639 Score = 44.2 bits (103), Expect = 0.081, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143 + +D L I++ GN + G L V + I N L LK + Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKTGTSV 347 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T +GT ID++ PI+ N + + + + K Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELEDKLIKAADK 403 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 ++ K + + Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425 >gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1039 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 111/676 (16%), Positives = 209/676 (30%), Gaps = 28/676 (4%) Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W G N + + A R F F + + G Sbjct: 226 WEELGRRLQRVGANDAILLLSAYKDQRGVVRNFEEGLAFILQNTRSPVYHLWEHGMGKGL 285 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L + I + SP ++ ++ + + + Sbjct: 286 LGGKLISHYEQGRLAADMALKILAGASPASLPVIEGNDANAYLFDYEVLRRHGISTHRIP 345 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + L +++ E Sbjct: 346 QGSRVINEPESIWRDYWRELLVAVAFVAVLCVLVVVLLKHVLRLREARTE--IKRSETRY 403 Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 D+ P+ Y G + N F L I + + + Sbjct: 404 RLVFDQSPLGLVQYDGDGIIIDVNERFAELCGASRGQIIG--------FNYINQMHDARM 455 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 +L + + + + + + GI + D + Sbjct: 456 LGAVLASLRGGIGGFEGVYTSPL--GKKTAFIRCLFKGVKAPAGDVFIGIGIIEDVSDRK 513 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVF 500 + + + L G N L + V+++ P + + Sbjct: 514 QAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSEEVNRILDLPEDYKPGLAEWLTS 573 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--M 558 + L ++L +E + K LR + ++ S + Sbjct: 574 FMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLR-AVGRVDEGSGALVVGTF 632 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D+ E K+ + +L AK A + K +FLA +SHEIRTPL I G ++ + P Sbjct: 633 QDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADASLAP- 691 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 R E A RS + D++ D+LDIS+I++GK+ + P L ++ + L Sbjct: 692 ---RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIPS 748 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----T 732 A + + + IP R++ D ++Q+ N+L NA FT G + + H Sbjct: 749 AMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVLA 807 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 ++ V+ V DTG G+ + + K PF Q + +G GLGL + + ++ G Sbjct: 808 NSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIRVMGGHL 867 Query: 793 YIFSTPAKGTLIEIIF 808 S GT + Sbjct: 868 AFESEAGTGTTVYFTL 883 Score = 58.5 bits (140), Expect = 5e-06, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 92/364 (25%), Gaps = 15/364 (4%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124 T SE + + D G + +++E + G ++IG ++ + Sbjct: 394 TEIKRSETRYRLVFDQSPLGLV-QYDGDGIIIDVNERFAELCGASRGQIIG--FNYINQM 450 Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184 + L+ + P+ ++ + + + F G GI+ Sbjct: 451 HDARMLGAVLASLRGGIGGFEGVYTSPLGKKTAFIRCLFKG--VKAPAGDV--FIGIGII 506 Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + I K + D R+ + Sbjct: 507 EDVSDRKQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSE--EVNRILDLPEDYK 564 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A E P + + + I T+ + + S Sbjct: 565 PGLAEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLRAVGRVDEGS 624 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 DE + E V+ + F AN S + T + Sbjct: 625 GALVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTP------LNGIF 678 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G+ +L L+ M RS R + I L + IPF+ + Sbjct: 679 GMLRMLADASLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSI 738 Query: 425 PENM 428 + Sbjct: 739 RQVR 742 >gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 889 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 174/384 (45%), Gaps = 23/384 (5%) Query: 439 DTRINKRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++ K ++ L S IL + +D +NR+ I N +K+ ED++ Sbjct: 361 ESHREKDELLQREQALRSRLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQDLEPEDLIG 420 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 K + + + L+ ++ + L + + L + Sbjct: 421 KNYWEQWTRTKGTDFEREYRRSLAENIP--VHFEILYELWD---MWLEVHAYPSEDGLGI 475 Query: 555 SLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 +I+E KQ + + + A+ AE+ + K DFLA +SHE+RTPL I+G++ Sbjct: 476 F--FRNITERKQAEQEREYLLMREQIARGEAERANRLKDDFLAVLSHELRTPLNPILGWA 533 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++K + L I+R+ L + ++ DLLD+S+I+ GK++L+ + V+L Sbjct: 534 TLLKKRN---LEEATRRRGIETIERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHT 590 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + EA+ V+L K I I+T+ N+ + D ++QI N+L+NAI FTP GQI + Sbjct: 591 IEEALETVRLAIEAKSIHIKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQV 650 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 N ++++D G G+++ L + F Q + + G GLGL + K + + Sbjct: 651 VLERV-NNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTEL 709 Query: 788 NMGKFYIFST-PAKGTLIEIIFPL 810 + G S G + + PL Sbjct: 710 HGGTVKAESAGEGMGAIFTVNLPL 733 >gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium denitrificans ATCC 51888] Length = 836 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 116/639 (18%), Positives = 246/639 (38%), Gaps = 21/639 (3%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 D A R + L + + + + E Sbjct: 201 EIARIEDQHATLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQAVDAKSEIEVLE 260 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + + + + + + H ++ + + L + + + Sbjct: 261 HQIELLEGRQRKSV--SRALAAGQTYRSRIHLVSGGERKAHEVV-VLPVDGMTAGAAVDV 317 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364 + S + + T+D+ ++S + L + N +F L + D + Sbjct: 318 TDIESAQGELERQSSAYDRTLDRVETAVAIFSPDHKLAFYNAAFAKLWSLDT-DWLASNP 376 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + +LD +L + ++PV+ +R + A T + + Sbjct: 377 SDNVILD--RLREIGVLEPVVNHRDWKAQ--VLACYQTGTPFDDTWNLTDGRILHVMAEQ 432 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + ++ + + + + L + +G+A+ G + N+A + Sbjct: 433 RPDGGVTFLFADETERLSLESRYNALIDVQRETLNSLKEGVAVFGTNGRLKLFNKAFCNI 492 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGS--TKEEKLLS 540 + + + P + ++ I E+ T T+++ ++ Sbjct: 493 WHMQQKRLAELPHVGEVIAAAQTLHPNNDTWRRIGHAVTAFLDERETFSGQMTRDDGVV- 551 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + + LP + +T D+++ K+ + L + K++F+ +S+E+RTPL Sbjct: 552 VDYALMPLPDGA-TLMTFADVTDAKRAERALVERNEALVAADRLKTNFIGHISYELRTPL 610 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +IIGFSE++ + FG L N + EY I S +L I+ND+LD++ I++G M L Sbjct: 611 NSIIGFSEMLASPLFGDL-NAKQREYLADIMSSSKTLLAIINDILDLATIDAGAMQLKPT 669 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PV + + AI ++ A R+ I + A+ + +AD ++Q+ N+LSNA+ F+ Sbjct: 670 PVGVRALIDAAILGIRERAVRNRLTIEIAVADEVNEFVADEARMRQVLYNLLSNAVGFSK 729 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG-QIPNSQQIRGEGTGLGLP 779 G + + + N +I RV D GVG+ + + F Q S G GLGL Sbjct: 730 VNGTVRL-ACWSENGTIIFRVEDDGVGIPKDRIGRIFDRFESQSHGSDHR---GAGLGLS 785 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + K++V+ + G +FS +GT + + P + + D Sbjct: 786 IVKSLVELHGGTIEVFSEENRGTRVTVRLPEHPVTPAGD 824 Score = 39.6 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 28/347 (8%), Positives = 79/347 (22%), Gaps = 27/347 (7%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSAY 314 + DF L + S R S S + Sbjct: 29 ATMLAGFVNGHGIGSVDFDFRHTWLFLTVAVGALAAIAVIWRMGSMARREARAAKSESVH 88 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + P + G + + + + + L + Sbjct: 89 LRRNLAAADAIIRAEPQVLVFWEQGQAVRIVSHTLASVPGLPEHHAEILRFGQWLES--- 145 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L + I + + Sbjct: 146 ---------TSAHSLKAALDKLFVNGRSFSIILKTIAGGIIEAEGRAAGGRAVLRLKEVS 196 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + E + ++ ++L + + + ++ N A + E Sbjct: 197 GYKLEIARIEDQHATLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQAVDAKSEI 256 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + LE ++ + + ++ + G ++ + + LP Sbjct: 257 EVLEHQIELLEGRQRKSVS---RALAAGQTYRSRIHLVSGGERKAHEVVV------LPVD 307 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS--HEI 596 + D+++ + + +L ++ +A S H++ Sbjct: 308 GMTAGAAVDVTDIESAQGELERQSSAYDRTLDRVETAVAIFSPDHKL 354 >gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC 15579] gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC 15579] Length = 569 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 172/391 (43%), Gaps = 31/391 (7%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 EDEIGRLGITFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG DI+ + + L +L E L K + Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LERVLKDKEPGYKEINILWPEKRTLRIK 317 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 II K + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 T+I GFSE +K ++ I+ + + ++ND+L +S IE K L E Sbjct: 363 TSIKGFSETLK----YVEDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIKE 418 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 419 EIDLNELIEKVYCLVKKSAEDKNIKINI-VGGKVPLLIGNKDKYNQMIINLIDNAIKYTE 477 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G++ I T + +I V DTGVG++ L++ + F ++ ++ GTGLGL + Sbjct: 478 PNGEVNIGTR-QDKDNIIFWVEDTGVGISKEHLDRIFERFYRVDKARSRAEGGTGLGLAI 536 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 K +V GK + S P KGT + PL Sbjct: 537 VKHIVLGINGKIEVKSEPKKGTKFIVKIPLS 567 >gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104] gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322] gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8] gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5] gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96] gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704] gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1] gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG] gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104] gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200] gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322] gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1] gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2] gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200] gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3] gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8] gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5] gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96] gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704] gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1] gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol] gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1] gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis D6] gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus faecalis CH188] gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG] gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus faecalis X98] gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712] gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613] gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1] gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11] gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411] gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109] gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860] gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134] gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855] gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512] gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102] gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635] gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516] gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137] gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017] gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027] gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244] gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012] gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031] gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043] gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312] gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302] gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341] gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342] gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346] gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630] gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62] gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF] Length = 609 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E +L Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K IR F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 37.7 bits (86), Expect = 7.9, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 934 Score = 338 bits (866), Expect = 3e-90, Method: Composition-based stats. Identities = 116/671 (17%), Positives = 223/671 (33%), Gaps = 37/671 (5%) Query: 172 NREFSGFRGF---GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + G G G + + R D + + + ++ + Sbjct: 136 DSNIIGVVGCDIKGAITSANDEFLRMTGFSRADVLAGRVRWDEMTPADLKPLDEPAMEEL 195 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 K + V S S + + + Sbjct: 196 LSKGKNTAYEKALIGKDGRRVPVVVGAALLRNDPESVISFVLDLTRLRLTEQRLTVQYAV 255 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFD-------EGENLTPETVDKCPIPFFVYSHGNL 341 L S ++ + + ++ P + Sbjct: 256 TRVLAEAVTVRESVAPILQALCQSLDWEFAIIWTVDQQAGVLRYLESWPTDTLLLDEFRS 315 Query: 342 FYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 +F + + L P A + L + Sbjct: 316 LKQPITFTPGMGLPGRIWATGQPAWIECLATDPNFPRAAAAQRAGLQSAMG--------- 366 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP----EDVDTRINKRKMEIEVMQLCS 456 I+ + + + + + G + ++ + + + Sbjct: 367 FPIRLDDQVLGVIEGFSTHGRPPDQDLLQLMGAIGSQIGQFMERKRAEESLRQSQALFDR 426 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + T I+++ I+ N +LF +P +D + K + Sbjct: 427 FMSHTPVAAWIVDQASRIVYLNPTYFRLFNFPAQDAIGKTVAELYPPQFAEQFLQNNRPV 486 Query: 517 LSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL---- 571 + ++ +T+E + L + I + P DI+E KQ + + Sbjct: 487 FTHQEVVETIETAPRTDGSTGEFLVYKFPIPQEPDELLLGGVALDITERKQAEAERERLL 546 Query: 572 ---SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 A++ AE + K +FLA +SHE+R+PL I+G++++++ + F P + + Sbjct: 547 QREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAP---EKAQQALQ 603 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+R+ L ++ DLLD+S+I GKM L+ PV L + A+ VQL A K I + Sbjct: 604 TIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLER 663 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 AN+I I D ++QI N+LSNAI F+P G ++ I E ++VRDTG G+ Sbjct: 664 HLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERV-GAEAQMQVRDTGKGI 722 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807 L + F Q + + G GLGL + + + + + G S +G ++ Sbjct: 723 NPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFKVR 782 Query: 808 FPLYDTSHPHD 818 PL H + Sbjct: 783 LPLLKVGHSSE 793 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 37/415 (8%), Positives = 109/415 (26%), Gaps = 63/415 (15%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGK 146 D G + ++E + G ++ G D + P + +LL + + Sbjct: 146 DIKGAITSANDEFLRMTGFSRADVLAGRVRWDEMTPADLKPLDEPAMEELLSKGKNTAYE 205 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L +G VP+ + A + + F + R+ + + + + Sbjct: 206 KALIGKDGR--RVPVVVGAALLRNDPESVISF--VLDLTRLRLTEQRLTVQYAVTRVLAE 261 Query: 207 LHEIKKGHSS------------------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 +++ + V+++ + +S P + ++ SL + Sbjct: 262 AVTVRESVAPILQALCQSLDWEFAIIWTVDQQAGVLRYLESWPTDTLLLDEFRSLKQPIT 321 Query: 249 HKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYT---------------------- 284 + + L +F Q Sbjct: 322 FTPGMGLPGRIWATGQPAWIECLATDPNFPRAAAAQRAGLQSAMGFPIRLDDQVLGVIEG 381 Query: 285 KKQYFGTLQNNSKESFEYLSHR-----NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338 + + + + + + + L + P+ ++ Sbjct: 382 FSTHGRPPDQDLLQLMGAIGSQIGQFMERKRAEESLRQSQALFDRFMSHTPVAAWIVDQA 441 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + Y NP++ L + + D I ++ L + + Sbjct: 442 SRIVYLNPTYFRLFNFPAQDAIGKT--VAELYPPQFAEQFLQNNRPVFTHQE----VVET 495 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + + + + Q P+ + G+ + + + + + E + + Sbjct: 496 IETAPRTDGSTGEFLVYKF--PIPQEPDELLLGGVALDITERKQAEAERERLLQR 548 Score = 67.7 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 7/164 (4%) Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + R +++ + ++++ G+ + +G I S N ++ Sbjct: 105 HLCGALRLAQDRT--RTTLEQLQANETRFRRLVDSNIIGVVGCDIKGAITSANDEFLRMT 162 Query: 486 GYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 G+ D+L + + + E+LS EK +G K+ + + + + Sbjct: 163 GFSRADVLAGRVRWDEMTPADLKPLDEPAMEELLSKGKNTAYEKALIG--KDGRRVPVVV 220 Query: 544 IIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKS 586 L ++ D++ + + +L+ + + + Sbjct: 221 GAALLRNDPESVISFVLDLTRLRLTEQRLTVQYAVTRVLAEAVT 264 Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 27/258 (10%), Positives = 67/258 (25%), Gaps = 13/258 (5%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYG 145 W +D + ++ + A IG + ++ + + Q Sbjct: 436 WIVDQASRIVYLNPTYFRLFNFPAQDAIGKTVAELYPPQFAEQFLQNNRPVFTHQEVVET 495 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 T +G+ + +P + G G+ A +RL ++ Sbjct: 496 IETAPRTDGSTGEFLVYKFPIP-QEPDELLLG----GVALDITERKQAEAERERLLQREQ 550 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + + ++ E + S + P + + L + + + + + Sbjct: 551 EAREQAESANRIKDEFLAVLSHELRSPLNPIL-GWAKLLQTRPFAPEKAQQALQTIERNA 609 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + ED ++ K + L + + +L + Sbjct: 610 KLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLERHLANDI 669 Query: 326 VDKCPIPFFVYSHGNLFY 343 F G L Sbjct: 670 ------GFISGDAGRLQQ 681 >gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1058 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 120/651 (18%), Positives = 225/651 (34%), Gaps = 52/651 (7%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 H R + G + D + + G + E Y + V Sbjct: 217 AHQARQVSQASQDGGKADDDYLRVLAAWLGDAPGEPFDYALHGTPCARVLNSPDLCVYPD 276 Query: 244 TEYYAHKDDVLKTE---KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + L + + + + + + ++ + Sbjct: 277 GVQENFPEAELHASLGIRSYMGLALRDARGTPLGVLAVFHDLPMAPPTGESMALMRILAG 336 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVY-SHGNLFYANPSFLLLTKYKSVD 358 + E E + + + + + A+P+ + D Sbjct: 337 RATAELERLRAGRALRESEARYRGLFENNHVVALLIDPTTKAIRDASPAAAEFYGWPR-D 395 Query: 359 DIEIAGGLSTLLDAPK---------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + P ++ T + T+ + E Sbjct: 396 VLRTMHISDINTLPPGTLHGELSSAARGERQRFRFRHRLANGTTRDVESNTGTLVLHGEP 455 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 L I + + R + + ++L ++E+ D I + + Sbjct: 456 LLY-------------------SIITDVTEQRRAEEALRHSELRLRMLVESAGDAIYLAD 496 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 G IL N G+ E +LR E+ V E+ S T Sbjct: 497 GAGHILDANPEAEHQTGHTREQLLRMTLFDIDERLDQRVFARLRAELESARKAT---FET 553 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC------YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 T+ L + + + ++ + + D S K+ +++L AK++AE S Sbjct: 554 THRTRNGTPLPVEVRMAQVEETGEAEGDPLLLAIVRDSSARKRAESELRCAKEVAEAASR 613 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K +FLA +SHEIRTPL I+G ++++ + Y +S + ++ D Sbjct: 614 TKGEFLANMSHEIRTPLNGIMGMLQLLQTDPPKAMRTV----YVGAATQSCRRLGLLLGD 669 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD+S+IE+GK+ LH EP + E L + A E+ + +R S IPR + D Sbjct: 670 ILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLTLRVSVDERIPRHLRGDAM 729 Query: 703 SVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 ++Q+ N++ NA+ FT G + + + + V+ VRDTG+G+ L+ + Sbjct: 730 RLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFTVRDTGIGIAEERLKDIFE 789 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 PF Q + R +G GLGLP+ + +V G + STP GT + P Sbjct: 790 PFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGAGTAFSVSLP 840 >gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans DS-1] Length = 846 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 176/404 (43%), Gaps = 52/404 (12%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 QL + T G+ I +R G I+ N ++ G EDI + L ++ Sbjct: 263 EQLALVANGTDAGVLIADRTGQIVWANAGYLRMTGLEREDIEGRLPRDILVRHAGIGALK 322 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567 L E + + +G TK+ I I+ + + Y + +D+S KQ Sbjct: 323 ILAESAADGEGR--NVEMIGLTKQGTQYWASIEIRPVRDAKGSIRNYIVVENDVSRAKQT 380 Query: 568 K-----------------------------------NKLSHAKKIAEKESSHKSDFLARV 592 + LS AK+ AE + KS FLA + Sbjct: 381 EIKLKRSQLELQDRVLDLQHTSLQLEQERAKLTRTAQDLSIAKEAAENANRAKSAFLATM 440 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTP+ ++G ++++ + + I SG +L I+ND+LD+SK+E+ Sbjct: 441 SHELRTPMNGVLGMADLLLSGPL----TQEQRDGVTTIRESGECLLTILNDILDLSKLEA 496 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711 G++ L EP S + + +++ A EK +++ S +IP+ I++D ++QI N+ Sbjct: 497 GRLELEPEPTSPMTVLETVVEVLRPNAKEKGLVLTKSEEGHIPQRIMSDPTRLRQILFNL 556 Query: 712 LSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + NAI FTP G ++ +S E++ VRDTG+G+ L + F Q +S Sbjct: 557 VGNAIKFTPQG-EVSVSLAARACDDPDTAELVFTVRDTGIGIPEAMLPRLFTRFQQADSS 615 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + + + G + ST KG+ + P+ Sbjct: 616 ISRTYGGTGLGLAITRELTTLMNGTIEVESTEGKGSCFTVRLPV 659 Score = 46.2 bits (108), Expect = 0.026, Method: Composition-based stats. Identities = 24/236 (10%), Positives = 57/236 (24%), Gaps = 10/236 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + + + G + G D+ I + + + Sbjct: 280 DRTGQIVWANAGYLRMTGLEREDIEGRLPRDILVRHAGIGALKILAESAADGEGRNVEMI 339 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSH 206 +GT + I++ P+ + + + + + L + Sbjct: 340 GLTKQGTQYWASIEI--RPVRDAKGSIRNYIVVENDVSRAKQTEIKLKRSQLELQDRVLD 397 Query: 207 LHEIKKGHSSVEKEKYDIFSQ-----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + ++ R K+ + + L Sbjct: 398 LQHTSLQLEQERAKLTRTAQDLSIAKEAAENANRAKSAFLATMSHELRTPMNGVLGMADL 457 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 L S + +++ TI + + + SK L P+ E Sbjct: 458 LLSGPLTQEQRDGVTTIRESGECLLTILNDILDLSKLEAGRLELEPEPTSPMTVLE 513 >gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248] gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248] Length = 609 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E +L Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K IR F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 37.7 bits (86), Expect = 8.1, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 2607 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 114/614 (18%), Positives = 230/614 (37%), Gaps = 28/614 (4%) Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 +VE + R+ +++S L + + Sbjct: 2002 DAEAVEGTFALASQASQAIRNARLFDQISKLAADLEVRVLERTADLARATDQLSEEKERL 2061 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 E H I L T+ +Q + E L + + G L + Sbjct: 2062 EAVHAITLELTTQLDLDSIIQRALELISENLGVVRGSIMLRDTENGSLLCRAVLYNRGDA 2121 Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + + + + + ++ + +D+ + +++ Sbjct: 2122 RAANIPLSFQGSEGLAGWVMRTQEPVNVSDVNEDERWVKEAGRADDVRSVAAVPIKTNDA 2181 Query: 393 CIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + ++ + I A+ N I I + E Sbjct: 2182 ALGVLVLSSPVEHYFTDSQMNLLGTIASVIASAVSNAQLYNFITELATRNSILLEEQREE 2241 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPS 507 + ++ + ++G+ +++ +G + N A ++ P E +LR+P + + Sbjct: 2242 SSKSAAVFRSVTEGVIVLDPQGQVTLFNPAAEQVLEIPAERLLRQPLNRLHDYGEDDDQR 2301 Query: 508 VMNHYLTEILSLDLRQTLEKITLG-----STKEEKLLSLRIIIKKLPFSSCY--SLTMHD 560 L L L+Q E + T ++++L I P Y + + D Sbjct: 2302 KRAQTLYTGLMTGLKQVQETDKIYSSSLDLTNPNQVIALNIAPVIGPDGQGYGKVIVLRD 2361 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I+ + K F++ VSHE+RTPLTAI G+ +V+ L + Sbjct: 2362 ITR--------------EIEADEAKRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLTS 2407 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + Y I + N + ++ D+L+ S+ ++ K L+F +S+ E + E +S ++L Sbjct: 2408 D-QVSYLGIIKNNTNRLKALIEDILEFSRPDASK-KLNFTRLSIPEVIDEVVSSLRLEYQ 2465 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K + + +++P ++AD + + Q+ N+ SNA+ +T GG I + + Sbjct: 2466 RKDMSVEVDAPHDLPTVMADQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQVD 2525 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTGVGM+ + +K +PF + N + GTGLGL +AKA+++ + G+ ++ S K Sbjct: 2526 VEDTGVGMSPEQRKKLFRPFYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIGK 2585 Query: 801 GTLIEIIFPLYDTS 814 G+ I PL T Sbjct: 2586 GSTFSFILPLQQTD 2599 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 9/117 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-------N 141 +D G + + + + A +++ L + D D L Sbjct: 2259 LDPQGQVTLFNPAAEQVLEIPAERLLRQPLNRLHDYGEDDDQRKRAQTLYTGLMTGLKQV 2318 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 K ++ TN I L P+ + + G+ ++ + + + Sbjct: 2319 QETDKIYSSSLDLTNPNQVIALNIAPVIGPDGQ--GYGKVIVLRDITREIEADEAKR 2373 >gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus ferrooxydans PV-1] Length = 701 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 112/495 (22%), Positives = 211/495 (42%), Gaps = 25/495 (5%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA----------IK 382 ++G + N + Y++ D + ++ A Sbjct: 42 IATDANGVIQIFNVGAERMLGYEAADVMNNITPADLSDPQELIARAEALSAELDTPITPG 101 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + A+ + + I ++ + Sbjct: 102 FEALVFKATRGIEDIYELTYIRKDGSRFPAV-VSVTALRDPQNNIIGYLLIGTDNTARKQ 160 Query: 443 NKR-------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + ++ + S++E+ D I + GII N+ + L G ++++ Sbjct: 161 VEADQAKLDQRLRDQQFYTRSLIESNIDAIIATDPSGIISDVNKQMEALTGCTRDELIGA 220 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SC 553 P F P + +L+ E +E ++S Sbjct: 221 PMKNFF--TDPQRAEAGIKRVLNEKKVTDYELTARAWDGKETVVSYNATTFYDRDRKLQG 278 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D+++ K +L AK +AEK S KSDFL+ +SHE+R+PL AI+GF ++++++ Sbjct: 279 VFAAARDVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESE 338 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 P E I ++G +L ++N++LD+SK+ESGK+ L EPV L E + E S Sbjct: 339 --SPPPTDSQKESIAQILQAGWHLLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQS 396 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A E+ I + ++ I AD VKQI +N+L+NAI + + G+I + T ++ Sbjct: 397 MVEPQAQERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESA 456 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + ++D+G G+T +LE+ +PF ++ + EGTG+GL ++K +V+ G Sbjct: 457 PGRLRISIKDSGAGLTPEQLEQLFEPFNRL-GQENGSEEGTGVGLVVSKRLVELMGGTIG 515 Query: 794 IFSTPAKGTLIEIIF 808 S+ G++ Sbjct: 516 AESSLGAGSVFWFEL 530 Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats. Identities = 29/321 (9%), Positives = 74/321 (23%), Gaps = 42/321 (13%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEIS 99 ++ N + Q + + N+ F I DA+G ++ + Sbjct: 3 RQTNETAGIDDAIPEAGQPKALLREALQNAIFNSANFSSIA--------TDANGVIQIFN 54 Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--------------------- 138 + +G A + + +++ DP I Sbjct: 55 VGAERMLGYEAADV----MNNITPADLSDPQELIARAEALSAELDTPITPGFEALVFKAT 110 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL-- 196 R + T +G+ P ++ + G+ G + R + Sbjct: 111 RGIEDIYELTYIRKDGS--RFPAVVSVTALRDPQNNIIGYLLIGTDNTARKQVEADQAKL 168 Query: 197 ---GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKD 251 + L E I L ++++ D Sbjct: 169 DQRLRDQQFYTRSLIESNIDAIIATDPSGIISDVNKQMEALTGCTRDELIGAPMKNFFTD 228 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + +E+ + + + T + ++ + + Sbjct: 229 PQRAEAGIKRVLNEKKVTDYELTARAWDGKETVVSYNATTFYDRDRKLQGVFAAARDVTD 288 Query: 312 SAYFDEGENLTPETVDKCPIP 332 + D +K + Sbjct: 289 RKHLDVELEDAKSVAEKASLA 309 Score = 45.0 bits (105), Expect = 0.051, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 5/175 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + L +++ T Y T Sbjct: 193 TDPSGIISDVNKQMEALTGCTRDELIGAPMKNFFTDPQRAEAGIKRVLNEKKVTDYELTA 252 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + A Y R+R+ G F + Sbjct: 253 R---AWDGKETVVSYNATTFYDRDRKLQGV--FAAARDVTDRKHLDVELEDAKSVAEKAS 307 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 K S + M+++ T+ + + LLT Sbjct: 308 LAKSDFLSSMSHELRSPLNAILGFGQLMESESPPPTDSQKESIAQILQAGWHLLT 362 >gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25] gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator [Vibrio sp. Ex25] Length = 873 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 12/374 (3%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPDT 293 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 L S+ + L TK + + + + + + DI+ Sbjct: 294 DPNTVALLS-KSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVERDIT 352 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +LS A ++K KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 353 DRRRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +S N ++ I+ND+LD SK+E+GK+ L E V +L A++K Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKK 468 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + ++ D + QI LN++ NA+ FT G +++ + + V Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESEHGF-DFSV 526 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L M F Q+ S R EGTGLGL ++K ++ G+ + S KG Sbjct: 527 SDTGIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKG 586 Query: 802 TLIEIIFPLYDTSH 815 + L S Sbjct: 587 SCFSFSLQLPKQSQ 600 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148 G + ++ + ++IG ++ DPN + +++ + + Sbjct: 257 PDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPDTDPNTVALLSKSVRKHSPIRVEIL 316 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +V ++L+ P++ + R + K Sbjct: 317 NYTKSKHPYWVELELS--PVFDEDGGL--LRFIAVERDITDRRRMERRLSSALDKSKKAM 372 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 7/134 (5%) Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E + + + G + + NP+F LT+Y + I + G LL P D + Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPG--ELLQGP---DTD 294 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 +L +S R + ++ + ++ + +E + D Sbjct: 295 PNTVALLSKSVRKHSPIRVEILNYTKSKHPY-WVELELSPVFDEDGGLLRFIAVERDITD 353 Query: 440 TRINKRKMEIEVMQ 453 R +R++ + + Sbjct: 354 RRRMERRLSSALDK 367 >gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 859 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 121/526 (23%), Positives = 218/526 (41%), Gaps = 29/526 (5%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352 + ES + L E ++ PI ++ G + +N SF + Sbjct: 223 DTVCESVIARDITENKKLHKELYNSEKKFRSIYEQSPIGIELFDADGEVISSNESFCKMF 282 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + + S + P + ++ + S TC + + N+ Sbjct: 283 NLDDIKEFK----YSNFFNTPHIYESVKNRIRNKKTSRITCKYKLNQRADFETNKNRIYY 338 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINRE 471 + N+ + + + ++K++ SD I I + + Sbjct: 339 FDIVTTPILNEKKDLTAILLQVQDITKLKTVEKKVQN--------FTNLSDDIFSIFDYD 390 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G L + ++K+ + +D+L K F F+ + + + +L + Sbjct: 391 GKFLQVSAGMNKILEWSEKDVLYKNFKDFVHLDDIQGCVNDFSYMLKCGRHIFKNRYI-- 448 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K + + S DI++ + +++L AK AE+ + KS FLA Sbjct: 449 -CKNGTYKWIEWNSFVIKEYSLIYSIGRDITKRMESEDELKKAKIAAEEANIEKSRFLAN 507 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTP+ I+G +++ EY N + S + +LDI+ND+LDISKIE Sbjct: 508 MSHEIRTPINGIMGMTDLTLMTELTN----EQREYLNMVKASSSHLLDIINDILDISKIE 563 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIAL 709 SGK L P +L+E +S+ + + + A +K I + NI I+ D + QI + Sbjct: 564 SGKFKLDLVPFNLEERISKMVKNISVLAYKKFIEVMYFIDPNISEGNIIGDPSKLDQILM 623 Query: 710 NILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N+LSNAI FT G I+ + ++ V DTG+G+ +++K K F QI +S Sbjct: 624 NLLSNAIKFTDRGNIIVCAKKVEGPKDKIKIQFSVSDTGIGIPEDKMDKLFKTFSQIDDS 683 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII---FP 809 + GTGLGL ++K +V+ G ++ S +G+ FP Sbjct: 684 YTKKYGGTGLGLSISKHLVNMMNGDIWVTSKHNEGSCFYFTAEFFP 729 Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL SI +A+ D I +G I+S N+A ++FGY +++L K F++ + N Sbjct: 128 QLASIADASEDAIIGKTLDGKIISWNKAAERIFGYSEQELLGKKFSIL----DNNENNKV 183 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNK 570 L +S + + E + E LS+ I K + DI+E K+ + Sbjct: 184 LCSTISKNGIKDYEIEMINRNNEVIYLSISISPVKNYSGDTVCESVIARDITENKKLHKE 243 Query: 571 LSHAKKI 577 L +++K Sbjct: 244 LYNSEKK 250 Score = 78.1 bits (191), Expect = 5e-12, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 78/260 (30%), Gaps = 17/260 (6%) Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 D G + N + + Y + + + L +N Sbjct: 128 QLASIADASEDAIIGKTLDGKIISWNKAAERIFGYSEQELLGKKFSI--------LDNNE 179 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 K + S + + ++ N + + ++ I + + Sbjct: 180 NNKVLCSTISKNGIKDYEIEMIN---RNNEVIYLSISISPVKNYSGDTVCESVIARDITE 236 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFT 498 + +++ + SI E + GI + + +G ++S+N + K+F ++ F Sbjct: 237 NKKLHKELYNSEKKFRSIYEQSPIGIELFDADGEVISSNESFCKMFNLDDIKEFKYSNFF 296 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554 + + + L + T + ++ I+ + Sbjct: 297 NTPHIYESVKNRIRNKKTSRITCKYKLNQRADFETNKNRIYYFDIVTTPILNEKKDLTAI 356 Query: 555 SLTMHDISEWKQEKNKLSHA 574 L + DI++ K + K+ + Sbjct: 357 LLQVQDITKLKTVEKKVQNF 376 Score = 41.9 bits (97), Expect = 0.50, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 43/140 (30%), Gaps = 7/140 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G + ++ + G +++G + + + + N + + + + + Sbjct: 146 DGKIISWNKAAERIFGYSEQELLGKKFSIL---DNNENNKVLCSTISKNGIKDYEIEMIN 202 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +Y+ I ++ P+ + + I + +KKF ++E Sbjct: 203 RNNEVIYLSISIS--PVKNYSG--DTVCESVIARDITENKKLHKELYNSEKKFRSIYEQS 258 Query: 212 KGHSSVEKEKYDIFSQQSPP 231 + ++ S Sbjct: 259 PIGIELFDADGEVISSNESF 278 >gi|237654220|ref|YP_002890534.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237625467|gb|ACR02157.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1023 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 104/631 (16%), Positives = 208/631 (32%), Gaps = 30/631 (4%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 G+R D F+ + + + + + + P L + + S Sbjct: 97 GRRDDAAFARMRALVEELARLRGWQGVALLDADGAPTLAVGSPDLSAHAELIADVLRQPR 156 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + L + + + E + + Sbjct: 157 VELVDLHQDARGRTHYGVLAPVGAPSRGVAYLTWEAETALYPMVEAWPVPTRSAETYLVR 216 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + + A G +L + Sbjct: 217 REGEGVRFLTP------LRHQADAAL----ALERPLATPDLPAARAALGERGILSGGRDY 266 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + T A + + + A + Sbjct: 267 RGVPV-LAYAAAVEGTPWLMLAEIDEREAYSGIRTLTWGMGVVMALGLMLVYSGGYLVWR 325 Query: 437 DVDTRINKRKMEIE---VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDI 492 + + ++ + I E G+ +++ I N + + G V ++ Sbjct: 326 RDREQRERATLQARQIAEARFRVIFEQAPLGVVLLDPRTRRITEANPRFAAIVGRSVGEL 385 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---- 548 + + + L + + + + + + + + Sbjct: 386 VGVDPIALTHPDDVAESLRQLGRLDAGRIAG-YRLNKRYLRPDGTPVWVSLAFAPVQVAS 444 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + Y + DIS + + +L A A ++ KS+FLA +SHEIRTP+ A++G ++ Sbjct: 445 EDAPRYLGIVEDISARIEMEERLREASAAAAAANAAKSEFLAHMSHEIRTPMNAVLGLAQ 504 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 V++ + P + I +G +L I++D+LD+SKIE+G++ + P L + Sbjct: 505 VLEREPLAPA----QRDMVGRIRGAGASLLAILDDVLDLSKIEAGQLRIEPRPFDLRALL 560 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + SL+ A K + +R P ++ D ++QI +N++SNAI FT G ++ + Sbjct: 561 ANLDSLMGQAARAKGLALRIEPPALPPGQLRGDGLRIEQILINLVSNAIKFTERG-EVSL 619 Query: 728 STTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +V LR VRDTG+G+ + PF Q R GTGLGL + K Sbjct: 620 RVRADEVGDVRLRLRAEVRDTGIGIAPEAQARLFAPFTQADAGIARRFGGTGLGLSICKR 679 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +V+ G + S P G+ PL + Sbjct: 680 LVELMGGAIGVHSQPGLGSTFWFELPLERVA 710 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 42/405 (10%), Positives = 92/405 (22%), Gaps = 46/405 (11%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWP 151 + E + +G +++G+ ++ + + L + Sbjct: 366 RITEANPRFAAIVGRSVGELVGVDPIALTHPDDVAESLRQLGRLDAGRIAGYRLNKRYLR 425 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +GT V + LA P+ + + R GIV + + + + K Sbjct: 426 PDGTP--VWVSLAFAPVQVASEDAP--RYLGIVEDISARIEMEERLREASAAAAAANAAK 481 Query: 212 KGHSSVEKEKYDIF-------------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + +P + + A DDVL K Sbjct: 482 SEFLAHMSHEIRTPMNAVLGLAQVLEREPLAPAQRDMVGRIRGAGASLLAILDDVLDLSK 541 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 P NL+ + E + Sbjct: 542 IEAGQLRIEPRPFDLRALLANLDSLMGQAARAKGLALRIEPPALPPGQLRGDGLRIEQIL 601 Query: 319 ENLTPETV-----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA---------G 364 NL + + + G++ + + T + + Sbjct: 602 INLVSNAIKFTERGEVSLRVRADEVGDVRLRLRAEVRDTGIGIAPEAQARLFAPFTQADA 661 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYR---------SDRTCIAASARLHTIQWNRENSLAMTF 415 G++ L + + V L + L + S+ + Sbjct: 662 GIARRFGGTGLGLSICKRLVELMGGAIGVHSQPGLGSTFWFELPLERVAGGEPASVGVVA 721 Query: 416 IPFEKANQFPENMPQNGIEPED----VDTRINKRKMEIEVMQLCS 456 P P + +D D +E L + Sbjct: 722 APEGDRAAGPRLAGMQVLVVDDSAMNRDLVQGALALEGACATLAA 766 >gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47] Length = 784 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 97/488 (19%), Positives = 209/488 (42%), Gaps = 27/488 (5%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + + N + ++ + E A L + + + + + Sbjct: 132 RIKHLNA----VLDIRAEEGSEAARAAVIQNLDQNLMGKIDDLAISMRKIEEDLLVVREA 187 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSI 457 + T + +++ + E + + + ++ Sbjct: 188 MATRAYRSGIVTSVSSTLIGLI-----LVGSVLYLLERNRRKAERDALMLNATRERVQLA 242 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L+A G I+ E L T+ ++ G E++ + + + + + + + Sbjct: 243 LDAAEMGAWNIDPETNTLQTDERYRRIHGVEQEEMTFEDSLKRIHPDDRARVRQAVRASM 302 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC------YSLTMHDISEWKQEKNK 570 S ++ + + I + + T+ D++E K+++ + Sbjct: 303 SPLDPSPYSVEYRVVHRDGSIRWVSSKGIARASRRRGKAVLTSFDGTVADVTERKRQEER 362 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L +++IA + KS+FLA +SHEIRTP+ AI+G+++V+ G L +P I Sbjct: 363 LQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLL----GHLEDPDNRNCVMII 418 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 R+G +L ++ND+LD+S+IE+GK+++ E V L V + SL+Q+ A+EK + + F Sbjct: 419 KRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEF 478 Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGV 746 +P+ I D ++Q+ +N++ NAI FT G + + + V + DTG+ Sbjct: 479 EGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGS-VRLKVRFMKGADPPVVEFSIVDTGI 537 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + ++ KPF Q S + G+GLGL +++ +++ G+ + S +G+ + Sbjct: 538 GISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEMSLESELGEGSTFFV 597 Query: 807 IFPLYDTS 814 P++ Sbjct: 598 RLPVHSVE 605 Score = 41.9 bits (97), Expect = 0.49, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 18/252 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------Q 140 WNID + E + G + M D +H D + ++ Sbjct: 251 WNIDPETNTLQTDERYRRIHGVEQEE---MTFEDSLKRIHPDDRARVRQAVRASMSPLDP 307 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + + + + +G+ +V A R + G V +R Sbjct: 308 SPYSVEYRVVHRDGSIRWVSSKGIARASRRR-GKAVLTSFDGTVADVTERKRQEERLQRS 366 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ ++ K + + P + L + D+ Sbjct: 367 EQIALAANQSKSEFLANMSHEIR-------TPMAAILGYADVLLGHLEDPDNRNCVMIIK 419 Query: 261 LLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 SL + D I + + L + + R + E E Sbjct: 420 RNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEFE 479 Query: 320 NLTPETVDKCPI 331 P++++ P Sbjct: 480 GRVPQSIETDPT 491 >gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 7822] Length = 1262 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 119/807 (14%), Positives = 255/807 (31%), Gaps = 89/807 (11%) Query: 67 YLDSENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTIGNYAFKMI-GMR 117 E F T++ + +D + S+ + + G Sbjct: 479 TAQKETEFALKQGKETLKLFFKYVPAGVVVVDRNMCYLMASQRWLDDYKISSDDTLQGHS 538 Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 L + I L + T + +GT ++ ++ +P Y + + Sbjct: 539 LYQIV-PEIPPKWRQIHQLCVKGATEKCDEELFIRSDGTEQWLRWEI--VPWYDNLGKEA 595 Query: 177 GFRGFG-----------IVHVN------RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 G F + R+ L + L E KK + K Sbjct: 596 GIIIFTENISERKQAEIALQELNSQLEQRIIERTEQLQRAKKNIEQELLERKKLERELRK 655 Query: 220 EKYDIFSQQSPPPHLRMKNKVSSL---------------------------TEYYAHKDD 252 + + + ++ ++ L + Sbjct: 656 REQLLDGFFNAASDAKVGMCINDLNFRFLKINQALADINGYSIEDHLGRNLDDVLPELAP 715 Query: 253 VLKTEKYPLLTSEESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 LK ++ S + L + + + ++ + + Sbjct: 716 TLKPLWENVIDSNQPINLEISAVVPSSRGVMRYWSVAYFPILAENENLIGIGAVVIEITE 775 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 S + + E ++ P S + Y N + L + Sbjct: 776 SKRLELEQAKLIEILEATPDIIATASSATQKVGYCNQALRKLLGVAPNSPVTDLTIADVY 835 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + +A L + + + Sbjct: 836 --PQWAYSMIQNEGIPTAIREGIWRGETAFLGI----DGEEIPFSQVIIAHTFGTEAVQS 889 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + I + + + + + + S+L + ++ +G + N L Y Sbjct: 890 VSTIARDISEQKQKEAILRESDRRWQSLLNNIKLIVVGLDLQGNVEYVNPFFLSLTEYTE 949 Query: 490 EDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 +IL K + E+L + + L S+ EE+L++ + + Sbjct: 950 PEILGKNWFNQFLPADIQTSLTTTIFRELLEQEKYIYYQNPILTSSGEERLIAWTNTVLR 1009 Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 DI+E ++ + K +F++ VSHE+RTPLT++ Sbjct: 1010 DANEQPIGTVSIGQDITESEKL--------------ARMKDEFISVVSHELRTPLTSLQA 1055 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++ + P + E N ++ +VND+LD+ ++ SGK+ L + D Sbjct: 1056 ALSLLYEKIIDPTSDEGQ-ETIEIATEGVNRLVRLVNDILDLERLSSGKIRLEKQFCQTD 1114 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + A+ ++ A E +I+I++ + N D + QI +N+L+NAI F+P I Sbjct: 1115 GVILAALDQIKEIAKEAQIIIKSEYEN--FFFWCDSDRLVQILINLLNNAIKFSPQNSII 1172 Query: 726 IISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++ ++ + D G G+ + +LE FGQ+ S GTGLGL + ++ Sbjct: 1173 ELKVQQQNSPMPSLLFSISDQGRGIPSDKLESIFDRFGQVDASDSRAKGGTGLGLAICRS 1232 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V + G+ ++ S +G+ PL Sbjct: 1233 IVTQHGGEIWVNSKLGQGSTFYFTIPL 1259 Score = 107 bits (267), Expect = 9e-21, Method: Composition-based stats. Identities = 59/551 (10%), Positives = 146/551 (26%), Gaps = 61/551 (11%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + + + G + +G ++ + + Q W G+ + Sbjct: 261 KIIYWNRGAERLYGWTKEEALGQKIESMLQTQFPISLEAAHQTIIEQEYWEGELLHIRRD 320 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G + ++ + K +++ E+ Sbjct: 321 G--QPLIVESRQVLQRDSKGNPE--IILETNRDLTRRKQLEENLKINEERLRLTLELTGI 376 Query: 214 HSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 S K + +F P + L + ++ + ++ + + + + Sbjct: 377 GSWDFNLKTEAFISSDNVFRMSGLDPKTAAPSYALWLEQIHSDDRERVEQKLQEAIQN-Q 435 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + L + + + + + ++ L + + ET+ Sbjct: 436 TPLEVKYRVVHPKGHICWILSKASFICDQTGQATRMLGIWMDITAQKETEFALKQGKETL 495 Query: 327 DK----CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI----------AGGLSTLLD 371 P V A+ +L K S D ++ + Sbjct: 496 KLFFKYVPAGVVVVDRNMCYLMASQRWLDDYKISSDDTLQGHSLYQIVPEIPPKWRQIHQ 555 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQ 430 + RSD T + N + + + F + E Q Sbjct: 556 LCVKGATEKCDEELFIRSDGTEQWLRWEIVPWYDNLGKEAGIIIFTENISERKQAEIALQ 615 Query: 431 NG---------------------IEPEDVDTRINKRKMEIEVMQLCSILEATSD---GIA 466 IE E ++ + +R++ L A SD G+ Sbjct: 616 ELNSQLEQRIIERTEQLQRAKKNIEQELLERKKLERELRKREQLLDGFFNAASDAKVGMC 675 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 I + L N+A++ + GY +ED L + L + ++ + LE Sbjct: 676 INDLNFRFLKINQALADINGYSIEDHLGRNLDDVL-PELAPTLKPLWENVIDSNQPINLE 734 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + + + + + + + +I+E K+ + + + + Sbjct: 735 ISAVVPSSRGVMRYWSVAYFPILAENENLIGIGAVVIEITESKRLELE----QAKLIEIL 790 Query: 583 SHKSDFLARVS 593 D +A S Sbjct: 791 EATPDIIATAS 801 Score = 89.3 bits (220), Expect = 3e-15, Method: Composition-based stats. Identities = 42/417 (10%), Positives = 112/417 (26%), Gaps = 15/417 (3%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNK 239 +V + + R + ++ + L ++ I L + Sbjct: 221 LVRQQQEELIRRREIETELRQQTQLLDLSDEAIIALNINRKIIYWNRGAERLYGWTKEEA 280 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + E + E E+ + + + +++ Sbjct: 281 LGQKIESMLQTQFPISLEAAHQTIIEQEYWEGELLHIRRDGQPLIVESRQVLQRDSKGNP 340 Query: 300 FEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354 L + +E E T++ I + ++ F ++ + ++ Sbjct: 341 EIILETNRDLTRRKQLEENLKINEERLRLTLELTGIGSWDFNLKTEAFISSDNVFRMSGL 400 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 L SD+ L + + + + + Sbjct: 401 DPKTAAPSY----ALWLEQIHSDDRERVEQKLQEAIQNQTPLEVKYRVVHPKGH-ICWIL 455 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 +Q + GI + + + ++ L + G+ +++R Sbjct: 456 SKASFICDQTGQATRMLGIWMDITAQKETEFALKQGKETLKLFFKYVPAGVVVVDRNMCY 515 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 L ++ + +D L+ + P + + E++ + S Sbjct: 516 LMASQRWLDDYKISSDDTLQGHSLYQIVPEIPPKWRQIHQLCVKGATEKCDEELFIRSDG 575 Query: 535 EEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 E+ L I+ L + + +ISE KQ + L E+ +++ L Sbjct: 576 TEQWLRWEIVPWYDNLGKEAGIIIFTENISERKQAEIALQELNSQLEQRIIERTEQL 632 Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 7/166 (4%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 Q + Q + + + I +R++E E+ Q +L+ + + I +N I+ NR Sbjct: 211 QVAIAIQQALLVRQQQEELIRRREIETELRQQTQLLDLSDEAIIALNINRKIIYWNRGAE 270 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L+G+ E+ L + L+ P + I+ + E L ++ + L + Sbjct: 271 RLYGWTKEEALGQKIESMLQTQFPISLEAAHQTIIEQ---EYWEGELLHIRRDGQPLIVE 327 Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 S T D++ KQ + L ++ Sbjct: 328 SRQVLQRDSKGNPEIILETNRDLTRRKQLEENLKINEERLRLTLEL 373 >gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278] gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding domain (C-term) [Bradyrhizobium sp. ORS278] Length = 774 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 131/685 (19%), Positives = 257/685 (37%), Gaps = 75/685 (10%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKK----GHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 + D A + L L H V + I ++ L +++ Sbjct: 90 HIAMRPDRIANIEHLQALLPDLIPAWGSAPGRHVIVTGADHRILARVPVDTGLGENDRIL 149 Query: 242 SL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 L T + L + + + + ++ + + Sbjct: 150 DLISTAQLLATPGLQGAVTEITLPNGRPAFAVSQLIKALPGRVVVIQEKLEPIWGSDAAL 209 Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340 L D +++ + + G Sbjct: 210 SITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGR 269 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 +F++N S + + D+ G ++ L+++ + ++ + Sbjct: 270 IFWSN-SMFAMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVA----GELRHID-QS 323 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 ++ + + + + GI + + + K ++L +E Sbjct: 324 FRMRHTEGHWIWLRVRCELSQGTTDSGLHLIGIAVDVTEQKSLVEKTVEADLRLRDAIET 383 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519 S+ + + ++ N KL P + + +E + L + Sbjct: 384 ISEAFVLWDSNNRLVLCNSHFQKLHKLPDSAVTPGTSYETVIEVGKMPEIRTRLHDNSQQ 443 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------- 571 + + L + ++ Y DI+ K+ + KL Sbjct: 444 AQGG---RTFEAQLDDGSWLHIS---ERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLR 497 Query: 572 ---------------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 S K AE+ + KS FLA +SHE+RTPL AII Sbjct: 498 ATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLNAII 557 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 GFSE++ + FG LG+ +Y EY + I SG +L+++ND+LD+SKIE+G+M L EP+ L Sbjct: 558 GFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDL 617 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + ++E++ +V A +K +++ NIP ++AD R+ KQI +N+LSNA+ FTP GG+ Sbjct: 618 AKTLAESLRVVSGRAQDKSLVLDADIEGNIP-VIADRRATKQIMVNLLSNAVKFTPEGGR 676 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + + +V+L + DTG+G+ L + +PF Q+ + G+GLGL +A+++ Sbjct: 677 VTMRSRVFED-KVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSL 735 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809 + G + S GT++ + P Sbjct: 736 AQLHGGSMRLRSRLEHGTVVRVTLP 760 >gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus sp. 7L76] gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141] gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645] Length = 609 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E +L Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K IR F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KRDLWVELDTDKVIQVFDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 37.7 bits (86), Expect = 7.7, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium Y4I] Length = 755 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 104/456 (22%), Positives = 187/456 (41%), Gaps = 32/456 (7%) Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPE 436 + V L T +A A LH+ W R +S + + + Sbjct: 154 HRPSAFVRLAVYAVTPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGWALYFASRNFD 213 Query: 437 DVD-----TRINKRKMEI----------EVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + +E E +L + E +D +++REG L N A Sbjct: 214 ITRANLLAQAQQQEALEAANASLKVQRAEARRLALVAENANDITRLLDREGRTLWANDAF 273 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLS 540 +++ GY + + K + P L I + L L +K+ + Sbjct: 274 TRVTGYTLAEAKGKLLGDLIR--DPDTSLEVLARISEARQAGRPLRVEILNRSKDGRTFW 331 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L + + Y DI+ K + +L A+ AE+ + K+DFLA +SHEI Sbjct: 332 LETNQVPMLDACGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEI 391 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ +IG ++++++ N YA I S + +L ++ND+LD+SK+++ ++ Sbjct: 392 RTPMNGVIGMAQLLRDSGL----NEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVS 447 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 L + + L++ A K + + +P R+ D R ++QI LN+ NA Sbjct: 448 LSCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQILLNLAGNA 507 Query: 716 IHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 I FT G Q+ ++ + ++ V DTG+G+ L K + F Q + R Sbjct: 508 IKFTERG-QVQVTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRFG 566 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL +++ + +A G + S G+ + Sbjct: 567 GTGLGLAISRRLAEAMGGSISVASDLGIGSCFTVRL 602 Score = 62.7 bits (151), Expect = 3e-07, Method: Composition-based stats. Identities = 18/248 (7%), Positives = 53/248 (21%), Gaps = 11/248 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGK 146 +D G ++ + G + G L D+ ++ I + + + Sbjct: 260 LDREGRTLWANDAFTRVTGYTLAEAKGKLLGDLIRDPDTSLEVLARISEARQAGRPLRVE 319 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G ++ +P+ + I ++ Sbjct: 320 ILNRSKDGRTF--WLETNQVPMLDACGRVDSY--VAIERDITAAKLHEQELEKARIAAEE 375 Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 K + + + + + D L + Sbjct: 376 GARAKADFLATMSHEIRTPMNGVIGMAQLLRDSGLNEEQELYAGAILSSADTLLALINDV 435 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + T + + L+ ++ L + A + Sbjct: 436 LDVSKMDAEGVSLSCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRR 495 Query: 322 TPETVDKC 329 + + Sbjct: 496 IRQILLNL 503 >gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1000 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 113/657 (17%), Positives = 224/657 (34%), Gaps = 37/657 (5%) Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 F GF+ G+ R + L + ++ L G K +F + L Sbjct: 195 FLGFQLHGLAE--RFRSAAEQLRESEERWNFALEGAGDGVWDWNLAKGTLFLSRKWKEML 252 Query: 235 RMKNKVSSLT------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + D L+ + Sbjct: 253 GFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLRKDGTACWILDR 312 Query: 289 FGTL-QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGNLF 342 + ++ ++ + +E + E T+ G + Sbjct: 313 GRVVARDAEGNPVRFIGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVT 372 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 NP LT + I ++ + + + PV ++ S Sbjct: 373 LMNPVAEKLTGWTQSSAIGKPVSAVFVIISA-TTKQSLPSPVEEVLRTGRTVSLSNDTTL 431 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + + E + + KRK+ + + L+ Sbjct: 432 VSRSGREFQ-IADSAAPIHDASGEMSGVVMVFTDVTQQYRFKRKLAESEHRFRTALDEAP 490 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 + + + G +L NR S L GY + L + + Sbjct: 491 FPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKDLSDPEIDPESRF------SGQA 544 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTM--HDISEWKQEKNKLSHAKKIA 578 ++ + + L + + + +L + + D++ + L +KK A Sbjct: 545 RSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAA 604 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E ++ K++FLA +SHEIRTPL I+G +++ + + +Y + S + Sbjct: 605 ESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVSNAISSSGRLS 660 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 +++D+LD+S+IE+G + L E V+ E + L L ++ + + +P+ I Sbjct: 661 QLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGLPQHI 720 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYE 752 L D ++QI N++ NA+ FT G I + + + +++ V DTG+G+ Sbjct: 721 LLDGGRLRQILFNLVGNALKFTEKG-HIHVRLDELAIHGGMRQLLLISVEDTGIGIPQGA 779 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + PF Q+ S R G GLGL + + +V A G I S +GT I + P Sbjct: 780 MRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836 Score = 72.0 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 34/374 (9%), Positives = 80/374 (21%), Gaps = 32/374 (8%) Query: 96 KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLWP 151 +S + + +G +++ ++ ID I L + + + Sbjct: 242 LFLSRKWKEMLGFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLR 301 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEI 210 +GT ++ + R G + + L I Sbjct: 302 KDGTACWILDRGRVVA-RDAEGNPV--RFIGTHTDITAQKLSEESARASGENLAVTLSSI 358 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNK------------VSSLTEYYAHKDDVLKTEK 258 + +++ + S T + V + + Sbjct: 359 GDAVIATDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLR 418 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 S + + S + E Sbjct: 419 TGRTVSLSNDTTLVSRSGREFQIADSAAPIHDASGEMSGVVMVFTDVTQQYRFKRKLAES 478 Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E+ +D+ P P ++ G++ N + LLT Y+ I + D Sbjct: 479 EHRFRTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKD---LSDPEID 535 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + +D I+ + E + Sbjct: 536 PESRFSGQARSTDGE--------QNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDV 587 Query: 438 VDTRINKRKMEIEV 451 R ++ Sbjct: 588 TVQSETMRALQRSK 601 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 6/248 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144 D G + ++ K G IG + V I+ + + ++L+ T Sbjct: 365 TDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLRTGRTVS 424 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + I +A PI+ + E SG + + + +F Sbjct: 425 LSNDTTLVSRSGREFQIADSAAPIHDASGEMSGV--VMVFTDVTQQYRFKRKLAESEHRF 482 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + D+ L T + + + + Sbjct: 483 RTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKDLSDPEIDPESRFSG 542 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + S +++ + T L + ++ + + + Sbjct: 543 QARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKK 602 Query: 325 TVDKCPIP 332 + Sbjct: 603 AAESANAA 610 >gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437] Length = 600 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 82/413 (19%), Positives = 166/413 (40%), Gaps = 30/413 (7%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSI 457 + + + + + + + + ++ + + + E QL SI Sbjct: 207 IQMKRGAERMARGEFSARVPVRSHEWDEIGDLAVAFNRMAGQLEESIQALSREKEQLASI 266 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 L + +DG+ ++ +G ++ TN K E+ + PS + + ++L Sbjct: 267 LRSMADGVITLDAKGHVIVTNPPAEKFLSDWREEGGGSLW--------PSPLEQFFHQVL 318 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + + G T + L ++ + D++E ++ Sbjct: 319 EGEREVFGDIDVHGRTWALVMAPLYAGPDEIR---GAVAVLRDVTEERRM---------- 365 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 + DF+A VSHE+RTPL+ + G+SE + + E I + Sbjct: 366 ----DKLRKDFVANVSHELRTPLSMLQGYSEALLDDI--AASPEDQREITRVIHDESLRM 419 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +V +LLD++++E+G + L V + E + Q A E+++ ++ + + + Sbjct: 420 GRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMDPV 479 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D V+Q+ N+ NAI TP GG++ + V L V DTG G+ +L Sbjct: 480 QWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALFAEKG-VQLIVEDTGSGIPQEDLPFVF 538 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + F + ++ GTGLGL + K + +A+ G + S +GT + P+ Sbjct: 539 ERFYKADKARTRGQGGTGLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLPV 591 >gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1965 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 119/802 (14%), Positives = 248/802 (30%), Gaps = 88/802 (10%) Query: 86 TWN-IDAHGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHID-PNNHIGDLLKRQN 141 W + A + S+E + +G V + L Sbjct: 1042 MWQWLKAENRMI-WSDETFRMLGYEPGQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENC 1100 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 Y + + +G+ + Y + +G G I +R + Sbjct: 1101 PLYSEYRVCLPDGSIR--WLADIGQVTYDEAGDQTGTIGIQI--DISQRKQSELERERSE 1156 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTEYYAHK 250 + ++ ++ V ++ + Sbjct: 1157 AILNAFLTASPIALTLLDRDLRFIYANEALAAVNGLPLSEHLGRTLEEVVPTMAPQFGPM 1216 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + P+L E + Sbjct: 1217 LRQIIATQTPVLNLE---FSGEVQPGLYRQTIANHFPVCLPDGEVLGVGVTVTDISELKR 1273 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTL 369 + A + E + + + +P + + Y+ + E L Sbjct: 1274 VEAELRQSEERLSLALKAANQGLYDLNLQTGQAIVSPEYARMLGYEPEELEETTARLRDR 1333 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L L+ + + + T R TI ++ +Q + Sbjct: 1334 LHPDDLATVDRVYQEYVANLH-TEYRVEFRQRTIT--GGWVWILSIGKIVNWDQDGNPLR 1390 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL----- 484 G + D + ++ ++ +L + + T + +++ + + N+ +L Sbjct: 1391 MLGTHTDISDRKQAEQALQQHSERLNLLYQTTRE---LLSAKQPLDLMNQLFERLSAQMQ 1447 Query: 485 ------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 F + + ++ + + + L + + + + Sbjct: 1448 LHYYYHFKLCMREGRQQLRLMNYSGLSVEQAEEFAWIELGQSMCGLVAQERRQIVLNQTD 1507 Query: 539 LSL-------------------------------RIIIKKLPFSSCYSLTMHDISEWKQE 567 ++ + + F+ + ISE Sbjct: 1508 IAAHANAHKICLMGVSAYVGHPLIVNGQLLGTLSFASLTRTQFTPAEVNLLQAISEQVAI 1567 Query: 568 KNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + L + + + K +FLA +SHE+R+PL I+G+++++++Q F P Sbjct: 1568 ALERAELVASLEQQTEDLARANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQSFSP--- 1624 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + + I+R+ L ++ DLLD+S+I GKM L+ V+L + A+ V+L A Sbjct: 1625 DKAAKALATIERNAKLQAQLIEDLLDVSRILQGKMVLNVTSVNLGSVIEAALETVRLAAE 1684 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I + T I IL D ++QI N+L+NA+ FTP GGQ+ + L+ Sbjct: 1685 AKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNAVKFTPQGGQVTVRLQRVDT-FAQLQ 1743 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPA 799 V+DTG G++ L F Q + + G GLGL + + + + + G S Sbjct: 1744 VQDTGKGISPAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEG 1803 Query: 800 KGTLIEIIFPLY----DTSHPH 817 G I PL +T+ P Sbjct: 1804 LGATFTIRLPLQAKATETADPQ 1825 Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 75/643 (11%), Positives = 166/643 (25%), Gaps = 58/643 (9%) Query: 44 PCHDSFEQS---NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100 P + D Q SE + + W DA G + Sbjct: 872 PSASQPYDHVLVSLLDITQRKQVEAALQASEERYRHLAEAMP-QIVWTTDAQGLATYFNP 930 Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYV 159 G A + +G+ + D ++ ++ + L +G +Y Sbjct: 931 NWYGYTGLTAAESMGLESPNALHPEDRDRVLQQWLQAVEAGTSYEIEIRLRRWDG--VYR 988 Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVE 218 LP+ E G +A + +++ S L + G Sbjct: 989 WFLCRGLPVRDPRGEII--SWVGTNTDIDDQKHIQAALHQSEERLSLALRSAQAGMWQWL 1046 Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTEKYPLLTSEESSLPEQE 273 K + + L + S + D + + +E L + Sbjct: 1047 KAENRMIWSDETFRMLGYEPGQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENCPLYSEY 1106 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----C 329 + + + + + + + S + + ++ Sbjct: 1107 RVCLPDGSIRWLADIGQVTYDEAGDQTGTIGIQIDISQRKQSELERERSEAILNAFLTAS 1166 Query: 330 PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 PI + YAN + + + + + ML + Sbjct: 1167 PIALTLLDRDLRFIYANEALAAVNGLPLSEHLGRT-------LEEVVPTMAPQFGPMLRQ 1219 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 T + + F E + + + + + ++ Sbjct: 1220 IIATQTPVLNLEFSGEVQPGLYRQTIANHFPVCLPDGEVLGVGVTVTDISELKRVEAELR 1279 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTP 506 +L L+A + G+ +N + + +++ GY E++ L + Sbjct: 1280 QSEERLSLALKAANQGLYDLNLQTGQAIVSPEYARMLGYEPEELEETTARLRDRLHPDDL 1339 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDI 561 + ++ E ++ L T + + + + T DI Sbjct: 1340 ATVDRVYQEYVAN-LHTEYRVEFRQRTITGGWVWILSIGKIVNWDQDGNPLRMLGTHTDI 1398 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S+ KQ + L + + L+ + PL + NQ F L Sbjct: 1399 SDRKQAEQALQQHSERLNLLYQTTRELLSA-----KQPL--------DLMNQLFERLSAQ 1445 Query: 622 RYIEY---ANYIDRSGNLVLDI-------VNDLLDISKIESGK 654 + Y R G L + V + + IE G+ Sbjct: 1446 MQLHYYYHFKLCMREGRQQLRLMNYSGLSVEQAEEFAWIELGQ 1488 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 59/538 (10%), Positives = 149/538 (27%), Gaps = 33/538 (6%) Query: 72 NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131 F F + + + ++++ + G + L + Sbjct: 778 EDFAQYLAEHP-EFVRQMASSVRIHDVNQAALQMFGAKDKAELLSSLNQIFVPETEAAFI 836 Query: 132 HIGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDL---AALPIYSRNREFSGFRGFGIVHVN 187 + T + +T + ++G L V + +A Y + Sbjct: 837 GELLAIAEGKTYFAAETVVQTLQGERLRVWFTITFPSASQPYDHV--------LVSLLDI 888 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLT 244 A + ++++ HL E + L + + Sbjct: 889 TQRKQVEAALQASEERYRHLAEAMPQIVWTTDAQGLATYFNPNWYGYTGLTAAESMGLES 948 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 H +D + + L E + E E + +++ E ++ Sbjct: 949 PNALHPEDRDRVLQQWLQAVEAGTSYEIEIRLRRWDGVYRWFLCRGLPVRDPRGEIISWV 1008 Query: 304 SHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 + A + E + + + N + + Y+ Sbjct: 1009 GTNTDIDDQKHIQAALHQSEERLSLALRSAQAGMWQWLKAENRMIWSDETFRMLGYEP-- 1066 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 D+ AI + RS + + + + + I Sbjct: 1067 --GQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENCPLYSE-YRVCLPDGSIRWLADIGQ 1123 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ + GI+ + + ++ + E L + L A+ + +++R+ + N Sbjct: 1124 VTYDEAGDQTGTIGIQIDISQRKQSELERERSEAILNAFLTASPIALTLLDRDLRFIYAN 1183 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A++ + G P+ + L + + L +I++ L G + Sbjct: 1184 EALAAVNGLPLSEHLGRTLEEVV-PTMAPQFGPMLRQIIATQTP-VLNLEFSGEVQPGLY 1241 Query: 539 LSLRII--IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 LP +T+ DISE K+ + +L +++ + L + Sbjct: 1242 RQTIANHFPVCLPDGEVLGVGVTVTDISELKRVEAELRQSEERLSLALKAANQGLYDL 1299 Score = 120 bits (302), Expect = 8e-25, Method: Composition-based stats. Identities = 38/552 (6%), Positives = 114/552 (20%), Gaps = 71/552 (12%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLL--KRQNTWYGK 146 + ++ +G + ++ M ++ ++ + G Sbjct: 498 EQRNVYTNRQITDFLGYTSEQVQAMGANAIATLIHPDDLEQILSYFAAFQHAADDVVLGI 557 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + + + G I + + Sbjct: 558 EYRAHHANGEWRWMYSQSVVFNRTVDGIPRQLLGVAI--DITDRKRSEQALQESEAWTRL 615 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 ++ + + ++ P + + + + A ++ V Sbjct: 616 AAQVAQLGGWRLHLETNLVEIDQRMGQIWGEPENTVLLPLPIVLERIHPADRERVTHAVT 675 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYT-------KKQYFGTLQNNSKESFEYLSHRNHPSL 311 L + + ++ + + GT + L + Sbjct: 676 AALDPQSLGVYETEYRIVWKDGSERWVLAKGQARFEGEGTARRTVDFFGTALDITDRKQA 735 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHG-------------------------------- 339 A E + + + Sbjct: 736 EAALAAQEQRYRYIFESVSVAIWEEDFSAVKAAINQLQGSGIEDFAQYLAEHPEFVRQMA 795 Query: 340 ---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + N + L + K ++ + L+ + + A L Sbjct: 796 SSVRIHDVNQAALQMFGAKDKAELLSS------LNQIFVPETEAAFIGELLAIAEGKTYF 849 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 +A E I F A+Q + + + ++ + Sbjct: 850 AAETVVQTLQGERLRVWFTITFPSASQ--PYDHVLVSLLDITQRKQVEAALQASEERYRH 907 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + EA + + +G+ N G + + L + + Sbjct: 908 LAEAMPQIVWTTDAQGLATYFNPNWYGYTGLTAAESMGLESPNALHPEDRDRVLQQWLQA 967 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + E + + + T DI + K + L Sbjct: 968 VEAGTS--YEIEIRLRRWDGVYRWFLCRGLPVRDPRGEIISWVGTNTDIDDQKHIQAALH 1025 Query: 573 HAKKIAEKESSH 584 +++ Sbjct: 1026 QSEERLSLALRS 1037 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 57/558 (10%), Positives = 128/558 (22%), Gaps = 66/558 (11%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145 W L + G +IG + + L P H D++ + Sbjct: 370 WQDPGSFRLLLANPAASAATGFDFEPVIGRTMAESFPHLLQTPLVQHYLDVVHTGRSLDL 429 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G + L A P+ G + + + Sbjct: 430 GEVSYSEDGIATGIY-SLKAFPL-------PGHCLGLAFENITPRKQIESQLQESQRFNQ 481 Query: 206 HLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + E G V + F + M + + + +L Sbjct: 482 QIAEAMPGVVFVHDLVEQRNVYTNRQITDFLGYTSEQVQAMGANAIATLIHPDDLEQILS 541 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-----YLSHRNHPS 310 +++ L + H N + + Sbjct: 542 YFAAFQHAADDVVLGIEYRAHHANGEWRWMYSQSVVFNRTVDGIPRQLLGVAIDITDRKR 601 Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E E T + + ++ NL + + + + Sbjct: 602 SEQALQESEAWTRLAAQVAQLGGWRLHLETNLVEIDQRMGQIWGEPENTVLLPLPIV--- 658 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L+ +D + + D + + I W + + + Sbjct: 659 LERIHPADRERVTHAVTAALDPQSLGVYETEYRIVWKDGSERWVLAKGQARFEGEGTARR 718 Query: 430 ---QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----------REG---- 472 G + D + + + + + I E+ S I + +G Sbjct: 719 TVDFFGTALDITDRKQAEAALAAQEQRYRYIFESVSVAIWEEDFSAVKAAINQLQGSGIE 778 Query: 473 --------------------IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 I N+A ++FG + L T + Sbjct: 779 DFAQYLAEHPEFVRQMASSVRIHDVNQAALQMFGAKDKAELLSSLNQIFVPETEAAFIGE 838 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKL 571 L I E + E + I +++ DI++ KQ + L Sbjct: 839 LLAIAEGKTYFAAETVVQTLQGERLRVWFTITFPSASQPYDHVLVSLLDITQRKQVEAAL 898 Query: 572 SHAKKIAEKESSHKSDFL 589 +++ + + Sbjct: 899 QASEERYRHLAEAMPQIV 916 >gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396] gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396] Length = 905 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 23/373 (6%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++ +L +I E T DG+ + EG I + N AV LFGY ++ V + Sbjct: 552 ERTAELKHSEQRLRAIYEHTPDGMLTVTEEGNITAVNPAVENLFGYACSNLAGLNIRVLI 611 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMH 559 S + + L+ G + + L + L ++ Y + Sbjct: 612 PDYQASTVESSQESVALNTGPGYLQ----GLRRNGQDFPLELQTVCLSQTTPASYLCIVR 667 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E + + K +F++ +SHE+RTPLTAI G + + + Sbjct: 668 DVTERAEAE--------------RIKDEFISTISHELRTPLTAINGSLA-LLDAKVAMAA 712 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + + R+ + +L++VN +LD+ K+ SG+M L +L + VS+ ++L Q A Sbjct: 713 PDKQAQMIGIARRNTDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLA 772 Query: 680 NEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + ++ + + AD + Q+ N++SNA F+P +I++S T + Sbjct: 773 HNADVSFSLQIPSDCVIVVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTLEDSI-AR 831 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V D G G+ L + F Q +S GTGLGL ++KA+++ + GK + P Sbjct: 832 VSVTDKGPGVPPEFLNRIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNP 891 Query: 799 AKGTLIEIIFPLY 811 G P + Sbjct: 892 GGGCTFYFELPAH 904 >gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030] gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus Peru-466] gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AN-5034] gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 873 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 12/376 (3%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 L S+ + L TK ++ + + + + + + DI+ Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDIT 352 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +S N ++ I+ND+LD SK+E+GK+ L E L V +L A++K Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + ++ D + QI LN++ NA+ FT G +++ + V Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESELGF-DFSV 526 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L M F Q+ S R EGTGLGL ++K ++ G+ + S G Sbjct: 527 TDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNG 586 Query: 802 TLIEIIFPLYDTSHPH 817 + L S PH Sbjct: 587 SCFSFSLQLPKRSQPH 602 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148 G + ++ + +++G ++ D N + ++ + + Sbjct: 257 PDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +V ++L+ P++ N E R + + K Sbjct: 317 NYTKSQRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E + + + G + + N +F LT+Y + + + G LL D + Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A +L +S R+ + ++ + ++ E + +E + D Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPY-WVELELSPVFDENGELLRFIAVERDITD 353 Query: 440 TRINKRKMEIEVMQ 453 R ++++ + + Sbjct: 354 RREMEKRLSSALDK 367 >gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 949 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 95/491 (19%), Positives = 182/491 (37%), Gaps = 25/491 (5%) Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 V G + N + D I L + + Sbjct: 336 ALLVDFDGTILALNKAVARAFGTTP-DKIAGCSAFKFL---------EWERFEYFMVKVQ 385 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + L + + P + + + + + + ++ Sbjct: 386 EVLCTGKPLRFNENVGNVHFDVQVSPVVEPS--GKAFQAVFYLNDITEVVQAEEELHRSW 443 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +LC+++++ + + G + N+ ++ GY E++L P + + Sbjct: 444 ARLCAVVDSMPVLVHAHDEAGNFVFWNKESERVLGYTAEEMLNNPDAFEILYTEKGLRKK 503 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKN 569 L D + + K + + + + D++E K + Sbjct: 504 ALKCWADYDGKTPCTLEVKDKSGCIKTIEWHRLSSNYPIAGWKDWEAGL-DVTEKKAGER 562 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A EK + KS FLA +SHE+RTP++ +IG S ++ + Sbjct: 563 QLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKTS----ADDDQKRMIQN 618 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +L I+N++LD SK+ESG +L LD + + EK + + Sbjct: 619 IANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAALCSQVQEKNVEFKVL 678 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDT 744 +++P + D S+K+I +N+ +NA+ FT +G +I+ + E++ V DT Sbjct: 679 IEDDVPVHLRGDGYSLKRILVNLTANAVKFTDAG-NVILRASLLNRSKDRLEILFVVFDT 737 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 GVG+ E +PF Q R GTGLGL + K++V+ G ++ STP +G+ Sbjct: 738 GVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGGHIWMESTPGEGSSF 797 Query: 805 EIIFPLYDTSH 815 + P Sbjct: 798 FVRIPFEPAEA 808 Score = 85.1 bits (209), Expect = 5e-14, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 91/317 (28%), Gaps = 44/317 (13%) Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-------------E 361 ++ E + V P F++ + Y +P + ++ + +D + + Sbjct: 153 LEQTEKIFLHLVQYIPSVFWLREKNRMLYVSPGYEMIWG-RPLDALFNDMEHFYRSVHVK 211 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS----------- 410 L S ++ + R + R + I + Sbjct: 212 DLDWAFKCLHEDFFSKHSIELEFRIVRPEGAVRWVRIRSYPIFEDGSVVRRAGIAEDITS 271 Query: 411 ----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 K + +E + D + +K+ S +++ Sbjct: 272 EKAMLGELDRYRFHLDEMVKEKTVRLSCLNQILENDVEDRKKLHKKLIKSNALFRSFVDS 331 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 +++ +G IL+ N+AV++ FG + I FLE + E+L Sbjct: 332 FIHPALLVDFDGTILALNKAVARAFGTTPDKIAGCSAFKFLEWERFEYFMVKVQEVLCTG 391 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIA 578 + +++ P + +DI+E Q + +L + Sbjct: 392 KPLRFNENVGNVH-----FDVQVSPVVEPSGKAFQAVFYLNDITEVVQAEEELHRSWARL 446 Query: 579 EKESSHKSDFLARVSHE 595 + +H+ Sbjct: 447 CAVVDSMPVLVH--AHD 461 >gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061] gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061] Length = 612 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 87/434 (20%), Positives = 169/434 (38%), Gaps = 32/434 (7%) Query: 392 TCIAASARLHTIQWNRENSLAMT--FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-- 447 H I R+ ++ + + + + Q + + + ++ Sbjct: 200 GIFIFRTITHPISDMRKQAIELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEEAQLMT 259 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S++ +DG+ N+ G I+ N +L E L P T L Sbjct: 260 EGERKKLSSVIAYMTDGVIATNQNGAIILLNSPALELLNVSRETALEMPITSLLGLEDTH 319 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565 + +E + +L + + + ++D++E + Sbjct: 320 TFEDLVEN----QDSMLIEIE---REDQLSVLRVNFSVIQKEHGKIDGLIAVIYDVTEQE 372 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + +F+A VSHE+RTPLT + + E + G Sbjct: 373 KIDAE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPR 416 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + ++ +VNDLL +SK +S + E + + +S I + E+ + Sbjct: 417 FLSVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWTNFIKFISLVIDRFE-MTKEQHVD 475 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDT 744 + + D + Q+ NI+SNA+ ++P GG I + N V+ V+D Sbjct: 476 FIRNLPQREIYVEIDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEENGLVLFSVKDE 535 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +++K + F ++ ++ + GTGLGL +AK MV A+ G + S KGT + Sbjct: 536 GIGIPKKDMDKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTV 595 Query: 805 EIIFPLYDTSHPHD 818 P Y+ D Sbjct: 596 TFTLP-YNEEQEDD 608 >gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 1050 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 180/388 (46%), Gaps = 23/388 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ + + QL ++ +A D I+ R+G+I+ + S L + L Sbjct: 402 EARQALAVSEAQLRALRDAMPDMFFIMRRDGMIIDYHCPASAQLFIQPSAFLGQNVVDVL 461 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + L ++ + + T E + + I+ Y + + DI Sbjct: 462 PPDVSQPALTALDQVSTGKVIATFEYCLSMEEERNFEARVVHIVA-----DRYMVLVRDI 516 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ K + L AK+ AE KS FLA +SHEIRTPLTAIIG S ++ NP Sbjct: 517 TQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLESPL----NP 572 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 E A I+ G +L ++ D+LD+SKIE+G+++L +P L A+ LVQ A++ Sbjct: 573 EQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLVQQSAHD 632 Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEE 736 KR+ + ++P ++ D ++Q+ +N+L NA+ FT G + + Sbjct: 633 KRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQG-VVELIVRGHFQAEERYH 691 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTGVG+ ++E+ KPF QI + + G+GLGL +++ +V+ G + S Sbjct: 692 VEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGTLEVSS 751 Query: 797 TPAKGTLIEIIF--------PLYDTSHP 816 T GT + P+ SHP Sbjct: 752 TLGVGTTFTLTISMEVAEIAPVRHDSHP 779 >gi|83950384|ref|ZP_00959117.1| PAS [Roseovarius nubinhibens ISM] gi|83838283|gb|EAP77579.1| PAS [Roseovarius nubinhibens ISM] Length = 1083 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 127/798 (15%), Positives = 250/798 (31%), Gaps = 103/798 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D + ++ A + G+ D+ + D + R+ W + Sbjct: 300 LDEEYRMVLFNQPYLDLHDKIADAIKPGVYFKDILALGI--ERGQFPDAVGREEEWLAEQ 357 Query: 148 TLWP-IEG--------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 P +G +V I P N G R V A Sbjct: 358 LKPPGEDGNDFEVAFSGGRWVRIYEKGTP----NGGLVGLRSDITRQVETRYRAEVAEQL 413 Query: 199 R--LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDDV 253 E + + + + V + + Sbjct: 414 AQKSKDLLMTAIETLPDAFVLYDAEDRLVVCNRKYKEFYKKSAEAMVPGARFVDILRFGL 473 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306 + L EE L ++ H + ++ + + Sbjct: 474 RHGQYPEALGREEEWLADRMASHRAADDIIEQQLDDGRCLRILERPTPDGGRVSLRMDVT 533 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG- 364 A ++ E + ++ P F++ L N +L L + + Sbjct: 534 ELVQSRARAEQAERRLRDAINAMPAGFWLTDGDRRLTMFNDYYLSLYEKSAPAIKIGVSE 593 Query: 365 ------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 GL + R D L +W R S + Sbjct: 594 EDVVAYGLERGEYPEAVGREEEWLAAHHKRMDGGEYQWEYPLQNGRWVRSYSHPTS---- 649 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------------EATSDG 464 + + GI + + + + ++ +L + L E ++D Sbjct: 650 --------DGGRVGIRVDITELKKQETQLLSSNEKLRTALSERDAAEKRFSDVAEISNDW 701 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLR 522 + + + +LFG + + +E + V + L Sbjct: 702 FWEQDADLRFTYISEGFERLFGGDTRKSIGMKISEIVEALSGLKEVADWELLFAAQDRRE 761 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578 + + + + ++I + Y DI+ L +A + A Sbjct: 762 TFRNLVYPALSSDRQPKWIQISGVPFYDDNGNFAGYRGVGTDIT-------VLYNALQEA 814 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----------------- 621 E + K+DFL +SHE+RTPLT I+G++ + Sbjct: 815 EAANVAKTDFLNVMSHELRTPLTVILGYNSFLAKPELLTSVKELREAASAGDLTATGAIE 874 Query: 622 -------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +YA ++ SG +L ++N++LD++KI++GK+ + + L+ V + Sbjct: 875 HLEAVQREVGKYAGKMEDSGKHLLKLINEMLDLAKIDAGKLKIDPVDLELERVVRSVLDQ 934 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A+EK + + + + AD ++QI +N++ NA+ FT G QI I Sbjct: 935 FSNAAHEKSVDLVGAIGE--LSVFADEMRLRQILINLVGNALKFTDKG-QIRIEAEVK-G 990 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 +V + VRD+G G+ E F QI +S GTGLGL +++ +V+ G+ + Sbjct: 991 ADVAIHVRDSGCGIPAKEQALIFDQFNQIDSSASRAKGGTGLGLTISRRLVELQGGRISV 1050 Query: 795 FSTPAKGTLIEIIFPLYD 812 S KG++ P+ + Sbjct: 1051 TSEEGKGSVFTFTLPMEE 1068 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 5/101 (4%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNT 142 W DA ISE + G K IGM++ ++ + L +LL R+ T Sbjct: 703 WEQDADLRFTYISEGFERLFGGDTRKSIGMKISEIVEALSGLKEVADWELLFAAQDRRET 762 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183 + + I ++ +P Y N F+G+RG G Sbjct: 763 FRNL-VYPALSSDRQPKWIQISGVPFYDDNGNFAGYRGVGT 802 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 16/151 (10%) Query: 442 INKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVE 490 + ++ +E Q L +++ SDG +++ E ++ N+ L G + Sbjct: 272 LRQQNLERRRAQVQLKLAVDSLSDGFILLDEEYRMVLFNQPYLDLHDKIADAIKPGVYFK 331 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 DIL + +L E L + + + + +K Sbjct: 332 DILALGIERGQFPDAVGREEEWLAEQLKPPGEDGNDFEVAF--SGGRWVRIY---EKGTP 386 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + DI+ + + + A+++A+K Sbjct: 387 NGGLVGLRSDITRQVETRYRAEVAEQLAQKS 417 >gi|301100816|ref|XP_002899497.1| hybrid signal transduction histidine kinase, putative [Phytophthora infestans T30-4] gi|262103805|gb|EEY61857.1| hybrid signal transduction histidine kinase, putative [Phytophthora infestans T30-4] Length = 2036 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 130/742 (17%), Positives = 263/742 (35%), Gaps = 67/742 (9%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHI-GDLLKRQNTW 143 + +D G + +++ + + +++G L + + + + L T Sbjct: 820 IFGVDKEGCVNIWNKKAAEIMQYSNDEVVGENLVEKFITEDYREAVGAVLSKALDGFETA 879 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P ++ + G G G RL +K Sbjct: 880 NFEFPLVTKAGR--RVEILLNATPRFNEHGTVIGMVGIG--QDITDRIAQEQEYARLIEK 935 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPL 261 + V+ E R + V +A + + L Sbjct: 936 ANAPI------FGVDSEGKINIWNHKTAEMTRFSKEEAVGKDLMSWAIPEQYRDAVETIL 989 Query: 262 LTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + E D T + + + + + ++ Sbjct: 990 WKALEGDETSNFDVELKKKTGRTVNIRMNATARFDQHGQIVGVVGIGQDITDRIVQEQE- 1048 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +D P F V ++ + N +TKY + + I L +P+ Sbjct: 1049 --YTRLIDTANAPIFGVDANLCVNIWNKKAAQITKYSTAEVIGEN--LVETFISPEYRPA 1104 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + ++ A+ I + + + + GI + Sbjct: 1105 VAD---VFSKALNGIQTANFEFPLITRPGTRIEIL-LNATPRNDMHGNIVGVVGIGQDIT 1160 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 D + E +++ + I ++ G + N+ + ++ GY +L Sbjct: 1161 DR------IAQEHEYFR-LIDTANAPIFGVDTFGCVNEWNQKIEEITGYHKSTVLGLSLV 1213 Query: 499 V-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553 F+ S + L + L E +T + L L + Sbjct: 1214 DAFINAENRSEVRKLLNQALIG--IDVGEMELPMTTAAGRSLLLLVNASSKKDMHGNIRG 1271 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D + K + + K +FLA SHE+RTPL ++G E++++Q Sbjct: 1272 VIGVGQDYTAKKHME--------------AAKVNFLASFSHELRTPLNGVLGMLELLRDQ 1317 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + Y + SG+L+L+++ND+LD+SKIE+G M + +P +++ + ++ Sbjct: 1318 KLDKTPE----RYVHIAYISGSLLLNLINDILDLSKIEAGHMEISADPFQMEDLLEYSVE 1373 Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + + A EK I ++ + +P R++ D+ ++Q+ LN+LSNAI FT G I + Sbjct: 1374 IFKFKAREKHIKLKLECSPKVPKRVIGDVSRLRQVLLNLLSNAIKFTNEGS-ITVRCNMV 1432 Query: 733 SNEEV-------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ + +V DTGVGM + E + F ++ +++ G+GLGL + K +V Sbjct: 1433 PSPDLPKHCVKLLFQVIDTGVGMDDEEKSRLFSLFTKLERTRKNNPTGSGLGLAICKQLV 1492 Query: 786 DANMGKFYIFSTPAKGTLIEII 807 + G + S +G+ Sbjct: 1493 ELMDGDIDVDSELGEGSEFFFT 1514 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 61/503 (12%), Positives = 138/503 (27%), Gaps = 32/503 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 + ID G + + + + G RL + + ++ I ++ + T Sbjct: 580 IFGIDMDGRVDIWNRKAVAITEYTVLEARGTRLVESFIPHDYRAGVSDVISKAMEGEGTA 639 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G V I L A P Y+++ E G G G RL Sbjct: 640 NFEFPLITKTGR--RVDILLNATPRYNQHGEIVGVVGIG--QDITERIVQEQEYSRLIDT 695 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + V M + ++ V L Sbjct: 696 ANAPIFGVDMAGLVNIWNDKSAEITQFTADEVMGKDLVQEFISEGYRSAVGLVLSQAL-- 753 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + T + + N E +S + ++ Sbjct: 754 NGVQTANFNFPLITKSGRRVEILLNATPRYNELGEIVGVVSIGQDITERIAQEQE---YS 810 Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +D P F V G + N + +Y + + + L++ D Sbjct: 811 RLIDTANAPIFGVDKEGCVNIWNKKAAEIMQYSNDEVVGEN-----LVEKFITEDYREAV 865 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 +L ++ A+ + + + N+ + GI + D Sbjct: 866 GAVLSKALDGFETANFEFPLVTKAGRRVEIL-LNATPRFNEHGTVIGMVGIGQDITDRI- 923 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFL 501 + + ++E + I ++ EG I N +++ + E+ + K + + Sbjct: 924 ------AQEQEYARLIEKANAPIFGVDSEGKINIWNHKTAEMTRFSKEEAVGKDLMSWAI 977 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557 + + L + L D + K + +++R+ Sbjct: 978 PEQYRDAVETILWKALEGDETSNFDVEL--KKKTGRTVNIRMNATARFDQHGQIVGVVGI 1035 Query: 558 MHDISEWKQEKNKLSHAKKIAEK 580 DI++ ++ + + A Sbjct: 1036 GQDITDRIVQEQEYTRLIDTANA 1058 Score = 133 bits (334), Expect = 2e-28, Method: Composition-based stats. Identities = 69/595 (11%), Positives = 169/595 (28%), Gaps = 56/595 (9%) Query: 18 CKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF--- 74 C+ +++ K+K G + + SK+ N H+ + S + Sbjct: 8 CRAHSKPSQKQK--PGRKKKASKQSNNNHEKVTAPPSATAGTRRSRRDSNCSSGSGIDAD 65 Query: 75 -----------VFDPIPRTVRF---------TWNIDAHGYLKEISEELPKTIGNYAFKMI 114 P F +D G + + +L + G + ++ Sbjct: 66 DRRPSIASATERISPGLHPRLFRILSEANAPALAMDMTGRVTFWNHKLAELCGLPSVDVV 125 Query: 115 GMRLCDV-SDILHIDPNNHIGDLLKRQN-TWYGKTTLW--PIEGTNLYVPIDLAALPIYS 170 G + ++ + D + N T YG P G N+ + ++L Sbjct: 126 GRPITELVTAHTTADVMRGLEQARSDINATVYGVEIELNTPELGRNVKLLVNLTV----D 181 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + + I V + + + E+ + Sbjct: 182 VDDKNKASSVVAIGQDVTVWMQGSQYALVAQQANAPIVELDRDGRITLWNPK-----AEA 236 Query: 231 PPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + + L + + VL E + S +S+ E E + + Sbjct: 237 LTGYAIDQVIGTPLVDLVHDEFQVLVAELLARVASTNTSVSELELPLKTASGARVELLFS 296 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347 T Q ++ E + VD P F V + G + N Sbjct: 297 LTPQATVDGVDTTVNRIVAIGQDVTARNASEMEHSKLVDSANAPIFGVDTEGCVVIFNKK 356 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 ++ Y + + + L + L + A + ++ R A+ I + Sbjct: 357 AAQISGYWPGEVMGVE--LVSFLIHEDYREKVA---AVFQKALRGIETANFEFPLITKDG 411 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + N + GI + + + +++ +++ + I Sbjct: 412 RRVEIL-LNATPRYNHAGAIVGVVGIGQDITERIVQEQE-------YNRLIDTANAPIVG 463 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++++ + N+ + L Y + K F+ ++ + L++ + E Sbjct: 464 VDKKFRVTIWNKKAATLTDYSYTQAIGKDLLGFIAEHARDTVADVLSKAMGGVETPNFEF 523 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + T + + L + + T D ++ + ++ + A Sbjct: 524 PLVTKTGRQLDILLNATPRFDHSGAITGVVGTGQDFTDQRAQEEEYIRLIDTANA 578 Score = 132 bits (332), Expect = 3e-28, Method: Composition-based stats. Identities = 53/505 (10%), Positives = 137/505 (27%), Gaps = 36/505 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143 + +D G + +++ + A +++G L +S+ + L T Sbjct: 700 IFGVDMAGLVNIWNDKSAEITQFTADEVMGKDLVQEFISEGYRSAVGLVLSQALNGVQTA 759 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 L G V I L A P Y+ E G G RL Sbjct: 760 NFNFPLITKSGR--RVEILLNATPRYNELGEIVGVVSIG--QDITERIAQEQEYSRLIDT 815 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPL 261 + V+KE + ++ V +D + L Sbjct: 816 ANAPI------FGVDKEGCVNIWNKKAAEIMQYSNDEVVGENLVEKFITEDYREAVGAVL 869 Query: 262 LTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + +F + + N + + ++ Sbjct: 870 SKALDGFETANFEFPLVTKAGRRVEILLNATPRFNEHGTVIGMVGIGQDITDRIAQEQE- 928 Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 ++K P F V S G + N +T++ + + + P+ + Sbjct: 929 --YARLIEKANAPIFGVDSEGKINIWNHKTAEMTRFSKEEAVGKDLMSWAI---PEQYRD 983 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L ++ + + +Q + + GI + Sbjct: 984 AVETILWKALEGDETSNFDVELKKKT---GRTVNIRMNATARFDQHGQIVGVVGIGQDIT 1040 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497 D + +++ +++ + I ++ + N+ +++ Y +++ + Sbjct: 1041 DRIVQEQE-------YTRLIDTANAPIFGVDANLCVNIWNKKAAQITKYSTAEVIGENLV 1093 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555 F+ + ++ L+ E + + L + + Sbjct: 1094 ETFISPEYRPAVADVFSKALNGIQTANFEFPLITRPGTRIEILLNATPRNDMHGNIVGVV 1153 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580 DI++ ++++ A Sbjct: 1154 GIGQDITDRIAQEHEYFRLIDTANA 1178 Score = 128 bits (322), Expect = 4e-27, Method: Composition-based stats. Identities = 48/498 (9%), Positives = 133/498 (26%), Gaps = 29/498 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D + +++ + IG L D + + + T + Sbjct: 464 VDKKFRVTIWNKKAATLTDYSYTQAIGKDLLGFIAEHARDTVADVLSKAMGGVETPNFEF 523 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L G + I L A P + + +G G G RL + Sbjct: 524 PLVTKTGRQ--LDILLNATPRFDHSGAITGVVGTG--QDFTDQRAQEEEYIRL--IDTAN 577 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 I + ++ + + + + H ++ E Sbjct: 578 APIFGIDMDGRVDIWNRKAVAITEYTVLEARGTRLVESFIPHDYRAGVSDVISKAMEGEG 637 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + T + N E + + ++ +D Sbjct: 638 TANFEFPLITKTGRRVDILLNATPRYNQHGEIVGVVGIGQDITERIVQEQE---YSRLID 694 Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P F V G + N +T++ + + + L+ + ++L Sbjct: 695 TANAPIFGVDMAGLVNIWNDKSAEITQFTADEVMGK-----DLVQEFISEGYRSAVGLVL 749 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ A+ I + + + N+ E + I + + Sbjct: 750 SQALNGVQTANFNFPLITKSGRRVEIL-LNATPRYNELGEIVGVVSIGQDITERI----- 803 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + + +++ + I +++EG + N+ +++ Y ++++ + Sbjct: 804 --AQEQEYSRLIDTANAPIFGVDKEGCVNIWNKKAAEIMQYSNDEVVGENLVEKFITEDY 861 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS 562 + +T TK + + + + DI+ Sbjct: 862 REAVGAVLSKALDGF-ETANFEFPLVTKAGRRVEILLNATPRFNEHGTVIGMVGIGQDIT 920 Query: 563 EWKQEKNKLSHAKKIAEK 580 + ++ + + + A Sbjct: 921 DRIAQEQEYARLIEKANA 938 >gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 576 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 120/529 (22%), Positives = 211/529 (39%), Gaps = 50/529 (9%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L I L I+ + AM + + I ++ + Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L EPV L+E +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731 +V+ A +RI ++ + + D R KQI N+L+NA+ F+ GG + ++ Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463 Query: 732 ---------------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 FAQAGVIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 EGTGLGL + K + + + G + S G + P+ P +C Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L + + + L + + R L D G Sbjct: 374 ILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431 Score = 45.0 bits (105), Expect = 0.054, Method: Composition-based stats. Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135 D HG ++ + + +G ++ ++ D+SD + P + Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 L R + T +G+ + ++ + G+ G N Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312 >gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 706 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 103/576 (17%), Positives = 203/576 (35%), Gaps = 36/576 (6%) Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + N + S + + Sbjct: 130 ETTLGGAPPRIGRPWVGRDLANATPSTGQPPPPRAASLIPVMHRFELDDTPYWWLAALNP 189 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + G + LL S DDI S + A Sbjct: 190 DDFIGHFSQL----LPIEEGRVQLL-RYDGLLLLSTSPDDIPGRPDQSGAVPARLERQEL 244 Query: 380 AIKPVMLYRSDRTCIAASARLH-----TIQWNRENSLAMTFIP------FEKANQFPENM 428 L A A + +R A + Sbjct: 245 GELAQTLADGHHVLTAYRASSRYPAVIAVHLDRGYIQAQWLREAGRLSMIVVPILAALSA 304 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + ++E + S+ EA+SD I + G ILSTN A ++ GY Sbjct: 305 AILLLWLRRRRLAQQRAELERQRRLTSSVFEASSDAIMLTTPSGEILSTNPAFERMTGYS 364 Query: 489 VEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + L + + + +++ + + ++ +L + + I Sbjct: 365 GAEALGRNPRFLSSGLHDQTFYRDIWCAVITQGHWRG---EIVNRRRDGELYNALLTIDA 421 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + Y DI++ K+ + +L AK+ AE + K+ FL+ +SHE+RTP+ I Sbjct: 422 VHDEYGELQHYVGVTSDITDRKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGI 481 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G ++++ N R + + RS + +L I+ D+LD +++++ ++ L P Sbjct: 482 LGMTQLLLESDL----NERQRRQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCD 537 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + +++ A +K + + ++ D R ++QI + +NA+ FT G Sbjct: 538 PLRIIRDVMTVYAPQAEKKGLGFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHEG 597 Query: 723 GQIIISTTHTSN------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +I ++T + + + V DTG+G+ + E +PF Q S R GTGL Sbjct: 598 -EIRLATWLDTETPAGGSGRLAICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGL 656 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 GL +A+ + +A G + S P +G+ + P+ Sbjct: 657 GLAIARRLAEALGGTLSVESEPDQGSRFTLSIPVQP 692 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 26/262 (9%), Positives = 58/262 (22%), Gaps = 11/262 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149 G + + + G + +G +S LH I + Q W G+ Sbjct: 346 PSGEILSTNPAFERMTGYSGAEALGRNPRFLSSGLHDQTFYRDIWCAVITQGHWRGEIVN 405 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +G + + A ++ E + G+ A ++ Sbjct: 406 RRRDGELYNALLTIDA--VHDEYGELQHY--VGVTSDITDRKRHEAELLAAKERAESAAR 461 Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K S + I + + + D L +L Sbjct: 462 AKTTFLSTMSHELRTPMHGILGMTQLLLESDLNERQRRQLDTVKRSADTLLAILADILDY 521 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E + + +++ + + + Sbjct: 522 TRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAEKKGLGFVLDSSRPAPGFVIVDARRLQQ 581 Query: 325 TVDKCPI-PFFVYSHGNLFYAN 345 +DK G + A Sbjct: 582 ILDKLTANAVKFTHEGEIRLAT 603 >gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str. 8004] Length = 630 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 96/499 (19%), Positives = 191/499 (38%), Gaps = 38/499 (7%) Query: 334 FVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 V+ N +F T V ++ ++ + Sbjct: 1 MVFEGDRPTDYIFRVTNEAFQRYTGLSEVANV-------SMRSLRADHEQEWFDRYGHVA 53 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 I + + + PE + + + + +R++ Sbjct: 54 LTGNRIHFEMQAKALNR--------WYSVDAFRVGPPELKRVAVLFMDITERKRVERELA 105 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + ++ + + +++ +G++ N A + FG + ++ L V Sbjct: 106 ESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGTVSAWSELLHPEDVPV 165 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEW 564 SL+ ++ L + + + + + + + + D++E Sbjct: 166 FQ--FELAASLEEQRGLHALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQ 223 Query: 565 K-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + Q A+ AE + K +FLA +SHE+RTPLT I+G+SE++ + Sbjct: 224 REIALAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--E 281 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G+P Y + I S +++D+LD+S + GK+ L E + L E V EA+ + Sbjct: 282 EGHPNYKG-LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEP 340 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K +++ +L D ++Q+ N+LSNAI FTP+ G+I ++ H + Sbjct: 341 VAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEH-DDGHF 399 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796 I+ VRD+G G+ + L F Q + + G GLGL + + +V+ + G+ S Sbjct: 400 IVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSG 459 Query: 797 TPAKGTLIEIIFPLYDTSH 815 KG + P + Sbjct: 460 GRGKGATFTVRLPEHQPDQ 478 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 48/462 (10%), Positives = 122/462 (26%), Gaps = 48/462 (10%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D + +SE F + W +DA G ++ ++ + G Sbjct: 91 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGVDISSG 149 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 ++ + + L+ Q + +G + I++ A P YS + Sbjct: 150 TVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRHDG--QWRWIEMTATPRYSAD 207 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R ++ + E E ++P Sbjct: 208 GRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 266 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288 + +++ H + + +++ + + D ++ L + Sbjct: 267 TTILGWSELLLQRVEEGHPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 326 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + + E ++ L + L + F+ + + P+ Sbjct: 327 LAEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKF-TPAH 385 Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 + DD + G+++ + + + Sbjct: 386 GRIDVTVEHDDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQ 445 Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446 ++ + + +P + +Q + + + Sbjct: 446 LVEMHGGQVGATSGGRGKGATFTVRLPEHQPDQAKRPRLELRRRLMSEQIVEARALNGLR 505 Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREG 472 + Q L +LE + +D +A+I+ G Sbjct: 506 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRG 547 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 21/239 (8%), Positives = 58/239 (24%), Gaps = 11/239 (4%) Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 ++V++++ D + + + E Y+ Sbjct: 17 NEAFQRYTGLSEVANVSMRSLRADHEQEWFDRYGHVALTGNRIHFEMQAKALNRWYSVDA 76 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346 + + + ++ + E E D P+P +V G + + N Sbjct: 77 FRVGPPELKRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 136 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 ++ S LL + L A + + Sbjct: 137 AYGEFFGVDISS--GTVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRA-----RRH 189 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462 + + + + G P+ + R + ++ + E+ + Sbjct: 190 DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMA 248 >gi|298244389|ref|ZP_06968195.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297551870|gb|EFH85735.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 745 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 131/736 (17%), Positives = 259/736 (35%), Gaps = 51/736 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D + S +G K+ G L + L + + Q + T Sbjct: 50 LDPSATIYYASTRAAAMLGTSKQKLQGGTLWQGAPHLVGTALYQAVTTAIHTQESLA-IT 108 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSH 206 PI T ++ + L LP + F+ G V ++ + L + F+ Sbjct: 109 YRCPI--TQNWLRVRL--LPTHG--GVLLFFQKGKEPVRLSDALPQSEQRYRSLLESFT- 161 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 G + E I Q P ++ + L + Sbjct: 162 -----DGIVILTPEGLIIDINQHPLVVAQVSREEVIGRPMVDFPTWKSAPVAQKQLRAAI 216 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQ------NNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E H + Y + +++ L + + EYL+ E E Sbjct: 217 ARASGGETVH-FEVRLYPQAEHYRDLALVIIPHHADNQRIEYLTCVGLEVTERKQAEEEW 275 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 +D P +V G+ Y N + T DD I G + + Sbjct: 276 RV--LLDVLPHFVWVMRPDGSPSYQNRRWRDYTTVAVEDDQGIDGWSHWIHPDDRQRVLE 333 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + ++ + ++ + +Q + Sbjct: 334 TWQAAV-----QSGNPYEVQHRLLEGETGTYRWYLTRGVPRKDQQGVIWQWVRTCTNVDE 388 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + + ++ +++++ GI I+R+ I+ N ++ GY ED+ + Sbjct: 389 LKEVETALYQSRERMRTLMDSNIIGIF-ISRDDEIIEANNTFLRMTGYSQEDLRQGNMDW 447 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTM 558 F + S + + L K+ L + + PF + Sbjct: 448 FRMTHPDSFTRTQQAQQELTQHQTLLPYEKEYVCKDGSRLPVLVCAVAFPFDPSQNICFV 507 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D S K+ + + K +FL+ SHE++TPLTAI + + R Sbjct: 508 LDNSARKELELR--------------KENFLSMASHELKTPLTAIKMRLQ-LARVRLLKQ 552 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 G + + +L+ ++ +LLD+SK+++GK++ +EPV ++ V E QL Sbjct: 553 GLGEAATMLSRAEEPVHLLDRLIGELLDVSKLQAGKLDYLYEPVDMEALVYEIAETTQLM 612 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + I++ S ++ D ++Q+ +N++SNAI ++P + I TS V Sbjct: 613 STTHTIVVHGSAPG---TVIGDKGRLEQVFINLISNAIAYSPDANTVDIDLHATSEA-VT 668 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + VRD G+G+ + EK + F + + Q G G+GL +A+ +V + G + S Sbjct: 669 VSVRDYGIGIPQGQREKIFERFYRAFDLSQRAVPGLGMGLTIAQEIVTQHGGTITVQSEE 728 Query: 799 AKGTLIEIIFPLYDTS 814 KG+ ++ PL + Sbjct: 729 GKGSTFQVTLPLERPT 744 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/316 (8%), Positives = 70/316 (22%), Gaps = 16/316 (5%) Query: 65 TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSD 123 T +E + F W + G + G Sbjct: 266 TERKQAEEEWRVLLDVLP-HFVWVMRPDGSPSYQNRRWRDYTTVAVEDDQGIDGWSHWIH 324 Query: 124 ILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 ++ N + + L T Y +P + ++ Sbjct: 325 PDDRQRVLETWQAAVQSGNPYEVQHRLLE-GETGTYRWYLTRGVPRKDQQGVI--WQWVR 381 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + + ++ L + + ++ I + + + Sbjct: 382 TCTNVDELKEVETALYQSRERMRTLMDSNIIGIFISRDDEIIEANNTFLRMTGYSQEDLR 441 Query: 243 LTEYYA-----HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK-KQYFGTLQNNS 296 + LT ++ LP ++++ + ++ + S Sbjct: 442 QGNMDWFRMTHPDSFTRTQQAQQELTQHQTLLPYEKEYVCKDGSRLPVLVCAVAFPFDPS 501 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 + L + L + ++ + L A L ++ Sbjct: 502 QNICFVLDNSARKELELRKENFLSMASHELKTPLTAI----KMRLQLARVRLLKQGLGEA 557 Query: 357 VDDIEIAGGLSTLLDA 372 + A LLD Sbjct: 558 ATMLSRAEEPVHLLDR 573 Score = 41.2 bits (95), Expect = 0.81, Method: Composition-based stats. Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 7/135 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 QL S+LE SD + ++ I + + + G + + + + Sbjct: 35 QLTSLLETLSDTLIFLDPSATIYYASTRAAAMLGTSKQKLQGGTLWQGAPHLVGTALYQA 94 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 +T + + + LR+ + L E + + L Sbjct: 95 VTTAIHTQESLAITYRCPITQN-----WLRVRLLPTH--GGVLLFFQKGKEPVRLSDALP 147 Query: 573 HAKKIAEKESSHKSD 587 +++ +D Sbjct: 148 QSEQRYRSLLESFTD 162 >gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 801 Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats. Identities = 107/623 (17%), Positives = 238/623 (38%), Gaps = 34/623 (5%) Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + + + S + + + + ++ + E + Sbjct: 12 ALFHARMEARVNSTATTENQRSLTRSLVNPLAVAVVMIVLIISGVIAFHNIRELQETRLK 71 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----- 328 T+ + + + + + F E T E++D+ Sbjct: 72 VGLTLKVLASLAEIEGAVMDAERGQRD--YLITDDQRHLEPFKEAVKRTRESLDQFEKLT 129 Query: 329 ----CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 F Y N+ + ++ + E A L + Sbjct: 130 QDHAVQRAKFNYLRENVEERIKHLNAVLDIRAEEGPEAARAAVIQNLDQNLMGKIDDLAI 189 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + + + T + +++ + E + + Sbjct: 190 SMRKIEEDLLVVREAMATRAYRSGIVTSVSSTLIGLI-----LVGSVLYLLERNRRKAER 244 Query: 445 RKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + ++ L+A G I+ E L T+ ++ G E++ + + Sbjct: 245 DALMLNATRERVQLALDAAEMGAWNIDPETNTLQTDERYRRIHGVEQEEMTFEDSLKRIH 304 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC------YS 555 + + + + +S ++ + + I + + Sbjct: 305 PDDRARVRQAVRASMSPLDPSPYSVEYRVVHRDGSIRWVSSKGIARASRRRGKAVLTSFD 364 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 T+ D++E K+++ +L +++IA + KS+FLA +SHEIRTP+ AI+G+++V+ Sbjct: 365 GTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLL---- 420 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G L +P I R+G +L ++ND+LD+S+IE+GK+++ E V L V + SL+ Sbjct: 421 GHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLM 480 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q+ A+EK + + F +P+ I D ++Q+ +N++ NAI FT G + + Sbjct: 481 QVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGS-VRLKVRFMKG 539 Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V + DTG+G++ + ++ KPF Q S + G+GLGL +++ +++ G+ Sbjct: 540 ADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGE 599 Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814 + S +G+ + P++ Sbjct: 600 MSLESELGEGSTFFVRLPVHSVE 622 Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 18/252 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------Q 140 WNID + E + G + M D +H D + ++ Sbjct: 268 WNIDPETNTLQTDERYRRIHGVEQEE---MTFEDSLKRIHPDDRARVRQAVRASMSPLDP 324 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + + + + +G+ +V A R + G V +R Sbjct: 325 SPYSVEYRVVHRDGSIRWVSSKGIARASRRR-GKAVLTSFDGTVADVTERKRQEERLQRS 383 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ ++ K + + P + L + D+ Sbjct: 384 EQIALAANQSKSEFLANMSHEIR-------TPMAAILGYADVLLGHLEDPDNRNCVMIIK 436 Query: 261 LLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 SL + D I + + L + + R + E E Sbjct: 437 RNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEFE 496 Query: 320 NLTPETVDKCPI 331 P++++ P Sbjct: 497 GRVPQSIETDPT 508 >gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis HTCC2601] gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp. HTCC2601] Length = 855 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 128/586 (21%), Positives = 234/586 (39%), Gaps = 41/586 (6%) Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 ++ + LL +++ L + + + + + S L Sbjct: 5 ARLAEERRARLAAERLLELKQAELFAANRKLGKHARALSDEIHETRAEITEVRSENRLVK 64 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAG 364 + E + + F +Y+ L ANP+FL ++ +D + Sbjct: 65 SQLGLAHEKIELVEGQLWKALQTMRDGFAMYNSDALLELANPAFLA--PFEDIDSVGPGA 122 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 +L + + R + + + I E T + ++ Sbjct: 123 SYRHVL-EMLVEEGIVDLQGERRRHWLSRMQERWEMSPIPP--ETIRLWTGQFIKIQDRR 179 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + E+M++ S +E DG I + E +L N L Sbjct: 180 MPDGGVVSLCVDIT-----------ELMRMWSAIEELPDGFVIYDAEDRLLMCNAPYRNL 228 Query: 485 F---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + G EDILR + +L E LS R E+ ++ Sbjct: 229 YSDSAPAIIPGASFEDILRYGLSQGQYAEALGREEDWLEERLSAHRRA--EQEMEQQLRD 286 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + L + ++ DI+E K+ + +L AK+ AE+ S KS FLA +SHE Sbjct: 287 GRWLRIY---ERALSDGGRVGLRIDITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHE 343 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ ++G +E+++ + Y + I SG +L I+ND+LD SKIE+ ++ Sbjct: 344 IRTPMNGVVGMAELLRESAL----SDEQALYVDTIRNSGEALLVIINDILDYSKIEAERL 399 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714 L EP L+ V E + ++Q A EK + + + +P R + D V+QI N++ N Sbjct: 400 QLKPEPFDLERTVHEVLLMLQPTAREKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGN 459 Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A+ FT G I I+ E + V DTG+G+ ++E F Q+ + + + Sbjct: 460 AVKFTNEGHVLIRITGRCVEEGEAAVHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQF 519 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYDTSH 815 EGTGLGL + K + D G+ ++ S +G+ ++ P+ + + Sbjct: 520 EGTGLGLAITKRLTDLMGGEIWVESEAGRGSCFGLRMVLPVDEPAQ 565 >gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467] Length = 609 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 83/418 (19%), Positives = 180/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 I+ R + + ++ + E ++ + ME E +L Sbjct: 207 GEMHEQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K IR F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KREFWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 38.1 bits (87), Expect = 7.2, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 1154 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 93/418 (22%), Positives = 172/418 (41%), Gaps = 53/418 (12%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV 499 R + ++ + ++ + I I + + G IL N+A L Y + L+ Sbjct: 259 RRSGAELLRSETRFKTMFHDSPVAIYINDAQSGTILDANQAACNLCEYASLEELQTGNIW 318 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 Q + + ++ + + Q E + + + + ++ + C T Sbjct: 319 LDPQYSFAEAQEWIRKAVEQG-PQVFEWHMRSRSGRSFWVQIHLRCIEVNAAPCVLATAI 377 Query: 560 DISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLARVSHEIRTPLTAIIG 605 DI+E +Q + KL + E+ S KS+FLA +SHEIRTP+ +IG Sbjct: 378 DITERRQAEEKLHETARQMERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIG 437 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 + ++ N YA + SG +L ++ND+LD SKIESGK+ L L Sbjct: 438 MTGLLLETDL----NETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLR 493 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + S++ A EK + S ++P ++ D ++QI N++ NA+ FT G + Sbjct: 494 DTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERG-E 552 Query: 725 IIISTTHTSNE-------------------------------EVILRVRDTGVGMTNYEL 753 +++ + + + VRDTG+G+ ++ Sbjct: 553 VVVRVSIQESGVRRQETGDKSQETGDKSQETGDKSQESEEFCMLRFSVRDTGIGIPEDKI 612 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + F Q+ S + GTGLGL +++ + + G+ + S +GT PL Sbjct: 613 GLLFQSFSQVDASVTRKFGGTGLGLAISRQLAELMGGEVGVESIEGQGTTFWFTVPLS 670 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 40/405 (9%), Positives = 88/405 (21%), Gaps = 42/405 (10%) Query: 75 VFDPIPRTVRFTWN-IDAHGYLKEISEE--LPKTIGNYAF---KMIGMRLCDVSDI---- 124 F+P R A+G + +G + +G+ L D+++ Sbjct: 11 AFEPGSSPARPLSRGPRANGRFVTLILAVVWLLVLGGSLAWNWRHVGVSLTDLAETEAHS 70 Query: 125 -LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS----RNREFSGFR 179 D + + P P L+ LP RE + Sbjct: 71 AFMKDVTYRLWASMHGG-------VYVPPTEATPPNP-YLSHLPHRDVVTADGRELTLVN 122 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 + L + + + Sbjct: 123 PAYMTRQVHELGRQEYGLVGHITSLQPLRPANAADPWETEALQTFLDGADRAVTVEQMDG 182 Query: 240 VSSLTEYYA--HKDDVLKTEKYPLLTSEESSLP-----EQEDFHTINLNQYTKKQYFGTL 292 L + + Q L Sbjct: 183 QPVFRLMRPLVALPSCLTCHSEQGYQEGDPMGGISVSVPLRPYLDAAGQQRLFLLVAHGL 242 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLL 350 S + R+ A E P+ ++ G + AN + Sbjct: 243 IGGLGLSGLVWAGRSLRRSGAELLRSETRFKTMFHDSPVAIYINDAQSGTILDANQAACN 302 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 L +Y S+++++ + P+ S A + + + + + + Sbjct: 303 LCEYASLEELQ----TGNIWLDPQYSFAEAQEWIRKAVEQGPQV-FEWHMR--SRSGRSF 355 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + N P + + R + K+ Q+ Sbjct: 356 WVQIHLRCIEVNAAPC---VLATAIDITERRQAEEKLHETARQME 397 >gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis] Length = 611 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 83/418 (19%), Positives = 180/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E +L Sbjct: 209 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 264 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 265 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 320 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 321 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 377 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 424 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K I F Sbjct: 425 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFT 484 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 485 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 543 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 544 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 601 Score = 38.1 bits (87), Expect = 6.8, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 277 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 333 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 334 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 390 RTPLTSMRSYIEALSEGAWENPE 412 >gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 1371 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 104/562 (18%), Positives = 194/562 (34%), Gaps = 48/562 (8%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353 + ++ + E D P + S G + + N F + Sbjct: 484 LAGVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTATSDGLVDFWNTRFYNYSG 543 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + D+ S T + + Sbjct: 544 LTPENSLGKS------WVNAFHPDDLVEAQRRWKHSLNTGDPYMTEYRCQSRDGHWRWFL 597 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 ++ + + G + ++ K + QL S++ + I ++ + Sbjct: 598 GRALPQRNKETGKVERWFGTCTDVHESIQTKMNAKRTRQQLLSVIAHSHVTIFTVDPKRR 657 Query: 474 ILS------TNRAVSKLFGYPVEDI------LRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + N + + + T L + IL + Sbjct: 658 VTMLEGALIWNNTHEENHDGTRWFVGENMYKVFNRLTAQLADGERPEFLEPIELILDGRV 717 Query: 522 RQTL-EKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHA 574 + + E + L + + + + D++E K + L Sbjct: 718 AEDVKEHGIDDRWYRTRFLPMFGKKTQESGAKNDTYIEGVIGVIMDVTELKSREQALEKQ 777 Query: 575 KKI----------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K A++ + KS FLA +SHEIRTP+T ++G +E++ + Sbjct: 778 SKEKRKAIANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLAGMHL----DEEQQ 833 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I S +L ++ND+LD SK+ESG++++ SL V E ++Q K + Sbjct: 834 EYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNL 893 Query: 685 LIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737 ++ ++I ++ D V+QI N+L+N+I FT G + S EV Sbjct: 894 DFQSEIGDSIENDLVVIGDPGRVRQILTNLLTNSIKFTNQG-YVRFSVVAEKETAESIEV 952 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V D+G+G+ + +K +PF Q S R GTGLGL + K ++D G+ + S Sbjct: 953 RFTVEDSGIGIQDEVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESN 1012 Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819 GT P S P + Sbjct: 1013 VGVGTRATFWIPFNKPSGPAEA 1034 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 17/172 (9%), Positives = 39/172 (22%), Gaps = 7/172 (4%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-D 128 E F + W + G + + G +G + + + Sbjct: 507 DEERFKLICDTMP-QLVWTATSDGLVDFWNTRFYNYSGLTPENSLGKSWVNAFHPDDLVE 565 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187 L + + + +G + ALP + + R FG Sbjct: 566 AQRRWKHSLNTGDPYMTEYRCQSRDGH--WRWFLGRALPQRNKETGKVE--RWFGTCTDV 621 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 + KR ++ + K + + + Sbjct: 622 HESIQTKMNAKRTRQQLLSVIAHSHVTIFTVDPKRRVTMLEGALIWNNTHEE 673 >gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199] Length = 1188 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 129/774 (16%), Positives = 257/774 (33%), Gaps = 77/774 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144 W I+ G S + + G M + + + ++ Sbjct: 143 WRIETPGDRHVWSAQTYRIHGIEPGTPMSSANASALYHPDDRERVAAAVNQAIRFGVDIA 202 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +GT V R+ + + G++ R ++ Sbjct: 203 FEAKIIWPDGTVRKVACR--GTTERGRDGKATAV--VGVLQDLTDQIAARETLAERNRAL 258 Query: 205 SHLHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----- 255 + L E + S ++ + + + + L + Sbjct: 259 AILRETVEIVPYSISVYDEHDRFVLANRKYFELYPYLENETKLIGKTFEDVLRISLQNKV 318 Query: 256 ---TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + ++ + ++ ++ N S +S R + Sbjct: 319 IMDRTALEDPENYVAARMADRRGGLPMAERRLANGHWYLIRENRTTSGHTISTRIDITEQ 378 Query: 313 AYFDEGENL----TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV--DDIEIAGG 365 T+D P + L N +F+ L + + G Sbjct: 379 KQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAWNSAFVSLVGVEPERFERGRPLRG 438 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L+ + A S I+P+ L+ + R+ + N A+ P Sbjct: 439 LTKDVLAKLPSTETGIRPMFLHIARRSPADFE-----WRRNDGEIYAVLGRPMPNG---- 489 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + R + + +L + LE S+G A+ + I++ N +++ Sbjct: 490 ---GYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFALFDANDILILCNETYRRMY 546 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL------ 539 G I +P F++ + + + E++ L ++ Sbjct: 547 GKSTAYI--RPGRRFVDIVRDAAATGQFPAAVGREEEWVAERLELHRNPPDQPTLQALAD 604 Query: 540 -SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI--------------------- 577 + ++ + DI+E + +N L A+ Sbjct: 605 GRVLLVAENRTSDGGSVGIRSDITERVRTENDLRAARDELEEQAQSLRDLAEQIDAARLR 664 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHE+RTP+T ++G E+ Y + S + Sbjct: 665 AEEAGAAKSRFLAVMSHELRTPMTGLLGMIELASRTELSK----EQQGYVRIMRDSAETL 720 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L ++ND+LD SK+E+GK+ L + ++ + + L Q A+ K +++ ++P Sbjct: 721 LALLNDILDFSKLEAGKVQLEEITFAPEQIIGDVFGLFQAQASAKGLVLEADLRPSVPAW 780 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVIL--RVRDTGVGMTNYE 752 + D VKQI N++SNAI FT G +I + T V L V DTG G+ Sbjct: 781 VRGDPLRVKQILSNLISNAIKFTTKG-RITVRLGATEGPSGLVRLQGEVIDTGQGIAAGV 839 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 LE + F Q +S + GTGLGL +++ + + G + S +G++ Sbjct: 840 LEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSITVESELGRGSVFRF 893 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 51/526 (9%), Positives = 131/526 (24%), Gaps = 55/526 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + + G IG + + DP +L + + Sbjct: 32 DPAGTIVAWNPAAERLFGIVTTDAIG-GPRSLIEPED-DPAGWFDGVLGGRPRRFRGRR- 88 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + + P+D+ A PI + + G +V R + + Sbjct: 89 --TDAQHNPFPVDVTASPIVNADGAVQG-----VVQTLRRAPMEDSRPLIELAEDMAWIG 141 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + ++ + + + ++ + Y D + Sbjct: 142 HWRIETPGDRHVWSAQTYRIHGIEPGTPMSSANASALYHPDDRERVAAAVNQAIRFGVDI 201 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLT 322 + + T + ++ + A + + Sbjct: 202 AFEAKIIWPDGTVRKVACRGTTERGRDGKATAVVGVLQDLTDQIAARETLAERNRALAIL 261 Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLT----------KYKSVDDIEIAGGLSTLLD 371 ETV+ P VY AN + L D + I+ ++D Sbjct: 262 RETVEIVPYSISVYDEHDRFVLANRKYFELYPYLENETKLIGKTFEDVLRISLQNKVIMD 321 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L D + A RL W + + Sbjct: 322 RTALEDPENYVAARMADRRGGLPMAERRLANGHW------------YLIRENRTTSGHTI 369 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + + + ++ + L + L+ + + + + +++ N A L G E Sbjct: 370 STRIDITEQKQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAWNSAFVSLVGVEPER 429 Query: 492 I-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK------ITLGSTKEEKLLSLRII 544 +P + L + L + ++ ++ Sbjct: 430 FERGRPLRGL-----TKDVLAKLPSTETGIRPMFLHIARRSPADFEWRRNDGEIYAVLGR 484 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + Y +++ ++ + + + + S+ A Sbjct: 485 PMP---NGGYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFA 527 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 6/126 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+++A D I + G I++ N A +LFG D + P ++ ++ P+ + Sbjct: 19 SLVDAIDDAIIAFDPAGTIVAWNPAAERLFGIVTTDAIGGPRSLIEPEDDPAGWFDGVLG 78 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 R + + + + + + + ++ + Sbjct: 79 GRPRRFRGRR------TDAQHNPFPVDVTASPIVNADGAVQGVVQTLRRAPMEDSRPLIE 132 Query: 576 KIAEKE 581 + Sbjct: 133 LAEDMA 138 >gi|293606829|ref|ZP_06689180.1| sensor histidine kinase with CheB and CheR activity [Achromobacter piechaudii ATCC 43553] gi|292814833|gb|EFF73963.1| sensor histidine kinase with CheB and CheR activity [Achromobacter piechaudii ATCC 43553] Length = 1372 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 120/628 (19%), Positives = 224/628 (35%), Gaps = 24/628 (3%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + F H + E D+ S + P + ++ L + L+ Sbjct: 629 RPFRHEETANDYMLVLFDEVEDVMSPEGVAPTVGASAVLTQLEAELQGTKEQLQATIEQS 688 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--YFDEGE 319 TS E E+ IN + + T + + E L N S + Sbjct: 689 ETSTEELKASNEELQAINEELRSATEELETGKEELQSVNEELITVNAELKSKVDETAKIN 748 Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + I FV ++ + P + + D ++ LD P ++ + Sbjct: 749 DDLQNLIASTDIATVFVDRKMHIQWFTPRATDVFNVITSDAGRSLLDITHRLDYPDMARD 808 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + A ++ + +P+ A E + Sbjct: 809 AA----------GVFESLRAVEREVRSDAGRWYLARLLPYRSAEHRIE--GAVLTFIDIT 856 Query: 439 DTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 D R + ++ + L + E+ D GI ++ EGII + N +FGY + + K F Sbjct: 857 DRRQAEDQVRLGEAHLKLMTESARDFGILTLDSEGIITNWNVGAETMFGYNRTEAIGKSF 916 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYS 555 ++ E+ K+ L+ + ++ P ++ Sbjct: 917 SIIFTDADIEAGRPE-KELERARQIGYAPDERWHRRKDGGLIFCTGGVNRMDDPDYQGFA 975 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D+++ K + A ++ K +F A VSHE++ PL I +E++ Sbjct: 976 KIVRDVTDLKLRDAEQESRLDRARADNVLKDEFFAMVSHELKHPLNLIQLNAELLARTPA 1035 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +P A+ I RS I++DLLD+S++ +GK+ L+ + + + ++ Sbjct: 1036 VR-NSPGAARSADLIQRSVKGQARIIDDLLDLSRVRTGKLALNQSIFDITAIATNILEVL 1094 Query: 676 QLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A + +R+ F + AD V+QI N+L+N I FTP GG + + Sbjct: 1095 DPVARAAGLTLRSEFDAGRAIHLNADPLRVEQIIWNLLNNGIKFTPPGGIVTLRLEVED- 1153 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + L V DTG G+ L K F Q + + G G+GL +A +V A+ G Sbjct: 1154 ARLRLDVVDTGQGIDAQFLGKVFDMFSQADLRQRNLASPGLGIGLAVASELVKAHGGTIQ 1213 Query: 794 IFS-TPAKGTLIEIIFPLYDTSHPHDCI 820 S +G + PL + Sbjct: 1214 AHSDGHGRGARFTVRMPLASAQQEESSL 1241 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 23/248 (9%), Positives = 63/248 (25%), Gaps = 13/248 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G + + G + IG + I+ +L + + Y Sbjct: 887 LDSEGIITNWNVGAETMFGYNRTEAIGKSFSIIFTDADIEAGRPEKELERARQIGYAPDE 946 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHL 207 W + + + ++GF IV A + + Sbjct: 947 RWHRRKDGGLIFCTGGVNRMDDPD-----YQGFAKIVRDVTDLKLRDAEQESRLDRARA- 1000 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSE 265 E + P +++ ++ + T + ++ + + Sbjct: 1001 ----DNVLKDEFFAMVSHELKHPLNLIQLNAELLARTPAVRNSPGAARSADLIQRSVKGQ 1056 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + + Q + + E L + E + Sbjct: 1057 ARIIDDLLDLSRVRTGKLALNQSIFDITAIATNILEVLDPVARAAGLTLRSEFDAGRAIH 1116 Query: 326 VDKCPIPF 333 ++ P+ Sbjct: 1117 LNADPLRV 1124 >gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6] Length = 1491 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 119/561 (21%), Positives = 228/561 (40%), Gaps = 37/561 (6%) Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E Q + + ++ + + + T +D+ Sbjct: 663 AVNEMIVRERDPQRLFTTACQIAVSRGGFTMAWVGLLDPTTHAVLPVASAGFTNGYLDQL 722 Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 I G+ A L + +DI + +++ L Sbjct: 723 QISLADNPRGHGPVAT--ALRTQHHVIANDIATDPRMEPWRANALKRGYSSVGVFPLIVR 780 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + S + + + + + + ++ R+ + ++ Sbjct: 781 GQVRGVISLYASEVHFFDQAEIQLF------DEMANDLAFALEFTEQERQRRLAEEQLRT 834 Query: 450 EVMQLCSILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + +L A D + + +G +L N + P E L + L + + Sbjct: 835 SEHRSRVLLNAIPDMMFRLGLDGRLLDYFGNP--EQRLYVPPEIFLGRMLNEILPPDVTA 892 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 N+ + + + QT E + L + + +S + + DI+ KQ Sbjct: 893 QWNNAI--LAAPQGLQTFEYVLLI---DGEPVSFEARLVLNEDEHEVVAIVRDITARKQM 947 Query: 568 KNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + L H ++ + K DFLA +SHE+RTPL AI+ SE Sbjct: 948 ERDLLHERQSLARRVAERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILALSEG 1007 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + Q GPL N R I I+ SG +L ++ND+LD+SKIE+G+M+L + + + + + Sbjct: 1008 MLEQLRGPL-NERQIAALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSDVCA 1066 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 ++ ++ A++K+ I + R AD R +KQ+ +N+L+NA+ FTP GGQI + Sbjct: 1067 ASMIFIKEQASKKQQKINLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQIDLIV 1126 Query: 730 THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 +++ V+ + V DTG+G+++ E+++ KPF Q+ + + EGTGLGL L + + + + Sbjct: 1127 KADASQGVLAITVADTGIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLAELH 1186 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + STP G+ I+ P Sbjct: 1187 GGSVSLESTPGVGSRFTILLP 1207 Score = 74.3 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 53/401 (13%), Positives = 107/401 (26%), Gaps = 25/401 (6%) Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 S L E S V Y S+++ H RM +V Y + + Sbjct: 266 SPLLERSPTISLVVWAPYIRNSERAAFEHSQRMIGRVGFSITQYTPTGQFIPASQRAFYF 325 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 P + + + ++ + TL S+ L+ L Sbjct: 326 PGTFFEPYTINQVALGFDVASEPVRYATLTRASQSGQSMLTSPIRLVSRPQAPPHILLIS 385 Query: 324 ET-VDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 P+ + +A+ L Y A L Sbjct: 386 PIYASNAPLASIAEREAALRGIVFASIQMDTLLSYALNHLTPRAIDLVFYDVTDSAPQLL 445 Query: 380 AIKPV----MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 A +P D A ++ + +T + + Sbjct: 446 AYRPFDPQQTAAPRDPDAALAEGYSQSLTIFGRHWQVLTRADPTYIADIRGRIAWPILSV 505 Query: 436 EDVDTR----------INKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484 N + + +I+ D IA+ + + N A + Sbjct: 506 GLASVIAFLLFMAAWLRNTQALRAREEIFSAIVGQAVDAIALFDVATERFVEFNTAAHEG 565 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY ++ +K Q++ + + H + +IL+ T K+ L + + Sbjct: 566 LGYTRDEFAQKSLLDIQAQHSSAEIRHNIEQILTEGSAS---FETQHLHKDGSLRMVEVR 622 Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++L + DI+E K + +L + S+ Sbjct: 623 ARRLNLQRRNYIAGVWTDITERKADDLQLRKLNRAYMVLSA 663 >gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22] gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583] gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22] gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecalis T11] gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B] gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A] Length = 609 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 83/418 (19%), Positives = 180/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E +L Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K I F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 38.1 bits (87), Expect = 7.0, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 568 Score = 337 bits (864), Expect = 5e-90, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 172/382 (45%), Gaps = 12/382 (3%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + +K++ + L +I + SD I I + GII++ N ++L+GY ++++ Sbjct: 155 IDELKQTNKKLKKSEVYLSTIFNSVSDAILIHDFNGIIVNVNDTANRLYGYLHDELIGMS 214 Query: 497 FTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFS 551 + +N+P + + L + + + + K K + + + Sbjct: 215 IKDIISKNSPYIYDDILKLINDRKKNKINTPVTLEAISIDKNHKEFWVESNSRAIIFNEQ 274 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 T+ DI+E K + +K+ A + +++F A +SHE+RTPL I+G ++++ Sbjct: 275 KAIIATVRDITERKNTE---LKSKEEALELEKLRTEFFANISHELRTPLNIILGVIQILR 331 Query: 612 NQRFG---PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 P+ + I + ++ +L ++N+L+D +K+++G + ++ V Sbjct: 332 RDLLDKEKPIDKGKIINNIDIERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIVSVV 391 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E V Y I + I D +++I LN+LSN I FT G I ++ Sbjct: 392 EEITLSVAGYIINNNINLIFDTDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSIFVN 451 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 E + L V DTG+G+ ++E F Q+ S EG+G+GL L K++V+ + Sbjct: 452 I-FDGEEYITLSVEDTGIGIPEEKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVEMH 510 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G + S GT I P+ Sbjct: 511 DGTISVESKYGVGTKFTIKLPV 532 >gi|57234234|ref|YP_181736.1| sensory box sensor histidine kinase/response regulator [Dehalococcoides ethenogenes 195] gi|57224682|gb|AAW39739.1| sensory box sensor histidine kinase/response regulator [Dehalococcoides ethenogenes 195] Length = 1258 Score = 337 bits (864), Expect = 6e-90, Method: Composition-based stats. Identities = 113/753 (15%), Positives = 245/753 (32%), Gaps = 69/753 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTW-Y 144 W D L S + G + + + + D + + DL+K + Sbjct: 406 WEFDLANGLVYPSAGAREIYGLESESITIPFVQQIPLSEYRSDLDKAMNDLIKHNIPYDI 465 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 P +G LYV ++ Y R FG + L + + +F Sbjct: 466 EFKIKRPTDGAVLYV----HSIAEYDAKRNLV----FGTIQDITKRKQAEELLRESEARF 517 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + +++ + +++++L+ D + L Sbjct: 518 RSTFDQSPIGAAIYDLGFKYRQVNDKFCKMLDYSDDELTNLSVRDITHPDDWPKDLIHLN 577 Query: 263 TSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + E + + + + +++ YL+ + ++ Sbjct: 578 QLKNREISRYETDKRYIHKSGSVFWVHLSVAGIRDAGGNLLYYLAMIVDITARKEAEDAL 637 Query: 320 NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + G L AN + + Y + + A LSD Sbjct: 638 QKYKLIAEDSRDIILFLDRQTGRLLEANTAAVKSYGYSRKQLLSMRIQDLRAPQARILSD 697 Query: 378 NNAIK--------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + M R D + +L Sbjct: 698 SEFEQAYAHGMLFETMHRRKDGSTFPVEVSSRGADIEGTTTL------------------ 739 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKL 484 I + + + ++ + + + + +D I + E G + N A + Sbjct: 740 -INIIRDTTERKQAEKALSESLQSYQVLFNSVTDAILVYQPEADYSPGKFIEMNDAAVAM 798 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY +++L+ + +N + + + L TK + + + + Sbjct: 799 LGYSRQEMLQMNPLDVVS-KGIPTVNVFTDTMRQAEKNSELVAEQTLKTKSGETIPVELH 857 Query: 545 --IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPL 600 + + DISE K+ + + + +E S + A ++HEI PL Sbjct: 858 SRMFEFGGKHTVITLARDISERKRLEEEQKKLRHQSEMSSRLAAIGEMAAGIAHEINNPL 917 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 T +IGF+ ++ ++ P P +E I+ V++IV +L ++ + Sbjct: 918 TGVIGFASILMDREDLP---PDAMEQLQIINSGSQRVVEIVKRMLTFAR----QSKPVRS 970 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IH 717 +++ E + + L I + + +P + D ++Q+ LN++ NA + Sbjct: 971 SINITELIDNTLELRSYVLKTANIDVVRHYEPGLPLLTVDSGQIQQVILNLILNAEYSMK 1030 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G + I+ + T + + + RD G+GM+ L K +PF GEG+GLG Sbjct: 1031 KAHEKGTLTITVSRT-GDRIRMSFRDNGMGMSAETLGKLFQPFFTTKEP----GEGSGLG 1085 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L L+ ++ + G S P +G + P+ Sbjct: 1086 LSLSHGIILEHDGTIRGESIPGEGAEFIVELPI 1118 Score = 150 bits (380), Expect = 7e-34, Method: Composition-based stats. Identities = 62/504 (12%), Positives = 138/504 (27%), Gaps = 25/504 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G L E+++ +G ++ G D ID + K T + Sbjct: 154 LDSEGRLIEVNQVWLDEMGYTKEEVAGRWFGDFLRPDQIDLFKKRFAVFKNTGTAATEFY 213 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G+ V I + F + + + + +K+ L Sbjct: 214 MNRKDGS--VVLIAFSGKIARDTKGNFK--QTHCTLQDITQRHLAEEAIRESQRKYQALF 269 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---------SLTEYYAHKDDVLKTEKY 259 E + V ++ + + + + S+ E + L E+ Sbjct: 270 ESIGDAAFVCYIDDHKWADEFIELNKVASDMLGYTHEQLLSMSVKELFFSLPSDLILEET 329 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + F L + + R+ S E E Sbjct: 330 TDKLYRHKVITRESRLRHKCGQAIPVEMTFH-LFDLQGKPAVLTLARDITSRKEAARELE 388 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V + F Y +L AN + + +E + LS+ Sbjct: 389 QSHSRLVKAEQVAGFGYWEFDL--ANGLVYPSAGAREIYGLESESITIPFVQQIPLSEYR 446 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + I + L + I A + G + Sbjct: 447 SDLDKAMNDLIKHNIPYDIEFKIKRPTDGAVLYVHSIAEYDAKRN----LVFGTIQDITK 502 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + + + S + + G AI + N K+ Y +++ Sbjct: 503 RKQAEELLRESEARFRSTFDQSPIGAAIYDLGFKYRQVNDKFCKMLDYSDDELTNLSVRD 562 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + +L ++ E K + + + + + + Y Sbjct: 563 ITHPDDWPKDLIHLNQL-KNREISRYETDKRYIHKSGSVFWVHLSVAGIRDAGGNLLYYL 621 Query: 556 LTMHDISEWKQEKNKLSHAKKIAE 579 + DI+ K+ ++ L K IAE Sbjct: 622 AMIVDITARKEAEDALQKYKLIAE 645 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 50/513 (9%), Positives = 139/513 (27%), Gaps = 49/513 (9%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 IDA G + + + L + +G +IG +L ++ HI N ++L+ ++ + Sbjct: 29 IDAESGKITDANPFLFEMLGYDTDAIIGKKLWEIGLFHHIVSNRKAFEVLQAKSGIRHED 88 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + + + ++ + ++ ++++ Sbjct: 89 VYLETKSGQIRQAEFTSNTYYVGEDKILQ-----CNIRDITERKLAEEELRKTEERYREF 143 Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 ++ + + K +V+ + D + K + Sbjct: 144 YQKSPIGYQSLDSEGRLIEVNQVWLDEMGYTKEEVAGRWFGDFLRPDQIDLFKKRFAVFK 203 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGEN 320 + E + + G + ++K +F E + Sbjct: 204 NTGTAATEFYMNRKDGSVVLIAFSGKIARDTKGNFKQTHCTLQDITQRHLAEEAIRESQR 263 Query: 321 LTPETVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDI-----EIAGGLSTL 369 + FV N + Y + E+ L + Sbjct: 264 KYQALFESIGDAAFVCYIDDHKWADEFIELNKVASDMLGYTHEQLLSMSVKELFFSLPSD 323 Query: 370 LDAPKLSD-----NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L + +D + L I H + + Sbjct: 324 LILEETTDKLYRHKVITRESRLRHKCGQAIPVEMTFHLFDLQGKPA-------------- 369 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + R++E +L + G + ++ + ++ Sbjct: 370 -----VLTLARDITSRKEAARELEQSHSRLVKAEQVAGFGYWEFDLANGLVYPSAGAREI 424 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 +G E I S ++ + +++ ++ +E + + +L + I Sbjct: 425 YGLESESITIPFVQQIPLSEYRSDLDKAMNDLIKHNIPYDIEFK-IKRPTDGAVLYVHSI 483 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + + T+ DI++ KQ + L ++ Sbjct: 484 AEYDAKRNLVFGTIQDITKRKQAEELLRESEAR 516 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 77/288 (26%), Gaps = 18/288 (6%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + E E K PI + + S G L N +L Y + Sbjct: 122 DITERKLAEEELRKTEERYREFYQKSPIGYQSLDSEGRLIEVNQVWLDEMGYTKEEVAGR 181 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G P D + + + A ++ + + + F + Sbjct: 182 WFGD---FLRPDQIDLFKKRFAVF--KNTGTAATEFYMNR---KDGSVVLIAFSGKIARD 233 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINRE---GIILST 477 + + + + + + ++ E+ D + I+ + Sbjct: 234 TKGNFKQTHCTLQDITQRHLAEEAIRESQRKYQALFESIGDAAFVCYIDDHKWADEFIEL 293 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N+ S + GY E +L ++ L + + + + K + Sbjct: 294 NKVASDMLGYTHEQLLSMSVKELFFSLPSDLILE--ETTDKLYRHKVITRESRLRHKCGQ 351 Query: 538 LLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + + + L DI+ K+ +L + K Sbjct: 352 AIPVEMTFHLFDLQGKPAVLTLARDITSRKEAARELEQSHSRLVKAEQ 399 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 27/282 (9%), Positives = 78/282 (27%), Gaps = 18/282 (6%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + E + + G + ANP + Y + I L Sbjct: 5 RPNPEVSELRYRRLFETAQDGILIIDAESGKITDANPFLFEMLGYDTDAIIGKKLWEIGL 64 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + ++ L T + + + ++ Sbjct: 65 FHHIVSNRKAFE----VLQAKSGIRHEDVYLETKSGQIRQAEFTSNTYYVGEDKI----- 115 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + ++ + ++ + + + G ++ EG ++ N+ GY Sbjct: 116 LQCNIRDITERKLAEEELRKTEERYREFYQKSPIGYQSLDSEGRLIEVNQVWLDEMGYTK 175 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E++ + F FL + + + T + K+ ++ + K Sbjct: 176 EEVAGRWFGDFLRPDQIDLFKKRFAVFKNTGTAAT---EFYMNRKDGSVVLIAFSGKIAR 232 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + T+ DI++ + + +++ + D Sbjct: 233 DTKGNFKQTHCTLQDITQRHLAEEAIRESQRKYQALFESIGD 274 >gi|298489788|ref|YP_003719965.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] gi|298231706|gb|ADI62842.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708] Length = 1418 Score = 337 bits (864), Expect = 6e-90, Method: Composition-based stats. Identities = 105/763 (13%), Positives = 242/763 (31%), Gaps = 76/763 (9%) Query: 96 KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KTTLWP 151 ++ K G M + D + I + +++ G + + Sbjct: 562 VYVNPAYEKFWGRSRASMGNNPKSWIEGVHP--QDRDRVIAQIQSQKDNESGVLEYRVLR 619 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ ++ I + + F G I A K+ ++KF + E Sbjct: 620 PDGSISWLW--ARRFTIKNEQGQIQYFGG--IAEDITEHKQTEAALKKTEEKFRYFTENS 675 Query: 212 KGHSSVE----------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + Y+ +S + D + E Sbjct: 676 DTLIWMASKDSKETLYINPAYEKIWGRSCQSLRENPQSW--REAIHPEDRDRILAEIEEH 733 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 E + + N + ++N E Y S + +E Sbjct: 734 HQKGEGA-NLEYRIVQPNGSIRWIWGRCFPVKNEQGELDYYGSLTEDITDRKLAEESLRD 792 Query: 322 TPE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + ++ + + + + + L + P+ Sbjct: 793 SETRLTLALENANMGIWECNLITDQ-CICSDNVGPLYGLPKGSVCPSSHEEFFNFFYPED 851 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + A + + W + + NQ + + G Sbjct: 852 REFCIQAVKRAIEQEGEF----AVEYRVVWPDGSLHWLRGTGKVYHNQQGQPIRMIGTTR 907 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + + ++ + ++L+ +D I + + + IL N+ +++G+ + + K Sbjct: 908 DISERKETEHQLYEQ----AALLDIATDAIFVRDFQTKILFWNQGAERIYGWQKHEAVGK 963 Query: 496 PFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 T + L ++ L T + TK + + + + + Sbjct: 964 NLKDLFCSKTTQQQESSALRTVVKLG---TWQGELRKKTKLGQEIIVESRWTLMFDADGQ 1020 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+E KQ + + +++ ++H++ LT I+G ++++ Sbjct: 1021 PKSILIVDSDITEKKQLEEQFFRTQRL-----ESIGTLAGGIAHDLNNILTPILGAAQLL 1075 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K + R+ + I+ + +V +L ++ G+ + V + ++E Sbjct: 1076 KGR--FAKDEERHPQLLAIIENNAQRGAALVKQVLSFARGLKGERGI----VQVKHLIAE 1129 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST- 729 I + K I T N+ + D + Q+ +N++ NA P GG + I+T Sbjct: 1130 IIQ-IGKQTFPKSIEFTTQIPENLWTVSGDTTQLHQVLMNLVVNARDAMPEGGTLTITTE 1188 Query: 730 -------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 +++ V DTGVGMT L++ +PF + GTGL Sbjct: 1189 NIYIDEAYTRMLIESKIGNYIVITVTDTGVGMTKEILDRIFEPFFTTKEFK----GGTGL 1244 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 GL A ++ ++ G + S KG+ ++ P ++ D Sbjct: 1245 GLSTALGILKSHNGFVTVSSQVGKGSTFKVFLPSVESPQVPDI 1287 Score = 102 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 84/309 (27%), Gaps = 17/309 (5%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFFV 335 L + + + + + + + ET + ++ Sbjct: 365 LRRSSDELEQRVAERRRELIVANQALEQEIKERKETQAALRKSEETFRQFAENLEAYIWI 424 Query: 336 YSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 S LFY NP++ + E + L A V Sbjct: 425 CSQDCSTLFYINPAYEKIWGRSCQSLWENPLSWIEAVHPEDLEPMMA--EVEKQHQKGEN 482 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 I+ R+ + + + F N+ + GI + + + + + + Sbjct: 483 ISVQYRIIRL---DGSIRWLWSRRFPIKNEQGQIQYYGGIGEDITERKQTEAAVRESEYK 539 Query: 454 LCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + + I + + + N A K +G + ++E P + Sbjct: 540 FHQFADNIQAVVWIASVDCTENVYVNPAYEKFWGRSRASM-GNNPKSWIEGVHPQDRDRV 598 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568 + +I S ++ + + L + + DI+E KQ + Sbjct: 599 IAQIQSQKDNESGVLEYRVLRPDGSISWLWARRFTIKNEQGQIQYFGGIAEDITEHKQTE 658 Query: 569 NKLSHAKKI 577 L ++ Sbjct: 659 AALKKTEEK 667 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 37/341 (10%), Positives = 90/341 (26%), Gaps = 44/341 (12%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336 IN + ++ ++ + L+ + + + + P F V Sbjct: 209 QINEELQQTLEELQIIKEELRQQNKQLATAREIT-----ESERRRYQDLFEFTPNGFLVT 263 Query: 337 S-HGNLFYANPSFLLLT-------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 G + AN + L K + +L LS + + + Sbjct: 264 DKLGVIQEANHAASSLLCVHQKYLVGKPITIFLGQSDRHNVLSHLSLSQHFQEWEIYIQP 323 Query: 389 SDRTCIAASARLHTIQWNRENSLAMT----------------------FIPFEKANQFPE 426 + AS RL + + L + Sbjct: 324 REGVPFPASIRLRAVYDRQGQWLGWCWLICNISVQKQAEKTLRRSSDELEQRVAERRREL 383 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLF 485 + +E E + + + + E I I +++ + N A K++ Sbjct: 384 IVANQALEQEIKERKETQAALRKSEETFRQFAENLEAYIWICSQDCSTLFYINPAYEKIW 443 Query: 486 GYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 G + + P + + M + + +++ + + + L Sbjct: 444 GRSCQSLWENPLSWIEAVHPEDLEPMMAEVEKQHQKGENISVQYRIIRL--DGSIRWLWS 501 Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + Y DI+E KQ + + ++ + Sbjct: 502 RRFPIKNEQGQIQYYGGIGEDITERKQTEAAVRESEYKFHQ 542 Score = 74.7 bits (182), Expect = 6e-11, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 9/155 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + E E + + E T +G + ++ G+I N A S L + ++ KP T Sbjct: 234 QLATAREITESERRRYQDLFEFTPNGFLVTDKLGVIQEANHAASSLLCVHQKYLVGKPIT 293 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554 +FL Q+ + +L+ + E +E I ++ + + Sbjct: 294 IFLGQSDRHNVLSHLSL-----SQHFQEWEIYIQPREGVPFPASIRLRAVYDRQGQWLGW 348 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + +IS KQ + L + E+ + + L Sbjct: 349 CWLICNISVQKQAEKTLRRSSDELEQRVAERRREL 383 >gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000] Length = 609 Score = 337 bits (864), Expect = 6e-90, Method: Composition-based stats. Identities = 84/418 (20%), Positives = 180/418 (43%), Gaps = 29/418 (6%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R I+ R + + ++ + E ++ + ME E L Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNHLD 262 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+L +DG+ +R G +++ N L E+++ L+ L + Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573 +L +++ T +++ ++ + + + + +HD++E ++ + + Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691 + ++ ++NDLL++S+++SG +L E V+ +E ++ + + +K IR F Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + D V Q+ NIL+NAI ++P GG I ++ V+ + D G+G+ Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +L K + F ++ ++ GTGLGL ++K ++ A+ G ++ ST +G+ I P Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599 Score = 37.7 bits (86), Expect = 7.4, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+E + +IG L ++ L I+ + + LL+ + + Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 E + + +D I + +G ++H + SH Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387 Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231 E + ++P Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410 >gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653] Length = 769 Score = 337 bits (864), Expect = 6e-90, Method: Composition-based stats. Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + + + + + + Y + S + Y++ D + Sbjct: 227 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 286 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ +++ + + + R+ ++ + + M + Sbjct: 287 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 341 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + GI + + ++ M++ +E S+ + + ++ N S Sbjct: 342 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 398 Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G PV + P P + + QT E+ + + L + Sbjct: 399 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 454 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573 ++ DI++ K + +L Sbjct: 455 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 511 Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 K+ AE + KS+FLA +SHE+RTPL AIIGFSE+I+ FGPLG+ RY EY Sbjct: 512 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 571 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 N I SGN +L+++ND+LD+SKIE+G +L E + L ++E + ++ L A EK I + Sbjct: 572 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 631 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 T + + + AD R++KQ+ +N+LSNA+ FT GG+I + T + + ++DTGV Sbjct: 632 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 689 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L K +PF Q+ N G+GLGL +++++ + + G I ST GT++ + Sbjct: 690 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 749 Query: 807 IFP 809 P Sbjct: 750 CIP 752 Score = 40.8 bits (94), Expect = 1.0, Method: Composition-based stats. Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 13/249 (5%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D A G + S + + +G A + + DV+ I++ + + I + + Sbjct: 256 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 313 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +V + + A + G I + D Sbjct: 314 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 368 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260 + E + + S V +L + T + Sbjct: 369 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRPFTFE 427 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E + + F + + Q+ S + D Sbjct: 428 RRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDSERR 487 Query: 321 LTPETVDKC 329 L D Sbjct: 488 LMATVHDLS 496 >gi|302038577|ref|YP_003798899.1| putative histidine kinase [Candidatus Nitrospira defluvii] gi|300606641|emb|CBK42974.1| putative Histidine kinase [Candidatus Nitrospira defluvii] Length = 1058 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 109/576 (18%), Positives = 207/576 (35%), Gaps = 45/576 (7%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 ++ L S + + + + + Q E Sbjct: 508 VEIHATALFESGGGLVHSRAFVRDVTERRLLEAQIHQYTTRLELAVNE------RTRQLV 561 Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS-----------VDDIE 361 E D F V G + N Y V+ + Sbjct: 562 ASQE---RYKALFDLVADSVFMVGEDGVIVAVNKREEQALGYSEQQVVGSSILNVVEPLH 618 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 L + + + + L ++ + + + Sbjct: 619 HDEMRVLLEKIRAGERQVPTQEITVRDATGRETPVEMDLILVRGSDHTWVMVQLRDITDR 678 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + M E E R++E L ++LE +D I ++ E N V Sbjct: 679 KRLERQMHTYQQELE-AKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKV 737 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +GY ED+L +P+ L + L L + ++Q E L + E + + + Sbjct: 738 LA-WGYAKEDLLGRPYLGLLSKRHRG---RRLKSTLDIGVKQVYEVEVLTKSGEPRSVMV 793 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + D++E K+ + ++ +++K+A A V+HEI P Sbjct: 794 SVSPLHGVEGEILGVLGIARDMTETKKLEQQIRNSEKLA-----SVGKLAAGVAHEINNP 848 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 L I+ + N R G L R EY ++ V IV LLD S+ + ++ L Sbjct: 849 LGGILN---CLYNMRKGTLSPSRQEEYLASMEDGLRRVQRIVRQLLDFSQQHNPELALA- 904 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 +++ V+ + L R+ + T+ + +IP ++ D ++Q+ +N++ NAI Sbjct: 905 ---DINQVVNRVLLLTDHLFVPHRVQLETALSPDIPELMIDRHMMEQVLMNLVLNAIQAM 961 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +GG + I T+ ++R++D+G G+++ L + PF N GEGTGLGL Sbjct: 962 RTGGVLTIRTSM-DEAHCLVRIQDSGCGISSSVLPRIFDPFFTTKN----EGEGTGLGLS 1016 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 ++ +V+ + G+ ++ S KGT + PL H Sbjct: 1017 VSLGIVERHGGRIFVESEVGKGTTFTVSIPLATERH 1052 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 74/211 (35%), Gaps = 9/211 (4%) Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + R R+ + + +++ L + A+ F + E ++ R+ Sbjct: 355 ARRIARPIGLLHEGVQRIGSGRLDQQLDLKTGDEIEQLADAFNKMAANLRTSFEQIEQRM 414 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + + ++E + + I +N+ G + N+ GY +E++L+ + Sbjct: 415 E--DVRRLEARYRDLIEHSPEMIYQLNKAGQFVHVNKTGLDKLGYSLEEMLQMRLWDLVP 472 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558 + + + YL ++S T+ + + + I L S + Sbjct: 473 KGREAEVLAYLERLVSQGRSTI---ETVFVAGDGHPIDVEIHATALFESGGGLVHSRAFV 529 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 D++E + + ++ E + ++ L Sbjct: 530 RDVTERRLLEAQIHQYTTRLELAVNERTRQL 560 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 49/467 (10%), Positives = 119/467 (25%), Gaps = 65/467 (13%) Query: 40 KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV-----RFTWNIDAHGY 94 K + + N N + E+ + R + + ++ G Sbjct: 384 KTGDEIEQLADAFNKMAANLRTSFEQIEQRMEDVRRLEARYRDLIEHSPEMIYQLNKAGQ 443 Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 +++ +G +M+ MRL D+ + L Q +T + G Sbjct: 444 FVHVNKTGLDKLGYSLEEMLQMRLWDLVPKGREAEVLAYLERLVSQGRSTIETVF--VAG 501 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA------------------L 196 + +++ A ++ R F V A Sbjct: 502 DGHPIDVEIHATALFESGGGLVHSRAF--VRDVTERRLLEAQIHQYTTRLELAVNERTRQ 559 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 +++ L ++ + E I + ++ + + + L Sbjct: 560 LVASQERYKALFDLVADSVFMVGEDGVIVAVNKREEQALGYSEQQVVGSSILNVVEPLHH 619 Query: 257 EKYPLL----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----- 307 ++ +L + E +P QE + T + L S ++ + R+ Sbjct: 620 DEMRVLLEKIRAGERQVPTQEITVRDATGRETPVEMDLILVRGSDHTWVMVQLRDITDRK 679 Query: 308 ----------------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLL 350 + +E + ++ + Y N L Sbjct: 680 RLERQMHTYQQELEAKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKVLA 739 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 Y D + P L + +S + Sbjct: 740 -WGYAKEDLLG----------RPYLGLLSKRHRGRRLKSTLDIGVKQVYEVEVLTKSGEP 788 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 ++ E + GI + +T+ ++++ +L S+ Sbjct: 789 RSVMVSVSPLHGVEGEILGVLGIARDMTETKKLEQQIRNS-EKLASV 834 Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 22/269 (8%), Positives = 76/269 (28%), Gaps = 24/269 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + G + +++ + +G +++G + +V + LH D + + ++ Sbjct: 578 VFMVGEDGVIVAVNKREEQALGYSEQQVVGSSILNVVEPLHHDEMRVLLEKIRAGERQVP 637 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + T P+++ + + + + + + ++ Sbjct: 638 TQEITVRDATGRETPVEMDLILVRGSDHTWVMVQ----LRDITDRKRLERQMHTYQQELE 693 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKY 259 + K+ + + + + ++ S + + K+D+L Sbjct: 694 AKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKVLAWGYAKEDLLGRPYL 753 Query: 260 PLLTSEESSLPE------------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 LL+ + + T + + L E L Sbjct: 754 GLLSKRHRGRRLKSTLDIGVKQVYEVEVLTKSGEPRSVMVSVSPLHGVEGEILGVLGIAR 813 Query: 308 HPSLSAYFDEGENLTPET--VDKCPIPFF 334 + + ++ + + V K Sbjct: 814 DMTETKKLEQQIRNSEKLASVGKLAAGVA 842 >gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium nodulans ORS 2060] Length = 782 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 119/672 (17%), Positives = 248/672 (36%), Gaps = 69/672 (10%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHK 250 RLD + + I + PP R+ + + Sbjct: 90 APESELRLDGAVPASALVAGRAVYLIGPDDRIAASLPALLPPGHRLADHLGEAQPLLILG 149 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR---- 306 + ++L + ++ ++ + Sbjct: 150 ERAGVMTATLGGAPALATLRALPSGRGRVAVVQSLDTATADWRSRARTEAVVIGTATLVI 209 Query: 307 ------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352 ++ ++ + + + + G + Y + S L Sbjct: 210 VCVGLAYTLQADRARTVDRVCEQVRQRLDTALCRGRCGLWDWDIARGRI-YWSDSMYQLL 268 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y + G ++ L+ + + I+ + Sbjct: 269 GYVREHEFLSFGDVNALVHPDDTDLYGLASQLAAQDATVD------HEFRIRSAAGEWIW 322 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + +Q GI + + R M+L +EA S+ + + + Sbjct: 323 LKARAEIVRDQDDGGRHLVGIIIDISEQRRLAESTATADMRLRDAVEAVSEAFVLWDAQN 382 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ N +L +E+ +P + + + EI + DL + + Sbjct: 383 RLVLCNSKFRRLHALTLEEA--QPGRRYDAIMGRAAVPAVRREIPNTDLAELGARTFEAE 440 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------ 580 + + L + ++ Y DI+ K+ + +L +++ Sbjct: 441 LADGRWLQIS---ERRTKDGGYVSVGTDITTLKRHQERLVESERQLIATIADLKRSRRTL 497 Query: 581 -----------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + KS+FLA +SHE+RTPL AI+GF+EV++++ FG Sbjct: 498 ELQTQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQ 557 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 LG+ +Y EY I SG+ +L +++D+LD+S+IE+ ++ L +PV + EA+ A+ L+ Sbjct: 558 LGSEKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAE 617 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + + + +LAD R++ QI +N+L NA+ FTP G++ + T + V Sbjct: 618 PARAKGLTLSVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRRALDA-V 675 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V D+G+G+ L K PF Q+ ++ +G+GLGL +++++ + + G+ I S Sbjct: 676 HIFVEDSGIGIPKAVLPKLGAPFEQVESNFSRSFKGSGLGLAISRSLTELHGGRLRIRSE 735 Query: 798 PAKGTLIEIIFP 809 GT++ + P Sbjct: 736 VGCGTIVLVRLP 747 Score = 43.9 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 38/406 (9%), Positives = 96/406 (23%), Gaps = 32/406 (7%) Query: 86 TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142 W+ D A G + S+ + + +G + DV+ ++H D + + L Q+ Sbjct: 248 LWDWDIARGRI-YWSDSMYQLLGYVREHEF-LSFGDVNALVHPDDTDLYGLASQLAAQDA 305 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 ++ + A + ++ G GI+ D Sbjct: 306 TVDHEFRIRSAA-GEWIWLKARAEIVRDQDD--GGRHLVGIIIDISEQRRLAESTATADM 362 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + E + + + S H + Y A Sbjct: 363 RLRDAVEAVSEAFVLWDAQNRLVLCNSKFRRLHALTLEEAQPGRRYDAIMGRAAVPAVRR 422 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + + + F + + ++ S + Sbjct: 423 EIPNTDLAELGARTFEAELADGRWLQISERRTKDGGYVSVGTDITTLKRHQERLVESERQ 482 Query: 321 LTPETVDK--------CPIPFFVYSHGNLFYANPSFLLLTKYKSVDD----IEIAGGLST 368 L D + KS E+ L+ Sbjct: 483 LIATIADLKRSRRTLELQTQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNA 542 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 +L ++ + + I+ + L++ + + + Sbjct: 543 ILGFAEVMQDEVFGQL-------GSEKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRV 595 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINRE 471 + K+ E + L +E ++D + + + Sbjct: 596 TLVKQPVPVAEALERALKLIAEPARAKGLTLSVEMSADAVVLADER 641 >gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB [Paenibacillus sp. JDR-2] Length = 606 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 119/565 (21%), Positives = 225/565 (39%), Gaps = 39/565 (6%) Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310 + ES ++ + L++ S + + Sbjct: 67 RRLMIEKAKLGESVQGQETFKLRKDGTMLYISLSLTALRDESGTIIGVVGFERDISDRIK 126 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 + A E E+L D FV G + YANP L Y + + +++ L+ L+ Sbjct: 127 MEASLFEAESLYSHLADSALAGVFVGQGGRILYANPYLAALYGYTNEELLQVE--LNKLM 184 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 +L V L D+ I + ++ + P Sbjct: 185 LPGELEVVTRDAQVTL--MDQKQIYFHFNITGVKKDGSPVHLEGNSCLISFQGKPAL--- 239 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PV 489 G + + +R + I++ + I +I+ G I+ N+ KL G Sbjct: 240 LGTVQDITIKKEKERSLRDSANMYQRIIKFLPEPIVLID-NGEIVYANKLAVKLIGAADD 298 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ +P +++ + L +++ D + + + + + ++ Sbjct: 299 SEMVGRPILDYVDPAYSDDLMDVLYKVIHTDDPTNF-IENKLLCNDGQTIDVEMSSIRIH 357 Query: 550 FSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + D+++ K+ + L ++K++ A V+HEIR PLTA+ GF Sbjct: 358 NYRGKMVILTVIRDLTDRKRSEEMLVRSEKLSV-----IGQLAAGVAHEIRNPLTALKGF 412 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++++K++ G Y + + + + IVN+ + ++K K + LD Sbjct: 413 TQLLKSKAEGNSF------YYDIMTNELDRINFIVNEFMTLAKPHFSKFSTRR----LDH 462 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + IS+++ A + IRT F N IP I D +KQ+ +NI+ NAI P GGQI Sbjct: 463 ILHAVISILETQAILMNVSIRTEFENCIPSIYCDENQLKQVFINIIKNAIEAMPLGGQIT 522 Query: 727 ISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 IS +E V L +RD G+G+ + + + +PF + +GTGLGL ++ ++ Sbjct: 523 ISAAMESDHERVRLTIRDEGMGIPDEIIRQIGQPFITT------KEKGTGLGLMISSRII 576 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G I S P +GT IEII PL Sbjct: 577 EQHQGLMNISSVPGEGTTIEIILPL 601 Score = 90.9 bits (224), Expect = 8e-16, Method: Composition-based stats. Identities = 45/386 (11%), Positives = 119/386 (30%), Gaps = 21/386 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147 ID + +++ G ++IG C + + ++ + + K + G +T Sbjct: 27 IDLDENILDVNPGFVALHGWTREELIGRPCC-FTPVHLLEERRLMIEKAKLGESVQGQET 85 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +GT LY+ L+ + + G GF A + +SHL Sbjct: 86 FKLRKDGTMLYIS--LSLTALRDESGTIIGVVGFE--RDISDRIKMEASLFEAESLYSHL 141 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTS 264 + V + +++ N+ L + + + T + Sbjct: 142 ADSALAGVFVGQGGRILYANPYLAALYGYTNEELLQVELNKLMLPGELEVVTRDAQVTLM 201 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN---- 320 ++ + + + + + + + L ++ + Sbjct: 202 DQKQIYFHFNITGVKKDGSPVHLEGNSCLISFQGKPALLGTVQDITIKKEKERSLRDSAN 261 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + + P P + +G + YAN + L ++ L P SD+ Sbjct: 262 MYQRIIKFLPEPIVLIDNGEIVYANKLAVKLIGAADDSEMVGRPILD--YVDPAYSDDLM 319 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + +D + + + N ++ + N + + + + D Sbjct: 320 DVLYKVIHTDD---PTNFIENKLLCNDGQTIDVEMSSIRIHNYRGKMV-ILTVIRDLTDR 375 Query: 441 RINKRKMEIEVMQLCSILEATSDGIA 466 + ++ + + +L S++ + G+A Sbjct: 376 KRSEEML-VRSEKL-SVIGQLAAGVA 399 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 10/143 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 + SI DGI +I+ + IL N L G+ E+++ +P + Sbjct: 13 MESIWNNIPDGIVVIDLDENILDVNPGFVALHGWTREELIGRP--CCFTPVHLLEERRLM 70 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569 E L + T K+ +L + + + L S DIS+ + + Sbjct: 71 IEKAKLG-ESVQGQETFKLRKDGTMLYISLSLTALRDESGTIIGVVGFERDISDRIKMEA 129 Query: 570 KLSHAKKIAEKESSHKSDFLARV 592 L + S LA V Sbjct: 130 SLF---EAESLYSHLADSALAGV 149 >gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 788 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 141/630 (22%), Positives = 250/630 (39%), Gaps = 54/630 (8%) Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287 QSP H V+ + ++ LL + T Sbjct: 156 QSPALHGMSPASVADIVLLDGSGALAVQRAIRSLLGQVTVIQEADAVWRPDTALSITLSA 215 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYAN 345 G + +F + S R D +++ + + G + + + Sbjct: 216 TTGFVVLILGFAFHWQSTRAREG-DLINDAVRGRIDTALNRGRCGLWDWDLSRGRI-FWS 273 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 S L +S D+ G +S+L+++ + ++ + D + R + W Sbjct: 274 QSMFTLLGLESRSDLLAFGEVSSLVNSEDIDLFEIADELISGKIDHIDQSFRMRHSSGHW 333 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + N GI + + + K ++L +E+ + Sbjct: 334 -----IWLRVRCELSQNASG-GAHLIGIAVDVTEQKSLAEKSVEADLRLRDAIESIPEAF 387 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + + + ++ N +L P ++ P+ +E + + Sbjct: 388 VLWDADDRLVLCNSHFQRLHKLPDSAVVVGTPYETVVEVGRMPEIRA---RQPETGTVTS 444 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL------------- 571 + L + ++ Y DI+ K+ + KL Sbjct: 445 EAHTFDVQLADGNWLHIS---ERRTKDGGYVSVGTDITRIKEHEQKLVENDLRLRATVID 501 Query: 572 ----------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + K AE + KS FLA +SHE+RTPL AIIGFSE+ Sbjct: 502 LKRTQATLERQALKLADLAQKYADQKNRAEDANRAKSKFLANMSHELRTPLNAIIGFSEI 561 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + N FG LG+ +Y EY I SG +L+++ND+LD+SKIE+G+MNL E L + Sbjct: 562 MSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRMNLDMEAFDLTGVLD 621 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 E++ +V ++K + + I I+AD R+VKQI +N+LSNAI FTP GG+I+ + Sbjct: 622 ESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVKQILVNLLSNAIKFTPDGGRIMARS 680 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 N + L + DTG+G+ ++ L K KPF Q+ + G+GLGL +AK++V+ + Sbjct: 681 KIFEN-FITLTIADTGIGIASHALRKLGKPFEQVESQLTKTHAGSGLGLAIAKSLVNLHN 739 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 G + S P GT++ + P + + C Sbjct: 740 GSMKLRSKPGVGTVVRVTLPRHCQARTAIC 769 >gi|332702803|ref|ZP_08422891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552952|gb|EGJ49996.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 784 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 124/622 (19%), Positives = 227/622 (36%), Gaps = 33/622 (5%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-YAHKDDVLKTEKY 259 + + + V + I ++ L + + + T + Sbjct: 18 ARYRTLFRAVSDSLFVVRQRDGRILDVNEAAVAQYGYSREEFLEMHNVDVSVEPVMTTEA 77 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L E L + L + + + E Sbjct: 78 TLSVRERIPLRYHRRKDGTAFPVEITAKTV-QLNAETLIVSSTRDISERQRMEDALRDSE 136 Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +D P P ++ Y N + + D + + D + + Sbjct: 137 QRFHAFMDTIPAPAWITDEQHRYLYINKPTMEQMGGRREDYLGRSAW-----DVFPIEEQ 191 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMPQNGIEPED 437 R+ + + + P A+ G+ + Sbjct: 192 LNSYMEHARRAMQAGHPLREEADYPLTDGSLRRWVRYIFPIHTADGH---RLIGGVAFDI 248 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + + +L SI E +S GI +G L N A + + GY + + Sbjct: 249 SERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQGRFLEANPATASILGYSSPEESIREV 308 Query: 498 TVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 Q + +L + RQ + K +L+LRI + + + Sbjct: 309 KDIGSQVYVNPEQRDAIMRMLLEERRQHVTTEIQVRHKSGSILTLRINMHPVWDENGRPR 368 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + D++E + + +L AK AE + KS+FLA +SHEIRTP+ I+G EV Sbjct: 369 YLEGFVEDMTERVRMERELRAAKSAAEAANLAKSEFLATMSHEIRTPMNGILGMVEVAMR 428 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q P + + +S +LDI+ D+LD S+IE+GKM + L E + + Sbjct: 429 QEPSPA----VTQSLRLVRQSARALLDIIGDILDFSRIEAGKMERKEQRFLLRELLRPTL 484 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729 L+ A +K + + A ++P +L D S++Q+ +N+L NAI FT G ++ + Sbjct: 485 DLLAQTAVDKGLRLSKHIARDVPEALLGDAASLRQVLVNLLGNAIKFTHEG-EVALDVDL 543 Query: 730 ---THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + V LR V D+G+G+ +L+ +PFGQ+ + GTGLGL ++ + Sbjct: 544 AEPSAKDSGYVRLRFTVSDSGIGIPEDKLQTIFEPFGQLDGA---SYAGTGLGLSISAKL 600 Query: 785 VDANMGKFYIFSTPAKGTLIEI 806 V G+ + STP KG+ Sbjct: 601 VALLGGRLEVRSTPGKGSRFSF 622 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 39/401 (9%), Positives = 105/401 (26%), Gaps = 32/401 (7%) Query: 62 VSNTNYLDSENTFVFDPIPRTVR---FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 + + L SE+ + + R V F G + +++E G + + M Sbjct: 6 PPDVSCLHSESEARYRTLFRAVSDSLFVVRQ-RDGRILDVNEAAVAQYGYSREEFLEMHN 64 Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178 DVS + + + P+++ A + Sbjct: 65 VDVSVEPVMTTE-------ATLSVRERIPLRYHRRKDGTAFPVEITAKTVQLNAETLI-- 115 Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLR 235 + +++F + + + E++ P R Sbjct: 116 --VSSTRDISERQRMEDALRDSEQRFHAFMDTIPAPAWITDEQHRYLYINKPTMEQMGGR 173 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-----FG 290 ++ + ++ L + + ++ P +E+ + ++ Sbjct: 174 REDYLGRSAWDVFPIEEQLNSYMEHARRAMQAGHPLREEADYPLTDGSLRRWVRYIFPIH 233 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFL 349 T + E + + F G ANP+ Sbjct: 234 TADGHRLIGGVAFDISERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQGRFLEANPATA 293 Query: 350 LLTKYKSVDD-IEIAGGL-STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + Y S ++ I + S + P+ D +M + + + ++ Sbjct: 294 SILGYSSPEESIREVKDIGSQVYVNPEQRD-----AIMRMLLEERRQHVTTEIQ-VRHKS 347 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + L + ++ G + + +R++ Sbjct: 348 GSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELR 388 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 36/316 (11%), Positives = 78/316 (24%), Gaps = 25/316 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLL--KRQN 141 + G E + +G + + + D+ ++++P + I +L +R+ Sbjct: 276 IFRSTPQGRFLEANPATASILGYSSPEESIREVKDIGSQVYVNPEQRDAIMRMLLEERRQ 335 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + G+ L + I++ P++ N GF V + Sbjct: 336 HVTTEIQVRHKSGSILTLRINMH--PVWDENGRPRYLEGF--VEDMTERVRMERELRAAK 391 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + K + + +R A + + L Sbjct: 392 SAAEAANLAKSEFLATMSHE------------IRTPMNGILGMVEVAMRQEPSPAVTQSL 439 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 +S+ + I + + E L D+G L Sbjct: 440 RLVRQSARALLDIIGDILDFSRIEAGKMER-KEQRFLLRELLRPTLDLLAQTAVDKGLRL 498 Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P G+ + L E L L P D+ + Sbjct: 499 SKHIARDVPEALL----GDAASLRQVLVNLLGNAIKFTHEGEVALDVDLAEPSAKDSGYV 554 Query: 382 KPVMLYRSDRTCIAAS 397 + I Sbjct: 555 RLRFTVSDSGIGIPED 570 Score = 55.0 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 32/300 (10%), Positives = 73/300 (24%), Gaps = 23/300 (7%) Query: 46 HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105 ++ S+ D ++ DSE F W D I++ + Sbjct: 111 AETLIVSSTRDISERQRMEDALRDSEQRFHAFMDTIPAP-AWITDEQHRYLYINKPTMEQ 169 Query: 106 IGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 +G +G DV I H ++ + + +G+ L + Sbjct: 170 MGGRREDYLGRSAWDVFPIEEQLNSYMEHARRAMQAGHPLREEADYPLTDGS-LRRWVRY 228 Query: 164 AALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---------- 212 PI++ + G G+ + ++K + E Sbjct: 229 -IFPIHTADGHRLIG----GVAFDISERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQG 283 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 I SP +R + S + D + LL + + Sbjct: 284 RFLEANPATASILGYSSPEESIREVKDIGSQVYVNPEQRDAIMRM---LLEERRQHVTTE 340 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + T + + + + + + + + Sbjct: 341 IQVRHKSGSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELRAAKSAAEAANLA 400 >gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115] gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115] Length = 1416 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 105/811 (12%), Positives = 249/811 (30%), Gaps = 98/811 (12%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQ-NTWY 144 + G +I+ +G +++G L DV+ P L+ + + + Sbjct: 619 RVLPDGRWLDINPAGEALLGYTREELLGRTLLDVTHPDDRGPEGTRPFRRLVAGEVDAFS 678 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G ++ + ++A + I++ L + +++F Sbjct: 679 QEKRYVRKDGQLVWTKVTVSA--VRDEAGATQYV--VAILNDISEQKKAEDLLRASEERF 734 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 L +V + + + + ++ Sbjct: 735 RQLVGSSPTGIAVGSIDGTLRFPNAAYLEMLGFTLEDFDAGLVNWAALTPPEYRSADENA 794 Query: 261 LLTSEESSLPEQEDFHTIN----------------------------------LNQYTKK 286 + ES + + ++ Q T + Sbjct: 795 FRQAFESGVSRPYEKEMLDRYGRRVPVGLVLTRYEQHDETFVVGYVQDLTLHKAAQRTLR 854 Query: 287 QYFGTLQNNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKC-----PIPF 333 ++ L+ E L + L+A LT VD P+ Sbjct: 855 EHGEELERRVAERTHALEEQRAALDAFVRFTELAAAATGLAELTRHAVDVLRATIGPVSV 914 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 Y ++ + ++ ++ I L A + D A Sbjct: 915 AYYERHDMLWKAVTWSEDIPEVALAMIRGGVPLDQPSFAQVVQDQQAFYMEEWDAQGEQL 974 Query: 394 IAASAR----LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKR 445 L+ + + + F + P + ++ R Sbjct: 975 GGFRMYGAGALYPFFIDGQAHGLLNMASFSQRTWTPRDKAIFRAVGRSFALALERREQTA 1034 Query: 446 KMEIEVMQL--------------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 ++E + +L ++LE+ ++GI + +G + N G E Sbjct: 1035 QLEAQKAELDMRTQALEQDQGFLRTLLESLTEGIVACDAQGHLTVFNDVTRAFHGLGPEP 1094 Query: 492 ILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 + + + + L + + + ++ Sbjct: 1095 LPPAAWAERFDLYREDGVTPLPTEEIPLFRAFQGQRVRDQGMVIAPKNGPRRWINANGNP 1154 Query: 546 --KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + M D++ +Q + +L ++ ++ F A SH++++PL I Sbjct: 1155 MYSLTGEKLGAVIAMQDVTARRQAEQELQRVNVELQRSNADLEHFAAVASHDLKSPLRTI 1214 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + +R + R + Y + + + +++DLL +++ + + V Sbjct: 1215 RSYLE-LIERRLTGQLDERSMRYMGFATEAAARMDTLIDDLLAYARVGRQR---NITRVE 1270 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 V E + + E+ IR ++ + AD ++Q+ N++ NA+ F P G Sbjct: 1271 PQRVVQEVLGGLTASIQERGAQIRV---GDLMPVQADESQLRQVFQNLVGNALKFQPEGR 1327 Query: 724 QIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + V+ +VRD G+G++ E+ F Q+ + G+GLGL + + Sbjct: 1328 VPEVMIDATRDGRYVLFQVRDNGIGISEEYYERVFALFQQLHG--KSEFPGSGLGLAIVR 1385 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +++ + G+ ++ S +GT P DT Sbjct: 1386 KIIEEHDGRIWLTSVVGEGTTFHFTLPSSDT 1416 Score = 144 bits (362), Expect = 8e-32, Method: Composition-based stats. Identities = 42/412 (10%), Positives = 107/412 (25%), Gaps = 16/412 (3%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLT 244 + A + ++++ L + + + Q R + + Sbjct: 465 DNARRYATVRTGEERYRSLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWA 524 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 D + + S + + + E+ Sbjct: 525 AVLHPDDQERSVAAWHQAVASASPYEINQRVRVADGSYRHFHVRVVPALGQDGSVREWTG 584 Query: 305 ----HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359 + E V+ + V G NP+ L Y + Sbjct: 585 VHTDITERVRAEQELRDREERYRVLVEYAAVGVARVLPDGRWLDINPAGEALLGYTREEL 644 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + TLLD D R + A ++ + Sbjct: 645 LGR-----TLLDVTHPDDRGPEGTRPFRRLVAGEVDAFSQEKRYVRKDGQLVWTKVTVSA 699 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ I + + + + + + ++ ++ GIA+ + +G + N Sbjct: 700 VRDEAGATQYVVAILNDISEQKKAEDLLRASEERFRQLVGSSPTGIAVGSIDGTLRFPNA 759 Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 A ++ G+ +ED + S + + + + EK L Sbjct: 760 AYLEMLGFTLEDFDAGLVNWAALTPPEYRSADENAFRQAFESGVSRPYEKEMLDRYGRRV 819 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + L + + + + D++ K + L + E+ + ++ L Sbjct: 820 PVGLVLTRYEQHDETFVVGYVQDLTLHKAAQRTLREHGEELERRVAERTHAL 871 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 50/395 (12%), Positives = 114/395 (28%), Gaps = 19/395 (4%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 L + L F EI V + + P + H+ Sbjct: 356 AQKEELLRSLLNHFPSDPEIYGTSGWVVRTGESVLIPVIPAAMVES-------LPTEVHR 408 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 D + + L+ + + + ++ L+ + S ++ Sbjct: 409 DAMRNLGFHSLILVPMTVRGRRTGVLGVATTHPSRTFVHDDLELARQLSERAALALDNAR 468 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 A GE VD + + G L P + LT ++ E G + L Sbjct: 469 RYATVRTGEERYRSLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTR-EEYEGFGWAAVL 527 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + A + S ++ + Q Sbjct: 528 HPDDQERSVAAWHQAVASAS-----PYEIN-QRVRVADGSYRHFHVRVVPALGQDGSVRE 581 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 G+ + + ++++ + ++E + G+A + +G L N A L GY Sbjct: 582 WTGVHTDITERVRAEQELRDREERYRVLVEYAAVGVARVLPDGRWLDINPAGEALLGYTR 641 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E++L + + L + K+ +L+ ++ + + Sbjct: 642 EELLGRTLLDVTHPDDRGPEGTRPFRRLVAGEVDAFSQEKRYVRKDGQLVWTKVTVSAVR 701 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + ++DISE K+ ++ L +++ + Sbjct: 702 DEAGATQYVVAILNDISEQKKAEDLLRASEERFRQ 736 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 35/381 (9%), Positives = 90/381 (23%), Gaps = 21/381 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W G L + G + G V + + + Y Sbjct: 491 VWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWAAVLHPDDQERSVAAWHQAVASASPYE 550 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + +P ++ + G + + ++++ Sbjct: 551 INQRVRVADGSYRHFH-VRVVPALGQDGSVREWTG--VHTDITERVRAEQELRDREERYR 607 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-- 260 L E + + + H DD P Sbjct: 608 VLVEYAAVGVARVLPDGRWLDINPAGEALLGYTREELLGRTLLDVTHPDDRGPEGTRPFR 667 Query: 261 -LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYF 315 L+ E + +++ + + K +++ + + ++ N S Sbjct: 668 RLVAGEVDAFSQEKRYVRKDGQLVWTKVTVSAVRDEAGATQYVVAILNDISEQKKAEDLL 727 Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E + V P V S G L + N ++L + + ++D + L P+ Sbjct: 728 RASEERFRQLVGSSPTGIAVGSIDGTLRFPNAAYLEMLGFT-LEDFDAGLVNWAALTPPE 786 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + G Sbjct: 787 YRSADEN-AFRQAFESGVSRPYEKEML-----DRYGRRVPVGLVLTRYEQHDETFVVGYV 840 Query: 435 PEDVDTRINKRKMEIEVMQLC 455 + + +R + +L Sbjct: 841 QDLTLHKAAQRTLREHGEELE 861 Score = 75.8 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 62/606 (10%), Positives = 145/606 (23%), Gaps = 96/606 (15%) Query: 70 SENTFVFDPIPRTVRFTWN------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 F P FT + +D + + L IG +G L +V Sbjct: 2 IGEAFTAPPGLFEAVFTHSSCAMGVLDRSLQIVSGNPALAALIGQPLHAFVGRPLAEVFG 61 Query: 124 ILHIDPNNHIGDLLKRQNTWYGK-------------TTLWPIEGTNLYVP--IDLAALPI 168 L +L+ ++ T +P+ T + I AL Sbjct: 62 PLPAHVLEAYDQVLQGGSSQKELTFPTSQNPHQLLSTIAYPVAETPAGITGLIATFALAH 121 Query: 169 YSRNREFSG--------------FRGFGIVHVNRVDNDPRA-----LGKRLDKKFSHLHE 209 + G + V P R+ K E Sbjct: 122 KDTWQTPEHSCQLAKLGHSLATALTGNDVSRVILEQAGPILGAYGGTLIRVLDKHMLYME 181 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS- 268 G+ + ++ + F +S P ++ ++ + LL + Sbjct: 182 GSFGYGTQVEDTWQPFPTESGYPVVQAVENRDAVFVTVSELPQRFPAIVPLLLPETRAIA 241 Query: 269 -LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 LP + ++ + + + E + A + + L E Sbjct: 242 VLPLLSEQGVPSVLSLSFRDEQDIAADRRDFMLELAALCARALERARRYDADLLARERAT 301 Query: 328 KCPIPFFVYSH--------GNL----FYANPSFLLLTKYKSVDDI---------EIAGGL 366 + S + + + + I L Sbjct: 302 LLANASSLLSASLDVQETLQRITSLAIEHVADWCAVYQPDDTGRICPVVVAHKDAQKEEL 361 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCI-----------AASARLHTIQWNRENSLAMTF 415 L SD + + +H ++ Sbjct: 362 LRSLLNHFPSDPEIYGTSGWVVRTGESVLIPVIPAAMVESLPTEVHRDAMRNLGFHSLIL 421 Query: 416 IPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIE-----------------VMQLC 455 +P + + P D R++ + Sbjct: 422 VPMTVRGRRTGVLGVATTHPSRTFVHDDLELARQLSERAALALDNARRYATVRTGEERYR 481 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S+++AT + +G +L ++L G E+ + L + + Sbjct: 482 SLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWAAVLHPDDQERSVAAWHQ 541 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSH 573 ++ + + + + +R++ + ++ DI+E + + +L Sbjct: 542 AVASASPYEINQRVRVADGSYRHFHVRVVPALGQDGSVREWTGVHTDITERVRAEQELRD 601 Query: 574 AKKIAE 579 ++ Sbjct: 602 REERYR 607 >gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 1407 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 113/677 (16%), Positives = 214/677 (31%), Gaps = 75/677 (11%) Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 A+ + + + +++ + M + + Sbjct: 343 QAAAVLRESENRLRKALDVQNVGVMFWDVTSGTLIDANDTFLKIMGYSRQEVDAHQLTWQ 402 Query: 252 D-------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + + P ++++ + ++ L N + + Sbjct: 403 TFTPPEYIETSIAEMESFRANGRVGPYEKEYLRKDGSRQWFVFAGSALDENRCVEYC-ID 461 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIE 361 + E E + + + V S L N + + Y +E Sbjct: 462 VSGQKRAESALAESEERLRLALQATNLGLYDLNVQSGEALV--NAEYAAMLGYAPETFVE 519 Query: 362 -IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 A + + D + + ++ Sbjct: 520 TNAAWIERIHPD----DREITARAYADYVAGRTAQYRVEFRQKTRDGDWKWILSLGKIVA 575 Query: 421 ANQFPENMPQNGIEPEDVDTRINK------------------------RKMEIEVMQLCS 456 + + + G + + + + R+ E + QL Sbjct: 576 FDDAGKPLRMLGTHTDITERKRAEASVAQHARELERGRQALLSVLQDQRRAETSLRQLAL 635 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E + + I I N I N A GY E ++ + + TP + Sbjct: 636 AVEQSPESIVITNLSAEIEYVNAAFLATTGYTREQVIGRNPRILQSGRTPRATYDAIWAA 695 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 L+ QT + + + I L Y DI+E K+ +L Sbjct: 696 LT--AEQTWKGELVNRKASGEDYVEFAHIAPLRQPDGRISHYVAVKEDITEKKRLGEELD 753 Query: 573 HAKKIAEKESSH------------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + E + KS FLA +SHEIRTP+ AIIG + +++ Sbjct: 754 RHRHHLEDLVTQRTAELAQARQQAEAASQAKSAFLANMSHEIRTPMNAIIGLTHLLRKDG 813 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 P + R I+ SG +L ++ND+LD+SKIE+GK++L E L + SL Sbjct: 814 VTPQQDGR----LEQIEASGRHLLGLINDILDLSKIEAGKLDLALEDFHLSAVLDHVASL 869 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ A K + I + D ++Q N+ NA+ FT G I++ + Sbjct: 870 IRPSAQSKGLHIELDGDAVPTWLRGDPMRLRQCLFNLAGNAVKFTERGS-IVLRAKLLKD 928 Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +V V DTG+G+T + ++ F Q + GTGLGL L + + G Sbjct: 929 GAEGLQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKYGGTGLGLALTRNLAQMMGG 988 Query: 791 KFYIFSTPAKGTLIEII 807 + + S P +G+ Sbjct: 989 EAGMDSIPGEGSTFWFT 1005 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 40/433 (9%), Positives = 97/433 (22%), Gaps = 35/433 (8%) Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216 VP L + + + R AL ++ + E G ++ Sbjct: 83 QDVPQAARYLQRPDDAQALESVQAWMSGIQQRHGYRAVALFDAAGERCLAVPETYCGDAA 142 Query: 217 VEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 + + + + ++ + V + + + Sbjct: 143 NLAHGREHVRRNRLAREVSFSDLHRLPDQSIQMIFAAQVGLSSQAGEPAIGMLLVVIDPR 202 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 L Q + + L N A L T P Sbjct: 203 RFLYPLIQRWPTPSASAETILIRREGDELVSLNDLRHRADSALRLRLPIATNPLLPAAMA 262 Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 V + + V + + K+ ++ PV Sbjct: 263 VQGVQGVVEGVD-----YRGTPVLAVVRRVMNTPWFMVAKVDEDEIHAPVR--------- 308 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + + + + V + + +L Sbjct: 309 -------------RQAWTTGLLSVLLMLLASLGVALLWRQQRLVSAQQAAAVLRESENRL 355 Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNH 511 L+ + G+ + G ++ N K+ GY +++ T F Sbjct: 356 RKALDVQNVGVMFWDVTSGTLIDANDTFLKIMGYSRQEVDAHQLTWQTFTPPEYIETSIA 415 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + EK L + + + D+S K+ ++ L Sbjct: 416 EMESFRANGRVGPYEKEYLRKDGSRQWF---VFAGSALDENRCVEYCIDVSGQKRAESAL 472 Query: 572 SHAKKIAEKESSH 584 + +++ Sbjct: 473 AESEERLRLALQA 485 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 41/147 (27%), Gaps = 5/147 (3%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153 ++ ++ T G ++IG + + I L + TW G+ Sbjct: 653 IEYVNAAFLATTGYTREQVIGRNPRILQSGRTPRATYDAIWAALTAEQTWKGELVNRKAS 712 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G + P+ + S + + R L + Sbjct: 713 GEDYVEF--AHIAPLRQPDGRISHY--VAVKEDITEKKRLGEELDRHRHHLEDLVTQRTA 768 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + +++ + SQ M +++ Sbjct: 769 ELAQARQQAEAASQAKSAFLANMSHEI 795 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 32/403 (7%), Positives = 89/403 (22%), Gaps = 67/403 (16%) Query: 97 EISEELPKTIGNYAFKMIGMR--LCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIE 153 ++ E +G + + + D + + Y Sbjct: 501 LVNAEYAAMLGYAPETFVETNAAWIERIHPDDREITARAYADYVAGRTAQYRVEFRQKTR 560 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLDKKFSHLHE 209 + + L + + + R G A + L++ L Sbjct: 561 DGDWKWILSLGKIVAFDDAGKP--LRMLGTHTDITERKRAEASVAQHARELERGRQALLS 618 Query: 210 IKKGHSSVE----------------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + + E + + + + +V Sbjct: 619 VLQDQRRAETSLRQLALAVEQSPESIVITNLSAEIEYVNAAFLATTGYTREQVIGRNPRI 678 Query: 248 AHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + + E + + + Y + + L+ Y++ Sbjct: 679 LQSGRTPRATYDAIWAALTAEQTWKGELVNRKASGEDYVEFAHIAPLRQPDGRISHYVAV 738 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + E + ++ + + + Sbjct: 739 KEDITEKKRLGEELDRHRHHLEDL-----------VTQRTAELAQARQQAEAASQAKSAF 787 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L+ + + N I L R D RL I+ + Sbjct: 788 LANMSHEIRTPMNAIIGLTHLLRKDGVTPQQDGRLEQIEASGR----------------- 830 Query: 426 ENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGI 465 G+ + +D + + +E L ++L+ + I Sbjct: 831 ---HLLGLINDILDLSKIEAGKLDLALEDFHLSAVLDHVASLI 870 >gi|219852263|ref|YP_002466695.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219546522|gb|ACL16972.1| PAS/PAC sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 781 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 115/738 (15%), Positives = 255/738 (34%), Gaps = 63/738 (8%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + + +IG L D + +LL R T G+ + Sbjct: 75 GMILYANTAFVAMRRQRLSAIIGTSLRDHIAPRD---RSRFDELLTRSLTGPGRGEMLVC 131 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G P+ ++ PI G +V +D + RL + L + Sbjct: 132 SGAGS-FPVLVSMTPIM-----VDGSPKLSVV-----ISDRKEDYDRLHLQSRMLDAVAD 180 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + I+ S K + SL E + ++ ++ Sbjct: 181 AVIATDPAGRIIYWNWSATRTYGWKEAEAMGQSLNEAVVRELSQDDADRMAEQLGSGNAW 240 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----- 324 + H + + + + + E + + S + + Sbjct: 241 SGEFQVHHRDGHLFPIHVNQAPVFDEDGEFVAVIGTSHDISERKAIERALAESEAEARSF 300 Query: 325 ---TVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 VD C I VYS L N + + + G + P+L Sbjct: 301 MDNMVDACAICETVYSPDGKPIDIRLVEVNAALAQELGRPAAE----IAGWTAFKIRPEL 356 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + + ++R+ + + + P + Sbjct: 357 TLPWFDRFLEVHRT-GAAMQFEEPFPVV----GRWYRIAAFPVRGG-------RVAVVFH 404 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + + + S++E + D + + +G IL+ N S++FG E++++ Sbjct: 405 NITERKQAEEALAESEDRYRSLVEKSIDAVLLSLPDGSILAANAGASQIFGMTEEELIQA 464 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 ++++ P Y + K+ L + + Sbjct: 465 GRASLIDESDPRFTAAYEERARTGR----FSGELTYRRKDGTLFPGEVTSALFTDRNGAI 520 Query: 556 L---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + DI++ K+ + L + + + F SH+++ PL +I+ FS+ + + Sbjct: 521 MSTMIIRDITKRKEIEESLKIYSERLQVSNEELQRFAYIASHDLQAPLRSIVSFSQ-LLD 579 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 +R+ + +Y +I G + +++ DLL +S+IE+ + F P V++ I Sbjct: 580 RRYRGKFDKDADDYIRFIVDGGVRMQNLIKDLLLVSRIETQVQS--FAPTDARTVVADTI 637 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTH 731 ++ E ++ +P ++AD ++Q+ N++ NAI + P ++ + Sbjct: 638 RSLETLILEIGAVVTVD---PLPIVMADPPQLEQVFTNLIGNAIKYRRPEVPVVVWVSAV 694 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 VRD G+G+ ++ + F ++ + EGTG+GL + + +V + GK Sbjct: 695 RQGGWWEFAVRDNGIGIEPEYFDQIFEMFSRL--QTKDEYEGTGIGLAIVRKIVARHGGK 752 Query: 792 FYIFSTPAKGTLIEIIFP 809 ++ STP KG++ P Sbjct: 753 IWVESTPGKGSIFHFTLP 770 Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats. Identities = 41/378 (10%), Positives = 100/378 (26%), Gaps = 26/378 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G + + +T G + +G L + V L D + + + L N W G+ Sbjct: 185 TDPAGRIIYWNWSATRTYGWKEAEAMGQSLNEAVVRELSQDDADRMAEQLGSGNAWSGEF 244 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206 + +G PI + P++ + EF G H + + Sbjct: 245 QVHHRDGHLF--PIHVNQAPVFDEDGEFVAV--IGTSHDISERKAIERALAESEAEARSF 300 Query: 207 ---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-----DDVLKTEK 258 + + +V + + + ++ A L Sbjct: 301 MDNMVDACAICETVYSPDGKPIDIRLVEVNAALAQELGRPAAEIAGWTAFKIRPELTLPW 360 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + + + ++ + + + + E Sbjct: 361 FDRFLEVHRTGAAMQFEEPFPVVGRWYRIAAFPVRG-GRVAVVFHNITERKQAEEALAES 419 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E+ V+K + G++ AN + + I+ G ++L+D Sbjct: 420 EDRYRSLVEKSIDAVLLSLPDGSILAANAGASQIFGMTEEELIQ--AGRASLIDESDPRF 477 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 A + + T + ++ M I + Sbjct: 478 TAAYEERARTGRFSGEL-------TYRRKDGTLFPGEVTSALFTDRNGAIMSTM-IIRDI 529 Query: 438 VDTRINKRKMEIEVMQLC 455 + + ++I +L Sbjct: 530 TKRKEIEESLKIYSERLQ 547 Score = 46.6 bits (109), Expect = 0.020, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 8/157 (5%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + R +E ++E +G + G+IL N A + Sbjct: 32 GEVDAIVVSKEGRKEIYTLEGADHLYRVLVEKIQEGALTLTVTGMILYANTAFVAMRRQR 91 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKK 547 + I+ + S + LT L+ R L + + + + Sbjct: 92 LSAIIGTSLRDHIAPRDRSRFDELLTRSLTGPGRG----EMLVCSGAGSFPVLVSMTPIM 147 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + S S+ IS+ K++ ++L ++ + + Sbjct: 148 VDGSPKLSVV---ISDRKEDYDRLHLQSRMLDAVADA 181 >gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 876 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 117/616 (18%), Positives = 214/616 (34%), Gaps = 60/616 (9%) Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 + + Y L E + + E + + ++++ Sbjct: 20 AAGIGAGYWRYLRARAELLAELTARVQGCAVAFHVAELQELTGAPAERESPVYASVKDRL 79 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 + SL Y L P D P A P+ T Sbjct: 80 GRLRTSDERQPRISLLRYLPANGTLLP-LADSAP---------RTDPAQPAPRTGTLPAR 129 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMT 414 + + A + + V Y + + E A+ Sbjct: 130 LSPGLEGVIETGYPTAEGPRQEDGGRWVSGYALIGPHTPGRPQHLIAFDLTAHEWYRALW 189 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINRE 471 A + ++ + + L ++ EA G I I++ Sbjct: 190 NTALGTAGYVWMLLLLPLAALVTTHRQLMQGEA------LRNLTEAMEQGHSPIMIVDLG 243 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 I N +L GY ++L + + F + + + T + Sbjct: 244 LRIEYANAKFCRLLGYSRRELLGREWRTFHGAEARPEIFADMVTTIRAGHPWTG--EWMM 301 Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K+ + LR I + + + D++E +Q + L AK+ AE K Sbjct: 302 PRKDGTVFPLRAAITPVKNRAGEIRSFVGVFEDMTEIRQTEALLREAKERAEAGDRAKGQ 361 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHE+RTPL I+GF+ ++ P +EY I S ++ + D+LD Sbjct: 362 FLATMSHEVRTPLNGIVGFASLLLETELTP----EQLEYVETIRTSSETLIQLTGDILDY 417 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 ++IESG++ L +P E V A+ L A K + + + +P I+AD+ ++Q Sbjct: 418 ARIESGRLKLEPQPCDPRECVENALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQ 477 Query: 707 IALNILSNAIHFTPSGGQIIISTTH-------------------------TSNEEVILRV 741 + +N+++NA+ FTP+G ++ + ++ + V Sbjct: 478 VIVNLVNNAVKFTPTG-EVAVDVRVVASSPAPETADAEALPSARETADAGEASCTLEFSV 536 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G+ K +PF Q+ +S R GTGLGL + K +V G S +G Sbjct: 537 RDTGIGIAPAHHPKIFRPFSQVDDSTTRRYGGTGLGLAICKNLVGLMNGHITFTSELGRG 596 Query: 802 T--LIEIIFPLYDTSH 815 + I P++ + Sbjct: 597 SRFTFTIRVPVHTPAA 612 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 21/258 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 +D ++ + + + +G +++G P + ++ + W G+ Sbjct: 240 VDLGLRIEYANAKFCRLLGYSRRELLGREWRTF-HGAEARPEIFADMVTTIRAGHPWTGE 298 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +GT P+ A P+ +R E F G+ AL + ++ Sbjct: 299 WMMPRKDGT--VFPLRAAITPVKNRAGEIRSF--VGVFEDMTEIRQTEALLREAKERAEA 354 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 K + + P + S L E + + E + Sbjct: 355 GDRAKGQFLATMSHEVR-------TPLNGIVGFASLLLETELTPEQLEYVETIRTSSETL 407 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L L+ + L+ + E + + + + +G L Sbjct: 408 IQLTGDI------LDYARIESGRLKLEPQPCDPRECVENALDLAATLALPKGVELLHWID 461 Query: 327 DKCPIPFFVYSHGNLFYA 344 D P V G L Sbjct: 462 DTVPAAI-VADVGRLRQV 478 >gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator [Vibrio parahaemolyticus AQ3810] Length = 873 Score = 337 bits (863), Expect = 6e-90, Method: Composition-based stats. Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 12/376 (3%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ QL + E D I I + +G I N A +L Y +E+++ K L+ Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562 L S+ + L TK ++ + + + + + + DI+ Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDIT 352 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + ++ + +LS A ++K + KS+FLA +SHEIRTP+ AI+G SE++ Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E + +S N ++ I+ND+LD SK+E+GK+ L E L V +L A++K Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468 Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + ++ D + QI LN++ NA+ FT G +++ + V Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESELGF-DFSV 526 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG+G+ L M F Q+ S R EGTGLGL ++K ++ G+ + S G Sbjct: 527 TDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNG 586 Query: 802 TLIEIIFPLYDTSHPH 817 + L S PH Sbjct: 587 SCFSFSLQLPKRSQPH 602 Score = 58.1 bits (139), Expect = 6e-06, Method: Composition-based stats. Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148 G + ++ + +++G ++ D N + ++ + + Sbjct: 257 PDGAIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +V ++L+ P++ N E R + + K Sbjct: 317 NYTKSQRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372 Query: 209 EIKKGHSSVEKEKYDIFSQQ 228 + K + + Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%) Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 E + + + G + + N +F LT+Y + + + G LL D + Sbjct: 240 QLAEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A +L +S R+ + ++ + ++ E + +E + D Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPY-WVELELSPVFDENGELLRFIAVERDITD 353 Query: 440 TRINKRKMEIEVMQ 453 R ++++ + + Sbjct: 354 RREMEKRLSSALDK 367 >gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 837 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 98/534 (18%), Positives = 207/534 (38%), Gaps = 28/534 (5%) Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD 358 + + + ++ + + + N + + Sbjct: 12 TAQSQPADLDTPATEASLYAQCYQNLLNVGQQGLCLLGRDRLIVHTNKTMADWLRVSPEA 71 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + L+ + + I ++ L+ + N ++ + Sbjct: 72 LYQTPFSQWVDLNDREKLEAFFIDV-------DQDGPSAITLNLVPDLGRNGRSVRVMGA 124 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 ++ + + D R +++ E+ +I T D + + +G + N Sbjct: 125 GLSDVGGVAGMGLALV-DLSDQRAMLQQLNHELTTYRNIANFTHDWESWFDAQGRVQWIN 183 Query: 479 RAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 AV ++ GY + S + + E + + + + Sbjct: 184 PAVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAVAHDVSLRIKHREGDL 243 Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + +SL + + ++ DISE ++ + L AK+ AE S KS FL+ +SH Sbjct: 244 RWVSLSLQPMLTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSH 303 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+TAI+G +E++ + E+ + I RSG+ +L++++D+L IS+ E + Sbjct: 304 EIRTPMTAILGVAELMSGTHLDRV----QREHVSIIRRSGDALLELIDDILVISQNEGAQ 359 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 +D + + + A EK I + + A +P R++ D ++Q+ +N++ Sbjct: 360 EGEKQVVFDVDHLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVG 419 Query: 714 NAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NAI F+ G +++I + V D G+G+ + E F Q+ ++ Sbjct: 420 NAIKFSEKG-EVVIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETES 478 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLIEIIFPLY---DTSHPHD 818 R GTGLGL + + +V+ G+ +FS P G+ PL + ++P + Sbjct: 479 RRFGGTGLGLTICRRLVNLMGGQLELLFSEPGVGSTFAFDIPLQPAMEQANPAN 532 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 5/138 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 DA G ++ I+ + + G + M D+ + + + + Sbjct: 174 DAQGRVQWINPAVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAVAHDVS 233 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +L + L+ P+ + E GFR + + + + Sbjct: 234 LRIKHREGDLR-WVSLSLQPMLTNAGEKLGFR--TSIRDISERREAEQALEAAKRSAETA 290 Query: 208 HEIKKGHSSVEKEKYDIF 225 + K S + Sbjct: 291 SKAKSRFLSTMSHEIRTP 308 >gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas paucivorans DSM 12260] Length = 877 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 124/702 (17%), Positives = 245/702 (34%), Gaps = 49/702 (6%) Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL---PIYSRNREFSGFR 179 + D +L+ + + G+ +P E L + ++ P++ +F GF Sbjct: 89 HPYNPDFQRW-ERVLRSRASIRGEVRTFPEEERELLESQGIRSILVVPVFLEE-QFWGFA 146 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 GF R ++ L ++ + + L+ + + Sbjct: 147 GFDDCRRERRFDEDEESVLSLAAAGIGAALVRSRM-----HRRMEEEVRERTRDLQRQGE 201 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V + + L S DF ++ + ++ ++ Sbjct: 202 VLRQEVAERQAGERRLRLQNRFLESLH---QISLDFLSLQDPREVERAILERARDLFGAR 258 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 YL S A P + P + + L Sbjct: 259 RAYLVSAETKSPGAPSPRYLRDVPPG-ETDPRHPWGGDL--------ASETLRGGIPRLR 309 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + GG L P L +A ++L D +A L Sbjct: 310 VRENGGTC--LGLPLLWGEDAAGALLLDLQDPGTPSAD-----------RLLLAHAFTDL 356 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 A + + + + R + +E + +++ GI + G ++ +N Sbjct: 357 AALSWRNASLHEALLKQLEEGRRTRAVLEESRERYRRLVDHAPLGIVRLEGGGRVVDSNA 416 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + +LF E + + + + + + L T + L Sbjct: 417 KLLELFDTTGERLADRDIFSR-PGRLLPEVLEAVRQCQQTRRPRVLSFAFPKGTGCKHLK 475 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLARV 592 + + + + D+++ + + L + S K +FLA + Sbjct: 476 AHLVPLGPEE----LLGVVEDVTDLVEAEKALWKRTEELSAASADLTRTARMKDEFLAHM 531 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL A++ +E + + G L N I+ G L ++ D+LD+SK+E+ Sbjct: 532 SHELRTPLGAMLNLAEALAEESLGTL-NEAQRRILQSIEECGRHFLSLIGDILDLSKVEA 590 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G+++L P+ + A++ + +K I + ++PR D + V+QI +N+L Sbjct: 591 GRLDLVRSPLDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLL 650 Query: 713 SNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 SNA+ FTP GG++ + V + V D G+G++ +L++ PF Q Sbjct: 651 SNAVKFTPQGGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSRSF 710 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 GTGLGL L MV+ + G + S P +G+ + PL + Sbjct: 711 SGTGLGLSLVLRMVELHGGGLQVESAPGEGSRFTVRLPLAEE 752 >gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200] Length = 621 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 89/422 (21%), Positives = 181/422 (42%), Gaps = 37/422 (8%) Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R ++ + S + ++ Q E + E + E +L Sbjct: 214 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 268 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L +DG+ +R G I N G +D++ KP T L + + + Sbjct: 269 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 323 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 +LS + + + +I + F S +HDI++ ++ + + Sbjct: 324 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 380 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSG 634 F++ VSHE+RTPLT++ + E + + G +P ++ + I Sbjct: 381 -----------QFVSNVSHELRTPLTSLRAYVEALND---GAWKDPNIAPKFLHVIQDET 426 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EKRILIR 687 ++ ++NDLL +S+++ G + E V+L++ V+ ++ + +K+ I+ Sbjct: 427 ERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSIK 486 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 F + + D + Q+ NI++NAI ++P GG I + + + VIL + D G+G Sbjct: 487 REFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLG 545 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + +L K F ++ ++ + GTGLGL ++K +V+A+ G+ + S G+ I Sbjct: 546 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYIS 605 Query: 808 FP 809 P Sbjct: 606 LP 607 >gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase [Cyanothece sp. PCC 7424] Length = 633 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 101/444 (22%), Positives = 189/444 (42%), Gaps = 28/444 (6%) Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + ++ A + ++ +T + N + + + Sbjct: 190 LSRSITEPLQQMTRATKQLAAGDLSQTITITSNDELEVLAESFNSMTSRLRELIARIQDR 249 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILST------NRAVSKLFGYPVEDILRKPF 497 ++ + ++L+A D I + N+EGI+L N P + I+ K Sbjct: 250 AEQLHQSESKNRALLDAIPDLILVFNQEGILLDCKCQTNENTP----LSLPFKSIIGKKI 305 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 ++ ++ ++ E L+ Q E + Sbjct: 306 DEVFAHDSAELLFFHIKEALTCKTLQVCEYEQFI----GDEKLYYETRIVVSGEGEVLAI 361 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI++ K + + AK+ AE + K+ FLA +SHE+RTPL I+G S+++ Sbjct: 362 IRDITKNKLAQAEWQQAKEAAEAANQAKTAFLASMSHELRTPLNGILGLSQLLLEDAQEA 421 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 +IE I++SG +L ++ D+LDISKIE+GKM L+ E + ++E ++ +Q Sbjct: 422 GYLD-FIEDLQQINQSGLHLLGLIEDILDISKIEAGKMILYPETFDVSLLITEVVNTIQP 480 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----- 732 + ++ F+N + ++AD + VKQI +N+LSNA FT G +I+++ Sbjct: 481 LIKKNGNSLQIKFSNPLGPMVADRKRVKQILINLLSNAAKFTEQG-KILLTVNRQVFNET 539 Query: 733 -------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + ++ V DTG+GMT ++ K +PF Q +S + GTGLGL + + Sbjct: 540 PQPSINSPSTWLVFSVIDTGIGMTQEQISKIFQPFVQADSSTTKKYGGTGLGLSICQRFC 599 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G + S G+ + P Sbjct: 600 EMMGGYITVESQVNVGSAFTVGLP 623 >gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4] gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 593 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 113/564 (20%), Positives = 233/564 (41%), Gaps = 31/564 (5%) Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + T + + + ++ L ++ + + +H + Sbjct: 46 EAELAAFTIESHSEEAIDEQQLALRMSERLDARVTIIAADGTVLGESATDPEDMDNHADR 105 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 P + + D Y+ A S + + ++ + T Sbjct: 106 PEIREVREGKNGTEMRYSDTIGQELLYYAVPYQVDAEQSGYVRLGLATQTIAKLNETIWT 165 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 +L I + ++ A I+ N A TF K ++ + Sbjct: 166 ILIVSFTVAFIVIGAITYRIANEMIRPIENASEVAIELAEGNFKARTF--EGKQDEVGQL 223 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + +++ + + + E +L +++ G+ IN G I N+ ++F Sbjct: 224 TRSMNVLAYNLEQITKRHEAQQE--RLETLINNMGSGLIFINTRGDISLINQKCHEIF-- 279 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK- 546 E+ K + S + + + + ++ E+I L + + K ++ Sbjct: 280 --EENTDKWLNQLYHEVFKSKELIKIVQTIFITEKRHREQIQLVTGIDTKHFDIQAAPIL 337 Query: 547 -KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++ L +HDI+E K+ + + DF+A VSHE++TP+T+I G Sbjct: 338 SEMGMVKGIVLVLHDITELKKLEQV--------------RKDFVANVSHELKTPVTSIKG 383 Query: 606 FSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 FSE + + G + +P Y+E + I + + ++ DLL++SK+E L++ L Sbjct: 384 FSETLLD---GAMADPAYMEKFLTIIHKESERLQSLIQDLLELSKLEQHYFRLNWGRAEL 440 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + V +A+ L++ A K I + A+++ + D +KQ+A+N++SNAI +TP+ G+ Sbjct: 441 TKIVQDAVELLRPKAEAKEIALSLHAASSV-EMDGDSERLKQVAINLISNAITYTPNHGE 499 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I +S T ++ ++ V D G+G+ + EL + + F ++ ++ GTGLGL + K + Sbjct: 500 INVSVT-QDHQSILFTVSDNGIGIESSELPRIFERFYRVDRARSRNSGGTGLGLAIVKHL 558 Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808 V+A+ GK + S GT I F Sbjct: 559 VEAHNGKLSVESELGHGTTFTIHF 582 >gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 634 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 114/391 (29%), Positives = 187/391 (47%), Gaps = 18/391 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E + + SD I+ R G + + A + G PV + Sbjct: 200 RTGVALLSREEERYRLLARNMSDVISRHRRNGAVQFISPAAEAMLGMPVAQLHGHGLFDR 259 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLSLRIIIKKLPFSSC--- 553 + L++ ++R ++ T E+ + + + + L Sbjct: 260 VHVADRPAYLTALSDAARGNVRSVEFRLRREPTGSERGQVDFIWVEMRCRPLDQDLGRQD 319 Query: 554 ----------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 M D+++ K + L A+ AE + K+ FLA +SHE+RTPL AI Sbjct: 320 IDRDVARETEVVAVMRDVTDRKLSEQALDQARSAAEAADAAKTRFLATMSHELRTPLNAI 379 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFS++I ++ LG + EYA I+ SG +L +VN +LD+SK+ESG + EP + Sbjct: 380 IGFSDMIAQEQALMLGAAQRKEYAQVINDSGQHLLSVVNGILDMSKMESGNFEIASEPFA 439 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 ++ +L+ L A E I + T ++P + D R+ KQI LN+++NAI FT GG Sbjct: 440 PRASLMHCCNLLALKARENGIDLITDAPQDLPVMTGDPRAFKQIVLNLVANAIKFTERGG 499 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 Q+ +S + + LR+ DTGVG+ +L++ PF Q + Q R EGTGLGL + K+ Sbjct: 500 QVSVSAAVS-GSHLTLRISDTGVGIAPDDLKRIGAPFFQAGKTYQRRHEGTGLGLSIVKS 558 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 +V ++G + S +GT + + PL TS Sbjct: 559 LVALHLGDLTVQSRLGEGTAVTVKLPLVYTS 589 Score = 38.5 bits (88), Expect = 4.5, Method: Composition-based stats. Identities = 15/173 (8%), Positives = 42/173 (24%), Gaps = 12/173 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 +G ++ IS +G ++ G L D + R N + L Sbjct: 229 RNGAVQFISPAAEAMLGMPVAQLHGHGLFDRVHVADRPAYLTALSDAARGNVRSVEFRLR 288 Query: 151 P-----IEGTNLYVPIDLAALPI------YSRNREFS-GFRGFGIVHVNRVDNDPRALGK 198 G ++ +++ P+ +R+ + ++ Sbjct: 289 REPTGSERGQVDFIWVEMRCRPLDQDLGRQDIDRDVARETEVVAVMRDVTDRKLSEQALD 348 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + K + + + + + + K+ Sbjct: 349 QARSAAEAADAAKTRFLATMSHELRTPLNAIIGFSDMIAQEQALMLGAAQRKE 401 >gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1138 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 109/657 (16%), Positives = 222/657 (33%), Gaps = 51/657 (7%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + ++ + + + R+ +H ++ Sbjct: 28 AEGGASTPDLTAILTDRLRRSPHLRGLTLLDRTGRIVATTEGTIPAGSHLTELDVFRMQA 87 Query: 261 LLTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 P + N+ + ++ + ++S L +++ + Sbjct: 88 AAQGNGLVIGDPRPGRSLIDRPAGNERSVGRWLLPMSRALRDSDGTLEAVVVATVNPDYF 147 Query: 317 EGENLTPETVDKCPIP--FFVYSHGNLFYANP-----------SFLLLTKYKSVDDIEIA 363 +G + + + +Y + + L K Sbjct: 148 QGLYRAVQGGEAAGVGDRIALYRYDGTLLTVQPQAGEEIGRSFATTPLFKTHLPQAEYGV 207 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 S ++ W+ T Sbjct: 208 FRHSGTDIGAGPDTRIVAYRTTPVWPLVLTVSVRRDTVLALWHGN---LWTATLLSGGMI 264 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 ++ + R +++E +L +I++ ++GI +G+I + N A Sbjct: 265 LLLSLFGLLLARSLATQREQGKELEATNARLSAIVDTAAEGIITTRPDGVIEAANPAAHA 324 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-------------RQTLEKITL 530 +F + +++ + L + L EI R ++ Sbjct: 325 IFRHAPGELVGRSVVELLPADRREDAARTLDEIAHGRRHLDPTARGEAIALRPAVDGEAG 384 Query: 531 GSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 G + + + L + + K Y+ + D++E K+ ++ L AK+ AE K +F Sbjct: 385 GESGKTESFPLAYSMALVKTAAGPLYAAILRDLTEEKRLEHTLRDAKEQAEDGQRIKMEF 444 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 LA +SHEIRTP+ +IG + ++ + YA I S +L ++ND+LD S Sbjct: 445 LATMSHEIRTPMNGVIGMAGLLLDTAL----QADQRGYAETIRDSAESLLVVINDILDFS 500 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707 KI++G++ L L V ++ A K + + + + +L D ++QI Sbjct: 501 KIDAGRLELEIGEFELVPLVESVAEILAPRAVAKGLDLASFVPPGLRGTLLGDAGRLRQI 560 Query: 708 ALNILSNAIHFTPSGGQIIISTTHT--------SNE--EVILRVRDTGVGMTNYELEKAM 757 LN+ NA+ FT SG + I V VRDTG+G+ + + Sbjct: 561 LLNLAGNAVKFTDSGS-VTILLNEEAPIDNDSGDGGGVRVRFEVRDTGIGIPEEDRPRLF 619 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F Q+ +S R GTGLGL + K + + G+ + S P G++ + PL + Sbjct: 620 TMFSQVDSSPARRHGGTGLGLAICKRLTELMGGRIGLDSHPGTGSVFWVSVPLKRGA 676 >gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 769 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 135/688 (19%), Positives = 261/688 (37%), Gaps = 56/688 (8%) Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 + A I+ + + +G + ++ + D A + G S V Sbjct: 96 VFADAADIFD-SGDITGAQARLAKYLPQDRLDSGAFVLLVQASGKVFAATTAGLSHVGSN 154 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 D F + S R ++ + + + ++ + Sbjct: 155 VGDFFPEVSA--IRRFGDRADVIETTIGGVPHYAEITLMGNAGGYIVAATSLDEIDRLWR 212 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS 337 + ++ Y + D E + + + + Sbjct: 213 EELALNVTLFAGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFD 272 Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 F+ + S + D G + L+ D+ + + + Sbjct: 273 FENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIGKGSSGQV 328 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ++ ++ + + M + M GI + + ++ +L Sbjct: 329 D-QIFRMRHAGGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLAD 386 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E TS+ + ++ ++ N + +G P ++ + + + Sbjct: 387 AIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTV---NAAAARPVIERR 443 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--- 573 +S + T +E+ L + + DI+ K+ + +L Sbjct: 444 ISDADGSGYSRTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESER 500 Query: 574 --------------------------------AKKIAEKESSHKSDFLARVSHEIRTPLT 601 K+ AE + KS+FLA +SHE+RTPL Sbjct: 501 RLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLN 560 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GFSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E Sbjct: 561 AILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCER 620 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + L + E++ + A EK I+I + + ++AD R++KQ+ LN+LSNA+ FT + Sbjct: 621 IDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTDN 679 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG+I + T V + + DTG+G+ L K +PF Q+ + G+GLGL ++ Sbjct: 680 GGRIALRTRRVD-GAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAIS 738 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +++ + G+ I S A GT+I + P Sbjct: 739 RSLTSLHGGRMKIRSREAVGTVISLRIP 766 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + +G M + + ++H D I + + ++ Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIGKGSSG 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I S + GI + D++ Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + + + V + + Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTVNAAAARPVIERR 443 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S+ ++ + ++ + S + L Sbjct: 444 ISDADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503 Query: 323 PETVDKC 329 D Sbjct: 504 ATIGDLS 510 >gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 797 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 98/538 (18%), Positives = 200/538 (37%), Gaps = 31/538 (5%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338 + L+ ++ ++S + + P + Sbjct: 137 APRKLSDAQKEGLEILARTVVAHISLKKKSEALIANNHRYEELLNITAVSPEIHCILDYT 196 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G + + N + + +Y + I + + + + + Sbjct: 197 GKVLFINNAITNILEYTVEEAIGLNIWNFCHREDIDRIVKIIEEGLRNKIKE-----FVI 251 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + +N + + + + ++ M+L + Sbjct: 252 DFRIVSKTGVIRWLGWSMV-------AKNGRWYAYGRDITENKKVEHEL----MKLSFVA 300 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 ++ I I + + N A K+ G+ ++D+ + + + Sbjct: 301 SKVNNAIVINDANNHVTWVNEAFEKITGFNLDDLKGRRLGDLIAGPETDMALMERARA-Q 359 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574 L Q+ L K+ + + L I + + DI++ K+ + ++ A Sbjct: 360 TKLNQSFTVDLLAYRKDGQPIWLSIYNTVVFNDLGNVEIEVEIIIDITDKKRVEREMLEA 419 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ A + S K FL+ +SHEIRTPL A+IG + ++ IE N + SG Sbjct: 420 KEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEND----PRASQIEDLNILKFSG 475 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+I+ND+LD +K+E+G + L P S+ ++ I+ + + A +K ++ + + I Sbjct: 476 ENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLYVGATKKGNILELLYDDQI 535 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTN 750 P + D + QI +N+L NAI FT G +II+S + V + DTG+G+ Sbjct: 536 PHLSGDKTRLYQILMNLLGNAIKFTDQG-KIILSVKLLEQDAVNASLYFEISDTGIGIPE 594 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + F Q + GTGLGL + K +++ + + S GT Sbjct: 595 DKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEIQVKSREGAGTTFSFTL 652 >gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella thermoacetica ATCC 39073] Length = 604 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 96/463 (20%), Positives = 180/463 (38%), Gaps = 38/463 (8%) Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 G +S L+ L + L+ + R + + ++ Sbjct: 176 PEASLSAAMGAMSRLILYAGLVAVLLATILALFAARRVTRPLKSLSLAARQMARGDFSVR 235 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 P A++ + ++ + + E +L ++ +DG+ G + Sbjct: 236 V-PVASADELGQLAGSFNFLAGELSRTVA--ALSREKEKLNRVVRDMTDGVLAFTASGRV 292 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 L N KL G P+ P +++ + + Sbjct: 293 LFANPRAEKLLGLPLSPGAELPV---------ELLDPLRAAVAGEGTTGEINW------- 336 Query: 535 EEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +E++L++R + + DI+ K+ + + +FLA V Sbjct: 337 QERVLAVRAAPLQEEDPCGEAAVAILQDITTQKKME--------------QMRREFLASV 382 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL+ I G+ E + + G EY I N + +V+DL D++K+ + Sbjct: 383 SHELRTPLSFIQGYGEALADGL--ATGEKERQEYTGIILAEANRLRRLVDDLFDLNKMAA 440 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G + L V E V+ Q E +++ +P + AD ++Q+ +N+L Sbjct: 441 GHLPLELAEVDPGELVTGVARKYQPLLAEHGLVLEVELEPYLPPVWADAGRLEQVLVNLL 500 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 NA T GG+I IS + E+ + V DTG G+ EL + F ++ S+ Sbjct: 501 DNARRHTSPGGRITISAGL-AGRELKISVADTGKGIPAGELPYIWERFYKVDKSRSRGDS 559 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 G+GLGL + K +V+A+ G+ + S P +G++ PL+ S Sbjct: 560 GSGLGLAIVKGLVEAHGGRVEVVSEPGRGSIFSFYLPLHIDSE 602 Score = 41.2 bits (95), Expect = 0.77, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 54/264 (20%), Gaps = 35/264 (13%) Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 V + S + +++ A + + Sbjct: 166 EVNGAVILFAPEASLSAAMGAMSRLILYAGLVAVLLATILALFAARRVTRPLKSLSLAAR 225 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 + + + A + V Sbjct: 226 QMARGDFSVRVPVASADELGQLAGSFNFLAGELSRTVAALSREKEKLNRVVRDMTDGVLA 285 Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 ++ G + +ANP L A PV L R + Sbjct: 286 FTASGRVLFANPRAEKLLGL--------------------PLSPGAELPVELLDPLRAAV 325 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-- 452 A I W + + P I + + ++ + Sbjct: 326 AGEGTTGEINWQER---VLAVRAAPLQEEDPCGEAAVAILQDITTQKKMEQMRREFLASV 382 Query: 453 --QLCSIL-------EATSDGIAI 467 +L + L EA +DG+A Sbjct: 383 SHELRTPLSFIQGYGEALADGLAT 406 >gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans P7] Length = 945 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 91/356 (25%), Positives = 165/356 (46%), Gaps = 10/356 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L + I ++ + N A +K FG D+ + + +T + ++ E+ Sbjct: 193 LLNNSESQIWALSNVTSYATANEAHAKFFGKTKSDLEYQDLYDIFDIDTANKLSKSNWEL 252 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574 E E +LL ++ ++ + T +DI+E + + +L A Sbjct: 253 FQKGEPAEKELEIKNFKGENRLLKIKSRPQRDDKGNIQYLICTANDITEQRLAEKELYKA 312 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE ++ KS FLA +SHEIRTP+ I GF E+++ E+ + Sbjct: 313 KEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQATNLSL----EQKEFIREAKSAS 368 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++L I+ND+LD SKIE+ K+ + +L ++ +A+SL+ A EK + + T N+ Sbjct: 369 EILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLAPKAAEKNLELYTMINPNV 428 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTN 750 P ++ D ++Q+ N++SNA+ FT G + + N + V+DTG+G+ Sbjct: 429 PEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVKVDCLKEENKIAFLNFEVKDTGIGIRK 488 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + K F Q S + GTGLGL ++ +V GK + S +G+ + Sbjct: 489 EHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKF 544 >gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4] gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4] Length = 790 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 120/553 (21%), Positives = 222/553 (40%), Gaps = 51/553 (9%) Query: 301 EYLSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358 Y + ++ F + + + + + + S + + Sbjct: 237 AYFAQAKRARETSDVFVDSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSN 296 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + + L+ D+ + + ++ ++ + + + Sbjct: 297 EPLGFADAARLMH----PDDGNLYALARTIGRDGDRHID-QVFRMRHANGHYVWLRARAQ 351 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 GI + + ++ +L +E TS+ + ++ ++ N Sbjct: 352 VIRTSSGSP-HVIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 410 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++G P ++ V + + ++ + + T +E+ Sbjct: 411 AHFQHVYGLPDSVLVP---GVERAVVDAAAARPIIQRRIADPSAKGSSRTTELQLADERW 467 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA------------------------ 574 L + + DI+ K+ + +L Sbjct: 468 LQINERRTR---DGGLVSVGTDITLLKRHQERLREQERRLMATIGDLSSSQKKLERQKAE 524 Query: 575 -----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 K+ AE + KS+FLA +SHE+RTPL AI+GFSE++ FGP+G+P+Y Sbjct: 525 LSEANEKYLAEKQRAEAANKAKSEFLANMSHELRTPLNAILGFSEILSTGMFGPIGSPKY 584 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 EYA I SG +L+++ND+LD+SKIE+G M L E V + E + L + A +K Sbjct: 585 GEYARDIHDSGKHLLNVINDILDMSKIEAGHMLLKCENVDFASLIDETLRLTTISAKDKN 644 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I I A+ + + AD R++KQI LNILSNA+ FT GG+I + H + V L V D Sbjct: 645 IAIEQRIASGL-AMTADRRALKQILLNILSNAVKFTNEGGRISVR-AHKIDGAVRLLVSD 702 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + K +PF Q+ + G+GLGL ++++++ + G I S KGT+ Sbjct: 703 TGIGIPKQAISKIGQPFEQVQSQYAKSKGGSGLGLAISRSLIMLHGGSLRIRSREGKGTV 762 Query: 804 IEIIFPLYDTSHP 816 + I P + P Sbjct: 763 VSINVPDSPSPLP 775 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 41/399 (10%), Positives = 98/399 (24%), Gaps = 47/399 (11%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNY-----AFKMIGMRLCD-----------VSDILHID 128 F +D G + S +G + D I + Sbjct: 132 FVLLLDPEGRVVASSGNGSSFVGMQIMALFPQVAVLRNFGDQTGAVETDINGFRHIAVLT 191 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 P G L+ ++ W E + L + + G R Sbjct: 192 PTGTDGALVLAAHSLKSAADYWRAE-------LALNVTLFSAISLILMGILYAYFAQAKR 244 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + + L + G + + +S L + L A Sbjct: 245 ARETSDVFVDSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSNEPLGFADA 304 Query: 249 -----HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-- 301 D L + + + + N + + ++ +S Sbjct: 305 ARLMHPDDGNLYALARTIGRDGDRHIDQVFRMRHANGHYVWLRARAQVIRTSSGSPHVIG 364 Query: 302 -YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + L+ + E + + ++ F ++ + L N F + Sbjct: 365 IAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVL 424 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + + D A +P++ R S+R +Q E L + Sbjct: 425 VPG--------VERAVVDAAAARPIIQRRIADPSAKGSSRTTELQLADERWLQINERRTR 476 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + ++ ++ + +L + + Sbjct: 477 DG-------GLVSVGTDITLLKRHQERLREQERRLMATI 508 Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 24/249 (9%), Positives = 60/249 (24%), Gaps = 11/249 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLL---KRQN 141 W+ D S + +G + +G D + ++H D N + + Sbjct: 270 LWDFDLASRKLVWSRSMFDILGLPPSNEPLG--FADAARLMHPDDGNLYALARTIGRDGD 327 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + V + A I + + GI + D Sbjct: 328 RHIDQVFRMRHANGHY-VWLRARAQVIRTSSGSP---HVIGIAMDVTEQHRLAQRYAEAD 383 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + E + + + + H+ + + V A D Sbjct: 384 QRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVLVPGVERAVVDAAAARPIIQ 443 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 ++ S+ ++ + ++ S ++ Sbjct: 444 RRIADPSAKGSSRTTELQLADERWLQINERRTRDGGLVSVGTDITLLKRHQERLREQERR 503 Query: 321 LTPETVDKC 329 L D Sbjct: 504 LMATIGDLS 512 >gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 720 Score = 337 bits (863), Expect = 7e-90, Method: Composition-based stats. Identities = 114/519 (21%), Positives = 203/519 (39%), Gaps = 38/519 (7%) Query: 324 ETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V CP+ + + N +++ + K++ + L + + Sbjct: 74 RIVFSCPVGMYCTWGPQRRVFYNDAYIPILKHRHPHALGSP------LHEVWPEVWDQVH 127 Query: 383 PVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + S I+ + + T+ N + + + Sbjct: 128 AIASKVESGGFVLESDVQFDIEVDGKPQGNYYTYGNSPLFNAEGKVSGMLCTILDTTTSV 187 Query: 442 INKRKME-----------IEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489 + E E +L SILE +A+++ E TN + LF Sbjct: 188 KRNQAAEESLARSNQEVRAERRKLRSILEKAPIAMAVLDGPEHRFSMTNDSYRDLF-LGD 246 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKL 548 D+ + + + L E+ + + S+ + + Sbjct: 247 CDVTGRRVKDVFPKTEKIGLIALLDEVYRTGKVFEAKNYEIHDRRADGVEFSVFVDVVYQ 306 Query: 549 P------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 P L ++++E + L AK AE + KS FLA +SHEIRTPL Sbjct: 307 PIYDFNDEIEGLVLAANNVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGV 366 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+GF+E+I Q L Y I R+G + I++D+LD+SKIE+GK + PV Sbjct: 367 ILGFAEIIGTQD---LDESERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPV 423 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS 721 L + + E +++ A+ K I + P I L+D+ ++Q+ +N++ NAI FT Sbjct: 424 KLKKLLQEVLTMFFDQASRKNIYLNYELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMK 483 Query: 722 GGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G + +S ++++ + DTG+GMT + E+ +PF Q + + GTGLG Sbjct: 484 GS-VKVSCRAEQVTATRKKIVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLG 542 Query: 778 LPLAKAMVDANMGKFY-IFSTPAKGTLIEIIFPLYDTSH 815 L L++ + A G + P +G E F D S Sbjct: 543 LALSRNLARALGGDVSIVRCEPRQGCTFEFSFQAEDVSE 581 Score = 44.2 bits (103), Expect = 0.084, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 4/143 (2%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWP 151 ++ + + +G L +V + D + I ++ Sbjct: 91 RRVFYNDAYIPILKHRHPHALGSPLHEVWPEVW-DQVHAIASKVESGGFVLESDVQFDIE 149 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 ++G P+++ + SG I+ +A + L + + + Sbjct: 150 VDGKPQGNYYTYGNSPLFNAEGKVSGML-CTILDTTTSVKRNQAAEESLARSNQEVRAER 208 Query: 212 KGHSSVEKEKYDIFSQQSPPPHL 234 + S+ ++ + P H Sbjct: 209 RKLRSILEKAPIAMAVLDGPEHR 231 >gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 785 Score = 337 bits (863), Expect = 8e-90, Method: Composition-based stats. Identities = 103/548 (18%), Positives = 207/548 (37%), Gaps = 64/548 (11%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 ++ + + +E + + N + + + K K+ Sbjct: 129 EQPGKLDGVLQDLTQRKLVEE---KLSVIFQYSTDAHLLLDESGITDCNEAAVKMLKCKN 185 Query: 357 VDDIE--IAGGLSTLLDAPKLSDNNAIKPVMLY--------------RSDRTCIAASARL 400 ++ S + + R D L Sbjct: 186 KSELLSIHPARFSPEFQPDGRRSSEKSIEMDRLAYENGYNRFEWVHKRMDGEEFPVEVTL 245 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 + + + + L + + + + + + L + Sbjct: 246 NPVMISSKKVLLVVWH-------------------DITHRKRAEELIRRNEAMLAESQQL 286 Query: 461 TSDGIAIINREGIIL---STNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTE 515 T G + I + ++FG + F+ + + + ++ + Sbjct: 287 THSGSWEADL---ITGQNYWSDEAFRIFGLEPGSAGPETELFSKMIHPDDMLLYKSHIRD 343 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKL 571 ++ + + + ++ + I K L S + DI E K+ + +L Sbjct: 344 AINELKPASFHLRIVL--PDGRVKFIHAIGKPLIDSGGRVTKLYGAIMDIDEQKKAEQEL 401 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AE + KS FL+ +SHEIRTP+ A+IGF+ ++ Q P +EY N + Sbjct: 402 IKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQD----PKPEQMEYLNILK 457 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +L ++ND+LD SKIE+GK+ ++ + S V ANEK I+++ + Sbjct: 458 FSAENLLVLINDILDFSKIEAGKIEFEEVDFNVLALLENIRSGVLQKANEKGIMLKLKVS 517 Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVIL--RVRDTGV 746 N++ ++ D + QI N++SNA+ FT SG ++ IS +++ V + RV DTG+ Sbjct: 518 NDVNIMVVGDPTRLGQILTNLVSNAVKFTESG-KVTISAAVSARADKHVTIDFRVEDTGI 576 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--I 804 G+ +LE F Q + + G+GLGL + K +++ ++ S G+ Sbjct: 577 GIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRLLELQKSNIHVDSEQGNGSAFYF 636 Query: 805 EIIFPLYD 812 + FP+ + Sbjct: 637 SLSFPISE 644 Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 24/162 (14%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTV-FLEQNTP 506 L ++ + GI + + +L GY +I + FT + Sbjct: 6 SAESLDMVISGINAGIWDWDFNTGKQVWSDRFFELLGYQPGEIPTGYESFTQKLVHPEDK 65 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---------- 556 S++ + E L ++ + + + R ++ + Sbjct: 66 SIVADAIREQLENNVPYLVHVRLKTKNNDYRYFECRGNVRFENGKPERMVGSVSDIHDNM 125 Query: 557 -----------TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + D+++ K + KLS + + + Sbjct: 126 MQKEQPGKLDGVLQDLTQRKLVEEKLSVIFQYSTDAHLLLDE 167 >gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase [Caldicellulosiruptor owensensis OL] Length = 575 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 89/369 (24%), Positives = 164/369 (44%), Gaps = 31/369 (8%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +L S+L++ GI + IL NR + + + Sbjct: 235 RKRLTSLLDSIDIGIIFFDVNKRILMFNRGAENIL--------ETNLKIGFSLLECVRVY 286 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEK 568 + D + E+ S + K L + L + DI+ K+ + Sbjct: 287 ELFEFLFQQDTK---ERELEISINNKLKFLKVSKKKISYEDGKEGILLILSDITFLKKLE 343 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 +SDF+A VSHE++TPLT+I GF E +K+ I++ N Sbjct: 344 --------------RVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLN 387 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I+ ++ ++NDLL +S+IE+ M + E V++ E V E+I L+++ A +K I Sbjct: 388 IIEVEVERLVRLINDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDI 447 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + +KQI +N++ NAI + G++ ++ N V+++V+DTG+G+ Sbjct: 448 KVPEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTLE-KPNGMVVIKVKDTGIGI 505 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E+E+ + F ++ + + GTGLGL + K +V+ GK ++ S G+ + Sbjct: 506 PEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTI 565 Query: 809 PLYDTSHPH 817 P+ + PH Sbjct: 566 PIKKKADPH 574 >gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas syringae pv. phaseolicola 1448A] Length = 576 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 120/529 (22%), Positives = 212/529 (40%), Gaps = 50/529 (9%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385 HG + N + Y S D ++ L+ + P+ Sbjct: 48 IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107 Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + I L I+ + AM + + I ++ + Sbjct: 108 FEAMVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166 Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +++ + S++E+ D + + + +GII N+ + L G ++++ Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553 P F P+ + + +LS E E ++S Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 D++E K+ + L E S KS+FLA +SHE+RTPL A+IGFSE +K+ Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 G + + Y I SG +L ++ND+LD+SK+E+G M L EPV L+E +S ++ Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLL 403 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 +V+ A +RI ++ + + D R KQI N+L+NA+ F+ GG + ++ S Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463 Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 + + L V DTG+G+ ++ K K F QI + + Sbjct: 464 FAHAGVIEGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 EGTGLGL + K + + + G + S G + P+ P +C Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +K+ V +T+ + LL+ Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373 Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 L + + + L + + R L D G Sbjct: 374 ILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431 Score = 44.6 bits (104), Expect = 0.069, Method: Composition-based stats. Identities = 26/270 (9%), Positives = 69/270 (25%), Gaps = 36/270 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI-DPNNHIGDLL--------- 137 D HG ++ + + +G ++ ++ D+SD + + L Sbjct: 50 TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109 Query: 138 ------KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 R + T +G+ + ++ + G+ G N Sbjct: 110 AMVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239 LD++ L + + S+ + D P + R +++ Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + D + SE + + + T + ++ Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 + + F+ ++ Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312 >gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus donghaensis MPA1U2] Length = 465 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 180/418 (43%), Gaps = 29/418 (6%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLC 455 + I+ E ++ + + + N +++ E +L Sbjct: 70 IKPIENATETAMELAKGNYVARASESNAYNSIELSRTINVLARNLQEITAIRVMEQERLK 129 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +++E + +I+++G + N+ S+ FG E +L K + + +++ Sbjct: 130 TLIENMGSALIMIDKQGAVSLVNKPFSEEFGLSPEIVLGKFYKEIQVPI---EVENFIES 186 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573 + + ++ L K K ++ + DI+E K+ + Sbjct: 187 VFMTETHSRVQIEFLSGLK-MKNFNVYGAPVIGEHERWLGIVIVFQDITELKKLE----- 240 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + DF+A VSHE+RTP+T+I GFSE + + + + + + Sbjct: 241 ---------QIRKDFVANVSHELRTPVTSIKGFSETLLDGAY--KDTETLLSFLEIMHTE 289 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 N + ++NDLLD+SK+E ++ +P +++ + A ++Q +EK I ++ Sbjct: 290 SNRLEMLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKLEIQP- 348 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 +L D + Q+ +N+L NA+ ++ + +I I N I++V D G+G+ + E+ Sbjct: 349 -VTVLGDANRLIQVMMNLLINAVTYSSNYTEITIRLFRKDN-RAIIQVEDQGIGIESSEI 406 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + + F ++ ++ GTGLGL + K +++A+ G + ST GT I PL Sbjct: 407 GRLFERFYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLPLA 464 >gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium meliloti BL225C] Length = 917 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 118/638 (18%), Positives = 224/638 (35%), Gaps = 27/638 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + R S + ++ + + + Sbjct: 23 RITDLPISARVAALTAAGLISLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAF 82 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYL 303 + L L+ S+ ++ +E + ++ E Sbjct: 83 GDLRYWLTDLSVSL--LMNSQRNADEARERLQEQLAGLAKHAPEAVEAIRTEVDAYVETA 140 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 G L + L + + + V E Sbjct: 141 LQAADSYTQDNRIVGNALLAKARTHS--GKVDADLNRLVEQVKAEAEAARNEVVVQTEKT 198 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + +L + + + ++L RL+ + + IP E ++ Sbjct: 199 ATTAAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVDIPEEGGDE 254 Query: 424 FPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + E + + + + E + + + LE SDG + + E IL N Sbjct: 255 LGAMARTLSLFRESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYC 314 Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----- 536 ++F + + + F +EQN E++ L Sbjct: 315 EIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEK 371 Query: 537 --KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +RI +K+P DI+E KQ + +L AK AE + KS FLA +SH Sbjct: 372 RFGDKWVRISKRKIPD-GGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSH 430 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AIIG+SE++ + + + + I +G +L ++ND+LD+SKIE+ K Sbjct: 431 ELRTPLNAIIGYSEMLIEEARDHE-DEELVPDLDKIASAGRHLLSLINDILDLSKIEANK 489 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 M + E S+ + + + + V F ++ + +D ++Q N+LSN Sbjct: 490 MEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSN 549 Query: 715 AIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A FT +GG++ + + ++ +V DTG+GM+ + E+ F Q S Sbjct: 550 AAKFT-NGGRVTLRVRREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNY 608 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + ++ G + S KG++ + P Sbjct: 609 GGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTMEVP 646 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 16/219 (7%), Positives = 48/219 (21%), Gaps = 3/219 (1%) Query: 90 DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D+ + + + + + + G ++ + + K W + Sbjct: 301 DSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG--KSPQEWVDERV 358 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L + R+ + + +R + Sbjct: 359 RLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESAN 418 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E K + + + + + D L S + Sbjct: 419 EAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIASAGRHLLSLIND 478 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + + + + L + + L RN Sbjct: 479 ILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARN 517 >gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sp. AT1b] Length = 575 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 93/461 (20%), Positives = 190/461 (41%), Gaps = 40/461 (8%) Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + ++ + +L I + + AR++ ++ + E Sbjct: 152 RIWLTIALALFFSFFIILFVLQHLTNQFIRPIDEATIVLRELADGNYRARVYELRNDEET 211 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 I N ++ ++ + +L S++E G+ +++ Sbjct: 212 GSLAGSINVLARNLESISLGESV-----------------QRARLESLIEYMGAGLLLVD 254 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 GI+ NR+ ++F Y I + + +++ + ++ Sbjct: 255 ERGIVTLVNRSYREMFQYDDLSIGQFYHGILPSPEVETLIEDVYLTEEVHRRQLSIRTGF 314 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T + L +L +DI+E K+ + + DF+ Sbjct: 315 NQKTYMVSAAPIFSDTGMLR---GTTLLFNDITELKRLE--------------KMRKDFV 357 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDIS 648 A VSHE++TPLT+I GFSE + + G P + + + I + + +V DLL++S Sbjct: 358 ANVSHELKTPLTSIRGFSETLLD---GAKEVPELRDQFLDIIQKEATRMQMLVEDLLELS 414 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 ++E + V L++ V E L+ A++K I + + + ADL +KQ+ Sbjct: 415 RLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTV-VLQADLNRMKQVI 473 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +N+++NAI+++P G ++ I+ ++ LRV+D G+G+ E+ + + F ++ ++ Sbjct: 474 MNLVANAINYSPEGSRVEIAVEAKADSY-KLRVKDNGIGIAEKEVSRIFERFYRVDKARS 532 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + K ++D + + S KGT I FP Sbjct: 533 RNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFP 573 >gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum gilvum SL003B-26A1] gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum gilvum SL003B-26A1] Length = 787 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 125/675 (18%), Positives = 238/675 (35%), Gaps = 69/675 (10%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-D 251 AL + L + + I + PHL + + L Sbjct: 111 RSALQRVLADALPAGATSRGRSILLTDPDGMIVASAPLQPHLEGQPITALLGPSQPLTVF 170 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-------- 303 S +L + + + Sbjct: 171 GARAGVMMVDKGSAGEALATVHHLDGRLGMVAVMQPEKEIFADWRGNVSANVTLFVGTST 230 Query: 304 -----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLL 351 + + F + + + S L Sbjct: 231 VLLVLVYAFFSQATRAEQADEIYAATRTRIDTALTHGRCGLFDWDLARGRIFWSASLYDL 290 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + DDI ++ L + + + T R+ ++ + + Sbjct: 291 LGREPKDDILGFAEIADLTHPDDIDLYRLAETL-----LETGQTTVDRMFRMRHADGSWV 345 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + + GI + + + ++L +E S+ + N + Sbjct: 346 WLRARGEVQTDPGRAEPHLIGICIDVTEQHELAEQSRTADLRLRDAIETISEAFVLWNAD 405 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITL 530 ++ N L P + + +P + E + +H T L Sbjct: 406 NELVICNSNYQSLHNLPEQAV--RPGAPYAEVMAAARNSHITTSPLHGGTPGAGANASYE 463 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK---------- 580 + + L + ++ + DI+ K+ + +L +++ Sbjct: 464 AQLDDGRWLQIS---ERRTKDGGFVSVGTDITTLKRHEERLLDSERRLMATVSDLRKSRQ 520 Query: 581 -------------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + KS+FLA +SHE+RTPL AIIGFS+++ F Sbjct: 521 TLEMQAQQLVELAEKYAQEKTNAENANRAKSEFLANISHELRTPLNAIIGFSDIMDRGMF 580 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 GP+G+ RY EY I SG +L+++ND+LD+SKIE+G+M + +P+ ++ V EA ++ Sbjct: 581 GPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGRMEMTVKPLGVEAVVEEAGRII 640 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + A EK I + + + AD R++KQ+ LN+LSN + FTP G + +S H + Sbjct: 641 RAPAQEKAIEVTCEVEPGL-AVAADRRALKQVLLNLLSNGVKFTPEKGTVRLSV-HRAGG 698 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + DTG+G+ ++++ +PF Q+ N +G+GLGL +A+++V+ G I Sbjct: 699 LARFEIADTGIGIRKADVDRLAQPFVQVENQFTKTHKGSGLGLAIARSLVELQGGTLTIA 758 Query: 796 STPAKGTLIEIIFPL 810 S P +GT + PL Sbjct: 759 SVPGQGTRVAFTLPL 773 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 27/250 (10%), Positives = 59/250 (23%), Gaps = 12/250 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIG-NYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNT 142 F W++ A G + S L +G ++G + D++ ID LL+ T Sbjct: 272 FDWDL-ARGRI-FWSASLYDLLGREPKDDILGFAEIADLTHPDDIDLYRLAETLLETGQT 329 Query: 143 WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + +G+ +V + R G I ++ + D Sbjct: 330 TVDRMFRMRHADGS--WVWLRARGEVQTDPGRAEPHLIGICI--DVTEQHELAEQSRTAD 385 Query: 202 KKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + E + ++ + + + YA + Sbjct: 386 LRLRDAIETISEAFVLWNADNELVICNSNYQSLHNLPEQAVRPGAPYAEVMAAARNSHIT 445 Query: 261 LLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + ++ S D Sbjct: 446 TSPLHGGTPGAGANASYEAQLDDGRWLQISERRTKDGGFVSVGTDITTLKRHEERLLDSE 505 Query: 319 ENLTPETVDK 328 L D Sbjct: 506 RRLMATVSDL 515 >gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110] Length = 1195 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 170/369 (46%), Gaps = 23/369 (6%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTE 515 + T+DGI + ++ + K+ GY E + ++ + + + + Sbjct: 583 VSGTNDGIWDWDLRNDMVYYSPVWMKILGYEHESLPHVLSTWSDHIHPDDLELAIQDVKN 642 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 L I + + K + T+ DI+E K+ + L Sbjct: 643 HL-QGNTTIYTNIHRIQHHNGHYIWIEAKGKCIRDQQGKPYRLVGTITDITERKKYQEAL 701 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 AK+ AE ++ KS+FLA +SHEIRTP+ AI+GF +++ + + R Y I Sbjct: 702 EKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLL----DKKVNDERSRRYLESIT 757 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 +G ++L ++ND+LD+SKIE+GK+ + ++ + L E + E + A +K++ + Sbjct: 758 SAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFAETAKQKQLELLIDID 817 Query: 692 NNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE------VILR 740 +N+P ++ D +KQI N++ NA+ FT G I I+ T N + + + Sbjct: 818 DNVPDVIIFDEVRLKQILFNLVGNALKFTEEG-YIKITLKSTLFKSDNHQKFSHCSLKIS 876 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG+G+ + E+ F Q + GTGLGL + K + + G + S K Sbjct: 877 IEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTEILEGTIDLDSQLGK 936 Query: 801 GTLIEIIFP 809 G++ + FP Sbjct: 937 GSIFILSFP 945 Score = 43.5 bits (101), Expect = 0.16, Method: Composition-based stats. Identities = 14/147 (9%), Positives = 37/147 (25%), Gaps = 8/147 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHID--PNNHIGDLLKRQN 141 W+ D + S K +G + + D ++ + L Sbjct: 590 IWDWDLRNDMVYYSPVWMKILGYEHESLPHVLSTWSDHIHPDDLELAIQDVKNHLQGNTT 649 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + G Y+ I+ I + + +R G + + ++ Sbjct: 650 IYTNIHRIQHHNGH--YIWIEAKGKCIRDQQGKP--YRLVGTITDITERKKYQEALEKAK 705 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 706 ETAEIANNAKSEFLANMSHEIRTPMNA 732 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 12/124 (9%), Positives = 38/124 (30%), Gaps = 5/124 (4%) Query: 330 PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + + N + Y +P ++ + Y + E + + D+ + + Sbjct: 587 NDGIWDWDLRNDMVYYSPVWMKILGY----EHESLPHVLSTWSDHIHPDDLELAIQDVKN 642 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + +H IQ + + + + +Q + G + + + + +E Sbjct: 643 HLQGNTTIYTNIHRIQHHNGHYIWIEAKGKCIRDQQGKPYRLVGTITDITERKKYQEALE 702 Query: 449 IEVM 452 Sbjct: 703 KAKE 706 >gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1] gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus gasseri ATCC 33323] gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4] gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1] Length = 621 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 87/421 (20%), Positives = 178/421 (42%), Gaps = 35/421 (8%) Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R ++ + S + ++ Q E + E + E +L Sbjct: 214 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 268 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L +DG+ +R G I N G +D++ KP T L + + + Sbjct: 269 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 323 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 +LS + + + +I + F S +HDI++ ++ + + Sbjct: 324 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 380 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 F++ VSHE+RTPLT++ + E + + + + + I Sbjct: 381 -----------QFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETE 427 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-------QLYANEKRILIRT 688 ++ ++NDLL +S+++ G + E V+L++ V+ ++ ++K+ I+ Sbjct: 428 RMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKR 487 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + + D + Q+ NI++NAI ++P GG I + + + VIL + D G+G+ Sbjct: 488 EFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGI 546 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K F ++ ++ + GTGLGL ++K +V+A+ G+ + S G+ I Sbjct: 547 PRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISL 606 Query: 809 P 809 P Sbjct: 607 P 607 >gi|56750207|ref|YP_170908.1| phytochrome [Synechococcus elongatus PCC 6301] gi|56685166|dbj|BAD78388.1| phytochrome [Synechococcus elongatus PCC 6301] Length = 1165 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 101/731 (13%), Positives = 228/731 (31%), Gaps = 51/731 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G L + + + ++ L + L + Sbjct: 475 VDERGKLAFANPTAQEWLAIDKSELSQQSLDQLL-PLDLTA------------------- 514 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKF 204 W G + L + R G ++H + D+ F Sbjct: 515 -WNQGGVGNQGELKLKGRILQYEARPLVGPVAERGWVLVLHDVTAQRQVDQAMRERDQFF 573 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 S E+ + + + V D + Sbjct: 574 SLSLEMFC-MVDLRGRFIQVNPAFAATLRYSTAELVGRPYLELVDLGDRSQIATTIRRLK 632 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + Q L ++ ++ + L Sbjct: 633 AGLLIHDLVIRVWDKAGELHWLQISAALGDDRVIYCVARDVTEQRAIQEQILQQNLLLRM 692 Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + V +P L + D L P K Sbjct: 693 AGQTAKLGGWSVELPSREVIWSPETFSLLGFTDED---EPDLEEALSLYPPAERALVTKA 749 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + +H L ++ + +G + D + Sbjct: 750 LEDCIQQGISFDFDVAVHNTS---GFLLDARVTGQAVRDETGAIVRISGAFQDVSDRKRA 806 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R+ + +L + LE+ +DG ++ N+ ++ G VE+ L + Sbjct: 807 QREAQRLADRLRTTLESITDGFYTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPG 866 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + S + H + ++ E + + ++ D+SE Sbjct: 867 SYESELGHIYRQAIATGEAAHFE---TYYEPFGRWFEVHAYPS----EDGLAVYFRDVSE 919 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +Q + L + E+ + +F SH+++ PL I FS+ + + + Sbjct: 920 RRQTEQNLRITLRELERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIAR--TSNLDDES 977 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y + + + ++ DLL+ S++ + + L +P+SLD+ + + + ++ ++ Sbjct: 978 QDYLRRMASAAGRMQTLIIDLLNYSRVNTRGLPL--QPLSLDQVLDDVLVDMEASLDQAS 1035 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRV 741 ++ +P I D +Q+ N+LSNA+ F + I I + T ++ L + Sbjct: 1036 AIVERQ---PLPTIQGDAGQFRQVFQNLLSNALKFQSADNQPLIQIYSELTEAGQLRLCI 1092 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G+G L++ PF ++ + + GTG+GL + K +++ + S P +G Sbjct: 1093 ADNGIGFDEKYLDRIFNPFQRLHS--RDAYAGTGIGLAIVKKIIERHGATITAKSIPGQG 1150 Query: 802 TLIEIIFPLYD 812 ++ I FP+ + Sbjct: 1151 SVFFITFPVTE 1161 Score = 83.5 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 7/216 (3%) Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + L R+C + H Q ++ F +Q + + + Sbjct: 75 DRDTALIHGLRSCWSFPLIAHNGQVQGTLAVYQPFPQTPSEDQLQQCLTVAQLAAIAFAR 134 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +++++++ + S+ D + + +GI S N A ++ + I+ K F+ Sbjct: 135 SLDRQQLQDSEQRFRSLFTFNPDAVYSFDLQGIYQSMNSAGFEILDRQADQIIGKHFSDV 194 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557 + + + + + + + +L L + + ++ Sbjct: 195 VISEDLEKCQQHFDQACKGEAQ---HYEIRINGRNGQLFYLDVSKFPIVVNNKIVGVFGI 251 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 DI++ KQ L A + K++ L + Sbjct: 252 AKDITQRKQITADLQQALMQSNKQTEQLRR-LGNAA 286 Score = 76.2 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 52/545 (9%), Positives = 129/545 (23%), Gaps = 98/545 (17%) Query: 48 SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107 F + + F F+P ++ D G + ++ + + Sbjct: 126 QLAAIAFARSLDRQQLQDSEQRFRSLFTFNPDA-----VYSFDLQGIYQSMNSAGFEILD 180 Query: 108 NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGT-NLYVPIDLAA 165 A ++IG DV ++ H K + I G +D++ Sbjct: 181 RQADQIIGKHFSDVVISEDLEKCQQHFDQACKGEAQH----YEIRINGRNGQLFYLDVSK 236 Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 PI N + G FGI + + L + ++ + + Sbjct: 237 FPIV-VNNKIVGV--FGIAKDIT---QRKQITADLQQALMQSNKQTEQLRRLGNAAIATA 290 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 Q ++ L ++ S + + Sbjct: 291 ELQDH-------QELVKYLVEQVRLTIRAHQAVISLTRCDDWSQSINAISLSDKYAAWKN 343 Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345 T + E + DK P Sbjct: 344 YDELSTGEGIYTLICETNQPLVLTQEELEKHPRWRGFGDQADKHP--------------- 388 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 L + + + L + Sbjct: 389 ------------------PMRGWLAVPLFDPNGRNLGVLQLSDKEEGEFD---------- 420 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + ++A F A + +++++ ++ +I + ++G+ Sbjct: 421 DDDLAIAQQFAQMTVA--------VLENNRLLNEVLTAEQQLKEQLSFNSTITDCMAEGL 472 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 ++ G + N + ++ ++ L + LT + Sbjct: 473 LAVDERGKLAFANPTAQEWLAIDKSELSQQSLDQLLPLD--------LTAWNQGGVGNQG 524 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 E G + + L + + L +HD++ +Q ++ + Sbjct: 525 ELKLKGRILQYEARPLVGPV----AERGWVLVLHDVTAQRQV-----------DQAMRER 569 Query: 586 SDFLA 590 F + Sbjct: 570 DQFFS 574 Score = 41.6 bits (96), Expect = 0.63, Method: Composition-based stats. Identities = 18/246 (7%), Positives = 58/246 (23%), Gaps = 17/246 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG 145 + +D + +++E + +G + +G + + HI + + Sbjct: 829 YTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGEAAHF 888 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGK-RLDKK 203 +T P ++ A P G + + L + Sbjct: 889 ETYYEPFG-----RWFEVHAYPSED---------GLAVYFRDVSERRQTEQNLRITLREL 934 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E+++ + + + + + E + + Sbjct: 935 ERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIARTSNLDDESQDYLRRMASAAGRMQTL 994 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + L + Q + + + S + S Sbjct: 995 IIDLLNYSRVNTRGLPLQPLSLDQVLDDVLVDMEASLDQASAIVERQPLPTIQGDAGQFR 1054 Query: 324 ETVDKC 329 + Sbjct: 1055 QVFQNL 1060 >gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510] Length = 1284 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 113/630 (17%), Positives = 221/630 (35%), Gaps = 21/630 (3%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 A + + ++ + + + +++L + D Sbjct: 186 AESRAAEGPWAMELRSGLPDAEAADRNREALERWRRDLTAAATTLLAALRAEDDGQLDRF 245 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + L + +L L ++ + + ++ Sbjct: 246 QADTRGALDNAAEALSLLPADRAARLEPLQRELAEQAFGRSPLFALRTTELSLQRAIKRS 305 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + ++ + V F + L + LS L A Sbjct: 306 AARNQAVSDQLVGIVSDYFLAVEQD--VAHRSAEFELVIRDGERAVIAMALLSILGAAAI 363 Query: 375 LSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + L R A A I + A P ++ E Sbjct: 364 FAYIHRNVVARLRRLRSAMRAVETAEPAAIPDLDLPAAA----PAGNRDEIGEMARALAY 419 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 R + + +L +ILE + G++I +G I N ++L G P ED + Sbjct: 420 F--VTAIRAREGALADSERRLRTILEQSPVGVSIGRADGTIAFANARAAELAGQPQEDFV 477 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFS 551 + L + + S + E + + +++ Sbjct: 478 GSRHALALPGTSGDPAGDEGRDADSGGVL-VREAELAVDRPDGSRVWALQTLQRTSFEGE 536 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +DI+ K + L AK+ AE + K++FLA +SHEIRTP+ ++G E++ Sbjct: 537 PAVLAWSYDITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMA 596 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + + SG +L I++D+LD+SKIE+GK+ L +S + V Sbjct: 597 LTPL----DEEQRTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGV 652 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IIST 729 L+ A++K + + ++P + D ++QI N+ NAI FT G + + Sbjct: 653 ADLLAPQAHQKGLALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQA 712 Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 T++ + + V D+G+G+ + +PF Q +S R GTGLGL + +V+ Sbjct: 713 AATADPTLIRLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVE 772 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+ + S P +G++ L P Sbjct: 773 RMGGRIGVESVPGRGSIFRFTVELARPPEP 802 >gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 641 Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats. Identities = 111/426 (26%), Positives = 199/426 (46%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G + + N ++ GY ++I+ K F+VF + Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPEM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I +S DIS+ + + L Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + + ++AD + + Q+ LN+LSNAI + GQ+ I + V + V DTG G+ Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TPA+G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623 Query: 811 YDTSHP 816 + P Sbjct: 624 VLVNAP 629 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 68/258 (26%), Gaps = 18/258 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWY 144 + +D +GY+ + + G ++IG + + N + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPEMALREATVNGRYT 342 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPRA 195 ++ +G+ + + + A Y N E GF R + + + Sbjct: 343 EESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAER 400 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + + S + + + + SP + ++ + + Sbjct: 401 ASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--INE 458 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + SL + + L + + + E + P Sbjct: 459 VLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGVV 514 Query: 316 DEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 515 ADRQRLIQVLLNLLSNAI 532 >gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC 49175] Length = 618 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 86/376 (22%), Positives = 166/376 (44%), Gaps = 31/376 (8%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L S+L SDG+ +R G I+ N A + E I+ P Sbjct: 254 KEAQEGTEAERQRLDSVLRHMSDGVIATDRRGRIVIINAAALDVLNLRNERIIGTPLLEV 313 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558 L + L IT+ EE ++ I + + S + Sbjct: 314 LRLDHSVSFRDLLESQEER-------MITIEEDGEETIVQCEISVIQRESGFISGLVCVL 366 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ + +F++ VSHE+RTPLT+I ++E + + + Sbjct: 367 TDVTEQEKI--------------DRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--E 410 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--- 675 E+ N I+ + ++ ++ DLL++S+++ ++ L E V+++E V ++ Sbjct: 411 NKEIAPEFLNVIETETDRMMRMITDLLNLSRMDQNRLELDKEFVNMNELVKHIVNRFDMV 470 Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 EK I T + D + Q+ NI++NAI ++P GG+II+ + Sbjct: 471 LQSDQYREKNYRILTDITQRNLWVEIDQDKMTQVLDNIINNAIKYSPDGGRIIVRL-MET 529 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + ++I+ V D G+G+ ++ F ++ ++ G+GLGL ++K +V + GK + Sbjct: 530 HTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQLHGGKIW 589 Query: 794 IFSTPAKGTLIEIIFP 809 + S KG+ I P Sbjct: 590 VNSIENKGSTFFISLP 605 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 19/301 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + I+ + ++IG L +V L +D + DLL+ Q + Sbjct: 281 TDRRGRIVIINAAALDVLNLRNERIIGTPLLEV---LRLDHSVSFRDLLESQE---ERMI 334 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G V +++ I + SG ++ R + F Sbjct: 335 TIEEDGEETIVQCEISV--IQRESGFISGL--VCVLTDVTEQ----EKIDRERRNFVSNV 386 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + Y + + + ++ E + + T+ L +++ Sbjct: 387 SHELRTPLTSIKSYTEALVDGAWENKEIAPEFLNVIETETDRMMRMITDLLNLSRMDQNR 446 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPETVD 327 L ++F +N F + + + + + + + ++ + +D Sbjct: 447 LELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQRNLWVEIDQDKMTQVLD 506 Query: 328 KCPIPFFVY--SHGN-LFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKP 383 Y G + + L S + + + L D D + Sbjct: 507 NIINNAIKYSPDGGRIIVRLMETHTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDKARSRA 566 Query: 384 V 384 + Sbjct: 567 M 567 >gi|300088232|ref|YP_003758754.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527965|gb|ADJ26433.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1149 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 103/748 (13%), Positives = 235/748 (31%), Gaps = 55/748 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLK-------RQNT 142 G + ++ + G ++ + + ++ + Sbjct: 297 GDGQVTYMNSRFEEIYGWPKEEITDIATFFEKVYPDAGYREAIVSRIMADIESSDPARMH 356 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W G + + A +PI + V R Sbjct: 357 WEDIEITRKDGGKRV---VAAANIPIPDQG------VMVSTVRDETEAVSARRELNHTLN 407 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ E + +V + + + Y D K Sbjct: 408 LMRYIIEHDQAGIAVHDRNLNYIYVSQRYLDEYNLGPRNIIGRHHYDVFPDLPQKWRDVH 467 Query: 261 LLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYF 315 + E ++++F + + + + + Sbjct: 468 QRALAGEICRADRDEFVREDGTVEWTRWECRPWFEKDGSVGGIIVYTEVITEQINRERAL 527 Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E + + + + Y Y + Y+ + ++ + Sbjct: 528 AESKEKYRQLAENTESISWEYDIEQDRWTYLASQVGRILGYRPEEFTDLQFWADHI---- 583 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++ P + R S ++ + ++ + E+A P + GI Sbjct: 584 -HPEDRDWAPKYCLTAARAGRDHSLEYRFLKKDGKSVWLRNIVSVEQAGCQPVKLR--GI 640 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + + + ++ +D +A+++ I N+A +++ G ++L Sbjct: 641 MIDITERKQAEEEALRSAAEWLATFDSITDMVALVDTGHRITRVNQAFARVLGRKPGELL 700 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K + + L+ +T E K + + Sbjct: 701 GKRCYEVIHGLKGPHPDCPYARALTTRQVETSEY---FDEKLGLWVEATASPIMDVDGNM 757 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609 + D+S K+ + ++ AE S + A ++HEI PLT +IGFSE+ Sbjct: 758 VGSVHIIKDVSGRKRAEENERLLREKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSEL 817 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + P E + I+ V DIV +L ++ + V++ + + Sbjct: 818 LMTRPDVP---DDMKEDLHIINEGSQRVKDIVRRMLTFAR----QSKPVKSAVNIIDVLE 870 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQII 726 I + + I I +A +I ++AD ++Q+ LNI+ NA + G ++ Sbjct: 871 NTIEMRRYVLETSNISIVRDYARDITEVVADAGQLQQVFLNIIVNAEYAMKKAHDKGVLV 930 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + T + + + + D G GM++ K +PF + GEGTGLGL L+ ++ Sbjct: 931 VKTEKSD-GHIRVLITDDGPGMSDEVKSKLFQPFFTTKDP----GEGTGLGLALSMGIIK 985 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + G + + KGT + P+ Sbjct: 986 EHGGSISVKTVVGKGTTFIVELPMTPVE 1013 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 47/519 (9%), Positives = 139/519 (26%), Gaps = 36/519 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA G + E+++ ++G ++IG + + + K + + Sbjct: 33 LDAGGNIIEVNQAWLDSLGYTRDEVIGHWFGEFLNPESAEKFRLTFPRFKEKGIVGTEFC 92 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ L V + + Y + F + ++ ++ +K+ L Sbjct: 93 FKRKDGS-LRVEV-VDGRIAYDIDGNFQ--QTHCVLQDVTEARQAETAMQQSRQKYQALF 148 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES- 267 E + V + + + + + + + Sbjct: 149 ESSGDAAFVHQPTPEGLPGVFLEVNQTACELLGYTKDEFLKLGPRDIVVWEKFGVTPPDI 208 Query: 268 --------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + F + ++ + + L+ + +E Sbjct: 209 MKILEAVKKVTRESAFRHKDGHEIPVEVVIHRF--ELQGKPAVLTLARDITKRKKAEEEL 266 Query: 320 NL-----------TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 L +D+ PI + + G + Y N F + + + +IA Sbjct: 267 KLQADELKNRNLFIQTIIDQLPIGLAINNTGDGQVTYMNSRFEEIYGWPKEEITDIATFF 326 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + + + +M I + +Q Sbjct: 327 EKVYPDAGYREAIVSR-IMADIESSDPARMHWEDIEITRKDGGKRVVAAANIPIPDQGV- 384 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 ++ + +R++ + + I+E GIA+ +R + ++ + Sbjct: 385 ---MVSTVRDETEAVSARRELNHTLNLMRYIIEHDQAGIAVHDRNLNYIYVSQRYLDEYN 441 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +I+ + + P L+ ++ + + + Sbjct: 442 LGPRNIIGRHHYDVF-PDLPQKWRDVHQRALAGEICRADRDEFVREDGTVEWTRWECRPW 500 Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + I+E + L+ +K+ + + Sbjct: 501 FEKDGSVGGIIVYTEVITEQINRERALAESKEKYRQLAE 539 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 89/285 (31%), Gaps = 18/285 (6%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 R A F + E + + P + + + GN+ N ++L Y + I Sbjct: 3 RKSEEAEARFQQLEERYKQLFQQHPSGYHSLDAGGNIIEVNQAWLDSLGYTRDEVIGHWF 62 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G P+ ++ + + + + Sbjct: 63 GE---FLNPESAEKFRLTFPRFKEK-----GIVGTEFCFKRKDGSLRVEVVDGRIAYDID 114 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNR 479 + + + + R + M+ + ++ E++ D + G+ L N+ Sbjct: 115 GNFQQTHCVLQDVTEARQAETAMQQSRQKYQALFESSGDAAFVHQPTPEGLPGVFLEVNQ 174 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +L GY ++ L+ + V + +IL + + + + K+ + Sbjct: 175 TACELLGYTKDEFLKLGPRDIVVWEKFGVTPPDIMKILE--AVKKVTRESAFRHKDGHEI 232 Query: 540 SLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + ++I + L DI++ K+ + +L + + Sbjct: 233 PVEVVIHRFELQGKPAVLTLARDITKRKKAEEELKLQADELKNRN 277 Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 51/155 (32%), Gaps = 11/155 (7%) Query: 440 TRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + + + + + + G ++ G I+ N+A GY ++++ F Sbjct: 3 RKSEEAEARFQQLEERYKQLFQQHPSGYHSLDAGGNIIEVNQAWLDSLGYTRDEVIGHWF 62 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-----S 552 FL + + T K+ L + ++ ++ + Sbjct: 63 GEFLNPESAEKFRLTFPRFKEKGIVGT---EFCFKRKDGS-LRVEVVDGRIAYDIDGNFQ 118 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + D++E +Q + + +++ + D Sbjct: 119 QTHCVLQDVTEARQAETAMQQSRQKYQALFESSGD 153 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 47/164 (28%), Gaps = 13/164 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 +D + +++ + +G +++G R +V L P+ L + + Sbjct: 675 VDTGHRITRVNQAFARVLGRKPGELLGKRCYEVIHGLKGPHPDCPYARALTTRQVETSEY 734 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L + ++ A PI + G I+ ++ Sbjct: 735 F-----DEKLGLWVEATASPIMDVDGNMVG--SVHIIKDVSGRKRAEE----NERLLREK 783 Query: 208 HEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 E+ ++V + +P + +++ Sbjct: 784 AEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELLMTRPDVPDD 827 >gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] Length = 672 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 173/382 (45%), Gaps = 16/382 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R++ +L L+ SD I I++ EG +L NR + YP +D+ + + Sbjct: 149 RQLRSSEQRLQDFLDNASDLIEIVSPEGRLLYVNRTWRETLAYPADDLEKMTCFDVVAPA 208 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 ++ L + + L + +++ + DI Sbjct: 209 DRPLLAEALERVQQSQRSERL--EVAFLAMGGREIAVEGSLNCQFDKGVPQAIRCIFRDI 266 Query: 562 SEWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 +E +Q + ++ AE+ S K +FLA VSHE+RTPL +I+G++++++ +R Sbjct: 267 TERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARR- 325 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + I+R+ + ++ DLLDIS++ +G+M L +P+ L ++ A+ V Sbjct: 326 --IDEKAATGALESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAV 383 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 Q A K+I +R + +L D+ + QIA N+L+NA+ FTP GG + + Sbjct: 384 QPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLA-QGEI 442 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 L VRD G+G++ L++ + F Q ++ G GLGL + + +V+ + G Sbjct: 443 HAQLVVRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTAAAE 502 Query: 796 ST-PAKGTLIEIIFPLYDTSHP 816 S +G + PL P Sbjct: 503 SAGKGQGATFTVRLPLLADGTP 524 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 46/473 (9%), Positives = 114/473 (24%), Gaps = 35/473 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----QNTWY 144 + G L ++ +T+ A + M DV + + L+R Q + Sbjct: 172 VSPEGRLLYVNRTWRETLAYPADDLEKMTCFDVVAPAD---RPLLAEALERVQQSQRSER 228 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + G + V L + I + R++ Sbjct: 229 LEVAFLAMGGREIAVEGSLNCQFDKGVPQAIR-----CIFRDITERRQAEQV--RVEILR 281 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + +S K+++ L + L + + + Sbjct: 282 EQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARRIDEKAATGALESIERN 341 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 ED I+ + + S + + + Sbjct: 342 ARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAVQPAAAVKQIQLRCRIDAA 401 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 ++ AN D+ + L+ + Sbjct: 402 VGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQGEIHAQLVVRDNGIGISPAFLD 461 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 ++ R A + + + L ++ + ++ + + + Sbjct: 462 QIFERFRQ-----ADSTSTRVHGGLGLGLSIVRHLVELHGGTAAAESAGKGQGATFTV-- 514 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +L + + T I EG ++ N L + V E + Sbjct: 515 --------RLPLLADGTP-----IQDEGKLVQANGRTEALTELVQWLAGLRVLVVDDEVD 561 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + L E + + L + +K + + +P Y+L Sbjct: 562 AREFVATALGEYGVQVVTVGSVREALSALAAQKT-DVLVSDIGMPGEDGYALI 613 >gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3 str. Loch Maree] gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree] Length = 569 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 174/392 (44%), Gaps = 33/392 (8%) Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 ++ + ++ + ++ + +L +IL++ G+ I++E ++ N Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +KLFG DI+ + + L ++L E L K + Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 II K + + DI++ K+ + + + F+A VSHE++TPL Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 T+I GFSE +K + + + E + I+ + + ++ND+L +S IE K L Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + L+E + + LV+ A +K I I +P ++ + Q+ +N++ NAI +T Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + I T ++ V DTGVG++ L + + F ++ ++ GTGLGL Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLYRIFERFYRVDKARSRAEGGTGLGLA 535 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + K +V + GK + S P +GT + PL Sbjct: 536 IVKHIVLSINGKIEVKSEPKRGTKFIVKIPLS 567 >gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568] gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568] Length = 539 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 96/401 (23%), Positives = 181/401 (45%), Gaps = 14/401 (3%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G+ + + R + + + E T D I + +G + A+ +L G+ Sbjct: 2 IALFGVLQDVTERERLLRAAQTNERRYRLLAENTGDVITRVKMDGSSKYISPAIQQLLGW 61 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E++ + T ++ ++ + + + LE K + + + K Sbjct: 62 TYEEMSGQS-TDYVHPEDRHLVLGAIGKAVKTGEPTRLEH--RAVHKNGETVWVECTFKA 118 Query: 548 LPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 L + D+++ K + ++ AK+ AE KS+FLA +SHE+RTPLT++ Sbjct: 119 LKDEHGQVDDVVVVIRDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSV 178 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 IGFS +++ P P Y I + +L ++ND+LD SK+E+ + + EP Sbjct: 179 IGFSGLLQGSEHLP---PEERIYVERIATASEALLGVINDILDYSKLEADAIEMDPEPFD 235 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722 V A ++++ + K +++R A + P R+ D ++Q+ LN LSNA+ FT G Sbjct: 236 TRALVDGAAAIIESQCSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKFTARG 295 Query: 723 G-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + + + +R V DTG+G+ ++ + F Q S GTGLGL Sbjct: 296 EVTLTLDGRFDESGLWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTGLGLA 355 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 +++ +V+ G+ + STP +G+ PL +D + Sbjct: 356 ISRRLVELMGGEIGVDSTPGQGSTFWFEAPLAVAEAENDAV 396 Score = 44.6 bits (104), Expect = 0.067, Method: Composition-based stats. Identities = 30/369 (8%), Positives = 80/369 (21%), Gaps = 15/369 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 + G K IS + + +G +M G V IG +K + Sbjct: 41 RVKMDGSSKYISPAIQQLLGWTYEEMSGQSTDYVHPEDRHLVLGAIGKAVKTGEPTRLEH 100 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G V ++ + + + ++ A + Sbjct: 101 RAVHKNGET--VWVECTFKALKDEHGQVDDVV--VVIRDMTQRKTLEAEVLEAKETAEAA 156 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K + + ++ E + + + + L + Sbjct: 157 VQAKSEFLANMSHELRTPLTSVIGFSGLLQGSEHLPPEERIYVERIATASEALLGVINDI 216 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--------YLSHRNHPSLSAYFDEGE 319 + + I ++ + + + D+G Sbjct: 217 LDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQCSLKGLILRVVVAADTPARLTGDKGR 276 Query: 320 NLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377 ++ F + F ++ + G G+ + Sbjct: 277 LR-QVMLNFLSNAVKFTARGEVTLTLDGRFDESGLWRMRAAVSDTGIGIPPEKISELFHR 335 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 T + + ++ + F + E + Sbjct: 336 FTQADASTTRVYGGTGLGLAISRRLVELMGGEIGVDSTPGQGSTFWFEAPLAVAEAENDA 395 Query: 438 VDTRINKRK 446 V+TR + Sbjct: 396 VETRQGQTA 404 >gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03] Length = 616 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 87/421 (20%), Positives = 178/421 (42%), Gaps = 35/421 (8%) Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R ++ + S + ++ Q E + E + E +L Sbjct: 209 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 263 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L +DG+ +R G I N G +D++ KP T L + + + Sbjct: 264 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 +LS + + + +I + F S +HDI++ ++ + + Sbjct: 319 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 375 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 F++ VSHE+RTPLT++ + E + + + + + I Sbjct: 376 -----------QFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETE 422 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-------QLYANEKRILIRT 688 ++ ++NDLL +S+++ G + E V+L++ V+ ++ ++K+ I+ Sbjct: 423 RMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKR 482 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + + D + Q+ NI++NAI ++P GG I + + + VIL + D G+G+ Sbjct: 483 EFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGI 541 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K F ++ ++ + GTGLGL ++K +V+A+ G+ + S G+ I Sbjct: 542 PRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISL 601 Query: 809 P 809 P Sbjct: 602 P 602 >gi|283850395|ref|ZP_06367684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283574421|gb|EFC22392.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 782 Score = 336 bits (862), Expect = 9e-90, Method: Composition-based stats. Identities = 110/632 (17%), Positives = 219/632 (34%), Gaps = 60/632 (9%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++ A+ + E ++ +E F I ++ L Sbjct: 145 DETMDTEAIVAYGRSIGADETAFRRALDQVPRMSRERFAKICQALDRFARHISALA--LG 202 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356 + R + + +D P P V G + + N + LT + Sbjct: 203 NHQQAQRIRELRQTRDRLGIRDRNLADIIDFLPDPTLVLDEDGTVIFWNRALEKLTGVAA 262 Query: 357 VDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 VD + + G + LL + P A A + + Sbjct: 263 VDMLGKSDFAYGTAFYGSPTPLLVDYARGAVSRPDPRYAVTEIGA-DAIIAEVTLLSLPG 321 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + + + I+E +G+ + Sbjct: 322 GDRQ-VWGKAVALRDGTGRIIGGIETIRDVTERHQADTALRESEEKFRRIVETAHEGVLV 380 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++ + NR ++ + GY +D+L + F F+ + + + E Sbjct: 381 LDGDFKATFANRRMADMLGYAPDDMLGRHFEDFVADDHLPLAREREARLR-QGESGVFEH 439 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE------ 579 + + DI++ K+ + +L++ + E Sbjct: 440 RLKTREGGGLWALVSASPLYDVSGASLGALGMFTDITDRKRIEEELANHRHRLEAEVEER 499 Query: 580 -------------------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFGP 617 + KS FL+ VSHE+RTPLT+I+GF+++I ++F P Sbjct: 500 TRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFTEQFLP 559 Query: 618 LGN---------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 L + R + + + + ++ND+LD+S+IESG M+ ++ + + Sbjct: 560 LASGQAALEARGRRIADNLSVVFHEAERLTRLINDVLDLSRIESGSMHWRDRRIAPLDVL 619 Query: 669 SEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 A + L A I+ +P + D + Q+ N+L NA+ FT +G ++ + Sbjct: 620 RTAARSIAGLLAARPEIVFVFDATEQVPDLFMDPDQLIQVVSNLLQNAVKFTRTG-EVRM 678 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGEGTGLGLPLAKAMV 785 + T E V + V D+G+G+ ELE F Q+ +GTGLGL + +V Sbjct: 679 TVR-TDGEAVQIVVADSGIGIPESELESIFGKFHQVGRGDTLSDAAKGTGLGLAICGQIV 737 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816 G+ + S +G+ + P L P Sbjct: 738 RHYGGRIWATSRLGQGSAFHVRLPCLAQEEGP 769 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 31/264 (11%), Positives = 70/264 (26%), Gaps = 16/264 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + + +G M+G D H+ L++ + + Sbjct: 381 LDGDFKATFANRRMADMLGYAPDDMLGRHFEDFVADDHLPLAREREARLRQGESGVFEHR 440 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVN------------RVDNDPRA 195 L EG L+ + +A P+Y + G G F + R++ + Sbjct: 441 LKTREGGGLWALV--SASPLYDVSGASLGALGMFTDITDRKRIEEELANHRHRLEAEVEE 498 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + L + L E S +++ K S S + + + + Sbjct: 499 RTRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFTEQFL 558 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-Y 314 E ++ + + + + S+ + R+ Sbjct: 559 PLASGQAALEARGRRIADNLSVVFHEAERLTRLINDVLDLSRIESGSMHWRDRRIAPLDV 618 Query: 315 FDEGENLTPETVDKCPIPFFVYSH 338 + P FV+ Sbjct: 619 LRTAARSIAGLLAARPEIVFVFDA 642 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 50/415 (12%), Positives = 96/415 (23%), Gaps = 46/415 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR---------------LCDVSDILHIDPNNHI 133 +D G + + L K G A M+G L D + P+ Sbjct: 241 LDEDGTVIFWNRALEKLTGVAAVDMLGKSDFAYGTAFYGSPTPLLVDYARGAVSRPDPRY 300 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + + TL + G + V A+ + G G + + Sbjct: 301 AVTEIGADAIIAEVTLLSLPGGDRQVW--GKAVALRDGTGRIIG--GIETIRDVTERHQA 356 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS--LTEYYAH 249 + ++KF + E V + + + ++ A Sbjct: 357 DTALRESEEKFRRIVETAHEGVLVLDGDFKATFANRRMADMLGYAPDDMLGRHFEDFVAD 416 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 L E+ L ES + + T L + S S L Sbjct: 417 DHLPLAREREARLRQGESGV-FEHRLKTREGGGLWALVSASPLYDVSGASLGALGMFTDI 475 Query: 310 SLSAYFDEGENLTPETVD-------------KCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 + +E ++ + L +FL ++ Sbjct: 476 TDRKRIEEELANHRHRLEAEVEERTRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHEL 535 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + G + L+ A AR I N Sbjct: 536 RTPLTSILGFAKLIGRDFTEQ--------FLPLASGQAALEARGRRIADNLSVVFHEAER 587 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINR 470 N + D RI + + +L A + + + + Sbjct: 588 LTRLINDVLDLSRIESGSMHWRDRRIAPLDVLRTAARSIAGLLAARPEIVFVFDA 642 >gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 610 Score = 336 bits (862), Expect = 1e-89, Method: Composition-based stats. Identities = 102/611 (16%), Positives = 218/611 (35%), Gaps = 65/611 (10%) Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE---E 266 +K + + + + ++ P + + L+ + + + E L +S Sbjct: 49 LKDQANLLSEMAAPTLAGKTVNPDSQQPDSAEGLSYVVRNLFSISEAEIQVLDSSGKVLA 108 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 +S + + + ++++N +E + + + EG + Sbjct: 109 TSDASHQSYIGKKNTSLAVTRALQSIRDNEEEIIDEDNVKKKIIAQPVTYEGGRVVGAVY 168 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + + + + ++ + + G L LL + + Sbjct: 169 IVASMNDLYDTMDRVN-------RIFVSGTLIALGLTGVLGILLAHTITNPIKVLTRSAA 221 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ F K E + + Sbjct: 222 AVAEGR----------------------FDQQVKVLGDDEIGRLSEAFNDMTKRLREALS 259 Query: 447 M-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E E +L S+L SDG+ + G+++ +NR +L + + L Sbjct: 260 VNEEEREKLASVLANMSDGVVASDESGMVIVSNRRALELLDVNACE--GCELAMLLGMEG 317 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563 + E+L + L K + E LL + + D++E Sbjct: 318 DEAV-----ELLQSGGSRLLRK---NNDDGEWLLRVTFTPVHRRDKGTTGTIAVLEDVTE 369 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + + +F+A VSHE+RTPLT I ++E + + + R Sbjct: 370 QEKLE--------------QSRREFVANVSHELRTPLTTIRSYAEALDDGAL----DERQ 411 Query: 624 I--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + I ++ +V DLL +S+ +S ++ L S+ E + EA ++ Sbjct: 412 LADRFVSVIRNETERMIRLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQ 471 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I + + + D + Q+ N++SNAI +T GG I++S + + V Sbjct: 472 KGIRTEVYIDDAVGTVWLDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISV 531 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD+G+G+ +L + F ++ ++ GTGLGL +A+ +V A+ G + S +G Sbjct: 532 RDSGIGIPKKDLGRIFDRFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEG 591 Query: 802 TLIEIIFPLYD 812 T + P D Sbjct: 592 TTVTFTLPAPD 602 >gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 620 Score = 336 bits (862), Expect = 1e-89, Method: Composition-based stats. Identities = 93/403 (23%), Positives = 188/403 (46%), Gaps = 29/403 (7%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + + + +++ + L +I++ +DG+ +++++G+I N A S++FG Sbjct: 232 EVFDRYEFALKDAVVELQDTLAYLTTIIDNMADGLIVVDKDGVINHINPAASEMFGKAEF 291 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +++ K + ++ V TE + + + + + + + Sbjct: 292 EMIGKNVKILGKELDKLVKKSLNTEEIVSNEINLVNERVGKAVAKSIKKEYFSEESEAKG 351 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + + DI++ K+ K++F+ VSHE+RTPLT+I+GF E+I Sbjct: 352 ILGSVILIRDITQEKEV--------------DRLKTEFITVVSHELRTPLTSILGFIEII 397 Query: 611 -----------KNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 + L + + I G + ++ND+LDISK+ESGK Sbjct: 398 NKKFTENILPHLDMNNFRLSKAVNKINKNFKIILSEGERITSLINDVLDISKLESGKAIW 457 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 +F+ +S+ +++A + +K I ++P I AD + Q+ +N+LSNA+ Sbjct: 458 NFKEISIQGVITDAYKALSSLFEQKGIPCYIEIQPSLPFINADRERLIQVVINLLSNALK 517 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 FT G + T ++ E+++ V D+G+G+ E E+ + F Q+ + + + +GTGLG Sbjct: 518 FTEKG-YVKCKTALNAD-EIVVSVEDSGIGIPEEEKERIFEKFKQVGDLIRGKPKGTGLG 575 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 L ++K +V+A+ GK ++ S KG+ PL ++ I Sbjct: 576 LAISKQIVEAHGGKIWVESELGKGSTFYFTIPLKRKEEFNENI 618 >gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 922 Score = 336 bits (862), Expect = 1e-89, Method: Composition-based stats. Identities = 110/705 (15%), Positives = 231/705 (32%), Gaps = 39/705 (5%) Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 L + + P + +P+ S+ R + + Sbjct: 60 RARLIGSGMYTHRPREHPHAASENRLPVIEHEERHRSQIRALTEASH-ALASACSAPAIQ 118 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--YAHKD 251 + + + + E+ P + + + D Sbjct: 119 EIVLSAAARLSGSGRAVLILNDEDERPVVRAALGLDPALLAELSGRPLPSADDGIARALD 178 Query: 252 DVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRN 307 PL+ S S E + + + + Sbjct: 179 GAAHVAAAPLIVSGRVSGVLAVERAAPASGEDAWLIEALADQAAVALAGPAEGAAHAGAR 238 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAG 364 P D + P + + + N +F + +Y A Sbjct: 239 EPPARLEADVQDERYRLLGRAIKDPIWDWDIRTDRVER-NATFHEVFRYTPEQTAPTGAW 297 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + +L + A++ ++ SA+ + + + + + Sbjct: 298 WVDRMLPEDRDRIARALEELI----HGDADTWSAQYRVYRGDGSVAR-VFDRGAVLRDAG 352 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + G + + + ++ +L A G ++ E + + +++++ Sbjct: 353 GRAIRMVGATVDLTERFRIESALQDREDRLRLATWAADVGTWRVDLETRYDTRDASLNRI 412 Query: 485 FGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 G + + + + + + + + + + + R Sbjct: 413 LGLDERETTQPVGDWLTRVHPEDLDAVIAMHERSVRERCIYDIIHRVVRADGSIRWVHDR 472 Query: 543 IIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKE--------------SSHKS 586 I S LT + DI+E KQ +++ + + ++ + K Sbjct: 473 GRIVADRDGSPLFLTGAVVDITELKQLEHERTELLRREQQALAQSEKDRIRAEDANRMKD 532 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA VSHE+RTPLTAI+G++ +IK++ P R + I+R+ + IV+D+L Sbjct: 533 EFLATVSHELRTPLTAILGWARLIKDKALAP---ERVKQGMASIERNAHAQAQIVDDILT 589 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +S+I +GK+ L V L + A+ + A K I IR + + D ++Q Sbjct: 590 VSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKAKEIEIRVEPGEGLSHVCGDPDRLQQ 649 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N+LSNA+ FTP G + + + + +V + V D G G+ L F Q +S Sbjct: 650 VMWNLLSNAVKFTPKRGLVTVRVGRSDS-QVAISVTDNGKGIATSFLPYVFDRFRQGDSS 708 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 G GLGL + + +V+ + G S G+ + PL Sbjct: 709 PTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGAGSTFTVTLPL 753 >gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio cholerae MZO-3] Length = 740 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 165/367 (44%), Gaps = 10/367 (2%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R+ +RK+ + IL+AT + + ++ +G L+ N L G Sbjct: 373 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 432 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +++ K + Q E + T ++ + + Sbjct: 433 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 492 Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + D++E K+ +++L AK+ A+ S K DFLA +SHEIRTP+ AI+G + Sbjct: 493 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 552 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + N +Y I+ S +L I+ND+LD SK+E+GK+N+ +LD+ Sbjct: 553 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 608 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725 + ++V L A EK I +IP ++ D + Q+ +N+ NA+ FT G + Sbjct: 609 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 668 Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + + V+DTG+G+ +L+ F Q NS + GTGLGL ++K Sbjct: 669 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 728 Query: 784 MVDANMG 790 +V+ G Sbjct: 729 LVELMGG 735 Score = 44.6 bits (104), Expect = 0.067, Method: Composition-based stats. Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + A G ++ + +G Y ++I ++ + +L +Q + Sbjct: 408 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 467 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ T + + + R + +G GI+ + ++ + Sbjct: 468 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 524 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 525 AMSQAKGDFLANMSHEIRTPMNA 547 Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344 L + S + E L E +D P P + + G Sbjct: 361 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 420 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N FL L + + I+ ++ + + + + + Sbjct: 421 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 474 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457 + + + ++ + GI + + + + ++ ++ Sbjct: 475 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 533 Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487 L S + I ++ + N + L G Sbjct: 534 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 581 >gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase [Geobacter bemidjiensis Bem] gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 460 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 93/425 (21%), Positives = 185/425 (43%), Gaps = 28/425 (6%) Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 +D A + + N + + Sbjct: 45 TYLLADLGTRPLRAVAAMASRIGKGEINTKLPAVTDPQVTELARVINEMAAKANAQLD-- 102 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++E E +L +IL +GI + + +G I N A LFG +++ + + ++ + Sbjct: 103 -RLEAEKNRLDAILRGMGEGIMVADPQGCITLVNPAFKGLFGLH-DEVEGR---LLIDIS 157 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 ++ +ILS + E KE LL + + + + HDIS+ Sbjct: 158 RHPALHESFRDILSSRQERVEELQLHSP-KERSLLVHWVPLVECGVVTGVVAVFHDISDL 216 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +Q + + DF+A VSHE+RTP+T I G++E + G L +P Sbjct: 217 RQME--------------KMRRDFVANVSHELRTPITIIKGYAETLL---AGALEHPTQA 259 Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ + + + + +V+DLL +S++ESG + L V + E + L++ E+ Sbjct: 260 TKFVSIVHSHADRLASLVSDLLTLSQLESGAVPLEARSVKVQEIAERVVVLLERKIRERG 319 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I++ + + P ++AD ++Q+ +N+L NA+ +TP+GG + +S V + V+D Sbjct: 320 IIVDLAGLKDAPSVMADPGRLEQVIVNLLDNAVKYTPAGGSVTLSAADREE-SVTIAVQD 378 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + +L + + F ++ +++ GTGLGL + K +V G S+ +G+ Sbjct: 379 TGIGIPSKDLSRIFERFYRVDSARSRDEGGTGLGLSIVKHIVQLQGGTVSAQSS-GQGST 437 Query: 804 IEIIF 808 + Sbjct: 438 FFVTL 442 Score = 44.2 bits (103), Expect = 0.098, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 65/241 (26%), Gaps = 16/241 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-TT 148 D G + ++ G + ++ G L D+S + + D+L + + Sbjct: 126 DPQGCITLVNPAFKGLFGLH-DEVEGRLLIDISRHPAL--HESFRDILSSRQERVEELQL 182 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 P E + L + L +G + H + + SH Sbjct: 183 HSPKERSLLVHWVPLV------ECGVVTGV--VAVFHDISDLRQMEKMRRDFVANVSHEL 234 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E + + P + + V S + A L T L E + Sbjct: 235 RTPITIIKGYAETLLAGALEHPTQATKFVSIVHSHADRLASLVSDLLT----LSQLESGA 290 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 +P + + + ++ PS+ A E + +D Sbjct: 291 VPLEARSVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSVMADPGRLEQVIVNLLDN 350 Query: 329 C 329 Sbjct: 351 A 351 >gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus johnsonii NCC 533] gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus johnsonii FI9785] gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC 6026] Length = 616 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 87/421 (20%), Positives = 178/421 (42%), Gaps = 35/421 (8%) Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 R ++ + S + ++ Q E + E + E +L Sbjct: 209 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 263 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L +DG+ +R G I N G +D++ KP T L + + + Sbjct: 264 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 318 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 +LS + + + +I + F S +HDI++ ++ + + Sbjct: 319 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 375 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 F++ VSHE+RTPLT++ + E + + + + + I Sbjct: 376 -----------QFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETE 422 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EKRILIRT 688 ++ ++NDLL +S+++ G + E V+L++ V+ ++ + +K+ I+ Sbjct: 423 RMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSIKR 482 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 F + + D + Q+ NI++NAI ++P GG I + + + VIL + D G+G+ Sbjct: 483 EFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGI 541 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L K F ++ ++ + GTGLGL ++K +V+A+ G+ + S G+ I Sbjct: 542 PRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISL 601 Query: 809 P 809 P Sbjct: 602 P 602 >gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC 27126] Length = 1033 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 106/511 (20%), Positives = 206/511 (40%), Gaps = 31/511 (6%) Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E E + D V G + ANP+ + Y + I + ++ Sbjct: 213 VRAIESERIQSAITDTAVDAILTVDDKGIIKTANPAVERIYGYTQQEIIG--MHAAEVVT 270 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + I + ++ + E + + K + P + Sbjct: 271 PERRHLYGDDFFSQRVVPTEQIIGTGREVEVLRKDGERIPVRLGVGYTKIDGKPVFVSFA 330 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYP 488 + + + + + S++ G+A ++ G ++ + AV+++ GYP Sbjct: 331 ---SDLRKRKEMEDALRESEAKFRSLISNIP-GMAYRCLSMPGWPMVFISDAVTEVTGYP 386 Query: 489 VEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 ED ++ FT + ++ K ++ + Sbjct: 387 PEDFTLPNPKRSFTDLYHPDDVERLSSI------SPDVGAFSYEYRIVAKSGEVKWVIEH 440 Query: 545 IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++ + DI+ K +N+L AK+ AE+ ++ ++ FLA +SHEIRTP+ Sbjct: 441 GVQVKDDDGMVLYVDGFISDITHRKVMENELKAAKEKAEQAAAARTAFLANMSHEIRTPM 500 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AIIGFS+++ + + I+RS +L ++ND+LD +K++ GK++L + Sbjct: 501 NAIIGFSDLMLGEAL----REEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLDYR 556 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 + E + IS L A K++ + + +++ ++Q+ N++ NA+ FT Sbjct: 557 DFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLNNLIGNAVKFT 616 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G ++ I+ + + V V DTG+GMT ++E+ PF Q S + GTGLG Sbjct: 617 HEG-EVTINVK-SDEKYVYFDVTDTGIGMTQEQVERVFDPFSQADASMSRKYGGTGLGTT 674 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 ++K +V+ G S KGT PL Sbjct: 675 ISKQLVELMGGNICATSEKGKGTTFTFRLPL 705 Score = 44.2 bits (103), Expect = 0.083, Method: Composition-based stats. Identities = 27/244 (11%), Positives = 69/244 (28%), Gaps = 27/244 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYG- 145 +D G +K + + + G ++IGM +V H+ ++ + G Sbjct: 236 VDDKGIIKTANPAVERIYGYTQQEIIGMHAAEVVTPERRHLYGDDFFSQRVVPTEQIIGT 295 Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202 + + +G + V + + + G F R + + + Sbjct: 296 GREVEVLRKDGERIPVRLGVGYT-------KIDGKPVFVSFASDLRKRKEMEDALRESEA 348 Query: 203 KFSHLHEIKKGHSS--VEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDD 252 KF L G + + + + PP + N S T+ Y D Sbjct: 349 KFRSLISNIPGMAYRCLSMPGWPMVFISDAVTEVTGYPPEDFTLPNPKRSFTDLYHPDDV 408 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + P + + + + ++ ++++ + + Sbjct: 409 ERLSSISPDVG----AFSYEYRIVAKSGEVKWVIEHGVQVKDDDGMVLYVDGFISDITHR 464 Query: 313 AYFD 316 + Sbjct: 465 KVME 468 >gi|298247709|ref|ZP_06971514.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550368|gb|EFH84234.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 747 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 98/509 (19%), Positives = 204/509 (40%), Gaps = 37/509 (7%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + S E VD G + N + + Y + + I ++ Sbjct: 250 ITESQAAQERLRALAAIVDSSDDAILSKTLSGIITSWNSAAQRIYGYTAQEMIGT--HVT 307 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L + + +M + ++ + + L ++ ++ Sbjct: 308 RLFPPDQ---YEEFEQIMARIRLGERVD-HFETRRVRKDGQE-LLVSVTISPIKDEDGVI 362 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + I + + R +E + +L + GI + + G +L TN+A L GY Sbjct: 363 HGASTIARDITEQRR----LEAKSQRL---FASNLIGIFVADETGRLLETNQAFLDLVGY 415 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++ + P+ L + + + T+ K K L + + + Sbjct: 416 TQDEWQAEALYAMTPPFFPASFLRPLIQSARAGDGSSDPQETILLHKSGKALPIFMALTC 475 Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + + + DISE K + + K F+ SHE++TP+T++ GF Sbjct: 476 IEHTQTCIGFVLDISERKALEQR--------------KDIFIGMASHELKTPVTSLKGFL 521 Query: 608 EV----IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + + Q GN + ++Y +D + ++NDLLD+S +++G+M E V Sbjct: 522 SLVQRLLSQQGMSQQGNEKILQYLARMDAQIEKLTKLINDLLDVSMMQTGQMIYREEQVD 581 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 +D V E + VQ R+L++ + D + Q+ +N+L NAI ++P+ Sbjct: 582 VDTLVREIVEDVQETTQTHRLLVQ---GEARATVFGDPDRLGQVLINLLQNAIKYSPNAN 638 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 ++I T +V++RV+D G+G++ +K + F ++ + ++ G G+GL +++ Sbjct: 639 TVLIHLGTTEE-QVLIRVQDFGLGISKEHHQKIFERFYRVTDQEEKTYPGMGIGLSISQE 697 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +V + G F++ S KG + + PL Sbjct: 698 IVKRHGGHFWVESERNKGAIFSLSLPLMQ 726 Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 20/232 (8%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLWP 151 G + + + G A +MIG + + + I ++ + + +T Sbjct: 281 GIITSWNSAAQRIYGYTAQEMIGTHVTRLFPPDQYEEFEQIMARIRLGERVDHFETRRVR 340 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G L V + ++ PI + G I +RL+ K L Sbjct: 341 KDGQELLVSVTIS--PIKDEDGVIHGAST--IARDITEQ-------RRLEAKSQRLFASN 389 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 V E + L + ++T + L+ Sbjct: 390 LIGIFVADETGRLLETNQAFLDLVGYTQDEWQAEALYAMTPPF-FPASFLRPLIQSARAG 448 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + SS P++ + +++ L +L D Sbjct: 449 DGSSDPQETILLHKSGKALPIFMALTCIEHTQTCIGFVLDISERKALEQRKD 500 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 19/261 (7%), Positives = 52/261 (19%), Gaps = 13/261 (4%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + + L + + + Q + + + +T Sbjct: 250 ITESQAAQERLRALAAIVDSSDDAILSKTLSGIITSWNSAAQRIYGYTAQEMIGTHVTRL 309 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + + E + + + +++ + Sbjct: 310 FPPDQYEEFEQIMARIRLGERVDHFETRRVRKDGQELLVSVTISPIKDEDGVIHGASTIA 369 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + + I FV G L N +FL L Y + A Sbjct: 370 RDITEQRRLE---AKSQRLFASNLIGIFVADETGRLLETNQAFLDLVGYTQDEW--QAEA 424 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + + D + L Sbjct: 425 LYAMTPPFFPASFLRPLIQSARAGDGSSDPQETILLHKSGKALPIFMALTCIEHTQTC-- 482 Query: 426 ENMPQNGIEPEDVDTRINKRK 446 G + + + +++ Sbjct: 483 -----IGFVLDISERKALEQR 498 Score = 38.9 bits (89), Expect = 4.0, Method: Composition-based stats. Identities = 46/444 (10%), Positives = 113/444 (25%), Gaps = 48/444 (10%) Query: 28 KKIDNGFETEKSKKE----------NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFD 77 +++D+ FET + +K+ +P D + ++ L++++ +F Sbjct: 329 ERVDH-FETRRVRKDGQELLVSVTISPIKDEDGVIHGASTIARDITEQRRLEAKSQRLFA 387 Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137 + D G L E ++ +G + L ++ P + + L+ Sbjct: 388 SNLIG---IFVADETGRLLETNQAFLDLVGYTQDEWQAEALYAMTPPFF--PASFLRPLI 442 Query: 138 KR-----QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDN 191 + ++ +T L G ALPI+ + G V Sbjct: 443 QSARAGDGSSDPQETILLHKSG---------KALPIFMALTCIEHTQTCIGFVLDISERK 493 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 F + + + + Q+ + + +Y A D Sbjct: 494 ALEQR----KDIFIGMASHELKTPVTSLKGFLSLVQRLLSQQGMSQQGNEKILQYLARMD 549 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 ++ + + D + Q ++ + +E E + Sbjct: 550 AQIEKLT--------KLINDLLDVSMMQTGQMIYREEQVDVDTLVREIVEDVQETTQTHR 601 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFY---ANPSFLLLTKYKSVDDIEIAGGLST 368 E D+ + Y AN + L+ + Sbjct: 602 LLVQGEARATVFGDPDRLGQVLINLLQNAIKYSPNAN-TVLIHLGTTEEQVLIRVQDFG- 659 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L + + + + + +I F + N+ Sbjct: 660 LGISKEHHQKIFERFYRVTDQEEKTYPGMGIGLSISQEIVKRHGGHFWVESERNKGAIFS 719 Query: 429 PQNGIEPEDVDTRINKRKMEIEVM 452 + + + + E Sbjct: 720 LSLPLMQRESQVLSQEEERERMKQ 743 >gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134] Length = 1367 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 141/779 (18%), Positives = 260/779 (33%), Gaps = 62/779 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTL 149 G + + K G +++G D+ P L+ W Sbjct: 314 DGTVTMCNNYWQKVTGYTKEEIVGKNYFDLFVQESERPERWNEFDKTLQNGGFWETSERT 373 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHL 207 + T I ++ + + E G G I +V + + L F + Sbjct: 374 ILTK-TGDVRYIQFNSVILNNEKGELGGLTKVGKDITENRKVMKALKQSNEALQDLFDNS 432 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +++ S K + + + + + K ++ + + E+ Sbjct: 433 NDLIFICSMRGKFLFVNKTFKKKTGYTNKELKKMNILDLLHQDTKKSTLSTVKSIIQGET 492 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTPE 324 + + K + ++ Sbjct: 493 VYNFITILSHKEGGNLYLEGSVTCRFEDGKPTAMRGILHDTTDKIRAEKAQTLYYSIANL 552 Query: 325 TVDKCPIPFF---VYSH-GNLFYANPSFLLLTKYKSVDD-----IEIAGGLSTLLDAPKL 375 TV + F ++ GN+ A ++ L ++ A L Sbjct: 553 TVRSKNMNQFYQSIHRELGNVIQAKNFYIKLYDSDHRQMSYHYYVDEAFASGGLEIRQNK 612 Query: 376 SDNN---------------AIKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMTFIPF 418 +D + L ++ ++ A I EN + Sbjct: 613 TDKGLAEYVVESKKALFLYEEEIQALAEAEGLILSGPAPKIWIGVPLKFENEVIGLISVK 672 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINRE 471 ++ + + + + + L +I E++S + INR Sbjct: 673 SYRDRNIYTIKDLELLDFVSGQIALAIQRKRNEAKLSSKTAQLQAIFESSSHVMWSINRN 732 Query: 472 GIILSTNRAVSKLF----GYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + S N ++ G + L + + + E Q E Sbjct: 733 WKLTSFNHNYAETLQRQYGVSPTLNRGLIQLSAKLRKTNNYKVWQKMYENAFKGETQYFE 792 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + E + + +L S HDI++ K + ++ AK+IAEK Sbjct: 793 IESDTQDGETWWREVYLNPIRLEDGRIEEVSAISHDITQKKLVEQEVIRAKEIAEKSLKV 852 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K FLA +SHEIRTP+ IIG +++ + + EY I +S +L+I+ND+ Sbjct: 853 KERFLANMSHEIRTPMNGIIGMIDLMMDTPLEN----KQQEYMYTIKKSSETLLNILNDI 908 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD+SK+E+GKM LH +P+ + V + +L A K + IP + AD Sbjct: 909 LDLSKLEAGKMALHPKPMDIRFMVEKVYTLFLQQAKAKNNFLSYQVDPKIPYFLEADETR 968 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKP 759 + QI N++SNAI FT G Q+ I T S E +++ V D+G+G++ + + Sbjct: 969 LIQIISNLMSNAIKFTEDG-QVAIKFTLASKGELSVHLLVEVADSGLGISPEDQNRLFST 1027 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 F Q+ NS GTGLGL ++K + G + S G+ F + P D Sbjct: 1028 FTQLDNSSSKSYSGTGLGLAISKELCRLMNGDIGVISEIGHGSTFWFTF----EAQPTD 1082 Score = 94.7 bits (234), Expect = 6e-17, Method: Composition-based stats. Identities = 43/335 (12%), Positives = 95/335 (28%), Gaps = 23/335 (6%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----------TPETVDKC 329 + + Y++ + +E E ++ Sbjct: 245 GQYRWIVEKGVPYLDARNHFRGYIASAVDITEQKMAEEEAKRIQLIKETKTRFQEALEGV 304 Query: 330 PI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + V + G + N + +T Y + + L + + Sbjct: 305 NLMGISVTTDGTVTMCNNYWQKVTGYTKEEIVGKNYF--DLFVQESERPERWNEFDKTLQ 362 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + TI + + F N+ E + + + R + ++ Sbjct: 363 NGGF---WETSERTILTKTGDVRYIQFNSVILNNEKGELGGLTKVGKDITENRKVMKALK 419 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 L + + ++D I I + G L N+ K GY +++ + L Q+T Sbjct: 420 QSNEALQDLFDNSNDLIFICSMRGKFLFVNKTFKKKTGYTNKELKKMNILDLLHQDTKKS 479 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWK 565 + I+ + IT+ S KE L L + +HD ++ Sbjct: 480 TLSTVKSIIQGET--VYNFITILSHKEGGNLYLEGSVTCRFEDGKPTAMRGILHDTTDKI 537 Query: 566 QEKNKLSHAKKIAEKESSHK--SDFLARVSHEIRT 598 + + + IA K + F + E+ Sbjct: 538 RAEKAQTLYYSIANLTVRSKNMNQFYQSIHRELGN 572 Score = 58.1 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 81/257 (31%), Gaps = 17/257 (6%) Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G + N + L + + D + + D AI+ + ++ Sbjct: 54 DDDGMIIDVNETTLHTHQCQREDIVNKSVKA---FCDRYQYDFQAIQQGIQDAWEQGTGK 110 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 ++ NR N L + + +K + ++I+++ + Q Sbjct: 111 VDLQV----LNRHNQLILRELVLKKMMYLSQQEVVVAFGKALYQSQISQKIISESESQFR 166 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I + + N + ++ + G VE+ + + + + + ++L Sbjct: 167 TIANHAPVLLRMSNPQHQFYFFSKQWLEFTGKTVEEEINEGWLKNVHPTDYEGVKNHL-- 224 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571 + S + ++ E + + + + Y + DI+E K + + Sbjct: 225 LKSFEKQKKYEVVYRLLRHTGQYRWIVEKGVPYLDARNHFRGYIASAVDITEQKMAEEEA 284 Query: 572 SHAKKIAEKESSHKSDF 588 K + K+ F Sbjct: 285 ----KRIQLIKETKTRF 297 >gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1000 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 113/657 (17%), Positives = 224/657 (34%), Gaps = 37/657 (5%) Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 F GF+ G+ R + L + ++ L G + IF + L Sbjct: 195 FLGFQLHGLAE--RFRSAAEQLRESEERWNFALEGAGDGVWDWNLAQDTIFLSRKWKEML 252 Query: 235 RMKNKVSSLT------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + + D L+ + Sbjct: 253 GFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLRKDGTACWILDR 312 Query: 289 FGTL-QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGNLF 342 + ++ ++ + +E + E T+ G + Sbjct: 313 GRVVARDAEGNPVRFIGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVT 372 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 NP LT + I ++ + + + PV ++ S Sbjct: 373 LMNPVAEKLTGWTQSSAIGKPVSAVFVIISA-TTKQSLPSPVEEVLRTGRTVSLSNDTTL 431 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + + E + + KRK+ + + L+ Sbjct: 432 VSRSGREFQ-IADSAAPIHDASGEMSGVVMVYTDVTQQYRFKRKLAESEHRFRTALDEAP 490 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 + + + G +L NR S L GY + + + E Sbjct: 491 FPVLLHDARGDVLMLNRQWSLLTGYEPSQV------PTIHRWKDLSAPEIDPESRFSGQA 544 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTM--HDISEWKQEKNKLSHAKKIA 578 ++ + + L + + + +L + + D++ + L +KK A Sbjct: 545 RSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAA 604 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 E ++ K++FLA +SHEIRTPL I+G +++ + + +Y + S + Sbjct: 605 ESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVSNAISSSGRLS 660 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697 +++D+LD+S+IE+G + L E V+ E + L L ++ + + +P+ I Sbjct: 661 QLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGLPQHI 720 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYE 752 L D ++QI N++ NA+ FT G I + + + +++ V DTG+G+ Sbjct: 721 LLDGGRLRQILFNLVGNALKFTEKG-HIHVRLDELAIHGGMRQLLLISVEDTGIGIPQGA 779 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + PF Q+ S R G GLGL + + +V A G I S +GT I + P Sbjct: 780 MRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 36/384 (9%), Positives = 83/384 (21%), Gaps = 32/384 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQ-N 141 W+ + +S + + +G +++ ++ ID I L + Sbjct: 232 VWDWNLAQDTIFLSRKWKEMLGFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTD 291 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL- 200 + + +GT ++ + R G + Sbjct: 292 QYEHVYRMLRKDGTACWILDRGRVVA-RDAEGNPV--RFIGTHTDITAQKLSEESARASG 348 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------------VSSLTEYYA 248 + L I + +++ + S T + Sbjct: 349 ENLAVTLSSIGDAVIATDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQS 408 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 V + + S + + S Y Sbjct: 409 LPSPVEEVLRTGRTVSLSNDTTLVSRSGREFQIADSAAPIHDASGEMSGVVMVYTDVTQQ 468 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E E+ +D+ P P ++ G++ N + LLT Y+ I Sbjct: 469 YRFKRKLAESEHRFRTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKD 528 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + D + +D I+ + E Sbjct: 529 ---LSAPEIDPESRFSGQARSTDGE--------QNIRCSDGTLRTWNVSMIELGAMPDGR 577 Query: 428 MPQNGIEPEDVDTRINKRKMEIEV 451 + R ++ Sbjct: 578 HITMLAAVDVTVQSETMRALQRSK 601 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 6/248 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144 D G + ++ K G IG + V I+ + + ++L+ T Sbjct: 365 TDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLRTGRTVS 424 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + I +A PI+ + E SG + + + +F Sbjct: 425 LSNDTTLVSRSGREFQIADSAAPIHDASGEMSGV--VMVYTDVTQQYRFKRKLAESEHRF 482 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + D+ L T + + + + Sbjct: 483 RTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKDLSAPEIDPESRFSG 542 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + S +++ + T L + ++ + + + Sbjct: 543 QARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKK 602 Query: 325 TVDKCPIP 332 + Sbjct: 603 AAESANAA 610 >gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB] gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB] Length = 583 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 119/580 (20%), Positives = 217/580 (37%), Gaps = 37/580 (6%) Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296 +V + + + LL E + L ++ Sbjct: 29 TEQVRRNETWKIEESLLNYARLTALLPLPEMADQIGHLEKVSEARVTVIDAGGHVLADSQ 88 Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPET-----VDKCPIPFFVYSHGNLFYANPSFLLL 351 ++ H N P + +G VD + + ++ L Sbjct: 89 VDAPRMEDHMNRPEVQEARIKGSGKAIRQSHTLQVDMLYVALALRDGESIRGYVRMARSL 148 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + ++ G L + + ++ R + I+ Sbjct: 149 LEVEH--AVDRMYGSLYRAIGFALVPALLLAFLYTWKISRPVLEMRDYTRAIRRGELPGT 206 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + E + I + R R E +L S L + +G+ I++ Sbjct: 207 LLVDSADELGQVAED------INYLVTEYREKIRLAHEEKGKLESALASMVEGVVILDSR 260 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 I S N+A+ + P +I K R+ + + Sbjct: 261 NRIESCNQAIEAILERPETEIREKTLLEAFLNADLQNALDRFRM-----ERKPVLQEIRL 315 Query: 532 STKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ +++ + I K L HD++ K+ + ++DF+ Sbjct: 316 GRKDPRVVDVSISAIKDLPDGVEKTMLVFHDVTRLKKLE--------------QIRTDFV 361 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A V+HEI+TPLTAIIGF + + + ++ I + + +V+DLL +S Sbjct: 362 ANVTHEIKTPLTAIIGFLQTLLDGALD--DRETARKFLQTIATNAERLSRLVDDLLTLSS 419 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 IE + +LH EP+S+D + + +V A K IL+ ILAD QI + Sbjct: 420 IELNETSLHLEPLSVDVLIRSILPMVNADAKAKNILLNVDLPEAFLNILADRDRAAQILM 479 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 N+L NA+ FTP+GG + +S + VI++V DTG+G+ E+ + + F ++ ++ Sbjct: 480 NVLHNAVKFTPAGGIVTVSGSEEEKGNFVIIQVVDTGIGIPPREIPRLGERFYRVDKARS 539 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K ++ A+ GK I STP KGT++ + F Sbjct: 540 RELGGTGLGLSIVKHLMAAHGGKMRIESTPGKGTIVSLFF 579 >gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus Desulforudis audaxviator MP104C] Length = 444 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 162/360 (45%), Gaps = 26/360 (7%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 E ++ +IL++ +DG+ ++RE ++ N V + FG E L + + + Sbjct: 110 EKNRMQAILDSMADGVIAVDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDY---EL 166 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + L L++ T E ++ + + + P DI+E +Q + Sbjct: 167 DRLFRQALDSGRP--LKQELRILTPEPRIFRVHLTPLRGP-QGGVVALFRDITERRQLE- 222 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +++F+A SHE+RTPLT+I GF E +++ + Sbjct: 223 -------------QMRTEFVANASHELRTPLTSIRGFIEALRDGAINE--PETARRFLGI 267 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I+ + + ++V+DLL ++ IE + PV L V A+ A +K + +R Sbjct: 268 IEEETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALRVE 327 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 A+ +P ++ D + + Q+ +N+L NA+ FT G +I I V + V DTG G+ Sbjct: 328 LADGLPPVIGDQKLLTQMFINLLDNAVKFTEKG-EITIRAAAAEGG-VEVEVLDTGAGIA 385 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + F + ++ GTGLGL + K +V+ + G+ + S P KGT + P Sbjct: 386 PEHLPRIFERFFRGDKART--QGGTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLP 443 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 32/327 (9%), Positives = 73/327 (22%), Gaps = 25/327 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D + I+ + + G +G + +V +D L + Sbjct: 128 VDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDYELD--RLFRQALDSGRPLKQELR 185 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + E V P+ + + SH Sbjct: 186 ILTPEPRIFRV----HLTPLRGPQGGV-----VALFRDITERRQLEQMRTEFVANASHEL 236 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEES 267 E + P R + T+ DD+LK + Sbjct: 237 RTPLTSIRGFIEALRDGAINEPETARRFLGIIEEETDRLTELVDDLLKLATIEERRNMFG 296 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 LP + T + +++ L L + + LT ++ Sbjct: 297 RLPVELPGVVQRA--------VDTFASRARQKGVALRVELADGLPPVIGDQKLLTQMFIN 348 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G + + V+ ++ G++ Sbjct: 349 LLDNAVKFTEKGEITIRAAAAE---GGVEVEVLDTGAGIAPEHLPRIFERFFRGDKARTQ 405 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMT 414 +A + ++ + M+ Sbjct: 406 GGTGLGLAIVKHI--VEGHGGRIRVMS 430 >gi|270308765|ref|YP_003330823.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154657|gb|ACZ62495.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1092 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 115/748 (15%), Positives = 219/748 (29%), Gaps = 47/748 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147 DA + P G A + IG + D++ + D LK + T Sbjct: 231 DADFIVTRWEGAAPHIFGWGASETIGKSVYDLNIVYEPDAPIVEQTIKTLKEGISSQVVT 290 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +Y N + V + +K + L Sbjct: 291 LNRNYTKDGRVIHCTWYNSALYDSNNKMISMM--SQVEDSTEHERIETALAENEKHYREL 348 Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS- 264 +E + K +V + L K Sbjct: 349 YEQSPAGYQSLDQNGVFIEVNRLWLDTLGYQKEEVIGHWFGEFVASEDLDKFKKNFPRFV 408 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGEN 320 + + E + E + Sbjct: 409 KAGHTHVDFKMKRKDGQIIIVAFEGRIAYTPKGEFKQTHCIIQDITERYKAEEATREHKE 468 Query: 321 LTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + V+ G AN + + L Y + ++++ + Sbjct: 469 RYEALFNSNNDAILVHQPQGELTPGTFIEANDAAITLLGYNREELLKLSPF--DITKNDN 526 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 +S + + R I +R K I Sbjct: 527 MSSEPVKRTMESLRQTGK---VQNERIFIHKDRHEIPVEINARLFKYKGIDT---VITIV 580 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + + + ++ D IAI++ + IL N A + G+ D++ Sbjct: 581 HDITTRKQAEAALTHAAEEWRTTFDSIKDMIAIVDPKHTILRVNLAFANALGFKPNDLVG 640 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552 K + L ++ E K + + Sbjct: 641 KHCYEVIHGMNQPHPMCPHARTLQSKHVESSEY---YDKKLKLWVEASSSPIFDNKGDLT 697 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DIS+ KQE+ + + AE S + A ++HEI PLT +IGFSE++ Sbjct: 698 GSVHVIKDISKRKQEELQQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELL 757 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 ++ P + I+ +I+ +L ++ + V + + Sbjct: 758 LERKDLP---DDVKDNLQIINEGSQRAREIIKRMLTFAR----QSTPQMNRVDITSLIDH 810 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSGGQIII 727 + L I + + N+P ++AD ++Q+ LN++ NA H G + I Sbjct: 811 TLELRNYVLATANIKVIKDYDANLPWVIADPGQLQQVFLNLIVNAEHAMKKAHDKGILTI 870 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 T + + + + V D G GM + L+K +PF GEGTGLGL L+ ++ Sbjct: 871 QTK-SLGDSIRISVTDDGPGMPDEVLKKLFQPFFTTKEP----GEGTGLGLSLSLGIIQE 925 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + G S KGT + P ++ Sbjct: 926 HNGTIRAESKAGKGTTFIVELPAAADAY 953 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 28/299 (9%), Positives = 79/299 (26%), Gaps = 19/299 (6%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLST 368 + E P+ + + + + + + + I + Sbjct: 204 TALEAIKESSEKLRLHTQNSPLATIEWDADFIVTRWEGAAPHIFGWGASETIGKSVYDLN 263 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 ++ P ++ + + + + + + + Sbjct: 264 IVYEPDAP---IVEQTIKTLKEGISSQVVTLNRNYTKDGRVIHCTWYNSA-LYDSNNKMI 319 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + + E + G +++ G+ + NR GY Sbjct: 320 SMMSQVEDSTEHERIETALAENEKHYRELYEQSPAGYQSLDQNGVFIEVNRLWLDTLGYQ 379 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RII 544 E+++ F F+ + K+ +++ + RI Sbjct: 380 KEEVIGHWFGEFVASEDLDKFKKNFPRFVKAGHTHV---DFKMKRKDGQIIIVAFEGRIA 436 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----EIRTP 599 + DI+E + + K+ E + +D A + H E+ TP Sbjct: 437 YTPKGEFKQTHCIIQDITERYKAEEATREHKERYEALFNSNND--AILVHQPQGEL-TP 492 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 55/549 (10%), Positives = 138/549 (25%), Gaps = 44/549 (8%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 T ++E + + ++D +G E++ T+G ++IG + Sbjct: 335 ETALAENEKHYRELYEQSPAGYQ-SLDQNGVFIEVNRLWLDTLGYQKEEVIGHWFGEFVA 393 Query: 124 ILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 +D + +K +T +G + V + Y+ EF + Sbjct: 394 SEDLDKFKKNFPRFVKAGHTHVDFKMK-RKDGQIIIVAFE--GRIAYTPKGEFK--QTHC 448 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241 I+ + +++ L V + + ++ + + Sbjct: 449 IIQDITERYKAEEATREHKERYEALFNSNNDAILVHQPQGELTPGTFIEANDAAITLLGY 508 Query: 242 -SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 D+ K + + + ++ N + K + F Sbjct: 509 NREELLKLSPFDITKNDNMSSEPVKRTMESLRQTGKVQNERIFIHKDRHEIPVEINARLF 568 Query: 301 EYLS----------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349 +Y A T D + + N +F Sbjct: 569 KYKGIDTVITIVHDITTRKQAEAALTHAAEEWRTTFDSIKDMIAIVDPKHTILRVNLAFA 628 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 +K D + + N P+ + + ++++ Sbjct: 629 NALGFKPNDLVGK-------HCYEVIHGMNQPHPMCPHARTLQSKHVE---SSEYYDKKL 678 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTR--INKRKMEIEVMQLCSILEATSDGIAI 467 L + + + + + + +++ ++ S L A + Sbjct: 679 KLWVEASSSPIFDNKGDLTGSVHVIKDISKRKQEELQQQQLRNKAEMSSRLAAVGEM--- 735 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 GI N ++ + G+ + RK + + E Sbjct: 736 --AAGIAHEINNPLTGVIGFSELLLERKDL-----PDDVKDNLQIINEGSQRAREIIKRM 788 Query: 528 ITLGS--TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 +T T + + + +I Y L +I K L + Sbjct: 789 LTFARQSTPQMNRVDITSLIDHTLELRNYVLATANIKVIKDYDANLPWVIADPGQLQQVF 848 Query: 586 SDFLARVSH 594 + + H Sbjct: 849 LNLIVNAEH 857 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 15/150 (10%), Positives = 50/150 (33%), Gaps = 7/150 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ +L + + + + I+ A +FG+ + + K Sbjct: 203 KTALEAIKESSEKLRLHTQNSPLATIEWDADFIVTRWEGAAPHIFGWGASETIGKSVYDL 262 Query: 501 --LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557 + + ++ + + Q + TK+ +++ L S+ ++ Sbjct: 263 NIVYEPDAPIVEQTIKTLKEGISSQVVTL-NRNYTKDGRVIHCTWYNSALYDSNNKMISM 321 Query: 558 ---MHDISEWKQEKNKLSHAKKIAEKESSH 584 + D +E ++ + L+ +K + Sbjct: 322 MSQVEDSTEHERIETALAENEKHYRELYEQ 351 >gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T] Length = 833 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 168/396 (42%), Gaps = 16/396 (4%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + + R + L + G+ ++ G + + +L GY Sbjct: 18 EAELSRLRAERDAALRSLARARRHLDLVSANAGAGVWYMDLRGGSIRLDERWRRLLGYDG 77 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIK 546 D + ++ + + L L L ++ L + Sbjct: 78 GDAG--DWMALVDDEGRAALQQALRAHL-GGEAAELRAEIRIRAQDASWHWLEVCGNASG 134 Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + T D++E K + +L AK+ AE S K DFLA +SHEIRTP+ II Sbjct: 135 RGEDGRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGII 194 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ + EY + S +L I+ND+LD S+IE+G++++ SL Sbjct: 195 GMTDLLLDSTIAG----EQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSL 250 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723 VSE + L A++K + + A ++P + D ++QI +N++ NAI FT G Sbjct: 251 HSVVSETCRALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGE 310 Query: 724 -QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ + + + VRDTG G+ +LE F Q NS + GTGLGL + Sbjct: 311 VEVRVRCVQRNGGAASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAI 370 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + + G+ + S P G+ E+ PL + P Sbjct: 371 CRQLTELMGGRIGVDSVPGAGSRFEVTLPLRAVADP 406 >gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator [Synechococcus sp. PCC 7002] gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS and HAMP domains [Synechococcus sp. PCC 7002] Length = 1280 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 99/404 (24%), Positives = 182/404 (45%), Gaps = 21/404 (5%) Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + E + ++++ + + AT+DGI Sbjct: 547 RQQFQAIQATTLNLEEQVETRTKALSEEVRQRELIEQQLRQSEERYELAIAATNDGIWDW 606 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRK-----PFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 + + +R+ +L GY ++ + + + + + +T L L Sbjct: 607 DLRSDQVYRSRSWFRLLGYKESNLQPRITGRQMWADLVHPDDLAQAQAAMTNHL-QGLTA 665 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579 + + + + + + K L T+ DI++ + + +L AK+ AE Sbjct: 666 SYQNVHRLRHCDGQYRWILSKAKCLKDEQDNPYRIVGTITDITDKVEAEIQLKLAKEDAE 725 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + + KS+FLA +SHEIRTP+ A+IG +E++++ + E+ + I SG+ +L Sbjct: 726 QANRAKSEFLATMSHEIRTPMNAVIGMAELLRDTDLTA----QQQEFIDIIRNSGSNLLA 781 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698 I+ND+LD SKIESGK L +P +L + + L+ A K I + ++P ++ Sbjct: 782 IINDILDFSKIESGKFELELQPFNLQTCLENCLDLMSTRAIAKPIYLSYILDPDVPHHLM 841 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEEVILRVR--DTGVGMTNYE 752 D+ +QI LN+L NA+ FT G + T ++V LR DTG+G+ + Sbjct: 842 GDVTRFQQIMLNLLGNAVKFTNRGDVSLWVQKVPTATGDGDQVCLRFAILDTGIGIPAQQ 901 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + +PF Q S R GTGLGL ++K +V+ GK ++ S Sbjct: 902 MTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGGKLWVES 945 Score = 45.8 bits (107), Expect = 0.030, Method: Composition-based stats. Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 7/148 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYA----FKMIGMR-LCDVSDILHIDPNNHIGDLLKRQ 140 W+ D S + +G ++ G + D+ + + Sbjct: 603 IWDWDLRSDQVYRSRSWFRLLGYKESNLQPRITGRQMWADLVHPDDLAQAQAAMTNHLQG 662 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 T + Y I A + +R G + + K Sbjct: 663 LTASYQNVHRLRHCDGQYRWILSKAKCLKDEQDNP--YRIVGTITDITDKVEAEIQLKLA 720 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + K + + Sbjct: 721 KEDAEQANRAKSEFLATMSHEIRTPMNA 748 >gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740] gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes] Length = 538 Score = 336 bits (861), Expect = 1e-89, Method: Composition-based stats. Identities = 108/382 (28%), Positives = 175/382 (45%), Gaps = 18/382 (4%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ + + + ++A+ I I + G I+ N + ++ GY E++L P Sbjct: 126 AEQEETKRSQRLLEEYKKAVDAS--AILSISDLSGNIIFANEKLCEITGYTREELLGHPH 183 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 ++F +TP + L + + + K + + + L + Sbjct: 184 SMFRHPDTPKEVFERLWSTILEGK--IWKGMLKNRKKNGEPYYVDATVVPLMDENNQITQ 241 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + ++I+ + +N L A K AE+ K FLA +SHE+RTPL IIGF ++ + Sbjct: 242 FLGLCYEITSLIRAQNALRVALKRAEEADRVKGVFLANMSHEMRTPLNGIIGFGRLLLEE 301 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N EY ID+SG +L I+ND+LD+SKIESGK L P+ L E + Sbjct: 302 NL----NQEQREYVEIIDKSGEHLLGIINDILDLSKIESGKFELESLPMKLSEELRAVAD 357 Query: 674 LVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-H 731 ++ A EK + + F I D+ +KQ+ N+L NAI FTP GG++ + Sbjct: 358 FCEVKAREKGVKLLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFTPEGGEVRLGVEVL 417 Query: 732 TSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 EE I V DTG+G+ LEK +PF Q +S GTGLGL +++ +V Sbjct: 418 EEREEAIALDFSVSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTGLGLSISQELVRLM 477 Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810 G+ S KG+ L Sbjct: 478 GGEMRCQSEEGKGSRFSFTLTL 499 Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 5/119 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148 D G + +E+L + G +++G + + W G Sbjct: 155 DLSGNIIFANEKLCEITGYTREELLGHPHSMFRHPDTPKEVFERLWSTILEGKIWKGMLK 214 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFS 205 G YV + +P+ N + + F G I + R N R KR ++ Sbjct: 215 NRKKNGEPYYVDATV--VPLMDENNQITQFLGLCYEITSLIRAQNALRVALKRAEEADR 271 >gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans LB400] Length = 776 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 112/615 (18%), Positives = 218/615 (35%), Gaps = 25/615 (4%) Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + + +F Q P L+M+ V+ + H+D P+L + Sbjct: 52 ARHIQDLLSAGGKVFYQTHWAPLLQMQGSVAEVKLNMLHRDG----HMLPMLLNAARRRH 107 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + + + + + + S H E ++ + Sbjct: 108 GEVAYLEVAVLIVADRHKYEQ-ELLLARRNAEASVAAHQLAQKELQESRDVLSLAMRGAR 166 Query: 331 IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 + + + G + + L Y GG L+ L + V Sbjct: 167 MGAWSHEPKSGRF-WWSRELEALAGYAEGRFASTPGGFFELIHPGDL--IALNEAVDHAV 223 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 A R + M + + G+ + + + + + Sbjct: 224 ETGDDYVAEFRFLHASGD---WCWMEGRGRAAYDHHGVPLMIYGLGIDITERKEAQTVLL 280 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + +I E SD I I + G I N ++ GY + +IL KP +FL Sbjct: 281 RQ----AAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKPVAMFLPPEQAPG 336 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 + L+ + E + + + DI+E ++ Sbjct: 337 IRREALAALAAEGTWRGELPFVRHDGSRGVCETVVKPLANARGDIYGAVSINRDITERRR 396 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + +L+ K K +FLA ++HE+R PL + E+++ + F + Sbjct: 397 AEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDV 456 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + R + +V+DLL++S+I GK+ L + + L A+ A+ + + Sbjct: 457 FD---RQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARPTVQASSHHL 513 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + ++AD + Q+ LN+L+NA +TP GG I + +E ++ VRD+G+ Sbjct: 514 SVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISL-AAEREGDEAVIVVRDSGI 572 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805 G+ L+ + F Q+ + G G+GL L + + + + G FS P KG+ Sbjct: 573 GIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSEGPGKGSEFM 632 Query: 806 IIFPLYDTS-HPHDC 819 I PL T+ P D Sbjct: 633 IRLPLTATALQPSDS 647 Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 37/391 (9%), Positives = 98/391 (25%), Gaps = 32/391 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILH-----------IDPNNHIGDL 136 D +G + ++ +G A ++ G + D+ + + ++ Sbjct: 25 TDTNGRILRVNATFCGWLGYEAAELAGARHIQDLLSAGGKVFYQTHWAPLLQMQGSVAEV 84 Query: 137 ----LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRV 189 L R +++A L + R +E R V Sbjct: 85 KLNMLHRDGHMLPMLLNAARRRHGEVAYLEVAVLIVADRHKYEQELLLARRNAEASVAAH 144 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLT 244 + L + D + + G S E + + + R + Sbjct: 145 QLAQKELQESRDVLSLAMRGARMGAWSHEPKSGRFWWSRELEALAGYAEGRFASTPGGFF 204 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 E D + E + F + + + ++ Sbjct: 205 ELIHPGDLIALNEAVDHAVETGDDYVAEFRFLHASGDWCWMEGRGRAAYDHHGVPLMIYG 264 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + + + GN+ N + Y+ + + Sbjct: 265 LGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKP 324 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + P+ + + + ++ T L ++ + + T AN Sbjct: 325 V---AMFLPPEQAPGIRREALAALAAEGT---WRGELPFVRHDGSRGVCETV-VKPLANA 377 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + I + + R ++++ ++L Sbjct: 378 RGDIYGAVSINRDITERRRAEQQLTRLNLEL 408 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 4/132 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ E + G+ + + G IL N GY ++ L V Sbjct: 13 ALFEHAACGLLVTDTNGRILRVNATFCGWLGYEAAELAGARHIQDLLSAGGKVFYQTHWA 72 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLS 572 L E ++ +L + + + + +++ + + +L Sbjct: 73 PLLQMQGSVAEVKLNMLHRDGHMLPMLLNAARRRHGEVAYLEVAVLI-VADRHKYEQELL 131 Query: 573 HAKKIAEKESSH 584 A++ AE + Sbjct: 132 LARRNAEASVAA 143 >gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 676 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 113/533 (21%), Positives = 201/533 (37%), Gaps = 41/533 (7%) Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 G + A + FV G + N Sbjct: 15 AGRPARRLGRLTGRTGATCPAAHMAEAASRLTRLSSIIAALDQGIAFVAPDGVVVEINDR 74 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 +L L + + L + D A + L+R S + Sbjct: 75 YLTLLDLPREAVLGQPLAILDL----ETEDYQAGAFLDLFRRGAAHAPVSFDRRLCDRD- 129 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + +E E L ++ I I Sbjct: 130 ------VTAKLQPVLEDGVFTGLIVSLIDVTPLVEARLSVEREKSFLEQVITIAGAAICI 183 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +NR+ ++++ N + + GY + L + L ++ PS ++ Sbjct: 184 VNRDDVVVTINDEFTAITGYSRDQALGRRRGELLRESPPSPCPA------RPGDASVQKR 237 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + T++ + +++ + S + D+S+ + + AE+ S Sbjct: 238 QSQILTRDGRRVTILKNAAPIRDSQGLATGGIESFADVSDLIRA-------RVEAEEASR 290 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTPL AI+G S+++ +P+ E + +G +L ++ND Sbjct: 291 MKSAFLANMSHEIRTPLNAIMGLSQLLLKTG----PSPQQRECLETMRSAGEGLLVVLND 346 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLR 702 +LD S+IE G++ + PV LD + E ++ A+E+ + + +PR+ + D Sbjct: 347 VLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPV 406 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVILRVRDTGVGMTNYELEKA 756 +KQI LN+LSNAI FTPSG ++ + + V RVRDTG G+ E+ Sbjct: 407 RLKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRDTGPGIPEELRERI 466 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK-FYIFSTPAKGTLIEIIF 808 +PF Q ++ GTGLGL ++ +V G + S P KG+ Sbjct: 467 FEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGSTFHFTL 519 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 28/344 (8%), Positives = 73/344 (21%), Gaps = 22/344 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ++ + I++E G + +G R ++ P + + K Sbjct: 184 VNRDDVVVTINDEFTAITGYSRDQALGRRRGELLRESPPSPCPA-----RPGDASVQKRQ 238 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + V I A PI G F V + + + K + L Sbjct: 239 SQILTRDGRRVTILKNAAPIRDSQGLATGGIESFADV--SDLIRARVEAEEASRMKSAFL 296 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + + + + V+ + E Sbjct: 297 ANMSHEIRTPLNAIMGLSQLLLKTGPSPQQRECLETMRSAGEGLLVVLNDVLDFSRIEVG 356 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 L + ++ ++ + + P ++ ++ Sbjct: 357 RLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPVRLKQI--LLN 414 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G + A L +D P + + + Sbjct: 415 LLSNAIKFTPSGRVVLA----AALPYPPKAEDAPTPVQFRVRDTGPGIPEELRERIF--- 467 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 A + + L ++ + + Sbjct: 468 -----EPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVD 506 Score = 47.3 bits (111), Expect = 0.011, Method: Composition-based stats. Identities = 48/473 (10%), Positives = 110/473 (23%), Gaps = 38/473 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + EI++ + ++G L + DL +R + Sbjct: 64 PDGVVVEINDRYLTLLDLPREAVLGQPLAILDLETEDYQAGAFLDLFRRGAAHAPVS--- 120 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + P+ + F+G ++ V + ++ + + Sbjct: 121 -FDRRLCDRDVTAKLQPVL-EDGVFTGLI-VSLIDVTPLVEARLSVEREKSFLEQVITIA 177 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 V ++ + + S + P Sbjct: 178 GAAICIVNRDDVVVTINDEFTAITGYSRDQA--------LGRRRGELLRESPPSPCPARP 229 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + Q R+ L+ E + + Sbjct: 230 GDASVQK------RQSQILTRDGRRVTILKNAAPIRDSQGLATGGIESFADVSDLIRARV 283 Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + F AN S + T + GLS LL S + + Sbjct: 284 EAEEASRMKSAFLANMSHEIRTP------LNAIMGLSQLLLKTGPSPQQRECLETMRSAG 337 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---- 446 + + L + +P + E ++ + + Sbjct: 338 EGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKL 397 Query: 447 ---MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + ++L IL G ++ YP + F + Sbjct: 398 PRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLA-----AALPYPPKAEDAPTPVQFRVR 452 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 +T + L E + Q + + LS+ + +L + S+ Sbjct: 453 DTGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSV 505 >gi|255533254|ref|YP_003093626.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255346238|gb|ACU05564.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 713 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 112/746 (15%), Positives = 257/746 (34%), Gaps = 77/746 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNN------HIGDLLKRQ 140 + Y+ S+ + + G + + D + + +L+ + Sbjct: 25 LSPDLYILTASDLYLQATKTTRDAIKGKHIFEAFPDNPDLPDADGVQNINASLQVVLRTK 84 Query: 141 NTWYGKTTLWPIE-----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + + G + D P+ S I+ + D Sbjct: 85 KPDQMPIQRYDVPDMENPGKFIRRYWDPCHSPVLDSEGNIS-----YIIQLATNVTDKIL 139 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 + L + E + S++ E ++ ++ LT + + Sbjct: 140 AERALHQSHLENLETTEQVSALNAELL--------ATNVELRETQRQLTLLNEQLEGRVA 191 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L + E E+ N +Q + + + Sbjct: 192 KRTDELRQAVEEQAAVNEEMEATNEELIQIQQNLEQINRELTAGESRFRMAVESTGLGTW 251 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 D + ++ ++ + + Sbjct: 252 DYIPATGE------------------LQWSKECRMIFGLDGDQPVDFETYTRHIFPEDRQ 293 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + I + + I+++ + + + Q + G Sbjct: 294 FVASRINSSLQSKFSGR---YEITHRIIRFDNKEVRWVKAQGTVQF-QAGKASRFLGTVL 349 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + + ++E + +L +I+ ++D I E +I S N + ++FGY +I+ + Sbjct: 350 DITELK----QVEEKSARLAAIVATSNDAIISKTLESVITSWNDSAERMFGYTSTEIIGE 405 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553 + + LT + + + + T TK+ +L+ + + I + S Sbjct: 406 TIYKLIPADRQDEEPMILTRLKAGE--RVEHFETKRQTKDGRLIDVSLTISPIKDSHGNI 463 Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +S DISE KQ + K+DF+A VSHEI+TPLT++ ++++ Sbjct: 464 TGFSKIARDISERKQNDIR--------------KNDFIAMVSHEIKTPLTSMSAILQMLQ 509 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 +F + + + + + +++ L+IS++ESGK+ ++ + ++ E + E Sbjct: 510 R-KFAESEDVLVSQLLDRANLQVKKMNKMISGFLNISRLESGKIQINRQVFNICELIKEV 568 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ + L I IR + + ++AD + + N+L NAI ++P G ++ I + Sbjct: 569 VAEINLTGINHIINIR-ECEDAV--VMADREKIDSVLSNLLGNAIKYSPKGSEVTIDC-Y 624 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + V +RV D G+G++ + + ++ + + G G+GL L+ +V + GK Sbjct: 625 KQDSYVCIRVSDRGLGISEADCGHVFDRYYRVESDPISQASGFGIGLYLSAEIVHRHDGK 684 Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPH 817 ++ S KG+ PL P Sbjct: 685 IWVESEIGKGSQFYFSLPLEGIRKPE 710 >gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str. 1873] Length = 551 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 91/506 (17%), Positives = 195/506 (38%), Gaps = 22/506 (4%) Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E + P F + +AN + L + DI + Sbjct: 18 DEEFYKNLIRILPEAVFFEKDKKIIFANDEGIKLLEGIERSDIIGKKIDEFIYSNFIKIL 77 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + I + + N+ E + I + Sbjct: 78 DLNKE------KKLNSDNENVIEQKIITLNNKVIDVEVKSIYLFNKNREKIKVV-IVRDI 130 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKP 496 + + ++ + + E G++I N + + N+ + G +D++ Sbjct: 131 TERKRYEKALCESEYLHRKLTELLPVGVSIHNYDM-VEFANKTCLNMLGIKDEKDLINNS 189 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554 F+ ++ L I + E K+ +++ + + Sbjct: 190 IFKFIHESKIKDSKERLKTIFEYGGKTLPEFYNKFIRKDGQIIDVETWSTTFYDENKLKI 249 Query: 555 SLTMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG--- 605 D++E+ Q + + + + +++F A +SHE++TPL I+ Sbjct: 250 LSVFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSSQQ 309 Query: 606 -FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 + ++N F + + ++ + ++ N +L ++++L+DI++I+SG +L+ E ++ Sbjct: 310 LLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLENHNI 369 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 + + V Y K I + L D +++I LN+LSNA+ FTP GG+ Sbjct: 370 VTIIEDITLAVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGK 429 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 I ++ H + + + VRD G+G+ ++ F Q+ S EG+G+GL L KA+ Sbjct: 430 IKVNI-HDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLSLVKAL 488 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810 ++ + G + S KG+ I FP+ Sbjct: 489 IEMHNGTISVESEYGKGSEFIIYFPI 514 Score = 41.6 bits (96), Expect = 0.62, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 46/171 (26%), Gaps = 13/171 (7%) Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352 + E E L + + P+ ++++ + +AN + L + Sbjct: 118 NREKIKVVIVRDITERKRYEKALCESEYLHRKLTELLPVGVSIHNYDMVEFANKTCLNML 177 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-------------LYRSDRTCIAASAR 399 K D+ + ++ +K + R D I Sbjct: 178 GIKDEKDLINNSIFKFIHESKIKDSKERLKTIFEYGGKTLPEFYNKFIRKDGQIIDVETW 237 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 T + + F + Q + ++ + +D K+ E Sbjct: 238 STTFYDENKLKILSVFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTE 288 >gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti 1021] gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium meliloti 1021] Length = 917 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 117/638 (18%), Positives = 224/638 (35%), Gaps = 27/638 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 + + R S + ++ + + + Sbjct: 23 RITDLPISARVAALTAAGLISLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAF 82 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYL 303 + L L+ S+ ++ +E + ++ E Sbjct: 83 GDLRYWLTDLSVSL--LMNSQRNADEARERLQEQLAGLAKHAPEAVEAIRTEVDAYVETA 140 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 G L + L + + + V E Sbjct: 141 LQAADSYTQDNRIVGNALLAKARTHS--GKVDADLNRLVEQVKAEAEAARNEVVVQTEKT 198 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + +L + + + ++L RL+ + + IP E ++ Sbjct: 199 ATTAAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVDIPEEGGDE 254 Query: 424 FPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + E + + + + E + + + LE SDG + + E IL N Sbjct: 255 LGAMARTLSLFRESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYC 314 Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----- 536 ++F + + + F +EQN E++ L Sbjct: 315 EIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEK 371 Query: 537 --KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +RI +K+P DI++ KQ + +L AK AE + KS FLA +SH Sbjct: 372 RFGDKWVRISKRKIPD-GGTVAVYTDITQLKQRQVELERAKSHAESANEAKSRFLASMSH 430 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL AIIG+SE++ + + + + I +G +L ++ND+LD+SKIE+ K Sbjct: 431 ELRTPLNAIIGYSEMLIEEARDHE-DEELVPDLDKIASAGRHLLSLINDILDLSKIEANK 489 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 M + E S+ + + + + V F ++ + +D ++Q N+LSN Sbjct: 490 MEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSN 549 Query: 715 AIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 A FT +GG++ + + ++ +V DTG+GM+ + E+ F Q S Sbjct: 550 AAKFT-NGGRVTLRVRREQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNY 608 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + ++ G + S KG++ + P Sbjct: 609 GGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTMEVP 646 Score = 40.8 bits (94), Expect = 0.94, Method: Composition-based stats. Identities = 17/235 (7%), Positives = 51/235 (21%), Gaps = 3/235 (1%) Query: 90 DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D+ + + + + + + G ++ + + K W + Sbjct: 301 DSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG--KSPQEWVDERV 358 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L + R+ + + +R + Sbjct: 359 RLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDITQLKQRQVELERAKSHAESAN 418 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E K + + + + + D L S + Sbjct: 419 EAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIASAGRHLLSLIND 478 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + + + L + + L RN + F+ Sbjct: 479 ILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFEADLGEMH 533 >gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1] Length = 1370 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 116/615 (18%), Positives = 215/615 (34%), Gaps = 59/615 (9%) Query: 252 DVLKTEKYP---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEY 302 + L TE+ P LL +E + + N ++ ++++ + Sbjct: 431 ERLGTEEIPICKLLKTEMPFTGFRVGMYDENRSRRVYDVLGEAIRDDSTGEFLAGVVTGR 490 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIE 361 ++ + E D P + + L + N F T D + Sbjct: 491 DVTVMTEEITQIKERDEERFKLICDTMPQLVWTATPDGLVDFWNTRFYSYTGLAPEDSLG 550 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + D+ S T + E + ++ Sbjct: 551 KS------WVNAFHPDDLPEAEKRWKHSLETGDSYVTEYRCQSKEGEWRWYLGRAMPQRN 604 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS----- 476 + + G + ++ K M+ QL S++ + I ++ + Sbjct: 605 KETGKVEKWFGTCTDVHESIQTKMAMKRTRQQLLSVIAHSHVTIFTVDPNRRVTMLEGAL 664 Query: 477 -TNRAVSK-------LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EK 527 N + G + + + T L + +L + L E Sbjct: 665 IWNNTHEESHDGTRWFIGEDMYTVFNR-LTAQLADGERPEFLEPIELLLDGKATEDLKEH 723 Query: 528 ITLGSTKEEKLLSL------RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI---- 577 + L++ + + + D++E K + L K Sbjct: 724 GIDDRWYRTRFLTMLGKRAQEGDPRHNTYVEGVIGVIMDVTELKIREKALEKQSKEKRKA 783 Query: 578 ------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 A++ + KS FLA +SHEIRTP+T ++G +E++ G + EY I Sbjct: 784 MANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLM----GMELDQEQQEYVENIQ 839 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S +L ++ND+LD SK+ESG++++ SL V E ++Q K + ++ Sbjct: 840 SSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVG 899 Query: 692 NNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDT 744 + I ++ D V+QI N+L+N+I FT G + S EV V D+ Sbjct: 900 DGIENDLVVIGDPGRVRQILTNLLTNSIKFTNQG-YVRFSVVAEKETSETIEVKFSVEDS 958 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + +K +PF Q S R GTGLGL + K ++D G+ + S GT Sbjct: 959 GIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLESKVGVGTRA 1018 Query: 805 EIIFPLYDTSHPHDC 819 P + P + Sbjct: 1019 TFWVPFNKPNGPAEA 1033 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 17/214 (7%), Positives = 46/214 (21%), Gaps = 8/214 (3%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-D 128 E F + W G + + G +G + + + Sbjct: 506 DEERFKLICDTMP-QLVWTATPDGLVDFWNTRFYSYTGLAPEDSLGKSWVNAFHPDDLPE 564 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187 L+ +++ + EG + A+P + + + FG Sbjct: 565 AEKRWKHSLETGDSYVTEYRCQSKEGE--WRWYLGRAMPQRNKETGKVE--KWFGTCTDV 620 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEY 246 + KR ++ + + + + + Sbjct: 621 HESIQTKMAMKRTRQQLLSVIAHSHVTIFTVDPNRRVTMLEGALIWNNTHEESHDGTRWF 680 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 + L E + ++ Sbjct: 681 IGEDMYTVFNRLTAQLADGERPEFLEPIELLLDG 714 >gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon phaeoclathratiforme BU-1] Length = 608 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 179/393 (45%), Gaps = 29/393 (7%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + ++ + +++ RK++ L ++ + I + + G I Sbjct: 220 LHRKDETGVIARALNVMTDEI------RKLQHREEWLRAVFSGIREAIIVTDATGDITMV 273 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N A S++F +P + + S + + S + E+++L +TK + Sbjct: 274 NPAASRMFRINGSMFKPRPLSHL----SDSKLQELFARVHSTRVTLHKEELSLMTTKGAR 329 Query: 538 LLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + + + K + ++DI++ + + + DF+A VSHE+ Sbjct: 330 IMQISSMPLTKEELFTGTVFVLNDITKLRNLE--------------KIRRDFVASVSHEL 375 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT I G++E + + + + I + + +VND+LD+S+IESG++ Sbjct: 376 RTPLTVITGYTETLLDGAMHEPEHATA--FLQTILLATEQLTALVNDVLDLSRIESGQIE 433 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 F V L V +++ L++ ++K+I + + +P + AD R + + N+L NAI Sbjct: 434 YTFSAVDLKRMVQKSVDLLKPALDKKQIRLDIHIPDGLPTVYADPRYLDIVVRNLLDNAI 493 Query: 717 HFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + G+I I T S++ + L + D G+G+ +L + + F ++ ++ GTG Sbjct: 494 KYVDDQNGKIRI-TAFKSDDHLRLEIEDNGIGIAKSDLGRIFERFYRVDKARSRERGGTG 552 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 LGL + K +V A+ G + S G++ ++ Sbjct: 553 LGLAIVKHIVMAHKGNIDVRSRVNLGSVFTLML 585 >gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1655] Length = 818 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 158 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 216 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 217 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 274 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 275 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 330 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 331 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 388 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 389 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 448 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 449 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 504 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 505 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 564 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 565 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 623 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 624 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 662 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 191 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 250 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 251 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 308 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 309 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 368 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 369 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 413 >gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora] Length = 1333 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 115/643 (17%), Positives = 212/643 (32%), Gaps = 55/643 (8%) Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-----LLTSE 265 K G + + Q P ++ + D + E L+ +E Sbjct: 322 KDGSVILPNKPARRLFNQDPAQGAPLEGSNLLEQWKVWNDDFSRQLETDEHPISVLIKTE 381 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEGE 319 + + +++ + R +S + + Sbjct: 382 MPFETYRIGMLDQGGERLIFDVEGAVIRDEITGEFLAGVITCRDITRIEHEISQIKEADK 441 Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 D P + G + N + T D + GG L + Sbjct: 442 ERFRLICDTMPQLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLG--GGWRKAFHPDDLVET 499 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 L + I R + E + K Q + G + Sbjct: 500 ERRWQSSLRTGEPYVIEYRCR----SKDGEWRWFLGRALPLKNKQTGKIDKWFGTCTDVH 555 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-----------VSKLFGY 487 +T K + + QL S++ + + ++ + + + S G Sbjct: 556 ETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEGSLIWDALSPELSASWFIGK 615 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----I 543 V ++ L L IL L+ G + I Sbjct: 616 DVYEVFN-SLNQQLPDGQTPAFLQPLESILGGKSPVELQDHKFGRWYRTGFQPILRRDPI 674 Query: 544 IIKKLPF-SSCYSLTMHDISEWKQEKN----------KLSHAKKIAEKESSHKSDFLARV 592 + + D++E K + +L + A++ S KS FLA + Sbjct: 675 TGNSIENFVEGVMGFIMDVTELKDRERDIEAQVLEKRQLLANEAAAKEASRLKSQFLANM 734 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+T +IG +E++ + + E I RS N +L ++ND+LD SKIES Sbjct: 735 SHEIRTPITGVIGMAELLLDVGL----DAEQRELTENIFRSANALLTVINDILDFSKIES 790 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIAL 709 G++++ SL + E ++ A K + ++I ++ D ++Q+ Sbjct: 791 GRLDIEEVQFSLAVVIQEVSKMLSFTAERKGLTFNYEICSDIALDLVVMGDPGRLRQVLC 850 Query: 710 NILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 N+ N I F G + + EV ++DTG+G+ L+ +PF Q S Sbjct: 851 NLAQNGIKFCHEGHVKLNVFVEQETNDTIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDAS 910 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + GTGLGL ++K +++ G+ + S +GT P Sbjct: 911 TARKFGGTGLGLTISKNLLELMNGRMALASKRGEGTTATFWIP 953 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 31/333 (9%), Positives = 78/333 (23%), Gaps = 28/333 (8%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI- 127 + F + W G + G +G + Sbjct: 439 ADKERFRLICDTMP-QLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLGGGWRKAFHPDDLV 497 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHV 186 + L+ + + +G + ALP+ ++ + + FG Sbjct: 498 ETERRWQSSLRTGEPYVIEYRCRSKDGE--WRWFLGRALPLKNKQTGKID--KWFGTCTD 553 Query: 187 NRVD-NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--- 242 + + S + + +V+ ++ + S +S Sbjct: 554 VHETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEGSLIWDALSPELSASWFI 613 Query: 243 --------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 + D PL + P + H + F + Sbjct: 614 GKDVYEVFNSLNQQLPDGQTPAFLQPLESILGGKSPVELQDHKFG---RWYRTGFQPILR 670 Query: 295 NSKESFEYLSHRNHP------SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + + + ++ D ++ + ++K + + F Sbjct: 671 RDPITGNSIENFVEGVMGFIMDVTELKDRERDIEAQVLEKRQLLANEAAAKEASRLKSQF 730 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 L ++ I G++ LL L Sbjct: 731 LANMSHEIRTPITGVIGMAELLLDVGLDAEQRE 763 >gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 878 Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 111/640 (17%), Positives = 224/640 (35%), Gaps = 39/640 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTE 245 P L + K + +I + + D + P L + + + Sbjct: 129 AQPMPPELLEEASKLVPVVRDISDQGHFMIRTQMHALDASKNEGVSPDLAAVREQTEVLF 188 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS- 304 A K + + + + + + + + Sbjct: 189 SQATKTAEILQRDIRVRIARAIDNHQTNANRILAMTCGLVVLLLTGMVTLCVRIMLSFAD 248 Query: 305 -HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEI 362 R+ A E ++ P+ + + N + L + E Sbjct: 249 MLRSREKDGAAVVEANAGMERILEALPVGIAILGQDRIIRRVNLAATNLLDIEPGWFFER 308 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + D R R R+ ++ +L + Sbjct: 309 HVPWDMFYENVQSDDPE--------RQPRIEFEHEVRMRALE---GRTLDVIKSSIPVIL 357 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 Q + + + + + +R++ E +L S+L ++G+A+ + G +L N ++ Sbjct: 358 QGETLILEVFM--DVTQRKQAERELLQEKSRLESLLSGINEGVALTDERGGVLEVNESLC 415 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++ G D+L + L + R L + + + L +R Sbjct: 416 RILGAKAHDLLGRKVWDLFPDGILGTQLAQGLRALQENPRTRL-REIQLESFRDMALVVR 474 Query: 543 IIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + +++ +++ ++ AE S KS FLA +SHEIRTP+ Sbjct: 475 MQPVLGEEAFGGMIVSVIEVTAIVDA-------RRRAEAASQAKSMFLANMSHEIRTPMN 527 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +I+G E++ R + I +L I+ND+LD SKIE+G + + E Sbjct: 528 SILGHGELLARTRLDT----EQADCVQGIRVCAESLLVIINDILDFSKIEAGMLRIAPED 583 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 V L ++ +++ A +K + ++ A + D + QI +N++ NAI FT Sbjct: 584 VDLGGLLARVRTMLSEQAQKKGLDLQLVTAGLPQVVSTDAGRLTQILVNLVGNAIKFTEH 643 Query: 722 GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 GG + +S ++ + VRDTG+G++ + F Q S GTGLG Sbjct: 644 GG-VELSVRGEAHAGGKAALCFSVRDTGIGISADRQKGIFVSFEQADGSLTREYGGTGLG 702 Query: 778 LPLAKAMVDANMGK-FYIFSTPAKGTLIEIIFPLYDTSHP 816 L +A ++V G + S +G+ + + S P Sbjct: 703 LTIANSLVRLLGGSGISVKSQTGQGSTFSFTL-VMNVSAP 741 >gi|167840906|ref|ZP_02467590.1| sensory box histidine kinase/response regulator [Burkholderia thailandensis MSMB43] Length = 765 Score = 335 bits (860), Expect = 2e-89, Method: Composition-based stats. Identities = 109/630 (17%), Positives = 201/630 (31%), Gaps = 31/630 (4%) Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 A R + +++ + P L +++ Sbjct: 2 ARFVRRHARNYATVAGFIAIATLLQAALVRAGGADMPLALYFPFIAAAVWATSLAGGIGA 61 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLS 312 L L + + + + F + L +L Sbjct: 62 TAASAVL--IWVMFLSDTLAYPGPLSARIVQLATFVIVNCAICAIVAALKGSRRMNEALR 119 Query: 313 AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + V G + Y NP+ L + Sbjct: 120 RREALARRYYEALLQSLTQGVVVSDRRGVITYMNPAAATLIGC-DATAVRGLPFRGVFRA 178 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + + + + Sbjct: 179 YDGHGARVRATALDRVLRSGASATVDGH--WLMPHDGQRVPIAEVASPLVDAAGGMTGAV 236 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I + R ++ L ++EA+ D I + I S N A ++FGY + Sbjct: 237 LIVRDVSVDRERVAASQM----LRRLVEASPDAIVGVGANRRITSWNPAACRMFGYDEQA 292 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 L + + + H L + L ++ L + + Sbjct: 293 ALGRDVAMLIAPRWLR--RHPLPASVPGVREPIENVDVLCMRQDGSRLRATLSASPVLDD 350 Query: 552 SCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + T+ D ++ + + A++ A+ + K + LA VSHE+RTPL Sbjct: 351 RDACVALSLTLRDTGGQRRRERRAHRSLRGARDARRQADTSNRLKDELLATVSHELRTPL 410 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I G+ EV++N G L + + IDRS + +V D+LD S + +GK+ L Sbjct: 411 NVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLARMVGDILDASSLATGKLRLDAM 466 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PV L V++ + A I + A + + D ++Q+ N+LSNA FTP Sbjct: 467 PVDLVRIVNDVTGALGTAAQADGIELAVECALDTCIVSGDGERLRQMLSNLLSNAFKFTP 526 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG++ +S T + L V DTG G++ L + F + + G GLGL + Sbjct: 527 RGGRVTVSLERT-GSQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASSRRGLGLGLSI 585 Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 + +V+ + GK S +GT + P Sbjct: 586 VRHIVELHGGKVGAASAGKNRGTTFAVTLP 615 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 25/223 (11%), Positives = 50/223 (22%), Gaps = 5/223 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D G + ++ IG A + G+ V L R Sbjct: 144 DRRGVITYMNPAAATLIGCDATAVRGLPFRGVFRAYDGHGARVRATALDRVLRSGASATV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W + VPI A P+ +G IV VD + A + L + Sbjct: 204 DGHWLMPHDGQRVPIAEVASPLVDAAGGMTGA--VLIVRDVSVDRERVAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G + + + + + A + + E Sbjct: 262 SPDAIVGVGANRRITSWNPAACRMFGYDEQAALGRDVAMLIAPRWLRRHPLPASVPGVRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + ++ + ++ Sbjct: 322 PIENVDVLCMRQDGSRLRATLSASPVLDDRDACVALSLTLRDT 364 Score = 57.7 bits (138), Expect = 8e-06, Method: Composition-based stats. Identities = 33/384 (8%), Positives = 85/384 (22%), Gaps = 25/384 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 + A+ + + + G +G + + + + + + Sbjct: 269 VGANRRITSWNPAACRMFGYDEQAALGRDVAMLIAPRWLRRHPLPASVPGVREPIENVDV 328 Query: 149 L-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L +G+ L L+A P+ + R + Sbjct: 329 LCMRQDGSRLRA--TLSASPVLDDRDACVALS--LTLRDTGGQRRRERRAHRSLRGARDA 384 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++ E S + P + +V A + + + Sbjct: 385 RRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGALQQQAIDAIDRSARSLA 444 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------- 316 + ++ + + + + + Sbjct: 445 RMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQADGIELAVECALDTCIVS 504 Query: 317 -EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 +GE L + F F G + S + + G+S Sbjct: 505 GDGERLRQMLSNLLSNAFKFTPRGGRVTV---SLERTGSQAKLTVADTGQGISPEFLPHV 561 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF---IPFEKANQFPENMPQN 431 + + S H ++ + A + A P Sbjct: 562 FEAFRRAEGAPASSRRGLGLGLSIVRHIVELHGGKVGAASAGKNRGTTFAVTLPAGWQPI 621 Query: 432 GIEPEDVD-TRINKRKMEIEVMQL 454 G V R + ++ + + L Sbjct: 622 GALAWAVQMERGARMTLDAQRVLL 645 >gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652] gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium etli CIAT 652] Length = 761 Score = 335 bits (860), Expect = 2e-89, Method: Composition-based stats. Identities = 132/678 (19%), Positives = 256/678 (37%), Gaps = 55/678 (8%) Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + + + + ++ + D A + G S V D F + S Sbjct: 97 DSGDITQAQARLARYLPQDRLDDGAFVLLVQASGKVFAATTAGLSHVGSNVGDFFPEVSA 156 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 R ++ + + + E+ + + Sbjct: 157 --IRRFGDRAGVIETTIGGVPHYAEITLMGNAGGFVVAATSLEEVGRLWREELALNVTLF 214 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANP 346 ++ Y + D E + + + + F+ + Sbjct: 215 AGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFDFENREFFWSR 274 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 S + D G + L+ D+ + + + ++ ++ Sbjct: 275 SMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIAKGHSGQVD-QIFRMRHA 329 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + M + M GI + + ++ +L +E TS+ Sbjct: 330 GGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFV 388 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + ++ ++ N + +G P ++ + + + ++ Sbjct: 389 LWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIV---NAAAARPVIERRIADADGSGYS 445 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------------- 573 + T +E+ L + + DI+ K+ + +L Sbjct: 446 RTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 502 Query: 574 ----------------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 K+ AE + KS+FLA +SHE+RTPL AI+GFSE+++ Sbjct: 503 ASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILGFSEILQ 562 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 NQ FGPLG+ +Y EYA I SG +L++++D+LD+SKIE+G + LH E + L + E+ Sbjct: 563 NQMFGPLGSAKYDEYARDIHDSGKHLLNVISDILDMSKIEAGHLKLHRERIDLVPLIEES 622 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + + A EK ILI ++ + + AD R++KQ+ LN+LSNA+ FT +GG+I + T Sbjct: 623 LRFTAIPAAEKNILIDQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRR 681 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 V + + DTG+G+ L K +PF Q+ + G+GLGL +++++ + G+ Sbjct: 682 VD-GAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGR 740 Query: 792 FYIFSTPAKGTLIEIIFP 809 I S A GT+I + P Sbjct: 741 MKIRSREAVGTVISLRIP 758 Score = 44.6 bits (104), Expect = 0.077, Method: Composition-based stats. Identities = 21/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + +G M + + ++H D I + + ++ Sbjct: 260 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIAKGHSG 318 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I S + GI + D++ Sbjct: 319 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 375 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + + + V + + Sbjct: 376 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIVNAAAARPVIERR 435 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ ++ + ++ + S + L Sbjct: 436 IADADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 495 Query: 323 PETVDKC 329 D Sbjct: 496 ATIGDLS 502 >gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus OF4] gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus OF4] Length = 607 Score = 335 bits (860), Expect = 2e-89, Method: Composition-based stats. Identities = 92/507 (18%), Positives = 194/507 (38%), Gaps = 34/507 (6%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDI-EIA 363 R +L D P+T D+ + + N + + S++DI + Sbjct: 123 RVKRALLGARDAAIERDPQTGDRVQVLAVPIKDQD-----NNTLGAIYIESSMEDIYDQM 177 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKAN 422 ++++L + + +++ + R ++ + + + Sbjct: 178 QQINSILLSGTVIALLITAVLVILLARTITAPIMDMRKQALRMGQGDFSRQVT--VYSTD 235 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + + + R E +L S+L +DG+ +++G I+ N+ Sbjct: 236 EIGQLAYSFNDLTHKLQDATATRA--REQKKLSSVLAHMTDGVLATDQDGHIILMNKRAE 293 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L G ++++ L + + S+ L + ++ Sbjct: 294 ELLGVQSYEVIKSLLPEVLRLPETYELEDLFEQTDSILLDFSDDEQEFLIEAN-----FS 348 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 +I ++ + +HD++E ++ + + +F+A VSHE+RTPLT Sbjct: 349 VIQEEDGPINGLITVLHDVTEQEKIEQD--------------RREFVANVSHELRTPLTT 394 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 + + E +++ + ++ +VNDLL +SKI+S L V Sbjct: 395 MKSYLEALEDGALDE--PELARRFVGVTQNETERMIRLVNDLLQLSKIDSHDYRLQLTWV 452 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + E I ++ A + I + + + D + Q+ NI+SNA+ ++P G Sbjct: 453 DFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVEVDKDKLTQVIDNIISNAMKYSPEG 512 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G I +T V + + D G+G+ K F ++ ++ GTGLGL +AK Sbjct: 513 GNIT-TTLMHQGHNVRVSISDEGMGIPRENQSKIFDRFYRVDKARARSIGGTGLGLAIAK 571 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V A+ G+ ++ S GT I P Sbjct: 572 ELVHAHGGEIWVSSEYGSGTTIYFTLP 598 Score = 40.0 bits (92), Expect = 1.7, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 10/147 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G++ +++ + +G ++++I L +V L + + DL ++ ++ Sbjct: 279 TDQDGHIILMNKRAEELLGVQSYEVIKSLLPEV---LRLPETYELEDLFEQTDS-----I 330 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L I+ I + +G ++H + SH Sbjct: 331 LLDFSDDEQEFLIEANFSVIQEEDGPINGL--ITVLHDVTEQEKIEQDRREFVANVSHEL 388 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235 E + + P R Sbjct: 389 RTPLTTMKSYLEALEDGALDEPELARR 415 >gi|298246973|ref|ZP_06970778.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549632|gb|EFH83498.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 796 Score = 335 bits (860), Expect = 2e-89, Method: Composition-based stats. Identities = 93/640 (14%), Positives = 205/640 (32%), Gaps = 41/640 (6%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKN 238 + ++ F L E + Sbjct: 180 EIAEHQQVTERLQESEQNFRVLSETVPQLVWTMFPNGRRDYVNQRWCDYTGSTRERMQSD 239 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + + + + + L + E E + ++N + E Sbjct: 240 RWAHFQFIHPDDREGNRAFWQHALQTGEPFESEHRLRNGHTGTYRWFLARAMPVRNETGE 299 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353 ++ ++ + E + P + G Y N + T Sbjct: 300 IVKWFGTATDIDEQKRAEQQLKESEENWRVLAETMPQLVWSTGPDGVHEYTNQRWRDYTG 359 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 L+ A+ RL Q Sbjct: 360 LTPEQVQNNRWAHLQLIHPDDREGTRAL--WQHALDTGAMYEHEERLSNGQT--GAYRWF 415 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG- 472 ++ + + G + D + + + + ++ + GI + EG Sbjct: 416 LVRAMSIRDEAGQIVKWFGTCTDIDDQKRMQEALRESQERASVLMNSNIIGIFV--EEGE 473 Query: 473 IILSTNRAVSKLFGYPVEDIL-RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 I+ N ++ GY ED+ + + + E+ + EK + Sbjct: 474 QIVDANDTFLRMTGYTREDLRAGRINWRHMTPPEYLARTQQAHQELATQQSMTPYEKEYV 533 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + I+ + + + D S K+ + + K DF++ Sbjct: 534 CQDGSRLPVLVGGIVFQHHPLQAITFVL-DNSARKELEQR--------------KDDFIS 578 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 SHE+R PLTA+ + + ++ G + ++ N V +V +LLD+SKI Sbjct: 579 MASHELRGPLTALKLQT-TLLRRQLAKQGTQASAPALSSMETQINKVTRLVEELLDVSKI 637 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ++G++ E V LD + E +Q + +++R + + + D + Q+ N Sbjct: 638 QAGRLEYVQETVDLDALLREITETLQQSSPSHTLVVRGTGGTGL---IGDRDRLGQVFTN 694 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++SNAI ++P+ + + + + + V + V D G+G+ + +K + F ++ Q Sbjct: 695 LISNAIKYSPNAETVEMDLSASEDA-VTVCVCDHGLGIPREQRDKIFERFYRVSGPNQKA 753 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G G+GL + +V + G + S KG+ ++ P+ Sbjct: 754 IPGLGMGLYIVAEIVRHHGGSITVESEVGKGSTFQVTLPM 793 Score = 120 bits (301), Expect = 9e-25, Method: Composition-based stats. Identities = 42/406 (10%), Positives = 98/406 (24%), Gaps = 30/406 (7%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILH 126 +SE F + W + +G +++ G+ +M R Sbjct: 193 ESEQNFRVLSETVP-QLVWTMFPNGRRDYVNQRWCDYTGSTRERMQSDRWAHFQFIHPDD 251 Query: 127 IDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185 + N L+ + + T Y A+P+ + E + FG Sbjct: 252 REGNRAFWQHALQTGEPFESEH-RLRNGHTGTYRWFLARAMPVRNETGEIV--KWFGTAT 308 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKN 238 K ++ + L E P N Sbjct: 309 DIDEQKRAEQQLKESEENWRVLAETMPQLVWSTGPDGVHEYTNQRWRDYTGLTPEQVQNN 368 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 + + L + + + L + E+ + ++++ + + Sbjct: 369 RWAHLQLIHPDDREGTRALWQHALDTGAMYEHEERLSNGQTGAYRWFLVRAMSIRDEAGQ 428 Query: 299 SFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 ++ + E + ++ I FV + AN +FL +T Y Sbjct: 429 IVKWFGTCTDIDDQKRMQEALRESQERASVLMNSNIIGIFVEEGEQIVDANDTFLRMTGY 488 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 D AG ++ P + + ++ + + Sbjct: 489 TREDL--RAGRINWRHMTPPEYLARTQQAHQELATQQSMTPYE----------KEYVCQD 536 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 V ++++E S+ Sbjct: 537 GSRLPVLVGGIVFQHHPLQAITFVLDNSARKELEQRKDDFISMASH 582 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 15/177 (8%), Positives = 42/177 (23%), Gaps = 7/177 (3%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + + E + + +++ + E + + G N Sbjct: 163 IVRELASFVTTEIALRIEIAEHQQVTERLQESEQNFRVLSETVPQLVWTMFPNGRRDYVN 222 Query: 479 RAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + G E + + F+ + + L E Sbjct: 223 QRWCDYTGSTRERMQSDRWAHFQFIHPDDREGNRAFWQHALQTGEPFESEHRLRN-GHTG 281 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + T DI E K+ + +L +++ + + Sbjct: 282 TYRWFLARAMPVRNETGEIVKWFGTATDIDEQKRAEQQLKESEENWRVLAETMPQLV 338 >gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65] Length = 737 Score = 335 bits (860), Expect = 2e-89, Method: Composition-based stats. Identities = 100/537 (18%), Positives = 190/537 (35%), Gaps = 28/537 (5%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYS-HGNLFYANPSFLLL 351 + ++ E L+ A + E +++ + ++ + N + +P + + Sbjct: 67 ADKQQIAEALTKAFRSQYLACHATTQTHALEQIERLSHVGYWRWHVSENRVFYSPQWKAM 126 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-------TIQ 404 Y+ + LL ++ T I RL TI Sbjct: 127 LGYEDNEIKSDFSAWENLLHPDDRAEAERQVAYFFSHPHATNI-VEFRLQCKNGQYRTII 185 Query: 405 WNRENSLAMTFIPFEKA-----NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 E +R + ++ I Sbjct: 186 SKGRVESLQADNQTPDIIFGIHFPADELKGSQEDHQRLTTQLNRERTLRARAGEIADI-- 243 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEIL 517 G +N + + N+ + G L + + + + L Sbjct: 244 ----GFWEVNLDTGYIYWNKKTRLIHGVDENYKPDLETAIEFYKAGYSRDTITQAVQTCL 299 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 +E + EK + I D+ + K+ ++L A+ Sbjct: 300 EHGTPYDVELEIVDIHGNEKWVRAIGIKDDSSDELRMFGLFQDVDQRKRAISELEQARHA 359 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHE+RTP+ ++G ++++ G + S + Sbjct: 360 AEEANRAKSVFLASMSHELRTPMNGVLGMLQLME----GSVKQEVNKRRLQIASNSAKNL 415 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L I++D+LD S+IE+GK+ L S+ E +S L + +KR I Sbjct: 416 LTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIEVEKKRSTIHIENLLQHDMY 475 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 D ++Q+ +N++ NA FT GQII+ N ++ L V+DTG+G+ + L + Sbjct: 476 WGDEGRIRQMLINLIGNANKFT-QNGQIIVRAQSGENRDLKLSVQDTGIGIPSDRLGQIF 534 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + F Q +S + G+GLGL + K + + G + S KG+ + PL + Sbjct: 535 ESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQGKGSEFTLHLPLREAE 591 >gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 680 Score = 335 bits (860), Expect = 2e-89, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 169/399 (42%), Gaps = 18/399 (4%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 I+ + ++ + S+ + GI + G TN + G Sbjct: 132 QAIQRQAAQLAAINAELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDAT 191 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + L K + + + + + E + + +R Sbjct: 192 ESLDKRWLESVHPEDQERAIASWSTYIDQGGDYSDEFRFQTVDGSLRWVQVRSSPMLSGN 251 Query: 551 SS--CYSLTMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + T+ DI+ KQ + + A++ AE + K +FLA +SHE+RTPLT+ Sbjct: 252 GELLGHVGTLEDITARKQSEEIRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTS 311 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G+S++++ ++ R I+R+ N + ++ D+LD+S+I G++ L+ PV Sbjct: 312 MLGWSKILRAKKLDEKATARA---LEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPV 368 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 +L V A+ V+ A+ K + I T+ + + D ++QI N+L+NAI FTP Sbjct: 369 NLTTVVEAALEAVRPLADTKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKE 428 Query: 723 GQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 G++ I S ++V DTG+G+ L K + F Q ++ G GL Sbjct: 429 GKVEIRLEGISGGLSDDLTHAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGL 488 Query: 777 GLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 GL + + +V+ + G S KG + FPL + Sbjct: 489 GLAIVRHLVELHKGTILAESPGVGKGATFTVRFPLIQEN 527 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 24/263 (9%), Positives = 71/263 (26%), Gaps = 9/263 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144 + D G K + G A + + R + + + + + Sbjct: 166 IFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHPEDQERAIASWSTYIDQGGDYS 225 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + ++G+ + + + P+ S N E G G + + ++ ++ Sbjct: 226 DEFRFQTVDGSLR--WVQVRSSPMLSGNGELLGH--VGTLEDITARKQSEEIRAQVIREQ 281 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + E + + ++ + + P + + K E + Sbjct: 282 TARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKATARALEAIERNAN 341 Query: 265 EESSLPEQ--EDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + L E + I T+ + E+ L+ +++ D + Sbjct: 342 SQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEAALEAVRPLADTKSMTINTALDYTLS 401 Query: 321 LTPETVDKCPIPFFVYSHGNLFY 343 + + + + Sbjct: 402 PVSGDSARLQQIVWNLLTNAIKF 424 >gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6] gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6] Length = 1149 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 177/384 (46%), Gaps = 20/384 (5%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 ++ E + + + ++ SILE+ +D ++ E + N ++L G P Sbjct: 367 EALQSELNERMRVEEALRQSSARVTSILESIADAFFAVDMEWKFVYVNDEAARLLGQPTT 426 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 ++ + + T+ + E + L + I Sbjct: 427 SLIGQSIWDSAADRVGLLYAELYTQAMESLKPIRDEVYFAPLD-----VWLAMRIYPWSD 481 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 ++ + D++ + L AK+ AE + +S+FLA +SHEIRTP+ +IG + ++ Sbjct: 482 --GLAIYIQDVTAAHAAQAALIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLL 539 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + N R EYA I SG +L I+ND+LD+SKIESG+M L +P + E V Sbjct: 540 LDTPL----NERQREYAETIRSSGESLLTIINDILDLSKIESGRMELEQQPFEIQECVES 595 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST 729 A+ LV A K + + A ++P +L D+ ++QI +N+L NA+ FT G ++ + Sbjct: 596 ALDLVAPTAFAKGLDLAYLIAADVPMMLISDVTRLRQILVNLLGNAVKFTEHG-EVTLQV 654 Query: 730 TH-------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + +++ VRDTG+G+ +L++ + F Q+ S GTGLGL + K Sbjct: 655 SRYPDFDLEADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICK 714 Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806 + + G + S P +G+ + Sbjct: 715 RLSEMLGGGISVESAPGQGSTFRV 738 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 23/243 (9%), Positives = 65/243 (26%), Gaps = 24/243 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYG 145 + +D +++E + +G +IG + D +D + + ++ Sbjct: 402 FAVDMEWKFVYVNDEAARLLGQPTTSLIGQSIWDSAADRVGLLYAELYTQAMESLKPIRD 461 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204 + P++ V + + P G I + + +A + Sbjct: 462 EVYFAPLD-----VWLAMRIYPWSD---------GLAIYIQDVTAAHAAQAALIEAKEAA 507 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-T 263 H + + + P + L + ++ E Sbjct: 508 EHATRARSEFLANMSHEIR-------TPMNGVIGMTGLLLDTPLNERQREYAETIRSSGE 560 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S + + + D I + +Q +Q + + + ++ P Sbjct: 561 SLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADVP 620 Query: 324 ETV 326 + Sbjct: 621 MML 623 >gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium papyrosolvens DSM 2782] Length = 607 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 172/372 (46%), Gaps = 24/372 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ E ++ +IL +DG+ + +G+ + N A +KL G V + K F Sbjct: 257 SELKKTLSEISSEKNKVETILNYMADGVIAFDLKGMAIHANPAATKLLGSDVVNSPFKEF 316 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 V + + Y E + L + + ++ K P + Sbjct: 317 AVKVGLDVRIEDIVYFEESPVRESDTILNDMYVKV-----YFAVFTDTNKKPE--GIIVV 369 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HD +E ++ S + +F+A VSHE+RTP+T+I ++E + Sbjct: 370 LHDDTEQQKL--------------DSMRREFVANVSHELRTPITSIKSYTETLLEGAM-- 413 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + ID + + +V DLL +S++++ +MN E VSLD V + +Q+ Sbjct: 414 EDQETSKRFLCVIDSEADRMTRLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQI 473 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 A K + + +IP I AD ++Q+ +N++SN+I +T G+I + N+ + Sbjct: 474 EAQRKHQKLDSYVIGDIPAISADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYND-I 532 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++V DTG+G+ + L + + F ++ ++ GTGLGL +AK +V A+ G I S Sbjct: 533 YVKVTDTGIGIPSESLPRVFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSE 592 Query: 798 PAKGTLIEIIFP 809 KGT + + P Sbjct: 593 IGKGTEVTVKLP 604 >gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 642 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 102/466 (21%), Positives = 189/466 (40%), Gaps = 15/466 (3%) Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + +L L D+ + ++ + + Sbjct: 47 AFLQDHAVDAILLDLGLPDSTGLGTFYALQARHHDLPVIVMTGLNDQEVAVRVLRAGGQD 106 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + ++ + ++ + + +++E D IA +R +L N Sbjct: 107 YLVKGQIDIHLLARSIRYAIERKRLEQALYRREQESKALVEHAPDIIARFDRAHRLLYVN 166 Query: 479 RAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 V G D++ KP F + + L + + Q LE + Sbjct: 167 PVVEAATGVAPADLIGKPLASFGVVEADRPKAEETLRHVFATGEDQVLEGRIGNRGGDRT 226 Query: 538 L-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + DI++ K +N+ A++ AE+ + KS+FLA +SHEI Sbjct: 227 YEIRFAAEMGADGRVETVLAVARDIAKRKALENEARQAREEAEQANRAKSEFLANMSHEI 286 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ I+G + + + P EY + D+S +L IVND+LD+SK+E+GK+ Sbjct: 287 RTPMNGIMGMIHLARLKSVDPA----ISEYLDLADKSALHLLGIVNDVLDLSKLEAGKIR 342 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L + SL + V + ++ A +K + + + A ++P I+ D ++Q+ N++ NA Sbjct: 343 LFRKRFSLRKEVEAVVEPFRVAAGKKDLGLAHTVAPDLPDSIVGDAGRLRQVLTNLVGNA 402 Query: 716 IHFTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 + FTPSG +I + V DTG+G+ + F Q S Q Sbjct: 403 LKFTPSG-RIDLRVERAGESAAGGPQLFRFTVTDTGIGIPAVRFAHIFESFEQAHTSAQA 461 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL +++ +V+ G+ + ST +G++ PL D +H Sbjct: 462 LFGGTGLGLTISRQLVELMGGEITVASTEGEGSVFSFTLPL-DVAH 506 Score = 45.0 bits (105), Expect = 0.047, Method: Composition-based stats. Identities = 9/140 (6%), Positives = 28/140 (20%), Gaps = 7/140 (5%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145 D L ++ + G +IG L + P + + Sbjct: 155 RFDRAHRLLYVNPVVEAATGVAPADLIGKPLASFGVVEADRPKAEETLRHVFATGE---D 211 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + I ++ + + ++ ++ Sbjct: 212 QVLEGRIGNRGGDRTYEIRFAAEMGADGRVETV--LAVARDIAKRKALENEARQAREEAE 269 Query: 206 HLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 270 QANRAKSEFLANMSHEIRTP 289 >gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1055 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 105/571 (18%), Positives = 205/571 (35%), Gaps = 47/571 (8%) Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 ++ + + + + ++ E + A E Sbjct: 351 VRIVETAQRLGGGDLTARSGLTGGRGTLGRLAQAMDRMAQNLEEDRAELVAARDALAREA 410 Query: 319 ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE------IAGGLSTLLD 371 +D + S + AN F + Y+ + A + Sbjct: 411 LRR-QTLMDSSDDGIVVIDSEHRIVEANRRFAEMLGYEQDAVVGMLTWDYEADWDEAAIR 469 Query: 372 APKLSDNNAIK--PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + R D + ++ + E Sbjct: 470 SSFNNPLAVRTVFESHHRRKDGSVFPVEVSVNGVAIQGE-------------------FY 510 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYP 488 + + + + ++ + + ++ E + D IA+I + N A KLFG Sbjct: 511 FVSVARDITERKAVEQALRDSEERYRALFENSLDAIALIEGAPLRLQWVNPAFCKLFGLS 570 Query: 489 VED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 ED + + + ++ L + L L E + + + + Sbjct: 571 AEDAYALSAEELWSLAHPDDRRLLRPRLEDRLRQGLDLGREC-YRIVCGDGRTRWVEMTG 629 Query: 546 KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 ++L S + HDI+E ++ L+ AK AE S KS+FLA +SHEIRTP+ I Sbjct: 630 RRLGGESASTHMTIYHDITEEQERAALLAAAKDQAEAASRAKSEFLANMSHEIRTPINGI 689 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + +++ + A + + +++D+LDIS++E+GKM + P Sbjct: 690 VTILQLMVASGL----TEEQADQARMALAASRRLTRLLSDILDISRVEAGKMAIVQAPFH 745 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 L A+ E L+ + + S + +P ++ D+ +QI N+L NA+ FT SG Sbjct: 746 LRRAMMEVRELLLPAGDPPGVTCTVSIDDAVPEIVIGDVTRFQQILTNLLGNALKFTASG 805 Query: 723 GQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 + ++ + +V+ V D+GVG+ +L+ PF Q+ + +G GLG Sbjct: 806 -TVSVTAVAQPDASAGHPQVLFSVADSGVGIPKDKLDSLFAPFTQVDQGYRRDYQGAGLG 864 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + K +V G I S P +G ++ Sbjct: 865 LAICKRLVGLMGGSIGIESEPGQGVVVHFNL 895 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 36/364 (9%), Positives = 86/364 (23%), Gaps = 44/364 (12%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-------LCDVSDILHIDPNNHIGDLLKRQN 141 ID+ + E + + +G ++GM + + + + + + Sbjct: 427 IDSEHRIVEANRRFAEMLGYEQDAVVGMLTWDYEADWDEAAIRSSFNNPLAVRTVFESH- 485 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 +G+ V + + + I F + + + Sbjct: 486 -------HRRKDGSVFPVEVSVNGVAIQGE------FYFVSVARDITERKAVEQALRDSE 532 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-------HLRMKNKVSSLTEYYAHKDDVL 254 +++ L E ++ + +P + AH DD Sbjct: 533 ERYRALFENSLDAIALIEGAPLRLQWVNPAFCKLFGLSAEDAYALSAEELWSLAHPDDRR 592 Query: 255 KTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + +E + + + + L S + + H Sbjct: 593 LLRPRLEDRLRQGLDLGRECYRIVCGDGRTRWVEMTGRRLGGESASTHMTIYHDITEEQE 652 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 A FL ++ I + L+ A Sbjct: 653 RAALLAAAKDQAEAAS--------------RAKSEFLANMSHEIRTPINGIVTILQLMVA 698 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 L++ A + M + R + + I +A+ PF E Sbjct: 699 SGLTEEQADQARMALAASRRLTRLLSDILDISRVEAGKMAIVQAPFHLRRAMMEVRELLL 758 Query: 433 IEPE 436 + Sbjct: 759 PAGD 762 >gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002] Length = 942 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 109/643 (16%), Positives = 223/643 (34%), Gaps = 28/643 (4%) Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + + AL D + E + + + + Sbjct: 63 TLTIERLALQLSSDDTVEAVRETHRQVLEQLASFDGLVDRLASATTSEDPGVDPLTLYRS 122 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 + + + + + + +S ++ + + + S Sbjct: 123 SQRFRNIVNIEAQVRETALASRGASASVQPAGVSLASLDADLRGAADALAAAAHRQSDDL 182 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + T V A + Sbjct: 183 TNEYREAVQDLAARADRTRKWVAGGVAVSLLLTWLIAREFLGRHVVARLRRVSHFLRHGD 242 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + + + + R+ + R + L + Sbjct: 243 AGNTQAGVPVHGGDEIADMARAVEQFLE-DRRQRRQAEDALKELNAELEARVAQRTAELS 301 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG 486 G E + + + + L SI+E D + + E + N+A +L G Sbjct: 302 TALAGQAGEIAERQHAEDALRESENFLNSIIENIPDMVFVKEAETFHYVRFNKAAEQLLG 361 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIII 545 Y E++L + + + +L + + + + +L+ +++I I Sbjct: 362 YRREELLGRSVHDLFPVDEANFFALKDRAVLESRRMIDIPEEPVHTRHGLRLVHTMKIPI 421 Query: 546 KKLPFSSCYS-LTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKS 586 + + DI+E KQ + +L ++ A+ + KS Sbjct: 422 VDMRGEPRFLLGISRDITEQKQAEAELRRYREHLEDMIRERTAELAVAKERADAANQAKS 481 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +FLA +SHE+RTPL I+G+++++K + ++ I RSG +L +++D+LD Sbjct: 482 EFLAHMSHELRTPLNGILGYAQILKRD---TTLDQHQLDGLTVIQRSGEHLLTLIDDILD 538 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 I+KIE+G+M L+ V L++ VS +++ A EK + ++P + D ++ Sbjct: 539 IAKIEAGRMELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDLPACVRVDEIRLR 598 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q LN+LSNAI FT G + + + VRDTG+G+ LE+ PF Q+ + Sbjct: 599 QALLNLLSNAIRFTEKGS-VRLRVAFLPPARLCFEVRDTGIGIDQGRLEEIFSPFEQVSD 657 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + GTGLGL +++ +V G+ ++ S G+ + Sbjct: 658 DRHR-FGGTGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 3/162 (1%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 ++ + +G +++G + D+ + + + P+ Sbjct: 349 YVRFNKAAEQLLGYRREELLGRSVHDLFPVDEANFFALKDRAVLESRRMIDIPEE-PVHT 407 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + + +PI E G I A +R + + + Sbjct: 408 RHGLRLVHTMKIPIVDMRGEPRFLLG--ISRDITEQKQAEAELRRYREHLEDMIRERTAE 465 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 +V KE+ D +Q M +++ + +LK Sbjct: 466 LAVAKERADAANQAKSEFLAHMSHELRTPLNGILGYAQILKR 507 >gi|289433261|ref|YP_003463134.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946981|gb|ADC74678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1402 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 115/737 (15%), Positives = 248/737 (33%), Gaps = 45/737 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + E + K G +++ + D+ L+ + L + ++ Sbjct: 549 GKILEANVAATKAYGYSRKQLLNKTIYDIR-PLNTQTSIPQQIALADSDGILFESYHHHK 607 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G+ V + + + R ++ K + K + Sbjct: 608 NGSIFPVEVSSRGATV-NNTRLI-----VSVIRDITERRKSEDAFKAIYKHQETILATVP 661 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + E + + YY + + P+ +E++L + Sbjct: 662 DIIAEVDENRVYTWINESGREFFGDDVIGKEASYYFEGEQDTYHKIAPVFNGDENTLYIE 721 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDK 328 + + + L++ + ++ LS + + +E T D Sbjct: 722 SWQRRKDGEKRLLGWWSHALKDITGKTVGALSVASDITDRKLMEENLVHSAKEWSITFDS 781 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G + N +F + I G S +I P L Sbjct: 782 INDMICIVDAGYVIQRVNNAFANSLNLSPAEII----GRHCYELVHATSKPYSICPHKLT 837 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + + + + I + + ++ + Sbjct: 838 LETGLTQTSEYFEENL------GIWVEATTSPIFDASHRVTGSVHIIKDISSRKKSEESL 891 Query: 448 EIEVMQLCSILEATSDGIAI-----INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501 + E S+ + SD I + +N L N K+ GY E++L Sbjct: 892 KAERETYLSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITT 951 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + + L+ + + E+I + T + + LR + DI Sbjct: 952 QIVDDLPLFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDI 1011 Query: 562 SEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 SE K+ + + ++ A+ + + A ++HEI PLT +IGF+E++ N+ P Sbjct: 1012 SELKKAETERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPAD 1071 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I+ V++IV LL ++ + V++ + + +++L Sbjct: 1072 ---IQDSIKIINNGSLRVVEIVKRLLTFAR----QTRPIVSKVNITDVIDNSLALRSYVL 1124 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSNEE 736 I I +A N+P I D ++Q+ LN++ NA + G + + T + + Sbjct: 1125 ETAGISIIRDYAPNLPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTK-KAGKY 1183 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ +D G G+ ++K +PF + G+GTGLGL L++ ++ + GK + + Sbjct: 1184 ILISFKDDGAGIPPDVMDKIFQPFFTTKDP----GQGTGLGLSLSQGIILEHGGKIWAEN 1239 Query: 797 TPAKGTLIEIIFPLYDT 813 P G I P+ T Sbjct: 1240 NPDGGATFMIELPITTT 1256 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 63/538 (11%), Positives = 145/538 (26%), Gaps = 41/538 (7%) Query: 58 NQESVSNTNYLDSENTFVFDPIPRT----VRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 N + S+T + + N + +D + + G A Sbjct: 23 NTQIKSDTQGMPAPNLANLSKGELPYSEQADIFFEMDQDLNYIYWDKASEELTGIPAKDA 82 Query: 114 IGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG + + D LK + + + I +++A P Sbjct: 83 IGKSIYTLFPKTKGSDIEKAYLKALKTKLP-QHFPSKYQIG--KQQHYFEISAYP----- 134 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 SG F + + ++ D +S L E + +++ I++ Sbjct: 135 -TASGLSVFA--KDITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTE 191 Query: 233 HL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 ++ + + +P Q + + ++ Sbjct: 192 LSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEKIPNQYEIDIVAKDKRKIPVEIN 251 Query: 291 TLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345 K ++ N+ E E +D + + Y N Sbjct: 252 ASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLN 311 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + + ++ L + ++ L IA I Sbjct: 312 KAAVQQSRLTKESLFSHTMM--ELYPGIENTE----LFTNLRLCMEKRIAIKTENQFIFP 365 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + P + + +I + ++ I + + + GI Sbjct: 366 DLTEGWFELSM-------EPVPEGIFILSLDITQRKITENQLRISEERFHRVFDQVPIGI 418 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 AI N + + N+ + K+ GY ++ F + + L +L+ Sbjct: 419 AIANLDFKFIQVNKTMCKMMGYSEKEFASITFKDLTPAEFLAYDMYQLK-LLNKGAIDHF 477 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAE 579 E+ K+ + + + + L + DI++ KQ + L K IA+ Sbjct: 478 ERDKQYRHKDGSVFWGHLFVGTIKDDEGKILYYTPCIIDITKRKQAEESLQKYKLIAD 535 Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 81/277 (29%), Gaps = 12/277 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + + L V+K + L YANP L+ + S+++I Sbjct: 145 DITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTELSGF-SLEEITGK 203 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + +P+ + R I + + ++ + Sbjct: 204 PMVD--FVSPEYRGLVLDR--YQRRLAGEKIPNQYEIDIVAKDKRKIPVEINASHIEYKN 259 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 P NM I + + ++ + K+ + L+ +G II + N+A + Sbjct: 260 KPANM---AIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLNKAAVQ 316 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 E + + + L + + E + E L + Sbjct: 317 QSRLTKESLFSHTMMELYPGIENTELFTNLRLCMEKRIAIKTENQFIFPDLTEGWFELSM 376 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + DI++ K +N+L +++ + Sbjct: 377 EPVP----EGIFILSLDITQRKITENQLRISEERFHR 409 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 92/258 (35%), Gaps = 18/258 (6%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + LT + D I + TL K SD L + ++ Sbjct: 65 IYWDKASEELTGIPAKDAIGK--SIYTLFPKTKGSDIEKAYLKALKTKLPQHFPSKYQI- 121 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + A+ + +++ + + + +++E + Sbjct: 122 -----GKQQHYFEISAYPTASGLS------VFAKDITESKETQETLRQSDILYSTLVEKS 170 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +DGI II E ++ N +++L G+ +E+I KP F+ ++ L+ + Sbjct: 171 NDGIIIIQDEL-LIYANPKMTELSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEK 229 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + K+++ + + I + +HD++ +K + KL+ +++ Sbjct: 230 I-PNQYEIDIVAKDKRKIPVEINASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYR 288 Query: 580 KESSHKSDFLARVSHEIR 597 + + + ++ R Sbjct: 289 GALDNMLEGCQIIGYDWR 306 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/298 (9%), Positives = 75/298 (25%), Gaps = 26/298 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD----ILHIDPNNHIGDLLKRQNTWY 144 +DA ++ ++ ++ ++IG ++ I P+ L+ T Sbjct: 789 VDAGYVIQRVNNAFANSLNLSPAEIIGRHCYELVHATSKPYSICPHKL---TLETGLTQT 845 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + NL + ++ PI+ + +G I+ K + + Sbjct: 846 SEYF-----EENLGIWVEATTSPIFDASHRVTG--SVHIIKDISSRKKSEESLKAERETY 898 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLT 263 L V + S + + + E + + + T+ L Sbjct: 899 LSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITTQIVDDLP 958 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-------FEYLSHRNHPSLSAYFD 316 E + + + + + + + L+ S + Sbjct: 959 LFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDISELKKAE 1018 Query: 317 EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E D + G N + + + + L + Sbjct: 1019 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGF--AELLANRPDLPADIQD 1074 >gi|73749300|ref|YP_308539.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661016|emb|CAI83623.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1434 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 115/737 (15%), Positives = 248/737 (33%), Gaps = 45/737 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 G + E + K G +++ + D+ L+ + L + ++ Sbjct: 581 GKILEANVAATKAYGYSRKQLLNKTIYDIR-PLNTQTSIPQQIALADSDGILFESYHHHK 639 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G+ V + + + R ++ K + K + Sbjct: 640 NGSIFPVEVSSRGATV-NNTRLI-----VSVIRDITERRKSEDAFKAIYKHQETILATVP 693 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + E + + YY + + P+ +E++L + Sbjct: 694 DIIAEVDENRVYTWINESGREFFGDDVIGKEASYYFEGEQDTYHKIAPVFNGDENTLYIE 753 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDK 328 + + + L++ + ++ LS + + +E T D Sbjct: 754 SWQRRKDGEKRLLGWWSHALKDITGKTVGALSVASDITDRKLMEENLVHSAKEWSITFDS 813 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G + N +F + I G S +I P L Sbjct: 814 INDMICIVDAGYVIQRVNNAFANSLNLSPAEII----GRHCYELVHATSKPYSICPHKLT 869 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + + + + I + + ++ + Sbjct: 870 LETGLTQTSEYFEENL------GIWVEATTSPIFDASHRVTGSVHIIKDISSRKKSEESL 923 Query: 448 EIEVMQLCSILEATSDGIAI-----INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501 + E S+ + SD I + +N L N K+ GY E++L Sbjct: 924 KAERETYLSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITT 983 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + + L+ + + E+I + T + + LR + DI Sbjct: 984 QIVDDLPLFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDI 1043 Query: 562 SEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 SE K+ + + ++ A+ + + A ++HEI PLT +IGF+E++ N+ P Sbjct: 1044 SELKKAETERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPAD 1103 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I+ V++IV LL ++ + V++ + + +++L Sbjct: 1104 ---IQDSIKIINNGSLRVVEIVKRLLTFAR----QTRPIVSKVNITDVIDNSLALRSYVL 1156 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSNEE 736 I I +A N+P I D ++Q+ LN++ NA + G + + T + + Sbjct: 1157 ETAGISIIRDYAPNLPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTK-KAGKY 1215 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 +++ +D G G+ ++K +PF + G+GTGLGL L++ ++ + GK + + Sbjct: 1216 ILISFKDDGAGIPPDVMDKIFQPFFTTKDP----GQGTGLGLSLSQGIILEHGGKIWAEN 1271 Query: 797 TPAKGTLIEIIFPLYDT 813 P G I P+ T Sbjct: 1272 NPDGGATFMIELPITTT 1288 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 63/538 (11%), Positives = 145/538 (26%), Gaps = 41/538 (7%) Query: 58 NQESVSNTNYLDSENTFVFDPIPRT----VRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 N + S+T + + N + +D + + G A Sbjct: 55 NTQIKSDTQGMPAPNLANLSKGELPYSEQADIFFEMDQDLNYIYWDKASEELTGIPAKDA 114 Query: 114 IGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 IG + + D LK + + + I +++A P Sbjct: 115 IGKSIYTLFPKTKGSDIEKAYLKALKTKLP-QHFPSKYQIG--KQQHYFEISAYP----- 166 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 SG F + + ++ D +S L E + +++ I++ Sbjct: 167 -TASGLSVFA--KDITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTE 223 Query: 233 HL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 ++ + + +P Q + + ++ Sbjct: 224 LSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEKIPNQYEIDIVAKDKRKIPVEIN 283 Query: 291 TLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345 K ++ N+ E E +D + + Y N Sbjct: 284 ASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLN 343 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 + + ++ L + ++ L IA I Sbjct: 344 KAAVQQSRLTKESLFSHTMM--ELYPGIENTE----LFTNLRLCMEKRIAIKTENQFIFP 397 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465 + + P + + +I + ++ I + + + GI Sbjct: 398 DLTEGWFELSM-------EPVPEGIFILSLDITQRKITENQLRISEERFHRVFDQVPIGI 450 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 AI N + + N+ + K+ GY ++ F + + L +L+ Sbjct: 451 AIANLDFKFIQVNKTMCKMMGYSEKEFASITFKDLTPAEFLAYDMYQLK-LLNKGAIDHF 509 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAE 579 E+ K+ + + + + L + DI++ KQ + L K IA+ Sbjct: 510 ERDKQYRHKDGSVFWGHLFVGTIKDDEGKILYYTPCIIDITKRKQAEESLQKYKLIAD 567 Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 35/277 (12%), Positives = 81/277 (29%), Gaps = 12/277 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + + L V+K + L YANP L+ + S+++I Sbjct: 177 DITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTELSGF-SLEEITGK 235 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + +P+ + R I + + ++ + Sbjct: 236 PMVD--FVSPEYRGLVLDR--YQRRLAGEKIPNQYEIDIVAKDKRKIPVEINASHIEYKN 291 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 P NM I + + ++ + K+ + L+ +G II + N+A + Sbjct: 292 KPANM---AIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLNKAAVQ 348 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 E + + + L + + E + E L + Sbjct: 349 QSRLTKESLFSHTMMELYPGIENTELFTNLRLCMEKRIAIKTENQFIFPDLTEGWFELSM 408 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + DI++ K +N+L +++ + Sbjct: 409 EPVP----EGIFILSLDITQRKITENQLRISEERFHR 441 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 92/258 (35%), Gaps = 18/258 (6%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 Y + + LT + D I + TL K SD L + ++ Sbjct: 97 IYWDKASEELTGIPAKDAIGK--SIYTLFPKTKGSDIEKAYLKALKTKLPQHFPSKYQI- 153 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + A+ + +++ + + + +++E + Sbjct: 154 -----GKQQHYFEISAYPTASGLS------VFAKDITESKETQETLRQSDILYSTLVEKS 202 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 +DGI II E ++ N +++L G+ +E+I KP F+ ++ L+ + Sbjct: 203 NDGIIIIQDEL-LIYANPKMTELSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEK 261 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 + K+++ + + I + +HD++ +K + KL+ +++ Sbjct: 262 I-PNQYEIDIVAKDKRKIPVEINASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYR 320 Query: 580 KESSHKSDFLARVSHEIR 597 + + + ++ R Sbjct: 321 GALDNMLEGCQIIGYDWR 338 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/298 (9%), Positives = 75/298 (25%), Gaps = 26/298 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD----ILHIDPNNHIGDLLKRQNTWY 144 +DA ++ ++ ++ ++IG ++ I P+ L+ T Sbjct: 821 VDAGYVIQRVNNAFANSLNLSPAEIIGRHCYELVHATSKPYSICPHKL---TLETGLTQT 877 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + NL + ++ PI+ + +G I+ K + + Sbjct: 878 SEYF-----EENLGIWVEATTSPIFDASHRVTG--SVHIIKDISSRKKSEESLKAERETY 930 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLT 263 L V + S + + + E + + + T+ L Sbjct: 931 LSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITTQIVDDLP 990 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-------FEYLSHRNHPSLSAYFD 316 E + + + + + + + L+ S + Sbjct: 991 LFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDISELKKAE 1050 Query: 317 EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E D + G N + + + + L + Sbjct: 1051 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGF--AELLANRPDLPADIQD 1106 >gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 565 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 83/366 (22%), Positives = 162/366 (44%), Gaps = 44/366 (12%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++E E +L IL+ SDG+ IN + I+ N + +K VE+ + K Sbjct: 239 SELEFEKQKLERILQNMSDGVVAINSKNEIIHINESANKFLNGRVEEFINKM-------- 290 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISE 563 + T ++ L + + +HDI++ Sbjct: 291 ---------------GKESGSDTEVTIYTTDDLTLEVSKATFIDSYMNRGLIFIIHDITQ 335 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + S + F+A VSHE+RTP+T I +SE + + Sbjct: 336 QAKL--------------DSMRKQFVANVSHELRTPITTIKTYSETLLD----VDNEETK 377 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ + I + + + +V+DLL +S+++SG+ L+ E V+L E V ++++A +K Sbjct: 378 KQFLSVIIKECDRMTRLVSDLLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKN 437 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + S +I + D ++Q+ +N++SNA+ + GGQI + + ++ + V+D Sbjct: 438 QTLSCSILQDIVA-MVDRDKIEQVLINLISNAVTYVQEGGQINVVLQKEED-KIKIIVKD 495 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ +L + + F ++ ++ G+GLGL +A +V A+ GK + S GT Sbjct: 496 NGPGIPEEDLPRIFERFYRVDKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTT 555 Query: 804 IEIIFP 809 ++ P Sbjct: 556 FTVVLP 561 >gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102] gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102] Length = 1373 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 111/605 (18%), Positives = 209/605 (34%), Gaps = 64/605 (10%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAY 314 LL +E + H + + ++ + ++ Sbjct: 439 LLQTETPFASMRVGMHNKAGEKLQFDVLGEAITDDITGEFLAGVVTFRDVTSMAQEITDI 498 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E D P + + G + N + T + A P Sbjct: 499 KEREEERFKLICDTMPQLVWTATAEGMPDFFNTRWYTYTGLTPETSLGAA------WQTP 552 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D+ RS T + + + + +K + G Sbjct: 553 FHPDDLMETTARWKRSIATGEPYVTQYRCRSKDGDWRWMLGRALPQKNRETGAIEKWFGT 612 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------- 485 + ++ + QL S+L I ++R+ + A+ Sbjct: 613 CTDVHESIEATLAAKRTRQQLLSVLAHAHVTIFTVDRDHKLTMLEGALIWDLNDGDPTRD 672 Query: 486 -----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 G + D+ + L + IL R+ +E+ + + + Sbjct: 673 SSWYIGEDMYDVFNR-LNTQLAPGEEPKFLRPIEGILDGKQRELVEEHGI----DGRWYR 727 Query: 541 LRIIIKKLPFSSCY-----------SLTMHDISEWKQEKNKLSHAKKIAEKE-------- 581 R + ++ + D++E K+++ L K ++ Sbjct: 728 TRFLPVPGKRTNGANGSLEACVEGAIGVVMDVTELKEKQTNLEEEFKEKKQAMANAAAAK 787 Query: 582 --SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + KS FLA +SHEIRTP+T +IG +E++++ + + EY I RS N +L Sbjct: 788 EANRLKSQFLANMSHEIRTPITGVIGMAELLQDMKL----DSEQREYVENIQRSANALLT 843 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--- 696 ++ND+LD SK+ESG++++ SL + + ++ A K + + + I Sbjct: 844 VINDILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMV 903 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752 ++ D V+QI N+L+N+I FT G + S + + DTG+G+ Sbjct: 904 VIGDPGRVRQIVTNLLTNSIKFTNQG-HVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEV 962 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 +K +PF Q S R GTGLGL + K +++ GK + S GT P Sbjct: 963 RKKLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIPFSK 1022 Query: 813 TSHPH 817 P Sbjct: 1023 PQGPQ 1027 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 7/139 (5%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W A G + G +G + + + Sbjct: 516 LVWTATAEGMPDFFNTRWYTYTGLTPETSLGAAWQTPFHPDDLMETTARWKRSIATGEPY 575 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVD-NDPRALGKRLD 201 + +G + + ALP +R + FG A + Sbjct: 576 VTQYRCRSKDGD--WRWMLGRALPQKNRETGAIE--KWFGTCTDVHESIEATLAAKRTRQ 631 Query: 202 KKFSHLHEIKKGHSSVEKE 220 + S L +V+++ Sbjct: 632 QLLSVLAHAHVTIFTVDRD 650 >gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235] gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235] Length = 1323 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 119/721 (16%), Positives = 253/721 (35%), Gaps = 49/721 (6%) Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + + + + + EG +V + + R FG+ D Sbjct: 216 VERTTRTGEPFDDELQIRTQEGRLKWVR-TIGQAEMVDSQ----CVRVFGVFQDIDDDRR 270 Query: 193 PRALGKRLDKKFSHLHE--IKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYA 248 R +R L + + + + + V Sbjct: 271 MREQSERNSALLRSLVDSVTEFSVIATDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIF 330 Query: 249 HKDDVLKTEKYPLL----------------TSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 H + ++ L + E + + + + + + Sbjct: 331 HMESEVEARSVELSKELGEDVSGFQTFVAKSLREGAEQREWTYIRKDGERIPVILVVTPM 390 Query: 293 QNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347 + ++ +L S + E E+ + + I + S G N + Sbjct: 391 RGDTGVKSGFLGIARDISARKRAENDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQA 450 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + +YK + +E++ D+ +L + + A ++ Sbjct: 451 LLDMLEYKREELLELS------FQEITHPDDLDADLALLKETLDGKRQSYALEKRYFDSK 504 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + E + + + + ++ +L EA GI Sbjct: 505 GKIKWVNLNVSLVRDWKGEPVHFVSQIQDVTERHLLDEDLKQARERLLLATEAGKIGIWD 564 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTL 525 + L + + +LFGY E+ + + + + ++ + + Sbjct: 565 WDAATDTLLWDDQMLRLFGYEKEEFKTPFDAWYNGVHPDDFPELEKKRLAAIAGETQYDE 624 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 E + + E + L I++ F D++E ++ +L+ A+ + Sbjct: 625 EFRIVLPSGEIRTLKTLAIVQMDEFGKAKRMVGINWDVTEAVVQREELARLAAEADDANR 684 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+ +IG + ++ + P N + A I SG +L ++ND Sbjct: 685 AKSQFLANMSHEIRTPINGVIGMTSLLLD---SPGLNSEQSKQARVIQSSGEALLALIND 741 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD SK+E+GK++L L + + + L+ A EK++ N +P + D Sbjct: 742 ILDFSKVEAGKLDLEILDFDLRDTLDDLSLLLGQRAGEKQLEFICKADNQVPDRLRGDPG 801 Query: 703 SVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKP 759 ++QI +N+ NAI FT +G ++++S + + V DTG+G++ + Sbjct: 802 RLRQILINLAGNAIKFTANGSVKVLVSLADRDEKTALLRFSVIDTGIGISEEKKRLLFSE 861 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHPH 817 F Q +S GTGLGL ++K +V+ G+ + S G+ P ++ + + Sbjct: 862 FTQADSSTTRLYGGTGLGLAISKQLVNLMDGEIGVTSEKGSGSEFWFTARLPYEESEYKN 921 Query: 818 D 818 + Sbjct: 922 E 922 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 58/564 (10%), Positives = 145/564 (25%), Gaps = 38/564 (6%) Query: 51 QSNFTDQNQESVSNTNYLDS-----ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105 + +D++ E V + + + + + + G + ++++ Sbjct: 2 SRSESDRDGELVPSARSNSALGKATASALLETLDDHAIVAV--TNPRGIITYVNDQFCAI 59 Query: 106 IGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 +++G V+ H + + + TW G+ G ++ + Sbjct: 60 SQYSREELMGKTHRVVNSGYHPEVFWKKVWADISSGATWKGQICNRAKFGGLYWLQTTIH 119 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 P+ E + F + + K S Sbjct: 120 --PVLDERGEIEQYVAFRT--DITEQKQVENKLRNSQMHLQETARLAKVGSWEWDLIDQK 175 Query: 225 FSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK----YPLLTSEESSLPEQEDFHTI 278 S + H + L A + + T ++ T Sbjct: 176 LSWSWMTKVIHEVGPDYEPDLDSAIAFYPEGEMRNRINSLVERTTRTGEPFDDELQIRTQ 235 Query: 279 NLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PF 333 + +S + + + + + L VD Sbjct: 236 EGRLKWVRTIGQAEMVDSQCVRVFGVFQDIDDDRRMREQSERNSALLRSLVDSVTEFSVI 295 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIE---------IAGGLSTLLDAPKLSDNNAIKPV 384 G + N L Y++ + + + + ++ K + Sbjct: 296 ATDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIFHMESEVEARSVELSKELGEDVSGFQ 355 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 A I+ + E + + GI + + + Sbjct: 356 TFVAKSLREGAEQREWTYIRKDGERI-PVILVVTPMRGDTGVKSGFLGIARDISARKRAE 414 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + + E + G+AI++ EG + N+A+ + Y E++L F + Sbjct: 415 NDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQALLDMLEYKREELLELSFQEITHPD 474 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 L E L RQ+ + K+ + + + + + + D Sbjct: 475 DLDADLALLKETL-DGKRQSYALEKRYFDSKGKIKWVNLNVSLVRDWKGEPVHFVSQIQD 533 Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584 ++E L A++ + Sbjct: 534 VTERHLLDEDLKQARERLLLATEA 557 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 38/391 (9%), Positives = 97/391 (24%), Gaps = 35/391 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-------------- 134 D G + + K +G A +++G++ + + + Sbjct: 297 TDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIFHMESEVEARSVELSKELGEDVSGFQT 356 Query: 135 --DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 R+ + T +G +P+ L P+ SGF G I Sbjct: 357 FVAKSLREGAEQREWTYIRKDGE--RIPVILVVTPMRGDTGVKSGFLG--IARDISARKR 412 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-----Y 247 + + +F E ++ + + + L + Sbjct: 413 AENDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQALLDMLEYKREELLELSFQEITH 472 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 D L + S ++ + +++ E ++S Sbjct: 473 PDDLDADLALLKETLDGKRQSYALEKRYFDSKGKIKWVNLNVSLVRDWKGEPVHFVSQIQ 532 Query: 308 HPSLSAYFDEGENLTPETV----DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362 + DE E + + I + + + L L Y+ + Sbjct: 533 DVTERHLLDEDLKQARERLLLATEAGKIGIWDWDAATDTLLWDDQMLRLFGYEKEEF--- 589 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + D ++ L I + + + + Sbjct: 590 KTPFDAWYNGVHPDDFPELEKKRLAAIAGETQYDE--EFRIVLPSGEIRTLKTLAIVQMD 647 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +F + GI + + + + ++ + Sbjct: 648 EFGKAKRMVGINWDVTEAVVQREELARLAAE 678 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 36/312 (11%), Positives = 86/312 (27%), Gaps = 24/312 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKR-QNTWYGK 146 + G ++++ L + +++ + +++ + + L + ++ + Sbjct: 438 VSLEGKWIQVNQALLDMLEYKREELLELSFQEITHPDDLDADLALLKETLDGKRQSYALE 497 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + +G ++L + E F + + K+ ++ Sbjct: 498 KRYFDSKGKIK--WVNLNVSLVRDWKGEPVHF--VSQIQDVTERHLLDEDLKQARERLLL 553 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTEKYPL 261 E K D L K T + A H DD + EK L Sbjct: 554 ATEAGKIGIWDWDAATDTLLWDDQMLRLFGYEKEEFKTPFDAWYNGVHPDDFPELEKKRL 613 Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + E+ E+ + T K + ++ + + + E Sbjct: 614 AAIAGETQYDEEFRIVLPSGEIRTLKTLAIVQMDEFGKAKRMVGINWDVTEAVVQREELA 673 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 D A FL ++ I G+++LL ++ Sbjct: 674 RLAAEADDAN------------RAKSQFLANMSHEIRTPINGVIGMTSLLLDSPGLNSEQ 721 Query: 381 IKPVMLYRSDRT 392 K + +S Sbjct: 722 SKQARVIQSSGE 733 >gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC domain-containing protein [Geobacter bemidjiensis Bem] Length = 647 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 159/389 (40%), Gaps = 14/389 (3%) Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 ++ E + + ++ +IL I + + N G Sbjct: 20 RTRELKQEIQERLRAEGQLAEARDHYLNILAEAPALIWRADTQAKCDWFNHTWLSFTGRT 79 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 +E+ + + + E + + I + Sbjct: 80 MEEEYGDGWAQGVHPDDLERCVAIWLGAFHQKAP--FEMEYRLRRHDGVFRWILDIGRPF 137 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 Y DI++ K + +L A++ AE S K++FLA +SHEIRTP+ +II Sbjct: 138 SGLDGSFAGYIGYCFDITDRKGAEMELVLAREAAEAASKAKTEFLANMSHEIRTPMNSII 197 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G ++++ EY I S +L I+ND+LD+SK+E+GK+ L SL Sbjct: 198 GMTQLLAYTELSA----EQKEYVEGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSL 253 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 ++++E I A+EK + ++ S IP ++ D +KQ+ LNI+ NAI FT SG Sbjct: 254 RQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGDRLRLKQVLLNIIGNAIKFTASGS 313 Query: 724 ---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 + ++ + V DTG+G+ L++ PF Q S R GTGLGL + Sbjct: 314 IAVTVALAEKKEEAARITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSI 373 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +V G+ + S G+ P Sbjct: 374 STKLVRLMGGRIWAESRKNAGSTFHFEIP 402 Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats. Identities = 36/423 (8%), Positives = 98/423 (23%), Gaps = 37/423 (8%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143 W D + G + G ++ I ++ + Sbjct: 55 LIWRADTQAKCDWFNHTWLSFTGRTMEEEYGDGWAQGVHPDDLERCVAIWLGAFHQKAPF 114 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L +G ++ I P + F+G+ G+ + Sbjct: 115 EMEYRLRRHDG--VFRWILDIGRPFSGLDGSFAGYIGY--CFDITDRKGAEMELVLAREA 170 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K + + + S + + + +E + Sbjct: 171 AEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTELSAEQKEYVEGILTSSEGLLAII 230 Query: 264 SEESSLPEQEDF------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 ++ L + E +L Q + ++ + A + Sbjct: 231 NDILDLSKVEAGKIELESRNFSLRQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGD 290 Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANP-------SFLLLTKYKSVDDIEIAGGLSTLL 370 L ++ + G++ + + L + Sbjct: 291 RLRLKQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAARITFSVTDTGIGIAPESLDRIF 350 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + R T + S ++ A ++ Sbjct: 351 -----APFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWA--------ESRKNAGSTF 397 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGYPV 489 + P + + + K + + ++ + I + + + NR + KL G Sbjct: 398 HFEIPFRLCAKKARPKASLNTAK-KAVWDGAKLRILLADDQ----EMNRNIMEKLLGRLG 452 Query: 490 EDI 492 D+ Sbjct: 453 HDL 455 >gi|255534205|ref|YP_003094576.1| two-component system sensor histidine kinase/met hyl-esterase/transferase hybrid [Flavobacteriaceae bacterium 3519-10] gi|255340401|gb|ACU06514.1| two-component system sensor histidine kinase/met hyl-esterase/transferase hybrid [Flavobacteriaceae bacterium 3519-10] Length = 747 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 99/736 (13%), Positives = 228/736 (30%), Gaps = 45/736 (6%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPI 152 ++ ++ + IG +G ++ D + + + Sbjct: 36 IEYTNQTWLEIIGLNKKTAVGKKIFDFFPEAADQLTAFFEETKETREPASAADFKLRIKR 95 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 G+ P+Y N F + ++ + + +++ E Sbjct: 96 SGSVQPAYFSFMYQPVYEDNGAFLYYA--VVILEISALVTIKYKMREDEERLRLATESSL 153 Query: 213 GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEES 267 + K +S + D + + + Sbjct: 154 TATWDLNLKTREIVHSPLLAKIFGYEAGENISHEQFRSHLFEYDRINIVDVAYKKALKTG 213 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + N Q + ++ L + + ++ + ++ Sbjct: 214 IYKYEARITDRNGVQKWISTNGKIFSDENELPDRMLGILQDITERKKNEIRQHQSHHQLN 273 Query: 328 KCP----IPFFVYSHGNLFYAN--PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + F + L N P FL + Y + + T + + + Sbjct: 274 TAMEATKLGLFDMNPETLEKYNFSPRFLEIFGYDPSSE-----TIDTHVFEKHIHKDFID 328 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + + + + + + N +G + D + Sbjct: 329 VRAQALQKAQETGDLHYQTKIVLRDG-SVKWIELYGRLLRESAASNAYISGTVRDITDLK 387 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVF 500 ++K+ + + + + +G + N++ G +++L Sbjct: 388 NYEQKLSASEKKYRFLADVMPQIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEGDGLNQM 447 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + + E + + + Sbjct: 448 VHPEEQEETGKRWAASVRTKKPFFFEH--RFRDSNNEYRWFMSKAFPEMDDAGNVTKWVG 505 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 T DI + K+++ K DF+ SHE++TP+T I G+ +++K R Sbjct: 506 TSTDIDDMKRQE--------------QQKDDFIKMASHELKTPVTTIKGYVQLLKRTRKD 551 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + + N I+ N + ++ DLLDIS++E+G + L+ SL E V+E+I ++ Sbjct: 552 S-DDKFLVNSLNTIENQVNNLSVLIGDLLDISRMENGYLLLNKHKFSLVELVTESIEDIK 610 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 I +I + AD +KQ+ N+L+NAI ++P + + Sbjct: 611 ASEQSHEINFEMKHFADI-EVFADKERLKQVLTNLLTNAIKYSPKANSVNVELWVEDGRG 669 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + + V D G+GM EL K + F ++ + G G+GL + K ++ GK ++ S Sbjct: 670 I-VSVEDFGIGMEASELGKIFERFYRVSGDDEKTFPGFGIGLYIVKDIIQRLDGKIWVES 728 Query: 797 TPAKGTLIEIIFPLYD 812 +G+ P+ + Sbjct: 729 EKNQGSKFYFSLPVSN 744 Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 48/377 (12%), Positives = 102/377 (27%), Gaps = 29/377 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDP----NNHIGDLLKRQ 140 TW+++ S L K G A + I + S + D + LK Sbjct: 156 TWDLNLKTREIVHSPLLAKIFGYEAGENISHEQFR--SHLFEYDRINIVDVAYKKALKTG 213 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKR 199 + + + G + I I+S E R GI+ + Sbjct: 214 -IYKYEARITDRNG--VQKWISTNGK-IFSDENELPD-RMLGILQDITERKKNEIRQHQS 268 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVL 254 + + + K G + E + ++ + + S + + HKD + Sbjct: 269 HHQLNTAMEATKLGLFDMNPETLEKYNFSPRFLEIFGYDPSSETIDTHVFEKHIHKDFID 328 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---- 310 + E L Q + + + Y L+ ++ + + Sbjct: 329 VRAQALQKAQETGDLHYQTKIVLRDGSVKWIELYGRLLRESAASNAYISGTVRDITDLKN 388 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E D P + G L Y N S L + + +E GL+ + Sbjct: 389 YEQKLSASEKKYRFLADVMPQIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEG-DGLNQM 447 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + + H + + F + + Sbjct: 448 VHPEEQEETGKRWAASVRTKKPFFFE-----HRFRDSNNEYRWFMSKAFPEMDDAGNVTK 502 Query: 430 QNGIEPEDVDTRINKRK 446 G + D + +++ Sbjct: 503 WVGTSTDIDDMKRQEQQ 519 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 13/130 (10%), Positives = 31/130 (23%), Gaps = 7/130 (5%) Query: 69 DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHI 127 SE + F + W + G L ++ G +++ G L + Sbjct: 395 ASEKKYRFLADVMP-QIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEGDGLNQMVHPEEQ 453 Query: 128 DPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + ++ + ++ + Y A P + + G Sbjct: 454 EETGKRWAASVRTKKPFFFEHRFRDSNNE--YRWFMSKAFPEMDDAGNVT--KWVGTSTD 509 Query: 187 NRVDNDPRAL 196 Sbjct: 510 IDDMKRQEQQ 519 Score = 43.5 bits (101), Expect = 0.15, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 7/137 (5%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 +IL+ G A++N +I TN+ ++ G + + K F + + Sbjct: 16 FGTILQKAQFGFALVNSSYVIEYTNQTWLEIIGLNKKTAVGKKIFDFF-PEAADQLTAFF 74 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSC----YSLTMHDISEWKQE 567 E + L + + + + + Y++ + +IS Sbjct: 75 EETKETREPASAADFKLRIKRSGSVQPAYFSFMYQPVYEDNGAFLYYAVVILEISALVTI 134 Query: 568 KNKLSHAKKIAEKESSH 584 K K+ ++ + Sbjct: 135 KYKMREDEERLRLATES 151 >gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419] Length = 917 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 121/635 (19%), Positives = 235/635 (37%), Gaps = 31/635 (4%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 RV A L L + + E ++F + + + Sbjct: 31 ARVAALTAAGLVSLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAFGDLRYWLT 90 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 ++ +++ + + + + ++ + + Sbjct: 91 DLSVSLLMNSQRNADEARARLQVQLERLARHAPVEVRQIGAEVDAYMETALQAADSYTQD 150 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 N +A + + + L + + + V E Sbjct: 151 NRIVGNALLAKARTHSGKV---------DTDLNRLVEQVKAEAEAARNEVVVQTEKTATT 201 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + +L + + + ++L RL+ + + IP E ++F Sbjct: 202 AAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVEIPQEGGDEFGA 257 Query: 427 NMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + E + + + + E + + + LE SDG + + + IL N ++F Sbjct: 258 MARTLSLFQESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIF 317 Query: 486 -GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-------K 537 + + + F +EQN + E++ L Sbjct: 318 PSHKPNTLRGRSFREIVEQNLETGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEKRFG 374 Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 +RI +K+P DI+E KQ + +L AK AE + KS FLA +SHE+R Sbjct: 375 ERWVRISKRKIPD-GGTVAVYTDITELKQRQVELERAKSHAESANEAKSQFLASMSHELR 433 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AIIG+SE++ + + + I +G +L ++ND+LD+SKIE+ KM++ Sbjct: 434 TPLNAIIGYSEMLIEEARDH-KEEELVPDLDKIASAGRHLLTLINDILDLSKIEANKMDV 492 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 E SL E + + + V F +++ ++ +D ++Q N+LSNA Sbjct: 493 FLETFSLAELLRDVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAK 552 Query: 718 FTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT GG++I+ ++ ++ +V DTG+GMT + ++ F Q S GT Sbjct: 553 FT-KGGRVILRVRREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGT 611 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL + ++ G + S KG++ + P Sbjct: 612 GLGLSITRSFCRLIGGVVTVESEAGKGSVFTMEVP 646 Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats. Identities = 29/419 (6%), Positives = 81/419 (19%), Gaps = 43/419 (10%) Query: 90 DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D+ + + + + + + G ++ + + K W + Sbjct: 301 DSDDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLETGQVDLEG--KSPQEWVDERV 358 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L + R+ + + +R + Sbjct: 359 RLHRDPAGLVDEKRFGERWVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESAN 418 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E K + + + + E D L + + Sbjct: 419 EAKSQFLASMSHELRTPLNAIIGYSEMLIEEARDHKEEELVPDLDKIASAGRHLLTLIND 478 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP----- 323 + + ++ + + L + + L RN + + F++ Sbjct: 479 ILDLSKIEANKMDVFLETFSLAELLRDVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTK 538 Query: 324 ---ETVDKCPIPFFVYSHGNLFYANPSFLL------LTKYKSVDDIEIAGGLSTLLDAPK 374 + G + + + L +A Sbjct: 539 LRQNLFNLLSNAAKFTKGGRVILRVRREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFT 598 Query: 375 LSDNNAIK-----------------------PVMLYRSDRTCIAASARLHTIQWNRENSL 411 +D + + V + Sbjct: 599 QADASTTRNYGGTGLGLSITRSFCRLIGGVVTVESEAGKGSVFTMEVPAKCESEVDRPPP 658 Query: 412 AMTFIPFEKANQF---PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E +N I + + + L + E D I + Sbjct: 659 EQAAQVRSGRTALIIDDEPAARNLIAKALAEAGLAAIEASNGQEGLAAAREHRPDAIIL 717 >gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 561 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 112/556 (20%), Positives = 214/556 (38%), Gaps = 54/556 (9%) Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT--KYK 355 L+ S + + +D P F + G+L AN L Sbjct: 9 PSSPLTEEPSSPGSPATPPDQLILLRLLDAVTDPLLFTNAEGHLRIANARARELLVAGEG 68 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASARLHTIQWNREN 409 + + A L+ L L+ + R + + + L T Sbjct: 69 ASEGHRRAVELNQHLFTTALASAATGGASTVRRRELSLVDPLQGTDLLFELVTTPMREAQ 128 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + G + R ++++ E ++L IL++ ++ I + + Sbjct: 129 GVVGVVSVLRNVTDLGRATQALGESYRRL--RASEQEARSERLRLDLILDSVANPIILTD 186 Query: 470 REGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 G ++ N +LF P + R+ + +L+ +LS + Sbjct: 187 PSGSMVLMNDPAERLFSAPAGSGEASRRRVRTNDAHFS-----SFLSHLLSQGSARRWRG 241 Query: 528 ITLGSTK-EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK----------------- 565 L + + K+ +HD +E + Sbjct: 242 ELHLMEPTTGTPLPMEAVASKVLTDQGETTSIVTLLHDRTETREKARLLEQLKTASSELE 301 Query: 566 -----------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ KL E+ S+ KS FLA +SHE RTPL AI+G++ ++ Sbjct: 302 AKVHTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGV 361 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 G + P ID +G +L ++N++LDI++IE+G+M L+ +L E + E ++ Sbjct: 362 SGEMM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAE 420 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + ++++ + +P + +D + VKQI LN+LSNA+ FT G I ++ + + Sbjct: 421 LDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGS-IQVNAEYQPS 479 Query: 735 EE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 V++ V+DTG+G+ EK + F Q+ +S GTGLGL + + + G+ Sbjct: 480 LSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRIT 539 Query: 794 IFSTPAKGTLIEIIFP 809 + S +G+ + P Sbjct: 540 VQSALGQGSTFTLHLP 555 >gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 615 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 129/586 (22%), Positives = 224/586 (38%), Gaps = 37/586 (6%) Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN-QYTKKQYFGTLQNNSKE-SFEY 302 + H + + + L+ + Sbjct: 12 DTLLHPSARYDALASARHRAFIAPRLFGAFAALAAFPIYLAFRGAPTGLEVAAFAWLIAP 71 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 + S + F+ L+ ++ + + + G A+ + + L + Sbjct: 72 ILLSYFLSRTGRFESANVLSSLSLAALVMAVAINTGG---IASFAAIWLVVIPLESALSA 128 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + A L+ A+ + + + S + A Sbjct: 129 SRRVVAFASAVALAGALALIAMSQFDWLPASQVGELSHGALMAVGIGSALLYCCGLAYAV 188 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + R + + E + + SD I+ R G + + A Sbjct: 189 E--------------SLARTSVALLSAEEDRYRLLARNMSDVISCHRRNGAVQFISPAAE 234 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----- 537 L G P +L + L++ +++E + Sbjct: 235 ALLGTPSSRLLGHGLFDRVHVVDRPAFLTALSDAGRGGEVRSVEFRVRRELPRGERSRTA 294 Query: 538 ---LLSLRIIIKKLPFSSC---------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 L L + + L + M D+++ KQ++ L A+ A + + + Sbjct: 295 AADFLWLEMRCRPLEQTVGGHVAAPDTEVVAVMRDVTDRKQQELALEQARAEAARADASR 354 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S FLA VSHE+RTPL AIIGFSE+I ++ + R EYA I+ SG +L +VN +L Sbjct: 355 SRFLATVSHELRTPLNAIIGFSEMIVQEQALMISAERRREYAQLINDSGQHLLSVVNGIL 414 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D+SK++SG + EP + A+ +L+ L A + I + T +++P + D R+ K Sbjct: 415 DMSKMDSGNFEILPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPDDLPEVNGDPRAFK 474 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 QI LN++SNAI FT GG + +S + LRV DTGVG+ +LE+ PF Q Sbjct: 475 QIVLNLVSNAIKFTERGGTVTVSAAVE-GAHLALRVVDTGVGIAADDLERIGDPFFQAGK 533 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + Q R EGTGLGL + K +V + G+ + S KGT + + PL Sbjct: 534 TYQRRHEGTGLGLSIVKTLVALHGGELTVASQLDKGTTVTAMLPLA 579 >gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 1082 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 120/654 (18%), Positives = 236/654 (36%), Gaps = 58/654 (8%) Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN----KVSSLTEY 246 N D + + + + + P R V L Sbjct: 206 NQQAKQILAQDLDPNLHTDQLCSTYQLYRADTNQLYPLDRLPIARSLQGETVTVDDLEVR 265 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK---QYFGTLQNNSKESFEYL 303 +A++ L+ + P+ + + L F I + T+K +Y TL+ ++ + L Sbjct: 266 HANQRIPLEMQTMPIYDEQGTLLYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQEL 325 Query: 304 S---------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 L E + P + N + + Sbjct: 326 ETKNQQLHQEIEERKLLEQKLRTSEGKMRAVFEAMPDIILIIDP----QTND--IQVAPT 379 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + DIE + L L + + + + + I L+ + + + Sbjct: 380 RPTRDIEKSIPLINQTIEQFLDSDNTQSWFQQIHQVIETQEPIHFDYSLN----DADQRV 435 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-R 470 T N + D + + + + ++ + I Sbjct: 436 WFTASIAPLPNNS-----VIWVARNITDRKRTQFALYQSEEKFARAFRSSPSAMTITRLS 490 Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 +G + N + + GY +I+ + N L I + + + E Sbjct: 491 DGCHIDVNDSFCQFTGYSAPEIIGRTALDLNLWVNQKDRNRMLKAISNKGIIRNYEFEFR 550 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + + L L +C DIS+ KQ + L AK AE+ + KS FL+ Sbjct: 551 TKSGDIRTALLSAEQINLDEQTCLIAVSQDISDRKQVEFALQRAKDTAEQANRAKSQFLS 610 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPL AIIGF++++ + ++ I RSG +L ++N++L +SK+ Sbjct: 611 NMSHELRTPLNAIIGFAQLLGRD---SSLTQEHHDHIGIICRSGEHLLSLINNVLQLSKV 667 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709 E+G++ L+ L + + +L A K + + + +PR + D ++Q+ + Sbjct: 668 EAGQVKLNCYSFDLYGMLQVLEEMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLI 727 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE-----------------VILRVRDTGVGMTNYE 752 N+++NAI FT GG + + E + + DTG+G+ + E Sbjct: 728 NLVNNAIKFTSQGG-VTLRVKAVQGEMGESTRHPTFNTLPIPQKLRFEIEDTGLGIASEE 786 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +E + F Q + EGTGLGLP+++ V G+ ++ S +G++ Sbjct: 787 IESLFEAFVQTEAGR-KSLEGTGLGLPISQQFVRLMGGEIHVSSRLNQGSIFTF 839 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 44/366 (12%), Positives = 107/366 (29%), Gaps = 50/366 (13%) Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGE 319 + + Q FH +N KQ L+ + S E + + H E E Sbjct: 120 AELLARIQTQLHFHKLNAENLRLKQENTDLKILLETSTEHGDLVFEQLHDQAEEAVRESE 179 Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE----------------I 362 + + ++ P+ V G L++ N + ++ Sbjct: 180 HRLAQFLEAVPVGVLVVEASGKLYFMNQQAKQILAQDLDPNLHTDQLCSTYQLYRADTNQ 239 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA---------- 412 L L A L + R I + I + L Sbjct: 240 LYPLDRLPIARSLQGETVTVDDLEVRHANQRIPLEMQTMPIYDEQGTLLYGISVFKDITA 299 Query: 413 ------------MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 T + + E + ++ ++K+ ++ ++ EA Sbjct: 300 RKRTEKILTEYNQTLEQAVRDRTQELETKNQQLHQEIEERKLLEQKLRTSEGKMRAVFEA 359 Query: 461 TSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 D I II+ + + R + ++ + FL+ + + +++ Sbjct: 360 MPDIILIIDPQTNDIQVAPTRPTRDI--EKSIPLINQTIEQFLDSDNTQSWFQQIHQVIE 417 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 ++ + + +++ + I LP +S +I++ K+ + L +++ Sbjct: 418 T--QEPIHFDYSLNDADQR-VWFTASIAPLPNNS-VIWVARNITDRKRTQFALYQSEEKF 473 Query: 579 EKESSH 584 + Sbjct: 474 ARAFRS 479 Score = 74.3 bits (181), Expect = 8e-11, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-----DILRK 495 + + +L LEA G+ ++ G + N+ ++ ++ D L Sbjct: 169 DQAEEAVRESEHRLAQFLEAVPVGVLVVEASGKLYFMNQQAKQILAQDLDPNLHTDQLCS 228 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + ++ L SL ++ + L + + Sbjct: 229 TYQLYRADTNQLYPLDRLPIARSLQGETVTVDDLEVRHANQR-IPLEMQTMPIYDEQGTL 287 Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 L DI+ K+ + L+ + E+ ++ L Sbjct: 288 LYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQEL 325 Score = 44.2 bits (103), Expect = 0.082, Method: Composition-based stats. Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 5/134 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G ++++ + G A ++IG D++ ++ N + + + + Sbjct: 491 DGCHIDVNDSFCQFTGYSAPEIIGRTALDLNLWVNQKDRNRMLKAISNKGIIRNYEFEFR 550 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + ++ + A + +R + K Sbjct: 551 TKSGDIRTALLSAEQINLDEQTCL-----IAVSQDISDRKQVEFALQRAKDTAEQANRAK 605 Query: 212 KGHSSVEKEKYDIF 225 S + Sbjct: 606 SQFLSNMSHELRTP 619 >gi|91786123|ref|YP_547075.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91695348|gb|ABE42177.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 953 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 99/619 (15%), Positives = 207/619 (33%), Gaps = 38/619 (6%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + +++ + + R ++ + ++ L Sbjct: 96 RSANLLPDQPELDELIGQRRTVTNQVVAARQTEGQAAAVAILNSDANRQLRQRTDSLLET 155 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---------HRNHPSLSAYFD 316 + + + ++ + L+ A Sbjct: 156 ARNRENLAWQRAQADAERSAQRVQHFIIAAGLLFLAMLAWMVYVVTHYEEVRKRAEAKLR 215 Query: 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E +T + + AN + L L Y+ + I L +L Sbjct: 216 DSETMTRMITESMADAVITTTDDDIVLQANAAALQLFGYEKSELIGRDVSE---LVPERL 272 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 L A + +++ + A + Sbjct: 273 RGQYKSFTAALRARPEPFRMADHDVRSMRKDGTEFPASVSFSDV---HVGGQRLFTALIS 329 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 ++ + R + QL I + IA ++ E NRA ++ G E I Sbjct: 330 DNTERRRITEALRASESQLRQITDTVPALIAYLDLEQRFRFHNRAYEEVLGLEFERIDGH 389 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552 L + + E L E++ + + K +++ + + Sbjct: 390 TLAEVLGPQLYEGVQDKVDEALR-GYAVQYERVQVTPQGDRKNYAMQYFPRYGEGADEGK 448 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+E K+ K++F++ VSHE+RTPLT+I G +I Sbjct: 449 VVGFFSLGTDITELKRI--------------DRMKTEFVSTVSHELRTPLTSIRGSLGLI 494 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 G L + ++ ++ND+LD KIESGK+ L+ + L + + Sbjct: 495 SGGVAGELP-EAVKSLVAIATSNCERLIRLINDMLDSEKIESGKLRLNLQAAELKPLLRQ 553 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A++ + +A + + +R + + D + Q+ N+LSNA+ F+P+G + + + Sbjct: 554 ALAANEGFAAQHGVKLRLRAPDAALQARIDGDRLMQVMTNLLSNAVKFSPAGSTVEVMLS 613 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 T+ +V + V D G G+ + + F Q +S + G+GLGL +++ ++++ G Sbjct: 614 RTAR-QVRVEVSDQGPGIPEAFRNRIFQKFSQADSSDTRQKGGSGLGLNISRGLIESMGG 672 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + S GT P Sbjct: 673 RIGFNSNGGAGTTFFFELP 691 Score = 46.9 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 42/390 (10%), Positives = 90/390 (23%), Gaps = 19/390 (4%) Query: 26 SKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYL-DSENTFVFDPIPRTVR 84 S +K F S + + N E T L SE+ Sbjct: 299 SMRKDGTEFPASVSFSDVHVGGQRLFTALISDNTERRRITEALRASESQLRQITDTVPAL 358 Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143 + +D + + + +G ++ G L +V + + + + L R Sbjct: 359 IAY-LDLEQRFRFHNRAYEEVLGLEFERIDGHTLAEVLGPQLYEGVQDKVDEAL-RGYAV 416 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + +G + P Y + GF F + + Sbjct: 417 QYERVQVTPQGD--RKNYAMQYFPRYGEGADEGKVVGF--FSLGTDITELKRIDRMKTEF 472 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 SH S + V SL + L Sbjct: 473 VSTVSHELRTPLTSIRGS------LGLISGGVAGELPEAVKSLVAIATSNCERLIRLIND 526 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 +L SE+ + + +Q + + + L R + +G+ Sbjct: 527 MLDSEKIESGKLRLNLQAAELKPLLRQALAANEGFAAQHGVKLRLRAPDAALQARIDGDR 586 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 L + G+ + V+ + G+ + Sbjct: 587 LMQVMTNLLSNAVKFSPAGSTVEV--MLSRTARQVRVEVSDQGPGIPEAFRNRIFQKFSQ 644 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + + I+ Sbjct: 645 ADSSDTRQKGGSGLGLNISRGLIESMGGRI 674 Score = 46.2 bits (108), Expect = 0.025, Method: Composition-based stats. Identities = 16/193 (8%), Positives = 49/193 (25%), Gaps = 18/193 (9%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWY---GKTTLW 150 + + + + G ++IG + ++ L+ + + Sbjct: 241 VLQANAAALQLFGYEKSELIGRDVSELVPERLRGQYKSFTAALRARPEPFRMADHDVRSM 300 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHE 209 +GT + + + G R F ++ N + + + + + Sbjct: 301 RKDGTEFPASVSFS-------DVHVGGQRLFTALISDNTERRRITEALRASESQLRQITD 353 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + H R +V L + + L + + Sbjct: 354 TVPALIAYLDLEQRFR------FHNRAYEEVLGLEFERIDGHTLAEVLGPQLYEGVQDKV 407 Query: 270 PEQEDFHTINLNQ 282 E + + + Sbjct: 408 DEALRGYAVQYER 420 >gi|255036012|ref|YP_003086633.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254948768|gb|ACT93468.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 1084 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 105/740 (14%), Positives = 240/740 (32%), Gaps = 82/740 (11%) Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I ++R+ T+ + ++ +GT + A+PI +N + G Sbjct: 234 IQHAIQRKTTFEVEHQVFRRDGTVG--WVFSRAVPILDKNGAIR--QWVGAASDITSRKR 289 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKE-------------------------------- 220 + + L + + + Sbjct: 290 DERRQDFMLRLVDRLRPLAEPEQVADMACQMLVEHLNASRAQYTEVKGTAGKEVGTVRGE 349 Query: 221 ----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 +Y P + + +T+ + + ++ +++ Sbjct: 350 YVLTGRPMIREYAYAGFGEPMVAILRSGQTLVITDTDNDQRLTDEQKQSYAAVDSPAAIA 409 Query: 271 EQEDFH---------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 H + + + + + ++ + LS ++ L Sbjct: 410 VPLVKHGNMVGTFTIHHSAPREWSAEEIAITEEIADRTWTAVERAKAEELSRISEKRLRL 469 Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 E D + + + NL N + + L D+ Sbjct: 470 ATEAAD---MATWEWDLVSNLVIWNEQHFRIFGLSPQEA----PVHPELFFRHIHPDDRD 522 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 +L RS + + ++ + L ++ + +GI + Sbjct: 523 RVYALLQRSIQEDVEFDTEFRAVREDG-VGLWISGYGRVMERNQSGPILMSGIMLDITAR 581 Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++ + + +ILE+ D I ++ + N + GY +I+ K + Sbjct: 582 NESEAALHRIQARQGAILESAKDYAIFTLDLGLRVRDWNSGAEHVLGYSEAEIIGKSGEI 641 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 F + + ++ E + I L + Sbjct: 642 FFVPEDRAEGAPEYEKNKAI-QEGRAENERWHLRSDGSRFYGSGITSPLLDEAGNLIGLL 700 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 M D++ KQ L K +FLA ++HE+R PL + ++K R Sbjct: 701 KVMRDLTMQKQTDEALKI-------ADKRKDEFLAMLAHELRNPLATVRNGISLLKVTRQ 753 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + + + + +DR ++ +++DLLD+S++ GK+ L E + + ++ A+ + Sbjct: 754 ---NDAQMSDVVDMMDRQATHLVRMIDDLLDVSRVTQGKIQLQLERLDMAALINSAVKSI 810 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + +R ++ + D + Q+ N+L+N++ +T G + ++ T Sbjct: 811 RSQYEARRKVLDVQTGFAKLIVEGDATRLSQVVTNLLTNSLRYTGDEGHVWVTLTSQD-G 869 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E ++RVRD G+G+T + + F Q NS G G+GL + + +V + G+ Sbjct: 870 EAVIRVRDNGIGLTPEQQTSVFELFVQGDNSLARTQGGLGIGLTIVRQLVGMHGGRVEAK 929 Query: 796 S-TPAKGTLIEIIFPLYDTS 814 S G+ I PL +++ Sbjct: 930 SPGIGMGSEFTIYLPLLESN 949 Score = 105 bits (263), Expect = 3e-20, Method: Composition-based stats. Identities = 49/562 (8%), Positives = 140/562 (24%), Gaps = 53/562 (9%) Query: 78 PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137 P W ++ ++ + +G+ +G + + Sbjct: 48 AAPFPNLLLW---GEDLIQIYNDAYLEIMGDKHPGGLGQPVRQSWADAGDVHEPTYHRVW 104 Query: 138 KRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPR 194 ++ T+ G+ +A P+ + G F + + Sbjct: 105 AGESLTFEDVPQAITRAGSLQEAWYTIAYSPVRDDSGNMGGILVAAFETTNQLLERKERE 164 Query: 195 ALGKRL---DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + L +++F+ L + Q +L+ ++ + Sbjct: 165 NALQELAQSEERFARLVGATSDIIYTMSADWRHMIQLDGKEYLQSTMTLNGTWMEEYIPE 224 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + + + + + + + + + +++ + Sbjct: 225 EERLRVWTVIQHAIQRKTTFEVEHQVFRRDGTVGWVFSRAVPILDKNGAIRQWVGAASDI 284 Query: 310 SLSAYFDEGENLTPETVDKC-PIPFFVYSHGN-----LFYANPSFLLLTKY--KSVDDIE 361 + + ++ VD+ P+ + + N S T+ + ++ Sbjct: 285 TSRKRDERRQDFMLRLVDRLRPLAEPEQVADMACQMLVEHLNASRAQYTEVKGTAGKEVG 344 Query: 362 IAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAAS--------------------- 397 G L P + + +P++ + + Sbjct: 345 TVRGEYVLTGRPMIREYAYAGFGEPMVAILRSGQTLVITDTDNDQRLTDEQKQSYAAVDS 404 Query: 398 --ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EV 451 A + + T E + + T + + K E Sbjct: 405 PAAIAVPLVKHGNMVGTFTIHHSAPREWSAEEIAITEEIADRTWTAVERAKAEELSRISE 464 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVM 509 +L EA + ++ N ++FG ++ P F + + + Sbjct: 465 KRLRLATEAADMATWEWDLVSNLVIWNEQHFRIFGLSPQEAPVHPELFFRHIHPDDRDRV 524 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQE 567 L + D+ E + +S + + S M DI+ + Sbjct: 525 YALLQRSIQEDVEFDTEFRAVREDGVGLWISGYGRVMERNQSGPILMSGIMLDITARNES 584 Query: 568 KNKLSHAKKIAEKESSHKSDFL 589 + L + D+ Sbjct: 585 EAALHRIQARQGAILESAKDYA 606 Score = 74.7 bits (182), Expect = 7e-11, Method: Composition-based stats. Identities = 26/302 (8%), Positives = 83/302 (27%), Gaps = 38/302 (12%) Query: 313 AYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 A + + V P P ++ + N ++L + K GGL + Sbjct: 33 ADWSQSLRTAAALVLAAPFPNLLLWGEDLIQIYNDAYLEIMGDK------HPGGLGQPVR 86 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENSLAMTFIPFEKANQFPENM 428 + +P + I E + + P + + Sbjct: 87 QSWADAGDVHEPTYHRVWAGESLTFEDVPQAITRAGSLQEAWYTIAYSPVRDDSGNMGGI 146 Query: 429 PQNGIEP-----EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E E + +++ + ++ ATSD I ++ + Sbjct: 147 LVAAFETTNQLLERKERENALQELAQSEERFARLVGATSDIIYTMSADWR---------H 197 Query: 484 LFGYPVED-------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 + ++ + ++ + + + + +E + Sbjct: 198 MIQLDGKEYLQSTMTLNGTWMEEYIPEEERLRVWTVIQHAIQRKTTFEVEHQVFRR--DG 255 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES-SHKSDFLAR 591 + + + + + DI+ K+++ + ++ ++ + + +A Sbjct: 256 TVGWVFSRAVPILDKNGAIRQWVGAASDITSRKRDERRQDFMLRLVDRLRPLAEPEQVAD 315 Query: 592 VS 593 ++ Sbjct: 316 MA 317 Score = 44.2 bits (103), Expect = 0.090, Method: Composition-based stats. Identities = 12/141 (8%), Positives = 33/141 (23%), Gaps = 8/141 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142 + +D +++ + +G ++IG P ++ Sbjct: 607 IFTLDLGLRVRDWNSGAEHVLGYSEAEIIGKSGEIFFVPEDRAEGAPEYEKNKAIQEGRA 666 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G+ Y + P+ G ++ + K DK Sbjct: 667 -ENERWHLRSDGSRFYGSGITS--PLLDEAGNLIGLLK--VMRDLTMQKQTDEALKIADK 721 Query: 203 KFSHLHEIKKGHSSVEKEKYD 223 + + Sbjct: 722 RKDEFLAMLAHELRNPLATVR 742 >gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565] gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565] Length = 1414 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 94/519 (18%), Positives = 196/519 (37%), Gaps = 25/519 (4%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 +E +D P + L +N ++ L ++ + Sbjct: 542 EIVQRQRAEKTLNEQLVFIQTLLDSLPNMVALRDRDHRLTLSNRAYRELF-VGDGEEGDH 600 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G ++ + ++ S + L + ++ Sbjct: 601 WGYMT------EDERQQMLREERAVWETGDIFEGSGYTQR---EGDVPLHVVYVKLPYRA 651 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTN 478 + + + + K+ +L I ++ + +G L + Sbjct: 652 ADGAIQGVLTVLTDVSALKAAENKVREVEGRLRDITDSMPGLVYQYLWQGAGKGQFLYLS 711 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEE- 536 + S + G ++++ + + ++ ++ + L+ L + + Sbjct: 712 QGASDILGMTHQELMAAESGGVILGLNDEALATFIDKVAKHAQTLEPLDMEVLVPSVQGE 771 Query: 537 KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + + +R + DI+ KQ++++L A+ AE+ +S FLA +SHE Sbjct: 772 RYIQIRGNFVAQQGHDRLLNGVVQDITAIKQQEHELREARAAAEQAMQARSLFLATMSHE 831 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTP++ + G E+++ N ++ S N +L +VND+LD SKIE+G++ Sbjct: 832 LRTPISGMHGMLELLRMSEL----NDDQRYLLRNVESSANHLLYLVNDILDFSKIEAGQL 887 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSN 714 +L+ + L V + I A K + + + + +P + D V Q+ N+L+N Sbjct: 888 HLNRQSCRLQPVVCDVIRGHAALAYSKGLKVTLQWEDQLPDLADIDPVRVGQVVSNLLNN 947 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 A+ FT G I I + ++++ V DTG+G+ + K PF Q+ + R GT Sbjct: 948 AVKFTEQGA-ISIQVSCHDQ-QLVIAVTDTGIGIAEEKQAKLFTPFEQVESDINRRFGGT 1005 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 GLGL + +V G + S +G PL + Sbjct: 1006 GLGLAICDQLVKKMGGTLTVKSQLGEGACFRFSIPLLNV 1044 Score = 39.2 bits (90), Expect = 2.7, Method: Composition-based stats. Identities = 8/126 (6%), Positives = 33/126 (26%), Gaps = 6/126 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D L + + + G +++ + + + + G Sbjct: 575 DRDHRLTLSNRAYRELFVGDGEE--GDHWGYMTEDERQQMLREERAVWETGDIFEGSG-- 630 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + ++ + + LP + + G ++ + ++ + + + Sbjct: 631 YTQREGDVPLHVVYVKLPYRAADGAIQGV--LTVLTDVSALKAAENKVREVEGRLRDITD 688 Query: 210 IKKGHS 215 G Sbjct: 689 SMPGLV 694 >gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 576] Length = 818 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 158 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 216 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 217 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 274 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 275 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 330 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 331 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 388 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 389 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 448 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 449 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 504 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 505 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 564 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 565 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 623 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 624 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 662 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 191 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 250 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 251 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 308 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 309 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 368 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 369 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 413 >gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116] Length = 827 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 162/371 (43%), Gaps = 17/371 (4%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-- 505 E E L ++++A D I I + G + N+A + GY ++ I FL+ Sbjct: 321 EKESELLATVVKAARDAIVITDHHGKVEWVNKAFESMTGYQLDGIKGLAPGAFLQGADTS 380 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561 P + + + +T L T+ ++ + I I L + DI Sbjct: 381 PDTIADIGKAVRQGEQVRT---EILNYTRNKQPYWIDIDIIPLRNEQGVVERFIAIERDI 437 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K+ ++ L A + + KS FLA +SHEIRTPL ++G +++ + + + Sbjct: 438 TEVKRLESDLETEALKARRANEAKSAFLATMSHEIRTPLNGLLGMLQILNDD----IRDL 493 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + SG +L I+ND+LD++K+ES + L P + + ++ Q +E Sbjct: 494 EQRKVLRLALNSGEHLLSILNDILDLAKVESDALALDIHPFKMADIITPVEVTYQGLCSE 553 Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 K I+ ++ D ++Q+ LN++ NA+ FT +G I + + V Sbjct: 554 KGIVFNVDNHCSDDCYYCGDSVRIRQVLLNLVGNALKFTKTG-HINVCIKALESPFVEFC 612 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ ++ F Q S + GTGLGL + + +V G+ + S K Sbjct: 613 VEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTGLGLAICQKLVTLMNGQISVESGLGK 672 Query: 801 GTLIE--IIFP 809 G+ I P Sbjct: 673 GSQFRFVISLP 683 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 40/139 (28%), Gaps = 6/139 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146 D HG ++ +++ G + G+ P+ IG +++ + Sbjct: 341 TDHHGKVEWVNKAFESMTGYQLDGIKGLAPGAFLQGADTSPDTIADIGKAVRQGEQVRTE 400 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + ++ ID+ +P+ + R I + + K Sbjct: 401 ILNYTRNKQPYWIDIDI--IPLRNEQGVVE--RFIAIERDITEVKRLESDLETEALKARR 456 Query: 207 LHEIKKGHSSVEKEKYDIF 225 +E K + + Sbjct: 457 ANEAKSAFLATMSHEIRTP 475 >gi|121604608|ref|YP_981937.1| signal transduction histidine kinase with CheB and CheR activity [Polaromonas naphthalenivorans CJ2] gi|120593577|gb|ABM37016.1| signal transduction histidine kinase with CheB and CheR activity [Polaromonas naphthalenivorans CJ2] Length = 1408 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 126/639 (19%), Positives = 222/639 (34%), Gaps = 25/639 (3%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-LT 244 + D +AL + + F + E + + + +V + L Sbjct: 646 IATQRGDSQALVEMTVRFFGEEGPEAALTLVMFDEVPEKPGDLQLKGIDQAQQQVIAQLE 705 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L+ TS E E+ IN + + T + + E L+ Sbjct: 706 AEIRQLKEDLQQTIEQAETSTEELKASNEELQAINEELRSATEELETSKEELQSINEELT 765 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360 N L DE + + + F+ + P L D Sbjct: 766 TVNFE-LKIKVDETSKINNDLQNFITSTDIATIFIDRGMRIKRYTPQSASLFNLIESDLN 824 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 ++ LD L ++ L + +R + + P+ Sbjct: 825 RSLLDITHKLDYSALVNDVTEVFNTLNKVERQ----------VSSSDGRHYLARIRPYRT 874 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479 + E + R + + +L E T D I I+ EG+I + N Sbjct: 875 TDDRIE--GAVLTFVDVTALRQAEENVRAGEERLRIAAETTKDYAILTIDEEGLITTWNH 932 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 ++FGY ++ + + F + + E+ K+ Sbjct: 933 GAERIFGYSEKEAVGQLFAIIFTPEDRAAG-AADEELRLAREEGRSTDERWHLRKDGSTF 991 Query: 540 SLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 ++ +L Y+ DI+E K + + ++ + K FLA +SHE++ Sbjct: 992 FCSGVVTRLEGKMGGYAKIARDITENKTLQVSRDELLAMEKRANELKDQFLAVMSHELKH 1051 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL I +E++ +Q P + I + I++DLLD+S+ +GK+ L Sbjct: 1052 PLNLIQVNTELLLSQPEVRAL-PEVVRAGETIRHAVVSQTKIIDDLLDLSRARTGKLTLR 1110 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 PV+LDE S + A++K + + ++ L D +QI N+++NAI F Sbjct: 1111 LAPVNLDELAEMIASAAREAASKKGLTLVYECSDKEVLALCDRVRTEQIFWNLINNAIKF 1170 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLG 777 TP GG I + E V DTG G+T L + F Q PN + G G+G Sbjct: 1171 TPEGGTITVQLE-RDAEFAKFSVTDTGQGITAEFLPQIFGMFVQAPNQKVPSTNMGLGVG 1229 Query: 778 LPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815 L L + + A GK S KG + PL T+ Sbjct: 1230 LTLVRDLTVAQGGKVLADSAGLGKGATFSVWLPLAQTTQ 1268 Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 27/245 (11%), Positives = 55/245 (22%), Gaps = 27/245 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GK 146 ID G + + + G + +G + +L + + Sbjct: 921 IDEEGLITTWNHGAERIFGYSEKEAVGQLFAIIFTPEDRAAGAADEELRLAREEGRSTDE 980 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ + + L + G+ I + + L Sbjct: 981 RWHLRKDGSTFFCSGVVTRL-----EGKMGGYAK--IARDITENKTLQVSRDELLAMEKR 1033 Query: 207 LHEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAH--------- 249 +E+K +V + P +R +V E H Sbjct: 1034 ANELKDQFLAVMSHELKHPLNLIQVNTELLLSQPEVRALPEVVRAGETIRHAVVSQTKII 1093 Query: 250 -KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 L + LT + + E I G E L+ + Sbjct: 1094 DDLLDLSRARTGKLTLRLAPVNLDELAEMIASAAREAASKKGLTLVYECSDKEVLALCDR 1153 Query: 309 PSLSA 313 Sbjct: 1154 VRTEQ 1158 >gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1] gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1] Length = 744 Score = 335 bits (859), Expect = 2e-89, Method: Composition-based stats. Identities = 110/387 (28%), Positives = 175/387 (45%), Gaps = 14/387 (3%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 E + +M+ + +LE D + + EG IL NR +L +D+ Sbjct: 89 AEQHIEELADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRILYANRIFGELMECEPQDL 148 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K TP I + R + + + + + S I ++ SS Sbjct: 149 FGKTLHQLGVDITPPS-----AGIFPEEERLSSTDVAIHTRNGLRWFSWTEISRREGESS 203 Query: 553 CY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 DI+ K+ + L +A++ AE+ S KS FLA VSHEIRTP+ IIG + ++ Sbjct: 204 SVSHWAIARDITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLL 263 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + R Y I S + +L ++ DLLD SKIE+G++ L + ++ E + Sbjct: 264 SDTRLSS----EQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIES 319 Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IIS 728 I L+ + A K+I + A +P ILAD ++QI LN+L NAI FT GG + ++ Sbjct: 320 VIELMAVRAFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVT 379 Query: 729 TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 TT ++ RV DTG G+ L + + F Q S + G GLGL + + ++DA Sbjct: 380 TTIHDGAPKLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDA 439 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + S P +G + PL Sbjct: 440 MEGTVTVDSAPGEGATFTVYIPLVGAE 466 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 40/420 (9%), Positives = 97/420 (23%), Gaps = 30/420 (7%) Query: 38 KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV-RFTWNIDAHGYLK 96 S+K+ H + +Q+ E +++ E F + T+ N D G + Sbjct: 74 PSEKKPEEH--PHEQTPAEQHIEELADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRIL 131 Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156 + + + + G L L +D + + Sbjct: 132 YANRIFGELMECEPQDLFGKTL----HQLGVDITPPSAGIFPEEERLSSTDVAIHTRNGL 187 Query: 157 LYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + +++ R E S + I ++ K Sbjct: 188 RWFSWTEIS-----RREGESSSVSHWAIARDITARKRAETALVNARERAEQASIAKSRFL 242 Query: 216 SVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + + I + R+ ++ + + L LL + Sbjct: 243 ATVSHEIRTPMNGIIGMATLLSDTRLSSEQRTYVAAISTSASALLALIEDLLDYSKIEAG 302 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-TVDKC 329 E + + + + L P++ + ++ Sbjct: 303 RLELEPQRMAARELIESVIELMAVRAFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLL 362 Query: 330 PIPFFVYSHGNLFYAN-----PSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 G + L + LS + + +D ++ + Sbjct: 363 GNAIKFTDEGGVLMTVTTTIHDGAPKLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRK 422 Query: 384 -----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L + R A + E + +IP A + Sbjct: 423 HGGAGLGLAITRRLIDAMEGTVTVDSAPGEGATFTVYIPLVGAEGSAAETSLALKGFDVA 482 >gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1] Length = 514 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 18/376 (4%) Query: 455 CSILEATSD---GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL------EQNT 505 ++EA + G + +R+ ++ N ++ +P I Sbjct: 13 RHLIEAVEEFGQGFTVFDRDLNLILCNNRFLEMLDFPPSLIHPGTVFADFMRYNAMRGEY 72 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 L R + ++ +R + T DI++ K Sbjct: 73 GPGDVEALVAERVERARNFAPHCFERERPDGTVVEVRGTPLP---GGGFVTTYTDITDRK 129 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L HAK AE+ + K++FLA +SHEIRTP+ ++G ++ P + Sbjct: 130 RAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTP----DQRD 185 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + S +L I+ND+LD SK+E+G+M L L + E ++L++ A +K + Sbjct: 186 HLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLT 245 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRD 743 + A+ +PR D ++Q+ N++ NA+ FT G + + + + + V D Sbjct: 246 LSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFEVAD 305 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ F Q +S R GTGLGL + K +V+ G+ S P +GT Sbjct: 306 TGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGEGTT 365 Query: 804 IEIIFPLYDTSHPHDC 819 PL D Sbjct: 366 FHFTLPLSAALPDQDS 381 >gi|240142356|ref|YP_002966866.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium extorquens AM1] gi|240012300|gb|ACS43525.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium extorquens AM1] Length = 1072 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 104/541 (19%), Positives = 200/541 (36%), Gaps = 26/541 (4%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANP 346 + + L +E + L D P V + N Sbjct: 291 AASVLAVLPVVAMLADKARLEKSLNEAKALFLGVFDSSPEMLIVQYQDAEGQIRVETCNE 350 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + I L K S N A + R+ + R ++ Sbjct: 351 NAAQAFGRSQEACIGR---TVESLIRGKASRNVAEDIEHVMRTGESVR----RTREVRHR 403 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ + + ++ + + +L + E T+D I Sbjct: 404 ERGTIFEDISVPLRDPSTGRVTRVLSSVRDITARLQAEKAVRVSEARLRLLAENTTDMIV 463 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + + A ++ G+ +++ Q+ + + ++ Sbjct: 464 EFDLGLRCTYVSPASREIIGFAPAELVGTDPYEHCLQDDAPEIQRAVAPLI-DGTFSHAA 522 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 ++ + + + + S +M D++E KQ + L A+ AE+ S Sbjct: 523 STHRALHRDGRTVWIETRWSLVRSESGRPAGVVASMRDVTERKQAEIALVRAQAEAEQAS 582 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 + KSDFLA +SHEIRTPL I G++ ++ + P R + I + ++ +V+ Sbjct: 583 AAKSDFLATMSHEIRTPLNGIAGYAGLLMTEDGLP---ARSRRHVERIQTASQVLKTVVD 639 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701 D+LD SKIE+G++ L L V + +++V+ + A ++ D Sbjct: 640 DVLDFSKIEAGRVELVPTTFGLARLVDDVVAIVRGGVPADGPHVEGEIAPSLDGAYVGDE 699 Query: 702 RSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMK 758 ++QI LN+L+NA+ FTP+G I+ + + VRDTG+G++ + + + Sbjct: 700 NRLRQILLNLLNNAVKFTPAGSVDLRIVDLGLEAGSRRLRFSVRDTGIGISPEQQKLLFR 759 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816 F QI S R GTGLGL +++ +V G + S+ G+ I P + + P Sbjct: 760 KFSQIDASNVRRYGGTGLGLAISQRLVGLMGGAIEVSSSLGTGSEFSFEISLPEHADAPP 819 Query: 817 H 817 Sbjct: 820 Q 820 Score = 46.2 bits (108), Expect = 0.025, Method: Composition-based stats. Identities = 26/249 (10%), Positives = 58/249 (23%), Gaps = 14/249 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT- 147 D +S + IG +++G + + + L+ + T Sbjct: 466 DLGLRCTYVSPASREIIGFAPAELVGTDPYEHCLQDDAPEIQRAVAPLIDGTFSHAASTH 525 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G V I+ + S + +G + R + Sbjct: 526 RALHRDGRT--VWIETRWSLVRSESGRPAGV--VASMRDVTERKQAEIALVRAQAEAEQA 581 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 K + + + + L + ++T L T + Sbjct: 582 SAAKSDFLATMSHEIRT-PLNGIAGYAGLLMTEDGLPARSRRHVERIQTASQVLKTVVDD 640 Query: 268 SL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L E T ++ ++ PSL + EN Sbjct: 641 VLDFSKIEAGRVELVPTTFGLARLVDDVVAIVRGGVPADGPHVEGEIAPSLDGAYVGDEN 700 Query: 321 LTPETVDKC 329 + + Sbjct: 701 RLRQILLNL 709 >gi|242280556|ref|YP_002992685.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123450|gb|ACS81146.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1038 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 102/575 (17%), Positives = 206/575 (35%), Gaps = 56/575 (9%) Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIPFF-VYSH 338 + Q + + + A E + D P+ F Sbjct: 327 YEARMQEASRRIDEVNRQKDKVEQEIRNRHLADALRRRAEIKFRDIFDNAPMGIFQATLD 386 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G+ AN + L Y++ D++ +S++ D ++ + + V + R + Sbjct: 387 GSYLTANKALAELYGYENSDEL--ISEVSSVGDQVYMNSQDWQRCVQMLRFAGQVASYEV 444 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + ++ + G + + +++ + + S+ Sbjct: 445 ECQ--RKDGGTVWTSRDMRLV-ESEPGMSAYVEGFVIDVTARKKAEKEQQKSEWRFRSLF 501 Query: 459 EATSDGIA---------IINREG-------------------------IILSTNRAVSKL 484 E + + I + G I+ N + Sbjct: 502 ENSPVALWELDLSSVKEIFDSYGPDMLPVIREELLSDHKSVSRCVENIRIIDANNRTIEF 561 Query: 485 FGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 FG E ++ F+ ++ Q++ + ++L R E L E+ L + Sbjct: 562 FGTSSLEQLIDVGFSPYVTQHSWRIYRTVFLDLLKGAERHRSEFSFLRLDGREQFFILNL 621 Query: 544 IIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I + + DISE K+ + +L +++ A++ + K FLA ++HE RTP+ Sbjct: 622 TIVPGCEDSWERVLVAVEDISELKRIEKELRSSREEAQEANEAKGRFLANMTHEFRTPMN 681 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 A+ G ++++ E I S + +L IVND+LD SK++S M L+ E Sbjct: 682 AVKGMVQLLQRSELTS----EQQENLRLIKSSVDSLLVIVNDILDYSKLDSVHMELNEEN 737 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + + E +V + A K + + N + D ++Q+ +N+L N + FT Sbjct: 738 IDFPAFLREMGDVVDIGAMNKPLQVILEAENVPDCVRVDSLRLRQVLVNLLGNGVKFTDK 797 Query: 722 GGQIIISTTHT----SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G + + ++ V DTG+G+ E + F Q S + GTG Sbjct: 798 G-NVTLRCRPEGPEGEGGKLRLLFEVSDTGIGLPKDGAESLFESFVQADPSITRKYGGTG 856 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 LGL + +V G+ + G L + P+ Sbjct: 857 LGLAICYKLVKHLGGELSARNNEQGGALFSFVLPV 891 >gi|124267680|ref|YP_001021684.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] gi|124260455|gb|ABM95449.1| signal transduction histidine kinase-like protein [Methylibium petroleiphilum PM1] Length = 1317 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 122/761 (16%), Positives = 278/761 (36%), Gaps = 35/761 (4%) Query: 70 SENTFVFDPIPRTVRFTW-NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHI 127 +E + R++ W IDA G E S+E ++ ++ G + V + L Sbjct: 420 AEQQARLGAVLRSLPDLWFVIDAEGRHVECSDERHPSLFRPFEELRGKHFAEAVPEPLAS 479 Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 I + L+ + L ++G + P+ G R + Sbjct: 480 LAMRSIAEALRSGEVQRIEYELPTLDGRVRNF--EARISPMG-------GDRVLYLTRDL 530 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTE 245 + + + + + + + + L ++V Sbjct: 531 TELRHLERNVQLMQRALEAEAALPMVVADATQPDLPLIYANTAFERLSGLPLDQVIGRNC 590 Query: 246 YYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + D + L + E + + + + + +++ Y+ Sbjct: 591 RFLQAGDRDQPGLTRLREALAAERACSVTLRNQRADGTSFINELHVAPVRDTLGRVTHYV 650 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVD 358 ++ + + + L+ + + ANPS L ++ Sbjct: 651 GVQHDVTERSRAERQLALSETLYRSVAASITDGLLVIGPDRRIVTANPSACTLLGARATT 710 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 G + + + +A R+H ++ + + Sbjct: 711 LTGQRLGRLGYKLLEEDGRPVEHDRHPVREVLLSGRSALDRVHRLRRPDGSERLLRLNVQ 770 Query: 419 EKANQFPENMPQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 ++ + R + ++ + LE DGI + + ++ Sbjct: 771 PLRAHPDDSRLSCVVTFRDITAQRGAEAELAQAEARWKFALEGAGDGIWDYDEDTQLVFY 830 Query: 478 NRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + + GY ++I + ++ + + + + + ++ + K+ Sbjct: 831 SPRWKAMLGYRDDEIGTSTREWSRRIHPDDRPGVIDAIRRYRAGEITE-YRTEHRLRHKD 889 Query: 536 EKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + + + T D++ K + + K AE S KS FL+ Sbjct: 890 GHWIWVYERGKIVERRADGSPRRIVGTHTDVTRQKMAEQAMRD-KAAAELASQAKSAFLS 948 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 R+SHE+RTPL A+IGF+++++ G R ++ ++I ++G +L +VND+LD+ ++ Sbjct: 949 RMSHEMRTPLNAVIGFAQLLRKD--DAPGGARVAQFGDHILQAGEHLLALVNDVLDLQQV 1006 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E G++++ E + L AV A+ L++ A ++R+ + ++ + AD + ++Q+ LN Sbjct: 1007 EEGRLSIRLESLPLRAAVDAALELIRPQAAQRRVTVCNLIEPDL-SVQADPQRLRQVLLN 1065 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 +LSN + + GG++ S L + D G G+ +L + +PF ++ + Sbjct: 1066 LLSNGVKYNREGGELHCSAVLDGTTPCCTLLIEDQGFGLEADDLARLFQPFERL-GRETS 1124 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL +++ + + G+ + S P GTL + PL Sbjct: 1125 AIEGTGLGLVISRRLAEEMNGRLSLSSRPGHGTLARLELPL 1165 Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats. Identities = 47/495 (9%), Positives = 118/495 (23%), Gaps = 35/495 (7%) Query: 90 DAHGYLKEISEEL----PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144 D G + + + + + + + + D + R Sbjct: 316 DPRGRIVLSNTAWRTGMQRFLPEWPSHWPDLVHALLRAGAYPDATGREAEFAAWRLGLTT 375 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + +V + L + + Sbjct: 376 AEGRQHELRFGQQHVLVTDQLLA----DGSVIHLSI-----DITRRRRTELELAEQQARL 426 Query: 205 SHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYP 260 + V + + P R ++ E L Sbjct: 427 GAVLRSLPDLWFVIDAEGRHVECSDERHPSLFRPFEELRGKHFAEAVPEPLASLAMRSIA 486 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + T++ + + + Sbjct: 487 EALRSGEVQRIEYELPTLDGRVRNFEARISPMGGDRVLYLTRDLTELRHLERNVQLMQRA 546 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 L E + L YAN +F L+ ++ G + D Sbjct: 547 LEAEAALPMVVADATQPDLPLIYANTAFERLSGLP----LDQVIGRNCRFLQAGDRDQPG 602 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + + R S + G++ + + Sbjct: 603 LTRLREALAAERACSVTLRNQR---ADGTSFINELHVAPVRDTLGRVTHYVGVQHDVTER 659 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +R++ + S+ + +DG+ +I + I++ N + L G + + Sbjct: 660 SRAERQLALSETLYRSVAASITDGLLVIGPDRRIVTANPSACTLLGARATTLTGQRLGRL 719 Query: 501 ---LEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSS 552 L + + H + L R L+++ + LR+ ++ L P S Sbjct: 720 GYKLLEEDGRPVEHDRHPVREVLLSGRSALDRVHRLRRPDGSERLLRLNVQPLRAHPDDS 779 Query: 553 CY--SLTMHDISEWK 565 +T DI+ + Sbjct: 780 RLSCVVTFRDITAQR 794 Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats. Identities = 61/524 (11%), Positives = 147/524 (28%), Gaps = 47/524 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTW 143 W D HG + +S+ + G+ +G D + + L R Sbjct: 184 LWETDEHGTISWVSDSVEAHTGHPPSHEVGQ-FGQGMHRARDDEHRASWEALVAARAQQR 242 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + + + + I + P++ +F G+RG + + R +R Sbjct: 243 PFRNAVADRDAAHGTITISTSGDPVFDATGQFKGYRG--AARNITEELNRRTQEQRTQAL 300 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS----------PPPHLRMKNKVSSLTEYYAHKDDV 253 E V + I + P + V +L A+ D Sbjct: 301 LQAAIEGVAAGVMVSDPRGRIVLSNTAWRTGMQRFLPEWPSHWPDLVHALLRAGAYPD-- 358 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 T + + L E L + + Sbjct: 359 -ATGREAEFAAWRLGLTTAEGRQHELRFGQQHVLVTDQLLADGSVIHLSIDITRRRRTEL 417 Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLD 371 E + + P F + + G + L + +++ + Sbjct: 418 ELAEQQARLGAVLRSLPDLWFVIDAEGRHVECSDERHPSLF--RPFEELRGKHFAEAV-- 473 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+ + A++ + L +L FE Sbjct: 474 -PEPLASLAMRSIAEALRSGEVQRIEYEL--------PTLDGRVRNFEARISPMGGDRVL 524 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEA-TSDGIAIIN---REGIILSTNRAVSKLFGY 487 + + + R +E V + LEA + + + + + ++ N A +L G Sbjct: 525 YLTRDLTELR----HLERNVQLMQRALEAEAALPMVVADATQPDLPLIYANTAFERLSGL 580 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 P++ ++ + + L E L+ + ++ + + + Sbjct: 581 PLDQVIGRNCRFLQAGDRDQPGLTRLREALAAERACSV--TLRNQRADGTSFINELHVAP 638 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + Y HD++E + + +L+ ++ + ++ +D Sbjct: 639 VRDTLGRVTHYVGVQHDVTERSRAERQLALSETLYRSVAASITD 682 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 34/403 (8%), Positives = 90/403 (22%), Gaps = 16/403 (3%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + R K + D R + + Sbjct: 49 ISLVAADRQWFPASVGLEVRETPRKLAFCAHTILGNDAMEIVDAQRDERFADNPLVVGAP 108 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + + ++ + + + T E S Sbjct: 109 RLRAYAAVPVQVDGQRIGTVCAIDARPGRLPPDALATLRDLATLTSALLQARLQEQRSRL 168 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 + A G + ET + G + + + S T + ++ G Sbjct: 169 QESRVRAASRAGSDWLWETDEH----------GTISWVSDSVEAHTGHPPSHEVGQ-FGQ 217 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + V R A A + ++ ++ + + Sbjct: 218 GMHRARDDEHRASWEALVAARAQQRPFRNAVAD----RDAAHGTITISTSGDPVFDATGQ 273 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 G + + + + L + +E + G+ + + G I+ +N A Sbjct: 274 FKGYRGAARNITEELNRRTQEQRTQALLQAAIEGVAAGVMVSDPRGRIVLSNTAWRTGMQ 333 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + + + + G E + +++ Sbjct: 334 RFLPEWPSHWPDLVHALLRAGAYPDATGREAEFAAWRLGLTTAEGRQHELRFGQQHVLVT 393 Query: 547 -KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 +L DI+ ++ + +L+ + D Sbjct: 394 DQLLADGSVIHLSIDITRRRRTELELAEQQARLGAVLRSLPDL 436 >gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126] Length = 1092 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 97/425 (22%), Positives = 188/425 (44%), Gaps = 16/425 (3%) Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + I ++ + + + +GI + + +IN ++ Sbjct: 394 NGEAINFEVEFENPL--DKSVVWKEIFLNPIYTESGDITGLSGIAHDITERKINALNIQK 451 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 ++ +I E+ D +G I+ + +V + GY +++ T + + Sbjct: 452 SELKFRNIFESFQDIYFNCRFDGEIILISPSVKENIGYEQDEVTGNNITNYYLYTKKTKD 511 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYS--LTMHDISEWK 565 R+ T++ +L++ + + + S + DI++ K Sbjct: 512 LLKKLVSR----RKVQNFEATLITRDGRLVNCICNVRLVRDKDSREVTIEGVARDITKLK 567 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q +L HAK +AE K FLA +SHEIRTP+ +IG +++ + NP + Sbjct: 568 QANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMNGVIGMVDLLSQTQL----NPEQMN 623 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + I RS +L I+ND+LD+SKIE+GKM + + + ++L AN+K I Sbjct: 624 FVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHITEVKSVFDKVLNLFSQQANQKSID 683 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRD 743 + + IP+ + D + QI N+ SNA+ FT G++++ + + + + V D Sbjct: 684 LSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTEKEGKVLLHISKEIKDNLYRIAVED 743 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ + ++ K F Q+ NS GTGLGL ++K + G+ + S P +G++ Sbjct: 744 TGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLAISKQLSSLMGGQIGVSSEPDEGSV 803 Query: 804 IEIIF 808 Sbjct: 804 FWFTL 808 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 15/139 (10%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS----KLFGYPVE---D 491 + + + K+ + +L SI +++ I IN++ + S N+ K F + + D Sbjct: 308 ERKFIEEKISTQAGRLQSIFNSSNHIIWSINKDYKLTSFNQNFEYEFLKYFNFKPQVNTD 367 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKL-- 548 + K T + + L+ + + ++ ++ I + + Sbjct: 368 LRGKLITSIFTSGSYNFWGDKFESCLNGEA---INFEVEFENPLDKSVVWKEIFLNPIYT 424 Query: 549 --PFSSCYSLTMHDISEWK 565 + S HDI+E K Sbjct: 425 ESGDITGLSGIAHDITERK 443 Score = 46.2 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%) Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 G IL TN+ K GY +D+ + + +++ ++ L Sbjct: 53 ANGQILKTNKNWRKALGYSSQDLKHIFIRDIIFPEDWHKFQNVTDQVVKNKSQELL--EV 110 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSD 587 S+K + + I+ + DI+ + L + +S+ Sbjct: 111 RLSSKNNDKIHVTGILLISMSNKNIVANFQDITHQIHAQKAQNLFYEITNLTLKSTDLDS 170 Query: 588 FLARVSHE 595 + HE Sbjct: 171 LFRGI-HE 177 >gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1] Length = 776 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 109/624 (17%), Positives = 220/624 (35%), Gaps = 25/624 (4%) Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + +F Q P L+M+ V+ + H+D P+ Sbjct: 43 GYQTAELAGTRQIQDLLSAGGKVFYQTHWAPLLQMQGSVAEVKLSLMHRDG----HMLPM 98 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 L + + + + + + + + S H E ++ Sbjct: 99 LLNAVRRRHGEATYLEVAVLIVADRHKYEQ-ELLLARRNAEASVAAHQFAQKELQESRDV 157 Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + + + + G + + L Y GG + Sbjct: 158 LSLAMRGARMGAWSHEPKSGRF-WWSRELEALAGYAEGRFAHTPGG----FFERIHPGDL 212 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + T A + + + M ++ + G+ + + Sbjct: 213 IALNEAVDHAVETGDDYVAEFRFLHASGD-WCWMEGRGRAAYDRHGVPLMIYGLGIDITE 271 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + + + + +I E SD I I + G I N ++ GY + +IL +P + Sbjct: 272 RKEAQTVLLRQ----AAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGRPVAM 327 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557 FL + L+ + E + + + Sbjct: 328 FLPPEQALGIRREALAALAAEGTWRSELPFVRRDGSRGVCETVVKPLANARGDVYGAVSI 387 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DI+E ++ + +L+ K K +FLA ++HE+R PL + E+++ + F Sbjct: 388 NRDITERRRAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFAD 447 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + R + +V+DLL++S+I GK+ L + + L A+ A+ + Sbjct: 448 PQLSWSRDVFD---RQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARP 504 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + + ++AD + Q+ LN+L+NA +TP GG I + +E Sbjct: 505 TVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISL-AAEREGDEA 563 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++ VRD+G+G+ L+ + F Q+ + G G+GL L + + + + G FS Sbjct: 564 VIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSE 623 Query: 798 -PAKGTLIEIIFPLYDT-SHPHDC 819 P KG+ I PL T S P D Sbjct: 624 GPGKGSEFMIRLPLTKTASQPSDS 647 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 41/391 (10%), Positives = 103/391 (26%), Gaps = 32/391 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCD-VSDILHIDPNNHIGDLLKRQNTWYGK 146 D +G + ++ +G ++ G ++ D +S + H LL+ Q + Sbjct: 25 TDTNGRILRVNATFCGWLGYQTAELAGTRQIQDLLSAGGKVFYQTHWAPLLQMQGSVAEV 84 Query: 147 TT-LWPIEG-------------TNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRV 189 L +G +++A L + R +E R V Sbjct: 85 KLSLMHRDGHMLPMLLNAVRRRHGEATYLEVAVLIVADRHKYEQELLLARRNAEASVAAH 144 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLT 244 + L + D + + G S E + + + R + Sbjct: 145 QFAQKELQESRDVLSLAMRGARMGAWSHEPKSGRFWWSRELEALAGYAEGRFAHTPGGFF 204 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 E D + E + F + + + + Sbjct: 205 ERIHPGDLIALNEAVDHAVETGDDYVAEFRFLHASGDWCWMEGRGRAAYDRHGVPLMIYG 264 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + + + GN+ N + Y+ + + Sbjct: 265 LGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGRP 324 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + P+ + + + ++ T + L ++ + + T AN Sbjct: 325 V---AMFLPPEQALGIRREALAALAAEGT---WRSELPFVRRDGSRGVCETV-VKPLANA 377 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + I + + R ++++ ++L Sbjct: 378 RGDVYGAVSINRDITERRRAEQQLTRLNLEL 408 Score = 54.6 bits (130), Expect = 7e-05, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 4/132 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ E + G+ + + G IL N GY ++ L V Sbjct: 13 ALFEHAACGLLVTDTNGRILRVNATFCGWLGYQTAELAGTRQIQDLLSAGGKVFYQTHWA 72 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLS 572 L E ++ +L + + + + +++ + + +L Sbjct: 73 PLLQMQGSVAEVKLSLMHRDGHMLPMLLNAVRRRHGEATYLEVAVLI-VADRHKYEQELL 131 Query: 573 HAKKIAEKESSH 584 A++ AE + Sbjct: 132 LARRNAEASVAA 143 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 47/240 (19%), Gaps = 9/240 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G + + + + +G +++G + L + TW + Sbjct: 296 TDLRGNITDFNVGGERMLGYRMREILGRPVAMFLPPEQALGIRREALAALAAEGTWRSEL 355 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ + P+ + + G I RL+ + S Sbjct: 356 PFVRRDGSRGV--CETVVKPLANARGDVYGA--VSINRDITERRRAEQQLTRLNLELSKA 411 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 K + + P + + L Sbjct: 412 DRRKDEFLATLAHELR----NPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHL 467 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E +KQ + S D Sbjct: 468 VDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIAD 527 >gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3] gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3] Length = 1831 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 97/418 (23%), Positives = 175/418 (41%), Gaps = 22/418 (5%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVD------TRINKRKME-IEVMQLCSIL- 458 + + + E + + + E M+ +L Sbjct: 820 GSTLFTLRVGTRATRALTRSRIELEQLVKERTEALKAAMQKAEAATLSLAEQMKFQQLLI 879 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + + G L N+A + F +D++ + + + + Sbjct: 880 DTVPIPLFYKDANGKFLGFNKAYEETFQVESKDLVGLTVSDLTYLSKKDRQLYQAEDTEV 939 Query: 519 LDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + T++K + K+ + + DI+ K+ +L A Sbjct: 940 IANQTTIKKEMPIPFGDNKIHHTLYWVTGFKDSNGNPGGLVGNIIDITTEKENARQLEIA 999 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K A++ + KSDFLA +SHEIRTP+ AIIG S +I+ N + +Y I S Sbjct: 1000 VKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQTDL----NRKQSDYVTKIQNSA 1055 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+ND+LD SKIE+ K+ L P +L+++ + ++ +K + + N+ Sbjct: 1056 ESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHKTQQKGLELLIDIEPNL 1115 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMT 749 P ++ D + QI +N+ +NA+ FT G +III E + V+DTG+GMT Sbjct: 1116 PVDLIGDPLRLGQILINLANNAMKFTDEG-EIIIKARAVEQHEQQVTIEFAVKDTGIGMT 1174 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +L K K F Q S + GTGLGL ++K + + GK ++ S+ +G+ Sbjct: 1175 PEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVESSYGEGSTFLFT 1232 >gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp. AL212] Length = 683 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 119/635 (18%), Positives = 246/635 (38%), Gaps = 34/635 (5%) Query: 185 HVNRVDNDPRALGKR--LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 R R R L+ K + ++ +G ++ + D+ ++ + S Sbjct: 46 REIRDAALIRLSLLRADLEGKITSNAQLVQGLAASISVEPDLSLEKFAQLAQYLFKGRSQ 105 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 L A D +++ L +E + + + Sbjct: 106 LRNISAAPDLIIRYMYPVEGNEAAIGLNFREHPQQLESVLRARDSEHLIIAGPVDLVQGG 165 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDI 360 L + E E + I + G L + + + ++ Sbjct: 166 LGFIARIPVFLDNAESEKKAFWGMISAVIDVNKLYQASGLLDFVKEFDISIRGKDALGKA 225 Query: 361 EIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 G L + D + S ++ I ++T Sbjct: 226 GEVFFGTDQLFVQNPV------------LLDISLPYGSWQIAAIPKGG---WSVTGNEGI 270 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTN 478 + P + + +++ +L ++ + GIA+ + E G + N Sbjct: 271 VFRLGLVFTGILILLPVVLIAKFQQKE-RDNEARLKALFAISPIGIALNDYETGKFIEVN 329 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A+ GY E++L + ++ L + + +K + K+ Sbjct: 330 DALLVPTGYTREELLNLTYWDITPKDYAIQEAQQLESMQVTGSFCSYKKEYI--RKDGSH 387 Query: 539 LSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +++ + S L + DI+E K + L A+ AE+ + KS+FL+ +SHE Sbjct: 388 YPVQLYGIVIYDVSGRKLIWSMVEDITERKAAELSLISARYEAERANKAKSEFLSSMSHE 447 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTP+ AI+GFS++++ + + R++ Y I +G +L +++++LD++KIESG++ Sbjct: 448 LRTPMNAILGFSQLLELEGL----DDRHLTYVKGIKSAGVHLLALIDEVLDLAKIESGRI 503 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 +L E + + V E I+LV++ A+ + I + S + + D KQI LN++ NA Sbjct: 504 DLQPEWIDICTVVEECINLVKIQADGQDIKLTHSGMAD-KVLYTDRIRFKQIILNLIHNA 562 Query: 716 IHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 I + GG + I ++ N + + V D+G+G+ L + +PF ++ + EGT Sbjct: 563 IKYNRKGGWVHIELKNSDNPGYLKIIVIDSGIGIAANRLTQLFQPFNRLDAAGS-AIEGT 621 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GL L + +++ G+ + S G+ P Sbjct: 622 GIGLSLTRRIIEMMGGRIGVESELGVGSTFWFELP 656 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 6/137 (4%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLWP 151 G E+++ L G +++ + D++ + + ++ ++ K Sbjct: 323 GKFIEVNDALLVPTGYTREELLNLTYWDITPKDYAIQEAQQLESMQVTGSFCSYKKEYIR 382 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G++ P+ L + IY + + +V + ++ K Sbjct: 383 KDGSHY--PVQLYGIVIYDVSGR---KLIWSMVEDITERKAAELSLISARYEAERANKAK 437 Query: 212 KGHSSVEKEKYDIFSQQ 228 S + Sbjct: 438 SEFLSSMSHELRTPMNA 454 >gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_6] Length = 931 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 102/519 (19%), Positives = 202/519 (38%), Gaps = 29/519 (5%) Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + D E L P +Y G L N L + ++ D+ Sbjct: 422 TDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEIFGVENKQDVI 481 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + D + ++ +R + + A H + + ++ + + Sbjct: 482 GVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRD---TIDIYTKVSKLY 538 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477 + I ++ + ++ I + G A ++NR+G I Sbjct: 539 DNEGNFNGYILISIDNTEQIDAMNRIRDFENFFLLISDYAKVGYAKLNLLNRKGYAIKQW 598 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536 + + + P+ D++ + + + E+ + + ++ + K+ Sbjct: 599 YKNLGEEEDTPLADVVG--VYRNMHPEDRERIFDFYREVRKGNRKHFQGEMRIYRPGKKN 656 Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + +R+ + +DI+E K+ + +L A+ AE KS FLA Sbjct: 657 EWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEKELILARDKAEMMDRLKSAFLAN 716 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL AI+GFS+++ + EY + + +L+L +++D+LD+SKIE Sbjct: 717 MSHEIRTPLNAIVGFSDLLVDTE----NIEERREYIQIVKENNDLLLQLISDILDLSKIE 772 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G V ++ + + +Q+ E + + RI++D + Q+ N Sbjct: 773 AGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDPHLAECRIISDRNRLHQVISNF 831 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++NAI FT G I + E + V+DTGVG+ + F ++ + Sbjct: 832 VNNAIKFTSEGS---IRVGYKQKGEELEFYVQDTGVGIDAESQAHIFERFVKLNSFVH-- 886 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + +++V+ GK + S P KG+ P Sbjct: 887 --GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 PE G+ + + R ++ SI G+ I +++G ++ N ++ Sbjct: 412 PEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEI 471 Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542 FG +D++ F +++ L + E+ + + + + Sbjct: 472 FGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRDTIDIY 531 Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575 + KL + + Y L D +E N++ + Sbjct: 532 TKVSKLYDNEGNFNGYILISIDNTEQIDAMNRIRDFE 568 >gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides thetaiotaomicron VPI-5482] Length = 921 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 102/519 (19%), Positives = 202/519 (38%), Gaps = 29/519 (5%) Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + D E L P +Y G L N L + ++ D+ Sbjct: 412 TDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEIFGVENKQDVI 471 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + D + ++ +R + + A H + + ++ + + Sbjct: 472 GVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRD---TIDIYTKVSKLY 528 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477 + I ++ + ++ I + G A ++NR+G I Sbjct: 529 DNEGNFNGYILISIDNTEQIDAMNRIRDFENFFLLISDYAKVGYAKLNLLNRKGYAIKQW 588 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536 + + + P+ D++ + + + E+ + + ++ + K+ Sbjct: 589 YKNLGEEEDTPLADVVG--VYRNMHPEDRERIFDFYREVRKGNRKHFQGEMRIYRPGKKN 646 Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + +R+ + +DI+E K+ + +L A+ AE KS FLA Sbjct: 647 EWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEKELILARDKAEMMDRLKSAFLAN 706 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL AI+GFS+++ + EY + + +L+L +++D+LD+SKIE Sbjct: 707 MSHEIRTPLNAIVGFSDLLVDTE----NIEERREYIQIVKENNDLLLQLISDILDLSKIE 762 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G V ++ + + +Q+ E + + RI++D + Q+ N Sbjct: 763 AGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDPHLAECRIISDRNRLHQVISNF 821 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++NAI FT G I + E + V+DTGVG+ + F ++ + Sbjct: 822 VNNAIKFTSEGS---IRVGYKQKGEELEFYVQDTGVGIDAESQAHIFERFVKLNSFVH-- 876 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + +++V+ GK + S P KG+ P Sbjct: 877 --GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 913 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 PE G+ + + R ++ SI G+ I +++G ++ N ++ Sbjct: 402 PEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEI 461 Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542 FG +D++ F +++ L + E+ + + + + Sbjct: 462 FGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRDTIDIY 521 Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575 + KL + + Y L D +E N++ + Sbjct: 522 TKVSKLYDNEGNFNGYILISIDNTEQIDAMNRIRDFE 558 >gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis] Length = 1369 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 105/562 (18%), Positives = 190/562 (33%), Gaps = 48/562 (8%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353 + ++ + E D P + G + + N F T Sbjct: 485 LAGVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTAMPDGMVDFWNTRFYTYTG 544 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + D+ S T + + + Sbjct: 545 LTPENSLGKS------WVNAFHPDDLPEAHRRWQHSLDTGDSYVTEYRCQSKDGNWRWYL 598 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 ++ + + G + ++ K + QL S++ + I ++ Sbjct: 599 GRALPQRNKETGKVEKWFGTCTDVHESIQTKMSAKRTRQQLLSVIAHSHVTIFTVDPNRR 658 Query: 474 ILS------TNRAVSKLFGYPVEDI------LRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + N + I + T L + +L Sbjct: 659 VTMLEGALIWNNTHEENHDGTRWFIGENMYTVFNRLTAQLADGERPEFLEPIELLLDGKA 718 Query: 522 RQTL-EKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHA 574 + L E + L + + + + D++E K + L Sbjct: 719 TEDLKEHGIDDRWYRTRFLPMFGKRPQEGDATSDTYIEGVIGVIMDVTELKVREEALEKQ 778 Query: 575 KKIAEKES----------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K + KS FLA +SHEIRTP+T ++G +E++ + + Sbjct: 779 SKEKRRAMANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLSGMQL----DAEQQ 834 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I S +L ++ND+LD SK+ESG++++ SL V E ++Q K + Sbjct: 835 EYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNL 894 Query: 685 LIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737 ++ + I ++ D V+QI N+L+N+I FT G + S T EV Sbjct: 895 DFQSDIGDGIENDLVVIGDPGRVRQILTNLLTNSIKFTNQG-YVRFSVTAEKETSESIEV 953 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 V D+G+G+ + +K +PF Q S R GTGLGL + K ++D G+ + S Sbjct: 954 RFTVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESN 1013 Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819 GT P S P + Sbjct: 1014 VGVGTRATFWIPFNKPSGPAEA 1035 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 15/172 (8%), Positives = 39/172 (22%), Gaps = 7/172 (4%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-D 128 E F + W G + + G +G + + + Sbjct: 508 DEERFKLICDTMP-QLVWTAMPDGMVDFWNTRFYTYTGLTPENSLGKSWVNAFHPDDLPE 566 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187 + L +++ + +G + ALP + + + FG Sbjct: 567 AHRRWQHSLDTGDSYVTEYRCQSKDGN--WRWYLGRALPQRNKETGKVE--KWFGTCTDV 622 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 + KR ++ + + + + Sbjct: 623 HESIQTKMSAKRTRQQLLSVIAHSHVTIFTVDPNRRVTMLEGALIWNNTHEE 674 >gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1442 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 129/789 (16%), Positives = 251/789 (31%), Gaps = 79/789 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQN 141 W+ DA S+E +G ++ G L + V + Q Sbjct: 265 VWDWDAVTNRVFFSKEWKSMLGYEEHEV-GDSLQEWESRVHPEDWERIQVELQKHFDGQT 323 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 YG + +D + + R G + R Sbjct: 324 PVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKV--LRVIGTHTDITEIKKVQEDLSRTR 381 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + + + ++ ++++ T+ ++ Sbjct: 382 GQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTRDEIIGKTDLDIWPRELALVYME 441 Query: 260 PLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-- 316 S + + + + + + S + Sbjct: 442 DDREVMASKKQINKVERVQDKAGGIWFNTFKTPVFDQEGNVIGTAGITRDITESRRLEHE 501 Query: 317 --EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLS------ 367 E +D P F +L N +F S ++I L Sbjct: 502 LIEQRTFLKSLIDAIPDLIFYKDINSLYLGCNHAFAHRFIGLSEEEIVGRTDLDFVKDQE 561 Query: 368 --TLLDAPKLS----DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + +D + + + + Sbjct: 562 TARFFIQKDREILLSGETRMNEETITLADGSIMELETVKTPFFKGGTVAGLIGVSRDITK 621 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILST- 477 + +N + + ++ I +I L + + + Sbjct: 622 RKIAQNQLLIKQKI-LSNIASATNELLINSDYYEAINKCLALLGEATGV----DRVYMFK 676 Query: 478 -----NRAVSKL-FGYPVEDILRK---PFTVFLEQNTPSVMNHYL--TEILSLDLRQTLE 526 N+A + G+ + P + + L E + +R E Sbjct: 677 NHYADNKAYTSYRMGWNSGVFPAQINNPKLQNIPFDQAQNFIEPLMRNEAVKAQVRDFGE 736 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT-----------------------MHDIS 562 + E+ +LS+ ++ + Y + + Sbjct: 737 GWIKETLLEQSILSILVLPIFVGGVFWGYVGFDECKEERNWSEDEFSILKAFSNSIAEAI 796 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E Q + KL+ AK+IAE + KS FLA +SHEIRTP+ I+GF E++ Sbjct: 797 ERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETELST----E 852 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y R+ ++L ++ND+LD SKIE+GK+ + P + V +A+SL A EK Sbjct: 853 QQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREK 912 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST--THTSNEEVI 738 + + T +N+P ++ D ++QI N+LSNA+ FT +G +I+ T + E+ Sbjct: 913 GLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETINESSDKAEIA 972 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V D+G+G+ ++EK +PF Q S + GTGLGL ++ +V G + S Sbjct: 973 FEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKL 1032 Query: 799 AKGTLIEII 807 +G+ Sbjct: 1033 GQGSKFYFT 1041 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 69/536 (12%), Positives = 162/536 (30%), Gaps = 36/536 (6%) Query: 73 TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F +P + ID+ G +++E + ++IG ++ I + + Sbjct: 133 AFSINPALMAIS---KIDS-GKYIDVNEAFLSRLEYNRDEVIGKTSGELGIIPFAERDLL 188 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 I +L ++ + TL G+ LYV + + + + ++ Sbjct: 189 IKELYQQGCIRDKELTLITKSGSELYVIFSVDFIETDDQTYLLT------VMVDITGRKI 242 Query: 193 PRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 L K + ++S E G + +F + L + + Sbjct: 243 AEELLKESEDRWSSALECSGNGVWDWDAVTNRVFFSKEWKSMLGYEEHEVGDSLQEWESR 302 Query: 252 ------DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLS 304 + ++ E + + T + + + ++ + + Sbjct: 303 VHPEDWERIQVELQKHFDGQTPVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKVLRVIG 362 Query: 305 HRNHPSLSAYFDEGENLTP----ETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + E + T +D P + +F G+ N F + D+ Sbjct: 363 THTDITEIKKVQEDLSRTRGQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTR-DE 421 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 I L L + VM + + + Sbjct: 422 IIGKTDLDIWPRELALVYMEDDREVMASKKQ-----INKVERVQDKAGG--IWFNTFKTP 474 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 +Q + GI + ++R + ++ + L S+++A D I + + L N Sbjct: 475 VFDQEGNVIGTAGITRDITESRRLEHELIEQRTFLKSLIDAIPDLIFYKDINSLYLGCNH 534 Query: 480 AVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A + F G E+I+ + F++ + + L + + T+ + + Sbjct: 535 AFAHRFIGLSEEEIVGRTDLDFVKDQETARFFIQKDREILLSGETRMNEETITL-ADGSI 593 Query: 539 LSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + L + DI++ K +N+L +KI +S ++ L Sbjct: 594 MELETVKTPFFKGGTVAGLIGVSRDITKRKIAQNQLLIKQKILSNIASATNELLIN 649 Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats. Identities = 53/519 (10%), Positives = 143/519 (27%), Gaps = 36/519 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + + I+ +G + + +G ++ G+ L + D I + + Sbjct: 24 YLFIINENGNAVYANRAAIEKLGYSQEEIQGLSLLLLQPPERRDEAAQIFASMMAGQRDH 83 Query: 145 GKTTLWPIEGTNLYVPIDLA-------ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 L+ +G+ Y+P++ + P++ F I + A Sbjct: 84 CPIPLYTKDGS--YIPVETSVVRGQWQGTPVF-----------FAISKDISQISQANARF 130 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--KDDVLK 255 K ++ S ++ KY ++ +++V T Sbjct: 131 ----SKAFSINPALMAISKIDSGKYIDVNEAFLSRLEYNRDEVIGKTSGELGIIPFAERD 186 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L E Y F + + + Sbjct: 187 LLIKELYQQGCIRDKELTLITKSGSELYVIFSVDFIETDDQTYLLTVMVDITGRKIAEEL 246 Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E+ ++ + + N + + + + Y+ + G ++ Sbjct: 247 LKESEDRWSSALECSGNGVWDWDAVTNRVFFSKEWKSMLGYEEHE----VGDSLQEWESR 302 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNG 432 ++ V L + H ++ + + ++ + + G Sbjct: 303 VHPEDWERIQVELQKHFDGQTPVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKVLRVIG 362 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + + + QL +IL+ ++EG + NR G ++I Sbjct: 363 THTDITEIKKVQEDLSRTRGQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTRDEI 422 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 + K + V E+++ Q + + + + Sbjct: 423 IGKTDLDIWPRELALVYMEDDREVMASKK-QINKVERVQDKAGGIWFNTFKTPVFDQEGN 481 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DI+E ++ +++L + + D + Sbjct: 482 VIGTAGITRDITESRRLEHELIEQRTFLKSLIDAIPDLI 520 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 5/126 (3%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + ++ D + IIN G + NRA + GY E+I + Sbjct: 7 LNEVKASFDTLFNTIEDYLFIINENGNAVYANRAAIEKLGYSQEEIQGLSLLLLQPPERR 66 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEW 564 +++ Q TK+ + + + + + + DIS+ Sbjct: 67 DEAAQIFASMMAG---QRDHCPIPLYTKDGSYIPVETSVVRGQWQGTPVFFAISKDISQI 123 Query: 565 KQEKNK 570 Q + Sbjct: 124 SQANAR 129 >gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis DSM 265] gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM 265] Length = 869 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 158/391 (40%), Gaps = 38/391 (9%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + L ++L + D I ++ + I+ NR L G + + F + Sbjct: 65 ASLRTSENTLATVLANSPDTIVAVDADYSIIYVNRT---LPGCTLPLRVGGSFCEHMSSE 121 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---DI 561 + + + + +E + + + I + + DI Sbjct: 122 GQRLYRQAIDTVFASGQATAIEWKIM--VPGGGSIEVESRIGPSFQDGRVASVVILTSDI 179 Query: 562 SEWKQEKNKLSH---------------------AKKIAEKESSHKSDFLARVSHEIRTPL 600 S KQ + L A + KS FLA +SHEIRTP+ Sbjct: 180 SPRKQLERDLQQSFGELEEFNRRLEESVLKTEQMAAEARDANVAKSQFLANMSHEIRTPM 239 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +IG ++++ +YA I RS +L I+ND+LD SKIE+ + L Sbjct: 240 NGVIGMADLLLETALDT----EQRKYAQTIIRSARSLLKIINDILDFSKIEANRFELEHS 295 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 L + + E ++ + A+E R+ + IP ++ D ++QI +N+L NA+ FT Sbjct: 296 DFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLIGDSGRIRQILVNLLGNAVKFT 355 Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 P GG++ + + + V DTGVG+ +++ +PF Q S + GTG Sbjct: 356 PVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQADGSTARKYGGTG 415 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 LGL ++ + G+ + S P +G++ Sbjct: 416 LGLSISNHLATRMGGRINVESHPGEGSVFSF 446 >gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio africanus str. Walvis Bay] Length = 1935 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 124/835 (14%), Positives = 268/835 (32%), Gaps = 103/835 (12%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D Q ++ SE F V G ++++ + +G ++ Sbjct: 1003 FADIGQRIEADRLLRASEERFRATFEQAAVGIAHR-GPGGVFIQMNDRYCEIVGRSREEL 1061 Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 + ++ D++ +D + + L +T+ + + + + L+ + Sbjct: 1062 LDLKSQDITHPDDVDEDFELTGRLMSGQIDTYSREKRYLRKDDSPA--WVSLSVSLVKGP 1119 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 + E +V + + E + Sbjct: 1120 DGEP--AYAIAVVQDISARKQAEER----AESVAKFPEQNPYPVLRFDRNGTLLYANKAS 1173 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 L + + + + + E L I Sbjct: 1174 RLLVGSPESPLEKTSGDLLETIRQAVRMGQRRDMEVFLDGSAYLLAI-----------AP 1222 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLL 350 + + + + + E + + + Sbjct: 1223 IPDQDYVNVYGMDVTALTRVQNALRESQADLDRAQTVAQTGSWRLDIRRNELIWSDETYR 1282 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 L L D + R+ Sbjct: 1283 LFGIP----HGTPLTYELFLSRVHPDDREQVATKWTAAIQGEAYDIEHRIVV----AGAV 1334 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILE-----ATSD 463 + + + + E + G + D + ++++ E + + +E A D Sbjct: 1335 KWVREVAELEFDGKGELLGGFGTVQDITDRKRMEQELILAKEKAEQRARIEERLAQAAQD 1394 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRK----------------------PFTVFL 501 + E I+ + +L G + + P + + Sbjct: 1395 LSTARDLESIMTVVRTSTRELTGADGVSFVLRDGDKCFYADEDAIEPLWKGQRFPMEMCI 1454 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-------------IKKL 548 + + + D R ++ K ++ +R Sbjct: 1455 SGWVMLNRQTAVIKDIYADPRIPMDTYRPTFVKSLAMVPVRSANPVAAIGAYWAAEHNPE 1514 Query: 549 PFSSCYSLTMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 P + + ++ D++ E +Q + L K++AE+ + KS+FLA +SHEIR Sbjct: 1515 PDAVRFLQSLADLASVAMDNVRLYDELRQWADALEAQKEVAEQATRAKSEFLANMSHEIR 1574 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ I+G +E+ + + + + EY +SG +LDI+ND+LD+SKIE+GK+ L Sbjct: 1575 TPMNGILGMNELALMR----VSDSQAREYLLLAKKSGLALLDIINDILDLSKIEAGKIAL 1630 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716 EP L + + + + L A+EK + I + + P+ ++ D ++Q+ N++SNA+ Sbjct: 1631 DQEPFDLRDVLDSTLKPLSLGADEKGLHIHHTLEDCAPQRLIGDKGRLRQVLTNLVSNAV 1690 Query: 717 HFTPSGG-QIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 F+ G ++ +S + +++ V D G+G+ +L + F Q+ +S I+ Sbjct: 1691 KFSDQGVVRVTVSNNGEASSPDRTQLLFTVADQGIGIPPDKLASIFESFAQLKSSAHIKY 1750 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---------PLYDTSHPH 817 GTGLGL + + +V+ G + S KG+ P +T P Sbjct: 1751 GGTGLGLTICRQLVELMGGSIWAESEVGKGSTFFFTIECDVAQEVEPKAETGRPQ 1805 Score = 111 bits (277), Expect = 7e-22, Method: Composition-based stats. Identities = 69/586 (11%), Positives = 163/586 (27%), Gaps = 66/586 (11%) Query: 32 NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 N T + + D N Q + +E +F D Sbjct: 859 NELATANAALTDLLADVETARNEAQQRARELDAAISSMTEGIMLF-------------DQ 905 Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI---LHIDPNNHIGDLLK-----RQNTW 143 L +I++ G +M+ + L D + +D + D L T Sbjct: 906 DKRLVKINQVAQDMFGYTT-EMLALSLKDRAGPLLAETLDGQPVVFDSLPIMRAFGGETV 964 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + I G + + ++A P+ + G + L + +++ Sbjct: 965 RDMEIKYGIPGRSEPLYASVSAAPVQLPDGRQIGA--IVTFADIGQRIEADRLLRASEER 1022 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKT---EK 258 F E + R + ++ L D + Sbjct: 1023 FRATFEQAAVGIAHRGPGGVFIQMNDRYCEIVGRSREELLDLKSQDITHPDDVDEDFELT 1082 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L++ + + ++ + + + ++ E ++ S +E Sbjct: 1083 GRLMSGQIDTYSREKRYLRKDDSPAWVSLSVSLVKGPDGEPAYAIAVVQDISARKQAEER 1142 Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + ++ P P + +G L YAN + L +E G Sbjct: 1143 AESVAKFPEQNPYPVLRFDRNGTLLYANKA-SRLLVGSPESPLEKTSG------------ 1189 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + ++ + L ++ + P + N + Sbjct: 1190 -DLLETIRQAVRMGQRRDMEVFL------DGSAYLLAIAPIPDQD------YVNVYGMDV 1236 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKP 496 + + L G ++ L + +LFG P + + Sbjct: 1237 TALTRVQNALRESQADLDRAQTVAQTGSWRLDIRRNELIWSDETYRLFGIPHGTPLTYEL 1296 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS- 555 F + + + T + + +I + + +R + + Sbjct: 1297 FLSRVHPDDREQVATKWTAAIQGEAYDIEHRIVVA----GAVKWVREVAELEFDGKGELL 1352 Query: 556 ---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 T+ DI++ K+ + +L AK+ AE+ + + LA+ + ++ T Sbjct: 1353 GGFGTVQDITDRKRMEQELILAKEKAEQRARIEER-LAQAAQDLST 1397 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 33/385 (8%), Positives = 92/385 (23%), Gaps = 13/385 (3%) Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 R + + L ++ S +++ +++ ++ +V S H Sbjct: 759 LRQEDRGRPLFQLASLLESGQEDALAEDCRRALTELASIEKEVRSKPGRTFHVRISPYHS 818 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY------LSHRNHPSL 311 ++ + + + + L + + Sbjct: 819 LANVIEGLVLIFVDITERKAMEEELRQHRDELERLVAERTNELATANAALTDLLADVETA 878 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-DIEIAGGLSTL 369 + + ++ L N + Y + + + L Sbjct: 879 RNEAQQRARELDAAISSMTEGIMLFDQDKRLVKINQVAQDMFGYTTEMLALSLKDRAGPL 938 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L + + R+ + R L + + Sbjct: 939 LAETLDGQPVVFDSLPIMRAFGGETVRDMEIKYGIPGRSEPLYASVSAAPVQLPDGRQIG 998 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + R + + + E + GIA G+ + N ++ G Sbjct: 999 AIVTFADIGQRIEADRLLRASEERFRATFEQAAVGIAHRGPGGVFIQMNDRYCEIVGRSR 1058 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E++L + ++S T + K++ + + + + Sbjct: 1059 EELLDLKSQDITHPDDVDEDFELTGRLMS-GQIDTYSREKRYLRKDDSPAWVSLSVSLVK 1117 Query: 550 FSSC----YSLTMHDISEWKQEKNK 570 + DIS KQ + + Sbjct: 1118 GPDGEPAYAIAVVQDISARKQAEER 1142 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 4/157 (2%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ + ++ +T +++ I + +F ++ +P Sbjct: 710 TELQAKVAELADLNSDIENLFRSTEIATIFLDQRLSIKRFTPRATDIFHL-RQEDRGRPL 768 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555 S L E L + +K + +RI + Sbjct: 769 FQL-ASLLESGQEDALAEDCRRALTELASIEKEVRSKPGRTFHVRISPYHSLANVIEGLV 827 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 L DI+E K + +L + E+ + +++ LA Sbjct: 828 LIFVDITERKAMEEELRQHRDELERLVAERTNELATA 864 >gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 542 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 167/371 (45%), Gaps = 19/371 (5%) Query: 451 VMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PS 507 + +++ + +++ N+ ++ N+A KL+GY E+ L + + Sbjct: 35 EERFRRLIDHV-EMVSVQGYNKNREVVFWNKASEKLYGYSQEEALGMKLEELIIPDYMRE 93 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEW 564 + +++ + +R K+ ++ + D++E Sbjct: 94 AVINHIQDWHDKGIRIPAG-ELDLIHKDGSIVPVYSAHVMQKNPDGSKYMYCIDVDLTET 152 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L AK+ AE S KS+FLA +SHEIRTPL ++G +++K + + Sbjct: 153 KKAHRQLIQAKEQAESASRAKSEFLANMSHEIRTPLNGVLGMLQLLK----SAPEKEKQL 208 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY + +++D+LD+S++E+GK+ + P L E + L + A +K + Sbjct: 209 EYIELAVTGVKRLTTLLSDILDLSRVEAGKLAVDPAPFDLLELMQNLTDLYRPSAQQKGL 268 Query: 685 LIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVI 738 + S I ++ D ++Q+ NI+SNAI FT G I + T T +++ Sbjct: 269 KLNLSLHPTTITKLTGDSSRLQQVLTNIISNAIKFTNDG-IIKVETYPLPHTTAGTTKIL 327 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 V DTG G+ + ++E+ PF Q+ Q +G GLGL + K +V+ G I S Sbjct: 328 FSVSDTGPGIPDSKMEELFSPFIQLSEGYQRTHQGAGLGLSICKQLVELMGGNISIESEL 387 Query: 799 AKGTLIEIIFP 809 GT + + P Sbjct: 388 GIGTTVYLCIP 398 >gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032] gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032] Length = 612 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 87/434 (20%), Positives = 168/434 (38%), Gaps = 32/434 (7%) Query: 392 TCIAASARLHTIQWNRENSLAMT--FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-- 447 H I R+ ++ + + + + Q + + + ++ Sbjct: 200 GIFIFRTITHPISDMRKQAIELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEEAQLMT 259 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E E +L S++ +DG+ N+ G I+ N +L E L P T L Sbjct: 260 EGERKKLSSVIAYMTDGVIATNQNGAIILLNSPALELLNVSRETALEMPITSLLGLEDTH 319 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565 + LE + +L + + + ++D++E + Sbjct: 320 TFEDLVEN----QDSMLLEIE---REDQLSVLRVNFSVIQKEHGKIDGLIAVIYDVTEQE 372 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + +F+A VSHE+RTPLT + + E + G Sbjct: 373 KIDAE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPR 416 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + + ++ +VNDLL +SK +S + E + +S I + E+ + Sbjct: 417 FLSVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWTNFIRFISLVIDRFE-MTKEQHVE 475 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDT 744 + + D + Q+ NI+SNA+ ++P GG I + + V+ V+D Sbjct: 476 FIRNLPQREIYVEIDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEEKSLVLFSVKDE 535 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +++K + F ++ ++ + GTGLGL +AK MV A+ G + S KGT + Sbjct: 536 GIGIPKKDMDKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTV 595 Query: 805 EIIFPLYDTSHPHD 818 P Y+ D Sbjct: 596 TFTLP-YNEEQEDD 608 >gi|145613814|ref|XP_363416.2| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15] gi|145020837|gb|EDK04966.1| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15] Length = 1341 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 129/714 (18%), Positives = 241/714 (33%), Gaps = 81/714 (11%) Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 ++L P+ L P F FG + + N P L K L K + L + Sbjct: 252 SSLITPVSLGLSP----------FPPFGPPNSSTNQNGPSILTKLLTMKDATLDNSQMPI 301 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--------DDVLKTEKYP---LLT 263 ++ K+ F ++ R +S + + L+ + YP LL Sbjct: 302 LAMWKDGSASFPNKAARAMFRTDQSDASEGDALLRRWDVYDEDFTQALEPQDYPISILLR 361 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDE 317 +E + + + + +++ + + ++ + Sbjct: 362 TETPFTGIRIGMYNPDGQKVVFDVLGEAIKDEQTGEFLAGVIYCRDVSPMKQIINNMKEL 421 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + D P + + G + N + T D + G + Sbjct: 422 EDEKFRLICDTMPQLVWTTTPDGRHDFYNDRWYRYTGLTKGDSLG--LGWKHPFHPDDMP 479 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 A + + R + E + + + E G + Sbjct: 480 --EAERRWARSLATGQPYDVEYRCRN--KDGEWRWMLGRALPLRDPETKEIKKWFGTCTD 535 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL---------FGY 487 ++ K E QL +++ I ++ + + + Sbjct: 536 VHESIQAKVTAERLREQLLTVITHAHVTIFTVDNDRNVTML-EGALRWDATGENYRDLEG 594 Query: 488 PVEDILRKPFTVFL-------EQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLL 539 + + + E + IL+ + + E G + + Sbjct: 595 DSKWYVGRNMYEVFNTLNSHLEDGERPRFLEPIEAILAGKSTEDIQEHGFDGRWYRTRFI 654 Query: 540 SLRIIIKKLPF-------SSCYSLTMHDISEWKQEK----------NKLSHAKKIAEKES 582 + +K + D++E + + +L + A++ S Sbjct: 655 PVSAKLKTAEGFSNNAGSIEGVIGVIFDVTELRAREMDLVEQAKERRQLVANEAAAKEAS 714 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS FLA +SHEIRTP+T +IG SE+ EY I RS N +L ++N Sbjct: 715 RLKSQFLANMSHEIRTPITGVIGMSEL----LLDLELGDEEREYGENIYRSANALLAVIN 770 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILA 699 D+LD SK+ESG +++ SL V + ++ A K + ++ A++I +L Sbjct: 771 DILDFSKVESGHLDIEEVQFSLSVIVGDVNKMLSFAAERKNLDFQSEIASDIEEDLVVLG 830 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEK 755 D V+QI N+L+N+I FT G + S E+ V DTG+G+ + Sbjct: 831 DPGRVRQIITNLLTNSIKFTKQG-YVRFSVVKERETPDIIEIKFVVEDTGIGIDAQVRSR 889 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF Q S R GTGLGL ++K +++ G+ + S KGT P Sbjct: 890 LFQPFSQGDASTARRFGGTGLGLTISKNLLELMKGRMTLESAEGKGTTATFWIP 943 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 38/150 (25%), Gaps = 7/150 (4%) Query: 57 QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116 + + N + F + W G ++ + G +G+ Sbjct: 409 SPMKQIINNMKELEDEKFRLICDTMP-QLVWTTTPDGRHDFYNDRWYRYTGLTKGDSLGL 467 Query: 117 RLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNRE 174 + L + + +G + + ALP+ +E Sbjct: 468 GWKHPFHPDDMPEAERRWARSLATGQPYDVEYRCRNKDGE--WRWMLGRALPLRDPETKE 525 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + FG + +RL ++ Sbjct: 526 IK--KWFGTCTDVHESIQAKVTAERLREQL 553 >gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 305] Length = 769 Score = 335 bits (858), Expect = 3e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 597 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL IL + +DG+ ++REG ++ TN ++ G + + + V Sbjct: 251 ALNQEKEQLSRILSSMADGVITLDREGAVMVTNPPANEFIG---AWLYEQEYEVEESGEL 307 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + H ++ + Q E G L + + D++E + Sbjct: 308 PRELQHLFDLVVQEEKEQMGEVDVQGR----SWAILMTPLYDQQHVRGAVAVLRDMTEER 363 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + DF+A VSHE+RTP++ + G+SE I + E Sbjct: 364 LH--------------DKLRKDFIANVSHELRTPISMLQGYSEAIIDGI--ASSEEEKTE 407 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VN+LLD++++E+G + L+ E +S + + Q A E I Sbjct: 408 LAQIIYDESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIK 467 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + NI + AD ++Q+ N++ NAI TP GG++ + V + ++DTG Sbjct: 468 LSGDIEENIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQG-VKVNIQDTG 526 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G++ +L + F + ++ GTGLGL + K +V+A+ GK + S +GT Sbjct: 527 IGISEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFS 586 Query: 806 IIFP 809 P Sbjct: 587 FFLP 590 >gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium GD 1] Length = 1127 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 169/381 (44%), Gaps = 15/381 (3%) Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 E + +K E+ + L+ +AI + +G I N ++ GYP E+++ Sbjct: 400 EERLKEQTSEAKKALQELAEQKFALD-AHSIVAITDVKGTITFVNEKFIEISGYPREELI 458 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 K + + + +S K+ + I + Sbjct: 459 GKNHRLLNSGLHGMEFWNNMYATVSSGK--IWHDEVCNIAKDGHFYWVDTTIVPFMNENN 516 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 Y DI++ K + +L A +IAE+ KS+FLA +SHEIRTP+ +IG + Sbjct: 517 KPKSYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGL 576 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + N + + A+ + S +L ++ND+LD SK+E+ KM L +L + + Sbjct: 577 LMNTKL----DETQRRQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELE 632 Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII-- 726 + + A EK I + ++ I ADL ++QI NI+ NA+ FT G +I Sbjct: 633 TFRDTIAIKAQEKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAVKFTSKGHVLIKA 692 Query: 727 -ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ N +IL++ DTG+G+ N +L++ + F Q+ S + GTGLGL + + + Sbjct: 693 SLTLVDKVNARLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLAIVQKLC 752 Query: 786 DANMGKFYIFSTPAKGTLIEI 806 GK + S G+ + Sbjct: 753 SLMGGKIDVKSDLGHGSTFTV 773 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 21/257 (8%), Positives = 73/257 (28%), Gaps = 21/257 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147 D G + ++E+ + G ++IG ++ L ++ N++ + W+ + Sbjct: 433 TDVKGTITFVNEKFIEISGYPREELIGKNHRLLNSGLHGMEFWNNMYATVSSGKIWHDEV 492 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G +V + +P + N + + I ++ Sbjct: 493 CNIAKDGHFYWVDTTI--VPFMNENNKPKSY--VAIRTDITDKKAAELELIEANEIAEES 548 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEE 266 + K + + P + + L + + + Sbjct: 549 VKAKSEFLATMSHEIR-------TPMNGVIGMLGLLMNTKLDETQRRQASLAEGSAKALL 601 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + DF + + L++ + + ++ + + ++ + + Sbjct: 602 TLINDILDFSKLEAEKMELDNIDFNLRDELETFRDTIAIKAQEKGIEVILDTSDIKTDII 661 Query: 327 DKCPIPFFVYSHGNLFY 343 + G + Sbjct: 662 NA--------DLGRIRQ 670 >gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus thermodenitrificans NG80-2] gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 598 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 156/366 (42%), Gaps = 24/366 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ +REG IL TN + + + Sbjct: 252 ALNQEKEQLASILSSMADGVITFSREGEILITNPPAERFLQ--AWYFEQGNDAETMAP-L 308 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + ++ + Q+ E G T + L + + D++E + Sbjct: 309 PPQVKELFARVVREEKEQSTEVTIQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 364 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 365 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKE 408 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L +E V L V I A EK+I Sbjct: 409 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIE 468 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I D ++Q+ N++ NAI T +GG + + + + V + V+D+G Sbjct: 469 LTAEFRDENIEIAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDG-VTIHVQDSG 527 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+ + G+ + S +GT Sbjct: 528 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFS 587 Query: 806 IIFPLY 811 P + Sbjct: 588 FYLPAH 593 >gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei NCTC 13177] gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei BCC215] gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106a] gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1106b] Length = 771 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|119485163|ref|ZP_01619548.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] gi|119457391|gb|EAW38516.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106] Length = 876 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 107/545 (19%), Positives = 197/545 (36%), Gaps = 54/545 (9%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 A + E + + + G+ Y + + + Sbjct: 336 AERQQAEAALRDSEASLAHAQGIAQVGHWDLVIRGSHLYWSDQLYRILNLEPQS----VP 391 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 L ++ + + + + + + Sbjct: 392 ATLELFLQSVHPEDQNLVRQSVEQVLYHQHPYTIDYRLVLSDGRQRFVCEQTVIS----- 446 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSK 483 +G + + + ++ + + A+ GI I + L N + + Sbjct: 447 --PTRISGTVQDITERKRSEIALRASEERFSKTFAASPIGIGICTFSDECFLDVNESFLR 504 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 G+ ++ P + LE E + + I Sbjct: 505 QLGWKQNQVINATTQQLKLWVNPEEHLQLREVLQQHCQVSNLEIQVYNQASEIRNWLISI 564 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + L + C + +DI+E KQ + L +AK+ AE + KS FLA +SHE+RTPL AI Sbjct: 565 ELIDLGGTECLLMMGNDITERKQA-SLLRNAKEAAEAANRAKSLFLANMSHELRTPLNAI 623 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G+SE + + +G ++ I +G+ +LD++ND+LD SKIE+G+MN H E + Sbjct: 624 LGYSE-LLREDAQDMGLEEFVGDLKNIHVAGHHLLDLINDILDFSKIEAGRMNFHLETYT 682 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG- 722 + + E + + A + + A+NI I D+ V+Q LN+LSNA FT G Sbjct: 683 VATLLWEVETTIAPLAEKNTNTFKIEVADNIDIIHTDITKVRQSLLNLLSNACKFTEQGL 742 Query: 723 GQIIISTTHTSN--------------------------------------EEVILRVRDT 744 + +ST + + VI +V DT Sbjct: 743 VTLKVSTETSPDPTTELPTVPPPDLPHSTHQRDSQITDFPYAPEANTKPITYVIFQVIDT 802 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+GM+ ++ PF Q S + GTGLGL + + + + G+ + S +G+ Sbjct: 803 GIGMSPRQITTVFNPFTQADESTTRKYGGTGLGLTITRKLCELMGGELSVTSKLGQGSTF 862 Query: 805 EIIFP 809 + P Sbjct: 863 IMRLP 867 >gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans NG80-2] Length = 609 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 25/390 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G ++ N A Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEEHDSLILDFSTDEELYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ + + +HD++E ++ + F+A VSHE+RTPLT + Sbjct: 350 IQKEGGLINGLIVVLHDVTEQEKI--------------DRERRQFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + + ++ +VNDLL +SK++S L ++ Sbjct: 396 KSYLEALADGAWQ--DKEITPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + I + I + I D + Q+ NI+SNAI ++P GG Sbjct: 454 FSAYFHKIIDRFE-LTKSDNIRFVRNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I +E+I+ + D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 TITFRVR-ELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +V A+ G + S KGT I PL Sbjct: 572 LVIAHGGTIWAESKEHKGTTIYFTLPLERE 601 >gi|284035078|ref|YP_003385008.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283814371|gb|ADB36209.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1066 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 127/762 (16%), Positives = 240/762 (31%), Gaps = 60/762 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM----RLCD-VSDILHIDP------------NN 131 D G ++ ++ L G A +++G L + V +D Sbjct: 324 TDTKGIIQLVNPALEAMTGYRADELVGQRTTGSLREPVLHQQQLDQLTLELGEAAGQGEE 383 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + + R N + TL EG + V + L Y E G+ I Sbjct: 384 VVARYVARHNFLRLENTLLTKEGRVIPVLSTVTGL--YDEQNELMGY--VDINTDISYRK 439 Query: 192 D-PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 AL + + K G ++ ++ + + + + Sbjct: 440 TVEEALMQAGQRSQLATKAGKLGIWEWNLLTDELILDENFYTLVGIPKRTALARMSDVEP 499 Query: 251 ---DDVLKTEKYPLLTSEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLS 304 L + + P + +F I+ + K LQN S S + Sbjct: 500 LVHPGDLAFFTDKVQAIIQKQQPFEIEFRIISPIDGSTRYMKADGLVLQNESGLSDRMIG 559 Query: 305 HRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359 + D VD F G Y NP++ ++T + + Sbjct: 560 VLRDRTAKRQADHALRVSEQRYRSLVDHLSAVVFQTDAAGMWTYLNPAWEVITGFSVEES 619 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + ++D+ + ++ M Sbjct: 620 LG------RFFLDFIVADDQPKSTSQFDYIVESHKEVLKQVIRYIHKDGGYRWMEVFAQV 673 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTN 478 NQ E G + D + + + + I E + I + + L N Sbjct: 674 SRNQQLEITGVTGTLTDITDRKQAEEALIESERRFREIAENVDEMFWIRDINSPVFLYMN 733 Query: 479 RAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 G VE + P F + + + + + +S + + T + + Sbjct: 734 PVFELYSGLTVEALYEDPLIFARSIIEEDRAAV---VAAFISNEPKSTFLFRII--HPDG 788 Query: 537 KLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 L + I L D++ +++ L + ++ K+ F+ Sbjct: 789 SLRWINARIFLLTDEDGVPVRRLGVATDVTTAIEKEQILEESLAKERALNALKTQFITTA 848 Query: 593 SHEIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 SHE RTPL +II E+IK + N + I + + D++ D L +SK Sbjct: 849 SHEFRTPLASIISSVELIKYYADLEDRSEANTLINRHVLSISKQVMALTDLIADTLTLSK 908 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 +E GK+ + EP + E I+ +KR + + D + + + Sbjct: 909 LEEGKIQIQVEPTDVVALTEELIAFNFSNREDKR-QVGLDVTGAPVPVSVDKKLMAHVLT 967 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+LSNA F+ + ++ I ++ V D G+G+ +L F + N+ Sbjct: 968 NLLSNAFKFSTTSPKVQIRFKRE---SFLISVIDQGIGIPRKDLPHLFGKFFRASNAT-- 1022 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 +GTGLGL + + G I ST GT I P++ Sbjct: 1023 HIKGTGLGLSICLEYITLQNGSIDIASTEGVGTTFTIALPIH 1064 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 66/252 (26%), Gaps = 10/252 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144 + DA G ++ G + +G D + +++ Sbjct: 592 VFQTDAAGMWTYLNPAWEVITGFSVEESLGRFFLDFIVADDQPKSTSQFDYIVESHKEVL 651 Query: 145 GKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G Y +++ A ++ E +G G + +++ Sbjct: 652 KQVIRYIHKDGG--YRWMEVFAQVSRNQQLEITGVTG--TLTDITDRKQAEEALIESERR 707 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDDVLKTEKYPLL 262 F + E + +F +P L V +L + +++ ++ ++ Sbjct: 708 FREIAENVDEMFWIRDINSPVFLYMNPVFELYSGLTVEALYEDPLIFARSIIEEDRAAVV 767 Query: 263 T---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 S E + + L + L + + ++ Sbjct: 768 AAFISNEPKSTFLFRIIHPDGSLRWINARIFLLTDEDGVPVRRLGVATDVTTAIEKEQIL 827 Query: 320 NLTPETVDKCPI 331 + Sbjct: 828 EESLAKERALNA 839 Score = 75.4 bits (184), Expect = 4e-11, Method: Composition-based stats. Identities = 52/422 (12%), Positives = 114/422 (27%), Gaps = 53/422 (12%) Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 V K + ++ + L + Sbjct: 43 ATFHCQRVNKTLAQLLGNSPGELIGKVIDPFVPWIPQAELLSKQLTVLQTGEPWQGRYYY 102 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPE-- 324 PE++ + ++L + + L + + + P L ++ E Sbjct: 103 PEKKRWVQVSLTRLADQVVISFLDVTAYQKPADQPPVHPPARPYLWQDTNQQSGTLAENN 162 Query: 325 -----TVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 +D P + +NP + +T S + + TL Sbjct: 163 QLLQTIIDTSPTSLGLLRPIWQEGAIVDFRALISNPQSVSITGLDSDTLLTR--SMLTLF 220 Query: 371 DA-------PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 K+ D ++ S + + + Q Sbjct: 221 PQFLPNGVFAKMVDVVLTGEAQRFQMMDELAPGSFWGDFSLVRVGGDILFSVNDITRIKQ 280 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATSDGIAIINREGIILSTNRAV 481 E + +++ R+ +R E+ +IL+ G+A + +GII N A+ Sbjct: 281 VEEELR---TANLELEQRVARRTAEVRQLSALQGAILKYVGLGVAATDTKGIIQLVNPAL 337 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--------- 532 + GY ++++ + T L + L L + + Sbjct: 338 EAMTGYRADELVGQRTTGSLREPVLHQ-QQLDQLTLELGEAAGQGEEVVARYVARHNFLR 396 Query: 533 ------TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 TKE +++ + + L Y DIS K + L A + ++ + Sbjct: 397 LENTLLTKEGRVIPVLSTVTGLYDEQNELMGYVDINTDISYRKTVEEALMQAGQRSQLAT 456 Query: 583 SH 584 Sbjct: 457 KA 458 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/269 (9%), Positives = 76/269 (28%), Gaps = 26/269 (9%) Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR-- 399 N + L + I P + + + Sbjct: 48 QRVNKTLAQLLGNSPGELIGKVIDP----FVPWIPQAELLSKQLTVLQTGEPWQGRYYYP 103 Query: 400 -------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + + ++ + + + DT + Sbjct: 104 EKKRWVQVSLTRLADQVVISFLDVTAYQKPADQPPVHPPARPYLWQDTNQQSGTLAENNQ 163 Query: 453 QLCSILEATSDGIAIINR---EGIILST-----NRAVSKLFGYPVEDILRKPFTVFLEQN 504 L +I++ + + ++ EG I+ N + G + +L + Q Sbjct: 164 LLQTIIDTSPTSLGLLRPIWQEGAIVDFRALISNPQSVSITGLDSDTLLTRSMLTLFPQF 223 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 P+ + + +++ Q + + + + ++ +++DI+ Sbjct: 224 LPNGVFAKMVDVVLTGEAQRFQMMDELAPGS---FWGDFSLVRVGGD--ILFSVNDITRI 278 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVS 593 KQ + +L A E+ + ++ + ++S Sbjct: 279 KQVEEELRTANLELEQRVARRTAEVRQLS 307 Score = 38.5 bits (88), Expect = 5.4, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 23/166 (13%) Query: 451 VMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 L E + G+A + N+ +++L G +++ K F+ Sbjct: 15 ESLLELWFETSEQGVAFLTPVYLELDQIATFHCQRVNKTLAQLLGNSPGELIGKVIDPFV 74 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + + +L + +++ + +L ++ D+ Sbjct: 75 PWIPQAELLSKQLTVLQTGEPWQGRYYYPEKKR-----WVQVSLTRLADQ--VVISFLDV 127 Query: 562 SEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604 + +++ ++ A+ ++++ +S LA E L II Sbjct: 128 TAYQKPADQPPVHPPARPYLWQDTNQQSGTLA----ENNQLLQTII 169 >gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. G11MC16] Length = 609 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 25/390 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G ++ N A Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEEHDSLILDFSTDEELYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ + + +HD++E ++ + F+A VSHE+RTPLT + Sbjct: 350 IQKEGGLINGLIVVLHDVTEQEKI--------------DRERRQFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + + ++ +VNDLL +SK++S L ++ Sbjct: 396 KSYLEALADGAWQ--DKEITPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + I + I + I D + Q+ NI+SNAI ++P GG Sbjct: 454 FSAYFHKIIDRFE-LTKSDNIRFVRNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I +E+I+ + D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 TITFRVR-ELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +V A+ G + S KGT I PL Sbjct: 572 LVIAHGGTIWAESKEHKGTTIYFTLPLERE 601 >gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing [Geobacter sulfurreducens KN400] Length = 589 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 181/389 (46%), Gaps = 24/389 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + R + ++E+ + + ++ G A I+ G+I NR ++ + G +++ F+ Sbjct: 38 ELRDIRAQLELSLERYANLYHFAPVGYATIDAVGVIADANRTLAGMIGADCREMVGLLFS 97 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555 F+ ++ + +L R+ + S + + +++ L Sbjct: 98 DFVHKDDVTSFVSHLARC--TGQREGVTGEFRLSGRNGISVDVQLSSMPLTPPGGRVSCR 155 Query: 556 LTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + DI+ K+++ +L AK+ AE S KS+FLA +SHEIRTP+ ++G + Sbjct: 156 TAITDITMIKRKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQ 215 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 ++ + G RS + +L +VND+LD S+IE+ KM P L V Sbjct: 216 LVLDTELG----DEQRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPFDLTACV 271 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + A+ ++ A K + + ++P ++ D ++Q+ +N++ NA+ FT G ++ + Sbjct: 272 NSAVEILAFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDRG-KVEV 330 Query: 728 STTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + + + VRDTG+G+ E E+ + F Q+ + R GTGLGL L Sbjct: 331 TAARAERQSDPLRTAIRISVRDTGIGIAPQERERLFRVFSQVDGACNRRFGGTGLGLALT 390 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + +V+A G + S +G+ I PL Sbjct: 391 RDIVEAMGGAIDVESQSGQGSTFTITIPL 419 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 42/361 (11%), Positives = 99/361 (27%), Gaps = 25/361 (6%) Query: 41 KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW-NIDAHGYLKEIS 99 E P D+ +Q +D + + + + + + + IDA G + + + Sbjct: 18 AEMPEADTEKQQPASDAPSQELRDIRAQLELSLERYANLYHFAPVGYATIDAVGVIADAN 77 Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT-NLY 158 L IG +M+G+ D D + + L + G T + + G + Sbjct: 78 RTLAGMIGADCREMVGLLFSDFVHKD--DVTSFVSHLARCTGQREGVTGEFRLSGRNGIS 135 Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218 V + L+++P+ S + + ++ E + S + Sbjct: 136 VDVQLSSMPLTPPGGRVSCRTA---ITDITMIKRKERELNESREELCWAKEAAEDASRAK 192 Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHT 277 E S + P + + + + + + + + DF Sbjct: 193 SEFLANMSHEIRTPINGVLGMLQLVLDTELGDEQRHCLEMAKRSADALLRLVNDILDFSR 252 Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS------------LSAYFDEGENLTPET 325 I + + L + E L+ +A + L Sbjct: 253 IEARKMVFESRPFDLTACVNSAVEILAFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVL 312 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 V+ G + + D + A +S ++ + Sbjct: 313 VNLIGNAVKFTDRGKVEVTAARAERQS-----DPLRTAIRISVRDTGIGIAPQERERLFR 367 Query: 386 L 386 + Sbjct: 368 V 368 >gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 586 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 176/394 (44%), Gaps = 26/394 (6%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 I + ++ E ++ ++++ + E +L +ILE +G+ + + ++ Sbjct: 213 IAVKSTDELGELAQVMNDMAARIEQQLDR--ISSERNRLDAILEGMGEGVMVTDEAAVVT 270 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A +FG + ++ + + + L + + S + Sbjct: 271 LVNPAFCSMFGATADVQGKQLLEITRHPDLYASCREVLAKRQEQR------RELNLSGGK 324 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 L+ + + + HDIS K+ + DF+A VSHE Sbjct: 325 ATLVHW-VPLLEGVKLRGVVAVFHDISAMKK--------------ADQIRRDFVANVSHE 369 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTP+T I G++E + + R + I + + D+V DLL +S++ESG++ Sbjct: 370 LRTPVTVIKGYAETLLSGDL-ADDPGRRDRFLGIIQNHADRLSDLVRDLLALSELESGEL 428 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + + V +++AV +A+ L+ A EK I++ + +AD + Q+ +N+L NA Sbjct: 429 AMQPQKVLIEDAVRQALLLLSPRAEEKGIVMEL-GSCAPVSAMADRGRLDQVLINLLENA 487 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I ++ GG+I + E V + VRD G+G+ +L + + F ++ ++ GTG Sbjct: 488 IKYSGQGGRIQVEAA-EEGEMVRVSVRDNGIGIPEKDLPRLFERFYRVDEARSRERGGTG 546 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL + K +V A+ G ++ ST KG++ P Sbjct: 547 LGLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLP 580 Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 30/325 (9%), Positives = 80/325 (24%), Gaps = 23/325 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D + ++ G A + G +L +++ + ++L ++ + Sbjct: 263 TDEAAVVTLVNPAFCSMFGATAD-VQGKQLLEITRHPDL--YASCREVLAKRQEQRRE-L 318 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + L G + G+V V + + + +++ Sbjct: 319 NLSGGKATLVHWVPL-----------LEGVKLRGVVAVFHDISAMKKADQIRRDFVANVS 367 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + +V K + +++ + + +A + L + L E Sbjct: 368 HELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHADRLSDLVRDLLALSELESGE 427 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 L Q I E S +++ + L ++ Sbjct: 428 LAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPVSAMA----DRGRLDQVLINL 483 Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G + + + D G+ + Sbjct: 484 LENAIKYSGQGGRIQVEAAEEGEMVRVSVRD---NGIGIPEKDLPRLFERFYRVDEARSR 540 Query: 388 RSDRTCIAASARLHTIQWNRENSLA 412 T + S H + + + Sbjct: 541 ERGGTGLGLSIVKHIVMAHGGSVFV 565 >gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter propionicigenes WB4] Length = 912 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 97/433 (22%), Positives = 184/433 (42%), Gaps = 44/433 (10%) Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-----------CSILEAT 461 + F EK + E + + + + + E+ S++EA+ Sbjct: 205 LVFQTGEKEKRAAELIIADKELVFQTEEKEKRETAAKELEAFSYSLKLASQYSRSLIEAS 264 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 D + IN EG I N A K+ G E+I+ F + + + ++ + Sbjct: 265 RDPLFTINLEGKITDLNNASVKITGMSREEIIGTDFFDYFTEPDKAK--EVYKDVFANGF 322 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------- 573 + L + + + DI++ K+ + +L+ Sbjct: 323 VTDFPLTIRDGKLTDVLFNGSVYKDDRGNVQGVVVVARDITDQKKIETQLNEAIVFAEMA 382 Query: 574 -------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 + +IAE K FL+ +SHEIRTP+ AI+GF++V+ Sbjct: 383 TEIAEIAKTKAESSTQIAETAVKAKQQFLSNMSHEIRTPMNAIVGFTKVLLKSELTA--- 439 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + EY + I SG+ ++ ++ND+LD++K+++GKM P ++ ++S + L + Sbjct: 440 -KQKEYLSAIKMSGDALIVLINDILDLAKVDAGKMVFEKIPFKMELSISAMLHLFETKIL 498 Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNE 735 EK + + + IP +L D + QI LN++SNA+ FT G +I +S + Sbjct: 499 EKNLKLVVDYDKTIPDVLVGDPVRLHQIILNLMSNAVKFTGKG-KIYVSVRLLSNNDDSA 557 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V ++DTG+G++ ++ K + F Q + GTGLGL + K +V++ G ++ Sbjct: 558 SVQFSIKDTGIGISEEKIGKIFENFQQASSGTSRLYGGTGLGLAIVKQLVESQGGSIHVT 617 Query: 796 STPAKGTLIEIIF 808 S +G+ Sbjct: 618 SEINEGSTFSFTL 630 Score = 70.4 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 32/366 (8%), Positives = 83/366 (22%), Gaps = 26/366 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G + ++++ G K+IG D + + + + + Sbjct: 26 IDIDGKITDMNQAKVTITGVDRDKLIGSNFFDYFTEPN--KAKAVYKRVFAKGSVKDCPL 83 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + L + G + L + Sbjct: 84 TFCSVDKKL-TDVLFNGSVYTDAEGNVLGA--LLVARDVEEQKWAIELRNANKELVIANK 140 Query: 209 EIKKGHSSVEKEKYDI------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 E+ ++ EK ++ Q+ R + + E + +K + Sbjct: 141 ELLFLNNEKEKRAAELILANKELVFQNKEKEKRAAELIIADKELAYQAGEKMKRAAELKI 200 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 +E E K+ + K + Sbjct: 201 ADKELVFQTGEKEKRAAELIIADKELVFQTEEKEKRETAAKELEAFSYSLKLASQYSRS- 259 Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ++ P F + G + N + + +T + I T + A Sbjct: 260 --LIEASRDPLFTINLEGKITDLNNASVKITGMSREEIIG------TDFFDYFTEPDKAK 311 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + ++ + + F + + + D + Sbjct: 312 EVYKDVFANGFVTDF-----PLTIRDGKLTDVLFNGSVYKDDRGNVQGVVVVARDITDQK 366 Query: 442 INKRKM 447 + ++ Sbjct: 367 KIETQL 372 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 6/146 (4%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + E S++EA+ D + I+ +G I N+A + G + ++ F + + + Sbjct: 6 KHESQYASSLIEASLDPLITIDIDGKITDMNQAKVTITGVDRDKLIGSNFFDYFTEPNKA 65 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565 + + + K+ + + + L D+ E K Sbjct: 66 K--AVYKRVFAKGSVKDCPLTFCSVDKKLTDVLFNGSVYTDAEGNVLGALLVARDVEEQK 123 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLAR 591 +L +A K + FL Sbjct: 124 WA-IELRNANKELVIANKELL-FLNN 147 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 45/202 (22%), Gaps = 17/202 (8%) Query: 35 ETEKSKKENPCHDSF--------EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT 86 E EK E D E+ + E+ S + L S+ + R FT Sbjct: 211 EKEKRAAELIIADKELVFQTEEKEKRETAAKELEAFSYSLKLASQYSRSLIEASRDPLFT 270 Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 I+ G + +++ K G ++IG D D + + Sbjct: 271 --INLEGKITDLNNASVKITGMSREEIIGTDFFDYFTE--PDKAKEVYKDVFANGFVTDF 326 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + G + Sbjct: 327 PLTIR---DGKLTDVLFNGSVYKDDRGNVQGV--VVVARDITDQKKIETQLNEAIVFAEM 381 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228 EI + + + I Sbjct: 382 ATEIAEIAKTKAESSTQIAETA 403 >gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus trichosporium OB3b] Length = 597 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 113/564 (20%), Positives = 213/564 (37%), Gaps = 19/564 (3%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L P+ L + + L + + Sbjct: 4 LSVTWPPVARDWIERLAQSRRALSRAERARRVAFLAPRLALAAAVLLAAPLWVVIAGAPS 63 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + + + L A + L + Sbjct: 64 LGESLLFALAQLPLLSVVALLRFDDLRLAQAASAAGWL-----------IFAGACAAVGG 112 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + A M + + +LA Sbjct: 113 ASAAALAPFIAMALVEAALALDMALLGAVAAGAGLLTLAAGGALALALAAPLVAYATALA 172 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 R++ + + +L + EA + I + G + +++G D++ Sbjct: 173 AGAIRLARLDAGETDRRAAELALLGEAAGELIIGFDEGGAVSRLVGDRHRIYGLETADLM 232 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-------GSTKEEKLLSLRIIIK 546 + + +++ ++ + E G E S + Sbjct: 233 GRGLFHRVHVADRPAFLKLVSDTIATNAPACAELRLRIGSAPGAGEYAEPVFNSFEARSR 292 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + D++ ++ ++ L+ A++ + S+ K+ FLA VSHE+RTPL AIIGF Sbjct: 293 PAGDGAGVICFLADVTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGF 352 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ +++ P + EYA I SG +L +VN +LD+SKIESG M + EP S E Sbjct: 353 SDMLASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQE 412 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + + ++QL A + RI + +A+ +P I+ D R+ KQI +N+LSNA+ FTP+ G++ Sbjct: 413 LADQCVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVA 472 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + + + + V D+G+G+ +L + PF Q + EGTGLGL + + +V Sbjct: 473 VRL-YPDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVG 531 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810 + G + S P +GT + + PL Sbjct: 532 LHGGAIAVESAPQRGTCVTVRLPL 555 >gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16] Length = 620 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 91/432 (21%), Positives = 181/432 (41%), Gaps = 37/432 (8%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 R+ +Q + ++ + V+ + E E +L S Sbjct: 212 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N+ +D + KP T L + + Sbjct: 268 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKDAVSKPITKILGLDDDVSAQELI--- 324 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574 +Q + T +E +L + + F S +HD++E ++ +N+ Sbjct: 325 ---GNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 377 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + F++ VSHE+RTPLT++ + E + + + ++ Sbjct: 378 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 425 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--------QLYANEKRILI 686 ++ ++NDLL +S+++ G + + E V+ ++ +S ++ + +K+ I Sbjct: 426 ERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSI 485 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + N + D + Q+ NI++NAI ++P GG I + T + N ++IL + D G+ Sbjct: 486 KRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQN-QIILSISDQGL 544 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK + S KG+ I Sbjct: 545 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 604 Query: 807 IFPLYDTSHPHD 818 P S D Sbjct: 605 SLPFEPMSEEDD 616 >gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 816 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 115/703 (16%), Positives = 241/703 (34%), Gaps = 59/703 (8%) Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174 L L+ TW + + P Y + + Sbjct: 166 QTLRQSLPNYDPRQRPWYRQALQAGQFTW--GPIYSQFSDRQQAI---AGSQPFYDGSGK 220 Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 G +V+ + + L K + + +G + + + + + P Sbjct: 221 LLG-----VVNTDLSLAQLTQFLQDLPKSYPEDSFVPRGMALILDQAGKLVAAAHHDPAR 275 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 ++ + + SE Q + + + ++ L Sbjct: 276 HTSAPPGHNSDPFLQTTIQQLSSPKAEFESETLKFNFQGQQQFLIVLPFQQQPGLNWLIA 335 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 L + +L + I ++ + N + + Sbjct: 336 LVIPEANALELVQQNLHTTLLTFLFSLCLSILLGLYISRWISYP--ILQLNRAAEAI--A 391 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 +S G + + + + Sbjct: 392 RSATAHRPTNGFDQPVKVQGIRELE--------------------------------VLA 419 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREG 472 + A Q E ++ R+ +R + +L IL A ++ I + + + Sbjct: 420 HSFNQMARQLQSAFTSLRTVNEQLEQRVTQRTAALRQAEAELRGILAAMTELILVFDTQE 479 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 +L + P +L +P L + + + ++L+ T++ + Sbjct: 480 RLLKIVPTSTDQENQPPASLLYQPLPTVLPSPQVEAIRASMRQAIALEQTCTVDYSLVVG 539 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 +E + I + S DI+E + + +L+ + ++ + KS F++ Sbjct: 540 DRE---VWYSACISPINGDS-VIFVARDITEQHRAEEELARTLEKEKQLNELKSRFVSMT 595 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE RTPLT I+ +E + G PR +++ I + + +++N +L +SK E+ Sbjct: 596 SHEFRTPLTTILSSTE-LLQSHSHKWGEPRDLKHLERIHTAVERMTELLNGVLVLSKAEA 654 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G++ H + ++L++ + + +Q A E ++L S N ++ D + ++ I N+L Sbjct: 655 GRLEFHPQSLNLEQFCRDLVEDLQSSAPEHQLLF--SLTGNCTQVEMDEKLLQHILPNLL 712 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI ++P GG + T T + V +++D G+G+ +L + F + N Sbjct: 713 SNAIKYSPRGGSVRFEVTCT-STSVCFQIQDQGIGIPAADLPHLFESFHRAKNVGN--IS 769 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL + K VD + G + S GT +I PL T H Sbjct: 770 GTGLGLAIVKKSVDLHGGTISVTSEVGIGTTFIVILPLQLTVH 812 >gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 773 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 117/507 (23%), Positives = 219/507 (43%), Gaps = 49/507 (9%) Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 Y + S + Y+ + + G + ++ ++ + + R ++ Sbjct: 274 YWSRSMYDMLGYEPCETMLSFGEVDEIIH----PEDGDLFELANRIVAREIDHID-QVFR 328 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 ++ + M + PE + GI + + R + E ++L + +E + Sbjct: 329 MRHADGQWVWMRARAQVMDPEAPE-IQLIGIAVDVTEQRHLALRSEAADLRLRTAIENIN 387 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 + + + ++ N + G D+ P + + + + + Sbjct: 388 ESFVLWDSAQRLIMCNSKYQQDNGLSDRDV--MPGVTRVSLEERMLAFASERRLANTNGP 445 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-- 580 Q + + L + + + DI++ K + KL +++ Sbjct: 446 QG-GATFERQLSDGRWLQVNELKTR---DGGIVSVGSDITQIKLHQEKLVDSERRLMATI 501 Query: 581 ---------------------------------ESSHKSDFLARVSHEIRTPLTAIIGFS 607 + KS+FLA +SHE+RTPL AIIGFS Sbjct: 502 HDLSLARRAEEERSRELVDLNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGFS 561 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E+++ FGPLG+ RY EYA I+ SG +L ++ND+LD+SKIE+G+ +L E + L Sbjct: 562 ELMEQGLFGPLGSSRYEEYATDINSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPL 621 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +SE + +V L A +K I + T A+ + + AD R++KQI +N+LSNA+ FT GG I + Sbjct: 622 ISETVRVVSLQAAQKAITVETRIADAL-TLFADRRAIKQIVINLLSNAVKFTGQGGHISV 680 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 ++ ++L + D G G+ L K +PF Q+ N G+GLGL +++++ + Sbjct: 681 R-ARNTSGALVLTIEDNGCGIPKEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAEL 739 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G I ST GT++ + P+ + Sbjct: 740 QGGALKIRSTEGVGTIVSVRIPVKKAT 766 >gi|298247623|ref|ZP_06971428.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550282|gb|EFH84148.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 775 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 111/755 (14%), Positives = 239/755 (31%), Gaps = 65/755 (8%) Query: 79 IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138 F + ID + + G ++ G + + + +L+ Sbjct: 61 RVLPGAFFF-IDDTETIMYANASAQAITGATLEELRGTPFWRGAPQ--LVSSELYHAMLQ 117 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 + + T ++ + L+ G H R + Sbjct: 118 ARQIQASTEVEYCSPVTRTWLHVYLSP--------TVGGLT--LQFHEVRAPAQRKR--- 164 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKT 256 + + L + + I +V D + Sbjct: 165 --EDEIRTLVDAIPQLVWIAGPDGYITYNNQRLIDYLAMTLEQVEGDGWMVRVHPDDHQR 222 Query: 257 EKYPLLTSEESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYLS----HRNHP 309 + T+ ++ P + + + + +N ++ Sbjct: 223 VRQAWQTAIQTGTPYEVEHRLQDGTSEAYHWFLVRGVPQRNAQGMILHWVGTCTNIDEQK 282 Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 F E + + P + ++S G L Y N + +T+ + L Sbjct: 283 RTEQQFKESQESFRLLAETVPQLVWTMWSDGRLDYTNQRYRDVTQ---ANLNLEGDDLWR 339 Query: 369 LLDAPKLSDNNAIKPVMLYR---SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 P+ + + +ML + RL + ++ Sbjct: 340 QFVHPE----DIERTLMLRHQVLKNGNIYENEYRLRDGRT--GEYRWYLARALPVRDEAG 393 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + G + D + + + Q +IL +S I I+ N ++ Sbjct: 394 QIVKWFGTGTDIDDQKRIEEALRQSQEQ-ANILMNSSIIGINIIEGEQIVEANDTFLRMT 452 Query: 486 GYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 GY ED+ ++ ++ EK + K+ L + + Sbjct: 453 GYTREDLRAGNINWMRITPPEYRALTQQVHQQLTVQQYITPYEKEYVC--KDGSRLPVLV 510 Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 L + D S K+ + + K F++ SHE++TPLTA Sbjct: 511 GAVVLQHFPYQSIAFVLDNSARKELEQR--------------KDAFISMASHELKTPLTA 556 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 + ++ + +R + ++ S + ++ +LLD+SKI++G++ E V Sbjct: 557 LKMQAQ-LARKRLERQSPHEAATALSRVEGSIQQLERLIGELLDVSKIQAGRLEYLQEIV 615 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 LD + E +Q + I++R + + D + Q+ +N++SNAI ++P Sbjct: 616 DLDTLLHEVTDTMQQISTTHTIVVR---GATLCSLEGDKDRLGQVFINLISNAIKYSPGA 672 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + I + + +RVRD G G+ + +K + F ++ Q G G+GL + Sbjct: 673 ETVEIDLSASPEA-ATIRVRDHGQGIPQEQRDKIFERFYRVSGPNQKAIPGLGMGLYIVA 731 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 +V + G + S KG+ + PL + P Sbjct: 732 EIVRHHGGTITVESEVGKGSTFSVTLPLKRSLKPE 766 Score = 43.5 bits (101), Expect = 0.17, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 30/191 (15%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 R + L ++L I+ I+ N + + G +E++ PF Q Sbjct: 47 RDLLPSRETLITMLRVLPGAFFFIDDTETIMYANASAQAITGATLEELRGTPFWRGAPQL 106 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 S + H + + + +E + + L + + +L H++ Sbjct: 107 VSSELYHAMLQARQIQASTEVEYCSPVTR---TWLHVYLSPT----VGGLTLQFHEVRAP 159 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 Q K + EIRT + AI + + N R I Sbjct: 160 AQRKRED-----------------------EIRTLVDAIPQLVWIAGPDGYITYNNQRLI 196 Query: 625 EYANYIDRSGN 635 +Y Sbjct: 197 DYLAMTLEQVE 207 >gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus sp. WCH70] Length = 608 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 164/387 (42%), Gaps = 25/387 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G I+ N A Sbjct: 234 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALN 293 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 294 ILNVSRETVLSSSIIDVLGIGDQYTFETLLEERDSLILDFSTDEGLYILRAS-----LSV 348 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ + + +HDI+E ++ + +F+A VSHE+RTPLT + Sbjct: 349 IQKESGLINGLIVVLHDITEQEKI--------------DRERREFVANVSHELRTPLTTM 394 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + ++ +VNDLL +SK++S L+ V+ Sbjct: 395 KSYLEALAEGAWQ--DKAIAPRFIEVVQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVN 452 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 E + I + + I I D + Q+ NI+SNAI ++P GG Sbjct: 453 FSEYFHKVIDRFE-LTKSENITFVRKIPKEAIFIEIDKDKITQVLDNIISNAIKYSPQGG 511 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +I +E+I+ V D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 512 KITFRVR-ELADEIIVSVSDEGVGIPKGDLAKVFERFYRVDKARSRKLGGTGLGLAIAKE 570 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V A+ G + S KGT I PL Sbjct: 571 VVIAHGGTIWAESKEHKGTTIFFTLPL 597 >gi|288941103|ref|YP_003443343.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896475|gb|ADC62311.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 1370 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 120/760 (15%), Positives = 261/760 (34%), Gaps = 55/760 (7%) Query: 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 R WN P+ + + + L H+ ++ + Sbjct: 121 RLVWNTPDSHTHTS-----PELLQGLRDANQSRHVQRIGPYLDDSGQTHLDYVVPLETDE 175 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRLD 201 + + + +S++ E FR G ++++ + + P A + Sbjct: 176 EHTPLVVLNANFEDRLCPTVNGQHDFSQSGESFLFRRDGDQVLYLCPLRHQPDAALRFRL 235 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 S + + L + V+ + K D+ + Sbjct: 236 PLTSDRLQAARQVRGEFPLGELTVGYDYRGVLGLGVAQAVAGTDWFVVAKLDLAEIWASV 295 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L +L ++ +Q + + + + E E Sbjct: 296 ALEIVLIALVGVLMSISVISGARVLRQRHQ----LALVAATQEAQTERLNALEQLRENEE 351 Query: 321 LTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 L +D P + + +L + I D+ + Sbjct: 352 LLQILIDCTPASLAMLDREMRYLIVSRQWLQDIGMLEHNLIGQR------YDSVCPNLPE 405 Query: 380 AIKPVMLYRSDRTCIAASARL-----HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 K + A ++W R + ++ Sbjct: 406 HWKAAHARGLAGEVVKFEAEHVECADGRLRWKRLEVHPWRMADDQVGGITLLTEDVTELK 465 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 ++ R ++++++ L +++ + D + + + +G+ L+ N +L+G I+ Sbjct: 466 ETELALRASQQRLQDNRELLRTLIRSIPDLVWLKDTQGVYLTCNARFERLYGASESQIIG 525 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 K F+ + ++ ++ E+ + +++I + + Sbjct: 526 KTDYDFVPRTLADFFRTNDLAAIAAGGPRSNEEELTF-AGDGHRELVQVIKAPVYDTRGT 584 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH------------------KSDFLARV 592 DI++ K+ + +L+ ++ E+ + KS+FLA + Sbjct: 585 LIGVLGIGRDITQLKRAEAELALHRRHLEELVAERTAELTAARAEAERLARAKSEFLANM 644 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHEIRTP+ A++G + +++ + E I +G +L I+ND+LD SKIES Sbjct: 645 SHEIRTPMNAVLGLAYLLERMDLPDAAH----ELTRKIHLAGRNLLGILNDILDFSKIES 700 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNI 711 G + + P LDE + +++ + A +K + + + + +L D + Q+ +N+ Sbjct: 701 GHIEIERAPFQLDEVLDGLATIMTVTAGDKPLELVIRPPDCLDCTLLGDALRLSQVLINL 760 Query: 712 LSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 SNA+ FT SG + + S V VRDTG+G+ + +PF Q S Sbjct: 761 TSNAVKFTASGSVEVGVDLLERTASEIRVRFSVRDTGIGIDEATQSRLFQPFAQADASTT 820 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 R G+GLGL +++ +V+ G+ + S P +G+ Sbjct: 821 RRFGGSGLGLVISRRLVELMGGRLELDSRPGEGSTFRFEL 860 >gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides BS1] gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides BS1] Length = 608 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 94/472 (19%), Positives = 191/472 (40%), Gaps = 25/472 (5%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQ 404 + L + + + A LS + + L ++ Sbjct: 142 AVPLGREEPFAILRFAKPLSDIRLLEAELRKGIEGALFWSLLLSLVFGVLTALFLSRPLR 201 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + + + + + ++M + ++ + + Sbjct: 202 VIADAADNILHGDYASRLEINSDDEIGRLARAVNFMSDEMKRMNQQEEWFKAVFSSIREA 261 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 I + + G I N A +LF ++ K ++ + L + + Sbjct: 262 IIVTDANGNIKLGNPAACRLFNLD-CALMIKTGAGHKATDSR--LFELLERMTASGSTVE 318 Query: 525 LEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 E++T+ + + E++L + + I K M+DI++ + Sbjct: 319 KEEVTVMTDRGERVLQVSAMPIIKRKIPEGTVFVMNDITKLLNLE--------------R 364 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 + DF++ VSHE+RTPLT+I G++E + N + + I + + ++ND Sbjct: 365 MRRDFVSSVSHELRTPLTSITGYTETLLEGAIDDAENAK--HFLQIILQESERLTALIND 422 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +LD+SKIESG++ F PV L V + + L +K I++R ++P + AD Sbjct: 423 VLDLSKIESGRIEYTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIPQDLPYVNADKGY 482 Query: 704 VKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++ + N+L NAI + GQI+IS + + V + V+D G+G+ +L + + F + Sbjct: 483 LELVLRNLLDNAIKYVAEQNGQIMISASTVDD-MVRVEVKDNGIGIPRKDLGRIFERFYR 541 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + ++ GTGLGL + K +V A+ GK + S G+ + P+ S Sbjct: 542 VDKARSRAVSGTGLGLSIVKHIVLAHKGKVEVRSRLNLGSQFSFVIPIAGQS 593 >gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 609 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 92/390 (23%), Positives = 162/390 (41%), Gaps = 25/390 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G ++ N A Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ F + + +HDI+E ++ + F+A VSHE+RTPLT + Sbjct: 350 IQKEGGFVNGLIVVLHDITEQEKI--------------DRERRQFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + + ++ +VNDLL +SK++S L ++ Sbjct: 396 KSYLEALADGAWQ--DKDIAPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + I + I I D + Q+ NI+SNA+ ++P GG Sbjct: 454 FSAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I S+ E+I+ V D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 TITFRVRKLSD-EIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +V A+ G + S KGT I PL Sbjct: 572 VVLAHGGTIWAESKEHKGTTIYFTLPLERE 601 >gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus selenitireducens MLS10] Length = 608 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 22/373 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 E E +L S+L +DG+ +REG I+ NR +L GY E+ + L Sbjct: 253 EAHATTEGERRKLSSVLTHMTDGVIATDREGQIILMNRRAEELTGYSQEEAIGYDLVGML 312 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 ++ + L L +I K+ + +HD+ Sbjct: 313 NLAHFMKLSDLYNMDDPILLDFEHHDEELILEAN-----FSVIEKENGRKNGLIAVLHDV 367 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ + + + +F+A VSHE+RTPLT++ + E + + + Sbjct: 368 TEQERIEQE--------------RREFVANVSHELRTPLTSMKSYLEALLDGAVN--DSD 411 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ + ++ +VNDLL +SK+++ ++ V++ + I ++ + Sbjct: 412 VAPQFLQVTSNETDRMIRLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQ 471 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + I R + ++ D + Q+ N++SNA+ ++P GG I I+ +I+ V Sbjct: 472 ENIQFRRRLPDVPLSVMGDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKE-RLIVSV 530 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +D GVG+ L F ++ ++ GTGLGL +AK +V+ + G ++ S KG Sbjct: 531 KDEGVGIPKENLPHVFDRFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSSDWGKG 590 Query: 802 TLIEIIFPLYDTS 814 T P+ + Sbjct: 591 TTFFFSLPVNHEA 603 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 12/113 (10%), Positives = 31/113 (27%), Gaps = 12/113 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKT 147 D G + ++ + G + IG + ++ +K + + Sbjct: 279 TDREGQIILMNRRAEELTGYSQEEAIG---------YDLVGMLNLAHFMKLSDLYNMDDP 329 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 L E + + ++ I N +G ++H + Sbjct: 330 ILLDFEHHDEELILEANFSVIEKENGRKNGL--IAVLHDVTEQERIEQERREF 380 >gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 609 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 162/390 (41%), Gaps = 25/390 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G ++ N A Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ F + + +HDI+E ++ + F+A VSHE+RTPLT + Sbjct: 350 IQKEGGFVNGLIVVLHDITEQEKI--------------DRERRQFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + + ++ +VNDLL +SK++S L ++ Sbjct: 396 KSYLEALADGAWQ--DKDIAPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + I + I I D + Q+ NI+SNA+ ++P GG Sbjct: 454 FSAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I ++ E+I+ V D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 TITFRVRKLAD-EIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +V A+ G + S KGT I PL Sbjct: 572 VVLAHGGTIWAESKEHKGTTIYFTLPLERE 601 >gi|218676825|ref|YP_002395644.1| hypothetical protein VS_II1065 [Vibrio splendidus LGP32] gi|218325093|emb|CAV26933.1| Hypothetical protein VS_II1065 [Vibrio splendidus LGP32] Length = 1688 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 98/378 (25%), Positives = 177/378 (46%), Gaps = 15/378 (3%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ QL ++L ++ +++ E + N +LFG D+ V Sbjct: 950 ATEALKKAQEQLYNMLNSSPIAASVVFEE-KVRYANDTAKRLFGVEGLDLD--SIDVASI 1006 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--D 560 ++ SV + E++ + + + + + + D Sbjct: 1007 HDSLSVRDDVHKELMLNGK--VVNRELVLRKSDGTRFVALVSYYLFELDGEIATLFWAFD 1064 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE K+ +L K+ A+ S KS+FLA +SHEIRTP+ AIIG S + G + N Sbjct: 1065 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISN 1120 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y + RSG+ +L I+ND+LD SKIE+G++ + P + I L++ AN Sbjct: 1121 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1180 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738 EK++ + S + ++ D + Q+ LN++ NAI FT +G + ++ + + + Sbjct: 1181 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTETGSVSLTVALVESDDNSLT 1240 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+++ L K + F Q ++ R GTGLGL +++ +V A G+ + S Sbjct: 1241 MKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVGS 1300 Query: 797 TPAKGTLIEIIFPLYDTS 814 +G+ + L +S Sbjct: 1301 VFGQGSEFSFVLTLSRSS 1318 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 8/157 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIE 361 + + + ++ PI V + YAN + L + +D I+ Sbjct: 943 QISIANDATEALKKAQEQLYNMLNSSPIAASVVFEEKVRYANDTAKRLFGVEGLDLDSID 1002 Query: 362 IAGGLSTLLDAPKLS------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 +A +L + + ++L +SD T A + + + E + Sbjct: 1003 VASIHDSLSVRDDVHKELMLNGKVVNRELVLRKSDGTRFVALVSYYLFELDGEIATLFWA 1062 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + E + + + ++ + Sbjct: 1063 FDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHE 1099 >gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21] gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21] Length = 1323 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 102/455 (22%), Positives = 190/455 (41%), Gaps = 53/455 (11%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 I ++RE ++ E + E + E + RI ++ + +L I++ Sbjct: 651 RRIDYHREREQLLSLQAQELEEKVNER------DQEIMQRRIAEQALRDSERRLADIIDF 704 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----------------FTVFLEQN 504 D ++N +G +L NRA + G ED+L K + L Sbjct: 705 LPDPTFVVNAQGAVLIWNRAAEEFTGAKAEDMLGKDSDECGVPFYGMRRPLLLHMVLTPW 764 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDI 561 + ++ + E ++ ++ + + DI Sbjct: 765 RAEQIKPLYVRVVVEGDKIIGESPVRSVSRP-HAYTMGMAAPLYDSEGKVIAVIESVRDI 823 Query: 562 S-----------EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + +L AK+ AE + KS FL+ +SHE+RTPL AI Sbjct: 824 TELKEGEEELKRHRDHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAI 883 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 +G+++++K Q + + G +L ++ND+LD+ KIE+ KM + Sbjct: 884 LGYAQILKRQDN---LTDTQRQQLEIVRGCGEHLLSLINDVLDMGKIEAQKMEIEALSFD 940 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722 L + + S+ ++ A+EK + R ++PR + D R +KQ+ LN+LSNA+ +T G Sbjct: 941 LSALLGQVFSIAKVKADEKDLGFRYEELTSLPRAVRGDQRKLKQVLLNLLSNAVKYTRRG 1000 Query: 723 GQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPL 780 ++ + + S+ + + DTG+G+ +L +PF Q Q EGTGLGL + Sbjct: 1001 -RVTVRVDYELSSGTFVCEITDTGIGIAPDKLNIIFEPFVQLADAGQVR--EGTGLGLSI 1057 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + +V G+ + S P G+ + PL + + Sbjct: 1058 TRRLVTLMQGEVAVESEPGFGSTFRVELPLPEVTE 1092 Score = 44.6 bits (104), Expect = 0.063, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 21/190 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 T+ ++A G + + + G A M+G + + + ++ W Sbjct: 709 TFVVNAQGAVLIWNRAAEEFTGAKAEDMLGKDSDECGVPFYGMRRPLLLHMVLT--PWRA 766 Query: 146 KT-----TLWPIEG---------TNLYVPIDLA---ALPIYSRNREFSGFRGFGIVHVNR 188 + +EG ++ P A P+Y + V Sbjct: 767 EQIKPLYVRVVVEGDKIIGESPVRSVSRPHAYTMGMAAPLYDSEGKVIAV--IESVRDIT 824 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + KR L + V KE+ ++ +Q M +++ + Sbjct: 825 ELKEGEEELKRHRDHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAIL 884 Query: 249 HKDDVLKTEK 258 +LK + Sbjct: 885 GYAQILKRQD 894 >gi|168703335|ref|ZP_02735612.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1244 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 107/736 (14%), Positives = 207/736 (28%), Gaps = 42/736 (5%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 ++ G A + + M L D+ + + G G Sbjct: 391 FLAVNPAAVAKYGYTADEFLAMTLRDIRPAEDAARLPGAVAAAGGKLSDSGVWRHRLKSG 450 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + I L R + + +++ E Sbjct: 451 DLIQARIYSHPLEFRGRPARLV------MAQDVTAQLAAEHALRESEEQLRRTLEASATG 504 Query: 215 SSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + QS P + +D + Sbjct: 505 LWSWDLTGGTIAWQSDQVPASFHPGGAFDGTAHGVDRVLHPEDRERVWAAARRAVAARDL 564 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPE 324 + N + L + + + Sbjct: 565 FECEFRVVFPNGGGRWVAARGRAAYADDGRPVRMLGTITDVTARKTAELELQRTRAVLQK 624 Query: 325 TVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 VD P F+ + G NP ++ D + + Sbjct: 625 LVDHSPALIFMTGADGRYLLFNPRCEAALGVRAADVLGRTPA------EAFPAPLARKIA 678 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 + T + + + + P + + G+ + R Sbjct: 679 ERDGHALSTGVPQVSEETVRTPDGPTHFSTVRFPVSGPDGRVIALG--GVAIDITARRRA 736 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + + + + + I + +R+G TN + G + + + + Sbjct: 737 EDDLRAREELFRLLADESPHIIWVSDRDGRPEYTNARWREYSGRTADQAREQGWAGAVHP 796 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHD 560 + E + E + K + + D Sbjct: 797 DDREHYRRSWREARARGGEH--EAQVRLKRADGVYRWFLARAKPVGGPGGTRRWFGAATD 854 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I E KQ + L + K FLA ++HE+R PL I + ++ G L + Sbjct: 855 IEEQKQREASL-------LRADVQKDAFLATLAHELRNPLAPIADVAHLL---GSGGLDD 904 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 R E + L+ +V+DL D+S++ G + L EPV+L + + A+ + Sbjct: 905 GRLREAGALLAGQVRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIR 964 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + + + D + Q+ N+L+NA +TP GG + ++ E ++R Sbjct: 965 AAGHRLSLERRSEPVIVRGDAVRLAQVVSNLLTNAAKYTPPGGNVWLALD-RDGTEAVVR 1023 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799 VRD G G+ L + F Q Q+ G G+GL LA+ +V+ + G S P Sbjct: 1024 VRDDGAGIDPALLPRVFDMFVQERRLQEQAPGGLGVGLTLAQQIVELHGGAIDARSAGPG 1083 Query: 800 KGTLIEIIFPLYDTSH 815 +G I PL T+ Sbjct: 1084 RGAEFVIRLPLAATNE 1099 Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats. Identities = 37/328 (11%), Positives = 86/328 (26%), Gaps = 8/328 (2%) Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L L + E + ++ + + Sbjct: 44 LPAGLADWLRRRGPAGQSVEVPGSEGRVYAARRVTWSAASGPPGAVVVVRDLTDQKRAQQ 103 Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLL 370 D +D+ V GNL NP+ + + Y+ V+ A T + Sbjct: 104 AADRTTAYLRAALDRLADGVVVSDAAGNLLDLNPAAVRMHGYERVEQARRNLAALRDTFV 163 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 AP L R R L + + + + Sbjct: 164 LAPVGGPPLRFDEWPLSRLLRGEDVGVCELTVRRTDVPVERVVQYSGTRVPGPAGGTELV 223 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + D R + ++ + + + +D + + G +L NR G Sbjct: 224 VVTSHDVTDRRRAEDELRASEQRFRAFADHAADAFFLHDDRGTVLDVNRQALASLGCERA 283 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 +++ F TP + + + + +T+ T ++ + + I+ Sbjct: 284 ELVGLSPLAFDPDLTPQQLANNSERLNAG---ETIACETRHRHTSGRVFPVELRIRPFTA 340 Query: 551 SSCYSLT--MHDISEWKQEKNKLSHAKK 576 D++ + L +++ Sbjct: 341 GGRRLAVTLARDVTAQVAARAALRASEE 368 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 45/494 (9%), Positives = 107/494 (21%), Gaps = 48/494 (9%) Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 +++G + D L+R+ G++ P +Y + Sbjct: 34 ELVGREANACLPAG-------LADWLRRRGP-AGQSVEVPGSEGRVYAARRVTWSAASGP 85 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 +V + R + V ++ Sbjct: 86 PGAVV------VVRDLTDQKRAQQAADRTTAYLRAALDRLADGVVVSDAAGNLLDLNPAA 139 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---------- 281 + +V A D P ++ Sbjct: 140 VRMHGYERVEQARRNLAALRDTFVLAPVGGPPLRFDEWPLSRLLRGEDVGVCELTVRRTD 199 Query: 282 -------QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 QY+ + G + E D FF Sbjct: 200 VPVERVVQYSGTRVPGPAGGTELVVVTSHDVTDRRRAEDELRASEQRFRAFADHAADAFF 259 Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 ++ G + N L + + + GLS L P L P L + Sbjct: 260 LHDDRGTVLDVNRQALASLGCERAELV----GLSPLAFDPDL------TPQQLANNSERL 309 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 A + + + + + + + Sbjct: 310 NAGETIACETRHRHTSGRVFPVELRIRPFTAGGRRLAVTLARDVTAQVAARAALRASEES 369 Query: 454 LCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + E + + + E L+ N A +GY ++ L + + Sbjct: 370 YRLLFECNPLPMWVYHTETLAFLAVNPAAVAKYGYTADEFLAMTLRDIRPAEDAARLPGA 429 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + + + + K L+ + + + D++ ++ Sbjct: 430 VAAA---GGKLSDSGVWRHRLKSGDLIQARIYSHPLEFRGRPARLVMAQDVTAQLAAEHA 486 Query: 571 LSHAKKIAEKESSH 584 L +++ + Sbjct: 487 LRESEEQLRRTLEA 500 Score = 79.3 bits (194), Expect = 3e-12, Method: Composition-based stats. Identities = 35/382 (9%), Positives = 79/382 (20%), Gaps = 23/382 (6%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143 + A G + +G A ++G + G L Sbjct: 632 LIFMTGADGRYLLFNPRCEAALGVRAADVLGRTPAEAFPAPLARKIAERDGHALSTGVPQ 691 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T+ +G + + P+ + G I + ++ Sbjct: 692 VSEETVRTPDGPTHFSTVRF---PVSGPDGRVIALGGVAI--DITARRRAEDDLRAREEL 746 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPL 261 F L + V + R ++ A D + + Sbjct: 747 FRLLADESPHIIWVSDRDGRPEYTNARWREYSGRTADQAREQGWAGAVHPDDREHYRRSW 806 Query: 262 LTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + + + Sbjct: 807 REARARGGEHEAQVRLKRADGVYRWFLARAKPVGGPGGTRR-WFGAATDIEEQKQREASL 865 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 D F L NP L V + +GGL + Sbjct: 866 LRA----DVQKDAFLATLAHELR--NP----LAPIADVAHLLGSGGLDDGRLREAGALLA 915 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 ++ D + R ++ E I P ++ Sbjct: 916 GQVRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIR--AAGHRLSLE 973 Query: 440 TRINKRKMEIEVMQLCSILEAT 461 R + + ++L ++ Sbjct: 974 RRSEPVIVRGDAVRLAQVVSNL 995 Score = 39.6 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 11/131 (8%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 ++A +D + +++ +L N + L G P +++ + + + L + L Sbjct: 1 MDAVADAVFVLDHRERVLFANAEAAALAGPPAAELVGR--------EANACLPAGLADWL 52 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 G E ++ + R + + + D+++ K+ + Sbjct: 53 RRRGPAGQSVEVPG--SEGRVYAARRVTWSAASGPPGAVVVVRDLTDQKRAQQAADRTTA 110 Query: 577 IAEKESSHKSD 587 +D Sbjct: 111 YLRAALDRLAD 121 >gi|260426521|ref|ZP_05780500.1| sensory box histidine kinase/response regulator [Citreicella sp. SE45] gi|260421013|gb|EEX14264.1| sensory box histidine kinase/response regulator [Citreicella sp. SE45] Length = 858 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 112/535 (20%), Positives = 206/535 (38%), Gaps = 19/535 (3%) Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL--- 349 Q + + L+ E + L P F Sbjct: 61 QADVEVLQFRLAVAEARERPDALPEVRLRFDILYSRM-TTLQNGRLFRLLQTVPDFAAPQ 119 Query: 350 -LLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 ++ + I G L P L++ A+ + ++ A L + R Sbjct: 120 ERVSAFLDQSIPLIDGPDDALYAKLPGLAEGAAMAGADVRALSLAGLSTFAELSDSRRER 179 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + L ++ + R +EI +L +I+E + D I + Sbjct: 180 VSGLLGYMAGALVTLFLGLSLLALTMFRLFRVARRRADAIEIAGARLRTIVETSPDAIVV 239 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY----LTEILSLDLRQ 523 + +G++ N A ++ GY +D+ KP + + Sbjct: 240 TDEDGLVRGFNTAAERMLGYGRDDVFGKPARQLFAPTELPDERTATLFAFADERRRPTPE 299 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 ++ +L I + Y + DIS WK+ + +L+ A+ A Sbjct: 300 ERRFEISLRDRDGRLFPAEFSIDRAGTDDPLYVAYIRDISRWKEVEEQLTEARDRALAGE 359 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHE+RTPL ++G ++++++ R + + SG L+L++VN Sbjct: 360 RSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEEL----TERQCAMIDRTEASGRLLLELVN 415 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADL 701 D+LD++K E+GKM P SL V + V+ A+ R + + D Sbjct: 416 DVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALSWRWVGPEGDWVDGDA 475 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKP 759 R ++Q+ LN++ NA+ FT G + I + + + LRV D+G+G+ +L + + Sbjct: 476 RRLRQVLLNLVGNALKFTRDG-TVEIEAEYLDDVGNALELRVIDSGIGIREEDLARIFRD 534 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F + +S GTGLGL +A+ G S P +G+L + P+ T+ Sbjct: 535 FETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLFWVRLPMPQTA 589 Score = 42.3 bits (98), Expect = 0.33, Method: Composition-based stats. Identities = 30/376 (7%), Positives = 78/376 (20%), Gaps = 22/376 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--------RQ 140 D G ++ + + +G + G + + P+ L Sbjct: 240 TDEDGLVRGFNTAAERMLGYGRDDVFGKPARQLFAPTEL-PDERTATLFAFADERRRPTP 298 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + +L +G + R + + Sbjct: 299 EERRFEISLRDRDGRLFPAEFSI------DRAGT-DDPLYVAYIRDISRWKEVEEQLTEA 351 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + K +V + ++++ + + Sbjct: 352 RDRALAGERSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEELTERQCAMIDRTEASGRLLL 411 Query: 261 LLTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L ++ L + E H T++ + LS R + Sbjct: 412 ELVNDVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALSWRWVGPEGDWV 471 Query: 316 DEGENLTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 D + ++ G + + + I+ G+ A Sbjct: 472 DGDARRLRQVLLNLVGNALKFTRDGTVEIEAEYLDDVGNALELRVIDSGIGIREEDLARI 531 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D + + T + + + A + MPQ Sbjct: 532 FRDFETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLFWVRLPMPQTARG 591 Query: 435 PEDVDTRINKRKMEIE 450 + ++ Sbjct: 592 ATEDVPVPESAELPQR 607 >gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 769 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 134/688 (19%), Positives = 260/688 (37%), Gaps = 56/688 (8%) Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220 + A I+ + + + + ++ + D A + G S V Sbjct: 96 VFADAADIFD-SGDITQAQARLARYLPQDRLDDGAFVLLVQASGKVFAATTAGLSHVGSN 154 Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 D F + S R ++ + + + E+ + Sbjct: 155 VGDFFPEVSA--IRRFGDRAGVIETTIGGVPHYAEITLMGNAGGFVVAATSLEEVGRLWR 212 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS 337 + ++ Y + D E + + + + Sbjct: 213 EELALNVTLFAGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFD 272 Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 F+ + S + D G + L+ D+ + + + Sbjct: 273 FENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIAKGHSGQV 328 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ++ ++ + + M + M GI + + ++ +L Sbjct: 329 D-QIFRMRHAGGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLAD 386 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E TS+ + ++ ++ N + +G P ++ + + + Sbjct: 387 AIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIV---NAAAARPVIERR 443 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--- 573 ++ + T +E+ L + + DI+ K+ + +L Sbjct: 444 IADADGSGYSRTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESER 500 Query: 574 --------------------------------AKKIAEKESSHKSDFLARVSHEIRTPLT 601 K+ AE + KS+FLA +SHE+RTPL Sbjct: 501 RLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLN 560 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+GFSE+++NQ FGPLG+ +Y EYA I SG +L+++ND+LD+SKIE+G + LH E Sbjct: 561 AILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHRER 620 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + L + E++ + A EK I+I + + ++AD R++KQ+ LN+LSNA+ FT + Sbjct: 621 IDLVPLIEESLRFTAIPAAEKNIVIEQRICSGM-ALMADRRAMKQVLLNLLSNAVKFTDN 679 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 GG+I + T V + + DTG+G+ L K +PF Q+ + G+GLGL ++ Sbjct: 680 GGRIAVRTRRVD-GAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAIS 738 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +++ + G+ I S A GT+I + P Sbjct: 739 RSLTALHGGRMKIRSREAVGTVISLRIP 766 Score = 44.2 bits (103), Expect = 0.081, Method: Composition-based stats. Identities = 21/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + +G M + + ++H D I + + ++ Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIAKGHSG 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I S + GI + D++ Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + + + V + + Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIVNAAAARPVIERR 443 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ ++ + ++ + S + L Sbjct: 444 IADADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503 Query: 323 PETVDKC 329 D Sbjct: 504 ATIGDLS 510 >gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102] Length = 1297 Score = 334 bits (857), Expect = 4e-89, Method: Composition-based stats. Identities = 116/732 (15%), Positives = 231/732 (31%), Gaps = 81/732 (11%) Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE- 218 D P+ + + + I A + + H + + Sbjct: 431 WWDSRITPVRDASGQVV--QLVAISRDITDFKQAEAERLQAELVLRSAHVQLESALAAGS 488 Query: 219 ---------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + P + D + Sbjct: 489 VYTWRWNIPADRVVVNAAFAHLFNVDPADATTAGLPIEFFINSIHESDRPRVSAAIQQAI 548 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---EN 320 + HT + + + S + + + + Sbjct: 549 ETGEEYTAEYRVHTATGEERWLTARGQVEYDAAGNSIAFPGALADITDHKQAEAAIAADL 608 Query: 321 LTPETVDKCPIPFFVYSHGNLFY------------ANPSFLLLTKYKSVD-DIEIAGGLS 367 + + + + + Y A+ + + + D + G Sbjct: 609 RDTQLLHGLSVQLTNETDIQVLYDEIMATAIVLTGADAGTVQILDTATQDLVLLATQGFE 668 Query: 368 TLLDAPKLSDNNAIKP---VMLYRSDRTCIAASARLHT---------------------- 402 L N + + L +RT I Sbjct: 669 PNLTEYFHRVNASSNTSCGIALKNGNRTFIDFDVPESEDPDGSLRIHVEAGYFFGQSTPL 728 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGI----EPEDVDTRINKRKMEIEVMQLCSIL 458 I + + ++ E + + + ++ R + + + + Sbjct: 729 IARSGKPIGMVSTHWQEYRQPSDRELRFLDLLARQAADLIEQRQTQAALRDSENRFRMAI 788 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E+ G N L + +FG P + + F L N + + L Sbjct: 789 ESAQLGTWDWNLIANQLIWDEGCKAMFGLLPQAESSIEVFFAGLHPNDRQRLEQAVQWTL 848 Query: 518 SLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + + ++ + + + + T+ +I+E K+ + + Sbjct: 849 NPASSGKYDVEYRTIGIEDGVERWIAARGQAYFDAGGNPQRFVGTVLNITEQKRIEAERE 908 Query: 573 H-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 A+ A++ + K +FLA +SHE+R+PL I+G+ +++N G L PR E Sbjct: 909 QLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRLLQN---GKLDLPRQTE 965 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I+R+ L ++ DLLDIS+I GK+ L P+SL +S AI V+L A K I Sbjct: 966 ALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIETVRLAAEAKNIQ 1025 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I + + + D ++Q+ N+L+NA+ FTP GGQ+I+ +RV DTG Sbjct: 1026 ILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQLDQ-LAQIRVSDTG 1084 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLI 804 G+ L + F Q ++ + G GLGL + + +V+ + G S +G + Sbjct: 1085 KGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKAESLGEDRGAIF 1144 Query: 805 EIIFPLYDTSHP 816 + P+ + P Sbjct: 1145 TVQLPVIQQTIP 1156 Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 97/364 (26%), Gaps = 35/364 (9%) Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + P S + L H L + T+ + Sbjct: 275 APLLKPLAIESYVATPFFDSNGTPLGLLGVMHGQPLENVHLAESLLTVFADRIAI----- 329 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 E E L +D + + + Y +P L L + I Sbjct: 330 ELERQQTEITLRESEELKQRILDSSRDCIKVLTLNSEIVYISPGGLCLLEIDDPTSILNT 389 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 + + D + + + L T + + Sbjct: 390 IWVDR----WQGEDYENAQAALAAATLGNIGQFQGYLVTAK---GTPKWWDSRITPVRDA 442 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGII----LS 476 + + I + D + + + + L S LE+ ++ I + Sbjct: 443 SGQVVQLVAISRDITDFKQAEAERLQAELVLRSAHVQLESALAAGSVYTWRWNIPADRVV 502 Query: 477 TNRAVSKLFGYPVEDIL--RKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 N A + LF D P F + ++ ++ + + + T E Sbjct: 503 VNAAFAHLFNVDPADATTAGLPIEFFINSIHESDRPRVSAAIQQAIETGEEYTAEYRVHT 562 Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 +T EE+ L+ R ++ + + + DI++ KQ + A + L Sbjct: 563 ATGEERWLTARGQVEYDAAGNSIAFPGALADITDHKQAE--------AAIAADLRDTQLL 614 Query: 590 ARVS 593 +S Sbjct: 615 HGLS 618 >gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 893 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 185/436 (42%), Gaps = 30/436 (6%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT------------RINKR 445 L I++ + + + + E+ + +++DT R + Sbjct: 174 FHLWVIRYLGQLAHYASSVDLEQPPPDSIVLRAPSHHTDELDTITDALLGMHHKIRTVYQ 233 Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQ 503 + L ++LE+T +N + + + + L GYP E L + Sbjct: 234 DFKSREESLRTLLESTRAVGWRLNLTKKRLEYISPQIYTLLGYPPESWLDLAVWQSRIHP 293 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTM 558 + + IL+ ++ + + + +R + L + Sbjct: 294 DDRLATLTSMERILAQPREHSM--EYRMLAADGRTVWVRDMSSPLSGDKPGTFTHLGGFL 351 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS K + +L + AE S KSDFLA +SHEIRTPL AIIG EV+ + Sbjct: 352 LDISAQKDLERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTT- 410 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 YA ++ + +LD++ND+LD+SKIE+G+ L P L + + + + Sbjct: 411 ---EQKHYAMVSQQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTIT 467 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---N 734 AN++ + I + + +P ++ DLR V+Q+ N+L NAI FT G I + T Sbjct: 468 ANQQGLPIECNLPDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQG-LIRVETERLETPVA 526 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + + V+DTG+G+ + F Q S R G+GLGL ++K +V+ GK + Sbjct: 527 SWIRISVKDTGIGIAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGV 586 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ P+ Sbjct: 587 DSQLGKGSHFFFTLPV 602 Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 44/402 (10%), Positives = 106/402 (26%), Gaps = 25/402 (6%) Query: 87 WNIDAHG-YLKEISEELPKTIGNYAFKMIGMR-LCDVSDILH-IDPNNHIGDLLKRQNTW 143 W ++ L+ IS ++ +G + + + + +L + Sbjct: 254 WRLNLTKKRLEYISPQIYTLLGYPPESWLDLAVWQSRIHPDDRLATLTSMERILAQPREH 313 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G ++V D+++ + F+ GF + D + ++ Sbjct: 314 SMEYRMLAADGRTVWVR-DMSSPLSGDKPGTFTHLGGFLL--DISAQKDLERRLRTTTER 370 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKVSSLTEYYAHKDDVLK 255 K +V + P + + +++ AH L Sbjct: 371 AESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTTEQKHYAMVSQQAAHTLLDLI 430 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-----YLSHRNHPS 310 + L E + + + ++ + N E L H Sbjct: 431 NDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTITANQQGLPIECNLPDTLPTLMHGD 490 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 L NL + L S++ ++ + I S + Sbjct: 491 LRRVRQVLFNLLGNAIKFTEQGLIRVETERLETPVASWIRISVKDTGIGIAQEK-QSLIF 549 Query: 371 DAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 DA SD + + + L S R ++ + S +P Sbjct: 550 DAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGVDSQLGKGSHFFFTLPVTARWDVL 609 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E + + ++ ++LE + + Sbjct: 610 EPLYPPPATLLQQQRILLIHSDVENRDRMQTLLEQAGATVIL 651 >gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp. 1_1_14] Length = 931 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 102/519 (19%), Positives = 202/519 (38%), Gaps = 29/519 (5%) Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361 + D E L P +Y G L N L + ++ D+ Sbjct: 422 TDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEIFGVENKQDVI 481 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + D + ++ +R + + A H + + ++ + + Sbjct: 482 GVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRD---TIDIYTKVSKLY 538 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477 + I ++ + ++ I + G A ++NR+G I Sbjct: 539 DNEGNFNGYILISIDNTEQIDAMNRIRDFENFFLLISDYAKVGYAKLNLLNRKGYAIKQW 598 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536 + + + P+ D++ + + + E+ + + ++ + K+ Sbjct: 599 YKNLGEEEDTPLADVVG--VYRNMHPEDRERIFDFYREVRKGNRKHFQGEMRICRPGKKN 656 Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + +R+ + +DI+E K+ + +L A+ AE KS FLA Sbjct: 657 EWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEKELILARDKAEMMDRLKSAFLAN 716 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL AI+GFS+++ + EY + + +L+L +++D+LD+SKIE Sbjct: 717 MSHEIRTPLNAIVGFSDLLVDTE----NIEERREYIQIVKENNDLLLQLISDILDLSKIE 772 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +G V ++ + + +Q+ E + + RI++D + Q+ N Sbjct: 773 AGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDPHLAECRIISDRNRLHQVISNF 831 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++NAI FT G I + E + V+DTGVG+ + F ++ + Sbjct: 832 VNNAIKFTSEGS---IRVGYKQKGEELEFYVQDTGVGIDAESQAHIFERFVKLNSFVH-- 886 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL + +++V+ GK + S P KG+ P Sbjct: 887 --GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 PE G+ + + R ++ SI G+ I +++G ++ N ++ Sbjct: 412 PEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEI 471 Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542 FG +D++ F +++ L + E+ + + + + Sbjct: 472 FGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRDTIDIY 531 Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575 + KL + + Y L D +E N++ + Sbjct: 532 TKVSKLYDNEGNFNGYILISIDNTEQIDAMNRIRDFE 568 >gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC 100599] Length = 607 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 169/395 (42%), Gaps = 30/395 (7%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVS 482 + + Q G+ + R+ + ++ E + L IL +DG+ NR G I+ NRA Sbjct: 231 DDEIGQLGMAFNHMTLRLQEAILQQEEEREKLAGILSNMTDGVIAANRNGQIILFNRAAE 290 Query: 483 KLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + D + R+ L M+ Y E + L KEE +L Sbjct: 291 DMLQVTMADVLLKRRTLYDLLGLPPEDEMSLYAQE-------EPLIIEMTLPNKEEVILR 343 Query: 541 LRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + + D+++ ++ + + +F+A VSHE+RT Sbjct: 344 VTFTPLQHDSKKMGGIIAVVADVTDQQRLE--------------QQRREFVANVSHELRT 389 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PLT I + E + + + ++ +VNDLL +S+ +S + LH Sbjct: 390 PLTTIKSYVEALLDGAV--EEPELSQRFLKVTSSETERMIRLVNDLLQLSRFDSQGVRLH 447 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 + L+ + A +++ ++ + + + +P + DL ++ Q+ N+LSNAI + Sbjct: 448 CKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVYIDLDAINQVLDNLLSNAIKY 507 Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 TP GG +++ V + + DTG+G+ + +L++ + F ++ ++ GTGLG Sbjct: 508 TPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLKRIFERFYRVDKARSRGQGGTGLG 567 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 L +A+ +V A+ I S GT + P Sbjct: 568 LAIARELVQAHGADIEITSEWNVGTTVTFWVPFAQ 602 >gi|86145818|ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222] gi|85836517|gb|EAQ54646.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222] Length = 1656 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 98/378 (25%), Positives = 177/378 (46%), Gaps = 15/378 (3%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ QL ++L ++ +++ E + N +LFG D+ V Sbjct: 918 ATEALKKAQEQLYNMLNSSPIAASVVFEE-KVRYANDTAKRLFGVEGLDLD--SIDVDSI 974 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--D 560 ++ SV + E++ + + + + + + D Sbjct: 975 HDSLSVRDDVHKELMLNGK--VVNRELVLRKPDGTRFVALVSYYLFELDGEIATLFWAFD 1032 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE K+ +L K+ A+ S KS+FLA +SHEIRTP+ AIIG S + G + N Sbjct: 1033 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISN 1088 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y + RSG+ +L I+ND+LD SKIE+G++ + P + I L++ AN Sbjct: 1089 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1148 Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738 EK++ + S + ++ D + Q+ LN++ NAI FT +G + ++ + + + Sbjct: 1149 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTETGSVSLTVALVESDDNSLT 1208 Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + V DTG+G+++ L K + F Q ++ R GTGLGL +++ +V A G+ + S Sbjct: 1209 MKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVGS 1268 Query: 797 TPAKGTLIEIIFPLYDTS 814 +G+ + L +S Sbjct: 1269 VFGQGSEFSFVLTLPRSS 1286 Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 45/157 (28%), Gaps = 8/157 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIE 361 + + + ++ PI V + YAN + L + +D I+ Sbjct: 911 QISIANDATEALKKAQEQLYNMLNSSPIAASVVFEEKVRYANDTAKRLFGVEGLDLDSID 970 Query: 362 IAGGLSTLLDAPKLS------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + +L + + ++L + D T A + + + E + Sbjct: 971 VDSIHDSLSVRDDVHKELMLNGKVVNRELVLRKPDGTRFVALVSYYLFELDGEIATLFWA 1030 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + E + + + ++ + Sbjct: 1031 FDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHE 1067 >gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42] gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium etli CFN 42] Length = 767 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 133/652 (20%), Positives = 251/652 (38%), Gaps = 41/652 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 D A + G S V D F + S R ++ + Sbjct: 123 DRLDSGAFVLLVQASGKVFAATTAGLSHVGSNVGDFFPEVSA--IRRFGDRAGVIETTIG 180 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + + E+ + + ++ Y + Sbjct: 181 GVPHYAEITLMGNAGGYIVAATSLEEISQVWREELALNVTLFAGISSILLVILYAYYTQV 240 Query: 309 PSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 D E + + + + F+ + S + D G Sbjct: 241 KRARDADDIFLESNLRVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTLGFG 300 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + L+ D+ + + ++ ++ ++ + + M + Sbjct: 301 EAARLMH----PDDGGLYEIARAIANGHSGQVD-QIFRMRHAGGHYVWMRARAQVIRSNS 355 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 M GI + + ++ +L +E TS+ + ++ ++ N + Sbjct: 356 GR-MHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQEA 414 Query: 485 FGYPVEDILRKPFTVFL-----EQNTPSVMNHYLTEILSLDLRQTLEKIT---LGSTKEE 536 +G P ++ + + + +++ E+ T++ Sbjct: 415 YGLPDSVLVPGTERSIVNAAAARPVIERRVADADGSGRTTEVQLADERWLQINERRTRDG 474 Query: 537 KLLSLRIIIKKL--------PFSSCYSLTMHDISEWKQEKN-----------KLSHAKKI 577 +S+ I + T+ D+S +Q K+ Sbjct: 475 GRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLELQKAELSTANANYQAEKER 534 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS+FLA +SHE+RTPL AI+GFSE+++NQ FGPLG+ +Y EYA I SG + Sbjct: 535 AEAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHL 594 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+++ND+LD+SKIE+G + LH E + L + E++ + A EK I+I ++ + + Sbjct: 595 LNVINDILDMSKIEAGHLKLHRERIDLVPLIEESLRFTAIPAAEKNIVIEQRISSGL-TL 653 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD R++KQ+ LN+LSNA+ FT GG+I + T V + + DTG+G+ L K Sbjct: 654 TADRRAMKQVLLNLLSNAVKFTDDGGRIAVRTRRVD-GAVFVTIADTGIGIPRSALSKIG 712 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF Q+ + G+GLGL +++++ + G+ I S A GT+I + P Sbjct: 713 QPFEQVQSQYAKSKGGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRIP 764 Score = 45.8 bits (107), Expect = 0.032, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 54/244 (22%), Gaps = 14/244 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142 W+ D S + +G + K +G + + ++H D I + ++ Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKTLG--FGEAARLMHPDDGGLYEIARAIANGHS 325 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 YV + A I S + GI + D+ Sbjct: 326 GQVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQ 382 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + E + + + + + L + Sbjct: 383 RLADAIECTSEAFVLWDKNDRLVMCNTHF------QEAYGLPDSVLVPGTERSIVNAAAA 436 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 D + + + +S +L E + Sbjct: 437 RPVIERRVADADGSGRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRES 496 Query: 323 PETV 326 + Sbjct: 497 ERRL 500 >gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74] Length = 863 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 104/381 (27%), Positives = 167/381 (43%), Gaps = 24/381 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL------FGYPVEDILRKPFT 498 +++ Q +LEA I I+N +G N+A S L + +++ F Sbjct: 212 QRLTYSEQQTKKLLEAVPVPIVIVNHQGKFYYANQAASHLVENINEYDPYDDEVSSNRFF 271 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 F + L + Q + K L + +S Sbjct: 272 RFPDGVPYPREQRPTYRALQGEATQVDDIELRT---NGKRFHLLSSSSPVYDASGNLQYV 328 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 + DIS+ Q + +L A+ +AEK + K DFLA +SHEIRTPL A++GFSE+++ Sbjct: 329 ITSSIDISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTN 388 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + E+ I +G +L IVND+LDISKIE+G + L P S+ + ++ Sbjct: 389 L----DADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAM 444 Query: 675 VQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 Q A +K + + N+P + + D + QI LN+++NAI FT G + + Sbjct: 445 CQGAATDKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQGS-VTLLIEQGE 503 Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 + V V+DTG+GM L + F Q GTGLGL + K++ + Sbjct: 504 RKTSASIPVRFIVQDTGIGMAREALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQ 563 Query: 789 MGKFYIFSTPAKGTLIEIIFP 809 G + ST KG+ + P Sbjct: 564 KGSVSVESTLGKGSRFTVEIP 584 >gi|73538740|ref|YP_299107.1| PAS [Ralstonia eutropha JMP134] gi|72122077|gb|AAZ64263.1| PAS [Ralstonia eutropha JMP134] Length = 1384 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 123/722 (17%), Positives = 243/722 (33%), Gaps = 60/722 (8%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 + +S+ + + + + V L ++ I L+ ++ + +G Sbjct: 575 IVHLSDRAGRFLQYVGGEPSHNIIATVRPELRLELRTAIFQALQTNHSVEARRVQLERDG 634 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 +++ A P++ + D+ + E Sbjct: 635 R--RFFVNMIARPVHDVEAN------------------ADFVLILFDEVEDSMAEADAAA 674 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 +++ VS L + L+ TS E E+ Sbjct: 675 VRPQRDPM-----------------VSQLEGELQRTKEQLQATIEQSETSTEELKASNEE 717 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPIP 332 IN + + T + + E L+ N S + G + + I Sbjct: 718 LQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLITANDIG 777 Query: 333 -FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 FV + + P + D ++ L+ KLSD+ A L +R Sbjct: 778 TIFVDRNIRIKRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLSDDAAEAFDSLRLIER 837 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 ++ R + R + ++ Sbjct: 838 EVRSSDGR------------WYLARLLPYRTTEDRIDGAVLSFIDITSRRAAEERLRDGE 885 Query: 452 MQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +++ + E+T D I + +G + S N ++FGY ++L + V Sbjct: 886 LRMRIVAESTRDYAIITFDDDGRVTSWNVGAHRIFGYDESEMLGRTADVLFTPEDREQRV 945 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK 568 E+ +E+ K+ ++ +L + Y+ D+ E + Sbjct: 946 PA-EEMAQARKYGRVEEDRWHLRKDGTRFRSSGVLSRLDTAGISGYAKIARDLDEVLPQG 1004 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628 + + + + +FLA VSHE++ PL I SE + + NP Sbjct: 1005 APRNDPTWRQDDDHMRRDEFLAVVSHELKHPLNLISASSE-LIARSAEARRNPVIARATA 1063 Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688 I R+ I++DLLD+S++ +GK++L +P+ E V V+ A K + + Sbjct: 1064 TIRRTVQNQAQIIDDLLDMSRMRTGKLSLTRDPIDWREVVQRVCDAVKEDAASKNLTLHC 1123 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + I AD+ ++Q+ N++SNA+ FT G +I ++ + L V+D+G G+ Sbjct: 1124 NLSGTPVWINADVTRIEQVVWNLISNALKFTREGDEIRVTLE-NEGDRARLVVKDSGHGI 1182 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807 L F Q N++ + G G+GL L K +V + G S G + Sbjct: 1183 DAQVLPHIFDMFRQGANARGRQS-GLGIGLSLVKEIVTLHGGTVSASSPGLGHGATFTVE 1241 Query: 808 FP 809 P Sbjct: 1242 LP 1243 Score = 44.6 bits (104), Expect = 0.068, Method: Composition-based stats. Identities = 16/226 (7%), Positives = 51/226 (22%), Gaps = 14/226 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + + G +M+G + + ++ + + + Sbjct: 904 DDDGRVTSWNVGAHRIFGYDESEMLGRTADVLFTPEDREQRVPAEEMAQARKYGRVEEDR 963 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 W + + + SG+ I L + + + Sbjct: 964 WHLRKDGTRFR--SSGVLSRLDTAGISGYAK--IARDLD-----EVLPQGAPRNDPTWRQ 1014 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 E + P + +++ + + + ++ Sbjct: 1015 DDDHMRRDEFLAVVSHELKHPLNLISASSELIA-----RSAEARRNPVIARATATIRRTV 1069 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 Q L+ + +L + + E + Sbjct: 1070 QNQAQIIDDLLDMSRMRTGKLSLTRDPIDWREVVQRVCDAVKEDAA 1115 >gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1] Length = 993 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 185/364 (50%), Gaps = 13/364 (3%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + L+ + G+ ++N +G IL TNR +++L D++ K Q Sbjct: 186 ENALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAVLPW 245 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 E + +++I ++L+ + + Y +T DI+ ++ K L+ A Sbjct: 246 EEAKQNDDSVMDRILQF-DNNGRMLTFSVNCTPI-AGQGYLVTFEDITLIEENKVALAKA 303 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + AE ++ KSDFLA +SHEIRTPL A++GF++V++ +++ N I RSG Sbjct: 304 RDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVS--NGDEAVDHLNMIHRSG 361 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++ND+LD+SKIESG + SLD+ V++ + +++ A+E+ + ++ F I Sbjct: 362 AHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAI 421 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE-------VILRVRDTG 745 PR I +D ++Q+ N++ NAI FT SG I+ S T + + + + DTG Sbjct: 422 PRTIQSDPTRLRQVITNLVGNAIKFTESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTG 481 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT + K F Q +S + GTGLGL +++ + +A G + S G+ Sbjct: 482 IGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFR 541 Query: 806 IIFP 809 + P Sbjct: 542 VELP 545 >gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1101 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 129/715 (18%), Positives = 232/715 (32%), Gaps = 35/715 (4%) Query: 109 YAFKMIGM----RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164 + G +++ P+ + L+ TW + + A Sbjct: 227 SDATLSGRADMLTFRELAARNVPAPSRELS--LEN-LTWDDLARRVAALPGTDAILLLSA 283 Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 R F F I+ + + Sbjct: 284 YEDAAGAPRPFEESLAF-ILRHADAPVFHLWEHGLGKGLAGGKVISHFEQGRIAAQLALR 342 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 + P + + ++ + H VL S + + Sbjct: 343 IMNGASPGDIPVIEGDAANRYIFDH--QVLARFGIAESQLPPGSRILNAPSSPWVVYRRE 400 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342 + L + + H E D+ P+ + G + Sbjct: 401 LRVAAAALVVILALTLFLIFHVIRLRQARTDVRHSEERYRILFDQSPVGIAHFDGEGGII 460 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 N F + + GL+ L D + + R+ Sbjct: 461 ALNAKFQEIVGAPRHKVL----GLNML------HDVRDPEMLRAVRTAFEGGIGRYEGSY 510 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + ++ I ++ + + + R + + M L T Sbjct: 511 TSVAGRKTTLVSCILKCIFAPGGRHLYGLIMAEDLTERRRAEDTLREREMFLLETQRITR 570 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDL 521 G L V+++ P + ++ F + L + Sbjct: 571 VGGWKAGTRSDRLVWTDEVNRILEVPPDYKPGLAESISFYAPEYRPGVWQMLQTVARDGT 630 Query: 522 RQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 LE + S K LR + + T+ DI+E K + +L +AK AE Sbjct: 631 PVDLECEVVTSLGARKWTHLRAVGRVEEHGEQLILGTLQDITERKTAEIELLNAKLRAEA 690 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 S KS+FLA +SHEIRTPL I+G +++ R G +YA+ +SG + + Sbjct: 691 ASKAKSEFLANMSHEIRTPLNGILGMLQLMHTTRLGA----EQADYADIAIQSGRRLARL 746 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699 ++D+LD+S+IESGK+++ P L AV + + L + + I + P +L Sbjct: 747 LSDMLDLSRIESGKLDIRHVPFQLAAAVQQVVELFLPISLQAGIRLDVRMDPTTPETLLG 806 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELE 754 D+ V+Q+ N+L N+ FT GG I ++ H V+ + DTG G+ +L Sbjct: 807 DIVRVQQVLTNLLGNSFKFTRIGG-ITLAVHRLPPPHAPACRVLFTISDTGCGIPEDKLG 865 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +PF Q N + +G GLGL + K +V G+ I S GT + P Sbjct: 866 ELFEPFTQASNGMRRSHQGAGLGLSICKRLVHLMGGEITIESEEGAGTTACVSLP 920 >gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10229] gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia mallei JHU] gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10229] Length = 772 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 112 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 170 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 171 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 228 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 229 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 284 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 285 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 342 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 343 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 402 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 403 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 458 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 459 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 518 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 519 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPR 577 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 578 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 616 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 145 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 204 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 205 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 262 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 263 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 322 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 323 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 367 >gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 2782 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 216/592 (36%), Gaps = 35/592 (5%) Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 + + + E A + + E + E ++LN ++ T +N Sbjct: 2205 AADLDARVRERTAELEQATRLLSEEKERLEAVNRITLELTTQLDLNLIIQRALELTSENL 2264 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355 E + + P+ F + G + ++ Sbjct: 2265 GVERGSLMLRDPVTGELFCRAVLHGRGRAEIANIPLRFADGTEGL-------AGWIIQHL 2317 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--NRENSLAM 413 +I L P +D+ + ++ I T + + + Sbjct: 2318 EAVNIPDVKHDPRWLKEPGRADDVQSVAGVPLQTSDNAIGVLILSSTQRHYFSASQMNLL 2377 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 + A N I + + + E + ++ + ++G+ +++ Sbjct: 2378 GTVASVIAAAVNNAQLYNFINDLALRNAVLLEEQREETSKSAAVFRSMTEGVIVLDTRQQ 2437 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--------LTEILSLDLRQTL 525 I N A ++ P +L +P + + + Q + Sbjct: 2438 ITLFNPAAEQVLDIPASQVLNQPLQQLASIGDDETSRRRAQTIYNGIVQGLRRMRESQGI 2497 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 ++ T +++++ I + P + + DI+ + Sbjct: 2498 FSTSVDLTDPSQVIAVNIAPVRGPDGQHYGEVVVLRDITR--------------EIEADK 2543 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K F++ VSHE+RTPLTAI G+ +V+ L P I Y I + N + ++ D Sbjct: 2544 EKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLT-PDQINYLTIIKNNTNRLRALIED 2602 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 +L+ S+ +S K L F V + + E + ++L K + +R +P + AD + Sbjct: 2603 ILEFSRPDSKK-KLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTLPPVTADQKR 2661 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 V QI N+ SNA+ +T GG I + + + V DTGVGM+ +L+K +PF + Sbjct: 2662 VSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQLKKLFRPFYRA 2721 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 N + GTGLGL +AK +V+ + G+ ++ S KG+ PL ++ Sbjct: 2722 DNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQETN 2773 >gi|284036575|ref|YP_003386505.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283815868|gb|ADB37706.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1043 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 113/762 (14%), Positives = 246/762 (32%), Gaps = 58/762 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMR-----------------LCDVSDILHIDPNN 131 D+ G ++ ++ L G A +++G R L + D + N Sbjct: 302 TDSQGVIQLVNPALETLTGYQADELVGKRTPGFLREPSVHHRQVDQLRPLLDDQSLTDEN 361 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + K+ + + G + V ++ L Y GF IV Sbjct: 362 TVMAYAKQYGFIRRENLIQTKSGQIIPVLSTVSGL--YDDQNTLLGF--VDIVTDISSLK 417 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----EY 246 + + + K D + L Sbjct: 418 SIEEALTKTQHRTDLAIKAGKLGIWEWNLLTDELILDEHFYAYFSFFEKGCLKHINDFLS 477 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLS 304 HK D+ + + S+ + Q T ++ + Sbjct: 478 LIHKADLALVNQTIESVRQGKSIADLSFRVYKPDTQTTYYLKVDGIRFEGEYDSVRRMIG 537 Query: 305 HRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359 + + E E VD F G Y NP++ +T + + Sbjct: 538 VVIDQTSQRQAEHSLQESELRYRSLVDNLKEAVFQTDTFGMWTYLNPAWEEITGFSIAES 597 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + L + + + +P+M + + + Sbjct: 598 L-GTSFLEYVFPEDQKRNLELFEPLMARQK-----SYCRHEIRYVSKAGGYRWIEVFARV 651 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTN 478 N+ E G + + ++ + + + +I E + I + E +L N Sbjct: 652 TVNEDNELTGTTGTLTDITERKLAEEALRESEQRFRAIAENLDELFWIRDSENLDVLYMN 711 Query: 479 RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 A +L G + ++ + + + + ++ + + + Sbjct: 712 SAFERLSGISMAELYQNPRALLSIVPEEDQPLL---IQAFRQPEPGTDFQFRARHQDGSL 768 Query: 537 KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + +R+ + + S DI+ + K LS + + ++ KS F++ SH Sbjct: 769 RYFHVRLFTMERGYGKQSGRIGVGTDITNVVENKRLLSESLEKERSLNTLKSQFISIASH 828 Query: 595 EIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 + RTPLT+I ++I+ ++ N +Y I + + +++ D L +SK+E Sbjct: 829 QFRTPLTSIQSSIDLIQYYISKNNEFPFNNIIQKYTGQISQQITFLEELIMDTLTLSKLE 888 Query: 652 SGKMNLHFEPVSLDEAVSEA-ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 GK+ ++ + L + + +S A+ + ++ + + D + + + +N Sbjct: 889 EGKVQVNLQKTDLKTFIQDVIVSTFSNQADGR--SVQQAMIGEPMAVWVDTKLMSHVLIN 946 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +L+NA F+ + + + T V + V D G+G+ +EL F + S + Sbjct: 947 LLANAFKFSSADPLLTVRYTP---GSVFISVSDKGIGVPAHELPNLFSKFFRA--SNARQ 1001 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 GTGLGL + + + G + S GT I P+ + Sbjct: 1002 INGTGLGLAICREYMHLQQGHIEVNSEVGVGTTFTITIPIQN 1043 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 54/444 (12%), Positives = 121/444 (27%), Gaps = 50/444 (11%) Query: 175 FSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 F G R G + R +R++ +F+ L E + + ++ Sbjct: 9 FEGSRYGVAFLRPVRQQKSTVFRCERVNYRFTQLLEQTSEELTRTGNALVLPFDKADDLS 68 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 +++ + L + + + + ++ + Q ++ + ++ + Sbjct: 69 GQLE---AVLKDGDPRQGNYYLHKANRWVSLTILRMGRQLVLQVSESDKVSIADHYHGIG 125 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF----VYSHG-----NLFYA 344 E L VD P +Y G Sbjct: 126 GPVNA-----------DQPNDLIELNQLLQAVVDSSPAGLSLLRPIYEDGQITDFRYLIT 174 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 NP L+T +E L TL + A ++ + + Q Sbjct: 175 NPQNSLITGCSQQTMLEK--SLLTLFPHLLTNGIFAKLVDVVCTNVTLHFEMLDDIRNSQ 232 Query: 405 WNRENSL------AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 +L + I + E + + + +IL Sbjct: 233 RWGSFTLLRVGGDVLFTIQDITRLKRTEADLRQANLNLEQRIAERTADLRQLSAFQQAIL 292 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEIL 517 GI+ + +G+I N A+ L GY ++++ + E + L +L Sbjct: 293 TYAGLGISATDSQGVIQLVNPALETLTGYQADELVGKRTPGFLREPSVHHRQVDQLRPLL 352 Query: 518 SL-------------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560 + + L TK +++ + + L + + D Sbjct: 353 DDQSLTDENTVMAYAKQYGFIRRENLIQTKSGQIIPVLSTVSGLYDDQNTLLGFVDIVTD 412 Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584 IS K + L+ + + Sbjct: 413 ISSLKSIEEALTKTQHRTDLAIKA 436 Score = 67.7 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 68/252 (26%), Gaps = 15/252 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144 + D G ++ + G + +G + N + + L+ RQ ++ Sbjct: 570 VFQTDTFGMWTYLNPAWEEITGFSIAESLGTSFLEYVFPEDQKRNLELFEPLMARQKSYC 629 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + Y I++ A + + E + G + + +++F Sbjct: 630 RHEIRY-VSKAGGYRWIEVFARVTVNEDNELT--GTTGTLTDITERKLAEEALRESEQRF 686 Query: 205 SHLHEIKKGHSSVEK-----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 + E + + + + +S + E Sbjct: 687 RAIAENLDELFWIRDSENLDVLYMNSAFERLSGISMAELYQNPRALLSIVPEEDQPLLIQ 746 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + P + + + ++ +T ++ +G + + + L + Sbjct: 747 AFRQPEPGTDFQFRARHQDGSLRYFHVRLFTMERGYGKQSGRIGVGTDITNVVENKRLLS 806 Query: 314 YFDEGENLTPET 325 E E Sbjct: 807 ESLEKERSLNTL 818 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 33/271 (12%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 N F L + S + L D + + D + Sbjct: 31 RCERVNYRFTQLLEQTSEELTRTGNALVLPFDKAD----DLSGQLEAVLKDGDPRQGNYY 86 Query: 400 LH-TIQW------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 LH +W L + +K + G D + + Sbjct: 87 LHKANRWVSLTILRMGRQLVLQVSESDKVSIADHYHGIGGPVNADQPNDLIELN-----Q 141 Query: 453 QLCSILEATSDGIAIINR---EGIILST-----NRAVSKLFGYPVEDILRKPFTVFLEQN 504 L ++++++ G++++ +G I N S + G + +L K Sbjct: 142 LLQAVVDSSPAGLSLLRPIYEDGQITDFRYLITNPQNSLITGCSQQTMLEKSLLTLFPHL 201 Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + + L +++ ++ E S + LR+ T+ DI+ Sbjct: 202 LTNGIFAKLVDVVCTNVTLHFEMLDDIRNSQRWGSFTLLRV-------GGDVLFTIQDIT 254 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 K+ + L A E+ + ++ L ++S Sbjct: 255 RLKRTEADLRQANLNLEQRIAERTADLRQLS 285 >gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp. M21] Length = 584 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 95/415 (22%), Positives = 174/415 (41%), Gaps = 26/415 (6%) Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSIL 458 L + + F E + E + ++ E QL +IL Sbjct: 194 LRRLAIGAQRIGRGEFGARIAVQSQDEMGELAQVMNEMSGRIERQLELISSEKNQLDAIL 253 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 +G+ + +R+ ++ N A +F ++ +P + E LS Sbjct: 254 NGMGEGVMVTDRDAVVTLVNHAFCSMFA-TGAEVQGRPLLEITRHPD---LYAACREALS 309 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKI 577 + E G K + + + HDIS +K+ + Sbjct: 310 ARQERHQEIALAG----GKTVLVHWVPLSEGDGLQGAVAVFHDISAFKRVE--------- 356 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 + DF+A VSHE+RTP+T I G++E + + R + I + + Sbjct: 357 -----KIRRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPQRAERFLLIIQNHADRL 410 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 +V DLL +S++ESG+M + +PV+LDEA+ +A+ LV EK + + + Sbjct: 411 SGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTV 470 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD ++Q+ +N+L NAI ++ +G + + T + V + VRD+G+G+ +L + Sbjct: 471 QADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEKDLPRLF 529 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + F ++ ++ GTGLGL + K +V A+ G + S KG++ PL Sbjct: 530 ERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLPLAR 584 Score = 46.2 bits (108), Expect = 0.025, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 69/265 (26%), Gaps = 25/265 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D + ++ ++ G L +++ + + L + + Sbjct: 263 TDRDAVVTLVNHAFCSMF-ATGAEVQGRPLLEITRHPDL--YAACREALSARQ-ERHQEI 318 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHL 207 T L + L+ E G +G + H + + D + Sbjct: 319 ALAGGKTVLVHWVPLS---------EGDGLQGAVAVFHDISAFKRVEKIRR--DFVANVS 367 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 HE++ + ++ + S R + + + +A + L + L E Sbjct: 368 HELRTPVTVIKGYAETLLSGALAADPQRA-ERFLLIIQNHADRLSGLVRDLLTLSELESG 426 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + Q ++ G E + ++ A E + +D Sbjct: 427 EMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLD 486 Query: 328 KC--------PIPFFVYSHGNLFYA 344 + G+L Sbjct: 487 NAIKYSETGKSVGVETAREGDLVRV 511 >gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+] gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+] Length = 1417 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 115/647 (17%), Positives = 213/647 (32%), Gaps = 54/647 (8%) Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 L + + ++ + +D+ + + + + VL + Sbjct: 430 TLPNRAARNLFVRNADLDKSADGFDLLPNW-----MVWDQDFTKQLDPSEYPIAVLLRTE 484 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 P + E ++ + + R H L+ Sbjct: 485 KPFVGLRIGMRDEHGKSLVFDVEGVAINDENTG-EFLAGVVTCRDVTRLHEELNQIKAAD 543 Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 E D P + G + N + T D P D Sbjct: 544 EERFGLICDTMPQLVWTATPDGQHDFYNSRWYHYTGLSEEDSFGEG------WSKPFHPD 597 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + S T + E + + Q + G + Sbjct: 598 DMVEAAKRWKHSLATGEPYMTEYRCRSKDGEWRWFLGRALPLRNKQTGKIEKWFGTCTDV 657 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST-----------NRAVSKLFG 486 ++ K + + QL S++ ++ + ++ I N G Sbjct: 658 HESIETKIEAKRTRQQLLSVIALSNMTMFTVDLNRKITMIEGALIWDYQCDNTTSRWFIG 717 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRII 544 V D+ + L + L IL + E G + + Sbjct: 718 ENVYDVFNR-LNSQLPEGQMPAFLSPLESILDGSTTREDFQEHEMDGRWYRTRFQPILGK 776 Query: 545 IKKLPFS-----SCYSLTMHDISEWKQEKN----------KLSHAKKIAEKESSHKSDFL 589 + + D++E K + +L + A++ S KS FL Sbjct: 777 RIREKGEANTIIEGVIGLIMDVTELKAREQDIQAQAQEKRQLVANEAAAKEASRLKSQFL 836 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+T +IG SE++ + + I RS N +L ++ND+LD SK Sbjct: 837 ANMSHEIRTPITGVIGMSELLLDVEL----TEEQRDITENIYRSANALLTVINDILDFSK 892 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQ 706 +ESG++++ SL V + ++ A K + + + +I ++ D V+Q Sbjct: 893 VESGRLDIEEVQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETDMVVMGDPGRVRQ 952 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQ 762 I N+++N+I FT G + S + E+ + DTG+G+ ++ +PF Q Sbjct: 953 IITNLVTNSIKFTNHG-HVKFSVFKEKDTPEITEIKFVIEDTGIGIEEEVRKRLFQPFSQ 1011 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 S + GTGLGL + K ++D G+ + ST GT P Sbjct: 1012 GDASTARKFGGTGLGLTICKHLLDLMKGRMVLESTLGTGTTATFWIP 1058 Score = 58.1 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 66/300 (22%), Gaps = 23/300 (7%) Query: 64 NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 N E F + W G + G G Sbjct: 537 NQIKAADEERFGLICDTMP-QLVWTATPDGQHDFYNSRWYHYTGLSEEDSFGEGWSKPFH 595 Query: 124 ILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGF 181 ++ L + + +G + ALP+ ++ + + F Sbjct: 596 PDDMVEAAKRWKHSLATGEPYMTEYRCRSKDGE--WRWFLGRALPLRNKQTGKIE--KWF 651 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G + + KR ++ + + I + + + Sbjct: 652 GTCTDVHESIETKIEAKRTRQQLLSVIALSNMTMFTVDLNRKITMIEGALIWDYQCDNTT 711 Query: 242 SLT-------EYYAHKDDVLKTEKYPLLTSEESSL----PEQEDFHTINLNQYTKKQYFG 290 S + + + L + P S S+ +EDF ++ + F Sbjct: 712 SRWFIGENVYDVFNRLNSQLPEGQMPAFLSPLESILDGSTTREDFQEHEMDGRWYRTRFQ 771 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 + + + D E E AN + Sbjct: 772 PILGKRIREKGEANTIIEGVIGLIMDVTELKARE-----QDIQAQAQEKRQLVANEAAAK 826 >gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199] gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199] Length = 666 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 121/644 (18%), Positives = 226/644 (35%), Gaps = 23/644 (3%) Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232 F+ + D L E E+ + P Sbjct: 29 GGFTVLLALLYARQIKKTADAERALATERATVQELERSLPA-RLQEHERSILEGVAVPVW 87 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 R + L+ + + E + + T Sbjct: 88 RRRPDGTLGYGNAPAMPLYPELEKVGPLAERAIHVGRAQSESRNMVVHGDRRLVDVTETP 147 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351 + L + + + ++ ++ L +AN +F L Sbjct: 148 AADGGTVGTARDLTALEQLQSELARHVDAHADVLETLRTAVAIFGPDKRLIFANTAFGRL 207 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 D +E L+ +L+ + + + D + + + Sbjct: 208 WSV-DADLLERDPTLTEVLERARENRRLPEQSDFRAWRDDFNRLFTTLI-------GSHE 259 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAI 467 + F+P + + G + ++ +E L ++ L+ DGIA Sbjct: 260 ELLFLPDDTTVRMAVTSHPFGGLLMVFEDVTDRLTLERSYNTLTAVQQETLDNLYDGIAA 319 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYLTEILSLDLRQTL 525 +G + N +G P + +P + + + + + + Sbjct: 320 FGADGRLKLINPTYRHQWGLPDDFGDDEPHVGLVLEAMRLKFGEEDRWPSVKAEWVTRLA 379 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 E++ E+ + L+ D+++ + L + E K Sbjct: 380 ERVPRSGRIEQSDGRVLDYGVVPLPDGASLLSFRDVTDTLAVQRALQERTEALEMADRLK 439 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA VS+E+RTPL AIIGFSE+++ + GP+ N R EYA I +S N ++ +VND+L Sbjct: 440 SEFLANVSYELRTPLNAIIGFSEILEQEYAGPM-NDRQKEYARAILQSSNRLVRLVNDIL 498 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++ IE+G + L V + L + A +RI + I+ D R + Sbjct: 499 DLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFSVRIDGTVAPIMVDERRLT 558 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q N++SNA FTP GG+++++ ++ V+ RV DTGVG+ + + F + Sbjct: 559 QALYNLVSNAFAFTPDGGRVLVTVE-DDDDMVLFRVADTGVGIALEDQGRVFDRFERAGR 617 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G GLGL L K++V+ + G + S P GT + P Sbjct: 618 DA-----GAGLGLALVKSLVELHHGTVELLSEPGHGTEVICRIP 656 >gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pasteur 52237] Length = 770 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 112 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 170 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 171 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 228 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 229 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 284 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 285 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 342 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 343 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 402 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 403 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 458 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 459 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 518 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 519 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 577 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 578 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 616 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 145 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 204 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 205 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 262 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 263 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 322 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 323 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 367 >gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 27-2-CHN] gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii 115-3-CHN] Length = 617 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 91/432 (21%), Positives = 181/432 (41%), Gaps = 37/432 (8%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 R+ +Q + ++ + V+ + E E +L S Sbjct: 209 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 264 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N+ +D + KP T L + + Sbjct: 265 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKDAVSKPITKILGLDDDVSAQELI--- 321 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574 +Q + T +E +L + + F S +HD++E ++ +N+ Sbjct: 322 ---GNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 374 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + F++ VSHE+RTPLT++ + E + + + ++ Sbjct: 375 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 422 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--------QLYANEKRILI 686 ++ ++NDLL +S+++ G + + E V+ ++ +S ++ + +K+ I Sbjct: 423 ERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSI 482 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + N + D + Q+ NI++NAI ++P GG I + T + N ++IL + D G+ Sbjct: 483 KRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQN-QIILSISDQGL 541 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L K F ++ ++ GTGLGL +AK +V+A+ GK + S KG+ I Sbjct: 542 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 601 Query: 807 IFPLYDTSHPHD 818 P S D Sbjct: 602 SLPFEPMSEEDD 613 >gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3] gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1] Length = 621 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 89/433 (20%), Positives = 179/433 (41%), Gaps = 38/433 (8%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 R+ +Q + ++ + V+ + E E +L S Sbjct: 212 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 267 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N+ ++ + KP T L + Sbjct: 268 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKILGLADDVSAQELI--- 324 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574 +Q + T +E +L + + F S +HD++E ++ +N+ Sbjct: 325 ---GNQQEMMITVNEGTPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 377 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + F++ VSHE+RTPLT++ + E + + + ++ Sbjct: 378 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 425 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV---------QLYANEKRIL 685 ++ ++NDLL +S+++ G + E V+ ++ +S ++ + EK+ Sbjct: 426 ERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYS 485 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I+ N + D + Q+ NI++NAI ++P GG I + + + N ++IL + D G Sbjct: 486 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQN-QIILSISDQG 544 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S KG+ Sbjct: 545 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 604 Query: 806 IIFPLYDTSHPHD 818 I P S D Sbjct: 605 ISLPFEPMSEEDD 617 >gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10] Length = 915 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 115/505 (22%), Positives = 207/505 (40%), Gaps = 31/505 (6%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 ++ N E + V+S G NP+F + + + G + Sbjct: 141 KEQEQRLNSYDELFETSNDLLGVFSLDGKFVKLNPAFSKMLGWSD-EQFMSRGFIE--FV 197 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 P+ ++ L + + + I + E + + Sbjct: 198 HPEDRESTLQVINTLAQGESL---VNFTNRYIIKSGAVRWIEWTCTPELQSGLVYTIG-- 252 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGYPVE 490 + + ++ +E + E + GI I + EG +L N A GY E Sbjct: 253 ---RDVTEFTTKQKLLERNEQKYRDPFEK-NQGIISIHDDEGYLLDVNEAGLNASGYLRE 308 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLP 549 ++ + + YL++I + K K + + Sbjct: 309 ELKDLNLYDLIIPEKHQNVKAYLSQIKTSGHASG---EMTVRKKNGEKAVWHFMSAIDED 365 Query: 550 FSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 + DI+E K+ ++++ AK++AEK KS+F+A +SHEIRTPL IIGF+ Sbjct: 366 VDGKVQVIANAVDITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFT 425 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 E++ + +Y + I++SG + I+ND+LD SK+E K+ L+ + V ++E Sbjct: 426 ELLLETNL----DDTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEEL 481 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726 VSEA ++V +KR+ + +NIPR + D +KQ+ +N+LSNA+ FT G +I+ Sbjct: 482 VSEAFNIVAYSNTKKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEEG-EIV 540 Query: 727 ISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + ++ VRDTGVG+ + F Q S + GTGLGL ++ Sbjct: 541 LYVKVLADLSEGKKKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTIS 600 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI 806 +++ + S KG+ Sbjct: 601 NQILELAGSVLQLESEQGKGSDFFF 625 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 71/240 (29%), Gaps = 9/240 (3%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151 G +++ K +G + + + + + + L + + T + Sbjct: 167 DGKFVKLNPAFSKMLGWSDEQFMSRGFIEFVHPEDRESTLQVINTLAQGESLVNFTNRYI 226 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 I+ + I+ P E + I + L +R ++K+ E Sbjct: 227 IK-SGAVRWIEWTCTP------ELQSGLVYTIGRDVTEFTTKQKLLERNEQKYRDPFEKN 279 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 +G S+ ++ + + ++ ++ L Y + + K L + S Sbjct: 280 QGIISIHDDEGYLLDVNEAGLNASGYLREELKDLNLYDLIIPEKHQNVKAYLSQIKTSGH 339 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E + + + + + +++ + ++ E +K Sbjct: 340 ASGEMTVRKKNGEKAVWHFMSAIDEDVDGKVQVIANAVDITERKKMEDEIVAAKELAEKA 399 >gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp. indica ATCC 9039] Length = 816 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 167/365 (45%), Gaps = 14/365 (3%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + ++++A + +G + ++ G P ++L + L + Sbjct: 8 HRREWRNLIDALPQLVWAATPDGTCDYFSHQWTEYTGVPESELLGWRWIEVLHPDDREPT 67 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 + T+ ++ + ++ + + S + + DIS+ K Sbjct: 68 REFWTDSVAG--HHPYDVEYRVRRRDGVYGWFKTRGVPIRDSRGIISKWCGSCTDISDLK 125 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L+ AK AE+ + K +FLA +SHEIRTP+ +IG ++++ G + + E Sbjct: 126 RAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLL----DGTELSVQQRE 181 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y + I S + ++ ++ND+LD SKIE+GK+ L P L + + + + + A K + Sbjct: 182 YVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLE 241 Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV--ILRV 741 + IP ++ D ++QI N++ NAI FT G ++ + T++ +V V Sbjct: 242 LAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQLEFEV 301 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RDTG+G++ + EK FGQ S R GTGLGL +A + + GK + S P G Sbjct: 302 RDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKIKLESEPGVG 361 Query: 802 TLIEI 806 + Sbjct: 362 STFSF 366 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 25/251 (9%), Positives = 59/251 (23%), Gaps = 10/251 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W G S + + G +++G R +V +P D + + + Sbjct: 22 LVWAATPDGTCDYFSHQWTEYTGVPESELLGWRWIEVLHPDDREPTREFWTDSVAGHHPY 81 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + + +G +Y +PI S + G R + Sbjct: 82 DVEYRVRRRDG--VYGWFKTRGVPIRDSRGIIS--KWCGSCTDISDLKRAEVALTRAKAE 137 Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + K + + + + + H D L Sbjct: 138 AEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSVQQREYVSIILHSADTLMRLI 197 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +L + + E + T +L + L++ + Sbjct: 198 NDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLELAYHVPVEIPDALVGD 257 Query: 319 ENLTPETVDKC 329 + + Sbjct: 258 PTRLRQIITNL 268 >gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 1039 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 118/740 (15%), Positives = 230/740 (31%), Gaps = 68/740 (9%) Query: 122 SDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 + ++ ID L + +T G+ L I+G+ A I +R F G Sbjct: 143 APLISIDDREQFRYLSEVDDTNSIIGEPVLSRIDGS----WKLFLARRINGPDRRFLGLI 198 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMK 237 I + D + L + + ++ P P + Sbjct: 199 EASI--KLKSLEDFYQSIDLGEGSTIALIRRDGALLARYPRTDTMIGRRLTDPEPGKMER 256 Query: 238 NKVSSLTEYYAHKDDV------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + D + +PL S + + Sbjct: 257 DLKEGAVVSRLALDGEHRYVAYRPVKDFPLTVSTTLTQDVVLASWRGDATIEAFGALGAV 316 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFL 349 S + + + G+ A S + Sbjct: 317 AGVLLLLSVLTRQIGKGRRSALLLARQNARFARSRQMLLDAQRIGKLGHWMTNAAGDSAV 376 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + + + G+S + + + R+ Sbjct: 377 WSPQLFEIAGLAPRPGVSLDQFLALIHPEDLQVFLHELELSRSGDTKLIHELRWVRPDGA 436 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + + + + GI + + + + E L +E+ S G + + Sbjct: 437 IRWIRMEADRRRDANGDPVGVFGIVQDITERKRAEAAAEASRHLLVDAIESMSQGFVLYD 496 Query: 470 REGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE--------ILSLD 520 + + N ++F + L S + + Sbjct: 497 KHDRFVLANSHFKEMFPELADRMKPGMRYEDVLCAVHQSDLVDAPKAGASFDEWLARTTA 556 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA------ 574 + + + + L + + DI+++K + L Sbjct: 557 WHRAANRPIERRYDNGRWIRL---VDHRTSDGGIAGLRTDITDFKTIEAALEQKVADLEL 613 Query: 575 ----------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 K+ AE S KSDFLA +SHEIRTP++ ++G ++++ Sbjct: 614 ARNNLESQKQELVAKSADLELAKETAEAASRAKSDFLAIMSHEIRTPMSGMVGMIDLLRE 673 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 YA S N +L + ND+LD SK+E+G++ ++ + AI Sbjct: 674 TPLTA----EQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELKAEAIDFDIEHTIGGAI 729 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 SL++ A K++ IRT +P ++ D ++QI LN+++NAI FT G I + ++ Sbjct: 730 SLMKAKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNAIKFTEQGA-ISVKASY 788 Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 E+ + + DTG+G+ ++ PF Q S + GTGLGL + K + Sbjct: 789 HSLDDDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKYGGTGLGLAICKQLALM 848 Query: 788 NMGKFYIFSTPAKGTLIEII 807 G+ + S P G+ Sbjct: 849 MGGEIGVRSGPEPGSTFWFT 868 >gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 681 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 108/535 (20%), Positives = 206/535 (38%), Gaps = 42/535 (7%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHG------NLFYANPSFLLLTKYKS 356 N L + E + L + F +Y NP+F Sbjct: 23 NQEQLISELGESKQLYHTLFNSIDEGFCLIEMIYDQQENPIDWRFLETNPAFEKQNG--- 79 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + A G AP + + R+ I + + Sbjct: 80 ---LYEAEGRRISELAPDMEPYWFNIYGEVART-GEPIRFQNETKAL---GGRWFDLYAF 132 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 P + + + + + + S+L A+ D + I+ EG I Sbjct: 133 RI----GEPGSHKIAVLFKDITKGKKADEATQYALQYARSLLGASLDPLVTIDAEGKITD 188 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A G P E ++ F + ++ + Sbjct: 189 VNEASEHATGIPRERLIGTDFCNYF--TDTVKAREGYQKVFFDGF--VRDYPLAIRHVSG 244 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEW-------KQEKNKLSHAKKIAEKESSHK 585 +++ + S D+++ +++ +L +K AE+ + K Sbjct: 245 RIMDVLYNASIYKDESGNVLGIFAAARDVTQQNILDQKLREKNIELERSKIAAEQANLAK 304 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 SDFL+ +SHE+RTPL AI+GF++++ + P + I ++G + D++N++L Sbjct: 305 SDFLSNMSHELRTPLNAILGFAQLL--EGGTPAPTETQTKRLKEILKAGWYLTDMINEIL 362 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 D++KIESG+ + EPV L + E S+ + A E I + S N + + AD +K Sbjct: 363 DLAKIESGQTPMLLEPVLLTNLLFECQSMFEPNALESGIKLLFSMVNRMWSVRADQTKLK 422 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 Q+ N+LSNAI + G + + + ++ + + V+D G G++ +L + +PF ++ Sbjct: 423 QVVSNLLSNAIKYNSEQGTVEVKCSESALGRIRISVKDNGAGLSAEKLAQLFQPFNRL-G 481 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + EGTG+GL ++K +++ G + S G+ I D+ H H+ I Sbjct: 482 QEVGVKEGTGIGLAVSKKLIEMMGGTIGVESAVGVGSEFWIELDKDDSLHAHELI 536 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 44/177 (24%), Gaps = 5/177 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 IDA G + +++E G ++IG C+ + + Sbjct: 180 IDAEGKITDVNEASEHATGIPRERLIGTDFCN-YFTDTVKAREGYQKVFFDGFVRDYPLA 238 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + G + + A + G F N + + + Sbjct: 239 IRHVSGRI--MDVLYNASIYKDESGNVLGI--FAAARDVTQQNILDQKLREKNIELERSK 294 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + S + P + L + +L + Sbjct: 295 IAAEQANLAKSDFLSNMSHELRTPLNAILGFAQLLEGGTPAPTETQTKRLKEILKAG 351 >gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC 700633] gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC 700633] Length = 616 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 164/376 (43%), Gaps = 31/376 (8%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E E +L S+L SDG+ +R G I+ N A + E ++ P Sbjct: 254 KEAQESTESERQRLDSVLRHMSDGVIATDRRGRIVIMNTAALDILNLKSEKVIGIPLLSI 313 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558 L + L + + E+ ++ + + S + Sbjct: 314 LPLDEKVTFRELLE----TQQERLIHLE---EDGEDSIIQCEFSVIQRESGFISGLVCVL 366 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ + +F++ VSHE+RTPLT+I ++E + + + Sbjct: 367 TDVTEQQKI--------------DRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--E 410 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + I+ + ++ ++ DLL++S+++ ++ L E ++++E V ++ ++ Sbjct: 411 NKEIAPGFLKVIETETDRMMRMITDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMV 470 Query: 679 AN-----EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 EK I T + D + Q+ NI++NAI ++P GG+II+ + Sbjct: 471 LQSEPYREKNYRILTDITQRDLWVELDQDKITQVLDNIINNAIKYSPDGGRIIVRL-MET 529 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + ++I+ V D G+G+ ++ F ++ ++ G+GLGL +A+ +V + GK + Sbjct: 530 HTDIIVSVSDEGLGIARKDIPHLFDRFYRVDKARSRAMGGSGLGLAIAQEVVQLHGGKIW 589 Query: 794 IFSTPAKGTLIEIIFP 809 + S KG+ + P Sbjct: 590 VNSIENKGSTFFVSLP 605 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 40/379 (10%), Positives = 104/379 (27%), Gaps = 36/379 (9%) Query: 11 EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDS 70 E I N G + S +I + ++ + Q + + Q S ++ Sbjct: 220 EKIAEGNYTGEVKIYSDDEIG---QLGQAINDLSFKIKEAQESTESERQRLDSVLRHMSD 276 Query: 71 ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN 130 D G + ++ + + K+IG+ L + +D Sbjct: 277 G--------------VIATDRRGRIVIMNTAALDILNLKSEKVIGIPLLSILP---LDEK 319 Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190 +LL+ Q + +G + + + + I + SG ++ Sbjct: 320 VTFRELLETQQ---ERLIHLEEDGEDSIIQCEFSV--IQRESGFISGL--VCVLTDVTEQ 372 Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 R + F + + Y + + + E + Sbjct: 373 ----QKIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAWENKEIAPGFLKVIETETDR 428 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + T+ L +++ L +++F +N F + + + + Sbjct: 429 MMRMITDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDIT 488 Query: 311 LSAYF-DEGENLTPETVDKCPIPFFVY--SHGN-LFYANPSFLLLTKYKSVDDIE-IAGG 365 + + ++ + +D Y G + + + S + + Sbjct: 489 QRDLWVELDQDKITQVLDNIINNAIKYSPDGGRIIVRLMETHTDIIVSVSDEGLGIARKD 548 Query: 366 LSTLLDAPKLSDNNAIKPV 384 + L D D + + Sbjct: 549 IPHLFDRFYRVDKARSRAM 567 >gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 667 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 177/385 (45%), Gaps = 20/385 (5%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI---LRK 495 + + ++ + + I + + I +I+ + + N+ + K+ GY ++ RK Sbjct: 132 REVAEHELAEKEEFINKIALLSPNIIYVIDIEKWTNIFHNKQIWKILGYSEHEVETDTRK 191 Query: 496 PFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 + + + + S+ + +EK K + + ++ Sbjct: 192 GLARIINERDQHTFRAHYNHMRYSVKDAEVVEKEFRLKHKNGSEIWIITREVPFKRNARG 251 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T DI+ K + +L AKK AE+ + KSDFL+ +SHEIRTP+ AIIGF+++ Sbjct: 252 RVQEVLGTAIDITARKIAEKELIQAKKDAEEATRIKSDFLSTMSHEIRTPMNAIIGFTDL 311 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + F + +Y N I S + +L I+ND+LD SKIE+GK L L E + Sbjct: 312 LLSSGFTG----QEQQYLNTIKYSADNLLVILNDILDFSKIEAGKFGLENFEFDLREKLG 367 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 + ++ A EK I + ++P+ ++ D + QI +N++ NAI FT GG + +S Sbjct: 368 YLMKTFEIRAKEKSIQFTFQCSTDVPQIVMGDPYRLNQIMVNLIGNAIKFTEEGGSVEVS 427 Query: 729 TTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKA 783 + ++ + V D+G+G++ +L F Q N+ GTGLGL + + Sbjct: 428 VHLDKDHGDSIDLKIDVSDSGIGISEDKLSVIFDSFSQAHNNNAVRNFGGTGLGLSITRK 487 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 + + G ST KG+ ++ Sbjct: 488 ITELMNGSISARSTLGKGSTFTVVL 512 >gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46] Length = 1362 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 115/765 (15%), Positives = 228/765 (29%), Gaps = 67/765 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLC---DVSDILHIDPNNHIGDLLKRQNTWYG 145 ID G + + + +G + ++G D+ + Sbjct: 388 IDGRGTVAVANRRAAELLGLASDALVGAPHARVPDLLRAAWSEAEPGGAHAGPAPLAERT 447 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +E + ++P A Sbjct: 448 LPDGRVLEIRSTWLP-----------EGGV-----VCTCTDVTARRSAEAALHEKTALLD 491 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 V + + L + + + + Sbjct: 492 ATLAHMDQGVLVIDQDGIVQLCNERALALLDLPAAFATEKPSFAALVAYQQRTGEFSGAT 551 Query: 266 ESSLPEQEDFHTINLNQYTKK---------QYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 E P + + + + + + H Sbjct: 552 EDHDPWLKLKGDLLGAPKVYERSRPNGTVIEVRTVRLASGGAIRTFSDVTAHRQRERAIG 611 Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E + P + Y N F S L Sbjct: 612 LSEARYRALAEALPQLVWTVRPDTREALYRNAQFDRYYGPISNAV------ADRLAHNHP 665 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + RL + + G Sbjct: 666 ADSARMAEAWARAERASEPLTVEGRLRR----HDGVYRWHRLVMVPLLTQGVITEWLGTA 721 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--- 491 + D + ++ L A G+ + + ++ +R ++ +G V+ Sbjct: 722 LDIDDIITAQEQVRQSKDLLQLAQTAAGAGVWEWDMQAGLVLLSRVSARRYGLEVDAADA 781 Query: 492 ---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKK 547 + + +T L + + E ++ + + + + Sbjct: 782 VVTLTSQEWTRLLHPEDAGRVWEAVHEAVATRQNYAVTFRPAARGGGGAVECWIEGHGRI 841 Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEI 596 + S D++ + + L A ++AE+ KS+FLA +SHEI Sbjct: 842 MRNGSGAPVRIVGLDFDVTPRMRAERALKQATRLAEQAREEAEAASTAKSEFLAMMSHEI 901 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G+++++ R +E+ I +G +L +VND+LD S IE+G++ Sbjct: 902 RTPLHGILGYADLLTECGLLAAEQQRQVEH---IRTAGRALLAVVNDVLDFSAIEAGRVA 958 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715 L P +L + E +++V+ A K + + +P ++ D V+Q+ LN+ +NA Sbjct: 959 LDPRPFALRALIGEVVAIVREPAERKGLTLAAEIDPAVPDWLVGDQGRVRQVLLNLAANA 1018 Query: 716 IHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 F +G + +S V VRDTGVG+ +L + + F Q S + Sbjct: 1019 QKFCHAGS-VTLSVAPDRIAAEALTVRFAVRDTGVGIEEDKLGRLFQRFSQADGSIRREF 1077 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GTGLGL ++KA+V+A G+ + S P +G+ L + P Sbjct: 1078 GGTGLGLAISKALVEAMGGRIGVESVPGRGSTFWFTLRLLRAAPP 1122 Score = 88.9 bits (219), Expect = 3e-15, Method: Composition-based stats. Identities = 58/488 (11%), Positives = 124/488 (25%), Gaps = 66/488 (13%) Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168 +IG + + P + ++ TW G+ L +P+ Sbjct: 200 RTGTIIGRSVDSANATG--RPLPGFAAVKGQRGTWSGRNLL---------------GVPV 242 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + + SG G+ + + + AL + L S L I V Sbjct: 243 F-ATYQRSGVAGWLV----SIGIERSALQEPLTDSLSVLVPIIAALMFV----------- 286 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 M + ++ + + S E + + + Sbjct: 287 -ALVASAMVGRRIVAAQHRLAEAARALGSGEAIPVPRSSFSEVDEVGAALAVASARLRDQ 345 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPS 347 L+ +++ + + R + L T+D + G + AN Sbjct: 346 ADALRAINRDLEQMVERRTREVAAQQV-----LLSTTLDAMDQGLVMIDGRGTVAVANRR 400 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L S L+ AP + ++ A A L Sbjct: 401 AAELLGLAS----------DALVGAPHARVPDLLRAAWSEAEPGGAHAGPAPLAERTLPD 450 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 L + + + R + + + L + L G+ + Sbjct: 451 GRVLEIRSTWLPEG-------GVVCTCTDVTARRSAEAALHEKTALLDATLAHMDQGVLV 503 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMNHYLTEILSLDL 521 I+++GI+ N L P KP L + + Sbjct: 504 IDQDGIVQLCNERALALLDLPAAFATEKPSFAALVAYQQRTGEFSGATEDHDPWLKLKGD 563 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 K+ S ++ +R S T D++ +Q + + ++ Sbjct: 564 LLGAPKVYERSRPNGTVIEVR---TVRLASGGAIRTFSDVTAHRQRERAIGLSEARYRAL 620 Query: 582 SSHKSDFL 589 + + Sbjct: 621 AEALPQLV 628 >gi|218530735|ref|YP_002421551.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218523038|gb|ACK83623.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 841 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 170/787 (21%), Positives = 299/787 (37%), Gaps = 77/787 (9%) Query: 35 ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV---------FDPIPRTVRF 85 E P F ++ S + E + + +R Sbjct: 118 EGHPVLLLAPIGSLPALRPFDSGPAKADSGPDVAKPEASSSSPPPSPAPEVEAAELPLRV 177 Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W DA G L +S P A + G ++ I+ + + L + T+ Sbjct: 178 IWRSDADGVLTHVSRTHPDL----AEVLSGRSWAMLAADGVIEGA-ALTEALAARRTFRT 232 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 L + G ++++ P +FSGF GF I+ Sbjct: 233 LPLL--VRGRVYEHALEISGAPAGRSTDDFSGFGGFAIL-------------------GE 271 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + E++ + +++P ++ +S + + ++ Sbjct: 272 RRARVMERAVEDEEDGPENLQEEAPIDETEAESGLSVNEHAAFREVARVLGLRFAPDEDG 331 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + P + LS E Sbjct: 332 DDAAPMPARA------------------ESVPSGSVMPFPIPQGRLSEAETRARLALTEL 373 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 ++ P+ VY + +A+ +FL LT Y + + A GL+ L D I PV Sbjct: 374 LESLPLGVLVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREIIGPVP 432 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 R + +A + W + A + + Sbjct: 433 FARPEGGTVALLVDRAGLVWEGAQAEICLARAMPAAG-------------DIQLPAVPAN 479 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + + +L++ DG+ ++ EG ++ N + ++L ++++ F + Sbjct: 480 AARLRAEK---VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPES 536 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 S + +T+ + L LRI + Y ++ +I + Sbjct: 537 LSALETAVTDSRRSGTSEVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDED 593 Query: 566 ---QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + E E K++ LARVS EIR L AI+G ++++ + RF R Sbjct: 594 VAPPAPVAEVARRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAER 653 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y + SG + +++DL D+++I++G+ L F ++L+E V+ I+ Q A Sbjct: 654 LEAYLREVRLSGGRIAALIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARD 713 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 RI++RTS A ++P + AD RS++Q AL +L NAI T +GGQ+I+STT EV LRVR Sbjct: 714 RIVLRTSLAPSLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVR 773 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG GMT EL A++PFG G+ G GL L KA+V+AN G+F I S +GT Sbjct: 774 DTGTGMTEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGT 832 Query: 803 LIEIIFP 809 L+E++FP Sbjct: 833 LVEMLFP 839 >gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 668] gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 668] Length = 771 Score = 334 bits (856), Expect = 5e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 773 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 121/507 (23%), Positives = 223/507 (43%), Gaps = 51/507 (10%) Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 Y + S + YK + + G + ++ ++ + + R ++ Sbjct: 274 YWSRSMYDMLGYKPCETMLSFGEVDQIIH----PEDGDLFELANRIVAREIDHID-QVFR 328 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 ++ + M + PE + GI + + R + E ++L + +E + Sbjct: 329 MRHADGQWVWMRARAQVIDPEAPE-IQLIGIAVDVTEQRHLALRSEAADLRLRTAIENIN 387 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDL 521 + + + ++ N + G D++ LE+ + L L Sbjct: 388 ESFVLWDSTQHLIMCNSKYQQDNGLSDRDVMPGTARAALEERMLAFASERRLAHTSGLQG 447 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK- 580 T E+ + + L + + + DI++ K + KL +++ Sbjct: 448 GATFERQL----ADGRWLQVNELKTR---DGGIVSVGSDITQIKLHQEKLVDSERRLMAT 500 Query: 581 ----------------------------------ESSHKSDFLARVSHEIRTPLTAIIGF 606 + KS+FLA +SHE+RTPL AIIGF Sbjct: 501 IHDLSLARRAEEERSRELVDLNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGF 560 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE+++ FGPLG+ RY EYA I+ SG +L ++ND+LD+SKIE+G+ +L E + L Sbjct: 561 SELMEQGLFGPLGSERYEEYATDINSSGKYLLGVINDILDMSKIEAGQFSLDREEIDLGP 620 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 +SE + +V L A +K I + T A+ + ++AD R++KQI +N+LSNA+ FT GG I Sbjct: 621 LISETVRVVSLQAAQKAISVETRIADAL-TLVADRRAIKQIVINLLSNAVKFTGHGGHIS 679 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + ++ ++L + D G G+ L K +PF Q+ N G+GLGL +++++ + Sbjct: 680 VR-ARNTSGALVLTIEDNGCGIPKEALGKLGRPFEQVQNQFSKSHAGSGLGLAISRSLAE 738 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813 G I S+ GT++ + P+ + Sbjct: 739 LQGGALKIRSSEGVGTIVSVRIPVKKS 765 >gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 988 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 175/387 (45%), Gaps = 15/387 (3%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREGIILSTNRAVSKLFGYPVEDIL 493 +D + ++ + L SI++ T GI I RE ++ N+A + G ++ Sbjct: 453 ILDQKKAEQALVKSEETLRSIIQETPIGIHIYELFERELVLTGANQAADLILGINHSQLI 512 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 K + ++ E+L T +G + I+ ++ + Sbjct: 513 GKKLNDAFPMLEETNISDQYLEVLKTGK--TWHTEQIGYEDVNISGTYEILCFRIFSNQ- 569 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 ++ DIS KQE+ +L +AK+ AE + KS+FLA +SHEIRTPL I+G +++++ Sbjct: 570 IAVMFMDISSRKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLEST 629 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 + EY + S + +++D+LD+S+IE G + L ++ E I+ Sbjct: 630 D----TDHEQSEYIDIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVIN 685 Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---ST 729 + K I + TS NIP + D ++QI NI N+I FT SG +I I S Sbjct: 686 TFITELSSKEIELSTSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSSG-RIFINIDSL 744 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + + V DTG+G+ +L++ PF Q S + G GLGL + K ++ A Sbjct: 745 IQRQTIYLFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMG 804 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S KGT I P + P Sbjct: 805 GTITVESNIDKGTTTCIAIPFQTSEPP 831 Score = 81.6 bits (200), Expect = 5e-13, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 97/295 (32%), Gaps = 20/295 (6%) Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGL 366 +LS + ++L ++ P+P F V + + N + L + K +++ Sbjct: 26 ETLSKTVMQDKSLFNTVLNCLPMPYFLVDNSERIVQTNSASLEMLKISGPIEETYGKTLA 85 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + PK + ++ I + N L + F + Sbjct: 86 EVFYNDPKH-------ITFMSQTLCQGIVYRDLEVPTKDRHGNDLNIIANIFPLYDTNNI 138 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + I + ++ ++ ++ + +++ G+ + + I+ N S+L G Sbjct: 139 CIGGMSIYVNHTERKMTQKALQESEKKNHDLIQNLHAGVVVHAPDSRIIVANDQASQLLG 198 Query: 487 YPVEDILRKP---FTVFLEQNT---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + K S + +++++ + + + L+ Sbjct: 199 LSIPQLKGKNALDPEWCFIHEDGTKMSFAEYPVSQVIKTRSPVRNLILGINRHLHKDLVW 258 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLA 590 + + + +T +I++ K+ + + L + ++ + + F + Sbjct: 259 VLVNAFPEFDQNNELLQVIVTFVNITDRKKYEEQILRNEMRLLSIVNILQHQFTS 313 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 20/251 (7%), Positives = 59/251 (23%), Gaps = 22/251 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHID---PNNHIGDLLKRQNTW 143 + +++ + +G ++ G D + ++K ++ Sbjct: 182 PDSRIIVANDQASQLLGLSIPQLKGKNALDPEWCFIHEDGTKMSFAEYPVSQVIKTRSPV 241 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 V + + A P + +N E + R + + Sbjct: 242 RNLILGINRHLHKDLVWVLVNAFPEFDQNNEL--LQVIVTFVNITDRKKYEEQILRNEMR 299 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + I + + ++ D ++ +++ Y V + Sbjct: 300 LLSIVNILQHQFTSAQDFLDFALDEA----IKITESKIGYIYRYNEDRQVFILNTWSKDV 355 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E S+ + + ++ + + + N Sbjct: 356 MHECSITSPQVCYELDKTGIW---------GEAVRQRKPIILNNFQEEHPLKKGLPPGHA 406 Query: 324 ETVDKCPIPFF 334 IP F Sbjct: 407 FLKSFMTIPVF 417 >gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia mallei PRL-20] gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 23344] gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia mallei SAVP1] gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia mallei NCTC 10247] gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia mallei FMH] gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia mallei ATCC 10399] gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia mallei PRL-20] Length = 771 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB 400] Length = 869 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 117/678 (17%), Positives = 245/678 (36%), Gaps = 57/678 (8%) Query: 182 GIVHVNRVDNDPRALGK---RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238 + L + + + + Sbjct: 35 AAIEEVTERRHAEEALLNAGALQRAIFNSANFSCIATDAKGVIQIFNVGAERMLGYSAIE 94 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-----------------QEDFHTINLN 281 V ++T + L + + + + + + Sbjct: 95 VVDNITPAEISDPQEIIARAEALSVELSTPIEPGFDALVFKATRGIEDIYELTYIRKDGS 154 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVY 336 ++ L+++ YL S+ +E Sbjct: 155 RFPAVVSVTALRDDQGIIIGYLLIGTDNSVGKQAEEALLKAGALQKAIFNSANFSSIATD 214 Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLS----------TLLDAPKLSDNNAIKPVML 386 +HG + N + Y + + + + +L L Sbjct: 215 AHGVIQIFNVGAERMLGYTADEVMNKITPADISDPKEVIERAKELSIELDTAITPGFDAL 274 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 R I L I+ + A+ ++ + I ++ + + + Sbjct: 275 VFKARRGIEDIYELTYIRKDGSRFPAV-VSVTALRDEHKAIIGYLLIGTDNTARKRIEEE 333 Query: 447 MEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + +L +++E+ D + + GII N+ + +L G + ++ PF Sbjct: 334 QKELGRRLQDQHFYTRNLIESNIDALTTTDPSGIITDVNKQMEELTGNNRDSLIGTPFKD 393 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557 + P + +LS + E +E ++S+ + Sbjct: 394 YF--TDPEFAAAGIKRVLSEKIISDYELTARTKNGKETVVSINATTFYHRDNKLQGIFYG 451 Query: 558 MHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 D++E + +L +AK +AEK + KSDFL+ +SHE+RTPL AI+GF++++ Sbjct: 452 ARDVTERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLM 511 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + P P I ++G +L+++N++LD++ IESGK+ + E VSL E + E Sbjct: 512 --ESSTPAPPPAQKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQE 569 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + + + A I + + + + D +KQ+ +N+LSNAI + GG +I+ + Sbjct: 570 CVLMSEPQAQLHDIKVVFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHS 629 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +S++ + VRDTG G++ +L + +PF ++ + EGTG+GL ++K +V++ G Sbjct: 630 QSSDDMMRFSVRDTGEGLSAEQLGQLFQPFNRL-GQEANNQEGTGIGLVVSKRLVESMGG 688 Query: 791 KFYIFSTPAKGTLIEIIF 808 + ST G++ Sbjct: 689 VIGVQSTVGVGSVFWFEL 706 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 44/168 (26%), Gaps = 18/168 (10%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 N + E + R + + +I + + + +G+I N Sbjct: 25 NSEDDVDLFEAAIEEVTERRHAEEALLNAGALQRAIFNSANFSCIATDAKGVIQIFNVGA 84 Query: 482 SKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------K 527 ++ GY +++ + L+ LS + + Sbjct: 85 ERMLGYSAIEVVDNITPAEISDPQEIIARAEALSVELSTPIEPGFDALVFKATRGIEDIY 144 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571 K+ + + L Y L D S KQ + L Sbjct: 145 ELTYIRKDGSRFPAVVSVTALRDDQGIIIGYLLIGTDNSVGKQAEEAL 192 Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 37/420 (8%), Positives = 99/420 (23%), Gaps = 70/420 (16%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---------- 138 DA G ++ + + +G A +++ +++ DP I Sbjct: 71 TDAKGVIQIFNVGAERMLGYSAIEVVD----NITPAEISDPQEIIARAEALSVELSTPIE 126 Query: 139 -----------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187 R + T +G+ P ++ + G+ G N Sbjct: 127 PGFDALVFKATRGIEDIYELTYIRKDGS--RFPAVVSVTALRDDQGIIIGYLLIGT--DN 182 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------------------KYDIFSQQS 229 V + + S ++ ++ + Sbjct: 183 SVGKQAEEALLKAGALQKAIFNSANFSSIATDAHGVIQIFNVGAERMLGYTADEVMNKIT 242 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQ 287 P K + E D + L+ + + + + + +++ Sbjct: 243 PADISDPKEVIERAKELSIELDTAITPGFDALVFKARRGIEDIYELTYIRKDGSRFPAVV 302 Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT-----------PETVDKCPIPFFVY 336 L++ K YL + +E + ++ Sbjct: 303 SVTALRDEHKAIIGYLLIGTDNTARKRIEEEQKELGRRLQDQHFYTRNLIESNIDALTTT 362 Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G + N LT I P+ + + + + Sbjct: 363 DPSGIITDVNKQMEELTGNNRDSLIGTP--FKDYFTDPEFAAAGIKRVL-------SEKI 413 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 S T + ++ ++ + + + +K+ + ++L Sbjct: 414 ISDYELTARTKNGKETVVSINATTFYHRDNKLQGIFYGARDVTERNRLNQKLLEKNIELE 473 Score = 37.7 bits (86), Expect = 9.4, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 13/172 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ + GN +IG D I +L + + T Sbjct: 362 TDPSGIITDVNKQMEELTGNNRDSLIGTPFKDYFTDPEFAAAG-IKRVLSEKIISDYELT 420 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G V I+ + GI + R + L ++L +K L Sbjct: 421 ARTKNGKETVVSINATTFYHRDNKLQ-------GIFYGARDVTERNRLNQKLLEKNIELE 473 Query: 209 EIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 K K D ++P + ++ + Sbjct: 474 NAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLMESSTPAPPPAQKRS 525 >gi|148253661|ref|YP_001238246.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1] gi|146405834|gb|ABQ34340.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1] Length = 786 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 100/629 (15%), Positives = 213/629 (33%), Gaps = 83/629 (13%) Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 A + +L+ + P + S + LQ + S L+ Sbjct: 8 PTGASSEALLEAMQAPPPAAGALSFRMFLASVLAAAATVVAVELLTDLQKDRIVSLLMLA 67 Query: 305 -----------------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF----- 342 R+ +L+ + +T + G+ Sbjct: 68 FGAVVVMIVLTSMLIRKSRHAIALANALARQNDQLAQTTRLLGDAQRIGRLGHWVTDPSG 127 Query: 343 ---YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + + + VD + A L + + V R A + Sbjct: 128 EFAVWSDELFEIAGLEPVDQVAFAKMLDII------HPEDVGAYVRARDRSRATGCAFIQ 181 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + + GI + + ++ + + + L +E Sbjct: 182 ELRFVTPNGQVRWVRIEANASDEADGVFRERFGIVQDITERKLAEINADQARLLLMDAIE 241 Query: 460 ATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMN 510 + ++G + +++ + +N ++F G +++R+ + L ++ Sbjct: 242 SLTNGFVLFDKDDRFVMSNTMFREMFPAWTVLMKPGISFTELMRRAYEHGLIRSKGDRFE 301 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 +L ++ + + + + DI+ +K + + Sbjct: 302 EWLAR--KTAWHLGGSRMIEHRELNGRWIQ---SVDHRISDGGTVCLVTDITAFKTVQAE 356 Query: 571 LSH-------------AKKIAEKESSH---------------KSDFLARVSHEIRTPLTA 602 L + + KSDFLA +SHEIRTPL+ Sbjct: 357 LEQKLAYVEAIRSDLEQQTQELEARGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSG 416 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 ++G ++++ G + Y S +L+L+++ND+LD SK+E+G++ Sbjct: 417 MVGMVDLLR----GTSLSEEQKRYTALAKESADLLLEVINDILDFSKLEAGRLQSECIDF 472 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721 + V A+S + A + + ++ S A +P+ + D ++Q+ LN++ NAI FT Sbjct: 473 DVPNLVESAVSFMGEKARRRGLDLKVSLAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQ 532 Query: 722 GGQIIISTTHT--SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 G I + +H ++ + V DTG+GM+ L + PF Q S + G+GLG Sbjct: 533 GS-IEVRASHRQLDGGVVDLRIEVIDTGIGMSPEILAQIFDPFVQADTSISRKYGGSGLG 591 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 L + + + G + S +G+ Sbjct: 592 LAICRQLCTIMGGSIGVDSELGRGSRFWF 620 >gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 406e] Length = 770 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 112 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 170 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 171 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 228 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 229 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 284 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 285 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 342 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 343 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 402 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 403 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 458 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 459 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 518 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 519 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 577 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 578 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 616 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 145 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 204 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 205 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 262 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 263 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 322 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 323 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 367 >gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47] Length = 993 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 185/364 (50%), Gaps = 13/364 (3%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + L+ + G+ ++N +G IL TNR +++L D++ K Q Sbjct: 186 ENALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAVLPW 245 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 E + +++I ++L+ + + Y +T DI+ ++ K L+ A Sbjct: 246 EEAKQNDDSVMDRILQF-DNNGRMLTFSVNCTPI-AGQGYLVTFEDITLIEENKVALAKA 303 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + AE ++ KSDFLA +SHEIRTPL A++GF++V++ +++ N I RSG Sbjct: 304 RDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVS--NGDEAVDHLNMIHRSG 361 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L+++ND+LD+SKIESG + SLD+ V++ + +++ A+E+ + ++ F I Sbjct: 362 AHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAI 421 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE-------VILRVRDTG 745 PR I +D ++Q+ N++ NAI FT SG I+ S T + + + + DTG Sbjct: 422 PRTIQSDPTRLRQVVTNLVGNAIKFTESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTG 481 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +GMT + K F Q +S + GTGLGL +++ + +A G + S G+ Sbjct: 482 IGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFR 541 Query: 806 IIFP 809 + P Sbjct: 542 VELP 545 >gi|167644961|ref|YP_001682624.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] gi|167347391|gb|ABZ70126.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31] Length = 832 Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats. Identities = 107/588 (18%), Positives = 212/588 (36%), Gaps = 29/588 (4%) Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 R+ L L + + + L Sbjct: 110 AWGMRRVVGDEVDLGRVRDMIAFALICGLAAPIATGVLAATLHTAMRGGVLWANIGVWSL 169 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349 G + + L+ + + + V+S + Sbjct: 170 GDILGLMTITPCLLALVRIRDYLRERPLSASGVASLLLLLAVTVGVFSQNRPLLFVIPPV 229 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 +L ++ + A + + P+ +S A +L Sbjct: 230 MLLVAWRLEVLGAALSATLVAVVAVTFTMAGHGPITQLKSGSPDQAIVLQLF-------- 281 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 FI A+ E + + + E D I N Sbjct: 282 LAVAIFISLPVASIQRHRRNMLHSMTE------ANAAVARSEARFRQLAENAQDMIIQSN 335 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY----LTEILSLDLRQTL 525 GI+ + + G+ E+++ + + + + L + + Sbjct: 336 MRGIVQYASPGCLAMTGFTPEEVVGREGMQIVYEEDREAVRAIVIAQLAHLAADIDNGPN 395 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 + K+ +++ L + + + DI+E K + +L A+ AE Sbjct: 396 RVEYRAARKDGRIIWLESRPTLSRDPLTGKVTGITDIVRDITEHKAMERQLREARNEAEA 455 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 ++ K +FLA +SHE+RTPLT+++GF+ ++ N+ P +P + + + G +L Sbjct: 456 AAAVKGEFLANMSHELRTPLTSVLGFARLVDNE---PDLSPDARRFISRVLSGGKALLTT 512 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699 +ND+LD SK+E+G++ L EP + + + EA+ L L + + +R ++P +L Sbjct: 513 INDILDFSKLEAGQLELKLEPTAPAQLIDEAMDLFSLETEARGVALRAVGLEDLPADLLI 572 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMK 758 D ++Q+ LN++ NA+ FT G I +S + E + L V DTG G+ +++ + Sbjct: 573 DGGRLRQVLLNLIGNAVKFTEVG-TITVSAAYEPAGERLSLSVADTGPGIAPGDVDLLFR 631 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 F Q+ + GTGLGL + K +V+A G+ + S P +G Sbjct: 632 RFSQVDAGLTRKHGGTGLGLAICKGLVEAMGGQIGVTSVPGQGACFSF 679 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 40/368 (10%), Positives = 82/368 (22%), Gaps = 32/368 (8%) Query: 61 SVSNTNYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119 S++ N + + F + G ++ S G +++G Sbjct: 305 SMTEANAAVARSEARFRQLAENAQDMIIQSNMRGIVQYASPGCLAMTGFTPEEVVGREGM 364 Query: 120 DVSDILHIDPNNHI-----GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR-NR 173 + + I L + + + ++ Sbjct: 365 QIVYEEDREAVRAIVIAQLAHLAADIDNGPNRVEYRAARKDGRIIWLESRPTLSRDPLTG 424 Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 + +G IV + + +K + + S Sbjct: 425 KVTGIT--DIVRDITEHKAMERQLREARNEAEAAAAVKGEFLANMSHELRT-PLTSVLGF 481 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 R+ + L+ + + LLT+ L DF + Q K Sbjct: 482 ARLVDNEPDLSPDARRFISRVLSGGKALLTTINDIL----DFSKLEAGQLELKLEPTAPA 537 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA------NPS 347 E+ + S G L ++ P + G L N Sbjct: 538 QLIDEAMDLFSLETEAR-------GVALRAVGLEDLPADLLI-DGGRLRQVLLNLIGNAV 589 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 +V G L A V L + + A + + Sbjct: 590 KFTEVGTITVSAAYEPAGERLSLSVADTGPGIAPGDVDLLFRRFSQVDAGLT----RKHG 645 Query: 408 ENSLAMTF 415 L + Sbjct: 646 GTGLGLAI 653 >gi|320104791|ref|YP_004180382.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] gi|319752073|gb|ADV63833.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644] Length = 973 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 111/575 (19%), Positives = 214/575 (37%), Gaps = 52/575 (9%) Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 +L Q + + F T+ P A E + Sbjct: 64 ALLSQTSVLQVAWVARLVESGFDTVLATLLSLAVVWPLVIRPLKRALEVERVKVNQILER 123 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-------NNA 380 + S G + NPS + Y + + + + D Sbjct: 124 SAEAIVSLDSAGRIVSINPSAARMFGYSASEVVGESFLKLFTFSGQAAQDIKSSLKAATF 183 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + D+T + + + + + + Sbjct: 184 QQVPRGLKKDQTTFPIELSITEVMVEGRRLVTLFVR-------------------DLTEV 224 Query: 441 RINKRKMEIEVMQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498 + KR+ E V QL S+L+A + I + G++ N ++ GY +++ + Sbjct: 225 QNWKRRQEEAVNQLRSVLDAATRFSIVATDAHGVVEVFNTGAERMLGYQASEVIGRMRLD 284 Query: 499 VFLEQNTPSVMNHYLTEILSL------------DLRQTLEKITLGSTKEEKLLSLRIIIK 546 L L E+ K+ L + ++ Sbjct: 285 QLHLPQELREEAQRLETKLGQPIDPIEVLFEPVRRLGFQERTWTYVRKDGGTLLVNLVTT 344 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 S+ Y D++E + + ++ A+ A+ + KS+FLA +SHEIRTP+T+ Sbjct: 345 PRRDSAGRIVGYVGIADDVTEQVRYQEEIRRARDRADAANRAKSEFLASMSHEIRTPMTS 404 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I+G ++++ L R E I +G +L I+ND+LD++KIE+GK+ + P Sbjct: 405 ILGHADIL---NLPDLTPQRLAEARGAIQAAGRHLLRIINDILDLAKIEAGKLPMEILPC 461 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721 E ++ +++ A + + + A +P +I D ++Q+ N++ NAI FT Sbjct: 462 DPWTLAREVVAGLRINATRRELALTLEAAGPLPKQIQTDPNRLRQVLYNLVGNAIKFTEK 521 Query: 722 GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG + + + + + V DTGVGMT ++ K PF Q + GTGLGL + Sbjct: 522 GG-VRLIVSFDPSACRLSFDVIDTGVGMTPEQVGKLFTPFYQAE--RTHNAGGTGLGLVI 578 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +K + + G + S +G++ ++ P+ + Sbjct: 579 SKRLAERLGGTIKVQSQRGRGSVFSVLIPVDPAAA 613 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 53/496 (10%), Positives = 130/496 (26%), Gaps = 53/496 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G + I+ + G A +++G + + L + T+ Sbjct: 131 LDSAGRIVSINPSAARMFGYSASEVVGESFLKLFTFSGQAAQDIKSSL--KAATFQQVPR 188 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + T PI+L+ + R V + + + + + Sbjct: 189 GLKKDQTTF--PIELSITEVMVEGRRLVTL----FVRDLTEVQNWKRRQEEAVNQLRSVL 242 Query: 209 EIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + S V + + + + + + H L+ E L T Sbjct: 243 DAATRFSIVATDAHGVVEVFNTGAERMLGYQASEVIGRMRLDQLHLPQELREEAQRLETK 302 Query: 265 EESSLPEQED----------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + E + + ++++ Y+ + Sbjct: 303 LGQPIDPIEVLFEPVRRLGFQERTWTYVRKDGGTLLVNLVTTPRRDSAGRIVGYVGIADD 362 Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + E + D + + + DI L+ Sbjct: 363 VTEQVRYQEEIRRARDRADAANRAKSEFLASMSHEIRTPMTSILGH---ADILNLPDLTP 419 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 A A +L + A + + P+ A + + Sbjct: 420 QRLAEARGAIQAAGRHLLRIINDILDLAKIEAGKLPME-----ILPCDPWTLAREVVAGL 474 Query: 429 PQNGIEPEDVDTRINK----RKMEIEVMQLCSILEAT-SDGIAIINREGI--ILSTNRAV 481 N E T ++++ + +L +L + I + G+ I+S + + Sbjct: 475 RINATRRELALTLEAAGPLPKQIQTDPNRLRQVLYNLVGNAIKFTEKGGVRLIVSFDPSA 534 Query: 482 SKL--------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531 +L G E + + + + T + L ++S L + L Sbjct: 535 CRLSFDVIDTGVGMTPEQVGKLFTPFYQAERTHNAGGTGLGLVISKRLAERLGGTIKVQS 594 Query: 532 STKEEKLLSLRIIIKK 547 + S+ I + Sbjct: 595 QRGRGSVFSVLIPVDP 610 >gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6] gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6] Length = 899 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 131/722 (18%), Positives = 250/722 (34%), Gaps = 65/722 (9%) Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-----SRNREF 175 V DP+ + + + ++ + I+ T+ V +A I + Sbjct: 204 VWMPDPDDPDQLVAEYVAGEHAEASRGLRVSIQNTHDLVVRAFSARRIQFEKTPDAAQHG 263 Query: 176 SGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE-KYDIFSQQSPPPH 233 +R G G+ LH+ G +++ + Q Sbjct: 264 DWYREGCGV-----------------MALPMMLHDHVVGVVTLQDPLSVEHLRFQQDLTQ 306 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + +L + + E + ++E +NQ + + Sbjct: 307 GVISQAAIALQNAQLYAKVRSLNVELEQRVEERTRQLQEEKDRLATINQISIEVSSTLDL 366 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLT 352 ++ + L + A E+ V + + + Sbjct: 367 DSILNTSLTLVANMCQAEHASIMLTESDDSLLVTRAVYGVPASPGNYIRFPIGSGVAGWV 426 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + + M+ + Sbjct: 427 AQQRKGILIDDISTDERWLSIPGGSLRKRHGSMIAVPLLMQGEVLGVISISHRTSGFFHE 486 Query: 413 MTFIPFEK-ANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAI 467 A + + + ++ + E Q+ +IL+ +DG+ + Sbjct: 487 GHLRLVHACAGPIAIGVNNANLFQMITSEAERRYELLDRQQTEASQIEAILQNLADGVIV 546 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526 + G +L N A G +ED+L + LTE+L+ L + Sbjct: 547 CDLYGSVLMANEAAGTTLGRTIEDLLLWNLHDIINRYLGSRSPEMPLTELLARPLDALDQ 606 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582 + ST + + + + + + L + DI+ + Sbjct: 607 RRIFTSTAKVGMRMISMTMGPVLKEDGQLLGALLVVRDITR--------------EIEAD 652 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 K++F+ +SHE+RTP+TAI GF++++ GPL N E+ N I + ++ ++N Sbjct: 653 RLKTEFIGTMSHELRTPMTAIKGFTQLLAMGGLGPL-NDTQREFVNTIHSNTERMIALIN 711 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LDI+KIESG ++L + + L E +S IS VQ + + + S +P + AD Sbjct: 712 DVLDITKIESGSVDLEWRSLHLVEVLSGVISEVQPAVSAREHELTISIPPGMPLVRADAH 771 Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST---------------THTSNEEVILRVRDTGVG 747 + QI N+LSNAI +TP GG+I + V + +RDTGVG Sbjct: 772 RLHQILFNLLSNAIKYTPKGGKISVEAYEARADELPDYLRSGVTAEKRYVQVNIRDTGVG 831 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + E+ + F + N +I GTGLGL L K +V+ GK ++ ST +G+ ++ Sbjct: 832 IDREEIGRIFDRFYRTENPLKIEAGGTGLGLSLVKPLVELLNGKIWVESTVGQGSTFSLL 891 Query: 808 FP 809 P Sbjct: 892 LP 893 >gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp. PR1] Length = 1356 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 91/411 (22%), Positives = 173/411 (42%), Gaps = 27/411 (6%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + + ++ ++ + + +I+ + G+ ++ +L N+ ++ GY + Sbjct: 704 FAQMLVNIQKRKQSEMRLFQQEEKFRNIISNMNLGLLEVDLNEHVLHANQTFCQMAGYEL 763 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 ED + + T L + +E + + + I Sbjct: 764 EDFIGRKATDLLLNESDKEKLLIKSESRKSGVSDSY--ELKYKRPNGEYRWWFISGAPNY 821 Query: 550 FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 DI++ K+ + +L ++ AEK K F A +SHEIRTP+ AI+G Sbjct: 822 NDKNELIGSIGIHLDITDQKRLEEELIRQREEAEKSKRAKEIFFANMSHEIRTPMNAIVG 881 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 E + N + +Y I S + ++ I+ D+LD+SK+E+GKM + Sbjct: 882 MGEQLAKSAL----NDQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGKMTIEAIGFKPK 937 Query: 666 EAVSEAISLVQLYANEKRILI-RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723 + +++ A K + ++ + I +L D + QI LN+LSNAI FT G Sbjct: 938 NIIEHTFEMMKAKAESKGLDYSILNYDSRINEVLIGDPIRISQILLNLLSNAIKFTEKGK 997 Query: 724 QI----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + IS S++E+ V DTG+GM + + + + Q + + GTGLGL Sbjct: 998 VVLQCHSIS-ETESHQEIKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLS 1056 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI----------IFPLYDTSHPHDCI 820 ++K +V G+ I S GT++ + P+ D+S ++ + Sbjct: 1057 ISKELVQLMGGQMKIESQKGLGTIVSVNFKLPKGQESDLPVEDSSSINEAL 1107 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 56/481 (11%), Positives = 133/481 (27%), Gaps = 54/481 (11%) Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 Y ++L P +S E + + Sbjct: 94 EYFEDQELLLFLGSPWFSSIEELVSNDLSISDFAALDPLVDLLHLIKNQELVTADLKELI 153 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + +D + G + YAN +L T+Y + I Sbjct: 154 ETISHQKESLENLSYVASANLDGI---IYTDEEGYITYANEGYLRQTQYDLSEIIGK--- 207 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCI---AASARLHTIQWNRENSLAMTFIPFEKAN 422 +L + L + + L + + ++ Sbjct: 208 -----TPLELGRGEETQKEELKKMLDSFFKKEPYKVELKHYKKDG-TWFWARVNGQAVSD 261 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + E + + + + +I+K K++ +LE + D + + S + Sbjct: 262 KNGEFLHYFTLVEDVTEEKISKNKIQEFEKTFRQVLEFSGDNVWEHDFRTNKTSFSNKAK 321 Query: 483 KLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 G + + + + + Q ++ + + ++ + Sbjct: 322 NFLGLTFDQSVNVGEVWNSHIHQEDYPILVENDLRYKR-GEISSHQLEYRMLHEDGSIKW 380 Query: 541 LRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 ++ + T DI+E K + +L K + D + VS+ Sbjct: 381 VKDRGIVIEKDPQGIPLKIIGTHSDITEQKNAEKELVSLNKKLGSVLNELKDVIWSVSY- 439 Query: 596 IRTP-LTAIIG--FSEVIKNQRFGPLG----------NPRYIEYANYIDRSGNLVLDIVN 642 P L+ I +E + L +P + + I + + Sbjct: 440 ---PDLSGIFFTPSAEDLFELDMDILLEDNSWRSKTIHPDDLHVLDTILEDVQENNEYIQ 496 Query: 643 D--LLDISK-----IESGKMNLHF-EPVSLDEAVSEA------ISLVQLYANEKRILIRT 688 + ++ SK + GK+ +PV ++ + + +L++ K ILI Sbjct: 497 EYRIITPSKKVKWVQDKGKLIFEDGKPVRINGILVDISERKKTEALLENQEKLKNILIDI 556 Query: 689 S 689 S Sbjct: 557 S 557 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 45/387 (11%), Positives = 111/387 (28%), Gaps = 30/387 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYG 145 D GY+ +E + ++IG ++ + +L + + Sbjct: 180 TDEEGYITYANEGYLRQTQYDLSEIIGKTPLELGRGEETQKE-ELKKMLDSFFKKEPYKV 238 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + +GT + + + +N EF + F +V + + + +K F Sbjct: 239 ELKHYKKDGT--WFWARVNGQAVSDKNGEFLHY--FTLVEDVTEEKISKNKIQEFEKTFR 294 Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNK---VSSLTEYYAHKDD--VLKTEK 258 + E + + FS ++ ++ V + + H++D +L Sbjct: 295 QVLEFSGDNVWEHDFRTNKTSFSNKAKNFLGLTFDQSVNVGEVWNSHIHQEDYPILVEND 354 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYF-----GTLQNNSKESFEYLSHRNHPSLSA 313 E SS + + + K K + + Sbjct: 355 LRYKRGEISSHQLEYRMLHEDGSIKWVKDRGIVIEKDPQGIPLKIIGTHSDITEQKNAEK 414 Query: 314 YFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 +++ + Y + + PS L + +E S + Sbjct: 415 ELVSLNKKLGSVLNELKDVIWSVSYPDLSGIFFTPSAEDLFELDMDILLEDNSWRSKTIH 474 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 L + I D + + I + + + + + N Sbjct: 475 PDDLHVLDTILE------DVQENNEYIQEYRIITPSKKVKWVQDKGKLIF-EDGKPVRIN 527 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSIL 458 GI + + + + +E + +L +IL Sbjct: 528 GILVDISERKKTEALLENQ-EKLKNIL 553 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 5/142 (3%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGK 146 +D + ++ ++ + G IG + D+ I + K + + Sbjct: 741 EVDLNEHVLHANQTFCQMAGYELEDFIGRKATDLLLNESDKEKLLIKSESRKSGVSDSYE 800 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G Y ++ P Y+ E G G + R ++ Sbjct: 801 LKYKRPNGE--YRWWFISGAPNYNDKNELIGSIGIHL--DITDQKRLEEELIRQREEAEK 856 Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228 K+ + + Sbjct: 857 SKRAKEIFFANMSHEIRTPMNA 878 >gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus lipocalidus DSM 12680] Length = 592 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 103/553 (18%), Positives = 202/553 (36%), Gaps = 37/553 (6%) Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN---LTPETVD 327 + + L ++ + +H P + + + T+ Sbjct: 71 AEVAGKDTQARITIVARTGEVLADSRQNPKTMANHGARPEVRGALNGEKTSIVRYSSTLH 130 Query: 328 KCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + I + G + +++ + TLL + + + Sbjct: 131 RYMIYAAVPIVKKGQIEGVVRV---SLPLAAINSLLRQLWAVTLLAMLAAALLSVLVGWW 187 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L + I + + + + + + + Sbjct: 188 LAKRLTKPIEEITEVAQAMAEGD----LKRRIRGQRDMGEVAILAQAMNRMVEKLDEKMN 243 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ +L ++L T +G+ I + G IL N A +L +D+ K Sbjct: 244 ELAATKNRLETVLTNTVNGVIFIGQGGDILYINPAARRLLDVGEKDVTGKHHVEVTRSYA 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEW 564 + ++ + Q L+K + K + I+ K + ++DISE Sbjct: 304 LADSVDFVFQ-----EGQPLKKEFVLHNLGGKAVETNIVPVKQEAGLQGVLVVLNDISEL 358 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + + DF+A VSHE+RTPL AI GF+E + + NP Sbjct: 359 KRLET--------------IRKDFVANVSHELRTPLAAISGFAETLMMENS---DNPAVQ 401 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 ++A I + +VN LL +SK+ES L E L + + + + +EKR+ Sbjct: 402 QFARIIYDEAQRMTRMVNSLLQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRL 461 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + N + AD + Q+ +N+L NA F+P G + + T E+++ V D Sbjct: 462 KVEVELPENGLVVRADRDRIVQVLMNLLDNATRFSPPDGTVTVRGTLLP-GEILVEVIDE 520 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ E + + F ++ ++ G+G GLGL + K +V+A+ G+ + S P G++ Sbjct: 521 GPGIPEEEAARVFERFYRVDKARTR-GQGVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVF 579 Query: 805 EIIFPLYDTSHPH 817 P + H Sbjct: 580 YFSLPGKRATDEH 592 Score = 39.2 bits (90), Expect = 2.8, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 14/241 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 I G + I+ + + + G +V+ + + + + + + Sbjct: 266 IGQGGDILYINPAARRLLDVGEKDVTGKHHVEVTRSYAL--ADSVDFVFQEGQPLKKEFV 323 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + G ++ +P+ G +G +V +N + R R D + H Sbjct: 324 LHNLGGKA----VETNIVPVKQEA----GLQGVLVV-LNDISELKRLETIRKDFVANVSH 374 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E++ +++ + + S P ++ ++ + + L + Sbjct: 375 ELRTPLAAISGFAETLMMENSDNPAVQQFARIIYDEAQRMTRMVNSLLQLSKLESVGAEL 434 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E+ D Q F + + E N + A D + +D Sbjct: 435 DQEEFDLGQCLDTVL---QGFEPRLSEKRLKVEVELPENGLVVRADRDRIVQVLMNLLDN 491 Query: 329 C 329 Sbjct: 492 A 492 >gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 7894] Length = 771 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 101/501 (20%), Positives = 175/501 (34%), Gaps = 27/501 (5%) Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + V HG L Y NPS L + Sbjct: 129 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRGLPFRDVYRAYDGRGARVR 187 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + + + + + + I + Sbjct: 188 ASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIE 245 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R ++ L ++EA+ D I + I S N A ++FGY + Sbjct: 246 RERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAML 301 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556 + L E + L ++ + + + + Sbjct: 302 IAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSL 359 Query: 557 TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 T+ D E ++ + + A++ A+ + K + LA VSHE+RTPL I G+ EV Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 ++N G L + + IDRS + +V D+LD S + +GK+ L PV L V+ Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 + + A I + A + D ++Q+ N+LSNA FTP GG++ +S Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + L V DTG G++ L + F + + G GLGL + + + + + Sbjct: 536 ERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594 Query: 790 GKFYIFST-PAKGTLIEIIFP 809 GK S +GT I P Sbjct: 595 GKVEAASAGKNRGTTFAITLP 615 Score = 65.8 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp] Length = 783 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 130/580 (22%), Positives = 234/580 (40%), Gaps = 24/580 (4%) Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 L E A L ++ L S S+L + N Q G+L+ Sbjct: 66 LAEAAASVRGYLLVQRSDFLPSYRSALERIDSTLRRLDNDIRDPQMRGSLERLRPLIVIK 125 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362 L A D+ +T VD + L ++ + Sbjct: 126 LEGLEQLKALASSDDRAAMTRILVDN--KHVLDALRQEIQQMLEREQTLLDERNAEA--- 180 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + S +L A L+ + + + + R +L IP Sbjct: 181 SAVRSRMLLATGLAAMFGVLGALFAVVLLSTGIVHRVQQVERNARRLALGQPLIPQ-GPA 239 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAV 481 +E +R + +L I++ + GI ++ G + S N Sbjct: 240 ADEIGQLAASLEEAGQLLAERERALRDNEERLRLIIDGVKEYGIFGLDPSGHVTSWNTGA 299 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ GY DIL + F++F + + + E+ ++ L Sbjct: 300 ERIKGYSEADILGRHFSLFYPPQARDTAPYL--ALQAATREGRYEEEAWRQRRDGSLFWA 357 Query: 542 RIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 ++I + +S DI++ + + L A++ AE S KS+FL+R+SHE+R Sbjct: 358 NVVITAQRDASGTLRGFSKITRDITDRRNAEAALRTAREEAENASRAKSEFLSRMSHELR 417 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL +I+GF+++++ R P + I R+G +L ++N++LDI++IESG++ L Sbjct: 418 TPLNSILGFAQLLEMDRGTPAQQAQVRH----ILRAGRHLLGLINEVLDIARIESGRLAL 473 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSN 714 EP+ L + E L+ A+ I +R +P + AD + + Q+ LN+LSN Sbjct: 474 SPEPLPLRPLLQEVSLLLSPQADSADIRLR--LPEELPAELCVQADRQRLVQVLLNLLSN 531 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI + GG + + ++ V L V D G G+ +LE+ PF ++ + EGT Sbjct: 532 AIKYNHPGGHVEVRVQ-ADSDTVTLSVIDNGPGIAAEDLERLFIPFERLGAAAS-EVEGT 589 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 GLGL L+K++++ G + STP +G+ + P Sbjct: 590 GLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLPRAQVH 629 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 31/307 (10%), Positives = 70/307 (22%), Gaps = 14/307 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G++ + + G ++G D ++ + Sbjct: 283 IFGLDPSGHVTSWNTGAERIKGYSEADILGRHFSLFYPPQARDTAPYLALQAATREG-RY 341 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + W ++ + GF I + A + ++ Sbjct: 342 EEEAWRQRRDGSLFWANVVITAQRDASGTLRGFSK--ITRDITDRRNAEAALRTAREEAE 399 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + K S + S ++ A +L+ ++ L Sbjct: 400 NASRAKSEFLSRMSHELRT-PLNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLIN 458 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-------G 318 E + + + L+ + + S + S L Sbjct: 459 EVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQADSADIRLRLPEELPAELCVQADR 518 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKL 375 + L ++ G T SV D A L L + Sbjct: 519 QRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLSVIDNGPGIAAEDLERLFIPFER 578 Query: 376 SDNNAIK 382 A + Sbjct: 579 LGAAASE 585 >gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1] gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 1099 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 186/385 (48%), Gaps = 21/385 (5%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 +++ + +L I E+ + I ++N G ++ N+ ++FGY +++ K ++F+ Sbjct: 324 KELLEKEERLSMIFESAPNAILLVNENGELILANKRAEEVFGYKENELIGKKLSLFIPDR 383 Query: 505 TPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD 560 +YL ++ ++ ++ KE K+L + I I K+ + D Sbjct: 384 FRKPYLNYLINEMNDNVNYPIKINDIQLKNKEGKILYVDISIGKIQNKENKVELIFIIKD 443 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K + + + AE+ + KS+ LA +SHEIRTPL A+ F ++++ +++ + Sbjct: 444 ITDRKLLEKERLK-RIAAEEANKVKSNLLATISHEIRTPLNAVTTFLDIMEERKYLKTED 502 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 S N++++++ND+LD+SKIESG L +SL + + + S+ + Sbjct: 503 ---KYLLEKTKYSSNILINLINDVLDLSKIESGNFKLVKNEISLIDLIIKITSIFENSLL 559 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK++ + ++P I D + QI +N++ NAI FT +G I++S + Sbjct: 560 EKKLKMYIDIPPDVPDKIKTDDLRLSQILINLIGNAIKFTDNG-YILLSVNLEKRNDKDI 618 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V+DTG+G+ ++ PF Q + GTGLGL + K +V+ G I Sbjct: 619 FLKITVKDTGIGIEEKNIKSIFLPFIQENVGDNKKYGGTGLGLAIVKLIVEKMGGTIKIE 678 Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820 S KG+ P+ +CI Sbjct: 679 SKKGKGSKFIFDIPV-------ECI 696 >gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei B7210] Length = 757 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 97 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 155 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 156 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 213 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 214 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 269 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 270 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 327 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 328 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 387 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 388 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 443 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 444 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 503 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 504 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 562 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 563 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 601 Score = 65.0 bits (157), Expect = 5e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 130 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 189 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 190 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 247 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 248 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 307 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 308 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 352 >gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 9] Length = 766 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 108 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 166 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 167 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 224 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 225 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 280 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 281 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 338 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 339 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 398 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 399 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 454 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 455 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 514 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 515 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 573 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 574 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 612 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 141 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 200 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 201 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 258 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 259 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 318 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 319 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 363 >gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei Pakistan 9] Length = 769 Score = 333 bits (855), Expect = 6e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910] Length = 1302 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 123/653 (18%), Positives = 244/653 (37%), Gaps = 29/653 (4%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G I + +R F + + H + + + + Sbjct: 270 GINITQRIEEKLKLESSERRFRSFFENAIGLMSMHDMEGNIIAVNEKGRETLQYSAEEVE 329 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE- 298 +L + K+ L + + + K Sbjct: 330 DLNLKDLVPEKNWHLLEQYLERINKNREDFGTMILKTKGGDEVIWMYHNLVEINKEGKPY 389 Query: 299 -SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356 L+ +L + + +T + + V N + S + K Sbjct: 390 VVSTALNVTERVTLEKDLVNTKKMLEQTSAVAQVGGWEVNLKNNTVIWSQSTREIHKIDK 449 Query: 357 --VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 D+E A G ++ + R+ + I L ++ + + Sbjct: 450 TFQPDLENALGF-------YSENSREKLESLFERAVKEGIPYDEELQLVRNDG--VMIWV 500 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + GI + + + ++ + L S + +A+++++ Sbjct: 501 RVKGIPEFEGGVCTRVYGIIQDIDNFKKVYLELARKEAMLQSFVAYVPATVAMLDKDLNY 560 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 LS +++ F ++ + + + P + L+ + + K Sbjct: 561 LSVSKSWKDEFQMNDIRLIGENMFK-ISPDVPDERIKIYRDALAGKAYKNEDMAIEIPGK 619 Query: 535 EE-KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 E + ++ + L + + +I+ + +L +AKK+A+ S KS+FLA Sbjct: 620 ESIQHYNVEVTPWYLSSNVIGGIIVAAQNITTSVKINKELKNAKKMADIASQAKSEFLAN 679 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL +IGFS+++ N +Y NYI+ SG +L I+ND+LD SKIE Sbjct: 680 MSHEIRTPLNGVIGFSDLLLKTPL----NEIQTQYLNYINESGENLLSIINDILDFSKIE 735 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710 SGKM L E ++ + VS+ I+++ + +K I + + +P I D +KQI +N Sbjct: 736 SGKMELSIEKANVYDIVSQVINVILYQSQKKNIELLLNIEPGLPETIWLDESRLKQILIN 795 Query: 711 ILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 +L NA+ FT G +I + + N + VRDTG+G+ + + F Q +S Sbjct: 796 LLGNAVKFTQEG-EIELKVEKLSIESKNITLRFSVRDTGIGIPKEKQKHIFNAFTQENSS 854 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHD 818 + GTGLGL ++ +++ + S +G+ + Y+ S H+ Sbjct: 855 ISKKYGGTGLGLTISNNILNYMGSSLSLVSELHQGSTFYFDIQVPYEMSERHE 907 >gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 791 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 103/410 (25%), Positives = 178/410 (43%), Gaps = 21/410 (5%) Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-E 471 + + G + + ++ + ++ + ILEA+SDG + Sbjct: 230 IWITELTPIEVEGKYKYIVGASKDITEQKLAENALKEYNERYALILEASSDGWFDWDLVN 289 Query: 472 GIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 ++ + R + FG E++ + + + ++ +L IL+ R+T E Sbjct: 290 NTVIYSRRWWLE-FGNDEKPENVPIDYWQSLIHPDDVGWVSEFLETILAS-QRETFEFTF 347 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 ++ + +S + D++E K+ + L +AK++AE + K Sbjct: 348 QMKKRKGNFAHVLSKCYIQRDASGNKIRLLGSNTDLTETKKIEYTLRYAKELAEAANIAK 407 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA +SHEIRTPL IIGF+E++ N EY I SG +L++VN +L Sbjct: 408 GNFLANMSHEIRTPLNGIIGFTELLLNSPL----QEEQKEYLKNIFFSGKSLLELVNQIL 463 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704 D SKI+SGK+ +L + V + L Q+ A K I + N+P+ + D + Sbjct: 464 DFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSAASKGIALHIQIDPNLPKYVSLDPLRI 523 Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-HTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760 +QI N++ NAI FT G + +S N + + V DTG+G+ + F Sbjct: 524 RQILSNLIGNAIKFTHEGS-VKVSLQQMERNGDYVTISFEVSDTGIGIDMNVGSRLFDSF 582 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 Q S + G+GLGL + ++ K I S KG+ FPL Sbjct: 583 SQADTSITRKYGGSGLGLTITNELLLKMNSKLTIQSELGKGSQFS--FPL 630 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 76/262 (29%), Gaps = 23/262 (8%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + Y + S LT Y S +E + + + + R Sbjct: 28 EILYTSRSIQTLTGYDSQYFLENKTSW-----QKFIYKEDRNLIKHALIAIQNNQKFRLR 82 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD----------TRINKRKMEI 449 L I +N + NQ + +GI + D ++ + + I Sbjct: 83 LRIITK-NQNIKYIECRGRLIHNQSNGSYRIDGIVTDISDLLPLYHLFQDESVDIKHLLI 141 Query: 450 EVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 E I + D + +I + + +I N A + G + I K L + Sbjct: 142 ENNM---IFNGSQDSMFLIEVKDDDQYVIRRINLAYERSTGIKLSMIQGKTPIELLGEEL 198 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 + + + + + E+ + ++ I+ DI+E K Sbjct: 199 GGTVINNFKKAIQSKKTISYEESFTMPAGTKIWITELTPIEVEGKYKYIVGASKDITEQK 258 Query: 566 QEKNKLSHAKKIAEKESSHKSD 587 +N L + SD Sbjct: 259 LAENALKEYNERYALILEASSD 280 >gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 1420 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 113/607 (18%), Positives = 224/607 (36%), Gaps = 33/607 (5%) Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 E + MK ++++ +Y + L ++ E + E+ Sbjct: 665 PFRSETASPAKARDAVGVTAMKRELAATRDYLQSLLEEHGRTNDALASTNEELVSGNEEL 724 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 ++N T K+ + + L RN + +D IP + Sbjct: 725 QSLNEELETAKEELQSTNEELTTVNDELHSRNQ-----ELNLANGDLVNLLDTVDIPVII 779 Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + P + D ++ + P L A Sbjct: 780 LDLERRIRRFTPKARSIMNVLPSDVGRPLEDITLNVSVPDLGAQVAEVMKT--------- 830 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 AR+ + + + ++E Sbjct: 831 ---ARVREFEVQNWTGHWFRMHLRPYKTPENRIDGAILSLVDIDALKHQVSQVEWARDDA 887 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYL 513 I+EA + +++ +LS N+A + + + + K + L Sbjct: 888 TGIVEAVQVPLVVLDGRMRLLSANKAFYQAYPASAAETVAKSLFELSGGAWDVPELRAAL 947 Query: 514 TEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKL 571 ++L+ + + LE + + ++ +SL L + DI+E KQ + + Sbjct: 948 GQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRELER 1007 Query: 572 -------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 AK+ AE+ + K FLA +SHE+RTPL+ ++ +++++ G + + + Sbjct: 1008 AELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDAKIK 1064 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+RS + + +++DLLD+S+I +GK+ + F+ V L V A+ V A K I Sbjct: 1065 RASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSI 1124 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 L T+ ++ + D ++QI N+L+NAI F+ G ++ + L+V D Sbjct: 1125 LFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLE-RMEGSARLQVSDR 1183 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803 G G+ L++ F Q +S G GLGL + + +V+ + G S +G + Sbjct: 1184 GAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1243 Query: 804 IEIIFPL 810 +I PL Sbjct: 1244 FTVILPL 1250 >gi|220908950|ref|YP_002484261.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865561|gb|ACL45900.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1432 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 120/792 (15%), Positives = 260/792 (32%), Gaps = 66/792 (8%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRT---VRFTWNIDAHGYLKEISEELPKTIGNYAFK 112 D + +SE F R+ + D H +S + A Sbjct: 541 DVTDRKAAELALQESETKFRRLTENVPGMIYRYVVHPDGHDAFTYVSPRCQEIYELDAET 600 Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 ++ + ++ + + + I + I +LP Sbjct: 601 IL-QDSRVLWSMVDPEDVPRLEAGIAISAQHLSPFFVEHRIHTPSGMKWIQAISLPERME 659 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 N + G++ + +++ ++ + S Sbjct: 660 NGDLV---WDGLIIEVTEHKRLARALQESEERRRLALDLTETGSWEFDVVTGEAIWSDSH 716 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-------EESSLPEQEDFHTINLNQYT 284 + M L Y D + E + + + L + N Sbjct: 717 -YRLMGLMPGELPSNYQTWRDRVHPEDLVWVEAVCSHALATHALLNVEYRVVYPNGTVRW 775 Query: 285 KKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-G 339 + + S ++ L + + E E + P+ F G Sbjct: 776 VLNKGQGVYDTSSQAVRMLGVMMDITDRKAAEKALIESEARYRLLCESLPVGIFRNDLQG 835 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 N Y+NP L + + + G L + A + + + Sbjct: 836 NNTYSNPKTLEMVGLSFEESL-GDGWAKYLHPNDRDRMYAAWSNFVEQINRGEAASYQLE 894 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 L + + + + + N + G + +I ++ + + ++++ Sbjct: 895 LRYL-YPNGSLRWVLAQAVPEYNGSGQLTGFVGSAVDITPQKIAEQTIRSQ----AALID 949 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 TSD +++ + + IL NRA K++G+ ++L + T L P+ + +L+ Sbjct: 950 ITSDAMSVRSLDNEILFWNRAAEKIYGWTANEVLGQHATHLLY-RDPAQLEPAFQAVLAE 1008 Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575 D + + TK + L++ + + DI+E KQ +++ A+ Sbjct: 1009 D---SWQGELSAVTKTGQELTIASRWTLMRNGEGQPEAILIVDTDITEKKQLESQFLRAQ 1065 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 ++ + ++H++ LT I+ S++++ Q R E I+ + Sbjct: 1066 RL-----ESIGTLASGMAHDLNNMLTPILASSQLLQKQ----FPEGRSQEILKIIEANAR 1116 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 D++ +L ++ GK P+ + ++E + + K I I + + Sbjct: 1117 RGADLIRQVLTFARGTEGK----RIPLQVKHLLTEIQQICERTFP-KSITIVLDVVSTLS 1171 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------------THTSNEEVILRVR 742 ILAD + Q+ +N+ NA GGQ+ + S +++ V Sbjct: 1172 TILADPTQLHQVLMNLCVNARDAMSVGGQLQLRLEDFFIDENYARLLALQSGAYIVITVA 1231 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+ LE+ PF G+GTGLGL +A+ ++ ++ G + S G+ Sbjct: 1232 DTGTGIAPEVLERIFDPFFTTKA----VGQGTGLGLSVAEGIIRSHGGIITVESEVGHGS 1287 Query: 803 LIEIIFPLYDTS 814 ++ P TS Sbjct: 1288 QFKLYLPAATTS 1299 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 34/356 (9%), Positives = 95/356 (26%), Gaps = 21/356 (5%) Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 SL H DD + E T + F+ + N + + +++ + + Sbjct: 216 SLWRSRVHPDDRDQIEAAIANTMAAEPNTLEYRFYRKDGNLAWVSTTYTSRRDDELDCWI 275 Query: 302 YLSHRNHPSLSAYFDEGENLTPE----TVDKC-----PIPFFVYSHGNLFYANPSFLLLT 352 + + + + +D + F Y + + L Sbjct: 276 VTAISTDITDRKQLELSLQASERKLNYILDNVVASIVTMRVFADRDWEYDYHSAGYERLF 335 Query: 353 KYKSVDD-IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 Y + ++ LS + + + + + I + + L Sbjct: 336 GYSDEELKVDKTLWLSRVFPEDRATILMPLFEAFF-----SEINVTVEYRFYHKDGS--L 388 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + P+ + + D + + ++ + +EA G N Sbjct: 389 LWISSSYASERIAPDCWIVTALSHDITDRKTTEIALKESEERFRLAVEAARMGTWDWNIL 448 Query: 472 GIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + + ++ L G R+ + + + L L+ +E Sbjct: 449 TNEVIWSESMEGLMGMAPGSFDRRMETVVEMIHPDDLVRVQAALNNSLAHGADYVIEFRF 508 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + R + + D+++ K + L ++ + + Sbjct: 509 IKLDGSVRWAMSRGNVLRDGHDRAVRMLGVDVDVTDRKAAELALQESETKFRRLTE 564 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 46/528 (8%), Positives = 135/528 (25%), Gaps = 35/528 (6%) Query: 77 DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHI 133 + +VRF D S + G A + I D I Sbjct: 177 NAAIASVRFF--SDHLFEYDYCSAGNAQVFGYSAQEFISNSSLWRSRVHPDDRDQIEAAI 234 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + + + + + +G +V R+ E + I Sbjct: 235 ANTMAAE-PNTLEYRFYRKDGNLAWVSTTY----TSRRDDELDCWIVTAISTDITDRKQL 289 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTE 245 + ++K +++ + + D + + + KV Sbjct: 290 ELSLQASERKLNYILDNVVASIVTMRVFADRDWEYDYHSAGYERLFGYSDEELKVDKTLW 349 Query: 246 YYAHKDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 + T PL + E ++ + F+ + + + + + Sbjct: 350 LSRVFPEDRATILMPLFEAFFSEINVTVEYRFYHKDGSLLWISSSYASERIAPDCWIVTA 409 Query: 304 ---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359 + + E E V+ + + ++ N + S L Sbjct: 410 LSHDITDRKTTEIALKESEERFRLAVEAARMGTWDWNILTNEVIWSESMEGLMGMAPGSF 469 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + ++ L A L I + Sbjct: 470 DRRMETVVEMIHPDDLVRVQAALNNSLAHGADYVIEFRFI-----KLDGSVRWAMSRGNV 524 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--AIINREGI--IL 475 + + G++ + D + + ++ + + E I +++ +G Sbjct: 525 LRDGHDRAVRMLGVDVDVTDRKAAELALQESETKFRRLTENVPGMIYRYVVHPDGHDAFT 584 Query: 476 STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 + +++ E IL+ + ++ + + +E + Sbjct: 585 YVSPRCQEIYELDAETILQDSRVLWSMVDPEDVPRLEAGIAISAQHLSPFFVEHRIHTPS 644 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + ++ + + + + +++E K+ L +++ Sbjct: 645 GMKWIQAISLPERMENGDLVWDGLIIEVTEHKRLARALQESEERRRLA 692 Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats. Identities = 38/387 (9%), Positives = 103/387 (26%), Gaps = 20/387 (5%) Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 ++ K ++ ++ P + + + + + P+L +E Sbjct: 60 DVVKATATCIDLAATSIAEVMTQPVVTVTWSEELTIQRALSRMAEQQVHHLPILDAEHQL 119 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTPETVD 327 L + ++ G + ++ + + L Sbjct: 120 LGIITQEQLLQAIGRPEQWKVGNCLQQQLQWQTQNCDQLERVLQASAINLKDMLNSANAA 179 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + FF Y + + Y + + I L P D Sbjct: 180 IASVRFFSDHLFEYDYCSAGNAQVFGYSAQEFISN-SSLWRSRVHPDDRDQIEAAIANTM 238 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 ++ + N ++ + + + I + D + + + Sbjct: 239 AAEPNTLEYRFY-----RKDGNLAWVSTTYTSRRDDELDCWIVTAISTDITDRKQLELSL 293 Query: 448 EIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDI---LRKPFTVF 500 + +L IL+ I + +R+ + +LFGY E++ + Sbjct: 294 QASERKLNYILDNVVASIVTMRVFADRDWEYDYHSAGYERLFGYSDEELKVDKTLWLSRV 353 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLT 557 ++ +++ S + K+ LL + + + Sbjct: 354 FPEDRATILMPLFEAFFS---EINVTVEYRFYHKDGSLLWISSSYASERIAPDCWIVTAL 410 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH 584 HDI++ K + L +++ Sbjct: 411 SHDITDRKTTEIALKESEERFRLAVEA 437 >gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 1071 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 126/737 (17%), Positives = 264/737 (35%), Gaps = 51/737 (6%) Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-------YVPIDLAA 165 ++ + D+ D+ +D ++ + L G+ + +AA Sbjct: 197 LLHRHVSDLLDVAKLDAGR-----METRYARADVARLARFMGSCFESLAREKRIRFTIAA 251 Query: 166 LPIYSRNREFSGFRGFG---IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 S + R + + + D A+ RL++ + + Sbjct: 252 PERLSAAVDVEKVRRILQNLLSNAFKFTPDGGAVDVRLEEDGDWVAMTVADNGPGVPPAL 311 Query: 223 D---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 + ++ + L A + VL L S Sbjct: 312 RQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLPRKA 371 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRN-HPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338 + + ++ A + V+ P Y Sbjct: 372 PDGVVVHDAPEEMDAAAEAPVPPEPVPGLRRPARADGPPADAPLVLVVEDNPD-MRDYLG 430 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G L + + + ++ + ++ + + + V R + Sbjct: 431 GILGGRYRTAMASNGREGLEA-ALVLHPDLIVSDVMMPEVSGQDMVRELRRNAAMDDVPV 489 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE--PEDVDTRINKRKMEIEVMQLCS 456 + T + + E + + + P + + D + R M I + + Sbjct: 490 VMLTAKADDELARTLIAERVQDYLVKPFDARELLARVGRLLADKGRHARNMWISERRFQA 549 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 E + GIA+++ +G L NR + + GY E+++ F + ++ Sbjct: 550 TFELAAVGIALVSPQGRWLRVNRKLCDIVGYAAEEMVGMTFQKITHPEDLESDMALVQQV 609 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 L + T + K+ ++ + + + + ++ + + DI K + +L Sbjct: 610 L-GGVTNTYNREKRYIRKDGTVVWINLTVALVRDAAGAPDYFISVVEDIDRRKAIEEQLR 668 Query: 573 HAK--------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 +K + AE + KS FLA +SHEIRTPL ++G +++K Sbjct: 669 LSKDDLERAARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTTVL--- 725 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +EYA+ RSG + ++ D+LD+S+IE+ +M L P L + + Sbjct: 726 -DEEQLEYADMAIRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPL 784 Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN-- 734 EK + + A ++P +L D V+QI N+ NA+ FT +G + +S+ + + Sbjct: 785 VREKGLPLACRAAPDVPGVLVGDEMRVRQILFNLTGNAMKFTEAGSVAVEVSSLASPDPG 844 Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 ++ V DTGVG+ + +++ +PF Q +S +G GLGL +++ + + G Sbjct: 845 QARLLFTVADTGVGIPDDKIDTVGEPFTQADSSYTRDQQGAGLGLTISRQLTELMGGTLT 904 Query: 794 IFSTPAKGTLIEIIFPL 810 I S P +GT + ++ PL Sbjct: 905 IESEPGQGTTVYLMLPL 921 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 6/246 (2%) Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + +++ + + + K+ F A VSHE+RTPLT I+G +R + Sbjct: 129 LRAANEEITRLYEKTRELDALKTRFFANVSHELRTPLTLILGP----LARRLEACADDAA 184 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++R+ L+ V+DLLD++K+++G+M + + S + A EKR Sbjct: 185 RADLRVMERNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKR 244 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + + + D+ V++I N+LSNA FTP GG + + + V + V D Sbjct: 245 IRFTIAAPERLSAAV-DVEKVRRILQNLLSNAFKFTPDGGAVDVRLE-EDGDWVAMTVAD 302 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G G+ + + F Q+ R GTGLGL +A+ + G + ++P G Sbjct: 303 NGPGVPPALRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGAS 362 Query: 804 IEIIFP 809 + P Sbjct: 363 FTVTLP 368 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 25/248 (10%), Positives = 63/248 (25%), Gaps = 14/248 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146 + G ++ +L +G A +M+GM ++ ++ + + + NT+ + Sbjct: 561 VSPQGRWLRVNRKLCDIVGYAAEEMVGMTFQKITHPEDLESDMALVQQVLGGVTNTYNRE 620 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +GT V I+L + F +V + Sbjct: 621 KRYIRKDGT--VVWINLTVALVRDAAGAPDYF--ISVVEDIDRRKAIEEQLRLSKDDLER 676 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEKYP 260 + + S ++ ++ L + ++ L+ Sbjct: 677 AARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTTVLDEEQLEYADMA 736 Query: 261 LLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + L + D I + L + E + Sbjct: 737 IRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPLVREKGLPLACRA 796 Query: 319 ENLTPETV 326 P + Sbjct: 797 APDVPGVL 804 >gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase [Lactobacillus jensenii SJ-7A-US] Length = 618 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 89/433 (20%), Positives = 179/433 (41%), Gaps = 38/433 (8%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 R+ +Q + ++ + V+ + E E +L S Sbjct: 209 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 264 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L +DG+ +R G ++ N+ ++ + KP T L + Sbjct: 265 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKILGLADDVSAQELI--- 321 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574 +Q + T +E +L + + F S +HD++E ++ +N+ Sbjct: 322 ---GNQQEMMITVNEGTPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 374 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + F++ VSHE+RTPLT++ + E + + + ++ Sbjct: 375 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 422 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV---------QLYANEKRIL 685 ++ ++NDLL +S+++ G + E V+ ++ +S ++ + EK+ Sbjct: 423 ERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYS 482 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I+ N + D + Q+ NI++NAI ++P GG I + + + N ++IL + D G Sbjct: 483 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQN-QIILSISDQG 541 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ +L K F ++ ++ GTGLGL +AK +V+A+ G+ + S KG+ Sbjct: 542 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 601 Query: 806 IIFPLYDTSHPHD 818 I P S D Sbjct: 602 ISLPFEPMSEEDD 614 >gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans JCM 2831] Length = 1157 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 125/702 (17%), Positives = 245/702 (34%), Gaps = 60/702 (8%) Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 + L + + +ALP F + + ++++ L E Sbjct: 239 SGLILEVRCSALP---DGGTVLTFG------DVTQNRIAERALEESERRYRLLAENATDI 289 Query: 215 SSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSL 269 + ++ + + + H D+ + L S Sbjct: 290 IIWSDLTARRRYVSPAVRAVLGYDPQDLIGTHPLDFVHPDEVGAYRRVLDELTGGRASRA 349 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + F + + + + E Sbjct: 350 LTSQRYRHRDGHWVWLEISFSLTHDRATGAPDGYVATLRDVSARKAAEDALRLSEARYRA 409 Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 D P ++ S G+ Y N F G + + ++A + Sbjct: 410 LADALPQLVWIASIETGDASYVNRRFEDYYG---------PIGPTRAARIARTHPDDAER 460 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 L+ T A +Q + + + G + + Sbjct: 461 MERLWSEAPTRRAPYEVEGRLQRHDGPYRWHKIVLLPIWQGE-TMVGMLGTALDIDEIVT 519 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +R++E L +A G ++ + G I + ++L G + +L Sbjct: 520 ARREVEAASSLLHLAQQAAHAGTWHLDLDSGRIE-WSPESARLHGIETDRNHVLDTRDWL 578 Query: 502 EQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMH 559 + + +T T + + + + + Sbjct: 579 ALIDRGDGERAMEIAAAAAAAGETFSIEFRVPTPDGGVRWINGVGRGAPGQARRMIGLNI 638 Query: 560 DISEWKQEKNKLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D++ K + L AK AE+ S+ KS+FLA +SHEIRTPL +IG+++++ + Sbjct: 639 DVTARKAAEAALLDAKAAADAACLQAERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLD 698 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 G P A+ I +G +L +VND+LD SK+E+G++ + P +++ + A+ Sbjct: 699 ---GTDLGPAARRNADRIRTAGAALLTVVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAV 755 Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 S+V+ A K + + + +P I D ++QI LN+L+NA+ FT SGG I +S Sbjct: 756 SIVRPSAERKGLALTVALGPGLPDWIEGDEDRLRQILLNLLNNAMKFTASGG-IDLSVRV 814 Query: 732 TSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + VRDTG+G+ + ++ + F Q+ S GTGLGL ++K++ Sbjct: 815 SPDAASATGGTRLRFAVRDTGIGIPTDKCDRLFRRFSQVDGSISREYGGTGLGLAISKSL 874 Query: 785 VDANMGKFYIFSTPAKGTLIEII------FPLYDTSHPHDCI 820 V G + ST G+ FP + P I Sbjct: 875 VTLMGGTIGVASTVGHGSTFWFEADLPAAFPPARETAPASAI 916 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 53/518 (10%), Positives = 121/518 (23%), Gaps = 35/518 (6%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------- 139 W +D S L + +G + L + H D + L+ Sbjct: 35 WRLDPCTRRVTRSANLARLLGTPGA--CDLPLAEHVACYHPDDRAALVARLEGILEGSRP 92 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + + +GT L I LP + G ++ + Sbjct: 93 AIPYQARARVVRPDGTVLDAIIQ--GLPESGPDGALVALHG--LILDVTDLVQSERRARE 148 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--------HLRMKNKVSSLTEYYAHKD 251 D + + V + + LR + + Y + Sbjct: 149 TDMILRGTLDSMEQGLVVLDAGRRVRAFNRSAADLLDLPDDILRAGVALPDIHAYQRARG 208 Query: 252 DVLKTEKYPLLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 D + P + P F + + L + +N + Sbjct: 209 DFAEAGSDPGFATAGRGRGPLPPLFDWRLPSGLILEVRCSALPDGGTVLTFGDVTQNRIA 268 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 A + + I + Y +P+ + Y D+ L + Sbjct: 269 ERALEESERRYRLLAENATDIIIWSDLTARRRYVSPAVRAVLGY-DPQDLIGTHPLDFVH 327 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + R+ R + R + Sbjct: 328 PDEVGAYRRVLDELTGGRASRALTSQRYR----HRDGHWVWLEISFSLTHDRATGAPDGY 383 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPV 489 + + + + + + ++ +A + I + E G NR +G Sbjct: 384 VATLRDVSARKAAEDALRLSEARYRALADALPQLVWIASIETGDASYVNRRFEDYYGPIG 443 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + M +E + E + +I++ + Sbjct: 444 PTRAARIART--HPDDAERMERLWSEAPTRRAP--YEVEGRLQRHDGPYRWHKIVLLPIW 499 Query: 550 FSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 T DI E + ++ A + Sbjct: 500 QGETMVGMLGTALDIDEIVTARREVEAASSLLHLAQQA 537 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 29/247 (11%), Positives = 78/247 (31%), Gaps = 11/247 (4%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L D+ +A ++ P + + R I AR ++ + Sbjct: 50 LARLLGTPGACDLPLAEHVACY--HPDDRAALVARLEGILEGSRPAIPYQARARVVRPDG 107 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 L ++ + +G+ + D ++R+ M L L++ G+ + Sbjct: 108 -TVLDAIIQGLPESGPDGALVALHGLILDVTDLVQSERRARETDMILRGTLDSMEQGLVV 166 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLR 522 ++ + + NR+ + L P + + + + + + R Sbjct: 167 LDAGRRVRAFNRSAADLLDLPDDILRAGVALPDIHAYQRARGDFAEAGSDPGFATAGRGR 226 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 L + +L +R LT D+++ + + L +++ + Sbjct: 227 GPLPPLFDWRLPSGLILEVRCSALP---DGGTVLTFGDVTQNRIAERALEESERRYRLLA 283 Query: 583 SHKSDFL 589 + +D + Sbjct: 284 ENATDII 290 >gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase [Thermosediminibacter oceani DSM 16646] Length = 586 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 163/364 (44%), Gaps = 27/364 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E QL ++L + +DG+ ++ G +L N +L G + LE Sbjct: 238 ELSQEKNQLRNVLLSMTDGVITLDSSGRVLMANPQAEELLG------NGPQGSFDLELTV 291 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 V+ + + E G +L L + + D++ K Sbjct: 292 EQVLGELVQRVKHNKKSLQDEVKVEGRILSVRLAPL---LNDESEVWGVVAVLQDVTREK 348 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + S + +F+A VSHE+RTPLT + G++E + + + Sbjct: 349 KLE--------------SLRREFVANVSHELRTPLTYLQGYTEALIDGMV--KQPEEKKK 392 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y N I + +VNDLLD+S +E+G + L + +SL++ + I V A +KR+ Sbjct: 393 YLNIILEETLRLRRLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKKRVN 452 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 I +P I AD ++Q+ +N++ NA+ +T +GG+III + E V + V+D G Sbjct: 453 ITAEL-KELPLIYADEDRMEQVLINLIDNALRYTENGGEIIIEAS-AGTESVTVCVKDRG 510 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ EL + F ++ ++ GTG+GL + K +++A+ GK + + G + Sbjct: 511 PGIPEDELPFIWERFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAVFC 570 Query: 806 IIFP 809 P Sbjct: 571 FNIP 574 >gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 599 Score = 333 bits (854), Expect = 7e-89, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 169/369 (45%), Gaps = 22/369 (5%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + ++ + + I + + G I+ N A KLF D+LR + T + Sbjct: 245 QQEEWFKAVFSSIREAIIVTDPRGSIILANPAACKLFKLQCGDMLRSRPGRKV---TNAQ 301 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQE 567 + + E++ + + + E++L + + K +S ++DI+ + Sbjct: 302 LLDLFERVRLSSKPIVKEEMLVMTERGERVLQTSAMPVIKDSYSDGTVFVLNDITRLRNL 361 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + + DF++ VSHE+RTPLT+I G++E + + + Sbjct: 362 E--------------RIRRDFVSSVSHELRTPLTSIKGYTETLLEGALD--DREDAMNFL 405 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I + + ++ND+LD+SKIESG++ F PVS+++ V + ++L + +K I ++ Sbjct: 406 RIILQESEQLTALINDVLDLSKIESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQ 465 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGV 746 ++P + AD ++ + N+L NAI + G+I I +N+ V L V D G Sbjct: 466 IQIPGDLPPVFADKDYLEIVVRNLLDNAIKYVADDSGRIRI-IAFPANDMVRLEVEDNGA 524 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + + F ++ ++ + GTGLGL + K +V ++ G + S G++ I Sbjct: 525 GIPQKDLGRIFERFYRVDKARSRQIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSI 584 Query: 807 IFPLYDTSH 815 P+ Sbjct: 585 TIPVASPQQ 593 >gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei MSHR346] gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei MSHR346] Length = 771 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|332141178|ref|YP_004426916.1| putative two-component member protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551200|gb|AEA97918.1| putative two-component member protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 1111 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 109/505 (21%), Positives = 208/505 (41%), Gaps = 19/505 (3%) Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E E + D V G + ANP+ + YK + I S ++ Sbjct: 263 VRAIESERIQRAITDTAVDAIMTVNDKGIIKTANPAVEHIYGYKPDELIG--LHASEIVP 320 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + I + ++ E + + K + P + Sbjct: 321 HERRHLYDDDFFSQRVVPTEQIIGTGREVEILRKGGEKIPVRLGVGYTKIDGKPVFVSFA 380 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYP 488 + + + + + S++ G+A +N G ++ + AV+++ GY Sbjct: 381 ---SDLRKRKEIEDALRESEAKFRSLISNIP-GVAYRCLNMPGWPMVFISDAVTEVTGYS 436 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ED + L + S + E + + E K ++ + K Sbjct: 437 PEDFVLPDPKRSFSDLYHPDDVERLCNVNSDGGPFSYEYRIVAKSGEVKWVTEHGVHVKD 496 Query: 549 PFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + + DI++ + +++L AK+ AE+ ++ ++ FLA +SHEIRTP+ AIIGF Sbjct: 497 EDGNVLYVDGFISDITQRRVMEDELKAAKEKAEQAAAARTAFLANMSHEIRTPMNAIIGF 556 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 S+++ + + I+RS +L ++ND+LD +K++ GK++L + + E Sbjct: 557 SDLMLGEAL----RDEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLDYRDFLIRE 612 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +S L A K++ + + ++ ++Q+ N++ NA+ FT G ++ Sbjct: 613 ELDLVVSTFWLEAKRKKVDLVLNVDASVADGYRGVPERMRQVLNNLIGNAVKFTHEG-KV 671 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I+ + E V V DTG+GMT +L+ PF Q S + GTGLG ++K +V Sbjct: 672 EIAVR-SEGELVYFDVSDTGIGMTKAQLDNVFDPFSQADASMSRKYGGTGLGTTISKQLV 730 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + G S KGT PL Sbjct: 731 ELMGGNICATSEEGKGTTFTFRLPL 755 >gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110] Length = 1497 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 97/655 (14%), Positives = 226/655 (34%), Gaps = 46/655 (7%) Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243 + N R + + + + + + ++L Sbjct: 712 IQELTQLNADIDNLLRSTDIGVIFLDRQFNIRKFTPAATRAVNIKPSDIGRPLTDLTNNL 771 Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303 L + T++E E + + Y +++ ++ Sbjct: 772 NCPN------LIDIVQQVATTQEPYEQEVTISPSHDYLLMRVHPYLQNDKDSEGIVMTFV 825 Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362 + + + L + + P ++ N + + I Sbjct: 826 QVNELKQVQQHLKQANILLEKLYEASPAGLCLFDQELKFIRVNQALSRINGVS------I 879 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 G L L ++ ++ + + + I + + Sbjct: 880 EGHLGKTLHDIAPQLAEYLEGILQQVINTGEAICNIEVRGIMPATPEVERCWIASYYPVD 939 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS------ 476 + + E + + M+L G + E + Sbjct: 940 FINDGRGVGAVVVEITQRVQAEVALRNSQMRLQEAQRLAKVGNWELKYEENLTLATAKPD 999 Query: 477 TNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 ++ + +++ + + + + ++ + L+ S + Sbjct: 1000 CSKELYEIYQLDPQPSSPSLEDILECYPPADRQALENAFQLLIFHGIPFGLDVELHISEQ 1059 Query: 535 EEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE----------S 582 + L++ + + + T+ DI+E K+ + +L + E+ + Sbjct: 1060 DIHSLNVIGQVIRDKDGQILKFYGTVMDITERKRIEQELVRRNQALEEAIAVAQVADSAN 1119 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTP+ +I+ ++++ + + + + + N +L+I+N Sbjct: 1120 QAKSEFLANMSHEIRTPINSIMLVGQLLEGTKLDT----QQKKLLQTLTNNSNHLLNIIN 1175 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADL 701 D+L +SK+ES + L P L+E E + A K I + + A+++P + + D Sbjct: 1176 DILSLSKLESRSLELEHRPFHLNEMFQELSNTFTPQAQSKEIGLTFTIASDVPDVLMGDD 1235 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNYELE 754 ++Q+ N++SNAI FT SG Q+ ++ + + + V+DTG+G+ + E Sbjct: 1236 FRLQQVFRNLISNAIKFTSSG-QVTVNASCDRDSVSEKSQVNLYFTVQDTGIGIDPAKQE 1294 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +PF Q NS + GTGLGL + + ++ G+ + S +G+ + P Sbjct: 1295 DLFQPFVQADNSTTRQFGGTGLGLTICRRIIQTMNGEIGLDSIVGEGSTFWLKIP 1349 Score = 55.4 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/292 (10%), Positives = 76/292 (26%), Gaps = 22/292 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D +++ L + G +G L D++ L + ++ Sbjct: 859 DQELKFIRVNQALSRINGVSIEGHLGKTLHDIAPQLAEYLEGILQQVINTGEAICNIEVR 918 Query: 150 --WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 P I + P+ + + G +V + + AL + Sbjct: 919 GIMPATPEVERCWI-ASYYPVDFINDGRGVGAV---VVEITQRVQAEVALRNSQMRLQEA 974 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----------KVSSLTEYYAHKDDVLK 255 K G+ ++ E+ + P + + + E Y D Sbjct: 975 QRLAKVGNWELKYEENLTLATAKPDCSKELYEIYQLDPQPSSPSLEDILECYPPADRQAL 1034 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + LL + H + ++ +++ + ++ + Sbjct: 1035 ENAFQLLIFHGIPFGLDVELHISEQDIHSLNVIGQVIRDKDGQILKFYGTVMDITERKRI 1094 Query: 316 DEGE-NLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIA 363 ++ + + S F AN S + T S+ + Sbjct: 1095 EQELVRRNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVGQL 1146 Score = 52.7 bits (125), Expect = 3e-04, Method: Composition-based stats. Identities = 34/266 (12%), Positives = 85/266 (31%), Gaps = 15/266 (5%) Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + R + + N + ++ + + Sbjct: 646 SELEQELQQTRENLQVTIEELETANEEQQATNEELLASNEELQSTNEELQSVNEELYTVN 705 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + +++ + ++L +T G+ ++R+ I A ++ DI +P Sbjct: 706 AEHQSKIQELTQLNADIDNLLRSTDIGVIFLDRQFNIRKFTPAATRAVNIKPSDI-GRPL 764 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSL 556 T + + ++ + ++ E+ + + + L+ + ++ S + Sbjct: 765 TDLTNNLNCPNLIDIVQQVATT--QEPYEQEVTISPSHDYLLMRVHPYLQNDKDSEGIVM 822 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI-----RTPLTAIIGFSEVIK 611 T ++E KQ + L A + EK L E+ L+ I G S Sbjct: 823 TFVQVNELKQVQQHLKQANILLEKLYEASPAGLCLFDQELKFIRVNQALSRINGVS---I 879 Query: 612 NQRFGPLGN---PRYIEYANYIDRSG 634 G + P+ EY I + Sbjct: 880 EGHLGKTLHDIAPQLAEYLEGILQQV 905 >gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1] Length = 1426 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 110/676 (16%), Positives = 234/676 (34%), Gaps = 54/676 (7%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS-- 242 RV + + + L E + I S + K +V Sbjct: 328 IRVSMVRQREVMAHQSRITALVESSADGIISKNLDGVIVSWNKGAESIFGYTKEEVVGQK 387 Query: 243 -LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 L + + ++ S+ + T F + N+ Sbjct: 388 VLDLLVPPPLQDEDKSIFSSVKDKKESISIETRRTTKAGTDVPVSLTFSPIFNDDDGIIG 447 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDK-----------------------CPIPFFVYSH 338 S + ++ + Sbjct: 448 VSQSVRDISERKKAEAKIRELNTNLENQVKERTAELLELNLLLNDVVNASSEVSIIATDT 507 Query: 339 -GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP---------KLSDNNAIKPVMLYR 388 G + N + Y + + + + + + K + + + + Sbjct: 508 KGIITLFNHGAQKMLGYTAEEVVGQRTPVGFHIQSEIELQRADIFKATGTHVTDNLEVLI 567 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++ T + ++ + + E + GI + + + +R++ Sbjct: 568 FKALHENFDSQEWTYVAKNGVARPVSLVITPMKSSDDEVIGFLGIAMDISEQKTTQRELI 627 Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQN 504 QL E GI + E L + ++ +++ + I + + + Sbjct: 628 STRDQLLLAAEVAELGIWTWDIEDDTLEWSDSMFEIYHLSKSQKQDGIKYADWYNRVHPD 687 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDIS 562 + + L E + L + + + R + K + DI+ Sbjct: 688 DRDMAENALKEAVEGINEYNLVFRIVLPDDSVRFIFARASLHKNAEGKMTKVTGINRDIT 747 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + + ++ L AK A+ S+ KS+FLA +SHEIRTP+ AI+G ++K + Sbjct: 748 QERGLEDWLRKAKDEADAASAAKSNFLANMSHEIRTPMNAILGMLHLVKRTTLTH----Q 803 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 +Y + S +L ++ND+LD SK+++GK+ L P ++E + E +++ + EK Sbjct: 804 QNDYVSKAQISAKSLLSLINDILDFSKVDAGKLELEKAPFEVEELLCELSTVLSGSSLEK 863 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738 + + +IP ++ D + QI +N++SNA+ FT G ++ + + V Sbjct: 864 DVELIFDIDKDIPAYLIGDKLRLLQILINLVSNAVKFTLEGSVVLEIKQLSIDPRVSRLS 923 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V+DTG+G+ +++ F Q +S R G+GLGL + + V+ G + S Sbjct: 924 VSVKDTGIGIAKDQIDSIFDVFSQGESSTARRFGGSGLGLVICRRFVELMGGSLQVDSVL 983 Query: 799 AKGTL--IEIIFPLYD 812 +G+ I P+ D Sbjct: 984 GEGSRFYFTIDLPIAD 999 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 47/422 (11%), Positives = 117/422 (27%), Gaps = 38/422 (9%) Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 + EF+G RGFG + + + + + E Sbjct: 93 RDVDNEFAGARGFGFIRRVPQSSVDNFTSLARQDGWPDFYIKMLNPNFNEHYVIQYI--- 149 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P R + V ++ + + Y + + + Sbjct: 150 --EPVERNRQAVGLDIASEKNRREAATSSLYSGEVRLTGPITLVQASGKPQQSFLILMPI 207 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 + ++ + L E + Y Y Sbjct: 208 YRG-------GSTPVTQAERIEKGFGWSYAPLLMEEVLAGLN-----YDPAKFHY----- 250 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + +DD L N++ + V + + + Sbjct: 251 -EIFDITDLDD-------QILFYNSGEIKNDSHEQVETSQVYGRQWQSRLHVSPAFIAD- 301 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 L + ++ + + + +R++ ++ +++E+++DGI Sbjct: 302 --LHLPDPFVFLVIGLSISLLSTILVVVIRVSMVRQREVMAHQSRITALVESSADGIISK 359 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 N +G+I+S N+ +FGY E+++ + L + + + + Sbjct: 360 NLDGVIVSWNKGAESIFGYTKEEVVGQKVLDLLVPPPLQDEDKSIFSSVKDKKES-ISIE 418 Query: 529 TLGSTKEEKLLSLRIIIKKL-PFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSH 584 T +TK + + + + + DISE K+ + K+ E + Sbjct: 419 TRRTTKAGTDVPVSLTFSPIFNDDDGIIGVSQSVRDISERKKAEAKIRELNTNLENQVKE 478 Query: 585 KS 586 ++ Sbjct: 479 RT 480 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 33/408 (8%), Positives = 99/408 (24%), Gaps = 53/408 (12%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149 G + ++ G +++G ++ D+ + + + ++ + +T Sbjct: 362 DGVIVSWNKGAESIFGYTKEEVVGQKVLDLLVPPPLQDEDKSIFSSVKDKKESISIETRR 421 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------- 200 GT+ VP+ L PI++ + G V A + L Sbjct: 422 TTKAGTD--VPVSLTFSPIFNDDDGIIGVSQ--SVRDISERKKAEAKIRELNTNLENQVK 477 Query: 201 -------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247 + + E+ + + + V T Sbjct: 478 ERTAELLELNLLLNDVVNASSEVSIIATDTKGIITLFNHGAQKMLGYTAEEVVGQRTPVG 537 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQED-----------------FHTINLNQYTKKQYFG 290 H ++ ++ + + + + + + + N Sbjct: 538 FHIQSEIELQRADIFKATGTHVTDNLEVLIFKALHENFDSQEWTYVAKNGVARPVSLVIT 597 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYAN 345 ++++ E +L S + + + + + + + Sbjct: 598 PMKSSDDEVIGFLGIAMDISEQKTTQRELISTRDQLLLAAEVAELGIWTWDIEDDTLEWS 657 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405 S + + G D+ + L + + + I Sbjct: 658 DSMFEIYHLSKSQ--KQDGIKYADWYNRVHPDDRDMAENALKEAVEGINEYNL-VFRIVL 714 Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 ++ + N + GI + R + + + Sbjct: 715 PDDSVRFIFARASLHKNAEGKMTKVTGINRDITQERGLEDWLRKAKDE 762 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 28/268 (10%), Positives = 65/268 (24%), Gaps = 27/268 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + + K +G A +++G R V + + D+ K T Sbjct: 505 TDTKGIITLFNHGAQKMLGYTAEEVVGQR-TPVGFHIQSEIELQRADIFKATGTHVTDNL 563 Query: 149 LW----------------PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + + P+ L P+ S + E GF G + Sbjct: 564 EVLIFKALHENFDSQEWTYVAKNGVARPVSLVITPMKSSDDEVIGFLGIAM--DISEQKT 621 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEY 246 + + E+ + + D + + ++ + Y Sbjct: 622 TQRELISTRDQLLLAAEVAELGIWTWDIEDDTLEWSDSMFEIYHLSKSQKQDGIKYADWY 681 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLS 304 D + L + E F + + + +N + + Sbjct: 682 NRVHPDDRDMAENALKEAVEGINEYNLVFRIVLPDDSVRFIFARASLHKNAEGKMTKVTG 741 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP 332 + ++ + D Sbjct: 742 INRDITQERGLEDWLRKAKDEADAASAA 769 >gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 867 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 91/383 (23%), Positives = 163/383 (42%), Gaps = 17/383 (4%) Query: 437 DVDTRINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 D + + +++ + + + S + +R ++ N A K++GY + + Sbjct: 340 ISDRKRAEDAVKLSEERFKKLFDNVDSVAVQGYDRNRKVIYWNNASEKIYGYKQNEAIGV 399 Query: 496 PFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + + + K+ + + S Sbjct: 400 HLEDLIIPPDMRLHVVEAIRQYAEEGKPIPAG-ELHLMRKDGTSVPVYSSHVMQTTSKGD 458 Query: 555 SLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 D++E + +L AK AE S KS+FLA +SHEIRTPL I+G ++++ Sbjct: 459 IELFCLDVDLTELDVVRKELISAKDKAEASSMAKSEFLANMSHEIRTPLNGILGMLQLLE 518 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + EY +S + +++D+LD+SKIES + + ++E V Sbjct: 519 TTTI----SDEQKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVEFDIEEVVRSV 574 Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + E + RT NNIPR ++ D ++QI NI+ NAI FTP+G +I + + Sbjct: 575 SEAFSISIKENGLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTPTG-KIEVELS 633 Query: 731 HTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S+ V++ V DTG+G+ L+ ++PF Q+ S +G GLGL + + +V Sbjct: 634 LLSHHTNKSCRVLVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGLGLAIVRKLV 693 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 G I S GT ++F Sbjct: 694 ALLGGNICIDSELGAGTTFYVVF 716 Score = 43.1 bits (100), Expect = 0.19, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 37/133 (27%), Gaps = 9/133 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNH 511 +L +++ + ++ TN+A + E K + + M+ Sbjct: 29 FQIVLSCLPMPYLLVDVDERVIQTNQACLDMLKIDGSVESCYEKKLSEVFYND---PMHP 85 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567 + + + + + L + + L + D +E K+ Sbjct: 86 TVVGKSISENKIFRDIEVHTIDRHGSELQIVANVFPLYDLNSTCIGGMCIYVDTTERKRT 145 Query: 568 KNKLSHAKKIAEK 580 + L + Sbjct: 146 EEALERRLVALTR 158 >gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough] Length = 1513 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 119/651 (18%), Positives = 217/651 (33%), Gaps = 33/651 (5%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS 242 VN + L + ++ L + + E + + + V Sbjct: 727 TVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGR 786 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + A L + + +Q +++ + + Sbjct: 787 PLQQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDG--RWCQQRIHAVRDETGATEHM 844 Query: 303 LSHRNHPSL---SAYFDEGENLTPETVDKCPIPFF----VYSHG-NLFYANPSFLLLTKY 354 L + + + E P F + + Y + L Sbjct: 845 LLTFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGL 904 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + L L P + + + +D + + + Sbjct: 905 SQEEIKADPHALVALF-GPDVVPHILAG---ISATDGEGTPVDVEIPLHCTGGTKWVHVQ 960 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 E G+ + + R + +M + IL+ I + G Sbjct: 961 ATSTPARGGGTE---WYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGAC 1017 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N G +E + + + + + L+Q E Sbjct: 1018 DWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA--LQQAFEMNYRLKRH 1075 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + L K LP + +DI++ + A K AE+ + KS+FLA Sbjct: 1076 DGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLA 1135 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTPL +G + +P +Y RSG ++ +++D+LD+S+I Sbjct: 1136 NVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRI 1191 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709 E+GK+ + P + E V E S L A K I + T+ A P + D ++Q Sbjct: 1192 EAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLF 1251 Query: 710 NILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++ NA+ FT GG ++ ST + ++L VRDTG G+ +E +PF Q+ S Sbjct: 1252 NLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGS 1311 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 R G GLGL + +++ G + S P GT + P+ T P Sbjct: 1312 YTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIPVGKTRRPQ 1362 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 51/226 (22%), Gaps = 11/226 (4%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLK 138 W D G + G + G D I Sbjct: 1002 DHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA 1061 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 Q + L +G + + P+ + FSGF G+ + + Sbjct: 1062 LQQAFEMNYRLKRHDG--QFRWLVDCGKPLPDLDGTFSGFIGY--CYDITDAVNALESMC 1117 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 K+ + K + + P + + + + T Sbjct: 1118 EASKRAEEANRTKSEFLANVSHELRT------PLNGALGMLQLLELSSLSPEQRQYVTTA 1171 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L + D I + + ++ E F S Sbjct: 1172 IRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFS 1217 >gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. C56-T3] Length = 597 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ NR+G IL TN + + + Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEAMAP-L 307 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + ++ + Q+ E G T + L + + D++E + Sbjct: 308 PPQVKELFARVVREEKEQSTEVTLQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 363 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 364 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKE 407 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L +E V L + I A EK+I Sbjct: 408 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIE 467 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I D ++Q+ N++ NAI T SGG + + + + V + V+D+G Sbjct: 468 LTAEFRDRDIEIAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDG-VTIHVQDSG 526 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFS 586 Query: 806 IIFP 809 P Sbjct: 587 FYLP 590 >gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha proteobacterium BAL199] Length = 664 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 131/638 (20%), Positives = 242/638 (37%), Gaps = 68/638 (10%) Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 + K + P ++ + L + S+ Sbjct: 55 AGAEQLLGKPSDTLIGTSFLPAITAWPIPGAADRLLRVLDSGIPDAFDLALRIDGQPSVM 114 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + + + L E + +D P Sbjct: 115 SIKVTAFAGGLAIYARDVTDRRADEIRMR----------ELEQRARRAERRLIDALDASP 164 Query: 331 IPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----PVM 385 PF V+ L N ++ ++ + L +D + Sbjct: 165 DPFAVFDSSSRLVLCNQTWASMSGLGDARLLPGRRFEDLLRQVSIGADPANVGFDTIEAF 224 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + A I + + ++ + E Sbjct: 225 IQWRLVRHRNADGEPIQITQKDGRVFLI-------RERRMDDGGSVNVATEIT------- 270 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---- 501 ++E L ++AT +A+ +RE ++ N++ LF V + + Sbjct: 271 ELERSRRLLRDTVDATEQAVALFDREERLVIWNQSFE-LFSPAVTFRVGMTLEETVLTVT 329 Query: 502 --EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 +T + +T L L + + + ++ +R ++L +T Sbjct: 330 KTSASTMHIDGRPVTAAERLALPRGSFTELERRSADGRIFLIR---ERLTADGGVVITAT 386 Query: 560 DISEWKQEKN----------------------------KLSHAKKIAEKESSHKSDFLAR 591 D ++ K ++ L+ K+ AE S KS FLA Sbjct: 387 DATDLKVKEQTLEAQVQALHAARADAEQHAEHLARMTDMLTREKERAEAASRTKSQFLAN 446 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHE+RTPL A++GFSE++K + FGPLG RY EYA+ I SG+ +L ++ND+LD+SKIE Sbjct: 447 MSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYADDIHASGHHLLSLINDILDMSKIE 506 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK LH E +L + +++ A E ++++ + + D+R++KQ+ +N+ Sbjct: 507 AGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQVELPDPALVVNVDVRAIKQVLINL 566 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 L+NAI FTP+GG++ + + V + V D G+G+ EL + ++PF QI + + Sbjct: 567 LANAITFTPAGGRVRLGVRVHDDG-VAMYVADNGIGIPEEELPRLLRPFEQIDGADRRGR 625 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 EGTGLGL L+ A+V+ + G + S GT + + P Sbjct: 626 EGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRLP 663 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 93/393 (23%), Gaps = 34/393 (8%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 ++ + +G + +IG ++ + + +L Sbjct: 47 DLVWTVVNAGAEQLLGKPSDTLIGTSFLPAITAWPIPGAADRLLRVLDSGIPDA-FDLAL 105 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHE 209 I+G + I + A F+G G I + L+++ Sbjct: 106 RIDGQPSVMSIKVTA---------FAG--GLAIYARDVTDRRADEIRMRELEQRARRAER 154 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + +F S + + + + L + Sbjct: 155 RLIDALDASPDPFAVFDSSSRLVLCNQTWASMSGLGDARLLPGRRFEDLLRQVSIGADPA 214 Query: 266 ESSLPEQEDF--------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 E F + Q G + + + N + + Sbjct: 215 NVGFDTIEAFIQWRLVRHRNADGEPIQITQKDGRVFLIRERRMDDGGSVNVATEITELER 274 Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFL-------LLTKYKSVDDIEIAGGLSTL 369 L +TVD ++ L N SF + + S Sbjct: 275 SRRLLRDTVDATEQAVALFDREERLVIWNQSFELFSPAVTFRVGMTLEETVLTVTKTSAS 334 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 A + + L R T + + I RE A + + + Sbjct: 335 TMHIDGRPVTAAERLALPRGSFTELERRSADGRIFLIRERLTADGGVVITATDATDLKVK 394 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + +E + + E L + + + Sbjct: 395 EQTLEAQVQALHAARADAEQHAEHLARMTDMLT 427 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 14/131 (10%), Positives = 44/131 (33%), Gaps = 14/131 (10%) Query: 451 VMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 L ++L++ G+ + + + N +L G P + ++ F + Sbjct: 18 RELLQALLDSAFQGLMALRPVLGGDGKTVDLVWTVVNAGAEQLLGKPSDTLIGTSFLPAI 77 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 L +L + + + + + IK F+ ++ D+ Sbjct: 78 TAWPIPGAADRLLRVLDSGIPDAFDLALRI---DGQ--PSVMSIKVTAFAGGLAIYARDV 132 Query: 562 SEWKQEKNKLS 572 ++ + ++ ++ Sbjct: 133 TDRRADEIRMR 143 >gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis G4] Length = 766 Score = 333 bits (854), Expect = 8e-89, Method: Composition-based stats. Identities = 100/529 (18%), Positives = 201/529 (37%), Gaps = 31/529 (5%) Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354 + + + + +D P G + Y N + LT Sbjct: 103 AVAAMLRDTRLTNDRARRREAAARERLEAILDALPHGVIAADTQGRVTYLNAAAAELTGC 162 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAM 413 S ++ L + + P ++A + H +Q +++ + + Sbjct: 163 SSDAALQEPVRDVVRLFD----RDERLVPTTALDRALAGVSAQSDQHWLQRRGDSAPVPI 218 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 I + + + + R E +QL ++++A+ D I I+ +G Sbjct: 219 AEIARPLVDAHGNIDGAVLVLRDALAQR---AAAETSRLQL-AVVDASPDAIVGIDAQGR 274 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 I+S N A ++FGY + + + + LT L Sbjct: 275 IVSWNGAAQRIFGYDEAHAHGRALDTLVA--QRWLRRYPLTVSFETLREPIGPLEVLCVR 332 Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTM------------HDISEWKQEKNKLSHAKKIAEKE 581 ++ + + + + + + D+ ++ A++ A+ Sbjct: 333 RDGRRFRASVSACPVRGDARNCVALSLTLRETRVQRRRDL-RTQRSLQGARTARERADTS 391 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + K + LA VSHE+RTPL I G+ EV+++ + + + IDRS + + +V Sbjct: 392 NRLKDELLATVSHELRTPLNVIYGWVEVLRS----ASDDALQQQAIDAIDRSAHSLTRMV 447 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 D+LD S + +GK+ L PV + ++A S Q A+ I + + + D Sbjct: 448 GDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAAGIALEFDCTASACVVSGDA 507 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ N++SNA+ FTP+GG + ++ TH +L V DTG G+ + + F Sbjct: 508 ERLRQMLSNLVSNALKFTPAGGAVTVTLTH-DAAHAVLAVGDTGQGIASEFIPYVFDMFR 566 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 + S G GLGL + + + + + G+ + S +G + P Sbjct: 567 RADGSPASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGATFTVTLP 615 Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 34/378 (8%), Positives = 88/378 (23%), Gaps = 24/378 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWYG 145 D G + ++ + G + + + DV + D P + L + Sbjct: 144 DTQGRVTYLNAAAAELTGCSSDAALQEPVRDVVRLFDRDERLVPTTALDRALAGVSAQSD 203 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G + VPI A P+ + G ++ + Sbjct: 204 QH-WLQRRGDSAPVPIAEIARPLVDAHGNIDGA--VLVLRDALAQRAAAETSRLQLAVVD 260 Query: 206 HLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + S IF H R + + + + V Sbjct: 261 ASPDAIVGIDAQGRIVSWNGAAQRIFGYDEAHAHGRALDTLVAQRWLRRYPLTVSFETLR 320 Query: 260 PLLTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + E + + TL+ + L + Sbjct: 321 EPIGPLEVLCVRRDGRRFRASVSACPVRGDARNCVALSLTLRETRVQRRRDLRTQRSLQG 380 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTL 369 + E + + D+ + + ++ + + S D ++ + Sbjct: 381 ARTARERADTSNRLKDEL-LATVSHELRTPLNVIYGWVEVLRSASDDALQQQAIDAIDRS 439 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + L A + + + ++ A +F Sbjct: 440 AHSLTRMVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAAGIALEFDCTAS 499 Query: 430 QNGIEPEDVDTRINKRKM 447 + + R + Sbjct: 500 ACVVSGDAERLRQMLSNL 517 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 22/230 (9%), Positives = 56/230 (24%), Gaps = 5/230 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 IDA G + + + G G L + + + + G Sbjct: 269 IDAQGRIVSWNGAAQRIFGYDEAHAHGRALDTLVAQRWLRRYP-LTVSFETLREPIGPLE 327 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + ++A P+ R + RV +R + Sbjct: 328 VLCVRRDGRRFRASVSACPVRGDARNCVALS--LTLRETRVQRRRDLRTQRSLQGARTAR 385 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E + ++ E S + P + +V A + + + Sbjct: 386 ERADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSASDDALQQQAIDAIDRSAHSLTR 445 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + ++ + + + + + ++ FD Sbjct: 446 MVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAAGIALEFD 495 >gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix] Length = 697 Score = 333 bits (853), Expect = 8e-89, Method: Composition-based stats. Identities = 100/421 (23%), Positives = 193/421 (45%), Gaps = 18/421 (4%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI--------NKRKMEIEVMQLCSILE 459 N + P Q + + G + ++ ++ + +L ++LE Sbjct: 127 GNLCIIDTRPRRLDEQEVTALREFGEIATSLLREYLARRDLGHSRSALDAQGQRLAAVLE 186 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519 + GI I+ G I N A +LF YP E +L ++ + + YL Sbjct: 187 TAAAGIIQIDHTGHIEQFNSAAERLFDYPAEQVLGHNVSMLMPARWAHEHDDYLRHYRET 246 Query: 520 DLRQTLE--KITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + + + G ++ L + ++ Y + D+++ + + + Sbjct: 247 GQARVIGSGREVEGLRRDGSTFPMQLAVSEVRIEEQPHYIGIVTDLTDLHESQRR---EL 303 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 AE+ + KS+FL+ +SHE+RTPL +I+GFS++++ R PL R +I+RSG Sbjct: 304 AEAERANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPLP-ERQQRQVEHIERSGQ 362 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNI 694 +L ++ND+LD+S+IE+G+M + EP ++E +++ A E+ I + + Sbjct: 363 HLLALINDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGEARERGIQLDFPPPEPAL 422 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 P + AD +KQ+ LN++SNAI + G + + T + RVRDTG+G+ Sbjct: 423 PAVQADHTRLKQVLLNLVSNAIKYNRDKGIVRVRVTPMPEGRMEFRVRDTGLGIPEDRRA 482 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + +PF ++ + +G+G+GL +++ +V G+ S +GT P+ T+ Sbjct: 483 ELFRPFSRL-GHETGAIQGSGIGLVISRELVRHMGGELEYQSREGEGTDFFFTLPMSCTA 541 Query: 815 H 815 Sbjct: 542 E 542 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 28/270 (10%), Positives = 76/270 (28%), Gaps = 21/270 (7%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTW 143 ID G++++ + + A +++G + + H D H + + + Sbjct: 194 QIDHTGHIEQFNSAAERLFDYPAEQVLGHNVSMLMPARWAHEHDDYLRHYRETGQARVIG 253 Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G+ +G+ + + ++ + I + GIV ++ + + L + Sbjct: 254 SGREVEGLRRDGSTFPMQLAVSEVRIEEQPHYI------GIVTDLTDLHESQR--RELAE 305 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + SS+ E + L ++ L E + + ++ LL Sbjct: 306 AERANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPLPERQQRQVEHIERSGQHLL 365 Query: 263 T--------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 S + + + + + + P+L A Sbjct: 366 ALINDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGEARERGIQLDFPPPEPALPAV 425 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 + L ++ + Sbjct: 426 QADHTRLKQVLLNLVSNAIKYNRDKGIVRV 455 >gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium radiobacter K84] Length = 771 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 123/529 (23%), Positives = 224/529 (42%), Gaps = 50/529 (9%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + + + + F+ + S + + D L+ Sbjct: 254 ESNMRVETALSRGRCGLWDFDFASREFFWSRSMYDMLGLPAADRPLSFADAERLMH---- 309 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D+N++ + + L I+ + + + M + GI Sbjct: 310 PDDNSLHTLARSITRGNAGQVDQIL-RIRHAKGHYVWMRARAQVIRTNSGR-VHMIGIAM 367 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + ++ +L +E TS+ + ++ ++ N + +G P ++ Sbjct: 368 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLPNGVLVP- 426 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + R + T +E+ L + + Sbjct: 427 --GTERAVVNAAAARPIIERRIVDPGRSNHSQTTEVQLADERWLQINERRTR---DGGLV 481 Query: 556 LTMHDISEWKQEKNKLSH-----------------------------------AKKIAEK 580 DI++ K+ + +L K+ AE Sbjct: 482 SVGTDITQLKRNQERLRESERRLMATINDLSASRQILERQKAELSTANTNYLAEKERAEA 541 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ RY EYA I SG +L++ Sbjct: 542 ANKAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSSRYNEYAKDIHDSGKHLLNV 601 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +ND+LD+SKIE+G + L E + L + E + L + A K I + S ++ I ++ AD Sbjct: 602 INDILDMSKIEAGHIKLSCEKIDLAPLIEECLRLTSIPAACKNIHVEQSISSGI-KLTAD 660 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R++KQI LN+LSN++ FT +GG+I + T + V+L + DTG+G+ L K +PF Sbjct: 661 RRAMKQILLNLLSNSVKFTNNGGRIAVRTRKVDDA-VVLTIADTGIGIPKSALSKIGQPF 719 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + G+GLGL +++++ + G+ I S GT+I I P Sbjct: 720 EQVQSQYAKSKGGSGLGLAISRSLTLLHHGRMRIRSREGIGTVIAIRIP 768 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 29/287 (10%), Positives = 78/287 (27%), Gaps = 24/287 (8%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 V R + + + + L + G + + F +S L + L+ Sbjct: 241 QVKRTRDADEIFLESNMRVETALSRGRCGLWDFDFASREFFWSRSMYDMLGLPAADRPLS 300 Query: 245 EYYAH-----KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 A D+ L T + + + + + ++ NS Sbjct: 301 FADAERLMHPDDNSLHTLARSITRGNAGQVDQILRIRHAKGHYVWMRARAQVIRTNSGRV 360 Query: 300 ---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355 + L+ + E + + ++ F ++ + L N F Sbjct: 361 HMIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLP 420 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + + A +P++ R + ++ +Q E L + Sbjct: 421 NGVLVPG--------TERAVVNAAAARPIIERRIVDPGRSNHSQTTEVQLADERWLQINE 472 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + + N+ ++ +L + + S Sbjct: 473 RRTRDG-------GLVSVGTDITQLKRNQERLRESERRLMATINDLS 512 Score = 38.5 bits (88), Expect = 5.3, Method: Composition-based stats. Identities = 24/250 (9%), Positives = 48/250 (19%), Gaps = 10/250 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W+ D S + +G A L + P+++ L R T Sbjct: 270 LWDFDFASREFFWSRSMYDMLGLPAAD---RPLSFADAERLMHPDDNSLHTLARSITRGN 326 Query: 146 ----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 L YV + A I + + GI + D Sbjct: 327 AGQVDQILRIRHAKGHYVWMRARAQVIRTNSGRV---HMIGIAMDVTEQHRLAQRYAEAD 383 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 ++ + E + + + + + Sbjct: 384 QRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLPNGVLVPGTERAVVNAAAARPIIE 443 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + + L Q + E E Sbjct: 444 RRIVDPGRSNHSQTTEVQLADERWLQINERRTRDGGLVSVGTDITQLKRNQERLRESERR 503 Query: 322 TPETVDKCPI 331 T++ Sbjct: 504 LMATINDLSA 513 >gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 597 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ NR+G IL TN + + + Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEAMAP-L 307 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + ++ + Q+ E G T + L + + D++E + Sbjct: 308 PPQVKELFARVVREEKEQSTEVTLQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 363 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 364 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKE 407 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L +E V L + I A EK+I Sbjct: 408 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIE 467 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I D ++Q+ N++ NAI T SGG + + + + V + V+D+G Sbjct: 468 LTAEFRDRDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDG-VTIHVQDSG 526 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFS 586 Query: 806 IIFP 809 P Sbjct: 587 FYLP 590 >gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5] Length = 425 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 102/415 (24%), Positives = 181/415 (43%), Gaps = 35/415 (8%) Query: 428 MPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + I ++ + + +++ + S++E+ D + + + +GII N+ Sbjct: 1 IGYLLIGTDNTARKQEEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQ 60 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + L G ++++ P F P+ + + +LS E E ++S Sbjct: 61 MMALTGRTRDELIGAPCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVS 118 Query: 541 LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 D++E K+ + L E S KS+FLA +SHE+RT Sbjct: 119 YNAATFHDRDRKLKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRT 178 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL A+IGFSE +++ G + + Y I SG +L ++ND+LD+SK+E+G M L Sbjct: 179 PLNAVIGFSEALRDGMVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLE 237 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E V LDE +S ++ +V+ A + I ++ + D R KQI N+L+NA+ F Sbjct: 238 LESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKF 297 Query: 719 TPSGGQIIISTTHTS-----------------------NEEVILRVRDTGVGMTNYELEK 755 + GG + ++ + + L V DTG+G+ ++ K Sbjct: 298 SEPGGWVTLAVRLVPASQAGLIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNK 357 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K F QI + + EGTGLGL + K + + + G + S G + P+ Sbjct: 358 LFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 412 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++++++ G ++IG + + I +L + T Sbjct: 48 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 106 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +GT + A + R+R+ G F + + + H Sbjct: 107 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 162 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +K + + +++ V +T+ + LL+ Sbjct: 163 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 218 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + D + T + L S + + E E E Sbjct: 219 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 276 Score = 45.8 bits (107), Expect = 0.029, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 44/162 (27%), Gaps = 12/162 (7%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 N +++ E L +L +D G + N + LT Sbjct: 10 NTARKQEEEAQALLDQRLRDQQFYTRSLIESNIDAL---MMTDPQGIISDVNKQMMALTG 66 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + I P +D + + ++ + A + Sbjct: 67 RTRDELIGAP--CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAY-------DGTETVV 117 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 ++ ++ + + + + +R +E + ++L Sbjct: 118 SYNAATFHDRDRKLKGVFAAARDVTERKRFERTLEEKNIELE 159 >gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 877 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 118/575 (20%), Positives = 219/575 (38%), Gaps = 23/575 (4%) Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 H +D ++ L EE S F ++ + ++ S + Sbjct: 63 VIHPEDQHLFDELLRLAQEEGSGSVDLRFCGMDDSCKWVNLRAVGHRDESGVCKYVVGVA 122 Query: 307 NHPSLSAYFDEGENLTP----ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361 S + E L+ +D F V GN+ Y N SF + Y+ Sbjct: 123 RDISEVRRYQEELKLSEMRWKAVLDNAGEAFLTVDQSGNVTYVNKSFESMLGYRRDQIEG 182 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + L ++ + + S R + + + + I Sbjct: 183 RSLWT--------LVPDDQRQVLDYQWSMRHVKWQRRYEIDLLRSDGSRMPARVIATVVK 234 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + ++ G + R R+ + + L ++L+ + + G NRA Sbjct: 235 DLGEDHYLHFGFIDDLTQIRRIDREQKDRLRFLRTLLDTIPSPVFYKDSRGRYQGFNRAF 294 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++F + + + + +N L + + K G ++ Sbjct: 295 QEVFQ-AIGPMGEFDMSYLPDDFVARDVNSDLDLLRNPGAMCFHFKFGEGDVSRHFVVHK 353 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + M +I+E K+ + +L AK+ AE S K F++ +SHEIRTP+ Sbjct: 354 ATFFDHVGRVGGFVGVMTEITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMN 413 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 A++G SE++ + +P E I ++ + +I+ D+LD++ +E+GK+ L Sbjct: 414 AVVGLSEMLLDSC----EDPEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESS 469 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTP 720 S+++ + SL+ A K + R + + D ++Q+ N+LSNAI FTP Sbjct: 470 FSMEDLCAPVFSLMGAEAKRKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTP 529 Query: 721 SGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 SG +S ++ V+ V DTGVG+ +L++ F + R GTGLGL Sbjct: 530 SGS---VSARISASEGGVLFEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLA 586 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 L K +V G + S +G+ I PL Sbjct: 587 LCKKLVSLMGGAIRVRSRRGEGSCFSIWLPLRRDH 621 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 22/246 (8%), Positives = 64/246 (26%), Gaps = 16/246 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + +++ +G ++ G L + ++ + + + Sbjct: 156 VDQSGNVTYVNKSFESMLGYRRDQIEGRSLWTLVPDDQRQVLDYQWSMRHVKWQRRYEID 215 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-------HVNRVDNDPRALGKRLD 201 L +G+ + + + + + FG + ++R D + L Sbjct: 216 LLRSDGSRMPARVIATVVKDLGED----HYLHFGFIDDLTQIRRIDREQKDRLRFLRTLL 271 Query: 202 KKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + + + + ++F P M + D L Sbjct: 272 DTIPSPVFYKDSRGRYQGFNRAFQEVFQAIGPMGEFDMSYLPDDFVARDVNSDLDLLRNP 331 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + E + +++ T + G + E + + E Sbjct: 332 GAMC--FHFKFGEGDVSRHFVVHKATFFDHVGRVGGFVGVMTEITEQKRMEAELREAKER 389 Query: 319 ENLTPE 324 + Sbjct: 390 AEASSR 395 >gi|168703719|ref|ZP_02735996.1| sensory box histidine kinase/response regulator [Gemmata obscuriglobus UQM 2246] Length = 902 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 94/791 (11%), Positives = 234/791 (29%), Gaps = 84/791 (10%) Query: 72 NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-- 129 + F D G ++ + IG A +++G LC++ + P Sbjct: 7 DDFRAILDRLPTPVI-GFDRGGRHDFVNPAACRMIGRSADQLLGRTLCEIGLPPDLGPEL 65 Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189 + ++ + + + T P G + + L P + V Sbjct: 66 DANVARVRESGAPFA-HTVSLPSPGGTAVLLVHLVPRP----DGGV-----LVTATDVSV 115 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYA 248 + ++++ E K I S + + + Sbjct: 116 QARAEQALRYSEERYRQTIEAAFDAIVTTDPKGTIIGWNSGAERVFGYPASDALGRDVEL 175 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK---------QYFGTLQNNSKES 299 E + + + + + + + L K + + + + Sbjct: 176 IVPPRYAAEHHAAMAAFDPANSSRMRSRVVELPAMRKGGIEFPAEITLAYWGAGADRRFT 235 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSV 357 + + E ++ F + G + N + Y + Sbjct: 236 AIVRDITARRAAEQALRDSEERHRLLIESVTDYAIFMLDPDGRVATWNAGAQRIKGYTAD 295 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + S + A + ++ + + Sbjct: 296 EIVGR--HFSVFYPPESTACTEAELETAAR-----VGRFAEEGWRVRKDGARFWG-HVVI 347 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + D R ++ + + ++E ++ + +G Sbjct: 348 TALRDPTGRLTGFAKVTRDLTDRRAAEQALRDSEQRYRQVVEDQTETVCRFRPDGTFTFV 407 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N + FG ++++ +P+ + + L + + +E + + + Sbjct: 408 NDVYCRTFGKRADELIGRPWHPVVHPGDLDHVETELARMSPDNPVVRIENRIVNAGGRTR 467 Query: 538 LLSLRIIIKKLPFSSCYS---LTMHDISEWKQEK---------------NKLSHAKKIAE 579 + + + D+++ + + + + + Sbjct: 468 WME-FVNRGFYSPAGGLVEIQAVGRDVTDRRAAEDARRELEADLRAKEQQQRYERQLLQS 526 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 ++ ++H+ LTA++G++ + R P N E I+ + + Sbjct: 527 QKLESLGVLAGGIAHDFNNLLTAVLGYA-SLSRMRLPP--NDPIAEDMKRIESAAQRAAE 583 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 + +L + G+ V L+ E L+ ++K + ++ + +P++ A Sbjct: 584 LCQQMLAYA----GRGQFVVRAVDLNALTQEMTQLLGAVLSKKAV-LKYNLTIGLPQVQA 638 Query: 700 DLRSVKQIALNILSNAIHF-TPSGGQIIIST-----------------THTSNEEVILRV 741 D ++QI +N+++NA P G I ++T V L V Sbjct: 639 DPTQLRQIVMNLITNASDAIGPKSGVITLTTGLIDADARYLTEIQAGAELDPGRYVYLEV 698 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 DTG GM+ K PF + G GLGL + +V A+ G +++ KG Sbjct: 699 SDTGCGMSEEVRAKIFDPFFTT------KFTGRGLGLAAVQGIVRAHKGAIKVYTQSGKG 752 Query: 802 TLIEIIFPLYD 812 T +++ P D Sbjct: 753 TTFKVLLPALD 763 >gi|292493747|ref|YP_003529186.1| PAS sensor protein [Nitrosococcus halophilus Nc4] gi|291582342|gb|ADE16799.1| PAS sensor protein [Nitrosococcus halophilus Nc4] Length = 767 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 102/647 (15%), Positives = 216/647 (33%), Gaps = 45/647 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + R RL + ++ + + Sbjct: 6 EELREREAQYRLQAQIIDQIHDAVTSIDLKGAITYWNKGAERLSGYSAVEALGKHISFIY 65 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 +++ E+ + EE E E + + L + + + Sbjct: 66 PEEEHTFLEQQVIRPLEEKGHHEVEVRLRRKSGEDFYAHLALSLLMDQEGAVTGMIGYAM 125 Query: 308 HPS----LSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSV--DD 359 + E E + D P+ + G L Y N + L + + DD Sbjct: 126 DITMRKQAEEALRESEARYRKLADLLPVAVYTCKAPKGTLQYYNQQAVELWGREPLCNDD 185 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 E G L + ++ P+ + + I+ R I+ + + Sbjct: 186 EEQLCGPLKLYQRDVATLSHPQSPMAIALTQG--ISYRNREVIIERPDGSRVIALANIDP 243 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTN 478 N+ + + + + + + + + ++ + + GI ++N + + N Sbjct: 244 IKNREGKVIEIINVLQDITYLKRAEEALRDSEARYRALFDGSPSGILMLNPSDLTFVEFN 303 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 GY E+ + +P + + E T TK K+ Sbjct: 304 DQAHLQLGYSREEFAQLTLPDIEAATSPEQSLEHACYFVQALGIDKQEFETHYRTKRGKI 363 Query: 539 LSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + + + L DI+E K+ + K ++ K +FLA ++HE+ Sbjct: 364 HDVLVTGRPLQIQGHTYLCAVFQDITERKRAE-------KALQEADRRKDEFLALLAHEL 416 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 R PL I +++K Q L P + I+R N + +V+DLLD+++I G++ Sbjct: 417 RNPLVPIRNAVQLLKLQSEPSL--PHLQQACGLIERQLNHLTRLVDDLLDVARITRGRIT 474 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L V + V +A+ ++ +EK + ++ AD + Q+ N+L NA Sbjct: 475 LQKSRVDMARCVVQAVEAIRSLLDEKGHDLTLKLPPFPLQVEADPVRLAQVIENLLHNAA 534 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG-----------QIPN 765 +T GG++ ++ T ++ +L V D G+G+ L F Q Sbjct: 535 KYTHEGGRVTLTLT-QEGQQAVLTVTDNGIGIPPELLPHIFDCFAYSERPLNHPSPQGGL 593 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811 + A+++++ + G+ S +G+ + PL Sbjct: 594 GLGLSL---------ARSLLEMHGGQIGATSPGLDQGSTFTVQLPLA 631 Score = 87.4 bits (215), Expect = 1e-14, Method: Composition-based stats. Identities = 33/394 (8%), Positives = 97/394 (24%), Gaps = 33/394 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147 ID G + ++ + G A + +G + + + L+ + + Sbjct: 32 IDLKGAITYWNKGAERLSGYSAVEALGKHISFIYPEEEHTFLEQQVIRPLEEKGHHEVEV 91 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L G + Y + L+ L + +G G+ + + + + ++ L Sbjct: 92 RLRRKSGEDFYAHLALSLL--MDQEGAVTGMIGYAM--DITMRKQAEEALRESEARYRKL 147 Query: 208 HEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 ++ K P + +D + Sbjct: 148 ADLLPVAVYTCKAPKGTLQYYNQQAVELWGREPLCNDDEEQLCGPLKLYQRDVATLSHPQ 207 Query: 260 P----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SL 311 LT S + + ++ ++N + E ++ Sbjct: 208 SPMAIALTQGISYRNREVIIERPDGSRVIALANIDPIKNREGKVIEIINVLQDITYLKRA 267 Query: 312 SAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + E D P + S N L Y + + L Sbjct: 268 EEALRDSEARYRALFDGSPSGILMLNPSDLTFVEFNDQAHLQLGYSREE-------FAQL 320 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + + + + + + + + + Q + Sbjct: 321 TLPDIEAATSPEQSLEHACYFVQALGIDKQEFETHYRTKRGKIHDVLVTGRPLQIQGHTY 380 Query: 430 QNGIEPEDVDTRINKRKMEI---EVMQLCSILEA 460 + + + + ++ ++ + ++L Sbjct: 381 LCAVFQDITERKRAEKALQEADRRKDEFLALLAH 414 >gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 835 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 189/381 (49%), Gaps = 26/381 (6%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + E + + ++ + + ++ +GI +++ EG I N A +F P++ + Sbjct: 214 LRREIKRRKNTEFQLIKQENKFKDLVYNIDNGIILVDTEGKIKFANPAALAIFEQPLQSL 273 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L F + + N + +E + + + + + + + S Sbjct: 274 LEYDFGIPIVSN------------------KPVELEIIKAKNKTGFVEMNVTFTEWEKES 315 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 Y +++ +I+E K+ + L AK+ A+ + K++FLA VSHE+RTP+ AI+GF+E + Sbjct: 316 VYLVSIREITERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAE-LLK 374 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + P Y EY I S N +L ++NDLLDI+++E+GK+ L++ S+ ++E I Sbjct: 375 LKLKAQEPPIY-EYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEII 433 Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 ++ A+++++ + +N+P I D ++QI +N++ N++ FT G I +S + Sbjct: 434 NIFSNQASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSKG-YIKVSLSM 492 Query: 732 TSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + + V+DTG+G+ + + ++ + F Q R G GLGL + + + + Sbjct: 493 QNLYGNYGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEF 552 Query: 788 NMGKFYIFSTPAKGTLIEIIF 808 G + S +G+ ++F Sbjct: 553 LGGTITLDSEWGEGSTFTLMF 573 >gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica RCB] Length = 1064 Score = 333 bits (853), Expect = 9e-89, Method: Composition-based stats. Identities = 109/566 (19%), Positives = 194/566 (34%), Gaps = 45/566 (7%) Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 +P + + + S H + + +D Sbjct: 269 IPTASSLDLVEQEFRRRLIVLLLISLASVGLARLFLHEMLDRKFGATIKELTRLKKALDN 328 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 P ++ + YAN L L + ++ G +S + +L Sbjct: 329 VPAYIYLKDAAHHYRYANAKTLSLFG-TDAESLKGKGD-EHFFPPETVSRLRQVDAQVLA 386 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + I + + + ++ GI + R+ + Sbjct: 387 GKNTDEI-----ITITDEHGQRAIYHEIKAPLWELDEKTPWGLCGISIDITQYRLAEEA- 440 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 V +L +E + + I + EG I N A + GY E+++ + + NTP Sbjct: 441 ---VARLSRAVEQSPESIVFTDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPR 497 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563 + L + K+ I + Y DI+E Sbjct: 498 ERYDEMWATLKAGK--VWRGELINKRKDGSEYLELATISPIRQPDGKISNYIAIKADITE 555 Query: 564 WKQEKNKLSHAKKIAEKE------------------SSHKSDFLARVSHEIRTPLTAIIG 605 ++ + +L + E+ S KS FLA +SHEIRTP+ AI+G Sbjct: 556 QRKNQEELEKYRTGLERLVQQRTQELAVAKEAAEVASRAKSTFLANMSHEIRTPMNAIMG 615 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 +++ N + I + +L I+ND+LD+SKIE+GKM L S Sbjct: 616 LGYLLEQSPL----NTEQQDKVRKIHGAAKHLLSILNDVLDLSKIEAGKMTLDRCAYSPA 671 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E ++ S++ A K + + T + P + D ++Q LN NA+ FT G I Sbjct: 672 EELTAVASMIGEDAQRKGLTVITETDDLPPFTIGDPTRLRQAILNFAGNAVKFTEHGS-I 730 Query: 726 IIS---TTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 + + + V DTG G+ + F Q +S R GTGLGL ++ Sbjct: 731 RLRGEIAETQPDNYLLRFSVSDTGPGIAPELQARLFTAFEQADSSSTRRLGGTGLGLAIS 790 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807 + + G + ST +G+ + Sbjct: 791 RHLSHLMGGDAGVDSTLGQGSTFWLT 816 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 5/153 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147 D G ++ ++ G ++IG + + + + LK W G+ Sbjct: 458 TDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPRERYDEMWATLKAGKVWRGEL 517 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ ++ PI + + S + I + ++ L Sbjct: 518 INKRKDGSEYLELATIS--PIRQPDGKISNY--IAIKADITEQRKNQEELEKYRTGLERL 573 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + + +V KE ++ S+ M +++ Sbjct: 574 VQQRTQELAVAKEAAEVASRAKSTFLANMSHEI 606 Score = 40.0 bits (92), Expect = 1.6, Method: Composition-based stats. Identities = 20/249 (8%), Positives = 65/249 (26%), Gaps = 11/249 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTW 143 + + DA + + + + G A + G + + +L +NT Sbjct: 332 YIYLKDAAHHYRYANAKTLSLFGTDAESLKGKGDEHFFPPETVSRLRQVDAQVLAGKNTD 391 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 T + P++ + G G I RL + Sbjct: 392 EIITI---TDEHGQRAIYHEIKAPLWELDEKTPWGLCGISI--DITQYRLAEEAVARLSR 446 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 E + + + + ++ +V + + + Sbjct: 447 AVEQSPE--SIVFTDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPRERYDEMW 504 Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ + + + ++Y + ++ + Y++ + + E Sbjct: 505 ATLKAGKVWRGELINKRKDGSEYLELATISPIRQPDGKISNYIAIKADITEQRKNQEELE 564 Query: 321 LTPETVDKC 329 +++ Sbjct: 565 KYRTGLERL 573 >gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 680 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 165/385 (42%), Gaps = 18/385 (4%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ + S+ + GI + G TN + G + L K + + Sbjct: 146 AELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHSE 205 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 + + + E + + +R Y T+ DI+ Sbjct: 206 DQERAIASWSTYIYQGGDYSDEFRFQTVDGSLRWVQVRSSPMLSGNGELLGYVGTLEDIT 265 Query: 563 EWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 KQ + + A++ AE + K +FLA +SHE+RTPLT+++G+S++++ ++ Sbjct: 266 ARKQSEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLD 325 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 R I+R+ N + ++ D+LD+S+I G++ L+ PV+L V A+ V+ Sbjct: 326 EKATARA---LEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVR 382 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730 A+ K + I T + + D ++QI N+L+NAI FTP GQ+ I Sbjct: 383 PLADTKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGEL 442 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++V DTGVG+ + L K + F Q ++ G GLGL + + +V+ + G Sbjct: 443 SDDLTHAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNG 502 Query: 791 KFYIFS-TPAKGTLIEIIFPLYDTS 814 S KG + FPL + Sbjct: 503 TILAESPGVGKGATFTVRFPLIQEN 527 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 30/345 (8%), Positives = 91/345 (26%), Gaps = 22/345 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144 + D G K + G A + + R + + + + + Sbjct: 166 IFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHSEDQERAIASWSTYIYQGGDYS 225 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + ++G+ + + + P+ S N E G+ G + + ++ ++ Sbjct: 226 DEFRFQTVDGSLR--WVQVRSSPMLSGNGELLGY--VGTLEDITARKQSEEIRAQVIREQ 281 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + E + + ++ + + P + + K E + Sbjct: 282 TARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKATARALEAIERNAN 341 Query: 265 EESSLPEQ--EDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + L E + I T+ + E+ L+ + +++ D + Sbjct: 342 SQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVRPLADTKNMTINTVLDYTLS 401 Query: 321 LTPETVDKCPIPFFVYSHGNLFYA-------------NPSFLLLTKYKSVDDIEIAGGLS 367 + + + + N + + I+ G++ Sbjct: 402 PVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGELSDDLTHAQIQVIDTGVGIA 461 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 + + + + H ++ + LA Sbjct: 462 SEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNGTILA 506 >gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102] Length = 1372 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 102/599 (17%), Positives = 206/599 (34%), Gaps = 54/599 (9%) Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAY 314 LL +E + + + ++++ + ++ Sbjct: 445 LLRTERPFASMRVGIVDRDGKRLIHDVLGEAIRDDVTGEFLAAVVTGRDVTVITEQITQI 504 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + + D P + S L + N + T + + + + P Sbjct: 505 KERDDERFKLICDTMPQLVWTASPDGLHDFFNTRWYSYTGLRPEECLGME------WQMP 558 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 D+ RS T E + + + G Sbjct: 559 FHPDDRNEALTRWKRSLETGEPFVMEYRCRSKEGEWRWFLGRALAVRNKDSGDIEKWFGT 618 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------LSTNRAVSKLFGY 487 + ++ K + QL S++ + I ++ + L N + Sbjct: 619 CTDVHESIETKFDAKRTRQQLLSVIAHSQVTIFTVDPNRRVNMLEGALIWNHTYEDVHD- 677 Query: 488 PVEDILRKPFTVFL-------EQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLL 539 P + + + + +IL + + E + L Sbjct: 678 PSRWYIGENMHTVFNRLVDQPPEGEQLDFLQPIEDILQGRTTEDVKEHGLDDRWYRTRFL 737 Query: 540 SLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHAKKI----------AEKESS 583 + + + D++E + + L + A++ + Sbjct: 738 PMYGKKTHDGKTTSDSTIEGVIGVIMDVTELRDREEALLKQSREKRKAVANEAAAKEANR 797 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS FLA +SHEIRTP+T ++G +E++ + + +Y + I S +L ++ND Sbjct: 798 LKSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYLDNIQSSATSLLTVIND 853 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILAD 700 +LD SK+ESG++++ SL V E + +++ K + ++ ++I ++ D Sbjct: 854 ILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIGD 913 Query: 701 LRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 V+QI N+L+N+I FT G + + + + + V DTG+G+ ++ Sbjct: 914 PGRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKRLF 973 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +PF Q S R GTGLGL + K ++D G+ + ST GT P P Sbjct: 974 QPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNKPHGP 1032 Score = 57.3 bits (137), Expect = 1e-05, Method: Composition-based stats. Identities = 21/213 (9%), Positives = 52/213 (24%), Gaps = 6/213 (2%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W G + G + +GM + L+ + Sbjct: 522 LVWTASPDGLHDFFNTRWYSYTGLRPEECLGMEWQMPFHPDDRNEALTRWKRSLETGEPF 581 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + EG + AL + +++ + + FG + + KR + Sbjct: 582 VMEYRCRSKEGE--WRWFLGRALAVRNKDSGDIE--KWFGTCTDVHESIETKFDAKRTRQ 637 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + + + V + +Y ++ + Sbjct: 638 QLLSVIAHSQVTIFTVDPNRRVNMLEGALIWNHTYEDVHDPSRWYIGENMHTVFNRLVDQ 697 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 E L + I + T+ L + Sbjct: 698 PPEGEQLDFLQPIEDILQGRTTEDVKEHGLDDR 730 >gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response regulator [Geobacter bemidjiensis Bem] gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response regulator, SSF and PAS domain-containing protein [Geobacter bemidjiensis Bem] Length = 1323 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 102/454 (22%), Positives = 188/454 (41%), Gaps = 51/454 (11%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 I ++RE ++ E + E + E + RI ++ + +L I++ Sbjct: 651 RRIDYHREREQLLSLQAQELEEKVRER------DQEIMQRRIAEQALRDSERRLADIIDF 704 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEIL 517 D ++N +G ++ NRA + G E +L K + ++ + Sbjct: 705 LPDPTFVVNAQGAVVIWNRAAEEFTGAKAEAMLGKAGNECAIPFYGMRRPLLLDMVLAPW 764 Query: 518 SLDLRQTLEKITLGSTK------------EEKLLSLRIIIKKLPFSSCYSLTM---HDIS 562 + + L + ++ + + DI+ Sbjct: 765 RAEEIKPLYVRLVVEGGKIIGEGPVKSASRPHAYTMAMAAPLYDSEGEVIAVIESVRDIT 824 Query: 563 EWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAII 604 E K+ +++L + + AE + KS FL+ +SHE+RTPL AI+ Sbjct: 825 ELKEGEDELKRHRAHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAIL 884 Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 G+++++K Q + + G +L ++ND+LD+ KIE+ KM L L Sbjct: 885 GYAQILKRQDN---LTDAQRQQLEIVRGCGEHLLSLINDVLDMGKIEAQKMELAELSFDL 941 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723 + + S+ ++ A+EK + + N +PR + D R +KQI LN+LSNA+ +T G Sbjct: 942 SALLGQVFSIAKVKADEKDLGFKYEELNRLPRAVRGDQRKLKQILLNLLSNAVKYTHRG- 1000 Query: 724 QIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLA 781 + + + S+ V + DTG G+ +L +PF Q Q EGTGLGL + Sbjct: 1001 CVTVRVRYHSSTGVFACEITDTGTGIPRDKLGIIFEPFVQLADGGQIR--EGTGLGLSIT 1058 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + +V G+ + S P G+ + PL + Sbjct: 1059 RRLVSLMHGQVTVESEPGAGSTFRVELPLPTVTE 1092 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 75/275 (27%), Gaps = 35/275 (12%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 T+ ++A G + + + G A M+G + + + + D++ W Sbjct: 709 TFVVNAQGAVVIWNRAAEEFTGAKAEAMLGKAGNECAIPFYGMRRPLLLDMVLA--PWRA 766 Query: 146 KT-----TLWPIEG------------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188 + +EG + + A P+Y E V Sbjct: 767 EEIKPLYVRLVVEGGKIIGEGPVKSASRPHAYTMAMAAPLYDSEGEVIAV--IESVRDIT 824 Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 + KR L + V KE+ ++ +Q M +++ + Sbjct: 825 ELKEGEDELKRHRAHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAIL 884 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK----------KQYFGTLQNNSKE 298 +LK + ++ + E + + + L S + Sbjct: 885 GYAQILKRQDN----LTDAQRQQLEIVRGCGEHLLSLINDVLDMGKIEAQKMELAELSFD 940 Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 L + ++ E +++ P Sbjct: 941 LSALLGQVFSIAKVKADEKDLGFKYEELNRLPRAV 975 >gi|107022927|ref|YP_621254.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116686830|ref|YP_840077.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] gi|105893116|gb|ABF76281.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU 1054] gi|116652545|gb|ABK13184.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia HI2424] Length = 768 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 105/560 (18%), Positives = 195/560 (34%), Gaps = 33/560 (5%) Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEGENLTP 323 + +T L + L + L H + Sbjct: 71 TLFLSDPAAYTTPLPDRLVQLGTFILIGALVCAVASLLHHTRLTNDRARRREAAARRQFE 130 Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + P +G L Y N + L + + + L Sbjct: 131 AVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAV-GRPVRDVLRIVDHEGRRVPTT 189 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 P+ + L +R +A+ P A+ + + R+ Sbjct: 190 PLDRALGGAEATSDRHWLQAGSGDRVPIVAVA-SPIGDADGNLDGAVLLLRDAGADRARV 248 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + +++ +++EA+ D I I+ +G I S N A ++FGY D + F + Sbjct: 249 DASRLQ------HAVVEASPDAIVGIDADGRIASWNAAAQRIFGYDEADARGRRFDTLIA 302 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558 + + L + L ++ + + + + +T+ Sbjct: 303 --RRWLRLNPLADAFDAMHEPVGPLELLCVRRDGRRFRATVSACPVQGEARACVTLSLTL 360 Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 D+ + + + A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 HETGAQRRRDLRAQRSLQGARDA-RDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 419 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N L + + IDRS + +V D+LD S + +GK+ L PV + S+ Sbjct: 420 RNTGDHAL----QHQAIDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSD 475 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + Q A+ IL+ A + + D ++Q+ N++SNA+ FTP GG + + Sbjct: 476 QVGTFQTAASSAGILLEFDCAASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLA 535 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +L V DTG G+ F + +S G GLGL + + + + G Sbjct: 536 -RDGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 594 Query: 791 KFYIFST-PAKGTLIEIIFP 809 + S +GT + P Sbjct: 595 NVTVASAGRDRGTTFTVTLP 614 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 31/254 (12%), Positives = 63/254 (24%), Gaps = 13/254 (5%) Query: 76 FDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134 F+ + R + D +G L ++ + +G + +G + DV I+ + Sbjct: 129 FEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVPT 188 Query: 135 DLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 L R W G+ VPI A PI + G ++ D Sbjct: 189 TPLDRALGGAEATSDRHWLQAGSGDRVPIVAVASPIGDADGNLDGA--VLLLRDAGADRA 246 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYA 248 + + E I S + + + A Sbjct: 247 RVDASR----LQHAVVEASPDAIVGIDADGRIASWNAAAQRIFGYDEADARGRRFDTLIA 302 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 + L E P + + ++ +Q ++ + Sbjct: 303 RRWLRLNPLADAFDAMHEPVGPLELLCVRRDGRRFRATVSACPVQGEARACVTLSLTLHE 362 Query: 309 PSLSAYFDEGENLT 322 D + Sbjct: 363 TGAQRRRDLRAQRS 376 >gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris RCH1] Length = 1535 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 119/651 (18%), Positives = 217/651 (33%), Gaps = 33/651 (5%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS 242 VN + L + ++ L + + E + + + V Sbjct: 749 TVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGR 808 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + A L + + +Q +++ + + Sbjct: 809 PLQQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDG--RWCQQRIHAVRDETGATEHM 866 Query: 303 LSHRNHPSL---SAYFDEGENLTPETVDKCPIPFF----VYSHG-NLFYANPSFLLLTKY 354 L + + + E P F + + Y + L Sbjct: 867 LLTFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGL 926 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 + L L P + + + +D + + + Sbjct: 927 SQEEIKADPHALVALF-GPDVVPHILAG---ISATDGEGTPVDVEIPLHCTGGTKWVHVQ 982 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 E G+ + + R + +M + IL+ I + G Sbjct: 983 ATSTPARGGGTE---WYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGAC 1039 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N G +E + + + + + L+Q E Sbjct: 1040 DWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA--LQQAFEMNYRLKRH 1097 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + L K LP + +DI++ + A K AE+ + KS+FLA Sbjct: 1098 DGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLA 1157 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTPL +G + +P +Y RSG ++ +++D+LD+S+I Sbjct: 1158 NVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRI 1213 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709 E+GK+ + P + E V E S L A K I + T+ A P + D ++Q Sbjct: 1214 EAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLF 1273 Query: 710 NILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766 N++ NA+ FT GG ++ ST + ++L VRDTG G+ +E +PF Q+ S Sbjct: 1274 NLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGS 1333 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 R G GLGL + +++ G + S P GT + P+ T P Sbjct: 1334 YTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIPVGKTRRPQ 1384 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 51/226 (22%), Gaps = 11/226 (4%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLK 138 W D G + G + G D I Sbjct: 1024 DHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA 1083 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 Q + L +G + + P+ + FSGF G+ + + Sbjct: 1084 LQQAFEMNYRLKRHDG--QFRWLVDCGKPLPDLDGTFSGFIGY--CYDITDAVNALESMC 1139 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 K+ + K + + P + + + + T Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRT------PLNGALGMLQLLELSSLSPEQRQYVTTA 1193 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L + D I + + ++ E F S Sbjct: 1194 IRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFS 1239 >gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium zucineum HLK1] Length = 554 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 167/366 (45%), Gaps = 12/366 (3%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L IL +S+GI +++ IL + FG+ ++++ + + + Sbjct: 43 EDVLNGILNISSEGIVVLDARLRILVFSPGAEAAFGWSADEMVGQSIERLIPPALRASHR 102 Query: 511 HYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565 ++ + + + G + ++ L + + KL S Y+ + D+S+ + Sbjct: 103 KHVEAFAAGEAQSRRMSDRSDIFGLRRNGEVFPLEVGLSKLMTSKGQIYTALLRDVSDRR 162 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + L+ A A+ + KS FLA +SHEIRTPL ++G ++ + + P E Sbjct: 163 EAEQALALAAAEAQAANQAKSAFLAAMSHEIRTPLNGVLGMAQAMAMEDLPP----HQRE 218 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I +SG +L I+NDLLD+SKIE+GK+ L + E A + A + + Sbjct: 219 RLEVIRQSGESLLAILNDLLDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLA 278 Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + A + D V+QI N++SNA+ FT +G + ++ + + L V+DT Sbjct: 279 FEVAVAPAARGVYRGDPLRVRQILHNLISNALKFTEAGS-VRVTVGRS-GGALSLVVQDT 336 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + + F Q S R GTGLGL + + + G + S P +G Sbjct: 337 GIGIPPEKAARLFQKFEQADASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATF 396 Query: 805 EIIFPL 810 ++ PL Sbjct: 397 TVLLPL 402 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 41/459 (8%), Positives = 101/459 (22%), Gaps = 35/459 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------RQNT 142 +DA + S G A +M+G + + + + R+ + Sbjct: 60 LDARLRILVFSPGAEAAFGWSADEMVGQSIERLIPPALRASHRKHVEAFAAGEAQSRRMS 119 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G + + L+ L G ++ + Sbjct: 120 DRSDIFGLRRNGEVFPLEVGLSKLMTS------KGQIYTALLRDVSDRREAEQALALAAA 173 Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 + ++ K + + + + E + L Sbjct: 174 EAQAANQAKSAFLAAMSHEIRTPLNGVLGMAQAMAMEDLPPHQRERLEVIRQSGESLLAI 233 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 LL + + E Q + T ++ P+ + Sbjct: 234 LNDLLDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRG 293 Query: 318 GENLTPETVDKC-PIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + G + L + + L + Sbjct: 294 DPLRVRQILHNLISNALKFTEAGSVRVTVGRSGGALSLVVQDTGIGIPPEKAARLFQKFE 353 Query: 375 LSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 +D + + + L + E + +P ++ + P Sbjct: 354 QADASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLPLKRIARAPAPPT 413 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 P +T + E + L ++LE A + +G A + Sbjct: 414 AAPPPPTPRETALKVLVAEDNAVNQVVLKTLLEQLGVA-ATVAPDGR------AAVAAWE 466 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 D++ + + E R + Sbjct: 467 REPWDVILMDVQMPEMDGPTATGVIRRREAAEGRPRTPI 505 >gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2] Length = 922 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 106/534 (19%), Positives = 205/534 (38%), Gaps = 27/534 (5%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYAN-PSFLLLT 352 + E + + N P + P Y L+ + P + Sbjct: 252 PASEATPLGAPIAQEVFLAASRNDGPGIMHSMGSDGPRRIVAYESIRLWSGSEPYMYMFM 311 Query: 353 KYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 ++ + + A + L +S A+ + E+ Sbjct: 312 GFQEAELLRQANIQAVLGGVTIAVSLALALLLAWYAGGRPLARSLEKLTKAACNVGESGR 371 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-----KMEIEVMQLCSILEATSDGIA 466 + + ++ R +R ++ Q +LE+ GI Sbjct: 372 MTPSNLDYSDGEMGQLGKAFDTMGHLLEEREAERNVALVRLSESEEQYRILLESNPAGIC 431 Query: 467 IINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 +++ E I N A +L G ED+ + ++ + + Sbjct: 432 LVDPETMAIEFANPAFLRLLGLGPEDVGAIRVSDIHPPEDLEAISESFMRHSRQGVSFSA 491 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585 L E L+ + ++ + DI+E K+ ++ L AK+ AE+ + K Sbjct: 492 AIPCLTRGGERILVDISSARVRIYGRVLLAGFFTDITERKRYEDALVVAKEAAEQANRAK 551 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 +FLA +SHE+RTPL ++G ++I+ + + + +S +L ++ND+L Sbjct: 552 DEFLANISHEVRTPLNGVMGMLQLIR----VSATSGEQLANVDIAIQSSRNLLRVLNDVL 607 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704 D SKIE+GK++L+ EP L + + +SL + A+EK +++ + + D + Sbjct: 608 DFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQADEKGLVLDSRIDPSARECYLGDEGRI 667 Query: 705 KQIALNILSNAIHFTPSGGQIIIS---TTHTSNE--EVILRVRDTGVGMTNYELEKAMKP 759 +Q+ N+L NAI FT G I + H + V DTGVG+ + +++ Sbjct: 668 RQVLFNLLGNAIKFTMYGS-ITLEAYALAHPEPGCERLFFSVTDTGVGIPDSKVDYIFDS 726 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL----IEIIFP 809 F Q+ +S + +G GLGLP+ K ++ G + S GT +++ P Sbjct: 727 FTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTLVVDSEMGAGTTILFNVQVRIP 780 >gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 643 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 113/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V A D E + + + ++ + Sbjct: 3 VLRKDGALASLFDSRLAGLVHASALAEPGVRFRHER-----FLISRLATGAVMMAGLPPY 57 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + A L + ++ + + L Sbjct: 58 LVWRGVPSGIEALAIASLFLPLVAAVILSRTGSLWIAHALSSLGLTGIVVCLAALTGGAS 117 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 A L + +S + + A + L +LA Sbjct: 118 SAAAIWLVAVPLEAMISGSRRATIAASVIA--VLGAFAVALSGYLPVGSLALAWPNAVVM 175 Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 E + + +M+ + +L A D + + G +L + Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKE 535 + ++ G + + + ++++ + + T+ Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGMPATVPFRLHLDAPRADG 295 Query: 536 EKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + ++ S D+SE ++ +L A+ AE+ K+ FL Sbjct: 296 SRTIYAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE+RTPL AIIGFS+V+ + L R EYA I +SG +LD+VN LLDIS+ Sbjct: 356 ATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I G + EPV ++ + L++L A+ I + ++ ++AD R+ +Q+ + Sbjct: 416 IRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAPVPAGCALVADARACRQMLI 475 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FTP GG++ + + + V D G+G+T +L + PF Q Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDVVVSDNGIGITEADLPRLGDPFFQAGGGYGR 534 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + + + + G + S P KGT + + PL Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575 Score = 41.6 bits (96), Expect = 0.58, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 63/273 (23%), Gaps = 16/273 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+G + E S + +G A ++ G L D I + Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGMPATVPFR 285 Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204 ++ + A +G G + R + Sbjct: 286 LHLDAPRADGSRTIYAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E+K + + + SL+ + + + + L Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGIIAQSGRHLL 404 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--------SKESFEYLSHRNHPSLSAYF 315 ++L + + + + L + + S L P+ A Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAPVPAGCALV 464 Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 + ++ F G + Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497 >gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia mallei GB8 horse 4] Length = 757 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + + V HG L Y NPS L + Sbjct: 97 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 155 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 156 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 213 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 214 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 269 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 270 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 327 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 328 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 387 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 388 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 443 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 444 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 503 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 504 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPR 562 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 563 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 601 Score = 65.0 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 130 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 189 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 190 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 247 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 248 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 307 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 308 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 352 >gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 577 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 110/585 (18%), Positives = 214/585 (36%), Gaps = 63/585 (10%) Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 +S +P L +E E +D+ F+ Sbjct: 5 AKAPAGPGPDRDDRRARLLGFGEHSVSKSYYPELKRRLEELER-FRSLLDQTGEAIFLVD 63 Query: 338 H--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G + A + + + + L L L+ D Sbjct: 64 GRTGRITDAAGAAGTMLRQDRQALVGR-------LFEELLPQEAVDHLRGLFSGDFAAGR 116 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 L S ++ E + + + + N++ ++ + Sbjct: 117 IETVLGRPGVRGGVSPSVEVTFRL--ASGEEGPIAIIVARDVTERKKNEQALKRAEEKYR 174 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 I+E ++GI + +G ++S N A++ L GY L + ++Q + Sbjct: 175 GIVENAAEGIFQSSLDGRLISANPAMASLLGYASTRELMRRIKNVVDQIVTHPEDRQRIR 234 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 Q +TK + I +++ ++ + ++ D++ K+ + L Sbjct: 235 SELTRYDQVKNLEVQMTTKTGNTIWGLINARRIRDAAGEPERFDGSLQDVTVRKKAEQTL 294 Query: 572 SHAKKIAEKESSHK--------------------------------SDFLARVSHEIRTP 599 E + + SDFL+ VSHEIRTP Sbjct: 295 LRYHDELETRVAERTAELTRINERLTHEVTIRKRAEEAAEAANRAKSDFLSMVSHEIRTP 354 Query: 600 LTAIIGFSEVIKNQ------------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 LT+++GF+ +I+ + + +E I G + ++ND+LD+ Sbjct: 355 LTSVLGFAVIIEKRLEQLFLPLLDRDPRRRRQAEQVMENLGIIVSEGERLKHLINDVLDL 414 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +K+E+GKM E V E V + + V L ++ K++ + T +P +L D + Q Sbjct: 415 AKLEAGKMAFKQERVDPAEVVRHVMSASVGLLSSHKKVSLDTRIEGRLPEVLGDRDRLIQ 474 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + +N++SNA+ FT G + T +++ V DTG+G+ E K + F QI + Sbjct: 475 VLVNLVSNALKFTERGS-VTCR-ARTEGHYIVVDVTDTGIGIPESEQHKVFEKFNQIGAT 532 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + +GTGLGL + K +V+++ G+ + S P G+ P+ Sbjct: 533 LTNKPKGTGLGLAICKHIVESHGGRIFYVSKPGSGSTFTFTLPIA 577 Score = 45.4 bits (106), Expect = 0.044, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 8/139 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + G L + + +G + + + R+ +V D + P + ++ + T Y Sbjct: 184 IFQSSLDGRLISANPAMASLLGYASTRELMRRIKNVVDQIVTHPEDR--QRIRSELTRYD 241 Query: 146 KTTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-LD 201 + ++ T + + A I E F G + V R D Sbjct: 242 QVKNLEVQMTTKTGNTIWGLINARRIRDAAGEPERFDG--SLQDVTVRKKAEQTLLRYHD 299 Query: 202 KKFSHLHEIKKGHSSVEKE 220 + + + E + + + Sbjct: 300 ELETRVAERTAELTRINER 318 Score = 41.6 bits (96), Expect = 0.58, Method: Composition-based stats. Identities = 17/247 (6%), Positives = 59/247 (23%), Gaps = 15/247 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 G + + + + ++G ++ +D Sbjct: 64 GRTGRITDAAGAAGTMLRQDRQALVGRLFEELLPQEAVDHLRGLFSGDFAAGRIETVLGR 123 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + V + + E G + KR ++K+ + Sbjct: 124 PGVRGGVSPSVEVTFRLA-----SGE-EGPIAIIVARDVTERKKNEQALKRAEEKYRGIV 177 Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 E + S + ++ ++ + + + + L Sbjct: 178 ENAAEGIFQSSLDGRLISANPAMASLLGYASTRELMRRIKNVVDQIVTHPEDRQRIRSEL 237 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 ++ E + T N +++ + E + ++ ++ Sbjct: 238 TRYDQVKNLEVQMT-TKTGNTIWGLINARRIRDAAGEPERFDGSLQDVTVRKKAEQTLLR 296 Query: 322 TPETVDK 328 + ++ Sbjct: 297 YHDELET 303 >gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032] Length = 877 Score = 333 bits (853), Expect = 1e-88, Method: Composition-based stats. Identities = 101/500 (20%), Positives = 185/500 (37%), Gaps = 38/500 (7%) Query: 333 FFVYSHGNLFYANPSFLL--------LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 F L N L ++ + + + + D + Sbjct: 1 MFYDKDERLVAWNAQVSRFYPGIGPHLVPGAALSALAVEFINTGFQTDSRSRDTLIASLL 60 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 R D C + + + + + + + Sbjct: 61 ANCRHDGHCEVRQLHERRLFIQHQRT---------------ADGGIISLHTDITALDTVQ 105 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLE 502 ++ E+ GI +L N A L G P + + + Sbjct: 106 STRQLLHDDFLLAAESIHIGIWDWQVTTDVLHLNDAFLNLLGEPRGQLQHTSRFLLSLIH 165 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLT 557 ++ + + + E + K L + I + T Sbjct: 166 PEDRDLLKNAMQRASEHQMP-VFECEIRVQHRSGKWLWMLLSGQIIALTVTGEIERLIGT 224 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ K+ + A A + KS FLA +SHEIRTP+ I+G +++ + Sbjct: 225 LQDITRRKEAELISRDAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTEL-- 282 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 N EY + + S +L I++D+LD SKIE+GK+ LH E V+L + + + Sbjct: 283 --NGEQREYLSLVMSSAQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMP 340 Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNE 735 A+EK+I + +P ++ D+ ++Q+ N+LSNA+ FTP G +I+++ + Sbjct: 341 LASEKQIELLVEVDERVPEMMRVDVVRLRQVLTNLLSNALKFTPQG-EILLAVAPAAQDG 399 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 E RVRD+G+G+ + + + F Q S R GTGLGL ++ +V G+ + Sbjct: 400 EWRFRVRDSGIGIPPEKQQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGQLTVA 459 Query: 796 STPAKGTLIEIIFPLYDTSH 815 S +G+ PL+ Sbjct: 460 SEANQGSEFSFTLPLHSAEQ 479 >gi|319793726|ref|YP_004155366.1| signal transduction histidine kinase with cheb and cher activity [Variovorax paradoxus EPS] gi|315596189|gb|ADU37255.1| signal transduction histidine kinase with CheB and CheR activity [Variovorax paradoxus EPS] Length = 1556 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 100/624 (16%), Positives = 210/624 (33%), Gaps = 44/624 (7%) Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + IF + + + V+ L D S Sbjct: 802 DRNLRVMRFTPSAATIFKLIASDTGRPLSDLVTGLDYPELSDDAR---------AVLRSL 852 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 P + + N Y + + + ++ + + V Sbjct: 853 QPSEREVGDARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQESLRQSQERFSAIV 912 Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 ++ + G + +AN + LT Y + + L + A + + + + Sbjct: 913 NQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGRR-VLDFVHPADLPATQSLFEQLA 971 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 A ++ N E + + + + + + ++ + Sbjct: 972 AQGK-----PFQAENRIVRKNGE-VMWLHKSVTVLTDGGGRPDSALIVCTDVSERKLAEE 1025 Query: 446 KMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 + ++ +LE + I ++ E + S N +L GY ++IL + + + Sbjct: 1026 ALRESQERMRLMLENAIEYAIFSVDMERRVTSWNAGAERLLGYSEQEILGRSADLIFTEE 1085 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560 + + E + L K+ + + + D Sbjct: 1086 DRAAG-APVEEARTALAEGRAADDRLHQRKDGSRFWASGALMPMHDGEGRSIGLVKVLRD 1144 Query: 561 ISEWKQEKNKLSHAK--------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 S+ + + +L ++ + E + K FLA +SHE+R PL +I G Sbjct: 1145 QSKQRAAQQELEQSRGELLSALRANEAARRALETADAAKDRFLAVLSHELRNPLASISGA 1204 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +E++ + L A I R +++ ++ +LLD+S + G++ L E +S Sbjct: 1205 AELLAPE---SLATQDQARAARVIRRQASVMKVMLGELLDVSSLRQGRLALSRERISAQA 1261 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 A+ V+ R + A + AD + Q+ N+LSNA +TP+ G+I Sbjct: 1262 IADAALETVRPLIEHGRHTLDLDIAEEEIALDADPIRLSQVLSNLLSNAAKYTPAPGRIA 1321 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 +S + + V V D G+GM +E + F Q ++ G G+GL L + +V+ Sbjct: 1322 LSVRAEARDAV-FEVTDDGIGMEPESIETMFEMFVQSEHAHARANGGLGIGLALVRNIVE 1380 Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809 + G S +G + P Sbjct: 1381 LHGGTVTGHSEGLGRGCRFTVRIP 1404 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 67/500 (13%), Positives = 142/500 (28%), Gaps = 43/500 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA + IS + + + + L + + +R Sbjct: 578 VDAGHEMLHISPAATAFLYFGGGEPSRNVMQAIVPDLKAELQTALHHAHERHEPVEVAPV 637 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 I G V + ++ P+ F G GF + L +R D + L Sbjct: 638 RARIAGG--EVEVTVSVRPV----EAFGG--GFLV------------LLRRQDLRQDALE 677 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + + + + + P P ++ +V L + + L S E Sbjct: 678 GNSGETAPAAGDAFAVLPRMKPEPIASHLEREVGRLKARLRQTVEQYEVSTEELKASNEE 737 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 E+ H T ++ ++ + L ++ A D + + Sbjct: 738 LHAMNEELHAAAEELDTSREELQSINEELTTVNQELKNKVDDLGHANSDIVNLMDATAI- 796 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 F+ + + PS + K + D L T LD P+LSD+ L Sbjct: 797 ---ATVFLDRNLRVMRFTPSAATIFKLIASDTGRPLSDLVTGLDYPELSDDARAVLRSLQ 853 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 S+R + + ++ + + Sbjct: 854 PSEREVG------------DARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQESL 901 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + +I+ S G+A + +G I N L GY +++L + F+ Sbjct: 902 RQSQERFSAIVNQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGRRVLDFVHPADLP 961 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISE 563 ++ + + K +++ L + L + D+SE Sbjct: 962 ATQSLFEQLAAQGKP--FQAENRIVRKNGEVMWLHKSVTVLTDGGGRPDSALIVCTDVSE 1019 Query: 564 WKQEKNKLSHAKKIAEKESS 583 K + L +++ Sbjct: 1020 RKLAEEALRESQERMRLMLE 1039 Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 32/387 (8%), Positives = 100/387 (25%), Gaps = 22/387 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150 G + + G +++G R+ D + + + L + + + Sbjct: 925 DGEITFANTCYRALTGYGDDELLGRRVLDFVHPADLPATQSLFEQLAAQGKPFQAENRIV 984 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G + + + + + + ++ + E Sbjct: 985 RKNGE--VMWLHKSVTVLTDGGGRPD--SALIVCTDVSERKLAEEALRESQERMRLMLEN 1040 Query: 211 KKGHS----SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--KTEKYPLLTS 264 ++ +E+ + + + + ++D + Sbjct: 1041 AIEYAIFSVDMERRVTSWNAGAERLLGYSEQEILGRSADLIFTEEDRAAGAPVEEARTAL 1100 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTP 323 E + + +++ + + S + R+ A E E Sbjct: 1101 AEGRAADDRLHQRKDGSRFWASGALMPMHDGEGRSIGLVKVLRDQSKQRAAQQELEQSRG 1160 Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 E + A FL + ++ + + G + LL L+ + + Sbjct: 1161 ELLSALRANEAARRALETADAAKDRFLAVLSHELRNPLASISGAAELLAPESLATQDQAR 1220 Query: 383 PVMLYRSD--------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + R + + L + + A + + ++G Sbjct: 1221 AARVIRRQASVMKVMLGELLDV-SSLRQGRLALSRERISAQAIADAALETVRPLIEHGRH 1279 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461 D+D + ++ + ++L +L Sbjct: 1280 TLDLDIAEEEIALDADPIRLSQVLSNL 1306 Score = 65.4 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 23/314 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 +++D + + + +G +++G + + + Sbjct: 1046 IFSVDMERRVTSWNAGAERLLGYSEQEILGRSADLIFTEEDRAAGAPVEEARTALAEGRA 1105 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 A +P++ R G+V V R + RA + L++ Sbjct: 1106 ADDRLHQRKDGSRFWASGALMPMHDGEG-----RSIGLVKVLRDQSKQRAAQQELEQSRG 1160 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + + + + K++ ++ + + LL E Sbjct: 1161 ELLSALRANEAARRAL---------ETADAAKDRFLAVLSHELRNPLASISGAAELLAPE 1211 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 SL Q+ + + L S + ET Sbjct: 1212 --SLATQDQARAARVIRRQASVMKVMLGELLDVSSLRQGRLALSRERISAQAIADAALET 1269 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 V + + + + + D I ++ LS LL + + Sbjct: 1270 VRPL-----IEHGRHTLDLDIAEEEI--ALDADPIRLSQVLSNLLSNAAKYTPAPGRIAL 1322 Query: 386 LYRSDRTCIAASAR 399 R++ Sbjct: 1323 SVRAEARDAVFEVT 1336 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 47/437 (10%), Positives = 119/437 (27%), Gaps = 28/437 (6%) Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-PPHLRMK 237 R F + + + + + + + P P + Sbjct: 491 RLFAVADKPHRIYLRCQSRAGAPVPPRPVGPPRAAAARHSQAVIPLAAIAPPVAPQAMLP 550 Query: 238 NKVSSLTEYYAHKDDVLKTEKYP---LLTSEESSLPEQED------FHTINLNQYTKKQY 288 T +A L P L+ + L F ++ + Sbjct: 551 TLRGGQTMTWAEMHLQLVDLLAPPSILVDAGHEMLHISPAATAFLYFGGGEPSRNVMQAI 610 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 L+ + + + R+ P A V P + G L Sbjct: 611 VPDLKAELQTALHHAHERHEPVEVAPVRARIAGGEVEVTVSVRPVEAFGGGFLVLLRRQD 670 Query: 349 LLLTKYK--SVDDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 L + S + AG +L P+ ++ + V ++ + T + Sbjct: 671 LRQDALEGNSGETAPAAGDAFAVLPRMKPEPIASHLEREVGRLKARLRQTVEQYEVSTEE 730 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SI 457 N A + + ++ + + ++++ +V L ++ Sbjct: 731 LKASNEELHAMNEELHAAAEELDTSREELQSINEELTTVNQELKNKVDDLGHANSDIVNL 790 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 ++AT+ ++R ++ + + +F D +P + + ++ +L Sbjct: 791 MDATAIATVFLDRNLRVMRFTPSAATIFKLIASD-TGRPLSDLVTGLDYPELSDDARAVL 849 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575 R + + L+ DI+E K + L ++ Sbjct: 850 RSLQPS----EREVGDARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQESLRQSQ 905 Query: 576 KIAEKESSHKSDFLARV 592 + + S +A++ Sbjct: 906 ERFSAIVNQASVGVAQM 922 >gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher activity [Stigmatella aurantiaca DW4/3-1] Length = 1386 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 113/607 (18%), Positives = 224/607 (36%), Gaps = 33/607 (5%) Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275 E + MK ++++ +Y + L ++ E + E+ Sbjct: 631 PFRSETASPAKARDAVGVTAMKRELAATRDYLQSLLEEHGRTNDALASTNEELVSGNEEL 690 Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335 ++N T K+ + + L RN + +D IP + Sbjct: 691 QSLNEELETAKEELQSTNEELTTVNDELHSRNQ-----ELNLANGDLVNLLDTVDIPVII 745 Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394 + P + D ++ + P L A Sbjct: 746 LDLERRIRRFTPKARSIMNVLPSDVGRPLEDITLNVSVPDLGAQVAEVMKT--------- 796 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 AR+ + + + ++E Sbjct: 797 ---ARVREFEVQNWTGHWFRMHLRPYKTPENRIDGAILSLVDIDALKHQVSQVEWARDDA 853 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYL 513 I+EA + +++ +LS N+A + + + + K + L Sbjct: 854 TGIVEAVQVPLVVLDGRMRLLSANKAFYQAYPASAAETVAKSLFELSGGAWDVPELRAAL 913 Query: 514 TEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKL 571 ++L+ + + LE + + ++ +SL L + DI+E KQ + + Sbjct: 914 GQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRELER 973 Query: 572 -------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 AK+ AE+ + K FLA +SHE+RTPL+ ++ +++++ G + + + Sbjct: 974 AELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDAKIK 1030 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+RS + + +++DLLD+S+I +GK+ + F+ V L V A+ V A K I Sbjct: 1031 RASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSI 1090 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 L T+ ++ + D ++QI N+L+NAI F+ G ++ + L+V D Sbjct: 1091 LFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLE-RMEGSARLQVSDR 1149 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803 G G+ L++ F Q +S G GLGL + + +V+ + G S +G + Sbjct: 1150 GAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1209 Query: 804 IEIIFPL 810 +I PL Sbjct: 1210 FTVILPL 1216 >gi|282897084|ref|ZP_06305086.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] gi|281197736|gb|EFA72630.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis brookii D9] Length = 638 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 90/413 (21%), Positives = 182/413 (44%), Gaps = 30/413 (7%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473 I + E + E ++ + ++ E +L +++ +DG +I+ Sbjct: 236 IDLPLGGELGELIFSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 295 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ++ N ++F + D++ + +L + + L E+ S R++ E Sbjct: 296 VILVNPTARRIFAWEGTDVVGQNLLNYLPHSVQMEITRTLYEMAS-GERESAEFRIPLRE 354 Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 ++ + + + ++T+ DI+ + + KS F++ Sbjct: 355 PTKRTIRILLTTVLDSQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 400 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPL I + E + + LG E+ ++ + + +VND+LD+SK+ Sbjct: 401 NISHELRTPLFNIKTYIETLHD-YGDDLGAKERQEFLATVNHETDRLTRLVNDVLDLSKL 459 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESG+ HF+ V L +A+ + + QL A EK I + A+N+P ++ + + Q+ N Sbjct: 460 ESGR-TYHFDGVDLAQALEQTLRTYQLNAKEKGINLVQELASNLPMVIGNYDLLLQVFGN 518 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQI 763 ++ NA+ FTP+GG + I V + + DTG+G+ + E F ++ Sbjct: 519 LIGNALKFTPAGGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPEDQEAIFDRFFRV 578 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 N + EGTGLGL + + +++ + + ++ S GT L+D P Sbjct: 579 EN-RVHTLEGTGLGLSIVRNIMERHHSQMHLVSEVGVGTTFWFDLALFDEDKP 630 >gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1358 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 122/815 (14%), Positives = 254/815 (31%), Gaps = 90/815 (11%) Query: 53 NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN----IDAHGYLKEISEELPKTIGN 108 V+ + +F DP G L + E+ I Sbjct: 414 PLAAPPGVEVAPAESVAGSGSFAGDPGWLASGHVPQYAPAAGRDGGLVLVVEDNRDMIAY 473 Query: 109 YAFKMIGMRLCDVSDILH----------IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158 I V+ + P+ + D++ + Sbjct: 474 IVD--ILRPHHQVAVAFDGEEGLRKALDLRPDLIVCDVMMPRVDGQRMVEQLRRYPGMAD 531 Query: 159 VPIDLAALPIYSR------NREFSGFRG---------FGIVHVNRVDNDPRALGKRLDKK 203 VP+ + + G+ + R +A + + Sbjct: 532 VPVLMLTAKADDELRVHLLHGAVQGYIQKPFTAAGLLASVHAELRDRARHKAELDESETR 591 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-- 259 F E ++ +++ L + L ++ Sbjct: 592 FRATFEQAAMGLALVAPDGSWLRVNGKLCAIVGYSAEELTKLRFQDITHPEYLDSDLALM 651 Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314 LL + ++ + ++ + + Sbjct: 652 HRLLAGTIDNYSLEKQYLRKGGEPVWVNLTVALVRKADGTPDYFISVVEDIQQRKTFERR 711 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E E + V+ P F+ G YANP+ +L +I G L + Sbjct: 712 LAESEERFRQVVEHAPEAIFLQKEGRFAYANPAARVLFGVDDPKEIMGRGVLEFFHPDDR 771 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 I+ + R IQ + Sbjct: 772 SMVVERIRQLNEERRTVPRGHV-----RIQRRDGTVVDAETSAVPFRLGGRH--GALVFV 824 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + D +R++ L + + ++ ++L NR+ + Sbjct: 825 RDISDRLWAEREIRD----LARFPGENPNPVMRVSPALVLLHANRSSGTFL-----ECYG 875 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 + + E L +T E L + + + Sbjct: 876 ARVGSPFP----APFAEVVAESLRTWAPRTFEAQCLDRI-------YAMTVNPIADGGYA 924 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++ DI+E K + +L +A+++AE + KS FLA +SHE+RTP+ ++G +++ Sbjct: 925 NIYGMDITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQLLDATP 984 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 +P Y +G+ + ++ DLLD++++ESG++ + EP + E +++ Sbjct: 985 L----DPEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQEVLAV 1040 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 ++ A+ K I++ + +L D + ++Q+ LNI+ NA+ FT G + + + Sbjct: 1041 LRPEADRKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDRG-HVRLLARFEPS 1099 Query: 735 E------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + L V DTG+G+ + L +PF Q+ ++ R G GL Sbjct: 1100 AGPSATAEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHGGAGL 1159 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GL + + +VD G+ + S +GT + + P+ Sbjct: 1160 GLSIVRRIVDLMEGEVSMTSEEGRGTTVTLRLPVA 1194 Score = 154 bits (388), Expect = 8e-35, Method: Composition-based stats. Identities = 49/256 (19%), Positives = 96/256 (37%), Gaps = 17/256 (6%) Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S + +L+ AE+ K+ F A +SHE+R T + ++ + Sbjct: 172 SRLRATNAELAARCARAEELDVLKTRFFANISHELR---TPLTLLLGPLERLLAETSEDD 228 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + R+ L+ V+D+LD+S++++G M L + A + Sbjct: 229 EHRHSLFTMLRNARLLHQHVDDMLDLSRVDAGAMQPRHAEADLSALTRTTCAYFDTLAAQ 288 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + + D ++I LN+LSN+ FTP GG + ++ +E +L V Sbjct: 289 RGMHYGVQAPLRL-DAQVDTDKYRRILLNLLSNSFKFTPDGGSVSVTLE-RQGDEALLSV 346 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ------IRGEGTGLGLPLAKAMVDANMGKFYIF 795 D G G+ + + + Q + G + K + + G + Sbjct: 347 SDDGPGVPAHLRGAVFERYRQSGEGARGLHGGSGLGL------AIVKEFAELHGGTTSVG 400 Query: 796 STPAKGTLIEIIFPLY 811 G L ++ PL Sbjct: 401 QGAEGGALFQVRLPLA 416 >gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP 69.14] Length = 999 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 113/541 (20%), Positives = 197/541 (36%), Gaps = 42/541 (7%) Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPS----- 347 + + F + + L V P V Y N S Sbjct: 207 DPTHRLFVSMQQPFDKPEPLPAEGVNPLVDAAVSLSPAGTLVNYQQQRYLQINRSLQELG 266 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 +++L + + A L L + I + + I Sbjct: 267 WVVLRAIPYTEAMAPAQTSFHRLLLITLIATSCIGLAGIGLAHSITKPIEKMTRRIDQMA 326 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIA 466 ++ + + E + + + L ++L+A S+ I Sbjct: 327 DSGRFDGNFLEQGGPEVCALARAMNRLAE--QRKTAEIALSQAERFLATVLDAASEISII 384 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL------- 519 N+ G+I + N L GY +++ K L L Sbjct: 385 ATNKHGLITAFNTGAEHLLGYSKHEMIGKQTPASLHLEEEVAARSVELTALLGYPVEGFR 444 Query: 520 ------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 + ++ K + + + +I+ + + Y DI+E+K+ Sbjct: 445 VFVDIAEQENHEKREWTYVHKNGRHIPVSLIVTTMRNEAGEITGYLGIAEDITEYKRM-- 502 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + KS+F++ VSHE+RTPLT+I G +I RF L + Sbjct: 503 ------------NKMKSEFISTVSHELRTPLTSISGALGLIIGSRFEELPDKTQK-LLKT 549 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 R+ + ++NDLLDI KI +GK++ L V +AI Q Y + + + IR Sbjct: 550 AHRNNQRLSHLINDLLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLI 609 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 N + D + + Q+ N+LSNAI F+ GQ+I+ T T N + I+ V D G G+ Sbjct: 610 CDANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQVIVEVT-TDNGKAIVSVIDQGPGIN 668 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E+ + F Q +S EGTGLGL +++ +++ G+ ST KG+ + P Sbjct: 669 QAFRERIFQRFAQADSSDTRAKEGTGLGLAISRELIERMGGQIDFESTMGKGSRFFFVLP 728 Query: 810 L 810 L Sbjct: 729 L 729 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 39/339 (11%), Positives = 90/339 (26%), Gaps = 30/339 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLL--------- 137 + HG + + +G +MIG + + + LL Sbjct: 386 TNKHGLITAFNTGAEHLLGYSKHEMIGKQTPASLHLEEEVAARSVELTALLGYPVEGFRV 445 Query: 138 -----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 +++N + T G ++P+ L + + E +G+ G I Sbjct: 446 FVDIAEQENHEKREWTYVHKNGR--HIPVSLIVTTMRNEAGEITGYLG--IAEDITEYKR 501 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + + + HE++ +S+ I + + +K L + + Sbjct: 502 MNK--MKSEFISTVSHELRTPLTSISGALGLIIGSRF----EELPDKTQKLLKTAHRNNQ 555 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 L LL E+ + + ++ +Q T Q+ + + Sbjct: 556 RLSHLINDLLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLICDANTV 615 Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + + L + F HG + V I+ G++ Sbjct: 616 LVHVDSQRLLQVLANLLSNAIKFSSDHGQVIV---EVTTDNGKAIVSVIDQGPGINQAFR 672 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + T + + I+ Sbjct: 673 ERIFQRFAQADSSDTRAKEGTGLGLAISRELIERMGGQI 711 >gi|119945803|ref|YP_943483.1| fused multi-sensor protein [Psychromonas ingrahamii 37] gi|119864407|gb|ABM03884.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37] Length = 882 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 176/395 (44%), Gaps = 18/395 (4%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 K + L S+++ DG+ I+ + I+ S N A ++FGY E+++ Sbjct: 215 VRRVHREILKAVMSEKHLSSVIDHMLDGLITIDAQCIVQSFNPAAERIFGYKSEEVVGGS 274 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLP--FSS 552 + + + S N YL L + T + + +G K+ L + I ++ + Sbjct: 275 VNILMPEPDYSEHNDYLKRHLDTGITNTTGISRKVVGKRKDGSTFPLDLSINEMHLSETH 334 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + T+ DIS +Q + +L AK+ AE+ S K FLA +SHEIRTPL ++G EV+ Sbjct: 335 RFFCTVRDISVRQQHEQQLIAAKETAEQVSQAKDSFLATMSHEIRTPLAGMLGMLEVLSM 394 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 + S +L IVND+LD SKI+ GK+ L + S+ + E + Sbjct: 395 SPL----DHEQEPILKAAWDSARNLLRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVV 450 Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + A+ K + + + + D + Q+ N +SNA+ FT G +I + Sbjct: 451 NTYSHVASAKNLKLWQHADSQLSAAHIVDPLRLSQVLNNFVSNALKFTEQG-EIELCAEL 509 Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 S E + V+DTGVG+ K + F Q + GTGLGL + + + Sbjct: 510 LEQLESGERIRFFVKDTGVGIPKIVQPKLFERFQQESADTARQYGGTGLGLSICLHLAEF 569 Query: 788 NMGKFYIFSTPAKGTLI--EIIFPLYDTSHPHDCI 820 GK + S P G + +I P+ ++ P + + Sbjct: 570 LDGKIELVSEPGLGAIFSITVILPI--SAAPGEAL 602 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 17/241 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT----W 143 IDA ++ + + G + +++G + + + + N+++ L T Sbjct: 246 IDAQCIVQSFNPAAERIFGYKSEEVVGGSVNILMPEPDYSEHNDYLKRHLDTGITNTTGI 305 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 K +G+ + + + + S F F V V + Sbjct: 306 SRKVVGKRKDGSTFPLDLSINEM-HLSETHRF-----FCTVRDISVRQQHEQQLIAAKET 359 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + K + ++P + +V S++ H+ + + + Sbjct: 360 AEQVSQAKDSFLATMSH-----EIRTPLAGMLGMLEVLSMSPLD-HEQEPILKAAWDSAR 413 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + + + D+ I + ++ +E SH + ++ Sbjct: 414 NLLRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVVNTYSHVASAKNLKLWQHADSQLS 473 Query: 324 E 324 Sbjct: 474 A 474 >gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1] Length = 1223 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 115/769 (14%), Positives = 236/769 (30%), Gaps = 28/769 (3%) Query: 60 ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119 V+ +SE + +G A IG Sbjct: 320 RLVTERALAESERRYRVLVENFPESAVMLFSDDKRCMLADGAGLAAMGITANSAIGRSPQ 379 Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 ++ P D + W G L I+L P+ E S + Sbjct: 380 ELLPTHAAPPLAEAIDNALAGDVWRGSFIL-------GERLIELHVSPMPPLTEEESSYC 432 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-------EKYDIFSQQSPPP 232 ++ R + + + I + S +++ P Sbjct: 433 -LAVLRDATEAERIRRELRDSAYRLNEAQRIARLGSFEANFVTGDCVWSHELLRLVGLSP 491 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + S + + L+T + + + + F T + + + Sbjct: 492 DDAPASLESFFERFAPEQRAWLETLLHGPMQGPLAVIEHSFPFRTADDRNRHGRLHLHFH 551 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLL 351 + S + + + + I Sbjct: 552 RGESGMPAIGYGTMQDITELHEATIALKRSEADLNEALHIAQMASITHEHGTGTTRISST 611 Query: 352 TKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + L P L + Sbjct: 612 LLHLLHAEGTGRPTVELLRQYMPSLLPLVRDGVAPPQHHQPPAGDGYRTVIPFTTVSGEQ 671 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-N 469 + + G + + + ++ + +G+ ++ + Sbjct: 672 RHGQLHLRTLRDVSGNAVVTRGAMQDVTYRVSIENALRRSESSYRALADNLPNGVVLLVD 731 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 I+ + P+T L + + + E Sbjct: 732 PADILRVAAGQGLHSLLDSGAPCIPAPYTTILPSPLATELMPLIMSAR-HGTTAHREIPY 790 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + L L + + L + D++ KQ + ++ ++ A S KS F Sbjct: 791 GAAVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAMSELKSQF 850 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +A +SHE+RTPL+ I+G ++V P Y + + +L ++NDLLD S Sbjct: 851 VANISHEMRTPLSGILGIADVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFS 907 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707 ++E+G+M L L V +A++ + + A K + + N +P + D ++QI Sbjct: 908 RLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQI 967 Query: 708 ALNILSNAIHFTPSGG-QIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +N++ NA+ FTP G + +ST E ++ + DTG G+ + +L + F Q Sbjct: 968 LVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQA 1027 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 S + G+GLGL +++ +V+ G + STP +G++ PL D Sbjct: 1028 DGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTLPLGD 1076 >gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1] gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp. 2_1_22] Length = 785 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 109/624 (17%), Positives = 224/624 (35%), Gaps = 40/624 (6%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + L + ++ + G V E+ + + ++ Y + Sbjct: 48 AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + +++ L + H + + + L + Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155 Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + +DK V G L YAN F+ G+ + D Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209 Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P + + R + A A ++E ++ + N+ Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487 + D + ++ + L IL + + + E L N+A + G Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325 Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P + E+L R +++ L T + +++ + Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385 Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + DI+ + + +L A+ AE+ KS FLA +SHEIRTPL AI+G Sbjct: 386 PMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++ Y+ I+++ +++L ++ND+LD+SKIE+G + P++L Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E ++ + E + + + I D + Q+ N L+NA FT +G +I Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + V+DTG+G+ +++ + F ++ + +GTGLGL + + ++ Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S KG+ P Sbjct: 615 EKIGGEIGVTSELGKGSTFYFTIP 638 >gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4] Length = 1223 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 115/769 (14%), Positives = 236/769 (30%), Gaps = 28/769 (3%) Query: 60 ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119 V+ +SE + +G A IG Sbjct: 320 RLVTERALAESERRYRVLVENFPESAVMLFSDDKRCMLADGAGLAAMGITANSAIGRSPQ 379 Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179 ++ P D + W G L I+L P+ E S + Sbjct: 380 ELLPAHAAPPLAEAIDNALAGDVWRGSFIL-------GERLIELHVSPMPPLTEEESSYC 432 Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-------EKYDIFSQQSPPP 232 ++ R + + + I + S +++ P Sbjct: 433 -LAVLRDATEAERIRRELRDSAYRLNEAQRIARLGSFEANFVTGDCVWSHELLRLVGLSP 491 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + S + + L+T + + + + F T + + + Sbjct: 492 DDAPASLESFFERFAPEQRAWLETLLHGPMQGPLAVIEHSFPFRTADDRNRHGRLHLHFH 551 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLL 351 + S + + + + I Sbjct: 552 RGESGMPAIGYGTMQDITELHEATIALKRSEADLNEALHIAQMASITHEHGTGTTRISST 611 Query: 352 TKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + L P L + Sbjct: 612 LLHLLHAEGTGRPTVELLRQYMPSLLPLVRDGVAPPQHHQPPAGDGYRTVIPFTTVSGEQ 671 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-N 469 + + G + + + ++ + +G+ ++ + Sbjct: 672 RHGQLHLRTLRDVSGNAVVTRGAIQDVTYRVSIENALRRSESSYRALADNLPNGVVLLVD 731 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 I+ + P+T L + + + E Sbjct: 732 PADILRVAAGQGLHSLLDSGAPCIPAPYTTILPSPLATELMPLIMSAR-HGTTAHREIPY 790 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 + + L L + + L + D++ KQ + ++ ++ A S KS F Sbjct: 791 GAAVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAMSELKSQF 850 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 +A +SHE+RTPL+ I+G ++V P Y + + +L ++NDLLD S Sbjct: 851 VANISHEMRTPLSGILGIADVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFS 907 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707 ++E+G+M L L V +A++ + + A K + + N +P + D ++QI Sbjct: 908 RLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQI 967 Query: 708 ALNILSNAIHFTPSGG-QIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 +N++ NA+ FTP G + +ST E ++ + DTG G+ + +L + F Q Sbjct: 968 LVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQA 1027 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 S + G+GLGL +++ +V+ G + STP +G++ PL D Sbjct: 1028 DGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTLPLGD 1076 >gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum USDA 110] Length = 776 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 122/647 (18%), Positives = 250/647 (38%), Gaps = 53/647 (8%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 D++ + S ++ I + Q R +S +T + + + Sbjct: 131 DRRILARIPVDSDPSGNDRLLDSITTAQLLAAPPR-DGNISDMTLPNGNAAMAISRQIKS 189 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L E + + D Sbjct: 190 LPGFVTVIQERNEPIWGSDAALSVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRG 249 Query: 321 LTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +++ + + G + + + S + +++ G ++ L+ + + Sbjct: 250 RIDTALNRGRCGLWDWDLSRGRI-FWSQSMFSMLGLDGRNELLTFGEVNALVKSDDIDLF 308 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 ++ + D I + R+ + + + + + + ++ GI + Sbjct: 309 EIADQLISEKID--HIDQTFRMQHV---DGHWIWLRVRCEKTSGATDSSVHLIGIAVDIT 363 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPF 497 + + + ++L +E + + + ++ N +L P ++ + Sbjct: 364 EQKSLAERTVEADLRLRDAIETIPEAFVLWDASDRLVLCNSHFQRLHKLPDSAVIPGTSY 423 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 LE + E + + + L + ++ Y Sbjct: 424 ETVLEVGRMPEVRTRHNETAAQG---PGARTFEAQLDDGSWLHIS---ERRTKDGGYVSV 477 Query: 558 MHDISEWKQEKNKL-----------------------------------SHAKKIAEKES 582 DI+ K+ + KL K AE+ + Sbjct: 478 GTDITRIKEHEQKLVDNDLRLRATVIDLKRSQAALERQTNELADLAEKYQREKTRAEEAN 537 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS FLA +SHE+RTPL AIIGFSE++ + FG LG+ +Y EY I SG+ +L+++N Sbjct: 538 QTKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVIN 597 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD+SKIE+G+M L E + L ++E++ +V A +K + + +I ++AD R Sbjct: 598 DILDMSKIEAGRMKLDMEELDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRR 656 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 + KQI +N+LSNA+ FTP GG+I++ + + ++L + DTG+G+ + L + +PF Q Sbjct: 657 ATKQIIVNLLSNAVKFTPDGGRIVVRSRQLDD-RIVLMIADTGIGIAPHSLARLGRPFEQ 715 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + G+GLGL +A+++ + G + S GT++ + P Sbjct: 716 VESQLTKTYHGSGLGLAIARSLAQLHGGSMRLRSKIDVGTVVRVTLP 762 >gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118] gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118] Length = 621 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 166/399 (41%), Gaps = 36/399 (9%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 E +++ E E +L S+L SDG+ +R G I N Sbjct: 234 GNDELGQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMA 293 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++L K L+ + L + + L + EK + + Sbjct: 294 MNYLDISEGEVLGKSILDILDIRNQYTLRDLLEKQDEVVLDMSGEKDLILNA------YF 347 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +I ++ F S +HD++E ++ + F++ VSHE+RTPLT Sbjct: 348 SVIQRESGFISGIVCVLHDVTEQQKI--------------DRERKQFVSNVSHELRTPLT 393 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++ + E + + G + + E+ + ++ ++NDLL +S+++SG + L E Sbjct: 394 SMRSYIEALND---GAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLE 450 Query: 661 PVSLDEAVSEAISLVQLYANEKRI----------LIRTSFANNIPRILADLRSVKQIALN 710 V+++ V+ + + + +I I+ F + D Q+ N Sbjct: 451 LVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVELDTDKFIQVVDN 510 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I++NAI ++P GG I ++ VIL + D G+G+ +L F ++ ++ Sbjct: 511 IMNNAIKYSPDGGVITCRL-LETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRA 569 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++K +++ + G+ ++ S KG+ I P Sbjct: 570 QGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 608 >gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein [Burkholderia pseudomallei K96243] Length = 771 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|322418816|ref|YP_004198039.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] gi|320125203|gb|ADW12763.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18] Length = 856 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 102/575 (17%), Positives = 193/575 (33%), Gaps = 51/575 (8%) Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L + +S E I+ ++ + S + + Sbjct: 170 RTDPVALLAVGNSAQNAEFSRRISDSEEALFGVGNLVGLLSPAIENQIHYAGMKKALEQE 229 Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDA 372 E + F G N + + Y++ +D+ L Sbjct: 230 RVAEAKYRGIFENAMEGIFQTTPQGRFLSCNSATAAILGYETPEDVLEYVVDIGRQLYVD 289 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 PK + +M R + N + + + ++ + +G Sbjct: 290 PKRREELYG--MMYQRQNVKNFEVEFY-----RNDGSKIWVNLSTRPAFDENGAFIYIDG 342 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 I + + + + + +L ++E + I I + G I N +L GY +E++ Sbjct: 343 IIQDITERKRAEEALR----KLSQVVEQSPVSIVITDTAGRIEFVNPKFVQLTGYSLEEV 398 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 K + L E ++ + E L K + S I + + Sbjct: 399 RGKNPRFLNSGKDGPEASEKLWETITAG--EVWEGEFLNRKKSGEFFSEHATISPIRDGN 456 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + DI+E K + +L ++K+ V+H+ L+ I+G ++ Sbjct: 457 GVITHFLAIKEDITERKLLEAQLFQSQKM-----ESIGRLAGGVAHDFNNMLSVILGCAQ 511 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + + G+P + + I +G +I LL S+ ES + V+L+E Sbjct: 512 LALRE--AEEGSPLWQD-LEQIMHAGKRSSEITRQLLAFSRNES----VTLREVTLNEQF 564 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 E + + I + A ++ + AD + QI +N+ NA GG + I Sbjct: 565 VEMQKTL-GRLLGEDIKVTFKPAPHLWSVKADTTQLDQILVNLAVNARDAMSKGGLLTIE 623 Query: 729 TT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 T+ + + V L V D G GM L +PF G+GT Sbjct: 624 TSNVRVDRKYSQFHLDASPGDYVQLSVSDNGCGMDRETLSHIFEPFFTTK----EVGKGT 679 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL +V + G ++S P +GT +I FP Sbjct: 680 GLGLATVYGIVRQHNGFINVYSEPGQGTTFQINFP 714 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 34/312 (10%), Positives = 93/312 (29%), Gaps = 18/312 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142 + G + +G + + + D+ L++DP G + +RQN Sbjct: 247 IFQTTPQGRFLSCNSATAAILGYETPEDVLEYVVDIGRQLYVDPKRREELYGMMYQRQNV 306 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G+ + ++L+ P + N F G I+ ++L Sbjct: 307 KNFEVEFYRNDGS--KIWVNLSTRPAFDENGAFIYIDG--IIQDITERKRAEEALRKL-- 360 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYP 260 S + E + I L +V + + Sbjct: 361 --SQVVEQSPVSIVITDTAGRIEFVNPKFVQLTGYSLEEVRGKNPRFLNSGKDGPEASEK 418 Query: 261 LLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + + +F + +++ +++ + +L+ + + + Sbjct: 419 LWETITAGEVWEGEFLNRKKSGEFFSEHATISPIRDGNGVITHFLAIKEDITERKLLEAQ 478 Query: 319 ENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + E++ + + N+ L ++ + + L ++ A K S Sbjct: 479 LFQSQKMESIGRLAGGVA-HDFNNMLSVILGCAQLALREAEEGSPLWQDLEQIMHAGKRS 537 Query: 377 DNNAIKPVMLYR 388 + + R Sbjct: 538 SEITRQLLAFSR 549 >gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC61] gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp. Y412MC52] Length = 609 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 161/390 (41%), Gaps = 25/390 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R G ++ N A Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L L L E SL L + ++ L + Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ F + + +HDI+E ++ + F+A VSHE+RTPLT + Sbjct: 350 IQKEGGFVNGLIVVLHDITEQEKI--------------DRERRQFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + + ++ +VNDLL +SK++S L ++ Sbjct: 396 KSYLEALGDGAWQ--DKDIAPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + I + I I D + Q+ NI+SNA+ ++P GG Sbjct: 454 FSAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I +E+I+ V D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 TITFRVR-ELADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +V A+ G + S KGT I PL Sbjct: 572 VVVAHGGTIWAESKEHKGTTIYFTLPLERE 601 >gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278] gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS278] Length = 787 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 93/551 (16%), Positives = 195/551 (35%), Gaps = 65/551 (11%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-------YANPSFLLLTKYKSV 357 +++ +T + G+ + +T + + Sbjct: 87 SAQARAMTQALTRQNEQLAQTTKLLNEAQRIGRLGHWMTAEGDAAVWSEELFEITGLEPL 146 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + + + + + + A + + + + Sbjct: 147 SSVSFSKMIEII------HPEDVGTYIRARDRTLKTGCALKQDLRVIRPDGEIRWIRIVA 200 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + GI + + + + + L +EA + G + +++ + + Sbjct: 201 DPIDDVDGRFRERFGIVQDITERKQAEVAADQAQQLLLDAIEALTKGFVLFDKDDRFVLS 260 Query: 478 NRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 N ++F G D++RK L + +L + ++ Sbjct: 261 NTRFREMFPGWATLMRPGISFTDLMRKAHDHGLVRPKGDGFEDWLERKRA--WHLGGSRM 318 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------------K 575 + + + + DI+ +K + +L + Sbjct: 319 IEHREINGRWIQ---SVDHRISDGGTVCLVTDITAFKTVQAELEQKLAYVQAIRSDLEEQ 375 Query: 576 KIAEKESSH---------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 K + + KSDFLA +SHEIRTPL+ ++G ++++ G N Sbjct: 376 KRELEATGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSGMVGMVDLLR----GTSLN 431 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 Y + S +L+L ++ND+LD SK+E+GK+ + V A+S + A Sbjct: 432 DEQKRYTSLAKESADLLLQVINDILDFSKLEAGKLKSECIDFDVPSLVESAVSFMGEKAR 491 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEV 737 + + ++ SFA +P+ + D ++Q+ LN++ NAI FT G I + +H + V Sbjct: 492 RRGLDLKVSFAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQGA-IEVHASHRELDDGAV 550 Query: 738 --ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + V D+G+GM+ + PF Q S + G+GLGL + K + G + Sbjct: 551 DLRIEVIDSGIGMSQEIQAQIFDPFVQADTSISRKYGGSGLGLAICKQLCAIMGGSIGVE 610 Query: 796 STPAKGTLIEI 806 S P +G+ Sbjct: 611 SEPGRGSRFWF 621 >gi|298247503|ref|ZP_06971308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297550162|gb|EFH84028.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 635 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 96/636 (15%), Positives = 207/636 (32%), Gaps = 36/636 (5%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKV 240 K ++ F L E + + Sbjct: 21 HGDEQKRAEQQLKASEENFRVLAETVPQLVWTAQPDGLHEYTNQRWRDYTGFAPERVQRW 80 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 L + + L + E E + +++++ + Sbjct: 81 DHLQFLHPDDRARNQALWRHALDTGEMFECEGRLRNGQTGVYRWVLTRAMPVRDDTGQIV 140 Query: 301 EYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355 ++ E + P +V G Y N + T Sbjct: 141 KWFGTCTDIEKQKRAEQQLKESRESLRVLAETVPQQVWVTRSDGQHDYMNQRWRDYTGLT 200 Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 + + + L T RL Q Sbjct: 201 H--EHIQSDRWAHLQFIHPDDRAGNQALWQHALDTGTMYEHEERLRNGQ--NGEYRWFLT 256 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 ++ + + G + D + + + + ++ ++ GI++I E I+ Sbjct: 257 RAMPMRDEGGQIVKWFGTSTDIEDQKRAEEALRQSQERASVLMNSSMIGISVIEGE-QIV 315 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N ++ GY ED+ + P + L +Q++ K+ Sbjct: 316 DANDTFLRMTGYTREDLRAGRM-NVMRMTLPEHLACTRQAHQELTTQQSVTYEKEYVCKD 374 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L + + L +++ D S K+ + + K DF++ +H Sbjct: 375 GSRLPVLVCGVVLKQHPLQAISFVLDNSARKELEQR--------------KDDFISMANH 420 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E++TPLTA+ + + +R P ++ + ++ +LLD+S++++G Sbjct: 421 ELKTPLTAVKLQIQ-LVRKRLEKHSQPEAATALARVEGPIKQLERLITELLDVSRMQAGS 479 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + E V LDE + E + + IL+ S ++ + D + Q+ N++SN Sbjct: 480 LEYRRERVDLDELLREVTATIHHLHPSHTILVCGSVRASL---VGDRDRLGQVFTNLISN 536 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI ++P + + + + + V + VRD G+G+ + +K + F ++ + +Q G Sbjct: 537 AIKYSPDAEAVEVDLSPSEDA-VTVHVRDHGLGIPREQRDKIFERFYRVTDLRQRAIPGL 595 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G+GL + +V + G + ST KG+ + PL Sbjct: 596 GMGLYIVAEIVKHHEGTITVDSTVGKGSTFTVTLPL 631 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 36/422 (8%), Positives = 97/422 (22%), Gaps = 29/422 (6%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110 ++ +++ + SE F + W G + ++ G Sbjct: 16 KAPIMHGDEQKRAEQQLKASEENFRVLAETVP-QLVWTAQPDGLHEYTNQRWRDYTGFAP 74 Query: 111 FKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 ++ N + L + + T +Y + A+P+ Sbjct: 75 ERVQRWDHLQFLHPDDRARNQALWRHALDTGEMFECEG-RLRNGQTGVYRWVLTRAMPVR 133 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 + + FG K + L E V + Sbjct: 134 DDTGQIV--KWFGTCTDIEKQKRAEQQLKESRESLRVLAETVPQQVWVTRSDGQHDYMNQ 191 Query: 230 PPPHLR-------MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 ++ + L + + L + E+ + N Sbjct: 192 RWRDYTGLTHEHIQSDRWAHLQFIHPDDRAGNQALWQHALDTGTMYEHEERLRNGQNGEY 251 Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSH 338 +++ + ++ + + ++ I V Sbjct: 252 RWFLTRAMPMRDEGGQIVKWFGTSTDIEDQKRAEEALRQSQERASVLMNSSMIGISVIEG 311 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 + AN +FL +T Y +D+ + P+ L + + Sbjct: 312 EQIVDANDTFLRMTGYTR-EDLRAGRMNVMRMTLPEHLACTRQAHQELTTQQ----SVTY 366 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + + + K + ++ ++++E S+ Sbjct: 367 EKEYVCKDGSRLPVLVCGVVLKQ----HPLQAISFVLDNS----ARKELEQRKDDFISMA 418 Query: 459 EA 460 Sbjct: 419 NH 420 >gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity [Desulfovibrio vulgaris DP4] Length = 1535 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 118/649 (18%), Positives = 219/649 (33%), Gaps = 29/649 (4%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 VN + L + ++ L + + E + + + Sbjct: 749 TVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGR 808 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 +++ + + S D + +Q +++ + + L Sbjct: 809 PLQQIASCLVEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLL 868 Query: 305 HRNHPSL---SAYFDEGENLTPETVDKCPIPFF----VYSHG-NLFYANPSFLLLTKYKS 356 + + + E P F + + Y + L Sbjct: 869 TFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGLSQ 928 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + L L P + + + +D + + + Sbjct: 929 EEIKADPHALVALF-GPDVVPHILAG---ISATDGEGTPVDVEIPLHCTGGTKWVHVQAT 984 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 E G+ + + R + +M + IL+ I + G Sbjct: 985 STPARGGGTE---WYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGACDW 1041 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N G +E + + + + + L+Q E + Sbjct: 1042 FNTTWLDFTGRTMEQEYGYGWAEGVHPDDYDRCVSIYQKAFA--LQQAFEMNYRLKRHDG 1099 Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + L K LP + +DI++ + A K AE+ + KS+FLA V Sbjct: 1100 QFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANV 1159 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTPL +G + +P +Y RSG ++ +++D+LD+S+IE+ Sbjct: 1160 SHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEA 1215 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711 GK+ + P + E V E S L A K I + T+ A P + D ++Q N+ Sbjct: 1216 GKLVIEAIPCDIKELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNL 1275 Query: 712 LSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 + NA+ FT GG ++ ST + ++L VRDTG G+ +E +PF Q+ S Sbjct: 1276 VGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYT 1335 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 R G GLGL + +++ G + S P GT + P+ T P Sbjct: 1336 RRHSGLGLGLGIVCRLMELFGGSIEVESAPNMGTAMHFAIPVGKTRRPQ 1384 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 52/226 (23%), Gaps = 11/226 (4%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLK 138 W D G + G + G + D I Sbjct: 1024 DHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAEGVHPDDYDRCVSIYQKAFA 1083 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 Q + L +G + + P+ + FSGF G+ + + Sbjct: 1084 LQQAFEMNYRLKRHDG--QFRWLVDCGKPLPDLDGTFSGFIGY--CYDITDAVNALESMC 1139 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 K+ + K + + P + + + + T Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRT------PLNGALGMLQLLELSSLSPEQRQYVTTA 1193 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + L + D I + + ++ E F S Sbjct: 1194 IRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIKELVDEVFSTFS 1239 >gi|323528804|ref|YP_004230956.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385806|gb|ADX57896.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 943 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 127/737 (17%), Positives = 266/737 (36%), Gaps = 63/737 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + +S+ + + + ++ + V L +D I L+ + + + Sbjct: 102 IDRESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTRTSVEARRV 161 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 W +G I++ P + L D+ H+ Sbjct: 162 KWVHDG--QVSWINMTVRPFRD------------------AVANAEFLLIVFDEVAGHMT 201 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + ++ ++ + P +++ ++ E A + +T L S E Sbjct: 202 DEEQAEATGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEEL 250 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E+ + + + K+ ++ + + R + A D + + Sbjct: 251 QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 308 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 FV + P+ + D ++ L P L+D+ L Sbjct: 309 --ATVFVDKEIRVKRFTPNATAIFNLIDSDIGRSLFHITHTLRYPTLADDVRQSFQSLRL 366 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 ++R IQ M +P+ A+ + D + Sbjct: 367 TERE----------IQSEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHEAEEAAR 414 Query: 449 IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +L + ++T D I I + G I+S N ++FGY +++ + + E N Sbjct: 415 AGERRLRLVAQSTKDYAIVIQDSAGTIVSWNAGAERIFGYSEGEVVGQNIELIYEHNDRQ 474 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565 + ++ + TK+ + + ++ + + + ++ + D++ K Sbjct: 475 ALLPAQERDIAA-KEGRADDERWHRTKDGRRIFCSGVVTPIVDTSFNGFAKILRDLTARK 533 Query: 566 QEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q ++ A ++ A + K +F+A +SHE++ PL I +E++ Sbjct: 534 QREDASREALAREQAAREQALSANQLKDEFIAVLSHELKHPLNLIGVKAEMLPRLPEVRH 593 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P + A I + I++DLLD+S+I++GK+ L V L +++ + Sbjct: 594 L-PAVWDAAASIRHAVRSQAQIIDDLLDLSRIQTGKLALEVSRVDLAALIADIADTCEED 652 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A+ + + ++ A+ LAD +QI N+LSNA+ FT SGG + + + + Sbjct: 653 AHARGVALQVEVADEPAITLADPVRCEQIFWNLLSNAMKFTDSGGHVEVRLS-RDGRMLR 711 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797 L V D+G G+ L F Q P + G G+GL L + +V+ + G S Sbjct: 712 LEVTDSGQGIEPATLPYIFDMFRQTPRGRSR--GGLGIGLALVRQLVEMHGGHVKAESEG 769 Query: 798 PAKGTLIEIIFPLYDTS 814 P GT + + P + Sbjct: 770 PGHGTRMTVWLPAMEDE 786 >gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas testosteroni CNB-2] Length = 841 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 106/511 (20%), Positives = 197/511 (38%), Gaps = 20/511 (3%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362 +HR A E + F G L + N + +LT S + Sbjct: 333 AHREMDRAQAKLARSEQELAVLMRSVQELIFRTDKDGRLTFVNARWEMLTGQPSKQALG- 391 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L+ V+L R + + RE + +P Sbjct: 392 -----LRLEKIVEPQFRPQVKVLLDAKSRQSLRTCQAQFALPNEREILCDIAVVPLT--- 443 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + E + G + +++++ ++ + E+T + + + I N+A Sbjct: 444 KHGEIIGFAGSAVDVTARWKAQQELQTQLAFQHLLFESTPLPLLVTDEAHRITIANKAWE 503 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 + G ++ + +L+ R L+ + + ++ Sbjct: 504 EFSGSNSLQVMGSNLQDICASEDATKQLRTNDIVLASGQRTVLDTKVI--HADGTYRDMQ 561 Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 I + D++E++ + A+ AE+ KS+F+A +SHE+RT Sbjct: 562 ITKTAIKDVRGRPTGVLSIFVDVTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRT 621 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PL +IIGFSE+ + P+ E I +G +L +VNDLLD++K+ES ++H Sbjct: 622 PLQSIIGFSEL---GQLRSRATPKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIH 678 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E V L + ++ ++K+I +R + AD +Q+ N+L+NAI F Sbjct: 679 TEKVDLRGLIRPVARELEPLLHQKQIDLRLRLEDAPLIAKADPVRFQQVIRNMLANAIKF 738 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + G+I + + + D G G+ EL+K +PF Q + + GTGLGL Sbjct: 739 SLPHGRIDVEGHFDGQGNICVDFLDQGPGVPTQELDKIFQPFVQ-SSKTKDGSGGTGLGL 797 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + ++DA G + P G + I P Sbjct: 798 AICRKIIDAMDGTITAANRPDGGAVFRITLP 828 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 70/247 (28%), Gaps = 9/247 (3%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + D G L ++ G + + +G+RL + + + D K + + Sbjct: 361 LIFRTDKDGRLTFVNARWEMLTGQPSKQALGLRLEKIVEPQFRPQVKVLLDA-KSRQSLR 419 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + + + D+A +P+ +++ E GF G + + + Sbjct: 420 TCQAQFALPNERE-ILCDIAVVPL-TKHGEIIGFAGSAV--DVTARWKAQQELQTQLAFQ 475 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLKTEKYP 260 L E V E + I N + S+L + A +D + Sbjct: 476 HLLFESTPLPLLVTDEAHRITIANKAWEEFSGSNSLQVMGSNLQDICASEDATKQLRTND 535 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 ++ + + + +++ LS + + Sbjct: 536 IVLASGQRTVLDTKVIHADGTYRDMQITKTAIKDVRGRPTGVLSIFVDVTEFRIAELATR 595 Query: 321 LTPETVD 327 + + Sbjct: 596 EARDAAE 602 >gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048] Length = 591 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 27/365 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E QL SIL + +DG+ +N+EG ++ N E+ + Sbjct: 249 ALQQEKEQLASILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEEKEVELIKKL----- 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 PS + ++ + +Q +E + + L + + D++E + Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I + +VN+LLD++++ESG + LH V + V + Q A +K + Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I + D ++Q+ N++ NAI T +GG + + ++ + V+D+G Sbjct: 464 LTVDFQSPIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSG-LTFEVQDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+ ++ F + ++ + GTGLGL +AK +V + GK + S +GT Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTF 582 Query: 805 EIIFP 809 + P Sbjct: 583 SVYLP 587 >gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33] Length = 655 Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats. Identities = 90/428 (21%), Positives = 171/428 (39%), Gaps = 30/428 (7%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 R + L Q + S+A++ + ++ E + + Sbjct: 241 RQWVDFELELMQ-QLADQISIALSQAQLLGRLEEVVAARTAELQEEINVRMQAEAALRQS 299 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 QL I A IA ++ + N+A G + I ++ M Sbjct: 300 EEQLRLITNALPVLIAYVDEQQQYRFNNQAYQDWLGQSPQKIYGSHLRQVWGEDCYQRME 359 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566 Y+ LS Q + ++ ++ + + DIS+ K Sbjct: 360 VYVKTALSG---QAVNYENDIVLRDGSWRAVDVTYIPHLDDENMVKGFFALSSDISDRKA 416 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + K +F++ +SHE+RTPLT++ +++ R G L + Sbjct: 417 IE--------------RMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQ-QM 461 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 D S ++ +VN++LD+ +IESGK+ + + + + +A +Q A ++ + + Sbjct: 462 LGIADDSTERLVRLVNNVLDLQRIESGKVIMECQACNAANLMIQAAEAMQAMAQQQEVTL 521 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRV 741 + AD + Q N+LSNAI F+ GG + ++ N +EV+ RV Sbjct: 522 VKQ--PQDISVWADADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRV 579 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD G G+ +LE+ + F Q+ +S + GTGLGL + + +++ + G+ + STP G Sbjct: 580 RDEGQGIPADQLERIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCG 639 Query: 802 TLIEIIFP 809 + P Sbjct: 640 STFAFTLP 647 >gi|284035961|ref|YP_003385891.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] gi|283815254|gb|ADB37092.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale DSM 74] Length = 1406 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 131/812 (16%), Positives = 251/812 (30%), Gaps = 63/812 (7%) Query: 47 DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP--RTVRFTWNIDAHGYLKEISEELPK 104 ++ EQ ++ E + + F DA G ++ ++ L Sbjct: 616 ETEEQLRQSNAELEKRVAARTGEIQQLFAMQQAVFKHAGLAITATDAQGVIQLVNPALES 675 Query: 105 TIGNYAFKMIG----MRLCD----------VSDILHIDP--NNHIGDLLKRQNTWYGKTT 148 G A ++IG L D ++ L D H+ + +++ + + Sbjct: 676 LTGYTADELIGKVTPRALRDPVFHQNLLQKLAPDLVDDGTGEEHVIEYIRKNDFLRRENV 735 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHL 207 L +G + V ++ L Y N GF IV L + + Sbjct: 736 LLTKQGQRIPVLSTVSGL--YDDNNVLIGF--VDIVADISYLKTIEHKLMQANQRSRLAT 791 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLK-------- 255 K G +I ++ + E H DD+ Sbjct: 792 MAGKLGVWEWNLLTNEIMMDENFLVLFGLPENASIKRIEDLEQIVHPDDLAYFKQNVQNI 851 Query: 256 -TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + P P + H + + + G Sbjct: 852 IESQKPFDVEFRVFFPSTKTTHYLKADGLIVQNEDGINNRLIGVIR---DRTKKRQADQA 908 Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E VD F + + G L Y NP + +T + + + L + Sbjct: 909 LKISEKRYRSLVDHLKDIVFQIDTSGCLTYLNPVWQKITGFSLEETL-GKPFLDFVFPDD 967 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + ++ + A + + N+ E G Sbjct: 968 RERNQYLCDQLICRQK-----AICQHVVRYIHKDGGYRWIDVFAQLTVNELDEVTGITGT 1022 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDI 492 + + + + + + I E + I + E + N A K G E + Sbjct: 1023 FTDITERKKAEDALLESEQRFRDIAENVDEIFWIRDLLEPKFIYINPAYEKFTGQLAETL 1082 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 P + + T + K+ L L + + ++ Sbjct: 1083 YENPLVFLNFILEEDRSKVLANFVDEANQDSTFQF--RARHKDGSLRHLDVRLFRVVNEE 1140 Query: 553 CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+ +++ L + ++ KS F++ SHE RTPL AI E Sbjct: 1141 GVLIRRIGMATDITTAIEKELILEESLTKERTLNALKSQFISTASHEFRTPLAAINSSVE 1200 Query: 609 VIKNQ-RFGPLGNPRYI---EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664 ++K+ G P ++ I + + D++ D L ISKI+ G++ ++ E L Sbjct: 1201 LVKHYVNVGSADTPMTKVINQHIEKICQKVFFLNDLITDTLTISKIDEGRITVNLELTDL 1260 Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724 E + + R + + N + D + + I N+LSNA F+ + Sbjct: 1261 IELYENTVKHYFSDREDNRF-VEFEYIGNPVTVNLDRKLTEHILTNLLSNAFKFSNKNPR 1319 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + IS V++ +RD G+G+ ++ F + N +GTGLGL + + Sbjct: 1320 LTISFCTEE---VMMTIRDEGIGIPEKDIANLFGKFFRASNVTG--FQGTGLGLAICQEY 1374 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + G+ S GT ++ FP P Sbjct: 1375 ITLQNGRITCESREGVGTSFKVYFPFSANEQP 1406 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 62/179 (34%), Gaps = 15/179 (8%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINR---EG 472 + + + E+V+ ++ ++ + L +I++ T +A +G Sbjct: 463 HILIAREVADQLSIVLLQEEVNRQLGEQAGKLHENNQLLQAIIDHTPAVLAFWEPVRIDG 522 Query: 473 IILST-----NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 I+ N S + GY E+++ + + E+ Q + Sbjct: 523 RIVDFKYLLSNPVNSAVTGYSHEELMHSTLVTLFPFTRDNGIFSRAVEVAETGNSQQFQL 582 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 T + L + ++ LT+ DIS K+ + +L + EK + ++ Sbjct: 583 KYRLKTGD---LWGEYSLVRV--GGNVLLTIKDISHLKETEEQLRQSNAELEKRVAART 636 >gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199] gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199] Length = 727 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 134/593 (22%), Positives = 239/593 (40%), Gaps = 31/593 (5%) Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286 + P R+ + ++ ++L +S + F ++ Sbjct: 137 WRDTAPDERVLRRTMAVVLVIWAAQELLSAT-IGWHSSTDPLW-----FTAVHGYGVALA 190 Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345 + + + A + + F+ G Y + Sbjct: 191 LLLIVAALRRRHAQALEAIDQAQRARADVEHASQRLSDFASVSSDWFWEQDAGLRFTYLS 250 Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRSDRTCIAASARLHTIQ 404 PS + ++ S+ G + +SD A L R + R + I Sbjct: 251 PS---VWQHSSLTPENHYGKTRSETQPRGVSDEEWAAHEATLQRREPFK---DFRFYRIG 304 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + ++ ++ G+ + D ++++ QL L+A S+G Sbjct: 305 ADGRR-RCLSISGVPVFDEQGLFQGYRGVGKDLTDLITAEQRVRATNTQLAQALDARSEG 363 Query: 465 IAIINREGIILSTNRAVSKLFG---------YPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +A +R+ ++ N+A G ED +R + +L E Sbjct: 364 LAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAVGREDAWLQE 423 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 L + + L I ++ P LT DISE K+ ++ L A Sbjct: 424 RLEVRRNLPYTVEIFRGDR-----WLLIREQRTPD-GGTLLTATDISELKRREDALVKAV 477 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + A+ + K FLA +SHE+RTPL AIIGF+E+IK+ + + EYA YI SG Sbjct: 478 EQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQIAS-NSDVQGEYAGYIHESGA 536 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 +L ++NDLLD+S+IE+G++ L +P L + E +++ A + + + + Sbjct: 537 HLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAEADGLRLAMATVDPGL 596 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 I D R+ KQI +N+LSNA+ FT SGG + ++ + + + VRDTG+G+ + + Sbjct: 597 GIHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMVVRDTGIGVEANRVVE 656 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF Q+ N R GTGLGL + K +V+A+ G ST +G+ + I Sbjct: 657 LFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHEGSTVTITL 709 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 21/249 (8%), Positives = 63/249 (25%), Gaps = 6/249 (2%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYG 145 W DA +S + + G + D + L+R+ + Sbjct: 238 WEQDAGLRFTYLSPSVWQHSSLTPENHYGKTRSETQPRGVSDEEWAAHEATLQRREPFKD 297 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + I + ++ +P++ F G+RG G + + + + Sbjct: 298 F-RFYRIGADGRRRCLSISGVPVFDEQGLFQGYRGVG--KDLTDLITAEQRVRATNTQLA 354 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + + + K+ + + E + + Sbjct: 355 QALDARSEGLAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAV 414 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDEGENLTP 323 ++ + N + F + + + + E+ Sbjct: 415 GREDAWLQERLEVRRNLPYTVEIFRGDRWLLIREQRTPDGGTLLTATDISELKRREDALV 474 Query: 324 ETVDKCPIP 332 + V++ + Sbjct: 475 KAVEQAQLA 483 >gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM 9485] Length = 944 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 96/426 (22%), Positives = 190/426 (44%), Gaps = 31/426 (7%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATS 462 + + IP+ ++ I + + ++ +IE+ + +++E T+ Sbjct: 288 GWQAGVVQLIPWPGSSFNERQWQWLRILVRQIGIAVEHARLFEQLQIELDRAQAVVETTN 347 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----YLTEIL 517 DGI +++R+ ++ NR FG DI K + L + N +L ++L Sbjct: 348 DGIVVLDRQRRVVIINRRACYFFGITEADIKEKSYDDLLLVFSRVFANSVRLGFWLGQLL 407 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576 + + E+ + K +L + + L D++ ++ + Sbjct: 408 GSETDRGWEEFQVVYPKSRRLHCFSAPVINRREQYLGRILIFRDVTREREIE-------- 459 Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR------FGPLGNPRYIEYANYI 630 K +F++ VSHE+RTPL++I G +++ G P+ Sbjct: 460 ------RLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTMLQIS 513 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + ++ +VND+LD++KIE GK+ L +PVS A+ + +A + + I Sbjct: 514 LNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTIALDV 573 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 N+P + AD + Q+ +N+LSNAI F+ G ++++S + ++ V VRD G G+ + Sbjct: 574 PPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETS-VVRFSVRDWGPGIPH 632 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + + F Q+ + GTGLGL ++K +V+ + GK ++ S P +G++ PL Sbjct: 633 TDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFTLPL 692 Query: 811 YDTSHP 816 P Sbjct: 693 AKVQPP 698 >gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044] gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 897 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 100/501 (19%), Positives = 173/501 (34%), Gaps = 35/501 (6%) Query: 326 VDKCPIPFFVYSH-GNLFYANPS--------FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 ++ P +Y L N L S++ + + P Sbjct: 9 LNLLPSAVMIYDERERLQAWNDKVALFYPTIAPWLAVGASLESLAEKFIDAGYNIDPGRQ 68 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + R C ++ + + + + + Sbjct: 69 QTLREAIIRNCRQTNHC--------EVRQSGNRRIYVQHQRLADG-------GIVSLHTD 113 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495 + +R E+ GI G L N + + G Sbjct: 114 ITELDEARRSRHQLHDDFLFTAESIQIGIWDWQVSGDSLQVNDTLLAMVGQSRAQWRFPL 173 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPF 550 F + L + E + + + + Sbjct: 174 RFMLNLVHEDDRATLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQ 233 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + T+ DI+ K + A K A + + KS FLA +SHEIRTP+ I+G +++ Sbjct: 234 AERVIGTLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLC 293 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + EY + + S +L I+ND+LD S+IESGKM + EP+ + V Sbjct: 294 LDTPLTA----EQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDVEPLEIRPFVQS 349 Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 I A+EK I + + +P +L D ++QI N+L NA+ FT G ++ Sbjct: 350 LIRPHMPAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIA 409 Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 + R+RDTG+G+ + + + F Q +S R GTGLGL ++ +V Sbjct: 410 PAEDDNRWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMG 469 Query: 790 GKFYIFSTPAKGTLIEIIFPL 810 G+ + S P G+ PL Sbjct: 470 GELTVESQPGAGSEFAFTLPL 490 >gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 1187 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 124/754 (16%), Positives = 260/754 (34%), Gaps = 54/754 (7%) Query: 75 VFDPIPRTVRFTWNI-DAHGYLK-EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F+ V F++ + D L I+ L + +++G L D Sbjct: 217 KFESRLPPVGFSFAVRDDERRLLALINRALDSIAPSTGREVLGR-WTM---GLGADVEGQ 272 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRV 189 L + W L T V P Y N + G + ++R+ Sbjct: 273 RIRLTSAERGW----LLKHPSVTIATVQH-----PPYIYKDNNGHWVGLNADVLSRISRM 323 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249 + + + L + ++ G + + ++ L + + Sbjct: 324 -TGLQFVHQELPSTQQAIDVLRAGQFDMNTTLAENTERRR---FLDFTYSFGGNSWMFVV 379 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + D L+ + +LP + ++++ + + Sbjct: 380 RSDQSSHISLDSLSGKVLALPARHAL-----EDMIRREHPTIQLRLVDTYDQARALVESG 434 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + A + +++ G L A S I+ L + Sbjct: 435 AADATIQNE------------VGAYLFPSGRLKVA-RSVEGQWSPDRFSVIKTQPELLGI 481 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L+ A + R + + W R + Sbjct: 482 LNKALEEFPVAELRSIRMRWLGSALP-----QPSLWGRIPQWVFWVVSLALLAGLVSLAW 536 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + ++ + + +R++ ++ ++L+ + I + + +G ++S NR+ + G Sbjct: 537 SSRLKVQIRQRQKAQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISF 596 Query: 490 EDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 E + + T + + M+ +L ++ K + + Sbjct: 597 EQMNGRRLTDVNLIPRALAEQMHTDYLNLLKDHQPVFSDRTLELPGKRMDVWQWTVPFFA 656 Query: 548 LPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 DI+E KQ + +L +A ++A + + KS FLA +SHEIRTP+ AIIG Sbjct: 657 ADGQLQGLLGGWIDITERKQLEQQLQNAVRMAAQANEAKSAFLASMSHEIRTPMGAIIGL 716 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E + RS ++ ++ + LD+++IE+G + L L + Sbjct: 717 LE--LEREHTLRRGETPSHGLQVAHRSATELVALIGESLDLARIEAGSLQLSLAITPLHD 774 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725 I L A EK + +R F+ D ++Q+ N+L NA+ FT G + Sbjct: 775 LFDGVIELFSAQAREKSVELRMEFSAQARGDYWLDPMRLRQVLHNVLGNALKFTRQGAVV 834 Query: 726 I---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + +++ + + V + ++D+G G+ + +PF Q + G+GLGL + + Sbjct: 835 VKVDVTSESSGSTRVRISIQDSGEGIEPERQQHVFQPFTQASDDTAAHYGGSGLGLSITR 894 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 +V+ G + S P +GTL+ + PL + P Sbjct: 895 QLVELMKGDISLHSEPGQGTLVTVDLPLTRLNEP 928 >gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC 11741] gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC 11741] gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713] Length = 627 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 166/399 (41%), Gaps = 36/399 (9%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 E +++ E E +L S+L SDG+ +R G I N Sbjct: 240 GNDELGQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMA 299 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++L K L+ + L + + L + EK + + Sbjct: 300 MNYLDISEGEVLGKSILDILDIRNQYTLRDLLEKQDEVVLDMSGEKDLILNA------YF 353 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +I ++ F S +HD++E ++ + F++ VSHE+RTPLT Sbjct: 354 SVIQRESGFISGIVCVLHDVTEQQKI--------------DRERKQFVSNVSHELRTPLT 399 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++ + E + + G + + E+ + ++ ++NDLL +S+++SG + L E Sbjct: 400 SMRSYIEALND---GAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLE 456 Query: 661 PVSLDEAVSEAISLVQLYANEKRI----------LIRTSFANNIPRILADLRSVKQIALN 710 V+++ V+ + + + +I I+ F + D Q+ N Sbjct: 457 LVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVELDTDKFIQVVDN 516 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I++NAI ++P GG I ++ VIL + D G+G+ +L F ++ ++ Sbjct: 517 IMNNAIKYSPDGGVITCRL-LETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRA 575 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++K +++ + G+ ++ S KG+ I P Sbjct: 576 QGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614 >gi|298247019|ref|ZP_06970824.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549678|gb|EFH83544.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 648 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 90/622 (14%), Positives = 200/622 (32%), Gaps = 45/622 (7%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + + + L + + Sbjct: 44 AAIDALPQCVWLIRPDGSVAYTNKRWRDYTGTSTEQEQGDGWLQYTHPDDRQRVLLVWQN 103 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + E E + +++ Y+ ++ Sbjct: 104 AVQTGEPYEAELRLRQGTTGAYRWFLLQATSHKDSQGTILNYVGTCADIEGQKRAEQQLK 163 Query: 321 LTPE----TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E + P + S L Y N + T + G + P Sbjct: 164 ESRENWRVLAETVPQLVWTTSSDGLVEYWNRQWYDYTGSSPEQAL---GDGWSQFLHPD- 219 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 L + + + + + G Sbjct: 220 -----EYQHTLMVWHQALETGEPYERLKEGQTGGYRWFLVRAMPVRDDTRQIVKWFGTCT 274 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + D + + + + ++ ++ ++ GI + + I+ N ++ GY ED+ ++ Sbjct: 275 DIDDQKRTEEALRLSQERVNLLMNSSIIGIFLA-EDDAIVDANATFLQMTGYRREDLQQR 333 Query: 496 PFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551 S + ++++ E + K+ L + + Sbjct: 334 NVRWATMTRPPAASFSHQVYQDVVAQHCTTPFETELVC--KDGSHLPVLLGGVAFHDQVL 391 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 + D S + + K FL SHE++TPL ++ ++ + Sbjct: 392 QGVGFVL-DNSARQ--------------ELDQRKDAFLGMASHELKTPLASLKLQTQ-LL 435 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ G ++ N + +V++LLD+S+I++GK+ E V LD + E Sbjct: 436 CKKLGKQDLSNVEVVCARMEGQLNAITRLVDELLDLSRIQAGKLEYAHEMVDLDAMLKEV 495 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 + ++Q I+++ + ++ D + Q+ LN+LSNAI + P QI ++ T Sbjct: 496 MDVLQHIQTTHTIVVQHAAPP--VFVVGDRDRLAQVFLNVLSNAIKYAPDAPQIEVTLTT 553 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 ++ V + +RD G+G+ + + F + QQ G G+GL + +V + G Sbjct: 554 SAEA-VTISIRDQGIGIPRELQGRIFERFYRAVPLQQRAFPGLGMGLYIVSEIVKHHGGT 612 Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813 + S KG+ I FPL + Sbjct: 613 IRVESERGKGSTFHITFPLAAS 634 Score = 103 bits (258), Expect = 9e-20, Method: Composition-based stats. Identities = 33/383 (8%), Positives = 86/383 (22%), Gaps = 14/383 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144 W I G + ++ G + G + + ++ + Sbjct: 53 VWLIRPDGSVAYTNKRWRDYTGTSTEQEQGDGWLQYTHPDDRQRVLLVWQNAVQTGEPYE 112 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + T Y L A + G K + + Sbjct: 113 AE-LRLRQGTTGAYRWFLLQATSHKDSQGTILNY--VGTCADIEGQKRAEQQLKESRENW 169 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E + + D + Sbjct: 170 RVLAETVPQLVWTTSSDGLVEYWNRQWYDYTGSSPEQALGDGWSQFLHPDEYQHTLMVWH 229 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + E+ P + +++++++ ++ +E L+ Sbjct: 230 QALETGEPYERLKEGQTGGYRWFLVRAMPVRDDTRQIVKWFGTCTDIDDQKRTEEALRLS 289 Query: 323 PETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E V+ I F+ + AN +FL +T Y+ +D++ + P + Sbjct: 290 QERVNLLMNSSIIGIFLAEDDAIVDANATFLQMTGYRR-EDLQQRNVRWATMTRPPAASF 348 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + L + + + + Sbjct: 349 SHQVYQDVVAQH-CTTPFETEL--VCKDGSHLPVLLGGVAFHDQVLQGVGFVLDNSARQE 405 Query: 439 DTRINKRKMEIEVMQLCSILEAT 461 + + + +L + L + Sbjct: 406 LDQRKDAFLGMASHELKTPLASL 428 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 7/143 (4%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + + ++A + +I +G + TN+ G E + + + + Sbjct: 40 EEWHAAIDALPQCVWLIRPDGSVAYTNKRWRDYTGTSTEQEQGDGWLQYTHPDDRQRVLL 99 Query: 512 YLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566 + E + S Y T DI K+ Sbjct: 100 VWQNAVQTGEP--YEAELRLRQGTTGAYRWFLLQATSHKDSQGTILNYVGTCADIEGQKR 157 Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589 + +L +++ + + Sbjct: 158 AEQQLKESRENWRVLAETVPQLV 180 >gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 951 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 174/373 (46%), Gaps = 14/373 (3%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L+ + I ++ + N A ++ FG D+ K + NT + ++ E+ Sbjct: 197 LLDNAASQIWALSNVTSYATVNEAHAEFFGKKKSDLEYKDLYDIFDINTANKLSENNWEL 256 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574 D E E++LL ++ K + T DI+E + + +L A Sbjct: 257 FRNDEPAEKEIKIKNWKGEDRLLQVKSKPIKDESGNIKYLVCTAQDITEQRIAEAELYKA 316 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K AE + KS FLA +SHEIRTP+ I GF E++++ E+ + Sbjct: 317 KVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSL----EQREFVREAKSAS 372 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +++L+I+ND+LD SKIE+ K+ L +L + +A+SL EK I + T I Sbjct: 373 DILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTLEKGIQLYTIIDPTI 432 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEV---ILRVRDTGVGMT 749 P ++ D +KQI N+LSN + FT +G +I I + E+ VRDTG+G++ Sbjct: 433 PDEVIGDPSRLKQILNNLLSNGVKFTDAG-EIAIKVDYFEEENEIALLTFEVRDTGIGIS 491 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--II 807 +++K K F Q S + GTGLGL + + +V+ G+ + S KG+ + Sbjct: 492 GKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEITVDSVLDKGSTFRFCVR 551 Query: 808 FPLYDTSHPHDCI 820 + + H I Sbjct: 552 LKISKRASEHISI 564 >gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5] Length = 601 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 10/379 (2%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 +KR + +E + + SD IA G + + A L G P +LR Sbjct: 193 HTSKRLLTLEEGRYRLLARHMSDVIARHRANGDVNFISPAAEALLGVPGPLLLRHGLFDR 252 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSS------ 552 + L++ ++E + + + + + L + Sbjct: 253 VHVADRPRYLTALSDAARGGEECSVEFRVRRDSAVHGGEFIWVEMRCRPLEPTQDKASGA 312 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 M D++E K ++ L A++ AE+ + KS FLA +SHE+RTPL AIIGFSE++ Sbjct: 313 CEVVSVMRDVTERKAQEEALEIARREAEEAGASKSRFLATMSHELRTPLNAIIGFSEMLT 372 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 ++ + R EYA I+ SG +L +VN +LD+SK+ESGK L EP + E ++ + Sbjct: 373 HEDEMKIDAARRHEYAGLINESGLHLLSVVNGILDMSKMESGKFELVAEPFAPRETLASS 432 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731 +L+ L A +K + + +++P++ D R+ KQI LN+LSNAI FT GG + +S Sbjct: 433 CNLMVLKARDKGVELVLRAPSDLPQMTGDARAFKQILLNLLSNAIKFTEEGGSVTVSAEV 492 Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791 + E+ LRV DTG+G+ +L K F Q S R EGTGLGL + K +V + G+ Sbjct: 493 -AGRELALRVTDTGIGIGKDDLAHLGKAFFQAGASYHGRREGTGLGLSIVKNLVALHGGE 551 Query: 792 FYIFSTPAKGTLIEIIFPL 810 + S GT + + P+ Sbjct: 552 MRVDSEIDCGTTVSVRLPI 570 >gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 666 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 106/515 (20%), Positives = 194/515 (37%), Gaps = 23/515 (4%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAG 364 FDE + E + + + S+ + N + L D E Sbjct: 3 EARRIFDEELSWGREAMAAASVGLWAISYDTRTERTAMFTNEAMRRLLGVPEGLDPEACA 62 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + + ++ + ++ Sbjct: 63 AFWLRHVDSRDLPLIRDSLAAFK----DDASMREIRYAYCHPGMGAMHVRCGGRRVSSAD 118 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILS-TNRAVS 482 + G + + + + +L G+ + R G N Sbjct: 119 DPVLRITGFHQDISELHAAHNALRESLSRLSLACRLGWLGVFELGRKNGRPEFSCNEVFY 178 Query: 483 KLFGYPVEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + FG + L ++ N E +L ++ +E + Sbjct: 179 EQFGLRESADAAERLVAVEKCILPEDRHRWRNLCRAEGWTLGFQEHVELRVSHPWRGLCW 238 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + + +HD+++ +Q + L AK+ AE ++ KS FLA +SHEIRT Sbjct: 239 FVVAYEVVGTQDEPRITGYVHDVTKQRQHECMLREAKESAEAANAAKSIFLANMSHEIRT 298 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ I+G + ++ N P + +Y I + +LDI+NDLLD SKIE+ M+L Sbjct: 299 PMNGIMGMAHLVLNTDLSP----QQRDYVEKIHSTCESLLDIINDLLDFSKIEANHMDLE 354 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717 P + ++L++ K ++ + +IP+ ++ D ++QI LN+ NAI Sbjct: 355 ALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPDIPQTLVGDALRLRQILLNLGGNAIK 414 Query: 718 FTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 F+ G ++ + H V L V D G+GM+ E E+ PF Q S R GT Sbjct: 415 FSERGVVRVDLQLLHREGNSVTLACLVSDEGIGMSEEEQERIFTPFSQADTSITRRFGGT 474 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL L + +V+ G+ ++ S P KG++ + P Sbjct: 475 GLGLALCRRLVELMGGRIHVQSAPGKGSVFRVELP 509 >gi|16329960|ref|NP_440688.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1652446|dbj|BAA17368.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1747498|gb|AAB39105.1| phytochrome/histidine kinase like [Synechocystis sp. PCC 6803] Length = 1371 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 112/817 (13%), Positives = 252/817 (30%), Gaps = 107/817 (13%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143 W + + G + E ++ G K++G + + + Q + Sbjct: 570 LVWRLSSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENVQRQWRQGIAAQEFF 629 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR--------- 194 + LW +G Y L LP+ R +G+ + Sbjct: 630 QLECRLWRSDG--QYRWHLLQVLPLEDRFGSINGW--LASSTDIDDLKEAEKALRNQAQQ 685 Query: 195 --------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTE 245 + K + L + Q + V + Sbjct: 686 EKLLSSISQRIRESLKLETILRTTVTEVRRTIHADRVLIHHIQEDGLGTTIAESVVNGQP 745 Query: 246 YYAHKDDV------------------LKTEKYPLLTSEES-------------------- 267 D ++ P + Sbjct: 746 SVMQMDLSPESFPPECYQRYLNGYIYASRDQLPDCAINCAVQCFTVAESQSRIVAPIVFD 805 Query: 268 -SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN-HPSLSAYFDEGENLTPET 325 SL H + ++ + +Q+ + + + L E + + Sbjct: 806 HSLWGLLIVHQCSSSRTWQTAEIQLMQSLGNQLAIAIQQSLLYERLQEELSERQRAEQKL 865 Query: 326 VD--KCPIPFFV---------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 ++ + F G + N + + Y + + I L + + Sbjct: 866 LEVNQLQKGIFDVANYMIISTDRRGIISTFNRTAEEILGYTAAELIGQQTPL--IFHDQE 923 Query: 375 LSDNNAIKPVMLYRSDRTCIAASA------------RLHTIQWNRENSLAMTFIPFEKAN 422 + A++ + + R T + L + + Sbjct: 924 EMASEAVQLSQQLQQTIRPNSIDMFAIPAIQWGVYEREWTYITKTGDRLPVYVSITALRD 983 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + G+ + ++++E E L +++ +++ I I + E + N+A Sbjct: 984 DQGKVDGLVGVITDL----RRQKQIERERQNLDFVVKNSTELIVITDLEQKVTFLNQAGQ 1039 Query: 483 KLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-L 539 L G + + + + + ++ E + + + Sbjct: 1040 SLIGLENPETAQTTYLSEHISPEYLNFWQMEIIPQVFRSGA---WEGEFSLQHYQTAVEI 1096 Query: 540 SLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + L + +HDI+ K + ++ A + ++ +S F++ SH Sbjct: 1097 PVTASVFLLQGVNGQHPANLVAIVHDITHIKNAEKRILAALEAEKELGELRSRFISTTSH 1156 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E RTPL AII S I + + L R ++ I+ S + ++++++D+L I++ E+ Sbjct: 1157 EFRTPL-AIISSSTGILKKYWPKLDGQRRGQHLERIEESVHHMVELLDDVLTINRAETKY 1215 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + +P+ L +Q +L + D + ++QI N+L N Sbjct: 1216 LPFEPQPLDLVSFCRGITDELQSSTEYHGLLFSYDGLGPGEIVAFDPKLLRQILTNLLGN 1275 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI ++PSG + + + V+D G+G+ ++ F + + GT Sbjct: 1276 AIKYSPSGQPVEFHLQRRGDVGI-FSVQDHGIGIGPEDIPNLFDSFYR--GTNVGSIPGT 1332 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 GLGLP+ K + + G + S +G+ E+ PL+ Sbjct: 1333 GLGLPIVKKCAELHGGMITVTSQLGQGSRFEVELPLW 1369 Score = 91.6 bits (226), Expect = 5e-16, Method: Composition-based stats. Identities = 47/376 (12%), Positives = 104/376 (27%), Gaps = 45/376 (11%) Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 P P + + L + L + + + + + + Sbjct: 365 PNPMVETDPRQDLLLPPRYFGLEELAALQAHEKKEFNFEFTDGGQSVHYFVVEISAFEID 424 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348 G+ Q + A E V+ + + + YANP Sbjct: 425 GSGQTSKILCLAQDVSHG-KRAEAALHTKEQQLQTLVNTIADGIVILDNHDKVIYANPMA 483 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 + + ++ GLS N + + S + I W E Sbjct: 484 CQMFGLSKEEFLQSQLGLS----------NRGQTEIGINVSPEEEGIGEIKAVPIHWQGE 533 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + +T + D + +K+ S+LEA + + + Sbjct: 534 DCRLVTVR-------------------DVTDRQRVLKKLRDSEQIHRSLLEALPNLVWRL 574 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + G + N+ FG IL + F+E + + ++ ++ + Sbjct: 575 SSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENVQRQWRQGIA--AQEFFQLE 632 Query: 529 TLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + + + + L + + + DI + K+ + L + Sbjct: 633 CRLWRSDGQYRWHLLQVLPLEDRFGSINGWLASSTDIDDLKEAEKALR------NQAQQE 686 Query: 585 KSDFLARVSHEIRTPL 600 K L+ +S IR L Sbjct: 687 K--LLSSISQRIRESL 700 Score = 80.8 bits (198), Expect = 8e-13, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 96/327 (29%), Gaps = 33/327 (10%) Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIP 332 L LQ + ++L + + + P Sbjct: 275 VGPQQWLATVQPDVLLEALQREVEMPRIVQHLEARIVWQQQQQQRNQHLIQKLLSRNPNL 334 Query: 333 FFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN--NAIKPVMLYR 388 ++Y + Y N LL I + L + L Sbjct: 335 IYLYDLVKNEIVYLNIPGSLLEGGSGGAPIPNPMVETDPRQDLLLPPRYFGLEELAALQA 394 Query: 389 SDRTCIAASARLHTIQWNRENSLA--MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ + S+ + I + + + + + + + Sbjct: 395 HEKKEFNFEFT------DGGQSVHYFVVEISAFEIDGSGQTSKILCLAQDVSHGKRAEAA 448 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + + QL +++ +DGI I++ ++ N ++FG E+ Sbjct: 449 LHTKEQQLQTLVNTIADGIVILDNHDKVIYANPMACQMFGLSKEE--------------- 493 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 +L L L R E S +EE + ++ + C +T+ D+++ ++ Sbjct: 494 -----FLQSQLGLSNRGQTEIGINVSPEEEGIGEIKAVPIHWQGEDCRLVTVRDVTDRQR 548 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVS 593 KL +++I + + R+S Sbjct: 549 VLKKLRDSEQIHRSLLEALPNLVWRLS 575 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 28/305 (9%), Positives = 75/305 (24%), Gaps = 49/305 (16%) Query: 24 DLSKKKIDNGFETEK--SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81 ++S +ID +T K ++ H ++ + Q+ + N + Sbjct: 417 EISAFEIDGSGQTSKILCLAQDVSHGKRAEAALHTKEQQLQTLVNTIADGIVI------- 469 Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 +D H + + + G + + +L L R Sbjct: 470 -------LDNHDKVIYANPMACQMFGLSKEEFLQSQLG----------------LSNRGQ 506 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 T G EG ++ A+PI+ + V + Sbjct: 507 TEIGINVSPEEEGIG-----EIKAVPIHWQGEDCRLV------TVRDVTDRQRVLKKLRD 555 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKT 256 ++ L E D++ R + + + + + + Sbjct: 556 SEQIHRSLLEALPNLVWRLSSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENV 615 Query: 257 EKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 ++ + + + + L++ +L+ Sbjct: 616 QRQWRQGIAAQEFFQLECRLWRSDGQYRWHLLQVLPLEDRFGSINGWLASSTDIDDLKEA 675 Query: 316 DEGEN 320 ++ Sbjct: 676 EKALR 680 >gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 648 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V A D E S+ + + ++ + Sbjct: 5 VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 59 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + A L V +V + + L Sbjct: 60 LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 119 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 A L + +S + + A + L +L Sbjct: 120 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAIALSGYLPVGALALDWPNAIVM 177 Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 E + + +M+ + +L A D + + G +L + Sbjct: 178 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 237 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536 + ++ G + + + ++++ + T+ Sbjct: 238 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 297 Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + ++ S D+SE ++ +L A+ AE+ K+ FL Sbjct: 298 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 357 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE+RTPL AIIGFS+V+ + L R EYA I +SG +LD+VN LLDIS+ Sbjct: 358 ATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 417 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I G + EPV ++ + L++L A+ I + ++ ++AD R+ +Q+ + Sbjct: 418 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAPVPASCALVADARACRQMLI 477 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FTP GG++ + + + V D G+G+T +L + PF Q+ Sbjct: 478 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 536 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + + + + G + S P KGT + + PL Sbjct: 537 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 577 Score = 41.6 bits (96), Expect = 0.58, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+G + E S + +G A ++ G L D I + Sbjct: 228 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 287 Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204 ++ + A +G G + R + Sbjct: 288 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 346 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263 E+K + + + + + SL+ + + + + L Sbjct: 347 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGIIAQSGRHLL 406 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315 ++L + + + + L + + S L+ P+ A Sbjct: 407 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAPVPASCALV 466 Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 + ++ F G + Sbjct: 467 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 499 >gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710b] gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 1710a] Length = 769 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl] gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl] Length = 1347 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 100/432 (23%), Positives = 190/432 (43%), Gaps = 26/432 (6%) Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEATS 462 + ++ + A E + + + + + ++ + I+ A Sbjct: 652 DEPPAVLCFYAGQPAAFDHDEIQLLDELVRDIIFGLLVSQQEAQLRTSEQRNHLIVSALP 711 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 D + + +G ++ A S + ++ + L+ + Sbjct: 712 DLVLRLRPDGQVVDVVAAESMVLPMAPTAMINSTLEQLFPAAIATQYRQALSAAFASGEL 771 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-------------- 568 QTL + KE IK + + D++ W+ + Sbjct: 772 QTLAYQLIVEAKEYFF---EARIKAALPAEEAIAIVRDVTAWRNAELALQVERDLLAQRV 828 Query: 569 ----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 +L A + + K +FLA +SHE+RTPL +I+ SE + + +GPL + Sbjct: 829 AERTAELHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPL-RDQQQ 887 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 + I+ SG +L ++ND+LD++KIE+ ++ L E V+ + +++LV+ A +K+I Sbjct: 888 KAIRAIEASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQI 947 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRD 743 + + R +AD R +KQI +N+LSNA+ FTP+GG + + T T+ + V D Sbjct: 948 HLSIQLDDPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSD 1007 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ +L + +PF Q+ + + EGTGLGL L + +V+ + GK + S P G+ Sbjct: 1008 TGIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVESMPGVGSR 1067 Query: 804 IEIIFPLYDTSH 815 + P +H Sbjct: 1068 FTVTLPYQPVTH 1079 >gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22] gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22] Length = 785 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 109/624 (17%), Positives = 224/624 (35%), Gaps = 40/624 (6%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + L + ++ + G V E+ + + ++ Y + Sbjct: 48 AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + +++ L + H + + + L + Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155 Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + +DK V G L YAN F+ G+ + D Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209 Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P + + R + A A ++E ++ + N+ Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487 + D + ++ + L IL + + + E L N+A + G Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325 Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P + E+L R +++ L T + +++ + Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385 Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + DI+ + + +L A+ AE+ KS FLA +SHEIRTPL AI+G Sbjct: 386 PMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++ Y+ I+++ +++L ++ND+LD+SKIE+G + P++L Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E ++ + E + + + I D + Q+ N L+NA FT +G +I Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + V+DTG+G+ +++ + F ++ + +GTGLGL + + ++ Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S KG+ P Sbjct: 615 EKIGGEIGVTSELGKGSTFYFTIP 638 >gi|91226808|ref|ZP_01261461.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01] gi|269965795|ref|ZP_06179891.1| Aerobic respiration control sensor protein ArcB [Vibrio alginolyticus 40B] gi|91188939|gb|EAS75223.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01] gi|269829593|gb|EEZ83831.1| Aerobic respiration control sensor protein ArcB [Vibrio alginolyticus 40B] Length = 784 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 176/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ + EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEDDFATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELAEP 516 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + + Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A] Length = 785 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 109/624 (17%), Positives = 224/624 (35%), Gaps = 40/624 (6%) Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + L + ++ + G V E+ + + ++ Y + Sbjct: 48 AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + +++ L + H + + + L + Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155 Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 + +DK V G L YAN F+ G+ + D Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209 Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 P + + R + A A ++E ++ + N+ Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487 + D + ++ + L IL + + + E L N+A + G Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325 Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P + E+L R +++ L T + +++ + Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385 Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + DI+ + + +L A+ AE+ KS FLA +SHEIRTPL AI+G Sbjct: 386 PMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FS+++ Y+ I+++ +++L ++ND+LD+SKIE+G + P++L Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 E ++ + E + + + I D + Q+ N L+NA FT +G +I Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + T + + V+DTG+G+ +++ + F ++ + +GTGLGL + + ++ Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S KG+ P Sbjct: 615 EKIGGEIGVTSELGKGSTFYFTIP 638 >gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 775 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 130/608 (21%), Positives = 236/608 (38%), Gaps = 30/608 (4%) Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279 + + Q+ R+ + + + + + LLT +E LP + + Sbjct: 39 AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLIDA 98 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337 +S E L L G Sbjct: 99 ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHETVAAILVENKYVLDQL 158 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L ++ L STLL A + +ML + Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 AR+H +Q N + + + + + +R + +L Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272 Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ + F+VF Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 + + + + K+ ++I S +S DIS+ + + Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688 R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A + I + Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELEELP 505 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V DTG G+ Sbjct: 506 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-RVTVSVVDTGYGI 563 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + KPF ++ EGTGLGL L+K+M++ G + +T +G + Sbjct: 564 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEGCCFTLAL 621 Query: 809 PLYDTSHP 816 P P Sbjct: 622 PFVAVHAP 629 Score = 52.3 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 27/280 (9%), Positives = 73/280 (26%), Gaps = 22/280 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E L H Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELEELPHLPDE--LGV 513 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLT 352 + + L ++ + S +T Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVT 553 >gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola DG893] Length = 1054 Score = 332 bits (851), Expect = 2e-88, Method: Composition-based stats. Identities = 101/637 (15%), Positives = 216/637 (33%), Gaps = 47/637 (7%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 +K + V E + +Q + + +L Sbjct: 190 LSSSAEKTEQEQVLAGQLKRVLNEAQETLQRQPDASPILKSELLRYSKSDDVSSIALLNR 249 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + P+ + + + + ++ + + ++ + ++ D Sbjct: 250 QGEPIAQAGKVNAFSPGEVQQLSGADNLAIWLP-DFEGSLVSRWKAGQYHYRLPVTGLPD 308 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 E + N SF L + + L Sbjct: 309 GTELMAERPAAPLIQAIETQR-------NKSFAFLAGMTLLSILASFFLSRVLTLPLSRL 361 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + R R +R+H + +M+ + Sbjct: 362 NKASRHLHDKIRHQRQSELPDSRVHEYASLSASLKSMSDTLTHTFAELDNARANL----- 416 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 +++ + R++ L ++LEA+++ I + +G I N+ L GY ++ Sbjct: 417 ELEVKTRTRELVNTSAMLSNVLEASTEMAIIATDTDGTITLFNKGAENLLGYSSSSMVGT 476 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLR 542 ++ + + + + K K + + Sbjct: 477 HSPALFHLSSEIEERSQELYEETGETVSGFDVLVQRPLHEGSETREWSYVNKLGKQIPVM 536 Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + + + + DI+E K+ + K++F++ VSHE+RT Sbjct: 537 LTVTPIRDDVDRITGFLGIAQDITERKRLE--------------QMKTEFISTVSHELRT 582 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 PLT++ G ++ R G + + E N R+ + ++NDLLD KI +GK++ Sbjct: 583 PLTSVSGAIGLVLGGRLGDIP-EKAQELLNTAQRNSERLAHLINDLLDTDKIAAGKIHFD 641 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 + + + +++ + Y E+ + + + + D++ +KQ+ N+LSNAI F Sbjct: 642 MQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKVDVQRLKQVLANLLSNAIKF 701 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P GG + I T T + + + V D G G+ K + F Q +S + GTGLGL Sbjct: 702 SPDGGTVSIEATSTDTD-ITVSVVDQGPGIPEDFQHKVFQKFAQADSSDTRQKGGTGLGL 760 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + + +V G +T KGT P ++ Sbjct: 761 AITRELVKRMGGTIGFETTEGKGTRFFFTLPAVRSAQ 797 Score = 53.1 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 44/393 (11%), Positives = 92/393 (23%), Gaps = 32/393 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++ +G + M+G + + + T G Sbjct: 449 TDTDGTITLFNKGAENLLGYSSSSMVGTHSPALFHLSSEIEERSQELYEETGETVSGFDV 508 Query: 149 LWPI---EGTNLY-----------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194 L EG+ +P+ L PI +GF G I Sbjct: 509 LVQRPLHEGSETREWSYVNKLGKQIPVMLTVTPIRDDVDRITGFLG--IAQDITERKRLE 566 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKD 251 + + + HE++ +SV + + P + N +E AH Sbjct: 567 QMKT--EFISTVSHELRTPLTSVSGAIGLVLGGRLGDIPEKAQELLNTAQRNSERLAHLI 624 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + L + + + + Y + + + Sbjct: 625 NDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKVDV 684 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 NL + P V A + +T V ++ G+ Sbjct: 685 QRLKQVLANLLSNAIKFSPDGGTVS-----IEATSTDTDIT----VSVVDQGPGIPEDFQ 735 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + T + + ++ T F ++ Sbjct: 736 HKVFQKFAQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLPAVRS 795 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 ++ + L I+E D Sbjct: 796 AQAIPIPVHLGARQPAQASPRIL--IVEDDPDA 826 >gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18] Length = 583 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 96/578 (16%), Positives = 222/578 (38%), Gaps = 37/578 (6%) Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP--EQEDFHTINLNQYTKKQYFGTLQNNS 296 + + +T + + + P + I Q + ++ Sbjct: 32 QTTEMTRHLIEDAGLAGMVAAERIHDLHRDAPVVASDASRRIKARVTVITQDGAVIGDSD 91 Query: 297 KES---FEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLL- 351 E +H + P + +GE + + + + + + L Sbjct: 92 IPPEKLPELDNHLSRPEVREAMTKGEGSSLRYSETLHSDMLYAAHVFRTKAGHAAVMRLA 151 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 +++ T+L ++ I + + A + + Sbjct: 152 LPMSALEA--AKSSFRTVLAWAFITAAITIVCSTYLLAKVSMKPLHAIASMACRIGKGEI 209 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 P + E + ++++ + E +L +IL +GI + + + Sbjct: 210 GTRL-PTYTDPELMELTRALNEMAAKTEAQLDR--LGAEKNRLDTILRGMGEGIMVADPQ 266 Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 G I N A LFG +D+ + ++ + ++ +I+S + + Sbjct: 267 GTITLVNPAFKGLFGL-QDDVEGR---QLIDISRHPALHESFRDIISTRQERI--EELQL 320 Query: 532 STKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + +E+ + + + + HDIS+ +Q + + DF+A Sbjct: 321 HSPKERSVLIHWVPLLEGVVLNGVVAVFHDISDIRQLE--------------KIRRDFVA 366 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTP+T I G++E + + ++ + + + +++DLL +S++ Sbjct: 367 NVSHELRTPVTIIKGYAETLIAGAL--ENPSQAAKFVKIMYSHADRLAVLISDLLTLSQL 424 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESG + L V++ + ++L++ E+ I + S +LAD ++Q+ +N Sbjct: 425 ESGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGAANVLADPVRLEQVIVN 484 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 ++ NA+ +TP+GG + + T + V++ VRDTG+G+ +L + + F ++ ++ Sbjct: 485 LVDNAVKYTPAGGSVTL-TAAEDDGRVVIAVRDTGIGIPPKDLPRIFERFYRVDTARSRD 543 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K ++ + G S+ +G+ + Sbjct: 544 EGGTGLGLSIVKHILQLHGGTVSAESS-GQGSAFFVTL 580 Score = 41.2 bits (95), Expect = 0.79, Method: Composition-based stats. Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 31/270 (11%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-TT 148 D G + ++ G + G +L D+S + + D++ + + Sbjct: 264 DPQGTITLVNPAFKGLFGL-QDDVEGRQLIDISRHPAL--HESFRDIISTRQERIEELQL 320 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 P E + L + L G G+V V +D R L K +++ Sbjct: 321 HSPKERSVLIHWVPL-----------LEGVVLNGVVAVFHDISDIRQLEKIRRDFVANVS 369 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + ++ K + L ++ + + D L LLT + Sbjct: 370 HELRTPVTIIKGYAETL----IAGALENPSQAAKFVKIMYSHADRLAVLISDLLTLSQLE 425 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + L+ +E + + + L V+ Sbjct: 426 SGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGAANVLADPVRLEQVIVNL 485 Query: 329 CPIPF------------FVYSHGNLFYANP 346 G + A Sbjct: 486 VDNAVKYTPAGGSVTLTAAEDDGRVVIAVR 515 >gi|288942028|ref|YP_003444268.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] gi|288897400|gb|ADC63236.1| multi-sensor signal transduction histidine kinase [Allochromatium vinosum DSM 180] Length = 867 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 94/415 (22%), Positives = 185/415 (44%), Gaps = 17/415 (4%) Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 HT+ + + + + M + + ++ + ++ ++ ++ Sbjct: 318 HTLSRDGKELGILILVAAIL---VVLAMLRQAVAAGELARLKTEHAVQASEIRFAALARH 374 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 +SD I + + + ++ ++ G+ D++R +L+ + ++ +L+ Sbjct: 375 SSDLIILTGTDLRARFASDSIQRVLGHTPRDLMRVSLLDYLQPEDRVRASRFIARVLAAP 434 Query: 521 LRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 TL + + I + P L D++E K+ +++L A+ Sbjct: 435 DI-TLVTEWPMRHADGTWRDIEILATNLSHNPAVGGLVLNGRDVTERKRHQHELEQARAA 493 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + K +FLA +SHEIRTP+ A+IG + P+ +Y I +G + Sbjct: 494 AESANRAKGEFLANMSHEIRTPMHAVIGL----SSLLLDSTLLPQQRDYLERIHLAGTAL 549 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L ++ND+LD SKIE+G+M L P+ L E + +L ++ A +K + + A +P Sbjct: 550 LGVLNDILDYSKIEAGRMRLESIPLRLQEVLDTTHALFEIQAEKKPLSLEFELAPEVPER 609 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752 + D + Q+ N++ NA+ FT +GG + + T E + + VRDTG+G+T + Sbjct: 610 LQGDPLRLLQVLNNLVGNALKFTHTGG-VWVGVTCQEQTETSVLIKISVRDTGIGLTPAQ 668 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 LE+ F Q S + GTGLGL + K + + G+ + S +G+ Sbjct: 669 LERLFGVFHQADASTTRQYGGTGLGLSICKRLTELMGGEIGVESVAGQGSTFWFT 723 Score = 37.7 bits (86), Expect = 7.5, Method: Composition-based stats. Identities = 8/156 (5%), Positives = 31/156 (19%), Gaps = 8/156 (5%) Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356 E + +A+ S + + Sbjct: 344 RQAVAAGELARLKTEHAVQASEIRFAALARHSSDLIILTGTDLRARFASDSIQRVLGHTP 403 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 D + ++ L ++ + R ++ + + Sbjct: 404 RDLMRVS------LLDYLQPEDRVRASRFIARVLAAPDITLVTEWPMRHADGTWRDIEIL 457 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + P + + + ++ ++E Sbjct: 458 A-TNLSHNPAVGGLVLNGRDVTERKRHQHELEQARA 492 >gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 642 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 106/375 (28%), Positives = 179/375 (47%), Gaps = 13/375 (3%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK----LFGYPVEDILRKPFTV 499 ME + IL+ I N G ++ + G+ + D+ + F Sbjct: 227 HAAMEQVAADVPQILDLMPGLITRHNAHGNVVCV---AGRDKHACLGW-IGDVTGRGFIN 282 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTM 558 + + + R+ E + + + + ++ Sbjct: 283 RIHVADRIAFLDAFDALRLGESRREFELRFERIDAAGQFVHAALSLSAEHGPDGSFAGVF 342 Query: 559 ---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DIS+ + + S A+ ++ K+ FLA VSHE+RTPL AI+GFS+++ + F Sbjct: 343 VQSRDISDQVAGRLRASTMADEADMANASKTRFLAAVSHELRTPLNAILGFSDILAREMF 402 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 G + R EY I +SG +L +VN +LD+SKIESG+ + EP L E V +++ Sbjct: 403 GKFNDERQREYVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAML 462 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 +L A ++ +++ A + ++AD R+V+QI +N++ NAI FT +GG I + Sbjct: 463 RLQAEQRGVVMTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGIHE-G 521 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++L V DTG+G+ +L +PF Q+ N EGTGLGL L K +VD + G+F I Sbjct: 522 LLVLSVSDTGIGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIA 581 Query: 796 STPAKGTLIEIIFPL 810 S +GT++ I P+ Sbjct: 582 SQEGEGTVVTIRLPV 596 >gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1] gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1] Length = 1689 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 104/511 (20%), Positives = 190/511 (37%), Gaps = 23/511 (4%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 ++A + N D + G + N + L + + Sbjct: 689 RRSRMAAQLESSMNKFHALFDSVMDACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSL 748 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L + I + + + A + ++ K+ + Sbjct: 749 TQFHLADTFMGSAVQIAQSVEDVLKQGLLKFEADIT-----DSQGQSIPAEVTLKSIELN 803 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + R+ R + E L ++L + G+ + G N ++ + Sbjct: 804 TERFVLATYHNLAERRLVDRLIRHERNLLKNVLGMSPIGVWVC-VNGTCRYVNAQMTLMT 862 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G VE + F P HY+ E+ T E G + + Sbjct: 863 GLEVEHAVADIFLQ------PKDYWHYIRELAPEQECITFESKLKGYHGQILDVLFTAYP 916 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 DI++ K + +L+ AK A+ + KSDFLA +SHEIRTP+ AIIG Sbjct: 917 TFYDGQHANLCWALDITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIG 976 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 S + + +Y + ++ +L+I+ND+LD SKIE+ K+ + LD Sbjct: 977 MSYLALQTDLA----EKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLD 1032 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724 E +++ +++ E + + A + PR + D + + QI LN +NA+ F+P G Sbjct: 1033 EVLTQLNNVIGFKVEENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSD 1092 Query: 725 IIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 I++S + V D G+G+ + + F Q S + GTGLGL + Sbjct: 1093 ILLSCQAELDKQGATLTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAIC 1152 Query: 782 KAMVDANMGKFYIFSTPAKGTLI--EIIFPL 810 K + + G+ + S +G+ + PL Sbjct: 1153 KRLSELMQGEVWCESELGQGSRFYLRLHLPL 1183 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 34/367 (9%), Positives = 98/367 (26%), Gaps = 20/367 (5%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 ++ + +A + + ++ L H + K Sbjct: 468 FEVQPTQSWGQTLKDFAADKLDMISLISASEDRKQRILFTDAIGHFPAVIVMRKDAEL-V 526 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF---FVYSHGNLFYANPSF 348 R + + + D+ P Sbjct: 527 DGIEGLFGKTVAVTRGDITEELLRKKYPEINIIAFDRLEDVLSTTLASQVDAAVMLLPKA 586 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASARLHT 402 + ++ I L + + + + I +R T Sbjct: 587 GQSLLSPANKELTIVAPLDDEFEHSIGVRRDWPELQSILNKALAQIPSSTRAELDSRWFT 646 Query: 403 IQWNRE------NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 ++++ A++ + G++ E + ++E + + + Sbjct: 647 VKYDFGMDPQQIKRWAISSAMVILGLFACFILWNYGLKRELLRRSRMAAQLESSMNKFHA 706 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF-LEQNTPSVMNHYLT 514 + ++ D II++ G+I N A+ L G ++ T F L Sbjct: 707 LFDSVMDACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSLTQFHLADTFMGSAVQIAQ 766 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLS 572 + + + L+ + + + + + + +L T H+++E + + Sbjct: 767 SVEDVLKQGLLKFEADITDSQGQSIPAEVTLKSIELNTERFVLATYHNLAERRLVDRLIR 826 Query: 573 HAKKIAE 579 H + + + Sbjct: 827 HERNLLK 833 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 14/156 (8%), Positives = 36/156 (23%), Gaps = 4/156 (2%) Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 L Y + + NL + PI +V +G Y N L Sbjct: 801 ELNTERFVLATYHNLAERRLVDRLIRHERNLLKNVLGMSPIGVWVCVNGTCRYVNAQMTL 860 Query: 351 LTK----YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 +T + D + L + + ++ Sbjct: 861 MTGLEVEHAVADIFLQPKDYWHYIRELAPEQECITFESKLKGYHGQILDVLFTAYPTFYD 920 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 +++ + + + ++ + + Sbjct: 921 GQHANLCWALDITQEKAIQAELASAKLQADAANRAK 956 >gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1] Length = 1000 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 20/382 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + + + S +G+ ++ +G I+S N A++ L GY D Sbjct: 473 EALEANERAVQNMARYRSTFNNAIEGMYRMSIDGRIVSANPAMAHLLGYDSVDA----LI 528 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554 ++ ++ L L+ T + K K + + + + ++ Sbjct: 529 AAGKEAVTRCFPGGDGQLQQLAFAGKLQLETCYTGKNGKSIWVDHFSQMIRGANGLPSHI 588 Query: 555 SLTMHDISEWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 ++ DI+E K+ + K++A ++ K DFLA +SHE+RTPLTAIIG+SE Sbjct: 589 EGSLTDITERKERERAEQDREIDKLEKELATASATAKGDFLANMSHELRTPLTAIIGYSE 648 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + +Q + + I RS + +L+I+ND+LD SK+E+ + + P++ + Sbjct: 649 SLNDQSLSATDE---QQAVDTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPYLLL 705 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 + S A + + + +P RI AD +KQI LN+ SNA+ FT G + I Sbjct: 706 KDVYSYFTQKARSQNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKEGS-VTI 764 Query: 728 STTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 ++ V DTG G++ ++ K + + Q S + GTGLGL ++K + + Sbjct: 765 DVGWDEERKLTRFSVIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQLAE 824 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 G + S P KG+ + Sbjct: 825 KMGGTIEVTSEPGKGSCFTVYI 846 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 18/181 (9%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPI 331 L + S + + + + T + Sbjct: 438 LPSAPIYLAATPIGILSGAVMISFALADRIKRMQKEALEANERAVQNMARYRSTFNNAIE 497 Query: 332 PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390 + S G + ANP+ L Y SVD + AG + P + ++ + Sbjct: 498 GMYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPG--GDGQLQQLAFAGKL 555 Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 + + S+ + G + + + +R + Sbjct: 556 QLETCYTG-------KNGKSIWVDHFSQMIRGANGLPSHIEGSLTDITERKERERAEQDR 608 Query: 451 V 451 Sbjct: 609 E 609 Score = 45.8 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 13/170 (7%), Positives = 42/170 (24%), Gaps = 6/170 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + + G + + + +G + + + + + L Sbjct: 499 MYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPGGDGQLQQ-LAFAGKLQL 557 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KKF 204 +T G + + +D + I N S G + + + + K Sbjct: 558 ETCYTGKNGKS--IWVDHFSQMIRGANGLPSHIEG--SLTDITERKERERAEQDREIDKL 613 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + ++P + ++ + A + Sbjct: 614 EKELATASATAKGDFLANMSHELRTPLTAIIGYSESLNDQSLSATDEQQA 663 >gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366] gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366] Length = 1179 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 127/625 (20%), Positives = 239/625 (38%), Gaps = 36/625 (5%) Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 +I V + Q + D++ K L+ ++ Sbjct: 184 ADIDGFLKRVNPAFTNTLGWQEQDLLNNSFYSFIHPYDLQPTSDELKK------LSDGKN 237 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 ++ F T T + T ++ K +L E+ ++ Sbjct: 238 AVNFSNRFKTKKGEYRTLQWSVTTETDSQKILAIARDVTKDKNLQQKILTSESRLKSFIE 297 Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 F + GNL + N + Y +++ G + + N+ ++ + Sbjct: 298 NAQGLMFTHDLSGNLLFINNAGAHYLGYT-KQEMQSMGLFDLIPKDHHAALNDYLREIKN 356 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + + T+ + N + + ++ Sbjct: 357 KGKAQGL------MTTVHKKGN--HIIWIFNCVLENNATNKPYVICNSIDITERHNLVKE 408 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQN 504 + +L + G +N L+ + ++F G+ E L + Sbjct: 409 LRTRNKKLELANDIARLGNWELNLVEQKLTWSEVTRQIFEVGHDFEPSLESELLYYKPGT 468 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDI 561 T + L + LE L T + + +R I S T+ DI Sbjct: 469 TRENRFNALNAAVLHGKSWDLELELL--TAKGNAIWIRSIGVPEFLEGRCYKISGTIQDI 526 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 ++ K+ + L AK+ AE + KS+FLA +SHEIRTPL IIGF++++ + N Sbjct: 527 TKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQL----NE 582 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 +Y + + +SGN +L+ +ND+LD SKIE+GK+ +++ +L E E+ +++ Sbjct: 583 TQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKYQVQS 642 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--- 737 K + + + + ++P+ I AD +KQI +N+L NA+ FT SG +I + +N E+ Sbjct: 643 KGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFTESG-EIELKVEALTNPELPEI 701 Query: 738 --ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 VRDTG+G+ + K F Q S R GTGLGL ++ ++ + + Sbjct: 702 KYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQLQVE 761 Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820 S KG++ + S P + I Sbjct: 762 SVIGKGSVFYFE--IILQSEPGESI 784 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 74/206 (35%), Gaps = 20/206 (9%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + K + E+ + +++ D I + +G + N A + G+ +D+L F F+ Sbjct: 160 EIKSKKELNHFLKLYKSSHDLICEADIDGFLKRVNPAFTNTLGWQEQDLLNNSFYSFIHP 219 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + L ++ + TK+ + +L+ + S D+++ Sbjct: 220 YDLQPTSDELKKLSDGKNA--VNFSNRFKTKKGEYRTLQWSVTTETDSQKILAIARDVTK 277 Query: 564 WKQEKNKLSHAKKIAEK--ESSHKSDFLARVSHEIRTPLTAI-------IGFS-EVIKN- 612 K + K+ ++ + E++ F H++ L I +G++ + +++ Sbjct: 278 DKNLQQKILTSESRLKSFIENAQGLMFT----HDLSGNLLFINNAGAHYLGYTKQEMQSM 333 Query: 613 ---QRFGPLGNPRYIEYANYIDRSGN 635 + +Y I G Sbjct: 334 GLFDLIPKDHHAALNDYLREIKNKGK 359 >gi|194334028|ref|YP_002015888.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] gi|194311846|gb|ACF46241.1| multi-sensor signal transduction histidine kinase [Prosthecochloris aestuarii DSM 271] Length = 1139 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 106/763 (13%), Positives = 232/763 (30%), Gaps = 55/763 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G L+ ++ G + + G R D+ D + Sbjct: 382 PEGELQMANKAASDFHGLSSDTIRGKRFKDLLPSSVADAIIKNLHQVATTRKPAVILDRI 441 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +GT + + G + + ++L S+L + Sbjct: 442 RKDGTVYSFQSVVFPISAEGEKPFKLGISSIDLTKRENALIQLQESQRKLQALLSNLPGM 501 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKYPLLTS 264 + + + S + ++ S + A KD + ++ Sbjct: 502 AYRCLNTPEWPMEFVSDGAFALTGYRPQELTDIVNRLSFSHLIASKDCLRLWQEVQDALQ 561 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGEN 320 ++ + + Q + + + S + E E Sbjct: 562 KKQPFSLRYELIQKTGKQIHVHEQGCGVYDRSGNLIALEGFIMNITDQVLFQKQIQEKEA 621 Query: 321 LTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + P F+ G + N L + + + +TL + Sbjct: 622 RFRTLFEGAPDAIFLADCSTGIITGVNRKASELLGKELPEIVGK--HFTTLHWPDERHIA 679 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + + + + + + I + E G + Sbjct: 680 EAAFIAARQIASTADATSQPQQFNVLHKSGRKIPVEIISQKIQLGNREI--FYGTFRDIT 737 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 R + ++ + + L ++ + I++ +R N F E++ K Sbjct: 738 LRRQAEEALQAKTLLLETVTGSLPAYISMKDRNLRYTYANSYALNKFDLTPEEVKGKCDA 797 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555 ++ + E+L + K + + ++ + L ++ Sbjct: 798 DLFPHQLATLYSADDREVLETTTP-LINKEEELALPDGTVIPVLTNKTPLISNNTVKGIV 856 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA----RVSHEIRTPLTAIIGFSEVIK 611 D +E K+ + K + +S K + L ++H+ LT IIGF+E+ Sbjct: 857 CVSMDRTEQKKVEEKTKTLQTQLH--NSQKMETLGTLSGGIAHDFNNILTPIIGFTEIAI 914 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 P + + + + R+ +V +L S+ + ++ + L V E+ Sbjct: 915 RSL--PSESETIKD-LDTVLRAARRAKKLVQQMLTFSRKDPPRLVIQP----LSPIVEES 967 Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTT 730 + L+Q EK + +L D ++Q+ +N+ +NA+ G + IS Sbjct: 968 LDLMQPSIPEK-VSREIDIEPFQEMVLCDAAQIEQVIINLCTNALQAMDKENGTLRISLK 1026 Query: 731 HT---------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + + V D+G GM+ E +K PF + G+GTG Sbjct: 1027 KKKITNKNIVMCGAIEPDKDYALFTVGDSGRGMSEEERKKMFDPFFTTKPA----GKGTG 1082 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPH 817 LGL + +++ + G + + G+ I I P L DT P Sbjct: 1083 LGLSVVYGIIEEHNGAISVQTRKGSGSEITIYIPLLEDTEQPE 1125 Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 10/163 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R +++ +E +L ++ E + + I I EG + N+A S G + I K F Sbjct: 353 RRSRKALENLHDELQALYEHSPNHIIICTPEGELQMANKAASDFHGLSSDTIRGKRFKDL 412 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 L + + L ++ + + K+ + S + ++ + + Sbjct: 413 LPSSVADAIIKNLHQVATTRKPAVI---LDRIRKDGTVYSFQSVVFPISAEGEKPFKLGI 469 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + D+++ +N L ++ K + S+ + TP Sbjct: 470 SSIDLTKR---ENALIQLQESQRKLQALLSNLPGMAYRCLNTP 509 >gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR] gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina loihiensis L2TR] Length = 866 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 18/372 (4%) Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + + + + E +L NRA + FG E + K + V+ Sbjct: 71 SLQLFEQVFNDLPTRVYWRDPELKLLGGNRAFANDFGIDPESLAGKTDAEIDSLASNDVL 130 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565 + S K + L + +DIS K Sbjct: 131 LERDRKTFSQQAPSV-NAEIELKV-SGKSQWVEHSSVPLYDDDHNIIGILGSYYDISGIK 188 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 ++ AK+ AE+ + K +FLA +SHEIRTP+ AI+G + + + Sbjct: 189 SVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTEL----TQKQKR 244 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y ID S +L ++ND+LD SKI++GK+ + P L + ++ + A +K + Sbjct: 245 YIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAYDKDLE 304 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILR 740 + NIP R++ D + Q+ +N++SNAI FT G +I ++ + N + + Sbjct: 305 FIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFTEDG-EINVAVNLLDSSRDNVLLRIS 363 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+GM + K F Q S + GTGLGL +++ ++ G + S + Sbjct: 364 VTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVTSAAGQ 423 Query: 801 GTLI--EIIFPL 810 G+ E+ PL Sbjct: 424 GSTFYIEVELPL 435 Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 10/134 (7%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIG 107 + N +L S++ +F+ R W D L + G Sbjct: 53 SRRNALTAPFRQP----FLSSDSLQLFEQVFNDLPTRVYWR-DPELKLLGGNRAFANDFG 107 Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 + G ++ + D +Q + G + ++ +++ Sbjct: 108 IDPESLAGKTDAEIDSLASNDVLLERDRKTFSQQAPSVNAEIELKVSGKSQ--WVEHSSV 165 Query: 167 PIYSRNREFSGFRG 180 P+Y + G G Sbjct: 166 PLYDDDHNIIGILG 179 >gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 546 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 171/376 (45%), Gaps = 23/376 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E L +++E ++DG+ II+ I + N + +L G+ E+ + +P L Sbjct: 188 REKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRDAQG 247 Query: 509 MNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYSLT----MHDIS 562 +N L + + + G T++ + L ++ + L+ + DI+ Sbjct: 248 VNICLNDCPLQRHPELANPVVEGRITTRDGRELFIQNRYAPQRNALGTLLSAIANVRDIT 307 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 K E+ + + F++ +SHE+RTP++ I GF+E + G + Sbjct: 308 AQKAEEERQNT--------------FISVISHELRTPVSIIKGFAETMLR-PDGQFTVEQ 352 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y E I + + + DLLD+S+I +G + L + VSL V E + + Sbjct: 353 YREALQVIGEEADRLARQIQDLLDVSRIAAGGLRLEYSDVSLQLLVKEVVRRFAAQVGD- 411 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 RI +++P + AD ++Q+ N++ NA+ ++P+GG I I E I+ V Sbjct: 412 RIEFEIRVPDDMPPVYADYERLRQVFTNLIENAVKYSPNGGTIRIGARAE-GEMAIVYVA 470 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ E + + F ++ N + G+GLGL + +A+V+A+ G+ ++ S +G+ Sbjct: 471 DQGIGIPPEEQDLIFERFYRVDNRLRRDRPGSGLGLYITRAIVEAHGGRIWVESQVGRGS 530 Query: 803 LIEIIFPLYDTSHPHD 818 PL P + Sbjct: 531 RFLFTLPLSRRRLPGE 546 Score = 44.2 bits (103), Expect = 0.094, Method: Composition-based stats. Identities = 30/328 (9%), Positives = 63/328 (19%), Gaps = 14/328 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146 ID + + + + G + IG +V I N + L+R Sbjct: 207 IDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRDAQGVNICLNDCPLQRHPELANP 266 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKF 204 I + +L Y+ R G V Sbjct: 267 VVEGRITTRDGR---ELFIQNRYAPQRNALGTLLSAIANVRDITAQKAEEERQNTFISVI 323 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 SH E Q R +V + + + Sbjct: 324 SHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRIAAG 383 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + + + NL Sbjct: 384 GLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDDMPPVYADYERLRQVFTNLIEN 443 Query: 325 TVDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V P + + Y + + + E + L + Sbjct: 444 AVKYSPNGGTIRIGARAEGEMAIVYVADQGIGIPPEEQDLIFERFYRVDNRLRRDRPGSG 503 Query: 379 NAIKPVM-LYRSDRTCIAASARLHTIQW 405 + + + I +++ Sbjct: 504 LGLYITRAIVEAHGGRIWVESQVGRGSR 531 >gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 421 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 75/373 (20%), Positives = 154/373 (41%), Gaps = 25/373 (6%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + R++ E L +IL + +G+ +++ + N + LF + + + Sbjct: 68 EQDKLHREIHDEAFNLRTILASMEEGVMVVDTHHNLRLVNPSFLSLFDLKCDPVGQSVLR 127 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLT 557 + +T L Q + T +++ ++ + + Sbjct: 128 TL----RETAFEEIITAALRTGQPQRGDVE---RTSDKRHFAVHAVPVKEFSGGPGIVAI 180 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 + DI+ +Q + + +F+A VSHE+RTPL+ G+ E + + P Sbjct: 181 IRDITRLRQLEEV--------------RREFVANVSHELRTPLSIFHGYLENLLDAPSMP 226 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + E + + + ++ DLL ++++ES + + + L + Sbjct: 227 RKD--QTEIFEILRKHSRRLNALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQ 284 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 K++ ++ +++PRI AD + ++Q+ N+L NA+ +T GG I + N V Sbjct: 285 KLANKKLALQIEAHDDLPRISADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQ-NGHV 343 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 +RV D+G G+ +L + F + ++ GTGLGL + K ++ + G S Sbjct: 344 EVRVEDSGQGIPPADLPHIFERFYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESK 403 Query: 798 PAKGTLIEIIFPL 810 KGT I + PL Sbjct: 404 YGKGTTIILHLPL 416 >gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei 112] Length = 771 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 65.4 bits (158), Expect = 4e-08, Method: Composition-based stats. Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + A + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|220908951|ref|YP_002484262.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] gi|219865562|gb|ACL45901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425] Length = 1428 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 101/746 (13%), Positives = 238/746 (31%), Gaps = 62/746 (8%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYGKTTLWP 151 + S K G ++I +L +S + D + + + + + Sbjct: 574 YEYFSAGCEKLFGYKCQELIADKLLWMSRVFPPDRETILMPMFDTLLIEGNTTAEYRFYH 633 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ ++ AA +R + + L+ ++ E Sbjct: 634 RDGSLRWISSAYAA-----EQIAPDCWRITTLCQDITDRKQAELQLRELNNALTNTVEGI 688 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + S + + D Y + S + Sbjct: 689 SRLDPQGHYTFVNQSYADMMGYTAAEMLGQHWHITVYPDDREAALAAYEQMRSWGKA-KL 747 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESF-----------EYLSHRNHPSLSAYFDEGEN 320 + + + ++ + ++ + + + E E Sbjct: 748 KSRGLRKDGAVFHRRIVMVAVYDDQESFSGHYCFMEDVTDKMQLKTERAKVELALRESEE 807 Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 PI GN Y N + ++ D + G + + + + + Sbjct: 808 RFRTLSAAAPIGICQADLDGNCLYTNARWQEMSGLSFEDSLGQ-GWVQAIYPDDRSTLSA 866 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A + D + ++ + E + + + + Sbjct: 867 AWAAYVRGECD------HLPDFRLLTPEGKIRWVSTCVGAIKSSTGEIIGYVSTDEDITE 920 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 + ++ ++ + +IL+ + I +++ + L NR ++ ED++ K Sbjct: 921 RKQAEQALQDSQQRFQTILDNSPTAIYLLDPQNNFLLANRVCAEHVSLTPEDLVGKSIYE 980 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLT 557 F + V + LE++ +++ + + Y Sbjct: 981 FWPREIADVFAANNQTVFETGQLLQLEEVVPHLDGQQRTYITVKFPLRDLMGNPYAICGI 1040 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DISE K+ +++ A+++ + ++H++ LT I+ S++++ Q Sbjct: 1041 STDISETKELESQFLRAQRL-----ESIGTLASGIAHDLNNMLTPILVSSQLLQRQ---- 1091 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L R E ++ + D++ +L ++ GK P+ + ++E + + Sbjct: 1092 LPEGRPQELLKIMEANARRGADLIRQVLTFARGTEGK----RMPLQIKHLLTEIQQICER 1147 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730 K I I ++ I D + Q+ +N+ NA P GGQ+ + Sbjct: 1148 TFP-KSIRIALDIPADLAMISVDPTQLHQVLMNLCVNARDAMPEGGQLNLRAADFYADQT 1206 Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 V++ V DTG+GM + LE+ PF G+GTGLGL + + Sbjct: 1207 YRQMNLEAQVGAYVVITVEDTGMGMDSDVLERIFDPFFTTKG----VGQGTGLGLSVVQG 1262 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ ++ G + S+ +GT ++ P Sbjct: 1263 IIRSHSGFIKVNSSIGQGTQFQVYLP 1288 Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 48/491 (9%), Positives = 114/491 (23%), Gaps = 37/491 (7%) Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171 + GM + + ++ ++ + LL + G + P +A R Sbjct: 98 ALSGMAEHQIHHLPVLNQDDRLIGLLTQDALLQGLARKPQPIPSLNPSPPAQSAQTYPDR 157 Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 G V + + + + + Sbjct: 158 -----GM-------DKDVLEQQWKALFDHALDAILIADDQGCYLDANPAACQLLGLSKAE 205 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 + + L E Sbjct: 206 LLSSCVADFADPAVEITQLWQKFIRQGQML--GEFRLRCPDGTVRQTEFAAIANFIPGRH 263 Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFL 349 L S E + FF+ S Y +P+ Sbjct: 264 LSILRDISARVELEAERKRTEVNLQASEAKFRLLTEHLRDAFFICSPNLERYLYISPAVE 323 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 + + + + ++ + + D I+ + E Sbjct: 324 KIWGITTTEIYQNPRSWL-----EQVHPEDWDYFIANTSLDGHFEDYDLEYRIIRPDGE- 377 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469 + + + + G+ + D + + ++ L SI + + +I+ Sbjct: 378 VRWVHVRAYPLTSTQGQIEQMVGVCEDISDRKKAELELIEREAFLSSIYDGADQAVFVID 437 Query: 470 ----REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525 + ++ NR + G +++ K T + L + Sbjct: 438 VTESHDFYYVAFNRLAEQYAGMSSQEVAGKTPEQAFGPVTGAAFRQNYERCLQIGTLSYE 497 Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E++ L + + + L T DIS+ KQ + L +++ Sbjct: 498 EEVVLATH----TVWTLTTLSPLRNQQGAIYRIVGTAVDISDRKQLELSLQASERKL--- 550 Query: 582 SSHKSDFLARV 592 S LA + Sbjct: 551 SQILDRTLASI 561 Score = 114 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 62/525 (11%), Positives = 127/525 (24%), Gaps = 42/525 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G + + + +G +++ + D +D + RQ G+ L Sbjct: 183 DDQGCYLDANPAACQLLGLSKAELLSSCVADFADP--AVEITQLWQKFIRQGQMLGEFRL 240 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208 +GT + AA+ + R S R V + + + KF L Sbjct: 241 RCPDGTVRQT--EFAAIANFIPGRHLSILRDISARVELEAERKRTEVNLQASEAKFRLLT 298 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 E + + + + SP + H +D L Sbjct: 299 EHLRDAFFICSPNLERYLYISPAVEKIWGITTTEIYQNPRSWLEQVHPEDWDYFIANTSL 358 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEG 318 + + L + + + + + E Sbjct: 359 DGHFEDYDLEYRIIRPDGEVRWVHVRAYPLTSTQGQIEQMVGVCEDISDRKKAELELIER 418 Query: 319 ENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E D FV N S + P Sbjct: 419 EAFLSSIYDGADQAVFVIDVTESHDFYYVAFNRLAEQYAGMSSQEVAGKT---------P 469 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + +R + +++ NQ G Sbjct: 470 EQAFGPVTGAAFRQNYERCLQIGTLSYEEEVVLATHTVWTLTTLSPLRNQQGAIYRIVGT 529 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPV 489 + D + + ++ +L IL+ T I I NR+ + KLFGY Sbjct: 530 AVDISDRKQLELSLQASERKLSQILDRTLASITIFRIFANRDWEYEYFSAGCEKLFGYKC 589 Query: 490 EDILRKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 ++++ + +++ +L ++ L + Sbjct: 590 QELIADKLLWMSRVFPPDRETILMPMFDTLLIEGNTT---AEYRFYHRDGSLRWISSAYA 646 Query: 547 KL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 P + DI++ KQ + +L S Sbjct: 647 AEQIAPDCWRITTLCQDITDRKQAELQLRELNNALTNTVEGISRL 691 Score = 98.2 bits (243), Expect = 5e-18, Method: Composition-based stats. Identities = 52/471 (11%), Positives = 123/471 (26%), Gaps = 41/471 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +D G+ +++ +G A +M+G + + ++ K+ Sbjct: 690 RLDPQGHYTFVNQSYADMMGYTAAEMLGQHWHITVYPDDREAALAAYEQMRSWGKAKLKS 749 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-----GIVHVNRVDNDPRALGKRLDK 202 +G + I + + +Y FSG F + + + ++ Sbjct: 750 RGLRKDGAVFHRRIVM--VAVYDDQESFSGHYCFMEDVTDKMQLKTERAKVELALRESEE 807 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDV--LKTE 257 +F L + + L ++ + + DD L Sbjct: 808 RFRTLSAAAPIGICQADLDGNCLYTNARWQEMSGLSFEDSLGQGWVQAIYPDDRSTLSAA 867 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + E LP T G +++++ E Y+S + ++ Sbjct: 868 WAAYVRGECDHLP-DFRLLTPEGKIRWVSTCVGAIKSSTGEIIGYVSTDEDITERKQAEQ 926 Query: 318 G----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + +D P ++ N AN D + + Sbjct: 927 ALQDSQQRFQTILDNSPTAIYLLDPQNNFLLANRVCAEHVSLTPEDLVGKS-------IY 979 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 A ++ + + F + G Sbjct: 980 EFWPREIADVFAANNQTVFETGQLLQLEEVVPHLDGQQRTYITVKFPLRDLMGNPYAICG 1039 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 I + +T+ + + + +L SI + GIA + ++ + Sbjct: 1040 ISTDISETKELESQF-LRAQRLESI-GTLASGIA-HDLNNMLT-------------PILV 1083 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + L + P + + + +T E K + L+I Sbjct: 1084 SSQLLQRQLPEGRPQELLKIMEANARRGADLIRQVLTFARGTEGKRMPLQI 1134 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 30/303 (9%), Positives = 78/303 (25%), Gaps = 12/303 (3%) Query: 55 TDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKM 113 TD++ ++ F I + +D + + + + Sbjct: 914 TDEDITERKQAEQALQDSQQRFQTILDNSPTAIYLLDPQNNFLLANRVCAEHVSLTPEDL 973 Query: 114 IGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 +G + + D + + + + ++G I + P+ Sbjct: 974 VGKSIYEFWPREIADVFAANNQTVFETGQLLQLEEVVPHLDG-QQRTYITVK-FPLRDLM 1031 Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-- 230 + GI + + R + S + I Sbjct: 1032 GNP--YAICGISTDISETKELESQFLRAQRLESIGTLASGIAHDLNNMLTPILVSSQLLQ 1089 Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P R + + + D+++ +E +P Q + Q ++ + Sbjct: 1090 RQLPEGRPQELLKIMEANARRGADLIRQVLTFARGTEGKRMPLQIKHLLTEIQQICERTF 1149 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 +++ + P+ NL D P + FYA+ ++ Sbjct: 1150 PKSIRIALDIPADLAMISVDPTQ--LHQVLMNLCVNARDAMPEGGQLNLRAADFYADQTY 1207 Query: 349 LLL 351 + Sbjct: 1208 RQM 1210 >gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2] gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2] Length = 854 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 119/604 (19%), Positives = 240/604 (39%), Gaps = 57/604 (9%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293 + +++ + +L+ + L + E +L + I + K + Sbjct: 2 EIAERLAKERRARLAAERLLEQKSRELFAANEKLALHARSLSDQIVEQRQVVKSALSEAE 61 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFL--- 349 ++ + + E ++++ F V+ L AN ++L Sbjct: 62 VLKGQNNRF--MHDLERAHTAAVVAERRLWDSINTIRDGFAVFDTNKKLVTANRAYLASF 119 Query: 350 ---LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 L S + I G + L+D + ++ ++ D + W Sbjct: 120 EGHKLVPGISYEAILRLGAETGLVDIGGRNLDDWCAEMLARWDDDPIEPVVLQFANGTW- 178 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + + + + N E M++ + +EA DG Sbjct: 179 ------VRLVDHRSRDGDMVCLALNIT----------------EQMRIWAAIEAIPDGFV 216 Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + +RE +++ N+ L+ G E ILR + V +L E L Sbjct: 217 LFDREDRLMTCNQRYRDLYPESAEAMVPGASYESILRYGLEQGAYADALGVEEDWLKERL 276 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + ++ + + + L + I++ + D++ ++++ L A+ Sbjct: 277 ARRRLKSDQFE--QQMADGRWLRV---IEQETPDGGHVGLRVDVTAAREQQTLLETARMA 331 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE + KS FLA +SHEIRTP+ ++G +E++ + +A+ I SG + Sbjct: 332 AEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNL----TEEQRLFADTIRSSGEAL 387 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LD SKIE+ ++ LH EP L+ + E L+Q A K + + F +P R Sbjct: 388 LVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRARAKGLDLMIDFDMFLPTR 447 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753 + D ++Q+ N++ NA+ FT +G ++ + +++ + V DTG+G+ L Sbjct: 448 YIGDAGRLRQVLTNLMGNAVKFTETGHVLVRVVGIEAEPGSQQLHITVEDTGIGIAPEHL 507 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811 + F Q+ + + EGTGLGL + + +V+ G ++ S P KG+ + P+ Sbjct: 508 DHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVDSEPGKGSCFGFRLALPVA 567 Query: 812 DTSH 815 + Sbjct: 568 EEDA 571 >gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans PsJN] Length = 776 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 117/660 (17%), Positives = 226/660 (34%), Gaps = 24/660 (3%) Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 P+ S + F +V A S + + + Sbjct: 6 RPLPSADALFEHAACGLLVTDADGRILRVNATFCGWLGYESAELTGARHIQDLLSAGGKV 65 Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284 F Q P L+M+ V+ + AH+D P+L + + + + Sbjct: 66 FYQTHWAPLLQMQGSVAEVKLNMAHRDG----HMVPMLLNAVRHCHGDVTYLEVAVLIVA 121 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 + + + S H E ++ + + + + + + Sbjct: 122 DRHKYEQ-ELLLARRNAEASVAAHQRAQRELQESRDVLSLAMRGARMGAWSHEPKSGKFW 180 Query: 345 -NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 + L Y + GG L+ L + V A R Sbjct: 181 WSRELEALAGYAEGRFADTPGGFFELIHPGDL--IALNEAVDHAVESGDDYVAEFRFLHA 238 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + M ++ E + G+ + + + + + + +I E SD Sbjct: 239 SGD---WCWMEGRGRATYDRHGEPLTIYGLGIDITERKEAQTVLLRQ----AAIFEHLSD 291 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 I I + G I N ++ GY + +IL KP +FL + L+ + Sbjct: 292 AIVITDLRGNITDFNVGGERMLGYRMREILGKPVALFLPPEETLNIRREALAALAAEGTW 351 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E + + I DI+ + + +L+ K Sbjct: 352 RGELPFVRRDGSRGVCETVIKPLANARGDIYGAVSINRDITGRRHAEQQLTRLNLELSKA 411 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 K +FLA ++HE+R PL + E+++ + F + + R + +V Sbjct: 412 DRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFD---RQLQHMTHLV 468 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +DLL++S+I GK+ L + + L A+ A+ + + + ++AD Sbjct: 469 DDLLEVSRITQGKLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADP 528 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 + Q+ LN+L+NA +TP GG I + +E ++ VRD+G+G+ L + F Sbjct: 529 TRLSQMILNLLNNAAKYTPPGGTISL-AAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFS 587 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS-HPHDC 819 Q+ + G G+GL L + + + + G FS P KG+ I P+ + P D Sbjct: 588 QLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSDGPGKGSEFVIRLPVTKAAMQPSDS 647 Score = 85.8 bits (211), Expect = 3e-14, Method: Composition-based stats. Identities = 46/391 (11%), Positives = 103/391 (26%), Gaps = 32/391 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCD-VSDILHIDPNNHIGDLLKRQNTWYGK 146 DA G + ++ +G + ++ G + D +S + H LL+ Q + Sbjct: 25 TDADGRILRVNATFCGWLGYESAELTGARHIQDLLSAGGKVFYQTHWAPLLQMQGSVAEV 84 Query: 147 TTLW-PIEG-------------TNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRV 189 +G +++A L + R +E R V Sbjct: 85 KLNMAHRDGHMVPMLLNAVRHCHGDVTYLEVAVLIVADRHKYEQELLLARRNAEASVAAH 144 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLT 244 R L + D + + G S E + + + R + Sbjct: 145 QRAQRELQESRDVLSLAMRGARMGAWSHEPKSGKFWWSRELEALAGYAEGRFADTPGGFF 204 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 E D + E + F + + + + E Sbjct: 205 ELIHPGDLIALNEAVDHAVESGDDYVAEFRFLHASGDWCWMEGRGRATYDRHGEPLTIYG 264 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + + + GN+ N + Y+ + + Sbjct: 265 LGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKP 324 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L P+ + N + + ++ T L ++ + + T I AN Sbjct: 325 V---ALFLPPEETLNIRREALAALAAEGT---WRGELPFVRRDGSRGVCETVI-KPLANA 377 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 + I + R ++++ ++L Sbjct: 378 RGDIYGAVSINRDITGRRHAEQQLTRLNLEL 408 >gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803] Length = 753 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 101/534 (18%), Positives = 206/534 (38%), Gaps = 30/534 (5%) Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYA 344 + T Q + + A + + P F + + Sbjct: 230 RVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIW 289 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 NP+ + + + I L L D K +L + Q Sbjct: 290 NPTAERIFGWTETEIIAHP---ELLTSNILLEDYQQFKQKVLSGMVSPSLELKC-----Q 341 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + + + + + + ++ + L S++ T+D Sbjct: 342 KKDGSWIEIVLSAAPLLDSEENIAGLVAVVADITEQKRQAEQIRL----LQSVVVNTNDA 397 Query: 465 IAII------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + I + IL N A +K+ GY E++L K V T + + +S Sbjct: 398 VVITEAEPIDDPGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAIS 457 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHA 574 T+ + K+ + + + + + D++E ++ + Sbjct: 458 QWQSVTV--EVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLAL 515 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 ++ ++ S K+ F + SHE RTPL+ + +++++N L + + I S Sbjct: 516 ERE-KELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSV 574 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++ +++D+L I++ E+GK+ + + L + I +QL ++ + + Sbjct: 575 KNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSD-QYYFDFICSAQD 633 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 + L D R V+ I N+LSNAI ++P GGQI I+ + +E++I V D G+G++ + + Sbjct: 634 TKALVDERLVRSILSNLLSNAIKYSPGGGQIKIALSL-DSEQIIFEVTDQGIGISPEDQK 692 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +PF + N GTGLGL +AK VD + G + S +GT + I Sbjct: 693 QIFEPFHRGKN--VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 744 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 16/157 (10%), Positives = 50/157 (31%), Gaps = 5/157 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148 D + ++E K G A +M+G + + + + + + + Sbjct: 408 DPGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEVI 467 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G+ ++ + +P+ ++ ++ + + + L+++ Sbjct: 468 NYRKDGS--EFWVEFSLVPVANKTGFYTHW--IAVQRDVTERRRTEEVRLALEREKELSR 523 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + S E S L ++V+ L Sbjct: 524 LKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDP 560 Score = 58.1 bits (139), Expect = 7e-06, Method: Composition-based stats. Identities = 22/247 (8%), Positives = 73/247 (29%), Gaps = 10/247 (4%) Query: 84 RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143 R + ++ ++ + + G ++I S+IL D +L + Sbjct: 275 RGIFTLNLADQIQIWNPTAERIFGWTETEIIAHPELLTSNILLEDYQQFKQKVLSGMVSP 334 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ ++ I L+A P+ +G +V + L Sbjct: 335 SLELKCQKKDGS--WIEIVLSAAPLLDSEENIAGL--VAVVADITEQKRQAEQIRLLQSV 390 Query: 204 FSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKD--DVLKTE 257 + ++ + ++ I + ++ T + + Sbjct: 391 VVNTNDAVVITEAEPIDDPGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELD 450 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317 + S+ S+ + + + +++ + + N + +++ + + +E Sbjct: 451 RVRQAISQWQSVTVEVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEE 510 Query: 318 GENLTPE 324 Sbjct: 511 VRLALER 517 >gi|254192371|ref|ZP_04898810.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei S13] gi|169649129|gb|EDS81822.1| sensory box histidine kinase/response regulator [Burkholderia pseudomallei S13] Length = 769 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362 S R + +L + V HG L Y NPS L + Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + + + + + + + Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + I + R ++ L ++EA+ D I + I S N A Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 ++FGY + + L E + L ++ + Sbjct: 284 RMFGYDEHAARGCDVAMLIVPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341 Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591 + + + T+ D E ++ + + A++ A+ + K + LA Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+RTPL I G+ EV++N G L + + IDRS + +V D+LD S + Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 +GK+ L PV L V++ + A I + A + D ++Q+ N+ Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNA FTP GG++ +S + L V DTG G++ L + F + + Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 G GLGL + + + + + GK S +GT I P Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 53/225 (23%), Gaps = 5/225 (2%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146 D HG L ++ IG A + G+ DV L+ R Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 W VPI AA P+ + +G IV ++ + A + L + Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + G S + + + + + + + + E Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIVPRWLRNHPLPESVPDMRE 321 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + + + Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366 >gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896] Length = 602 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 80/369 (21%), Positives = 157/369 (42%), Gaps = 22/369 (5%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQ 503 ++ E +L +I+E DG+ I+++G I+ N V KL +E + F Sbjct: 251 EISSEQDKLNAIIEHMEDGLIAIDQQGKIIHYNIVVEKLLDISMENKQYFDQIFLPMQNN 310 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + + +E+ L Y + DI+E Sbjct: 311 LSLKRIVQQNSEMNEGMKPSEFTIEINSRILSVSSALFSDTSNTLT---GYVVLFQDITE 367 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + +F+A VSHE++TP+T I +SE + + Sbjct: 368 HERL--------------DHMRKEFVANVSHELKTPITTIRTYSETLLDGAL--KDPAIA 411 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++ I + + + ++ DLL +S I+ K +F+ ++ + ++I ++LY K Sbjct: 412 KKFMEVIVKESDRMTSLIRDLLQLSHIDFKKETWNFDYTDINTLIQDSIDKMELYYQTKH 471 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + ++ +I D ++Q+ +NILSNAI +T G+I +S + + + + D Sbjct: 472 QTLVSNLLGQSRQIWVDKTKMEQVIINILSNAIKYTEENGKISLSLFVSE-GILDIVIED 530 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 G+G+ ++E F ++ + + GTGLGL +AK +V+ + G + S KGT+ Sbjct: 531 NGIGIPKEDVEHIFDRFYRVDKGRSRQQGGTGLGLSIAKHIVEEHGGSISVRSDFGKGTV 590 Query: 804 IEIIFPLYD 812 I P+ Sbjct: 591 FTISLPIEP 599 >gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii DSM 13528] gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii DSM 13528] Length = 574 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 158/360 (43%), Gaps = 30/360 (8%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +L +IL++ G+ ++ + I+ N K+FG + I + V Sbjct: 236 QNKLEAILKSMDSGVIAVDTKYNIIMINPYAKKIFGIKKDIIGESLIDNIRDFELEDVFK 295 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + + + E+ T I + DI++ K+ + Sbjct: 296 SMEDDYREIKILWPRERELRIKTA---------YIINSSKKIGKVAVIQDITDIKKLE-- 344 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + +S F+A VSHE++TPLT+I GF+E +K ++ N I Sbjct: 345 ------------NMRSQFVANVSHELKTPLTSIKGFAETLK----YVDDVENKNKFLNII 388 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + + ++ND+L +S IES ++ E V +D+ V + +++ A +K I I Sbjct: 389 NDEADRLTRLINDILTLSHIESNSID-KVEEVKIDDIVKDVCCMMKTAAYKKNIKIE-KI 446 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + +P I AD KQ+A+N++ N+I +T +GG + I T N V L V D GVG++ Sbjct: 447 GDKVPSIWADADRFKQMAINLMDNSIKYTNNGGTVKIGTMLQDNNCV-LWVEDNGVGISK 505 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + F ++ ++ GTGLGL + K +V G + S KG+ + PL Sbjct: 506 EHQSRLFERFYRVDKARSRNQGGTGLGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIPL 565 >gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus HTA426] Length = 597 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 24/364 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ NR+G IL TN + + + Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEAMAP-L 307 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + ++ + Q+ E G T + L + + D++E + Sbjct: 308 PPQVKELFARVVREEKEQSTEVTLQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 363 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 364 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEKEKKE 407 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VNDLLD++++E+G + L +E V L + I A EK+I Sbjct: 408 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIE 467 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I D ++Q+ N++ NAI T SGG + + + + V + V+D+G Sbjct: 468 LTAEFRDRDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDG-VTIHVQDSG 526 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFS 586 Query: 806 IIFP 809 P Sbjct: 587 FYLP 590 >gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 596 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 104/580 (17%), Positives = 205/580 (35%), Gaps = 37/580 (6%) Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 ++ + L + P + N + Sbjct: 48 HQSAQLLAGQLTNFFAGDRLDPEAVDQYMERWPGEVLVLDANGVVIGATARLSNREELLG 107 Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356 F + + G+ + + PI G + K Sbjct: 108 LKFSHDDVSPAFFGNTNRRIGKEGSQRMAYEAVPITVADNVVGVI---------YLKDSL 158 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + L +L L + + + + T + Sbjct: 159 EEAYARLQDLRDILLVATLVAMASTVVLGVALARTITGPIRELTRTAALIAGGNFDQKI- 217 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + + +++ E Q +IL +DG+ +NR I+ Sbjct: 218 --PVRSGDEIGQLAEMFNRMSRQLKETMSEIQDEKSQAEAILTHMADGLMALNRARRIIR 275 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A ++F L + E S + L E + T + + Sbjct: 276 LNPAAQRMFQIQELQALGRRPGELAEG---SGLEEALEEAWDRNSALTRQIRLKDRVLQA 332 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + L + S + HDI+E ++ + S + +F+A VSHE+ Sbjct: 333 YITPLT---GEGRHSGGTVVVFHDITELERLE--------------SMRREFVANVSHEL 375 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +TPLT + + E + + G +P + + +D + +V DLL +++++ G + Sbjct: 376 KTPLTTVKSYVETLLD---GAADDPEVRDRFLRVVDGETERMARLVRDLLRLTQMDEGTL 432 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 + P + E V+E + +++ A+ KR+ + P L D ++Q+ +N+L+NA Sbjct: 433 RWNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPPALCDYDKIQQVVINLLANA 492 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I FTP+GGQI +S + V + + DTG+G+ +L + + F ++ ++ GTG Sbjct: 493 IEFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLPRIFERFYRVDKARSRSMGGTG 552 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 LGL +AK +V+ + G I S +GT + P T+ Sbjct: 553 LGLSIAKQIVELSGGAIAIASEVDRGTTVTFTLPAARTAE 592 Score = 38.5 bits (88), Expect = 5.4, Method: Composition-based stats. Identities = 27/343 (7%), Positives = 82/343 (23%), Gaps = 29/343 (8%) Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 + +++ +L + +DP + ++R W G+ + G + + A Sbjct: 50 SAQLLAGQLTNFFAGDRLDPE-AVDQYMER---WPGEVLVLDANG------VVIGATARL 99 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 S E G + F V+ + +E + Sbjct: 100 SNREELLGLK-FSHDDVSPAFFGNTNRRIGKEGSQRMAYEAVPITVADNVVGVIYLKDSL 158 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 + R+++ L L + + E + ++ Sbjct: 159 EEAYARLQDLRDILLVATLVAMASTVVLGVALARTITGPIRELTRTAALIAGGNFDQKIP 218 Query: 290 GTLQNNSKESFEYLSHRNHPSLS--AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346 + + E + + + + ++ + + + NP Sbjct: 219 VRSGDEIGQLAEMFNRMSRQLKETMSEIQDEKSQAEAILTHMADGLMALNRARRIIRLNP 278 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + + + + + G A A++ S A I+ Sbjct: 279 AAQRMFQIQELQALGRRPGE----LAEGSGLEEALEEAWDRNS--------ALTRQIRLK 326 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + + + + + + + Sbjct: 327 DR---VLQAYITPLTGEGRHSGGTVVVFHDITELERLESMRRE 366 Score = 37.7 bits (86), Expect = 8.2, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 69/240 (28%), Gaps = 18/240 (7%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + ++ + + +G R ++++ ++ L + + T ++ Sbjct: 272 RIIRLNPAAQRMFQIQELQALGRRPGELAEGSGLEE-----ALEEAWDRNSALTRQIRLK 326 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 L I P+ R G + H R + + HE+K Sbjct: 327 DRVLQAYIT----PLTGEGRHSGGT--VVVFHDITELERLE--SMRREFVANVSHELKTP 378 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 ++V+ + + P +R ++ + + + L + L +E +L Sbjct: 379 LTTVKSYVETLLDGAADDPEVR--DRFLRVVDGETERMARLVRDLLRLTQMDEGTLRWNV 436 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + + G L+ + + P + + + ++ Sbjct: 437 RPQDVGE---LVAETVGRLRVQADRKRLTVLCEVDPETPPALCDYDKIQQVVINLLANAI 493 >gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A] gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1319 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 116/624 (18%), Positives = 213/624 (34%), Gaps = 48/624 (7%) Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280 + S E + ++ + P + L ++ ++ Sbjct: 344 GAPHEGFNLLSQWRMWTDDFSRQLETDEYPISLMIKSETPFESFRVGMLGPDDERLIFDV 403 Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339 + + + R +S E + P + G Sbjct: 404 EGAVIRDEITG-ELLAGVITCRDITRIEHEISQIKAADEERFRLICETMPQLVWTAGPDG 462 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + N + T + GG T L A K R Sbjct: 463 AHDFYNSRWYSYTGLSVEASLG--GGWRTAFHPDDL--AEADKRWQNSTRTGEPYVIEYR 518 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + E + K Q E G + +T K + + QL S++ Sbjct: 519 CR--SKDGEWRWFLGRALPLKNKQTGEIEKWFGTCTDVHETMEAKLEAKRTRQQLRSVIA 576 Query: 460 ATSDGIAIINREGIILST------------NRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + + ++ + + S G V ++ L Sbjct: 577 HSRMTMFAVDPNRKVTLLEGSLIWDALSPECGSSSWFIGKDVYEVFN-NINQQLPDGQTP 635 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDI 561 L IL L+ G + + L + + D+ Sbjct: 636 AFLQPLESILGGKSPVELQDHKFGRWYRTGFQPI-LRRDPLTGNSTEDFIEGVMGFIMDV 694 Query: 562 SEWKQEKN----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 +E K + +L + A++ S KS FLA +SHEIRTP+T +IG +E++ Sbjct: 695 TELKDRERDIEAQALEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLL 754 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + + E I RS N +L ++ND+LD SKIESG++++ SL + E Sbjct: 755 DVEL----DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEV 810 Query: 672 ISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNILSNAIHFTPSGG-QIII 727 ++ A K + ++I ++ D V+QI N+ +N+I FT G ++ + Sbjct: 811 GKMLSFTAERKSLAFNYEICSDIGIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHV 870 Query: 728 STTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 S +++ EV ++DTG+G+ L++ +PF Q S + GTGLGL ++K ++ Sbjct: 871 SVEQETDDTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLL 930 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 + G+ + S +GT P Sbjct: 931 ELMKGRMALASKKDEGTTATFWIP 954 Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 15/155 (9%), Positives = 35/155 (22%), Gaps = 8/155 (5%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 E F + W G + G +G + Sbjct: 438 AADEERFRLICETMP-QLVWTAGPDGAHDFYNSRWYSYTGLSVEASLGGGWRTAFHPDDL 496 Query: 128 DPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVH 185 + + + + +G + ALP+ ++ E + FG Sbjct: 497 AEADKRWQNSTRTGEPYVIEYRCRSKDGE--WRWFLGRALPLKNKQTGEIE--KWFGTCT 552 Query: 186 VNRVD-NDPRALGKRLDKKFSHLHEIKKGHSSVEK 219 + + S + + +V+ Sbjct: 553 DVHETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDP 587 >gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 974 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 121/665 (18%), Positives = 228/665 (34%), Gaps = 56/665 (8%) Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235 G G+ + R + L +++ + + +S + Sbjct: 59 PGMDGYELCRRIRASTKLAHIPVIL-------------LTTLADPEDILKGLKSGATNFV 105 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 K L + + E + H ++ + + N Sbjct: 106 TKPYDPDLLLGRVRQLMSELDLRRAKGQKAELDIVFGGKRHHVSADARQMADLLLSTYEN 165 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354 + L N L + P V G + N ++ + + Sbjct: 166 AVIQSRALDRANKDLAEKEA-----LLRAVIASLPAQIMVLDAQGRITATNEAWEHMGRN 220 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDN-------NAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + I G L +++ + + T S+ L + Sbjct: 221 SPL----IPGVLGRTFGHIARQGLCSEDIALDSVAAAVHEVAAGTRKNFSSELCVQSDGQ 276 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + L + P + +++ ++ + L G Sbjct: 277 QRWLLLYASPMSDRGGA------VVTHMDITESKRAEQALRRSEANLAKAQHLAMLGSFE 330 Query: 468 INREGIILSTNRAVSKLFGYPVEDIL-RKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTL 525 +G + + ++ GY + + F L L + L Sbjct: 331 WLSKGDAFIWSDELYRILGYQPGSVQPGRDFLLRHLHAEDSQAFVKCLLDTARRGTPFEL 390 Query: 526 EKITLGSTKEEKL--LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + E++ S T+ D++ K + +L AK+ AE S Sbjct: 391 QFRFMRQDGVERIGLCQAEAEFDATGKLSRILGTVQDVTRQKLLERELVRAKEAAEAGSR 450 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 KS+FLA +SHEIRTPL I+G +E+ EY + + S + + +V D Sbjct: 451 VKSEFLANMSHEIRTPLNGILGMTELTLRTGLTR----EQREYLSMVKASADALATLVGD 506 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702 +LD S+IE+GK+ L + L E + A+ +++ A K + + +P + D Sbjct: 507 ILDFSRIEAGKLELERKDFRLREILQAALKPMEMQAEAKGLHLTLRIDPAVPEHLHGDAG 566 Query: 703 SVKQIALNILSNAIHFTPSGGQ-III---STTHTSNE-------EVILRVRDTGVGMTNY 751 ++Q+ LN++SNAI FTPSGG I + +T+HT + E++ V DTG+G+ Sbjct: 567 RLRQVLLNLVSNAIKFTPSGGIDIDVLPTATSHTPSGQEPDHKFELLFSVADTGIGIDTQ 626 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 E+ F Q +S + EGTGLGL +++ +V+ G ++ S +G L Sbjct: 627 LQERVFDIFTQGDSSLSRQYEGTGLGLAISRQLVELMGGAIWVESAIGQGATFNFTVALE 686 Query: 812 DTSHP 816 P Sbjct: 687 RAIAP 691 Score = 44.2 bits (103), Expect = 0.084, Method: Composition-based stats. Identities = 22/254 (8%), Positives = 53/254 (20%), Gaps = 21/254 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYA--FKMIGMRLCDVSDILHIDPNNHI-----GDLLKRQN 141 +DA G + +E N ++G ++ + + Sbjct: 201 LDAQGRITATNEAWEHMGRNSPLIPGVLGRTFGHIARQGLCSEDIALDSVAAAVHEVAAG 260 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 T ++ ++ + L A P+ R +R + Sbjct: 261 TRKNFSSELCVQSDGQQRWLLLYASPMSDRGGAVVTHM------DITESKRAEQALRRSE 314 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + S E S + + + S+ L E Sbjct: 315 ANL-AKAQHLAMLGSFEWLSKGDAFIWSDELYRILGYQPGSVQPGRDFLLRHLHAEDSQA 373 Query: 262 -------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + Q F + + + + + L + Sbjct: 374 FVKCLLDTARRGTPFELQFRFMRQDGVERIGLCQAEAEFDATGKLSRILGTVQDVTRQKL 433 Query: 315 FDEGENLTPETVDK 328 + E + Sbjct: 434 LERELVRAKEAAEA 447 >gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens] Length = 1056 Score = 331 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 106/517 (20%), Positives = 201/517 (38%), Gaps = 32/517 (6%) Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V P F+ + N + + S DA + + Sbjct: 195 SGVVLAASSPAFILKSDRAWPWNRFTGEIRRQFSDYPFANGVPERLPFDAHQSVIQLDGR 254 Query: 383 PVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 L R D + L + + + Sbjct: 255 RYSLSRVDFDWNDPSGPWTLITLGDLDTLLPGEQVLLIEGLSALVFLLLLWGGLRRLADA 314 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--- 494 + + ++E +L L++ + G+ N + N ++ GY + + + Sbjct: 315 RRHKRDVAQIEQSEQRLDMALQSGALGLWDWNLSLGTVINNDVWLQILGYSKQQMEQAFG 374 Query: 495 ---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + +T + + + L L+ ++ + KE + L + I K + Sbjct: 375 HGLERWTALVHPDDYEPVMARLKAHLNDEVGE-YRAEYRMRNKEGQWLWVLDIGKIMQRD 433 Query: 552 S-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + + DISE K + ++ ++ AE+ + KS+FL +SHEIRTPL AIIG Sbjct: 434 ANGAPTRVTGVLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMSHEIRTPLNAIIGM 493 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + + + P+ +Y IDR+ ++ +N +LD+SKIE+GK+++ L E Sbjct: 494 AHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRE 549 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ- 724 V + + LV+ A EK + ++ ++PR + D + Q+ N++ NAI FT +G Sbjct: 550 LVDDVLLLVRQRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLVDNAIKFTEAGHVC 609 Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + + V DTGVG+++ + + F Q S R G+GLGL ++K Sbjct: 610 IGVCLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISK 669 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII-------FPLYD 812 +V G ++ S P +G + PL + Sbjct: 670 KIVQLMQGDIWVKSQPGQGATFKFSVQLSLSPLPLEE 706 >gi|282899889|ref|ZP_06307850.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] gi|281195159|gb|EFA70095.1| Multi-sensor Signal Transduction Histidine Kinase [Cylindrospermopsis raciborskii CS-505] Length = 638 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 89/413 (21%), Positives = 181/413 (43%), Gaps = 30/413 (7%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473 I + E + E ++ + ++ E +L +++ +DG +I+ Sbjct: 236 IDLPLGGELGELIFSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 295 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 ++ N ++F + D++ + +L + + L E+ S R++ E L Sbjct: 296 VILVNPTARRIFAWEGTDVVGQNLLNYLPHSVQMEITRTLYEMAS-GERESAEFRILLVE 354 Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 ++ + + + ++T+ DI+ + + KS F++ Sbjct: 355 PTKRTIRILLTTVLDSQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 400 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHE+RTPL I + E + + LG E+ ++ + + +VND+LD+SK+ Sbjct: 401 NISHELRTPLFNIKTYIETLHD-YGDDLGAKERQEFLATVNHETDRLTRLVNDVLDLSKL 459 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESG+ HF+ V L +A+ + + QL A EK I + N+P ++ + + Q+ N Sbjct: 460 ESGR-TYHFDGVDLAQALEQTLRTYQLNAKEKGINLVQELTPNLPLVIGNYDLLLQVFGN 518 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQI 763 ++ NA+ FTP+GG + I V + + DTG+G+ + + F ++ Sbjct: 519 LIGNALKFTPAGGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPEDQQAIFDRFFRV 578 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 N + EGTGLGL + + +++ + + ++ S GT L+D P Sbjct: 579 EN-RVHTLEGTGLGLSIVRNIMERHHSQVHLVSEVGVGTTFWFDLALFDEDKP 630 >gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 769 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 119/529 (22%), Positives = 225/529 (42%), Gaps = 50/529 (9%) Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + + + + F+ + S + D G + L+ Sbjct: 252 ESNLRVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMH---- 307 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D+ + + + ++ ++ + + M + + GI Sbjct: 308 PDDGGLYEIARAIAKGHSGQVD-QIFRMRHAGGHYVWMRARAQVIRSNSGR-VHLIGIAM 365 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + ++ +L +E TS+ + ++ ++ N + +G P ++ Sbjct: 366 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 425 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + + + ++ + T +E+ L + + Sbjct: 426 TERSIV---NAAAARPVIERRIADADGPGYSRTTEVQLADERWLQINERRTR---DGGRV 479 Query: 556 LTMHDISEWKQEKNKLSH-----------------------------------AKKIAEK 580 DI+ K+ + +L K+ AE Sbjct: 480 SVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEA 539 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS+FLA +SHE+RTPL AI+GFSE+++NQ FGPLG+ +Y EYA I SG +L++ Sbjct: 540 ANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNV 599 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +ND+LD+SKIE+G + LH E + L + E++ + A EK I+I ++ + + AD Sbjct: 600 INDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNIVIDQRISSGL-TLTAD 658 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 R++KQ+ LN+LSNA+ FT +GG+I + T V++ + DTG+G+ L K +PF Sbjct: 659 RRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRID-GAVLVTIADTGIGIPRSALSKIGQPF 717 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 Q+ + G+GLGL +++++ + G+ I S A GT+I + P Sbjct: 718 EQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRIP 766 Score = 44.6 bits (104), Expect = 0.066, Method: Composition-based stats. Identities = 21/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + +G M + + ++H D I + + ++ Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIAKGHSG 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I S + GI + D++ Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGRV---HLIGIAMDVTEQHRLAQRYAEADQR 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + + + V + + Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIVNAAAARPVIERR 443 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ ++ + ++ + S + L Sbjct: 444 IADADGPGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503 Query: 323 PETVDKC 329 D Sbjct: 504 ATIGDLS 510 >gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 786 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 121/653 (18%), Positives = 248/653 (37%), Gaps = 57/653 (8%) Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 I+ + P + ++T + + Sbjct: 116 LIGPTGRIRAAYPRPAPSDTFASYLAEGEPIAFLGESAGAMTVNLQAGGQAVVATRRLAD 175 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E ++ ++ + T N + + ++ + DE +L Sbjct: 176 GLGEVAVLQRFEPLTANWWRMFGHHAISLSAIGLVLAGMATAYILQTQRAQAADEVCDLV 235 Query: 323 PETVDKC----PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + +D + + + + S L Y D+ G ++ LL + Sbjct: 236 KQRLDTALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPEKDLLSFGDVNALLHSEDGDL 295 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + + I+ + + + + + GI + Sbjct: 296 YSLARHLAASHATVD------HEFRIRDASGDWIWLRTRAEIVEDALDGSRHLVGIAMDV 349 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKP 496 + R M+L +EA S+ + + ++ N L ED + + Sbjct: 350 TEQRRLAEFTATADMRLRDAVEAISEAFVLWDAGNRLVLCNSKFRDLHALDSEDAVPGRR 409 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + + + + +T E + + L + ++ Y Sbjct: 410 YDEIMGRGALPPVRRGIPGA-ERGTSRTFEVELT----DGRWLQVS---ERRTKDGGYVS 461 Query: 557 TMHDISEWKQEKNKLSHAKKIAEK-----------------------------------E 581 DI+ K+ + +L +++ + Sbjct: 462 VGTDITSLKRHQEQLVASERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIA 521 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y I +SG +L ++ Sbjct: 522 NQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVI 581 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 +D+L +S+IE+ ++ L + LD A++ A++LV A K + I A + +LAD Sbjct: 582 DDILHMSRIEANRVKLVRREIGLDAAIAAAVTLVSKEAASKSVAIDIELAGTL-NVLADE 640 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 R++ QI LNI+ NA+ FTP GG++ + + N L + DTG+G+ + K +PF Sbjct: 641 RALHQILLNIIQNAVKFTPEGGRVALR-GRSCNGFAHLFIGDTGIGIPKAAISKLGRPFE 699 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 Q+ + +G+GLGL +A++ + + G I S GTL+ + P+ + Sbjct: 700 QVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGVGTLVLVRLPMPTPA 752 >gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1] Length = 584 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 101/532 (18%), Positives = 199/532 (37%), Gaps = 40/532 (7%) Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV--DKCPIPFFVYSHGN 340 + G + + +LS + + E T+ + + V S Sbjct: 87 LADGRVVGESEKPLDQLENHLSRPEVQEALSNREAVEIRFSTTIGEEMLYVAIPVVSQNQ 146 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 A + + G L + L Sbjct: 147 QVVAVIRLAASMGAIRQEQQTLNGSLFIAALIAAAFAVLIAVWITRR-----------VL 195 Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSIL 458 ++ + + E A + + + + + + ++ ++ E +L S+L Sbjct: 196 APLEKLSATAQQLAEHTGETARNEGDEIRRLQAAFQTMSEHLREQVSQLRAERQKLHSVL 255 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + DGI +++ G I N A + +FG + + +T + Sbjct: 256 KNMKDGILLVDENGKISLINPAAAGMFGIEETRAIGASLIEAVRHHT---IVELWERTRH 312 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 + Q E L E + L + + + L HD++ Sbjct: 313 SEQPQDGEVEVL---PEHRFLQVVLTPLGKETGNATLLVFHDLT--------------RE 355 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + DF++ VSHE+RTPL ++ E ++ P + ++ + + Sbjct: 356 RRVERVRRDFVSNVSHELRTPLASLKALVETLQEGAL--EDPPAAQRFLRQMEIEIDNLT 413 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 +V +LL++S+IESG + L PVS E + ++L A + ++ ++P + Sbjct: 414 QMVRELLELSRIESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVF 473 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 AD V+Q+ +N+ NA+ FTP GG+I + + + VRDTGVG+ +LE+ + Sbjct: 474 ADAERVEQVLVNLTHNAVKFTPPGGEITLGVK-QEGQAICFWVRDTGVGIPPEDLERIFE 532 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 F + + GEGTGLGL +A+ +V+ + G+ + S +G+ PL Sbjct: 533 RFYKTD--RSRSGEGTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLPL 582 Score = 37.7 bits (86), Expect = 7.7, Method: Composition-based stats. Identities = 23/230 (10%), Positives = 52/230 (22%), Gaps = 14/230 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D +G + I+ G + IG L + I + G+ Sbjct: 265 VDENGKISLINPAAAGMFGIEETRAIGASLIEAVRHHTIVELWERTR--HSEQPQDGEVE 322 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + P + + + P+ + + H + + + SH Sbjct: 323 VLP-----EHRFLQVVLTPLGKETGNAT----LLVFHDLTRERRVERVRRDFVSNVSHEL 373 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 E + + PP LR + L + L+ + Sbjct: 374 RTPLASLKALVETLQEGALEDPPAAQRFLRQMEIEIDNLTQMVRELLELSRIESGLVPLQ 433 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + E + + G + + Sbjct: 434 RRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVL 483 >gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum IAM 14863] Length = 837 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 129/673 (19%), Positives = 250/673 (37%), Gaps = 44/673 (6%) Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI-------- 210 + ++ + GF F + A + + + E Sbjct: 192 TWLTISLAAVL----VLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAPLDGELQV 247 Query: 211 ---KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 S+ + + Q+ + ++ + E + L+ ++ L Sbjct: 248 VANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERHLSRLHSL 307 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 S L +Y + + + ++A +L + + Sbjct: 308 SSKMVGSIEMDQLANLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPDLKGQFIP 367 Query: 328 KC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + P+ V + + + SV + + + P + AI V + Sbjct: 368 RSGPMARCVEQREVVV---ARYPDTQTHISV-WLRDVPVVQEVYV-PLVHTGRAIGVVAI 422 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 ++ T + A A+ + S+A+ + + Q+ ++ + + Sbjct: 423 AFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLEEE 482 Query: 447 MEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLE 502 + QL SI+ G + + G +L +N + FG ++ L + Sbjct: 483 RDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQIAA 542 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 L D + E +T L + K T D++ Sbjct: 543 VLPEDDPFPQTVRDLVHDPQAVAEGQLRLTTGY-TLQWSSAPVGKGQSRVGRLFTFQDVT 601 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E + KS+F+ VSHE+RTPLT+I+G+ ++ GPL + Sbjct: 602 E--------------LAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPL-QEQ 646 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 E+ N + R+ N + +++NDLLDI +IESG+M +H P SL V + ++ A +K Sbjct: 647 QREFLNIVARNTNRLANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQK 706 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + + +P I AD + QI N++SNA+ +T GG + +S + ++V L V Sbjct: 707 GLSFTVNVPEEVPLINADPDRLTQIIANLVSNAVKYTKEGG-VTVSVSAV-GDQVELEVA 764 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G++ + ++ + F + + GTGLGLP+ K MV+ + G + S P +G+ Sbjct: 765 DTGIGISPADQKRIFEKFYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGS 824 Query: 803 LIEIIFP-LYDTS 814 + FP L D S Sbjct: 825 RFIVSFPALKDES 837 >gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 1358 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 219/642 (34%), Gaps = 46/642 (7%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKV 240 D A+ + +++ + + +D+ + ++ V Sbjct: 596 DVLAVLDAPAIPRPRVVLADDNADMRDYIHRLLNDDFDVVAVTDGEQAWQAIRDQLPELV 655 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + L + + + Sbjct: 656 LTDVMMPKLDGFGLLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNAR 715 Query: 301 EYLSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK--S 356 E L+ A EGE ++ V + Y N + + + Sbjct: 716 ELLAKVRSQLQIAHLRREGEAQVRRVLESIRDGIMVIERDWRITYMNGAGRDIIAGRGVD 775 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + I L R+ + W + A+ Sbjct: 776 PEAIIGLSHWDAF-----PHAAGTFVEDHLRRAMEDRVMVEFENFYAPW--QRWFAVRVY 828 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIIL 475 P + + + D + + I + + E+ + I ++ + Sbjct: 829 PV-------DEGGVSIYFHDITDRKEADAALRISQERWHGLAESMPQLVWIAPGQDAGVS 881 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N + G P+ +++ + + L + M ++ + + Sbjct: 882 YLNEQWAIYTGRPIGELINEGWVDNLHPDDRQPMFDTWNAAVA--AEGLYDIEYRLRRFD 939 Query: 536 EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + + + + + T DI + A+ AE + KS+FLA Sbjct: 940 GGYRWFKTRGVPVREASGRLNGWYGTCTDI-------QDMVEARVAAESANRAKSEFLAN 992 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 +SHEIRTPL AI+G + ++ N + P + + Y + S + ++ ++ND+LD+++IE Sbjct: 993 MSHEIRTPLNAIVGLTHIMLNYKTDPASHGK---YLQTMKDSADTLMQLINDVLDLARIE 1049 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALN 710 + ++ L P L E V E + + ++ EK + F + + D+ +KQI +N Sbjct: 1050 ADRVELEMAPCPLHEVVRECLGITEVKGAEKGLACGLDFGLPHGTVVETDVLRLKQILMN 1109 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 +LSNA+ FT +G +I + + V +RVRDTGVG+ ++E F Q S Sbjct: 1110 LLSNAVKFTQTG-RIDVEVSAAPARSELLPVTIRVRDTGVGIAADKIEHIFAQFTQEDAS 1168 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 R G+GLGL +++ + + G+ + S KGT+ + Sbjct: 1169 ITRRFGGSGLGLAISRRLSEMLGGRLTVESEVGKGTVFSLSL 1210 Score = 232 bits (591), Expect = 3e-58, Method: Composition-based stats. Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 5/255 (1%) Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 Q + + K+ F + VSHE R T + ++ P PR E Sbjct: 318 QAYEDERSRAEALAELDRAKTAFFSNVSHEFR---TPLTLLLAPLEEVLADPATTPRDRE 374 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + +R+ +L +VN LLD S+IE+G+ F+PV+L +E S + + + Sbjct: 375 RLDVANRNALRLLKLVNVLLDFSRIEAGRTQAAFQPVNLACYTAELASNFRSAMDRAGLA 434 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + + AD+ +++ LN++SNA +T G ++ IS + ++ +L VRDTG Sbjct: 435 YKLDIQPLSQPVYADVEMWEKVVLNLISNAFKYTLEG-EVEISLS-EADGHAVLAVRDTG 492 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +E F ++ EG+G+GL L + +V + G+ ++ S +G+ Sbjct: 493 PGIPEHERAHVFTRFHRVEGVTGRSIEGSGIGLALVRELVRLHGGEVWLKSETGRGSTFF 552 Query: 806 IIFPLYDTSHPHDCI 820 + PL P D + Sbjct: 553 VRLPLGTAHLPADQV 567 Score = 46.6 bits (109), Expect = 0.020, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 66/272 (24%), Gaps = 31/272 (11%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153 + ++E+ G ++I D P + + + + + L + Sbjct: 880 VSYLNEQWAIYTGRPIGELINEGWVDNLHPDDRQPMFDTWNAAVAAEGLYDIEYRLRRFD 939 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKK 212 G Y +P+ + +G+ +G + A K L + Sbjct: 940 GG--YRWFKTRGVPVREASGRLNGW--YGTCTDIQDMVEARVAAESANRAKSEFLANMSH 995 Query: 213 GHSSVEKEKYDIFS--------QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + S +L+ + + L + + Sbjct: 996 EIRTPLNAIVGLTHIMLNYKTDPASHGKYLQTMKDSADTLMQLINDVLDLARIEADRVEL 1055 Query: 265 EESSLPEQEDFHT-----------------INLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 E + P E ++ + + LS+ Sbjct: 1056 EMAPCPLHEVVRECLGITEVKGAEKGLACGLDFGLPHGTVVETDVLRLKQILMNLLSNAV 1115 Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + + D + P + P+ V G Sbjct: 1116 KFTQTGRIDVEVSAAPARSELLPVTIRVRDTG 1147 Score = 42.3 bits (98), Expect = 0.35, Method: Composition-based stats. Identities = 36/387 (9%), Positives = 78/387 (20%), Gaps = 29/387 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 ++ IG M+G V + D + + + Sbjct: 59 GRDLVFLY-NDPYKSIIGGKHPYMLGQPTSVVWAEIWEDIGPMLATAMGGSEGTYVEEQL 117 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G + PI + G +RV D + +R Sbjct: 118 LIMERNGYPEETYYTFSYSPIPDDDGTPGGIICANTEDTHRVIGDRQVALRRDLAAALTQ 177 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE---------YYAHKDDVLKTEK 258 ++ + P + + + + A Sbjct: 178 ARTVSQACTLAMGALGHNTHDLPFALIYVPDGEDLVLAGTSGIARGHAAAPARLAADKSI 237 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 +PL S +S L + L + + Y + Sbjct: 238 WPLSDSGDSRLIADLRGRLDLPSGAWPVSPDRAVMLPIATGGENAGVLITGLNPYRLYDE 297 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + + AN + + + T + Sbjct: 298 DYKGFMTLVTGQIAAGI----------ANAQAYED-ERSRAEALAELDRAKTAFFSNVSH 346 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + ++L A T +RE + + IE Sbjct: 347 EFRTPLTLLLA----PLEEVLADPATTPRDRERLDVANRNALRLLKLVNVLLDFSRIEAG 402 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD 463 + +L S + D Sbjct: 403 RTQAAFQPVNLACYTAELASNFRSAMD 429 >gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens DM4] Length = 646 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V A D E S+ + + ++ + Sbjct: 3 VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 57 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + A L V +V + + L Sbjct: 58 LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 117 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 A L + +S + + A + L +L Sbjct: 118 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAIALSGYLPVGALALDWPNAIVM 175 Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 E + + +M+ + +L A D + + G +L + Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536 + ++ G + + + ++++ + T+ Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 295 Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + ++ S D+SE ++ +L A+ AE+ K+ FL Sbjct: 296 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE+RTPL AIIGFS+V+ + L R EYA I +SG +LD+VN LLDIS+ Sbjct: 356 ATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I G + EPV ++ + L++L A+ I + ++ ++AD R+ +Q+ + Sbjct: 416 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARACRQMLI 475 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FTP GG++ + + + V D G+G+T +L + PF Q+ Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 534 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + + + + G + S P KGT + + PL Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+G + E S + +G A ++ G L D I + Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 285 Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204 ++ + A +G G + R + Sbjct: 286 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263 E+K + + + + + SL+ + + + + L Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLL 404 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315 ++L + + + + L + + S L+ P+ A Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALV 464 Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 + ++ F G + Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497 >gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus WK1] gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus WK1] Length = 604 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 166/390 (42%), Gaps = 25/390 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R+G I+ N A Sbjct: 235 DEIGQLALSFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRKGRIILINDAALN 294 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L P L + + E +L L + ++ L + Sbjct: 295 ILNVSRETVLSAPIVTVLGLDEQYTFETLIEERETLILDFSTDEEMYILRAS-----LSV 349 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ + + +HDI+E ++ + +F+A VSHE+RTPLT + Sbjct: 350 IQKEKGLVNGLIVVLHDITEHEKI--------------DRDRREFVANVSHELRTPLTTM 395 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + ++ +VNDLL +SK++S L V Sbjct: 396 RSYLEALADGAWR--DEEIAPRFIEVTQNETERMIRLVNDLLQLSKLDSKDYKLKKTRVH 453 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + I + ++ + F + + D + Q+ NI+SNA+ ++P GG Sbjct: 454 FIPYFHKVIDRFE-LTKKENVSFVRDFPDEKIIVYMDEDKITQVFDNIISNALKYSPQGG 512 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I + + + V+D GVG+ +L K + F ++ ++ + GTGLGL +AK Sbjct: 513 TITFRVKKK-GDYIEVSVKDEGVGIPKSDLSKIFERFYRVDKARSRKLGGTGLGLAIAKE 571 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 +V A+ G+ + S KGT I P+ Sbjct: 572 VVVAHGGRIWAESQERKGTTIYFTLPIEQQ 601 Score = 40.4 bits (93), Expect = 1.3, Method: Composition-based stats. Identities = 18/161 (11%), Positives = 38/161 (23%), Gaps = 12/161 (7%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAG--- 364 A + + G + N + L + + Sbjct: 252 QEAQATTEGERRKLESVLTHMTDGVIATDRKGRIILINDAALNILNVSRETVLSAPIVTV 311 Query: 365 -GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 GL L + + +D A L IQ + + + + Sbjct: 312 LGLDEQYTFETLIEERETLILDFS-TDEEMYILRASLSVIQKEKGLVNGLIVVLHDITEH 370 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + ++ + + S LEA +DG Sbjct: 371 EKIDRDRREFVANVSH------ELRTPLTTMRSYLEALADG 405 >gi|73748783|ref|YP_308022.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73660499|emb|CAI83106.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1262 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 110/750 (14%), Positives = 243/750 (32%), Gaps = 55/750 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW- 143 W D L S+ + G A +++ + + P + + +L+K+ + Sbjct: 406 WEFDLANGLVHPSDGAREIYGLKA-EILTIPFVQKVPVPEDRPAMDKALNNLIKQNIPYD 464 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 P +G LY+ ++ + R FG + L + + + Sbjct: 465 IEFKIKRPTDGAILYI----HSIAEFDSKRNVV----FGTIQDITKRKQAEELLRESEAR 516 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAH---KDDVLKTEK 258 F + +++ + ++ +SL Sbjct: 517 FRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTSLKVSDITNSDDFAKDIIHL 576 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L E S + + + + + +++ + YL+ + ++ Sbjct: 577 NRLKNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLLYYLAMIVDITTRKAAEDA 636 Query: 319 ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + G L AN + + Y + + K+ Sbjct: 637 LQKYKLIAEDSRDIILFMNKETGQLLEANSAAVKAYGYSREQLL-----------SMKIQ 685 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + A + +L L ++ + I + Sbjct: 686 NLRAPQARVLTARQLNQAHIRGMLFETFHQSKDGRVFPVEVSSRGADIEGTTTLINIIRD 745 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVED 491 + + + + + + + +D I + G + N A + GY ++ Sbjct: 746 TTERKQAENALNESLQNYQVLFNSVTDAILVHQPAADYSAGKFIEVNDAALAMLGYSRKE 805 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549 +L+ + + ++ + I ++ + TK K + + + + K Sbjct: 806 LLQITPMDLMSKGKYP-VSAFADNIRYIEKNTEVVSEFAMETKSGKTIPVELHSRMFKFG 864 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607 DISE K+ + + + +E S + A ++HEI PLT +IGF+ Sbjct: 865 GKRTVITLARDISERKKLEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFA 924 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + P ++ I+ V++IV +L ++ + V++ E Sbjct: 925 SILMEREDLPAD---VMDELQIINSGSQRVVEIVKRMLTFAR----QAKPVRSSVNITEL 977 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQ 724 + + L I + + ++P + D ++Q+ LN++ NA + G Sbjct: 978 IDSTLDLRSYVLKTANIEVVRHYEPDLPLLTVDSGQIQQVILNLILNAEYSMKKAHEKGI 1037 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + IS E V + RD G+GM+ L K +PF + GEGTGLGL L+ + Sbjct: 1038 LTISVKKE-GEWVRMSFRDNGLGMSAETLGKLFQPFFTTKDP----GEGTGLGLSLSHGI 1092 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + G S +G I P+ + Sbjct: 1093 ILEHEGTIRGESILGEGAEFTIELPIKPSD 1122 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 51/507 (10%), Positives = 137/507 (27%), Gaps = 31/507 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G E+++ +G ++IG + +D + K T + Sbjct: 154 LDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTADTEFY 213 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G+ V + + N F + + + + +K+ L Sbjct: 214 MNRKDGS--VVLMAFSGKIACDANGNFK--QTHCALQDITQRHLADEAIRESQRKYQTLF 269 Query: 209 EIKKGHSSV------EKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKY 259 E + V E + L ++ S + H L +++ Sbjct: 270 ESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSSGLLSKEI 329 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + + + + F LQ ++ ++ Sbjct: 330 TDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAHDITIRKKIARELEQ 389 Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + ++ + N L + + + ++ + + Sbjct: 390 SHRRLVKAEKVAGFGYWEFDLANGLVHPSDGAREIYG------LKAEILTIPFVQKVPVP 443 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ L + I + L + I + + G + Sbjct: 444 EDRPAMDKALNNLIKQNIPYDIEFKIKRPTDGAILYIHSIAEFDSKRNV----VFGTIQD 499 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + + S + + G AI + N ++ GY + Sbjct: 500 ITKRKQAEELLRESEARFRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTSLK 559 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 + + + +L + E K + + + + + Sbjct: 560 VSDITNSDDFAKDIIHLNRL-KNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLL 618 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579 Y + DI+ K ++ L K IAE Sbjct: 619 YYLAMIVDITTRKAAEDALQKYKLIAE 645 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 46/514 (8%), Positives = 132/514 (25%), Gaps = 51/514 (9%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +DA+ G + + + L +G +++G L ++ I + +L+ + + Sbjct: 29 LDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKDIASSRKAFAVLQEKEYIRYED 88 Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G V + + L ++ ++++ Sbjct: 89 LPLKTKNGQIQQVEFVSNVYWVGDEK------IIQCNIRDITDRKRAEELLRKTEERYRE 142 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 ++ + + +V + D + + Sbjct: 143 FYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVF 202 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGE 319 + + + E + + G + ++ +F E + Sbjct: 203 KATGTADTEFYMNRKDGSVVLMAFSGKIACDANGNFKQTHCALQDITQRHLADEAIRESQ 262 Query: 320 NLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDI----------EIA 363 + FV N + Y + + + Sbjct: 263 RKYQTLFESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSS 322 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G LS + + + L D I+ H ++ + Sbjct: 323 GLLSKEITDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAH------- 375 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + R++E +L + G + ++ + + Sbjct: 376 ------------DITIRKKIARELEQSHRRLVKAEKVAGFGYWEFDLANGLVHPSDGARE 423 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 ++G E + M+ L ++ ++ +E + + +L + Sbjct: 424 IYGLKAEILTIPFVQKVPVPEDRPAMDKALNNLIKQNIPYDIEFK-IKRPTDGAILYIHS 482 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 I + + T+ DI++ KQ + L ++ Sbjct: 483 IAEFDSKRNVVFGTIQDITKRKQAEELLRESEAR 516 Score = 101 bits (252), Expect = 5e-19, Method: Composition-based stats. Identities = 47/402 (11%), Positives = 112/402 (27%), Gaps = 25/402 (6%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKD 251 + + ++ L E + + + +P + L E KD Sbjct: 8 LEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKD 67 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHP 309 + + +L +E E T N + + + + Sbjct: 68 IASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEFVSNVYWVGDEKIIQCNIRDITDRK 127 Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E E K PI + + S G N +L YK + I G Sbjct: 128 RAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGE-- 185 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 P D + + + ++ + + M F + Sbjct: 186 -FLQPDQVDLFRKRFPVFKAT--GTADTEFYMNR---KDGSVVLMAFSGKIACDANGNFK 239 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILSTNRAVSK 483 + + + + + ++ E+ + + + N Sbjct: 240 QTHCALQDITQRHLADEAIRESQRKYQTLFESIGEAAFVCYINNREWADGFVELNAVACD 299 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + GY E++L+ + +++ +T+ L ++ + + K+ +S+ + Sbjct: 300 MLGYTHEELLKISARNLFFHPSSGLLSKEITD--ELYAQKMVTRECNLPHKDGHNISVEV 357 Query: 544 I--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 I L + HDI+ K+ +L + + K Sbjct: 358 TFHIFDLQGRPAVLILAHDITIRKKIARELEQSHRRLVKAEK 399 Score = 92.0 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 38/292 (13%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + E + + G + ANP L + Y + + + Sbjct: 5 RLGLEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGI 64 Query: 370 LDAPKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 S + + L + + + W + + Sbjct: 65 FKDIASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEF-VSNVYWVGDEKIIQCN---- 119 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + D + + + + + + G ++ EG L N+ Sbjct: 120 --------------IRDITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQ 165 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 GY E+++ F FL+ + + + + + K+ ++ Sbjct: 166 VWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTA---DTEFYMNRKDGSVV 222 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + K ++ + DI++ + +++ + + Sbjct: 223 LMAFSGKIACDANGNFKQTHCALQDITQRHLADEAIRESQRKYQTLFESIGE 274 >gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 572 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 108/584 (18%), Positives = 214/584 (36%), Gaps = 64/584 (10%) Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337 + L +S +P L E +D+ F+ Sbjct: 2 PAPADPSPRADERLTRLLGFGEHSVSKSYYPELRRRL-EELERFRSLLDQTGDAIFLVDV 60 Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 G + A + + + + G L L L + ++ L+ A Sbjct: 61 ATGRIADAAGAAGAMLR-------QERGDLRGLPFEHFLPPDAVLRLRGLF--SGDFAAG 111 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + E ++ + Q + + + + N+ + + Sbjct: 112 RVETSLSRPGDEAGGSLPVEMTFRLAQGEAGRVAVIVARDVTERKKNEEALRRAEERYRG 171 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 I+E ++GI G +++ N A++ + GY D L + +++ + + + Sbjct: 172 IVENAAEGIFQSTLSGRLMNANPALAAILGYANPDDLLRHVKSVVDEVVAAPEDRHRIRS 231 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572 + TK + I +++ + ++ D++ KQ + L Sbjct: 232 ELDRYDEVKNLEVQLITKSGAHIWGLINARRIRGEEGTPERFDGSVQDVTIRKQAEQTLI 291 Query: 573 HAKKIAEKESSHK--------------------------------SDFLARVSHEIRTPL 600 E+ + + SDFL+ VSHEIRTPL Sbjct: 292 RYHDELEQRVAERTAELTRINERLVHEVTIRKRAEEAAEAANRAKSDFLSMVSHEIRTPL 351 Query: 601 TAIIGFSEVIK------------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 T+++GF+ +IK + L + + + I G + ++ND+LD++ Sbjct: 352 TSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQDNLDIIVAEGERLKHLINDVLDLA 411 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 K+E+GKM EPV E V ++ I++ T +P + D + Q+ Sbjct: 412 KLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIVLDTRIEGRLPLVRGDRDRLIQVL 471 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +N++SNAI FT G ++ + +++ V DTG+G+ E K + F QI + Sbjct: 472 VNLVSNAIKFTDQG---YVACRARAQGNTIVIEVSDTGIGIPESEQGKVFEKFNQIGGTL 528 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 + +GTGLGL + K +V+++ G+ + S P G+ P+ Sbjct: 529 TNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTFTLPIA 572 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 6/138 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 + G L + L +G + + V D + P + I L R + Sbjct: 180 IFQSTLSGRLMNANPALAAILGYANPDDLLRHVKSVVDEVVAAPEDRHRIRSELDRYDEV 239 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-KRLDK 202 I + ++ + A I F G V + + D+ Sbjct: 240 KNLEVQL-ITKSGAHIWGLINARRIRGEEGTPERFDG--SVQDVTIRKQAEQTLIRYHDE 296 Query: 203 KFSHLHEIKKGHSSVEKE 220 + E + + + Sbjct: 297 LEQRVAERTAELTRINER 314 >gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 646 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V A D E S+ + + ++ + Sbjct: 3 VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 57 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + A L V +V + + L Sbjct: 58 LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 117 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 A L + +S + + A + L +L Sbjct: 118 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAVALSGYLPVGALALDWPNAIVM 175 Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 E + + +M+ + +L A D + + G +L + Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536 + ++ G + + + ++++ + T+ Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 295 Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + ++ S D+SE ++ +L A+ AE+ K+ FL Sbjct: 296 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE+RTPL AIIGFS+V+ + L R EYA I +SG +LD+VN LLDIS+ Sbjct: 356 ATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I G + EPV ++ + L++L A+ I + ++ ++AD R+ +Q+ + Sbjct: 416 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARACRQMLI 475 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FTP GG++ + + + V D G+G+T +L + PF Q+ Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 534 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + + + + G + S P KGT + + PL Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+G + E S + +G A ++ G L D I + Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 285 Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204 ++ + A +G G + R + Sbjct: 286 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263 E+K + + + + + SL+ + + + + L Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLL 404 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315 ++L + + + + L + + S L+ P+ A Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALV 464 Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 + ++ F G + Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497 >gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13] gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str. 13] Length = 571 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%) Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++EI + + L +IL++ G+ +R+ +L N K+FG E I K Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 ++ + E + + K+L +R I P Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ K+ + + +S F+A +SHE++TPLT+I GF+E ++ Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++ + ID + + ++ D+L + +IE + + E ++DE + + L+ Sbjct: 378 YVEDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTI-LEEFNVDEEIEKVYMLL 436 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + I +N ++ D KQ+ LN++SN++ +T GG++ + ++ + Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +IL + D G+G++ +L + + F ++ ++ GTGLGL + K +V G+ + Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554 Query: 796 STPAKGTLIEIIFPL 810 S GT I I P+ Sbjct: 555 SELGVGTKIVITIPI 569 >gi|323495069|ref|ZP_08100158.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546] gi|323310726|gb|EGA63901.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG 20546] Length = 1039 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 120/634 (18%), Positives = 223/634 (35%), Gaps = 40/634 (6%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++ L + V S + +T S Sbjct: 115 SSTDYLNHQFDGQRWLKSGVFDNDRLSPLFTRETVISTPSPDPFLNKPTETLVSQWFVS- 173 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + L+ + L S A D+ + + Sbjct: 174 -PIIADDKVIGWALLSFDWQASMLELLNTAYARLETA---HYPISQIAVTDDVSKYSQAS 229 Query: 326 VDKCPIPFFVYSHGNLFYANPS-------FLLLTKYKSVDDIEIAGGL-------STLLD 371 V + P + + + F T K +DDI+ A + Sbjct: 230 VGRVPPNIATLDASKNMFFSQANYLITVTFNAATALKGLDDIKQAMMIIFAIAAALLTFS 289 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL--AMTFIPFEKANQFPENMP 429 + IKP+ +++ H + + + +T I + Sbjct: 290 MWFTLRASIIKPIDSLTKHILSLSSEGETHRLPKSNNREMNSIVTAINQLLQQLQNNTIS 349 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 ++ E R +++ + +L +IL+ +DGI I+++G ILS N+A +FGY Sbjct: 350 LQRLDEEIDLKRQSEQTQTLLSQKLEAILDTAADGIVTIDKQGRILSFNQAAQMMFGYTE 409 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLD---------LRQTLEKITLGSTKEEKLLS 540 ++ + P V + + ++ + L+ L + K+ Sbjct: 410 QEAIGMPVEVLMPATEAARHQGHIEKYLATGKGKIIGVTDQDGRLGRELQAINKQGHTFP 469 Query: 541 LRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598 + + I ++ + + DIS KQ + L AK+ AE+ + KS+FLA +SHEIRT Sbjct: 470 ILLSIARVETADGILFSGLIKDISIQKQAELALITAKEQAEQAAKSKSEFLAVMSHEIRT 529 Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 P+ IIG + + N A S +L ++ND+LD SKI++ K+ L Sbjct: 530 PMNGIIG----MLDLLLENDLNNSQSHQAYLAHSSALSLLALLNDILDFSKIDANKLELE 585 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIH 717 + +L + E + + I +L D ++QI N++SNA+ Sbjct: 586 QQHFNLRHMLGEFAESMAASLTNPNVEIILDTIEVEHSMVLGDSTRIRQIFANLVSNALK 645 Query: 718 FTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 FT G I + L ++D+G+G+ + + F Q+ S R GT Sbjct: 646 FTERGEVVITAKLSEHDANTWRLDGSIKDSGIGIPSSRINSLFDKFSQVDASTTRRYGGT 705 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GLGL + K + G + S G+ Sbjct: 706 GLGLAIVKKLCQIMHGDVDVTSEVGMGSEFSFHI 739 Score = 41.9 bits (97), Expect = 0.45, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 20/150 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQ------ 140 ID G + ++ G + IGM + +V HI L Sbjct: 388 IDKQGRILSFNQAAQMMFGYTEQEAIGMPV-EVLMPATEAARHQGHIEKYLATGKGKIIG 446 Query: 141 -----NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + +G PI L+ + + + G G++ + Sbjct: 447 VTDQDGRLGRELQAINKQGHTF--PILLSIARVETAD----GILFSGLIKDISIQKQAEL 500 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 ++ + K +V + Sbjct: 501 ALITAKEQAEQAAKSKSEFLAVMSHEIRTP 530 >gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 818 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 91/261 (34%), Positives = 148/261 (56%), Gaps = 7/261 (2%) Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 E + + L A ++ + KS+FLA +SHE+RTPL AIIGF+EV+K++ G L N Sbjct: 280 EQRITEKTEHLQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLKDKLCGEL-N 338 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ I SG +L ++ND+LD+SKIE+GKM L +E + +A+ + ++++ A Sbjct: 339 AEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDVYTILKGLAK 398 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K++ ++T ++ I AD KQI N+LSN+I FTP G I + ++ + Sbjct: 399 KKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAIVD-GKMQVS 457 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D+G+G+ + EK K F Q +S + EGTGLGL L + +V+ + GK ++ S K Sbjct: 458 VSDSGIGIKPEDREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGKIWLKSEYGK 517 Query: 801 GTLIEIIFPLYDTS---HPHD 818 G+ P+ + HP D Sbjct: 518 GSTFYFTIPVTKSQRILHPED 538 >gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326] gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326] Length = 1098 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 101/587 (17%), Positives = 201/587 (34%), Gaps = 59/587 (10%) Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------- 329 ++ + + +++S Y+ + + E + + + Sbjct: 103 AVDGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVTQIHLVREELRHSNAQLSQLVSSQSRK 162 Query: 330 ------PIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDA 372 I + L N + L L I L D Sbjct: 163 LHQHDTQIGVMFEQSLDNMLLLDDDLTLIDINDAALKLFGRSKQKIIGLSVSSLLNDFDD 222 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + A + T + + + + Sbjct: 223 QVIKASLATAEMHREVPLDTMLKVKNHIGLSSLSGSVRYITIRNHDK----------IVL 272 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATS-------DGIAIINREGIILSTNRAVSKLF 485 + + ++++ +L +L + GI + L+ + + +++ Sbjct: 273 TLRDVHSQHLVQKELRRSQSELERVLRNLNLATQAGGIGIWSWDFTTNELAWDERMYEMY 332 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G + + + + ++ ++ Sbjct: 333 GVDPNNCENNYAMWQERVLDEDIYPAEQALNDARERLSQFNAEFRIQLPSGEIRWIKAAA 392 Query: 546 KKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 L + DI++ K + H + A S KS FLA +SHEIRTP+ Sbjct: 393 DVLFDHNGENPIGMGGVNIDITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPM 452 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++G ++ N I S +L I+ND+LD SKIE+G+M+L Sbjct: 453 NGVVGMLSLLSETEL----NTEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESV 508 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719 PV L + + + ++ L A+ K I + ++ N+P++ ++D + Q+ LNI+ NA+ FT Sbjct: 509 PVELQKLIERTLDVLCLQASNKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFT 568 Query: 720 PSG----GQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 S G++ +S T +E + + V D G+GMT ++++ F Q S Sbjct: 569 DSNDDVKGKVWVSATLNDHEIAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYG 628 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818 GTGLGL + ++++ G + S G+ I P + PHD Sbjct: 629 GTGLGLSITNSLLELMGGNIKVDSHHGSGSRFYIELPFIPAEDEPHD 675 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 82/283 (28%), Gaps = 34/283 (12%) Query: 325 TVDKCPIPFFVYSH----GNLFYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSDN 378 +D ++ +FYANPSF+ K I ++ S + P + Sbjct: 27 ILDLLSEGLIIFDGQPDSHAIFYANPSFVDYYKTPLNQIIGCKVSDFFSRYTETPFIQAL 86 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L IA ++ + ++ + + Sbjct: 87 LNSQDAHLSIPLNVKIAV----------DGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVT 136 Query: 439 DTRINKRKMEIEVMQLCSILEA---------TSDGIAI---------INREGIILSTNRA 480 + + ++ QL ++ + T G+ ++ + ++ N A Sbjct: 137 QIHLVREELRHSNAQLSQLVSSQSRKLHQHDTQIGVMFEQSLDNMLLLDDDLTLIDINDA 196 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 KLFG + I+ + L V+ L + + + LS Sbjct: 197 ALKLFGRSKQKIIGLSVSSLLNDFDDQVIKASLATAEMHREVPLDTMLKVKNHIGLSSLS 256 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + + LT+ D+ + +L ++ E+ Sbjct: 257 GSVRYITIRNHDKIVLTLRDVHSQHLVQKELRRSQSELERVLR 299 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 8/145 (5%) Query: 456 SILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 SIL+ S+G+ I + + I N + + P+ I+ + F + T + Sbjct: 26 SILDLLSEGLIIFDGQPDSHAIFYANPSFVDYYKTPLNQIIGCKVSDFFSRYTETPFIQA 85 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNK 570 L L L + E+K LSL + + + D+++ + + Sbjct: 86 LLNSQDAHLSIPLNVK-IAVDGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVTQIHLVREE 144 Query: 571 LSHAKKIAEKESSHKSDFLARVSHE 595 L H+ + S +S L + H+ Sbjct: 145 LRHSNAQLSQLVSSQSRKLHQ--HD 167 >gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena CCY9414] Length = 1287 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 129/828 (15%), Positives = 263/828 (31%), Gaps = 120/828 (14%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNH-IGDLLKR--QNTWY 144 D +G + E ++ + IG ++ G +++ H+ + I + Sbjct: 329 DVYGGIHEANDAFLQMIGYTREDLLTGKLNWRNITPPEHVYSDKQGIAEAQGNPNGACTP 388 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G +P+ + + + NRE + + +L+K Sbjct: 389 YEKEYIHKDGR--RIPVLVGYVLV-GENRE----ESVVFILDLSERKQAKQQIVQLNKDL 441 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + V I P L + VSS + + Sbjct: 442 QRRIAELQTLFQVIPIGIGIAEDAECKTIRANPCLAQQLGVSSDENVSLSAPSAERPTSF 501 Query: 260 PLLTSEESSLPEQEDFH-----------------TINLNQYTKKQYFGTLQNNSKESFEY 302 + LPE+ N ++ L + +S Sbjct: 502 KVYREGRELLPEELPMQYSAAHGVEMLNCELDIVHENGKVVKLLEHVAPLFDEEGDSRGS 561 Query: 303 LSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKS 356 + + +E + + ++ P+P G + +AN + L + Sbjct: 562 VGAFLDITERKQVEETIQNQQKWLEDVLNMMPMPLLFIEPGTGRVIFANRAVDDLAGGEF 621 Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTF 415 I + + + + R R + W+ E+ ++ Sbjct: 622 PKGIPVEEYHTAYYCTDMAGNRIPNDQIPGARIARGE---RLDGLEMDWHTKESVRSIRI 678 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI---------- 465 + + + ++ + +L + SD + Sbjct: 679 FSDTLPAMHGHPATCVSAFQDITNLKEIEKARTLNYRRLQLLFNTASDLLSSQQPLALIH 738 Query: 466 ---------AIINREGIILSTNRAVSK---------LFGYPVEDI-------LRKPFTVF 500 ++ + N G E + Sbjct: 739 SFYQKLAEQIGLD-----VYFNYLAEDHSQVMHLVSFTGVSEEIAKEYECLKFGQSVCGI 793 Query: 501 LEQNTPSVMNHYLTE--------ILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKK-LPF 550 + Q + + + I SL + + S + L + Sbjct: 794 VAQERHPIYIENVQQSTDPKTELIRSLGITAYYGYPLIASARLLGTLCFGSRSCSRFTEN 853 Query: 551 SSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + D E L + + + K +FLA +SHE+R+PL AI+G+ Sbjct: 854 QRGMMQAVSDQIAIAMERSSLIASLQQQTEQLREANRMKDEFLAILSHELRSPLNAILGW 913 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++++++++ + + + I+R+ + +V DLLDIS++ GK++LH +L Sbjct: 914 AQLLRSRKLSDI---QIAKAMETIERNARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVP 970 Query: 667 AVSEAISLVQLYANEKRILIRTSF--ANNIPR------ILADLRSVKQIALNILSNAIHF 718 + A+ V L A K I +R S + +P+ + D+ ++QI N+LSNAI F Sbjct: 971 LIESAVETVHLAAQAKEIDLRISLIPSPEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKF 1030 Query: 719 TPSGGQIIIST--THTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 TP+GG+I I + +E ++V DTG+G+ L F Q +S Sbjct: 1031 TPTGGRIEIRLCQSVEDDEKLARTITSYAQIQVIDTGIGIKPEFLPYVFDRFRQADSSST 1090 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815 G GLGL + + +V+ + G + S +G + PL S Sbjct: 1091 RSYGGLGLGLAIVRHLVELHGGIISVDSQGENEGATFTVKLPLLLESQ 1138 Score = 90.9 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 52/484 (10%), Positives = 131/484 (27%), Gaps = 38/484 (7%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKN 238 I + R ++ + + ++K + I + R Sbjct: 293 ITRLCRQHDEAQKKLRAYEEKLRSFVDANVIGIKFGDVYGGIHEANDAFLQMIGYTREDL 352 Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQN 294 L + + ++K + ++ + P ++++ + + + + Sbjct: 353 LTGKLNWRNITPPEHVYSDKQGIAEAQGNPNGACTPYEKEYIHKDGRRIPVLVGYVLVGE 412 Query: 295 NSKESFEYLSHRNHPSLSAY--------FDEGENLTPETVDKCPIPFFVYSHGN--LFYA 344 N +ES ++ + + PI + A Sbjct: 413 NREESVVFILDLSERKQAKQQIVQLNKDLQRRIAELQTLFQVIPIGIGIAEDAECKTIRA 472 Query: 345 NPSFLLLTKYKSVDDI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 NP S +++ + T + + + + S + Sbjct: 473 NPCLAQQLGVSSDENVSLSAPSAERPTSFKVYREGRELLPEELPMQYSAAHGVEMLNCEL 532 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 I + + ++ ++ G + + + + ++ + L +L Sbjct: 533 DIVHENGKVVKLLEHVAPLFDEEGDSRGSVGAFLDITERKQVEETIQNQQKWLEDVLNMM 592 Query: 462 SDGIAIINR-EGIILSTNRAVSKLF------GYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 + I G ++ NRAV L G PVE+ + + N Sbjct: 593 PMPLLFIEPGTGRVIFANRAVDDLAGGEFPKGIPVEEYHTAYYCTDMAGNRIPNDQIPGA 652 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSH 573 I + LE + + + ++ DI+ K+ + + Sbjct: 653 RIARGERLDGLEMDWHTKESVRSIRIFSDTLPAMHGHPATCVSAFQDITNLKEIEKARTL 712 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + + + SD L+ + PL I F + + Q +G Y Y Sbjct: 713 NYRRLQLLFNTASDLLSS-----QQPLALIHSFYQKLAEQ----IGLDVYFNYLAEDHSQ 763 Query: 634 GNLV 637 + Sbjct: 764 VMHL 767 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 3/164 (1%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 I ++K+ +L S ++A GI + G I N A ++ GY ED Sbjct: 292 VITRLCRQHDEAQKKLRAYEEKLRSFVDANVIGIKFGDVYGGIHEANDAFLQMIGYTRED 351 Query: 492 IL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +L + + + E K+ + + + + + Sbjct: 352 LLTGKLNWRNITPPEHVYSDKQGIAEAQGNPNGACTPYEKEYIHKDGRRIPVLVGYVLVG 411 Query: 550 FSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + S+ D+SE KQ K ++ K ++ + + Sbjct: 412 ENREESVVFILDLSERKQAKQQIVQLNKDLQRRIAELQTLFQVI 455 >gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28] gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum] Length = 1966 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 124/783 (15%), Positives = 227/783 (28%), Gaps = 81/783 (10%) Query: 98 ISEELPKT-IGNYAFKMIG---MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 S +G G + + P D GK Sbjct: 763 ASPGWEGVTLGMTGPHGSGSGSRSWNNSAASTPASPGMERQDEYFGPPPRGGKIFSRQNS 822 Query: 154 G-----TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + L I + L + + +G G R + + S Sbjct: 823 GNVPTLSTLRARIPMVELKVRIEDEGTTGSSGTAKGK-RRESSHAAQRRRADMGMGSSKF 881 Query: 209 EIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + K P L+ Sbjct: 882 PNHTDLRRGTNPNKTPTQHLGAIAAEGASPPVSPGPEIAHQHRRGRGVPRRKRPGLSPGY 941 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPE 324 + S L+ P L Sbjct: 942 PHTLLHSYGADYAATFQSLYATTSLPGAPSGRHGISSKLATSIQPLNEMP-PPSNRLLRT 1000 Query: 325 TVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +D P+ F +G + N L + I+ P + + Sbjct: 1001 IIDSIPVHVFTALPHNGETTWVNARMLDYRGSTVEELIKGPWDA----LHPDDRGDYVKR 1056 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 R + I+ + + G + D R+ Sbjct: 1057 WGTAIRK-GEAFS---HQVRIRRFDGIYRWFMIRAVPLRDSRGIIVHWFGTNMDIHDQRL 1112 Query: 443 NK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + +M + S+ ++ + I N G + L+ Sbjct: 1113 AEVDAARQSEMAESESKYRSLANSSPQIVFAATSNDGITYANTQWQGYSGQTLPQALQLG 1172 Query: 497 FTVFLEQNTPS--VMNHYLTEILSL--------------------------DLRQTLEKI 528 F + + +++ + + T Sbjct: 1173 FMEHVHPADRHKCALPGPGETLVNGLPCLGNSFKMTAGGGNLGASGSGKFEEEKPTFSTE 1232 Query: 529 TLGSTKEEKLLSLRIIIKKLP-----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 K + + + T DI+ K + +L AK A+K Sbjct: 1233 LRLKDKHGNYRWHLVRCVGVETNFGTGDGQWFGTCTDINNHKLLEQRLKEAKDAAQKTME 1292 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 K+ FLA +SHEIRTPL I G + + N ++Y + I +S + +L ++ND Sbjct: 1293 SKTRFLANMSHEIRTPLIGISGMVNFLLDTPL----NGEQLDYCHTISQSSDGLLSVIND 1348 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702 +LD+SK+E+G M ++ E ++ + +A L+ A K + + +++P ++ D Sbjct: 1349 ILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAVAKDLELSFIVEDDVPPVVCGDRV 1408 Query: 703 SVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILRVR--DTGVGMTNYELEK 755 ++Q+ LN++ NAI FT G ++ +I EV+L+ DTG G + E Sbjct: 1409 RLRQVMLNVIGNAIKFTTKG-EVFSRWSVIKDAQVGEGEVMLQFECHDTGPGFDRKDEEL 1467 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE----IIFPLY 811 KPF QI S G+GLGL +++ +V+ + G+ S KG+ P Sbjct: 1468 MFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRMTAKSQKGKGSTFICSSKFRLPRN 1527 Query: 812 DTS 814 T Sbjct: 1528 PTD 1530 >gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio sp. FW1012B] Length = 735 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 112/621 (18%), Positives = 216/621 (34%), Gaps = 42/621 (6%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + F+ P VS V + L Sbjct: 120 EPFGAVLDPVRDTDQVRRFFTGTRPAVSGPFFGSVSRKLVVAVSVPVVAGGKVTASLRML 179 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 ++ + L S + + + Sbjct: 180 SATEAWTHALEDLRLPAEWAALIMDDSGTVVARSLAPQTSAGTKVSLSLQQAIRTASAGM 239 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE------IAGGLSTLLDAPKLSDNN 379 VD V G +F + + V + A + +L Sbjct: 240 VDT------VTREG--VPVKTAFAKVPGWGWVVAVGVPMSVLRAPLVRSLWMVCGGGGLL 291 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + +++ +AA L + + +P + + G Sbjct: 292 LVVGLLVALWLSRLLAAKVSLAARASAALAAGSDALLPATRVRELDAMGASLGA------ 345 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 ++ + + + ++ E + GI+++ +G L N ++ GY E++ Sbjct: 346 ---AEKTLGESMARFRAVFEQAAVGISLVTPDGRYLQVNDRYREITGYGTEELAGLRPAD 402 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555 + + L K+ ++ + + ++ + Sbjct: 403 ITHPGDRGDEEANFERLRAGHLAA-HPWEKRFVRKDGSIVWADLATSPVTDAAGNLLYFI 461 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + DIS+ K+ L AK+ AE+ S KSDF+A +SHEIRTP+ I+G + + Sbjct: 462 GVIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMI-HLARLKS 520 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 +P +Y + D S +L IVND+LD++K+E+GK+ L EP +L + AI + Sbjct: 521 ---PDPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAIEPM 577 Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 Q A EK + + + A ++P + D ++Q+ N++ NA+ FT +G + I + Sbjct: 578 QAAAGEKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGTG-HVDIRVELDDD 636 Query: 735 E--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + VRDTG+G+ L+ + F Q S + G GLGLP+++ +V+ Sbjct: 637 AAGDEAVVRRLRFTVRDTGIGIPADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVE 696 Query: 787 ANMGKFYIFSTPAKGTLIEII 807 G + S +G+ Sbjct: 697 FMGGTIDVASREGEGSTFTFT 717 Score = 68.1 bits (165), Expect = 6e-09, Method: Composition-based stats. Identities = 24/246 (9%), Positives = 60/246 (24%), Gaps = 11/246 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTT 148 G ++++ + G ++ G+R D++ + L+ + Sbjct: 373 PDGRYLQVNDRYREITGYGTEELAGLRPADITHPGDRGDEEANFERLRAGHLAAHPWEKR 432 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ V DLA P+ F G++ + A + + Sbjct: 433 FVRKDGSI--VWADLATSPVTDAAGNLLYF--IGVIQDISQRKELTAALCQAKETAERAS 488 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 K + + + K L + ++ Sbjct: 489 RAKSDFMANMSHEIRTPMNGIMGMIHLARLKSPDPALAQYLDLADLSARHLLGIVNDVLD 548 Query: 269 LPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 L + E + + +Q + E L+ P + Sbjct: 549 LAKMEAGKVRLLREPFALRREIRAAIEPMQAAAGEKGLALALAVAPDVPDAVTGDAGRLR 608 Query: 324 ETVDKC 329 + + Sbjct: 609 QVLANV 614 >gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans MPOB] Length = 870 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 104/413 (25%), Positives = 190/413 (46%), Gaps = 19/413 (4%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + ++ + D++ ++ + I E ++ I Sbjct: 209 QKGHLGETVHLPSGDEIGDVGRVFNEMSVDLERSQV--ALQQAEEKYRGIFENATEAIFQ 266 Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +G L+ N ++ ++ GY E L T Q +H E + + + + Sbjct: 267 RTPGKGHFLTVNPSMVRMLGYASEKELLTSVTDIGRQLYVRPKDHEEFERVLAEQGRIVG 326 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582 T K+ + + +++P +S Y + D++E ++++ AK AE S Sbjct: 327 FETELYRKDRSTVWVSASARRVPGTSGGGYYYEGLLVDVTERREKEKA-ERAKDTAEAAS 385 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS+FLA +SHEIRTP+ AI+GF+ ++ + +PR Y I SG ++ ++N Sbjct: 386 KAKSEFLANMSHEIRTPMNAILGFTSLLS----PLITDPRQKNYLQSIQSSGKNLMSLIN 441 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701 D+LD+SKIE+GKM + +EPV L + + +K + TS A+++P +L D Sbjct: 442 DILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKGLQFITSIASDVPECVLLDE 501 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKA 756 ++QI N++ NA+ FT SG I +S + +++ V DTG+G+ + Sbjct: 502 VRLRQILFNLVGNALRFTESG-WIRLSAWREAGAGDGSFCLVMVVEDTGMGIQPEAHNRI 560 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + GTGLGL ++K++V+ G + S P G++ EI P Sbjct: 561 FESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSRPGAGSVFEIRLP 613 Score = 45.8 bits (107), Expect = 0.034, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 6/132 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLL-KRQNTWY 144 G+ ++ + + +G + K + + D+ L++ P + +L ++ Sbjct: 267 RTPGKGHFLTVNPSMVRMLGYASEKELLTSVTDIGRQLYVRPKDHEEFERVLAEQGRIVG 326 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKK 203 +T L+ + + V + +A + + + G + V R + Sbjct: 327 FETELYRKDRST--VWVSASARRVPGTSGGGYYYEGLLVDVTERREKEKAERAKDTAEAA 384 Query: 204 FSHLHEIKKGHS 215 E S Sbjct: 385 SKAKSEFLANMS 396 >gi|220908653|ref|YP_002483964.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865264|gb|ACL45603.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 645 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 87/410 (21%), Positives = 180/410 (43%), Gaps = 29/410 (7%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473 I + E + E ++ + ++ E +L +++ +DG +++ E Sbjct: 238 IDLPFGGELGELITSFNDMAERLERYEEQNIEELTAEKAKLETLVATIADGAILLDTEMR 297 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533 I+ N A +LF + ++++ + + L + ++ R+ E + Sbjct: 298 IILINTAARRLFNWEGKEVVGENALHCFPSPVCVELTRPLFQT-AIGEREGGEFRVTLDS 356 Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 +++ + + + ++T+ DI+ + + KS F++ Sbjct: 357 SSPRIVRILLTSVLDQYREKPKGVAITVQDITR--------------EVELNDAKSQFIS 402 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTPL I F E + ++ L E+ + +R + + +VND+LD+S++ Sbjct: 403 NVSHELRTPLFNIKSFIETL-HEYGDDLSAAERREFLDTANRETDRLTRLVNDVLDLSRL 461 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESGK HFE + L +A+ + + QL A +K I + +P + + + Q+ N Sbjct: 462 ESGK-RYHFEAMDLVQAIEQTLRTHQLNARDKGIELIQEAEPALPNVWGNYDLLLQVFGN 520 Query: 711 ILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 ++ NA+ FTP GG++ I + ++V + V DTG+G+ + F ++ Sbjct: 521 LVGNALKFTPKGGRVAIRAYVLAQTPPLTGKQVRVEVSDTGIGIAPEDQSAIFDRFFRVE 580 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 N + EGTGLGL + + ++ + ++ S GT P+Y + Sbjct: 581 N-RVHTLEGTGLGLSIVQNIMQKHHTTIHLVSEVGVGTTFWFDLPVYQSE 629 >gi|189348642|ref|YP_001941838.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] gi|189338780|dbj|BAG47848.1| signal transduction histidine kinase [Burkholderia multivorans ATCC 17616] Length = 767 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 105/618 (16%), Positives = 212/618 (34%), Gaps = 30/618 (4%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++V + F + P + + + L+ + Sbjct: 13 ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 72 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S P + + + + + + G Sbjct: 73 FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAGRAQFEAL 132 Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 ++ P G L Y N + L + D AG + D ++ Sbjct: 133 LNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 189 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + H ++ + + A+ + + R Sbjct: 190 AVEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 248 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ ++++A+ D + I+R+ I+S N A ++FGY E + F + Sbjct: 249 DAAQVR----RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 303 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + H L + L ++ + + + + + + I+ Sbjct: 304 -RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 361 Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + A + A + K + LA VSHE+RTPL I G+ EV++N Sbjct: 362 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 421 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L ++ + IDRS + +V D+LD S + +GK+ L PV + ++ + Sbjct: 422 SGDDAL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 477 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + Q A+ I + + D ++Q+ N++SNA+ FTP+GG + +S H Sbjct: 478 AAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 536 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +L V DTG G+ + F + +S G GLGL + + +V + G Sbjct: 537 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 596 Query: 793 YIFST-PAKGTLIEIIFP 809 + S +GT + P Sbjct: 597 VVDSAGRNRGTTFTVKLP 614 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 65/260 (25%), Gaps = 21/260 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 D +G L ++ +G G L DV + D ++ T Sbjct: 144 DTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSAVEHALGGTRTTCE 203 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W VP+ A PI + G A +R S Sbjct: 204 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 263 Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250 + S IF + R + + ++ H Sbjct: 264 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 323 Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D + + ++ P + + T ++ + + + S R+ Sbjct: 324 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 383 Query: 309 PSLSAYFDEGENLTPETVDK 328 +A + ++ TV Sbjct: 384 GEQAATSNRLKDELLATVSH 403 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + + + G G R + + + + + + G Sbjct: 268 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 326 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + +AA P+ R+ G + R R +R + Sbjct: 327 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 381 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ + K ++ + S + + DD L+ + + S Sbjct: 382 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARS 441 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + T K T+ + F + + S+ Sbjct: 442 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 487 >gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 622 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 99/550 (18%), Positives = 195/550 (35%), Gaps = 53/550 (9%) Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET-------VDKCPIPFFVYSHGNLFYA 344 S + +A G L V + P+ V + A Sbjct: 85 PDGRVIASSGETGGSADSNAAAQIWPGVELNRALDGETATDVQQNPVGRLVVRAASPVRA 144 Query: 345 NPSFL--LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 L + + + G L +S + + + D R Sbjct: 145 GDRILGVVWLETPLAQVVAPFGAWWAWLVGLGVSVSLGVAWSAVVARDIRTGLLQLRQAA 204 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEA 460 W + + F ++ Q E + + + + K+ +E +L ++ Sbjct: 205 AVWAQGRYHGLPFRRKDELGQVAEELAEMASALQRSTEDLAMSVEKLHLEKDRLEITMQH 264 Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 G+ ++ G + N A+++L G + ++ + F M Sbjct: 265 LVSGVMALDGRGRVEWINPAMAELIG--EQRVIGRRFWGIQAFQPIYAMIDQAVRNGEGG 322 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------------------CYSLTMH 559 + E ++ + I + + + +H Sbjct: 323 RYDGVFGPAR-REVEVHVVPIPRIPGQGQEAGSTKDVGRPEGRHFLRGSSLSGGAVVIIH 381 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D++E ++ + + +F+ VSHE++TP+TAI G +E + + P Sbjct: 382 DVTERRRLEQV--------------RKEFVTNVSHELKTPVTAICGLAETVVEEDLAP-- 425 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 + I R + +V DLLD+S++ES LH PV L E + + A Sbjct: 426 -EERRHFLELIHREARRLEQLVRDLLDLSRLESHLTTLHRRPVDLAEMARDVVQDYGYAA 484 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + + + R D V+Q+ N++ NA+ +TP+GG++ + T EV + Sbjct: 485 EQAGTDLYLDKEGDC-RAEVDPDRVRQVLSNLIDNALKYTPAGGRVDVRVLGTDPREVKV 543 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V DTGVG+ + ++ + F ++ ++ GTGLGL + K +V + G+ + S Sbjct: 544 EVADTGVGIPPEDRDRVFERFYRVDKARARTTGGTGLGLAIVKHVVQLHGGRVGVESEVG 603 Query: 800 KGTLIEIIFP 809 KG+ + FP Sbjct: 604 KGSRFFVQFP 613 >gi|77920444|ref|YP_358259.1| putative two component signal transduction protein [Pelobacter carbinolicus DSM 2380] gi|77546527|gb|ABA90089.1| putative two component signal transduction protein [Pelobacter carbinolicus DSM 2380] Length = 917 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 98/765 (12%), Positives = 235/765 (30%), Gaps = 62/765 (8%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGK 146 D HG+ + +S +G +++G L D+ ++ D L + Sbjct: 172 EADQHGFFRYLSPSHGMVLGFAPEELVGTWLYDLMHPDDLERMRITFRDTLPALKIVRAE 231 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G Y+ ++ A +G + +++ Sbjct: 232 FRYRHADGH--YLWLETIAKCTTDELNRVNGA--VFASRDVTERVRAEKALRNNEEQLRR 287 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDD-VLKTEKYPLL 262 + + S + + + + + H DD + + + Sbjct: 288 ITDHMPALVSAADLDGLFTYLSPSHRGILGFDYEALIGTCLWDWMHPDDMERMRKAFQVT 347 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLSAYFDEGE 319 E+ + E+ + ++ + + + F E Sbjct: 348 LPEKKRVHEEFRYRHVDGHYIWLETVAKCTMEGLRVTGSIFASRDITERRRAEIALREVN 407 Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 T+ P+ FV G + NP+ + + + L+ + N Sbjct: 408 QTLQATIQASPLAIFVLNREGCIQLWNPAARQMFGWTEEEVKGKYYRLAPDYLDLEFRQN 467 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + L ++F +Q + GI + Sbjct: 468 --------LARMNRGEKFHGQETKRRCKDGTLLDISFSTAPLYDQKGRIIGTVGILEDIT 519 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497 + + + + I E D + + + IL N +L+GY + + Sbjct: 520 ERKRTEVALRESEELFRQIFEQNEDPAFLFDPDTLAILDANAVAVRLYGYSKKALRAGGL 579 Query: 498 TVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSS 552 + ++ + L L+ D K + S R + + Sbjct: 580 NLIMKPVVLTSFARKLVKEQAGLADDAPWRHVSPLNTIASSGKEVMASFRGRLLRSRGQV 639 Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610 + T DI+E + + + S + + + + ++HEI P ++ ++ + Sbjct: 640 YFYGTFRDITEKLRIRKERSEMQAKLIQANKMTAIGTLASGIAHEINNPNNYLLANAQFL 699 Query: 611 ----------KNQRFGPLGN------------PRYIEYANYIDRSGNLVLDIVNDLLDIS 648 + + + + + +IV L D S Sbjct: 700 EEAWPDIQHTLQEHADSDPDLTIGGLPVQEALKDIPQLLQSLIEGSRRIKNIVTSLKDFS 759 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 + + PV ++ ++ A+ ++ + L + + +P I+ + ++Q+ Sbjct: 760 RQDD---ESTRRPVDINRVINAALVILANKIKKSTDLFNCTLSAGLPPIMGHSQKIEQVI 816 Query: 709 LNILSNAIHFTP---SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 +N+L NA+ P +G + S + V++++RD G G+ + + PF Sbjct: 817 INLLINALQALPHRQAGVSLTTSLQESPR-SVVIKIRDQGTGIPEEIRGRILDPFFTTK- 874 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + GTGLGL + A+++ + G S GT + ++ P+ Sbjct: 875 ---HKTGGTGLGLSICYAIINDHKGSIDFASEAGAGTTVTVVLPV 916 Score = 164 bits (415), Expect = 6e-38, Method: Composition-based stats. Identities = 61/544 (11%), Positives = 145/544 (26%), Gaps = 39/544 (7%) Query: 66 NYLDSENTFVFDPIP-------RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118 + + DP + + G + + + +G +++ Sbjct: 18 GNVSAGEALPTDPGLFDNMIRLLPDPIFFK-NLDGSYQRCNAAFEQLLGKERAEIVDKTD 76 Query: 119 CDVSDI--LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 D+ H++ +N I L + +T++ G V I +A + I + Sbjct: 77 YDLFLPSIAHVNRHNDICLLNAGLPSHRYETSIVSRNGRRREVIIQIALITI---EGGPT 133 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHL 234 G FGI+ + + + S + + S Sbjct: 134 GI--FGIIKDITERRRAETALRERKDLLHRITDNMLDLVSEADQHGFFRYLSPSHGMVLG 191 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTL 292 ++ Y D L+ + + + + + + + + + Sbjct: 192 FAPEELVGTWLYDLMHPDDLERMRITFRDTLPALKIVRAEFRYRHADGHYLWLETIAKCT 251 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPF-FVYSHGNLFYANPS 347 + + + ++ D P G Y +PS Sbjct: 252 TDELNRVNGAVFASRDVTERVRAEKALRNNEEQLRRITDHMPALVSAADLDGLFTYLSPS 311 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + I + V L R + Sbjct: 312 HRGILGFDYEALIGTCLWDWM--HPDDMERMRKAFQVTLPEKKRVH-----EEFRYRHVD 364 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + + + R + + L + ++A+ I + Sbjct: 365 GHYIWLETVAKCTMEGL-RVTGSIFASRDITERRRAEIALREVNQTLQATIQASPLAIFV 423 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 +NREG I N A ++FG+ E++ K + L + + + Sbjct: 424 LNREGCIQLWNPAARQMFGWTEEEVKGK-YYRLAPDYLDLEFRQNLARMNRGEK--FHGQ 480 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583 T K+ LL + L + DI+E K+ + L ++++ + Sbjct: 481 ETKRRCKDGTLLDISFSTAPLYDQKGRIIGTVGILEDITERKRTEVALRESEELFRQIFE 540 Query: 584 HKSD 587 D Sbjct: 541 QNED 544 Score = 107 bits (267), Expect = 8e-21, Method: Composition-based stats. Identities = 40/337 (11%), Positives = 90/337 (26%), Gaps = 32/337 (9%) Query: 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 L + P P F G+ N +F L + + ++ L Sbjct: 22 AGEALPTDPGLFDNMIRLLPDPIFFKNLDGSYQRCNAAFEQLLGKERAEIVDKTDY--DL 79 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 N +L + + N + I P Sbjct: 80 FLPSIAHVNRHNDICLLNAGLPSH---RYETSIVSRNGRRREVIIQIALITIEGGP--TG 134 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 GI + + R + + L I + D ++ ++ G + + + G+ Sbjct: 135 IFGIIKDITERRRAETALRERKDLLHRITDNMLDLVSEADQHGFFRYLSPSHGMVLGFAP 194 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----III 545 E+++ + + M + L + + + L L Sbjct: 195 EELVGTWLYDLMHPDDLERMRITFRDTL--PALKIVRAEFRYRHADGHYLWLETIAKCTT 252 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV-----------SH 594 +L + D++E + + L + ++ + + H ++ SH Sbjct: 253 DELNRVNGAVFASRDVTERVRAEKALRNNEEQLRRITDHMPALVSAADLDGLFTYLSPSH 312 Query: 595 EIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYI 630 I+GF E + +P +E Sbjct: 313 ------RGILGFDYEALIGTCLWDWMHPDDMERMRKA 343 Score = 67.7 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 25/284 (8%), Positives = 71/284 (25%), Gaps = 23/284 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + ++ G ++ + + G ++ G D L ++ ++ + + + Sbjct: 421 IFVLNREGCIQLWNPAARQMFGWTEEEVKGKYYRLAPDYLDLEFRQNLARMNRGEKFHGQ 480 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +T +GT + I + P+Y + G GI+ + ++ F Sbjct: 481 ETKRRCKDGTL--LDISFSTAPLYDQKGRIIGT--VGILEDITERKRTEVALRESEELFR 536 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---------RMKNKVSSLTEYYAHKDDVLKT 256 + E + + + + R + Sbjct: 537 QIFEQNEDPAFLFDPDTLAILDANAVAVRLYGYSKKALRAGGLNLIMKPVVLTSFARKLV 596 Query: 257 EKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 ++ L + P + + + + + + Sbjct: 597 KEQAGLADDAPWRHVSPLNTIASSGKEVMASFRGRLLRSRGQVYFYGTFRDITEKLRIRK 656 Query: 314 YFDEGENLTPE-----TVDKCPIPFF--VYSHGNLFYANPSFLL 350 E + + + + + N AN FL Sbjct: 657 ERSEMQAKLIQANKMTAIGTLASGIAHEINNPNNYLLANAQFLE 700 >gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain [Methylobacterium extorquens AM1] Length = 646 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 V A D E S+ + + ++ + Sbjct: 3 VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 57 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 + + A L V +V + + L Sbjct: 58 LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 117 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 A L + +S + + A + L +L Sbjct: 118 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAIALSGYLPVGALALDWPNAIVM 175 Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 E + + +M+ + +L A D + + G +L + Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536 + ++ G + + + ++++ + T+ Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 295 Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + ++ S D+SE ++ +L A+ AE+ K+ FL Sbjct: 296 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A VSHE+RTPL AIIGFS+V+ + L R EYA I +SG +LD+VN LLDIS+ Sbjct: 356 ATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 I G + EPV ++ + L++L A+ I + ++ ++AD R+ +Q+ + Sbjct: 416 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARACRQMLI 475 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N++SNA+ FTP GG++ + + + V D G+G+T +L + PF Q+ Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 534 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 EGTGLGL + + + + G + S P KGT + + PL Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575 Score = 40.4 bits (93), Expect = 1.4, Method: Composition-based stats. Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA+G + E S + +G A ++ G L D I + Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 285 Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204 ++ + A +G G + R + Sbjct: 286 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263 E+K + + + + + SL+ + + + + L Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLL 404 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315 ++L + + + + L + + S L+ P+ A Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALV 464 Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347 + ++ F G + Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497 >gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus megaterium QM B1551] Length = 995 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 111/440 (25%), Positives = 188/440 (42%), Gaps = 31/440 (7%) Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP------EDVDTR 441 + I I + P ++ E + +D+ + Sbjct: 74 AWEGQYIEYEGEFRGI------YYVIYLRPLFHKDKVAEVVGTCVDITNKKIMEDDILQK 127 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTV 499 +RK+ S+++ GIA+ + I NR +LF E + + Sbjct: 128 EQERKLMNSYAFQRSLIDRLHSGIAVTDCNKKIRLLNRKFYELFQLKGEVDCHIGMQASD 187 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 + + KI G T L + Y Sbjct: 188 LHYLFDKEINKNKFENTEKRTRTTKEIKIDTGRTLRYNCFPLN----EENDFVGYLWEFE 243 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 DI+E K+ + + AK+ AEK + KS FL+++SHE+RTPL I+GF+++++ Sbjct: 244 DITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDESL 300 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N + ++A I G+ +L ++ND+LD+S+IE+G + + E V L + E I++VQ A Sbjct: 301 NEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLA 360 Query: 680 NEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 +K I I + +LAD +KQI LN+L NAI + G++I+ N++ Sbjct: 361 KKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQ-Y 419 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTGVG + E K PF +I ++ + EGTG+GL L K +V G+ + S Sbjct: 420 IHIVDTGVGFSVEEYTKVFVPFYRIEST---KEEGTGIGLSLVKQLVHLMGGEINVTSNK 476 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 G+ PL P+D Sbjct: 477 GTGSEFCFSLPL-----PND 491 >gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272] gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273] Length = 591 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 159/365 (43%), Gaps = 27/365 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E QL SIL + +DG+ +N+EG ++ N E+ + L + Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGAVVVINPPAEHFLQVWQEEK-----EIELSKKL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 PS + ++ + +Q +E + + L + + D++E + Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I + +VN+LLD++++ESG + LH V + V + Q A +K + Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I + D ++Q+ N++ NAI T +GG + + ++ + V+D+G Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSG-LTFEVQDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+ ++ F + ++ + GTGLGL +AK +V + GK + S +GT Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTF 582 Query: 805 EIIFP 809 + P Sbjct: 583 SVYLP 587 >gi|86609856|ref|YP_478618.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558398|gb|ABD03355.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 700 Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 177/382 (46%), Gaps = 26/382 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ +L +++ + D +++ E +L N A S++FG+ + +L KP L ++ Sbjct: 309 EELAAAKAKLETLVFSIVDAAILLDAELRVLLLNPAASRMFGWEGDPVLGKPLPELLPED 368 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 + L +I ++ E + ++++ + + P +T+ DI Sbjct: 369 LQQQLARPLMQIAR-GDQEAEEVRVNLTGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDI 427 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + K+ F++ +SHE+RTPL +I F E + + + + Sbjct: 428 TR--------------EVELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSSA 472 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y +R + + +VND+LD+S++ESGK HFE V + + + + QL A + Sbjct: 473 ERLDYLEIANRETDRLTRLVNDVLDLSRLESGK-QYHFEGVDIAAVIEQTLRTHQLQARD 531 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736 K I +R ++P + + + Q+ N+L NA+ FTPSGG + + + Sbjct: 532 KGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAHLVVQADGSPQA 591 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTG+G+ + E+ F ++ N + EGTGLGL + + +++ + + + S Sbjct: 592 VRVAVADTGIGIAPEDQERIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHRTRICLES 650 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 +G+ LY P + Sbjct: 651 KLEQGSTFWFDLHLYTEEGPLE 672 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 64/253 (25%), Gaps = 15/253 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA + ++ + G ++G L ++ + R + + Sbjct: 332 LDAELRVLLLNPAASRMFGWEGDPVLGKPLPELLPEDLQQQLARPLMQIARGDQEAEEVR 391 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + T + I L+ P+ R+ GIV + L + + S++ Sbjct: 392 VNLTGPTKRVIRILLS--PVSDPRRQ----NLKGIVMTVQDITREVELNEAKAQFISNIS 445 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------KYPLL 262 + K + + + E + D L L Sbjct: 446 HELRTPLFSIKSFIETLYE---YGEQMSSAERLDYLEIANRETDRLTRLVNDVLDLSRLE 502 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + ++ + I T + ++ + + NL Sbjct: 503 SGKQYHFEGVDIAAVIEQTLRTHQLQARDKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLL 562 Query: 323 PETVDKCPIPFFV 335 + P V Sbjct: 563 GNALKFTPSGGLV 575 >gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato K40] gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 775 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 130/607 (21%), Positives = 236/607 (38%), Gaps = 28/607 (4%) Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279 + + Q+ R+ + + + + + LLT +E LP + + Sbjct: 39 AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 98 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337 +S E L L G Sbjct: 99 ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 158 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L ++ L STLL A + +ML + Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 AR+H +Q N + + + + + +R + +L Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272 Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ + F+VF Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 + + + + K+ ++I S +S DIS+ + + Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTS 689 R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A + I + Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 505 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V DTG G+ Sbjct: 506 YLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGIA 564 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + KPF ++ EGTGLGL L+K+M++ G + +T +G + P Sbjct: 565 PERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALP 622 Query: 810 LYDTSHP 816 P Sbjct: 623 FVAVHAP 629 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 68/265 (25%), Gaps = 20/265 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + K+ + + E P Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSS----VLKETLVLVSPMAADGNIELKELPYLPDELGV 513 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339 + + L ++ Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPD 538 >gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16] Length = 598 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 166/403 (41%), Gaps = 24/403 (5%) Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 E + Q + N ++ E QL IL + +DG+ Sbjct: 211 EVAQGQFHTKVPILTQDEIGQLAIAFNRMRRELNRNISELNQEKEQLSHILASMADGVIT 270 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++R+G IL TN ++ + +KP T + P + +++S + + E Sbjct: 271 LDRQGRILLTNPQAEEVLALLFYEEGQKPITGE-RKTLPVSLTPLFEQVVSAEKEELQEL 329 Query: 528 ITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + + +++ + + D++E ++ + Sbjct: 330 SV-----QGRSMAVLMAPLYAEEHVRGAVAVVRDVTEERRH--------------DKLRK 370 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 DF+A VSHE+RTP++ + G+SE + + + E A I + +VN+LLD Sbjct: 371 DFIANVSHELRTPISMLQGYSEAMVDGV--TSSDEERKEVAQIIYDESLRMGRLVNELLD 428 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 ++++E+G ++L+ E V LD + +A E + + + + D ++Q Sbjct: 429 LARMEAGYIDLNLEEVDLDSYLERITRKFASFAREYDVTVELAKPGRGQIAVFDPDRIEQ 488 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N++ NAI T GG I + + V DTG G+ +L + F + + Sbjct: 489 VLTNLIHNAIRHTNPGGLITVVHEQEEERD-TFAVVDTGRGIPEEDLPYVFERFYKADKA 547 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + GTGLGL +AK ++DA+ GK + S +GT P Sbjct: 548 RTRQHGGTGLGLAIAKHIIDAHQGKITVHSRLGEGTTFHFTLP 590 >gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124] gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str. JGS1987] gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC 3626] gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str. JGS1721] Length = 571 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%) Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++EI + + L +IL++ G+ +R+ +L N K+FG E I K Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 ++ + E + + K+L +R I P Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ K+ + + +S F+A +SHE++TPLT+I GF+E ++ Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++ + ID + + ++ D+L + +IE + + E ++DE + + L+ Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + I +N ++ D KQ+ LN++SN++ +T GG++ + ++ + Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++L + D G+G++ +L + + F ++ ++ GTGLGL + K +V G+ + Sbjct: 495 NLVLVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554 Query: 796 STPAKGTLIEIIFPL 810 S GT I I P+ Sbjct: 555 SELGVGTKIVITIPI 569 >gi|124268874|ref|YP_001022878.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] gi|124261649|gb|ABM96643.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum PM1] Length = 833 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 107/587 (18%), Positives = 226/587 (38%), Gaps = 29/587 (4%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 +++ + L L T L + + + Y L + Sbjct: 102 IANDAPNDPRRGGGLPQGHQALNTFLGVPLHYGSELVGMIGLANRRPGYDHALLDALDPL 161 Query: 300 FEYLSH--------RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350 F+ ++ R + + E + + + G L N F Sbjct: 162 FQSMAGIIASVQLDRQRRAAESALRASEERWRHSFEMAGAGIAQTGADGRLLEVNARFCE 221 Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + + + + D+ A +L R + R + Sbjct: 222 IVGRSRDELLAGS------FRELTHPDDLADDEDLLRRLVAGQVLRENREKRYLRPDGTT 275 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--- 467 L + + + + R + ++ + + G+ + Sbjct: 276 LWVQLTVTAVFDALGRFQHTVTVALDIDQRRRAEAALQEREALFTKLADRVP-GVLLQFN 334 Query: 468 INREG--IILSTNRAVSKLFGYPVE---DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522 ++ +G + +R + +LF + + + + + L Sbjct: 335 VDAQGVARVPYASRGLRELFELDPDGAVRDDARLMIERVAKGQRKRVWETLERAGQRLEP 394 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 +E ++ + + + ++LP S + + DI++ KQ + + A + Sbjct: 395 WAIEFEVDLPSRGRRAVEAQGSPERLPDGSTTWHGYIRDITDRKQA-DAALMNAQAAARA 453 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + K++FL+R+SHE+RTPL A++GF++++ PL + +I+R+G +L ++ Sbjct: 454 NEAKTEFLSRMSHELRTPLNAVLGFTQLLLGDPSAPLQDG-QRARLGHIERAGQHLLAMI 512 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701 D+LD+S+IE+G + L +PV L VSE+ +LV A+ + + ++ + AD Sbjct: 513 GDVLDLSRIETGSLPLQPQPVGLSALVSESFALVLPTAHASGVTLIRRGPGDL-HVTADP 571 Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761 ++Q+ +N+LSNA+ + SGGQ+++ T V + V DTG+GMT + +PF Sbjct: 572 MRLRQVLVNLLSNAVKYNRSGGQVVVETEGIDEHTVRIAVTDTGMGMTPAQQLHLFEPFN 631 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ + EGTGLGL + +V+ G+ + S P G+ + Sbjct: 632 RLGAERS-SIEGTGLGLAITLRLVELMDGRISVHSQPGSGSTFHVEL 677 Score = 77.4 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 8/221 (3%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--G 145 A G L E++ + +G +++ +++ + + + L Sbjct: 205 QTGADGRLLEVNARFCEIVGRSRDELLAGSFRELTHPDDLADDEDLLRRLVAGQVLRENR 264 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +GT + + L ++ F + A + + F+ Sbjct: 265 EKRYLRPDGTT--LWVQLTVTAVFDALGRFQHT--VTVALDIDQRRRAEAALQEREALFT 320 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + G + + D P R ++ L A +DD + Sbjct: 321 KLADRVPGV--LLQFNVDAQGVARVPYASRGLRELFELDPDGAVRDDARLMIERVAKGQR 378 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + E + + + + R Sbjct: 379 KRVWETLERAGQRLEPWAIEFEVDLPSRGRRAVEAQGSPER 419 >gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains) [Idiomarina baltica OS145] Length = 868 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 88/410 (21%), Positives = 159/410 (38%), Gaps = 14/410 (3%) Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472 + + + L + + N + Sbjct: 34 VLLTSVVVGLIAGTVIYTWTRQTSLTSPLRQPFLTASSQQLLQQVFNDLPTRVYWRNSDL 93 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 L N A + E + K ++ L L +I L Sbjct: 94 EFLGGNDAFLRDIQCSTEALEGKRDDQLAWLAKNPILQERDRLTLEHGLASCNAEIELNL 153 Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + + + + +DIS K ++ AK+ AE+ + K +FLA Sbjct: 154 ANNTRYIEHSSVPLYDDQKNVIGIIGSYYDISSIKSVAEQMEQAKESAEQANVAKGEFLA 213 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTP+ AI+G + + + + + Y ID S +L ++ND+LD SKI Sbjct: 214 NMSHEIRTPINAIVGMANLCLKTQL----SEKQKRYIKVIDSSSQALLGVINDILDFSKI 269 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709 ++GK+++ P L + ++ + A +K + + NIP R+ D + Q+ + Sbjct: 270 DAGKLSIERIPFDLQDVLTSLADMFAYKAYDKDLEFIINLPANIPTRLFGDPLRLNQVLV 329 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N++SNAI FT G +I ++ T + + V DTG+GM + K F Q + Sbjct: 330 NLVSNAIKFTEDG-EINVAVTLLDKNTDKVWLRISVTDTGIGMDEEQRANLFKAFTQADS 388 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDT 813 S + GTGLGL +++ ++ G + S +G+ I P+ Sbjct: 389 STTRKYGGTGLGLAISRRLIQLMGGDIGVTSGVGQGSTFYIELTLPMQPE 438 >gi|83312522|ref|YP_422786.1| Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Magnetospirillum magneticum AMB-1] gi|82947363|dbj|BAE52227.1| Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Magnetospirillum magneticum AMB-1] Length = 840 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 101/659 (15%), Positives = 222/659 (33%), Gaps = 32/659 (4%) Query: 163 LAALPIYSRNREFSGFRGFGI--------VHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214 +AA PI + + +G + + + RA R D Sbjct: 196 IAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLREDGIILARLPNSDAW 255 Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274 V K + + + P R +S T+ + + EK+PL+ + SL E Sbjct: 256 RGVSVAKGAVMAHLATAP--RGTLLGTSATDGHERVIAYRRLEKHPLVVAVGMSLTEVLM 313 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 + + L + E + P+ F Sbjct: 314 TWSRDTALQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVF 373 Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 G YAN +L L + + D+ + Sbjct: 374 QADAEGTCLYANERWLELAGRGRSELLGEK------WCQVVHPDDREAVAALWRGHVNGQ 427 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 A + ++ + + + + G + + +R++ + + Sbjct: 428 GEFLAEMRLMRGDGA-IRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRLRLSEEK 486 Query: 454 LCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 A+ D + I + +G + N A + + GY D++ P Sbjct: 487 FAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADPEDRARL 546 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNK 570 + Q + T K ++ I + L C D+SE K + + Sbjct: 547 VEAARRDG--QVVNFETRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKAMEAR 604 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + + F SH+++ PL I G++++I+ + G L + E+ ++ Sbjct: 605 SRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDDD-ADEFIAFL 663 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + ++ DLL+ S++E ++ FE + E + + ++ + E I Sbjct: 664 VDGAKRMQAMIRDLLEYSRVE--RLGGQFESFGMGEVLDDVMANLGAALTETGGRIEV-- 719 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMT 749 +P++ AD + ++ N++ NA+ + Q +++ T ++ V D G+G+ Sbjct: 720 -GPMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIE 778 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 ++ F ++ + +GTG+GL + K +V+ + G+ ++ S P +G++ Sbjct: 779 PAYFDRIFLVFQRLH--TREHYDGTGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSL 835 Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats. Identities = 26/265 (9%), Positives = 63/265 (23%), Gaps = 13/265 (4%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127 SE + V + DA G +E + G +++G + C V Sbjct: 355 AASEARYRMLTEHSPVG-VFQADAEGTCLYANERWLELAGRGRSELLGEKWCQVVHPDDR 413 Query: 128 DPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + + + Q + + L G + A + G G + Sbjct: 414 EAVAALWRGHVNGQGEFLAEMRLMR--GDGAIRWVRGHAAALSVEEGPAGGL--VGTIED 469 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + + ++KF+ + E + +++ + Sbjct: 470 ITAAKEAERRLRLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGH 529 Query: 246 YY------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 A +D + + + + + + L + Sbjct: 530 TALGMGVWADPEDRARLVEAARRDGQVVNFETRLRRKNGEVFDTLIAVQKVVLDDLDCLL 589 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPE 324 F ++ A E Sbjct: 590 FICRDVSERKAMEARSRELLVRLDA 614 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 21/265 (7%), Positives = 62/265 (23%), Gaps = 13/265 (4%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129 SE F ++ G ++++ +G ++G + + DP Sbjct: 483 SEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTA--LGMGVWADP 540 Query: 130 NNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + + + +T L G I + + + + I Sbjct: 541 EDRARLVEAARRDGQVVNFETRLRRKNGEVFDTLIAVQKVVLDDLD------CLLFICRD 594 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 A + L + ++ + + V + ++ + + Sbjct: 595 VSERKAMEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDD 654 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLS 304 A + + + + L E + + + + N + Sbjct: 655 DADEFIAFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETG 714 Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329 R + + Sbjct: 715 GRIEVGPMPQVTADRSQMLRLLQNL 739 >gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942] Length = 611 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 27/376 (7%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + E E +L S++ +DG+ NR G I+ N +L E L P Sbjct: 248 TRELEDAQAMTEGERRKLSSVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554 T L + + + S LE ++ +L + + + Sbjct: 308 ITSLLGIHENFTFEDLVEQQES----MLLEIE---REEQTTVLRVNFSVIEREHGKIDGL 360 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614 ++D++E ++ + + +F+A VSHE+RTPLT + + E + Sbjct: 361 IAVIYDVTEQEKIDQE--------------RREFVANVSHELRTPLTTMRSYLEALAEGA 406 Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674 + + ++ +VNDLL +SK +S + E + +S I Sbjct: 407 W--ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIHFIRFISLIIDR 464 Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 + E+ + + + D + Q+ NI+SNA+ ++P GG + S Sbjct: 465 FE-MTKEQHVEFIRQLPDRSLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSVNVNEE 523 Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 EE++ + V+D G+G+ ++EK + F ++ ++ + GTGLGL +AK MV A+ G + Sbjct: 524 EELLYISVKDEGIGIPKKDMEKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIW 583 Query: 794 IFSTPAKGTLIEIIFP 809 S KGT + P Sbjct: 584 ADSIEGKGTTVTFTLP 599 >gi|262198967|ref|YP_003270176.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262082314|gb|ACY18283.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 990 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 106/743 (14%), Positives = 231/743 (31%), Gaps = 49/743 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146 + ++GYL E+ + ++ L ++ + + + G + Sbjct: 130 LGSNGYLHEVGTVWSERFAYPRAMLLERPLLELVHEDDREAMARSLAQIANSDAACGAVE 189 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T L +G + L+ +Y + L S Sbjct: 190 TRLRRAQGGYRW----LSWYMVYDAENQCVHLS----AQDVSEVKRQERLLAETQGAASI 241 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 H + +I+ P + + + L Y + E Sbjct: 242 GGWELDLHDTTLYWTDEIYRIHDLSPDSYLPSPETVLAFYEPGSAERFGR-AVKRAARGE 300 Query: 267 SSLPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTP 323 + + T + + G F ++ E E Sbjct: 301 GGFDMEVELRTPAGRSVWCRNIGHMGFENGEVVRVFGSCQDVTEQRAIREAQRESEQQLR 360 Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V I V G + + N + L + I + + A+ Sbjct: 361 SLVRDVGIGVMVQGPEGEILHCNRAALDALGLSEHEVIGMPAPRLLAYAIHEDGTPLALG 420 Query: 383 PVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 L R+ T + L R+ + + + + + + Sbjct: 421 SDPLSRALETGQSVKDVILGVPHTGRDEPVWLLVNVVSRIDAAGSLRWAVCSFADISARK 480 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + ++ E G+ + + +G ILS+N S++ GY + + P L Sbjct: 481 RAEDTARESAAMFRAVYENAGLGVLMRDIDGAILSSNPTFSRMLGYSAKTLRSMPLDAML 540 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557 + +L+ R+T E ++ +++ + + + + Sbjct: 541 HPGDRELGGDEHEALLA-GERETYEVDRRYVRRDGEIVWGHVTVSVVRGASDEPQYVVEM 599 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF-------SEVI 610 + DI++ K+ + +L ++A + A V+HEI PLT ++G E + Sbjct: 600 IVDITDRKRMEAQLMLTDRLASLGTMA-----AGVAHEINNPLTWLMGNVSYVRESLEEL 654 Query: 611 KNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 +++ + + IV DL ++ + + L E + Sbjct: 655 RDEIALDDDSADDLDKALADSLVGAERIRTIVQDLKLFARDREDEDGIA----DLGEVLH 710 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP----SGGQI 725 + +++ + R ++ ++P ++ D + Q+ N+L NAIH P +I Sbjct: 711 STLRMLRNELH-HRAVLEQKV-GDVPPVVGDPARLGQVFTNLLVNAIHALPDRDREENRI 768 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I + V++ + D GVGM+ + PF G+GTGLGL + +++ Sbjct: 769 EIRGVRSGRG-VVIEISDNGVGMSPETQARIFDPFYTTK----EVGQGTGLGLSICHSII 823 Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808 G+ + S +GT + Sbjct: 824 AQIGGRIEVDSELGQGTTFRVHL 846 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 122/492 (24%), Gaps = 40/492 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 DA + + A G L V P G+ Sbjct: 22 TDADDRIAWANAAALALFDWDADGACGQSLSAVLRFQGPRPVLAPGESAAVCVLHGSAEA 81 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + GT V E SG R G V V A K + S L Sbjct: 82 SRVVHGTMRSVA-------------ENSGER-VGHVFVFTGQQTYEARAKHWLSQ-SSLL 126 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 G + E ++S++ P + + L + + + + S+ + Sbjct: 127 YALLGSNGYLHEVGTVWSERFAYPRAMLLERPL-LELVHEDDREAMARSLAQIANSDAAC 185 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + Y N L ET Sbjct: 186 GAVETRLRRAQGGYRWLSWYMVYDAENQCVHLSAQDVSEVKRQE-------RLLAETQGA 238 Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 I + Y + + + P ++ Sbjct: 239 ASIGGWELDLHDTTLYWTDEIYRIHDLSPDSYLPSPETVLAFY-EPGSAERFGRAVKRAA 297 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 R + L + S+ I + E + G + + R + Sbjct: 298 RGEGG-FDMEVEL---RTPAGRSVWCRNIGHMGF-ENGEVVRVFGSCQDVTEQRAIREAQ 352 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQ 503 QL S++ G+ + EG IL NRA G +++ P + + Sbjct: 353 RESEQQLRSLVRDVGIGVMVQGPEGEILHCNRAALDALGLSEHEVIGMPAPRLLAYAIHE 412 Query: 504 NTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + + L+ L + + T ++ + L + + ++ + Sbjct: 413 DGTPLALGSDPLSRALETGQSVKDVILGVPHTGRDEPVWLLVNVVSRIDAAGSLRWAVCS 472 Query: 558 MHDISEWKQEKN 569 DIS K+ ++ Sbjct: 473 FADISARKRAED 484 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 31/245 (12%), Positives = 72/245 (29%), Gaps = 26/245 (10%) Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 + + +AN + L L + + + P+ Sbjct: 21 MTDADDRIAWANAAALALFDWDADGACGQSLSAVLRFQGPRPVLAPGESAA--------- 71 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + ++ A + + + + G + + + + Sbjct: 72 ---------VCVLHGSAEASRVVHGTMRSVAENSGERVGHVFVFTGQQTYEARAKH---- 118 Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L +S A++ G + S+ F YP +L +P + ++ M L Sbjct: 119 ---WLSQSSLLYALLGSNGYLHEVGTVWSERFAYPRAMLLERPLLELVHEDDREAMARSL 175 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573 +I + D T + L + + C L+ D+SE K+++ L+ Sbjct: 176 AQIANSDAACG-AVETRLRRAQGGYRWLSWYMVYDAENQCVHLSAQDVSEVKRQERLLAE 234 Query: 574 AKKIA 578 + A Sbjct: 235 TQGAA 239 >gi|158421976|ref|YP_001523268.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS 571] gi|158328865|dbj|BAF86350.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS 571] Length = 586 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 112/572 (19%), Positives = 213/572 (37%), Gaps = 29/572 (5%) Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 ++ + +S +ED + + + + L + ++ Sbjct: 33 AIVMAVGFASFREFAASQHAREDLIYSSSIRAELQSIYEQLLTVESATRGFIITGEAEFR 92 Query: 312 SAYFDEGENLTPETVDKCPIPF----FVYSHGNLFYANPSFLLLTK----YKSVDDIEIA 363 ++ + L + L L + D A Sbjct: 93 PPLDEDRTRILARIAAVTKFAVERPEHTDDLARLKRLAEAELRLLGEMIDARMHSDATPA 152 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G + + + L D A + ++ A +AR ++ + T + A Sbjct: 153 GSILQVRQSKGLMDQIAETVESIAEAE--IGAINARTQEVRVVGQR-TKTTLLALLGAAI 209 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + V R +R + + + +IL + D I +N EG I S N A ++ Sbjct: 210 AVVFGSTAVMLTHLVGRRRAERALGDALSRQRAILASAIDSIVTVNVEGRIESANPATTR 269 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 L G+ E+I KP + ++TE+ S + +G K+ + + + Sbjct: 270 LLGWQPEEIAGKPLGTLFSLPEGTTPTDFMTELSSTAKDGGGVRELIGLRKDGGTVPVDV 329 Query: 544 IIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 I ++ S +HDI+E K+ + K++F++ VSHE+RTPLT Sbjct: 330 AIGRMRDSGGQNLVAVLHDITERKRAEV--------------MKNEFVSTVSHELRTPLT 375 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 +I G ++ G L ++ ++ ++ND+LDI K++S + + Sbjct: 376 SIAGSLGLLAGGATGSLPEGAQR-LVTIASQNCRRLVRLINDILDIEKMQSSGITFARDT 434 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 VSL E ++ +A E ++ + R+ D + Q+ N+LSNA+ F+P+ Sbjct: 435 VSLAEVAERSVEQNSGFALEHQVALTLEVEPGDLRVTGDADRLIQVLTNLLSNAVKFSPA 494 Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G + +S + V VRD G+G+ F Q NS + GTGLGL +A Sbjct: 495 GSTVEVSVARR-GDHVRATVRDHGMGIPESFRSAIFTRFAQADNSDTRQRGGTGLGLAIA 553 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 + + D + G + GT + P + Sbjct: 554 REIADHHDGTLSFETEEGVGTAFHLDLPALEA 585 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 35/333 (10%), Positives = 80/333 (24%), Gaps = 25/333 (7%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G ++ + + +G ++ G L + S P + + +L G L Sbjct: 257 EGRIESANPATTRLLGWQPEEIAGKPLGTLFSLPEGTTPTDFMTELSSTAKDGGGVRELI 316 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR------------ALGK 198 + VP+D+A + + ++H L Sbjct: 317 GLRKDGGTVPVDVAIGRMRDSGGQ----NLVAVLHDITERKRAEVMKNEFVSTVSHELRT 372 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------AHKD 251 L L + G + E + R+ ++ + + Sbjct: 373 PLTSIAGSLGLLAGGATGSLPEGAQRLVTIASQNCRRLVRLINDILDIEKMQSSGITFAR 432 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 D + + + E++S E + L + + L Sbjct: 433 DTVSLAEVAERSVEQNSGFALEHQVALTLEVEPGDLRVTGDADRLIQVLTNLLSNAVKFS 492 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 A ++ D + G + D GG L Sbjct: 493 PAGSTVEVSVARRG-DHVRATVRDHGMGIPESFRSAIFTRFAQADNSDTRQRGGTGLGLA 551 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + ++ + + A L ++ Sbjct: 552 IAREIADHHDGTLSFETEEGVGTAFHLDLPALE 584 >gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS] gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS] Length = 711 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 174/369 (47%), Gaps = 7/369 (1%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQ 503 + + + +L T G+ + +G +++ N A +++ G + + L+ + + + Sbjct: 64 QNLHDSQQNIQYLLNTTLIGLGLWQLDGTLVTINPAYAQMIGRSITETLKLNYWNDIVVE 123 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDI 561 + L + + EK K+ + +++ + + Y + +I Sbjct: 124 ENITNEQTQLQVLKVGECYGPFEKEF--RHKDGYYVPVKLSARIIEREGEYYAWSHVENI 181 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 S K +L AKK AE+ + KS FLA +SHE+RTP+ I+G++E + + NP Sbjct: 182 SGQKWMIMELKQAKKKAEEANISKSLFLANMSHELRTPMNTIVGYTE-MLEEEIKECPNP 240 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++ I + +L +V+ +LDISKIE+GK++L+ E L + I+ +Q + Sbjct: 241 NLLQDIKSIHAAAKHLLGLVDGILDISKIEAGKIHLYSERFDLKTMIQNTITTIQPIIEK 300 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740 K ++ SF ++ DL V+QI +N+LSNA FT G + + T + + +R Sbjct: 301 KANALQISFDEDLGEAYTDLTKVRQILINLLSNASKFTDQGIITLEVRRQRTQGDWITIR 360 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G+GMTN + + F Q S + GTGLGL + K G +I S K Sbjct: 361 VSDEGIGMTNEQQANLFQVFTQADASISRKYGGTGLGLAITKHFTQMLGGTIHIESEFGK 420 Query: 801 GTLIEIIFP 809 G+ ++ P Sbjct: 421 GSHFKVRLP 429 >gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato T1] Length = 746 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 130/607 (21%), Positives = 236/607 (38%), Gaps = 28/607 (4%) Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279 + + Q+ R+ + + + + + LLT +E LP + + Sbjct: 10 AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 69 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337 +S E L L G Sbjct: 70 ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 129 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L ++ L STLL A + +ML + Sbjct: 130 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 183 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 AR+H +Q N + + + + + +R + +L Sbjct: 184 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 243 Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ + F+VF Sbjct: 244 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 301 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 + + + + K+ ++I S +S DIS+ + + Sbjct: 302 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 361 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I Sbjct: 362 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 416 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTS 689 R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A + I + Sbjct: 417 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 476 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V DTG G+ Sbjct: 477 YLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGIA 535 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + KPF ++ EGTGLGL L+K+M++ G + +T +G + P Sbjct: 536 PERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALP 593 Query: 810 LYDTSHP 816 P Sbjct: 594 FVAVHAP 600 Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 68/265 (25%), Gaps = 20/265 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 254 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 312 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 313 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 370 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 371 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 428 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + K+ + + E P Sbjct: 429 EVLDIARIEAGHVSLSLEPVSLSS----VLKETLVLVSPMAADGNIELKELPYLPDELGV 484 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339 + + L ++ Sbjct: 485 IADRQRLVQVLLNLLSNAIKYNRPD 509 >gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1] Length = 1222 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 108/750 (14%), Positives = 229/750 (30%), Gaps = 73/750 (9%) Query: 87 WNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144 + ID + ++ G A +++G D + L + Sbjct: 365 FRIDRAARFEAVNSAWLAMHGFTRAEEVLGQDYLTTQAQEDADAAADVVRRALAGEAIAA 424 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 G+ +G+ Y + P+ R RE GF I A K L Sbjct: 425 GEFRRRRADGSTGYH--TFSLHPVR-RGREIVAIEGFLI--DTTPLKQAMADYKMLFDTM 479 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + D+ P R DV+ + Sbjct: 480 LDGFALHEIVRDEQGRAVDLRYTAVNPAFERQTG---------IRAADVVGRRMSEAIPG 530 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEG 318 E E ++Y L + + + + + Sbjct: 531 MEPEWMEAYRLVAETGEPRVFERYSQPLNRHFTVSAFRPSVGQLVCVFVDITARKLAEIE 590 Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 V++ P+ + G + Y NP F T Y +E G + + + + Sbjct: 591 LRKLSRAVEQSPVSVIITETSGEIEYVNPWFTETTGYS----LEEVRGKNPRVLSSGETS 646 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + + + + + ++ + Sbjct: 647 GETYREMWQAITSGREWRGEFHN---RRKDGTLFWEAATIGPIFDDEGKISRFLAVKEDI 703 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ + ++L+ DGI + + ++ NRA +++G P + L Sbjct: 704 TERKRASERIREQ----AALLDVAHDGILVTTMDRVVTYWNRAAERMYGIPATEALGHTL 759 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 + V ++ + + +R+ + ++ Sbjct: 760 DELIPGENSEVRREEWQRLIERGEWSG---ERQHVVRSGGTIDVRVHATLVRNAAGQPTS 816 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + D++ K+ + + A++I + V+H++ LT I+ E+++ Sbjct: 817 VLIVVTDVTASKRMEKQFLRAQRI-----ESLGALASGVAHDLNNVLTPILMSVELLR-- 869 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 N + + S DIV LL + P+++ + + Sbjct: 870 --PLAQNQADRDMLQLLSDSARRGSDIVQQLLLFGR----GSESPRVPLNVAGILKDTGR 923 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 L++ +K I+ ++ + AD + Q+ LN+ NA P GG++ I+ + Sbjct: 924 LMRETFPKK-IVQTVYAPADLRLVEADRTQIHQVVLNLCVNARDAMPEGGRLQITAENVE 982 Query: 734 --------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 V + VRDTG G++ L+K PF G+GTGLGL Sbjct: 983 VEEELAQRHAAKGAGRYVRITVRDTGAGISPENLDKIFDPFFTTKP----VGQGTGLGLA 1038 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +V + G + S +G E+ P Sbjct: 1039 TVLGIVRGHGGFVDVKSQLGRGAAFEVYLP 1068 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 52/514 (10%), Positives = 132/514 (25%), Gaps = 55/514 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D G L +E G ++ + D+ + ++ +T Sbjct: 245 ETDESGRLIAANEAFLMATGYSMPELATRTIADLEANESPEDVQRHLAQVRLAGRVRFET 304 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L +G + +++ +P R I+ N + + +++F Sbjct: 305 RLRAHDGRLIDFEVNVVHVPGRG--------RFVSILRDITQRNRAEQVLRLSEERFREA 356 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + S + D L T+ + Sbjct: 357 IEHAGAGYFRIDRAARFEAVNSAWLAMH-----GFTRAEEVLGQDYLTTQAQEDADAAAD 411 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQ------NNSKESFEYLSHRNHPSLSAYFDEGENL 321 + I ++ +++ G+ + + E ++ + + Sbjct: 412 VVRRALAGEAIAAGEFRRRRADGSTGYHTFSLHPVRRGREIVAIEGFLIDTTPLKQAMAD 471 Query: 322 TPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 D F ++ NP+F T ++ D + + + Sbjct: 472 YKMLFDTMLDGFALHEIVRDEQGRAVDLRYTAVNPAFERQTGIRAADVVGR-----RMSE 526 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 A + ++ L + F + P Sbjct: 527 AIPGMEPEWMEAYRLVAETGEPRVFERYSQPL-----------NRHFTVSAFRPSVGQLV 575 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + ++ + ++ +L +E + + I G I N ++ GY +E+ Sbjct: 576 CVFVDITARKLAEIELR----KLSRAVEQSPVSVIITETSGEIEYVNPWFTETTGYSLEE 631 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + K V T + + ++ K+ L I + Sbjct: 632 VRGKNPRVLSSGETSGETYREMWQAITSGREWRG--EFHNRRKDGTLFWEAATIGPIFDD 689 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + DI+E K+ ++ + + Sbjct: 690 EGKISRFLAVKEDITERKRASERIREQAALLDVA 723 Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 92/308 (29%), Gaps = 33/308 (10%) Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--A 344 G L S R + A E E + P P VY L + Sbjct: 73 WGAGVLALIGGHRVAQASVRERMRMVAALRTSEASYRELFENSPNPMLVYDVATLQFLAV 132 Query: 345 NPSFLLLTKYKSVDDIEIAGGLST---------LLDAPKLSDNNAIKPVMLYRSDRTCIA 395 N + Y D + + G + P R D +C+ Sbjct: 133 NDAAQRQYGYAREDFLRLTVGDIHPAAEMQQLESTLRTERPPLAFSGPWTHLRHDGSCLR 192 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 H + W+ + + + + + +E + + Sbjct: 193 VEVSSHALSWDGRAARCVVV-------------------TDISEQQRLNATVEEQAVTYQ 233 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++L A DG+ + G +++ N A GY + ++ + +P + +L + Sbjct: 234 TLLSAALDGVVETDESGRLIAANEAFLMATGYSMPELATRTIADLEANESPEDVQRHLAQ 293 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + + T + +L+ + + +P + + DI++ + + L ++ Sbjct: 294 VRLAGR---VRFETRLRAHDGRLIDFEVNVVHVPGRGRFVSILRDITQRNRAEQVLRLSE 350 Query: 576 KIAEKESS 583 + + Sbjct: 351 ERFREAIE 358 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 45/504 (8%), Positives = 118/504 (23%), Gaps = 40/504 (7%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A +++ + G + + + D+ + + + G T Sbjct: 125 ATLQFLAVNDAAQRQYGYAREDFLRLTVGDIHPAAEMQQLESTLRTERPPLAFSGPWTHL 184 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G+ L V + AL R +V A + + L Sbjct: 185 RHDGSCLRVEVSSHALSWDGRAAR------CVVVTDISEQQRLNATVEEQAVTYQTLLSA 238 Query: 211 KKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 E + + M + + +++ Sbjct: 239 ALDGVVETDESGRLIAANEAFLMATGYSMPELATRTIADLEANESPEDVQRHLAQVRLAG 298 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + + + + + + E E ++ Sbjct: 299 RVRFETRLRAHDGRLIDFEVNVVHVPGRGRFVSILRDITQRNRAEQVLRLSEERFREAIE 358 Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 +F + N ++L + + +++ G L + + A V Sbjct: 359 HAGAGYFRIDRAARFEAVNSAWLAMHGFTRAEEVL---GQDYLTTQAQEDADAAADVVRR 415 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 + A R + + S + E + G + + Sbjct: 416 ALAGEAIAAGEFR----RRRADGSTGYHTFSLHPVRRGREIVAIEGFLIDTTPLKQAMAD 471 Query: 447 MEIEVMQLCSILEATSDGI----AIINREG-----IILSTNRAVSKLFGYPVEDILRKPF 497 + + DG + + +G + N A + G D++ + Sbjct: 472 -------YKMLFDTMLDGFALHEIVRDEQGRAVDLRYTAVNPAFERQTGIRAADVVGRRM 524 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 + + + + E+ S + ++ P Sbjct: 525 SEAIPGM-EPEWMEAYRLVAETGEPRVFER---YSQPLNRHFTVSA---FRPSVGQLVCV 577 Query: 558 MHDISEWKQEKNKLSHAKKIAEKE 581 DI+ K + +L + E+ Sbjct: 578 FVDITARKLAEIELRKLSRAVEQS 601 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 44/398 (11%), Positives = 92/398 (23%), Gaps = 25/398 (6%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSL 243 R A + + + L E V F + + + L Sbjct: 91 VRERMRMVAALRTSEASYRELFENSPNPMLVYDVATLQFLAVNDAAQRQYGYAREDFLRL 150 Query: 244 TEYYAHKD---DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 T H L++ S P H + + + + + Sbjct: 151 TVGDIHPAAEMQQLESTLRTERPPLAFSGPWTHLRHDGSCLRVEVSSHALSWDGRAARCV 210 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359 L+A +E + G L AN +FL+ T Y + Sbjct: 211 VVTDISEQQRLNATVEEQAVTYQTLLSAALDGVVETDESGRLIAANEAFLMATGYSMPE- 269 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + S + + + R RL + + Sbjct: 270 LATRTIAD---LEANESPEDVQRHLAQVRLAGRVR-FETRLRA---HDGRLIDFEVNVVH 322 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 P I + ++ + + + +E G I+R + N Sbjct: 323 V----PGRGRFVSILRDITQRNRAEQVLRLSEERFREAIEHAGAGYFRIDRAARFEAVNS 378 Query: 480 AVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 A + G+ E++L + + Q + L+ + + Sbjct: 379 AWLAMHGFTRAEEVLGQDYLTTQAQEDADAAADVVRRALAGEA--IAAGEFRRRRADGST 436 Query: 539 LSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSH 573 + + + D + KQ Sbjct: 437 GYHTFSLHPVRRGREIVAIEGFLIDTTPLKQAMADYKM 474 >gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium IMCC9480] Length = 762 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 168/391 (42%), Gaps = 19/391 (4%) Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPF 497 ++ K + Q S++ G +L + + L G+PV + + Sbjct: 232 RQLFKNALRDRERQYRSLIANLPGAAFRRRVGGPMLFVSDGIETLSGWPVASFFQGQQDL 291 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 + + + + ++ R T+E + + + + Sbjct: 292 RQLVHPDDQPAVQEVWQQAIASSGRYTVEYRLMLRDGSHLQVWESGSVLHADHTDHIDHA 351 Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + DIS+ + K + AK AE+ ++ KS FL+ +SHEIRTP+ IIG + + Sbjct: 352 GDIWVDGVIFDISQQHRIKEQWRAAKTCAEQANAAKSVFLSTMSHEIRTPMNGIIGMTGL 411 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + N E+A I+ S + +L ++ND+LD S+IE+GK+ + +L V+ Sbjct: 412 LLETPL----NTEQREFARIIETSADALLTVINDILDFSRIEAGKLMVESVAFALPATVA 467 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 I ++ A +K + + + +P ++ D ++QI LN+L NAI FT +G ++ + Sbjct: 468 GCIDVIAGKACDKGLALNCTIDPALPVFVMGDAGRLRQILLNLLGNAIKFTATG-KVALH 526 Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788 T V V D+G+G+ + PF QI S + GTGLGL + K +V+ Sbjct: 527 VTPVLAGAVRFVVADSGIGIDQKNAAELFIPFHQIDGSITRKYGGTGLGLSITKRLVELM 586 Query: 789 MGKFYIFSTPAKGTLIEIIFPLY---DTSHP 816 G S P +G + PL S P Sbjct: 587 GGTIGFESVPGQGATFWVELPLAVAEPVSAP 617 >gi|86607271|ref|YP_476034.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab] gi|86555813|gb|ABD00771.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab] Length = 667 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 177/382 (46%), Gaps = 26/382 (6%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ +L +++ + D +++ E +L N A S++FG+ E +L KP L ++ Sbjct: 279 EELAAAKAKLETLVFSIVDAAILLDAEFRVLLLNPAASRMFGWEGEPVLGKPLPELLPED 338 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561 + L +I ++ E S ++++ + + P +T+ DI Sbjct: 339 LRQQLARPLMQIAR-GDQEAEEIRVNLSGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDI 397 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + + + K+ F++ +SHE+RTPL +I F E + + + Sbjct: 398 TR--------------EVELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSPE 442 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 ++Y +R + + +VND+LD+S++ESGK HFE V + + + + L A + Sbjct: 443 ERLDYLEIANRETDRLTRLVNDVLDLSRLESGK-QYHFEAVDIAAVIEQTLRTHHLQARD 501 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEE--- 736 K I +R ++P + + + Q+ N+L NA+ FTPSGG + + ++ Sbjct: 502 KGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAHPVVQADGSPQA 561 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 V + V DTG+G+ + E+ F ++ N + EGTGLGL + + +++ + + + S Sbjct: 562 VRVAVADTGIGIAPEDQERIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHHTRICLES 620 Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818 +G+ LY + P + Sbjct: 621 KLEQGSTFWFDLHLYTENGPLE 642 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 27/253 (10%), Positives = 62/253 (24%), Gaps = 15/253 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA + ++ + G ++G L ++ + R + + Sbjct: 302 LDAEFRVLLLNPAASRMFGWEGEPVLGKPLPELLPEDLRQQLARPLMQIARGDQEA-EEI 360 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + G V I + P+ R+ GIV + L + + S++ Sbjct: 361 RVNLSGPTKRV-IRILLSPVSDPRRQ----NLKGIVMTVQDITREVELNEAKAQFISNIS 415 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------KYPLL 262 + K + + + E + D L L Sbjct: 416 HELRTPLFSIKSFIETLYE---YGEQMSPEERLDYLEIANRETDRLTRLVNDVLDLSRLE 472 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + ++ + I T ++ + + NL Sbjct: 473 SGKQYHFEAVDIAAVIEQTLRTHHLQARDKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLL 532 Query: 323 PETVDKCPIPFFV 335 + P V Sbjct: 533 GNALKFTPSGGLV 545 >gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 505 Score = 331 bits (848), Expect = 4e-88, Method: Composition-based stats. Identities = 99/450 (22%), Positives = 198/450 (44%), Gaps = 8/450 (1%) Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFP 425 +L L + + + L + D + + +I E + A+ + + Sbjct: 58 DLVLLNSTLPEIDGYEVCRLLKRDESNKVLPVIMITSITDEDEKTKAIESKADDLLVRPV 117 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + + + ++ E Q ++ I +I+++ + N+ + Sbjct: 118 DILELTTRVRSLLRMKELHDQLVKEKDQAQKYVDVAGSIIGVISKDLKVTLVNQKACDVL 177 Query: 486 GYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLR 542 GY ++I+ K F FL + ++ + + EK L T EE+L+ Sbjct: 178 GYEKDEIIGKNWFDAFLPGYVRERIKEGYIGVIEGKLEPPEYSEKPILNKTNEERLIFWH 237 Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 ++ + ++ + DI+E K + + A + E + K FL ++HE+RTPL Sbjct: 238 DVVLRDKDNNIIGTISSGDDITERKIAEKAMEEANRELELLDNIKDQFLTNLTHELRTPL 297 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 +I GF+E++ GP+ N + + R+ + +V LL +S + + + + Sbjct: 298 ISIKGFTELMLEDHMGPI-NDAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKNIKYNMD 356 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 +SL + E + +K + I + ++P IL D +K++ ++L NAI FTP Sbjct: 357 VLSLTKITEEILETFTAPILKKGLTIERNIQTDLPTILGDKDHLKRMINHLLDNAIKFTP 416 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GG+I IS +E VI+ + DTG+G+ L F Q+ S + + GTG+GL + Sbjct: 417 EGGKIGIS-ALHDSESVIINIEDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGTGVGLHI 475 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 K +++A+ G + S +GT+I + P+ Sbjct: 476 CKKIIEAHKGSLSVSSKIGEGTIISVKLPI 505 Score = 45.4 bits (106), Expect = 0.038, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 12/143 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN------NHIGDLLKRQNT 142 I + ++++ +G ++IG D ++ I L+ Sbjct: 160 ISKDLKVTLVNQKACDVLGYEKDEIIGKNWFDAFLPGYVRERIKEGYIGVIEGKLEPPE- 218 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + K L L D+ + ++ G G + ++ Sbjct: 219 YSEKPILNKTNEERLIFWHDVV---LRDKDNNIIGTISSG--DDITERKIAEKAMEEANR 273 Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225 + L IK + + Sbjct: 274 ELELLDNIKDQFLTNLTHELRTP 296 >gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239] Length = 571 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%) Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++EI + + L +IL++ G+ +R+ +L N K+FG E I K Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 ++ + E + + K+L +R I P Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ K+ + + +S F+A +SHE++TPLT+I GF+E ++ Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++ + ID + + ++ D+L + +IE + + E ++DE + + L+ Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + I +N ++ D KQ+ LN++SN++ +T GG++ + ++ + Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +IL + D G+G++ +L + + F ++ ++ GTGLGL + K +V G+ + Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554 Query: 796 STPAKGTLIEIIFPL 810 S GT I I P+ Sbjct: 555 SELGVGTKIVITIPI 569 >gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis DSM 45221] Length = 885 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 182/465 (39%), Gaps = 24/465 (5%) Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE------NSLAMTFIPFEKANQ 423 + + W+ + + Sbjct: 12 YFGAESRGVALESIFGFREAKGFYAVLEQLAIGKSWSGRVSALRSRHGISSVELMIHRDV 71 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV-- 481 + + + E+ L +L+ T + + + +G + TNRA Sbjct: 72 EDSDRLWVYTLEHPSVDGVLRFSSRSEMQLLQVLLDNTLEYVFFRDLQGRFILTNRAFDV 131 Query: 482 SKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + G E + + F+ T S ++ +LS + + Sbjct: 132 AVSTGMGRPESPVGQRLDDFISSETASWIHDIDQRVLSAGVPSV-NNVAHFVFNNGTRHW 190 Query: 541 LRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L++ + + DIS+ K+ +++L A K A+ + K +FLA +SHEI Sbjct: 191 LQMSTVPVRSGQGLVVGSVSVARDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEI 250 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP+ +IG SE+ + + Y + + + GN +L +VND+LD SKIE+G++N Sbjct: 251 RTPINGVIGASELCQETEL----DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLN 306 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L + + + E I +K I + S + +P+ ++ D +KQI N+L NA Sbjct: 307 LEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNA 366 Query: 716 IHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + FT +G +I++S + +VRDTG+G++ E F Q S R Sbjct: 367 VKFTEAG-EIVLSAHIVERSAQLAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRY 425 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 GTGLGL + K + + G + S +G+ + P +S P Sbjct: 426 GGTGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVPFELSSTP 470 Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 20/273 (7%), Positives = 60/273 (21%), Gaps = 13/273 (4%) Query: 80 PRTVRFTWNIDAHGYLKEISEEL--PKTIGN-YAFKMIGMRLCDVSDILHID-PNNHIGD 135 T+ + + D G + + G +G RL D ++ Sbjct: 107 DNTLEYVFFRDLQGRFILTNRAFDVAVSTGMGRPESPVGQRLDDFISSETASWIHDIDQR 166 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 +L + + + ++ +P+ S G + + Sbjct: 167 VLSAGVPSVNNVAHF-VFNNGTRHWLQMSTVPVRSGQGLVVG--SVSVARDISDLKRTES 223 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHK 250 K+ + K + + + + + + + Sbjct: 224 ELMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETELDAEQRAYLDTVIQC 283 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + L + +L + + + ++ K+ L Sbjct: 284 GNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDR 343 Query: 311 LSAYFDEGENLTPETV-DKCPIPFFVYSHGNLF 342 + Y + + G + Sbjct: 344 MPKYVIGDPTRLKQIFYNLLGNAVKFTEAGEIV 376 >gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 1098 Score = 330 bits (847), Expect = 4e-88, Method: Composition-based stats. Identities = 141/734 (19%), Positives = 272/734 (37%), Gaps = 50/734 (6%) Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE---------GTNL 157 G + K+ G + I D H LL+ + + +T W G Sbjct: 133 GQFEVKLSGKSTGNEIRIYAADQPGHYTQLLRSKPNYDPRTRPWYQSAVKSKTASWGGIY 192 Query: 158 YV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + + A+LPIY G + K + + E + Sbjct: 193 KLFTTPKYVLNASLPIYDDGGNLLGVAAVDFS--LTGISQYLRTLKIGRTGETFILERQT 250 Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 G + + + +N V D+L L L + Sbjct: 251 GLLVGSSATQQPYIIANSTAPIIDQNPV---RVQAIASSDILTRRTADFLQQHFVDLTQI 307 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + ++ + ++Q+ + ++ ++L P + D+ T T+ C Sbjct: 308 TEKQQLDFDIEGQRQFLQIVPMK-QQGLDWLIVVVVP-ERDFMDQINANTRSTILLCLCA 365 Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 F + + + A+ + + S AG L + ++ N++ + + Sbjct: 366 FALATGLGILTAHWITQPILRLGSTAKAIAAGNLDQKVSVNSTTELNSLAESFNLMAHQL 425 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + A T + T EK Q + + R + ++ Sbjct: 426 RESFLALARTNEELESRVTQRTTELGEKNAQLQREIRVSEAAQRG--RRQVEEALKTSEA 483 Query: 453 QLCSILEATSDGIAIINREGIILSTNRA---VSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508 +L + A +D + + + EG + +++ F Y + K L + ++ Sbjct: 484 ELRLMFAAMTDMVVVFDAEGRYQKYVQTKYVLTQSFAYKPDMDRIGKKVDEVLPKEIANL 543 Query: 509 MNHYLTEILS--------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + + + L R+ + S K + + L + D Sbjct: 544 ILDAIQQALHLREEPRNPDGSRKNVFVEYHLSNKN-RETWFLASVSPLSD-NTVLWVARD 601 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 I++ K+ + L AK+ A+ + KS FL+ +SHE+RTPL I+GF++++ R N Sbjct: 602 ITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIILGFTQLLLRNRS---LN 658 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 + EY + I+RSG +L ++ND+L++SKIE+G++ L L + + L A Sbjct: 659 SQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLYGLLDRLQQMFALKAQ 718 Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735 + + + + IP+ I AD ++Q+ +N+L NAI FT G Q+ + + Sbjct: 719 SRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFTRIG-QVTLRVETPNQNITPD 777 Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + V DTG G+ + + + +PF Q Q EGTGLGLP+++ V G Sbjct: 778 EPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAG-QKAQEGTGLGLPISQRFVQLMGGDI 836 Query: 793 YIFSTPAKGTLIEI 806 + ST KG++ Sbjct: 837 RVNSTLGKGSIFTF 850 >gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium medicae WSM419] Length = 772 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 114/544 (20%), Positives = 222/544 (40%), Gaps = 50/544 (9%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360 Y+ + A F E + + + + + + S + + Sbjct: 240 YIQAKRARDADAIFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMPGDASV 299 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 G + L+ D+ I V + + ++ ++ + + + Sbjct: 300 LSFGDAARLMH----VDDRGIYRVARAIARGSERQID-QVFRMRHADGHYVWLRARAQVI 354 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 GI + + ++ +L +E TS+ + ++ ++ N Sbjct: 355 RTVSGR-THLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTH 413 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 + + P ++ + + + ++ R + + +E+ L Sbjct: 414 FQQAWQLPDHVLVPGTERTIV---QAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQ 470 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------- 573 + + DI+ K+ + +L Sbjct: 471 INERRTR---DGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLEQQKAELS 527 Query: 574 --------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 K+ AE + KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ +Y E Sbjct: 528 VANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHE 587 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 Y+ I SG +L+++ND+LD+SKIE+G M + E + L + E + + A +K I Sbjct: 588 YSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQKNIR 647 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + ++ + + AD R++KQ+ LN+LSNA+ FT GG+I + V L + D+G Sbjct: 648 VVQQVSSGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIADSG 705 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ L+K +PF Q+ + G+GLGL +++++ + G I ST GT+I Sbjct: 706 IGIPRDALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGSIKIHSTENVGTIIS 765 Query: 806 IIFP 809 + P Sbjct: 766 VRIP 769 Score = 48.9 bits (115), Expect = 0.004, Method: Composition-based stats. Identities = 31/378 (8%), Positives = 87/378 (23%), Gaps = 15/378 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + + +G + + D + ++H+D + + R + Sbjct: 271 LWDFDLDNRRLFWSRSMYEMLGMPGDASV-LSFGDAARLMHVDDRGIYRVARAIARGSER 329 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I + + GI + D++ Sbjct: 330 QIDQVFRMRHADGHYVWLRARAQVIRTVSGR---THLIGIAMDVTEQHRLAQRYAEADQR 386 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + ++ + V Sbjct: 387 LADAIECTSEAFVLWDKHDRLVMCNTHFQQAWQLPDHVLVPGTERTIVQAAAARPVVERR 446 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ + ++ + ++ S + L Sbjct: 447 IADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 506 Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 D L AN ++ + + + L+ + + N + Sbjct: 507 ATIGDLSASRITLEQQKAELSVANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAIL 566 Query: 382 KPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + ++ + I E Sbjct: 567 GFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHM-----RITR 621 Query: 440 TRINKRKMEIEVMQLCSI 457 RI+ + E ++ +I Sbjct: 622 ERIDLAPLIEETLRFTTI 639 >gi|197295473|ref|YP_002154014.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] gi|195944952|emb|CAR57564.1| hybrid two-component system kinase-response regulator protein [Burkholderia cenocepacia J2315] Length = 1380 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 135/787 (17%), Positives = 277/787 (35%), Gaps = 70/787 (8%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 F+ E + T Q + S Y + + P +V ID Sbjct: 514 FQVESGASDERAAPQPPLRVPTSPAQRNFS---YAELHQRALETYSPPSV----IIDKES 566 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 + +S+ + + + ++ + V L +D I L+ + + W + Sbjct: 567 NVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRVKWAHD 626 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 I++ P + + + L D+ + E + Sbjct: 627 --TRVSWINMTVRPFHDK------------------VANAEFLLVVFDEVAGRMTEEDQA 666 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 +S + P +++ ++ E A + +T L S E E Sbjct: 667 ETSGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEELQAINE 715 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + + + + K+ ++ + + R + A D + + Sbjct: 716 ELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI----ATV 771 Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 FV + P+ + D ++ L P L+D+ L +R Sbjct: 772 FVDKEIRVKRFTPNATAIFNLIDTDLGRSLFHITHALRYPTLADDVRQSFQSLRLIERE- 830 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 I+ M +P+ A+ + D + + Sbjct: 831 ---------IESEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHHAEEAARAGEQR 879 Query: 454 LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 L + ++T D I I + G I+S N ++FGY E+++ + + E N + Sbjct: 880 LRLVAQSTKDYAIIIQDGNGAIVSWNAGAERIFGYTEEEMIGQDVELIYEPNDRQALVPM 939 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ---- 566 ++ + + TK+ + + ++ + + + ++ + D++ KQ Sbjct: 940 REREVATREGRA-DDERWHRTKDGRRIFCSGVVTPISDTSFNGFAKIVRDMTLRKQSDDA 998 Query: 567 ---EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + A++ A + K +F+A +SHE+R PL I SE + + P Sbjct: 999 NREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVKSE-MLPRLPETRDIPAV 1057 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E A+ I ++ I++DLLD+S+I++GK+ L V L + + + + Sbjct: 1058 REAADSIRQAVRAQAQIIDDLLDLSRIQTGKLALELGRVDLTAMLRGIADTCERDVHARG 1117 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 ++++T LAD +QI N++SNA+ FT S G+I++ H + + V D Sbjct: 1118 LVLKTELPTEPAIALADPVRCEQIFWNLMSNALKFTQSHGEIVVRLAHE-GRMLRVDVID 1176 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGT 802 G G+ L F Q P + G G+GL L + +V+ + G+ S +GT Sbjct: 1177 DGQGIDGDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHGGRIAAASDGQGRGT 1234 Query: 803 LIEIIFP 809 + + P Sbjct: 1235 TMTVWLP 1241 >gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 589 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 159/363 (43%), Gaps = 26/363 (7%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + Q+ ++L + +G+ ++ I+S N+A ++ K + Sbjct: 248 RQKNQMEAVLASMVEGVIALDTGQRIISMNQAAGRMLSCDPRTAAGKTIQETVRNTDFHD 307 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 +++ +E+ + S K E+ +R + + + + ++D+++ + Sbjct: 308 FV-----LMAFRSESPVEEELVLSGKHERYFKVRGMTLRDAQAQRMGALVVLNDMTQVTK 362 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + + + DF+A VSHEI+TP+TAI GF E + + + Sbjct: 363 LE--------------NMRRDFVANVSHEIKTPITAIKGFVETLLDGALD--DKENAKRF 406 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 I R + + IV DLL++S+IE +G L E S+ EA+ A+ + + A + I Sbjct: 407 LEIISRHTDRLKAIVEDLLELSRIEQAGGRELPLERASVKEALETAVQVCEARAISENIT 466 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + +++ + D ++Q +N+L NA+ ++ G + + EV++ V D G Sbjct: 467 VEMDCPDDLTAVF-DPTMIEQAVVNLLDNAVKYSEEHGVVRVGAKAE-GGEVLIWVEDEG 524 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G++ L + + F ++ ++ GTGLGL + K ++ A+ G + S KG Sbjct: 525 PGISEEHLPRLFERFYRVDKARSRNLGGTGLGLAIVKHIMAAHGGHVSVKSEKGKGAAFT 584 Query: 806 IIF 808 + Sbjct: 585 LHL 587 >gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium TW-7] Length = 806 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 113/541 (20%), Positives = 204/541 (37%), Gaps = 30/541 (5%) Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352 + F + + VD P+ + S G+ + N F +T Sbjct: 147 EIAQKQISTEASEKQRFKQAFLGEKEKFEKFVDLAPVGIAINSISDGSFEFVNEEFGRIT 206 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y SVD++ P+ + + + L + Sbjct: 207 GY-SVDELNQMDYWQ---LTPEKYEKQEHEQLELLAKYGQYGPYQKE---YIHKNGHVYP 259 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGI 465 + + + E + + + ++++++ ++ ++ G+ Sbjct: 260 VLLSGIKITDSKGETF-IWSVVQDISHQKQSEQQIKTAKEKVDSFALRMQLANDSAGIGV 318 Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 ++ + L + + KL+G + + + + + L E ++ Sbjct: 319 WELDLKTEKLVWDSWMYKLYGISELEFSCTYQAWLDRVHVDDVEHNERMLDEAINGVGIY 378 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 E + + + I + + +D++E KL AK AE Sbjct: 379 DPEFRVVHPDGNIRTIKASAEILRDSHGAAIKVVGVNYDVTEKVDAIRKLFDAKLAAENA 438 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KSDFLA +SHEIRTP+ AI+G +++KN SG +L I+ Sbjct: 439 AQSKSDFLANMSHEIRTPMNAILGGLQLLKNTSL----PEELRAVLKNASYSGQSLLTII 494 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700 ND+LD SKIES ++ L SL E + + +EKRI + + D Sbjct: 495 NDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSLVSEKRIGFTVNKDESYYEYWVGD 554 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAM 757 L VKQI LN+ SNA+ FT G + I+ + + E + L V D+G+GM+ E Sbjct: 555 LVRVKQILLNLSSNAVKFTDKGS-VKINASSKIYEGKEAIYLEVVDSGIGMSKEVTEHIF 613 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + F Q +S + GTGLG+ + ++V G+ I S GT + I PL ++ Sbjct: 614 ERFTQADSSTTRKYGGTGLGMSITISLVKMMGGEIDIQSKQGLGTTVTIKLPLPKANNIA 673 Query: 818 D 818 D Sbjct: 674 D 674 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 51/165 (30%), Gaps = 10/165 (6%) Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE- 490 +E E+ + ++ E + I +A++D ++I+ G + N+A + G Sbjct: 8 LEQENTKLKRAIAELTYERDKYKKIFDASADAYSVIDLSSGKFIECNQAAIDMHGVNSMG 67 Query: 491 ---DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIII 545 ++ + L+ I + + S + + + Sbjct: 68 NFLNLSPADLSPELQPCGNRSDALAKAHINCAIEQGFHSFKWIHSRLDGTTFNCLVSLTG 127 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + S DIS+ + A ++ K FL Sbjct: 128 LFIEGSQLILAVGRDISD---IEIAQKQISTEASEKQRFKQAFLG 169 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 6/118 (5%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150 G + ++EE + G ++ M ++ + + +LL + + Sbjct: 192 DGSFEFVNEEFGRITGYSVDELNQMDYWQLTPEKYEKQEHEQLELLAKYGQYGPYQKEYI 251 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G P+ L+ + I E + +V K +K Sbjct: 252 HKNGHVY--PVLLSGIKITDSKGE---TFIWSVVQDISHQKQSEQQIKTAKEKVDSFA 304 >gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 1059 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 104/517 (20%), Positives = 199/517 (38%), Gaps = 32/517 (6%) Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 V P F+ + N + + S DA + + Sbjct: 195 SGVVLAASSPAFILKSDRAWPWNRFTGEIRRQFSDYRFANGVPERLPFDAHQSVIQLDGR 254 Query: 383 PVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 L R D + L + + + Sbjct: 255 RYSLSRVDFDWNDPSGPWTLITLGDLDTLLPGEQVLLIEGLSALVFLLLLWGGLRRLADA 314 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--- 494 + + ++E +L L++ + G+ N + N ++ GY + + + Sbjct: 315 RRHKRDVAQIEQSEQRLDMALQSGALGLWDWNLSLGTVINNDVWLQILGYSKQQMEQAFG 374 Query: 495 ---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIK 546 + +T + + + L L+ ++ + KE + L + + Sbjct: 375 HGLERWTALVHPDDYEPVMARLKAHLNDEVGE-YRAEYRMRNKEGQWLWVLDIGKIMQRD 433 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + + + DISE K + ++ +++ AE+ + KS+FL +SHEIRTPL AIIG Sbjct: 434 ASGAPARVTGVLQDISERKAVEAQIQQSRQDAERATQAKSEFLDCMSHEIRTPLNAIIGM 493 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + + + P+ +Y IDR+ ++ +N +LD+SKIE+GK+++ L E Sbjct: 494 AHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRE 549 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ- 724 V + + LV+ A EK + ++ ++P R + D + Q+ N++ NAI FT +G Sbjct: 550 LVDDVLLLVRQRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLVDNAIKFTEAGHVC 609 Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 + + + V DTGVG+++ + + F Q S R G+GLGL ++K Sbjct: 610 IGVYLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISK 669 Query: 783 AMVDANMGKFYIFSTPAKGTLIEII-------FPLYD 812 +V G + S P +G + PL + Sbjct: 670 KIVQLMQGDIRVKSQPGQGATFKFSVQLSLPPLPLEE 706 >gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid [Clostridium ljungdahlii DSM 13528] Length = 949 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 10/356 (2%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +L + I ++ + N A + FG D+ + + +T + ++ E+ Sbjct: 197 LLNNSESQIWALSNVTSYAAVNEAHASFFGKKKSDLEYQDLYDIFDIDTANKLSASNWEL 256 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574 + E E +LL ++ +K + T DI+E + + +L A Sbjct: 257 FQKNESAKKEIEVRNFKGENRLLQIKSKPQKDKTGNIKYLICTAEDITEQRLAERELYKA 316 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 K+ AE + KS FLA +SHEIRTP+ I GF +++++ ++ + Sbjct: 317 KEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLSL----EQKDFIREAKSAS 372 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 ++L I+ND+LD SKIE+ K+ + +L + +A+SL+ A EK + + T + + Sbjct: 373 KVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPKAVEKGLELYTMISEGV 432 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTN 750 P ++ D ++QI N++SNA+ FT G + + NE + V+DTG+G+ Sbjct: 433 PEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEENETAVLNFEVKDTGIGIRK 492 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 ++ K F Q S + GTGLGL ++ +V G+ ++ S KG++ + Sbjct: 493 DHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIHVESIFGKGSIFKF 548 >gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1050 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 105/523 (20%), Positives = 191/523 (36%), Gaps = 48/523 (9%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-------D 359 + E D +ANP+ + Y + D Sbjct: 382 RRAQVQITDSEKRYKALFDANSDGILAADSVTRRFVFANPAVCRMFGYSEEEFRGLKVDD 441 Query: 360 IEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 I L + +A L + + + D + A R ++ N + Sbjct: 442 IHPQENLEEVLGNFNAQALGQTDVAEALPCLHRDGSVFTADIRSFLLKINGTSC------ 495 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 G+ + + + +L + ++DGI +R + Sbjct: 496 -------------AVGLFRDVTERSQILDALRQTQERLALAIAGSNDGIWDWDRVADQVY 542 Query: 477 TNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + ++ GY ++ + + + + + S D + K Sbjct: 543 FSPRWKEIIGYEDHELRNDLEEWRSRIHPEDRERVLAVNNQFFSSDASHFV-IEYRLRHK 601 Query: 535 EEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + L + + DI+E K + +L + A S KS FLA Sbjct: 602 DGTYRWIMGRGTCLRDDEGVPCRMAGSHADITERKAMELELVGVRDAALAASVAKSAFLA 661 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 +SHEIRTPL I+G +++ Y D SG + +++D+LDIS+I Sbjct: 662 NMSHEIRTPLNGIMGMLQLL----DSSSLTEEQKNYVRMADVSGRRLTALLSDILDISRI 717 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709 E+GK+ L L+E + I+L + A EK I + A ++P ++ D ++QI Sbjct: 718 EAGKLLLTERAFDLEEMRTSIITLFSIPAQEKGISLVVELAPDLPPRLIGDDLRLRQILF 777 Query: 710 NILSNAIHFTPSG---GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 N++ NA+ FT G QI + ++ N ++ V+D+G G+++ L +PF Q Sbjct: 778 NLVGNAVKFTNEGFVQTQISLLSSQADNGCRLLFSVQDSGEGISDTLLPAIFEPFVQGEG 837 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 S +G GLGL + ++ G I S+ GT I Sbjct: 838 SYVRYHQGAGLGLAIVGRLMRMMGGSLAIDSS-DSGTTICFSL 879 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 30/332 (9%), Positives = 83/332 (25%), Gaps = 26/332 (7%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-LWPI 152 + + + G + G+++ D+ +++ + T + Sbjct: 415 RFVFANPAVCRMFGYSEEEFRGLKVDDIHPQENLEEVLGNFNAQALGQTDVAEALPCLHR 474 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHLHEIK 211 +G+ I L I + G+ + AL + ++ + Sbjct: 475 DGSVFTADIRSFLLKINGTSCAV------GLFRDVTERSQILDALRQTQERLALAIAGSN 528 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTEKYPLLTSE 265 G ++ ++ + ++ + + +S+ Sbjct: 529 DGIWDWDRVADQVYFSPRWKEIIGYEDHELRNDLEEWRSRIHPEDRERVLAVNNQFFSSD 588 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S + + L+++ + + + Sbjct: 589 ASHFVIEYRLRHKDGTYRWIMGRGTCLRDDEGVPCRMAGSHADITERKAMELELVGVRDA 648 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + A +FL ++ + G+ LLD+ L++ M Sbjct: 649 ALAASV------------AKSAFLANMSHEIRTPLNGIMGMLQLLDSSSLTEEQKNYVRM 696 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 S R A + + I L +T Sbjct: 697 ADVSGRRLTALLSDILDISRIEAGKLLLTERA 728 >gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 627 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 167/399 (41%), Gaps = 36/399 (9%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 E +++ E E +L S+L SDG+ +R G I N Sbjct: 240 GNDELGQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMA 299 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++L K L+ + L + + L + EK + + Sbjct: 300 MNYLDISEGEVLGKSILDILDIRNQYTLRDLLEKQDEVVLDISGEKDLILNA------YF 353 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +I ++ F S +HD++E ++ + F++ VSHE+RTPLT Sbjct: 354 SVIQRESGFISGIVCVLHDVTEQQKI--------------DRERKQFVSNVSHELRTPLT 399 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++ + E + + G + + E+ + ++ ++NDLL +S+++SG + L E Sbjct: 400 SMRSYIEALND---GAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLE 456 Query: 661 PVSLDEAVSEAISLVQLYANEKRI----------LIRTSFANNIPRILADLRSVKQIALN 710 V+++ V+ + + + +I I+ +F + D Q+ N Sbjct: 457 LVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFTKRDLWVELDTDKFIQVVDN 516 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I++NAI ++P GG I ++ VIL + D G+G+ +L F ++ ++ Sbjct: 517 IMNNAIKYSPDGGVITCRL-LETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRA 575 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++K +++ + G+ ++ S KG+ I P Sbjct: 576 QGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614 >gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1407 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 117/597 (19%), Positives = 228/597 (38%), Gaps = 54/597 (9%) Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + L + +L ++ + K L + ++S + Sbjct: 321 QTISANYPGLFGEVKEALLSMQEVARALEQRRWAKDEITNLISAIQQSRSH--------- 371 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLL 370 S + + + TV +V + +L + + + IE A + Sbjct: 372 SEFGEALLSHLCPTVHAVQGCLYVQTEESLSPVSAYGARIDQINPSGLIEQCAQDQKMIA 431 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI---------QWNRENSLAMTFIPFEKA 421 + + + + + + I + SL ++ +P A Sbjct: 432 IEDPEARLHLSGLLSARTAHVVILPLVLQNRAIGIIELSLLSPPDAHCSLLLSELPQMLA 491 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--------------CSILEATSD-GIA 466 + ++ ++++ + +L IL A ++ I Sbjct: 492 PVLEVLRRNLRTQHLNMMLAAQTKELDAQRRELLNTHEATGKVNAMLQDILAAATEIAII 551 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + G+I N +K+ G+ ++++ + ++ S Sbjct: 552 GTDVNGLITLFNTGANKMLGWIADEVVGLQTPACFHREDELAAACRTADVSSSFGAIVAG 611 Query: 527 --------KITLGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + + + S Y + DIS ++ + L +A Sbjct: 612 AVMNGHDSREWTFVRHDGTEFIGLLLTSAVYSMDSVISGYLCVIQDISGRRETEQNLINA 671 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + +AE+ S KSDFLA +SHEIRTP+ IIG S + N P R +Y I +SG Sbjct: 672 RTLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLALNTDLTP----RQRDYLKKIQQSG 727 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L I+ND+LDISKIE+GK+++ L+ +++ ++L+ EK + + A+++ Sbjct: 728 QNLLRIINDILDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLELILDIASDV 787 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTN 750 P +L D + Q+ LN SNA+ FT G +I + S ++V+ VRDTG+G+++ Sbjct: 788 PVNLLGDSLRLGQVLLNYASNALKFTEQGEIVIAVRLRERSEDQVLLYFEVRDTGIGLSS 847 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ + PF Q S R GTGLGL + + + D G+ + S +G+ Sbjct: 848 EQISRLFTPFTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNSVEGQGSTFWFT 904 >gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus CD2] Length = 917 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 106/502 (21%), Positives = 204/502 (40%), Gaps = 21/502 (4%) Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + + V G + Y N + ++ D I A + + N Sbjct: 164 AHDVFENTVDGIVVTGPEGEILYLNKFAEQIIGWEQKDVIGKA--FEEIFHLFEGDPCNK 221 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + + + A+ + + + ++ ++ + + + Sbjct: 222 APNPVKKAIETRKVVGLAKNTLLLTKNKEYIYLSAGISTIQDRDEKVKAVVIVFRDISRL 281 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRK 495 R + +E + ++ T D I + N G I+ N A + G+ E++L Sbjct: 282 RRREINVEENERKYRALFNNTLDAIFVSLVMPDNELGKIIEVNDAACRWTGFSREELLNM 341 Query: 496 PFTVFLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 T ++ +++ + + ++K + I L Sbjct: 342 EITDLMKVLKVESSSYSNTGMVNYAMINAEAGVIKKNQGILDNNKVYFESSIHYFTLNNQ 401 Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611 HD++ ++ + ++ AKKIAE+ + KS FLA +SHEIRTPL IIG S+++ Sbjct: 402 KIALSINHDVTSFRVAQEQMLQAKKIAEEANKTKSIFLANMSHEIRTPLNGIIGMSDLML 461 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671 + P E I +L ++N++LD SKIE+ K+ + L E + E+ Sbjct: 462 RVKMTP---EEQRETTKTIISCSQNLLHLLNNILDFSKIEAEKVEISSNVFDLKEIIGES 518 Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST- 729 I++ ++ A EK + I F + + + D ++QI N+++NAI FT G +I + Sbjct: 519 INMYKIRAKEKSLDISAGFQDGLENLWIGDKVKIQQILNNLINNAIKFTIEG-RINVLVN 577 Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + E+ V DTG+G+ + +L K F Q+ S + GTGLGL ++K +V+ Sbjct: 578 KLNDDGSCCELQFTVSDTGIGIEDKDLNKLFVAFSQVDGSYTRQFGGTGLGLSISKKLVE 637 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 G+ ++ ST G+ Sbjct: 638 LMGGRIWVESTMGVGSRFNFTL 659 Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 6/134 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144 G + +++ + IG +IG ++ + DP N + ++ + Sbjct: 178 TGPEGEILYLNKFAEQIIGWEQKDVIGKAFEEIFHLFEGDPCNKAPNPVKKAIETRKVVG 237 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + Y+ + I R+ + + + ++K+ Sbjct: 238 LAKNTLLLTKNKEYIYLSAGISTIQDRDEKVKAV--VIVFRDISRLRRREINVEENERKY 295 Query: 205 SHLHEIKKGHSSVE 218 L V Sbjct: 296 RALFNNTLDAIFVS 309 >gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 1066 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 107/642 (16%), Positives = 224/642 (34%), Gaps = 33/642 (5%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 R D F ++++ + + + L A + + Sbjct: 287 EMRLARTDGHFRLTVADDGPGIPDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFAL 346 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L L T+ T + + + Sbjct: 347 LHGGDVTLTTNPAGGAVFTVTLPVAAPAGVTVHDAPDDGRPEPSPPIPAAPADAITASAR 406 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 +E + V + Y L + + + + A ++ Sbjct: 407 PSEERAGMPLVLVIEDNADMRDYLLDILGGRYRTLAAVNGREGLAA-AKARHPDLIVSDV 465 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + + + V R D + T + + + + P + + Sbjct: 466 MMPVLSGTEMVRELRRDPALDKVPVVMLTAKADDTLRRRLIAERVQDYLVKPFDAEELLA 525 Query: 434 E--PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 DT + + + + + E + GIA++ +G L N + + GYP E Sbjct: 526 RIGRLLADTGRHAQDLGASERRFQATFELAAVGIALVGPDGRWLRVNNKLCDILGYPCEA 585 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 +L F + + ++L+ T + K+ + + + + + + Sbjct: 586 LLGMTFQQITHPDDLDADMGKVRQVLA-GNLNTYNREKRYIRKDGSFVWVNLTVALVRDA 644 Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS--------------HKSDFLARVS 593 + + + DI K+ + L ++ + + KS FLA +S Sbjct: 645 AGQPDYFISVIEDIDRRKRAEEALLRSRDELARAAEQAKQLASRAEAASLAKSSFLANMS 704 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HEIRTPL ++G +++K + ++YA+ RSG + ++ D+LD+S+IE+ Sbjct: 705 HEIRTPLNGLMGMMQLLKTTAL----DDEQLQYADMAIRSGGRLTRLLGDILDLSRIEAA 760 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 ++ LH P SL + + A EK + + ++PR ++ D ++QI N+ Sbjct: 761 RLTLHVAPFSLADVFAAITETFAPLALEKGLPLVCLANPDLPRNVIGDETRLRQILFNLA 820 Query: 713 SNAIHFTPSGGQIII---STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 NA+ FT +G ++ + S + V DTGVG+ + +L+ + F Q+ ++ Sbjct: 821 GNAMKFTVAG-EVRVEGWSLLPLPDGRARLLFAVSDTGVGIPDDKLDAVGEAFTQVESTY 879 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 +G GLGL + + + G I S GT + ++ P Sbjct: 880 TRDQQGAGLGLAICRELTRLMGGSLTIESELGVGTTVWLMLP 921 Score = 241 bits (616), Expect = 3e-61, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 5/252 (1%) Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 + +++ + + + K++F A VSHE+RTPLT I+G + + P Sbjct: 128 RLRGANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILGS---LAKRLGAAETPPE 184 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 ++R+ L+L V DLLD++++++G+M L + + S + A E+ Sbjct: 185 ARRDYRVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARER 244 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 I + + D+ V++I N+LSNA FTP GG++ + T L V Sbjct: 245 GISLTVDAPRAL-TAEVDVEKVRRILQNLLSNAFKFTPDGGRVEMRLARTD-GHFRLTVA 302 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G G+ + + + + F Q+ + + GTGLGL +AK + G + + PA G Sbjct: 303 DDGPGIPDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGA 362 Query: 803 LIEIIFPLYDTS 814 + + P+ + Sbjct: 363 VFTVTLPVAAPA 374 Score = 88.5 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 70/227 (30%), Gaps = 14/227 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGK 146 + G ++ +L +G ++GM ++ +D + + +L NT+ + Sbjct: 562 VGPDGRWLRVNNKLCDILGYPCEALLGMTFQQITHPDDLDADMGKVRQVLAGNLNTYNRE 621 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ +V ++L + + F ++ R + + Sbjct: 622 KRYIRKDGS--FVWVNLTVALVRDAAGQPDYF--ISVIEDIDRRKRAEEALLRSRDELAR 677 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEKYP 260 E K +S + S ++ ++ L + A D+ L+ Sbjct: 678 AAEQAKQLASRAEAASLAKSSFLANMSHEIRTPLNGLMGMMQLLKTTALDDEQLQYADMA 737 Query: 261 LLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + + L + D I + T +L + E + Sbjct: 738 IRSGGRLTRLLGDILDLSRIEAARLTLHVAPFSLADVFAAITETFAP 784 >gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 705 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 102/498 (20%), Positives = 211/498 (42%), Gaps = 25/498 (5%) Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRT 392 + G + +PS +T Y D + + ++ ++ I + Sbjct: 67 WRGLDGKYIWVSPSCERITGYTPNDFLSGRISIKKIIHYKDAILWDSHINEMNCSNFQSP 126 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 I R++ ++ + ++ N + + G + + + + ++ Sbjct: 127 HIEIEFRINNLK---GEIVWISHTCKAIYNSAGICLGRRGCNRDITEKKFVEISLKKNQA 183 Query: 453 QLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 L +IL ++ I ++ ++ +I N ++FGY ++++ + Sbjct: 184 ILEKHLLWKENILNTSAVAILVVVKDRVIADANIGFEEMFGYSKKELIGHSVRMLHVDGE 243 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDIS 562 + + ++ K+ ++ + I S +I+ Sbjct: 244 LFEQYGKINW-SQTSTTKVVKCEWKLKKKDGSIIICEVSGSAINPHDLSEGVIWIATNIT 302 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 E K+ +++L +KKIA+ + KS+FLA +SHEIRTPL I+G +++++ + N + Sbjct: 303 EKKKFESELISSKKIADAANKAKSEFLANMSHEIRTPLNGILGMLQLLESTQ----TNHQ 358 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 EY + SG + +++ +LD+S+IE G L ++ + + ++ + K Sbjct: 359 QSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLESHGFNIKHLIDDIVNTFITELSSK 418 Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVI 738 ++LI T+ A +P + D ++QI NI+ N+I FTP G + IS ++ V Sbjct: 419 KLLITTTIAKIMPDVIYGDSGRLRQIIFNIVGNSIKFTPFGS-VAISIDSLTSGNTIHVF 477 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + + DTG+G+ +L+ PF Q+ S + G GLGL + K + A G + S Sbjct: 478 IEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGLGLSIVKKQLLAMEGSITVESNE 537 Query: 799 AKGTLIEIIFPLYDTSHP 816 + GT I P + T+ P Sbjct: 538 SGGTKTCIAIP-FKTNEP 554 >gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 775 Score = 330 bits (847), Expect = 5e-88, Method: Composition-based stats. Identities = 130/608 (21%), Positives = 237/608 (38%), Gaps = 30/608 (4%) Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279 + + Q+ R+ + + + + + LLT +E LP + + Sbjct: 39 AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 98 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337 +S E L L G Sbjct: 99 ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 158 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L ++ L STLL A + +ML + Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 AR+H +Q N + + + + + +R + +L Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272 Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ + F+VF Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 + + + + K+ ++I S +S DIS+ + + Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688 R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A + I ++ Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 505 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V DTG G+ Sbjct: 506 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGI 563 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + KPF ++ EGTGLGL L+K+M++ G + +T +G + Sbjct: 564 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLAL 621 Query: 809 PLYDTSHP 816 P P Sbjct: 622 PFVAVHAP 629 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 69/265 (26%), Gaps = 20/265 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + + L H Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELKELPHLPDE--LGV 513 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339 + + L ++ Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPD 538 >gi|126724717|ref|ZP_01740560.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] gi|126705881|gb|EBA04971.1| sensory box sensor histidine kinase/response regulator [Rhodobacterales bacterium HTCC2150] Length = 784 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 110/442 (24%), Positives = 198/442 (44%), Gaps = 21/442 (4%) Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 A+ ++L ++ + L + FI F Q ++ I E Sbjct: 184 AVSMLVLDAANGGWLDRRFWFDAFSSTLLIYLIILFIKFTHGYQQRRQRFEHAIILERRQ 243 Query: 440 TRINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 T I + + ++ E+ +D + I N + I N +K GY + + + Sbjct: 244 TEIANETLRKKQRHFRWLAAVAESANDSVIISNTDNRIEWVNDTFTKTTGYSFTEAIGRI 303 Query: 497 FTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 L + + S + + I + + + + TK + + + I + + Sbjct: 304 PGELLNGPETSKSANSKIIDAI---NKLEPVRTEIVNYTKSGQKIWVETSISPIFDDTGE 360 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DIS KQ + L+ A+ AE+ ++ KS FLA +SHEIRTP+ +IG ++++ Sbjct: 361 LTMFVGIERDISLIKQREVDLALARSEAEQAAAAKSAFLATISHEIRTPMNGVIGMADLL 420 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + + +E I SG +L I+ND+LD SK+ SGK+ L + +S+ + +S Sbjct: 421 VKSKL----DEEQLELTKTIIESGESLLHIINDILDFSKLGSGKLELSPQAISVPDVISR 476 Query: 671 AISLVQLYANEKRILIR-TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729 AI ++ A K I + TS ++I +L D ++QI LN++ NAI FT +GG + I Sbjct: 477 AIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQIVLNLVGNAIKFTDTGG-VTIDV 535 Query: 730 THTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 N EV + + DTG+G+ L + + F Q + GTGLGL ++K + Sbjct: 536 LMQEVSNNVEVTINISDTGIGIPADALHRIFENFTQADGDTTRKYGGTGLGLSISKRLAK 595 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 G + ST +G+ ++ Sbjct: 596 QMGGDIVVTSTVGEGSCFQVKL 617 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 11/245 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTL 149 ++ +++ KT G + IG ++ + + I D + + + Sbjct: 278 DNRIEWVNDTFTKTTGYSFTEAIGRIPGELLNGPETSKSANSKIIDAINKLEPVRTEIVN 337 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + G + ++ + PI+ E + F GI + + Sbjct: 338 YTKSG--QKIWVETSISPIFDDTGELTMF--VGIERDISLIKQREVDLALARSEAEQAAA 393 Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K + + + ++ + LT+ + L +L Sbjct: 394 AKSAFLATISHEIRTPMNGVIGMADLLVKSKLDEEQLELTKTIIESGESLLHIINDILDF 453 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + E + TL+ ++ LS + S + + Sbjct: 454 SKLGSGKLELSPQAISVPDVISRAIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQ 513 Query: 325 TVDKC 329 V Sbjct: 514 IVLNL 518 Score = 45.0 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 37/159 (23%), Gaps = 7/159 (4%) Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348 + E + + + + + N +F Sbjct: 229 RRQRFEHAIILERRQTEIANETLRKKQRHFRWLAAVAESANDSVIISNTDNRIEWVNDTF 288 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 T Y + I G LL+ P+ S + K + + + + Sbjct: 289 TKTTGYSFTEAIGRIPG--ELLNGPETSKSANSKIIDAINKLE---PVRTEIVNYTKSGQ 343 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + E GIE + + + + Sbjct: 344 KI-WVETSISPIFDDTGELTMFVGIERDISLIKQREVDL 381 >gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM 14365] Length = 928 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 105/482 (21%), Positives = 197/482 (40%), Gaps = 18/482 (3%) Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 Y+ + + + A + C Sbjct: 50 YAFDRQQVWDARSREIFGIAEDAPDPDFRNWLRSIHPDDRGRVVAELDAARRAEEPHCRW 109 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + + E + +G+ + D + +L Sbjct: 110 ----DYRVVRPGGEVRHVRAFGTLGRTHGGEFLYVSGMHFDVTDEVEALALRDDLDRRLA 165 Query: 456 SILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNH 511 +LEA + +++ I+ + ++ + GY E ++ P L + + + Sbjct: 166 FLLEANPAILYVLDVSAATRIVYLSPSIRAVLGYDPEVVIATPGWWPDTLHPDDRARAFY 225 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569 L + D R T+ + + L L+ + + + + + DI++ Q ++ Sbjct: 226 ALEHTVRQDGRATV--VYRMRKADGSYLWLQDQLSQPHPERPHVIIGCLSDIADRMQIED 283 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L A++ A+ S KS FLA +SHEIRTPL ++G ++++ + P E + Sbjct: 284 ELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDTGLSP----EQRELLDA 339 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + S N + ++ D+LDISKIE+GK+ + L E V EA + + A E+ + + Sbjct: 340 LQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQEQGLELIVD 399 Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 +P R+L D +QI LN+LSNA+ FTP+G ++++ ++E + L VRDTGVG+ Sbjct: 400 AEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAG-EVVVRVRQRADEHIELSVRDTGVGV 458 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E + F Q S R GTGLGL + + + + GK + G++ + Sbjct: 459 PEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQGGSVFSVSL 518 Query: 809 PL 810 PL Sbjct: 519 PL 520 >gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So ce 56'] Length = 947 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 219/605 (36%), Gaps = 45/605 (7%) Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE---ESSLPEQEDFHTINLNQYTKKQ 287 P H +++ ++S A + V T P + + T Sbjct: 204 PLHAQLEAVLASGEPSVASEIPVRITRWTGETVERLYNVLCKPVHDVGGAVEGVMVTAFD 263 Query: 288 YFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLF 342 + K L S E + + P+ F Sbjct: 264 VTEQIGARRKAERLALELQQSVAQRLRAEQALRVNEERFRKALRGSPVMVFTQDRDLRYT 323 Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402 + + SF + + G L D A + + + D R Sbjct: 324 WMHNSF----GKSEREVLGKTDG-------EVLEDPEAARSLDRTKRDVLASGVGQRREI 372 Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462 + + A+ E + + + + ++ + + ++ EA+ Sbjct: 373 AVRAGGRTQHIDVSIEPLADDTGEIIGITCTATDITERKSIEQALRASEARFRTVQEASP 432 Query: 463 DGIAII----NREGII-----LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 DG ++ + G I + N A + G +D+ K V + + + Sbjct: 433 DGFMMLRSVRDASGAISDFEWVYVNPATGPIVGGRGKDLEGKRLLVEVPGSALASAFDAY 492 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-- 571 ++ +E ++ + + L+ HDI+E K+ + Sbjct: 493 ARVVETGEPARIELSCAHEGAPRTFRAIAVALG-----DGVGLSFHDITEQKRADAERAQ 547 Query: 572 -----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 A++ AE+ + K +FLA VSHE+RTPL +I+G++ ++ R G + Sbjct: 548 LLDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWARIL---RTGEVDAESLERG 604 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+R+ ++ D+LD S I +GK+ L +PV + + ++ A+ LV+ A K + + Sbjct: 605 LATIERNAKAQSQLIEDVLDASTILAGKLQLRTDPVDVRQVLATALDLVRPAALAKGVAV 664 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 TS A+++ L D ++Q+ N+L+NA+ FTPSGGQ+ + + + V D G Sbjct: 665 DTSVADDVGIFLGDAERLQQVVWNLLANAVKFTPSGGQVR-ALARRVEATLEVEVEDNGE 723 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805 G+ L + F Q G GLGL + + + +A G + S KG Sbjct: 724 GIPKSFLPFLFERFRQADGGMTRAHGGLGLGLAIVRHLAEAQGGSVHAESDGEGKGARFR 783 Query: 806 IIFPL 810 + P+ Sbjct: 784 VRLPI 788 Score = 82.0 bits (201), Expect = 4e-13, Method: Composition-based stats. Identities = 40/422 (9%), Positives = 104/422 (24%), Gaps = 30/422 (7%) Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + + I S +++ + + S + + Sbjct: 16 IIERFVGELRKRSAAVRDMPKPLIINSLPSFLDEVAASLEQRASTAGSKEAAREHGEMRW 75 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + V+ E L S + E + + ++ + + L Sbjct: 76 EHGLDLGVMVREYGVLRQSILREMEEAGITPDLREIEALSERVDAGIAQ-AVSEHTRLQL 134 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIA 363 + + + + + P P L + ANP F + + + Sbjct: 135 EAIETERRRTEIERGRSGSLLSQAPAPICFLKGAALVFELANPLFCRMVGRDDLLGKPLV 194 Query: 364 GGLSTLLDAPKLSDNNA-----------IKPVMLYRSDRTCIA--ASARLHTIQWNRENS 410 + L P + A PV + R + + + Sbjct: 195 DAVPELRGQPLHAQLEAVLASGEPSVASEIPVRITRWTGETVERLYNVLCKPVHDVGGAV 254 Query: 411 LAMTFIPFEKANQFPEN----MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + F+ Q ++ ++ + + + L + + Sbjct: 255 EGVMVTAFDVTEQIGARRKAERLALELQQSVAQRLRAEQALRVNEERFRKALRGSPVMVF 314 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +R+ + + FG ++L K L P + + Sbjct: 315 TQDRDLRYTWMHNS----FGKSEREVLGKTDGEVL--EDPEAARSLDRTKRDVLASGVGQ 368 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582 + + + + + I+ L + + T DI+E K + L ++ Sbjct: 369 RREIAVRAGGRTQHIDVSIEPLADDTGEIIGITCTATDITERKSIEQALRASEARFRTVQ 428 Query: 583 SH 584 Sbjct: 429 EA 430 Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 43/414 (10%), Positives = 97/414 (23%), Gaps = 46/414 (11%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQ 140 + A + + + +G ++G L D L P + + +L Sbjct: 159 PAPICFLKGAALVFELANPLFCRMVG--RDDLLGKPLVDAVPELRGQPLHAQLEAVLASG 216 Query: 141 NTWYGKTTLWPI---EGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRA 195 I G + ++ P++ G F + Sbjct: 217 EPSVASEIPVRITRWTGETVERLYNVLCKPVHDVGGAVEGVMVTAFDVTEQIGARRKAER 276 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKE---------------KYDIFSQQSPPPHLRMKNKV 240 L L + + ++ E+ D+ + + +V Sbjct: 277 LALELQQSVAQRLRAEQALRVNEERFRKALRGSPVMVFTQDRDLRYTWMHNSFGKSEREV 336 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298 T+ +D +S +E L +++ E Sbjct: 337 LGKTDGEVLEDPEAARSLDRTKRDVLASGVGQRREIAVRAGGRTQHIDVSIEPLADDTGE 396 Query: 299 SF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYA 344 S+ E + P F + Y Sbjct: 397 IIGITCTATDITERKSIEQALRASEARFRTVQEASPDGFMMLRSVRDASGAISDFEWVYV 456 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLH 401 NP+ + + D G L++ P + +A A Sbjct: 457 NPATGPIVGGRGKDL----EGKRLLVEVPGSALASAFDAYARVVETGEPARIELSCAHEG 512 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + R ++A+ + E + + +D R+ ++ +L Sbjct: 513 APRTFRAIAVALGDGVGLSFHDITEQKRADAERAQLLDQEQRARQHAEQLNRLK 566 >gi|239907263|ref|YP_002954004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239797129|dbj|BAH76118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 869 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 122/703 (17%), Positives = 222/703 (31%), Gaps = 41/703 (5%) Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 +W +P L R +G R V V V+ + Sbjct: 42 SWRENFEAYPPVLEELQHARADTVKAYLGVERYMAGERH---VRVPDVEAFFDQALESCR 98 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + + + E+ + ++ A D+ Sbjct: 99 DIARAMGKA-EAVGEGQAEREPFIQNLDRYAASIAAFRELAMQGMAAVSDNRAWLGVERQ 157 Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS----------KESFEYLSHRNHPSL 311 T+ L N + ++ Sbjct: 158 AAFAALEKQADALSETVRRCMDAAASRQTRLNNILFFAWISFLAFLAASLAIAGSRRRKA 217 Query: 312 SAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 E+ D+ V G + N + Y I L Sbjct: 218 EQAMLASEDKYRSLFDQARDAILVVDDDTGRILDCNRALAAEWGYPPETLIGRTTEAVGL 277 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + P + + + E + E Sbjct: 278 -----TDPADDDAPASVLGQNGSLTTIRETRMRTAAGDER----LVSVKSGRFRLGEATV 328 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREG--IILSTNRAVSKL 484 + I + + R + + L S+ + DG+ ++ G L ++ + ++ Sbjct: 329 RLDICRDITELRREEEALRGREAMLRSLGDNLPDGVIYTLEVDSAGNHRFLYVSQGLERI 388 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 G PV L VF EI S+ + + + ++ + Sbjct: 389 LGLPVALALADAELVFASIVEDDRERLRQAEIQSMATGEPFDVQARILAPDGGVIWGQFR 448 Query: 545 IKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 P S D+S K+ + L A +AE S KS+FLA +SHEIRTPL Sbjct: 449 AAPRPGSGRVVLFDGFYFDVSALKRIEGDLRRAMVVAETASQSKSEFLANISHEIRTPLN 508 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G ++++ G Y + G + ++ D+LD S +E+G M + P Sbjct: 509 GVLGMLQLLETAPLGR----EEAGYVTTALKCGRGLTRVLGDILDFSLLEAGAMVIKSTP 564 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 V + + ++ + + + + I A ++P R+L D ++QI N++ NAI FT Sbjct: 565 VDVRDVTADVLGALSIECRARGIDAGLVVAPDVPARVLTDGARLRQILFNLVGNAIKFTQ 624 Query: 721 SGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 +G I +++ ++ V DTG+GM +L+ +PF Q S R GTGLG Sbjct: 625 AGSVRLDIALASQRGQAAVLLFTVADTGIGMPEEKLDDVFEPFTQADGSLTRRFGGTGLG 684 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 L + K ++ G + S GT I+ P P D + Sbjct: 685 LGIVKRLLTLLGGFLAVESRVGVGTRIDFSLPCKLEQAPKDAV 727 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 42/352 (11%), Positives = 87/352 (24%), Gaps = 21/352 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKT 147 D G + + + L G +IG V D ++ +L + + +T Sbjct: 244 DDTGRILDCNRALAAEWGYPPETLIGRTTEAVGLTDPAD-DDAPASVLGQNGSLTTIRET 302 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + G V + R R I + + L Sbjct: 303 RMRTAAGDERLVSVK------SGRFRLGEATVRLDICRDITELRREEEALRGREAMLRSL 356 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL---KTEKYPLLTS 264 + E D + ++ L A D L + Sbjct: 357 GDNLPDGVIYTLE-VDSAGNHRFLYVSQGLERILGLPVALALADAELVFASIVEDDRERL 415 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--EGENLT 322 ++ + ++ G + + + S R YFD + + Sbjct: 416 RQAEIQSMATGEPFDVQARILAPDGGVIWGQFRAAPRPGSGRVVLFDGFYFDVSALKRIE 475 Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + + + F AN S + T + G+ LL+ L A Sbjct: 476 GDLRRAMVVAETASQSKSEFLANISHEIRTP------LNGVLGMLQLLETAPLGREEAGY 529 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + R + ++ + P + + + + IE Sbjct: 530 VTTALKCGRGLTRVLGDILDFSLLEAGAMVIKSTPVDVRDVTADVLGALSIE 581 >gi|254416706|ref|ZP_05030456.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] gi|196176446|gb|EDX71460.1| PAS fold family [Microcoleus chthonoplastes PCC 7420] Length = 785 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 82/512 (16%), Positives = 190/512 (37%), Gaps = 21/512 (4%) Query: 306 RNHPSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 E D+ + G + AN + L + I Sbjct: 286 AQRQQFQQALLASEQKFHAIFDQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIGKPF 345 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + + + + I + + + F + Sbjct: 346 WQARWWTISAQTQAQLKDAIA-RSAQGEFIRYEVDVQ---GAGDRIATIDFSLKSVTDSS 401 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + + + + ++ + + + G A++ +G + NRA+ L Sbjct: 402 GQVVLLIPEGRDITEVKQIEEQLRESEERFRRAFDDAATGEALVTPDGQFIRVNRALCDL 461 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY ++L F + Y+ ++L+ +++ E K+ ++ + + Sbjct: 462 LGYQESELLATTFQDITYPDDLETDLGYVRQLLTDEIQA-YEMEKRYFHKQGHVIWILLS 520 Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + + S + + DI+ KQ + ++ + E+ + DF VSH++ +PL Sbjct: 521 VSLVRNSQRQPLYFVGQIQDITHTKQTQIQMKNLVTELERSNRELEDFAYIVSHDLLSPL 580 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 + S+ + + + + + + EY + + + +NDLL +S++ + F Sbjct: 581 HKMQMLSD-LLTEDYSQVLDEQGQEYLRRMRQVKERMQTFINDLLMLSRVTTQAQP--FI 637 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PV+L+ V E +S + + E + +P + AD ++Q+ N+LSNA+ F Sbjct: 638 PVNLNTVVQEVLSDLDVQLQETGGTVEVE---KLPTVKADPLQMRQLMQNLLSNALKFHQ 694 Query: 721 SGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 S ++ + ++ + ++D G+G + E+ + F ++ + + EGTGLG Sbjct: 695 SKIAPVVKVYSQPSQLPDQCEIVIKDQGIGFKSEYEEQIFEAFQRLHS--RRHYEGTGLG 752 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L + + + + G S P +G I P Sbjct: 753 LTICRKIATRHGGTITASSVPGEGARFTITLP 784 Score = 78.1 bits (191), Expect = 6e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 5/150 (3%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 D + ++ + + +I + T I ++ +G +L N+ G + ++ KP Sbjct: 285 DAQRQQFQQALLASEQKFHAIFDQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIGKP 344 Query: 497 FTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 F + L I + + +++ ++ +K + SS Sbjct: 345 FWQARWWTISAQTQAQLKDAIARSAQGEFIRYEVDVQGAGDRIATIDFSLKSVTDSSGQV 404 Query: 556 LTM----HDISEWKQEKNKLSHAKKIAEKE 581 + + DI+E KQ + +L +++ + Sbjct: 405 VLLIPEGRDITEVKQIEEQLRESEERFRRA 434 Score = 60.0 bits (144), Expect = 2e-06, Method: Composition-based stats. Identities = 33/397 (8%), Positives = 102/397 (25%), Gaps = 29/397 (7%) Query: 80 PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLK 138 +T +F ++ G + E ++ G ++IG + + D + Sbjct: 307 DQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIGKPFWQARWWTISAQTQAQLKDAIA 366 Query: 139 RQNTWYGKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 R ++G + ID + + + + G Sbjct: 367 RSAQGEFIRYEVDVQGAGDRIATIDFSLKSVTDSSGQVVLLIPEG--RDITEVKQIEEQL 424 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLK 255 + +++F + ++ ++++ + T D L+ Sbjct: 425 RESEERFRRAFDDAATGEALVTPDGQFIRVNRALCDLLGYQESELLATTFQDITYPDDLE 484 Query: 256 TEK---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 T+ LLT E + ++ + + ++N+ ++ ++ + + Sbjct: 485 TDLGYVRQLLTDEIQAYEMEKRYFHKQGHVIWILLSVSLVRNSQRQPLYFVGQIQDITHT 544 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 +++ F + + + + LS LL Sbjct: 545 KQTQIQMKNLVTELERSNREL------------EDFAYIVSHDLLSPLHKMQMLSDLLTE 592 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASAR------LHTIQWNRENSLAMTFIPFEKANQFPE 426 + L R + L + + + + + Sbjct: 593 DYSQVLDEQGQEYLRRMRQVKERMQTFINDLLMLSRVTTQAQPFIPVNLNTVVQEVLSDL 652 Query: 427 NMPQNGIEPEDVDTRINKRKME--IEVMQLCSILEAT 461 ++ ++ K + + ++L Sbjct: 653 DVQLQETGGTVEVEKLPTVKADPLQMRQLMQNLLSNA 689 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 20/327 (6%), Positives = 79/327 (24%), Gaps = 9/327 (2%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL-KRQNTWYGKTT 148 G ++ L +G +++ D++ ++ + ++ LL + + Sbjct: 447 PDGQFIRVNRALCDLLGYQESELLATTFQDITYPDDLETDLGYVRQLLTDEIQAYEMEKR 506 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G + I L+ + + R+ F G + + K L + + Sbjct: 507 YFHKQGH--VIWILLSVSLVRNSQRQPLYF--VGQIQDITHTKQTQIQMKNLVTELERSN 562 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + + S + + + + + + + Sbjct: 563 RELEDFAYIVSHDLLSPLHKMQMLSDLLTEDYSQVLDEQGQEYLRRMRQVKERMQTFIND 622 Query: 269 LPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 L T + ++ + + + Sbjct: 623 LLMLSRVTTQAQPFIPVNLNTVVQEVLSDLDVQLQETGGTVEVEKLPTVKADPLQMRQLM 682 Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + + + ++ + + G+ + + + Sbjct: 683 QNLLSNALKFHQSKIAPVVKVYSQPSQLPDQCEIVIKDQGIGFKSEYEEQIFEAFQRLHS 742 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLA 412 + T + + + A Sbjct: 743 RRHYEGTGLGLTICRKIATRHGGTITA 769 >gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str. JGS1495] gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str. JGS1495] Length = 571 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 170/375 (45%), Gaps = 39/375 (10%) Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++EI + + L +IL++ G+ +R+ +L N K+FG E I K Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 ++ + E + + K+L +R I P Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ K+ + + +S F+A +SHE++TPLT+I GF+E ++ Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++ + ID + + ++ D+L + +IE + + E ++DE + + L+ Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + I +N ++ D KQ+ LN++SN++ +T GG++ + ++ + Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +IL + D G+G++ +L + + F ++ ++ GTGLGL + K +V G + Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGDINVT 554 Query: 796 STPAKGTLIEIIFPL 810 S GT I I P+ Sbjct: 555 SELGVGTKIVITIPI 569 >gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis DSM 1100] Length = 857 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 111/576 (19%), Positives = 216/576 (37%), Gaps = 77/576 (13%) Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYK--- 355 E + + + P + + + NP + L + Sbjct: 11 ENPGSNQWAITRKTMEAQALMVQNMLMTLPAFVCILRGADYVFDFVNPHYQQLFGKRELL 70 Query: 356 ------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-----DRTCIAASARLHTIQ 404 ++ ++ G L + + + + + + + ++ Sbjct: 71 GKPLLVALPELAGQGIEQILEEVYRTGEPYIGVDLPFLLARDENMEPELRYFNFCYQPMR 130 Query: 405 WNRENSLAMTFIPFEKANQFP--------ENMPQNGIEPEDVDT-----------RINKR 445 A+ +E Q E +E + R + Sbjct: 131 DEHNQIFAVLDYGYEVTEQVNAKTSNQKNEQQNALELEEKVQQRTFDLSAANGVLRKKNQ 190 Query: 446 KMEIEVMQL-----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++E +L S++EA+ D + I+ +G I N A++ + G + ++ F+++ Sbjct: 191 EIEETRGKLLSEYARSLIEASLDPLITISTKGKITDHNEALANITGKTRQQLIGSDFSLY 250 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558 + + E+ E + + K + + Sbjct: 251 FTEPEKAS--EVYEEVFEKGF--VTNYPLTIIDGELTNVLFNGSVYKDEKGNVLGAVVVA 306 Query: 559 HDISEWKQEKNKLSHAK---------------------KIAEKESSHKSDFLARVSHEIR 597 DI+ K+ +++L AK +IA K FL+ +SHEIR Sbjct: 307 RDITAQKRIESELIEAKVFAELAKGIAETAQSSAESATQIAVDAVKAKQQFLSNMSHEIR 366 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TP+ AIIGF++V+ + EY I SG+ ++ ++ND+LD++K+++GKM+ Sbjct: 367 TPMNAIIGFTKVVLKTELSA----KQKEYLTAIKMSGDALIVLINDILDLAKVDAGKMDF 422 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716 P L +++ + L + EK + + + IP +L D + QI LN++SNA+ Sbjct: 423 EETPFRLAFSITAMLHLFETKIQEKNLALVKVYDEEIPEVLVGDPVRLHQIILNLVSNAV 482 Query: 717 HFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 FT G QI +S H ++V + V DTG+G+T ++ + F Q + Sbjct: 483 KFTNKG-QITVSVRMLHADADKVTIEFAVADTGIGITKDKIPTIFENFQQASSGTSRLYG 541 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL +AK +V+ G + S +G+ I Sbjct: 542 GTGLGLAIAKQLVEKQGGTIRVESVVEQGSTFSFIL 577 >gi|289432805|ref|YP_003462678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946525|gb|ADC74222.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1262 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 109/750 (14%), Positives = 242/750 (32%), Gaps = 55/750 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW- 143 W D L S+ + G A +++ + + P + + +L+K+ + Sbjct: 406 WEFDLANGLVHPSDGAREIYGLKA-EILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYD 464 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 P +G LY+ ++ + R FG + L + + + Sbjct: 465 IEFKIKRPTDGAILYI----HSIAEFDSKRNVV----FGTIQDITKRKQAEELLRESEAR 516 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAH---KDDVLKTEK 258 F + +++ + ++ ++L Sbjct: 517 FRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTNLKVSDITNSDDFAKDIIHL 576 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L E S + + + + + +++ + YL+ + ++ Sbjct: 577 NRLKNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLLYYLAMIVDITTRKAAEDA 636 Query: 319 ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + G L AN + + Y + + K+ Sbjct: 637 LQKYKLIAEDSRDIILFMNKETGQLLEANSAAVKAYGYSREQLL-----------SMKIQ 685 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + A + +L L ++ + I + Sbjct: 686 NLRAPQARVLTARQLNQAHIRGMLFETFHQSKDGRVFPVEVSSRGADIEGTTTLINIIRD 745 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVED 491 + + + + + + + +D I + G + N A + GY ++ Sbjct: 746 TTERKQAENALNESLQNYQVLFNSVTDAILVHQPAADYSAGKFIEVNDAALAMLGYSRKE 805 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549 +L+ + + ++ + I ++ + TK K + + + + K Sbjct: 806 LLQITPMDLMSKGKYP-VSAFADNIRYIEKNTEVVSEFAMETKSGKTIPVELHSRMFKFG 864 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607 DISE K+ + + + +E S + A ++HEI PLT +IGF+ Sbjct: 865 GKRTVITLARDISERKKLEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFA 924 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + P +E I+ V++IV +L ++ + V++ E Sbjct: 925 SILMEREDLPAD---VMEELQIINSGSQRVVEIVKRMLTFAR----QAKPVRSSVNITEL 977 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQ 724 + + L I + + ++P + D ++Q+ LN++ NA + G Sbjct: 978 IDSTLDLRSYVLKTANIEVVRHYEPDLPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGI 1037 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + I E V + RD G+GM+ L K +PF + GEGTGLGL L+ + Sbjct: 1038 LTIRVKKE-GEWVRMSFRDNGLGMSAETLGKLFQPFFTTKDP----GEGTGLGLSLSHGI 1092 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + G S +G I P+ + Sbjct: 1093 ILEHEGTIRGESILGEGAEFTIELPIKPSD 1122 Score = 131 bits (329), Expect = 6e-28, Method: Composition-based stats. Identities = 48/507 (9%), Positives = 136/507 (26%), Gaps = 31/507 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G E+++ +G ++IG + +D + K T + Sbjct: 154 LDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTADTEFY 213 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G+ V + + F + + + + +K+ L Sbjct: 214 MNRKDGS--VVLMAFSGKIACDAKGNFK--QTHCTLQDITQRHLADEAIRESQRKYQALF 269 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---------SLTEYYAHKDDVLKTEKY 259 E + V ++ + + + + S + H L ++ Sbjct: 270 ESIGETAFVCYINKREWADEFVELNAVACDMLGYTHEELLKVSARNLFFHPSSGLVLKEI 329 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + + + + F LQ ++ ++ Sbjct: 330 TDELYAQKMVTRECNLPHKDGHNISVEMTFHIFDLQGRPAVLTLAHDITIRKKIARELEQ 389 Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + ++ + N L + + + ++ + + Sbjct: 390 SHRRLVKAEKVAGFGYWEFDLANGLVHPSDGAREIYG------LKAEILTIPFVQQIPVP 443 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ L + I + L + I + + G + Sbjct: 444 EDRPAMDKALNNLIKQNIPYDIEFKIKRPTDGAILYIHSIAEFDSKRNV----VFGTIQD 499 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + + S + + G AI + N ++ GY + Sbjct: 500 ITKRKQAEELLRESEARFRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTNLK 559 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 + + + +L + E K + + + + + Sbjct: 560 VSDITNSDDFAKDIIHLNRL-KNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLL 618 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579 Y + DI+ K ++ L K IAE Sbjct: 619 YYLAMIVDITTRKAAEDALQKYKLIAE 645 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 44/514 (8%), Positives = 130/514 (25%), Gaps = 51/514 (9%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +DA+ G + + + L +G +++G L ++ I + +L+ + + Sbjct: 29 LDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKDIASSRKAFAVLQEKEYIRYED 88 Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G V + + L ++ ++++ Sbjct: 89 LPLKTKSGQIQQVEFVSNVYWVGDEK------IIQCNIRDITDRKRAEELLRKTEERYRE 142 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 ++ + + +V + D + + Sbjct: 143 FYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVF 202 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGE 319 + + + E + + G + ++K +F E + Sbjct: 203 KATGTADTEFYMNRKDGSVVLMAFSGKIACDAKGNFKQTHCTLQDITQRHLADEAIRESQ 262 Query: 320 NLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + FV N + Y + ++++ + Sbjct: 263 RKYQALFESIGETAFVCYINKREWADEFVELNAVACDMLGYTHEELLKVSARNLFFHPSS 322 Query: 374 KLSDNNAIKPVMLY----------RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L + D I+ H ++ Sbjct: 323 GLVLKEITDELYAQKMVTRECNLPHKDGHNISVEMTFHIFDLQGRPAVLTLAH------- 375 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + R++E +L + G + ++ + + Sbjct: 376 ------------DITIRKKIARELEQSHRRLVKAEKVAGFGYWEFDLANGLVHPSDGARE 423 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 ++G E + M+ L ++ ++ +E + + +L + Sbjct: 424 IYGLKAEILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYDIEFK-IKRPTDGAILYIHS 482 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 I + + T+ DI++ KQ + L ++ Sbjct: 483 IAEFDSKRNVVFGTIQDITKRKQAEELLRESEAR 516 Score = 98.6 bits (244), Expect = 4e-18, Method: Composition-based stats. Identities = 47/407 (11%), Positives = 114/407 (28%), Gaps = 35/407 (8%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + + ++ L E + + + +P + + ++ + Sbjct: 8 LEASELRYRRLFETAQDGILILDANTGKIADANPFLLN-----ILGYAQEEILGKELWEI 62 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY------------LS 304 + + S + ++ I K G +Q S Y Sbjct: 63 GIFKDIASSRKAFAVLQEKEYIRYEDLPLKTKSGQIQQVEFVSNVYWVGDEKIIQCNIRD 122 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + + E E K PI + + S G N +L YK + I Sbjct: 123 ITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHW 182 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G P D + + + ++ + + M F + Sbjct: 183 FGE---FLQPDQVDLFRKRFPVFKAT--GTADTEFYMNR---KDGSVVLMAFSGKIACDA 234 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIAIINRE---GIILSTN 478 + + + + + ++ E+ + + IN+ + N Sbjct: 235 KGNFKQTHCTLQDITQRHLADEAIRESQRKYQALFESIGETAFVCYINKREWADEFVELN 294 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + GY E++L+ + ++ +T+ L ++ + + K+ Sbjct: 295 AVACDMLGYTHEELLKVSARNLFFHPSSGLVLKEITD--ELYAQKMVTRECNLPHKDGHN 352 Query: 539 LSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 +S+ + I L HDI+ K+ +L + + K Sbjct: 353 ISVEMTFHIFDLQGRPAVLTLAHDITIRKKIARELEQSHRRLVKAEK 399 Score = 92.0 bits (227), Expect = 4e-16, Method: Composition-based stats. Identities = 27/289 (9%), Positives = 74/289 (25%), Gaps = 38/289 (13%) Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E + + G + ANP L + Y + + + Sbjct: 8 LEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKD 67 Query: 373 PKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 S + + L + + W + + Sbjct: 68 IASSRKAFAVLQEKEYIRYEDLPLKTKSGQIQQVEF-VSNVYWVGDEKIIQCN------- 119 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 + D + + + + + + G ++ EG L N+ Sbjct: 120 -----------IRDITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWL 168 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 GY E+++ F FL+ + + + + + K+ ++ + Sbjct: 169 DDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTA---DTEFYMNRKDGSVVLMA 225 Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K + T+ DI++ + +++ + + Sbjct: 226 FSGKIACDAKGNFKQTHCTLQDITQRHLADEAIRESQRKYQALFESIGE 274 >gi|156973250|ref|YP_001444157.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi ATCC BAA-1116] gi|156524844|gb|ABU69930.1| hypothetical protein VIBHAR_00931 [Vibrio harveyi ATCC BAA-1116] Length = 786 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 177/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ + EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEDDYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELAEP 516 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + + Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium cellulolyticum H10] Length = 607 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 172/372 (46%), Gaps = 24/372 (6%) Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + + ++ + ++ +IL +DG+ + +G+ + N A KL G K F Sbjct: 257 AELKKTLSEISSQKNKVETILNYMADGVMAFDLKGMAIHANPAARKLLGNDAVSHPFKEF 316 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 V + + Y E + + + + ++ K P + Sbjct: 317 AVKVGLDVRIEDIVYFEESPVRESDTIINDMYVKV-----YFAVFTDTNKKPE--GIIVV 369 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 +HD +E ++ + S + +F+A VSHE+RTP+T+I ++E + + Sbjct: 370 LHDATEQQKLE--------------SMRREFVANVSHELRTPITSIKSYTETLLDGAV-- 413 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + + ID + + +V DLL +S++++ +MN E VSLD V + +++ Sbjct: 414 EDHETSNRFLSVIDSEADRMTRLVKDLLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKI 473 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 + K + + +IP I AD ++Q+ +N++SN+I +T G+I + N+ V Sbjct: 474 ESQRKNQKLESYVIGDIPVINADKDRLEQVVVNLISNSIKYTAEYGEITVYVGKIYND-V 532 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++V D+G+G+ L + + F ++ ++ GTGLGL +AK +V A+ G I S Sbjct: 533 YMKVTDSGIGIPGESLPRVFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSE 592 Query: 798 PAKGTLIEIIFP 809 KGT + + P Sbjct: 593 VGKGTEVVVKIP 604 >gi|161522483|ref|YP_001585412.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] gi|160346036|gb|ABX19120.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC 17616] Length = 799 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 105/618 (16%), Positives = 212/618 (34%), Gaps = 30/618 (4%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++V + F + P + + + L+ + Sbjct: 45 ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 104 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S P + + + + + + G Sbjct: 105 FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAGRAQFEAL 164 Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 ++ P G L Y N + L + D AG + D ++ Sbjct: 165 LNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 221 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + + + H ++ + + A+ + + R Sbjct: 222 AVEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 280 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ ++++A+ D + I+R+ I+S N A ++FGY E + F + Sbjct: 281 DAAQVR----RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 335 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + H L + L ++ + + + + + + I+ Sbjct: 336 -RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 393 Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + A + A + K + LA VSHE+RTPL I G+ EV++N Sbjct: 394 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 453 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L ++ + IDRS + +V D+LD S + +GK+ L PV + ++ + Sbjct: 454 SGDDAL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 509 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + Q A+ I + + D ++Q+ N++SNA+ FTP+GG + +S H Sbjct: 510 AAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 568 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +L V DTG G+ + F + +S G GLGL + + +V + G Sbjct: 569 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 628 Query: 793 YIFST-PAKGTLIEIIFP 809 + S +GT + P Sbjct: 629 VVDSAGRNRGTTFTVKLP 646 Score = 68.5 bits (166), Expect = 5e-09, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 65/260 (25%), Gaps = 21/260 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 D +G L ++ +G G L DV + D ++ T Sbjct: 176 DTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSAVEHALGGTRTTCE 235 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W VP+ A PI + G A +R S Sbjct: 236 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 295 Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250 + S IF + R + + ++ H Sbjct: 296 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 355 Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D + + ++ P + + T ++ + + + S R+ Sbjct: 356 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 415 Query: 309 PSLSAYFDEGENLTPETVDK 328 +A + ++ TV Sbjct: 416 GEQAATSNRLKDELLATVSH 435 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + + + G G R + + + + + + G Sbjct: 300 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 358 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + +AA P+ R+ G + R R +R + Sbjct: 359 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 413 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ + K ++ + S + + DD L+ + + S Sbjct: 414 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARS 473 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + T K T+ + F + + S+ Sbjct: 474 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 519 >gi|270308774|ref|YP_003330832.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] gi|270154666|gb|ACZ62504.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS] Length = 1379 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 105/739 (14%), Positives = 243/739 (32%), Gaps = 49/739 (6%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151 G + E + K G +++ + ++ + + ++ Sbjct: 526 GQILETNAAATKAYGYTRRQLLNKTVYEIRPPETRAAIPMQLAQADSEGILF--ESYHMR 583 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G+ V + I + R ++ K + K + Sbjct: 584 KDGSIFPVEVSSRGATI-NNTRVV-----VSVIRDISERKKAEEKFKTIFKHQETILATV 637 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + + + +Y + P+ + E+++ Sbjct: 638 PDIIAEMDTNKVYTWINESGLEFFGDDVIGKEASHYFIGKQDTYQKIRPVFSGGENTVYV 697 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVD 327 + + + +L++ + ++ LS + + +E + T D Sbjct: 698 ESWQRRKDGEPRLLGWWAHSLKDITGKTVGALSVASDITDRKRMEENLVKSAAEWSTTFD 757 Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVM 385 + G + N +F K + I L P + Sbjct: 758 SINDMICIVDAGYMILRVNNAFAKSLKLPPEEIIGKHCYELIHSTKQPHFMCPHKKTLET 817 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + + + + + + ++ Sbjct: 818 GRSQVSEFFEENLN-----------TWVEATTSPVLDANNRVVGSVHVIKNINERKKSEE 866 Query: 446 KMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + E S+ + +D I + + IL N A + + Y +++ F Sbjct: 867 ALRAERETYMSLFNSVTDAIIVHRPKSDNTPDKILEVNDACTAMLEYSRDELQNMTVRDF 926 Query: 501 LEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559 ++ + + + E + + T E+ + T E + +R I Sbjct: 927 VKGMAGDAALFTSVIEQIERNKEATFERTFVTKTGREIPVEIRPRIFLFGGKPTVITMAR 986 Query: 560 DISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 DIS+ K+ + + ++ A+ + + A ++HEI PLT ++GF+E++ N+ P Sbjct: 987 DISDLKKIEAEQQKLRERADMANRLAAVGEMAAGIAHEINNPLTGVVGFAELLSNRPDLP 1046 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + + I+ V++IV LL ++ + VS+ + + +++L Sbjct: 1047 VD---VQDSLKVINNGSLRVVEIVKRLLTFAR----QTKPIVSKVSITDIIDNSLTLRSY 1099 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSN 734 I I +A ++P I D ++Q+ LN++ NA + G + I T T Sbjct: 1100 VLETAGITIIRDYAPDLPWINVDPAQIQQVFLNLILNAEQSMKKAHEKGTLSIKTEKT-G 1158 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 E + + +D G G+ ++K +PF + G+GTGLGL L++ ++ + G+ + Sbjct: 1159 EYIRISFKDDGTGIAADVMDKIFQPFFTTKDP----GQGTGLGLSLSQGIILEHNGRIWA 1214 Query: 795 FSTPAKGTLIEIIFPLYDT 813 + P G I P+ T Sbjct: 1215 ENNPEGGATFVIELPVSTT 1233 Score = 157 bits (397), Expect = 8e-36, Method: Composition-based stats. Identities = 58/516 (11%), Positives = 141/516 (27%), Gaps = 42/516 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNT---WYGK 146 +G + + G ++ ++ ID + + L+ + + G+ Sbjct: 157 PNGRILAANPAACSMFGRTETEI-----REIGRDGLIDVTDPRLQQALEIRAATGEFKGE 211 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +GT I P+ E R I+ + + ++++ Sbjct: 212 LTFLRSDGTTFPGEITSKIYPVG--EGEL---RTAMIIRDVSKRKEAEEKLRTAEERYRL 266 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + + + K + T A+ L Sbjct: 267 TLDNMLEGCQIIGRDWRYIYLNTMAVRHSRKPKEALIGCTMMEAYPGIENTELFIHLRRC 326 Query: 265 EESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 E+ + + F + + + + L E Sbjct: 327 MENRIAARIENRFIFPDNAEGWFELSIEPVPE--GIFILSLDITRRRETEKQLQISEERF 384 Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 D+ PI + N + + Y + L+ + Sbjct: 385 HRIFDQVPIGIAITDQYFKFTQVNKTICRMMGYSEKE-------LTAITFKEITHPKYLA 437 Query: 382 KPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + S I+ + + + + + + Sbjct: 438 YDLKQLKLLSAGVIDNFERDKQYIRKDG-SVFWGHISVGAIKDDQGKILYYTPCILDITK 496 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFT 498 + ++ ++ + I + + D I +++ G IL TN A +K +GY +L K Sbjct: 497 RKQTEQALQ----KYKLIADDSRDIILFLDKNSGQILETNAAATKAYGYTRRQLLNKTVY 552 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556 T + + L + S + + K+ + + + + + Sbjct: 553 EIRPPETRAAIPMQLAQADSEGIL----FESYHMRKDGSIFPVEVSSRGATINNTRVVVS 608 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + DISE K+ + K K E + D +A + Sbjct: 609 VIRDISERKKAEEKFKTIFKHQETILATVPDIIAEM 644 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 51/573 (8%), Positives = 150/573 (26%), Gaps = 43/573 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146 D + ++++ + + +G ++ + +++ ++ + LL + + Sbjct: 398 TDQYFKFTQVNKTICRMMGYSEKELTAITFKEITHPKYLAYDLKQLKLLSAGVIDNFERD 457 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ ++ I + + + L K Sbjct: 458 KQYIRKDGS--VFWGHISVGAIKDDQGKILYYTPC--ILDITKRKQTEQ---ALQKYKLI 510 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + ++K I + + ++ + T Y + L + Sbjct: 511 ADDSRDIILFLDKNSGQILETNAAATKAYGYTRRQLLNKTVYEIRPPETRAAIPMQLAQA 570 Query: 265 EESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + + + + T+ N F Sbjct: 571 DSEGILFESYHMRKDGSIFPVEVSSRGATINNTRVVVSVIRDISERKKAEEKFKTIFKHQ 630 Query: 323 PETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + P + + N S L DD+ + Sbjct: 631 ETILATVPDIIAEMDTNKVYTWINESGLEFFG----DDVIGKEASHYFIGKQDTYQKIRP 686 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + + E + + + + + + + D + Sbjct: 687 VF------SGGENTVYVESWQRRKDGEP-RLLGWWAHSLKDITGKTVGALSVASDITDRK 739 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + + + ++ +D I I++ +IL N A +K P E+I+ K + Sbjct: 740 RMEENLVKSAAEWSTTFDSINDMICIVDAGYMILRVNNAFAKSLKLPPEEIIGKHCYELI 799 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557 + L Q E + + ++ Sbjct: 800 HSTKQPHFMCPHKKTLETGRSQVSEFFEENLN-----TWVEATTSPVLDANNRVVGSVHV 854 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----EIRTP--LTAIIGFSEVIK 611 + +I+E K+ + L ++ + +D A + H + TP + + + Sbjct: 855 IKNINERKKSEEALRAERETYMSLFNSVTD--AIIVHRPKSD-NTPDKILEVNDACTAML 911 Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 L N ++ + L ++ + Sbjct: 912 EYSRDELQNMTVRDFVKGMAGDAALFTSVIEQI 944 Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats. Identities = 55/499 (11%), Positives = 130/499 (26%), Gaps = 34/499 (6%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQN-TWYGKTTLWP 151 L + ++ G ++ G D L +N T + + Sbjct: 35 RLIYANPKMTVLTGFSLEEITGKPFVDFISPKYRPMVLERYQRRLAGENVTNQYEIEIVS 94 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 + + V I+ + + + I+ + + + L + Sbjct: 95 KDNRKIPVEINASYIEYEDKPANM------AILRDLTEYKMSQLKLAENEARCHELFKNS 148 Query: 212 KGHSSVEKEKYDIFSQQSPP---PHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + I + ++ + + + T E Sbjct: 149 YDAILLTIPNGRILAANPAACSMFGRTETEIREIGRDGLIDVTDPRLQQALEIRAATGEF 208 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + + E T+ Sbjct: 209 KGELTFLRSDGTTFPGEITSKIYPVGEGELRTAMIIRDVSKRKEAEEKLRTAEERYRLTL 268 Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D + Y N + ++ K + + + N + Sbjct: 269 DNMLEGCQIIGRDWRYIYLNTMAVRHSR-KPKEALIGCTMMEAY-----PGIENTELFIH 322 Query: 386 LYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L R IAA I + E ++ P + + + R + Sbjct: 323 LRRCMENRIAARIENRFIFPDNAEGWFELSIEPVPE--------GIFILSLDITRRRETE 374 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++++I + I + GIAI ++ N+ + ++ GY +++ F Sbjct: 375 KQLQISEERFHRIFDQVPIGIAITDQYFKFTQVNKTICRMMGYSEKELTAITFKEITHPK 434 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHD 560 + L +LS + E+ K+ + I + + L + D Sbjct: 435 YLAYDLKQLK-LLSAGVIDNFERDKQYIRKDGSVFWGHISVGAIKDDQGKILYYTPCILD 493 Query: 561 ISEWKQEKNKLSHAKKIAE 579 I++ KQ + L K IA+ Sbjct: 494 ITKRKQTEQALQKYKLIAD 512 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 29/267 (10%), Positives = 76/267 (28%), Gaps = 15/267 (5%) Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 E E E + +G + ANP+ + + G L+ Sbjct: 134 LAENEARCHELFKNSYDAILLTIPNGRILAANPAACSMFGRTETEI--REIGRDGLI--- 188 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 ++D + + + + L ++ + + + I Sbjct: 189 DVTDPRLQQALEIRAATGE---FKGELTFLRSDGTTFPGEITSKIYPVGEGE--LRTAMI 243 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + K+ + L+ +G II R+ + N + P E ++ Sbjct: 244 IRDVSKRKEAEEKLRTAEERYRLTLDNMLEGCQIIGRDWRYIYLNTMAVRHSRKPKEALI 303 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + +L + + +E + E L I Sbjct: 304 GCTMMEAYPGIENTELFIHLRRCMENRIAARIENRFIFPDNAEGWFELSIEPVP----EG 359 Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEK 580 + DI+ ++ + +L +++ + Sbjct: 360 IFILSLDITRRRETEKQLQISEERFHR 386 Score = 96.6 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 45/516 (8%), Positives = 136/516 (26%), Gaps = 39/516 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKT 147 I ++ + +IG + + + + H+ ++ + + Sbjct: 278 IGRDWRYIYLNTMAVRHSRKPKEALIGCTMMEAYPGIENTELFIHLRRCMENRIAARIEN 337 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +L+ P+ G F + + + +++F + Sbjct: 338 RFIFPDN--AEGWFELSIEPV------PEGI--FILSLDITRRRETEKQLQISEERFHRI 387 Query: 208 HEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLL 262 + ++ + + K + + H + K L Sbjct: 388 FDQVPIGIAITDQYFKFTQVNKTICRMMGYSEKELTAITFKEITHPKYLAYDLKQLKLLS 447 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + + + G ++++ + Y + ++ Sbjct: 448 AGVIDNFERDKQYIRKDGSVFWGHISVGAIKDDQGKILYYTPCILDITKRKQTEQALQKY 507 Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 D G + N + Y + + + + + A Sbjct: 508 KLIADDSRDIILFLDKNSGQILETNAAATKAYGYTRRQLL------NKTVYEIRPPETRA 561 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 P+ L ++D I + ++ + + + + + Sbjct: 562 AIPMQLAQADSEGILFESYH--MRKDGS---IFPVEVSSRGATINNTRVVVSVIRDISER 616 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + K + +IL D IA ++ + N + + FG +D++ K + + Sbjct: 617 KKAEEKFKTIFKHQETILATVPDIIAEMDTNKVYTWINESGLEFFG---DDVIGKEASHY 673 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSL 556 + + S + K+ + L L + Sbjct: 674 FIG--KQDTYQKIRPVFSGGENTVY-VESWQRRKDGEPRLLGWWAHSLKDITGKTVGALS 730 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 DI++ K+ + L + +D + V Sbjct: 731 VASDITDRKRMEENLVKSAAEWSTTFDSINDMICIV 766 Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 2/138 (1%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + K+ + +++E ++DGI II ++ ++ N ++ L G+ +E+I KPF F+ Sbjct: 7 RNKLHQSNILYSTLVEKSNDGIIII-QDERLIYANPKMTVLTGFSLEEITGKPFVDFISP 65 Query: 504 NTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 ++ Y + ++ E + + + + + + D++ Sbjct: 66 KYRPMVLERYQRRLAGENVTNQYEIEIVSKDNRKIPVEINASYIEYEDKPANMAILRDLT 125 Query: 563 EWKQEKNKLSHAKKIAEK 580 E+K + KL+ + + Sbjct: 126 EYKMSQLKLAENEARCHE 143 >gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3] Length = 768 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 101/560 (18%), Positives = 189/560 (33%), Gaps = 33/560 (5%) Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEGENLTP 323 + +T L + L + L H + Sbjct: 71 TLFLSDPAAYTAPLPDRLVQLGTFILIGALVCAIASLLHHTRLTNDRARRREAATRRQFE 130 Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 + P +G L Y N + L + + + L Sbjct: 131 AVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAV-GRPVRDVLRIVDHEGRRVPTT 189 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 P+ A++ H +Q + + + + + + R Sbjct: 190 PLDHAL---GGAEATSDRHWLQAGSGEPVPIVAVASPIGDADGNLDGAVLLLRDAGADRA 246 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++ +++EA+ D I I+ G I S N A ++FGY D + F + Sbjct: 247 RVDASRLQ----HAVVEASPDAIVGIDASGRIASWNAAAQRIFGYDEADARGRRFDTLIA 302 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558 + + L + L ++ + + + + + + Sbjct: 303 --RRWLRLNPLADAFDAMQEPVGPLELLCVRRDGRRFRATVSACPVQGDARAYVALSLTL 360 Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 D+ + + + A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 361 RETGAQRRRDLRAQRSLQGARDA-RDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 419 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N L + + IDRS + +V D+LD S + +GK+ L PV + S+ Sbjct: 420 RNTGDHAL----QHQAVDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSD 475 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + Q A+ IL+ + + D ++Q+ N++SNA+ FTP GG + + Sbjct: 476 QVGTFQTAASSAGILLEFDCDASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLA 535 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 +L V DTG G+ F + +S G GLGL + + + + G Sbjct: 536 -RDGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 594 Query: 791 KFYIFST-PAKGTLIEIIFP 809 + S +GT + P Sbjct: 595 SVTVASAGRDRGTTFTVTLP 614 Score = 80.8 bits (198), Expect = 9e-13, Method: Composition-based stats. Identities = 29/252 (11%), Positives = 63/252 (25%), Gaps = 9/252 (3%) Query: 76 FDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPN 130 F+ + R + D +G L ++ + +G + +G + DV P Sbjct: 129 FEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVPT 188 Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190 + L W G+ VPI A PI + G ++ D Sbjct: 189 TPLDHAL--GGAEATSDRHWLQAGSGEPVPIVAVASPIGDADGNLDGA--VLLLRDAGAD 244 Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + + G + + + Q + + A + Sbjct: 245 RARVDASRLQHAVVEASPDAIVGIDASGRIASWNAAAQRIFGYDEADARGRRFDTLIARR 304 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 L +E P + + ++ +Q +++ Sbjct: 305 WLRLNPLADAFDAMQEPVGPLELLCVRRDGRRFRATVSACPVQGDARAYVALSLTLRETG 364 Query: 311 LSAYFDEGENLT 322 D + Sbjct: 365 AQRRRDLRAQRS 376 >gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira thiodismutans ASO3-1] Length = 862 Score = 330 bits (846), Expect = 6e-88, Method: Composition-based stats. Identities = 106/425 (24%), Positives = 183/425 (43%), Gaps = 26/425 (6%) Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS- 462 + + + A + E + +E + ++ +R E + ++L+A S Sbjct: 5 YKDLAQENELLRRELKVAREAAEITSKMVVEQFEQTEQMLRRYREANAQR-RAVLDAASR 63 Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILS--- 518 I + G I N L GY D+ + L L+ Sbjct: 64 MSIIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLHTTEDLERHRASLKATLTSST 123 Query: 519 --------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566 L+Q + LL + + I + + Y T D++ K Sbjct: 124 GMEIFEHYTSLQQHDTGEWQYICSDGTLLPVSLSITSIYNAEGMREGYLFTAMDLTLRKS 183 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + KL AK+ AE+ S+ + +FLAR+SHEIRTP+ AI G + ++ + N +Y Sbjct: 184 LEQKLVAAKEEAEQASACRGEFLARMSHEIRTPMNAITGMAYLLGSTEL----NHVQQDY 239 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I S + +L I+ND+LD SKI++G+M L P SL + + +++V A EK + I Sbjct: 240 VRKIIDSADTLLAIINDILDFSKIDAGRMELEELPFSLQQIIGRMLNVVGARAEEKGLKI 299 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV--ILRVR 742 +T +P ++ D + QI LN+ SNA+ FT G + ++ +V + V Sbjct: 300 QTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFTSQGEVALTVTLQKERQHQVDLLFCVS 359 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG G+T + E+ + F Q S + G+GLGL + K + G+ ++ S P +G+ Sbjct: 360 DTGTGITPEKAEQLFQAFQQADGSITRKYGGSGLGLAICKELTQMMGGEIWVESIPDQGS 419 Query: 803 LIEII 807 Sbjct: 420 SFFFT 424 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 35/289 (12%) Query: 67 YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDIL 125 +++ V D R D G + + +G + + G + + Sbjct: 49 EANAQRRAVLDAASRMS--IIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLHTTE 106 Query: 126 HIDPNNHIGDL----------------LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169 ++ + L++ +T G+ +GT +P+ L+ IY Sbjct: 107 DLERHRASLKATLTSSTGMEIFEHYTSLQQHDT--GEWQYICSDGTL--LPVSLSITSIY 162 Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 + G+ + L K L++K E + S+ E S + Sbjct: 163 NAEGMREGYLFTAM---------DLTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEI 213 Query: 230 PPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 P + L H + + + + + DF I+ + ++ Sbjct: 214 RTPMNAITGMAYLLGSTELNHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEEL 273 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV--DKCPIPFFV 335 +LQ + R P+++ D + + Sbjct: 274 PFSLQQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQII 322 >gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans ES-2] Length = 1346 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 89/430 (20%), Positives = 168/430 (39%), Gaps = 56/430 (13%) Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + ++ + ++ ++E T DGI + N +G + N+A + Sbjct: 427 ANDLAYGIAVLRIRAAHADQEQALRASELRYRLLVEQTVDGIFLANAQGQYIDVNQAGAA 486 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + GY +I + + + + + + K+ + + Sbjct: 487 MLGYSTVEICTLNISDVIAIEEIGRIPDEVARFKNG---SVVVSEWQFKRKDGSIFLGEV 543 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK---------------------------- 575 + + + C + DI+ ++ +N+L A+ Sbjct: 544 -VGRQIENGCIQGILRDITFRREAENELQRARLAALNLAQDALEARAKLEILNDSLESEI 602 Query: 576 --------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 A+ S KSDFLA +SHEIRTP+ AIIG + + + P Sbjct: 603 SDRKLALKDLEIARNAADLASRAKSDFLANMSHEIRTPMNAIIGLTRITLDSELAP---- 658 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + ++ + + +L+I++D+LD SKIE+ K+ + L++ + E L E Sbjct: 659 KQRDHLRKVYNASRALLNILDDILDYSKIEANKLEIERVEFILEDVIRECFDLFMQKLQE 718 Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736 K + + I +L D + QI N+++NAI FT G +I I S Sbjct: 719 KELELFIEIDPLISCSLLGDPLRLGQILNNLINNAIKFTQRG-EIHIRAALISENNQTLN 777 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 + VRDTG+GM + ++ F Q +S + G+GLGL ++K +V+ G + S Sbjct: 778 LKFSVRDTGIGMDQSQQDRLFNAFTQADSSITRKYGGSGLGLTISKRLVELMGGALSVAS 837 Query: 797 TPAKGTLIEI 806 G+ Sbjct: 838 EKDIGSEFTF 847 Score = 45.0 bits (105), Expect = 0.051, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 7/137 (5%) Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHY 512 S+L + + + + + EG IL+ NRA FG +E I +P + E TP + Sbjct: 145 QSMLNSLVESVLVFSPEGKILACNRAAELFFGCSLETIQSNLRPVQLLHENGTPFLEEDI 204 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLTMHDISEWKQE 567 I + + + + + L++ +ISE K+ Sbjct: 205 PVNITIRTKAACRNVPVGYADLSGMVRWVLANCEPVIEPLTGEIKAAVLSLLEISEQKKN 264 Query: 568 KNKLSHAKKIAEKESSH 584 ++ + S+ Sbjct: 265 ADEQLRLNRTLRAYSAS 281 Score = 42.7 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 9/167 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +A G ++++ +G ++ + + DV I I K + Sbjct: 468 IFLANAQGQYIDVNQAGAAMLGYSTVEICTLNISDVIAIEEIGRIPDEVARFKNGSVVVS 527 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G+ + R+ GI+ + +R Sbjct: 528 EWQFKRKDGSIFLGEVV---------GRQIENGCIQGILRDITFRREAENELQRARLAAL 578 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 +L + + + D + L +K+ + Sbjct: 579 NLAQDALEARAKLEILNDSLESEISDRKLALKDLEIARNAADLASRA 625 >gi|149279499|ref|ZP_01885629.1| PAS [Pedobacter sp. BAL39] gi|149229792|gb|EDM35181.1| PAS [Pedobacter sp. BAL39] Length = 814 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 107/494 (21%), Positives = 203/494 (41%), Gaps = 16/494 (3%) Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST-LLDAPKLSDN 378 + PI + ++ + + L +++ + + + P ++ Sbjct: 38 QLAAIICNVPISLITLIDETRQWFKSRTGLEISETPREVAFCQYTIMDREVFEVPDTWND 97 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + +L D + T + + I + P+ + +V Sbjct: 98 ERFRSNVLVTGDPGIRFYAGYPLTDP-DGYALGTLCVIDRKPNQLTPQQHTALRLLSAEV 156 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 I +R+ + E+ I ++D I + + +G++ N + L G E +L + Sbjct: 157 MQLIVERRQKEELKNFEKIFRLSNDLICVSDHQGLLKRVNPSFKMLLGIDPESMLGQSLF 216 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 + + + S + + I + ++ + P + Sbjct: 217 ELVHPEDLEETYQRMEHLGSGEA--IVNFIHRVRHTSGAYIDIQWTVTPDPSTGDLFAIG 274 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+E K ++ L A +AE+ S KS+FLA +SHEIRTPL IIGF++++ Sbjct: 275 RDITEKKAQERHLKQAIAMAEEASIAKSEFLANMSHEIRTPLNGIIGFADLVLKTEL--- 331 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + ++Y ++ S N +L I+ND+LD SKIE+G+M LH E L E +A ++ Sbjct: 332 -SEVQLQYLTVVNESANSLLAIINDILDFSKIEAGRMELHLEASDLHELSCQAADIITFQ 390 Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----T 732 +K I + + ++P I D +KQ+ +N+LSNA FT +G +I + Sbjct: 391 IQQKGIEMLLNVPLDLPESIWTDPLRLKQVIINLLSNAAKFTDTG-EIELKIEVLEYLSA 449 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 VRDTG+G+ + + + F Q S R GTGLGL ++ ++ + Sbjct: 450 EAARFRFSVRDTGIGIKLEKQREIFEAFAQEDVSTTKRYGGTGLGLTISNELLALMDSRL 509 Query: 793 YIFSTPAKGTLIEI 806 + S+P G+ Sbjct: 510 QLMSSPGVGSTFFF 523 Score = 44.2 bits (103), Expect = 0.083, Method: Composition-based stats. Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 9/137 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTT 148 D G LK ++ +G M+G L ++ ++ + L Sbjct: 187 DHQGLLKRVNPSFKMLLGIDPESMLGQSLFELVHPEDLEETYQRMEHLGSGEAIVNFIHR 246 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + G + + + P F I K+ Sbjct: 247 VRHTSGAYIDIQWTVTPDPSTGD--------LFAIGRDITEKKAQERHLKQAIAMAEEAS 298 Query: 209 EIKKGHSSVEKEKYDIF 225 K + + Sbjct: 299 IAKSEFLANMSHEIRTP 315 >gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria maculans] Length = 1313 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 102/551 (18%), Positives = 201/551 (36%), Gaps = 61/551 (11%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLST 368 ++A E E + P+ + + L + + T I Sbjct: 428 EIAAQIQENERQFESIANFMPVMVWTTTPDGLHDWFSQRWYDYTGLTVEQSIGEG---WR 484 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L P+ R M + + Sbjct: 485 LPFHPEDMKITVKSWFHCL-KTGEEYNTEYRCQRF---DGEWRWMLGRALPIFDDSGRIV 540 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST----------- 477 G + D + +++ QL +++ + +NR+ ++ Sbjct: 541 KWIGTCTDIHDLVVARQEARRTREQLQQVIQHAKILLWAVNRDNKLVLLEGDDGDTKDDG 600 Query: 478 ------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL---EKI 528 NR ++ G + D+ + + + EIL + + I Sbjct: 601 KLGGGGNR--EEMLGQDIYDVFQ------IPAMERERWQEPIHEILEGKQQTEIVMGRYI 652 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWK----------QEKNKLSH 573 + +L+ L + D++E + +E ++L Sbjct: 653 SEARFYRTRLVPLLNTSRTAGVDGKVFVDGVIGVSMDVTELREREEQLREQEKENSRLLA 712 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A++ S KS+ LA SHE+RTP+ +IG SE++ + N E I RS Sbjct: 713 NTAAAKEASRMKSNLLANTSHELRTPIAGVIGMSELLFDMDL----NEEQKECTENIHRS 768 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 + +L ++ND+LD SK+ESG++++ SL + + ++ A K + ++ + Sbjct: 769 ASSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLAYQSFIQDE 828 Query: 694 I---PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVG 747 + R++ D ++QI +N+L+N+I FT G ++ + + + V V DTG+G Sbjct: 829 VEMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTVNFTVSDTGIG 888 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++ +PF Q +S R GTGLGL ++K +V+ G+ ++ S +GT Sbjct: 889 IEEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSKLGQGTTATFW 948 Query: 808 FPLYDTSHPHD 818 P +D Sbjct: 949 IPFSKVPCAND 959 Score = 60.8 bits (146), Expect = 9e-07, Method: Composition-based stats. Identities = 23/224 (10%), Positives = 52/224 (23%), Gaps = 6/224 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144 W G S+ G + IG + LK + Sbjct: 451 VWTTTPDGLHDWFSQRWYDYTGLTVEQSIGEGWRLPFHPEDMKITVKSWFHCLKTGEEYN 510 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKK 203 + +G + + ALPI+ + + G + + + ++ Sbjct: 511 TEYRCQRFDGE--WRWMLGRALPIFDDSGRIV--KWIGTCTDIHDLVVARQEARRTREQL 566 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + K +V ++ + + D+ + P + Sbjct: 567 QQVIQHAKILLWAVNRDNKLVLLEGDDGDTKDDGKLGGGGNREEMLGQDIYDVFQIPAME 626 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 E P E + +Y + L+ Sbjct: 627 RERWQEPIHEILEGKQQTEIVMGRYISEARFYRTRLVPLLNTSR 670 >gi|84685347|ref|ZP_01013245.1| sensory box histidine kinase/response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666504|gb|EAQ12976.1| sensory box histidine kinase/response regulator [Rhodobacterales bacterium HTCC2654] Length = 847 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 102/479 (21%), Positives = 191/479 (39%), Gaps = 20/479 (4%) Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 SV I+ A D + L + A A L + Sbjct: 117 RDFLDTSVPLIDGADDALARELPVLFEDMLDTRTTVRELAATGLGYFAQQADLRREEIAD 176 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + R +E ++ +I+ + D I + Sbjct: 177 TLFYLAILTIVVL---TGLFAASVVLFRLNRSNEARARTIEAASRRMETIVNTSLDAIVV 233 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526 NR G I++ N A +FGY E ++ + + + + + + + ++ + Sbjct: 234 SNRTGRIIAFNDAAEIIFGYKREQVIGQLMSEIIVPPHLRNAHEAGMERFRTTGEKRVIG 293 Query: 527 K---ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + + + + I+ S + + DIS + + L A+ A Sbjct: 294 QGRIKLEAMRSDGSVFPAEMAIESAEGSDGEIFVGYLRDISHRVKAETDLVEARDKAVAG 353 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 KS+FLA +SHE+RTPL ++G ++K + + +Y + ++ SG L+L + Sbjct: 354 EKAKSEFLAVMSHEMRTPLNGLLGTLALLKGTKLSA----KQAQYVDNLEVSGGLLLTHI 409 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILAD 700 ND+LD++K E+GK+++ F P L V + + A+ I S +P ++ D Sbjct: 410 NDVLDVTKYEAGKLDVDFVPTDLSALVRSVVDNQRDLASASENTIEWSWVGKPLPPVMTD 469 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAM 757 + ++Q+ +N++ NA+ FT GG+I I +V + V DTG+G+ ++++ Sbjct: 470 PQRLRQVLINLVGNAVKFT-RGGRIRIEIGAVPQGGGADVTITVSDTGIGIAPEDIDRLF 528 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + F S GTGLGL +A+ + A G S +G+ I PL S P Sbjct: 529 EDFETGDRSYGRARNGTGLGLGIARRLTRALGGTIGAESELGEGSTFWIDLPLDYASDP 587 Score = 50.8 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 26/331 (7%), Positives = 71/331 (21%), Gaps = 20/331 (6%) Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----- 185 + L+ T W T V ++ L I + V Sbjct: 31 GEVLRKLRLLETAASDNIQW----TLSQVEVEYLDLAIAIEQFQLGRTDDLDTVRREFDI 86 Query: 186 -VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244 +R+ ++ + + + Sbjct: 87 FYSRIRTLSEGDLYAGLREQPAFARQLSVIRDFLDTSVPLIDGADDALARELPVLFEDML 146 Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304 + ++ T + E D + + Sbjct: 147 DTRTTVRELAATGLGYFAQQADLRREEIADTLFYLAILTIVVLTGLFAASVVLFRLNRSN 206 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 ++ A E + ++D G + N + ++ YK I Sbjct: 207 EARARTIEAASRRMETIVNTSLDAI---VVSNRTGRIIAFNDAAEIIFGYKREQVIGQL- 262 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFIPFEKAN 422 +S ++ P L + + + + R L ++ + ++ Sbjct: 263 -MSEIIVPPHLRNAHEAGMERFRTTGEKRVIGQGRIKLEAMRSDGS---VFPAEMAIESA 318 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 + + G + + + + Sbjct: 319 EGSDGEIFVGYLRDISHRVKAETDLVEARDK 349 Score = 40.0 bits (92), Expect = 1.8, Method: Composition-based stats. Identities = 27/338 (7%), Positives = 75/338 (22%), Gaps = 32/338 (9%) Query: 93 GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTWYGKT 147 G + ++ G ++IG + ++ H+ +++ G+ Sbjct: 238 GRIIAFNDAAEIIFGYKREQVIGQLMSEIIVPPHLRNAHEAGMERFRTTGEKRVIGQGRI 297 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 L + P ++A + E G + K Sbjct: 298 KLEAMRSDGSVFPAEMAIESAEGSDGEI----FVGYLRDISHRVKAETDLVEARDKAVAG 353 Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + K +V + + + ++ K + + +L T +L Sbjct: 354 EKAKSEFLAVMSHEMRTPLNGLLGTLALLKGTKLSAKQAQYVDNLEVSGGLLLTHINDVL 413 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + + + ++ + S + Sbjct: 414 DVTKYEAGKLDVDFVPTDLSALVRSVVDNQRDLASASENTIEWSWVGKPLPPVMTDPQRL 473 Query: 323 PETVDKC-PIPFFVYSHGNLFYANPSFLLLTK------YKSVDDIEIAGGLSTLLDAPKL 375 + + G + + + L + + Sbjct: 474 RQVLINLVGNAVKFTRGGRIRIEIGAVPQGGGADVTITVSDTGIGIAPEDIDRLFEDFET 533 Query: 376 SDNNAIK-----------PVMLYRSDRTCIAASARLHT 402 D + + L R+ I A + L Sbjct: 534 GDRSYGRARNGTGLGLGIARRLTRALGGTIGAESELGE 571 >gi|91793273|ref|YP_562924.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans OS217] gi|91715275|gb|ABE55201.1| PAS/PAC sensor hybrid histidine kinase [Shewanella denitrificans OS217] Length = 935 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 115/776 (14%), Positives = 251/776 (32%), Gaps = 81/776 (10%) Query: 105 TIGNYAFKMIGM--------------RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT--- 147 +G + ++ R +S + L+ + Sbjct: 1 MLGYCSDEVCNRLSMAVITLNEELVARAAALSTEFGDNIAPGFEALVFKAKHDLDDINPL 60 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 TL G+ ++ + G+ G + R + D + + L Sbjct: 61 TLIRKNGS--RFSAMVSVTSLRDATAAVIGYLLIGTDNSARKEADDKLWQAS--QYARSL 116 Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 E I L + + + +Y ++ Sbjct: 117 LEASLDPLVTINLSGKITDVNEASIKATGLDREALIGTDFSHYFTDPHEANKGYREAFSN 176 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + N +++ + + + DE Sbjct: 177 GSVT-DYPLTIRHRNGRLIDVLYNASVYRDHKGQVLGLFAAARDITARKRADEALLKAGA 235 Query: 325 TVDKCP-----IPFFVYSHGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTL 369 + + G + N + Y ++D I + Sbjct: 236 LQNAIFNSANFSSIATDAKGVIQIFNVGAERMLGYAAIDVINKLTPADISEPQEIVIRAR 295 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + +L L R I L I+ + A+ + + Sbjct: 296 ALSHELDTPITPGFDALVFKARRGIEDIYELTYIRKDGSRFPAI-VSVTALRDAHNNIIG 354 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I ++ + + + +I + + + +G+I N ++ GY Sbjct: 355 YLLIGTDNTARKRAEEALLKAGALQRAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTA 414 Query: 490 EDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKE 535 +++ K + + L++ L + E K+ Sbjct: 415 AEVMDKITPADISDPKEMVLRAAQLSKELETSIAPGFEALVFKASRGIEDIYQLTYIRKD 474 Query: 536 EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK--------------LSHAKKI 577 + + L + + L D + Q + + L +K I Sbjct: 475 GSRFPAVVSVTALRDAYNVIIGFLLIGTDNTARIQVEEEREQLTATLQDKNAELESSKAI 534 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AEK + KS+FL+ +SHE+RTPL AI+GF+++++ + I ++G + Sbjct: 535 AEKANRAKSEFLSSMSHELRTPLNAILGFAQLLEKGQPTLTHTQEVR--IQQIIKAGWYL 592 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L ++N++LD++ IESG+++L E V L + ++E+ ++V+ A ++ I + ++ Sbjct: 593 LSLINEILDLAVIESGRLSLSRESVLLIDVINESKAMVEPQALKREIRLNFLPFSHALHA 652 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYE 752 AD +KQ+ +N+L+NAI + G I + T + + + ++D G G++ Sbjct: 653 NADHTRLKQVLINLLTNAIKYNRQHGTITVECTEVKAIDKLQDRIRITIKDNGYGLSEAN 712 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + +PF ++ + EGTG+GL + K +V+ G + S G+ I Sbjct: 713 ISQLFQPFNRL-GQESGSQEGTGIGLVVTKQLVELMGGTIGVKSQVGVGSEFWIEL 767 Score = 70.8 bits (172), Expect = 9e-10, Method: Composition-based stats. Identities = 46/448 (10%), Positives = 112/448 (25%), Gaps = 58/448 (12%) Query: 50 EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109 + S + + + + Y S DP+ I+ G + +++E K G Sbjct: 95 DNSARKEADDKLWQASQYARSLLEASLDPLV-------TINLSGKITDVNEASIKATGLD 147 Query: 110 AFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 +IG D S DP+ + + T+ G + + A Sbjct: 148 REALIG---TDFSHYFT-DPHEANKGYREAFSNGSVTDYPLTIRHRNGRL--IDVLYNAS 201 Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-------------- 212 + G F + + + Sbjct: 202 VYRDHKGQVLGL--FAAARDITARKRADEALLKAGALQNAIFNSANFSSIATDAKGVIQI 259 Query: 213 ----GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + D+ ++ +P + V D + L+ Sbjct: 260 FNVGAERMLGYAAIDVINKLTPADISEPQEIVIRARALSHELDTPITPGFDALVFKARRG 319 Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + + +++ L++ YL + +E Sbjct: 320 IEDIYELTYIRKDGSRFPAIVSVTALRDAHNNIIGYLLIGTDNTARKRAEEALLKAGALQ 379 Query: 327 DKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS----------TLLD 371 + G + N + Y + + ++ Sbjct: 380 RAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMDKITPADISDPKEMVLRAAQL 439 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + +L + A L I +L I+ + A+ + + + Sbjct: 440 SKELETSIAPGFEALVFKASRGIEDIYQLTYIRKDGSRFPAV-VSVTALRDAYNVIIGFL 498 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILE 459 I ++ + ++E E QL + L+ Sbjct: 499 LIGTDNT----ARIQVEEEREQLTATLQ 522 Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 21/157 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDI-LHIDPNNHIGDLLK-------- 138 DA G ++ + + +G A +++ D+SD + + L+ Sbjct: 393 TDAKGVIQIFNVGAERMLGYTAAEVMDKITPADISDPKEMVLRAAQLSKELETSIAPGFE 452 Query: 139 -------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR--V 189 R + T +G+ P ++ + GF G + R V Sbjct: 453 ALVFKASRGIEDIYQLTYIRKDGS--RFPAVVSVTALRDAYNVIIGFLLIGTDNTARIQV 510 Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 + + L L K + L K + K + S Sbjct: 511 EEEREQLTATLQDKNAELESSKAIAEKANRAKSEFLS 547 >gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642] Length = 779 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 201/426 (47%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLVERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G I + N ++ GY ++I+ + F+VF Q + Sbjct: 275 IEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + K+ ++I S +S DIS+ + + L Sbjct: 333 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ + Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAADANIELQPLPNL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + I ++AD + + Q+ LN+LSNAI + GQ+ I T+ +V + V DTG G+ Sbjct: 508 PDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAE-QVTVSVVDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TP +G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPL 623 Query: 811 YDTSHP 816 P Sbjct: 624 VRVQPP 629 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/259 (8%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 + +G+ + + + A Y + E GF R + + + Sbjct: 342 TEEGWRQRKDGSRFWASVVITAQ--YDSHDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 459 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + ++L+ ++ + + E N P Sbjct: 460 ------LDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAADANIELQPLPNLPDEIGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|224826722|ref|ZP_03699822.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] gi|224600942|gb|EEG07125.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002] Length = 1418 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 119/782 (15%), Positives = 245/782 (31%), Gaps = 87/782 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ++ G ++ + + G ++ G ++ ++ P + + Sbjct: 377 VNDEGIIQMANLGAEQLFGYRRDELPGRAYGELLELAQAVPPQD--GVTPEGAETRLQGV 434 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREF-SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ + I L+ + F R +V +R S + Sbjct: 435 GIRRDGSRFFTGITLSGMA----QGRFGRHTRRLLVVRDEHEQRLAEMAHERSLALLSAI 490 Query: 208 HEIKKGHSS-------------------VEKEKYDIFSQQSPPPH------LRMKNKVSS 242 + + E I + R + + Sbjct: 491 SGVTSLLLANRARLHVFTRLLALFLEFCHAAEGGLIVVEPDADGGQRFRFLARQGCRDTL 550 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + L + E + P + Q+ ++ + Sbjct: 551 AWDVLLDSLSELLATADGDMELEMGAAPWRLMPVRQEQRLMALVCLKAPDQDAMAQAQDA 610 Query: 303 LSHR------------NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349 L + P+ + + AN + Sbjct: 611 LLAAFASIMGFYAEENRRKASEQRLRAVLQEEEAVYAASPVGLLRIDEDFRILRANHAAE 670 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNR 407 L GGL L ++D P+ R+ ++ N Sbjct: 671 QLFGTAR-------GGLLPLHLFELVADQQIWIPLGQALCRAREQGDRVQYEAECLRSNG 723 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILEA 460 + + + ++ + ++ QL +E+ Sbjct: 724 MPVWVLIEGQALH--GESVQGGMILACLDITERKLAEFALQQARDEAAESRHQLLGAIES 781 Query: 461 TSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 S+ + +L N+ + L G + +L F ++T + Sbjct: 782 ISEAFVLYGPHDQLLLCNQRFADLVSEGQSSDALLGISF-----EDTVRALLQRGERPEP 836 Query: 519 LDLRQTLEKITLGSTKEE--------KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + ++ +I +++P +I+ KQ++ + Sbjct: 837 GFDAVQWLAERVHRHRQGASSFSLQLGEAWWQINERQIP-GRGTVGVWANITALKQQEAE 895 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A + A+ + KS FLA +SHEIRTP+ ++G E++ +P + + I Sbjct: 896 LIEACRQADSANHAKSAFLAAMSHEIRTPMNGVLGMVELLALTPL----DPEQHDAVDTI 951 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 S +L +++D+LD SKIE+G+++L E S+ V++ L A K + T Sbjct: 952 QESAKTLLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENARRKGLWFTTWV 1011 Query: 691 ANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGV 746 + P +L D ++QI N +SNA+ FT G ++ +S + + V DTG+ Sbjct: 1012 DERVAPCLLLDSLRLRQILQNFVSNALKFTQQGSVEMRVSLLAEDELAQTLRFDVVDTGI 1071 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 GMT + + +PF Q + R GTGLGL + + + G + S P +G+ + Sbjct: 1072 GMTRDTVARLFEPFTQAESDTTRRFGGTGLGLAICRRLARLMGGDVSLDSEPGQGSCATL 1131 Query: 807 IF 808 Sbjct: 1132 TL 1133 Score = 73.1 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 61/451 (13%), Positives = 123/451 (27%), Gaps = 24/451 (5%) Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 EGT + + + P E R G + + L D+ Sbjct: 66 FLEREGTQTRLLLVRSQPPGRYEAPELQRLRQQGDRALAEALHSVEVLEGTRDRANLVAI 125 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + H + + + D + P ++ S H + + E Sbjct: 126 RQRYDHLAKLRTEIDRY--LQHHPGRADESLAFSWQLASNHLFESIDAELANHSYRLGDD 183 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E + + + + L R + S A ++ Sbjct: 184 DNELQSRLAGVKFDAWLLRRAIGSEGAALLMRLELKRRLNSSDEADLASQRERGLLMLEL 243 Query: 329 CPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKP 383 G L N + L + + E+ G ++L + + Sbjct: 244 LQSNIRYLGPGALSQRLTKLNAATYQLFRMSNAQLAELQGAAASLPVSGVYVEAIRRAHD 303 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 +L+ SD A + L + L +T + A + + R Sbjct: 304 EVLFLSDDASRLAESTLEAHRQALYRELQLTVLASLLAFALYAALLFAVMRRILRPLRRL 363 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 ++ +L+AT D I +N EGII N +LFGY +++ + + LE Sbjct: 364 QQ-----------VLDATRDAILTVNDEGIIQMANLGAEQLFGYRRDELPGRAYGELLEL 412 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHD 560 + L+ + + + + + + L + D Sbjct: 413 AQAVPPQD---GVTPEGAETRLQGVGIRRDGSRFFTGITLSGMAQGRFGRHTRRLLVVRD 469 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 E + + + + S S LA Sbjct: 470 EHEQRLAEMAHERSLALLSAISGVTSLLLAN 500 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 41/389 (10%), Positives = 104/389 (26%), Gaps = 27/389 (6%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYG 145 ID + + + G ++ + L ++ + I + ++ + Sbjct: 655 RIDEDFRILRANHAAEQLFGTARGGLLPLHLFELVADQQIWIPLGQALCRAREQGDRVQY 714 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + G + V + + ++ + + G ++ + + Sbjct: 715 EAECLRSNG--MPVWVLIEGQALHGESVQ-GGM--ILACLDITERKLAEFALQQARDEAA 769 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 G E + ++ R + VS A + LL Sbjct: 770 ESRHQLLGAIESISEAFVLYGPHDQLLLCNQRFADLVSEGQSSDALLGISFEDTVRALLQ 829 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEG 318 E P + + + +Q + E++ + R + A Sbjct: 830 RGERPEPGFDAVQWLAERVHRHRQGASSFSLQLGEAWWQINERQIPGRGTVGVWANITAL 889 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD------- 371 + E ++ C + +A +FL ++ + G+ LL Sbjct: 890 KQQEAELIEACRQA------DSANHAKSAFLAAMSHEIRTPMNGVLGMVELLALTPLDPE 943 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 D L R + S + ++ I + + EN + Sbjct: 944 QHDAVDTIQESAKTLLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENARRK 1003 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEA 460 G+ + ++ ++L IL+ Sbjct: 1004 GLWFTTWVDERVAPCLLLDSLRLRQILQN 1032 >gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides sp. GT] Length = 581 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 96/464 (20%), Positives = 186/464 (40%), Gaps = 29/464 (6%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + + + + A + ++ + + Sbjct: 147 AVARVALPVEEVYAAVREVDRTILLGAVISILAAGLLAVWVAASVTRPVKELTAISRRIA 206 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + I + E + E + I + + E L ++LE DGI + Sbjct: 207 QGQMDTIQIDVSGKGEIEELAKAFRLMTERLRDSI--KAVSSERDYLSAVLERMGDGIFL 264 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++REG I N A ++F ++ F + + + + S ++ Sbjct: 265 LDREGSINLLNHASERIFKLEAGGVIGHSFVEAIRDHEINAV---FERAKSSGKQEMGFV 321 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K L II L S Y + + D+SE ++ + + D Sbjct: 322 ELTA----GKRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRD 362 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHE+RTP+T++ +E ++ + + I + + +V +L D+ Sbjct: 363 FVANISHELRTPITSLKLLTETLQEG--AASDPDVAAGFIDKIHLEVDKLAQLVTELSDL 420 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S IESG+ L+ +P + A+ A + A I + +P++ D V+Q+ Sbjct: 421 SAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPETLPQVRLDENRVEQV 480 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +N++ NAI FTP GG+I I T ++ +++ V D+G+G+ +L + + F ++ S+ Sbjct: 481 LVNLVHNAIKFTPKGGKIKIGVR-TQSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSR 539 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 G GTGLGL ++K +V A+ G + S KG PL Sbjct: 540 S--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581 Score = 42.7 bits (99), Expect = 0.29, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 17/244 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + ++ + A +IG + ++ I + +R + G Sbjct: 262 IFLLDREGSINLLNHASERIFKLEAGGVIGHSFVEAI------RDHEINAVFERAKS-SG 314 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 K + +E T + + A P+ S++ +V + + S Sbjct: 315 KQEMGFVELTAGKRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H + E + P +K+ + A L TE L E Sbjct: 369 HELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 I + + + P + + E + Sbjct: 425 SGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPETLPQVRLDENRVEQVLVNL 484 Query: 326 VDKC 329 V Sbjct: 485 VHNA 488 >gi|168700125|ref|ZP_02732402.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata obscuriglobus UQM 2246] Length = 1656 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 88/788 (11%), Positives = 218/788 (27%), Gaps = 81/788 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQN 141 WN DA G + + + + D + Sbjct: 860 VWNADAGGAVTYFNRRWTDYAALPVDQERRSDWTEALHPDDRDRVYRAWRDTVVQVAPGG 919 Query: 142 TWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 + + T Y A+P+ + + G + ++ Sbjct: 920 SDRFFQEFRLRHAATGAYRWFQSVAVPLRHPDGTVD--QWIGSMADIDDQKTAVERVRQS 977 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + + V + L + + + + + + Sbjct: 978 EAFRRSVFDNSPDCLKVFDLDGRLLEMNEAGCRLMELDDLEPIRGNLWAEMWPVANREVI 1037 Query: 261 LLTSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + + F L + L + + Sbjct: 1038 GEAVAAARDGQVGRFQGFCPTAKGTPKYWDVSVAPLPGADGKPDRLLGVSRDITEQRRAE 1097 Query: 317 EGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E + E + + G++F+ N + T +E G Sbjct: 1098 ERIRESEELFRQMAESIPQLAWMTDAEGHIFWYNQRWYDYTGTT----LEEMKGWGWQAV 1153 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 ++ + ++ +Q + Sbjct: 1154 QDPDELPRVVERWRAALAAGEHWE---DTFPLRGRDGKFRWFLSRARPIRDQVGNIIRWF 1210 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + R ++ + + ++ E + +G + NR + G +E Sbjct: 1211 GTNTDVSAQRELEQTLRASEERFRTLTETVPQIVWTAEPKGAVTFFNRRWTDYTGVELEA 1270 Query: 492 ILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 + L + + ++ + L + L Sbjct: 1271 GRGSVWGGDLLHPDDADRVRVGWQLAVARGGGGYSSEFRLRRADDGAYRWFLSNALPLRD 1330 Query: 551 SSC----YSLTMHDISEWKQ--------------------------------EKNKLSHA 574 + + T+ DI + K+ +++ Sbjct: 1331 QNGNVEEWVGTLTDIDDQKRQTETLEAMVRERTLALELANVALTEEIEVRQAAEDQARAV 1390 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 E+ + F SH+++ PL I F + + + L + + EY + + + Sbjct: 1391 AVELERSNGELEKFAYVASHDLQEPLRKIQAFGDRLVTKCRAELSD-KGKEYLDRMQVAA 1449 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 + +++DLL S++ + + F + L + VSE +S + + + ++ + Sbjct: 1450 ARMRRLIDDLLQFSRVTTQQRP--FRRLDLQKLVSEVVSDLDVRIGQANGAVQV---GPL 1504 Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------------ILRV 741 P + AD ++Q+ N+++NA+ F G ++ T +V + V Sbjct: 1505 PAVDADPTQMRQLFQNLIANAVKFQRPGVPPVVQITGELAAQVPLNNEGAEPISVCRITV 1564 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 RD G+G + ++ + F ++ + EGTG+GL + + +V+ + G +G Sbjct: 1565 RDNGIGFDDKYRDRIFEVFQRLHG--RDEYEGTGVGLAICRKIVERHGGAIEAHGISGEG 1622 Query: 802 TLIEIIFP 809 ++ P Sbjct: 1623 ATFVVVLP 1630 Score = 174 bits (440), Expect = 7e-41, Method: Composition-based stats. Identities = 53/538 (9%), Positives = 133/538 (24%), Gaps = 30/538 (5%) Query: 65 TNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123 ++ F + + V W A+GY + ++ G + +G Sbjct: 712 AVEAVRDSEARFRTLAQAVPHIIWVTRANGYHEYYNQRWYDYTGLTEEQSLGDGWSGPLH 771 Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFG 182 + + T + G Y ALP + R +G Sbjct: 772 PDDRARAAARWE--QSTATGAEYEIEYRFRGADGRYRWFLGRALPQRDADGRIV--RWYG 827 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMK 237 + +R ++++ L E + + + Sbjct: 828 TCTDIHEERMATEALRRNEERYRTLTEAVPHIVWNADAGGAVTYFNRRWTDYAALPVDQE 887 Query: 238 NKVSSLTEYYAHKDDVLKTEK-----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292 + + D + + E H + L Sbjct: 888 RRSDWTEALHPDDRDRVYRAWRDTVVQVAPGGSDRFFQEFRLRHAATGAYRWFQSVAVPL 947 Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPS 347 ++ +++ E + D P V+ G L N + Sbjct: 948 RHPDGTVDQWIGSMADIDDQKTAVERVRQSEAFRRSVFDNSPDCLKVFDLDGRLLEMNEA 1007 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 L + ++ I +++ I + D Sbjct: 1008 GCRLMELDDLEPIRGNLWAEM----WPVANREVIGEAVAAARDGQVGRFQG-FCPTAKGT 1062 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ P A+ P+ G+ + + R + ++ + E+ + Sbjct: 1063 PKYWDVSVAPLPGADGKPD--RLLGVSRDITEQRRAEERIRESEELFRQMAESIPQLAWM 1120 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 + EG I N+ G +E++ + + + + L+ Sbjct: 1121 TDAEGHIFWYNQRWYDYTGTTLEEMKGWGWQAVQDPDELPRVVERWRAALAAGEHWEDTF 1180 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 G + + R + + + T D+S ++ + L +++ + Sbjct: 1181 PLRGRDGKFRWFLSRARPIRDQVGNIIRWFGTNTDVSAQRELEQTLRASEERFRTLTE 1238 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 43/529 (8%), Positives = 124/529 (23%), Gaps = 29/529 (5%) Query: 86 TWNIDAHGYLKEISEELPKTI---GNYAF-----------KMIGMRLCDVSDILHIDPNN 131 W +D G ++ G + G ++ Sbjct: 594 VWTLDESGRWLDLQASAGAFTPDQGPHERVRVGETKIGRIAASGHPYLTDDVPNDPLTSD 653 Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 + ++ G + ++G V + + G + Sbjct: 654 PEWAGREGIRSFAGHPLV--VDGRVFGVLGVYSRTKLSEGLVTDLGPIAANLAQFIDRRK 711 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKE-KYDIFSQQSPPPHLRMKNKVS---SLTEYY 247 A+ + + +F L + V + Y + Q + + + S + Sbjct: 712 AVEAV-RDSEARFRTLAQAVPHIIWVTRANGYHEYYNQRWYDYTGLTEEQSLGDGWSGPL 770 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 D ++ T+ + + F + ++ + Sbjct: 771 HPDDRARAAARWEQSTATGAEYEIEYRFRGADGRYRWFLGRALPQRDADGRIVRWYGTCT 830 Query: 308 HPSLSAYFDEGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362 E E + P + + G + Y N + VD Sbjct: 831 DIHEERMATEALRRNEERYRTLTEAVPHIVWNADAGGAVTYFNRRWTD-YAALPVDQERR 889 Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 + L + A + ++ + + + Sbjct: 890 SDWTEALHPDDRDRVYRAWRDTVVQVAPGGSDRFFQEFRLRHAATGAYRWFQSVAVPLRH 949 Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482 G + D + ++ S+ + + D + + + +G +L N A Sbjct: 950 PDGTVDQWIGSMADIDDQKTAVERVRQSEAFRRSVFDNSPDCLKVFDLDGRLLEMNEAGC 1009 Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542 +L + +R + + + + K + Sbjct: 1010 RLMELDDLEPIRGNLWAEMWPVANREVIGEAVAAARDGQVGRFQGFCPTAKGTPKYWDVS 1069 Query: 543 IIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DI+E ++ + ++ ++++ + + Sbjct: 1070 VAPLPGADGKPDRLLGVSRDITEQRRAEERIRESEELFRQMAESIPQLA 1118 Score = 128 bits (323), Expect = 3e-27, Method: Composition-based stats. Identities = 54/545 (9%), Positives = 125/545 (22%), Gaps = 71/545 (13%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + + + +G + +G + + H LL+ + Sbjct: 447 VDGAGAIVRANRAELEMLGYDRTEFVGHKAEAFYEEPGAGRELH-ARLLRGERLTNHPAR 505 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +GT + ++A + N F R F + + Sbjct: 506 LRCKDGT--VRDVLISATALV-ENGSFVHARCF--TRDVTEQKRAADDLAERARAIALRA 560 Query: 209 EIKKGHS---------------------------SVEKEKYDIFSQQSPPPHLRMKNKVS 241 ++ G + E Q+ Sbjct: 561 DVAAGLAGAAETRSALQGCAETLARALGAALARVWTLDESGRWLDLQASAGAFTPDQGPH 620 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY------------------ 283 K + +P LT + + P D Sbjct: 621 ERVRVGETKIGRIAASGHPYLTDDVPNDPLTSDPEWAGREGIRSFAGHPLVVDGRVFGVL 680 Query: 284 ---TKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSH- 338 ++ + L + L+ + E P +V Sbjct: 681 GVYSRTKLSEGLVTDLGPIAANLAQFIDRRKAVEAVRDSEARFRTLAQAVPHIIWVTRAN 740 Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 G Y N + T + G L + + + Sbjct: 741 GYHEYYNQRWYDYTGLTEEQSL-GDGWSGPLHPDDRARAAARWEQST---ATGAEYEIEY 796 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 R + + + + G + + R+ + + ++ Sbjct: 797 RF---RGADGRYRWFLGRALPQRDADGRIVRWYGTCTDIHEERMATEALRRNEERYRTLT 853 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLT 514 EA + + G + NR + PV+ R +T L + + Sbjct: 854 EAVPHIVWNADAGGAVTYFNRRWTDYAALPVDQERRSDWTEALHPDDRDRVYRAWRDTVV 913 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570 ++ + ++ L + + L + +M DI + K + Sbjct: 914 QVAPGGSDRFFQEFRLRHAATGAYRWFQSVAVPLRHPDGTVDQWIGSMADIDDQKTAVER 973 Query: 571 LSHAK 575 + ++ Sbjct: 974 VRQSE 978 Score = 105 bits (262), Expect = 4e-20, Method: Composition-based stats. Identities = 48/542 (8%), Positives = 117/542 (21%), Gaps = 54/542 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---K 146 D + ++ + + G + +G + +V + Sbjct: 321 DPELRYERVNSFIARANGKPVSEHLGRTVTEVV-PDVPAERVERYRAVATGAAESYSDTV 379 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 PI G + A P+ G +VH +R ++ + Sbjct: 380 DVRHPITGALQAFHVT--AFPVRLPGGPTLGAG--VVVHEITEQRRAEQELRRSERNLTD 435 Query: 207 LHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTS 264 E G V+ + + ++ L + +++ E + L Sbjct: 436 FFENANVGLHWVDGAGAIVRANRAELEMLGYDRTEFVGHKAEAFYEEPGAGRELHARLLR 495 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 E + L N R+ D+ Sbjct: 496 GERLTNHPARLRCKDGTVRDVLISATALVENGSFVHARCFTRDVTEQKRAADDLAERARA 555 Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLL-------------LTKYKSVDDIEIAGGLSTLLD 371 + + + A T +S +++ Sbjct: 556 IALRADVAAGLAGAAETRSALQGCAETLARALGAALARVWTLDESGRWLDLQASAGAFTP 615 Query: 372 APKLSDNNAIKPVMLYR-----------------------SDRTCIAASARLHTIQWNRE 408 + + + R S H + + Sbjct: 616 DQGPHERVRVGETKIGRIAASGHPYLTDDVPNDPLTSDPEWAGREGIRSFAGHPLVVDGR 675 Query: 409 NSLAMTFIPFEKANQF--PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 + K ++ + P + +D R + + ++ +A I Sbjct: 676 VFGVLGVYSRTKLSEGLVTDLGPIAANLAQFIDRRKAVEAVRDSEARFRTLAQAVPHIIW 735 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 + G N+ G E L ++ L + + + + E Sbjct: 736 VTRANGYHEYYNQRWYDYTGLTEEQSLGDGWSGPLHPDDRARAAARWEQSTATGAE--YE 793 Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582 + + + + T DI E + L ++ + Sbjct: 794 IEYRFRGADGRYRWFLGRALPQRDADGRIVRWYGTCTDIHEERMATEALRRNEERYRTLT 853 Query: 583 SH 584 Sbjct: 854 EA 855 Score = 98.2 bits (243), Expect = 6e-18, Method: Composition-based stats. Identities = 34/318 (10%), Positives = 87/318 (27%), Gaps = 18/318 (5%) Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 ++ ++ E+ + + A DE ++ + + Sbjct: 264 ALGRQEELESEVVRRRVVEAALRQREADLVAAQARADEALARLDAFIENANVGIVFFDPE 323 Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398 N + + G + P + + + + S Sbjct: 324 LRYERVNSFIARANGKPVSEHL----GRTVTEVVPDVPAERVER--YRAVATGAAESYSD 377 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458 + A F + + E + R ++++ L Sbjct: 378 TVDVRHPITGALQAFHVTAFPVRLPGGPTLGAGVVVHEITEQRRAEQELRRSERNLTDFF 437 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 E + G+ ++ G I+ NRA ++ GY + + F P +L Sbjct: 438 ENANVGLHWVDGAGAIVRANRAELEMLGYDRTEFVGHKAEAFY--EEPGAGRELHARLLR 495 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAK 575 + + K+ + + I L + + D++E K+ + L Sbjct: 496 GE--RLTNHPARLRCKDGTVRDVLISATALVENGSFVHARCFTRDVTEQKRAADDL---- 549 Query: 576 KIAEKESSHKSDFLARVS 593 + + ++D A ++ Sbjct: 550 AERARAIALRADVAAGLA 567 >gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815] Length = 939 Score = 330 bits (846), Expect = 7e-88, Method: Composition-based stats. Identities = 117/703 (16%), Positives = 240/703 (34%), Gaps = 66/703 (9%) Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 + A IYS R + R+ + L + L + ++ + Sbjct: 27 VGATTIYSLAGSAHSIRQLAEERLTRLADAQELAQHTLTIERLALQLSRDETVEAVRQTH 86 Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLN 281 Q + + + D L +E + Sbjct: 87 GQVLDQLASFDRLVDHLAPASASNDPGVDVLALYRSSQRFRNIVNIEAQVRETALAVRAA 146 Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341 + +Q + E + + D V+ Sbjct: 147 PASARQ-PRVSLASLDEDLRRAADALAAAAREQSDSSTRGYRVAVENLAD---------- 195 Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401 YA+ + + +V + L ++ + + + A Sbjct: 196 -YADRTRTWIAGEVAVSLLLAWLIAREFLGRHVVARLRRVSHFLRHGDAGNEQAVPVHGG 254 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENM--------------------PQNGIEPEDVDTR 441 + ++ + + + G E + + Sbjct: 255 DEIADMARAVEDFLEDRRRRRLAEDALKELNAGLEARVAQRTAELTAALAGQAAEIAERQ 314 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + L SI+E D + + + N+A L GY E+++ + Sbjct: 315 HAEEAVRESEHFLNSIIENIPDMVFVKEAATLRFVRFNKAAEDLLGYRREELIGQSVHDL 374 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYS-LTM 558 + +L + + + + +L+ +++I I + + Sbjct: 375 FPADEADFFALKDRAVLESRQMIDVPEEPVHTRHGLRLVHTMKIPILDVRGEPQFLLGIS 434 Query: 559 HDISEWKQEKNKLSHAKKI------------------AEKESSHKSDFLARVSHEIRTPL 600 DI+E K + +L ++ A+ + KSDFLA +SHE+RTPL Sbjct: 435 RDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSHELRTPL 494 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+G+++++K + + R ++ I RSG +L +++D+LD++KIE+G+M L+F Sbjct: 495 NGILGYAQILKRDKN---LDRRQVDGLMVIQRSGEHLLTLIDDILDMAKIEAGRMELNFS 551 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719 V L + + +++ A EK + A ++P + D ++Q+ LN++SNAI FT Sbjct: 552 DVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRVDEIRLRQVLLNLISNAIRFT 611 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G + + + VRDTG+G+ LE +PF Q+ +++ GTGLGL Sbjct: 612 EQGS-VRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPFEQVSDARYRS-GGTGLGLA 669 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF------PLYDTSHP 816 +++ +V + ++ S G+ PL P Sbjct: 670 ISRELVRLMGSEIHVESHHGTGSAFSFELNVQLLAPLSTVVAP 712 Score = 53.5 bits (127), Expect = 2e-04, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 74/255 (29%), Gaps = 22/255 (8%) Query: 11 EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPC----HDSFEQSNFTDQNQESVSNTN 66 ED L + + + K+++ G E +++ + +E+V + Sbjct: 265 EDFLEDRRRRRLAEDALKELNAGLEARVAQRTAELTAALAGQAAEIAERQHAEEAVRESE 324 Query: 67 Y-----LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121 + +++ VF T+RF ++ +G ++IG + D+ Sbjct: 325 HFLNSIIENIPDMVFVKEAATLRFV-------RF---NKAAEDLLGYRREELIGQSVHDL 374 Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181 D + P+ + + +PI E G Sbjct: 375 FPADEADFFALKDRAVLESRQMIDVPEE-PVHTRHGLRLVHTMKIPILDVRGEPQFLLG- 432 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 I +R + + + ++ KE D +Q M +++ Sbjct: 433 -ISRDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSHELR 491 Query: 242 SLTEYYAHKDDVLKT 256 + +LK Sbjct: 492 TPLNGILGYAQILKR 506 >gi|329851899|ref|ZP_08266580.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328839748|gb|EGF89321.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 873 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 123/742 (16%), Positives = 263/742 (35%), Gaps = 42/742 (5%) Query: 105 TIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163 G ++ G+ L + + +H+ L + + + N+ VP+ Sbjct: 1 MAGKATHELTGVSLRRLLTRPSNFVMGSHVLPPLALTGSVHEVELDI-VGPDNINVPVTA 59 Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223 +A+ +N F R L K L + ++ + + V D Sbjct: 60 SAM-RRLKNGASVDMFSFMPAKGRRGFTQEFLLAKSLLDRRQAYLDLAEKLAKVGHWHVD 118 Query: 224 IFSQQS-----------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 + + QS P N ++ Y+ + L S+ + + Sbjct: 119 LKTTQSTWSPEVYAIHGCDPAGYQPNLDDGISFYHPDDRASVAGAIAEALESKATFSFRK 178 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDK 328 + +++ ++ + +E E ++ Sbjct: 179 RLIRRDTGDVRIVDSVGLGEFDHAGQAVAIFGVFKDVTDLVAAQVKLEESEAQYRLLAER 238 Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 ++ G Y +PS + Y+ + + + L + D Sbjct: 239 SNDIVALFDLEGTFQYLSPSIEEILGYRPDSFVGRS---TRDLIYAEDYDRTLAVFATYL 295 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-PQNGIEPEDVDTRINKRK 446 R R + ++ M P + + + + + +T + Sbjct: 296 RERDWKRPLRVR-YRVRHANGALRWMEANPRPIFDAAADRIIGFQDVVRDVTETVEALER 354 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ++ + + + +A + + NRA + FG E+++ + Sbjct: 355 IQASETRHRLLADHMPGMVAYWDNTLVCRFANRAYEEWFGRTAEEMIGLDMPSLMGPELF 414 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEW 564 + Y+ L+ +Q+ E+ + + + + + + + DI+ Sbjct: 415 ARNERYILGALA-GAQQSFERALTKANGATGYTWAQYLPDRDENGAVRGFYVLVTDITAL 473 Query: 565 KQEKNKLSHAKKIA-------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 K ++ L A E + K++FLA +SHEIRTPLT+IIGFS ++ + P Sbjct: 474 KTKELALEEANAALVVAREKAEVAAEAKANFLATMSHEIRTPLTSIIGFSGLMAD--LNP 531 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 G+ Y+ I +G+ +L ++N +LD +K+++G++ L ++ + + L+ + Sbjct: 532 EGSENAR-YSQRIYSAGHNLLTLINGILDHAKMDAGQLRLKPTACNVASIIDDVTGLLTV 590 Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTS 733 A K + +R A+++P +L D +QI N++ NAI FT G + + Sbjct: 591 QAKAKSLDLRVDVADDLPSAMLLDEIRFRQILQNLIGNAIKFTVKG-HVEVKAVPIASAE 649 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + + V DTG G++ + K F Q+ GTGLGL + + +V+ G Sbjct: 650 GATLRIAVSDTGPGISLEGQAQLFKKFSQVDRKAGETQTGTGLGLLICRQLVELMDGAIN 709 Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815 + ST GT + P+ + Sbjct: 710 VESTVGHGTSFIVDIPIKRDAE 731 Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 35/387 (9%), Positives = 92/387 (23%), Gaps = 23/387 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G + +S + + +G +G D+ D + R+ W Sbjct: 247 DLEGTFQYLSPSIEEILGYRPDSFVGRSTRDLIYAEDYDRTLAVFATYLRERDWKRPLRV 306 Query: 149 LWPIE-GTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 + + ++ PI+ GF+ +V + + + + Sbjct: 307 RYRVRHANGALRWMEANPRPIFDAAADRIIGFQ--DVVRDVTETVEALERIQASETRHRL 364 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 L + G + R ++ L ++ + +L + Sbjct: 365 LADHMPGMVAYWDNTLVCRFANRAYEEWFGRTAEEMIGLDMPSLMGPELFARNERYILGA 424 Query: 265 EESSLPEQEDFHTINLNQYTKKQY-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + E T + ++ + + + + Sbjct: 425 LAGAQQSFERALTKANGATGYTWAQYLPDRDENGAVRGFYVLVTDITALKTKELALEEAN 484 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + A +FL ++ + G S L+ + + Sbjct: 485 AAL-----VVAREKAEVAAEAKANFLATMSHEIRTPLTSIIGFSGLMADLNPEGSENARY 539 Query: 384 VM---------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L + A ++ + I + ++ Sbjct: 540 SQRIYSAGHNLLTLINGILDHAKMDAGQLRLKPTACNVASIIDDVTGLLTVQAKAKSLDL 599 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461 DV + + E+ + IL+ Sbjct: 600 RVDVADDLPSAMLLDEI-RFRQILQNL 625 >gi|319653067|ref|ZP_08007170.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2] gi|317395239|gb|EFV75974.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2] Length = 718 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 94/504 (18%), Positives = 194/504 (38%), Gaps = 37/504 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 D + +D+ I G + Y N F+ ++KY+ + + G + + Sbjct: 241 EASDTNLHDIQAALDESSIVAITDPKGVITYVNDKFVEISKYEEHELL----GKNHNILN 296 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 + + R + + N+ + Sbjct: 297 SGFHPPEFFQDLWKTIGSGEIWKGEIRNKA---KDGSFYWVDTTIVPFLNKKNKPYQYVS 353 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 I + + ++ + + I L+ +S IA + +G I + N ++ Y Sbjct: 354 IRTDISALKSAAASLKSSLKDVNDIKFALDQSSI-IAFTDEKGTITNVNEKFCEISQYSR 412 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 E+++ + ++ L + + + + K+ + I Sbjct: 413 EELIGQNHSILNSGLHSKEFFKNLWKTIGQG--EVWKGEIRNKAKDGSYYWVHTTIVPFL 470 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 ++ Y +DI+E K+ + L K+A A V+HEIR PLT + G Sbjct: 471 NANGKPYQYLSIRNDITERKKTEEVLHQQDKLA-----AVGQLAAGVAHEIRNPLTTMKG 525 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++E ++ + + EY + I + V +IV D + ++K ++ ++ E + Sbjct: 526 YTEFLQLEE----THEERQEYLSIILDEIDRVNNIVEDFMVLAKPKAAEL----EERDII 577 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + +S ++ A + + I + +I +I D +KQ+ LN + N I P GG I Sbjct: 578 PIIKNVVSFLEFEARNRNVKIGFEYQQDIIQIECDENRLKQVLLNFIKNGIEAMPDGGNI 637 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + N +V + ++DTGVG+ +L+ +PF + G GLGL ++ ++ Sbjct: 638 TVRAGII-NNQVQIAIKDTGVGIPQEKLKNIGEPFFTTKKN------GNGLGLMVSFKII 690 Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809 +++ GK +I S KGT I+ P Sbjct: 691 ESHNGKVFIESELNKGTTFNIVLP 714 Score = 49.6 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 26/257 (10%), Positives = 74/257 (28%), Gaps = 17/257 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYG 145 D G + ++++ + +++G ++ + + + W G Sbjct: 263 TDPKGVITYVNDKFVEISKYEEHELLGKNHNILNSGFHPPEFFQD--LWKTIGSGEIWKG 320 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G+ +V + +P ++ + ++ I A K K + Sbjct: 321 EIRNKAKDGSFYWVDTTI--VPFLNKKNKP--YQYVSIRTDISALKSAAASLKSSLKDVN 376 Query: 206 ----HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 L + + EK +++ + ++ + K L Sbjct: 377 DIKFALDQSSIIAFTDEKGTITNVNEKFCEISQYSREELIGQNHSILNSGLHSKEFFKNL 436 Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + + + + Y N + + ++YLS RN + +E Sbjct: 437 WKTIGQGEVWKGEIRNKAKDGSYYWVHTTIVPFLNANGKPYQYLSIRNDITERKKTEEVL 496 Query: 320 NLTPET--VDKCPIPFF 334 + + V + Sbjct: 497 HQQDKLAAVGQLAAGVA 513 >gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4] gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4] Length = 1125 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 124/732 (16%), Positives = 239/732 (32%), Gaps = 56/732 (7%) Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 L + P +G L + T +L + A + + N F+ R Sbjct: 114 APLILRPGVRLGSLCLADSQPRDFTPEDAAALRDLAEIVT-AQMRLRRDNLAFASERALR 172 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241 +H + + + +R + + + LR+ + Sbjct: 173 QIHESTIRAQGVEIERRASANSLLTMAEQIAQVGHWRLNFASGQPIYSESLLRIAGLDAA 232 Query: 242 -------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 L + D + + F + + Sbjct: 233 APTTRHPGLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTD 292 Query: 295 NSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348 + + + + A E D P+ + G Y N F Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 A + L ++ RL + Sbjct: 353 EDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQA--RDGS 404 Query: 409 -NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 ++ P A G + + + +E L LE G Sbjct: 405 YRWHKLSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFD 464 Query: 468 INREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 N I + +L+G P + +T + + + + + R Sbjct: 465 WNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRF 524 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK----- 576 E ++ L Y DI+E K + L A Sbjct: 525 IAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAA 579 Query: 577 --IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R +P I SG Sbjct: 580 TVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRD---HDPEDQRRLELIRVSG 636 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++ Sbjct: 637 ESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDL 696 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------EEVILRVRDT 744 P ++ D ++Q+ N+L+NA+ FTP+G ++++ + + E + + DT Sbjct: 697 PVSVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGGTAEALRFEISDT 755 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 756 GIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTF 815 Query: 805 EIIFPLYDTSHP 816 L + P Sbjct: 816 WFTLALPRATTP 827 >gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 628 Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats. Identities = 104/489 (21%), Positives = 190/489 (38%), Gaps = 45/489 (9%) Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 DIE L + S R R++ + Sbjct: 15 ADIEGKTIWEALPPETSSEVELPYRQAFAGISSRFEAPYGHRVYEVH------------V 62 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 N E I E + + ++ ++ + L ++ T + + + Sbjct: 63 LPVRNDDGEIFAGMTITQEITERKQSELALQDALQLLNLHIDTTPLAVVQWDCHLCVTRW 122 Query: 478 NRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + K+FG+ E+++ K F + + + + +LS Q ++ TK+ Sbjct: 123 SSTAEKIFGWRTEEVIGKYFQDLHMVYEEDMTAVAEASNRLLSGQESQIIQY-NRNYTKD 181 Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA----------------- 574 +++ + + + D++E Q + L + Sbjct: 182 SRVIYCEWYNSSITNEAGSVTSVLSLVLDVTERIQAEKALRQSELMVIEERAQALERERA 241 Query: 575 -KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 + E+ S K +FLA VSHE+R+PL I+G+S +++ ++ P + + I+R+ Sbjct: 242 ARIELERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESIERN 298 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++ DLLDIS+I G + L P L + A+ V+ AN K I I + + Sbjct: 299 AQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFD 358 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753 I + AD ++Q+ N+LSNA+ FTP GG++ I V +RV DTG G++ L Sbjct: 359 IGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETN-VQIRVTDTGKGISPEFL 417 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL-- 810 F Q + G GLGL + + +V+ + G + S +G + PL Sbjct: 418 PYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLPLLP 477 Query: 811 -YDTSHPHD 818 Y T P + Sbjct: 478 SYSTVTPEE 486 >gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus Nitrospira defluvii] Length = 619 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 98/644 (15%), Positives = 231/644 (35%), Gaps = 69/644 (10%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G+ ++ L + + + + + +R ++ Sbjct: 25 GWLVIRSVEQT----ELSRMAETLETSSGLAAMTLRPLFDQSGSTVPGSLLHATVRDLSQ 80 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + L +D + S + + ++ + + G + Sbjct: 81 QAHLRITVIRQDGTVVA------DSAVPTEGLAHVENHLSRPEVAQALRSGRGMDIRASQ 134 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 L + + P P+ + + + Sbjct: 135 TTGERTYYVARLLSASTPAQPSIPVIRLGLPLTSI---DERVRHIQQDLATAFGAAFLLA 191 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + ++ +S L P A + + + + Sbjct: 192 MTLSLWVSRNLTKPLSEMAAAARQLA--------------------GGTPGVRLVVSST- 230 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 ++ + ++T+I +++ + QL ++L A +G+ +++ G ++ N Sbjct: 231 --DEVGLLAQTLNEMTDQLETKI--KEVSDDRAQLLAMLIAMVEGVMVLDYRGTVVQVNP 286 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 A+ ++F + + + + + + + + + S + + + + L Sbjct: 287 ALERMFSLELTESRGRHYAELIRHEGLTALVSSVLQTRSGQGGE------ITLSPSGRCL 340 Query: 540 SLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + I +C HDI+E ++ + + DF+A VSHE+R Sbjct: 341 RVEASIAGGSREQEACAVFVFHDITELRRLE--------------KIRKDFVANVSHELR 386 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPLT+I G+ E + + G + I R N + I++DLL +S+IESG++ Sbjct: 387 TPLTSIKGYVEALLDG--GKDEPATATAFLEIIMRQSNRLNLILDDLLQLSQIESGQVLF 444 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 EPV L + +++++ A++K I S + + D + Q+ +N+L NA+ Sbjct: 445 RREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWVVEGDEERLVQVFINLLENAVK 504 Query: 718 FTPSGGQIIISTT-------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +TP G+I ++ T + + V D+G+G+ + + + F ++ ++ Sbjct: 505 YTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIPEADRPRVFERFYRVDKARSRE 564 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 GTGLGL + K +V+A+ G+ ++ +G+ + P+ S Sbjct: 565 LGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLPVAQDS 608 Score = 42.7 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 30/357 (8%), Positives = 88/357 (24%), Gaps = 17/357 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + +++ L + + G ++ + + +L+ + + G Sbjct: 275 LDYRGTVVQVNPALERMFSLELTESRGRHYAELIRHEGLTA--LVSSVLQTR-SGQGGEI 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G L V +A +RE F + H +RL+K Sbjct: 332 TLSPSGRCLRVEASIAG-----GSREQEACAVF-VFHDITE-------LRRLEKIRKDFV 378 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ E + + L LL + Sbjct: 379 ANVSHELRTPLTSIKGYVEALLDGGKDEPATATAFLEIIMRQSNRLNLILDDLLQLSQIE 438 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + ++ ++ + + + + E L ++ Sbjct: 439 SGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWVVEGDEERLVQVFINL 498 Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + G + A + + IEI S + + + Sbjct: 499 LENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIPEADRPRVFERFYRVD 558 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 ++ + + I + + + + + + + + Sbjct: 559 KARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLPVAQDSSTAVSTE 615 >gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora sp. 8437] Length = 585 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 104/586 (17%), Positives = 221/586 (37%), Gaps = 44/586 (7%) Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 + ++ E + H+++ + L Sbjct: 33 ASTIDSLTERLEKEGRLLAEAVNREELWKKPALLQQQADRFGHSLDARVTLIDKKGEVLG 92 Query: 294 NNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSHGN--------LFYA 344 ++++ + + HP+ A + + + + F+ G + Sbjct: 93 DSARLPRGTENMKKHPAVARALSPDSKGKAGSIREDARLDVFLPVVGGKEREKVLGVVRL 152 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + + + S + +AGGL + + + + + T +A + + Sbjct: 153 SMELERIDQRLSQVWVSLAGGLLFSFALASMISSRVARNITRPIEEMTRVAVDMARNKLH 212 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 N+ I R + +L ++E G Sbjct: 213 RR-----------IPVNNRDEIGRLATAINRMAAGLRYQLETIRKSERRLTGVIETMDSG 261 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + +++ +G I N+A + F +L K + +N + + + R Sbjct: 262 LIMVDSKGKITLANQAFHRFFNLKPRQLLHKSLPEGAIFHD---LNRLVRKCMESGER-- 316 Query: 525 LEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 + EE+++ R+ + + +H+I+ ++ + Sbjct: 317 VRDEIHLYFPEERIMEARLTPIWEERGETGVMAVIHEITAIRRLE--------------K 362 Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643 +++F+A VSHE++TP+T++ GF+E + + E+ I + ++ D Sbjct: 363 MRTEFVANVSHELKTPVTSLRGFAETLLDG--AAEDPDMRKEFLEIIQAESLRLERLIAD 420 Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703 LLD+SKIES M L + + + E + V+ ++++ R P + D Sbjct: 421 LLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFP-VQVDPDR 479 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763 QI LN+LSNA+ +TP+GG++I+S + +RV DTG+G+ +L + + F ++ Sbjct: 480 FSQILLNLLSNAMTYTPAGGEVILSAGRGETDWW-IRVADTGIGIPGEDLPRIFERFYRV 538 Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ GTGLGL + K +V+A+ G+ + S KGT I + FP Sbjct: 539 DKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFP 584 >gi|327482207|gb|AEA85517.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri DSM 4166] Length = 1388 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 122/738 (16%), Positives = 247/738 (33%), Gaps = 72/738 (9%) Query: 89 IDAHGYLKEISEE---LPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWY 144 ++ + +S+ + +G + L + L ++ + + Sbjct: 568 VNQEAEIVHMSDRAGNFLRYVGGEPS----LNLTTLVHPQLRLELRTALYQAAHTGKSVE 623 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G + YV + +V R Sbjct: 624 ARRVRLERDGRSYYVNM---------------------VVRPFRD--------------- 647 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263 +E + V ++ + S K+ V L H + L+ T Sbjct: 648 ---NEAGSDYMLVLFDEVEACMDSSTLEDPDTKDSVLTQLEAELQHTKERLQITMEHSET 704 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENL 321 S E E+ IN + + T + + E L+ N+ S + + Sbjct: 705 STEELRASNEELQAINEELRSATEELETSKEELQSINEELTTVNYELKSKVDETSKINDD 764 Query: 322 TPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + I FV + + P + D ++ LD P L+ + A Sbjct: 765 LQNLISSTDIATVFVDRKMRIKWFTPRARDIFNVIGNDAGRSLFDITHRLDYPLLAKDAA 824 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L+ +R +RE + D Sbjct: 825 EAFEELHLVEREV-----------RDREGQHWYLARFLPYRTLDDRIEGAVLTFIDITDR 873 Query: 441 RINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R + ++ L + ++T I ++ +G+I + N + GY ++L + + Sbjct: 874 RRAEEELRAGEAHLKLLAQSTKGYAIITLDCDGLITTWNCGAELILGYRETEVLGQTVDI 933 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556 + +L Q + + ++ L ++ L + + Sbjct: 934 IYTEQDRQAGVPEAERQRALQHGQATD-ERWHARRDGSRCFLSGLLNPLVDGTGKVIGFA 992 Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D++E +Q ++ + + + + K F A +SHE++ PL I ++ + + Sbjct: 993 KIARDLTEERQRSSEQQNELESVQAANLQKDQFFAVLSHELKHPLNLIQLNTD-LVARSQ 1051 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 NP + I + I++DL+D+S+I +GK+ LHF + + + ++ Sbjct: 1052 AVKNNPSLHKATQSIQNAVRSQSRIIDDLMDVSRIRTGKLKLHFATLRYQDVLRGIEAVF 1111 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + I + + I AD + QI N+L+NA FT G +I + + Sbjct: 1112 APLAQSENISFESFKPDAPIYIQADPTRLDQIIWNLLNNAWKFTKGGQRICMQLE-REGD 1170 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L V DTG G++ L K FGQ Q G G+GL L K +V+A+ G+ Sbjct: 1171 QARLDVIDTGEGISADFLPKVFDMFGQAEMQHAQRAKHGLGIGLALVKQLVEAHNGRIEA 1230 Query: 795 FST-PAKGTLIEIIFPLY 811 +S +G + P++ Sbjct: 1231 YSEGIGRGARFSVWLPVH 1248 >gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001] Length = 941 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 123/652 (18%), Positives = 242/652 (37%), Gaps = 53/652 (8%) Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 +V F L + ++ E D + R + Sbjct: 79 VDVVRETHRHVIEELAT------FDRLVDRLAAATTSEGVSVDALALHRSSQRFRNTVNI 132 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 + A + + S S E + + +Q + +++ Sbjct: 133 EAQVRETALRAGSMPGATPEARGSPASGSLEDDLRRQADALAAAARQQADYFTRDYRQAV 192 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVD 358 + L+ + GE + F+ H G L + FL S Sbjct: 193 QDLADNADRTRKWVT--GEVAVSLLLAWLIAHAFLGRHVVGRLRRVS-HFLRHGDVDSAQ 249 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 G + D + + ++++ +A L Sbjct: 250 AGVPVRGGDEIADMARAVEQFLEDRRQRRQAEQALKELNAELEA---------------R 294 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILST 477 + G+ E V+ + + L SI+E D I + + + Sbjct: 295 VTQRTAELSTALAGLTAEIVERQHAEEAARASEHFLDSIIENIPDTIFVKDAATLRFVRF 354 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N+A +L GY E+++ K + ++L + + + + Sbjct: 355 NKAGEQLLGYRREELIGKSVHDLFPPSEAEFYALKDRDVLKSQQLVDVPDEPVHTRYGVR 414 Query: 538 LL-SLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKI------------------ 577 LL +++I I + + DI+E ++ +++L ++ Sbjct: 415 LLHTMKIPIVDVRGEPQFLLGISRDITEQRRAEDELRRYREHLEDMIRERTAELAVAKEH 474 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 A+ + KSDFLA +SHE+RTPL I+G++++++ + R + I RSG + Sbjct: 475 ADAANQAKSDFLAHMSHELRTPLNGILGYAQILRRDKN---LEQRQADGIAVIQRSGEHL 531 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 L I+ND+LD++KIE+GK++L+ V L+ + ++L A EK + A +P Sbjct: 532 LAIINDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAA 591 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + D + ++Q+ LN+LSNAI FT +G + + T + V+DTG+G+ E Sbjct: 592 VRVDEKRLRQVLLNLLSNAIKFTETGS-VCLRVDWTPPTRLRFEVQDTGIGIEEAHRETI 650 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +PF Q+ +++ GTGLGL +++ +V G+ ++ S G++ Sbjct: 651 FRPFEQVSDARHRV-GGTGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL 701 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 3/166 (1%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 A ++ + +G ++IG + D+ + + + Sbjct: 347 ATLRFVRFNKAGEQLLGYRREELIGKSVHDLFPPSEAEFYALKDRDVLKSQQLVDVPDEP 406 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + + +PI E G I +R + + Sbjct: 407 VHTRYGVRLLHTMK-IPIVDVRGEPQFLLG--ISRDITEQRRAEDELRRYREHLEDMIRE 463 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + +V KE D +Q M +++ + +L+ Sbjct: 464 RTAELAVAKEHADAANQAKSDFLAHMSHELRTPLNGILGYAQILRR 509 >gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans 743B] Length = 949 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 180/398 (45%), Gaps = 13/398 (3%) Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGIAIINREGIIL 475 P + + + + R+ + K ++ +IL + I ++ Sbjct: 156 PITWEAERIKTLKYISRAFSYLKERLIREKAYESILDGQAILLDNAQSQIWALSNVTSYA 215 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 + N +K FG ++ + F + +T + ++ ++ + E E Sbjct: 216 TVNETHAKFFGKNKVELEYQDFYDVFDIDTANALSQLSWDLFEKNELAEKELEINNYKGE 275 Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 ++LL+++ I ++ + T DI++ + + +L AK+ AE + KS FLA +S Sbjct: 276 KRLLNVKGIPQRDTIGNIKYIICTAVDITKQRSAEAQLYKAKEEAEAANIAKSKFLANMS 335 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 EIRTP+ I GF E+++ E+ + ++L I+ND+LD+SKIE+ Sbjct: 336 REIRTPMNGIFGFLELLELTNLSS----EQKEFIREAKSASEVLLHIINDILDLSKIEAR 391 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712 K+ + +L +A+ + +SL+ A EK + + ++P ++ D ++QI N++ Sbjct: 392 KLIMENISFNLRDAIEDTVSLLAPKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLI 451 Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 NA+ FT G + IS + + V V DTG+G+ ++ K + F Q S Sbjct: 452 YNAVKFTEKG-YVSISMDYLEKDHEIALVNFEVEDTGIGIATEDIPKVFEAFNQADASTT 510 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 + GTGLGLP++ ++ G + S +G+ + Sbjct: 511 RKYGGTGLGLPISYELIKMMGGDIRVESKLGEGSTFKF 548 >gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus YK9] Length = 1091 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 112/408 (27%), Positives = 181/408 (44%), Gaps = 24/408 (5%) Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 ++ T P + G + + + +RKM + S+ E D I Sbjct: 277 GGTNVWATLEPII---EDGVVTAIIGGVVDISERKAAERKMIESEERYRSLAENPQDCIL 333 Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526 +++EG IL N K+ G E + S N +L E + + E Sbjct: 334 ELDQEGRILFANSYFCKIAGIGPELAADQHLFGLKLIVNESQWNKHLNETATSGKKSRFE 393 Query: 527 KITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584 + ++L I + S +MH+I+E KQ + + Sbjct: 394 TSIVLMDGRVSEYYVTLSEIKGPMESSKSMICSMHEITELKQADQE-----------NRA 442 Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 KS FLARVSHEIRTPL IIG ++++++ +YA+ I S +L+L I+ D+ Sbjct: 443 KSRFLARVSHEIRTPLNGIIGMTQLMQHTEL----TDTQQDYAHKILSSSHLLLGIITDI 498 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703 LD+SKIE+GK+N+ +DE + E S V + K+I + +P ++ D Sbjct: 499 LDLSKIEAGKLNMEQLEFQIDELLYELTSTVGVLKGIKQIEVILESEAGLPDKVIGDPLR 558 Query: 704 VKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPF 760 +KQI +N+ SNAI FT G + + N + VRDTG+GMT +++ +PF Sbjct: 559 LKQILMNLCSNAIKFTEHGHVLVRVERVIEMNGIVRLRFTVRDTGIGMTEDQIDMLYEPF 618 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 Q + + GTGLGLP+ K +V G+ + S+P G+ Sbjct: 619 WQAEYASASKLAGTGLGLPIVKELVQLLGGELQVESSPGIGSCFCFEL 666 >gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271] Length = 616 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 88/455 (19%), Positives = 183/455 (40%), Gaps = 33/455 (7%) Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFE 419 E + ++ + + L S + R ++ + + P + Sbjct: 176 EQTQSVMSVFIQSAVIAIVGSFILALVLSQGLTMPIENMRQQALRISEG----IYNYPAK 231 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + V + ++ +E E +L IL +DG+ +R G +L N Sbjct: 232 IFGNDELGELAKTLNELSVKVKDSQELIESERQRLDGILRYMTDGVIATDRRGNVLLVNE 291 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 +L G + + L + L + + + E Sbjct: 292 RALQLLGIDQQSAIGISIIRLLRLKDQYTLTDLLGDDREILMDWVDHGEYSILKGE---- 347 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 +I ++ F + + D++E ++ + + + DF++ VSHE+RTP Sbjct: 348 -FSVIRRETGFVTGVVCVLTDVTEQEKTEQE--------------RRDFVSNVSHELRTP 392 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 LT+I ++E ++ G + ++ N I + ++ ++ +LLD+SKI G+ L+ Sbjct: 393 LTSIKSYTEALRE---GAWQDEVIAPQFLNVIQLETDRMMRMIGNLLDLSKIHEGQYKLN 449 Query: 659 FEPVSLDEAVSEAISLVQLYANE----KRILIRTSFANNIPRILADLRSVKQIALNILSN 714 E + VS + + + K+ ++ F + + D V Q+ NIL+N Sbjct: 450 LEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSREIYLEIDQDRVTQVIDNILNN 509 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI ++P GG I++ S+ V L ++D G+G+ ++ + F ++ ++ GT Sbjct: 510 AIKYSPDGGVIVVKIE-DSHSHVHLSIKDQGLGIPQKDIPHLFQRFYRVDKARSREQGGT 568 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GLGL ++K +++ + GK + S KG+ P Sbjct: 569 GLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603 >gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1215 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 109/628 (17%), Positives = 219/628 (34%), Gaps = 51/628 (8%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEY 246 D + + + L+ + + +E + + + +V L Sbjct: 612 DSPDSATVTLVIRQLSDRLNRFRSHALVMFREPEPLEAVVYAGDDVSSTVSQRVIELERE 671 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + L+ L TS E E+ N + + ++ Sbjct: 672 LQMYQEKLQVTVEELETSNEELQATNEEIVAANEELQSTNEELHSVNEELLTINAEYQLN 731 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 D L + F+ + P+ +D + Sbjct: 732 IQQLTELTNDLDNFLASTEIGTL----FLERELKVKRFTPALTKEFHLLDIDVGRPITHI 787 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 S L+ ++ D+ ++ I + W A+ +P+ Q Sbjct: 788 SHRLEYDEMIDDAKS-----VLANGEPIEREVHSKSGAW-----YAVRVLPYHTPEQA-- 835 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + ++ +L +E + + I + EG I N G Sbjct: 836 VKGVVFTFVDITKIKKMNEELR----KLSYAVEQSPSIVVITDTEGRIEYVNPKFCACTG 891 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 VE+ L + E ++ + L R T K+ L ++ I Sbjct: 892 SSVEEALGRHLRDLNEWAEQNLSFDDVWSNLQAGERWTG--EVPSRRKDGTLYWEQLSIV 949 Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + Y D++E++ + L + S + A ++HEIR PLTA Sbjct: 950 PILDETGRIIHYLKVAEDVTEFRYTEELL-----RKSEMLSAVGELAAGIAHEIRNPLTA 1004 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 + GF+++I + Y + + + IVN+LL +SK ++ +H + Sbjct: 1005 LKGFTKLILSGSHSDS-------YLEIMRGELDRIETIVNELLVLSKPQA----VHIQRR 1053 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + + + + L++ A + I + IL +KQ+ +N+L NAI P+G Sbjct: 1054 NFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVENQLKQVFINLLKNAIEAMPNG 1113 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 G I ++ + V++RVRD GVG+ +++K +PF + +GTGLGL ++ Sbjct: 1114 GTIEVTVE-RDGDHVVIRVRDEGVGIPQDKMKKLGEPFYTTKD------KGTGLGLMVSF 1166 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +V+ + G S +GT + + PL Sbjct: 1167 KIVEQHGGIIRYESKEGEGTTVTVRLPL 1194 Score = 75.1 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 22/260 (8%), Positives = 65/260 (25%), Gaps = 11/260 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146 D G ++ ++ + G+ + +G L D+ ++ ++ + L+ W G+ Sbjct: 873 TDTEGRIEYVNPKFCACTGSSVEEALGRHLRDLNEWAEQNLSFDD-VWSNLQAGERWTGE 931 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +GT L+ +PI + + L ++ + + Sbjct: 932 VPSRRKDGTLY--WEQLSIVPILDETGRIIHYLK--VAEDVTEFRYTEELLRKSEMLSAV 987 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + + + + E L + Sbjct: 988 GELAAGIAHEIRNPLTALKGFTKLILSGSHSDSYLEIMRGELDRIETIVNELLVLSKPQA 1047 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + + + + NL + Sbjct: 1048 VHIQRRNFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVENQLKQVFINLLKNAI 1107 Query: 327 DKCPIP----FFVYSHGNLF 342 + P V G+ Sbjct: 1108 EAMPNGGTIEVTVERDGDHV 1127 >gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC 19624] gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC 19624] Length = 1320 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 110/657 (16%), Positives = 243/657 (36%), Gaps = 38/657 (5%) Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK------EKYDIFSQQSPPPHLR 235 G++ R + D + +R + + + V + ++ S P + Sbjct: 120 GMLTQARENVDALLVHQRAARGDAEVRRAVTSLVEVPDNLEPGIAEVEMLVSVSDPLLFQ 179 Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295 T + + + + + E H + + ++ ++ Sbjct: 180 WTAIARLATALHDYAGQMASVFTAAFVGNRPLLPQEMARIHYLRGAIESLRRELSLQRDR 239 Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLT 352 + + ++ + + + Y + A+ L Sbjct: 240 VMDQGGVEAESFQTAVRKVDELFMQEGMNLLRELETTGRTSGNYGMNAVTLASEYGPRLD 299 Query: 353 KYKSV------------DDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + D ++ LL + + + R I Sbjct: 300 AIAELGNIAIQGVHGRIDALDARNRRELLLTVVLAAFALLLLLGMYVLMRMRLSIPLDQV 359 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSIL 458 ++ + ++ + + G E R+ +++++ + +IL Sbjct: 360 TQALEQIARGDQRVHLPRARWRDEIGQVLGALGSLQEATQARLAAEQEIKNAKDEQDAIL 419 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEIL 517 A GI ++ + ++ + ++F +L ++ + + L L Sbjct: 420 NAADIGIVLL-KNRTVVRCSAGFERMFRVEPGSMLGHATREWYVNEEDYREVGEVLYAEL 478 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574 + D + + ++ + I + DI+E K+ + +L A Sbjct: 479 AEDRQNR--RELTLRRRDGTHFEAVLRGRAIDPNDLGRGSVWVIADITERKRMEGELRVA 536 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 + A++ + KSDFLA +SHEIRTP+ AIIG S ++ + R +Y I ++G Sbjct: 537 RDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTEL----SQRQHDYLRKIQQAG 592 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD+SKIE+GK+ + L++A+S +L+ A+ K + + A ++ Sbjct: 593 QHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEKAHAKGLELIFDIAPDV 652 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTN 750 P+ ++ D + QI +N +NA+ FT G + I ++ +V+L V DTG+G++ Sbjct: 653 PQRLVGDSLRLGQILINYANNAVKFTERGEVTVQIRVRERTDHDVLLYCAVHDTGIGLSV 712 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + ++ + F Q NS GTGLGL ++ + + G + S +G+ Sbjct: 713 EQQKRLFQSFQQADNSTTREYGGTGLGLSISLELAERMGGTVGVSSQLGRGSTFWFT 769 >gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase [Dehalococcoides sp. BAV1] Length = 581 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 96/464 (20%), Positives = 187/464 (40%), Gaps = 29/464 (6%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + + + + A + ++ + + Sbjct: 147 AVARVALPVEEVYAAVREVDRTILLGAVISILAAGLLAVWVAASVTRPVKELTAISRRIA 206 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + I + E + E + I + + E L ++LE DGI + Sbjct: 207 QGQMDTIQIDVSGKGEMEELAKAFRLMTERLRDSI--KAVSSERDHLSAVLERMGDGIFL 264 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++REG I N A ++F ++ F + + + + S ++ Sbjct: 265 LDREGSINLLNHASERIFKLEAGGVIGHSFVEAIRDHEINAV---FERAKSSGKQEMGFV 321 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K L II L S Y + + D+SE ++ + + D Sbjct: 322 ELTA----GKRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRD 362 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHE+RTP+T++ +E ++ + + I + + +V +L D+ Sbjct: 363 FVANISHELRTPITSLKLLTETLQEG--AASDPDVAAGFIDKIHLEVDKLAQLVTELSDL 420 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S IESG+ L+ +P + A+ A + A I++ +P++ D V+Q+ Sbjct: 421 SAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPQVRLDENRVEQV 480 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +N++ NAI FTP GG+I I T ++ +++ V D+G+G+ +L + + F ++ S+ Sbjct: 481 LVNLVHNAIKFTPKGGKIKIGVR-TQSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSR 539 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 G GTGLGL ++K +V A+ G + S KG PL Sbjct: 540 S--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581 Score = 42.7 bits (99), Expect = 0.27, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 63/244 (25%), Gaps = 17/244 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + ++ + A +IG + ++ I + +R + G Sbjct: 262 IFLLDREGSINLLNHASERIFKLEAGGVIGHSFVEAI------RDHEINAVFERAKS-SG 314 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 K + +E T + + A P+ S++ +V + + S Sbjct: 315 KQEMGFVELTAGKRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H + E + P +K+ + A L TE L E Sbjct: 369 HELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 I + + P + + E + Sbjct: 425 SGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPQVRLDENRVEQVLVNL 484 Query: 326 VDKC 329 V Sbjct: 485 VHNA 488 >gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245] Length = 887 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 165/361 (45%), Gaps = 21/361 (5%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 + + DG+ +I++E I N A + DI KP L Q Sbjct: 248 VYDKMPDGVFVIDQEERITDCNNAALNILEITKNDI-GKPAAKILRQWPELYGLIIEARE 306 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHA 574 + + + + + I+ + + + +I+ KQ + L Sbjct: 307 IKHADLKKQKLDLV------SWFDIDILALPDKNGCLTGRIIVLRNITSRKQIEYDLIAT 360 Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 ++ AE + KSDF+A +SHEIRTPL +IGFS ++ + Y N ++ S Sbjct: 361 REKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLLMKTTL----DDVQFHYINTVNNSA 416 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L ++ND+LD+SKIE+GK+ L+ E +SL E E I + A+ K + + +++ Sbjct: 417 KQLLGLINDILDLSKIEAGKLELYNEMISLQELAEEVIDMTAFTAHSKNLELLLDIPSSL 476 Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVG 747 P LAD +KQI +N+L NA+ FT SGG+I + ++ I VRDTG+G Sbjct: 477 PESALADPVCLKQILINLLGNAVKFT-SGGEIELKIETVPSDNDPDYLVFIFSVRDTGIG 535 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ +K + F Q S + GTGLGL ++ ++ + S+P +G+ Sbjct: 536 ISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQLESSPGQGSRFFFS 595 Query: 808 F 808 Sbjct: 596 L 596 >gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000] Length = 637 Score = 330 bits (845), Expect = 8e-88, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 183/410 (44%), Gaps = 13/410 (3%) Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGIAII 468 + + E + + ++ EV +L +L + +D +A+ Sbjct: 91 AYWLAGQRLRLETMHAELKASLDAKQDAIEDAEVALAKYREVDRLYRLLGDNLTDHVALW 150 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 + G L ++ ++ ++ GY +E+ + P + + + + + + + Sbjct: 151 SPLGERLYSSPSIERITGYTLEEFMALPPAALVGEADFRRVQGIIRSLEPGGEPVSADYE 210 Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSD 587 +L K+ + + L S L DI+E K+ + ++ A ++AE S+ KSD Sbjct: 211 SLC--KDGSRIWVESTYSLLGDGSGILLVTSRDITERKRLELDIAKALQMAEAASAAKSD 268 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA ++HE+RTPLTAIIGF+EV++ R R +I + N +L +VND+LD Sbjct: 269 FLANMTHELRTPLTAIIGFAEVLRRSRNLNKTAARQ---VGHILDASNTLLSVVNDVLDF 325 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S++E+G + L P S LV A K + + + + D + Q+ Sbjct: 326 SRLEAGGLELDPAPFDPAAMASSCAGLVAERAEAKGLAVEVRAPRGLKPMNLDGPRLSQV 385 Query: 708 ALNILSNAIHFTPSGGQIIISTTHT-SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764 LN LSNA+ FT G I ++ T ++ +LR V DTG+G+ E F Q Sbjct: 386 LLNFLSNAVKFTSHGA-ITVALRQTIDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQAD 444 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYD 812 + R GTGLGL +++ +++ G+ + S +G+ PL D Sbjct: 445 AAVSRRFGGTGLGLAISRRIIERMDGRIGVDSVEGQGSTFWFEVRGPLAD 494 >gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 746 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 130/608 (21%), Positives = 237/608 (38%), Gaps = 30/608 (4%) Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279 + + Q+ R+ + + + + + LLT +E LP + + Sbjct: 10 AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 69 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337 +S E L L G Sbjct: 70 ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 129 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L ++ L STLL A + +ML + Sbjct: 130 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 183 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 AR+H +Q N + + + + + +R + +L Sbjct: 184 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 243 Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ + F+VF Sbjct: 244 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 301 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 + + + + K+ ++I S +S DIS+ + + Sbjct: 302 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 361 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I Sbjct: 362 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 416 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688 R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A + I ++ Sbjct: 417 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 476 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V DTG G+ Sbjct: 477 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGI 534 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + KPF ++ EGTGLGL L+K+M++ G + +T +G + Sbjct: 535 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLAL 592 Query: 809 PLYDTSHP 816 P P Sbjct: 593 PFVAVHAP 600 Score = 51.2 bits (121), Expect = 8e-04, Method: Composition-based stats. Identities = 24/265 (9%), Positives = 69/265 (26%), Gaps = 20/265 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 254 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 312 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 313 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 370 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 371 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 428 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + + L H Sbjct: 429 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELKELPHLPDE--LGV 484 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339 + + L ++ Sbjct: 485 IADRQRLVQVLLNLLSNAIKYNRPD 509 >gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 775 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 130/608 (21%), Positives = 236/608 (38%), Gaps = 30/608 (4%) Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279 + + Q+ R+ + + + + + LLT +E LP + + Sbjct: 39 AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLIDA 98 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337 +S E L L G Sbjct: 99 ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHETVAAILVENKYVLDQL 158 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 + L ++ L STLL A + +ML + Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 AR+H +Q N + + + + + +R + +L Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272 Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I+E D GI ++R G + + N ++ GY ++I+ + F+VF Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570 + + + + K+ ++I S +S DIS+ + + Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 L A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688 R+G +L ++N++LDI++IE+G ++L EPVSL + E + LV A + I + Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELEELP 505 Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748 + + ++AD + + Q+ LN+LSNAI + GQ+ I ++ V + V DTG G+ Sbjct: 506 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-RVTVSVVDTGYGI 563 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 L + KPF ++ EGTGLGL L+K+M++ G + +T +G + Sbjct: 564 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEGCRFTLAL 621 Query: 809 PLYDTSHP 816 P P Sbjct: 622 PFVAVHAP 629 Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 27/280 (9%), Positives = 73/280 (26%), Gaps = 22/280 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y N E GF R + + + Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 + + + SL + + L + + + E L H Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELEELPHLPDE--LGV 513 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLT 352 + + L ++ + S +T Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVT 553 >gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium phaeobacteroides DSM 266] Length = 590 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 108/572 (18%), Positives = 213/572 (37%), Gaps = 40/572 (6%) Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 V+ + L SEE +++ + ++ RNH Sbjct: 51 SRQVIDSRSPIWLVSEEPDHWTDNVGRVLDVRVTLIGKDGRVAGDSYLSLSALAKVRNHL 110 Query: 310 SLSAYFDEGEN------LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363 + ETV + + V G YA F + E Sbjct: 111 HRPEVKEALSTGYGEDIRYSETVREQMLYMAVPVGGEAPYAVLRFAKPLYDIGELESEAR 170 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 GL L L L + A + + S + ++ + Sbjct: 171 KGLEGGLLWALLFSLLIGGLTALLLARPLRRIVDAAEKCVH--GDYSGTIAVNRDDEIGK 228 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E + + ++L + I + N +G I+ N A S+ Sbjct: 229 MARAFNFMSAEINTMQRK---------EEWYRAVLSGIREAIIVTNADGEIILVNPAASR 279 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR- 542 +F + P + +++ + E+++L + K ++ + + Sbjct: 280 MFRIDGAMLKSHPVKQL----ADQKLRELFSDVHTKRTTLQKEEVSLVTVKGKRTMQISS 335 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + +K+ ++DI++ + + + DF++ VSHE+RTPLT+ Sbjct: 336 MPVKRDGQFDGTVFVLNDITKLRNLE--------------RIRRDFVSSVSHELRTPLTS 381 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 I G++E + + + I + + +VND+LD+S+IESGK++ F P Sbjct: 382 IKGYTETLLDGAMH--DPEHAAAFLRIILQESEQLTALVNDVLDLSRIESGKIDYRFAPT 439 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 L + ++ LV +K+I + F +P + AD ++ N+L NA+ + Sbjct: 440 DLRSILQKSSELVLPAIEKKKIKLDMQFQEELPLVYADAAYLEIAVRNLLDNAVKYVEDT 499 Query: 723 -GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 G+I + T + S VIL V D G+G+ +L++ + F + ++ + GTGLGL + Sbjct: 500 VGRIRV-TAYKSESNVILEVHDNGLGIHPSDLDRIFERFYRADKARSRQSGGTGLGLAIV 558 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 K +V A+ G + S +G++ + P+ Sbjct: 559 KHIVLAHKGTIEVHSRLNQGSVFRMSLPVSTV 590 >gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 745 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 168/371 (45%), Gaps = 16/371 (4%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 +++ + S+ E D I + +G I+ N A ++ G E++L F+ L + Sbjct: 102 ELQEAEQRARSLFEQQGDLIVMRESDGTIIFVNDAYCRMAGLDRENLLGSQFSFDLLEQG 161 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563 S + T + + + + ++ R + + D+++ Sbjct: 162 DSALEPSGTRVHDQRIDSAI---------GPRWIAWREALVRSDAGHPAVQQCVGRDVTD 212 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + L+ A+ A + KS FLA SHEIRTPL I+G S ++ + P Sbjct: 213 RTETERALAEARDQANAANRAKSRFLAMASHEIRTPLNGILGMSGLLLETQLTP----EQ 268 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 YA + SG ++ ++N+LLD SKIE+GK+ L +P +L + E L+ A K+ Sbjct: 269 TTYAKAVRSSGEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQGKQ 328 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + I +P + D ++Q+ LN+ NAI FT GG +I+ E+ +VR Sbjct: 329 LEIAAYLDERLPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIAEPGIWPNEISFQVR 388 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+ E+ + F Q +S GTGLGL ++ +V G+ + S P G+ Sbjct: 389 DTGIGIAADAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRIALQSQPGAGS 448 Query: 803 LIEIIFPLYDT 813 E+ PL Sbjct: 449 TFEVSVPLPPA 459 Score = 46.2 bits (108), Expect = 0.024, Method: Composition-based stats. Identities = 23/234 (9%), Positives = 54/234 (23%), Gaps = 22/234 (9%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + +++ + G ++G + D+ + L+ T + Sbjct: 127 DGTIIFVNDAYCRMAGLDRENLLGSQFSFDLLEQGD--------SALEPSGTRVHDQRID 178 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G + + S + + + + + Sbjct: 179 SAIGPRWIAWRE---ALVRSDAGHP--AVQQCVGRDVTDRTETERALAEARDQANAANRA 233 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL- 269 K ++ + P + L E + + SL Sbjct: 234 KSRFLAMASHEIR-------TPLNGILGMSGLLLETQLTPEQTTYAKAVRSSGEALMSLI 286 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E D+ I + + L +E E L+ R + P Sbjct: 287 NELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQGKQLEIAAYLDERLP 340 >gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus lugdunensis M23590] gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR [Staphylococcus lugdunensis M23590] Length = 569 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 175/396 (44%), Gaps = 29/396 (7%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + ++ R+ K K +I+ +L + LE + +I++ G I+ Sbjct: 189 VRVPESNVKETKALFVTTNELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIV 248 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N + ++FG E + K + F++ + + E + + + Sbjct: 249 VANHSYYEVFGLE-EKVENKDYNDFID----DKIKQLILEAFKTEKSMYNQVEVNINNVH 303 Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 K + + + +HDI+ K+ + + + +F+A V Sbjct: 304 HKYFDVSCVPILSKSKKHLQGMVVVLHDITNLKKLE--------------NLRREFVANV 349 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE++TP+T+I GF+E + + + + N I + N + +V DLLD+S IE Sbjct: 350 SHELKTPITSIKGFAETLIEGAKDDVASLDM--FLNIILKESNRIESLVMDLLDLSHIE- 406 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + L V+L E + +Q A +K I I + +I A+ + Q+ N+L Sbjct: 407 QQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKIAQVITNLL 465 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI+++ ++I+ + +V L ++D G+G++ E + + F ++ ++ Sbjct: 466 SNAINYSLENNRVIVRV-YRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSG 524 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V+A+ G + S P KG+ ++ F Sbjct: 525 GTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 560 >gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis HKU09-01] gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis HKU09-01] Length = 543 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 175/396 (44%), Gaps = 29/396 (7%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + ++ R+ K K +I+ +L + LE + +I++ G I+ Sbjct: 163 VRVPESNVKETKALFVTTNELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIV 222 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N + ++FG E + K + F++ + + E + + + Sbjct: 223 VANHSYYEVFGLE-EKVENKDYNDFID----DKIKQLILEAFKTEKSMYNQVEVNINNVH 277 Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 K + + + +HDI+ K+ + + + +F+A V Sbjct: 278 HKYFDVSCVPILSKSKKHLQGMVVVLHDITNLKKLE--------------NLRREFVANV 323 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE++TP+T+I GF+E + + + + N I + N + +V DLLD+S IE Sbjct: 324 SHELKTPITSIKGFAETLIEGAKDDVASLDM--FLNIILKESNRIESLVMDLLDLSHIE- 380 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 + L V+L E + +Q A +K I I + +I A+ + Q+ N+L Sbjct: 381 QQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKIAQVITNLL 439 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 SNAI+++ ++I+ + +V L ++D G+G++ E + + F ++ ++ Sbjct: 440 SNAINYSLENNRVIVRV-YRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSG 498 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V+A+ G + S P KG+ ++ F Sbjct: 499 GTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 534 >gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803] Length = 806 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 170/326 (52%), Gaps = 17/326 (5%) Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553 F+ + + + L + L ++ + ++ Sbjct: 328 DFFIHLGDRPMFWQAIEQSLEDPTME-LSTELRLEAANGEIYHCLLR-GQIHQEQGEAFV 385 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 T+ DI+E K+ + +L + KI K + K +FLA +SHE+RTPL +I+G E ++N Sbjct: 386 KIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQN 445 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 Q +GPL N + ++ ++ SG +L ++ND+LD+SKIE+G+M+L P S+ V+ ++ Sbjct: 446 QVYGPL-NGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSL 504 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + VQ +A +K+I + + N+P +L D R + Q+ +N+L+NAI FTP GG++++ Sbjct: 505 TFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLI 564 Query: 733 SNE---------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++ V DTG+G+ L +PF QI ++ R +GTGLGL L K Sbjct: 565 KEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKK 624 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V+ + G + S +G+ +I P Sbjct: 625 IVELHGGSVTVTSKLNEGSRFKITIP 650 >gi|332701527|ref|ZP_08421615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332551676|gb|EGJ48720.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 945 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 111/788 (14%), Positives = 246/788 (31%), Gaps = 87/788 (11%) Query: 90 DAHGYLKEISEELPKTIG--NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 G + +S + + G ++G ++ + + + T + Sbjct: 21 GPDGRYEYVSPAIREATGGLLTPEYLVGKHPREIVHNSNDLLRMMESAQTRAKETGRDQV 80 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND--------------- 192 + E P + + F IV Sbjct: 81 LFFDFETPIGTRHFQAVIRPERTCQGQVESF--LSIVRDVSEIRRLQEELAAAKAKAEEQ 138 Query: 193 ---PRALGKRLDKKFSHLHEIKKGHSSVEKEK-------------------YDIFSQQSP 230 + + L++ + + + + + + S Sbjct: 139 AEALKRSNRALERLYQEVEKRVGERTVDLEAEIAERRRSEERLRESEELYRGLFESVSEA 198 Query: 231 PPHLRMKNKVSSLTEYYAHKDDV-------------LKTEKYPLLTSEESSLPEQEDFHT 277 +R + + A + E + + + Sbjct: 199 IFLVRQSDGQILMANETASTMYRYSREELLRLKNMDVSAEPQATKQATHHFMSYIPVRYH 258 Query: 278 INLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333 + Q + EGE V+ Sbjct: 259 CKKDGLVFPVEITASNIVFQGETAHIIAIRDISERMHSEKKLQEGEERYRAVVEDLTEFV 318 Query: 334 FVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392 + G + + N + + + + L D L + + + S Sbjct: 319 TRFTRAGVITFVNEAVCRFHDTPAENVLGKN-----LFD--LLPSSVSDELRRQLASATP 371 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 H I + ++ + + G+ + + R + + Sbjct: 372 EQPLVFLTHPINSPSGEKRWQEWTNRALFDESGKIIEYQGVGRDITEQRYAQEALARREQ 431 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNH 511 + ++ + D I NR+ + N A+S P +++ + + + Sbjct: 432 EFRNLADNAPDPIVRYNRDVVRTYANAALSLALDVPYSELIGQGLSGTPISAEARQDYEQ 491 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567 + E+ + L ++ L ++ + DI++ + Sbjct: 492 AVREVFDSGEEKIF---VLQLNPKKGSLHIQYRLTPEYSEDGQVESVLAIGRDITDLLRL 548 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + +L AK+ AE S KS FL+ +SHEIRTPL +I E++ + Y Sbjct: 549 EQELRQAKETAESASRAKSTFLSNMSHEIRTPLNSIQSVIELL----PSLDISEEAASYV 604 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 ++S + +L ++N+LLD+S+IESGK L +P + + + + A K + + Sbjct: 605 RIAEQSASHLLRLINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLDLA 664 Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVI--L 739 + A+++P R++ D + QI +N++ NAI +T +G +I IS + + Sbjct: 665 VAVADDVPVRLMGDELRLGQILMNLVGNAIKYTDTG-RISISVKRDAACGREDGRIRLLF 723 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 V+DTG+G+ E + F + + + E GLGL ++ +V+ G+ ++ S Sbjct: 724 SVKDTGIGIHQDRCEHIFEGFRHVLDLDRPSSESAGLGLQISTQLVEQMGGRIWVESELG 783 Query: 800 KGTLIEII 807 +G+ Sbjct: 784 QGSTFCFT 791 Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats. Identities = 38/368 (10%), Positives = 88/368 (23%), Gaps = 28/368 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F G + ++E + + A ++G L D+ D + L Sbjct: 317 FVTRFTRAGVITFVNEAVCRFHDTPAENVLGKNLFDLLPSSVSD---ELRRQLASATPEQ 373 Query: 145 GKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 L + + ++ + + ++G G + R ++ Sbjct: 374 PLVFLTHPINSPSGEKRWQEWTNRALFDESGKIIEYQGVG--RDITEQRYAQEALARREQ 431 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKT 256 +F +L + + P+ + + S T A + Sbjct: 432 EFRNLADNAPDPIVRYNRDVVRTYANAALSLALDVPYSELIGQGLSGTPISAEARQDYEQ 491 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + S E + + + + + L+ + + Sbjct: 492 AVREVFDSGEEKIFVLQ--LNPKKGSLHIQYRLTPEYSEDGQVESVLAIGRDITDLLRLE 549 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKL 375 + ET + + F +N S + T S+ IE+ L +A Sbjct: 550 QELRQAKETAESAS------RAKSTFLSNMSHEIRTPLNSIQSVIELLPSLDISEEAASY 603 Query: 376 SDNNAIKPVMLYRS------DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L R + L + + L P Sbjct: 604 VRIAEQSASHLLRLINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLDL 663 Query: 430 QNGIEPED 437 + + Sbjct: 664 AVAVADDV 671 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 7/126 (5%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLE--QN 504 + I+E+ D I + +G + A+ + G E ++ K + + Sbjct: 1 MSEPDFKRIVESAPDTIIVFGPDGRYEYVSPAIREATGGLLTPEYLVGKHPREIVHNSND 60 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDIS 562 +M T Q L + I ++ + + D+S Sbjct: 61 LLRMMESAQTRAKETGRDQVLFFDFETPIG-TRHFQAVIRPERTCQGQVESFLSIVRDVS 119 Query: 563 EWKQEK 568 E ++ + Sbjct: 120 EIRRLQ 125 >gi|325109467|ref|YP_004270535.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324969735|gb|ADY60513.1| multi-sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 1506 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 107/739 (14%), Positives = 236/739 (31%), Gaps = 49/739 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + +++E+ + + GM++ D+ + + L +T Sbjct: 786 PDGRIALVNDEVCAMFDLSSAALQGMQVEDLFEQTFDEDQGVDLQFLFENPPEQAETITL 845 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 + + + A + + + G + A +R ++ E+ Sbjct: 846 RLPARSSDERVFPAEVKVTRAD-TLEGTILLLSLIDQTEVERIEASLRRTEELLKKTSEM 904 Query: 211 KKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + K + ++ L T+ + Sbjct: 905 ARIGGWEFDAITRELHWSDEVCRIHDVPAGFKPTLEQAVQFMTPDSQKLATDAIDEMLKT 964 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + ++ T + Q + + K + S + LT Sbjct: 965 GKPYDLELEYITASGRQVWGRAIGEPEFKDGKCVRMW-GALQDISNYKETERRLQLTRHA 1023 Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 V+ F+ G L Y N Y + ++ AP + + Sbjct: 1024 VEFSADAVYFIERDGQLRYVNDRACRDLGYTKTE----FESMTVSDIAPNVPAERWEEEW 1079 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + RL R+N +F + + Sbjct: 1080 QQNKEIG------NRLFESIHQRKNGEKFPCQIQTSFLKFESQELIVATVRDITQAK--- 1130 Query: 445 RKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKP---FTV 499 +L ++ E ++D + + G IL N+A + P + +L + F+ Sbjct: 1131 -----REAELRHTLFERSADAHLLFDETG-ILECNQAAIDMLRMPDRENLLGRQPFEFSP 1184 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLT 557 + N + + + + + + + + +L L Sbjct: 1185 EYQPNGERSEDLRGKYVAQAYESGSFRFDWIHTRANGEEFPCDVTLTAVELESGPALLLV 1244 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKS-------DFLARVSHEIRTPLTAIIGFSEVI 610 HDISE KQ + + + +F SH+++TPL I GF++ + Sbjct: 1245 WHDISERKQAEETQVALTLQVVEANRALERTNAELKEFAYVASHDLQTPLRGISGFAQFL 1304 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 K G L + + EY + I + ++ DLL S+++ + F V L+ + + Sbjct: 1305 KEDYEGKL-DEQADEYLSRISDGAQRMQRLIKDLLAYSQVDL--TSSAFASVDLNTLLDD 1361 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 I ++ + A +P + + + Q+ N++SN++ + +I + Sbjct: 1362 VIGYLRPAIETSAADVT---AERLPTVQGNSTQLFQLFQNLVSNSLKYRNQEHTVIQISA 1418 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 EE ++ VRD G+G+ ++ + F ++ Q EGTG+GL L + +V+ + G Sbjct: 1419 EEREEEWVIGVRDNGIGIAPEHHDRIFQIFRRLH--TQKEYEGTGVGLALCRRIVERHGG 1476 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + ++ S G + P Sbjct: 1477 EIWVESDEDNGCCFKFTLP 1495 Score = 98.9 bits (245), Expect = 3e-18, Method: Composition-based stats. Identities = 43/506 (8%), Positives = 127/506 (25%), Gaps = 32/506 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D + +++ + ++G ++ G ++ ++ Sbjct: 671 DRENLILRVNQSVLDSLGMSRAEVEGRASSELYPNNAEQFYQDDLQVIASGKP------K 724 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---LDKKFSH 206 + +PI + E R I +L + + Sbjct: 725 LAFVEPIGDRWVRTDKIPITNVAGEVD--RILVIATDVTEQRRAESLVRAWFNASPEGMI 782 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + V E +F S + + + V + + Sbjct: 783 TARPDGRIALVNDEVCAMFDLSSAALQGMQVEDL--FEQTFDEDQGVDLQFLFENPPEQA 840 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES--FEYLSHRNHPSLSAYFDEGENLTPE 324 ++ + + + + + + + A E L + Sbjct: 841 ETITLRLPARSSDERVFPAEVKVTRADTLEGTILLLSLIDQTEVERIEASLRRTEELLKK 900 Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 T + I + + + + + + + + + + +AI Sbjct: 901 TSEMARIGGWEFDAITRELHWSDEVCRIHDVPAGFKPTLEQAVQFMTPDSQKLATDAIDE 960 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 ++ L I + E + + + G + + + Sbjct: 961 MLKTGK-----PYDLELEYITASGRQVWGRAIG--EPEFKDGKCVRMWGALQDISNYKET 1013 Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 +R++++ +E ++D + I R+G + N + GY + + Sbjct: 1014 ERRLQLT----RHAVEFSADAVYFIERDGQLRYVNDRACRDLGYTKTEFESMTVSDIAPN 1069 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDI 561 + + R ++ K + +I K T+ DI Sbjct: 1070 VPAERWEEEWQQNKEIGNRL---FESIHQRKNGEKFPCQIQTSFLKFESQELIVATVRDI 1126 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587 ++ K+E + + + Sbjct: 1127 TQAKREAELRHTLFERSADAHLLFDE 1152 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 40/379 (10%), Positives = 96/379 (25%), Gaps = 29/379 (7%) Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 GH V ++ + + + + V+ Y + Sbjct: 550 VNGHQIVYQKGNPLLGDEDLDFTAEITDSVAGRMWTYRFAALPGYVSSARSGAPWLALTA 609 Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330 + + ++ + L+ + T +D P Sbjct: 610 GLLLSTLVGIGTMRLHDRSLKMEEVAAARKGQLN-----AAEMRLFREREETQLILDSIP 664 Query: 331 IPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389 F+ + N S L + A S L + + + + Sbjct: 665 SLIFLKDRENLILRVNQSVLDSLGMSRAEVEGRAS--SELYPN---NAEQFYQDDLQVIA 719 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 A +W + N E I + + R + + Sbjct: 720 SGKPKLAFVEPIGDRW-------VRTDKIPITNVAGEVDRILVIATDVTEQRRAESLV-- 770 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + A+ +G+ +G I N V +F + EQ Sbjct: 771 -----RAWFNASPEGMITARPDGRIALVNDEVCAMFDLSSAALQGMQVEDLFEQTFDEDQ 825 Query: 510 NHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565 L + + +T+ + +E++ + + + L + D +E + Sbjct: 826 GVDLQFLFENPPEQAETITLRLPARSSDERVFPAEVKVTRADTLEGTILLLSLIDQTEVE 885 Query: 566 QEKNKLSHAKKIAEKESSH 584 + + L +++ +K S Sbjct: 886 RIEASLRRTEELLKKTSEM 904 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 69/265 (26%), Gaps = 21/265 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + I+ G L+ +++ + +G + M + D++ + + K Sbjct: 1031 VYFIERDGQLRYVNDRACRDLGYTKTEFESMTVSDIAPNVPAERWEEEWQQNKEIGNRLF 1090 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 ++ G I + L ++E V L L ++ + Sbjct: 1091 ESIHQRKNGEKFPCQIQTSFLKF--ESQELI----VATVRDITQAKREAELRHTLFERSA 1144 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H + +E + I + P + + + Y + + + + Sbjct: 1145 DAHLLFDETGILECNQAAIDMLRMPDRENLLGRQPFEFSPEYQPNGERSEDLRGKYVAQA 1204 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S + D+ N + L + S +E + Sbjct: 1205 YESGSFRFDWIHTRANGEEFPCDVTLTAVELESGPALLLVWHDISERKQAEETQ------ 1258 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLL 350 V + AN + Sbjct: 1259 ---------VALTLQVVEANRALER 1274 >gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 838 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 112/550 (20%), Positives = 211/550 (38%), Gaps = 35/550 (6%) Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344 ++ L S+ ++ + V + P Y+ + Sbjct: 32 QRPELLKLSQYSERPSNEMTEVLRTTEQILVRAEAAQDRFLVSRQPTDLQSYNS-EITAL 90 Query: 345 NPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC----IAASA 398 N +++ + +A L L+ A + N + + Sbjct: 91 NGQLARMSQLVRNKPREHAMAVKLGHLIRAHIETANTQVMTPQRRPAQTEESLDKTRYQI 150 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQ---FPENMPQNGIEPEDVDTRINKR------KMEI 449 R I+ ++ A+ F P ++ I + + ++ Sbjct: 151 RHQLIEMQAASAPAIKFKPTKEGQNFLLGLCAAIVLIIASRVLQRKEQHETRKAVEALQG 210 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQNT 505 + + L +IL + S+ + ++++ G N A ++ G +++I F + Sbjct: 211 KSILLDTILNSMSEALIVVDQNGWFTHYNAAAQRIIGSKIKEISTDSSVEQLGFFNQAEG 270 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560 L +L + + E +SL + D Sbjct: 271 RPFTRKELPLYRALSGDRVDDLEIFVQNSEHPEGIYISLSSRPLNDIDGGISGALIVFKD 330 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 IS K + + A++ A + S KSDFLA +SHEIRTP+ +IG + ++ + N Sbjct: 331 ISRRKMVEQEWIRAREAALEASQKKSDFLAAMSHEIRTPMNGVIGMTTLLADTHL----N 386 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P +Y I RS +L ++NDLLD SKIE+GK+ L +P+ L V + + + + Sbjct: 387 PEQTDYVGNIKRSAESLLMLINDLLDHSKIEAGKIRLDPQPLDLQFLVEDVLEMFKPTVA 446 Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE-- 736 EK I + F N+ AD ++QI +N++ NA+ FT G ++ +S+ + + Sbjct: 447 EKNIGLECRFDGKNLWHYRADAGRLRQILVNLMGNAVKFTEKGFVRLEVSSRGDKDGKTA 506 Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796 ++ V+DTG G+ +E + + Q + GTGLGL + K +VD G + S Sbjct: 507 LLFEVKDTGQGLQEHEKRSLFQKYFQAKAGM--KFGGTGLGLSICKQLVDLMGGDIGVES 564 Query: 797 TPAKGTLIEI 806 P G+ Sbjct: 565 VPGVGSNFWF 574 >gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum L-1] Length = 766 Score = 330 bits (845), Expect = 9e-88, Method: Composition-based stats. Identities = 102/537 (18%), Positives = 204/537 (37%), Gaps = 28/537 (5%) Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337 + + + LQ+ E++ + T V+ VY Sbjct: 2 ADPSSPGWMKEMLALQSAVTEAYADFQQIIDEVVERALRIIPLATGAIVEMRDGDDMVYR 61 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 + + L S+ +A G T +D + R+ + Sbjct: 62 AASGTSIQQIGMRLALSGSLSGTCVATG-ETQFCHDSETDPRVDRDACRKVGVRSMM--- 117 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 L + ++ + + A ++ + + T + Sbjct: 118 --LVPLPYHGRTVGVLKVYSGQVAAFTRADLDVVRLMAGPIATGFANAAHSEAARHFAAT 175 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 E + G+A + +G L N ++ GY E+++ + ++ L L Sbjct: 176 FEQAAVGLAHCSPQGRFLLVNDRFCEIAGYEREELIGLDYRQITHPADYE-IDARLAGRL 234 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573 L K+ L+ + + + + +S + + DI + + Sbjct: 235 LLGEINDFAYEKRYVRKDGGLVWINLTVSLVRDASGEPDFFVCVVEDIGARRSAEM---- 290 Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 S+ K+ FLA +SHEIRTP+ I+GF++++ G P I S Sbjct: 291 -------ASAAKTGFLANMSHEIRTPMNGILGFADLLL----GAGLPPDQHRQVKMIADS 339 Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 G ++ ++ND+LD+SK+E+G+M + EP L A+ ++LV++ A +K I + A++ Sbjct: 340 GRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGIDLIRDIADD 399 Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 +PR + D ++Q+ LN+L NA+ FT G + + + +++ V D+G G+ Sbjct: 400 LPRTVTGDGLRLRQVVLNLLGNAVKFTSEG-HVALRVHLDGADRLVIVVEDSGPGIAPER 458 Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q R G+GLGL ++ +V G+ + S +G+ + P Sbjct: 459 QAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGEGSRFILRLP 515 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 35/397 (8%), Positives = 100/397 (25%), Gaps = 24/397 (6%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTT 148 G +++ + G ++IG+ ++ + + + LL N + + Sbjct: 188 PQGRFLLVNDRFCEIAGYEREELIGLDYRQITHPADYEIDARLAGRLLLGEINDFAYEKR 247 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G +++ + ++ + + E F +V +++ Sbjct: 248 YVRKDGGLVWINLTVSL--VRDASGEPDFF--VCVVEDIGARRSAEMASAAKTGFLANMS 303 Query: 209 EIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + P H ++K S +D+L K E Sbjct: 304 HEIRTPMNGILGFADLLLGAGLPPDQHRQVKMIADSGRAMMRLLNDILDLSKVEAGQMEI 363 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + P H ++ + + R + Sbjct: 364 AREPFDLV-HALDACLNLVRVGAEQKGIDLIRDIADDLPRTVTGDGLRLRQVVLNLLGNA 422 Query: 327 ------DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-----GGLSTLLDAPKL 375 + + L + I G + L Sbjct: 423 VKFTSEGHVALRVHLDGADRLVIVVEDSGPGIAPERQAAIFEKFVQADAGTAARFGGSGL 482 Query: 376 SDNNAIKPVMLYRSDRTCIAASAR----LHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + V L + T + + + A + + + + Sbjct: 483 GLSISAQLVTLMNGELTLDSVVGEGSRFILRLPCEAAGEDAAVAVAPAARDSALLHDLRV 542 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468 + + + R M + +I+E + +A + Sbjct: 543 LVAEDHDVNQELVRAMLERIGCSATIVEDGAQAVAAV 579 >gi|229035319|ref|ZP_04189227.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271] gi|228727999|gb|EEL79067.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271] Length = 603 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 103/532 (19%), Positives = 213/532 (40%), Gaps = 47/532 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351 + E + + + + T E ++ G++ AN ++ + Sbjct: 96 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 155 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ + + Sbjct: 156 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 207 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 208 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 267 Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + +N + + N + FGY E++L F+ + Q++ ++ L +I Sbjct: 268 AVYVVELNEDNVPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVK-LLEKIKK 326 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T + + + L + DI+E + + L ++K+A Sbjct: 327 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 386 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ N Y N + + Sbjct: 387 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 436 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I N+ + ++K + K+ L+ + + + + L+Q A I IR IP I Sbjct: 437 SITNEFMTVAKPQVVKIQLN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 492 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NI+ NAI P GG+I+I N ++ +R D G G+ + + Sbjct: 493 CEGNQLKQVFVNIVKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 552 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P+ Sbjct: 553 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLPI 598 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 9/202 (4%) Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + + + W + ++ + + + + G + + + + ++ Sbjct: 65 QAWEGNEIIFELPWPNDKTIILI--ALRPIKRNGQVIEVVGSTVDITERKKVESELSATK 122 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 L S ++ D I I +REG IL N+A K+FG+ ++I+ K + Sbjct: 123 ELLESFIKHNLDAITISDREGHILQANKAYEKIFGWSSQEIIGKRL-PCVPDFLMEESLE 181 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQE 567 + +IL T+ + LL + + + + DISE KQ Sbjct: 182 NIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSPILDVRGNVIALSAICRDISERKQA 240 Query: 568 KNKLSHAKKIAEKESSHKSDFL 589 + + + ++S K L Sbjct: 241 ERERHRLHQQL-RDSEMKYRAL 261 Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G++ + ++ K G + ++IG RL V D L + +I +L ++ +T Sbjct: 140 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 199 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ L + + ++ PI I RL ++ Sbjct: 200 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 255 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238 + + + R Sbjct: 256 MKYRALIEQATDAVYVVELNEDNVPSRFIE 285 >gi|262395232|ref|YP_003287086.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25] gi|262338826|gb|ACY52621.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25] Length = 784 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 174/406 (42%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEDDFATIIMEVEDTGIGIPEDELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELEEP 516 Score = 46.9 bits (110), Expect = 0.015, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + + Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|188579431|ref|YP_001922876.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] gi|179342929|gb|ACB78341.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi BJ001] Length = 957 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 98/753 (13%), Positives = 207/753 (27%), Gaps = 54/753 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148 ++ + +G+ +G R ++ + + + + TW Sbjct: 88 GPDLAFVY-NDAYAEILGDKHPAALGRRFREIWPEIWEAITPFVDSAMAGEATWAENLPF 146 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + + PI + + G F + + + S L Sbjct: 147 TMNRHGYDEQTTFTFSYSPIRNEDGTVGGM--FCSCTETTARVRAEEALRASEARASGLL 204 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 E + + + I + L R ++V + + + L Sbjct: 205 EGMGEGFMLLDQDFRILQMNAEGLRLEERPPDQVVGRSHWEVYPGSEAMPIGQMYLRVMR 264 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + + + + + + Y E E Sbjct: 265 ERVSRTLEHRYVWPDGHAVWLEVRAYPHPEGLALFYRDVTERREREDALREAEARFQTIA 324 Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + + Y N + T G + P + Sbjct: 325 NSIDQMVWSTRADGYHDYYNQRWYDFTGVP---AGTTDGAAWEGIVHPD-DRERTWEVWS 380 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + RL + + + + G + D + Sbjct: 381 ASLASGEPYRIEYRL---RHHTGQHRWTLGRALPMRDATGQVTRWFGTCTDIQDIVEARD 437 Query: 446 KMEIEVMQLCSIL-------EAT----SDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + +L ++ + +D + + + I + N A + L G+ D++ Sbjct: 438 VLARSREELEGLVTERTADRDRMWRLSTDIMLVARYDATIEAVNPAWTTLLGWDERDLVG 497 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554 F + + + + E+ TL K+ L Sbjct: 498 GAFMDLVHPDDVAPTLAEVGELSEGRT--TLRFENRYRHKDGSYRWLSWTAVPAED--RI 553 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 D++ K+ L+ ++ + ++H+ LT I G E + Sbjct: 554 HAVGRDVTAEKEAAQALAETEEALRQSQKMEAVGQLTGGIAHDFNNLLTGISGSLE-LLQ 612 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 R Y + + + LL S+ + L P ++ + Sbjct: 613 TRMSQGRLTEIDRYMTAAQGAAKRAAALTHRLLAFSR----RQTLEPRPTDVNGLIHGME 668 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 L++ + I A + L D ++ LN+ NA P GG+I + T + Sbjct: 669 ELIR-RTVGPAVHIEVVGAGGLWPALVDPGQLENALLNLCINARDAMPEGGRITVETANR 727 Query: 733 -------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + + L V DTG GM+ + KA PF G+GTGLGL Sbjct: 728 WLDHHAARERDLPPGQYLSLCVTDTGTGMSADVVAKAFDPFFTTKP----IGQGTGLGLS 783 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + + G+ I+S +GT + + P + Sbjct: 784 MIYGFAKQSGGQVRIYSEIGQGTTVCLYLPRHH 816 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 39/340 (11%), Positives = 97/340 (28%), Gaps = 17/340 (5%) Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L +++LP + T + + E + + S + Sbjct: 2 APTESLAGGKTTLPAAFPIQAPPQSMSETSPSTTAAFLSGGGQMGERMRANDWSSSPLGW 61 Query: 316 DEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370 E +V + F + F N ++ + K + Sbjct: 62 PETWPQALRSVASLMLGSRFPMFAAWGPDLAFVYNDAYAEILGDKHPAALG------RRF 115 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMP 429 AI P + A T+ + + TF N+ Sbjct: 116 REIWPEIWEAITPFVDSAMAGEATWAENLPFTMNRHGYDEQTTFTFSYSPIRNEDGTVGG 175 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 E + + + +LE +G +++++ IL N +L P Sbjct: 176 MFCSCTETTARVRAEEALRASEARASGLLEGMGEGFMLLDQDFRILQMNAEGLRLEERPP 235 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + ++ + + + ++ + +TLE + + + L + P Sbjct: 236 DQVVGRSHWEVYPGSEAMPIGQMYLRVMRERVSRTLEHRYVW--PDGHAVWLEVRAYPHP 293 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 +L D++E ++ ++ L A+ + ++ + Sbjct: 294 E--GLALFYRDVTERREREDALREAEARFQTIANSIDQMV 331 Score = 91.2 bits (225), Expect = 7e-16, Method: Composition-based stats. Identities = 28/389 (7%), Positives = 91/389 (23%), Gaps = 44/389 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147 +D + +++ E + +++G +V P + +++ + + + Sbjct: 214 LDQDFRILQMNAEGLRLEERPPDQVVGRSHWEVYPGSEAMPIGQMYLRVMRERVSRTLEH 273 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G V +++ A P G F + + + +F + Sbjct: 274 RYVWPDGHA--VWLEVRAYPH------PEGLALF--YRDVTERREREDALREAEARFQTI 323 Query: 208 HEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + D ++Q+ D + S Sbjct: 324 ANSIDQMVWSTRADGYHDYYNQRWYDFTGVPAGTTDGAAWEGIVHPDDRERTWEVWSASL 383 Query: 266 ESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 S P + +++ + + + + + Sbjct: 384 ASGEPYRIEYRLRHHTGQHRWTLGRALPMRDATGQVTRWFGTCTDIQDIVEARDVLARSR 443 Query: 324 ETVDKC---------------PIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367 E ++ V + + NP++ L + D + A Sbjct: 444 EELEGLVTERTADRDRMWRLSTDIMLVARYDATIEAVNPAWTTLLGWDERDLVGGA---- 499 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 D+ A + + + + +++ + Sbjct: 500 --FMDLVHPDDVAPTLAEVGELSEGRTTLRFE-NRYRHKDGSYRWLSWTAVPAED----- 551 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + + + + + L Sbjct: 552 -RIHAVGRDVTAEKEAAQALAETEEALRQ 579 Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats. Identities = 56/502 (11%), Positives = 128/502 (25%), Gaps = 52/502 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144 W+ A GY ++ G A G + + + L + Sbjct: 331 VWSTRADGYHDYYNQRWYDFTGVPAGTTDGAAWEGIVHPDDRERTWEVWSASLASGEPYR 390 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L G + ALP+ + + R FG + + R + R ++ Sbjct: 391 IEYRLRHHTG--QHRWTLGRALPMRDATGQVT--RWFGTCTDIQDIVEARDVLARSREEL 446 Query: 205 SHLH-----------EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250 L + V + I + L ++ V H Sbjct: 447 EGLVTERTADRDRMWRLSTDIMLVARYDATIEAVNPAWTTLLGWDERDLVGGAFMDLVHP 506 Query: 251 DDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 DDV T + L+ ++L + + + + ++ ++ Sbjct: 507 DDVAPTLAEVGELSEGRTTLRFENRYRHKDGSYRWLSWTAVPAEDRIHAVGRDVTAEKEA 566 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + + E + ++ + G N ++ S++ ++ L Sbjct: 567 AQALAETEEALRQSQKME----AVGQLTGGIAHDFNNLLTGISG--SLELLQTRMSQGRL 620 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-----FIPFEKANQF 424 + + +A S R + + + Sbjct: 621 TEIDRYMTAAQGAAKRAAALTHRLLAFSRRQTLEPRPTDVNGLIHGMEELIRRTVGPAVH 680 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAV 481 E + G+ P VD + + L + +A +G G I Sbjct: 681 IEVVGAGGLWPALVDPGQLENAL------LNLCINARDAMPEG-------GRITV--ETA 725 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ + P +L ++++ +G + L L Sbjct: 726 NRWLDHHAARERDLPPGQYLSLCVTDTGTGMSADVVAKAFDPFFTTKPIG---QGTGLGL 782 Query: 542 RIIIKKLPFSSCYSLTMHDISE 563 +I S +I + Sbjct: 783 SMIYGFAKQSGGQVRIYSEIGQ 804 >gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus weihenstephanensis KBAB4] gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621] gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196] Length = 591 Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 158/365 (43%), Gaps = 27/365 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E QL SIL + +DG+ +N+EG ++ N E+ + Sbjct: 249 ALQQEKEQLASILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEEKEVELIKKL----- 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 PS + ++ + +Q +E + + L + + D++E + Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I + +VN+LLD++++ESG + LH V + V + Q A +K + Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I + D ++Q+ N++ NAI T +GG + + ++ + V+D+G Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSG-LTFEVQDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+ ++ F + ++ + GTGLGL +AK +V + GK ++ S +GT Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTF 582 Query: 805 EIIFP 809 + P Sbjct: 583 SVYLP 587 >gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides finegoldii DSM 17565] Length = 669 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 100/513 (19%), Positives = 192/513 (37%), Gaps = 25/513 (4%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 L S + +DK V G L YAN F+ I Sbjct: 145 VLIMCRDISERVATQRQLEVFKSVLDKVSDSILAVSKDGTLVYANKQFIEEYGVTKELGI 204 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + L + + + + R + A A + ++ ++ Sbjct: 205 QKVYDLPVSMTTKEAWEKRLQEI----RDNDGSFAYRAAYVRMGETKKRVHQVSSFLTH- 259 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478 E + D + ++ L IL + + + E L N Sbjct: 260 ---ENEQELIWFFTQDITDVIKKRDELRELNQLLDGILNNIPVYLFVKDPADEFKYLYWN 316 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 +A ++ G P + + E+L R +++ L + E ++ Sbjct: 317 KAFAEHSGIPASKAIGHTDYEIFQSEEAEKFRKDDLELLRTHQRIDIQETYLTANGEARI 376 Query: 539 LSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + + D + + + +L A+ AE+ KS FLA +SHEIR Sbjct: 377 VQTLKALVPMEDREPLLIGISWDTTNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIR 436 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPL AI+GFS+++ Y++ I+++ +++L ++ND+LD+SKIE+G + Sbjct: 437 TPLNAIVGFSQLL----PTADTPEEQKLYSDIINQNSDILLQLINDILDLSKIEAGTLEY 492 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717 P++L E ++ + + ++ D + QI N ++NA Sbjct: 493 VKRPINLGEVCRTIYAVHKERIKG-GVDFIFDNGEEDLQMEGDPNRIMQIITNFITNATK 551 Query: 718 FTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT +G I E V + V+DTG+G+ ++ + F ++ + +GTGL Sbjct: 552 FTHAG---EIRFGFEREGENVRVYVKDTGIGIEKEKVGHIFERFVKLNSF----VQGTGL 604 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL + + +++ G+ + S KG+ I P Sbjct: 605 GLSICRMIIEKIGGEIGVTSEFGKGSTFYFIIP 637 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 5/127 (3%) Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 IL + D + + + I I + + G ED + + ++ + Sbjct: 51 ILNSLPDMLTVFDHNEIGIEVVSNEETNHVGVTNEDFVGMHMRNMVPPEAYQNIHSNMQH 110 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 ++ K I L + DISE + +L K Sbjct: 111 AVATGAVSAAHHEL---DFNGKRHYYENRIFPL-DEKYVLIMCRDISERVATQRQLEVFK 166 Query: 576 KIAEKES 582 + +K S Sbjct: 167 SVLDKVS 173 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 11/169 (6%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW 150 ++ + G A K IG ++ + +LL+ + T Sbjct: 309 EFKYLYWNKAFAEHSGIPASKAIGHTDYEIFQSEEAEKFRKDDLELLRTHQRIDIQETYL 368 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 G V A +P+ R G I + + K + Sbjct: 369 TANGEARIVQTLKALVPMEDREPLLIG-----ISWDTTNLQNIEQELIKARIKAEQSDRL 423 Query: 211 KKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 K + + I P + ++ D+L Sbjct: 424 KSAFLANMSHEIRTPLNAIVGFSQLLPTADTPEEQKLYSDIINQNSDIL 472 >gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria AMMD] Length = 768 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 96/507 (18%), Positives = 186/507 (36%), Gaps = 29/507 (5%) Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + P G + Y N + + L D L + Sbjct: 124 AARRQLDAVLQALPDGVIATDAQGRITYVNAAAIALAGGALEDA-TGRPVRDVLHVFDRD 182 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 P+ + ++ LH + + + + + Sbjct: 183 DRPVQPTPLERALAGAHALSDRHWLHGA--DGSPPVPIVEAASPIVDAHGSLDGAVLLLR 240 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + +R + ++++A+ D I I+REG I+S N A ++FGY D + Sbjct: 241 D----AGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGR 296 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P + + L + L ++ + + + + Sbjct: 297 PLETLVAMRWLR--RNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARNC 354 Query: 556 LTM------------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + + D+ ++ A+ A+ + K + LA VSHE+RTPL I Sbjct: 355 VALSLTLRETGAQRRRDL-RTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVI 413 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 G+ EV++N R L + + IDRS + +V D+LD S + +GK+ + PV Sbjct: 414 YGWIEVLRNTRDDALE----QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVD 469 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + S+ + Q A+ I++ A + + D ++Q+ N++SNA+ FTP GG Sbjct: 470 VVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGG 529 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + ++ + + +L V DTG G+ + F + +S G GLGL + + Sbjct: 530 AVTVTLS-RDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRH 588 Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFP 809 + + G+ + S +G + P Sbjct: 589 IAGLHGGQVRVESAGRNRGATFTVTLP 615 Score = 64.3 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 35/377 (9%), Positives = 84/377 (22%), Gaps = 20/377 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWY 144 DA G + ++ G G + DV + D + L + Sbjct: 143 TDAQGRITYVNAAAIALAGGALEDATGRPVRDVLHVFDRDDRPVQPTPLERALAGAHALS 202 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRL 200 + L +G+ VPI AA PI + G R G + + Sbjct: 203 DRHWLHGADGSP-PVPIVEAASPIVDAHGSLDGAVLLLRDAGTERALAEVSRLQRAVVDA 261 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + S IF R + ++ + Sbjct: 262 SPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNPLADSFDAMRE 321 Query: 261 LLTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + E + + TL+ + L + + Sbjct: 322 AVGPLELLCVRRDGRRFRATVSAGPVRGDARNCVALSLTLRETGAQRRRDLRTQRSLQGA 381 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLL 370 + + + D+ + + ++ + + D +E + Sbjct: 382 RDARDRADTSNRLKDEL-LATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSA 440 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + L + + + + +F Sbjct: 441 RSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASA 500 Query: 431 NGIEPEDVDTRINKRKM 447 + + R + Sbjct: 501 CVVSGDAERLRQMLANL 517 >gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855] Length = 2002 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 137/768 (17%), Positives = 268/768 (34%), Gaps = 60/768 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G L + + + G ++ M D+ + + + Sbjct: 1239 LDEQGDLLFWNRRVNEVTGYTDAELEAMTALDLFEGDDAARIRDAIEESAAGQAVRVEAP 1298 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G VP + + R G GI + R +R +++F L Sbjct: 1299 LVTKDGR--RVPHEFVGDAFDAPTR---GRVLCGIGRDVTQQKERRRALRRANQRFEQLA 1353 Query: 209 EIKKGHS-SVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYPL 261 E V + ++ S L +++ S+ T + D Sbjct: 1354 ETVPNAFYIVTPDYSELLYANSAVETLYGVDRDTLRDNPSAWTRHVHPADLAALRSDIEA 1413 Query: 262 LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 ++E P+ ++F + + ++ + ++ Sbjct: 1414 QNADEPRWPQHQEFRVLHPTRGRRWLTARIDAIYDDEGALQRLAGVTTDVTDQKVREQRL 1473 Query: 320 N-LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV-------DDIEIAGGLSTLLD 371 L T D + G + + D + AG + + + Sbjct: 1474 RTLYRVTRDLLDVS---TKAGAASTVTDALGDTLGLQEAAVYLRDGDVLVRAGTIDSEVV 1530 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAAS----------------ARLHTIQWNRENSLAMTF 415 P+ S A S + ++ Sbjct: 1531 GSMPRVEQGHTPLWAALSTGDTHAYSDPSTIDDGVDRSGLEGCAYVPLGQRGVLAVGAAA 1590 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGII 474 ++ + +D +R + + ++ E +G + + + Sbjct: 1591 QNRLDDDELRLLEVVAQSFQDTLDALDQERDLIERERRYRTLAENIPNGAVFLFDEGLTY 1650 Query: 475 LSTNRAVSKLFG---YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531 A +L G D+L L +L+ QT +I +G Sbjct: 1651 TL---AAGELLGTYELGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALEGEQTDRRIGVG 1707 Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 + L + ++ + ++ + DI+E +++ +L AKK AE+ + KS LA Sbjct: 1708 ----GRTLRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRMKSSLLAN 1763 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR------YIEYANYIDRSGNLVLDIVNDLL 645 +SHEIRTPLT+I+GF+E+I+ + E+A I +SG ++D + +L Sbjct: 1764 MSHEIRTPLTSILGFAEMIEEEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVL 1823 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705 ++S++E+G+M+L EPV L E E ++ A + + ++ AD V+ Sbjct: 1824 NLSRLEAGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQADGGGVQ 1883 Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765 + N++SNAI +T G +I + + N ++ V D+G+GM ++E KPF Q Sbjct: 1884 IVLRNLVSNAIKYTDDG-EIRLRV-YRENGSAMIEVEDSGIGMDPEKIEDLFKPFRQASE 1941 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 EGTGLGL + + V+ G + + KGT I + P ++ Sbjct: 1942 GMAREYEGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEES 1989 Score = 128 bits (322), Expect = 4e-27, Method: Composition-based stats. Identities = 61/506 (12%), Positives = 143/506 (28%), Gaps = 40/506 (7%) Query: 90 DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 DA G + E + +G ++IG D+ + L R++ Sbjct: 986 DAETGKIVEANAAATGLLGRPREEIIGAHQTDLHPSGRAEAYAS----LFRRSLDEDGPM 1041 Query: 149 LWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +GT + VP+++ A + + +G+ + R Sbjct: 1042 RALPDGTQIEVVTDEGTTVPVEVNATTVDLPDGRVV----YGVFRDVSERKAMQKRLTRR 1097 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 +++F + E + E+ Q + + L + L E+ Sbjct: 1098 ERRFRMMFEGHSAPMLLIDEETGAIEQANAAAVEFYGYERDILMSMSIQDINQLPAEEVA 1157 Query: 261 LLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 E + ++ F + T + + N + S + + + Sbjct: 1158 RERREAAEDGDEFLFEHELASGAVRTVRVLSAPIPNLDRAGTLLFSVIHDVTQREEHRQD 1217 Query: 319 ENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 +D+ + G+L + N +T Y + +E L Sbjct: 1218 LADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAE-LEAMTALDLF---- 1272 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + D I+ + + + A L + + A + GI Sbjct: 1273 EGDDAARIRDAIEESAAGQAVRVEAPL--VTKDGRRVPHEFVGDAFDAPTRGRVL--CGI 1328 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDI 492 + + +R + + + E + I+ + +L N AV L+G + + Sbjct: 1329 GRDVTQQKERRRALRRANQRFEQLAETVPNAFYIVTPDYSELLYANSAVETLYGVDRDTL 1388 Query: 493 LRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550 P +T + + + + + + R + L I + Sbjct: 1389 RDNPSAWTRHVHPADLAALRSDIEAQNADEPRWPQHQEFRVLHPTRGRRWLTARIDAIYD 1448 Query: 551 SSCYS----LTMHDISEWKQEKNKLS 572 D+++ K + +L Sbjct: 1449 DEGALQRLAGVTTDVTDQKVREQRLR 1474 Score = 120 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 51/505 (10%), Positives = 134/505 (26%), Gaps = 38/505 (7%) Query: 97 EISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGT 155 + E L G+ ++ + D + ++ +W G L+ E Sbjct: 870 QWDETLQDLFGHDPQTF--EAFTEIVHPNDLPDVEAALENMTSTGESWEGDFWLFHPEEG 927 Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215 + L A P++ + R GI + + +++ L + Sbjct: 928 VARMS--LRATPVHEKGEAV---RVLGIATDVTAQWERQRDLATSRERYQTLLQANPDPV 982 Query: 216 SVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKT-----EKYPLLTSEES 267 V + + + R + ++ + H + + Sbjct: 983 LVADAETGKIVEANAAATGLLGRPREEIIGAHQTDLHPSGRAEAYASLFRRSLDEDGPMR 1042 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326 +LP+ + T + + S + Sbjct: 1043 ALPDGTQIEVVTDEGTTVPVEVNATTVDLPDGRVVYGVFRDVSERKAMQKRLTRRERRFR 1102 Query: 327 -----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 P+ G + AN + + Y+ D + +L Sbjct: 1103 MMFEGHSAPMLLIDEETGAIEQANAAAVEFYGYER-DILMSMSIQD----INQLPAEEVA 1157 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + D L + + + N + + Sbjct: 1158 RERREAAEDGDEFLFEHELAS-----GAVRTVRVLSAPIPNLDRAGTLLFSVIHDVTQRE 1212 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 +++ + + L +L+ D +++ +G +L NR V+++ GY ++ Sbjct: 1213 EHRQDLADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAELEAMTALDLF 1272 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTM 558 E + + + + E + + TK+ + + + Sbjct: 1273 EGDDAARIRDAIEESAAGQAVRV---EAPLVTKDGRRVPHEFVGDAFDAPTRGRVLCGIG 1329 Query: 559 HDISEWKQEKNKLSHAKKIAEKESS 583 D+++ K+ + L A + E+ + Sbjct: 1330 RDVTQQKERRRALRRANQRFEQLAE 1354 Score = 87.8 bits (216), Expect = 7e-15, Method: Composition-based stats. Identities = 43/504 (8%), Positives = 137/504 (27%), Gaps = 39/504 (7%) Query: 95 LKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 L ++ G + M + P L W G+ + Sbjct: 243 LAYVNSSEEHIFGRPTDAFVRDPMLWRSAAHPKD-QPELPTARDLLEHGRWRGEYRVLRP 301 Query: 153 EGTNLYVP--IDLAALPIYS--RNREFSG-FRGFGIVHVNRVDNDPR--------ALGKR 199 +GT +V + + P +S R + GI AL + Sbjct: 302 DGTARWVETAVQVIGRPPFSSQDERALDAPVKLAGITQDIHQRKQAEASVQEKSAALAEE 361 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVL--- 254 + L G + + + + + H DD Sbjct: 362 KTRLRVALGAADAGVFEWSIPDDRRVWDERTQALFGVDAAPQTTGALLGHVHPDDRGHLQ 421 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 T L T ++ + + + + L++ ++ + + Sbjct: 422 DTMARVLGTPDKETCQVRYRIRRPDREDRHVQARARILRDEDGDAERLIGTYQDVTERRR 481 Query: 315 FDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + + + + G L N + L + + + T Sbjct: 482 RRQKLRRRERQFEAVFQDPNLLTGLLDLDGTLRRVNDTALSFINAGREEVVGQSFW-ETP 540 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + ++ + + ++ + + ++ Sbjct: 541 WWDHDSALQADLQEWIQRAAGGEYVSYQYQHVD---ADGLEYTIRGTIRPVTDRDGAVTA 597 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + +R++E+ L +E +++G+A++ + + ++ + ++G+ Sbjct: 598 LIASGRDVTAREDQRRELEV----LHQAVEDSTEGMAVLAGD-EYVYVDQTHADMYGFDD 652 Query: 490 ED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 ++ +L + + ++ + + +L + + + G + + + + Sbjct: 653 KEQLLGNTWRMLYGEDEIERLEKTVFPVLEEEGHW--QGLVTGQRPDGSTFPAALSLT-V 709 Query: 549 PFSSCYSLTMHDISEWKQEKNKLS 572 + T+ ++++ + K Sbjct: 710 TEAGRLVCTVRNMTDRRNRNRKRQ 733 Score = 77.0 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 44/494 (8%), Positives = 119/494 (24%), Gaps = 35/494 (7%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 + +++ I +++G + + + + + Sbjct: 514 RRVNDTALSFINAGREEVVGQSFWETPWWDHDSALQADLQEWIQRAAGGEYVSYQYQ-HV 572 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 + L I P+ R+ + G R + L+ + + + Sbjct: 573 DADGLEYTIRGTIRPVTDRDGAVTALIASG-----RDVTAREDQRRELEVLHQAVEDSTE 627 Query: 213 GHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 G + + ++Y Q K ++ T + +D ++ + + E Sbjct: 628 GMAVLAGDEYVYVDQTHADMYGFDDKEQLLGNTWRMLYGEDEIERLEKTVFPVLEEEGHW 687 Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331 Q + T + + + + ET I Sbjct: 688 QGLVTGQRPDGSTFPAALSLTVTEAGRLVCTVRNMTDRRNRNRKRQLLLTASET----GI 743 Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 + G + D + ++ D Sbjct: 744 AEWDLQAGQI--------RWDGMLRNIFGRAPESTDDFFALIHPEDRSRVRDGFDSVVD- 794 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + + + + T + E + + + Sbjct: 795 SASSWNGEFRIEDGDGRTRWIETL--VIPIFEDGEVGRLLASGTDVTERK-------ERQ 845 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L L T G+ N + + + + LFG+ + FT + N + Sbjct: 846 RKLDLALAGTDTGVLEWNLQTGEMQWDETLQDLFGHDPQTFEA--FTEIVHPNDLPDVEA 903 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNK 570 L + S + + +SLR + D++ + + Sbjct: 904 ALENMTSTGESWEGDFWLFHPEEGVARMSLRATPVHEKGEAVRVLGIATDVTAQWERQRD 963 Query: 571 LSHAKKIAEKESSH 584 L+ +++ + Sbjct: 964 LATSRERYQTLLQA 977 Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 32/398 (8%), Positives = 104/398 (26%), Gaps = 25/398 (6%) Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 + + + P +++ D + + + Sbjct: 256 RPTDAFVRDPMLWRSAAHPKDQPELPTARDLLEHGRWRGEYRVLRPDGTARWVETAVQVI 315 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 Q++ + + SA E + Sbjct: 316 GRPPFSSQDE--------RALDAPVKLAGITQDIHQRKQAEASVQEKSAALAEEKTRLRV 367 Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + F +S + + L + A L D+ Sbjct: 368 ALGAADAGVFEWSIPDDRRVWDERTQALFGVDAAPQTTGA------LLGHVHPDDRGHLQ 421 Query: 384 VMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 + R T + ++ I+ + ++ + G + + R Sbjct: 422 DTMARVLGTPDKETCQVRYRIRRPDREDRHVQARARILRDEDGDAERLIGTYQDVTERRR 481 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 ++K+ Q ++ + + +++ +G + N E+++ + F Sbjct: 482 RRQKLRRRERQFEAVFQDPNLLTGLLDLDGTLRRVNDTALSFINAGREEVVGQSFWETPW 541 Query: 503 QNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557 + S + L E I + + + ++R I+ + + Sbjct: 542 WDHDSALQADLQEWIQRAAGGEYVSYQYQHVDADGLEYTIRGTIRPVTDRDGAVTALIAS 601 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 D++ + ++ +L ++ + ++ +A ++ + Sbjct: 602 GRDVTAREDQRREL----EVLHQAVEDSTEGMAVLAGD 635 Score = 42.3 bits (98), Expect = 0.31, Method: Composition-based stats. Identities = 34/320 (10%), Positives = 77/320 (24%), Gaps = 44/320 (13%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 FD +L +D PI + + L + +D Sbjct: 53 VIDTPPEETFDRIADLAAALLD-VPIGLVTFVGDQKQWHKACIGLDAQGLGLDASFCVHT 111 Query: 366 LST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L L +++ L D A I + + + E Sbjct: 112 LDEGQRLVVEDATEDERFDDNPLVTEDPHVR-FYAGAPMITPDGHVLGTVCVLDTEPRAP 170 Query: 424 FPENMPQNGIEPEDVDTRINKRK-----------MEIEVMQLCSILEATSDGIAIINRE- 471 + + ++ +R+ E + +L +L + D + + Sbjct: 171 SERQLTGLDDLAQMGVDQLERRRRQKISAVEQGGAESDETRLNELLASLDDAVWEVRIHP 230 Query: 472 ----------GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 + N + +FG P + +R P + L L Sbjct: 231 TGSSEAEPVRHELAYVNSSEEHIFGRPTDAFVRDP--MLWRSAAHPKDQPELPTARDLLE 288 Query: 522 RQTLEKITLGSTKEEKLLSLRIII-------------KKLPFSSCYSLTMHDISEWKQEK 568 + + + + L + DI + KQ + Sbjct: 289 HGRWRGEYRVLRPDGTARWVETAVQVIGRPPFSSQDERALDAPVKLAGITQDIHQRKQAE 348 Query: 569 NKLSHAKKIAEKESSHKSDF 588 + ++ + + K+ Sbjct: 349 ASV---QEKSAALAEEKTRL 365 >gi|118581023|ref|YP_902273.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] gi|118503733|gb|ABL00216.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM 2379] Length = 1134 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 93/754 (12%), Positives = 216/754 (28%), Gaps = 59/754 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D + + +++G ++ M + D + + ++++ Sbjct: 281 IFRLDQDMNVLYANRHACESLGYSREELCRMSVFDFDPQFRREDLPNHLKKRQQRHCMTF 340 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + +G V I L F K ++ +S Sbjct: 341 EAVHRNRDGVIFPVEITSTHLEYQGEEF------LFSFARDITERKRAEQALKEQEELYS 394 Query: 206 HLHEIKKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E ++ F+ + + + + L+ + + + + + Sbjct: 395 VIFNQAPDGVVLVDAETLEFREFNDTACAGLGYSREEFARLSVADINPEYDKEWHRSHIN 454 Query: 263 TSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKES--FEYLSHRNHPSLSAYFDEGE 319 + E H N + + T+Q + L E Sbjct: 455 EIISRNYGVFETIHRHRNGSLRNMRISVRTVQIRGCRYLLSFWTDTTEQARLQEELRLRE 514 Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +D P ++ G N S ++ AP + Sbjct: 515 YYQRALLDNFPSAAWIKDREGRFLAVNRQLATFLGLASPQELVDKTIHD---VAPSALAD 571 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L + P + + G + Sbjct: 572 QNTAEDRRVLTSGRPKHDEEELPV--SGENRWFEVYISPVSID---GQVVGTVGCNWDVT 626 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPF 497 + + ++ + + ++E + D I I + + N+A ++L G E++ + Sbjct: 627 ERKKIEQNLRESEERYRRLVELSPDAIFIHSGN-RFVFMNQAAARLLGAKTPEELYGRKP 685 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYS 555 F+ + ++ + L +E + + + + ++ Sbjct: 686 LDFIHPDQREMVGQRIDRALERRDNPPIE-ELMVRL-DGSTVPVEMVSVHHTYRGKDAVL 743 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 DISE + +++ ++K+ ++H+ L+ I+G + R Sbjct: 744 AIARDISERMKIQDERVRSQKL-----ESLGLLAGGIAHDFNNILSGILGNI-SLVCSRL 797 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 P + +++ + LL ++ + + + E+ + V Sbjct: 798 DP--DDPLASRLKSCEKATIRATGLTRQLLTFAR----GGEPVRKVIDPAPLIRESATFV 851 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------ 729 + + I D + Q+ N++ NA H P GG IIIS Sbjct: 852 ---LRGTNVKGDIRMTEGLSCINVDAGQISQVLNNLIINATHSMPGGGVIIISAMNEALH 908 Query: 730 -----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + + + V+D G G+ L K P+ G+GLGL A A+ Sbjct: 909 EGNAFNLAPGDYLRITVQDQGCGIPPENLPKIFDPYFTTKR------RGSGLGLASAYAI 962 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 + + G + S GT + P H D Sbjct: 963 IRRHGGAIEVSSRVGVGTTFTLRLPAQPQVHAAD 996 Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats. Identities = 43/507 (8%), Positives = 122/507 (24%), Gaps = 45/507 (8%) Query: 87 WNIDA-HGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNT 142 W D + +E +G + + + + + + ++ + Sbjct: 29 WECDPLTLRFSHVDQEAESILGYPCRQWVEEQDFWQAHIPTDDAEQCAIQLREAAEKGES 88 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + +G ++ + LP + G ++ ++ L ++ Sbjct: 89 REFEHRMAAADGRTVWFRTIVTPLPTEGGSIRLQGV----MIDISESRQTRMLLQSSEER 144 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDVLKT 256 + G +++ L + T Sbjct: 145 FQRAMLGANDGIWDWNLLTDEVYFSPRWKEMLGYAEHELENNLDSWSYLTHPADLQATLT 204 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 + + + + + +++ + + + Sbjct: 205 LIKDYVEGRSDTFEAEFRMRHRDGHYICVLSRGLLARDDDGRGTRLVGTHVDITRQRRAE 264 Query: 317 EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPK 374 E L +D+ P+ F N+ YAN Y + Sbjct: 265 EELYLARYCLDQAPMGIFRLDQDMNVLYANRHACESLGYSREELCRMSVFDFDPQFRRED 324 Query: 375 LSDNNAIKPVM--------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L ++ + D +++ E L Sbjct: 325 LPNHLKKRQQRHCMTFEAVHRNRDGVIFPVEITSTHLEYQGEEFL--------------- 369 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLF 485 + + + ++ ++ + I DG+ +++ E N Sbjct: 370 ----FSFARDITERKRAEQALKEQEELYSVIFNQAPDGVVLVDAETLEFREFNDTACAGL 425 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 GY E+ R + ++ EI+S E I + + + + Sbjct: 426 GYSREEFARLSVADINPEYDKEWHRSHINEIIS-RNYGVFETIHRHRNGSLRNMRISVRT 484 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLS 572 ++ D +E + + +L Sbjct: 485 VQIRGCRYLLSFWTDTTEQARLQEELR 511 Score = 130 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 33/352 (9%), Positives = 89/352 (25%), Gaps = 17/352 (4%) Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291 P + + + D + + S + + + Sbjct: 52 PCRQWVEEQDFWQAHIPTDDAEQCAIQLREAAEKGESREFEHRMAAADGRTVWFRTIVTP 111 Query: 292 LQNNSKESF---EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPS 347 L + E + + ++ Y +P Sbjct: 112 LPTEGGSIRLQGVMIDISESRQTRMLLQSSEERFQRAMLGANDGIWDWNLLTDEVYFSPR 171 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + Y + S L L A ++ + A ++ Sbjct: 172 WKEMLGYAEHELENNLDSWSYLTHPADLQ---ATLTLIKDYVEGRSDTFEAE-FRMRHRD 227 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + + + G + R + ++ + L+ GI Sbjct: 228 GHYICVLSRGLLARDDDGRGTRLVGTHVDITRQRRAEEELYLA----RYCLDQAPMGIFR 283 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++++ +L NR + GY E++ R + + + R + Sbjct: 284 LDQDMNVLYANRHACESLGYSREELCRMSV---FDFDPQFRREDLPNHLKKRQQRHCMTF 340 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKI 577 + ++ + + I L + DI+E K+ + L +++ Sbjct: 341 EAVHRNRDGVIFPVEITSTHLEYQGEEFLFSFARDITERKRAEQALKEQEEL 392 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 56/573 (9%), Positives = 144/573 (25%), Gaps = 63/573 (10%) Query: 96 KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGKTTLWP 151 S + +G ++ ++ + I D ++ + +T+ + + Sbjct: 166 VYFSPRWKEMLGYAEHELENNLDSWSYLTHPADLQATLTLIKDYVEGRSDTFEAEFRMRH 225 Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 +G Y+ + L + G R G Sbjct: 226 RDGH--YICVLSRGLLARDDDGR--GTRLVGTHVDITRQRRAEEELYLARYCLDQAP--M 279 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + ++ + + ++ ++ + + L ++ Sbjct: 280 GIFRLDQDMNVLYANRHACESLGYSREELCRMSVFDFDPQFRREDLPNHLKKRQQRHCMT 339 Query: 272 QEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E H + T Q E E L ++ Sbjct: 340 FEAVHRNRDGVIFPVEITSTHLEYQGEEFLFSFARDITERKRAEQALKEQEELYSVIFNQ 399 Query: 329 CPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 P + L + N + Y + ++D N Sbjct: 400 APDGVVLVDAETLEFREFNDTACAGLGYSREE-----------FARLSVADINPEYDKEW 448 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ-NGIEPEDVDTRINKR 445 +RS I + +R + ++ + + + + Sbjct: 449 HRSHINEIISRNYGVFETIHRHRNGSLRNMRISVRTVQIRGCRYLLSFWTDTTEQARLQE 508 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQN 504 ++ + ++L+ I +REG L+ NR ++ G ++++ K Sbjct: 509 ELRLREYYQRALLDNFPSAAWIKDREGRFLAVNRQLATFLGLASPQELVDKTIHDVAPSA 568 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563 +L+ + E+ + E + + I + D++E Sbjct: 569 LADQNTAEDRRVLTSGRPKHDEEELPV-SGENRWFEVYISPVSIDGQVVGTVGCNWDVTE 627 Query: 564 WKQEKNKLSHAKKIAEK-------------------ESSHKSDFLARVSHEIRTPLTAII 604 K+ + L +++ + + + L +TP Sbjct: 628 RKKIEQNLRESEERYRRLVELSPDAIFIHSGNRFVFMNQAAARLLGA-----KTP----- 677 Query: 605 GFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNL 636 E + ++ +P E IDR+ Sbjct: 678 ---EELYGRKPLDFIHPDQREMVGQRIDRALER 707 Score = 83.9 bits (206), Expect = 1e-13, Method: Composition-based stats. Identities = 18/252 (7%), Positives = 65/252 (25%), Gaps = 21/252 (8%) Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + + + Y +E + + R Sbjct: 37 RFSHVDQEAESILGYPCRQWVEEQDFWQAHIPTDDAEQCAI--QLREAAEKGESREFEHR 94 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + ++ I + ++ G+ + ++R + ++ + + Sbjct: 95 MAA---ADGRTVWFRTIVTPLPTEGG-SIRLQGVMIDISESRQTRMLLQSSEERFQRAML 150 Query: 460 ATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYL 513 +DGI + + + + ++ GY ++ ++ + Sbjct: 151 GANDGIWDWNLLTDE----VYFSPRWKEMLGYAEHELENNLDSWSYLTHPADLQATLTLI 206 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 + + T E ++ + + T DI+ ++ + Sbjct: 207 KDYVE-GRSDTFEAEFRMRHRDGHYICVLSRGLLARDDDGRGTRLVGTHVDITRQRRAEE 265 Query: 570 KLSHAKKIAEKE 581 +L A+ ++ Sbjct: 266 ELYLARYCLDQA 277 >gi|75909433|ref|YP_323729.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75703158|gb|ABA22834.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 650 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 96/414 (23%), Positives = 181/414 (43%), Gaps = 30/414 (7%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473 I + E + E ++ + ++ E +L +++ +DG +I+ Sbjct: 238 IDLPLGGELGELILNFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 297 Query: 474 ILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 ++ N +FG+ +D++ L + L E+ + + ++TL Sbjct: 298 VILVNPTARHIFGWEGADDVVGSNVLHHLPPTVQMEITRPLYEMAAGECDSAEFRLTLNQ 357 Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + L + L S ++T+ DI+ + + KS F++ Sbjct: 358 PSNRTIRILLTTVLNLQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 403 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTPL I F E + + L E+ ++ + + +VND+LD+SK+ Sbjct: 404 NVSHELRTPLFNIKSFIETLHD-YGEDLSIEERQEFLQTVNHETDRLTRLVNDVLDLSKL 462 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESG+ + F+ V L +A+ + + QL A +K I + A +P +L + + Q+ N Sbjct: 463 ESGR-SYSFDGVDLAQAIEQTLRTYQLNAKDKGIELIQDVAPGLPLVLGNYDLLLQVLAN 521 Query: 711 ILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 ++ NA+ FTPSGG+I I T + +V + V DTG+G+ + + F + Sbjct: 522 LVGNALKFTPSGGKIAIRTYVLHTKPNSPNQPTQVRIEVSDTGIGIAPEDQQAIFDRFFR 581 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + N + EGTGLGL + + +V+ + K + S GT L++ P Sbjct: 582 VEN-RVHTLEGTGLGLSIVRNIVERHRSKVNLVSEVGVGTTFWFDLILFEDEAP 634 >gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus denitrificans K601] Length = 829 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 112/634 (17%), Positives = 218/634 (34%), Gaps = 35/634 (5%) Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVS 241 L + +H+ + +E + Q P P ++ Sbjct: 207 ADTSGARILLVRSDGHVLAHVGPGADAPGASLREHPRFHAFQGAPRGSFGPLRVREDLTL 266 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 E+ T+ + + L + N++ Sbjct: 267 GAWHRLDAYPLTALVEQPYATTTARWLRALRGPLLFMALATVLIGLMTRSAWRNARAREA 326 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360 + + E F G + + NP + LT Sbjct: 327 AQLKLDEIR--KATAQREQELSILFKSVKELIFRTDAQGVIRFVNPRWRQLTGQVPAAA- 383 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L +++ + ++ + + Sbjct: 384 -----RGRRLSDIVEPESSPTVAALFQA--GGSSGWRRSKACLRGPSGKTQVLEITVMPL 436 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 A + + G + ++K++ ++ +LE+ + + + +G +++ N A Sbjct: 437 AGRDGQPYGYAGSAVDITALDYAQKKLQHQLALTERVLESNPLPMCLTDVQGRLVTVNAA 496 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 G L + L + ++L T+ + + Sbjct: 497 WESFMGVSRSQALGRLNRDILPAAQAQAYDARTEQLLREG--GTVRYEERLPRADGSMRD 554 Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++I L + + DI+++ + A++ S KS+F+A +SHE+ Sbjct: 555 VQITKVLLQSAQGEPMGVLVNKLDITDFLAA-------RYKAQEASRTKSEFVANISHEL 607 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL +I+GFSE+ +Y I +G +L +VNDLLDISKIES Sbjct: 608 RTPLQSILGFSEL---GMVRARQYEKYAAMFQDIHAAGQRMLGLVNDLLDISKIESTVGA 664 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715 F + + + + + +Q+ K + +R +P + D Q+A N+LSNA Sbjct: 665 FRFARNDVRDLLEDVAAELQMLLERKGLTLRLDL-GRVPLVSKVDSTRFAQVARNVLSNA 723 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 + F+P GG I +S + ++++VRD G G+ ELE F Q ++ GTG Sbjct: 724 VKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAELEAVFDAFVQSSKTRD-ESGGTG 782 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL + + +V A+ G + + P GT+ I+ P Sbjct: 783 LGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLP 816 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 27/246 (10%), Positives = 71/246 (28%), Gaps = 10/246 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-- 142 + DA G ++ ++ + G G RL D+ + + + + L + + Sbjct: 355 LIFRTDAQGVIRFVNPRWRQLTGQVPAAARGRRLSDIVEP---ESSPTVAALFQAGGSSG 411 Query: 143 WYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRL 200 W G + I + +P+ R+ + G+ G + + L Sbjct: 412 WRRSKACLRGPSGKTQVLEITV--MPLAGRDGQPYGYAGSAVDITALDYAQKKLQHQLAL 469 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDDVLKTEKY 259 ++ + + + V+ + + + + L + + Sbjct: 470 TERVLESNPLPMCLTDVQGRLVTVNAAWESFMGVSRSQALGRLNRDILPAAQAQAYDART 529 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L E ++ +E + + + LQ+ E L ++ + Sbjct: 530 EQLLREGGTVRYEERLPRADGSMRDVQITKVLLQSAQGEPMGVLVNKLDITDFLAARYKA 589 Query: 320 NLTPET 325 T Sbjct: 590 QEASRT 595 >gi|218778045|ref|YP_002429363.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfatibacillum alkenivorans AK-01] gi|218759429|gb|ACL01895.1| signal transduction histidine kinase, nitrogen specific, NtrB [Desulfatibacillum alkenivorans AK-01] Length = 989 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 111/785 (14%), Positives = 250/785 (31%), Gaps = 87/785 (11%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 + D G + +S PK +G +++ + ++ D + + L + Sbjct: 232 YRTDLKGRITWVSPSTPKLLGYEMEEVLHRDIKNLFYFNPADRDKFLAKLNVTGKVTDAE 291 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 L +G+ + + + +G G R + Sbjct: 292 VKLKHKDGSP--IWVSTNSAYYKDAKGAVAGVEG--SFRDVSQRKRRMEEIARYQDRLEE 347 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPP------------HLRMKNKVSSLTEYYAHKDDVL 254 + E + ++KY + S + + EY +K + Sbjct: 348 MVEERTRALVESEQKYRALFENSGNAIFVLAKDSVVDCNAKAAEVFGVPQEYLINKHPLA 407 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----------- 303 + + L E+ ++ + + + +S L Sbjct: 408 YSTPRQPGGEDSLILGEKLLARAFEGEEFFLEWRYQRPDGSIFDSEVILNPVSIGGVSFV 467 Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361 + + ++ + ++ F + Y NP+ + D++ Sbjct: 468 IGTVADITERKQAEAQRSMLIKILESTSDMVSFSTPDMQITYINPAGRRILGLDKGDELP 527 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + T +S A V + + ++ + Sbjct: 528 LVKDVMTPEAFDIISREGAPAAVEHGHWSGET--------ALAMEDGTEIPVSQVIMSHK 579 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + I + + + ++E L +++++ + ++ +G I N Sbjct: 580 DAEGRVENFSTIIRDISGPKKTEEELERLRDFLSAVIDSMPSVLVGLDEQGRITRWNTKT 639 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 +L G + + + N + + E + + K + + + Sbjct: 640 EELLGKTSAQVRGRLLSEVFPHN--PDILRMVDEAIENEKVSERLKAPIQFQGILRFWDV 697 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 + + + D++E + + + ++K+ A ++HEI PL Sbjct: 698 TVYPLSESAMKGAVIRVDDVTERVRLEEMMIQSEKML-----SVGGLAAGMAHEINNPLA 752 Query: 602 AIIGFSEVIKNQRFGPLGN---------------PRYIE------YANYIDRSGNLVLDI 640 II +V++ + L RY+E I SG I Sbjct: 753 GIIQNVQVLEKRLGTGLSKNHNVAEEAGTSMDAIARYLEKRDLLRVMQAIRESGGRAAAI 812 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK------RILIRTSFANNI 694 VN++LD S+ K + F P L + + + I L + K +I I+ + + + Sbjct: 813 VNNMLDFSR----KGDSAFLPQDLCQVMDQTIELASSDFDLKKRYDFRQIKIKKDYQDCM 868 Query: 695 PRILADLRSVKQIALNILSNAIHFT------PSGGQIIISTTHTSNEEVILRVRDTGVGM 748 P+I + V+Q+ LN+L NA + +I I + +++ + V D G GM Sbjct: 869 PKIRCEKTKVQQVILNLLQNAAQAMAGQWDDDNPPEIAIRI-FSKDDKACIEVADNGPGM 927 Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEII 807 ++ +PF G GTGLGL ++ +V + + G ++ S P KG I Sbjct: 928 DESVRKRVFEPFFTTK----EIGVGTGLGLSVSYFIVTENHNGTMHVESAPGKGAKFTIC 983 Query: 808 FPLYD 812 P + Sbjct: 984 LPAEE 988 Score = 93.9 bits (232), Expect = 1e-16, Method: Composition-based stats. Identities = 32/268 (11%), Positives = 80/268 (29%), Gaps = 8/268 (2%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D+ V S G + + + +G L L +D Sbjct: 93 ADRSQCLHLVSSSGRYSSLDGRHARVPFGAYKIGLIGSGALPDFLTNEVTTDPRV-HNHE 151 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + RL + LA+ +F ++ + Sbjct: 152 WAKELGLQSFYGHRLLSDDGRVSGVLAVFSRHKIPPEEFTILRSLAVTATHAINAAYTEN 211 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ +L ++ + D + +G I + + KL GY +E++L + N Sbjct: 212 ALKESEARLRNVFDNMQDCFYRTDLKGRITWVSPSTPKLLGYEMEEVLHRDIKNLFYFN- 270 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDI 561 P+ + +L ++ + K+ + + + + D+ Sbjct: 271 PADRDKFLAKLNVTGK--VTDAEVKLKHKDGSPIWVSTNSAYYKDAKGAVAGVEGSFRDV 328 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589 S+ K+ +++ + E+ ++ L Sbjct: 329 SQRKRRMEEIARYQDRLEEMVEERTRAL 356 >gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo] gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo] Length = 688 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 168/377 (44%), Gaps = 17/377 (4%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++ + + + D + + I + S+ K Sbjct: 190 ATRTSELRQNRERFRDFVNSVGDCLWETDSSYRINYVSEVSSE-----KASFYGKKIQTI 244 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558 LE + I + + + + LS+ Y T+ Sbjct: 245 LEGESVCHQL----VIAMDARQPIRDLEWRYNADKGIWLSISGAPFYDLDGRFLGYRGTV 300 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DIS+ K +L A+ AEK + KS FLA +SHEIRTPL AI+G +V+ ++ Sbjct: 301 KDISQSKLRYLELKRARSEAEKANQAKSQFLATMSHEIRTPLNAILGLIDVLLSKCTDKN 360 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 ++ S L+L I++D+LD+SKIESG++ L + V++ + VS + QL Sbjct: 361 NTD----VLRMMESSAELLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQLV 416 Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737 ANEK + + A++IP +I D + QI N++ NA+ FT +G +I + + + Sbjct: 417 ANEKGLKLSLDLADDIPHQIHTDATRLSQILFNLVGNAVKFTEAG-EIRVKVIRQPGQTL 475 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 ++RV DTG+G+ LEK KPF Q S R G+GLGL ++K + G + S Sbjct: 476 VIRVTDTGLGIDESVLEKVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQ 535 Query: 798 PAKGTLIEIIFPLYDTS 814 +G+ + P+ ++ Sbjct: 536 RHQGSEFTLTLPIIHSA 552 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 20/144 (13%) Query: 86 TWNIDAHGYLKEISE---ELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQN 141 W D+ + +SE E G ++ G V L I + + Sbjct: 214 LWETDSSYRINYVSEVSSEKASFYGKKIQTILEGES---VCHQLVI--------AMDARQ 262 Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201 + + + + ++ P Y + F G+RG V KR Sbjct: 263 PIRDLEWRYNAD---KGIWLSISGAPFYDLDGRFLGYRG--TVKDISQSKLRYLELKRAR 317 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225 + ++ K + + Sbjct: 318 SEAEKANQAKSQFLATMSHEIRTP 341 >gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM 319] gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM 319] Length = 590 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 25/365 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ +R+G IL TN + + Sbjct: 249 ALNQEKEQLSSILSSMADGVITFSRDGSILITNPPAEHFLQTWYYE---QDVNNQQVPEL 305 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P+ + H ++ + ++ E G T + L + + D+SE + Sbjct: 306 PANVVHLFQTVVETETERSAELKIQGKT----WVILMSPLYNQTKIRGAVAVLRDMSEER 361 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + + E Sbjct: 362 KL--------------DKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKE 405 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VN+LLD++++E+G + LH E V++ E + Q A EK I Sbjct: 406 IAQVIYDESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIK 465 Query: 686 IRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + + + D ++Q+ N++ NAI T G++ + + + E+ L V+DT Sbjct: 466 LSLNGKVEDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDT 524 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 525 GAGIPKEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTF 584 Query: 805 EIIFP 809 I P Sbjct: 585 FIKLP 589 >gi|218779864|ref|YP_002431182.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218761248|gb|ACL03714.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1177 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 109/701 (15%), Positives = 241/701 (34%), Gaps = 52/701 (7%) Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE-FSGFRGFG 182 + +D GD + + G L +P+ ++ + G+ F Sbjct: 114 VYAVDGGGRDGDAILPNTPYNSPHPQLVSNGEPLQMPV-VSKRLYTDESGTWLKGYAPFF 172 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 + + ++ + Sbjct: 173 SSQGE-------------VAGILAMDVAASSIIARQRSFLKTALGVFGLSVVLAGFLGLI 219 Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302 + A + L + + S E+ L + Sbjct: 220 MGRKLAAPIEGLTRAVRAISQGDLSHRAEETAKDETGELARAFNAMSEKLSRAEDKIQ-- 277 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDI 360 + + D+ E+ + + F + + + N F + YK+ ++ Sbjct: 278 IEVQERKEAQDALDQSEDNYQRLYENAHVGLFKTRFENDGITACNTRFARMLGYKTSQEV 337 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L+ P + A L + + +++ + Sbjct: 338 LG------LILGPDRYADPADYQ-RLRERLASLEDVEHFETLFKKVDDSAFWIRLSARLT 390 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 G+ + + +++ + I E +G+ EG +S N A Sbjct: 391 DQGE----SVEGMAIDFTTEKTAIEQIKSAEKKFRGIFENAQEGLFQCASEGSFISVNPA 446 Query: 481 VSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 ++++ GY L + + + +P + + +E+ + + K+ L Sbjct: 447 MARILGYDSPVELLQKLGPGVREIFFSPEEYSDFRSELEARGK--VAGMEVQFNKKDGSL 504 Query: 539 LS--LRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + K + ++ DI E KQ + + K A + K+ FLA +SH Sbjct: 505 AWGSISATLVKNTETGALMLEGSLEDIEERKQHEAAILA-KNQAVAANQEKNRFLAALSH 563 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTP+TAIIG +E++ + +Y + + +L +V+D++DIS++++G+ Sbjct: 564 EMRTPMTAIIGMTELLNETGL----TQQQAQYIKLMKSANEQLLSLVSDVMDISRVDAGR 619 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713 + L P +L E V +A + A+EK + + S + P +L D +KQ+ N++ Sbjct: 620 LKLETIPFNLLELVEKACETMAEKAHEKNLELACSVSPKTPIHLLGDPYRLKQVLNNLMQ 679 Query: 714 NAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 NA+ FT G +++++ + + + V DTG+G+ + L + + Sbjct: 680 NAVKFTEKG-EVVVTVRDAAEGDKKDGQAVIEFCVSDTGIGIPSKRLASLFDHMAKDNDV 738 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GTG+GL +++ +V+ G F + S +G+ Sbjct: 739 DFHHYGGTGVGLSISRKLVEMMKGDFTVSSKLEQGSTFCFT 779 Score = 43.1 bits (100), Expect = 0.21, Method: Composition-based stats. Identities = 45/396 (11%), Positives = 106/396 (26%), Gaps = 42/396 (10%) Query: 32 NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91 N + S+ E+ Q Q+ S NY F + Sbjct: 263 NAMSEKLSRAEDKI-QIEVQERKEAQDALDQSEDNY------QRLYENAHVGLFKTRFEN 315 Query: 92 HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + + +G + +++G+ L D L ++ + +T Sbjct: 316 DG-ITACNTRFARMLGYKTSQEVLGLILGPDRYADPADYQRLRERLASLEDVEHFETLFK 374 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 ++ + I L+A + + G ++ K+ F + E Sbjct: 375 KVDDSAF--WIRLSAR-LTDQGESVEGM-AIDFTTEKTAIEQIKSAEKKFRGIFENAQEG 430 Query: 211 KKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 SV I SP + + K+ + + L Sbjct: 431 LFQCASEGSFISVNPAMARILGYDSP---VELLQKLGPGVREIFFSPEEYSDFRSELEAR 487 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + + F+ + + ++N + + Sbjct: 488 GKVA-GMEVQFNKKDGSLAWGSISATLVKNTETGALMLEGSLEDIEERKQHEA------- 539 Query: 325 TVDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 + + AN FL ++ + G++ LL+ L+ A Sbjct: 540 ---------AILAKNQAVAANQEKNRFLAALSHEMRTPMTAIIGMTELLNETGLTQQQAQ 590 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 ++ ++ ++ + + I L + IP Sbjct: 591 YIKLMKSANEQLLSLVSDVMDISRVDAGRLKLETIP 626 >gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 832 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 177/385 (45%), Gaps = 41/385 (10%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +++ + + I++ +DG+ +++ G I TN A+ +LFG ++ K F Sbjct: 247 ATSELQDTLTYMEVIMDNLADGLLVVDINGKISVTNPALGELFGVTENELRGKDIRTFFP 306 Query: 503 QNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556 + L E++ + E G K K ++ I + + Sbjct: 307 EE-----MTALFELVKGCEHEVYSSEIELTGR-KTGKAVATPIHKMDEGDTPNICLGAVI 360 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---- 612 + DI+ K+ + K+DF++ VSHE+RTP+T+I+GF+++IK Sbjct: 361 LVRDITYEKEV--------------DNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEK 406 Query: 613 ---------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + + + I G + +++ND+LDI+K+ESGK++ P+ Sbjct: 407 SVFPVCNAPDKKTERAINQVKDNIGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPID 466 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + E + ++ + + + NIP I D V Q+ +N++SNA+ FT SG Sbjct: 467 ISEVIETSVQTTTPLWKPQDLQMVVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTASGS 526 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 I T + +E+++ V DTG G++ + +K + F Q ++ + +GTGLGLP+ K Sbjct: 527 --ITCTARSHADEIMVSVSDTGSGISPEDQKKIFQRFKQAGDTLTGKPKGTGLGLPICKQ 584 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 +VD + G+ ++ S +G+ Sbjct: 585 IVDHHKGRIWVDSKLGEGSSFHFTL 609 >gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena variabilis ATCC 29413] Length = 646 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 105/519 (20%), Positives = 198/519 (38%), Gaps = 25/519 (4%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAGGL 366 + + + P +V+ Y N L + L Sbjct: 137 RSQEQLHDSQKFIERIAETTPGILYVHDLVEKRNVYINGKVGNLLGHTPQTIQNLGKEFL 196 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 T + L + D I R+ + + N Sbjct: 197 ITFMHPEDLVRLPQVFQQFDSAKDGDIIEHEYRMR--HADGGWCWFFSRNSVFMRNSDGS 254 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLF 485 G + + + ++ + A + I + ++G + T ++++ Sbjct: 255 PRQIVGTAFDITARKQAEEELRSSNERFRLAAAAVNSLIYEWDIKKGTVTRT-EGLTRIL 313 Query: 486 GYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 GY VE+ + + + + + T E + + + Sbjct: 314 GYSVEEATPNIEWWQEQIHPDDQDFLVEQFQNPPVNQTHYTFEYRIRHKNNQYLYVLDQG 373 Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSH 594 II + + DIS+ K + + A+ AE + K +F+A VSH Sbjct: 374 IITRDENGQPVRVVGSATDISDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSH 433 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 ++R+PL AI+G+S++++ ++ L + I+R+ ++ DLLD+S+I GK Sbjct: 434 DLRSPLNAILGWSQLLRTRQ---LDESTFTRALETIERNAQSQSKLLEDLLDMSRILRGK 490 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + L F V L + AI A K I +++ +IP I D+ + Q+ N+LSN Sbjct: 491 LQLEFCLVELPAIIGVAIETAYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSN 550 Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 AI FTP GQI + ++T + E + V DTG+G+ + L + + Q Q + G Sbjct: 551 AIKFTPPEGQITVQLSYTDS-EAHITVIDTGIGIKSEFLPYVFERYRQAD--CQHKQHGL 607 Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812 GLGL +A+ +++ + G ++ S +GT I PL+ Sbjct: 608 GLGLAIARYLIELHGGAIHVNSLGEGQGTTFTIKLPLHQ 646 >gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101] gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101] Length = 571 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%) Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++EI + + L +IL++ G+ +R+ +L N K+FG E I K Sbjct: 226 AEQLEITMERFKNKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 ++ + E + + K+L +R I P Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ K+ + + +S F+A +SHE++TPLT+I GF+E ++ Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVADISHELKTPLTSIKGFAETLR---- 377 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++ + ID + + ++ D+L + +IE + + E ++DE + + L+ Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + I +N ++ D KQ+ LN++SN++ +T GG++ + ++ + Sbjct: 437 NDQAKKKGVEIFLDTHSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +IL + D G+G++ +L + + F ++ ++ GTGLGL + K +V G+ + Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554 Query: 796 STPAKGTLIEIIFPL 810 S GT I I P+ Sbjct: 555 SELGVGTKIVITIPI 569 >gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii NCIMB 8052] Length = 669 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 106/527 (20%), Positives = 206/527 (39%), Gaps = 60/527 (11%) Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + + ++S GN+ N + Y + + + + + Sbjct: 17 LQIYEAAIRNANDIIILFSSQGNILEVNRKAVDTYGYTEAELLSKN------IFELRNRE 70 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + + ++ + + S + + I + Sbjct: 71 RIELAIMQFEKAKSGDVEFETIHF---KSDGTSFPVEVKSIGIE--ISNDRFVLSIIRDI 125 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 + ++ ++ L S++E T D I +GII S N ++GY E+++ K Sbjct: 126 SNRMKSEAEIRG----LASLVENTEDAIIGKTLDGIITSWNIGAENIYGYKKEEVIGKHI 181 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556 ++ + + + +I + + + + K +L+ + I + + + Sbjct: 182 SIIIPDEKINDFYEIIKKIKNGE--RVRGFESKRRKKNGQLIDVSITVSPIYDFEGNLIG 239 Query: 557 ---TMHDISEWKQEK----------------------------NKLSHAKKIAEKESSHK 585 DI+E K+ + +L AK+ A+K + K Sbjct: 240 ASNITRDITENKKVEKELRDKYEEISALYEELIAIEEELRSNYQELEKAKEEADKANKAK 299 Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645 S+FLA +SHEIRTP+ IIG +++K N EY + + S L+L I+N +L Sbjct: 300 SEFLANISHEIRTPMNGIIGIIDLLKVTEL----NNNQKEYLDMLSNSSRLLLGILNTIL 355 Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704 DISKIESGK L +P ++ + + + + ++K + + I ++ D + Sbjct: 356 DISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPYINFDLIGDEIRL 415 Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH--TSNEE--VILRVRDTGVGMTNYELEKAMKPF 760 Q+ +NI++NAI FT G QI+ T+N + + V+DTG+G+ K F Sbjct: 416 NQVLINIINNAIKFTEMG-QIMFKVRKLNTTNNKLTLEFSVKDTGIGIKEEFKNDIFKKF 474 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 Q + + +GTGLGL ++K + G + S KG+ Sbjct: 475 IQQDMTYTKKYDGTGLGLAISKDIAKLMNGDIWFESIENKGSTFYFT 521 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 5/108 (4%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150 G + + G ++IG + + I+ I +K G ++ Sbjct: 155 DGIITSWNIGAENIYGYKKEEVIGKHISIIIPDEKINDFYEIIKKIKNGERVRGFESKRR 214 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 G + V I ++ PIY G I + + Sbjct: 215 KKNGQLIDVSITVS--PIYDFEGNLIGASN--ITRDITENKKVEKELR 258 >gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506] gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506] Length = 1290 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 131/704 (18%), Positives = 244/704 (34%), Gaps = 61/704 (8%) Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP-IYSRNREFSGFRG-------F 181 I +L+ +N + + T + +P + LP I+ R G RG Sbjct: 487 EGEIAVILRSRN----EQIELEVRDTGIGIPAE--ELPQIFERFHRVQGARGRTYEGSGI 540 Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241 G+ V + I + ++ D + Sbjct: 541 GLSLVQELVRLHDGTISASSIVDQGTSFIVSIPTGCDRSVGDRINATRTLTSTATGATPY 600 Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 + L E ++ S E + + + + Sbjct: 601 VEEVLRWLPEPDLGGETLDARSANSDSGLETTKIGFQADSLQAQNPKSKIVLADDNADMR 660 Query: 302 YLSHR--NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 R + +G + P + Sbjct: 661 NYVKRLLSQQYEVEAVKDGAAALAAIRGQLPDLVL---------------------TDVM 699 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + G L + + ++L +R+ ++ ++ L F E Sbjct: 700 MPEVDGFELLRELRANPQTKELPIILLSARAGE----ESRIEGLEAGADDYLIKPFSARE 755 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + N+ + E +R+ E QL S+L SD +++RE L N Sbjct: 756 LLARVEANLKMAQLRQEATRREQAQRRVAEKAKEQLESVLSTISDQFLVLDREWRYLYVN 815 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 V + G E +L + + + + + ++ + E + Sbjct: 816 DRVMETVGLEREALLGRSVWEVFPDVVGTEFDRQIQQAIAQQIPAHFEYYYST---WNRW 872 Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLAR 591 ++ + +I++ K+ + + H A+ AE+ + K +FLA Sbjct: 873 FENHAYPSP----EGITIFITEITDRKRAEQEREHLLAREQAARAEAERANRVKDEFLAI 928 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651 VSHE+R+PL I+G+S +++ Q+ P + + N I R+ L +++ DLLD+S+I Sbjct: 929 VSHELRSPLNPILGWSTLLQTQKLNP---AKTAQALNAIARNARLQAELIEDLLDLSRIL 985 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 GK++L+ P L + A+ V+L A K I I T F +I +L D ++Q+ N+ Sbjct: 986 RGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNL 1045 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNAI FTP GG + I + + V DTG G+ L + F Q ++ + Sbjct: 1046 LSNAIKFTPEGGLVDIQLE-RCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKF 1104 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814 G GLGL + +V+ + G S +G + PL +S Sbjct: 1105 GGLGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLPLMQSS 1148 Score = 261 bits (667), Expect = 4e-67, Method: Composition-based stats. Identities = 97/569 (17%), Positives = 190/569 (33%), Gaps = 59/569 (10%) Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347 G + S+++ P L+ + PI + + L N + Sbjct: 17 AGGGEMGSLMRSYDWSKTPLGPVEQWPQSLRSALSICLNSRFPIAIY-WGSDCLLLYNDA 75 Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR-TCIAASARLHTIQWN 406 + + K + G + S+ + + +H + Sbjct: 76 WRPIVGDKHPWSLGRPG---REVWPEIWSEIGPEFESVFRTGEGIFHHDELLAMHRFGYT 132 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------------- 452 E TF P + + + E + ++ EV Sbjct: 133 EECFFDYTFNPIQGEGGEIDGILNIVSETTYRVLNDRRARLLREVASKTGTAKTTEEACK 192 Query: 453 QLCSILEATSDGI-----AIINREGIILSTNRAVSKLFGYPV------------EDILRK 495 + L + I +I+ EG + FG+ +D Sbjct: 193 LMAEALRSDPADIPFSLLYLIDLEGRYAHLSSGTQ--FGWDEHIAPAMVDLNAGDDPNGW 250 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDL----RQTLEKITLGSTKEEKL----LSLRIIIKK 547 P + P +++ +T L E + L + + + + + Sbjct: 251 PIARSVRTAQPQPIDNLVTRFGKLPGSPWPEPPQEAMVLPIAVTGQAKILGVLVAVASPR 310 Query: 548 LPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 Y I+ + + + + K+ F + VSHE RTPL Sbjct: 311 RRLDDRYRDFFAQITGQIATAIANARSYEEERRRAEQLAELDRAKTVFFSNVSHEFRTPL 370 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 T ++G E + + + + I R+ + +VN LLD S+IE+G++ ++ Sbjct: 371 TLMLGPVE----EALQATQDAQQRDRLELIHRNALRLQKLVNTLLDFSRIEAGRIEAVYQ 426 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 P L ++ + + + +R D ++I LN+LSNA +T Sbjct: 427 PTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLPEPTYVDREMWEKIVLNLLSNAFKYTF 486 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 G +I + NE++ L VRDTG+G+ EL + + F ++ ++ EG+G+GL L Sbjct: 487 EG-EIAVILRSR-NEQIELEVRDTGIGIPAEELPQIFERFHRVQGARGRTYEGSGIGLSL 544 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + +V + G S +GT + P Sbjct: 545 VQELVRLHDGTISASSIVDQGTSFIVSIP 573 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 56/485 (11%), Positives = 120/485 (24%), Gaps = 41/485 (8%) Query: 82 TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141 + W D L ++ +G+ +G +V + + + + Sbjct: 59 PIAIYWGSD---CLLLYNDAWRPIVGDKHPWSLGRPGREVWPEIWSEIGPEFESVFRTGE 115 Query: 142 T--WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 + + G D PI E G RV ND RA R Sbjct: 116 GIFHHDELLAMHRFGYTEECFFDYTFNPIQGEGGEIDGILNIVSETTYRVLNDRRARLLR 175 Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 + + + + E P L + L YAH + Sbjct: 176 EVASKTGTAKTTEEACKLMAEALRSDPADIPFSLL----YLIDLEGRYAHLSSGTQFGWD 231 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEG 318 + L +D + + + + + N + P A Sbjct: 232 EHIAPAMVDLNAGDDPNGWPIARSVRTAQPQPIDNLVTRFGKLPGSPWPEPPQEAMVLPI 291 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + + F +T + + + + Sbjct: 292 AVTGQAKILGVLVAVASPRRRLDDRYRDFFAQITGQIATA-----------IANARSYEE 340 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L DR + L + P E+A Q ++ Q Sbjct: 341 ERRRAEQLAELDRAKTVF---FSNVSHEFRTPLTLMLGPVEEALQATQDAQQRDRLELIH 397 Query: 439 DTRINKRKM--------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 + +K+ IE ++ ++ + T + + G+ S Sbjct: 398 RNALRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCP 457 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKL-LSLRIIIKK 547 + + + + +LS + T E + ++ E++ L +R Sbjct: 458 PLPEPTYV------DREMWEKIVLNLLSNAFKYTFEGEIAVILRSRNEQIELEVRDTGIG 511 Query: 548 LPFSS 552 +P Sbjct: 512 IPAEE 516 Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats. Identities = 22/240 (9%), Positives = 60/240 (25%), Gaps = 14/240 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D +++ + +T+G ++G + +V + + Q Sbjct: 805 LDREWRYLYVNDRVMETVGLEREALLGRSVWEVFPDVVGTEFDRQIQQAIAQQIPAHFEY 864 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + A P G F + + L + Sbjct: 865 YY----STWNRWFENHAYP------SPEGITIF--ITEITDRKRAEQEREHLLAREQAAR 912 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT--EKYPLLTSEE 266 + + V+ E I S + P + + L + + + Sbjct: 913 AEAERANRVKDEFLAIVSHELRSPLNPILGWSTLLQTQKLNPAKTAQALNAIARNARLQA 972 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326 + + D I + + + L + + + E + E + Sbjct: 973 ELIEDLLDLSRILRGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVL 1032 >gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 507 Score = 329 bits (844), Expect = 1e-87, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 215/496 (43%), Gaps = 16/496 (3%) Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + +E E ++ F + GN Y +P+ T Y++ + + + Sbjct: 23 ANKKIEEIEEFNKLHIENLNDVIFSINEQGNFTYISPAIEDFTGYRAEEVMGTSFM--QY 80 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + L + L + + + N + + + + Sbjct: 81 IHPDDLPGLLQDIDLTL---EGEHKPY---MFRVVSKTGNITYVHTSS-RGILKNGKVVG 133 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 NGI ++ + ++ + + L+ I +I+ + I N+ L GY Sbjct: 134 INGIMVNIAQLKVIEFELMKQKEKAQHYLDVAGVAIIVIDNDHRISLVNKKACGLLGYKE 193 Query: 490 EDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++L + + + + L E K+ KL S + K Sbjct: 194 HELLNRNWFEMVVPEEIRDSVAQTFTFSCSENALSTPFECAINTKEKQNKLCSWKCTQLK 253 Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + Y L DI+E KQ + L +AK +AE + KS+F+A +SHE+RTPL AIIG Sbjct: 254 DENGNTNGYILAGEDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAIIG 313 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 FSE++ ++FG L N + +Y N I SG +L+I+N +L+ISKIESG + ++++ +SL Sbjct: 314 FSEILIEKKFGDL-NDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLG 372 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + + + ++ ++ ++ NI I+ D+ V++ L+++ NAI F+ + Sbjct: 373 DLIEDLKEDIKEKLPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHV 432 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 +S + +V D G+G+T ++++ KPF Q+ S G G+GL + K + Sbjct: 433 EVSLESVDE-MIAFKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIA 491 Query: 786 DANMGKFYIFSTPAKG 801 + + G I S KG Sbjct: 492 ELHGGGLAIKSELEKG 507 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 23/246 (9%), Positives = 63/246 (25%), Gaps = 7/246 (2%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 ++I+ G IS + G A +++G + DL Sbjct: 45 IFSINEQGNFTYISPAIEDFTGYRAEEVMGTSFMQYIHPDDLPGLLQDIDLTLEGEHKPY 104 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204 + G YV + +N + G G + + +V K + + Sbjct: 105 MFRVVSKTGNITYVHTSSRGIL---KNGKVVGINGIMVNIAQLKVIEFELMKQKEKAQHY 161 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-- 262 + + + + + + ++ +++ + Sbjct: 162 LDVAGVAIIVIDNDHRISLVNKKACGLLGYKEHELLNRNWFEMVVPEEIRDSVAQTFTFS 221 Query: 263 -TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321 + S P + +T L++ + + Y+ + +E Sbjct: 222 CSENALSTPFECAINTKEKQNKLCSWKCTQLKDENGNTNGYILAGEDITERKQVEEALLN 281 Query: 322 TPETVD 327 + Sbjct: 282 AKHMAE 287 >gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM B1551] gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM B1551] Length = 590 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 25/365 (6%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E QL SIL + +DG+ +R+G IL TN + + Sbjct: 249 ALNQEKEQLSSILSSMADGVITFSRDGSILITNPPAEHFLQTWYYE---QDVNNQQVPEL 305 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P+ + H ++ + ++ E G T + L + + D+SE + Sbjct: 306 PANVVHLFQTVVETETERSAELKIQGKT----WVILMSPLYNQTKIRGAVAVLRDMSEER 361 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + + E Sbjct: 362 KL--------------DKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKE 405 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A I + +VN+LLD++++E+G + LH E V++ E + Q A EK I Sbjct: 406 IAQVIYDESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIK 465 Query: 686 IRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 + + + + D ++Q+ N++ NAI T G++ + + + E+ L V+DT Sbjct: 466 LSLNGKIEDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDT 524 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G G+ +L + F + ++ GTGLGL +AK +V+A+ G + S +GT Sbjct: 525 GAGIPKEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTF 584 Query: 805 EIIFP 809 I P Sbjct: 585 FIKLP 589 >gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata E-37] Length = 886 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 112/581 (19%), Positives = 214/581 (36%), Gaps = 31/581 (5%) Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 + L + L + + + + + Sbjct: 32 IVVLGLEVPRQLARLDESAAENVQWTIGQAETEVIALELAAAHAISDPDDPAGLDEVRLR 91 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359 F+ R A E E ++ + ++ S DD Sbjct: 92 FDIAYSRIETLQRAKVLEELRSGDEVDNELTAAV-----------DFRDKWVSVIDSPDD 140 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 + A L D L R + IA AR+ ++ + + Sbjct: 141 VLRAALPDLL-------DAAQEVRTDLRRLALSGIAFFARVGDMRREEIINTLFSIGLMT 193 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 A + + + + ++ +I+ + D + ++RE I+ N Sbjct: 194 IALVGILLILISAVLRLARQREGEAQANFETRRRMETIISTSLDAVVAVSRENRIIEWNG 253 Query: 480 AVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKE 535 A ++FGY + + + + + ++ L+ + + + K+ Sbjct: 254 AAERVFGYTRAEAIGTDMPTLIVPPHFREMHRSGMSRYLNDGEPRVIGRGIVQLEAMRKD 313 Query: 536 EKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + + + + K + + + DIS+ + L A+ A K++ LA +S Sbjct: 314 GTVFPVDLSLAKANSPTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMS 373 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL I+G E+++ Y I +S ++L VN++LDIS++++G Sbjct: 374 HEMRTPLNGILGTLELLEADSLPAED----QRYLRIIRQSSEILLGHVNEVLDISRLDAG 429 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNIL 712 KM L L + E + A + L+ + + +D ++QI LN++ Sbjct: 430 KMTLRKTRFDLVALLEEIVESQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLV 489 Query: 713 SNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 SNAI FT +GG+I+I S ++ LRV DTGVG+ +L + F I +S R Sbjct: 490 SNAIKFT-AGGRIMIEADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRN 548 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 GTGLGL +++ + A G+ S P G++ + PL Sbjct: 549 TGTGLGLSISQRLATALGGELGAESEPGDGSVFWLRLPLAP 589 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 23/264 (8%), Positives = 59/264 (22%), Gaps = 15/264 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW--- 143 + + E + + G + IG + + H + + L Sbjct: 242 VSRENRIIEWNGAAERVFGYTRAEAIGTDMPTLIVPPHFREMHRSGMSRYLNDGEPRVIG 301 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 G L + P+DL+ S E + +R + Sbjct: 302 RGIVQLEAMRKDGTVFPVDLSLAKANSPTGEI----FVAFLRDISDRVRSDEALRRARDR 357 Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 + K +V + I + + ++L Sbjct: 358 AVAGEKQKAELLAVMSHEMRTPLNGILGTLELLEADSLPAEDQRYLRIIRQSSEILLGHV 417 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 +L + T ++ + + ++ L+ R Sbjct: 418 NEVLDISRLDAGKMTLRKTRFDLVALLEEIVESQADRARAQGNLLTLRPPNPALHEVYSD 477 Query: 319 ENLTPETVDKC-PIPFFVYSHGNL 341 + + + + G + Sbjct: 478 PDRLRQILLNLVSNAIKFTAGGRI 501 >gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328] Length = 1769 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 120/778 (15%), Positives = 271/778 (34%), Gaps = 92/778 (11%) Query: 118 LCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176 + + + + + + + +G+ I + L + + Sbjct: 835 WSHGVHPDDRQAAADLLQKAILGEADYNTEFRVLHPDGSL--HYIKASGLVVRDEAGQPI 892 Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPP 232 G + A + + +F + + DI Sbjct: 893 SMIGVNL--DITDIRQAEAALQASETRFRRVFDSNVVGMMFTNFAGDIIEANDRFLEMLG 950 Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFG 290 + R + + + + + + + +S P ++ + + + Sbjct: 951 YSRAQRPMGLINWAEITPPEYRELDLQAIEHLRQSGFIHPFEKAYRHQDGHLVFVLIGVA 1010 Query: 291 TLQNNSKESFEYL--------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL- 341 L + + + E + + + + Sbjct: 1011 MLSQTDGSCVCVVVNISAQKAALQERTKAEQALQESKLRLELGLASANTGLWDWKMQTGE 1070 Query: 342 FYANPSFLLLTKYKSVD------DIEIAGGLSTLLDAPKLSDNNAIK-------PVMLYR 388 + N + + Y+ + + + L + + + L Sbjct: 1071 LWFNKQWKSMLGYQEHEIENRLTEWQSRVHPDDLAQVYQDVERHIQGKTELYRNEHRLRC 1130 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 D + A+ ++ + E L + + + + + Sbjct: 1131 KDGSYRWILAQGRMVERDAEGRLLRFIGTHTDISDRKKAEQTIEQQAQRERLLRETNQRI 1190 Query: 449 IEVMQLCSI-----------LEATSDGIAII--NR---EGIILS---TNRAVSKLFGYPV 489 + + L +I L+ + GI + +G ++ N + PV Sbjct: 1191 SQSLDLPTIFDTASREICNCLQGSRVGIFKFYPDSGYDDGEFVAESVVND-FPSVLAIPV 1249 Query: 490 EDIL-RKPFTVFLEQNTPSVMNHYLT--------------EILSLDLRQTLEKITLG--- 531 D + + Q V + ++ + + + + L Sbjct: 1250 HDHCFGENYASLYAQGRYYVADDIHHDGLENCHVDILSQFQVRANLVIPIICQDVLWGLL 1309 Query: 532 --------STKEEKLLSL-----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 E+ + L + + S+ + ++ E +Q + +L+ + Sbjct: 1310 CIHQCDGPRHWEQSDIDLAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNQEL 1369 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 + + K +FLA +SHE+RTPL AI+G +E + + FGP+ N R ++ ++RS + +L Sbjct: 1370 IRATRLKDEFLANMSHELRTPLNAILGMTEGLHEEVFGPV-NDRQLKALQTVERSASHLL 1428 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 ++ND+LD++KIESG++ L P ++ +I+ ++ A +KRI + + N+P I+ Sbjct: 1429 ALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNLPDII 1488 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THTSNEEVILRVRDTGVGMTNY 751 D R ++Q+ +N+L+NA+ FTP GG I + + + VRDTG+G++ Sbjct: 1489 LDERRIRQVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIGISPE 1548 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++K +PF QI ++ + +GTGLGL L K +V+ + G+ + S G+ I P Sbjct: 1549 NIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVGVGSCFSIDLP 1606 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 49/517 (9%), Positives = 139/517 (26%), Gaps = 23/517 (4%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRL-------CDVSDILHIDP-NNHIGDLLKRQNT 142 GYL E + G G+ L + +D + +++ + Sbjct: 549 PEGYLIEANRAAEDLFGYSRDDFSGLSLERSPLHISQLHPPEELDRIFSSFERIIEEKQL 608 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 W T + +G+ +P+D++ I GI + + Sbjct: 609 WVLDTRILKADGS--EIPVDISGSLIKVGQTHIV----QGIFRDIGDRAAFEEKLRSSET 662 Query: 203 KFSHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + E + ++ T +D+ + P Sbjct: 663 ELRSVFEAMGDLVLIIAPDARKVNVMPTRHQILEPQATEILDQTLDCLFQDEAESRTRLP 722 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 +L + + ++ ++ + + ++ + + A + Sbjct: 723 ILEALTTGKTVSFEYQIDLEDRRIYFEASISPMSDRRVIWVARDMTKRKQAEAEIFQLSQ 782 Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-APKLSDN 378 + I F+ + N + L + + + + + Sbjct: 783 RLKIALSSGNIGFWDWDLRQNQITWDEQMYALYGVDNSSYFSSPESVVAYEVWSHGVHPD 842 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + L + A + + + ++ + + G+ + Sbjct: 843 DRQAAADLLQKAILGEADYNTEFRVLHPDGSLHYIKASGLVVRDEAGQPISMIGVNLDIT 902 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--P 496 D R + ++ + + ++ G+ N G I+ N ++ GY Sbjct: 903 DIRQAEAALQASETRFRRVFDSNVVGMMFTNFAGDIIEANDRFLEMLGYSRAQRPMGLIN 962 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 + + + + EK ++ L+ + I + L + + Sbjct: 963 WAEITPPEYRELDLQAIEHLRQSGFIHPFEK--AYRHQDGHLVFVLIGVAMLSQTDGSCV 1020 Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + +IS K + + A++ ++ LA Sbjct: 1021 CVVVNISAQKAALQERTKAEQALQESKLRLELGLASA 1057 Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 45/531 (8%), Positives = 139/531 (26%), Gaps = 48/531 (9%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTT 148 + + + A +++ L D + I + L T + Sbjct: 680 PDARKVNVMPTRHQILEPQATEILDQTL-DCLFQDEAESRTRLPILEALTTGKTVSFE-- 736 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + I+ + + + + P+ R R + A +L ++ Sbjct: 737 -YQIDLEDRRIYFEASISPMSDR-------RVIWVARDMTKRKQAEAEIFQLSQRLKIAL 788 Query: 209 EI---------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE---YYAHKDDVLKT 256 + + E+ + V + D Sbjct: 789 SSGNIGFWDWDLRQNQITWDEQMYALYGVDNSSYFSSPESVVAYEVWSHGVHPDDRQAAA 848 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LS 312 + E+ + + + + K +++ + + + + Sbjct: 849 DLLQKAILGEADYNTEFRVLHPDGSLHYIKASGLVVRDEAGQPISMIGVNLDITDIRQAE 908 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 A E D + + G++ AN FL + Y G ++ Sbjct: 909 AALQASETRFRRVFDSNVVGMMFTNFAGDIIEANDRFLEMLGYSRAQ--RPMGLINWAEI 966 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP---FEKANQFPENM 428 P ++ + R + + + + + Sbjct: 967 TPPEYRELDLQAIEHLRQSGFIHPFEKAYR--HQDGHLVFVLIGVAMLSQTDGSCVCVVV 1024 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + ++ ++ ++L L + + G+ + L N+ + GY Sbjct: 1025 NISAQKAALQERTKAEQALQESKLRLELGLASANTGLWDWKMQTGELWFNKQWKSMLGYQ 1084 Query: 489 VEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +I + + + + + + + + + K+ + + Sbjct: 1085 EHEIENRLTEWQSRVHPDDLAQVYQDVERHI-QGKTELYRNEHRLRCKDGSYRWILAQGR 1143 Query: 547 KLPFSS-----CYSLTMHDISEWKQEK---NKLSHAKKIAEKESSHKSDFL 589 + + + T DIS+ K+ + + + +++ + + S L Sbjct: 1144 MVERDAEGRLLRFIGTHTDISDRKKAEQTIEQQAQRERLLRETNQRISQSL 1194 Score = 90.9 bits (224), Expect = 9e-16, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 85/273 (31%), Gaps = 16/273 (5%) Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 Y G + + + + + L+ P + D+ ++ D+ Sbjct: 408 YRQGRVRVVRDIYDDSMTLCHQELLLSFDIRAKLMV-PLVVDDRLWGLMIASHRDQPRDW 466 Query: 396 ASAR---LHTIQWNRENSLAMTFIPFE---KANQFPENMPQNGIEPEDVDTRINKR--KM 447 + L + +L + + Q + ++++R+ +R ++ Sbjct: 467 QTGEIELLQALSIQLAIALKQATQHEQLQNEIRQRQKAQLALASLNSELESRVEQRTAEL 526 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-------KPFTVF 500 + + ++E SD I + EG ++ NRA LFGY +D + Sbjct: 527 QAREARYRGLMEGASDAIFLATPEGYLIEANRAAEDLFGYSRDDFSGLSLERSPLHISQL 586 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + I+ L+ L + E + + + K+ + D Sbjct: 587 HPPEELDRIFSSFERIIEEKQLWVLDTRILKADGSEIPVDISGSLIKVGQTHIVQGIFRD 646 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 I + + KL ++ D + ++ Sbjct: 647 IGDRAAFEEKLRSSETELRSVFEAMGDLVLIIA 679 >gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413] Length = 720 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 100/451 (22%), Positives = 182/451 (40%), Gaps = 14/451 (3%) Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L + P+ + + + T +++ E+ M+ + A+ Sbjct: 131 LHHPLFPIVEGLLIPLYINNQPLGTLWIVSHQETRRFDGEDHRLMSRLAGFSASALQSLN 190 Query: 429 PQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVS 482 E + + K+ Q +++ GI + + Sbjct: 191 YWHQKAENAVRQEQAIRAKLNYTQAQFEALVANVP-GIVYRYSPCPDHPYRFTFFSSGCY 249 Query: 483 KLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 +L + I+ F + +T + L E + + + K + Sbjct: 250 ELLELEAQTIVQDGNAFVQLIHPEDVDSFKSSVTHAVENFLPWRWEGRIITPSGKLKWIV 309 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 + + + DI+ K + +L +++ A+ + K +FLA +SHE+R+PL Sbjct: 310 GSSRAVPTTEGNAWDGILIDITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPL 369 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 I+G+S ++ ++ L + E I R+ L +++ DLLD+S+I GK+NL+ Sbjct: 370 NPILGWSSLLLKRK---LSEAKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCS 426 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PV L + A+ VQL A K I ++ + NI ++ D ++Q+ N+LSNA+ FTP Sbjct: 427 PVDLTATIMGAMETVQLAAQAKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTP 486 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 GGQ+ I V + V DTG G+ L F Q S + G GLGL + Sbjct: 487 PGGQVNIHLE-QLGNVVQITVSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAI 545 Query: 781 AKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810 A+ +V+ + G S +G I PL Sbjct: 546 ARHLVELHSGTIEAQSPGVDQGATFIIRLPL 576 >gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1] Length = 997 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 100/498 (20%), Positives = 205/498 (41%), Gaps = 18/498 (3%) Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-----LDAPKLSDNNAIKPVMLYRS 389 + N F + DD + L + +++ Sbjct: 229 ILRLDEQHQGNIRFTADVVLFTTDDYFQTAMANKRQDFLMLGLAWIGIAILSAWLLVTWL 288 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRK 446 +R + L + + + + ++ Q E E + + R+ Sbjct: 289 NRRLNEVARELRGLNLSGASFGRLKVQGEDEVRQVAEAFNAVLERLESAYGELAKKSARQ 348 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 M++E + +++ + + I + +G ++ N A KL GY +L L N+ Sbjct: 349 MQLEREKYRGVVDQAGESLLIFDLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLAPNST 408 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + ++ + T E + ++ + + ++ + DI++ K+ Sbjct: 409 LTIPNHDGDNAENPSHVTFETRLHTADGQDLEVEVWAGFLEIDYVQHTLWLARDITDRKR 468 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + ++ A+ +AEK KS FLA +SHEIRTP+ AI+G +E++ + Y Sbjct: 469 LEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETEL----DADQSRY 524 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 +G +L ++ND+LDISK E+G + L S+ E + + L+ EK + + Sbjct: 525 VRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLAYKCKEKGLYL 584 Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVR 742 + + P ++ D ++Q+ +N+L NAI FT +G +++ + + ++ V Sbjct: 585 LVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIADKQVQLAFHVV 644 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+++ + EK +PF Q GTGLGL + ++++ GK + S G+ Sbjct: 645 DTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKITVHSRADHGS 704 Query: 803 LIE--IIFPLYDTSHPHD 818 + L + S + Sbjct: 705 TFTAQVNLDLAEESTAQN 722 Score = 38.5 bits (88), Expect = 4.9, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 39/162 (24%), Gaps = 7/162 (4%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148 D G + E + K +G ++ + + NH GD + + +T Sbjct: 371 DLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLAPNSTLTIPNHDGDNAENPSHVTFETR 430 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L V + L I + A + Sbjct: 431 LHTADGQDLEVEVWAGFLEIDYVQHTLW------LARDITDRKRLEAEMVAARDMAEKAY 484 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + K + + + + + Sbjct: 485 QAKSIFLATMSHEIRTPMNAILGTAELLAETELDADQSRYVR 526 >gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 614 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 89/423 (21%), Positives = 170/423 (40%), Gaps = 29/423 (6%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKRKMEIEVMQL 454 R + + P ++ + Q + ++ +N K+ E + Sbjct: 214 RMREAAKRIADGDYDVQV--PVSGQDELAQLAGQFNSMAKRLEQYHAMNIGKILAEKHKT 271 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 +IL++ DGI +++ E I+S N +F E++ K + S + Sbjct: 272 EAILQSVDDGIVVVDPEFSIMSINLMAGSIFNVSPEEVSGKHVLEAIRDERLSKLIK--Q 329 Query: 515 EILSLDLRQTLEKITLGSTKEEK---LLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKN 569 I + + E+ + S + S ++ + + + D++ + Sbjct: 330 AIETGRQPELDEQESTLSVSRGEKQVYYSFSVVPVHIGHGPVIAAVLLLRDVTRLR---- 385 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + KS+F+ SHE+RTPLT+I G S + + G + R + Sbjct: 386 ----------ELDRLKSEFVMTASHELRTPLTSI-GMSIDLLKDKAGSKLSDRERQLLTV 434 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +VN+LLD+SKIE+GK+ + FE V L + ++ A + + + S Sbjct: 435 AQEDVQRLKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFS 494 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 +P + D + + +N++ NA+ TP G + + + + V D G G+ Sbjct: 495 CDEGLPEVRVDPNKITWVLVNLVGNALRHTPENGHVRV-AAKQAGRFAHVSVSDDGEGIP 553 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 K F Q+ + + GTGLGL + K +V A+ G ++ STP KGT P Sbjct: 554 LEFQTKIFDKFVQVKS--RRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVP 611 Query: 810 LYD 812 + + Sbjct: 612 IAE 614 >gi|218898190|ref|YP_002446601.1| sporulation kinase [Bacillus cereus G9842] gi|218540722|gb|ACK93116.1| sporulation kinase [Bacillus cereus G9842] Length = 801 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351 + E + + + + T E ++ G++ AN ++ + Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ + + Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHRQLRDSEMKYRALIEQATD 465 Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + +N + + N + FGY E++L F+ + Q++ ++ L +I Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T + + + L + DI+E + + L ++K+A Sbjct: 525 GQTSFTLQDEYVFPTGKVITAEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ N Y N + + Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I + + ++K + K+ + + + + + L+Q A I R IP I Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NIL NAI P GG+I+I N +V +R D G G+ + + Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGIPKERIPYLGE 750 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P+ Sbjct: 751 PFY------SIKEEGVGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367 + E +TV + F V H + F + S + + Sbjct: 186 RELKKSEQELADTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P L L + I + W + ++ + + + Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G + + + + ++ L S ++ D I I +REG IL N+A K+FG+ Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++I+ K + + +IL T+ + LL + + + Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DISE KQ + + + ++S K L Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHRQL-RDSEMKYRAL 459 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 84/287 (29%), Gaps = 25/287 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G++ + ++ K G + ++IG RL V D L + +I +L ++ +T Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ L V + ++ PI I RL ++ Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHRQLRDSE 453 Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253 + + + P R + ++ SL+ +D Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + ++S Q+++ T + +LS + Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITAEFSVRVFN--LNGKKVFLSISRDITERL 571 Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 +E + V + + N A F+ L K + Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTENE 617 >gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga olearia TBF 19.5.1] Length = 417 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 160/385 (41%), Gaps = 29/385 (7%) Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 N + D +++ ++ + ++L+ D + I + EG + N++ +L Sbjct: 53 YNAVRTLIRDKTEEIKRVSEKLKYMENVLDNLGDALFITDAEGRVEFINKSAKEL--VKS 110 Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 +D+L K + + L + + Q + + + I Sbjct: 111 QDLLGKKMNEII---DNYYIVDLLEDAVKSGSVQQTNLTIF--HPKRRFYECKAIPVSYG 165 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 L + DI+ + + + +F++ VSHE+RTPLT+I G++E Sbjct: 166 EKIHCLLILRDITMERNLE--------------LMRREFVSNVSHELRTPLTSIHGYAET 211 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + ++ I+ + ++NDLLD+ K+E+G + L E V L E Sbjct: 212 LLEYDLS--DEETVRKFLRIIEGESARMTRLINDLLDLEKLEAGDIQLVLEDVELSEVGE 269 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGG--QI 725 I +V A E + I + + D + Q+ LN++ NA+ +T G ++ Sbjct: 270 YVIKIVSPLAEELGVSIYEDMERGV-FVEGDFDRLVQLTLNLVDNAVKYTSVKEHGPKEV 328 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 I +T+N +L V DTG+G+ + + F ++ ++ + GTGLGL + K + Sbjct: 329 WIRV-YTANNYAVLEVEDTGIGIPEEARKHIFERFYRVDKARSRKMGGTGLGLAIVKLIA 387 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810 + + G + S GT ++ PL Sbjct: 388 EKHGGTVSLDSEFGNGTTFKVRLPL 412 >gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 682 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 97/371 (26%), Positives = 180/371 (48%), Gaps = 5/371 (1%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + ++ + ++E ++DGI I+ + +I+ N +++ GY + +++ Sbjct: 299 QKRADEINQAEEKYSVLVEESNDGIIIV-QNYLIVFANLKFAEMLGYEKDRLIKTLLNNC 357 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTM 558 + + + +++ + T + + + + I + + M Sbjct: 358 INNALKNEVITRYEQLIQGRSETEQQYETNFFSHNGENIPVEINSSLIHYRGNRAVMYIM 417 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI++ KQ++ L ++++ AE + K+ FLA +SH++RTPL AIIG+S+++ + G L Sbjct: 418 RDITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDLRTPLNAIIGYSDLLLTESVGDL 477 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N + I+Y N I SG L+L+I+ND+L+ISKIE+GKM L + E + E LV+ Sbjct: 478 -NEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQLRPSENDIQEILKEVNELVKTK 536 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + + N I +I AD + I N++ NAI +P +I I+ T + Sbjct: 537 VQISKNELIFNIENGIEKIYADRIKIISILQNLVDNAIKHSPKNEKIFINITTKDKN-LQ 595 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 + V++ G G+T ++ PF Q+ GTGLGL + K V + GK +I S Sbjct: 596 ICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGLGLAIVKHYVHLHNGKIWIESVL 655 Query: 799 AKGTLIEIIFP 809 + T P Sbjct: 656 GEETSFIFTIP 666 >gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1] Length = 581 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 97/464 (20%), Positives = 187/464 (40%), Gaps = 29/464 (6%) Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407 + + + + + A + ++ + + Sbjct: 147 AVARVALPVEEVYAAVREVDRTILLGAVISILAAGLLAVWVAASVTRPVKELTAISRRIA 206 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 + + I + E + E + I + + E L ++LE DGI + Sbjct: 207 QGQMDTIQIDVSGKGEMEELAKAFRLMTERLRDSI--KAVSSERDHLSAVLERMGDGIFL 264 Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527 ++REG I N A ++F ++ F + + + + S ++ Sbjct: 265 LDREGSINLLNHASERIFKLEAGGVIGHSFVEAIRDHEINAV---FERAKSSGKQEMGFV 321 Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 K L II L S Y + + D+SE ++ + + D Sbjct: 322 ELTA----GKRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRD 362 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 F+A +SHE+RTP+T++ +E ++ + + I + + +V +L D+ Sbjct: 363 FVANISHELRTPITSLKLLTETLQEG--AASDPDVAAGFIDKIHLEVDKLAQLVTELSDL 420 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 S IESG+ L+ +P + A+ A + A I++ +PR+ D V+Q+ Sbjct: 421 SAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPRVRLDENRVEQV 480 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 +N++ NAI FTP GG+I I T ++ +++ V D+G+G+ +L + + F ++ S+ Sbjct: 481 LVNLVHNAIKFTPKGGKIKIGVR-TQSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSR 539 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 G GTGLGL ++K +V A+ G + S KG PL Sbjct: 540 S--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581 Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats. Identities = 30/244 (12%), Positives = 63/244 (25%), Gaps = 17/244 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + ++ + A +IG + ++ I + +R + G Sbjct: 262 IFLLDREGSINLLNHASERIFKLEAGGVIGHSFVEAI------RDHEINAVFERAKS-SG 314 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 K + +E T + + A P+ S++ +V + + S Sbjct: 315 KQEMGFVELTAGKRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H + E + P +K+ + A L TE L E Sbjct: 369 HELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 I + + P + + E + Sbjct: 425 SGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPRVRLDENRVEQVLVNL 484 Query: 326 VDKC 329 V Sbjct: 485 VHNA 488 >gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6] Length = 670 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 15/403 (3%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFG 486 + G + + + ++ + + + G+ R IL N + FG Sbjct: 122 LRLKGYHQDVSELESMRERLRENLSRFETACRIGRIGVFECTRGSRILFSANDIFFEQFG 181 Query: 487 YPVEDILR---KPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLR 542 P + + + + + L + E L K + Sbjct: 182 IPADMVCFSAFRGLWSRIAPGCRKRVLEALRRSSWKPGRCERFEIELLDPEKGSRWFDFE 241 Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602 + + + DI+E KQ + L A + AE + KS FLA +SHE+RTP+ A Sbjct: 242 SEFSRDGDAVRAVGYVADITEHKQHEASLRMAAEAAEAANRAKSSFLANMSHELRTPMNA 301 Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 IIG S + + EY + I S +L I+ND+LD++K+E+ K+ L P Sbjct: 302 IIGLSYLALKTDLTT----QQYEYISRISESSTALLGILNDILDLTKVEANKLELARTPF 357 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS 721 +L + + ++V A K + A ++P + + D V+Q+ LN+ +NA+ FT Sbjct: 358 NLKKELGILAAVVLPEAEGKGLEFSLEIAPDVPLLLMGDALRVRQVLLNLCNNAVKFTDE 417 Query: 722 GGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 G + + ++N V L VRD G+G+ E+ + PF Q+ S R GTGLGL Sbjct: 418 GSVSLRVRVVDSTNTRVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGL 477 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHDC 819 ++K +V+ G + S KG+ + PL + P D Sbjct: 478 AISKRLVELMGGTLTVGSRVNKGSTFRVELAFPLAEDVPPGDA 520 >gi|312961453|ref|ZP_07775956.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens WH6] gi|311284348|gb|EFQ62926.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens WH6] Length = 1381 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 128/767 (16%), Positives = 259/767 (33%), Gaps = 61/767 (7%) Query: 52 SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111 + T N + + D H + +SE + + A Sbjct: 526 NASTTAAVAPPPNKVSFNDIHLRALAKAAPPSVIV---DIHADILHMSEGAGRFLRYVAG 582 Query: 112 KMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 ++ L + +D + + + E +D++A P Sbjct: 583 EIT-HNLLALVHPDLRLDIRTTLFQAQQSNIAVTSRKVRIQREQGTY--LVDISARPYRD 639 Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 + L ++ ++ + D S Sbjct: 640 DA----------------------------TENDYVLVMFQETEVDPQQSEADTISHAEN 671 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 ++ ++ + + + L S E E+ + T K+ Sbjct: 672 QLMSTLERELQRTKLHLQDTIEQAEVSSEELKASNEEMQAINEELRSATEELETSKEELQ 731 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFL 349 ++ L + + D+ + + I FV + + + P Sbjct: 732 SINEELLTVNYELKTKVEET-----DKVNDYLTNLIASTDIATVFVDRNMRIRWFTPRAT 786 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409 L VD ++ LD P ++D+ A L +R + R Sbjct: 787 DLFSMLPVDTGRSLMDITHRLDYPHMTDDAATVFESLSIIEREISSKDGR---------- 836 Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAII 468 + + R + ++ + ++ + E+T D I I+ Sbjct: 837 --WYIARLLPYRSSEDHIDGTVLTFIDITKRRQAEEELRLGEERMRLVAESTHDFAIIIL 894 Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528 N G I N +FGY +++L + + S +E+ + E Sbjct: 895 NDHGAITDWNTGAELIFGYTKDEVLGAYYDLIFSPEDRSAGIPE-SELRAAREHGRGEDE 953 Query: 529 TLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K+ + + K Y D++ K+ +++ S + + S K Sbjct: 954 RWHVRKDGSRFYCSGEVTLLKSASLQGYVKIARDLTGHKRTQDEQSQRLRETQTNSHLKD 1013 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 +F A +SHE++ PL I +E+++ P I + + I++DLLD Sbjct: 1014 EFFAVMSHELKHPLNLIQLNAELLRRLPATKTAAPAVR-AVETICEAVSSQARIIDDLLD 1072 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 ++++ +GK+ L +PV L + + S+V + +++ ++T + AD ++Q Sbjct: 1073 VARVRTGKLKLKKQPVDLIRTLQDIHSVVLADGHHRQVTLQTPSEPGALIVDADPTRIEQ 1132 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN- 765 + N+++NA+ FTP GQ+ + + + N L V D+G G+ + LEK FGQ N Sbjct: 1133 VIWNLVNNALKFTPQDGQVQLVLSRS-NGHAQLDVIDSGAGLADDSLEKIFDLFGQAENQ 1191 Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811 Q + EG G+GL L + +V+A+ G + S G I PL Sbjct: 1192 HQTHQREGLGIGLSLVRQLVEAHDGLVSVHSKGLGFGCTFSIRLPLS 1238 >gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium carboxidivorans P7] Length = 566 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 161/360 (44%), Gaps = 30/360 (8%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +L +IL++ G+ ++ I+ N K+FG + I + V Sbjct: 236 QNKLEAILKSMDSGVIAVDVNYKIIMINPYAKKIFGINGDIIGENLMDNIRDFEFEDVFK 295 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + + + + + E+ T + I + + DI++ K+ + Sbjct: 296 NTDEDYVEIKILWPKERNLRIRTAD---------IINVREKIGTVAVVQDITDIKRLE-- 344 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + ++ F+A VSHE++TPLT+I GF+E + + N ++ N I Sbjct: 345 ------------NMRTQFVANVSHELKTPLTSIKGFAETL--RYVDDFKNKE--KFLNII 388 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + + ++ND L +S IES + E + ++ + + LV+ A +K I + + Sbjct: 389 NDEADRLTRLINDTLTLSHIESS-IENKEEEIDVNFIIKDVCCLVKNSAEKKNIKV-LTI 446 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + +P + D KQ+ +N++ NAI ++ + G + I T N+ I+ V D GVG++ Sbjct: 447 GDKVPNLKGDNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLE-NDNCIIWVEDKGVGISK 505 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ + F ++ ++ GTGLGL + K +V A G + S KG+ + P+ Sbjct: 506 EHIDRIFERFYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIPI 565 >gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium carboxidivorans P7] Length = 561 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 161/360 (44%), Gaps = 30/360 (8%) Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 +L +IL++ G+ ++ I+ N K+FG + I + V Sbjct: 231 QNKLEAILKSMDSGVIAVDVNYKIIMINPYAKKIFGINGDIIGENLMDNIRDFEFEDVFK 290 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570 + + + + + E+ T + I + + DI++ K+ + Sbjct: 291 NTDEDYVEIKILWPKERNLRIRTAD---------IINVREKIGTVAVVQDITDIKRLE-- 339 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + ++ F+A VSHE++TPLT+I GF+E + + N ++ N I Sbjct: 340 ------------NMRTQFVANVSHELKTPLTSIKGFAETL--RYVDDFKNKE--KFLNII 383 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + + ++ND L +S IES + E + ++ + + LV+ A +K I + + Sbjct: 384 NDEADRLTRLINDTLTLSHIESS-IENKEEEIDVNFIIKDVCCLVKNSAEKKNIKV-LTI 441 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + +P + D KQ+ +N++ NAI ++ + G + I T N+ I+ V D GVG++ Sbjct: 442 GDKVPNLKGDNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLE-NDNCIIWVEDKGVGISK 500 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +++ + F ++ ++ GTGLGL + K +V A G + S KG+ + P+ Sbjct: 501 EHIDRIFERFYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIPI 560 >gi|254250800|ref|ZP_04944119.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124879934|gb|EAY67290.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 1468 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 128/734 (17%), Positives = 263/734 (35%), Gaps = 63/734 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + +S+ + + + ++ + V L +D I L+ + + Sbjct: 650 IDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRV 709 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 W + I++ P + + + L D+ + Sbjct: 710 KWAHD--TRVSWINMTVRPFHDK------------------VANAEFLLIVFDEVAGRMT 749 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 E + +S + P +++ ++ E A + +T L S E Sbjct: 750 EEDQAETSGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEEL 798 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 E+ + + + K+ ++ + + R + A D + + Sbjct: 799 QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 856 Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 FV + P+ + D ++ L P L+D+ L Sbjct: 857 --ATVFVDKEIRVKRFTPNATAIFNLIDTDLGRSLFHITHALRYPTLADDVRQSFQSLRL 914 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 +R I+ M +P+ A+ + D + Sbjct: 915 IERE----------IESEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHHAEEAAR 962 Query: 449 IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 +L + ++T D I I + G I+S N ++FGY E+++ + + E N Sbjct: 963 AGEQRLRLVAQSTKDYAIIIQDGHGAIVSWNAGAERIFGYTEEEMIGQDVELIYEPNDRQ 1022 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565 + ++ + + TK+ + + ++ + + + ++ + D++ K Sbjct: 1023 ALVPMREREVATREGRA-DDERWHRTKDGRRIFCSGVVTPISDTSFNGFAKIVRDMTLRK 1081 Query: 566 Q-------EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 Q + A++ A + K +F+A +SHE+R PL I SE + + Sbjct: 1082 QSDDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVKSE-MLPRLPETR 1140 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 P E A+ I ++ I++DLLD+S+I++GK+ L V L + + Sbjct: 1141 DIPAVREAADSIRQAVRAQAQIIDDLLDLSRIQTGKLALELNRVDLTAMLRSIADTCERD 1200 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 + + ++++T LAD +QI N++SNA+ +T S G+I++ H + Sbjct: 1201 VHARGLVLKTELPTEPAIALADPVRCEQIFWNLMSNALKYTQSHGEIVVRLAHE-GRMLR 1259 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797 + V D G G+ L F Q P + G G+GL L + +VD + G+ S Sbjct: 1260 VDVVDDGQGIDGDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVDMHGGRIAAASDG 1317 Query: 798 PAKGTLIEIIFPLY 811 P GT + + P Sbjct: 1318 PGAGTTMTVWLPAA 1331 >gi|330894540|gb|EGH27201.1| PAS protein [Pseudomonas syringae pv. mori str. 301020] Length = 1037 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 127/749 (16%), Positives = 262/749 (34%), Gaps = 47/749 (6%) Query: 75 VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F+ V F++ + D L I+ L + +++G L D Sbjct: 70 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 125 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191 L G W + ++ + IY +N ++ G + ++R+ Sbjct: 126 RIRL-------TGAERRWLLNHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 177 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + + + + + ++ G + + + ++ L + + Sbjct: 178 GLQFVHQEVPSTQQSIEMLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVCS 234 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + L + +LP + L++ + + R + Sbjct: 235 ERSSRVSLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLVDTY 277 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E+ + + + +++ G L A S I+ L +L+ Sbjct: 278 DQARALVESGVADATIQNEVGAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 336 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 A + + + + W R + + + Sbjct: 337 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 391 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 ++ + +R++ ++ ++ + + I + + +G ++S NR+ + G E Sbjct: 392 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 451 Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + T + + M+ +L ++ S K + + Sbjct: 452 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 511 Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+E KQ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E Sbjct: 512 GQLQGLLGGWVDITERKQLEQQLQKAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 571 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + P RS ++ ++ + LD+++IE+G M L SL Sbjct: 572 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 629 Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 I L A EK + +R F+ D ++Q+ N+L NA+ FT G ++ Sbjct: 630 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 689 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V + ++D+G G+ +K +PF Q + G GLGL + + +V+ Sbjct: 690 VVALDDSSRVRIAIQDSGEGIEPERQQKIFQPFTQASDDTAAHYGGGGLGLSITRQLVEL 749 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G ++S P +GTL+ I PL S P Sbjct: 750 MKGDISLYSEPGEGTLVNIDLPLVRVSEP 778 >gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti AK83] gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium meliloti BL225C] Length = 775 Score = 329 bits (843), Expect = 2e-87, Method: Composition-based stats. Identities = 117/658 (17%), Positives = 241/658 (36%), Gaps = 51/658 (7%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 D + + + G + + I + + + V + Sbjct: 129 EILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGT 188 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 L+ ++ + + + + G + Y Sbjct: 189 EHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKR 248 Query: 309 PS-LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366 A F E + + + + + + S + + + G Sbjct: 249 TRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDA 308 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + L+ + + + + I ++ ++ + + + Sbjct: 309 ARLMHVEDRGIYRVARAI--AKGNERQID---QVFRMRHADGHYVWLRARAQVIRTVSGR 363 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 GI + + ++ +L +E TS+ + ++ ++ N + + Sbjct: 364 -THLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQ 422 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P ++ + + + ++ R + + +E+ L + Sbjct: 423 LPDHVLVPGTERTIVH---AAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRT 479 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------------- 573 + DI+ K+ + +L Sbjct: 480 R---DGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANY 536 Query: 574 --AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 K+ AE + KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ +Y EY+ I Sbjct: 537 QAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIF 596 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L+++ND+LD+SKIE+G M + E + L + E + + A K I + + Sbjct: 597 ESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQIS 656 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + + AD R++KQ+ LN+LSNA+ FT GG+I + V L + D+G+G+ Sbjct: 657 SGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIADSGIGIPKG 714 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L+K +PF Q+ + G+GLGL +++++ + G I S GT+I + P Sbjct: 715 ALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 772 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 36/398 (9%), Positives = 100/398 (25%), Gaps = 21/398 (5%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 D + E + + + ++ ++ E + + + Sbjct: 5 ADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAF 64 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L+ + ++ + + ++ E Sbjct: 65 LLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTE 124 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 L E +D V G +F + L L + + + Sbjct: 125 FLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRAS 184 Query: 380 AIKP---VMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKA--NQFPENMPQ 430 + L + + A A + W E SL +T A Sbjct: 185 IDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYI 244 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 D D + + +E + L G+ + + L +R++ ++ G + Sbjct: 245 QAKRTRDADAVFAESNLRVE-----TALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGD 299 Query: 491 D--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + + + + ++ + ++++ + + LR + + Sbjct: 300 ASVLSFGDAARLMHVEDRGIYR--VARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVI 357 Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 S D++E + + + A + Sbjct: 358 RTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIE 395 Score = 45.8 bits (107), Expect = 0.034, Method: Composition-based stats. Identities = 30/378 (7%), Positives = 87/378 (23%), Gaps = 15/378 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + + +G + + D + ++H++ + + + N Sbjct: 274 LWDFDLDNRRLFWSRSMYEMLGMQGDASV-LSFGDAARLMHVEDRGIYRVARAIAKGNER 332 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I + + GI + D++ Sbjct: 333 QIDQVFRMRHADGHYVWLRARAQVIRTVSGR---THLIGIAMDVTEQHRLAQRYAEADQR 389 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + ++ + V Sbjct: 390 LADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERR 449 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ + ++ + ++ S + L Sbjct: 450 IADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 509 Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 D L AN ++ + + + L+ + + N + Sbjct: 510 ATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAIL 569 Query: 382 KPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + ++ + I E Sbjct: 570 GFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHM-----RITR 624 Query: 440 TRINKRKMEIEVMQLCSI 457 RI+ + E ++ +I Sbjct: 625 ERIDLAPLIEETLRFTTI 642 >gi|37678828|ref|NP_933437.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus YJ016] gi|37197569|dbj|BAC93408.1| signal transduction histidine kinase [Vibrio vulnificus YJ016] Length = 780 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 175/391 (44%), Gaps = 19/391 (4%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 +E E + ++ L S ++A+ D I N EG+ NRA+ +L G Sbjct: 135 DLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQ 194 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + + ++ + + T E+ + LR + Sbjct: 195 LVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPFYSKDG 254 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DI+E K+ + L EK S K+ F++ +SHE+RTPL I+G S + Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + R +Y I+ S + +I ND++D+ K + K+ L P++ ++ V+ Sbjct: 308 LLDTRL----TDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVA 363 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727 E S+ L A +K + + +P+ I D ++Q+ N++SNA+ FT GG + + Sbjct: 364 EIESISALMAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTV 423 Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785 S+ + +I+ V DTG+G+ EL+K + Q+ + + GTG+GL +++ ++ Sbjct: 424 SSEVEEDFATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483 Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814 + G + S G+ I P+ +++ Sbjct: 484 NMMDGDITVSSEEGFGSTFTISIHVPVIESA 514 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 24/240 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + Sbjct: 172 NAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----------------AHKDD 252 I R+ ++ + K D Sbjct: 288 STISHELRT--PLNGIVGLSRMLLDTRLTDEQRKYMQTINVSAITLGNIFNDIIDMDKFD 345 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 K E P + E + E E + Q + L + ++ E + R + Sbjct: 346 RRKLELLPAPLNFEDFVAEIESISALMAEQKGLRFDLERL-SELPKAIEVDATRLRQVIW 404 >gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195] Length = 581 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 95/454 (20%), Positives = 185/454 (40%), Gaps = 29/454 (6%) Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + G + + L A + ++ + + + I Sbjct: 156 EEVYAAVGDVDRTILLSALISILAAGLLAVWVAASLTRPIKELTAIARRIARGQMDAVQI 215 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + E + E + IN + E +L ++LE DGI +++ EG I Sbjct: 216 EVSGKGEMEELAHAFRLMTERLRDSIN--AVSSERDRLSAVLERMGDGIFLLDCEGTISL 273 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A ++F E ++ F + + ++ S ++ Sbjct: 274 LNPAAERIFKLEAEHVIGHSFVEAIRDH---EIHSIFEHSKSSGKQEMGFVEL----ASG 326 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + L II L S Y + + D+SE ++ + + DF+A +SHE+ Sbjct: 327 RRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRDFVANISHEL 371 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP++++ +E ++ + I + + +V +L D+S IESG+ Sbjct: 372 RTPISSLKLLTETLQEGAASDAAV--AAGFIEKIHLEVDKLAQLVTELSDLSAIESGQAV 429 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L+ +P + A+ A + + A I + +P++ D ++Q+ +N++ NAI Sbjct: 430 LNLQPGDISTAIKLAAARLSPQAERAGISLGVELPETLPQVKLDENRIEQVLVNLVHNAI 489 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP GG+I I T + +++ V D+G+G+ +L + + F ++ ++ G GTGL Sbjct: 490 KFTPKGGRIKIG-ARTQGQILVVYVSDSGIGIPEDDLTRVFERFYKVDKARS--GGGTGL 546 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL ++K +V A+ G + S KG PL Sbjct: 547 GLAISKHIVQAHGGNIWAESRYGKGATFSFSLPL 580 >gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a] Length = 623 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 166/376 (44%), Gaps = 30/376 (7%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 R + E E +L S+L+ +DG+ +R ++ TN +L G +I+ Sbjct: 260 REAQESTESERQRLDSVLKHMTDGVIATDRRSRVMITNNRACELIGKKEAEIMGHSIMEV 319 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTM 558 L L + +E ++ L +I ++ + S + Sbjct: 320 LNLRDKYTFRELLNS------ESDILMHFTSDDGQESIIKGELSVIQRESGYVSGLVWVL 373 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ + + F++ VSHE+RTPLT++ +SE + + Sbjct: 374 TDVTEHEKIE--------------RDRRQFVSNVSHELRTPLTSVRSYSEALADGAI--K 417 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + +E+ I R + ++ +++DLL++S+++S + ++ E + V+ + + Sbjct: 418 DSELAVEFLGVIQRETDRMIRMISDLLNLSRMDSNRQEMNLELIDFQGLVNHILDRFDMM 477 Query: 679 ANEKRI-----LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733 + I+ + + AD + Q+ NIL+NAI ++P GG I + T+ Sbjct: 478 IQSEDYVNEEYHIQRELTKSPIWVEADQDRLTQVIDNILNNAIKYSPDGGTITVRL-MTT 536 Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793 + E IL V+D G+G+ L F ++ ++ + G+GLGL +AK +V+ + GK + Sbjct: 537 HNEAILSVQDQGLGIPQKALGHVFDRFYRVDKARSRQQGGSGLGLAIAKEVVELHHGKIW 596 Query: 794 IFSTPAKGTLIEIIFP 809 S KG+ I P Sbjct: 597 ANSIENKGSTFFISLP 612 >gi|221198638|ref|ZP_03571683.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] gi|221181089|gb|EEE13491.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2M] Length = 763 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 104/618 (16%), Positives = 210/618 (33%), Gaps = 30/618 (4%) Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + ++V + F + P + + + L+ + Sbjct: 9 ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 68 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S P + + + + + + Sbjct: 69 FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAARAQFEAL 128 Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 ++ P L Y N + L + D AG + D ++ Sbjct: 129 LNALPDGVIAADTNARLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 185 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 L + + H ++ + + A+ + + R Sbjct: 186 ALEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 244 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ ++++A+ D + I+R+ I+S N A ++FGY E + F + Sbjct: 245 DAAQVR----RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 299 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + H L + L ++ + + + + + + I+ Sbjct: 300 -RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 357 Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612 + + A + A + K + LA VSHE+RTPL I G+ EV++N Sbjct: 358 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 417 Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672 L ++ + IDRS + +V D+LD S + +GK+ L PV + ++ + Sbjct: 418 SGDDTL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 473 Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732 + Q A+ I + + D ++Q+ N++SNA+ FTP+GG + +S H Sbjct: 474 AAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 532 Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + +L V DTG G+ + F + +S G GLGL + + +V + G Sbjct: 533 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 592 Query: 793 YIFST-PAKGTLIEIIFP 809 + S +GT + P Sbjct: 593 VVDSAGRNRGTTFTVKLP 610 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 64/260 (24%), Gaps = 21/260 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 D + L ++ +G G L DV + D L+ T Sbjct: 140 DTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSALEHALGGTRTTCE 199 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W VP+ A PI + G A +R S Sbjct: 200 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 259 Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250 + S IF + R + + ++ H Sbjct: 260 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 319 Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D + + ++ P + + T ++ + + + S R+ Sbjct: 320 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 379 Query: 309 PSLSAYFDEGENLTPETVDK 328 +A + ++ TV Sbjct: 380 GEQAATSNRLKDELLATVSH 399 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 29/280 (10%), Positives = 61/280 (21%), Gaps = 15/280 (5%) Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 AL L + + V + + R V LT+ Sbjct: 124 QFEALLNALPDGVIA-ADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTD---RDG 179 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 ++T + E+ + + + + S Sbjct: 180 RRVQTSALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASA 239 Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----- 365 + + VD P + + NP+ + Y Sbjct: 240 DRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM 299 Query: 366 ---LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L + PV L R D A+ ++ + +A++ E Sbjct: 300 RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRET 359 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 Q ++ D +L + + Sbjct: 360 GAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSH 399 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + + + G G R + + + + + + G Sbjct: 264 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 322 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + +AA P+ R+ G + R R +R + Sbjct: 323 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 377 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ + K ++ + S + + DD L+ + + S Sbjct: 378 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTLRVQAIDAIDRSARS 437 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + T K T+ + F + + S+ Sbjct: 438 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 483 >gi|83815062|ref|YP_444248.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855] gi|83756456|gb|ABC44569.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855] Length = 1067 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 128/772 (16%), Positives = 269/772 (34%), Gaps = 66/772 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + L +E L +G + + V D + R + G Sbjct: 305 IYRSTPDDGLVYANEALADMLGYRSVDALLEADP-VHFYADPDQRAQVIQQSNRNDGITG 363 Query: 146 KTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 +GT L+A + + + G V ++ +++ Sbjct: 364 VEVEFRRTDGTTFTGL--LSATTVRGPDGAVQYYDG--AVTEITEQKRQEQQLRQSRERW 419 Query: 205 SHLHE---------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 L E + + +I +P + + + + ++ + Sbjct: 420 RRLVEKLQDGLHIAVDGDIRYINPAGAEILGADAPDDV--IGHSLWDFVALEQAQQEIFE 477 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSA 313 + S+ P++ + +N + + Y ++ + + Sbjct: 478 DRLRKIYRERTSTAPQEMEITGLNGERRVIESYTVPIKFDGEQAGQTVFRDITEQKEMEQ 537 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 E E + + + L YAN +F + Y+SV+ I + L Sbjct: 538 ALREREARLRSITENVSDGIYRSTPNKGLVYANRAFADIFGYESVEAILQIDPIE-LYAN 596 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P R + A + ++ ++ E + +G Sbjct: 597 PDARSE-------NRRITKEQDHIDAAEAEFRRKDGSTFTGLVSATTVRDENDEVIYYDG 649 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEAT--------SDGIA---------IIN------ 469 + + + R + +L S+ AT D +A + + Sbjct: 650 AITDITEQKEQARTLRDRQQKLESLYTATRHLLRAETPDAVATRIQHVLQDVFDYPLAGV 709 Query: 470 ---REGIILSTNRAVS---KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 +G ++ A++ ++ ++ +V+ + + + Sbjct: 710 DFAEDGRLVPVEGAIASPGQMPTIQSLSAGGDSIGARAYRSGETVVVQNVEALDNDVAYG 769 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS------EWKQEKNKLSHAKKI 577 L + ++ + + L ++ + + KL AK+ Sbjct: 770 GLRSVACAPMGTHGVVLMGQTSHDAFDAFNLRLVEVLVTYAAVVLDRLGREQKLREAKET 829 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS FLA +SHEIRTPLT+IIGF+E I ++ G G+P +A I++ G + Sbjct: 830 AEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFAGLIEKGGRRL 887 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 L+ ++ +L++SK+E+ +M L P+++ E ++ +L + A + I +R + Sbjct: 888 LETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLRVDVPSGPLWA 947 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 AD +++ + N++SNA+ +T GG++ I + + +L V DTG GM + Sbjct: 948 RADEGALRIVLRNLVSNAVKYTGDGGRVWIRARRAED-QAVLEVEDTGQGMDPAAVSTLF 1006 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F Q + EGTGLGL + K VD G + + G+ + P Sbjct: 1007 EAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVRLP 1058 Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats. Identities = 62/534 (11%), Positives = 156/534 (29%), Gaps = 37/534 (6%) Query: 81 RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR 139 T +FT + G L E ++ + G +++G D + + +++ Sbjct: 161 HTYQFTGLLTPDGILVEANDTALEFGGLEREEVVGTPFWDTHWWQTGPETQQKLRAAVEQ 220 Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199 ++G + ID + P+ + + G ++ Sbjct: 221 AAEGEFVRYEADVQGADETRTIDFSIRPVTDGDGSVTMLIPEG--RDITDRKRQERQLRK 278 Query: 200 LDKKFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +K + + S+ + + + +P L N+ + Y D +L+ + Sbjct: 279 EKRKTEEALQARDALLGSITENISEGIYRSTPDDGLVYANEALADMLGYRSVDALLEADP 338 Query: 259 YPLLTSEESSLPE-------------QEDFHTINLNQYTKKQYFGTLQNNSKES----FE 301 + + +F + +T T++ Sbjct: 339 VHFYADPDQRAQVIQQSNRNDGITGVEVEFRRTDGTTFTGLLSATTVRGPDGAVQYYDGA 398 Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361 + V+K + G++ Y NP+ + + DD+ Sbjct: 399 VTEITEQKRQEQQLRQSRERWRRLVEKLQDGLHIAVDGDIRYINPAGAEILGADAPDDVI 458 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 + + + +YR + + + N E + ++ K Sbjct: 459 GHSLWDFVALEQAQQEIFEDRLRKIYRERTSTAPQEMEITGL--NGERRVIESYTVPIKF 516 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + + + ++ + +L SI E SDGI ++ NRA Sbjct: 517 DGEQAGQTVF---RDITEQKEMEQALREREARLRSITENVSDGIYRSTPNKGLVYANRAF 573 Query: 482 SKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 + +FGY + + + P ++ + S ++ + K+ Sbjct: 574 ADIFGYESVEAILQIDPIELYANPDARSE-----NRRITKEQDHIDAAEAEFRRKDGSTF 628 Query: 540 SLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + + + + + DI+E K++ L ++ E + L Sbjct: 629 TGLVSATTVRDENDEVIYYDGAITDITEQKEQARTLRDRQQKLESLYTATRHLL 682 Score = 77.8 bits (190), Expect = 8e-12, Method: Composition-based stats. Identities = 27/271 (9%), Positives = 71/271 (26%), Gaps = 15/271 (5%) Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 D + + + A L D P ++ + I+ Sbjct: 38 ADGLRDAGLQDEGDGIKA--RLCTRALRSPGATVVTNATDDDRLADHPWVAGDPGIRFYA 95 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 L + ++ + +++ Sbjct: 96 GAPLVGPQGHRIGSLCVLDTEAQS---------PPPADVDRLKGLAEMIVNELELHRQAD 146 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + Q +I T ++ +GI++ N + G E+++ PF T Sbjct: 147 AWDRARQQYEAIFNHTYQFTGLLTPDGILVEANDTALEFGGLEREEVVGTPFWDTHWWQT 206 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDI 561 L + + ++ ++ I+ + + DI Sbjct: 207 GPETQQKLRAAVEQAAEGEFVRYEADVQGADETRTIDFSIRPVTDGDGSVTMLIPEGRDI 266 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++ K+++ +L K+ E+ + L + Sbjct: 267 TDRKRQERQLRKEKRKTEEALQARDALLGSI 297 >gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 581 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 174/370 (47%), Gaps = 25/370 (6%) Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + E +L ++L DG+ + ++EGII + NR SKLFG+ +++ K Sbjct: 236 KSTMEAVSAEKAKLSTVLNNMVDGVILTDKEGIISTANRTASKLFGFEDKNVSGKSIIEV 295 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560 + ++ ++ L L Q+ + + + + + + S L D Sbjct: 296 VREH---EVDAVLVRCLQTSKEQSAQFESAVTK---RFIRVIAAPVIDGKPSEILLLFQD 349 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E + + + + + +SHE+RTP+T I E + + Sbjct: 350 LTELRNLQT--------------MRKELVGNISHELRTPITGIKAMVETLHDGAID--DK 393 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 ++ I+ + + V++L ++S+IE+GK L EP+ L+ V + I +Q A Sbjct: 394 EAAKDFLTRIESEVDRLAQTVSELTELSRIETGKAELRLEPLDLNVLVKDVIEQLQPLAE 453 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +++ + + A ++P +LAD ++Q +N++ NA+ F GG + + T T+N EVI+ Sbjct: 454 RQQVTVSATLAKDLPEVLADRDRIRQTIINLVHNAVKFNRVGGNVKLYTK-TNNNEVIVD 512 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 + DTG+G++ +L + F + ++ G+GLGL +AK + A+ GK ++ S Sbjct: 513 ISDTGIGISKDDLPHVFERFYKADRARSKS--GSGLGLAIAKHTIQAHNGKIWVASEQGN 570 Query: 801 GTLIEIIFPL 810 G+ PL Sbjct: 571 GSTFSFSLPL 580 >gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180] Length = 970 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 106/559 (18%), Positives = 206/559 (36%), Gaps = 51/559 (9%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLL---- 350 + E + A D E + P F G L A SF Sbjct: 48 RAVLEATTDSLDEIRQARLDLAEGFLHWNLADTPDAPFSRDSALGLLRQAIQSFEQALDV 107 Query: 351 --LTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYR---------SDRTCIAASA 398 + + L D + ++ R +++ IA Sbjct: 108 PGWLDMAAAEPFRRNVLEFERRLIDWNPDDPAKPRTLVQLRILYAELERQAEQLDIAVRN 167 Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLC 455 L + +++ A+T + + I + + + L Sbjct: 168 TLTRLDRQSDHNFALTLGGSALSLLLIIAILAVAIRQQHLMLAARTEAENALRESQTLLQ 227 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ A D + + + G+ L N L G P +I+ K F+++ + Sbjct: 228 TLFRAIPDLVWLKDPNGVFLGCNPRFESLLGLPEAEIVGKTDYDFVDRAQADLFRANDQN 287 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571 ++ + L + ++++ + S+ DI+ K + +L Sbjct: 288 AIAAGGPHV-NEEVLAFASDGHRELIQVVKTPIRDSAGTLIGVLGIGRDITALKLTEQEL 346 Query: 572 SHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613 + + + AE + KS FLA +SHEIRTP+ A++GF ++ + Sbjct: 347 QNHRDHLEDLVAERTAELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRR 406 Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673 R + + I SG L+L+++ D+LD S+IE+ ++ + P L + + + Sbjct: 407 RL----DAESHDLVRKIQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAA 462 Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732 +++ A K + + + + ++ D R +KQ+ L +L+NA+ FT G +I + Sbjct: 463 IMETEAGRKGLELEIAPLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESE 522 Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 EV VRD+G+G+ + F Q S R GTGLGL +++ +V A G Sbjct: 523 DMREVRLRFSVRDSGIGIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGG 582 Query: 791 KFYIFSTPAKGTLIEIIFP 809 + + S +G+ P Sbjct: 583 RLQVTSELGRGSEFWFELP 601 Score = 68.9 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 42/424 (9%), Positives = 91/424 (21%), Gaps = 44/424 (10%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143 W D +G + +G +++G D D D + + Sbjct: 236 LVWLKDPNGVFLGCNPRFESLLGLPEAEIVGKTDYDFVDRAQADLFRANDQNAIAAGGPH 295 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + I + PI G G G + Sbjct: 296 VNEEV-LAFASDGHRELIQVVKTPIRDSAGTLIGVLGIG--RDITALKLTEQELQNHRDH 352 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----------------------LRMKNKV 240 L + +E+ + +Q R+ + Sbjct: 353 LEDLVAERTAELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRRRLDAES 412 Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 L +L +L E + + + ++ + Sbjct: 413 HDLVRKIQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAAIMETEAGRKG 472 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-------PSFLLLTK 353 L P ++ + L + G + L Sbjct: 473 LELEIAPLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESEDMREVRLRFS 532 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRE 408 + + + A +D + + + L S + A RL Sbjct: 533 VRDSGIGIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGGRLQVTSELGR 592 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-----EIEVMQLCSILEATSD 463 S +PF + + + + R + EI + +LE Sbjct: 593 GSEFWFELPFRRDPRALSGVTAAQPSEDAAPRLRGVRVLVVDDTEINRDLMQYVLEGMGA 652 Query: 464 GIAI 467 + + Sbjct: 653 SVVL 656 >gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1125 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 114/624 (18%), Positives = 211/624 (33%), Gaps = 51/624 (8%) Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282 I + P R L + D + + F + Sbjct: 225 RIAGLDAAAPTTRHP----GLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTI 280 Query: 283 YTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337 + + + + + A E D P+ + Sbjct: 281 RDVMVRGTCKTDEAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDP 340 Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 G Y N F A + L ++ Sbjct: 341 DSGEATYVNTRFEDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDG 394 Query: 397 SARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 RL + M+ P A G + + + +E L Sbjct: 395 QWRLQA--RDGSYRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLG 452 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNH 511 LE G N I + +L+G P + +T + + + Sbjct: 453 IALEGAEAGTFDWNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWN 512 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569 + + R E ++ L Y DI+E K + Sbjct: 513 RIHHAVDSRSRFIAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEA 567 Query: 570 KLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 L A AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R Sbjct: 568 ALRAATAEARAATVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQR 627 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 I SG +L +VND+LD+SKIE+G++ L P +L + + + +++++ A + Sbjct: 628 R---LELIRVSGESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKS 684 Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------- 734 + + ++P ++ D ++Q+ N+L+NA+ FTP+G ++++ + + Sbjct: 685 ALTVEARIDPDLPASVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGG 743 Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 E + + DTG+G+ + + KPF Q+ S R G+GLGL + +V G Sbjct: 744 TAEALRFEISDTGIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAI 803 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + S G+ L + P Sbjct: 804 GVESREGAGSTFWFTLALPRATTP 827 >gi|223937383|ref|ZP_03629288.1| PAS/PAC sensor hybrid histidine kinase [bacterium Ellin514] gi|223893934|gb|EEF60390.1| PAS/PAC sensor hybrid histidine kinase [bacterium Ellin514] Length = 1054 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 92/767 (11%), Positives = 218/767 (28%), Gaps = 57/767 (7%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 F G L +++ + +IG + L + Sbjct: 168 FIVRWKPDGTLTFVNQAYSRFFNQSKEGLIGKSFYPFIPEEDREMIRQKVRSL-TPDHPV 226 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 T I T + ++ ++ + G + +R ++ + Sbjct: 227 ASDTHRAILPTGQVFWQQWSDRGLFDKDGNLVELQSVG--RDITARIETEEELRRSEENY 284 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L E + + ++ + + T + Sbjct: 285 RTLVEQSQDLIWAIDLQARFTFLNQAAYKTLGYRPEELLGKPFTEFVPPEHVPTYQAAFE 344 Query: 263 ---TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYF 315 + + +L + + ++++ Sbjct: 345 ENIRTGKDTLDYESFLVRKDGTIVALSANATVIRDSQGNPVGITGISKDISERIRAEQAL 404 Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + E V + ++ ++YA P L Y + + ++ L Sbjct: 405 KDSEKRYELAVSGSAAGLWDWNILTDEIYYA-PRLRELLGYSQNEFPDRLSSVNEKLHPD 463 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 A L R T RL T + + + G Sbjct: 464 DYERVWAAIREHLERR--TTYNIEFRLLTKTGD---YHWFLGRGQALWEESGKPYRMAGS 518 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVED 491 + + + ++ + + + + + + E +L + A +++G E Sbjct: 519 ISDITERKYTEQALRESEERFRQLANTMDEVFWMNSLLPE-RVLYVSPAFFRIWGVSPEA 577 Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + P + + T + + K+ Sbjct: 578 LYQNPRLWLESIIPGDRQRVRDLYDNFFKNKAVPTYSAEYRIRRSDGSQRWISDTGSKIK 637 Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI 603 D++E K + + + ++ ++H+ LT I Sbjct: 638 NERGEAYRVCGIARDVTERKLAEENHAAWEAKLQQSQKMDAIGRLAGGIAHDFNNILTVI 697 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 G + + Q + E+ I++S D+V +L S+ + + +P+ Sbjct: 698 SGNA-RMARQDLPAGHS--LQEHLTEIEKSSERATDLVRQILAFSR----QQEMERKPLY 750 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 L V +A+ ++ I IR+++ +++ I A+ V Q+ +N+ +NA H + G Sbjct: 751 LAPVVEDAVKFLRSTLPA-SIEIRSNYESHLLPISANATQVNQVIMNLGTNASHAMNNNG 809 Query: 724 QIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 + + V L ++D G G+ L PF + Sbjct: 810 LLEVRLDMVTVDANTAGTVPDLHQGRYVRLSMQDAGSGIDTSILPHIFDPFFTTKSP--- 866 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G+GTGLGL + ++ ++ G + + KG+ + FP + P Sbjct: 867 -GQGTGLGLSVVHGIMKSHGGAVTVETEVGKGSAFNLFFPALEVEIP 912 Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats. Identities = 52/520 (10%), Positives = 144/520 (27%), Gaps = 32/520 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 W I+ G I+ + + + + + G + + D K + Sbjct: 43 IWQINPAGETLYINPAMLRMLELEKPEDLAGRTHHSFFTPESLVLMANEHDTRKVGTSSN 102 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + L G +P+ + P+ + + G N ++ ++ F Sbjct: 103 YEAELLSRNGR--KLPVHVCGSPVLNPDGTLQSL--IGTFLDNTARKQAEESARKSEELF 158 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYP 260 + E + K + ++K S + +D + +K Sbjct: 159 RAIVEDQNEFIVRWKPDGTLTFVNQAYSRFFNQSKEGLIGKSFYPFIPEEDREMIRQKVR 218 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 LT + + + ++ L + E S + +E Sbjct: 219 SLTPDHPVASDTHRAILPTGQVFWQQWSDRGLFDKDGNLVELQSVGRDITARIETEEELR 278 Query: 321 LTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E V++ + + + N + Y+ + + Sbjct: 279 RSEENYRTLVEQSQDLIWAIDLQARFTFLNQAAYKTLGYRPEELLGKP------FTEFVP 332 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 ++ + RT + +A++ + + GI Sbjct: 333 PEHVPTYQAAFEENIRTGKDTLDYESFLVRKDGTIVALSANATVIRDSQGNPVGITGISK 392 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVED 491 + + ++ ++ + + ++ G+ + + + + +L GY + Sbjct: 393 DISERIRAEQALKDSEKRYELAVSGSAAGLWDWNILTDE----IYYAPRLRELLGYSQNE 448 Query: 492 ILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + L + + + E L +E L T + R Sbjct: 449 FPDRLSSVNEKLHPDDYERVWAAIREHLERRTTYNIEFRLLTKTGDYHWFLGRGQALWEE 508 Query: 550 FSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 Y + ++ DI+E K + L +++ + ++ + Sbjct: 509 SGKPYRMAGSISDITERKYTEQALRESEERFRQLANTMDE 548 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 46/401 (11%), Positives = 110/401 (27%), Gaps = 21/401 (5%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAH 249 + D+++ L E + + ++ + Sbjct: 22 EQSSQARDQQYRLLAENTVVGIWQINPAGETLYINPAMLRMLELEKPEDLAGRTHHSFFT 81 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + ++ +S + + + N + + N + Sbjct: 82 PESLVLMANEHDTRKVGTSSNYEAELLSRNGRKLPVHVCGSPVLNPDGTLQSLIGTFLDN 141 Query: 310 SLSAYFDEGENLTPETVDKCPIPF--FVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG 364 + +E + E F+ G L + N ++ I + Sbjct: 142 TARKQAEESARKSEELFRAIVEDQNEFIVRWKPDGTLTFVNQAYSRFFNQSKEGLIGKSF 201 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 P + + + RS ++ H + ++ Sbjct: 202 -------YPFIPEEDREMIRQKVRSLTPDHPVASDTHRAILPTGQVFWQQWSDRGLFDKD 254 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484 + + + + ++ +++E + D I I+ + N+A K Sbjct: 255 GNLVELQSVGRDITARIETEEELRRSEENYRTLVEQSQDLIWAIDLQARFTFLNQAAYKT 314 Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544 GY E++L KPFT F+ E + TL+ + K+ +++L Sbjct: 315 LGYRPEELLGKPFTEFVPPEHVPTYQAAFEENIRTGKD-TLDYESFLVRKDGTIVALSAN 373 Query: 545 IKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 + S + DISE + + L ++K E Sbjct: 374 ATVIRDSQGNPVGITGISKDISERIRAEQALKDSEKRYELA 414 Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 8/153 (5%) Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVF 500 ++ + Q + E T GI IN G L N A+ ++ ED+ + F Sbjct: 20 RTEQSSQARDQQYRLLAENTVVGIWQINPAGETLYINPAMLRMLELEKPEDLAGRTHHSF 79 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556 + +M + + + E L + L + + + Sbjct: 80 FTPESLVLMANE-HDTRKVGTSSNYEAELLSR--NGRKLPVHVCGSPVLNPDGTLQSLIG 136 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 T D + KQ + ++++ +++F+ Sbjct: 137 TFLDNTARKQAEESARKSEELFRAIVEDQNEFI 169 >gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797] gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797] Length = 592 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 159/371 (42%), Gaps = 21/371 (5%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + R+++ +L ++LE +G+ IN +L N + +L + ED K Sbjct: 241 EMAERVRQLQASGDRLSTVLEGMVEGVIAINERQHVLFANESAGRLLFFSPEDAEGK--- 297 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558 E + +TE+L Q +E + +++L + + + Sbjct: 298 ALFESVRNHQLQKSVTEVLKTLEPQRMEVELEST--SDRILGVTTTPLPGTPCPGLVIVL 355 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 D++E ++ + S + +F+A VSHE++TPL++I ++E + Sbjct: 356 FDMTELRRLE--------------SLRQEFVANVSHELKTPLSSIKAYTETLIRGAMD-- 399 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + I+ + + ++ DL+ ++ IESG + L V + Q Sbjct: 400 DPEINKTFLLRIEEQADRLHQLILDLISLASIESGNQVFDIINIELRPFVESCLVDQQKV 459 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738 A K+I + + ++ AD + QI N+++NAI +TP G+I I V+ Sbjct: 460 AESKQIELLIEESEPGIKVKADEEGLHQILGNLINNAIKYTPDQGRITIRWQREEGNMVL 519 Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798 L+V+DTG+G+ + + F ++ ++ GTGLGL + K +V + G + S Sbjct: 520 LQVQDTGIGIAEKYQARLFERFFRVDKARSRELGGTGLGLSIVKHLVQSFNGTIGVTSKV 579 Query: 799 AKGTLIEIIFP 809 +G+ + P Sbjct: 580 GEGSTFSVRLP 590 >gi|120556580|ref|YP_960931.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] gi|120326429|gb|ABM20744.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8] Length = 966 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 107/401 (26%), Positives = 196/401 (48%), Gaps = 10/401 (2%) Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473 T + A R R+ + +L +I++A DGI I+ GI Sbjct: 232 TILALTIAFVTVTLSLLASGVNAVARYRALMRRSQETASELRTIVDAAVDGIIKISDRGI 291 Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531 +LS N + ++FGY ++++ K + + + YL L R+ + + Sbjct: 292 VLSFNESAERIFGYRADEVVGKNINMLMPNPHRDAHDGYLKNYLRTGKRKIIGSGREVWA 351 Query: 532 STKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 K+ + +R+ I +L S + + DISE + + L AK+ AE+ ++ KS FL Sbjct: 352 LHKDGHQIPVRLGIGESRLGGISTFVGFITDISERHRMETDLRRAKEEAEQAAAAKSAFL 411 Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649 A +SHEIRTP+ AIIGF++++ + + + + S +L+++ND+LD +K Sbjct: 412 ANMSHEIRTPMNAIIGFTDLVLDTPL----DETQARHLGVVKTSARSLLNLLNDILDTAK 467 Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709 ++ G L +L + I+ L A K + + + D ++Q+ L Sbjct: 468 LDGGHTELELHDFNLRRLCDQVIATQSLNAARKGLYLTLDYQAG-EYYQGDPLRIQQVVL 526 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+LSNA+ FT +GG + + S +V++RV DTG+G++ +++ +PF Q +S Sbjct: 527 NLLSNAVKFTQTGG-VTLKVQEPSVHKVVIRVEDTGIGISADRIDRIFEPFTQADSSMTR 585 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLG +A+ +V+ G + S+P +G++ ++ PL Sbjct: 586 RFGGTGLGTTIARQLVELMGGTISVTSSPGEGSVFQVELPL 626 Score = 43.1 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 34/369 (9%), Positives = 91/369 (24%), Gaps = 18/369 (4%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY-- 144 I G + +E + G A +++G + + H D + ++ + L+ Sbjct: 285 KISDRGIVLSFNESAERIFGYRADEVVGKNINMLMPNPHRDAHDGYLKNYLRTGKRKIIG 344 Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + +G + V + + + S F GF + + +R + Sbjct: 345 SGREVWALHKDGHQIPVRLGIGESRL----GGISTFVGF--ITDISERHRMETDLRRAKE 398 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY----YAHKDDVLKTEK 258 + K + + + + T+ Sbjct: 399 EAEQAAAAKSAFLANMSHEIRTPMNAIIGFTDLVLDTPLDETQARHLGVVKTSARSLLNL 458 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + + + N Q+ + ++ + Y + Sbjct: 459 LNDILDTAKLDGGHTELELHDFNLRRLCDQVIATQSLNAARKGLYLTLDYQAGEYYQGDP 518 Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 + ++ G + + V+D G+S Sbjct: 519 LRIQQVVLNLLSNAVKFTQTGGVTLKVQEPSVHKVVIRVEDTG--IGISADRIDRIFEPF 576 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 M R T + + ++ ++T P E + E G+ ++ Sbjct: 577 TQADSSMTRRFGGTGLGTTIARQLVELMGGTI-SVTSSPGEGSVFQVELPLPTGLAVDED 635 Query: 439 DTRINKRKM 447 + + Sbjct: 636 TLADQEVAL 644 >gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate regulation [Bacillus halodurans C-125] Length = 589 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 222/562 (39%), Gaps = 38/562 (6%) Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + + E +E ++ + ++ + E +H + P + Sbjct: 50 AASMVENEAVLFNEVQTLTEEISQKLDARVTIILADGTVVGESAADPAEMENHADRPEFT 109 Query: 313 AYFDEGENLTPETVDKC---PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + + + +P ++ + Y + L + Sbjct: 110 ELEEGIVRYSTTVETELLFYAVPIQNEANETIGYV------RLGLPIEAVNSVNRTLWAI 163 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 L I V +++ + + E ++ + Sbjct: 164 LIVSFTIAFLVIVSVTYRIANQMIRPIES-ATVVANKLAEGDYQARTSEESRDEVGQLNR 222 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 + +++ + +++ +L +++E G+ +IN G I N+ +F Sbjct: 223 SINVLAYNLEQLTKRHQVQ--KERLETLIENMGSGLILINTRGDISLINKTCHDIFQEDT 280 Query: 490 EDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + L + + ++ ++ + L + + +++ Sbjct: 281 DLWLHQLYHDVIKHKEIIKIVQDIFLTEKRQRRQVKLPIHLEYRHFDVHGAPI---VREN 337 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 +L HDI+E K+ + + DF+A VSHE++TP+T+I GF+E Sbjct: 338 GKLKGIALVFHDITELKKLEQV--------------RKDFVANVSHELKTPVTSIKGFTE 383 Query: 609 VIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 + + G + + + + + + I + + +++DLL++SKIE L+++ +L Sbjct: 384 TLLD---GAMHDEQLRDQFLHIIWKESERLQSLIHDLLELSKIEQNYFQLNWQQTNLFAV 440 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 VSE ++L++ A EK I I S A + D +KQIA+N+++NAI +T +GG+I + Sbjct: 441 VSEVMTLLKGKAEEKGIDISLS-AEGSFDLEGDPERLKQIAINLVNNAITYTSNGGRIDL 499 Query: 728 STTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + +V+ V DTG+G+ E+ + + F ++ ++ GTGLGL + K +V+ Sbjct: 500 --ALKDHGDVVEFEVNDTGIGIRESEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLVE 557 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 A+ GK + S KGT I F Sbjct: 558 AHQGKILVESEFGKGTTFTIQF 579 >gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911] Length = 609 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 176/393 (44%), Gaps = 27/393 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q I + ++ + + E E +L S+L +DG+ +R G ++ N +K Sbjct: 237 DEIGQLAITFNSLTKKLQEAQATTEGERRKLSSVLSYMTDGVIATDRRGRVILINEPAAK 296 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + P E +L P L L E S+ L + E + Sbjct: 297 MLNVPRETVLSSPIVNLLGLEEDYTFEELLAERESVILDYSTETTPYVLRAN-----FSV 351 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 I K+ F + +HDI+E ++ + + +F+A VSHE+RTPLT + Sbjct: 352 IQKETGFVNGLITVLHDITEQEKIDLE--------------RREFVANVSHELRTPLTTM 397 Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662 + E + G + + ++ N ++ +VNDLL +SK++S + E V Sbjct: 398 RSYLEALAE---GAMHDEDIAPQFLNVTRTETERMIRMVNDLLQLSKLDSKDYRMKKEWV 454 Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722 + + + I E+ + + + + + D + Q+ NI+SNA+ ++P G Sbjct: 455 NFVDFFNRIIDRFDFS-KEQNVTFQRNLPEHAAFVEIDEDKLTQVVDNIISNALKYSPEG 513 Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 GQ+ + E++++R+ D GVG+ L+K + F ++ ++ + GTGLGL +AK Sbjct: 514 GQVSFNI-VEQEEQLLIRISDQGVGIPKDNLDKVFERFYRVDKARTRKLGGTGLGLAIAK 572 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 +V+A+ GK + ST KGT I P + Sbjct: 573 EVVEAHDGKIWAESTEGKGTTISFTLPFVRSDE 605 >gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio fructosovorans JJ] Length = 576 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 113/578 (19%), Positives = 219/578 (37%), Gaps = 55/578 (9%) Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343 +Q +++ L H +Y+ E + E + +F Sbjct: 4 PGRQTADAADSDAGRRDRLLGFGEHSVSKSYYPELKRRLEELERF--RSLLEQTGEAIFL 61 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 + + + + LL P + L+ AA + Sbjct: 62 VDGRTGRIADTAGAAGVMLRQEREALLGLPFAALLPMEAVEHLHGLFSGDFAAGRLETVL 121 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 + + + + + + + ++ + + I+E ++ Sbjct: 122 TRPGGKGTTPAVEMTFRMAKGEDGPIAVIVARDVSERKKSELALRRAEEKYRGIVENAAE 181 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 GI + +G ++S N AV+ + GY + + ++Q + Q Sbjct: 182 GIFQSSLDGRLISANPAVATILGYASPREMMRRVKSIIDQTVAREDDRQRIRAELERYDQ 241 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA----- 574 TK L+ I +++ ++ + ++ D++ KQ + L Sbjct: 242 VKNLEVQLVTKSGDLIWGLINARRIRDAAGEAERFDGSLQDVTIRKQAEQTLLRYHDELE 301 Query: 575 ---------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 ++ A+ + KS+FL+ VSHEIRTPLT+++GF+ Sbjct: 302 RRVAERTAELTRANERLTHEVTIRKRAEEAADAANRAKSEFLSMVSHEIRTPLTSVMGFA 361 Query: 608 EVIKNQRFGPL------GNPRYI-------EYANYIDRSGNLVLDIVNDLLDISKIESGK 654 VI +R L +PR E I G + ++ND+LD++K+E+GK Sbjct: 362 -VIIEKRLDQLFNRLLGDDPRQRRQAEQIMENLGIIVSEGERLKHLINDVLDLAKLEAGK 420 Query: 655 MNLHFEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 M E V E V +S + L A R+ ++TS +P ++ D + Q+ +N++S Sbjct: 421 MAFKHERVDPAEVVRHVMSASEGLLAATPRVALKTSIQGRLPEVIGDRDRLIQVLVNLVS 480 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ FT G + T++ V++ V DTG+G+ E K + F QI + + +G Sbjct: 481 NALKFTEQGS-VTCR-ARTADGYVVIDVADTGIGIPEAEQHKVFEKFNQIGATLTNKPKG 538 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 TGLGL + K +V+++ G+ S G+ P+ Sbjct: 539 TGLGLAICKHIVESHGGRISYVSRFGSGSTFTFALPIA 576 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 20/208 (9%), Positives = 54/208 (25%), Gaps = 11/208 (5%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 + G L + + +G + + + R+ + D ++ I L+R + Sbjct: 183 IFQSSLDGRLISANPAVATILGYASPREMMRRVKSIIDQTVAREDDRQRIRAELERYDQV 242 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---- 199 + + + + A I E F G + + R Sbjct: 243 KNLEVQL-VTKSGDLIWGLINARRIRDAAGEAERFDG--SLQDVTIRKQAEQTLLRYHDE 299 Query: 200 -LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTE 257 + E+ + + + E + R K++ S+ + Sbjct: 300 LERRVAERTAELTRANERLTHEVTIRKRAEEAADAANRAKSEFLSMVSHEIRTPLTSVMG 359 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTK 285 ++ L + + + Sbjct: 360 FAVIIEKRLDQLFNRLLGDDPRQRRQAE 387 >gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 1003 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 108/490 (22%), Positives = 201/490 (41%), Gaps = 39/490 (7%) Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLS-----DNNAIKPVMLYRSDRTCIAASARLH 401 + + Y +DD+ G+ +D P+ + ++L A L Sbjct: 240 ADDHIAGYAQIDDLRGGKGIVLRIDMPRDILQYGLSASRYYLLILLLVTGAFAAVILTLI 299 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-----------DTRINKRKMEIE 450 + T + + E D + +++ Sbjct: 300 ERRILARIISLSTQVAQIGRVGNHQERVALSGNDEISQLGDAINRMLNDLAQSAQRLIQS 359 Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVM 509 + ++E + + I + + E I+ N A ++L GY ++ P FL + Sbjct: 360 EARYRQLVEISPEAIIVHDNE-QIIYINPAGARLLGYADSSRLIGSPAAPFLPTALHNKT 418 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + E+ S + L L +S + + H+I+E KQ + Sbjct: 419 DD---------GAIRYERDLTLSNGQTVTLDLIAAPFVADGASVWQVVAHNITERKQTEE 469 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L +A+ AE+ S KS FLA +SHE+RTPLT IIG+++ + R + Sbjct: 470 ALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYAD-LITLATQQGEFNRIRDDITR 528 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 + +G +L I+NDLLD+SKIE+G+M +H P S+ E ++ + L A +R + + Sbjct: 529 VRNAGKHLLAIINDLLDLSKIEAGRMEIHIAPFSVPALAEEVVASMDLLAQTRRNTLILT 588 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----------NEEVIL 739 + + +D V+Q+ N++ NA FT G + ++ ++ + ++ Sbjct: 589 IDPTVGVMHSDDVRVRQVLYNLVHNACKFTEDG-VVTVTIARSALESTVHVNGHSARIVF 647 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 + DTG+GMT+ ++ + + F Q + + GTGLGL L++ +V G + S P Sbjct: 648 TISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLALSRHLVRMLGGDITVTSKPG 707 Query: 800 KGTLIEIIFP 809 GT + P Sbjct: 708 VGTTFVVTLP 717 Score = 54.6 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 6/171 (3%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + E + V+ P V+ + + Y NP+ L Y + + Sbjct: 350 AQSAQRLIQSEARYRQLVEISPEAIIVHDNEQIIYINPAGARLLGYADSSRLIGSPAAPF 409 Query: 369 LL--DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L K D L S+ + + + + + Q E Sbjct: 410 LPTALHNKTDDGAIRYERDLTLSNGQTVTLDLIAAPFVADGASVWQVVAHNITERKQTEE 469 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT---SDGIAIINREGII 474 + E+ ++ + +L + L +D I + ++G Sbjct: 470 ALRNARDWAEEASRAKSRF-LANMSHELRTPLTTIIGYADLITLATQQGEF 519 >gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 606 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 168/393 (42%), Gaps = 20/393 (5%) Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-RAVSK 483 E +E E + R ++++ E L IL+A D + + +R+G ++ +N + Sbjct: 71 GEGADSRSLEAEILRLRQREKELLHERQMLKDILKAIPDMLTVHDRDGNVMFSNCKPNED 130 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + + + + Y+ ++ ++ +E + K I Sbjct: 131 CWQHHGGTKHGLRCYQCHFHGDRNCEDCYIPDVFDSGEQRVVEM----YNPDMKSFR-SI 185 Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + + + D++ + + +L AK+ AE KS+FLA +SHEIRTP Sbjct: 186 TVFPVRDGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTP 245 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659 + ++G + + + EY + S +L ++ND+LD SKIE+G + L Sbjct: 246 MNGVLG----MLDLAMTTSLDEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQ 301 Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718 + L + +S ++ A E+ + + + ++P + D ++QI +N+L NA F Sbjct: 302 QVFRLSKRLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKF 361 Query: 719 TPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774 T G Q+++S + V+DTG G+ E+ F Q S R +G+ Sbjct: 362 TDQG-QVVLSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGS 420 Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 GLGL + K + G + STP +G+ Sbjct: 421 GLGLAICKRLTGLMGGDIKVRSTPGEGSTFVFS 453 >gi|163803362|ref|ZP_02197238.1| sensor histidine kinase FexB [Vibrio sp. AND4] gi|159172824|gb|EDP57666.1| sensor histidine kinase FexB [Vibrio sp. AND4] Length = 788 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 176/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ L G ++ + + ++ + + T E+ + Sbjct: 182 RAMEVLTGRKEHQLVGLSPWDVYSKEVAKHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + +Y I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TQEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPTPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ + EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADLEDDFATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELAEP 516 Score = 41.9 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148 +A G + + G +++G+ DV + + + Sbjct: 172 NADGVFSGCNRAMEVLTGRKEHQLVGLSPWDVYSKEVAKHIVDTDQKVFADNQAITYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|90421906|ref|YP_530276.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gi|90103920|gb|ABD85957.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 843 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 126/699 (18%), Positives = 242/699 (34%), Gaps = 43/699 (6%) Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFSGFRGFGIVH 185 ++ + LL+ + T+ I+ + + RE SG R Sbjct: 170 DHAVDALLESGEGFQLNLV------TSTGRSIEAVGRAVGGQAIVRMRELSGLR-----R 218 Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245 + + ++ ++ + V+ E Sbjct: 219 ELAEMTQRHKTLQEETEMLRDFAAAAPWPIWTRRDAGELNFANAAYARATEAGSVAEAIE 278 Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305 + ++ ++ + + + + Sbjct: 279 RNLELLESNDRTALSRALNDNANFSARLPIVVRGERRIYDVHAMKV---RGGSAGAAIDA 335 Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364 +L A T+D+ V+ L + N S+ L Sbjct: 336 SEAYALGAALVRMAEAHRRTLDQLSSGVAVFDEQHRLAFYNDSYRRLWD----------- 384 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRENSLAMTFIPFEKA 421 L D++ + + R RLH + + + ++P +A Sbjct: 385 -LDRAFLDSNPDDSSVLDRLRAARKLPEQPNFREWKMRLHEAYRAVDPAKDVWYLPDGRA 443 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILST 477 G D ++ L L+ ++ +A+ G Sbjct: 444 VSIVTTPNPEGGVTYLFDDVTESLELARRFDGLINVQRETLDNLAEAVAVFGSNGCARLF 503 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEE 536 N ++++ E + +P + + + + + L + +I + E Sbjct: 504 NPPFARMWNLSPEALQLQPHIETVVDWCRPLFDDPAIWQTLRGAITGIENRIAIPLKLER 563 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + S+ + LT DI++ + + L + E K DF+ VS+E+ Sbjct: 564 RDGSVLNCMTMPLPDGATMLTFQDITDTENVERALRERNEALETADQMKVDFVHHVSYEL 623 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 R+PLT IIGF+ + + GPL + EY +YI S N +L I+N++LD++ I++G M Sbjct: 624 RSPLTTIIGFAHFLSDPSTGPLT-EKQEEYLSYITTSTNALLAIINNILDLATIDAGAMT 682 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L+ V + +A+++AI +Q I++ + A ++ +AD R V Q+ N+L+NA+ Sbjct: 683 LNLGQVDIRKAIADAIEGIQDRLARDHIVLEVNAAPDVGHFIADERRVVQVLYNLLANAV 742 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 F+P I +S T V+ V DTG G+ EK F S R G GL Sbjct: 743 GFSPQHAAITLSAKRTEQ-TVVFTVTDTGPGIPPDVKEKVFDWFE--SRSNGSRHRGAGL 799 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GL L ++ V+ + G I S KGT + FP+ + Sbjct: 800 GLSLVRSFVELHGGNVRIDSVVGKGTTLTCSFPIDQSQQ 838 >gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142] Length = 1195 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 174/372 (46%), Gaps = 29/372 (7%) Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + T+DGI + + + K+ GY KP L + +V + L +++ Sbjct: 583 VSGTNDGIWDWDLRNDTVYYSPVWMKILGYE-----NKPLPNLLSTWSDNVHSDDLEQVM 637 Query: 518 S------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567 + E I ++ L + K + T+ DI+E K Sbjct: 638 KDVQNHLQGNTKIYENIHRIRHRDGHYLWIETKGKCIQDQQGQPYRLVGTITDITEKKVA 697 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L AK+IAE ++ KS+FLA +SHEIRTP+ AI+GF + + ++R + + R Y Sbjct: 698 QEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCD-LLDKR---ITDERSRHYL 753 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 + G ++L ++ND+LD+SKIESGK+ + EP+ L + E + A EK I + Sbjct: 754 ESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVETAKEKNIELL 813 Query: 688 TSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE--------V 737 + N +P ++ D ++QI N++ NA+ FT G +I + + +++ + Sbjct: 814 VNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSDKNHHPSYCSL 873 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G+ + ++ F Q + GTGLGL + + + G + S Sbjct: 874 EISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEMLKGIIDLESE 933 Query: 798 PAKGTLIEIIFP 809 KG++ + FP Sbjct: 934 LGKGSIFTVSFP 945 >gi|78187217|ref|YP_375260.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] gi|78167119|gb|ABB24217.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium luteolum DSM 273] Length = 896 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 123/750 (16%), Positives = 270/750 (36%), Gaps = 52/750 (6%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154 + + + + ++ + + ++ + + ++ + G Sbjct: 169 IVQCNSAAEAMMEVDRTVLLHRSIHSIHPPDVLEAQLCAFERQAKGELRVIESEVLTASG 228 Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKKFSHLHEIKKG 213 + V + A + + + G + + + + ++ Sbjct: 229 KRIPVSVTAAQVVVNDKP------CLIGAFRDITESKEAEQAIRLANQQLQASEQQLMAA 282 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 + ++ + + + + ++ + + + L L SE+ + + Sbjct: 283 NQQLQASEQQLMAANQ--QLQASEQQLMAANQQLQASEQQLMVANQQLQASEQQLMAANQ 340 Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-----------------AYFD 316 K G L N S + S+ F Sbjct: 341 QLMASEQQLMAKLGVQGLLANISTYLMTPVGEVLDESIEHVLGLVGSFTKADRCFIFQFT 400 Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + + T + C HG A F + + +S L K+ Sbjct: 401 DDGLVVSNTYEWCAAGVAAEKHGLQQLAVDEFPWWMERIKRHEPIFIPDVSALPVEAKVE 460 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + A + + NS + + P + + Sbjct: 461 KEHLERQGIRSLVAVPVSTAGFSGGFLGLDWVNSSVLNLH----EDHIPLLQLASDLIFG 516 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495 ++ + +++ + +I E+ D A +N G I + ++S FGY ++IL + Sbjct: 517 SLNREKSAQQIWEREAKYRAIFESIQDVYAEVNLATGTIEEISPSISS-FGYTRDEILHR 575 Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 ++ + L ++ + TK + +++ + I + Sbjct: 576 QSLDYYVNPEERDRLISALADM-----GSLRDFEAHFLTKSGEPITVSLAISLIKGVPDG 630 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 TM DISE K+ + ++ ++ K+DF++ VSHE+RTPL +I+GFS + Sbjct: 631 LMKIVGTMRDISERKKHECQI-------QENIRLKNDFISSVSHELRTPLFSILGFSSTL 683 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + G L +E+ + I + ++ D+L IS+I+SGK + + VS Sbjct: 684 LKE-SGSLDPATRLEFTSIIHDESVRLSSLIEDILTISRIDSGKAKYSRQIFDPVKPVSA 742 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 +++++ A EK I + + R++ D S+KQ+ +N+L NA+ FTP GG++ +S + Sbjct: 743 VVAILRRQAEEKGIELVEEKPDREHRVVFDQDSLKQVMMNLLGNALKFTPKGGRVKVSIS 802 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 V + V DTG+G+ + EK F + S + EGTGLGL + K +V+ G Sbjct: 803 GAEE-MVSITVDDTGIGIAASDHEKIFDRFYRSVPS-AFQIEGTGLGLAIVKDIVEMQGG 860 Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 + S +G+ ++ + + D + Sbjct: 861 SIGVQSELDRGSQFTVLLKRAEDAADEDVV 890 Score = 114 bits (286), Expect = 6e-23, Method: Composition-based stats. Identities = 32/283 (11%), Positives = 80/283 (28%), Gaps = 8/283 (2%) Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364 R+ L E + VD I + Y G+L + L + Sbjct: 4 RDLERLDNENRELSSRMRAAVDGAGIGIWEYDIAGSLLVWDDWMYRLYGIEPD----RFS 59 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 G D+ + + + + + + ++ Sbjct: 60 GAYEAWVNGLHPDDMERAAREADEAMTGGKPFDTEFRVVHPSGD-VHHIKASAVVQYDEA 118 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSK 483 + GI + + R + ++ + QL ++ E D + + + + I+ N A Sbjct: 119 GVPLKMIGINYDITERRQLEDELAAKAAQLHALYEGIPDALLVADIDTKQIVQCNSAAEA 178 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + +L + + + + +E L ++ + +S+ Sbjct: 179 MMEVDRTVLLHRSIHSIHPPDVLEAQLCAFER-QAKGELRVIESEVLTASGKRIPVSVTA 237 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + C DI+E K+ + + A + + Sbjct: 238 AQVVVNDKPCLIGAFRDITESKEAEQAIRLANQQLQASEQQLM 280 >gi|91788333|ref|YP_549285.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] gi|91697558|gb|ABE44387.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666] Length = 1049 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 103/579 (17%), Positives = 196/579 (33%), Gaps = 89/579 (15%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 SA ++ P FV N + L Y + + L Sbjct: 191 SAEVAAVNRFLDSVIETIPDMIFVKDAADLRFVRFNRAGEELLGYSRDELVGKNDY--DL 248 Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429 + + +L R I I + + + + Sbjct: 249 FPEAEADAFTSKDQEVLTRGMVLDIPEE----PIHTRNKGDRILHTKKIPIFDSKGRPLY 304 Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL----------------------------------- 454 GI + + + + + +L Sbjct: 305 LLGISRDVTEKKKLEDALRKRNEELSKSQEDLQWSNSELNKLRLALEARVNQRTQQLTAV 364 Query: 455 -----------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502 ++ D + ++ G++ N +FG+ ++ + KP + Sbjct: 365 VEALRESEARTRLTIDTALDAVVAMDAHGLVREWNAQAETIFGWKRDEAIGKPLAGLVIP 424 Query: 503 QNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTM 558 + L L+ + L +E + + + I L +S + Sbjct: 425 RQHREGHARGLERFLATNEGPILSQRLELTALHREGREFPVELSITPMLLQGEWTFSAFL 484 Query: 559 HDISEWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 DI++ KQ + +L A++ A+ + KS FLA +SHEIRTP+ Sbjct: 485 RDITDRKQMEERTLNLNRELEQRVAQRTTELVAAREAADTANRAKSTFLATMSHEIRTPM 544 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 + G E++ + S +L I++D+LD SKIE+GK+ + E Sbjct: 545 NGMFGMLELLGLTELDT----DQRATLAIVRESSQSLLCIIDDILDFSKIEAGKLTVRPE 600 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFT 719 S+ + + ++ A+ + +L++ I P ++ D + QI N++SNA+ FT Sbjct: 601 VASIKDVIEHVRNMYAGNASGRGLLLKHGTDPQISPALMFDPLRLGQILNNLVSNALKFT 660 Query: 720 PSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 G I I ++V V DTG+G++ + ++ +PF Q GTG Sbjct: 661 SRGS-IEIKAELIARTNGEDQVRFVVTDTGMGVSAEDQQRLFQPFTQGGGDTARWAGGTG 719 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYD 812 LGL + + + G + S KGT + + P+ D Sbjct: 720 LGLTICRRLAGMMNGTVEMVSELGKGTTMILTLSLPIAD 758 Score = 76.6 bits (187), Expect = 2e-11, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 11/198 (5%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 I + + H I +R L + + + E + R + Sbjct: 143 GVEIYFNDQRHFITADRLQILNLLLS---TYDAAIQRNKDLTQTQESLGQRSAEVAAVNR 199 Query: 451 VMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L S++E D I + + + + NRA +L GY ++++ K + Sbjct: 200 F--LDSVIETIPDMIFVKDAADLRFVRFNRAGEELLGYSRDELVGKNDYDLFPEAEADAF 257 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 E+L+ + + + + + + + L + S D++E K Sbjct: 258 TSKDQEVLTRGMVLDIPEEPIHTRNKGDRI-LHTKKIPIFDSKGRPLYLLGISRDVTEKK 316 Query: 566 QEKNKLSHAKKIAEKESS 583 + ++ L + K Sbjct: 317 KLEDALRKRNEELSKSQE 334 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 41/387 (10%), Positives = 82/387 (21%), Gaps = 32/387 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-TL 149 A + + +G +++G D+ D + + Sbjct: 218 ADLRFVRFNRAGEELLGYSRDELVGKNDYDLFPEAEADAFTSKDQEVLTRGMVLDIPEEP 277 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + +PI+ GI L K+ L + Sbjct: 278 IHTRNKGDRILHT-KKIPIFDSKGRP--LYLLGISRDVTEKKKLED---ALRKRNEELSK 331 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 ++ E + + R + + + + T L Sbjct: 332 SQEDLQWSNSELNKLRLALEARVNQRTQQLTAVVEALRESEARTRLTIDTALDAVVAMDA 391 Query: 270 PEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + L H +EG L+ Sbjct: 392 HGLVREWNAQAETIFGWKRDEAIGKPLAGLVIPRQHREGHARGLERFLATNEGPILSQRL 451 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 ++ G F + + ++ S L + + Sbjct: 452 ELTA-----LHREGR------EFPVELSITPM-LLQGEWTFSAFLRDITDRKQMEERTLN 499 Query: 386 LYRSDRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ---NGIEPE 436 L R +A +AR NR S + + E G+ Sbjct: 500 LNRELEQRVAQRTTELVAAREAADTANRAKSTFLATMSHEIRTPMNGMFGMLELLGLTEL 559 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD 463 D D R + L I++ D Sbjct: 560 DTDQRATLAIVRESSQSLLCIIDDILD 586 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 12/158 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQN----T 142 +DAHG ++E + + G + IG L + + L + Sbjct: 389 MDAHGLVREWNAQAETIFGWKRDEAIGKPLAGLVIPRQHREGHARGLERFLATNEGPILS 448 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 + T EG P++L+ P+ E++ F F + L++ Sbjct: 449 QRLELTALHREGR--EFPVELSITPML-LQGEWT-FSAF--LRDITDRKQMEERTLNLNR 502 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240 + + +E D ++ M +++ Sbjct: 503 ELEQRVAQRTTELVAAREAADTANRAKSTFLATMSHEI 540 >gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 592 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 151/364 (41%), Gaps = 29/364 (7%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E QL SIL + +D + NR+ IL +N +L + + + Sbjct: 255 QEKEQLSSILTSMTDSVITFNRDKTILVSNPPAERLLQKWFVE-KGLDSSKPIPDE---- 309 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567 + L +L+ + + E + S+ I S + D +E + Sbjct: 310 LYQMLDHVLNFEDQLDEEFEM-----GKSYYSITISPLYSRDSIRGAVAVIRDKTEETKL 364 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + KSDF+A VSHE+RTP+ + G+SE I + I+ Sbjct: 365 E--------------KLKSDFIANVSHELRTPIAMLQGYSEAIIDGVVTT--EEERIDMI 408 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I + +V DLLD++++ESG M L+ E V L + A EK + ++ Sbjct: 409 RVIYDESQRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQ 468 Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 ++ I D ++Q+ N++ NAI TP+ G + +S ++V DTG Sbjct: 469 IETDFSDETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSM-INEQNYAKIQVSDTGQ 527 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ +L + F + ++ GTGLGL + K +V+A+ G+ + S +GT Sbjct: 528 GIPQDDLPYVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTF 587 Query: 807 IFPL 810 PL Sbjct: 588 YLPL 591 >gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris StLB046] Length = 512 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 97/423 (22%), Positives = 167/423 (39%), Gaps = 30/423 (7%) Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 I + + + A P + TR IE Sbjct: 118 PIINITKTARELSKGNYRARAFANGPTTIVELRNSINILARNLQDITKTRA------IEE 171 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L +++E + +I+REG I N+ LF P E ++ F + Sbjct: 172 ERLKTLIENMGSALMMIDREGNISIVNKKFQTLFELPKEKLIGNNFMMLGLPKELEKFID 231 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569 ++ + L RQ LE E + + MHD+SE + + Sbjct: 232 HVF-LTELPYRQQLEMEIAN---EVYYEQVYGAPVVGEHGRWLGVVIVMHDVSELVRLE- 286 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + DF+A VSHE+RTP+T+I GFSE + + F + + Sbjct: 287 -------------QIRKDFVANVSHELRTPITSIKGFSETLLDGAFN--DEQMLLSFLTI 331 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I N + +VNDLL++SKIE L P L + + + L K + Sbjct: 332 IHDESNRIQVLVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVE 391 Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749 + IL D+ + QI N+++NAI ++ + + + + V+D G+G+ Sbjct: 392 IEQDA-VILGDVNRLMQIFTNLINNAIAYSKEETTVTLRISANDQYGI-FEVKDEGIGIE 449 Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 E+ + + F ++ ++ GTGLGL + K +++A+ GK + S KGT I++ P Sbjct: 450 KAEISRIFERFYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLP 509 Query: 810 LYD 812 L D Sbjct: 510 LKD 512 >gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B] Length = 710 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 107/585 (18%), Positives = 218/585 (37%), Gaps = 59/585 (10%) Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300 +S+ + + L +E+ + + + + Sbjct: 4 ASVAGDETLPLRRRAESLLAGTAAGDPCLLSREEMARLIHELRVSQVELELQNEELRRTQ 63 Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359 L+H + + D P +F G + AN + + D Sbjct: 64 AELAHT------------RDRYADLYDFAPAGYFTLDARGTVLEANLKGAAMLGRER-DA 110 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPF 418 + +L + A L R T A + ++ ++ + A ++ P Sbjct: 111 LPGNPFSDHIL-----PSDRAAFAAYLARIRETGRAGTLQIRLLRPDGARVWAELSAEPK 165 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGII 474 + + + + + ++ L ++L++ I + + + ++ Sbjct: 166 PPFDPLGAASLRMVA-TDMTEGVLARQD-------LATVLDSAPIPIVKVRVTGDGDRVL 217 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + N A ++LFG ++ L + FL + + ++ T+ Sbjct: 218 VYQNPAAARLFG---DEALERSCKGFLCNKEVCPALAAESGV-------VRDRECAVKTR 267 Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 + + + KLP + M D++E + + L+ A + AE + K+ FLA +SH Sbjct: 268 FGERI-MYKTAHKLPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSH 326 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ ++G +E+ P EY + +S +LDI+ND+LD S+IE+G+ Sbjct: 327 EIRTPMNGVMGMTELALQTDLTP----EQREYLDLARQSALSLLDIINDILDFSRIEAGR 382 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713 M L P SL + + L A + +R + A P ++ D + Q+ N++S Sbjct: 383 MELARAPFSLRRTLGSCLRLFDNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQVIANLVS 442 Query: 714 NAIHFTPSGG-QIIISTT----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 N + FT G ++ + T + V DTG+G+ + + F Q Sbjct: 443 NGLKFTRDGSVRVTVDTAPPLHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYFTQ 502 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 + GTGLGL +++ +V G+ ++ S P +G+ Sbjct: 503 LDAGLSREAGGTGLGLSISRNLVALMGGRIWVESEPNRGSTFFFT 547 Score = 42.7 bits (99), Expect = 0.28, Method: Composition-based stats. Identities = 28/354 (7%), Positives = 84/354 (23%), Gaps = 39/354 (11%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYG 145 + +DA G + E + + +G + G D + ++ + + Sbjct: 85 FTLDARGTVLEANLKGAAMLGRERDALPGNPFSDHILPSDRAAFAAYLARIRETGRAGTL 144 Query: 146 KTTLWPIEGTNLYVPIDLAALP---------------IYSRNREFSGFRGFGIVHVNRVD 190 + L +G V +L+A P + V + Sbjct: 145 QIRLLRPDG--ARVWAELSAEPKPPFDPLGAASLRMVATDMTEGVLARQDLATVLDSAPI 202 Query: 191 NDPRALG-----KRLDKKFSHLHEIKKGHS---------------SVEKEKYDIFSQQSP 230 + + L + + + + + + Sbjct: 203 PIVKVRVTGDGDRVLVYQNPAAARLFGDEALERSCKGFLCNKEVCPALAAESGVVRDREC 262 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 R ++ T + + + + K Q+ Sbjct: 263 AVKTRFGERIMYKTAHKLPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLA 322 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350 T+ + + + +L + + + + + L ++ Sbjct: 323 TMSHEIRTPMNGVMGMTELALQTDLTPEQREYLDLARQSALSLLDIINDILDFSRIEAGR 382 Query: 351 LTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 + ++ + G L D N ++ + + + + RL + Sbjct: 383 MELARAPFSLRRTLGSCLRLFDNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQV 436 >gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens DSM 2638] Length = 1006 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 171/395 (43%), Gaps = 38/395 (9%) Query: 445 RKMEIEV--MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + Q + D + I + +G+ + N + GY ++ L+K + Sbjct: 330 ENLRRTRGLEQYQFFFDNVDDLVCITDMDGLFIRVNSGGADFLGYGRDEFLKKTVFELVP 389 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + + + + + E + + E +R + D++ Sbjct: 390 PYERESLRGLMNSLFAGNNSLQFECPAVAKSGEIVYTDVRSRRITYHGQDVLLSVVRDVT 449 Query: 563 EWKQEKNKLSHA----------------------------KKIAEKESSHKSDFLARVSH 594 + K+++ +L H AE + KS+FLA++SH Sbjct: 450 DRKRDEEELQHYAAELLKAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSH 509 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+ +I+G ++++ + R Y + SG +L++++D+LD+SKIESGK Sbjct: 510 EIRTPMNSILGMADMLTDTRLTS----EQRNYVSIFRDSGKALLNLIDDILDLSKIESGK 565 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713 + L ++D+ V E ++ + A +K ++ P D +KQI +N+LS Sbjct: 566 LTLEHTKFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLS 625 Query: 714 NAIHFTPSGGQI-IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NAI FT SG + IS++ S + IL VRD+G+G++ + + + F Q +S + Sbjct: 626 NAIKFTDSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIFENFVQADSSTTRK 685 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 GTGLGL + + +V+ G + + + G Sbjct: 686 YGGTGLGLSITRNLVELMNGHIDVRNVSSGGAEFR 720 Score = 46.9 bits (110), Expect = 0.014, Method: Composition-based stats. Identities = 13/166 (7%), Positives = 44/166 (26%), Gaps = 9/166 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147 D G ++ +G + + + ++ + + L N+ + Sbjct: 355 TDMDGLFIRVNSGGADFLGYGRDEFLKKTVFELVPPYERESLRGLMNSLFAGNNSLQFEC 414 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 G +Y + + + ++ +V + + Sbjct: 415 PAVAKSGEIVYTDVRSRRITYHGQD------VLLSVVRDVTDRKRDEEELQHYAAELLKA 468 Query: 208 HEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKD 251 EI++ +S+ + + R K++ + + Sbjct: 469 KEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSHEIRTP 514 >gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon aurantiacus ATCC 23779] Length = 701 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 102/434 (23%), Positives = 192/434 (44%), Gaps = 40/434 (9%) Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KMEIEVMQLCSI 457 ++ E + + ++ + + + ++ MQL Sbjct: 281 PVRVEGEAWAVLVLSTNREPIFTTRDLYFIQALADVAARPLQRATSYSELLEARMQLQQT 340 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYLT 514 L + G+A+ + EG IL TN A +L+ E L P+ + LT Sbjct: 341 LASLPLGLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWDILPLLLKRLSHPLELT 400 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570 + + Q E + L E L L++ + + + + D++ ++ Sbjct: 401 DFFAECQAQPDETLELALRLSEPLQDLKLRSTPVKDAQHQITGRLVVIEDVTREREI--- 457 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 K++F++ VSHE+RTPLT+I+G++E++ + F P+ E+ + Sbjct: 458 -----------DKMKNEFVSVVSHELRTPLTSILGYTELLLAREFKPV---ERQEFVQTV 503 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 N + +V+DLL++S++++G++ L+ VSL + + E + +EK + Sbjct: 504 YDQANQLSKMVDDLLNLSRLDAGQIKLNRWVVSLHQIIREITKQLNETLSEKH-RLLIDI 562 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVIL 739 IP I AD V+QI N+LSNAI ++P+GGQ+ + + VI+ Sbjct: 563 PEGIPPIFADKDKVRQILTNLLSNAIKYSPNGGQVALIVRELRKVPPGAPPLPNERSVII 622 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRD G+G++ +L K F ++ NS + GTGLGL + KA+++ + G+ + ST Sbjct: 623 AVRDQGMGISEEDLPKLFTRFFRVDNSTTRKIGGTGLGLSITKALIELHGGRIWATSTLG 682 Query: 800 KGTLIEIIFPLYDT 813 +GT + P+ Sbjct: 683 RGTTFWVTLPIATE 696 >gi|73749292|ref|YP_308531.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] gi|73661008|emb|CAI83615.1| sensor histidine kinase/response regulator [Dehalococcoides sp. CBDB1] Length = 1092 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 115/745 (15%), Positives = 223/745 (29%), Gaps = 49/745 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147 +A + G + + IG + D++ I D LK + Sbjct: 231 NADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKEGISSQVVF 290 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +Y+ N + V + + +K + L Sbjct: 291 LNRNYTKDRRVIYCTWYNSALYASNGKLI--STMSQVEDSTEREQIKISLAENEKHYREL 348 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263 +E + + K +V E+ A +D + +PL Sbjct: 349 YEQSPAGYQSLDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFV 408 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGE 319 S + E + E + Sbjct: 409 KAG-STHVDFKMKRKDGQISIVTFEGRIAYTPKGEFKQTHCIIQDITERYMAEEATREHK 467 Query: 320 NLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + V+ G AN + L Y + ++++ + Sbjct: 468 ERYQALFNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPF--DITKRD 525 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ IK + R A I + K I Sbjct: 526 ENGEHPVIKAIESLRRTGK---VQAERIFIHKDHHEIPVEINARLFKYKGTDT---IITI 579 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + + ++ D IAI++ + I++ N A + G D++ Sbjct: 580 AHDITTRKQAEAALTHSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLV 639 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K + L ++ E + + + Sbjct: 640 GKYCYQVVHGMNQPHPMCPHARTLESRHVESSEY---YDKRLKLWVEASSSPIFNKKGEL 696 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609 + DIS+ K+E+ + + AE S + A ++HEI PLT +IGFSE+ Sbjct: 697 TGSVHIIKDISKRKEEELQQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSEL 756 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + P I+ +I+ +L ++ + V++ E ++ Sbjct: 757 LLEREDLP---DDIKANLKIINDGSQRAKEIIKRMLTFAR----QTTPQMSRVNITELIN 809 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQII 726 + L I I + +P ++AD ++Q+ LN++ NA + G + Sbjct: 810 HTLELRNYVLATANIKIVKDYDATLPWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILT 869 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I T V + V+D G GM +K +PF GEGTGLGL L+ ++ Sbjct: 870 IKTEKLD-GYVRISVKDDGPGMPEGIRKKLFQPFFTTKEP----GEGTGLGLSLSLGIIQ 924 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811 + G S KGT I P+ Sbjct: 925 EHTGTIRAESEEGKGTTFIIELPIA 949 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 41/398 (10%), Positives = 103/398 (25%), Gaps = 36/398 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D +G E+++ +G ++IG + +D + +K +T Sbjct: 359 LDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFVKAGSTHVDFK 418 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G V + Y+ EF + I+ + +++ L Sbjct: 419 MK-RKDGQISIVTFE--GRIAYTPKGEFK--QTHCIIQDITERYMAEEATREHKERYQAL 473 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265 V + K ++ + + D+ K ++ Sbjct: 474 FNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPFDITKRDENGEHPVI 533 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----------HRNHPSLSAYF 315 ++ + + K + + F+Y A Sbjct: 534 KAIESLRRTGKVQAERIFIHKDHHEIPVEINARLFKYKGTDTIITIAHDITTRKQAEAAL 593 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 T D + ++ N +F K D + Sbjct: 594 THSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLVGK-------YCYQV 646 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + N P+ + + +++ L + N+ E I Sbjct: 647 VHGMNQPHPMCPHARTLESRHVE---SSEYYDKRLKLWVEASSSPIFNKKGELTGSVHII 703 Query: 435 PEDVDTRINK---RKMEIEVM---QLCSILEATSDGIA 466 + + + +++ + +L ++ E + GIA Sbjct: 704 KDISKRKEEELQQQQLRNKAEMSSRLAAVGE-MAAGIA 740 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 61/186 (32%), Gaps = 14/186 (7%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDG 464 +T P + Q + +++RK+ +L + + Sbjct: 167 VLTIFPLAGLVVCLLFIDQESYYSTISELSLSERKLTTALDTIREGNEKLRLHTQNSPLA 226 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR 522 N + +I A +FG+ ++ + K + + ++ + + + Sbjct: 227 TIEWNADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKE-GIS 285 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIA 578 + + TK+ +++ L S+ ++ + D +E +Q K L+ +K Sbjct: 286 SQVVFLNRNYTKDRRVIYCTWYNSALYASNGKLISTMSQVEDSTEREQIKISLAENEKHY 345 Query: 579 EKESSH 584 + Sbjct: 346 RELYEQ 351 >gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510] gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510] Length = 448 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 115/428 (26%), Positives = 211/428 (49%), Gaps = 36/428 (8%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + E + + +++ + + + + ++ S+++ + I ++ +G +L N Sbjct: 17 PSVSDPAETIRRLEARIAELEANLRRSETRVGELRFRSLVQTAASIILVLGADGRVLEAN 76 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEK 537 + FG V + +P+T +E+ L + E+ + E+ Sbjct: 77 HEAERAFGLEVGQAVGRPWTEVMEERPNGAFATQLAMAAEGTEIRNFEQAVRDQQYRSER 136 Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDIS--------------------------------E 563 +L + + DI+ E Sbjct: 137 VLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVADRTRALMQEIQE 196 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 ++ + L AK+ AE + KS+FLA +SHE+RTPL AIIGFS +++++ GPLG+P+Y Sbjct: 197 RRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMESEIVGPLGHPKY 256 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 ++YA I +SG +L +++D+LD++KIE+GK+ +H +P+ + +AV ++ L+ A E Sbjct: 257 LDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSLLLIAERAKEGG 316 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + A + PR+L D VKQI LN+L+NA+ FTP+GG + + +++ V D Sbjct: 317 LTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLRVRPE-GGRILIEVAD 375 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 +G+GM+ + A++PFGQ+ + R GTGLGLPL ++ V+ G I S +GT Sbjct: 376 SGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLDIRSREGEGTT 435 Query: 804 IEIIFPLY 811 I + P+ Sbjct: 436 ISVRLPVA 443 Score = 44.6 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 6/182 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146 + A G + E + E + G + +G +V + + + T + Sbjct: 66 LGADGRVLEANHEAERAFGLEVGQAVGRPWTEV-MEERPNGAFATQLAMAAEGTEIRNFE 124 Query: 147 TTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + + + V + +L LP G I R + R L+ + + Sbjct: 125 QAVRDQQYRSERVLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVA 184 Query: 206 HLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + I +++ R K++ + + ++ Sbjct: 185 DRTRALMQEIQERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMME 244 Query: 264 SE 265 SE Sbjct: 245 SE 246 >gi|147669545|ref|YP_001214363.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1] gi|146270493|gb|ABQ17485.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1] Length = 1262 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 110/750 (14%), Positives = 242/750 (32%), Gaps = 55/750 (7%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW- 143 W D + S+ + G ++ + + P + + +L+K+ + Sbjct: 406 WEFDLANGVVHPSDGAREIYGLKEG-ILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYD 464 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 P +G LY+ ++ + R FG + L + + + Sbjct: 465 IEFKIKRPTDGAILYI----HSIAEFDSKRNVV----FGTIQDITKRKQAEELLRESEAR 516 Query: 204 FSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEK 258 F + KY +++ ++ +SL Sbjct: 517 FRSTFDQSPIGAAIYGLDLKYRQVNEKFCQMLGYSASEFTSLKVSDITNSDDFAKDIIHL 576 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 L E S + + + + + +++ + YL+ + ++ Sbjct: 577 NRLKNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLLYYLAMIVDITARKAAEDA 636 Query: 319 ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + G L AN + + Y + + K+ Sbjct: 637 LQKYKLIAEDSRDIILFMNKEGGQLLEANSAAVKAYGYSREQLL-----------SMKIQ 685 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + A + +L R L ++ + I + Sbjct: 686 NLRAPQARVLTARQRNQAYVRGMLFETFHQSKDGRVFPVEVSSRGADIEGTTTLINIIRD 745 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVED 491 + + + + + + + +D I + G + N A + GY ++ Sbjct: 746 TTERKQAENALNESLQNYQVLFNSVTDAILVHQPAADYSAGKFIEVNDAALAMLGYSRKE 805 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549 +L+ + + ++ + I ++ + TK K + + + + K Sbjct: 806 LLQITPMDLMSKGKYP-VSAFADNIRYIEKNTEVVSEYTMETKSGKTIPVELHSRMFKFG 864 Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607 DISE K+ + + + +E S + A ++HEI PLT +IGF+ Sbjct: 865 GKRTVITLARDISERKKMEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFA 924 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 ++ + P ++ I+ V++IV +L ++ + V++ E Sbjct: 925 SILMEREDLPAD---VMDELQIINSGSQRVVEIVKRMLTFAR----QAKPVRSSVNITEL 977 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQ 724 + + L I + + +P + D ++Q+ LN++ NA + G Sbjct: 978 IDNTLDLRSYVLKTANIEVVRHYEPELPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGI 1037 Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 + I E V + +D G+GM+ L K +PF + GEGTGLGL L+ + Sbjct: 1038 LTIRVKKE-GEWVRMSFQDNGLGMSTETLGKLFQPFFTTKDP----GEGTGLGLSLSHGI 1092 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + A+ G S +G I P+ + Sbjct: 1093 ILAHEGTIRGESILGEGAEFTIELPIKPSD 1122 Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats. Identities = 50/507 (9%), Positives = 137/507 (27%), Gaps = 31/507 (6%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D+ G E+++ +G ++IG + +D + K T + Sbjct: 154 LDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTADTEFY 213 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + +G+ V + + N F + + + + +K+ L Sbjct: 214 MNRKDGS--VVLMAFSGKIGCDANGNFK--QTHCALQDITQRHLADEAIRESQRKYQALF 269 Query: 209 EIKKGHSSV------EKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKY 259 E + V E + L ++ S + H L +++ Sbjct: 270 ESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSSGLLSKEI 329 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317 + + + + + + + + F LQ ++ ++ Sbjct: 330 TDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAHDITIRKKIARELEQ 389 Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + ++ + N + + + + ++ + + Sbjct: 390 SHRRLVKAEKVAGFGYWEFDLANGVVHPSDGAREIYG------LKEGILTIPFVQQIPVP 443 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 ++ L + I + L + I + + G + Sbjct: 444 EDRPAMDKALNNLIKQNIPYDIEFKIKRPTDGAILYIHSIAEFDSKRNV----VFGTIQD 499 Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + + + S + + G AI + N ++ GY + Sbjct: 500 ITKRKQAEELLRESEARFRSTFDQSPIGAAIYGLDLKYRQVNEKFCQMLGYSASEFTSLK 559 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553 + + + +L + E K + + + + + Sbjct: 560 VSDITNSDDFAKDIIHLNRL-KNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLL 618 Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579 Y + DI+ K ++ L K IAE Sbjct: 619 YYLAMIVDITARKAAEDALQKYKLIAE 645 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 45/514 (8%), Positives = 131/514 (25%), Gaps = 51/514 (9%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 +DA+ G + + + L +G +++G L ++ I + +L+ + + Sbjct: 29 LDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKDIASSRKAFAVLQEKEYIRYED 88 Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 G V + + L ++ ++++ Sbjct: 89 LPLKTKNGQIQQVEFVSNVYWVGDEK------IIQCNIRDITDRKRAEELLRKTEERYRE 142 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 ++ + + +V + D + + Sbjct: 143 FYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVF 202 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGE 319 + + + E + + G + ++ +F E + Sbjct: 203 KATGTADTEFYMNRKDGSVVLMAFSGKIGCDANGNFKQTHCALQDITQRHLADEAIRESQ 262 Query: 320 NLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDI----------EIA 363 + FV N + Y + + + Sbjct: 263 RKYQALFESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSS 322 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 G LS + + + L D I+ H ++ + Sbjct: 323 GLLSKEITDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAH------- 375 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + R++E +L + G + ++ + + Sbjct: 376 ------------DITIRKKIARELEQSHRRLVKAEKVAGFGYWEFDLANGVVHPSDGARE 423 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 ++G + M+ L ++ ++ +E + + +L + Sbjct: 424 IYGLKEGILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYDIEFK-IKRPTDGAILYIHS 482 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 I + + T+ DI++ KQ + L ++ Sbjct: 483 IAEFDSKRNVVFGTIQDITKRKQAEELLRESEAR 516 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 47/402 (11%), Positives = 112/402 (27%), Gaps = 25/402 (6%) Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKD 251 + + ++ L E + + + +P + L E KD Sbjct: 8 LEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKD 67 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHP 309 + + +L +E E T N + + + + Sbjct: 68 IASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEFVSNVYWVGDEKIIQCNIRDITDRK 127 Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E E K PI + + S G N +L YK + I G Sbjct: 128 RAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGE-- 185 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 P D + + + ++ + + M F + Sbjct: 186 -FLQPDQVDLFRKRFPVFKAT--GTADTEFYMNR---KDGSVVLMAFSGKIGCDANGNFK 239 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILSTNRAVSK 483 + + + + + ++ E+ + + + N Sbjct: 240 QTHCALQDITQRHLADEAIRESQRKYQALFESIGEAAFVCYINNREWADGFVELNAVACD 299 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + GY E++L+ + +++ +T+ L ++ + + K+ +S+ + Sbjct: 300 MLGYTHEELLKISARNLFFHPSSGLLSKEITD--ELYAQKMVTRECNLPHKDGHNISVEV 357 Query: 544 I--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 I L + HDI+ K+ +L + + K Sbjct: 358 TFHIFDLQGRPAVLILAHDITIRKKIARELEQSHRRLVKAEK 399 Score = 92.8 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 38/292 (13%) Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 + E + + G + ANP L + Y + + + Sbjct: 5 RLGLEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGI 64 Query: 370 LDAPKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 S + + L + + + W + + Sbjct: 65 FKDIASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEF-VSNVYWVGDEKIIQCN---- 119 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479 + D + + + + + + G ++ EG L N+ Sbjct: 120 --------------IRDITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQ 165 Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 GY E+++ F FL+ + + + + + K+ ++ Sbjct: 166 VWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTA---DTEFYMNRKDGSVV 222 Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + K ++ + DI++ + +++ + + Sbjct: 223 LMAFSGKIGCDANGNFKQTHCALQDITQRHLADEAIRESQRKYQALFESIGE 274 >gi|289433253|ref|YP_003463126.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] gi|288946973|gb|ADC74670.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT] Length = 1092 Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats. Identities = 115/745 (15%), Positives = 223/745 (29%), Gaps = 49/745 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147 +A + G + + IG + D++ I D LK + Sbjct: 231 NADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKEGISSQVVF 290 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +Y+ N + V + + +K + L Sbjct: 291 LNRNYTKDRRVIYCTWYNSALYASNGKLI--STMSQVEDSTEREQIKISLAENEKHYREL 348 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263 +E + + K +V E+ A +D + +PL Sbjct: 349 YEQSPAGYQSLDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFV 408 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGE 319 S + E + E + Sbjct: 409 KAG-STHVDFKMKRKDGQISIVTFEGRIAYTPKGEFKQTHCIIQDITERYMAEEATREHK 467 Query: 320 NLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373 + V+ G AN + L Y + ++++ + Sbjct: 468 ERYQALFNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPF--DITKRD 525 Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 + ++ IK + R A I + K I Sbjct: 526 ENGEHPVIKAIESLRRTGK---VQAERIFIHKDHHEIPVEINARLFKYKGTDT---IITI 579 Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493 + + + + + + ++ D IAI++ + I++ N A + G D++ Sbjct: 580 AHDITTRKQAEAALTHSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLV 639 Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552 K + L ++ E + + + Sbjct: 640 GKYCYQVVHGMNQPHPMCPHARTLESRHVESSEY---YDKRLKLWVEASSSPIFNKKGEL 696 Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609 + DIS+ K+E+ + + AE S + A ++HEI PLT +IGFSE+ Sbjct: 697 TGSVHIIKDISKRKEEELQQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSEL 756 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + P I+ +I+ +L ++ + V++ E ++ Sbjct: 757 LLEREDLP---DDIKANLKIINDGSQRAKEIIKRMLTFAR----QTTPQMSRVNITELIN 809 Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQII 726 + L I I + +P ++AD ++Q+ LN++ NA + G + Sbjct: 810 HTLELRNYVLATANIKIVKDYDATLPWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILT 869 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 I T V + V+D G GM +K +PF GEGTGLGL L+ ++ Sbjct: 870 IKTEKLD-GYVRISVKDDGPGMPEGIRKKLFQPFFTTKEP----GEGTGLGLSLSLGIIQ 924 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811 + G S KGT I P+ Sbjct: 925 EHTGTIRAESEEGKGTTFIIELPIA 949 Score = 80.1 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 41/398 (10%), Positives = 103/398 (25%), Gaps = 36/398 (9%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D +G E+++ +G ++IG + +D + +K +T Sbjct: 359 LDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFVKAGSTHVDFK 418 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G V + Y+ EF + I+ + +++ L Sbjct: 419 MK-RKDGQISIVTFE--GRIAYTPKGEFK--QTHCIIQDITERYMAEEATREHKERYQAL 473 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265 V + K ++ + + D+ K ++ Sbjct: 474 FNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPFDITKRDENGEHPVI 533 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----------HRNHPSLSAYF 315 ++ + + K + + F+Y A Sbjct: 534 KAIESLRRTGKVQAERIFIHKDHHEIPVEINARLFKYKGTDTIITIAHDITTRKQAEAAL 593 Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 T D + ++ N +F K D + Sbjct: 594 THSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLVGK-------YCYQV 646 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + N P+ + + +++ L + N+ E I Sbjct: 647 VHGMNQPHPMCPHARTLESRHVE---SSEYYDKRLKLWVEASSSPIFNKKGELTGSVHII 703 Query: 435 PEDVDTRINK---RKMEIEVM---QLCSILEATSDGIA 466 + + + +++ + +L ++ E + GIA Sbjct: 704 KDISKRKEEELQQQQLRNKAEMSSRLAAVGE-MAAGIA 740 Score = 50.8 bits (120), Expect = 0.001, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 61/186 (32%), Gaps = 14/186 (7%) Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDG 464 +T P + Q + +++RK+ +L + + Sbjct: 167 VLTIFPLAGLVVCLLFIDQESYYSTISELSLSERKLTTALDTIREGNEKLRLHTQNSPLA 226 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR 522 N + +I A +FG+ ++ + K + + ++ + + + Sbjct: 227 TIEWNADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKE-GIS 285 Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIA 578 + + TK+ +++ L S+ ++ + D +E +Q K L+ +K Sbjct: 286 SQVVFLNRNYTKDRRVIYCTWYNSALYASNGKLISTMSQVEDSTEREQIKISLAENEKHY 345 Query: 579 EKESSH 584 + Sbjct: 346 RELYEQ 351 >gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens AM1] gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens AM1] Length = 1125 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 125/732 (17%), Positives = 238/732 (32%), Gaps = 56/732 (7%) Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 L + P +G L + T +L + A + + N F+ R Sbjct: 114 APLILRPGVRLGSLCLADSQPRDFTPEDAAALRDLAEIVT-AQMRLRRDNLAFASERALR 172 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-- 240 +H + + + +R + + + LR+ Sbjct: 173 QIHESTIRAQGVEIERRASANSLLTMAEQIAQVGHWRLNFASGQPIYSESLLRIAGLDAA 232 Query: 241 ------SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 L + D + + F + + Sbjct: 233 APAARHPGLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTD 292 Query: 295 NSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348 + + + + A E D P+ + G Y N F Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 A + L ++ RL + Sbjct: 353 EDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQA--RDGS 404 Query: 409 -NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 M+ P A G + + + +E L LE G Sbjct: 405 YRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFD 464 Query: 468 INREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 N I + +L+G P + +T + + + + + R Sbjct: 465 WNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRF 524 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK----- 576 E ++ L Y DI+E K + L A Sbjct: 525 IAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAA 579 Query: 577 --IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R I SG Sbjct: 580 TVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRR---LELIRVSG 636 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++ Sbjct: 637 ESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDL 696 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------EEVILRVRDT 744 P ++ D ++Q+ N+L+NA+ FTP+G ++++ + + E + + DT Sbjct: 697 PASVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGGTAEALRFEISDT 755 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 756 GIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTF 815 Query: 805 EIIFPLYDTSHP 816 L + P Sbjct: 816 WFTLALPRATTP 827 >gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1125 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 125/732 (17%), Positives = 239/732 (32%), Gaps = 56/732 (7%) Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 L + P +G L + T +L + A + + N F+ R Sbjct: 114 APLILRPGVRLGSLCLADSQPRDFTPEDAAALRDLAEIVT-AQMRLRRDNLAFASERALR 172 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241 +H + + + +R + + + LR+ + Sbjct: 173 QIHESTIRAQGVEIERRASANSLLTMAEQIAQVGHWRLNFASGQPIYSESLLRIAGLDAA 232 Query: 242 -------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 L + D + + F + + Sbjct: 233 APTTRHPGLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTD 292 Query: 295 NSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348 + + + + A E D P+ + G Y N F Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 A + L ++ RL + Sbjct: 353 EDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQA--RDGS 404 Query: 409 -NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467 M+ P A G + + + +E L LE G Sbjct: 405 YRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFD 464 Query: 468 INREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523 N I + +L+G P + +T + + + + + R Sbjct: 465 WNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRF 524 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK----- 576 E ++ L Y DI+E K + L A Sbjct: 525 IAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAA 579 Query: 577 --IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634 AE+ S+ KS+FLA +SHEIRTPL I+G+++++ ++R + R I SG Sbjct: 580 TVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRR---LELIRVSG 636 Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694 +L +VND+LD+SKIE+G++ L P +L + + + +++++ A + + + ++ Sbjct: 637 ESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDL 696 Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------EEVILRVRDT 744 P ++ D ++Q+ N+L+NA+ FTP+G ++++ + + E + + DT Sbjct: 697 PASVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGGTAEALRFEISDT 755 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ + + KPF Q+ S R G+GLGL + +V G + S G+ Sbjct: 756 GIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTF 815 Query: 805 EIIFPLYDTSHP 816 L + P Sbjct: 816 WFTLALPRATTP 827 >gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein [Sinorhizobium meliloti 1021] Length = 772 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 117/658 (17%), Positives = 241/658 (36%), Gaps = 51/658 (7%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248 D + + + G + + I + + + V + Sbjct: 126 EILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGT 185 Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 L+ ++ + + + + G + Y Sbjct: 186 EHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKR 245 Query: 309 PS-LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366 A F E + + + + + + S + + + G Sbjct: 246 TRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDA 305 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + L+ + + + + I ++ ++ + + + Sbjct: 306 ARLMHVEDRGIYRVARAI--AKGNERQID---QVFRMRHADGHYVWLRARAQVIRTVSGR 360 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 GI + + ++ +L +E TS+ + ++ ++ N + + Sbjct: 361 -THLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQ 419 Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 P ++ + + + ++ R + + +E+ L + Sbjct: 420 LPDHVLVPGTERTIVH---AAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRT 476 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------------- 573 + DI+ K+ + +L Sbjct: 477 R---DGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANY 533 Query: 574 --AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 K+ AE + KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ +Y EY+ I Sbjct: 534 QAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIF 593 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 SG +L+++ND+LD+SKIE+G M + E + L + E + + A K I + + Sbjct: 594 ESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQIS 653 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 + + + AD R++KQ+ LN+LSNA+ FT GG+I + V L + D+G+G+ Sbjct: 654 SGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIADSGIGIPKG 711 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L+K +PF Q+ + G+GLGL +++++ + G I S GT+I + P Sbjct: 712 ALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 769 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 36/398 (9%), Positives = 100/398 (25%), Gaps = 21/398 (5%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 D + E + + + ++ ++ E + + + Sbjct: 2 ADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAF 61 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 L+ + ++ + + ++ E Sbjct: 62 LLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTE 121 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 L E +D V G +F + L L + + + Sbjct: 122 FLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRAS 181 Query: 380 AIKP---VMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKA--NQFPENMPQ 430 + L + + A A + W E SL +T A Sbjct: 182 IDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYI 241 Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 D D + + +E + L G+ + + L +R++ ++ G + Sbjct: 242 QAKRTRDADAVFAESNLRVE-----TALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGD 296 Query: 491 D--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + + + + ++ + ++++ + + LR + + Sbjct: 297 ASVLSFGDAARLMHVEDRGIYR--VARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVI 354 Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583 S D++E + + + A + Sbjct: 355 RTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIE 392 Score = 45.4 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 30/378 (7%), Positives = 87/378 (23%), Gaps = 15/378 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143 W+ D S + + +G + + D + ++H++ + + + N Sbjct: 271 LWDFDLDNRRLFWSRSMYEMLGMQGDASV-LSFGDAARLMHVEDRGIYRVARAIAKGNER 329 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 YV + A I + + GI + D++ Sbjct: 330 QIDQVFRMRHADGHYVWLRARAQVIRTVSGR---THLIGIAMDVTEQHRLAQRYAEADQR 386 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + E + + + + ++ + V Sbjct: 387 LADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERR 446 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 ++ + ++ + ++ S + L Sbjct: 447 IADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 506 Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 D L AN ++ + + + L+ + + N + Sbjct: 507 ATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAIL 566 Query: 382 KPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 + + + ++ + I E Sbjct: 567 GFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHM-----RITR 621 Query: 440 TRINKRKMEIEVMQLCSI 457 RI+ + E ++ +I Sbjct: 622 ERIDLAPLIEETLRFTTI 639 >gi|27364012|ref|NP_759540.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus CMCP6] gi|27360129|gb|AAO09067.1| Aerobic respiration control sensor protein arcB [Vibrio vulnificus CMCP6] Length = 780 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 175/391 (44%), Gaps = 19/391 (4%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 +E E + ++ L S ++A+ D I N EG+ NRA+ +L G Sbjct: 135 DLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQ 194 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + + ++ + + T E+ + LR + Sbjct: 195 LVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPFYSKDG 254 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DI+E K+ + L EK S K+ F++ +SHE+RTPL I+G S + Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + R +Y I+ S + +I ND++D+ K + K+ L P++ ++ V+ Sbjct: 308 LLDTRL----TDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVA 363 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727 E S+ L A +K + + +P+ I D ++Q+ N++SNA+ FT GG + + Sbjct: 364 EIESISALMAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTV 423 Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785 S+ + +I+ V DTG+G+ EL+K + Q+ + + GTG+GL +++ ++ Sbjct: 424 SSEVEEDFATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483 Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814 + G + S G+ I P+ +++ Sbjct: 484 NMMDGDITVSSEEGFGSTFTISIHVPVIESA 514 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 24/240 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + Sbjct: 172 NAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----------------AHKDD 252 I R+ ++ + K D Sbjct: 288 STISHELRT--PLNGIVGLSRMLLDTRLTDEQRKYMQTINVSAITLGNIFNDIIDMDKFD 345 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 K E P + E + E E + Q + L + ++ E + R + Sbjct: 346 RRKLELLPAPLNFEDFVAEIESISALMAEQKGLRFDLERL-SELPKAIEVDATRLRQVIW 404 >gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 959 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 107/561 (19%), Positives = 207/561 (36%), Gaps = 40/561 (7%) Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 H +++ ++ L + K S S+ + + + DK Sbjct: 267 LHMVSMTGTLAERTLSKLYEDIKNSLNSNSNAPLRDDQQLEAQELSDIRKAFDKL----- 321 Query: 335 VYSHGNLFYANPSFLLLT---------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 ++ + +N F + ++ + + D +K +M Sbjct: 322 IWDLTEVSLSNEQFSNVLESMGDMLVVVDQNQEVLLSNKRFDDFCDDQYGEKQGILKFIM 381 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 + + + ++ + + A+ + ++ + R Sbjct: 382 --QKLGATQSNELKHFSVST--GQERFVRWTKTSLADANGNIRGDIFVGSDETEQRS--- 434 Query: 446 KMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 +E V L ++ + I I + + + I+ N A +L GY E+I+ Sbjct: 435 -LESHVKVLTHAMDEATVSIIISDIKRVGQPIIYANSAFEELTGYTREEIIGHNCRSMQG 493 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFS-SCYSLTMH 559 + T + + ++ +E L K+ L + K + Y Sbjct: 494 EETKEKTIDCIRKAIATREP--IETTLLNYKKDGTKFFNRLNLTPVKTNGEITHYIGFQQ 551 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 D+++ +Q + L A++ AE+ + KS FLA +SHEIRTP+ I G +++ G Sbjct: 552 DVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLL----GGSEL 607 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 Y + S +L IVND+LD SKIE+G++ + P + E++ S + Sbjct: 608 TGEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAILC 667 Query: 680 NEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEE 736 EK + + F + D +QI N+L NA+ FT +G I ++T + Sbjct: 668 QEKGLELHFHFDLQGYHVVQGDDVRFRQILSNLLGNAVKFTDTG-YIEVTTCIEKNPDNT 726 Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L V+DTG+G+ + F Q S + GTGLGL ++K + G + Sbjct: 727 LRLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCGLMGGDIKL 786 Query: 795 FSTPAKGTLIEIIFPLYDTSH 815 S G+ L + Sbjct: 787 ESVKGNGSTFSFTIQLEEADE 807 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 14/132 (10%), Positives = 36/132 (27%), Gaps = 6/132 (4%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153 + + + G ++IG + + + I + + + + Sbjct: 465 IIYANSAFEELTGYTREEIIGHNCRSMQGEETKEKTIDCIRKAIATREPIETTLLNYKKD 524 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 GT + L P+ + N E + + GF + +K +K Sbjct: 525 GTKFFNR--LNLTPVKT-NGEITHYIGFQ--QDVTQQRQTEQYLQEAREKAEESARLKSS 579 Query: 214 HSSVEKEKYDIF 225 + + Sbjct: 580 FLASMSHEIRTP 591 >gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase [Exiguobacterium sibiricum 255-15] Length = 714 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 122/682 (17%), Positives = 244/682 (35%), Gaps = 57/682 (8%) Query: 146 KTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + TL+PI V P L P+ + + + + D L D + Sbjct: 60 EDTLFPISSRIQVVSLPYTLTISPVEQTDFFLVTIKSLDLHQLLNSTIDAAILVTDPDFR 119 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + ++E V+ Q P + L + + + ++ +L Sbjct: 120 ITAINETAGTMFGVDPAAL----PQEMTPISIHDPEEFQLRKQHLEQLNLKNLSDEDILL 175 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 +H + + + + Y LQN + + + + E Sbjct: 176 LHGRDTENDWTYHRTDGSYFYGRLYMTRLQN-GGFFLFITDISSQKQVELHLAKSERRFR 234 Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + + +G + AN + ++ + ++ ++ L + Sbjct: 235 LIAESVLEAVIFHDNGVILDANRAAEIIFR-TRLELMKGHQILDFI-------QPEFQNS 286 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 V + S+ + P E + + + + + Sbjct: 287 VTQRIMKHHEEPYEVIG---RRADGTSVEIEVFPREITYEKTRMR--VDVVRDMTEQKKI 341 Query: 444 KRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDIL 493 ++ +E E + SIL+A+++G + +G N KL G I Sbjct: 342 EKMLEREKNAIMRQRDITQSILQASNEGFLLTGEDGSFTYMNVKARKLLDVPGIAPSKIQ 401 Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPF 550 + L+ T M + E+L+ + + TL K Sbjct: 402 ERISMIPNLDLATRYAMLQQVEELLAGKHSEISFRFTLQQPDESGHHYFEFYATSIKKER 461 Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 S + D +E ++ K + ++ VSHE+RTPL++I+GF Sbjct: 462 SRFSRHGFLFVFRDRTEEQKM--------------DHVKDELISTVSHELRTPLSSILGF 507 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 E+++ ++ P + Y + + +++ND LDI ++E GK + F+P SL + Sbjct: 508 MELLRYRQPTP---EKTTRYVEIVHEEAKRLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQ 564 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + E I A I ++ I AD VKQ+ +N+LSNAI ++P+ I Sbjct: 565 LLEETIETFGETAETH--TIHAVTDDDPILIFADEDKVKQVIINLLSNAIKYSPAADHID 622 Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786 + T++ + IL V D G+G+ +K F ++ NS + GTGLGL + K +++ Sbjct: 623 VRLEKTAD-QAILSVTDYGIGIPPTAFDKLFTKFYRVDNSAVRKIGGTGLGLAICKEIIE 681 Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808 ++ G + S +G+ I+ Sbjct: 682 SHGGAISVESELNQGSTFTIVL 703 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 32/380 (8%), Positives = 95/380 (25%), Gaps = 38/380 (10%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKM----------------IGMRLCDVSDILHIDPNNH 132 D + I+E G + + + + ++ ++ + Sbjct: 114 TDPDFRITAINETAGTMFGVDPAALPQEMTPISIHDPEEFQLRKQHLEQLNLKNLSDEDI 173 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + LL ++T T +G+ Y + + +N F F + Sbjct: 174 L--LLHGRDTENDWTYH-RTDGSYFYGRLYM----TRLQNGGF-----FLFITDISSQKQ 221 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK------NKVSSLTEY 246 + +++F + E + + ++ R + +++ + Sbjct: 222 VELHLAKSERRFRLIAESVLEAVIFHDNGVILDANRAAEIIFRTRLELMKGHQILDFIQP 281 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--S 304 + K+ E I + ++ + Sbjct: 282 EFQNSVTQRIMKHHEEPYEVIGRRADGTSVEIEVFPREITYEKTRMRVDVVRDMTEQKKI 341 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIA 363 + ++T + F + G+ Y N L + +I Sbjct: 342 EKMLEREKNAIMRQRDITQSILQASNEGFLLTGEDGSFTYMNVKARKLLDVPGIAPSKIQ 401 Query: 364 GGLSTLLDAPKLSDNNAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 +S + + + ++ V L + I+ L + + +K Sbjct: 402 ERISMIPNLDLATRYAMLQQVEELLAGKHSEISFRFTLQQPDESGHHYFEFYATSIKKER 461 Query: 423 QFPENMPQNGIEPEDVDTRI 442 + + + + Sbjct: 462 SRFSRHGFLFVFRDRTEEQK 481 >gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001] Length = 1390 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 112/648 (17%), Positives = 215/648 (33%), Gaps = 58/648 (8%) Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271 + ++ + + D+ + + + ++ + DV + LL +E+ Sbjct: 390 RAARALLRHESDL---EKSADGFDLLPSWTVYDAEFSRELDVSEYPISVLLRTEKPFSNM 446 Query: 272 QEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + N + ++++ + + ++ + E Sbjct: 447 RVGMIVENGERRVYDALGEAIRDDSTGEFLAGVVTFRDVTKMTEEITEIRERDEERFKLI 506 Query: 326 VDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384 D P + + N + T + + + P D+ Sbjct: 507 CDTMPQLVWTTRADGYHDFFNTRWYTYTGLTPEESLGLG------WKHPFHPDDMPETTK 560 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 S +T E + + + E G + + K Sbjct: 561 RWRHSLKTGDPYVTEYRCRSKTGEWRWMLGRALPLRNKETGEIEKWFGTCTDVNEGIEAK 620 Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILST--------N------RAVSKLFGYPVE 490 QL S+L + I +N + N S G + Sbjct: 621 LAARSTRQQLLSVLAHSQVTIFTVNTNLELTMLEGALIWDSNGEDSTPPHSSWFMGQNMY 680 Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL------RII 544 + + P + + + E G + L + I Sbjct: 681 EAFNRLNPQLKTGEHPKFLRPVEDILAGGKTEEVAEHGMDGRWYRTRFLPILGKKTKEGI 740 Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES----------SHKSDFLARVSH 594 + D+SE K++ L + ++ KS FLA +SH Sbjct: 741 STNETCIEGVIGVIMDVSELKEKAEGLKEESREKKQAMANEAAAKEANRLKSQFLANMSH 800 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 EIRTP+T +IG +E++++ + EY I RS N +L ++ND+LD SK+ESG+ Sbjct: 801 EIRTPITGVIGMAELLRDMEL----DAEQTEYVENIQRSANALLTVINDILDFSKVESGR 856 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNI 711 +++ SL V++ ++ A K + R+ + + ++ D V+QI N+ Sbjct: 857 LDIEEVQFSLSVIVTDVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDPGRVRQIITNL 916 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 L+N+I FT G + S V V D+G+G+ +K +PF Q S Sbjct: 917 LTNSIKFTNQG-YVKFSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQPFSQGDAST 975 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 + GTGLGL + K +++ G + ST GT+ P Sbjct: 976 ARKFGGTGLGLTICKNLLELMNGNMTLESTLGNGTVATFWVPFSKPQQ 1023 Score = 88.5 bits (218), Expect = 5e-15, Method: Composition-based stats. Identities = 58/534 (10%), Positives = 134/534 (25%), Gaps = 47/534 (8%) Query: 94 YLKEISEELPKTIGNYAFK----------MIGMRLCDVSDILHIDPN----------NHI 133 + +E + + +G + G L V + + + + Sbjct: 117 TVVLANEAMGRMLGMTDDALDDNSHVGERLRGQSLSQVGIDMIQEGRPVWVGWEAFLDSL 176 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + + T L+ P + P + +V V + Sbjct: 177 VVEMGARQTSKDAADLFDQGYGGEATPTPHSLAPPLLDTQPSPSTVKDAVVDVVISRKEL 236 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253 G + V + + ++ SSL Sbjct: 237 GKPGYDSRNRSGASAHQVYAKMIVTIWEIEDHQVYFTLTFTSSQSPPSSLVSGRKAVAKP 296 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 E+ T S+ P H + + +L ++ S H S + Sbjct: 297 AILEQADRKTISNSNPPSVSSSHDSSSPSFRISPSAVSLSSSPFPPMGPPSTAAHASTPS 356 Query: 314 YFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + + +D +P + G++ + N + L +++S D+E + LL + Sbjct: 357 ILQKMILMRDALLDNTTMPILAMWKDGSVTFPNRAARALLRHES--DLEKSADGFDLLPS 414 Query: 373 PKLSDNNAIKPV-----MLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + D + + + RT + R+ I N E + + + E Sbjct: 415 WTVYDAEFSRELDVSEYPISVLLRTEKPFSNMRVGMIVENGERRVYDALGEAIRDDSTGE 474 Query: 427 NMPQNGIEPEDVDTRINKRKMEIE-VMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 + + ++ + I + + +G N Sbjct: 475 FLAGVVTFRDVTKMTEEITEIRERDEERFKLICDTMPQLVWTTRADGYHDFFNTRWYTYT 534 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G E+ L + + L +K + + Sbjct: 535 GLTPEESLGLGWKHPFHPDDMPETTKRWRHSLKTGDPYV--TEYRCRSKTGEWRWMLGRA 592 Query: 546 KKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 L + T D++E + S + L+ ++H Sbjct: 593 LPLRNKETGEIEKWFGTCTDVNE----------GIEAKLAARSTRQQLLSVLAH 636 Score = 56.6 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 38/145 (26%), Gaps = 7/145 (4%) Query: 70 SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-ID 128 E F + W A GY + G + +G+ + Sbjct: 499 DEERFKLICDTMP-QLVWTTRADGYHDFFNTRWYTYTGLTPEESLGLGWKHPFHPDDMPE 557 Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187 LK + + T T + + ALP+ + E + FG Sbjct: 558 TTKRWRHSLKTGDPY--VTEYRCRSKTGEWRWMLGRALPLRNKETGEIE--KWFGTCTDV 613 Query: 188 RVDNDPRALGKRLDKKFSHLHEIKK 212 + + + ++ + + Sbjct: 614 NEGIEAKLAARSTRQQLLSVLAHSQ 638 >gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 7425] Length = 469 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 179/396 (45%), Gaps = 11/396 (2%) Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + ++ ++ + ++ +E E + + E DG + + G + N A + L Sbjct: 53 VAEEELKQQNEELMAARQSVEQERQRYQELFEFAPDGYVVTDIHGTVREANCAAAALLNL 112 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + ++ KP F+ L ++ + + E +++ + + Sbjct: 113 APQYLVGKPLINFVADEQRREFRSMLLQL--QRVHRLQEWEVRLCPRQKAAFEAALTVAA 170 Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKK---IAEKESSHKSDFLARVSHEIRTPL 600 + S+ M DI+ KQ ++ L + + + K+ F+ +SHE+RTP+ Sbjct: 171 VRNHYGQSIALRWLMRDITARKQAESHLHQVQLQNLELIESNRLKNQFMGIISHELRTPM 230 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 AI+GFS+++ RF P+ I + I + +L ++ ++L S++++ ++ L E Sbjct: 231 NAILGFSDLLLR-RFHDRYEPQQIAFLERILNNAKHLLLMIEEILAYSRLKAHRLELQLE 289 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 L E +Q A++K + + + + D V+QI +N+LSNAI FT Sbjct: 290 AFDLLELARITAEEMQCMADQKALALELDLPPSPLVVCNDRTRVRQILVNLLSNAIKFTD 349 Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 +G ++ ++ E++++ V+DTG+G+ + + F Q+ SQ GTGLGL + Sbjct: 350 TG-RVTLAIAPGKAEKLLITVQDTGIGIDPAHQGRIFQEFWQVNQSQTRSQGGTGLGLSI 408 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 ++V GK ++ S +G + I P S P Sbjct: 409 TSSLVTLMQGKIWVESELGEGAVFRIELPRNVPSPP 444 >gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 773 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 102/541 (18%), Positives = 207/541 (38%), Gaps = 31/541 (5%) Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343 + + + +S S + + ++D ++ + Sbjct: 94 FPVEVRSRYSGEQSKGNVVSIIRDISHIDKIAKDAEMFSVSLDILDDAIVTFTKDLKVSL 153 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403 + + Y + + +L + + + + + + RLH Sbjct: 154 WSKAAEEKLGYTKEEIVGQNI---KILVPNEKIKEFENEIFEVRKGNVVERLETIRLH-- 208 Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463 N++ ++ + + G+ + + ++++ + LE Sbjct: 209 --KNGNAIDVSISVSPFYDPDGVLIGVLGVYKDISQRKELAKQLKRNEERWRYALEGGRF 266 Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 GI + E + + ++ GY ++ + + + + L + S Sbjct: 267 GIWDWDIENNKIFSADLWKEILGYNEGELNDTYEDWMSKVHPEDFPYVKDKLNK-HSRGE 325 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA---- 574 + E K L + I + T+ DI++ K + +L Sbjct: 326 KYIDEFRMKCKDNTYKYLRAKGQIIEWREDGNPLRMMGTLEDITDRKIIEEELKEKYKQL 385 Query: 575 ---KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 K+ AE + KS FLA +SHEIRTP+ I G +++++ G +Y N + Sbjct: 386 ELLKEEAENANKAKSQFLANMSHEIRTPMNGIFGVVQLLESTDVGA----EQNKYINMLK 441 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 S + + I+ND+LDISKIESG L+ EP +L E +S + + N K + + Sbjct: 442 ESTHTLAGIINDILDISKIESGTFKLNNEPFNLTEMISSIYHGLLVDGNAKGLEVGYYLD 501 Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGV 746 NI P+++ D +KQI N++SNA+ +T G + E++ V+D+G+ Sbjct: 502 PNINPQVIGDELKLKQILTNLISNAVKYTEQGF-VSFRVNRISFDEHTEKIQFNVKDSGI 560 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + EK + F Q +S + + +GTGLGL ++K + G S +G++ Sbjct: 561 GIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLAISKNLALLMQGDISFESKLGEGSIFTF 620 Query: 807 I 807 Sbjct: 621 T 621 Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 6/137 (4%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 ++LE D I I+++ G I+ N+ + +GY E+++ Q+ + L Sbjct: 13 YKNVLEDLMDIILIVDKNGKIVYGNKRAVETYGYTYEELVNLSVFDLRNQDIEEPVQEQL 72 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKL 571 + L +E T K + + + + DIS + Sbjct: 73 KQALLRG----IEFKTYHYKKNGTKFPVEVRSRYSGEQSKGNVVSIIRDISHIDKIAKDA 128 Query: 572 SHAKKIAEKESSHKSDF 588 + F Sbjct: 129 EMFSVSLDILDDAIVTF 145 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 38/379 (10%), Positives = 107/379 (28%), Gaps = 27/379 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 +D +G + ++ +T G +++ + + D+ + +P + L R + KT Sbjct: 27 VDKNGKIVYGNKRAVETYGYTYEELVNLSVFDLRNQDIEEPVQEQLKQALLRGIEF--KT 84 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSH 206 + GT V + +SG + G +V + R + + K + Sbjct: 85 YHYKKNGTKFPVEVR----------SRYSGEQSKGNVVSIIRDISHIDKIAKDAEMFSVS 134 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 L + + K+ ++ L K ++ ++ +K + + Sbjct: 135 LDILDDAIVTFTKDLKVSLWSKAAEEKLGYTKEEIVGQNIKILVPNEKIKEFENEIFEVR 194 Query: 266 ESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 + ++ E+ + + N N + L S + Sbjct: 195 KGNVVERLETIRLHKNGNAIDVSISVSPFYDPDGVLIGVLGVYKDISQRKELAKQLKRNE 254 Query: 324 E----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 E ++ + + N ++ + + Y + + K+ Sbjct: 255 ERWRYALEGGRFGIWDWDIENNKIFSADLWKEILGYNEGELNDTYEDW-----MSKVHPE 309 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + + + + + G + Sbjct: 310 DFPYVKDKLNKHSRGEKYIDEFRMKCKDNTYKYLRAKGQIIEWREDGNPLRMMGTLEDIT 369 Query: 439 DTRINKRKMEIEVMQLCSI 457 D +I + +++ + QL + Sbjct: 370 DRKIIEEELKEKYKQLELL 388 >gi|328472027|gb|EGF42904.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus 10329] Length = 783 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 174/406 (42%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ S + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 516 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E E+ K + Q + Q + + + +A G Sbjct: 117 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 175 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + + G +++G+ DV P + + + L Sbjct: 176 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 235 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G +L +P YS++ G GFG ++ + + Sbjct: 236 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 291 Query: 213 GHSSV 217 Sbjct: 292 HELRT 296 >gi|320157394|ref|YP_004189773.1| aerobic respiration control sensor protein arcB [Vibrio vulnificus MO6-24/O] gi|319932706|gb|ADV87570.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus MO6-24/O] Length = 780 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 175/391 (44%), Gaps = 19/391 (4%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 +E E + ++ L S ++A+ D I N EG+ NRA+ +L G Sbjct: 135 DLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQ 194 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 ++ + + ++ + + T E+ + LR + Sbjct: 195 LVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPFYSKDG 254 Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 DI+E K+ + L EK S K+ F++ +SHE+RTPL I+G S + Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669 + + R +Y I+ S + +I ND++D+ K + K+ L P++ ++ V+ Sbjct: 308 LLDTRL----TDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVA 363 Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727 E S+ L A +K + + +P+ I D ++Q+ N++SNA+ FT GG + + Sbjct: 364 EIESISALMAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTV 423 Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785 S+ + +I+ V DTG+G+ EL+K + Q+ + + GTG+GL +++ ++ Sbjct: 424 SSEVEEDFATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483 Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814 + G + S G+ I P+ +++ Sbjct: 484 NMMDGDITVSSEEGFGSTFTISIHVPVIESA 514 Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + Sbjct: 172 NAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 1437 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 97/525 (18%), Positives = 193/525 (36%), Gaps = 30/525 (5%) Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + ++ P P N +F + + Sbjct: 551 QRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGRTPQ 610 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 L S + I S+ T I S + + Sbjct: 611 ELGLYSVSNTSPLSDINQRAAQTSESTR-----EELIIDTPDGQSRNVLYWIEPFHLPDG 665 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-----EGIILSTNRA 480 + + + R + + E +L + E+ + +G I Sbjct: 666 QPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVAGK 725 Query: 481 VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 + G +D+L + + ++ M + ++S L++ + + + Sbjct: 726 AYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV--LVSAQQLTPLDQQFRHVSADGVV 783 Query: 539 LSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 L + ++ + D++ +++ + L AK AE K FLA +SHE Sbjct: 784 RWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESALHAKDRFLAMMSHE 843 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 IRTP+ ++G E+++ + + + + SG +L I++D+LD +K+E+G++ Sbjct: 844 IRTPMNGVLGLVELLQQTKL----EGEQKQMVSLVQDSGRALLHILDDILDYAKVEAGRL 899 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714 ++ L E + L+ A+EK + + A +P + D ++QI N+LSN Sbjct: 900 DISPSATDLREVFDGTVGLLASRAHEKALAMHVDVAAEVPASVSVDGIRLRQILFNLLSN 959 Query: 715 AIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 AI FT +G + +S T + + V DTG+G++ PF Q S R Sbjct: 960 AIKFTDAGS-VRLSAKCTDVTDDTAHLAISVSDTGIGISPEVQATLFAPFVQAERSTTRR 1018 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813 GTGLGL +++ + G+ + S P GT + + P+ + Sbjct: 1019 YGGTGLGLAISRQLAGLMGGELVMESAPGHGTAVTLRLAMPVLEA 1063 Score = 68.1 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 39/406 (9%), Positives = 108/406 (26%), Gaps = 25/406 (6%) Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259 L F V+ E+ + L Sbjct: 311 LLGIFPEYQNFLSRTLGVQFERVAVRDWADALDKAANGEVDILLGMSDQDARPAGFALTQ 370 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 P+ + + + L++ + K + + + + D Sbjct: 371 PIDATPLVIVGRNDALTVAALSELSGKTVALPASDTLTAILRHNVPKIRLVSAGSVDNAL 430 Query: 320 NLTPE-----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 ++ T+ P+ + + + P L +T + + G + Sbjct: 431 SMVASGKADFTIVNLPVADAL-----IRHHFPGELKVTGSANTIESIGVGVSARY----- 480 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENM 428 + I + + ++ + ++ + S + A + Sbjct: 481 AALVPLINRALFAMPEGEQVSIRNKWLSVSYQLGPSASAVLGKFGPVAALVLAALVALFI 540 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 Q + E+ R + + ++ +++EA + + ++ N A +FG P Sbjct: 541 KQMQLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQP 600 Query: 489 VEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 +L + + S ++ E I + + + I Sbjct: 601 RASLLGRTPQELGLYSVSNTSPLSDINQRAAQTSESTREELIIDTPDGQSRNVLYWIEPF 660 Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 LP ++ DISE ++ + + ++ + + + Sbjct: 661 HLPDGQPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVY 706 Score = 55.4 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 28/301 (9%), Positives = 80/301 (26%), Gaps = 21/301 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHI-GDLLKRQNTWYGK 146 DA ++ G ++G ++ + + P + I + + + Sbjct: 581 DAAQRYVAVNAAFCNMFGQPRASLLGRTPQELGLYSVSNTSPLSDINQRAAQTSESTREE 640 Query: 147 TTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKK 203 + +G + V I+ LP + + + + + + + Sbjct: 641 LIIDTPDGQSRNVLYWIEPFHLPDGQPAGTVASLVDISEIREAQARAERLEQRLREVTES 700 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYP 260 L + + + + ++ + E H+DD + Sbjct: 701 LPALVYQFELPPGQVQGRITYVAGKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV 760 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 L+++++ + +Q+ H + + + + + + Sbjct: 761 LVSAQQLTPLDQQFRHVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALE 820 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + +A FL + ++ + GL LL KL Sbjct: 821 AAKNAAESA------------LHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKLEGEQK 868 Query: 381 I 381 Sbjct: 869 Q 869 >gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 835 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 178/387 (45%), Gaps = 19/387 (4%) Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVED 491 + D + N ++ + + IL + SDG+ + + +G L N A ++FG + Sbjct: 218 QAETDLQQNNLTLQEQTNLMQLILNSMSDGVIVSDDKGKFLIVNPAAEQMFGGITESQQS 277 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST---KEEKLLSLRIIIKKL 548 + + +F + + +L Q E +++ K Sbjct: 278 EWSEQYGLFQADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEGIWITVSGTPLKD 337 Query: 549 PFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + DI+E K + K+ AK+ AE + KS+FLA ++HE+RTPL I+G+ Sbjct: 338 ASGTLKGGVVVCRDITERKSAELKILQAKEAAEVANHAKSEFLANMNHELRTPLNGILGY 397 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 +++++ P + + + I + G+ +L ++ND+LD+SK+E KM+L+ + Sbjct: 398 AQILQRD---PATTSKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQKMDLYPQDFHFAN 454 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QI 725 ++ + + ++ A +K I R AN + AD + ++Q+ LN+LSNAI FT G + Sbjct: 455 FLTTTVEICRIKAEQKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSNAIKFTDFGSVKF 514 Query: 726 II------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 + T T + + V DTG+G+ + + PF Q + EGTGLGL Sbjct: 515 TVEAISNEETADTRSTRIRFLVEDTGIGIPTEKWQTIFLPFEQAGK-RDRNSEGTGLGLA 573 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI 806 +++ +V + STP KG+ Sbjct: 574 ISQQIVQMMGSSIQVNSTPGKGSKFWF 600 Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats. Identities = 11/142 (7%), Positives = 28/142 (19%), Gaps = 9/142 (6%) Query: 90 DAHGYLKEISEELPKTIG----NYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTW 143 D G ++ + G + + L + L R Sbjct: 252 DDKGKFLIVNPAAEQMFGGITESQQSEWSEQYGLFQADRVTLFPTQEIPLVRTL-RGEQV 310 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + I ++ P+ + G G + + + Sbjct: 311 QNVEMFTRHSKAPEGIWITVSGTPLKDASGTLKG--GVVVCRDITERKSAELKILQAKEA 368 Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 369 AEVANHAKSEFLANMNHELRTP 390 >gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88] Length = 571 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 85/363 (23%), Positives = 171/363 (47%), Gaps = 31/363 (8%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 + +L +IL++ +G+ ++++ I+ N ++F +DI+ + ++ Sbjct: 234 EKQNKLEAILKSMDNGVIAVDKDFKIIMINPYAKEIFSIE-QDIIGENLLDKIKSYE--- 289 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567 L EI D + + + +EK L ++ K+ + D++E K+ Sbjct: 290 ----LKEIFKEDNIEDY-REVKILSPKEKNLRVKTTDIKIGKQLIGTVAVVQDVTEIKKL 344 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + + +S F+A V+HE++TPLT+I GF+E +K ++ Sbjct: 345 E--------------NIRSQFVANVTHELKTPLTSIRGFAETLK----YVEDRETKDKFL 386 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 N I+ + + ++ND+L +S IE+ ++ E +S++E + + + L++ A +K I + Sbjct: 387 NIINDESDRLTRLINDILALSHIENSN-SMKLENISINEMLEDIVYLMENSAKDKNIEL- 444 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 + + I D KQ+ +N++ N I +T GG++ I N + + V DTGVG Sbjct: 445 FIVGDKMQPIKGDRDRFKQMMINLVDNGIKYTEEGGKVYIGAKKEDNNCI-VWVEDTGVG 503 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 ++ +E+ + F ++ ++ GTGLGL + K +V G I S KG+ I Sbjct: 504 ISKEHVERLFERFYRVDKARSRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIR 563 Query: 808 FPL 810 P+ Sbjct: 564 IPI 566 >gi|28897261|ref|NP_796866.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus RIMD 2210633] gi|260876228|ref|ZP_05888583.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AN-5034] gi|28805470|dbj|BAC58750.1| sensor histidine kinase FexB [Vibrio parahaemolyticus RIMD 2210633] gi|308092976|gb|EFO42671.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AN-5034] Length = 783 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ S + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 516 Score = 48.5 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E E+ K + Q + Q + + + +A G Sbjct: 117 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 175 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + + G +++G+ DV P + + + L Sbjct: 176 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 235 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G +L +P YS++ G GFG ++ + + Sbjct: 236 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 291 Query: 213 GHSSV 217 Sbjct: 292 HELRT 296 >gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6] gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6] Length = 830 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 129/678 (19%), Positives = 245/678 (36%), Gaps = 49/678 (7%) Query: 176 SGFRGFGIVHVNRVDNDPRALGK--RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233 +G + +V ++ P A + ++K + +F S Sbjct: 14 AGMLSWALVRKRTLETVPIARTLLIEQMHDAVLVADVKGRILDANPQACQLFQPPSTSII 73 Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE----ESSLPEQEDFHTINLN-QYTKKQY 288 + + D+ + L S E+ + D H L + Sbjct: 74 GKPVATIIPALVPLLAVTDLSGRTEIRLDQSPPIILEADITALHDGHDSPLGWLIVLRDI 133 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----------FVYSH 338 + + + + + L + + + Sbjct: 134 TLPARQSRYQQVLSDCSQLLLRENQPTINSSTLIDRVLGMLRRAAGVTRIDICQNMLDEN 193 Query: 339 GNLFYANPSFLLLTKYKSVDD-----------IEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 G L + T + + L+ P A + Sbjct: 194 GELAAHTVAEEHHTDVPAFPLEYCIPWSQIPHLRDKLIAGQLVCGPVGQLFAAFPATVQK 253 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-----PQNGIEPEDVDTRI 442 L + N + + + + + Sbjct: 254 LQTGGVEDLL--LLPLYGNDGWWGILRASSSRSDQVWDAPLIKFLCSAADMIAAAIRQWE 311 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVEDILRKPFTVF 500 R ++ + + +AT D I + + + ++ TN + + G P+ I+ + Sbjct: 312 TLRTIQEREHFIQRVTQATPDLIYVYDLQTDQVIYTN--MEQGPGGMPLTAIIGRTSDAD 369 Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCY----S 555 L + YLT+I++ Q + L L R + + Y Sbjct: 370 LSARELATRQAYLTQIINAADMQVCSLEYRLQQADGSNLWLLRRDTVFVRDAQGYPTQIL 429 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D++E L AK+ AE + KS FL+ +SHE+RTPLTAIIG+S+ + Q Sbjct: 430 GIVQDVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSHELRTPLTAIIGYSQ-LLGQLM 488 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 ++I SG +L ++ND++++S+I+SG+ NL PV++ + V+EA+S+V Sbjct: 489 TVGDYEGVKSDLHHIYTSGKHLLALINDVIELSRIDSGQRNLDMRPVNIVDLVTEAVSMV 548 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 + R ++ +IP ++ D V+QI LN+L+NA FT G+I +T + Sbjct: 549 RPLVTRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNNAAKFT-ENGEITFTTIYDPQG 607 Query: 736 EV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 EV I ++ DTG+G+ ++ + PF Q+ + R EGTGLGL L + + + G+ Sbjct: 608 EVPTLIFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRYEGTGLGLALCRRLCEVLGGEI 667 Query: 793 YIFSTPAKGTLIEIIFPL 810 + ST G++ + PL Sbjct: 668 SVQSTLGVGSIFTVRLPL 685 >gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus metalliredigens QYMF] Length = 586 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 170/369 (46%), Gaps = 26/369 (7%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ + +++ S+L +DG+ ++ IL N +L + ++ P ++ N Sbjct: 238 SAIKDQNIKMDSMLTGMTDGVIALDLNKKILLINHESRELLNVEQDVVIGSPMDKAIQNN 297 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560 M + E+ + ++++ ++ + K + L + D Sbjct: 298 ---EMYEMIENTFIHKKS--YEEEMKLMDENKRIVKVKSSLMKNKNDNDDVIGVFLLIQD 352 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ++E ++ + + KS+F A VSHE+RTPLT I GF E +++ + L Sbjct: 353 VTEIRKLE--------------ALKSEFAANVSHELRTPLTLISGFVETLQS--WESLDE 396 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 N I+ + ++ND+L +S+IE+ + +E + ++ ++E ++ A Sbjct: 397 KDRKMALNIIELETERLKRLINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAA 456 Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 +K I ++T N+ + + KQ+ +N++ NAI +TP+GGQI +S E+ + Sbjct: 457 KKNIQLKTHIEKNVHTLFGNSDWFKQMLVNLIENAIKYTPTGGQIKVS-AKNEQNEISIM 515 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V D G+G+ + E+ + F ++ ++ GTGLGL + K +V G + S + Sbjct: 516 VMDNGIGIPKEDCERIFERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQ 575 Query: 801 GTLIEIIFP 809 G+ ++ P Sbjct: 576 GSHFKVRLP 584 >gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae DSM 2912] Length = 590 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 163/399 (40%), Gaps = 32/399 (8%) Query: 420 KANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + + GI + + + + + E QL +IL + +DG+ + G +L Sbjct: 213 VRVVTGDEVGRLGITLNKLAHDLEENIKALSKEKEQLANILASLADGVVSADLTGKVLLA 272 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N + +P L V + + ++ +G + Sbjct: 273 NPPARRWLRALSMAEEGQPSENRLPSQLFEVEQKVIETKEAQ------QREVVGQ---GR 323 Query: 538 LLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594 +++ + P S + DI+E + + DF+A VSH Sbjct: 324 TMAITMAPLYEPGSQALRGVVAVLRDITEQLNIE--------------RMRRDFVANVSH 369 Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654 E+RTPL+ + G+SE + + + E A I + +VNDLLD++++ESG+ Sbjct: 370 ELRTPLSMLQGYSEALVDDFID--DPEQRRELAEIILEETLRMRRLVNDLLDLAQLESGR 427 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713 + +PV + + + A E+++ + P I+ AD+ ++Q+ N++ Sbjct: 428 FVMKRQPVDVRPLIQKIWRKFSALAQERKLTFHLEMQVDDPVIVDADVDRLEQVLTNLID 487 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA T G + I + + + + V D G G+ ++ + F ++ ++ G Sbjct: 488 NAFRHTQPPGSVTIRFSVSQD-TARIAVEDQGAGIPPEDIPYIWERFYKVDKARTRNRGG 546 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 TGLGL +A+ +V + G + S KGT ++ PL Sbjct: 547 TGLGLAIARNIVLQHDGDITVESRLGKGTTFTVLLPLCQ 585 >gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335] gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners AB-1] gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335] gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d] gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b] gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d] gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a] gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B] Length = 612 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ E I ++ + E +L ++L +DG+ +R G I N Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ +P T L + + +++S + + Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +I + F S +HDI+E ++ +N+ + F++ VSHE+RTPLT Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++ + E + + G N ++ I ++ ++NDLL++S+++ G + + E Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447 Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717 V+L++ +S ++ + + IR F + + D + Q+ NI++NAI Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 ++P GG I I +++ VIL V D G+G+ +L + F ++ ++ + GTGLG Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L ++K +V+A+ GK + S+ G+ I P Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6] Length = 770 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 97/503 (19%), Positives = 187/503 (37%), Gaps = 29/503 (5%) Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 + P G + Y N + + L D L + Sbjct: 128 QLDAVLQALPEGVIATDAQGCITYVNAAAIALAGGALDDA-TGRPVRDVLHVFDRDDRRV 186 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 P+ + ++ LH + S+ + + + + Sbjct: 187 QPTPLERALAGAHALSDRHWLHGA--DGSPSVPIVEAASPIVDAHGNLDGAVLLLRD--- 241 Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +R + ++++A+ D I I+REG I+S N A ++FGY D +P Sbjct: 242 -AGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLET 300 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM- 558 + + L + L ++ + + + + + + Sbjct: 301 LVAMRWLR--RNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVHGGARSCVALS 358 Query: 559 -----------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607 D+ ++ A+ A+ + K + LA VSHE+RTPL I G+ Sbjct: 359 LTLRETGAQRRRDL-RTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWI 417 Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667 EV++N R L + + IDRS + +V D+LD S + +GK+ + PV + Sbjct: 418 EVLRNTRDDALE----QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRL 473 Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 S+ + Q A+ I++ A + + D ++Q+ N++SNA+ FTP GG + + Sbjct: 474 FSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTV 533 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + + + +L V DTG G+ + F + +S G GLGL + + + Sbjct: 534 TLS-RDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGL 592 Query: 788 NMGKFYIFST-PAKGTLIEIIFP 809 + G+ + S +G + P Sbjct: 593 HGGQVRVESEGRNRGATFTVTLP 615 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 35/377 (9%), Positives = 85/377 (22%), Gaps = 20/377 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWY 144 DA G + ++ G G + DV + D + L + Sbjct: 143 TDAQGCITYVNAAAIALAGGALDDATGRPVRDVLHVFDRDDRRVQPTPLERALAGAHALS 202 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRL 200 + L +G+ VPI AA PI + G R G + + Sbjct: 203 DRHWLHGADGSPS-VPIVEAASPIVDAHGNLDGAVLLLRDAGTERALAEVSRLQRAVVDA 261 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + + S IF R + ++ + Sbjct: 262 SPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNPLADSFDAMRE 321 Query: 261 LLTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 + E ++ + TL+ + L + + Sbjct: 322 AVGPLELLCVRRDGRRFRATVSAGPVHGGARSCVALSLTLRETGAQRRRDLRTQRSLQGA 381 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLL 370 + + + D+ + + ++ + + D +E + Sbjct: 382 RDARDRADTSNRLKDEL-LATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSA 440 Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430 + + + L + + + + +F Sbjct: 441 RSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASA 500 Query: 431 NGIEPEDVDTRINKRKM 447 + + R + Sbjct: 501 CVVSGDAERLRQMLANL 517 >gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus oremlandii OhILAs] Length = 587 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 171/372 (45%), Gaps = 27/372 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ + ++L + + I I+ I+ N++ KLF +D L + +E+N Sbjct: 239 QLSDSNTKFKALLTSMVNPIIAIDTNRHIILFNQSAEKLFKIDAKDALGRDVIQIIEENY 298 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561 +++ + + +K+LS+ L M D+ Sbjct: 299 LD------RQLIKVFTTEEANFEISIKRPAKKILSINANPIHLEHDPTRIMGIVAIMEDV 352 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E ++ + +SDF+ VSHE++TPLT+I GF E +K+ Sbjct: 353 TEIRRLE--------------KMRSDFVTNVSHELKTPLTSINGFVETLKSGAV--EDRD 396 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + I+ + + ++ND+L +S+IES + + + + E + + A+ Sbjct: 397 VAMRFLDIIEIETDRLKRLINDILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADS 456 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 K I + T + +P I + KQI +N+L N+I +TP GG++ + T +T + ++L V Sbjct: 457 KEIELFTDIDSALPSIYGNRDWFKQIVINLLDNSIKYTPIGGKVEL-TAYTKDNNIVLHV 515 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 +DTG+G+ +L + + F ++ ++ + GTGLGL + K +V + GK + S G Sbjct: 516 KDTGIGIPKKDLPRLFERFYRVDKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNG 575 Query: 802 TLIEIIFPLYDT 813 T + P+ + Sbjct: 576 TEFIVTIPITSS 587 >gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides ATCC 15264] Length = 663 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 106/513 (20%), Positives = 204/513 (39%), Gaps = 23/513 (4%) Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + + + ++ ++ + +P L ++ L + Sbjct: 13 PDSQAIALAALESSGAGWWRVRDTQTAWWSPRMFDLFGMPQTAEVPTIEALYRMYHPDDA 72 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 S + + + R + + +T+ + A+ E G+ Sbjct: 73 SLAARSFMALFA----SEAPVTLRYRVVHPSGAVRHHLTWGRRQPADANGEVWL-IGMVM 127 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + D + E E + TSD + + + A + GY ++L + Sbjct: 128 DVTDHVDDAVMFEAERA-FRFVAGHTSDMVVRHQVGVGLTYVSPAAKTVLGYSPREMLGR 186 Query: 496 PFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553 F+ + + I + T G K+ + L + + + Sbjct: 187 APGDFVAPGDLQRVRGIVHGRIARRETVSTEGYEYRGIHKDGHEVWLEANPRLVINGAGE 246 Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 + DI+ + + +L A+ +AE S KS+FLA +SHE+RTPLT+I+GFS +I Sbjct: 247 LSEVVDVVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLTSILGFSRLI 306 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 + Y + I +G +L +VND+LD SK+E+G + L EP S+ Sbjct: 307 GAGGDLSASD---RGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEPFSVAALGEG 363 Query: 671 AISLVQLYANEKRILIRTSF----ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QI 725 A +L++ A K +++ R++ D+ ++Q+ LN+L NA+ FT G ++ Sbjct: 364 ATALLREQAEAKGLVLSCEILGAGPAGDARLVGDVTRLRQVLLNLLGNAVKFTERGNVRL 423 Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 +S + L V DTG G+ ++E+ + F Q S R GTGLGL +++ Sbjct: 424 SLSVEPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGTGLGLAISRR 483 Query: 784 MVDANMGKFYIFSTPAKGTLIEII--FPLYDTS 814 ++D G+ S + G+ P+ +T+ Sbjct: 484 LMDVMGGEIGARSDGSTGSTFWFRTVLPVAETA 516 Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 36/391 (9%), Positives = 84/391 (21%), Gaps = 40/391 (10%) Query: 95 LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWP-- 151 L +S +G +M+G D + I + R+ T + + Sbjct: 165 LTYVSPAAKTVLGYSPREMLGRAPGDFVAPGDLQRVRGIVHGRIARRETVSTEGYEYRGI 224 Query: 152 -IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210 +G V ++ + + E S +V +A + + Sbjct: 225 HKDGH--EVWLEANPRLVINGAGELSEV--VDVVRDITARRAAQAELQSARLLAEAASQA 280 Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270 K + + + + D + + L + Sbjct: 281 KSEFLANMSHELRTPLTSILGFSRLIGAGGDLSASDRGYLDLIRSAGETLLTVVNDILDF 340 Query: 271 EQEDFHTINLNQYTKK-----QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + + + L+ + L E+ + D Sbjct: 341 SKLEAGALALSPEPFSVAALGEGATALLREQAEAKGLVLSCEILGAGPAGDARLVGDVTR 400 Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 + + + GN + + LS + M Sbjct: 401 LRQ----VLLNLLGNAVKFTERGNVRLSLSVEPAQDGTATLSASVTDTGPGLAAGQIEQM 456 Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 R + + S + L + E ++ Sbjct: 457 FERFTQADGSVS------RRFGGTGLGLAISRRLMDVMGGEIGARSDGSTGSTF------ 504 Query: 446 KMEIEVMQLCSIL---EATSDGIAIINREGI 473 ++L E D A + +G Sbjct: 505 -------WFRTVLPVAETAPDA-AGRDSDGQ 527 >gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100] Length = 529 Score = 328 bits (841), Expect = 3e-87, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 172/378 (45%), Gaps = 25/378 (6%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HY 512 ++L + + + + +G IL N L Y +++I + ++FL + + Sbjct: 6 YEALLNS--NAVIEFDNQGYILWANPNFLNLMEYELDEIEGRHHSIFLPEFHQHELEYQE 63 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568 + L+ Q E L TK+ + + ++ + DI+E K Sbjct: 64 MWNQLAEGHAQAGEFKRL--TKKNREVWIQGSYTPVRNLQGEISKIVKMAVDITEKKSLA 121 Query: 569 NKLSHAKKIA-------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 + L K + + K+ FLA +SHEIRTPL +IIG ++ + + Sbjct: 122 DNLEKKNKELLGAATKAKAATDAKTVFLANMSHEIRTPLNSIIGITDTLAETPL----DN 177 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + + R+ + ++ I+ND+LD+SK+E+G+M L P +L + E +++ A E Sbjct: 178 QQASFVEILQRANHQLMTIINDILDLSKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKE 237 Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEV 737 K + + + ++ + D ++Q+ +N+L+N++ FT + G+I + + + Sbjct: 238 KGLKLSLAIDPDVEEYFVGDADRLRQVLMNLLNNSLKFT-NNGEISLQVSVNRTVHKGNL 296 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + V DTG+G++ + + +PF Q + + GTGLGL + K +V G + S Sbjct: 297 LFCVTDTGIGISKQKFKDIFQPFTQADTTTTRKYGGTGLGLSITKNIVQMMNGHIWFESQ 356 Query: 798 PAKGTLIEIIFPLYDTSH 815 P +GT + T+ Sbjct: 357 PGQGTSFFFTISVPSTTE 374 Score = 42.3 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 30/264 (11%), Positives = 64/264 (24%), Gaps = 27/264 (10%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKT 147 D GY+ + + ++ G H + + L + G+ Sbjct: 19 DNQGYILWANPNFLNLMEYELDEIEGRHHSIFLPEFHQHELEYQEMWNQLAEGHAQAGEF 78 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + V I + P+ + E S IV + + ++L L+KK L Sbjct: 79 KRLTKKNR--EVWIQGSYTPVRNLQGEIS-----KIVKMAVDITEKKSLADNLEKKNKEL 131 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263 + K + S + + + D + +L Sbjct: 132 LGAATKAKAATDAKTVFLANMSHEIRTPLNSIIGITDTLAETPLDNQQASFVEILQRANH 191 Query: 264 ---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + + + + + L + + + + LS D Sbjct: 192 QLMTIINDILDLSKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVE 251 Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344 FV L Sbjct: 252 EY-----------FVGDADRLRQV 264 >gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1] gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D] Length = 612 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 178/394 (45%), Gaps = 33/394 (8%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ E I ++ + E +L ++L +DG+ +R G I N Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289 Query: 482 SKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 ++ +P T L ++ T + E++ T +++ L + Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVTIQDLMSTQQELIVTANANTHDELILHAD------ 343 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 +I + F S +HDI+E ++ +N+ + F++ VSHE+RTP Sbjct: 344 -FSLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTP 388 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 LT++ + E + + G N ++ I ++ ++NDLL++S+++ G + + Sbjct: 389 LTSLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMD 445 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNA 715 E V+L++ +S ++ + + IR F + + D + Q+ NI++NA Sbjct: 446 LEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNA 505 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I ++P GG I I +++ VIL V D G+G+ +L + F ++ ++ + GTG Sbjct: 506 IKYSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTG 564 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL ++K +V+A+ GK + S+ G+ I P Sbjct: 565 LGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301] Length = 873 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 116/640 (18%), Positives = 231/640 (36%), Gaps = 48/640 (7%) Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 + + + + R+ +V + + + L Sbjct: 87 TTDADARVTLLNPLAEKLTGWTLAEAAGRLIGEVFPIINKETRLPATIPVMET-LAEGTI 145 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LT 322 L + ++ +++ + + + S + L Sbjct: 146 QGLANHTVLIARDGSECDIADSCAPIRDREGQVVGAVLVFRNVSEEYAVQQALRDNTALI 205 Query: 323 PETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 ++ S+G + NP+ + + + GL+ + P+L Sbjct: 206 QTILNTVADGIITLHASNGTIETVNPTAQKMFGFSGAEL----AGLNFSVLIPELDQEQR 261 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 + Y A I W ++N I + Sbjct: 262 NSSLKHYSPSDEARAVGLGREVIGWRKDNK-PFPLEIAVSEMWLGGERYFTCILRDISAR 320 Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTV 499 R+ + +I + + + +G+I N ++ GY ++++ K Sbjct: 321 RLAEEAALNAGALQSAIFNSENFSSIATDAKGVIQIFNVGAERMLGYTADEVMNKITPAE 380 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIK 546 + L+ L+ + E K+ + + Sbjct: 381 ISDPEEVIARAKTLSIELATAITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVT 440 Query: 547 KLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI--------------AEKESSHKSDF 588 L + Y L D + KQ + + + + AEK + KSDF Sbjct: 441 ALRDAQSAIIGYLLIGTDNTARKQIEAERTTLHEALQLKNVELERATFVAEKANLAKSDF 500 Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648 L+ +SHE+RTPL AI+GF+++I + P + + I ++G +L+++N++LD++ Sbjct: 501 LSSMSHELRTPLGAILGFAQLI--ESGTPAPTASQKKSIDQILKAGWYLLELINEVLDLA 558 Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708 IESGK+ L EPV L + + E ++++ A + I + + D VKQI Sbjct: 559 LIESGKLALSLEPVLLADVMHECEAMIEPQAQSREINVIFKQPEVPYCVRGDRTRVKQIV 618 Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768 +N+LSNAI + G + + + T ++ V + V+DTG G+T+ EL + +PF ++ Q Sbjct: 619 INLLSNAIKYNRVNGTVTVECSITPHDTVRISVQDTGAGLTDEELTQLFQPFNRL--GQN 676 Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + EGTG+GL + K + D GK + S +G+ I Sbjct: 677 TKEEGTGIGLVVCKRLTDLMKGKIGVESIVGEGSTFWIEL 716 Score = 79.7 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 40/405 (9%), Positives = 96/405 (23%), Gaps = 36/405 (8%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNT-- 142 DA + ++ K G + G + +V I++ + + + L Sbjct: 88 TDADARVTLLNPLAEKLTGWTLAEAAGRLIGEVFPIINKETRLPATIPVMETLAEGTIQG 147 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 T L +G+ I + PI R + G + + + + Sbjct: 148 LANHTVLIARDGS--ECDIADSCAPIRDREGQVVGA--VLVFRNVSEEYAVQQALRDNTA 203 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + +P + L ++ Sbjct: 204 LIQTILNTVADGIITLHASNGTIETVNPTAQKMFGFSGAELAGLNFSVLIPELDQEQRNS 263 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 + + S ++ + ++ S +L + + L Sbjct: 264 SLKHYSPSDEARAVGLGREVIGWRKDNKPFPLEIAVSEMWLGGERYFTCILRDISARRLA 323 Query: 323 PET---VDKCPIPFF---------VYSHGNLFYANPSFLLLTKYKSVDDI---------- 360 E F + G + N + Y + + + Sbjct: 324 EEAALNAGALQSAIFNSENFSSIATDAKGVIQIFNVGAERMLGYTADEVMNKITPAEISD 383 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 + +L+ L I L I+ + A+ Sbjct: 384 PEEVIARAKTLSIELATAITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAV-VSVTAL 442 Query: 421 ANQFPENMPQNGIEPEDVDTRI--NKRKMEIEVMQLCSI-LEATS 462 + + I ++ + +R E +QL ++ LE + Sbjct: 443 RDAQSAIIGYLLIGTDNTARKQIEAERTTLHEALQLKNVELERAT 487 Score = 71.2 bits (173), Expect = 7e-10, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 7/143 (4%) Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 R ++ +L L + D + + + + N KL G+ + + + Sbjct: 59 QLRQLNATLQDSEEKLTVTLNSIGDAVITTDADARVTLLNPLAEKLTGWTLAEAAGRLIG 118 Query: 499 VFLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 + E L+ Q L T+ ++ + + Sbjct: 119 EVFPIINKETRLPATIPVMETLAEGTIQGLANHTVLIARDGSECDIADSCAPIRDREGQV 178 Query: 556 L----TMHDISEWKQEKNKLSHA 574 + ++SE + L Sbjct: 179 VGAVLVFRNVSEEYAVQQALRDN 201 >gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 1319 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 172/391 (43%), Gaps = 42/391 (10%) Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504 ++ V L +I++ DG+ +I+ G I NRA++++F + + Sbjct: 951 ETLQNTVADLNAIVDNLGDGLIVIDIYGQITRYNRALTEMFNLK-DSPQGQHLLEVFPP- 1008 Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMH 559 + L + + D ++ + + + + II+ + + Sbjct: 1009 ----VLATLLKPIEPDQQKVVTVEVELAQGKIGQALISKIIQGSYGQGTQKCIGAVILIR 1064 Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN------- 612 D++ ++ + K+DFLA VSHE+RTPLT+++GF+ +I + Sbjct: 1065 DVTAEREIE--------------QIKNDFLATVSHELRTPLTSVLGFAALILDKLNRVIF 1110 Query: 613 ------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 + + I + ++ND+LDI+KIESGK+ +FE VS Sbjct: 1111 PWVAIGDQPTQKAIQQVRNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPII 1170 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 + AI +K + + F+ ++P I D + Q+ +N+LSNA+ FT G Sbjct: 1171 ILERAIISTSSLFEDKNLRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS--- 1227 Query: 727 ISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 ++ N E +++ + DTG+G+ + E K F Q+ N + +G GLGL + + ++ Sbjct: 1228 VTCQAQQNQEYLVIAITDTGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQII 1287 Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 + + G+ ++ S +G+ PL + P Sbjct: 1288 EHHGGQIWVESQLGQGSTFFFTLPLAVSLPP 1318 >gi|325188817|emb|CCA23345.1| hybrid signal transduction histidine kinase putative [Albugo laibachii Nc14] Length = 1524 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 130/737 (17%), Positives = 256/737 (34%), Gaps = 56/737 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143 + +D +G + + + + +++G +L D D LK Sbjct: 93 IFGVDVNGCVNIWNRKAVEITQYSTEEVLGEKLVDTFIPDDYRAAVAEVFSDALKGDEGA 152 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + L G +V I L A + ++ GI RL Sbjct: 153 NFEVPLITKTGR--HVNILLNATARFDQHGGIV--GVVGIGQDITERIAQEQEYTRLIDT 208 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 + + V P M + +KD V L Sbjct: 209 ANAPIFGVDNNGCVNIWNKKAAEITQYTPSDVMGENLVEKFITDDYKDAVRSVLAKALDG 268 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323 E ++ + + N + + + ++ Sbjct: 269 IETANFEFPLITKM--GRRVEILLNATSRFNEHGKVMGMVGIGQDITDRIAQEQE---YS 323 Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 +D P F + N +T Y + + L +P+ A Sbjct: 324 RLIDTANAPIFGVDANMCVNIWNKKAAQITSYSIAEVMGEN--LVETFISPEYRPIVAD- 380 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 +L ++ + A+ I + + + + GI + D Sbjct: 381 --VLSKALKGIQTANFEFPLITRPGTRIEIL-LNATPRMDSNGTIVGVVGIGQDITDR-- 435 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FL 501 + E +++ + I ++ G I N+ + ++ GY +L F+ Sbjct: 436 ----IAQEHEYFR-LIDTANAPIFGVDTIGNINEWNQKIEEITGYSKATVLGLSLVNTFI 490 Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557 + + L + L E +TK+ L L + Sbjct: 491 IPESRQQVRQLLNQALIG--VDVGEMELPMTTKQGLFLLLLVNASSKKDMHGNIRGAIGV 548 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 D + KQ + + K +FLA SHE+RTPL +++G E++K ++ Sbjct: 549 GQDYTARKQME--------------AAKVNFLASFSHELRTPLNSVLGMLELLKEKKNLD 594 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 + R++ A SG+L+L+++ND+LD+SKIE+G M + P + + + +I + + Sbjct: 595 KNSERHVHMA---YVSGSLLLNLINDILDLSKIEAGHMEITAAPFHMHDLLDYSIEIFKF 651 Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN- 734 A E+ I++ ++P ++ D+ ++QI LN+LSNAI FT G + + + Sbjct: 652 KARERNIILEQKCGKDVPKMVIGDVVRLRQILLNLLSNAIKFTSEGSITVTCNVVLEPSL 711 Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 ++++ +V DTGVGM E + F ++ ++Q G+GLGL + K +V G Sbjct: 712 PPQFKKLLFQVIDTGVGMDAEERSRLFSLFTKLERTRQNNPTGSGLGLAICKQLVQLMDG 771 Query: 791 KFYIFSTPAKGTLIEII 807 + + S +G+ Sbjct: 772 EIDVDSELNQGSNFYFT 788 >gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus aggregans DSM 9485] Length = 880 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 119/654 (18%), Positives = 236/654 (36%), Gaps = 60/654 (9%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G G++ + L R + + + + + Y + R+ + Sbjct: 261 GEGVIGAVTLQERHNPLDLRFMQDLAQSIASQAAIALQNADLYHTIRTLNAELEQRVIER 320 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 L E L + S + L + + + S Sbjct: 321 THELEEEKDRLA-TLHAIASEVNRSLDLDLILNNSLEMLAHIVQAEHASILLTEEESPSL 379 Query: 300 FEYLSHRNHPSLSAYFDEGE--NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357 + + V + ++ + Sbjct: 380 LATRAILGRKVTPDNTVRFAIGQGIAGWAAQHGQTVLVND----VQQDDRWVTIPGSNRK 435 Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417 + +++ P + + L S + + Sbjct: 436 RE-------GSMIAVPLFVQGEVLGVMTLSHSRPNFFH-----------EGHVRLLNACA 477 Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 A I E + + E Q+ +IL++ DG+ + + G ILS Sbjct: 478 GTIAIGINNAKLYRMIIDESNRRSELLERQQRETSQITAILQSLLDGVLVCDIHGSILSV 537 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEE 536 N+A ++ P+E++L ++ + L E+ L T +T Sbjct: 538 NQAAGRILHRPIEELLLWNMHDLIQHCLSTHAADLPLEELFRRPLTTDGTPRTFSTTTTI 597 Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 ++ + + + + L + DI+ + K++F+ + Sbjct: 598 GNATINVSLSPVLNENDRTLGALLVLRDITR--------------EVEADRMKNEFIGTM 643 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE+RTP+TAI GF++++ G L N E+ N I + +++++ND+L+I+KIES Sbjct: 644 SHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTIYNNTERMINLINDVLEITKIES 702 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G + L + + L EA+S I+ +Q + ++++ + S +P I AD + QI ++L Sbjct: 703 GSIELEWRSLHLAEALSGVIAELQSHISQRQHQLTISIPPGLPLIRADAMRLHQILYHVL 762 Query: 713 SNAIHFTPSGGQIII---------------STTHTSNEEVILRVRDTGVGMTNYELEKAM 757 NA+ +TP+GG+I I S HT++ ++L + DTGVG+ +L + Sbjct: 763 LNAVKYTPAGGKITIAAREILNVDFPEPVRSILHTNHRYLLLSISDTGVGIRPEDLPRIF 822 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 F + N ++ GTGLGL + K +V G ++ ST +G+ I P+ Sbjct: 823 DRFFRAENPLKVEAGGTGLGLSIVKPLVQLLGGHIWVESTVGQGSTFYIALPVA 876 >gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str. Walvis Bay] Length = 1202 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 124/777 (15%), Positives = 241/777 (31%), Gaps = 80/777 (10%) Query: 88 NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 D + + G A IG L + ID T KT Sbjct: 297 RFDQDLRCTYANPAIESAFGQPARFYIGRSLPEA----GIDDAG-----FAGLETILHKT 347 Query: 148 TLWPIEGTNLYVPIDLAAL--------PIYSRNREFSGFRGFGIVHVNRVDNDPRALGK- 198 +E T +V + P S N + V + A + Sbjct: 348 LSEGVEKTAEFVRQTESGRQVFHCRCMPERSSNGQIDSV--LVSCRDITVLREQEARYQS 405 Query: 199 --RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 ++ V ++ DI + + + Sbjct: 406 VFEQAAVGLARAKLDNRLLQVNQKLCDILGYSRDELLNLRYEDL-----THPDDLERELP 460 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESFEYLSHRNHPSLS 312 LL + +S ++ + + + + + Sbjct: 461 LMRQLLAGKTNSYTLEKRYIRKDNSLVWATLAVSLDYNSAGQPVGLIGAVEDISDRKQAE 520 Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD--------DIEIA 363 E E D + S G++ AN + + + ++ + Sbjct: 521 EALKEREERLRAFFDASIDAVLLTSPDGSVLTANRAAQDMFGLTEQEIIAVGCDGLLDTS 580 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKAN 422 L +L + + RSD + A Q +M + Sbjct: 581 DPLLPILLEERTRTGRTRGELRYRRSDGSLFEAEMSSGLYQDAQGMTLTSMVIRDITERK 640 Query: 423 QFPENMPQ--------NGIEPEDVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINREG 472 Q E + + +D + + + ++ A + G + ++ Sbjct: 641 QAEEARLRSLDLQNKLIIATKDILDEQTIEGLLMTVAKAAQTVTNAQVAASGYQVGDK-- 698 Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + + +P + L ++ S + E Sbjct: 699 RFDFAVHSPHAIARFPNSEHLSGRCGGIFKKLFDSRYPGIIRLSEMELPETPREWNLASD 758 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLT---------MHDISEWKQEK------NKLSHAKKI 577 + L + + D + Q + A+ Sbjct: 759 HPPLRGLLIAALTNTKGKPEGLISVSTKANGTFTAEDETLLGQLAGVASLGLQHLSARIE 818 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE+ + KS+FLA +SHEIRTP+ +IG +E+ + P+ EY + +SG + Sbjct: 819 AEQANRAKSEFLANMSHEIRTPMNGVIGLTEL----ALMTVEEPKAREYLQMVKKSGLTL 874 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696 LDI+ND+LD+SKIE+GK+ L +P SL E++ + + + A K + + A ++P Sbjct: 875 LDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQVAPDVPDA 934 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTN 750 ++ D ++Q+ N++ NA+ F+ G + +S + V D G+G+ Sbjct: 935 LMGDRGRLRQVLTNLVGNAVKFSHKG-WVRVSVGLDDGNVSSEQATISFEVADEGIGIPA 993 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +L F Q+ +S ++ GTGLGL ++K +V+ G S G+ Sbjct: 994 DKLSTIFDSFAQVDSSAHVKYGGTGLGLSISKHLVELMGGTIQARSEMGIGSTFSFT 1050 Score = 137 bits (345), Expect = 8e-30, Method: Composition-based stats. Identities = 50/431 (11%), Positives = 117/431 (27%), Gaps = 34/431 (7%) Query: 177 GFRGFGIVHVNRVDND-------PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 G+ G+V R + D + L E + Sbjct: 250 GYILAGVVAAYRESGQGHQSVAGAIRSFLQADAGYRLLVENSSDVIVRFDQDLRCTYAN- 308 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYT 284 P + + L T +L E E + Sbjct: 309 PAIESAFGQPARFYIGRSLPEAGIDDAGFAGLETILHKTLSEGVEKTAEFVRQTESGRQV 368 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343 ++++ + L ++ E E ++ + L Sbjct: 369 FHCRCMPERSSNGQIDSVLVSCRDITV---LREQEARYQSVFEQAAVGLARAKLDNRLLQ 425 Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLH 401 N + Y + + L ++ + + L R + + Sbjct: 426 VNQKLCDILGYSRDELL-------NLRYEDLTHPDDLERELPLMRQLLAGKTNSYTLEKR 478 Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 I+ + + + T N + + G + D + + ++ +L + +A+ Sbjct: 479 YIRKDN-SLVWATLAVSLDYNSAGQPVGLIGAVEDISDRKQAEEALKEREERLRAFFDAS 537 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 D + + + +G +L+ NRA +FG ++I+ L+ + P + + Sbjct: 538 IDAVLLTSPDGSVLTANRAAQDMFGLTEQEIIAVGCDGLLDTSDPLLPILLEERTRTGRT 597 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIA 578 R + L + + + + + DI+E KQ + + + Sbjct: 598 RG----ELRYRRSDGSLFEAEMSSGLYQDAQGMTLTSMVIRDITERKQAEEARLRSLDLQ 653 Query: 579 EKESSHKSDFL 589 K D L Sbjct: 654 NKLIIATKDIL 664 Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 72/179 (40%), Gaps = 13/179 (7%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHY 512 ++E +SD I +++ N A+ FG P + + ++ + + Sbjct: 284 YRLLVENSSDVIVRFDQDLRCTYANPAIESAFGQPARFYIGRSLPEAGIDDAGFAGLETI 343 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570 L + LS + +T E + ++ R + ++ ++ DI+ ++++ + Sbjct: 344 LHKTLSEGVEKTAEF-VRQTESGRQVFHCRCMPERSSNGQIDSVLVSCRDITVLREQEAR 402 Query: 571 LS-HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIE 625 ++ A + K + L ++ L I+G+S + + N R+ L +P +E Sbjct: 403 YQSVFEQAAVGLARAKLDNRLL-----QVNQKLCDILGYSRDELLNLRYEDLTHPDDLE 456 >gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis subsp. subtilis str. 168] gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp. subtilis str. 168] gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5] gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis] gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis subsp. subtilis str. 168] gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto BEST195] gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis BSn5] Length = 611 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 84/374 (22%), Positives = 156/374 (41%), Gaps = 23/374 (6%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + E E +L S++ +DG+ NR G I+ N +L E L P Sbjct: 248 TRELEDAQAMTEGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 T L + + S+ L + ++ +I ++ Sbjct: 308 ITSLLGLQENYTFEDLVEQQDSMLLEIERDDELTVLR-----VNFSVIQREHGKIDGLIA 362 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++D++E ++ + + +F+A VSHE+RTPLT + + E + + Sbjct: 363 VIYDVTEQEKMDQE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAW- 407 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + ++ +VNDLL +SK +S + E + + +S I + Sbjct: 408 -ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFE 466 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 E+ + + + + D + Q+ NI+SNA+ ++P GG + S EE Sbjct: 467 -MTKEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE 525 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ + V+D G+G+ ++EK F ++ ++ + GTGLGL +AK MV A+ G + Sbjct: 526 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWAD 585 Query: 796 STPAKGTLIEIIFP 809 S KGT I P Sbjct: 586 SIEGKGTTITFTLP 599 >gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957] gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957] Length = 726 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 128/757 (16%), Positives = 272/757 (35%), Gaps = 64/757 (8%) Query: 91 AHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSD---------ILHIDPNNHIGDLLKRQ 140 A G + ++ L +G + G + ++ + + R Sbjct: 1 AAGRVALVNAALLAMLGLPPDTALAGRPMAELFRLLAFRGLYGPGDPEELARSAQAIDRA 60 Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +L +G D+A+ P+ G + A + Sbjct: 61 QPQRR--SLRAEDGR----WFDIASNPL-------PGGGWVCVATEQTAPRQQEAALMQR 107 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 ++ + + + L + + + + L P Sbjct: 108 LRELHEALRRLPAGFGLYDAGHRLRLFNDTYETLLLLPPGTLRPGLHLAEVVALIQRHQP 167 Query: 261 LLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFE------YLSHRNHPSLSA 313 + + ++ F ++Q +++ S E + + Sbjct: 168 MGPDDLQIFADRLGFDRNRRHEGMRQRQDGRSIRFASIPMPEGGFLVTLEDVTSLRAAEN 227 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 L + P VY L AN ++ L + E + Sbjct: 228 EAKRRAALLDGVLAALPHGVCVYGADQRLRMANAAYDRLMPEAASRPGEHLREI-CRRAM 286 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 +D+ A++ + + D A R+ + +++ P Sbjct: 287 AGFADDEALEAIYRRQLD-FARPAHKRVR----HDGTAISGLTAPLPDG-------GHIS 334 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + + + L +++++ G+ + +R+ ++ N +++ G E++ Sbjct: 335 VVSDITALHQAEEAARQRAALLQAMVDSMRQGVCLFDRQHRVVVANALAARMIGLAPEEM 394 Query: 493 L-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIK 546 P + +LE L + +++ + Sbjct: 395 APGTPLQTLRRLQYERGEFGQGADAEGYYEEISLEPGLKLDHFLRTRPNGQVIEMSTDPT 454 Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606 + D++E ++ + +L A+ +AE+ ++ K+ FLA +SHE+RTPL A+IGF Sbjct: 455 P---DGGHVRVYTDVTEERRARAELERARAVAEEANAAKNRFLATMSHELRTPLNAVIGF 511 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 SE + GP E+A I +G +L +++++L+++K +G + + + L Sbjct: 512 SEALAADPSGPDT----AEFATAIHDAGRHLLALIDEILEVAKAGAGTVRVETRALYLPS 567 Query: 667 AVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725 + A L++ A I + + ++PR A+ R ++Q+ LN+LSNA+ FTP+GG++ Sbjct: 568 VLEGAARLMRQSAEAAGITLTLAPPPADLPRARAEERRLRQVLLNLLSNAVKFTPAGGEV 627 Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785 + V +RVRD+G+G+ +LE+A +PF Q+ S R G+GLGL LA+A+ Sbjct: 628 ALEAEALPGGAVEIRVRDSGIGIEPGQLERAFEPFVQLETSHARRYGGSGLGLYLARALA 687 Query: 786 DANMGKFYIFSTPAKGTLIEIIF------PLYDTSHP 816 + + S +GTL + P + P Sbjct: 688 QSMGATLALESRRGEGTLARLRLAPATPSPAHPDQEP 724 >gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 346 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 86/362 (23%), Positives = 167/362 (46%), Gaps = 25/362 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E + SIL DG+ ++N +G I+ N+A LF +L K T + Sbjct: 5 QEKRMMQSILSCMVDGVLVLNIDGCIIQANKAAESLFLVREGVLLGKRLTQI---SENRE 61 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566 ++ + E+L+ E + + + + +K + HD+++ + Sbjct: 62 ISDMIDEVLTTGNESFTETTI---SPSTLVFRVHAVPRKDHHERIEGAIVVFHDVTDARN 118 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 +S F+ VSHE+RTPLT+I GF E + + + + Sbjct: 119 F--------------DQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAM--ENSDTCRRF 162 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ID N + ++ DLL +S IES + ++ +P L ++ +++ +EK + + Sbjct: 163 LSIIDTETNRLTRLIEDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHV 222 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 +P I AD + Q+ +N+L NAI +TP G+I+I + +I V+D+G+ Sbjct: 223 EFIHPYPMPLIQADEDLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDS-RIITTVKDSGM 281 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ + L + + F ++ ++ + GTGLGL + K +V+++ G+ ++ S KG+ + Sbjct: 282 GIPHESLPRVFERFYRVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGV 341 Query: 807 IF 808 F Sbjct: 342 SF 343 >gi|146283877|ref|YP_001174030.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri A1501] gi|145572082|gb|ABP81188.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri A1501] Length = 1426 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 121/738 (16%), Positives = 247/738 (33%), Gaps = 72/738 (9%) Query: 89 IDAHGYLKEISEE---LPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWY 144 ++ + +S+ + +G + L + L ++ + + Sbjct: 606 VNQEAEIVHMSDRAGNFLRYVGGEPS----LNLTTLVHPQLRLELRTALYQAAHTGKSVE 661 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 + +G + YV + +V R Sbjct: 662 ARRVRLERDGRSYYVNM---------------------VVRPFRD--------------- 685 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263 +E + V ++ + S K+ V L H + L+ T Sbjct: 686 ---NEAGSDYMLVLFDEVEACMDSSTLEDPDTKDSVLTQLEAELQHTKERLQITMEHSET 742 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENL 321 S E E+ IN + + T + + E L+ N+ S + + Sbjct: 743 STEELRASNEELQAINEELRSATEELETSKEELQSINEELTTVNYELKSKVDETSKINDD 802 Query: 322 TPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 + I FV + + P + D ++ LD P L+ + A Sbjct: 803 LQNLISSTDIATVFVDRKMRIKWFTPRARDIFNVIGNDAGRSLFDITHRLDYPLLAKDAA 862 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L+ +R +RE + D Sbjct: 863 EAFEELHLVEREV-----------RDREGQHWYLARFLPYRTLDDRIEGAVLTFIDISDR 911 Query: 441 RINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 R + ++ L + ++T I ++ +G+I + N + GY ++L + + Sbjct: 912 RRAEEELRAGEAHLKLLAQSTKGYAIITLDCDGLITTWNCGAELILGYRETEVLGQTVDI 971 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556 + +L Q + + ++ L ++ L + + Sbjct: 972 IYTEQDRQAGVPEAERQRALQHGQATD-ERWHARRDGSRCFLSGLLNPLVDGTGKVIGFA 1030 Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 D++E +Q ++ + + + + K F A +SHE++ PL I ++ + + Sbjct: 1031 KIARDLTEERQRSSEQQNELESVQAANLQKDQFFAVLSHELKHPLNLIQLNTD-LVARSQ 1089 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 NP + I + I++DL+D+S+I +GK+ LHF + + + ++ Sbjct: 1090 AVKNNPSLHKATQSIQNAVRSQSRIIDDLMDVSRIRTGKLKLHFATLRYQDVLRGIEAVF 1149 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A + I + + I AD + QI N+L+NA F+ G +I + + Sbjct: 1150 APLAQSENISFESFKPDAPIYIQADPTRLDQIIWNLLNNAWKFSKGGERICMQLE-REGD 1208 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 + L V DTG G++ L K FGQ Q G G+GL L K +V+A+ G+ Sbjct: 1209 QARLDVIDTGEGISADFLPKVFDMFGQAEMQHAQRAKHGLGIGLALVKQLVEAHNGRIEA 1268 Query: 795 FST-PAKGTLIEIIFPLY 811 +S +G + P++ Sbjct: 1269 YSEGIGRGARFSVWLPVH 1286 >gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 581 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 92/454 (20%), Positives = 186/454 (40%), Gaps = 29/454 (6%) Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416 + + + + A + ++ + + + + I Sbjct: 156 EEVYAAVRDVDRTILLGAVVSILAAGLLAVWVAANVSRPVKELTAISRRIAQGQIDTIQI 215 Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476 + E + E + I + + E +L ++L+ DGI +++REG+I Sbjct: 216 DVSGKGEMEELAHAFRLMTERLRDSI--KAVSSERDRLSAVLQRMGDGIFLLDREGVISL 273 Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536 N A ++F E ++ F + + ++ S ++ Sbjct: 274 LNPASERIFKLEAEGVIGHSFVEAIRDH---EIHSVFEHARSSGKQEMGFVEL----AAG 326 Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 + L II L S Y + + D+SE ++ + + DF+A +SHE+ Sbjct: 327 RRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRDFVANISHEL 371 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTP++++ +E ++ + + I + + +V +L D+S IESG+ Sbjct: 372 RTPISSLKLLTETLQEG--AASDPAVAAGFIDKIHLEVDKLAQLVTELSDLSAIESGQAV 429 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L +P + A+ A ++ A I + +P++ D V+Q+ +N++ NAI Sbjct: 430 LRLQPGDISTAIKLAAERLRPQAERAGISLGVELPETLPQVKLDENRVEQVLVNLVHNAI 489 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP GG+I I T + +++ V D+G+G+ +L + + F ++ ++ GTGL Sbjct: 490 KFTPKGGRIKIG-ARTQGQTLVVYVSDSGIGIPEEDLTRVFERFYKVDKARSS--GGTGL 546 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL ++K +V A+ G + S KG PL Sbjct: 547 GLAISKHIVQAHGGTIWAESVYGKGATFSFSLPL 580 Score = 42.7 bits (99), Expect = 0.26, Method: Composition-based stats. Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 17/244 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + ++ + A +IG + I + ++ G Sbjct: 262 IFLLDREGVISLLNPASERIFKLEAEGVIGHSFVE--AIRDHEIHSVFEHARSSGKQEMG 319 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 +E + + A P+ S++ +V + + S Sbjct: 320 F-----VELAAGRRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H + E + P +K+ + A L TE L E Sbjct: 369 HELRTPISSLKLLTETLQEGAASDPAVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 + I+ + + S P + + E + Sbjct: 425 SGQAVLRLQPGDISTAIKLAAERLRPQAERAGISLGVELPETLPQVKLDENRVEQVLVNL 484 Query: 326 VDKC 329 V Sbjct: 485 VHNA 488 >gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO] gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408] gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO] gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162] gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082] gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO] gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933] gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410] gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408] gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68] gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162] gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01] gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B] gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C] gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082] Length = 611 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 85/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454 R I+ R + K + E + + + ME E +L Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+L +DG+ +R G +++ N L E+ + + L+ L Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT----LR 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572 ++L L++ T ++ +L + + + S +HD++E ++ + + Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690 + ++ ++NDLL++S++++G L E V+ +E V+ + + EK IR F Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D + Q+ NI++NAI ++P GG I ++ V+L + D G+G+ Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVVLSITDQGLGIPK 542 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ GTGLGL +++ ++ A+ G + S KG+ I Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|46201997|ref|ZP_00053969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 706 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 89/513 (17%), Positives = 185/513 (36%), Gaps = 32/513 (6%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + + + + +D P F+ G L + S L YK + + Sbjct: 217 ETQISRQTQAQTELRSILDNMPDIFYRTDAQGRLLMLSRSVESLLGYKPEEVLGQDSAFF 276 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 D+ + L + + + RL + ++L + + Sbjct: 277 H-----GSDDSRPMLVAALEAAGGSILDYELRL---RHKDGHTLWASTSSRFYYDAEGNR 328 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 G+ + + + + + ++L+A+SD I + +G +L+ N ++ FG Sbjct: 329 AGTEGVVRLIEERKQAEFHIRENQALIQAMLDASSDAIMLFRPDGTLLAVNGVMAARFGR 388 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++ + +T ++ + L L I Sbjct: 389 KASELTGSCLWDMFPPSVAKAREVAVTRVVETG-------EAIHYLDRRGELYLDNSIYP 441 Query: 548 LPFSSCY---SLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 +P DI+ + +L+ E+ ++ F SH++R PL I Sbjct: 442 VPGVDGVPDKVAVYSRDITAQTLAEQRLAIQMTELERSNAELEQFAYVASHDLREPLRMI 501 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE---SGKMNLHFE 660 + + +R+GP +E+ + + +V DLLD S+IE S + + E Sbjct: 502 SSYL-SLLERRYGPKLEGDGLEFLAFARDGAKRMDRLVLDLLDFSRIERKGSPIIAMEAE 560 Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720 PV + +A+ + +E + + R++ D V ++ N++ NA+ + Sbjct: 561 PV-----LRQALRHLAPSMDECGAQVEMAEDGGAVRVMGDPEQVIRLFQNLVGNAVKYRA 615 Query: 721 SGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 G +S + E + D G+G+ E+ F ++ R GTG+GL Sbjct: 616 PGRVPRVSVSWRRDGGEWECTIADNGIGIDPQYFERIFGIFQRLHTPD--RYTGTGIGLA 673 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812 + K +V+ + G+ ++ STP +GT P D Sbjct: 674 ICKKIVERHSGRIWVDSTPGQGTAFHFTLPAAD 706 Score = 71.6 bits (174), Expect = 6e-10, Method: Composition-based stats. Identities = 33/321 (10%), Positives = 85/321 (26%), Gaps = 15/321 (4%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG- 145 + DA G L +S + +G +++G + L + Sbjct: 242 YRTDAQGRLLMLSRSVESLLGYKPEEVLGQD-SAFFHGSDDSRPMLVAALEAAGGSILDY 300 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + L +G L+ ++ Y +G G +V + + Sbjct: 301 ELRLRHKDGHTLWAST--SSRFYYDAEGNRAGTEG--VVRLIEERKQAEFHIRENQALIQ 356 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPL 261 + + + + + + + + S L + + + Sbjct: 357 AMLDASSDAIMLFRPDGTLLAVNGVMAARFGRKASELTGSCLWDMFPPSVAKAREVAVTR 416 Query: 262 LTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 + ++ + ++ + Y G + S + + A Sbjct: 417 VVETGEAIHYLDRRGELYLDNSIYPVPGVDGVPDKVAVYSRDITAQTLAEQRLAIQMTEL 476 Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSD 377 + +++ + S+L L + + +E G L+ D K D Sbjct: 477 ERSNAELEQFAY-VASHDLREPLRMISSYLSLLERRYGPKLEGDGLEFLAFARDGAKRMD 535 Query: 378 NNAIKPVMLYRSDRTCIAASA 398 + + R +R A Sbjct: 536 RLVLDLLDFSRIERKGSPIIA 556 >gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax benzoatilyticus JA2] Length = 811 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 131/691 (18%), Positives = 242/691 (35%), Gaps = 37/691 (5%) Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197 + + + + P G Y A P+ RG + Sbjct: 130 RGRTIELARISRLPAPGQLDYGGYLADASPVLPARAAVPVLRGVLAADGRPLTLVGLLDP 189 Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257 L + H E G S++ + + +P + ++++ + DD+ + Sbjct: 190 AELARLQRHALE-DPGTSAMLVRRDGLVLSATPAAVVAAGERIAAGEDGRFTVDDLPQHV 248 Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---------------NNSKESFEY 302 + + L ++ Sbjct: 249 TAARTLASQPELTVLVTRDLDVALATWRRMVAWLAAGAAAAAALIAAMTFVAERSVRARE 308 Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361 + R + E V F G L + N +L T + Sbjct: 309 AARRQRDAAQLAVALRERELSVIVKSVQELIFRTDAEGRLTFVNARWLAATGQPGERLLG 368 Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421 A L + +L S AA + + Sbjct: 369 QA------LVDLMAPSSREAVAALLAPSASGSRAAQVSFA------GTEQRLFDLAVSPL 416 Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 + + G + + +R+++ ++ +L+ +A+++RE ++ NRA Sbjct: 417 IEGGRVVGHAGSAVDVTERCAAQRELQEQLALSALMLDTMPLPVALMDREAAYVTVNRAW 476 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G P ED++ K + +L V + E+L + E + + +++ Sbjct: 477 EQQSGIPREDLVGKRASDYLLPAEAEVHERHNREVLERGGSLSYESEVSQADGTRRTMAV 536 Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 + DI+E+++ + A+ IAE+ S KS+F+A +SHE+RTP Sbjct: 537 TKAAVTDADGRPRGLIAALTDITEFREADRTMREARDIAEEASRAKSEFIANISHELRTP 596 Query: 600 LTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 L AIIGFSE + R + R I +G +L +VNDLLD+SKIES H Sbjct: 597 LQAIIGFSELGMVRGR----AHERLASMFGDIHAAGQRMLALVNDLLDVSKIESTVGTFH 652 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 E L V E + +R+ + + + D +Q+ N+L+NA+ F Sbjct: 653 LERTDLRPLVREVAREIDPLLARRRLHLDLALSEGPLVAKVDPMRFQQVVRNVLANAVRF 712 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 +P G I + + ++++ VRD G G+ ELEK + F Q + + GTGLGL Sbjct: 713 SPDGETITVRGDVDARNQIVVAVRDHGPGIPPGELEKIFEAFVQ-SSKTKDGSGGTGLGL 771 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + +V+A+ G + G+ I P Sbjct: 772 AICRKIVEAHGGSIQAENADGGGSRFTIAVP 802 Score = 67.7 bits (164), Expect = 8e-09, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 60/252 (23%), Gaps = 12/252 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144 + DA G L ++ G +++G L D+ + LL + Sbjct: 338 LIFRTDAEGRLTFVNARWLAATGQPGERLLGQALVDLMAP---SSREAVAALLAPSASGS 394 Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204 GT + DLA P+ G G + + + Sbjct: 395 R-AAQVSFAGTEQRL-FDLAVSPL-IEGGRVVGHAGSAV--DVTERCAAQRELQEQLALS 449 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + + ++ + + + + + + Sbjct: 450 ALMLDTMPLPVALMDREAAYVTVNRAWEQQSGIPREDLVGKRASDYLLPAEAEVHERHNR 509 Query: 263 TSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E SL + + + + T + + ++ + D Sbjct: 510 EVLERGGSLSYESEVSQADGTRRTMAVTKAAVTDADGRPRGLIAALTDITEFREADRTMR 569 Query: 321 LTPETVDKCPIP 332 + ++ Sbjct: 570 EARDIAEEASRA 581 >gi|308126034|ref|ZP_05778782.2| PAS domain protein [Vibrio parahaemolyticus K5030] gi|308114726|gb|EFO52266.1| PAS domain protein [Vibrio parahaemolyticus K5030] Length = 780 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 119 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 178 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ S + T E+ + Sbjct: 179 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 238 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 239 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 291 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 292 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 347 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 348 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 407 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 408 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 467 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 468 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 513 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E E+ K + Q + Q + + + +A G Sbjct: 114 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 172 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + + G +++G+ DV P + + + L Sbjct: 173 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 232 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G +L +P YS++ G GFG ++ + + Sbjct: 233 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 288 Query: 213 GHSSV 217 Sbjct: 289 HELRT 293 >gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii HTCC2633] gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii HTCC2633] Length = 770 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 112/672 (16%), Positives = 222/672 (33%), Gaps = 26/672 (3%) Query: 151 PIEGTNLYVPIDLAA---LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 P +G+ L + A RE++ R GI R L + + + Sbjct: 95 PYDGSTLETWRERLADIFRSHLEVEREYTQIRFIGIEDGGREIVRVNRLAEGYEIVDAQE 154 Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267 + K + P + + ++ Sbjct: 155 LQRKGEEFYFQPGLMTPQDAIYTSPITVNREFGGPSGDMTPTVRTIVSVRTPEGDPFGII 214 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 + Y + ++ YL + F G PE + Sbjct: 215 VINSDIRVIMEEALLEAAPDYEVYISDSQDNFIHYLPDQGVVRNEFAFQAGFEP-PELLS 273 Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + I + L+ ++ + Sbjct: 274 LDAEALQDVDGYTYVLHTLEAGEGGGNGLIFRILVGEPNEALMQGAYAIRQQSMLLAVSL 333 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + E + A+ + + I + + Sbjct: 334 VVLTAIGSLLFVTSLTRPLGELTEAVLTYGQSREPIAISFSNNDEIGELGRAFMEMTQAL 393 Query: 448 EIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +L + E DG+ ++ +G I S N A +FGY ++++ + +V L Sbjct: 394 KQ--NELSANTFENIIDGLILMRPDGSIQSLNPAARVMFGYAEDELIGQDISVLLPDGVR 451 Query: 507 SVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 + +I + +T E E + L + + + L + DIS Sbjct: 452 QEREGAVRKISCFIEQHLVGETFEAEACMKNAEPLPVELTLSDVQRADGKLFGLMIRDIS 511 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNP 621 KQ + K +F++ V+HE+RTPLT+++G +++ + + Sbjct: 512 ARKQMEV--------------MKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQ 557 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + RS + + +VND+LD+ KI +GK+ E V D+ V + + ++ A E Sbjct: 558 KASTLLDMAQRSCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEE 617 Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741 + + P + D+ Q +N+LSNA ++P+G + I T + + + V Sbjct: 618 HDVQFVLDLKADDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISV 677 Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801 D G G+ + F Q +S R G GLGL + K +V+A G+ + +G Sbjct: 678 ADNGPGIPEEFQPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDTKVGEG 737 Query: 802 TLIEIIFPLYDT 813 T+ I+ P+ D Sbjct: 738 TVFHILLPIVDA 749 >gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 637 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 113/426 (26%), Positives = 201/426 (47%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G I + N ++ GY ++I+ + F+VF Q + Sbjct: 275 IEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + K+ ++I S +S DIS+ + + L Sbjct: 333 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF+++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMD-----SPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ + Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + I ++AD + + Q+ LN+LSNAI + GQ+ I T+ +V + V DTG G+ Sbjct: 508 PDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAE-QVTVSVVDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TP +G + P Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPF 623 Query: 811 YDTSHP 816 P Sbjct: 624 VRVQPP 629 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 + +G+ + + + A Y N E GF R + + + Sbjct: 342 TEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPASQRPQIGHILRAGQHLLKLINEV 459 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + ++L+ ++ + + E N P Sbjct: 460 ------LDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|298246762|ref|ZP_06970567.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297549421|gb|EFH83287.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 863 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 99/686 (14%), Positives = 225/686 (32%), Gaps = 43/686 (6%) Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191 I R T + + P T+L + I + + +++ G Sbjct: 197 AIARA-ARGETVRFEAKIHPR--TDLSLDILMTITALRDASQQVEYLICAG--RDITERK 251 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + L L + + +E + L + Sbjct: 252 HAEDELRVLIDAIPQLVWMAR--PDGSREYSNRRWCDYTDMTSEQYQGDGWLQAIHPDDQ 309 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + + ++ E +++ + ++ Sbjct: 310 QHVLEVWQRAVQTDGPYETELRLRQGTTGAYRWFLVRAMQHKDDQGTTLKWFGTCTDIDD 369 Query: 312 SAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 ++ + E + P + G L Y N + ++ G Sbjct: 370 QKQAEQRLKASEENWRVLAETVPQLVWTARPDGGLDYVNQR-CRDLAQTDAEHLQGDGW- 427 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 + P+ + + + + RL + ++ + Sbjct: 428 -SQFVHPEDLE-RVLALWRHAFATGESFESEHRLKDCRT--GAYRWFLVRAMPMRDETGQ 483 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + G + D + + + + +++++ GI E I+ N + ++ G Sbjct: 484 TVKWFGTGTDIEDRKRIEEALRQSQERASTLMDSNIIGIFATEGE-QIVDANDTLLRMTG 542 Query: 487 YPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI- 543 Y ED+ + E+ + EK + K+ L + + Sbjct: 543 YTREDLRAGRINWMSMTAPEYLARTRQAQQELATQQYLTPYEKEYVC--KDGSRLPVLVG 600 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 + SS + D S K+ + + K F++ SHE++TPLTA+ Sbjct: 601 RVALQHHSSQAIAFVLDNSARKELEQR--------------KDAFISTASHELKTPLTAM 646 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + ++ +++ G + ++ V +V +LLD+SKI++ ++ E V Sbjct: 647 KLQA-ILLHRQLAKQGLQASAPTLSSMETQIIKVTRLVEELLDVSKIQADRLEYLQETVG 705 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 LD + E + +Q I++R + ++ + D + Q+ +N++SNAI ++P Sbjct: 706 LDALLHEVVDTMQPIHATHTIVVRGAAPCSL---VGDKDRLGQVFINLISNAIKYSPGAE 762 Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 + I + + V +RV D G+G+ + +K + F + + Q G G+GL + Sbjct: 763 TVEIDLSASEE-TVAVRVHDHGLGIPRAQCDKIFERFYRATDPNQKAIPGLGMGLYIVAE 821 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809 +V + G + S KG+ + P Sbjct: 822 IVRHHGGTLTVESEVGKGSTFTVTLP 847 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 30/387 (7%), Positives = 85/387 (21%), Gaps = 17/387 (4%) Query: 85 FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143 W G + + + + G + ++ + Sbjct: 267 LVWMARPDGSREYSNRRWCDYTDMTSEQYQGDGWLQAIHPDDQQHVLEVWQRAVQTDGPY 326 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + T Y + A+ + + FG K ++ Sbjct: 327 ETE-LRLRQGTTGAYRWFLVRAMQHKDDQG--TTLKWFGTCTDIDDQKQAEQRLKASEEN 383 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE-----YYAHKDDVLKTEK 258 + L E + + L + + + + + Sbjct: 384 WRVLAETVPQLVWTARPDGGLDYVNQRCRDLAQTDAEHLQGDGWSQFVHPEDLERVLALW 443 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314 + ES E +++ + ++ ++ + + Sbjct: 444 RHAFATGESFESEHRLKDCRTGAYRWFLVRAMPMRDETGQTVKWFGTGTDIEDRKRIEEA 503 Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + + +D I F + AN + L +T Y +D+ + AP+ Sbjct: 504 LRQSQERASTLMDSNIIGIFATEGEQIVDANDTLLRMTGYTR-EDLRAGRINWMSMTAPE 562 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 L + + + + + + + Sbjct: 563 YLARTRQAQQELA-TQQYLTPYEKEY--VCKDGSRLPVLVGRVALQHHSSQAIAFVLDNS 619 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461 + + +L + L A Sbjct: 620 ARKELEQRKDAFISTASHELKTPLTAM 646 Score = 81.2 bits (199), Expect = 7e-13, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 87/274 (31%), Gaps = 22/274 (8%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363 N ++ P FV + YAN S L+ + + Sbjct: 1 MSNAKQTKRVTPGSRETLLHMLETLPDAVFVVDDTEAIIYANASARTLSGTTREEACGTS 60 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 L + + V + R + + L ++ P ++ Sbjct: 61 LWCGALHL----VSPSLYQAVHKAKETREPTEVT----YVSPATNRWLHVSLSPTDEGLA 112 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 E ++ + + +L++ DG+ I+ EG++L N+ Sbjct: 113 L--------FFHEQLEPLPLQHALSQNEHLYRDLLDSVGDGVMIVTPEGLVLDINQLSLA 164 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542 E ++ P T ++ SV+ +L ++ R +T+ + + L + Sbjct: 165 DAHLQWEVVVGTPLTDLPAWSSDSVVQEHLRTAIARAARGETVRFEAKIHPRTDLSLDIL 224 Query: 543 IIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572 + I L +S + DI+E K +++L Sbjct: 225 MTITALRDASQQVEYLICAGRDITERKHAEDELR 258 >gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144] gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909] Length = 565 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 88/397 (22%), Positives = 184/397 (46%), Gaps = 31/397 (7%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475 + + D+ R+ K +I+ +L + LE + +I++ G I+ Sbjct: 191 VRVPESNVKETRALFVTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N A ++F P + + K + F++ + ++ + + + Sbjct: 251 VANHAYYQVFN-PDQMVENKSYIGFIDDSIEKLIIESFR----TEKVIYEQLEVDINNVH 305 Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 K + I + +HDI+ ++ + + + +F+A V Sbjct: 306 TKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651 SHE++TP+T+I GF+E + G + + ++ + N I + N + +V DLLD+S IE Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIE 408 Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711 K L ++L E I +Q A KRI I++ ++ I A + Q+ N+ Sbjct: 409 QQK-ELEINYMNLSELAINIIDNLQTQAQNKRIKIQSEIEKDVI-IEAHENKIAQVITNL 466 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 LSNAI+++ ++I+ + ++ +V L ++D G+G++ + ++ + F ++ ++ Sbjct: 467 LSNAINYSSEDNKVIVRV-YRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDS 525 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V+A+ G+ + S P KG++ +++F Sbjct: 526 GGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562 >gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1] Length = 722 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 123/673 (18%), Positives = 226/673 (33%), Gaps = 52/673 (7%) Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226 + R +V R D+ ++ + D+ + Sbjct: 54 AVSDIQAAAGEMRALALVVAARGDDAAAVAYRQQADIAVQSLRELRHLVDASPGLADVAA 113 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDV-------------------LKTEKYPLLTSEES 267 + P L + D L T + + ++ Sbjct: 114 IAAHLPKLMTIQAQALELADQGRTDAAWDMLHGRDYESLLAELHLCLTTCQASVKAGLDA 173 Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327 L Q L L + R + + E T + Sbjct: 174 LLATQAGHARTGLAAIAVATPILALGSLLLLRRAARVSRANDEARSELAASERRFRGTFE 233 Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386 + V G N F +T Y V+ + + +D + ++ Sbjct: 234 LAAVGIAHVGLDGRFLRVNARFRDITGYDVVE-FDRLDFAAITYPDDLDADLERVSDLL- 291 Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446 S ++ + + + +T + + + + + + Sbjct: 292 ---SGRLATYSMDKRYVRKDG-SLVWITLTVSLVRDDDGAPLFFISVIADVSARKAAEAA 347 Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 + +L+A SD + + + G +L+ N A + G P E I+ K F Sbjct: 348 ARDNAAAVRELLDAASDRVVVADASGQVLAVNAAAAAGLGLPGEAIVGKTFAEVFPGKVG 407 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 L + L R G + L +L D + Q Sbjct: 408 ENRLAQLRRAVELGRRMRFTDERAGILFDIIAAPL---PTPADALPRAALFARDATAMIQ 464 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 ++ AE S KSDFLA VSHE+RTPL IIG +V+ +P + Sbjct: 465 A-------RQAAEAASQAKSDFLANVSHELRTPLNGIIGMGQVLAASNL----DPDQRQC 513 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 I+++ +L +V +LLD+S++ES K+ L +P L + + + A EK + + Sbjct: 514 LADIEQAAGALLHLVENLLDLSRLESEKLALDNQPFVLSSILQGVEATLAPLAQEKGLEL 573 Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----------SNE 735 + A ++P + D ++Q LN+ NA+ FTP+G + I Sbjct: 574 SAAVAGDVPELLYGDGGKLRQALLNLGGNAVKFTPAGS-VTIEAYCAKPCVLAGPEGETV 632 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 EV VRDTG+G+ + E+ + F Q+ S R GTGLGL +++ +++A G+ + Sbjct: 633 EVGFAVRDTGIGIAKADQERIFERFTQVDASSTRRFGGTGLGLAISRGLIEAMGGELAVD 692 Query: 796 STPAKGTLIEIIF 808 S +G++ Sbjct: 693 SEHGQGSVFRFCL 705 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 20/254 (7%), Positives = 63/254 (24%), Gaps = 13/254 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGK 146 + G ++ G + + ++ +D + + DLL + T+ Sbjct: 242 VGLDGRFLRVNARFRDITGYDVVEFDRLDFAAITYPDDLDADLERVSDLLSGRLATYSMD 301 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 +G+ V I L + + F ++ A + Sbjct: 302 KRYVRKDGSL--VWITLTVSLVRDDDGAPLFF--ISVIADVSARKAAEAAARDNAAAVRE 357 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH------KDDVLKTEKYP 260 L + V + + + + + + +A ++ L + Sbjct: 358 LLDAASDRVVVADASGQVLAVNAAAAAGLGLPGEAIVGKTFAEVFPGKVGENRLAQLRRA 417 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH-RNHPSLSAYFDEGE 319 + ++ ++ L + + + + + + A Sbjct: 418 VELGRRMRFTDERAGILFDIIAAPLPTPADALPRAALFARDATAMIQARQAAEAASQAKS 477 Query: 320 NLTPETVDKCPIPF 333 + + P Sbjct: 478 DFLANVSHELRTPL 491 >gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a] gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a] Length = 779 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 201/426 (47%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G I + N ++ GY ++I+ + F+VF Q + Sbjct: 275 IEGVKDYGIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 332 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + K+ ++I S +S DIS+ + + L Sbjct: 333 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALG 392 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ S Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPSL 507 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 ++I ++AD + + Q+ LN+LSNAI + GQ+ I + +V + V DTG G+ Sbjct: 508 PDDIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAE-QVTISVVDTGYGIAP 565 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TP +G + PL Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPL 623 Query: 811 YDTSHP 816 P Sbjct: 624 VRVQPP 629 Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats. Identities = 22/259 (8%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +G++ + + G ++IG P+ + + + Sbjct: 283 IFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 + +G+ + + + A Y N E GF R + + + Sbjct: 342 TEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + + Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 459 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + ++L+ ++ + + E + P Sbjct: 460 ------LDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPSLPDDIGV 513 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 514 VADRQRLIQVLLNLLSNAI 532 >gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2] gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2] Length = 1027 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 101/490 (20%), Positives = 205/490 (41%), Gaps = 39/490 (7%) Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 + ++ ++ ++ + L L + + A+ R A S++ + Sbjct: 265 DATWQQISGNSAIPQYDQILALKFLQQDYWMVGSKALLSTRGNRYLNLVGALSSQQVEVI 324 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 W+ + S + + + + + + + +I+ +SD Sbjct: 325 WHHQRSAVIALMVVIFLIFNILIFVYQKYLNKFLS-------LYDKQSRYEAIVAGSSDA 377 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQ 523 I +++ G ILS N + + F + + T ++ LT ++ Q Sbjct: 378 IINVDKSGTILSWNDSAAYFFDLRENQAQVRKISNIVFSHETNALDTDVLTSVIEQKKPQ 437 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEK------------ 568 E + + E+++LS+ + + + + DI+ + + Sbjct: 438 VFEVEGISNAGEKRILSISLSPVISQSTVIAPSVAALIRDITASRMNEIKIQSMNQSLEL 497 Query: 569 ------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 +L HA ++A + KS F+A +SHEIRTPL I G E+++ + + + Sbjct: 498 QVAERTQELKHATELAIAANQSKSAFVANISHEIRTPLNGIAGMMELLQREDL----SDK 553 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 + Y S + + ++NDLLD+SKIESGK+++ +L E +S I+ + L +EK Sbjct: 554 QLNYLKMAKSSVSTLTVLINDLLDLSKIESGKLDIELVQFNLIETMSSVINSMALRCDEK 613 Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEV 737 + + + +++D +KQ+ +N++ NAI FT G QI++S + Sbjct: 614 GLELLFDWTQIQHEELISDAYRIKQVLVNLIGNAIKFTAQG-QIVVSAKTYAAAQEQIWL 672 Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797 + + DTG+G+T + K +PF Q + GTGLGL +++ +V G+ I S Sbjct: 673 EVVITDTGIGLTPEQQAKLFRPFTQAHANIAKNFGGTGLGLSISQQLVQLLGGEITIHSV 732 Query: 798 PAKGTLIEII 807 +G+ Sbjct: 733 VEQGSTFTFT 742 >gi|258620901|ref|ZP_05715935.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM573] gi|258586289|gb|EEW11004.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM573] Length = 785 Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 19/400 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G N Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G +++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L ++ +E V+E L L A +K + ++P + D ++Q+ N++SNA Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S ++ + V DTG+G+ E EK + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSAECDEQYADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810 GTG+GL +++ ++ G + S G+ + PL Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%) Query: 19 KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75 + Q+L++K N + + +E + + D E L + Sbjct: 98 RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157 Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 I + + +A G + + + G +++G+ DV Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + NT W +L +P YS++ G GFG Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247 ++ + + S+ L + + T Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334 Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 K D K E +P + E + E E + Q + L + E Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393 Query: 302 YLSHRNHPSLS 312 + R L Sbjct: 394 VDATRLRQVLW 404 >gi|218779536|ref|YP_002430854.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] gi|218760920|gb|ACL03386.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum alkenivorans AK-01] Length = 1020 Score = 328 bits (840), Expect = 4e-87, Method: Composition-based stats. Identities = 113/696 (16%), Positives = 228/696 (32%), Gaps = 63/696 (9%) Query: 155 TNLYVPIDLAALPIYSRNR--EFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211 ++++V + ++ LP + F G+ + V + L K+ ++++ L + Sbjct: 208 SDIFVSLGMSPLPYTLEYGFLAITAFMTGYAVDQVVKASFAQEQL-KQNEERYQVLADNA 266 Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS------LTEYYAHKDDVLKTEKYPLLT 263 + L + + LT A + + L Sbjct: 267 GFTMWTADLDLRLTHISPSIETLTGFTPEEALAMGFDEILTPESASLGMTVLKTQQALEL 326 Query: 264 SEESSLPEQEDFH----TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319 P F N + + L++ S + S +E Sbjct: 327 ENPGRSPGSVQFEVQIKRKNGPPFWAENTGAFLRDGSGVPIGVVGLTRDISSQKAAEEER 386 Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 V+ + + FY N +F L Y+ D+ AGGL ++ P+ D Sbjct: 387 LFIQRAVESSSDAIAMCDADFVHFYHNEAFANLFGYRWPKDLVEAGGLLSIFADPRQGDE 446 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 A + + + NR + +++F + GI + Sbjct: 447 AATGLIEQGSWTGEVMT--------RSNRGRHILTDLRANVVSDKFGNLLGLIGIYTDIT 498 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498 + + ++ + + E T+D I + + +V ++ GY E++L++ F+ Sbjct: 499 EKIAVTKALKGSEERYRLVAENTNDVIWTTDLNLKWTYVSPSVFRMRGYTPEEVLQQDFS 558 Query: 499 VFLEQNTPSVMNHYLTEILSLD------LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L + + + H TE L + +++ ++ + + Sbjct: 559 EVLTRESTQDVLHIFTEELEKELTDPEPEPRSIVLDMEFLKRDGGTVWSESACSFMRDDD 618 Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGF 606 DI+E ++ + ++ ++ V+H+ L I G Sbjct: 619 GQVFGILGISRDITERRKAEEDRLKLEERLQQAQKLEAMGTLAGGVAHDFNNLLMGIQGN 678 Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666 ++ + NP Y I++ + LL ++ SGK +L++ Sbjct: 679 LSLMLLKL--EPSNPLYGR-IKNIEQHIKNATGLTRQLLGFAR--SGK--YQVTAANLND 731 Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726 VS S+ K I I+ + + + D ++Q+ LN+L NA GG I Sbjct: 732 LVSRTSSMFGRT--RKEIRIKENLQADAWPVEVDHGQIEQVLLNLLVNAWQAMSGGGIIY 789 Query: 727 ISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 I + + V L V DTG GM+ ++ PF G Sbjct: 790 IRSENVVLDQRFASSYGIPPGKYVRLSVTDTGSGMSPEVRKRVFDPFFTTKE-ISR---G 845 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 TGLGL A ++ + G ++S +G I P Sbjct: 846 TGLGLASAYGIIQNHGGVINVYSQEGQGATFNIYLP 881 Score = 95.5 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 38/396 (9%), Positives = 93/396 (23%), Gaps = 28/396 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLK---- 138 W D L IS + G + + M ++ L+ Sbjct: 270 MWTADLDLRLTHISPSIETLTGFTPEEALAMGFDEILTPESASLGMTVLKTQQALELENP 329 Query: 139 --RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 + + + G + + + G G+ Sbjct: 330 GRSPGSVQFEVQIKRKNGPPF--WAENTGAFLRDGSGVPIGV--VGLTRDISSQKAAEEE 385 Query: 197 GKRLDK------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250 + + + + H + ++F + P + +S + Sbjct: 386 RLFIQRAVESSSDAIAMCDADFVHFYHNEAFANLFGYRWPKDLVEAGGLLSIFADPRQGD 445 Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310 + + T E + + +L FG L Y + Sbjct: 446 EAATGLIEQGSWTGEVMTRSNRGRHILTDLRANVVSDKFGNLLGLIGI---YTDITEKIA 502 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI--AGGLS 367 ++ E + + Y +PS + Y + ++ + L+ Sbjct: 503 VTKALKGSEERYRLVAENTNDVIWTTDLNLKWTYVSPSVFRMRGYTPEEVLQQDFSEVLT 562 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L L + + + ++ + + + F + + Sbjct: 563 RESTQDVLHIFTEELEKELTDPEPEPRSIVLDMEFLKRDGGTVWSESACSF-MRDDDGQV 621 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEAT 461 GI + + R + +L LEA Sbjct: 622 FGILGISRDITERRKAEEDRLKLEERLQQAQKLEAM 657 Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 43/148 (29%), Gaps = 13/148 (8%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144 W D + +S + + G +++ +V D + + L+++ T Sbjct: 525 IWTTDLNLKWTYVSPSVFRMRGYTPEEVLQQDFSEVLTRESTQDVLHIFTEELEKELTDP 584 Query: 145 GKTTL--------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 +G V + A + + + G G I Sbjct: 585 EPEPRSIVLDMEFLKRDGGT--VWSESACSFMRDDDGQVFGILG--ISRDITERRKAEED 640 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 +L+++ +++ + +D Sbjct: 641 RLKLEERLQQAQKLEAMGTLAGGVAHDF 668 >gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str. F4969] Length = 571 Score = 328 bits (840), Expect = 4e-87, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 172/375 (45%), Gaps = 39/375 (10%) Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 ++EI + + L +IL++ G+ +R+ +L N K+FG E I K Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555 ++ + E + + K+L +R I P Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + + DI++ K+ + + +S F+A +SHE++TPLT+I GF+E ++ Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 + ++ + ID + + ++ D+L + +IE + + E ++DE + + L+ Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436 Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735 A +K + I +N ++ D KQ+ LN++SN++ +T GG++ + ++ S+ Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNSDM 494 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 +IL + D G+G++ +L + + F ++ ++ GTGLGL + K +V G+ + Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554 Query: 796 STPAKGTLIEIIFPL 810 S GT I I P+ Sbjct: 555 SELGVGTKIVIAIPI 569 >gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2] Length = 745 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 22/371 (5%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 +++ + S+ E+ SD + + + + N G P +++ P+ + + + Sbjct: 106 ELKEAEERARSLFESQSDLVVLRDASQRLTFVNDTFCDYAGKPRAELIGTPYLLPVIEQG 165 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563 T I + + ++ R + + + + D+++ Sbjct: 166 DDATESGGTRIHDQKAQTAF---------GPRWIAWRETLVRPHANEPAEFQCVGRDVTD 216 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + ++ L A+ A + KS FLA SHEIRTPL I+G S ++ + NP Sbjct: 217 RTESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSTLLLDTPL----NPEQ 272 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 YA + SG ++ +V +LLD SKIE+GK+NL P L + E L+ A ++ Sbjct: 273 AAYAKAVKTSGEALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAPRAQARQ 332 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVIL 739 I I +P + D ++Q+ LN+ SNA+ FT GG ++ E+ Sbjct: 333 IEIACYIDERLPLEVAGDAARLRQVLLNLASNAVKFTSRGG---VALIVEPGIWPNEISF 389 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRDTG+G+ ++ + F Q + G+GLGL +++ +V G+ + S P Sbjct: 390 MVRDTGIGIAPDAQQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALESVPG 449 Query: 800 KGTLIEIIFPL 810 +GT E+ PL Sbjct: 450 EGTTFEVSIPL 460 Score = 44.6 bits (104), Expect = 0.064, Method: Composition-based stats. Identities = 32/356 (8%), Positives = 74/356 (20%), Gaps = 22/356 (6%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 DA L +++ G ++IG + D + T Sbjct: 129 DASQRLTFVNDTFCDYAGKPRAELIG-------TPYLLPVIEQGDDATESGGTRIHDQKA 181 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 G + P + EF + + + Sbjct: 182 QTAFGPRWIAWRETLVRPHANEPAEFQ-----CVGRDVTDRTESEHALGLARDHAVSANR 236 Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264 K +V + I + + + ++ + + L + LL Sbjct: 237 AKSKFLAVASHEIRTPLNGILGMSTLLLDTPLNPEQAAYAKAVKTSGEALMSLVEELLDF 296 Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324 + + H ++ L ++ ++ L + Sbjct: 297 SKIEAGKINLEHRPFHLAGMIEEITELLAPRAQARQIEIACYIDERLPLEVAGDAARLRQ 356 Query: 325 -TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382 ++ F G P + + + G ++ Sbjct: 357 VLLNLASNAVKFTSRGGVALIVEPG---IWPNEISFMVRDTGIGIAPDAQQRIFREFEQA 413 Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 + R A I +A+ +P E Q Sbjct: 414 DEHIARQYGGSGLGLAISERIVRRMGGRIALESVPGEGTTFEVSIPLQASDTSAIT 469 >gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina ATCC 23134] Length = 1055 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 100/412 (24%), Positives = 180/412 (43%), Gaps = 16/412 (3%) Query: 413 MTFIPFEKANQFPENM-PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471 + + E G + + + + + + +L + GI + Sbjct: 257 VWVRLVGQGEFEGEQCQRIYGTVQDINERKHQEEEAKKINTRLALATQTARVGIWEYDIV 316 Query: 472 GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 L+ + ++ +L+G ED + L + + + + Sbjct: 317 SNKLTWDDSMFELYGLKYEDFDGVYSAWVGLLHPDDVQRVEEEVAWAIEGKKEFDTAFRV 376 Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSD 587 + K + + S + DI+ K KL AKK A+ + KS+ Sbjct: 377 VWQDSSVKYIKALARVHNDSQGSALFMIGTNWDITHEKLASEKLKEAKKQADTANKAKSE 436 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FLA +SHEIRTPL +IGF+++++ + N +Y + I +S +LDI+ ++LD Sbjct: 437 FLANMSHEIRTPLNGVIGFADLLQRSKL----NETQQKYISTIYQSATSLLDIITNILDF 492 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706 SKIE+GK++L L + I+L++ A++K + + N+IPR + D ++Q Sbjct: 493 SKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAHKKDLEVLLHIDNDIPRFVWIDEVKMRQ 552 Query: 707 IALNILSNAIHFTPSGGQIIISTTHT---SNEEVILR--VRDTGVGMTNYELEKAMKPFG 761 + +N+LSNA FT G +I + E V+LR VRDTG+G+ K + F Sbjct: 553 VLVNLLSNATKFTTEG-EIELKIDLQERLDEEMVVLRFAVRDTGIGIAPENKGKIFEAFS 611 Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 Q +S R GTGLGL ++ ++D + + S +G++ P+ T Sbjct: 612 QEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVESITGRGSVFYFDIPVKAT 663 >gi|75763246|ref|ZP_00743002.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489267|gb|EAO52727.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 801 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351 + E + + + + T E ++ G++ AN ++ + Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ + + Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465 Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + +N + + N + FGY E++L F+ + Q++ ++ L +I Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T + + + L + DI+E + + L ++K+A Sbjct: 525 GQTSFTLQDEYVFPTGKVITAEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ N Y N + + Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I + + ++K + K+ + + + + + L+Q A I R IP I Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISLLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NIL NAI P GG+I+I N +V +R D G G+ + + Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGIPKERIPYLGE 750 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P+ Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367 + + +TV + F V H + F + S + + Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P L L + I + W + ++ + + + Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G + + + + ++ L S ++ D I I +REG IL N+A K+FG+ Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++I+ K + + +IL T+ + LL + + + Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DISE KQ + + + ++S K L Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459 Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 84/287 (29%), Gaps = 25/287 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G++ + ++ K G + ++IG RL V D L + +I +L ++ +T Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ L V + ++ PI I RL ++ Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453 Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253 + + + P R + ++ SL+ +D Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + ++S Q+++ T + +LS + Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITAEFSVRVFN--LNGKKVFLSISRDITERL 571 Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 +E + V + + N A F+ L K + Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTENE 617 >gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp. RQ2] Length = 412 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 83/413 (20%), Positives = 174/413 (42%), Gaps = 29/413 (7%) Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + P ++ + + ++E+ +IL + Sbjct: 21 RKRLSEYRIFIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSL 80 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ I I++REG I N +L + +P+ E +N + E + + Sbjct: 81 SEPIFILDREGKITFLNEIARELVQ-GRINPEGRPYYEIFEDYY---INEMVEETIKSEE 136 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 Q E+K +++I +L + + HD+++ ++ Sbjct: 137 PQEGTL-VTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDE----------- 184 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + +F+A VSHE+RTPLT+I G++E + + I+ + + Sbjct: 185 ---MRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +NDLLD+ K+E ++N + V L E V ++Q A E + + + + + + Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVV--VKGN 297 Query: 701 LRSVKQIALNILSNAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + Q+ LN++ NA+ +T G ++ + + + + V++ V+DTG G+ + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVR-AYDTPDWVVVEVKDTGPGIPKESQSRI 356 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F ++ ++ + GTGLGL + K +VD + GK + S +GT++ + P Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLP 409 >gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603] gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603] Length = 591 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 161/365 (44%), Gaps = 27/365 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 ++ E QL SIL + +DG+ +N+EG ++ N E+ V L + Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EVELSKKL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 PS + ++ + +Q +E + + L + + D++E + Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + + DF+A VSHE+RTP+ + G+SE I + E Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + I + +VN+LLD++++ESG + LH V + V + Q A +K + Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 + F + I + D ++Q+ N++ NAI T +GG + + ++ + V+D+G Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSG-LTFEVQDSG 522 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+ ++ F + ++ + GTGLGL +AK +V + GK ++ S +GT+ Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIF 582 Query: 805 EIIFP 809 + P Sbjct: 583 SVYLP 587 >gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris trichoides DG6] Length = 883 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 31/376 (8%) Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 R+ E E L ++L + DG+ + +R G I N A + G E +P + Sbjct: 539 ARQREEEASTLLAMLRSIGDGVVVSDRNGTIQIINPAAEAILGITAEAFRGRPISELPGV 598 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + + + E+ + +I + HD++ Sbjct: 599 PAQLSAADAESRLQKFAVA---ERTVRSHYAD--------VIASNGEILGGVVVYHDMTR 647 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 E K++ +A SHE+RTP+T+I GF +++ FG + Sbjct: 648 --------------EEIADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVS-ATQ 692 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E I + ++ ++++LLD+S++E+G+ L E + L E + + I+++ E+ Sbjct: 693 REPLRVIKNNVVRLVVLIDELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFRERE 752 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + F +P ++AD + ++QIA+N++ NA +TP GG + I H N E+ + VRD Sbjct: 753 IELHVDFQEGLPHVVADRQRIEQIAVNLIGNACKYTPRGGTVWIGM-HNGNGELRVDVRD 811 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TGVG++ PF + N + GTGLGL + + +V+ + G+ + S G+ Sbjct: 812 TGVGISEEAKSHIFTPFYRADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGST 871 Query: 804 IEIIFPLYDTSHPHDC 819 + P+ P D Sbjct: 872 FSFVLPI----KPEDA 883 Score = 38.5 bits (88), Expect = 4.5, Method: Composition-based stats. Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 19/240 (7%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D +G ++ I+ +G A G + ++ + L + Sbjct: 564 DRNGTIQIINPAAEAILGITAEAFRGRPISEL---------PGVPAQLSAADAESRLQKF 614 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209 + + + N E G G + H + L L SH Sbjct: 615 -----AVAERTVRSHYADVIASNGEILG--GVVVYHDMTREEIADRLKTELMATASHELR 667 Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269 + + + R +V + + E Sbjct: 668 TPMTSIRGFVDMLMLGTFGEVSATQREPLRVIKNNVVRLVVLIDELLDMSRVEAGEARLR 727 Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329 E+ D + + + + P + A E + + Sbjct: 728 REELDLAEVLRDVIA---VLTSQFREREIELHVDFQEGLPHVVADRQRIEQIAVNLIGNA 784 >gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463] Length = 619 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 85/408 (20%), Positives = 173/408 (42%), Gaps = 40/408 (9%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ + ++ + + E +L S+L SDG+ +R G + N Sbjct: 236 DELGQLAKAFNTLSVRIEQSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 293 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++I+ +P L S + E + + L Sbjct: 294 LSYLNADEDEIINRPIAEVLGLKDTSS---------QDLISSQKEIVVTVKPGTRDEIIL 344 Query: 542 RIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + + + +HD++E ++ + + + F++ VSHE+R Sbjct: 345 HASFSLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFISNVSHELR 390 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPLT++ + E + + + ++ + + ++ ++NDLL +S+++ G + Sbjct: 391 TPLTSLQAYIEALNEEAW--KDPEIAPKFLEVAQQETSRMIRMINDLLSLSRMDRGVSKM 448 Query: 658 HFEPVSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E V+L++ VS ++ + ++K+ I+ N + D + Q+ N Sbjct: 449 DLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDN 508 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I++NAI ++P GG I + TH+ VIL + D G+G+ +L K F ++ ++ Sbjct: 509 IMNNAIKYSPDGGVITVRLTHS-QGHVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRA 567 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 GTGLGL +AK +V+A+ G+ + S+ KG+ I P Y+T D Sbjct: 568 QGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP-YETMTEED 614 >gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039] gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039] Length = 611 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454 R I+ R + K + E + + + ME E +L Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+L +DG+ +R G +++ N L E+ + + L+ L Sbjct: 264 DSVLSHMTDGVIATDRRGKVVTINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT----LR 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572 ++L L++ T ++ +L + + + S +HD++E ++ + + Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690 + ++ ++NDLL++S++++G L E V+ +E V+ + + EK IR F Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D + Q+ NI++NAI ++P GG I ++ VIL + D G+G+ Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ GTGLGL +++ ++ A+ G + S KG+ I Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|262166423|ref|ZP_06034160.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus VM223] gi|262026139|gb|EEY44807.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus VM223] Length = 785 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 19/400 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G N Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G +++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L ++ +E V+E L L A +K + ++P + D ++Q+ N++SNA Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410 Query: 716 IHFTPSGGQI-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + ++ + V DTG+G+ E EK + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSAECDEQHADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810 GTG+GL +++ ++ G + S G+ + PL Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%) Query: 19 KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75 + Q+L++K N + + +E + + D E L + Sbjct: 98 RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157 Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 I + + +A G + + + G +++G+ DV Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + NT W +L +P YS++ G GFG Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247 ++ + + S+ L + + T Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334 Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 K D K E +P + E + E E + Q + L + E Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393 Query: 302 YLSHRNHPSLS 312 + R L Sbjct: 394 VDATRLRQVLW 404 >gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 761 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 113/426 (26%), Positives = 200/426 (46%), Gaps = 18/426 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 197 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 256 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R G I + N ++ GY ++I+ + F+VF Q + Sbjct: 257 IEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 314 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + K+ ++I S +S DIS+ + + L Sbjct: 315 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALG 374 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 375 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 429 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690 +G +L ++N++LDI++IE+G ++L EPVSL + EA+ LV A + I ++ + Sbjct: 430 AGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNL 489 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + I ++AD + + Q+ LN+LSNAI + GQ+ I T+ +V + V DTG G+ Sbjct: 490 PDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAE-QVTVSVVDTGYGIAP 547 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + KPF ++ EGTGLGL L+K+M++ G + +TP +G + P Sbjct: 548 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPF 605 Query: 811 YDTSHP 816 P Sbjct: 606 VRVQPP 611 Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D +GY+ + + G ++IG P+ + + + Sbjct: 265 IFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 323 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 + +G+ + + + A Y N E GF R + + + Sbjct: 324 TEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 381 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + + Sbjct: 382 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 441 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + ++L+ ++ + + E N P Sbjct: 442 ------LDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGV 495 Query: 315 FDEGENLTPETVDKCPIPF 333 + + L ++ Sbjct: 496 VADRQRLIQVLLNLLSNAI 514 >gi|308126506|ref|ZP_05910586.2| PAS domain protein [Vibrio parahaemolyticus AQ4037] gi|308108483|gb|EFO46023.1| PAS domain protein [Vibrio parahaemolyticus AQ4037] Length = 780 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 174/406 (42%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 119 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 178 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ S + T E+ + Sbjct: 179 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 238 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 239 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 291 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 292 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 347 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 348 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 407 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 408 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 467 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 468 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 513 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E E+ K + Q + Q + + + +A G Sbjct: 114 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 172 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + + G +++G+ DV P + + + L Sbjct: 173 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 232 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G +L +P YS++ G GFG ++ + + Sbjct: 233 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 288 Query: 213 GHSSV 217 Sbjct: 289 HELRT 293 >gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus subtilis subsp. spizizenii str. W23] Length = 611 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 23/374 (6%) Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496 + + E E +L S++ +DG+ NR G I+ N +L E L P Sbjct: 248 TRELEDAQAMTEGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307 Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556 T L + + S+ L + ++ +I ++ Sbjct: 308 ITSLLGIQENYTFEDLVEQQDSMLLEIERDDELTVLR-----VNFSVIQREHGKIDGLIA 362 Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616 ++D++E ++ + + +F+A VSHE+RTPLT + + E + + Sbjct: 363 VIYDVTEQEKMDQE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAW- 407 Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676 + ++ +VNDLL +SK +S + E + + +S I + Sbjct: 408 -ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFE 466 Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 E+ + + + + D + Q+ NI+SNA+ ++P GG + S EE Sbjct: 467 -MTKEQHVEFIRNLPDRNLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE 525 Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 ++ + V+D G+G+ ++EK F ++ ++ + GTGLGL +A+ MV A+ G + Sbjct: 526 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWAD 585 Query: 796 STPAKGTLIEIIFP 809 S KGT I P Sbjct: 586 SIEGKGTTITFTLP 599 >gi|262170675|ref|ZP_06038353.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus MB-451] gi|261891751|gb|EEY37737.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus MB-451] Length = 785 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 19/400 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G N Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G +++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L ++ +E V+E L L A +K + ++P + D ++Q+ N++SNA Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S ++ + V DTG+G+ E EK + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSAECDEQYADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810 GTG+GL +++ ++ G + S G+ + PL Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510 Score = 47.7 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%) Query: 19 KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75 + Q+L++K N + + +E + + D E L + Sbjct: 98 RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157 Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 I + + +A G + + + G +++G+ DV Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + NT W +L +P YS++ G GFG Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247 ++ + + S+ L + + T Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334 Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 K D K E +P + E + E E + Q + L + E Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393 Query: 302 YLSHRNHPSLS 312 + R L Sbjct: 394 VDATRLRQVLW 404 >gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum MS-1] Length = 1136 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 115/560 (20%), Positives = 236/560 (42%), Gaps = 29/560 (5%) Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY---FDEGENLTPETVDKCPIPFFVYS 337 + + ++ + L HR+ + + + + + + + Sbjct: 581 QGRPNQNLGKLIADDFRIDLRALVHRSRETSTVAMGSKRQLRTREGDVMSRLVVRPLHVE 640 Query: 338 HGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395 G S + +E + G L + + + + Sbjct: 641 SGRELLFLVSCEKIELISEGGAVEATTSPGNEIRLIELEQELTATREHLQTVVEELETSN 700 Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 + + N + + + + + + ++ ++ L Sbjct: 701 EELQALNEEMQAANEELQSSNEELETSNEELQSTNEELTTVNEELQVRTSELAAANADLQ 760 Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 +I + + ++++ I ++LFG D + T Q + + L Sbjct: 761 NIQDNVGFPMLVVDKGLRITRFTPQAARLFGLLPSDA-GQLITAVPSQFHVKDLRNLLVT 819 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKN---- 569 ++S L + + E ++ + I + ++ LT D ++ + + Sbjct: 820 VVSSGLS---HEEII--DAEGRIYRMGIFPYRDLREQTAGAILTFIDETDLRNTQKDLEA 874 Query: 570 ----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 +L AK IAE + KS+FLA +SHE+RTPL A++GF++++ ++ +G LG Sbjct: 875 SIDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELRTPLNAVLGFAQIMADEMWGSLG 934 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 N RY EY I SG +L ++ +LD+S IE+G+ L V++ + + ++ L+ A Sbjct: 935 NDRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTLRESNVNISDVIVTSMRLLSSQA 994 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 I + S +++P + DL ++++I LN+L NA+ FTP+GG + ++ +H + V + Sbjct: 995 ENSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALKFTPAGGAVTLTASHDQSG-VTI 1053 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTP 798 VRDTG+G++ ++L++ + PF Q + EG GLGLP+ K++++ + G I S Sbjct: 1054 CVRDTGIGISAHDLDRVLMPFEQGGQRILRKEREGVGLGLPITKSLMELHGGTLSIDSKE 1113 Query: 799 AKGTLIEIIFPLYDTSHPHD 818 KGT + FP + HD Sbjct: 1114 GKGTTACVHFPASRSLAAHD 1133 >gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp. m3-13] Length = 594 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 164/364 (45%), Gaps = 27/364 (7%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 + E L +IL + +DG+ +NR+G IL TN K ++ Sbjct: 249 ALNQEKEHLANILSSMADGVITLNRDGTILVTNPPAEKFLQAWYYQEGNAS-----GEDL 303 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565 P + +S++ Q++E G T + + + + D++E + Sbjct: 304 PGEVVEMFQRAVSVEKEQSIELTYQGRT----WVIVMSPLYTQTHIRGAVAVIRDMTEER 359 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + + DF+A VSHE+RTP++ + G+SE I + G + E Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGT--DEEKKE 403 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 A+ I + +VNDLLD++++E+G ++L++E ++ V + Q A EK I+ Sbjct: 404 LASVIYDESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIV 463 Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745 +++ + I D+ ++Q+ N++ NAI T G I I +N V + V+D+G Sbjct: 464 LQSRVEGD-GVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNG-VKIDVKDSG 521 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 G+ +L + F + ++ GTGLGL + K +++A+ G + S +GT Sbjct: 522 HGIPEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFS 581 Query: 806 IIFP 809 + P Sbjct: 582 MYIP 585 >gi|220923544|ref|YP_002498846.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] gi|219948151|gb|ACL58543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans ORS 2060] Length = 944 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 87/764 (11%), Positives = 211/764 (27%), Gaps = 64/764 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148 + ++ + +G+ +G R DV + D IG L Q TW Sbjct: 68 GPDLHFLY-NDAYAEILGDKHPSALGRRFRDVWPEIWGDVEPLIGAALAGQATWAENMPL 126 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 G + + P+ + G F + + + Sbjct: 127 TMNRRGHDEQTWFTFSYSPLRDEDGAVVGM--FCACTETTGRVVAEEALREAEARLRLAT 184 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 E + + + + ++ D T + Sbjct: 185 EAAEVGLWDVDLVRETLYWPARVKAMFGISPDVPVTIADFYAGLHPDDRERVTRAFAAAL 244 Query: 264 SEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 + ++ TI + + ++ + + +E Sbjct: 245 DPARRVVYDVEYRTIGKEDGVLRWVAAKGRGVFDDEGRCVRVVGTAIDVTARKRIEESLR 304 Query: 321 LTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376 + P + + + + + D++ A L + + Sbjct: 305 ASEAQFRALSQSIPNIVWAATPDGTVDWSNDQVQTYSGRPADELNGAAWLDIVHPDDRGR 364 Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436 + + + R A ++ + + + G + + Sbjct: 365 MIASWQEALRTRQ-----PYQAE-FRLRSAAGSYRWFLTRVRPIRDAEGVLIRWVGTDTD 418 Query: 437 DVDTRIN-----------KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 D + + ++ + + + D +A++ +GI + N A + Sbjct: 419 IDDQKRAMADLVRFNEALEARVAERTAERDRVWRNSRDLLAVVGADGIFRAVNPAWQSIL 478 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G+ +++ + F F+ + L + DL + ++ + Sbjct: 479 GHDPLEVVGRSFREFIWPEDADLTQQGLDAASARDLT---DFENRYRHQDGTPRWISWRT 535 Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAI 603 D++ K++ L+ A++ + V+H+ LT I Sbjct: 536 SV--EGDLVYAYGRDVTAEKEQARALAQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTII 593 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + ++ L R Y + + + + + LL ++ ++ L E + Sbjct: 594 RSSVDFLRR---PDLPEERRRRYLDAVSDTVDRAAKLTGQLLAFARRQA----LKPEVID 646 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 + + ++ RI + T + + DL + +N+ NA G Sbjct: 647 VSARLQAVAEMLDA-VTGARIRVVTQVPDRPCFVRTDLSQFETALVNMAVNARDAMNGEG 705 Query: 724 QIIISTTH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 + + + + DTG G+ + + +PF G Sbjct: 706 TLTLRLACGCALPAIRGHAGAPGPFAAVSLTDTGAGIPPDLIGRIFEPFFTTK----EVG 761 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815 GTGLGL + G + ST +GT+ + P +T Sbjct: 762 RGTGLGLSQVFGFAKQSGGDIDVHSTVGQGTIFTLYLPEVETDQ 805 Score = 73.9 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 42/376 (11%), Positives = 92/376 (24%), Gaps = 30/376 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142 W G + ++++ G A ++ G D+ D I + L+ + Sbjct: 321 VWAATPDGTVDWSNDQVQTYSGRPADELNGAAWLDIVHPD--DRGRMIASWQEALRTRQP 378 Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLD 201 + + L G+ Y PI R G A L + + Sbjct: 379 YQAEFRLRSAAGS--YRWFLTRVRPIRDAEGVLI--RWVGTDTDIDDQKRAMADLVRFNE 434 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------------SLTEYY 247 + + E V + D+ + R N S E+ Sbjct: 435 ALEARVAERTAERDRVWRNSRDLLAVVGADGIFRAVNPAWQSILGHDPLEVVGRSFREFI 494 Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307 +D L + S + + + + ++ Sbjct: 495 WPEDADLTQQGL-DAASARDLTDFENRYRHQDGTPRWISWRTSVEGDLVYAYGRDVTAEK 553 Query: 308 HPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365 + + E + ++ + NL S + + + + Sbjct: 554 EQARALAQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTIIRSSVDFLRRPDLPEERRRRY 613 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422 L + D + + + R I SARL + + + Sbjct: 614 LDAVSDTVDRAAKLTGQLLAFARRQALKPEVIDVSARLQAVAEMLDAVTGARIRVVTQVP 673 Query: 423 QFPENMPQNGIEPEDV 438 P + + + E Sbjct: 674 DRPCFVRTDLSQFETA 689 >gi|298242060|ref|ZP_06965867.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] gi|297555114|gb|EFH88978.1| multi-sensor signal transduction histidine kinase [Ktedonobacter racemifer DSM 44963] Length = 796 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 117/779 (15%), Positives = 255/779 (32%), Gaps = 91/779 (11%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLW 150 G + + G + IG + + H + + L + + + +T Sbjct: 30 EGIITSWNPAAVSLFGYTPQEAIGQSVLLIIPEELHAEEKEILATLRQGKRIEHFETVRQ 89 Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH---- 206 +GT + + L+ P+ RN G I L Sbjct: 90 RKDGT--RIEVSLSISPVKDRNGTIVGATK--IARDVSERRQAERAHLHLAALVESADTP 145 Query: 207 -LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 + + +G + S + +T + + Sbjct: 146 IIGKTSEGIITSWNRAAQHLYGYSAQEAVGQP-----ITLIFPVDRQDEFITIMERIRQG 200 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 E + + + + +++ + + + E + + Sbjct: 201 ERVELYETVRQRKDGTRVPVSVAVSPIYDHAGLLIGASDIAHDITERKRIEAQEQMLAQL 260 Query: 326 ----------------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369 V +P + + N + L + D E TL Sbjct: 261 SQVLASTLDYQETLTAVAHLAVP-RIADWCTIELVNAAGHLELAELAHIDPEQVRWARTL 319 Query: 370 LDA-PKLSDNNAIKPVMLYRSDRTCIA-------ASARLHTIQWNRENSLAMTFIPFEKA 421 + P D +L A + + + T Sbjct: 320 CERFPADPDAQRGVAQVLRSGHAELYPEITDDLLVEASRNEEELALARQIGFTSAMLVPL 379 Query: 422 NQFPENMPQNGIEPEDVDTRINK-----------------------RKMEIEVMQLCSIL 458 + + N R+++ Q IL Sbjct: 380 TARGKITGVLSLATTASGRHYNAFDLALAEEVGRRIGLALENARLYREVQQSRDQFDIIL 439 Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFL---EQNTPSVMNHYLT 514 + +DGI + +L N +++ G ++L +P + L L Sbjct: 440 QGVADGIIVYTPNNRVLYANEVAAQMSGVTLFHELLDQPDEILLTTSPLIDEQGHALSLE 499 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570 + + ++ + ++II + + S HDI+E + +++ Sbjct: 500 ALPHCRVLAGAQEAQATLRVQGTERWVQIISRPVRTQSGAVAMVISIWHDITERMRVEHR 559 Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 K +F++ SHE++TP+T++ GF+ V++ R + + + Y + Sbjct: 560 --------------KDEFISMASHELKTPVTSLKGFTHVLQR-RLTKREDEQGLSYLARM 604 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 D + + +++DLLDIS++++GK+ L E LDE ++E + VQ ++ I Sbjct: 605 DAQLDKLTRLISDLLDISRMQAGKLALRIEAFELDELLNEIVDNVQATTTSHQLRIE--- 661 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + +++ D + Q+ +N+L+NAI ++P III ++VI+ V+D G+G+ Sbjct: 662 GHTGAQVIGDPDRLGQVFINLLTNAIKYSPEAEHIIIH-RFHEGKQVIISVQDFGIGIDQ 720 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + F Q+ ++ G G+GL LA+ +V + G+ ++ S G+ + P Sbjct: 721 SHHDRIFERFYQV-GPEEKTYPGLGIGLYLAREIVSRHKGRIWVESRKGAGSAFFVALP 778 Score = 125 bits (313), Expect = 4e-26, Method: Composition-based stats. Identities = 54/389 (13%), Positives = 124/389 (31%), Gaps = 36/389 (9%) Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 E + + G + NP+ + L Y + I S LL P+ Sbjct: 8 EELGIYEAIIASSDDAIVSKTLEGIITSWNPAAVSLFGYTPQEAIGQ----SVLLIIPEE 63 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 + + R + + ++ ++ + I Sbjct: 64 LHAEEKEILATLRQGKRIEHFETVRQR---KDGTRIEVSLSISPVKDRNGTIVGATKIAR 120 Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + + R +R + L +++E+ I EGII S NRA L+GY ++ + + Sbjct: 121 DVSERRQAERA----HLHLAALVESADTPIIGKTSEGIITSWNRAAQHLYGYSAQEAVGQ 176 Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555 P T+ + + I + + T+ K+ + + + + + + Sbjct: 177 PITLIFPVDRQDEFITIMERIRQGERVELY--ETVRQRKDGTRVPVSVAVSPIYDHAGLL 234 Query: 556 L----TMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609 + HDI+E K+ + ++ + + L V+H A+ ++ Sbjct: 235 IGASDIAHDITERKRIEAQEQMLAQLSQVLASTLDYQETLTAVAH------LAVPRIADW 288 Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL-------LDISK-IESGKMNLHFEP 661 + G+ E A+ + +++ + SG L+ E Sbjct: 289 CTIELVNAAGHLELAELAHIDPEQVRWARTLCERFPADPDAQRGVAQVLRSGHAELYPEI 348 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSF 690 + + EA + A ++I ++ Sbjct: 349 TD--DLLVEASRNEEELALARQIGFTSAM 375 >gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15] gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980] gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15] gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980] Length = 611 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454 R I+ R + K + E + + + ME E +L Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+L +DG+ +R G +++ N L E+ + + L+ L Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDVKNEEAIGQSILTLLDIEEEYT----LR 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572 ++L L++ T ++ +L + + + S +HD++E ++ + + Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690 + ++ ++NDLL++S++++G L E V+ +E V+ + + EK IR F Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D + Q+ NI++NAI ++P GG I ++ VIL + D G+G+ Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ GTGLGL +++ ++ A+ G + S KG+ I Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502] gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6] gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecium D344SRF] gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071] gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636] gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679] gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317] gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502] gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6] gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus faecium D344SRF] gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071] gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636] gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679] gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317] Length = 611 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454 R I+ R + K + E + + + ME E +L Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+L +DG+ +R G +++ N L E+ + + L+ L Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT----LR 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572 ++L L++ T ++ +L + + + S +HD++E ++ + + Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690 + ++ ++NDLL++S++++G L E V+ +E V+ + + EK IR F Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D + Q+ NI++NAI ++P GG I ++ VIL + D G+G+ Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ GTGLGL +++ ++ A+ G + S KG+ I Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus cellulosilyticus DSM 2522] Length = 592 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 172/365 (47%), Gaps = 28/365 (7%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E++ +L ++++ G+ +IN +G I N+ +F + + K + ++ Sbjct: 243 EVQQDRLETLIDNMGSGLLLINSKGDITLVNKTCQSIFQENTDHWINKLYYQVIKHREVI 302 Query: 508 VMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564 + + + L + + I + L HDI+E Sbjct: 303 KFIQEILLTEKRIKKHLALPIGIEIRHFDVYGAPI-----IGSDLSLTGIVLVFHDITEL 357 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ + + DF+A VSHE++TP+T++ GF+E + + G + + + Sbjct: 358 KKLE--------------QARKDFVANVSHELKTPVTSLKGFTETLLS---GAVHDEQLR 400 Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 E + I + +++DLL++SKIE + L+++ V++D +S+ +++ A K Sbjct: 401 EKFLTIISNESERLESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKN 460 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I + I AD +KQ+ +NI++NAI +TP+ G++ + E VI+ V+D Sbjct: 461 IHFSKEVIGDT-VIEADAHRIKQVFINIINNAIMYTPNDGEVHVKV-IEKAETVIVEVQD 518 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G++ E+ + + F ++ ++ GTGLGL + K +++A+ + S +GT Sbjct: 519 TGIGISKKEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATMSVDSEVGQGTT 578 Query: 804 IEIIF 808 ++ F Sbjct: 579 FKMEF 583 >gi|218887627|ref|YP_002436948.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758581|gb|ACL09480.1| multi-sensor signal transduction histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 874 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 114/763 (14%), Positives = 240/763 (31%), Gaps = 88/763 (11%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +DA ++ + +G D +G Sbjct: 154 VDADALVRFANPAALAMLGR-------------GLPGVPDLPGLLGQ--PSPVPVRDDEL 198 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G N + +++ P+ + + + + + ++ + Sbjct: 199 DLCGDGDNPCL-VEVRTAPVTWDDAPAT----LVSLRDITAQRQAERALREAELRYRTIF 253 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----------TEK 258 E SV + + D + + + + + DDV + E Sbjct: 254 EHSLDGISVYEHRDDGSAPRLVDCNRGYERMAGRTRDNLRDMDDVRRLQVYLGGRKPPEP 313 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFD 316 + + + + + +++ Sbjct: 314 FRDDGGLRGPQSAVYSWLRPDGRENWIESVSVPVRDGDRVLVFGIGRDVSRRRKQEEALQ 373 Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + E + P+ F+ G+ N F +L + + + G S L+ + Sbjct: 374 QSEARFRAVFEHAPLGVFITDHDGSFVKTNRLFNVLHGFAAAEL--PLGHFSELVYGHEA 431 Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435 D A+ + + L + + + + G+ Sbjct: 432 GDVRALFAELHRGERNGFFLETRHLRS----DGTVFPVRLAVAAIRGRKADLQYAVGMLE 487 Query: 436 EDVDTRINKRKMEIEVMQLCS-------------------------ILEATSDGIAIINR 470 + + R + +++ +L + IL + S+G+ + + Sbjct: 488 DISERRAAEAELQGYRARLENMVLERTRDLEQALGTAESHREKIDLILRSVSEGLLVTDP 547 Query: 471 EGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529 + ++ TN A + G D++ + +E + + Sbjct: 548 DHRVVLTNPAAEDILGLAAPGDLVAEAVADLIEDAPLRKRLVHCLDDTMGGAPCQFGFSR 607 Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + +HD++ + + K++ Sbjct: 608 PTEAGGVHHYTASTSEVRDAGGGRTGVVTVLHDVTSER--------------ELDRMKNE 653 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FL +HE+RTPLT I+GFSE++ PL +Y YI+ LV IV DLLDI Sbjct: 654 FLTTAAHELRTPLTTILGFSELLVTGGDIPLV--EQRQYLGYINEQAALVSGIVADLLDI 711 Query: 648 SKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 S+IE G+ +L P L + ++ +R R + D V Q Sbjct: 712 SRIEMGQGFSLKRRPCDLVALIRRKVA--AHIVGTRRHSFRLLLPETPVPAVVDADKVAQ 769 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N+LSNA+ ++P GG + + + + VRD G+GM+ +L + + F + S Sbjct: 770 VLDNVLSNAVKYSPGGGVVEVRLRPGQDAH-EVSVRDNGMGMSPEQLSRMFEKFYRGDAS 828 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLG+ + K +++A+ G+ + S GT + P Sbjct: 829 NTG-IPGTGLGMSIVKHLIEAHGGEVAVESAKDVGTTVRFTLP 870 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 40/427 (9%), Positives = 111/427 (25%), Gaps = 28/427 (6%) Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230 R E + + ++ ++ + V + +P Sbjct: 107 RKGEVAEGLIVRTIRYAIDRKRAEGALRQHRQRLETIISANPDGMLVVDADA-LVRFANP 165 Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 + + + + + + P+ E + ++ + + Sbjct: 166 AALAMLGRGLPGVPDL---PGLLGQPSPVPVRDDELDLCGDGDNPCLVEVRTAPVTWDDA 222 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY---SHG---NLFYA 344 E E + VY G L Sbjct: 223 PA-----TLVSLRDITAQRQAERALREAELRYRTIFEHSLDGISVYEHRDDGSAPRLVDC 277 Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404 N + + D++ + L ++ P SA ++ Sbjct: 278 NRGYERMAGRTR-DNLRDMDDVRRL----QVYLGGRKPPEPFRDDGGLRGPQSAVYSWLR 332 Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464 + + + + + + GI + R + ++ + ++ E G Sbjct: 333 PDGRENWIESVS---VPVRDGDRVLVFGIGRDVSRRRKQEEALQQSEARFRAVFEHAPLG 389 Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 + I + +G + TNR + L G+ ++ F+ + + + E+ + Sbjct: 390 VFITDHDGSFVKTNRLFNVLHGFAAAELPLGHFSELVYGHEAGDVRALFAELHRGERNGF 449 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 T + + +R+ + + + DISE + + +L + E Sbjct: 450 F-LETRHLRSDGTVFPVRLAVAAIRGRKADLQYAVGMLEDISERRAAEAELQGYRARLEN 508 Query: 581 ESSHKSD 587 ++ Sbjct: 509 MVLERTR 515 Score = 44.6 bits (104), Expect = 0.077, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 13/200 (6%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTW 143 + D G + + G A ++ ++ + L R +N + Sbjct: 390 VFITDHDGSFVKTNRLFNVLHGFAAAELPLGHFSELVYGHEAGDVRALFAELHRGERNGF 449 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +T +GT P+ LA I R + G++ A + + Sbjct: 450 FLETRHLRSDGT--VFPVRLAVAAIRGRKADLQYA--VGMLEDISERRAAEAELQGYRAR 505 Query: 204 FSHLH-------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 ++ E G + +EK D+ + L + A +D + Sbjct: 506 LENMVLERTRDLEQALGTAESHREKIDLILRSVSEGLLVTDPDHRVVLTNPAAEDILGLA 565 Query: 257 EKYPLLTSEESSLPEQEDFH 276 L+ + L E Sbjct: 566 APGDLVAEAVADLIEDAPLR 585 >gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas fluorescens Pf-5] Length = 775 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 123/602 (20%), Positives = 236/602 (39%), Gaps = 30/602 (4%) Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-QEDFHTIN 279 + + ++ R+ + + + + + LLT E LP + I Sbjct: 38 STERQTARAEEDVRRVLLVQGDIQAVHTLLAEAAASVRGYLLTRREDFLPAYLQARPQIE 97 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 Q + R G TV + + Sbjct: 98 AALQRLDQNVQDPRMRDYLQTITPLIRTKLDGLVALRNGSRDDAATV----TAILIDNKQ 153 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLST-----LLDAPKLSDNNAIKPVMLYRSDRTCI 394 L + + E + + L + ++ I Sbjct: 154 VLDVLREQISAMRVREDALLAERSAAAAATRMRLLFATLLAAGCGLFGAIVAVLLLSRGI 213 Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 R+ +Q N + + + Q + +R + +L Sbjct: 214 V--TRVQQVQGNAQRLALGQPLRPQAPEQDEIGQLGTRLVEAGQLLAERERALRDNEERL 271 Query: 455 CSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 I++ D GI ++ G + + N ++ GY ++I+ + F++F Sbjct: 272 RLIIDGVKDYGIFALDTAGRVTTWNVGAERIKGYSEQEIIGRHFSLFYLPEECPQHPDM- 330 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKN 569 + + K+ ++I + +S DI++ + + Sbjct: 331 -ALREATAHGHYMEEAWRCRKDGSRFWASVVITAQYDASGALRGFSKITRDITDRRAAEI 389 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 L A++ AE S KS+FL+R+SHE+RTPL AI+GF++++ N + Sbjct: 390 ALGTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLL-----DMDSNAGQRPQVGH 444 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-- 687 I R+G +L ++N++LDI++IE+G++ L+ EP++L + EA++LV A + I + Sbjct: 445 ILRAGQHLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPL 504 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747 A + ++AD + + Q+ LN+LSNAI + +GG++ I ++ + L V DTG G Sbjct: 505 PELAADSG-VIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEAS-RLRLSVLDTGAG 562 Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 +T LE+ KPF ++ R EGTGLGL L++++++ G + STP G+ + Sbjct: 563 ITAERLERLFKPFERLDAD--PRVEGTGLGLALSRSLLEMMDGSLGVQSTPGSGSCFTLE 620 Query: 808 FP 809 P Sbjct: 621 LP 622 Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats. Identities = 26/310 (8%), Positives = 63/310 (20%), Gaps = 15/310 (4%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D G + + + G ++IG P+ + + + Sbjct: 283 IFALDTAGRVTTWNVGAERIKGYSEQEIIGRHFSLFYLPEECPQHPDMALREA-TAHGHY 341 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 + +G+ + + + A Y + GF I ++ Sbjct: 342 MEEAWRCRKDGSRFWASVVITAQ--YDASGALRGFSK--ITRDITDRRAAEIALGTAREE 397 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263 K S + + ++ L+ Sbjct: 398 AESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDSNAGQRPQVGHILRAGQHLLGLIN 457 Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EG 318 + +N+ P D + Sbjct: 458 EVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPLPELAADSGVIADR 517 Query: 319 ENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375 + L ++ G ++ A + L A L L + Sbjct: 518 QRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEASRLRLSVLDTGAGITAERLERLFKPFER 577 Query: 376 SDNNAIKPVM 385 D + Sbjct: 578 LDADPRVEGT 587 >gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5] Length = 594 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 101/500 (20%), Positives = 191/500 (38%), Gaps = 31/500 (6%) Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383 + P G + Y N + L D L D+ ++P Sbjct: 1 MLQALPDGVIAADATGRVTYVNAAAAALAGGALEDA-TGRPVCDVL--HMFDRDDRRVQP 57 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443 L R+ A S R + + + + + + + Sbjct: 58 TPLERALGGVHARSDRHWLHGADGSSRVPIVEAASPIVDAHGRLDGAVLLLRD-----AG 112 Query: 444 KRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + EV +L ++++A+ D I I+REG I+S N A ++FGY D +P + Sbjct: 113 TERASTEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVA 172 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558 + L + L ++ + + + + + + Sbjct: 173 MRWLR--RNPLADSFDTMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARSCVALSLTL 230 Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 D+ + + + A+ + K + LA VSHE+RTPL I G+ EV+ Sbjct: 231 RETGAQRRRDLRAQRSLQGARDA-RDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 289 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 +N R L ++ + IDRS + +V D+LD S + +GK+ + PV + S+ Sbjct: 290 RNTRDDAL----QLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSD 345 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 + Q A+ I++ A + + D ++Q+ N++SNA+ FTP GG + ++ + Sbjct: 346 TVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLS 405 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 + +L V DTG G+ + F + +S G GLGL + + + + G Sbjct: 406 -RDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 464 Query: 791 KFYIFST-PAKGTLIEIIFP 809 + + S +G + P Sbjct: 465 QVRVESAGRNRGATFTVTLP 484 Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 35/376 (9%), Positives = 88/376 (23%), Gaps = 20/376 (5%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWYG 145 DA G + ++ G G +CDV + D + L + Sbjct: 13 DATGRVTYVNAAAAALAGGALEDATGRPVCDVLHMFDRDDRRVQPTPLERALGGVHARSD 72 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRLD 201 + L +G++ VPI AA PI + G R G + + + Sbjct: 73 RHWLHGADGSS-RVPIVEAASPIVDAHGRLDGAVLLLRDAGTERASTEVSRLQRAVVDAS 131 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261 + + S IF R + ++ + Sbjct: 132 PDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNPLADSFDTMREA 191 Query: 262 LTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + E + + + TL+ + L + + Sbjct: 192 VGPLELLCVRRDGRRFRATVSAGPVRGDARSCVALSLTLRETGAQRRRDLRAQRSLQGAR 251 Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD--IEIAGGLSTLLD 371 + + + D+ + + ++ + + D ++ + Sbjct: 252 DARDRADTSNRLKDEL-LATVSHELRTPLNVIYGWIEVLRNTRDDALQLQAIDAIDRSAR 310 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + L + + + + +F Sbjct: 311 SLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASAC 370 Query: 432 GIEPEDVDTRINKRKM 447 + + R + Sbjct: 371 VVSGDAERLRQMLANL 386 Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 6/226 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID G + + + G G L + + + N + D G Sbjct: 138 IDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNP-LADSFDTMREAVGPLE 196 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + ++A P+ R + R R R + Sbjct: 197 LLCVRRDGRRFRATVSAGPVRGDAR-----SCVALSLTLRETGAQRRRDLRAQRSLQGAR 251 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + + + K ++ + S + + +DD L+ + + S Sbjct: 252 DARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALQLQAIDAIDRSARS 311 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + T K + + F + S+ Sbjct: 312 LTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 357 >gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans JJ] Length = 997 Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats. Identities = 121/697 (17%), Positives = 233/697 (33%), Gaps = 58/697 (8%) Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224 ALP+++ + G +V N + ++ L E + + Sbjct: 171 ALPVFAVYPVATAALGLLLVRRL-ARNQLVMRLSESESRYQSLFENSHAVMLLIDPEDGA 229 Query: 225 FSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279 +P R + + + + ++ ++ + Sbjct: 230 VVDANPSACAYYGWTREEIRQKRMRDINTLPPAAVRAAMVNARNRRVTTFSFRHRLADGR 289 Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339 + + L + + E E + V+ P FV + G Sbjct: 290 IREVEVNAGPIRLMGRELLYSVVIDVTDRLEAQRRLIESEKRFRQLVEHAPSGVFVQTGG 349 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 Y NP L + + + L + ++ A+ ++ +D A Sbjct: 350 LFAYVNPHARSLLDVDTPGALVGSPVLERI-----APEDRAMVRARMHETDVLHRAVPMI 404 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459 + + E + + + ++ ++ + ++ S+ Sbjct: 405 EENMLRMDGGAFLAEVAAVPVEWDGKE--GSLVFFHDITERKRDEERLRLSEARMQSLFA 462 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFG-----------------YPVEDILRKPFTVFLE 502 T A ++ +++ +L G E + + Sbjct: 463 VTQMEAAGLDE--LLVHAVEEARRLTGSLFGCMFVEDGADGRLSRVAEACDGQCLRHWPG 520 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRIIIKKLPFSSCYSL 556 + +E L+ L+ G E + + ++ Y Sbjct: 521 GPFERQVPEQWSEALTGRRPIVLDGGPGGQDGETLCVPIVSDKEVAAMLVVAGKRKPYDA 580 Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + I+ +++ L AK+ AE+ S KS+FLA +SHE+RTPL I G Sbjct: 581 SDIRITSLFMDAVWRMVARRRDAAALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQG 640 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++++ P EY S + ++ D+LD+S++ESGK+ L EP L Sbjct: 641 MTQLLAATSLTP----EQREYVRAALVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLA 696 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG- 723 + +S + E I T A +P IL D V+QI N++ NA+ FT +GG Sbjct: 697 DLLSAVAAAFMPACLEAGIDWGTEVAPGVPEILFGDEGRVRQILYNLVGNAVKFTKTGGV 756 Query: 724 QIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780 ++ + + V DTGVG+ ELE+ + F Q+ S R +G GLGL + Sbjct: 757 RLEVWAGPVDASGCGSLFFAVTDTGVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAI 816 Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 + ++D G + S +GT PL H Sbjct: 817 VRRLLDLMQGTISVESEVGRGTRCVCALPLIRPQPQH 853 Score = 52.7 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 42/367 (11%), Positives = 87/367 (23%), Gaps = 28/367 (7%) Query: 89 IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147 ID G + + + G ++ R+ D++ + P ++ +N Sbjct: 223 IDPEDGAVVDANPSACAYYGWTREEIRQKRMRDINT---LPPAAVRAAMVNARNRRVTTF 279 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 + +++ A PI RE + +V + + +K+F L Sbjct: 280 SFRHRLADGRIREVEVNAGPIRLMGRELL----YSVVIDVTDRLEAQRRLIESEKRFRQL 335 Query: 208 HEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPLLT 263 E V+ Y +S V S +D + Sbjct: 336 VEHAPSGVFVQTGGLFAYVNPHARSLLDVDTPGALVGSPVLERIAPEDRAMVRARMHETD 395 Query: 264 SEESSLPE-QEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGEN 320 ++P +E+ ++ + + ++ + E Sbjct: 396 VLHRAVPMIEENMLRMDGGAFLAEVAAVPVEWDGKEGSLVFFHDITERKRDEERLRLSEA 455 Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380 L +A LT + + D A Sbjct: 456 RMQSLF-AVTQMEAAGLDELLVHAVEEARRLTGS-----LFGCMFVEDGADGRLSRVAEA 509 Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440 L R QW S A+T + P + V Sbjct: 510 CDGQCLRHWPGGPFE---RQVPEQW----SEALTGRRPIVLDGGPGGQDGETLCVPIVSD 562 Query: 441 RINKRKM 447 + + Sbjct: 563 KEVAAML 569 >gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum] Length = 1072 Score = 327 bits (839), Expect = 5e-87, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 157/353 (44%), Gaps = 19/353 (5%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521 G+ +G I+ N A FGY D+ + + L E+ S Sbjct: 579 GVMFSTLKGTIIDANDAFLSTFGYSRSDLENGHVDWMMMTPPEYYEISARALQELKSKRW 638 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581 Q +EK + + + + + C + D+S ++Q + A + Sbjct: 639 CQPIEKAYFHRSGAKVPVLISAAMVDGTDEQCITFVF-DLSRYRQAEES-------AIQA 690 Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641 + KS F+A +SHE+RTP I+G +++I + + P + A I +S + ++ ++ Sbjct: 691 NKLKSQFIANISHELRTPCHGILGMTQIILDSK---ELTPSQRDNAETIKKSTDNLVSLI 747 Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA---NNIPRIL 698 +D+LD SKIESGKM L F L V + + +N K I + P + Sbjct: 748 DDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGREYPVPPVLF 807 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEK 755 D + +KQI N++SNA+ FT +G I IST + S +++ V+DTG+G+ + + Sbjct: 808 GDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTGIGIPHENASQ 867 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 PF Q+ S + G+GLGL + K +VD G S +G+ Sbjct: 868 LFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGSTFWFSL 920 >gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195] gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G] Length = 612 Score = 327 bits (839), Expect = 5e-87, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ E I ++ + E +L ++L +DG+ +R G I N Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ +P T L + + +++S + + Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +I + F S +HDI+E ++ +N+ + F++ VSHE+RTPLT Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++ + E + + G N ++ I ++ ++NDLL++S+++ G + + E Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447 Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717 V+L++ +S ++ + + IR F + + D + Q+ NI++NAI Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 ++P GG I I +++ VIL V D G+G+ +L + F ++ ++ + GTGLG Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L ++K +V+A+ GK + S+ G+ I P Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2] gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2] Length = 785 Score = 327 bits (839), Expect = 5e-87, Method: Composition-based stats. Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 25/521 (4%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 L + + +DK V G L YAN F+ ++ Sbjct: 145 VLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAEDGTLVYANKQFIEEYGVT--QEL 202 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L + + + + R +A A +E ++ + Sbjct: 203 GTQKIYD--LRVSMTNKEAWEQKLQVIRDHEGSLAYRAAYIPYGHTKERVHQVSTFLIRE 260 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478 NQ + D + ++ + L IL + + + + L N Sbjct: 261 NNQE----LTWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLFVKDPEDDLRYLYWN 316 Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 +A + G P + E+L R +++ L + E + Sbjct: 317 KAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDMQETYLSANGEAR 376 Query: 538 LLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + + DI+ + + +L A+ AE+ KS FLA +SHEI Sbjct: 377 IVQTLKALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEI 436 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL AI+GFS+++ Y+ I+++ +++L ++ND+LD+SKIE+G + Sbjct: 437 RTPLNAIVGFSQLL----PSAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLE 492 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 P++L E ++ + E + + + D + Q+ N L+NA Sbjct: 493 YIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNAS 551 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT G +I + + + + V+DTG+G+ +++ + F ++ + +GTGL Sbjct: 552 KFTYEG-EIRLGFGRMDKD-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGL 605 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 GL + + +++ G+ + S KG+ P Y+ + H Sbjct: 606 GLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP-YEETGEH 645 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 22/170 (12%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-----------------SILEATSDGIAIINREGI 473 + + + ++ E+ L IL++ D + + N+ + Sbjct: 8 EALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEV 67 Query: 474 -ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 I + + G +D + ++ + ++ T Sbjct: 68 GIEVVSNEETNHVGISNKDFRGMRMQDMVPPEAYQNIHSNMRHAITTGTVSTAHHEL--- 124 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + I L + DI+E + +L K + +K S Sbjct: 125 DFNGERHYYENRIFPL-DEEYVLIMCRDITERVATQRQLEVFKSVLDKVS 173 >gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 782 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 106/419 (25%), Positives = 197/419 (47%), Gaps = 18/419 (4%) Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 AR+H +Q N + + + + + +R + +L I Sbjct: 222 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLIEAGQLLAERERALRDNEERLRLI 281 Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516 +E D GI ++R+G + + N ++ GY ++I+ + F+VF + Sbjct: 282 IEGVKDYGIFALDRDGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM--AL 339 Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572 + + + K+ ++I S +S DIS+ + + LS Sbjct: 340 HEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALS 399 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 A++ AE+ S KS+FL+R+SHE+RTPL +I+GF++++ +I R Sbjct: 400 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 454 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA- 691 +G +L ++N++LDI++IE+G ++L+ EPV L + EA+ LV A + I + + Sbjct: 455 AGQHLLKLINEVLDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMATDASIEL-SELPQ 513 Query: 692 -NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + ++AD + + Q+ LN+LSNAI + G++ I ++ V + V DTG G+ Sbjct: 514 LPDELGVVADRQRLIQVLLNLLSNAIKYNRPDGKVRIEVGQSA-GRVTVSVVDTGYGIAP 572 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + + KPF ++ EGTGLGL L+K+M++ G + +T +G + P Sbjct: 573 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGGLSVDTTLNEGCRFTLELP 629 Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 23/265 (8%), Positives = 69/265 (26%), Gaps = 20/265 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143 + +D GY+ + + G ++IG P+ + + + Sbjct: 290 IFALDRDGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 348 Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194 ++ +G+ + + + A Y + E GF R + ++ + Sbjct: 349 TEESWRRRKDGSRFWASVVITAQ--YDSHDELRGFSKITRDISDRRVAEIALSTAREEAE 406 Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254 + + S + + + + SP + ++ + + Sbjct: 407 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 466 Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + + + + L+ ++ + S E P Sbjct: 467 ------LDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMATDASIELSELPQLPDELGV 520 Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339 + + L ++ Sbjct: 521 VADRQRLIQVLLNLLSNAIKYNRPD 545 >gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas maltophilia R551-3] Length = 662 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 94/514 (18%), Positives = 188/514 (36%), Gaps = 42/514 (8%) Query: 317 EGENLTPETVDKCPIPFFV----YSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLS 367 +L +++ F V + N +F T K +S Sbjct: 6 PEPDLHHGVLERINAGFCVIQVLFDGDRAVDYRFIEVNDAFERHTGLKDA----RGQRMS 61 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 L + + + + +F P Sbjct: 62 AL---EPHHEEDWFRIYGEVARSGRPAQFEMEARALGR--------SFAVDAVRVGRPGE 110 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + + + + ++ + ++ + + +++ G N A S+ FG Sbjct: 111 DKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGG 170 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 + + + + SV + L E L ++++ + + + L + + Sbjct: 171 DETRVPEDVWRGLVHPDDASVFEYELQEALK--AQRSMHALVRARRADGQWRWLEMNARP 228 Query: 548 LPFSSCYSLTMH----DISEWKQEK---NKLSHAKKIAEKES----SHKSDFLARVSHEI 596 + + D++E ++ + +L +++ A + K +FLA +SHE+ Sbjct: 229 RFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHEL 288 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPLT I+G+SE++ + + I S +++D+LD+S + GK+ Sbjct: 289 RTPLTTILGWSELLLQRVDNTSP---LYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQ 345 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 L E + L + EAI +L A K + + + +L D ++Q+ N+LSNAI Sbjct: 346 LEVEVLDLCGVLGEAIGAQELVAEGKALDVHLQLPDRPSLVLGDATRLQQVFWNLLSNAI 405 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FTP+ G+I ++ ++ VRDTG G+ L F Q + R G GL Sbjct: 406 KFTPAEGRIDVALQ-ADGNHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGL 464 Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809 GL + + +V+ + G S G + P Sbjct: 465 GLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 498 Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats. Identities = 36/374 (9%), Positives = 89/374 (23%), Gaps = 19/374 (5%) Query: 54 FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113 F D +SE F + W +D G+ + ++ + G ++ Sbjct: 117 FFDITARKQMEVELGESEARFSALADGLPMP-VWVLDERGHARFVNSAFSEFFGGDETRV 175 Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172 + + + LK Q + + +G + +++ A P +SR Sbjct: 176 PEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADG--QWRWLEMNARPRFSRM 233 Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231 F G G V R R + ++ E + Sbjct: 234 GRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLT 293 Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG- 290 L + + + L + + + + + Sbjct: 294 TILGWSELLLQRVDNTSPLYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDL 353 Query: 291 -TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGN 340 + + + E ++ + + +L + F+ G Sbjct: 354 CGVLGEAIGAQELVAEGKALDVHLQLPDRPSLVLGDATRLQQVFWNLLSNAIKFTPAEGR 413 Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400 + A + D G++ S R + + Sbjct: 414 IDVALQADGNHWVITVRD---TGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQ 470 Query: 401 HTIQWNRENSLAMT 414 ++ + A + Sbjct: 471 QLVELHGGTVTAAS 484 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 24/266 (9%), Positives = 64/266 (24%), Gaps = 21/266 (7%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 F + V + + +++ +V ++ + Sbjct: 26 QVLFDGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPHHEEDWFRIYGEVARSGRPA 85 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 E +L + + + K + + E E Sbjct: 86 QFEMEARALGRSFAVDAVRVGRP----------GEDKVGILFFDITARKQMEVELGESEA 135 Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 D P+P +V G+ + N +F + D+ Sbjct: 136 RFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGD------ETRVPEDVWRGLVHPDDA 189 Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439 ++ L + + + A L + + + ++ + G P+ + Sbjct: 190 SVFEYELQEALKAQRSMHA-LVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTE 248 Query: 440 TRI---NKRKMEIEVMQLCSILEATS 462 R + ++ S E + Sbjct: 249 RREIELAREELLQSERAARSAAENMA 274 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 19/236 (8%), Positives = 48/236 (20%), Gaps = 21/236 (8%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 E+++ + G + M + + G+ + + Sbjct: 38 RFIEVNDAFERHTGLKDARGQRMSALEPHHEEDWFRIYGEVAR--------SGRPAQFEM 89 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 E L + A+ + + G F + +FS L + Sbjct: 90 EARALGRSFAVDAVRVGRPGEDKVGILFF----DITARKQMEVELGESEARFSALADGLP 145 Query: 213 GHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 V E+ S R+ V + D + + + Sbjct: 146 MPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVH--PDDASVFEYELQEALKAQ 203 Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S+ + + + + + Sbjct: 204 RSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREEL 259 >gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction histidine kinase [Methanococcoides burtonii DSM 6242] Length = 396 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 106/398 (26%), Positives = 191/398 (47%), Gaps = 8/398 (2%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 ++F +N G + + + +E ++ SI + GI++++ +G I+ Sbjct: 3 DGDGDRFRDNEGFVGSVTHYLSKFVEMKLVENDLNIFKSISYKANYGISVLDMDGNIIYA 62 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N A S+L GY +++L F +F + + L ++LS D + + K+ Sbjct: 63 NEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCE--NEDVWHMRKDGS 120 Query: 538 LLS--LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593 + L + + + + D++ K+ ++ L A IA+ + KS+FLA VS Sbjct: 121 IFPAILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAANCSKSEFLANVS 180 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL +I+GFSE++ + R G L N Y + +GN + +I+N++L+ISKIE+G Sbjct: 181 HELRTPLNSIVGFSEILLDGRCGGL-NDVQRRYVQNVSNNGNHLSEIINEILEISKIEAG 239 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 K ++ E + +V E + + K I + I D K I ++L Sbjct: 240 KAEVNLEDFCILPSVMEVKESLMHSISLKNISFVCDVNPELHPIRLDKTKFKHILHHLLI 299 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NA+ FT G + I + S+ + + + D G+G+ +L F Q+ S + + G Sbjct: 300 NAVKFTSDHGSVGIHASAISD-MMHIVIFDDGIGIPREQLPHLYDKFYQVDGSTKRKYGG 358 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 TGLGL L K +V N G+ ++ S GT + ++ PL Sbjct: 359 TGLGLALTKKLVILNSGQMWVESEVNVGTKVHMMLPLA 396 Score = 47.7 bits (112), Expect = 0.009, Method: Composition-based stats. Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 5/138 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 +D G + +E + G A +++ + + + D L + + Sbjct: 53 LDMDGNIIYANEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCENEDV 112 Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 +G+ ++ + + F + V KR Sbjct: 113 WHMRKDGSIFPAILECNLILDGDNEPSYI----FVALRDLTVTKKAEDALKRAMSIADAA 168 Query: 208 HEIKKGHSSVEKEKYDIF 225 + K + + Sbjct: 169 NCSKSEFLANVSHELRTP 186 Score = 42.7 bits (99), Expect = 0.27, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 13/136 (9%) Query: 338 HGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKPVMLY 387 GN+ YAN +F L Y + + + L LLD SD + V Sbjct: 56 DGNIIYANEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCENEDVWHM 115 Query: 388 RSDRTCIAASARLHTIQWNRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445 R D + A + I + + + + + + + + + ++ Sbjct: 116 RKDGSIFPAILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAANCSKSEF 175 Query: 446 KMEIEVMQLCSILEAT 461 + +L + L + Sbjct: 176 -LANVSHELRTPLNSI 190 >gi|312886386|ref|ZP_07745996.1| PAS/PAC sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] gi|311301171|gb|EFQ78230.1| PAS/PAC sensor signal transduction histidine kinase [Mucilaginibacter paludis DSM 18603] Length = 867 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 112/758 (14%), Positives = 244/758 (32%), Gaps = 50/758 (6%) Query: 66 NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125 ++ F D TW++D + G ++ R D+ + Sbjct: 143 EEAETRTNFALDAAGMG---TWDLDLINNSVTCDNRCKELFGFPKDGLV--RYEDLLSHM 197 Query: 126 HIDPNNHIG-DLLKRQNTWYGK--TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182 H D + ++ N + + G L + + N + +R G Sbjct: 198 HPDDIARVDIAVMNAINPQVKENYDVTYRTVGYKLR-WVRCKGRAYFDDNNK--AYRFAG 254 Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242 V P + +K L E S+ + + + N + Sbjct: 255 TVIDIT----PEINTRDEQQKLLFLIENSSDFISLSTWDGKLTYLNTAGRQMMGFNNMED 310 Query: 243 LTEYY-----AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297 + + D + P + E H + +++ Sbjct: 311 ALQDAHHYLMPTEVDKINQVILPAMLKNGRWSGELLYRHAVTGQPIPGHVNTLLIKDPLT 370 Query: 298 ESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355 E + + + V+ V GN+ Y N + L Sbjct: 371 EEPLGRATVVRDLRNEIALKKEQQNLITVVENSADMIVVTDLEGNVTYINKAGQQLIGAD 430 Query: 356 SVDD-IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 ++++ + A G L + E A Sbjct: 431 NIEECYKKALGYFMPDATHLLGKEVRPNMLKNGAWAGEIQCRHF------KTGEAIPAWL 484 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 E + + + + ++ + I A+ + + + I Sbjct: 485 NAFTVNDPATGEPIGFASVTRDMRAEKAAQQALAQSEELFRKITIASPAALWMTDINSQI 544 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N GY + + L + + + + + LT + + Sbjct: 545 TYVNEVWINWTGYSLAEQLGAGWLKAVVEEDRTTAANKLTSDFERHKFHESQFRIKSTDG 604 Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592 + + + + + Y DI+E KQ + K DF+ Sbjct: 605 QLRYIICTGNPQYNTHGAFTGYIGACVDITELKQLQ--------------RQKDDFIGIA 650 Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 SHE++TP+T+I +++ + G+ + + ++ N + ++ DLLD++KI S Sbjct: 651 SHELKTPVTSIKAYTQ-LLESMMRKKGDLKEAGMISKMNVQINRLTMLIEDLLDVTKITS 709 Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712 G++ H + ++ + E + +Q + ++ + I +D V Q+ +N++ Sbjct: 710 GRLQFHQTWFNFNQMMQEVVEDLQRTTAKHTLIEDFNADTE---IYSDKDRVGQVLINLI 766 Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772 +NAI ++P +III T N EV + V+D G+G+ +++K + F ++ ++ Sbjct: 767 TNAIKYSPDSDEIIIRTAIE-NNEVQVSVQDFGIGIAQDKIDKVFEQFYRVSGDKEHTFP 825 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G GLGL ++ ++ GK ++ S KG+ P+ Sbjct: 826 GLGLGLYISSEIIKREGGKIWVDSVEGKGSKFCFSLPI 863 Score = 59.3 bits (142), Expect = 3e-06, Method: Composition-based stats. Identities = 28/248 (11%), Positives = 80/248 (32%), Gaps = 13/248 (5%) Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 P+ +V + N + L + + + L P+L K + Sbjct: 28 LPVGLYVGREMVISVVNDTILKIWGKD--ESVIGKTYREAL---PELEGQPFFKLLDDVY 82 Query: 389 SDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447 + A + + N E F + + D + ++++ Sbjct: 83 TTGIPYHAKEDVCYLMVNGELRRYYFNFAFKPLKTAEGKIWGILNTGTDVTDLVLMRKQL 142 Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTP 506 E + L+A G ++ ++ + +LFG+P + + + + + Sbjct: 143 EEAETRTNFALDAAGMGTWDLDLINNSVTCDNRCKELFGFPKDGLVRYEDLLSHMHPDDI 202 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS 562 + ++ + ++ +++ T KL +R + + ++ T+ DI+ Sbjct: 203 ARVDIAVMNAINPQVKE--NYDVTYRTVGYKLRWVRCKGRAYFDDNNKAYRFAGTVIDIT 260 Query: 563 EWKQEKNK 570 +++ Sbjct: 261 PEINTRDE 268 >gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500] Length = 1105 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 167/354 (47%), Gaps = 22/354 (6%) Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521 G+ +G+++ N A+ + GY +D+ + L + L E+ + Sbjct: 433 GVMFSTLKGLVMDANDALLSIIGYSRQDLEQGKVDWMLITPPEYFEISARALQELKAKRW 492 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580 Q +EK K K + + I + S +T D+S ++Q + A K Sbjct: 493 CQPIEKAYF--HKNGKKVPILITAAMVDGSDEQCITFVFDLSRYRQAEES-------AIK 543 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + KS F+A +SHE+RTP I+G ++++ + P + A I RS + ++++ Sbjct: 544 ATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTPN----QRDSAETIKRSIDGLINL 599 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF---ANNIPRI 697 +ND+LD SKIE+GK+ L L V E ++L AN+K I + + P + Sbjct: 600 INDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQSPVPPML 659 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV--ILRVRDTGVGMTNYELE 754 D R ++Q+ +N++ NA+ FT SG + IST + S ++V V+DTG+G+ + E Sbjct: 660 YGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIGIPDSVSE 719 Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 + +PF Q+ S + GTGLGL + + +V G S KG+ Sbjct: 720 QLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFWFSL 773 >gi|219851553|ref|YP_002465985.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] gi|219545812|gb|ACL16262.1| multi-sensor signal transduction histidine kinase [Methanosphaerula palustris E1-9c] Length = 1267 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 119/784 (15%), Positives = 233/784 (29%), Gaps = 87/784 (11%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D + + IG A +IG L + +P I R Sbjct: 507 VW--DPAFRITRFNHAFELLIGRKAADVIGQPLELLFPKKFAEPVLEIIRKTTRGERMEV 564 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREF---SGFRGFGIVHVNRVDNDPRALGKRLDK 202 + + + + I+ + E + +G I R + RL Sbjct: 565 VEIPILHQNGEIRT-VLWNSAAIFGSDGETVLSTIAQGQDITERKRTEEALHEAHLRLTH 623 Query: 203 KFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256 + + + + E +F R +++ Y D + + Sbjct: 624 HIENSPLAVVEFDAQFRVTRWSDEAEKVFGWTMAEVMGRTIDEI---PWVYEEDVDRVAS 680 Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316 ++ + + + T + Y L++ + E LS + + Sbjct: 681 ISADMMNGKAPRNKHTNRNYRKDGAVITCEWYNSALRDETGELVSILSQVLDVTERDRAE 740 Query: 317 EGE---------------------------------------NLTPETVDKCPIPFFVYS 337 + P V+ Sbjct: 741 ADLLEKNQELSELNEELTATQEELRQSIDELTTMEHELRETGQYLENLIQYANAPIIVWD 800 Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396 + N +F LL K+ D I L L ++ +++ Sbjct: 801 PAFRITRFNHAFELLIGRKAADVIGQP--LELLFPKKFAEPVLE----IIRKTNDGERME 854 Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 + + N E + + + + + Q Sbjct: 855 VVEIPILHQNGEVRTVLWNSAAIFGADGETVQSTIAQGQDITKRKWAEEALRQSEEQYRM 914 Query: 457 ILEATSDGIAI----INREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 + ++G I + + L N A + G + + L N Sbjct: 915 LFNTLTEGFCIIEMLFDADERPIDYRFLEINPAFERQTGL--HEAQGR-LMRDLAPNHEE 971 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567 I E + + P S ++ +DI+E KQ Sbjct: 972 HWFEIYGTIALTGEPVRFENEAKALN---RWYEVSAYRVGGPESRRVAILFNDITERKQA 1028 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L + + F SH+++ PL + FS++++ Q G L + E+ Sbjct: 1029 EEVLKTIADNLKASNQELEQFAYIASHDLKEPLRMVTCFSQILERQYKGQL-DADADEFI 1087 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 YI + ++NDLL S+I G + E V + A+ EAIS + + E+ I Sbjct: 1088 GYIVDGALRMEALINDLLLYSRINQGMRPV--ERVDMKHAIEEAISNLIIPIRERNARIT 1145 Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVRDTG 745 +P I DL + Q+ N++ NA+ + P +I I+ T V+D G Sbjct: 1146 R---GAMPSIQGDLSQMVQLFQNLIGNAMKYCPEEREPEIWINAERTGKGW-TFSVKDNG 1201 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ E+ F ++ + GTG+GL + K +V+ + G+ ++ S G+ Sbjct: 1202 LGIDPAYHEQIFMIFRRLH--TKAEYPGTGIGLAVVKRIVERHGGRIWVESEEGSGSTFL 1259 Query: 806 IIFP 809 P Sbjct: 1260 FTIP 1263 Score = 115 bits (287), Expect = 4e-23, Method: Composition-based stats. Identities = 61/582 (10%), Positives = 145/582 (24%), Gaps = 97/582 (16%) Query: 92 HGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149 G L ++ + G A ++ M ++ +D + +L + + Sbjct: 46 DGRLGIVNHAFEELTGYTADELQKMDWTATLTPPEWLDVERKNLEELHRTGKPVRYEKEY 105 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG------------ 197 +GT V I+L + + + F + R + Sbjct: 106 IKKDGT--RVAIELLVHLVTDKEGNPQYYYSF--ITDITEQKRNREILSLSNRVLHSAEE 161 Query: 198 -KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK------------------- 237 L + ++ + I +Q P+L Sbjct: 162 HHTLQPLLEEYIRTLQEYTGCDSIGVRILDEQGNIPYLAYAGFSRDFYEQENPLSVRTDH 221 Query: 238 ----NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED------------------- 274 N + T+ + T ++ ++E Sbjct: 222 CICINVIEGTTDPSLPFYTAGGSFMINATTKFRATESDEEKEKTRNTCTMVGYESVALIP 281 Query: 275 ---FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-----NHPSLSAYFDEGENLTPETV 326 I + G + E +++ + E + Sbjct: 282 IRKGDQIMGLLHLADHQEGMISAEKVRVLEQVAYALGASIVRVQTEEALRKQEKTAQAIL 341 Query: 327 DKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385 +++ + + ANP+ L+ K ++ + + I+ V+ Sbjct: 342 AAAKESIWLFGTDDTILMANPTALVRLGGKDTGEVIGHQYSEFMTSELAQARRARIEEVI 401 Query: 386 LYRSDRTCIAASARLHTIQW--------NRENSLAMTFIPFEKANQFPENMP-------- 429 R A I +S+A Q E + Sbjct: 402 SSRRSVQFEDIRAGTIFIHTFCPVFDEAGAVSSIAAFSRDITGIRQADEELLKKNEGLHI 461 Query: 430 --------QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 Q + + + ++ L ++++ + I + + I N A Sbjct: 462 LNEELTATQEELRQSIDELTTMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAF 521 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 L G D++ +P + + + + + + + +E L E + + Sbjct: 522 ELLIGRKAADVIGQPLELLFPKKFAEPVLEIIRKTTRGERMEVVEIPILHQNGEIRTVLW 581 Query: 542 RIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEK 580 T+ DI+E K+ + L A Sbjct: 582 NSAAIFGSDGETVLSTIAQGQDITERKRTEEALHEAHLRLTH 623 Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 35/365 (9%), Positives = 108/365 (29%), Gaps = 29/365 (7%) Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309 + + E+ N + + Q ++S + L Sbjct: 427 DEAGAVSSIAAFSRDITGIRQADEELLKKNEGLHILNEELTATQEELRQSIDEL-----T 481 Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 ++ E + P V+ + N +F LL K+ D I L Sbjct: 482 TMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAFELLIGRKAADVIGQP--LEL 539 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 L ++ ++ R + + N E + + + Sbjct: 540 LFPKKFAEPVLE----IIRKTTRGERMEVVEIPILHQNGEIRTVLWNSAAIFGSDGETVL 595 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + + + + + ++L +E + + + + + + K+FG+ Sbjct: 596 STIAQGQDITERKRTEEALHEAHLRLTHHIENSPLAVVEFDAQFRVTRWSDEAEKVFGWT 655 Query: 489 VEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546 + +++ + ++ + + ++++ + + K+ +++ Sbjct: 656 MAEVMGRTIDEIPWVYEEDVDRVASISADMMNGKAPRN-KHTNRNYRKDGAVITCEWYNS 714 Query: 547 KLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS----------DFLARV 592 L + +++ D++E + + L + + + + D L + Sbjct: 715 ALRDETGELVSILSQVLDVTERDRAEADLLEKNQELSELNEELTATQEELRQSIDELTTM 774 Query: 593 SHEIR 597 HE+R Sbjct: 775 EHELR 779 Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 444 KRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TV 499 +R + + + L IL+ +S + +G + N A +L GY +++ + + Sbjct: 16 ERALLESLERNTFLSDILDRSSQPFGVGYLDGRLGIVNHAFEELTGYTADELQKMDWTAT 75 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLT 557 V L E+ EK + + L + + + Y Sbjct: 76 LTPPEWLDVERKNLEELHRTGKPVRYEKEYIKKDGTRVAIELLVHLVTDKEGNPQYYYSF 135 Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS 583 + DI+E K+ + LS + ++ Sbjct: 136 ITDITEQKRNREILSLSNRVLHSAEE 161 >gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio magneticus RS-1] Length = 1516 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 105/632 (16%), Positives = 223/632 (35%), Gaps = 33/632 (5%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252 + L + + + L + G ++ + F+ + + V ++ A++ Sbjct: 749 KELRELNEDHDNLLRSTEVGTLFLDDKLCIRKFNPAITKSFKLLPHDVGRPVDHIAYQFS 808 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN--HPS 310 L + + + + Q +++S L+ + Sbjct: 809 GQAEMLQDLRDVLSTGNMIEREIQANDEE--WLLQRVLPFKSDSGIKGVVLTFTDISKIK 866 Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGG 365 L E P F Y+ + + L + ++ A Sbjct: 867 AFELERNKAKLLKELASSVPGMVFQYASSPVGTSGFTFISDGASSLLGSELASELITASR 926 Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425 +S + + + + + + H ++ +N + K Sbjct: 927 MSCM-----VYEADLVNFDQALIEATNSNSILDCEHRVKSEGDNEKWLHTRCTPKTLHDG 981 Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485 NG+ + + +I ++ +IL I + N Sbjct: 982 TVF-WNGVSVDITERKIAAAQVSKAAEFYLTILNRAPALIWRAGLDAKCDWFNATWLSFT 1040 Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 G + L + + + Q E + + + Sbjct: 1041 GRDISQELGDGWADGVHPEDLQHCLDTYKKSFIAR--QFFEMEYRMRRHDGEYRWIVDFG 1098 Query: 546 KKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 Y +DI++ +Q L A+ AE+ + KS+FLA +SHEIRTPL Sbjct: 1099 CPFKNINGEFGGYIGFCYDITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLN 1158 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 ++G +++++ + EY+ S + +++D+LD+S++E+GK+ + P Sbjct: 1159 GVLGMLQLLQSTSL----DVEQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVP 1214 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720 L E V+ L + A E I + +IP R++ D ++Q+ N++ NA+ FT Sbjct: 1215 FDLSETVNVVNELFKTQAIESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTH 1274 Query: 721 SGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 +G +I +S+ + + ++ + DTG+G+ + +++ PF Q+ R +G G Sbjct: 1275 AG-KIAVSSHLLPSSDPKRISLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAG 1333 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807 LGL + K +V G I S +GT + Sbjct: 1334 LGLSICKHLVTLMGGNISISSVLGQGTTVNFS 1365 Score = 60.0 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 64/471 (13%), Positives = 120/471 (25%), Gaps = 60/471 (12%) Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI----EGTNLYVPIDLAALPI 168 + G DV D++ D +G L R + + + +G + V + + L Sbjct: 578 IAGRAERDVIDMVEGDLKLALGAALHRAASENTRIVFKHVKIAMQGGHELVDLAVECL-- 635 Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228 D + + F I EK + Sbjct: 636 ----------------------TDDKLTQRHYHVTFLPPSSITVSAIENEKCGTETAFLP 673 Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288 + R+ L + L+ L T+ E E+ N + + Sbjct: 674 TDEVWRRIAELEGDLQ----TTRENLQATIEELQTTNEELQATNEEMLAANEELQSTNEE 729 Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348 ++ +N D L V F+ + NP+ Sbjct: 730 LHSVNEELYTVNAEFEKKNKELRELNEDHDNLLRSTEVGTL----FLDDKLCIRKFNPAI 785 Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408 K D ++ + + + IQ N E Sbjct: 786 TKSFKLLPHDVGRPVDHIAYQFSGQAEMLQDLRDVLS---------TGNMIEREIQANDE 836 Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI- 467 L +PF+ + + +I ++E +L L ++ G+ Sbjct: 837 EWLLQRVLPFKSDSG---IKGVVLTFTDIS--KIKAFELERNKAKLLKELASSVPGMVFQ 891 Query: 468 -----INREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520 + G + S L G E I + + + + L E + + Sbjct: 892 YASSPVGTSG-FTFISDGASSLLGSELASELITASRMSCMVYEADLVNFDQALIEATNSN 950 Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNK 570 E EK L R K L + + DI+E K + Sbjct: 951 SILDCEHRVKSEGDNEKWLHTRCTPKTLHDGTVFWNGVSVDITERKIAAAQ 1001 Score = 48.5 bits (114), Expect = 0.005, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 35/153 (22%), Gaps = 5/153 (3%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNH 132 F + R W + G + +G D + + Sbjct: 1008 FYLTILNRAPALIWRAGLDAKCDWFNATWLSFTGRDISQELGDGWADGVHPEDLQHCLDT 1067 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192 + + + + +G Y I P + N EF G+ GF + Sbjct: 1068 YKKSFIARQFFEMEYRMRRHDGE--YRWIVDFGCPFKNINGEFGGYIGF--CYDITDRRQ 1123 Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 + + K + + Sbjct: 1124 ATLDLELARFNAEEANRTKSEFLANMSHEIRTP 1156 >gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1] Length = 849 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 123/604 (20%), Positives = 231/604 (38%), Gaps = 57/604 (9%) Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293 ++ K++ + +L+ ++ L + E ++ + I + K + Sbjct: 2 DIEQKLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQRAVVKTALSEAE 61 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF---- 348 ++ +LS E +++D F V+ G L AN ++ Sbjct: 62 KLKGQNSRFLSEL--ERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHF 119 Query: 349 --LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 L + ++ D+ L+D ++ + ++ + R T QW Sbjct: 120 EGLEVRPGMALADLLQLATTHGLIDLRGEPADHWRQRMIRRWDEDPVEPEIVRRCTGQW- 178 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466 N+ + + + + +L + ++A DG Sbjct: 179 -----------LRLVNRRARDGDMVSLLIDITEQM-----------RLRAAIDAIPDGFV 216 Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517 + +R ++ N ++ G P E+ILR +L + L Sbjct: 217 LFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRL 276 Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577 + + + L + I+ DI+E K+++ L A+ Sbjct: 277 AAFRHLGGAAE--QQLDDGRWLRV---IEHETPDGGRVGLGVDITELKRQQAALESARAA 331 Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AE S KS FLA +SHEIRTP+ I+G ++++ ++ I SG + Sbjct: 332 AEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEAL 387 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696 L I+ND+LD SKIE+ ++ LH EP L+ + E L+Q A K I + F +P R Sbjct: 388 LVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTR 447 Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYEL 753 + D ++Q+ N++ NA+ FT +G +I ++ + V DTG+G+ L Sbjct: 448 FVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHL 507 Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811 + F QI R EGTGLGL + + +++ G ++ S P +G+ + P Sbjct: 508 DHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAA 567 Query: 812 DTSH 815 D Sbjct: 568 DDEA 571 >gi|257093802|ref|YP_003167443.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046326|gb|ACV35514.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 835 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 116/564 (20%), Positives = 197/564 (34%), Gaps = 26/564 (4%) Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 S+ T + R + +GE + Sbjct: 147 GSARGLLPQSPVAEAEAMTLALIAQISSLAVVAMAAKIVVRARAAARESLRQGEKRLQQI 206 Query: 326 VDKCPIPFFVYSH----GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 VD P + + N F D I + L + Sbjct: 207 VDGLPASIAYADYTGSVARYSFVNRRFAERFGKAPAD-IAGRAVVDVL----GEEVYRDV 261 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 P + + + + + +D + + Sbjct: 262 APHLQRVLQGEAVEYD---RALPTADGTTRYDRVYLVPDWAEDGAVQGAYIFGIDDSERK 318 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL---RKPFT 498 +E +L G + E L+ + V ++ G+ R + Sbjct: 319 RALLALEGSEAKLAEAQAMAHVGNWEFDLETDRLTWSDEVYRICGHEPRSFTPFFRTDYV 378 Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---S 555 + L ++L+ Q LE + +E+ + +R + + + Sbjct: 379 AATPVEDRPKLAEALAQVLATGAAQRLEHRVVRPDGDERTVEVRAQVLCTDLAGRISTLT 438 Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615 + D+SE KQ + +L AK+ AE S KS FLA +SHEIRTP+ +IG + Sbjct: 439 GVVQDVSERKQIERELIAAKEAAEAASKAKSAFLANMSHEIRTPMNGVIG----VAELLL 494 Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675 R YA I RSG +L +++D+LD+SKIE+G++ L L E V E L Sbjct: 495 TEALEERARHYAETIQRSGRALLGVLDDVLDLSKIEAGRLELESVRFDLPELVREMSDLF 554 Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734 A K + S A +P + DL ++Q+ LN++SNA+ F+ G I I H + Sbjct: 555 GEAARAKGARLVVSVAPAVPRWVEGDLVRLRQVLLNLVSNAVKFSARG-IIEIELRHDGD 613 Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792 + + VRD G+G+ + + F Q R GTGLGL +A+ +V Sbjct: 614 GDGALRFAVRDQGLGIAPDKQARIFDAFAQADQGTTRRFGGTGLGLSIARQLVRLMGSDI 673 Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816 + ST +G+ L + + P Sbjct: 674 GLHSTLGEGSCFWFCLRLPEVAPP 697 Score = 57.7 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 28/238 (11%), Positives = 70/238 (29%), Gaps = 20/238 (8%) Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152 ++ + G + G + DV + ++ D H+ +L+ + Y + Sbjct: 225 RYSFVNRRFAERFGKAPADIAGRAVVDVLGEEVYRDVAPHLQRVLQGEAVEYDRALP-TA 283 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +GT Y + L +P ++ + G FGI D++ + L+ + L E + Sbjct: 284 DGTTRYDRVYL--VPDWAEDGAVQGAYIFGI-----DDSERKRALLALEGSEAKLAEAQA 336 Query: 213 GHSSVEKE----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 E +++ P + +D E + Sbjct: 337 MAHVGNWEFDLETDRLTWSDEVYRICGHEPRSFTPFFRTDYVAATPVEDRPKLAEALAQV 396 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEGE 319 + ++ + + ++ T + L + + S + Sbjct: 397 LATGAAQRLEHRVVRPDGDERTVEVRAQVLCTDLAGRISTLTGVVQDVSERKQIEREL 454 >gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330] gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12] gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1] gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330] gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733] gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12] gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1] Length = 611 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454 R I+ R + K + E + + + ME E +L Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+L +DG+ +R G +++ N L E+ + + L+ L Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDVKNEEAIGQSILTLLDIEEEYT----LR 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572 ++L L++ T ++ +L + + + S +HD++E ++ + + Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690 + ++ ++NDLL++S++++G L E V+ +E V+ + + EK IR F Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D + Q+ NI++NAI ++P GG I ++ VIL + D G+G+ Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ GTGLGL +++ ++ A+ G + S KG+ I Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|257062146|ref|YP_003140034.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] gi|256592312|gb|ACV03199.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp. PCC 8802] Length = 1166 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 103/667 (15%), Positives = 211/667 (31%), Gaps = 58/667 (8%) Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241 R + + K L + SV E+ + + + + Sbjct: 510 RNERSRQQAEKEREVSENKLKALLKYSSDIVSVFDEQGQLIYTSPAVEKIYGFSPEELQN 569 Query: 242 SLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299 T H DD + LL ++++ + T N + N Sbjct: 570 KNTFELIHPDDRSEVRNAFCQLLEDPKNTIRVHYRYQTKNQRFIWIETVASNQLQNPNIQ 629 Query: 300 FEYLSHRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFL 349 ++ R+ E + + F++ Y +P++ Sbjct: 630 GIVVNSRDISHRKESEEALRVSEERFRQLAENIREVFWMIDVSTVNPTEQRTLYVSPAYQ 689 Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNR 407 + +K + E + + + D+ I + I Sbjct: 690 QVWGHKPEELYENP--------RQWIQAVHPDDFERISHEFFDKLLITGFDHEYRIIRPD 741 Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME------------------I 449 + F NQ E G+ + + + ++ Sbjct: 742 GTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQTEEEIRGLNAALAEQNRQLEQRVAQ 801 Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPS 507 +L +L D + ++ R+ + N+ ++ G+ ++ K + Sbjct: 802 RTAELEMLLNTLPDFVFVVERDTMKLSFCNQMFAQGIGFTNRSEVEGKTIFECFPTEMAN 861 Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWK 565 ++ + +E+ + + + + P Y T D++E Sbjct: 862 YFAQQNEQVFNSGEILHVEEKVCLPNGD-RYFDTYKVPLRTPQGEIYALLGTGRDMTELV 920 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG--PLGNPRY 623 K L E + F VSH++R PL I GF +K Q +P+ Sbjct: 921 NTKKVLMQRTTQLELANQELDSFCYSVSHDLRAPLRHIHGFVNALKQQLMTNNTFEDPKV 980 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 + Y + I+ S + +++ LL +S++ G+ L V L+ V AI+L+ K Sbjct: 981 LHYLDVIENSSQKMAHLIDGLLTLSRV--GRRELVLHTVDLNAVVKTAINLLSPL-ENKT 1037 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 I+ +P + D ++Q+ N+L NA+ F+ I I + + V D Sbjct: 1038 HTIKFEV-GKLPTVQGDNALLQQVFTNLLDNALKFSRDRNPISIKINTLEDG--TIFVSD 1094 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 GVG ++ F ++ + GTG+GL + + ++ + G + S KGT Sbjct: 1095 NGVGFDMEYADQLFGAFQRLHSQAT--FPGTGIGLSIVQRIIHRHGGHIWAESQVDKGTT 1152 Query: 804 IEIIFPL 810 PL Sbjct: 1153 FYFTLPL 1159 Score = 86.2 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 34/293 (11%), Positives = 80/293 (27%), Gaps = 19/293 (6%) Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364 +E ++ P FF + + Y S + Sbjct: 62 ITLQQDQKFLLEEKREELQTILEILPDLFFRMNSDSTILDYRGESKSELYVSPELFLGKP 121 Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424 + L P+ + + + + N E +PF Sbjct: 122 MIEIL---PEPVAQAWRDAI--AQILGSNTLVTLEYQLSTSNAEQYYEARLVPFAHQ--- 173 Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE----GIILSTNRA 480 I + + ++ L +I+ + + + + G +L N+A Sbjct: 174 ----QIIAIVRNISQQKQTEINLKKSQDFLQTIINYLPVALFVKDGKPEKFGQLLLVNKA 229 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 ++ G ++ K + + E + + + + + + S K + Sbjct: 230 CEEMMGLVSSQVVGKTGHDLFPADQANFYEQKDREAFANGVPEDIPEEPIDSYNAGKKIL 289 Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 I + + DI+ K+ + L + I S +S F+A Sbjct: 290 HTIKVPLYDQNNDPEYLVCISEDITRQKKAEIDLEKSHNILRTISLAQSQFIA 342 Score = 68.5 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 36/404 (8%), Positives = 89/404 (22%), Gaps = 51/404 (12%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148 D G L S + K G ++ ++ LL+ + Sbjct: 544 DEQGQLIYTSPAVEKIYGFSPEELQNKNTFELIHPDDRSEVRNAFCQLLE--DPKNTIRV 601 Query: 149 LWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206 + + N + I+ A + +G + + + +++F Sbjct: 602 HYRYQTKNQRFIWIETVASNQL----QNPNIQGIVVNSRDISHRKESEEALRVSEERFRQ 657 Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266 L E + + ++Q +V +++ + E Sbjct: 658 LAENIREVFWMIDVSTVNPTEQRTLYVSPAYQQVWGHKPEELYENPRQWIQAVHPDDFER 717 Query: 267 -----------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----- 310 + + + + ++N E + Sbjct: 718 ISHEFFDKLLITGFDHEYRIIRPDGTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQT 777 Query: 311 -----------------LSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLL 351 L + ++ P FV L + N F Sbjct: 778 EEEIRGLNAALAEQNRQLEQRVAQRTAELEMLLNTLPDFVFVVERDTMKLSFCNQMFAQG 837 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411 + + ++E + V + ++ N + Sbjct: 838 IGFTNRSEVEGKTIFECFPTEMANYFAQQNEQVFNS---GEILHVEEKVC--LPNGDRYF 892 Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455 +P E G + + K+ + QL Sbjct: 893 DTYKVPLRTP--QGEIYALLGTGRDMTELVNTKKVLMQRTTQLE 934 >gi|196031997|ref|ZP_03099411.1| sporulation kinase [Bacillus cereus W] gi|228946726|ref|ZP_04109033.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195994748|gb|EDX58702.1| sporulation kinase [Bacillus cereus W] gi|228812943|gb|EEM59257.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 801 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 103/533 (19%), Positives = 209/533 (39%), Gaps = 47/533 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351 + E + + + + T E ++ G + AN ++ + Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKI 353 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ N + Sbjct: 354 FGWSSQEVIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRNDGSL 405 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465 Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + ++ N + N + FGY E++L F+ + Q++ ++ L +I Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T + + + L + DI+E + + L ++K+A Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ N Y N + + Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I + + ++K + K+ + + + + + L+Q A I R IP I Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 690 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NIL NAI P GG+I+I N +V +R D G G+ + + Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P++ Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLPIF 797 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367 + +TV + F V H + F + S + + Sbjct: 186 RELKRSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P L L + I + W + ++ + + + Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G + + + + ++ L S ++ D I I +REG IL N+A K+FG+ Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKIFGW 356 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++++ K + + +IL T+ + LL + + + Sbjct: 357 SSQEVIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRNDGSLLDVSLTVSP 414 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DISE KQ + + + ++S K L Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459 Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 23/286 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D GY+ + ++ K G + ++IG RL V D L + +I +L ++ +T Sbjct: 338 DREGYILQANKAYEKIFGWSSQEVIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ L V + ++ PI I RL ++ Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253 + + + R + ++ SL+ +D Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + ++S Q+++ T + +LS + Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571 Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358 +E + + + + N A F+ L K + Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617 >gi|327192798|gb|EGE59726.1| putative two-component sensor histidine kinase protein [Rhizobium etli CNPAF512] Length = 861 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 139/723 (19%), Positives = 261/723 (36%), Gaps = 41/723 (5%) Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166 GN +++G + + L R + K +G D+ Sbjct: 149 GNARPELLGQLPAETGAPQDGEFLAFGLWLKSRSASDLEKAIDRLRDGAQ---SFDMVVE 205 Query: 167 PIYSR----NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222 I SG R F V N+ RA L + L ++ Sbjct: 206 TIRDEILEAQGRVSGGRAF--VRFV-ALNNLRAELAELRIERDRLMTSISAFQTMLDAID 262 Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQED 274 Q+ P L N+ + + + + P + Sbjct: 263 MPAWQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTVARERIRATTTPESPFHDT 322 Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334 T+ T + + + ++ A D ET+D P Sbjct: 323 ISTVVHGNRTFFDVVDVTL-PGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVA 381 Query: 335 VYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393 ++ L + N +F+ L + + +E S LL+ + + + Sbjct: 382 IFDGERRLQFYNQAFVALWEL-DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWK---- 436 Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453 A L + S + +P + + G + + +E Sbjct: 437 ---EAALSVYRALDTQS-DLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNT 492 Query: 454 LCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 L + ++ S+G+A+ +G I +N A L+G + L + Sbjct: 493 LVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSY 552 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQ 566 + +L + + +L S L + LP + LT ++++ + Sbjct: 553 DRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVR 611 Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626 + L+ + K K+DF+ VS+E+R+PLT IIGF+++++ Q GPL N R EY Sbjct: 612 AERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEY 670 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 ++I S +++L +VND+LD++ +++G M L++ + L++ + + + E + + Sbjct: 671 IDHISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVAL 730 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 + + I+AD + +KQI L +LSNA +F+P G I + + V VRD G Sbjct: 731 EITAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGSSISLECRREGTDFV-FSVRDRGP 789 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G++ + F S + G GLGL + + V + G I S P KGT + Sbjct: 790 GISPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVC 847 Query: 807 IFP 809 P Sbjct: 848 RIP 850 Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 38/375 (10%), Positives = 89/375 (23%), Gaps = 16/375 (4%) Query: 87 WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 W D G L +++ + + I ++ + + + Sbjct: 266 WQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTV-----ARERIRATTTPESPFH 320 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKF 204 T + G + + LP V A Sbjct: 321 DTISTVVHGNRTFFDVVDVTLP-GGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATP 379 Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + ++ + ++ R + L D + Sbjct: 380 VAIFDGERRLQFYNQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAA 439 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 S +L Q D + Q + Q ++ + + L ++ + Sbjct: 440 LSVYRALDTQSDLWHLPNGQTLRVFATAHPQG--GATWVFENLTEQVDLETRYNTLVKVQ 497 Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 ET+D V+ G + +NP+F L + G L + Sbjct: 498 GETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEA--KPGTHIRALGEACAPSYDRP 555 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 + T R + L + + N N + + Sbjct: 556 DGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERA 615 Query: 442 INKR-KMEIEVMQLC 455 + ++ + + +L Sbjct: 616 LTEKNEALRKADELK 630 >gi|223936675|ref|ZP_03628585.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] gi|223894526|gb|EEF60977.1| multi-sensor signal transduction histidine kinase [bacterium Ellin514] Length = 759 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 86/649 (13%), Positives = 221/649 (34%), Gaps = 43/649 (6%) Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTE 245 A ++ +++ L E ++ + + + +V Sbjct: 121 RRKQAEAALRKSEEQLRALIENVTDYAIYMLDIEGRVASWNAGAERMKGYQAEEVIGKPF 180 Query: 246 YYAHKDDVLKTEKYP--LLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEY 302 + ++ L S + + + + ++ +++ S + + Sbjct: 181 SVFFSGEDAESRIPESLLRRSPIEGTTKHQGWCVRKDGTRFCASWSITPVRDGSGKINGF 240 Query: 303 LSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358 + + E V+ P V+S G + ++N + + K + Sbjct: 241 STVTRDVTEQAKAEEALQKSEERYRLLVEFSPCGVLVHSGGRVIFSNSTAAKMLGAKDLQ 300 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + P + L+ + + + ++ M Sbjct: 301 QMLGRSIRD--FIHPDCWAAVEKRIESLHA--GKIVPFLEEIW-VGFDGRPVDVMVGATP 355 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILST 477 + EN I + + + ++ + + +E+ D I +++++G + S Sbjct: 356 LVFEKDFENPVIQVIALDISELKRSEEDLRKSEERFRLAVESVKDYAIYMLDKDGRVTSW 415 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N ++ G +++L K E + E+ + ++ K+ Sbjct: 416 NEGAERITGLGADEVLSKVVNHC-EPDNKKAKKEAAKELERAAMEGRIQNEGWCQRKDGS 474 Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK-----------ES 582 + + ++ + D++E KQ + +++ E+ + Sbjct: 475 SYYAIWTVTAVKDAADTITGFLKVARDVTERKQHEEQVARWNTELEQRVAERTAQLEAAN 534 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 F VSH++R PL I GF ++++ L + ++ I S + +++ Sbjct: 535 KELEAFSYSVSHDLRAPLRHIDGFVDILQTTALEKL-DEESRQHLQTIADSAKQMAKLID 593 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 DLL S++ ++ ++ V+L V +A +Q + I ++P + D Sbjct: 594 DLLGFSRM--SRVKMNKRQVNLATLVQDAARHLQGDMKGRAIEWAI---GDLPTVEGDPE 648 Query: 703 SVKQIALNILSNAIHFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 ++Q+ +N++ NA+ ++ ++ I + ++ V+ VRD GVG +K F Sbjct: 649 MLRQVFMNLIDNALKYSRNQKKARVEIGSFPEEDDNVVF-VRDNGVGFDMRYADKLFGVF 707 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ + EGTG+GL + ++ + G+ + G P Sbjct: 708 QRLH--RAAEFEGTGVGLANVRRIIHRHGGRTWAEGEINAGATFYFTLP 754 Score = 114 bits (285), Expect = 7e-23, Method: Composition-based stats. Identities = 43/409 (10%), Positives = 117/409 (28%), Gaps = 20/409 (4%) Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + A L + +I V + Q P L + + + A Sbjct: 3 EDEARDVTLANRALKEGDIPFSLKRVVTRSAFLNELQKNTPDLIISDHALPDFDGSAALQ 62 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNH 308 + SSL E+ + + K + + E Sbjct: 63 LAREKSPDIPFIFFTSSLGEENILDNLKMGASDYVLKHRINDLAPAVRRVLREKEERIRR 122 Query: 309 PSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366 A + E ++ + + G + N + Y++ + I Sbjct: 123 KQAEAALRKSEEQLRALIENVTDYAIYMLDIEGRVASWNAGAERMKGYQAEEVIGKP--F 180 Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 S + + T ++ + + Sbjct: 181 SVFFSGEDAESRIPESLLRRSPIEGTT----KHQGWCVRKDGTRFCASWSITPVRDGSGK 236 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486 + + + + + ++ + ++E + G+ + G ++ +N +K+ G Sbjct: 237 INGFSTVTRDVTEQAKAEEALQKSEERYRLLVEFSPCGVLVH-SGGRVIFSNSTAAKMLG 295 Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545 ++ +L + F+ + + + + + + + LE+I +G + + + + + Sbjct: 296 AKDLQQMLGRSIRDFIHPDCWAAVEKRIESLHAGKIVPFLEEIWVG--FDGRPVDVMVGA 353 Query: 546 KKLPFSSCY-----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 L F + + DISE K+ + L +++ D+ Sbjct: 354 TPLVFEKDFENPVIQVIALDISELKRSEEDLRKSEERFRLAVESVKDYA 402 Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 44/397 (11%), Positives = 110/397 (27%), Gaps = 30/397 (7%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145 + +D G + + + G A ++IG D + I + L R++ G Sbjct: 148 IYMLDIEGRVASWNAGAERMKGYQAEEVIGKPFS--VFFSGEDAESRIPESLLRRSPIEG 205 Query: 146 KTTL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203 T W + + P+ + + +GF + ++ +++ Sbjct: 206 TTKHQGWCVRKDGTRFCASWSITPVRDGSGKINGFS--TVTRDVTEQAKAEEALQKSEER 263 Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLKTEKY 259 + L E V IFS + L K+ S+ ++ ++ Sbjct: 264 YRLLVEFSPCGVLVHSGGRVIFSNSTAAKMLGAKDLQQMLGRSIRDFIHPDCWAAVEKRI 323 Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEG 318 L + + +E + + L E+ S +E Sbjct: 324 ESLHAGKIVPFLEEIWVGFDGRPVDVMVGATPLVFEKDFENPVIQVIALDISELKRSEED 383 Query: 319 ENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 + E + G + N +T + + + ++ Sbjct: 384 LRKSEERFRLAVESVKDYAIYMLDKDGRVTSWNEGAERITGLGADEVLSKV--VNHCEPD 441 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 K + A K + + + + + A+ + Sbjct: 442 NKKAKKEAAKELERAAMEGR---IQNEGWCQRKDGSSYYAIW-TVTAVKDAADTITGFLK 497 Query: 433 IEPEDVDTRINKR-------KMEIEVMQLCSILEATS 462 + + + + ++ ++E V + + LEA + Sbjct: 498 VARDVTERKQHEEQVARWNTELEQRVAERTAQLEAAN 534 >gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 779 Score = 327 bits (838), Expect = 5e-87, Method: Composition-based stats. Identities = 135/652 (20%), Positives = 252/652 (38%), Gaps = 54/652 (8%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 D++ + + I QSP V+ + ++ Sbjct: 129 DQRVLARVPVGAASGESSRMLELISITQSPILRGAAPASVADIVLLDGSSVLAVQRVVRS 188 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320 LL + T G + +F + S R D + Sbjct: 189 LLGQVTVIQEVNAAWRPDTALSITLSATTGFVVLILGFAFHWQSTRAREG-DLINDAVRS 247 Query: 321 LTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378 +++ + + G + + + S + +S D+ G +S+L+++ + Sbjct: 248 RIDTALNRGRCGLWDWDLSRGRI-FWSQSMFTMLGMESRSDLLTFGEVSSLVNSDDIDLF 306 Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438 ++ + ++ + + + + N GI + Sbjct: 307 EVADQLI----SGKIGHID-QSFRMRHSSGHWIWLRVRCELSQNANG-GAHLIGIAVDVT 360 Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPF 497 + + K ++L +E+ + + + + ++ N +L P + + P+ Sbjct: 361 EQKSLAEKSIEADLRLRDAIESIPEAFVLWDADDRLVLCNSHFQRLHKLPDSAVAVGTPY 420 Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557 +E + + L + ++ Y Sbjct: 421 ETVVEVGRMPEIRA---RHSETGTVTLKAHTFDVQLADGNWLHVS---ERRTKDGGYVSV 474 Query: 558 MHDISEWKQEKNKLSHA-----------------------------------KKIAEKES 582 DI+ K+ + KL K AE + Sbjct: 475 GTDITRIKEHEQKLVENDLRLRATVIDLKRTQATLEQQAIKLADLAQKYADEKNRAEDAN 534 Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642 KS FLA +SHE+RTPL AIIGFSE++ N FG LG+ +Y EY I SG +L+++N Sbjct: 535 RAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSTKYSEYCRDILTSGQYLLEVIN 594 Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702 D+LD+SKIE+G+ NL E + L + E++ +V ++K + ++I I+AD R Sbjct: 595 DVLDMSKIEAGRTNLDMETLDLTGVLDESLRVVSGRTSDKGLTFDVRSDDDI-SIIADRR 653 Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762 +VKQI +N+LSNA+ FTP+ G+I+ + N V L + DTG+G+ + L + KPF Q Sbjct: 654 AVKQIMVNLLSNAVKFTPASGRIMARSKVFEN-SVTLTIADTGIGIAPHALRRLGKPFEQ 712 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 + + G+GLGL +AK++V+ + G I S P GT++ + P + + Sbjct: 713 VESQLTKTHAGSGLGLAIAKSLVNLHSGSMRIRSKPGAGTVVRVTLPRHRQA 764 >gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4] Length = 614 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 88/425 (20%), Positives = 173/425 (40%), Gaps = 45/425 (10%) Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456 TIQ + + ++ + I + E E +L S Sbjct: 213 EMTQQTIQMADGDYSGQ----VKVYSKDELGILSMAINDLSTKVEEAQETTESERRRLNS 268 Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-- 514 +L +DG+ +R G+I+ N ++ E L L+ + + L Sbjct: 269 VLTHMTDGVIATDRRGVIVIINDKAMEMLNISQEMALGVSILKVLKIDKEYTLRKLLENE 328 Query: 515 -----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 + + ++ TL +E + S +HD+++ ++ N Sbjct: 329 DDMYFDFSNDEIPVTLRGEFTLIQRETGFI------------SGIVCVLHDVTKQEKIDN 376 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 + + +F++ VSHE+RTPLT++ + E + + + ++ Sbjct: 377 E--------------RKEFVSNVSHELRTPLTSMRSYLEALLDGAW--KDPEIAPQFLKV 420 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-----KRI 684 + ++ ++ DLLD+S+++SGK L E ++++E I ++ K Sbjct: 421 TQEETDRMIRMIKDLLDLSRMDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDF 480 Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744 I+ +F + + D + Q+ NI++NAI ++P GG I +N+ V+L + D Sbjct: 481 SIKRNFTDRQLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGL-VETNDSVVLSISDE 539 Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804 G+G+ +L F ++ ++ GTGLGL ++K +V + GK + ST KGT Sbjct: 540 GLGIPKRDLANVFDRFFRVDKARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTF 599 Query: 805 EIIFP 809 I P Sbjct: 600 YISLP 604 >gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501] gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501] Length = 611 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%) Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454 R I+ R + K + E + + + ME E +L Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 S+L +DG+ +R G +++ N L E+ + + L+ L Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAISLLDIKNEEAIGQSILTLLDIEEEYT----LR 319 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572 ++L L++ T ++ +L + + + S +HD++E ++ + + Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377 Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632 + +F++ VSHE+RTPLT++ + E + + + Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423 Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690 + ++ ++NDLL++S++++G L E V+ +E V+ + + EK IR F Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 + D + Q+ NI++NAI ++P GG I ++ VIL + D G+G+ Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +L + + F ++ ++ GTGLGL +++ ++ A+ G + S KG+ I Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600 >gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19] gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19] Length = 680 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 81/404 (20%), Positives = 165/404 (40%), Gaps = 14/404 (3%) Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + ++ R+++ +L + E G I+ + +R V Sbjct: 141 AATAASILSLRRDSLARKVAIRQLQETQNKLELMEEVAGVGYWHIDVKKQDAFWSRGVYA 200 Query: 484 LFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + G E + + + + + L + + + Sbjct: 201 IHGLDRESFAPDLTNAIDLFHADDRDDVRRCVVDAMQNGA--DLHFECRLVRGDGEERIV 258 Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + DI++ + + L AK+ AE KSDFL+ +SHEIR Sbjct: 259 YARGGVERDDEGQPEFIFGILEDITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSHEIR 318 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657 TPLT I+G++ ++K P Y I+++G +L ++ D+LD SK+E+G++ L Sbjct: 319 TPLTTILGYANLLKGVGDLPKD---ARHYIGRINKAGEALLSLITDVLDFSKLEAGQVTL 375 Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716 +P L + + + + + I I + + P + D ++Q+ N++ NA Sbjct: 376 DPQPTDLRQLAGDVVDQFMAMTDTRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIGNAC 435 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT G + ++ + ++ ++V+D+G G+T + + F Q+ NS + G+GL Sbjct: 436 KFTHDG-YVAVTLAVSD-GQLRVKVKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGGSGL 493 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 GL + +V G+ + S +G+ P+ T P + Sbjct: 494 GLSICHEIVKLMQGRIGVESEAGQGSTFWFEIPVVPTEAPAPVV 537 >gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho melanesiensis BI429] Length = 423 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 159/375 (42%), Gaps = 35/375 (9%) Query: 447 MEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499 +E + +L +IL D I I ++G I N + + + Sbjct: 65 LEENIYELELSLKNHLTILNNIVDPIIISKKDGTITFANMEARNI---TRPGVEGRKLYE 121 Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTM 558 E + M T +I L E+K L+I+ L + Y + + Sbjct: 122 VFEDYYVNQMFEE----AQNKKEITSGEINLFVNGEKKYYELKIVPVTLEQNNERYIIIL 177 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 HD+++ + + + + +F++ VSHE+RTPLT+I G++E + Sbjct: 178 HDVTQERILE--------------NARKEFISNVSHELRTPLTSIHGYAEALLEDNLD-- 221 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 + I+ + ++NDLLD+ K+ESG FE ++ E + ++++ Sbjct: 222 DKELIRRFLTIIESEAARMTRLINDLLDLEKLESGNTQFIFEKINFTEILEHVRNIIEPL 281 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNE 735 + + + + + ++ D + Q+ LN++ NA+ +T G + ++ + N Sbjct: 282 TKDYNVDVEF-VSPDKIELIGDKDRLTQMVLNLVDNAVKYTSLKEKGEKKVLVEAYKDNN 340 Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 V L V+DTGVG+ +K + F ++ ++ + GTGLGL + K +V+ + G Sbjct: 341 HVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGTIEFT 400 Query: 796 STPAKGTLIEIIFPL 810 S GT + P+ Sbjct: 401 SKEGVGTKFIVTLPV 415 >gi|222053368|ref|YP_002535730.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] gi|221562657|gb|ACM18629.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32] Length = 946 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 116/756 (15%), Positives = 246/756 (32%), Gaps = 67/756 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148 D ++ + K G A +++G L + + + IG + + + + T Sbjct: 101 DEEKTIRSFNPAAEKIFGYLAQEVLGCNLQLLFESACGSGGSEGIGAAISKDTSINREYT 160 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-- 206 +G++ ++ I ++ + + + GIV A + + + Sbjct: 161 GKRRDGSHCHLDISISKVRVGDS------WMHMGIVRDLSEQKRAEAEYQAILRTAMDGF 214 Query: 207 -LHEIKKGHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 + + K G V + Q+ + V + E A + + + Sbjct: 215 WITDEKGGFLDVNDTYCQMTGYSRQELLAMQIGDVEAVLTAEEIKARMESIRNPGRIRFE 274 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322 T D F + E L + E Sbjct: 275 TRHRRKDGSSFDVEVSANYLPAGGGRFFAFLRDITCRNEMLGT---------LAKSEEKY 325 Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381 D + + + AN + + + P Sbjct: 326 RTLADNVTVGVTLISPKMEIISANRQSRQWYPELDE---KYSPICYKTFNNPPRDSICPD 382 Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441 P + +D + T W + + + E + Sbjct: 383 CPTVKTLADGG---IHEAVVTNPWKG-VARHFRIVSSPIKDNAGNITGVIESVEEVTALK 438 Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 ++ + + +L + LEAT+DGI ++ G I+S N+ + ++ P + F + + Sbjct: 439 RSEDEYSEALSRLTATLEATADGILAVDLNGRIVSYNQKLVQMLKIPGHILETDDFYLLI 498 Query: 502 E--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTM 558 + + + D + + K+ ++ +++ + + Sbjct: 499 ANIYSQLKGHDKLVRAEFEGDADRDFHDLLEF--KDGRVFERFCRPQRIGDTIVGRVSSF 556 Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618 DI+ ++ + +L HA+K+ +V+H+ LTAIIG+ + + Sbjct: 557 RDITGERKMEAQLRHAQKM-----EAIGTLTGKVAHDFNNMLTAIIGYC-HLSQMQIH-- 608 Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678 N ++ I + + LL+ S+ K + + + L++ V + + Sbjct: 609 SNDPLMQNIRQIITAAERAAGLTQSLLEYSR----KTPSNPQAMELNQVVRQV-NGFLSR 663 Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------ 732 + I + TS A+ I+AD ++Q+ +N+ +NA G++II T T Sbjct: 664 LIGEDIELVTSPADEPLVIIADAGQIEQVLMNLATNARDAMSGKGRLIIGTATTRIGEDF 723 Query: 733 --------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784 ++ V DTG GM +K +PF G GTGLGL + + Sbjct: 724 LQSHGFGNPGTYALVSVSDTGSGMDEDTCDKIFEPFFTTKP----VGNGTGLGLSIVYGI 779 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820 V + G + S GT + PL + PH+ + Sbjct: 780 VKQHNGYVTVESKKGCGTTFRVYLPLTGQA-PHEKV 814 Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats. Identities = 42/399 (10%), Positives = 110/399 (27%), Gaps = 35/399 (8%) Query: 87 WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146 W D G ++++ + G +++ M++ DV +L + + ++ + Sbjct: 215 WITDEKGGFLDVNDTYCQMTGYSRQELLAMQIGDVEAVLTAEEIKARMESIRNPGRIRFE 274 Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206 T +G++ V + LP G R F + N+ + ++K+ Sbjct: 275 TRHRRKDGSSFDVEVSANYLPAG-------GGRFFAFLRDITCRNEMLGTLAKSEEKYRT 327 Query: 207 LHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262 L + ++ K +I S P L K + D + + + Sbjct: 328 LADNVTVGVTLISPKMEIISANRQSRQWYPELDEKYSPICYKTFNNPPRDSICPDCPTVK 387 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EG 318 T + + E + + +++N+ + + + E Sbjct: 388 TLADGGIHEAVVTNPWKGVARHFRIVSSPIKDNAGNITGVIESVEEVTALKRSEDEYSEA 447 Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377 + T++ V +G + N + + K Sbjct: 448 LSRLTATLEATADGILAVDLNGRIVSYNQKLVQMLKIP-----GHILETDDFYLLIANIY 502 Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437 + L R++ A +++ P + + + + Sbjct: 503 SQLKGHDKLVRAEFEGDADRDFHDLLEFKDGRVFERFCRPQRIGD---TIVGRVSSFRDI 559 Query: 438 VDTRINKRKMEIEVMQLCSI----------LEATSDGIA 466 R + ++ ++ +I I Sbjct: 560 TGERKMEAQLR-HAQKMEAIGTLTGKVAHDFNNMLTAII 597 Score = 82.4 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 7/148 (4%) Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506 ++ ++L DG+ + + E I S N A K+FGY +++L + E Sbjct: 79 ALMQEALAENVLGQVVDGVVLFDEEKTIRSFNPAAEKIFGYLAQEVLGCNLQLLFESACG 138 Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEW 564 S + + +S D + + G ++ L I I K+ + + D+SE Sbjct: 139 SGGSEGIGAAISKDTS--INREYTGKRRDGSHCHLDISISKVRVGDSWMHMGIVRDLSEQ 196 Query: 565 KQEKNKLSHAKKIAEKE---SSHKSDFL 589 K+ + + + A + K FL Sbjct: 197 KRAEAEYQAILRTAMDGFWITDEKGGFL 224 >gi|258623855|ref|ZP_05718809.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM603] gi|258583844|gb|EEW08639.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus VM603] Length = 785 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 19/400 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G N Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G +++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L ++ +E V+E L L A +K + ++P + D ++Q+ N++SNA Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410 Query: 716 IHFTPSGGQI-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + ++ + V DTG+G+ E EK + Q+ + Sbjct: 411 MKFTKEGGVVMTVSAECDEQHADITIEVEDTGIGIPEEEQEKIFAMYYQVKPGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810 GTG+GL +++ ++ G + S G+ + PL Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510 Score = 47.7 bits (112), Expect = 0.008, Method: Composition-based stats. Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%) Query: 19 KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75 + Q+L++K N + + +E + + D E L + Sbjct: 98 RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157 Query: 76 FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135 I + + +A G + + + G +++G+ DV Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217 Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 + NT W +L +P YS++ G GFG Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274 Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247 ++ + + S+ L + + T Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334 Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301 K D K E +P + E + E E + Q + L + E Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393 Query: 302 YLSHRNHPSLS 312 + R L Sbjct: 394 VDATRLRQVLW 404 >gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens T118] Length = 1033 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 92/427 (21%), Positives = 169/427 (39%), Gaps = 29/427 (6%) Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVM 452 A + Q + S+ + + M + ++ + Sbjct: 123 PYEAFVFEFQHHTLISVVIFCADGLIVSLSIGAMRRYFSNYVITVAKLETALEQSRHNEA 182 Query: 453 QL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 +L L+ +A + G I N + Y +++L + P Sbjct: 183 ELTYQKYALDQ-HAIVAATDVRGTITYVNDLFCAISQYSRDELLGHNHRLLNSGAHPKEF 241 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565 + +S + + K+ L + I S Y DI+E K Sbjct: 242 FEAMYRTISSG--EVWKGDICNRAKDGSLYWVSTTIVPYVNDSGKPIRYVAIRADITERK 299 Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625 + K+ A+ + KS FLA +SHEIRTP+ A++G + ++ P E Sbjct: 300 RA-------KEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLESDLKP----EQRE 348 Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685 + +SG ++ I+ND+LD S+IE+G++ + P+ ++ + E L A EK + Sbjct: 349 QLIKVSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQAEEKGLE 408 Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740 + P +++ D + Q+ N++ NAI FT G +I I + + + Sbjct: 409 LFLDIEPETPLQVIGDPLRLTQVLNNLVGNAIKFTDHG-EIHIGVRVAHYGDATLTLCIN 467 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 VRDTG+GM ++ + F Q +S G+GLGL +AK +V+ G+ + S + Sbjct: 468 VRDTGIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLDSAVGQ 527 Query: 801 GTLIEII 807 GT + Sbjct: 528 GTNVSFS 534 Score = 44.6 bits (104), Expect = 0.069, Method: Composition-based stats. Identities = 11/113 (9%), Positives = 32/113 (28%), Gaps = 5/113 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D G + +++ +++G ++ H + + W G Sbjct: 200 TDVRGTITYVNDLFCAISQYSRDELLGHNHRLLNSGAHPKEFFEAMYRTISSGEVWKGDI 259 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200 +G+ +V + +P + + + R I + + Sbjct: 260 CNRAKDGSLYWVSTTI--VPYVNDSGKPI--RYVAIRADITERKRAKEAAQAA 308 >gi|294828133|ref|NP_712722.2| histidine kinase/response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] gi|293385980|gb|AAN49740.2| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Lai str. 56601] Length = 1017 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 114/505 (22%), Positives = 213/505 (42%), Gaps = 24/505 (4%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E E ++ + + + L N F + + +I L Sbjct: 242 EQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEISTGFNLFQ 301 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 P+++ K ++ + N E Sbjct: 302 KELPPEIAKY--WKEFYDRALSGEKVSV---ARKRPNQDGTFIFSELSFQPIRNTEYEIT 356 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + I + D ++ + + + E +S+ + + G IL N A K+ Sbjct: 357 GVSAISVDITDKKLAE-------EKFRLLFERSSEPHVLYDDFG-ILECNPATLKMLRCS 408 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + ++ + T + L I T E + EE + + +I + Sbjct: 409 DKKLVLGKHPIHFSVETEKEKTNELESIALEKGSYTFEWVYKRFNDEEFSVEVTLIPIII 468 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + H+I+E K ++ L AK+IAE S K+DFLA +SHEIRTPL +IG Sbjct: 469 HQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVS 528 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ G N EY + I SG +L ++ND+LD+S+IESG++ L +PVS ++ Sbjct: 529 LLE----GTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLT 584 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +E ++L + A EK +++ + + N+P I++D ++Q+ N++ N+I FT G +I + Sbjct: 585 NEVVNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKG-KIHL 643 Query: 728 STTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 S +I V+DTG+G+ +LE + F Q+ +S + G+GLGL ++K Sbjct: 644 SVEAEKFPNDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKK 703 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 + + G+ + S G+ + Sbjct: 704 LAELMKGEITVKSQVNSGSEFSLSI 728 Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 13/281 (4%) Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + L K + + N + + ++ +I S LL Sbjct: 116 QDSELRSTIFQKSANAILLLDPDKDLILEINQTASRYFEIQNQSEILNLP-FSNLLAQDF 174 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + N+ + Sbjct: 175 THFEYTSRKKKILSGETPSWDLEFKTLRGKKFWGNTSCRMISTHLNKIILVQIKDITEKV 234 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDI 492 + L +I+E + I I++ +L N + Y E Sbjct: 235 NTRKSLLEQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEIS 294 Query: 493 LRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 F L + LS + K ++ + + + + + Sbjct: 295 TGFNLFQKELPPEIAKYWKEFYDRALSGEKVSVARKR---PNQDGTFIFSELSFQPIRNT 351 Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 S DI++ K + K + + + DF Sbjct: 352 EYEITGVSAISVDITDKKLAEEKFRLLFERSSEPHVLYDDF 392 >gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 718 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 105/652 (16%), Positives = 231/652 (35%), Gaps = 57/652 (8%) Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239 G+ I + + + G L H + + + + H+ + + Sbjct: 98 GWSIPWSDDILREVIERGATLQSAARHDIVHYGAPIVWDGRLWGVLELRGSEMHVGNEEQ 157 Query: 240 -VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----N 294 + E E + L + Sbjct: 158 ALIHALTPLLAATIAAGRGDGDTRALTERQQRVIEMVRAELEAPLALGELLTFLLRWALD 217 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354 + ++ + E + +++ A + Sbjct: 218 ATGAEAGAIALVDRERGELVLHAYEGYGGDPLNR----------DAFGEARRRWSWEVGV 267 Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414 G +TLL + + I A L + + S+A Sbjct: 268 AGKVA---RTGRATLLRDVSRDPDYRAFAPEVRAELAAPIGADPPLAVLLLDSPRSVAFG 324 Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 + + + ++ +++ L + + +G+ +++++G + Sbjct: 325 ESEVAFVDALCH------LAVNPLRRALHYQQLLETSAHLGQVFASMPNGLVLMDQQGRV 378 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKITLG 531 L N A ++G + + + LTE+ + R E +L Sbjct: 379 LRHNPAWLMIWGLTPDAMRDPFYIPLDLVPLLLPRMRDPLALTELCAEGQRSPTEVQSLL 438 Query: 532 STKE--EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 + + L + F S + D++ + + KS+ Sbjct: 439 VRLNNPHQEVMLLSAPTRDSFGSLTGRLWIVSDVTRER--------------EADRLKSE 484 Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647 FL+ VSHE+RTPLT+I+G++E++ + F P E+ + N + IV DLL + Sbjct: 485 FLSIVSHELRTPLTSIMGYTELLLARDFTPG---EQREFVKTVYNEANHLYQIVEDLLGV 541 Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707 +++E+G + L VSL + +S+ + + + K + +P + AD V+Q+ Sbjct: 542 TRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKH-TMLIDIPPYLPPVYADRDKVRQV 600 Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKAMKP 759 +N+++NA+ ++P+GG+I ++ T ++ + V++ + D G+G+ +L + + Sbjct: 601 LVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGIAPEDLPRIWER 660 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 F ++ N R GTGLGL +AKA+V+ + G+ + S +G+ P+ Sbjct: 661 FYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTLPVA 712 >gi|45657308|ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600546|gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1017 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 114/505 (22%), Positives = 213/505 (42%), Gaps = 24/505 (4%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + E E ++ + + + L N F + + +I L Sbjct: 242 EQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEISTGFNLFQ 301 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 P+++ K ++ + N E Sbjct: 302 KELPPEIAKY--WKEFYDRALSGEKVSV---ARKRPNQDGTFIFSELSFQPIRNTEYEIT 356 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 + I + D ++ + + + E +S+ + + G IL N A K+ Sbjct: 357 GVSAISVDITDKKLAE-------EKFRLLFERSSEPHVLYDDFG-ILECNPATLKMLRCS 408 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 + ++ + T + L I T E + EE + + +I + Sbjct: 409 DKKLVLGKHPIHFSVETEKEKTNELESIALEKGSYTFEWVYKRFNDEEFSVEVTLIPIII 468 Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 + H+I+E K ++ L AK+IAE S K+DFLA +SHEIRTPL +IG Sbjct: 469 HQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVS 528 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ G N EY + I SG +L ++ND+LD+S+IESG++ L +PVS ++ Sbjct: 529 LLE----GTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLT 584 Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727 +E ++L + A EK +++ + + N+P I++D ++Q+ N++ N+I FT G +I + Sbjct: 585 NEVVNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKG-KIHL 643 Query: 728 STTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783 S +I V+DTG+G+ +LE + F Q+ +S + G+GLGL ++K Sbjct: 644 SVEAEKFPNDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKK 703 Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808 + + G+ + S G+ + Sbjct: 704 LAELMKGEITVKSQVNSGSEFSLSI 728 Score = 60.4 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 13/281 (4%) Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + L K + + N + + ++ +I S LL Sbjct: 116 QDSELRSTIFQKSANAILLLDPDKDLILEINQTASRYFEIQNQSEILNLP-FSNLLAQDF 174 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + + + N+ + Sbjct: 175 THFEYTSRKKKILSGETPSWDLEFKTFRGKKFWGNTSCRMISTHLNKIILVQIKDITEKV 234 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDI 492 + L +I+E + I I++ +L N + Y E Sbjct: 235 NTRKSLLEQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEIS 294 Query: 493 LRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 F L + LS + K ++ + + + + + Sbjct: 295 TGFNLFQKELPPEIAKYWKEFYDRALSGEKVSVARKR---PNQDGTFIFSELSFQPIRNT 351 Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588 S DI++ K + K + + + DF Sbjct: 352 EYEITGVSAISVDITDKKLAEEKFRLLFERSSEPHVLYDDF 392 >gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644] gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644] Length = 626 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 82/409 (20%), Positives = 158/409 (38%), Gaps = 46/409 (11%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + V + + E +L S+L SDG+ +R G I Sbjct: 234 VHVYGTDELGQLAQAVNNLSVRVEEAQESSDSERRRLDSVLSHMSDGVIATDRRGNISII 293 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-------EILSLDLRQTLEKITL 530 N + +D++ L+ M + ++ Q L Sbjct: 294 NDMACEYLDVESKDVIGTSILDVLKIREMQTMRELIENQDGIIVDMSDAGHDQILNAYFS 353 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 +E + S +HD++E ++ + F++ Sbjct: 354 TIQRESGFI------------SGLVCVLHDVTEQQKI--------------DRERRQFVS 387 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHE+RTPLT++ + E + + + + + ++ ++NDLL +S++ Sbjct: 388 NVSHELRTPLTSMRSYIEALNDGAW--KDPEVAPSFLKVTQDETDRMIRMINDLLSLSRM 445 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANE----------KRILIRTSFANNIPRILAD 700 +SG + L FE V+L+E + ++ + + K I+ F + D Sbjct: 446 DSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYTIKRDFTKRDLWVEID 505 Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 Q+ NI++NAI ++P GG I ++ VIL + D G+G+ +L F Sbjct: 506 TDKFIQVVDNIMNNAIKYSPDGGVITCRL-LETHNHVILSITDQGLGIPRKDLGHIFDRF 564 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 ++ ++ GTGLGL ++K +++ + GK ++ S KG+ I P Sbjct: 565 FRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYISLP 613 >gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces brasiliensis DSM 5305] Length = 642 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 88/620 (14%), Positives = 204/620 (32%), Gaps = 24/620 (3%) Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE 257 + F L E + + + + H DD L+ Sbjct: 20 AEPFRLLAESIPQLVWTALPDGRLDYTNRRWIEYTGMTAEESRGWSWKEALHPDDRLQCL 79 Query: 258 KYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLSAYF 315 + + + + + + + + + + Sbjct: 80 DQWTTAVDQLVPMKMETRMLSADGSSRWFLVQAEPIFDQEQRPICWFGTCTDIHEQRTKQ 139 Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 E V+ + + G +AN + S+DD+ + + Sbjct: 140 RLIEQRCQRLVEAAHDGIWEIGLDGRTLFANKRMAEMLGC-SLDDLLERNVYDFIFED-- 196 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 D + + L R R + + G+ Sbjct: 197 --DLDTAREHSLRRRSGISETFEWR---WRRADGREQWTLAASSPLVDASGHITGSVGVF 251 Query: 435 PEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 + R L ++++ + + +G + +NR +K+ G ++ Sbjct: 252 TDSTAHRNKNVSAADAARRRLLEDVVDSVEAPVYAKDLQGRYIFSNRHHTKIRGGVQNEV 311 Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552 L F ++ ++ + + + + + + + Sbjct: 312 LGARPDQFFGSELADALSANDRRVVEAGHSMSF-RELVPADGQVREFVSLKTPLRDADGQ 370 Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610 E + ++ + K +FLA ++HE+R PL I E++ Sbjct: 371 IHGVFGISTPQPETTRVNEQILTTLSDLSLANQRKDEFLAMLAHELRNPLAPIRTGIELL 430 Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670 R E +D+ ++ +V+DLLD+S+I GK++L + ++L + + + Sbjct: 431 ---RIAADDPEVLQETIEVMDQQSRQLVTLVDDLLDVSRIARGKIDLRHDLINLADVIDQ 487 Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730 A++ + ++ + ++ D R + Q+ N+L+NA +TP GG++ + Sbjct: 488 AVTASRPLLDDANHEFHVELPDCPLQVQGDSRRLVQVVSNLLNNAAKYTPRGGRVDLIVQ 547 Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790 N + + +RDTG+G+ + E+ + F Q+ Q R G G+GL L + +V + G Sbjct: 548 PEPN-RIGIAIRDTGIGIPEHMRERIFELFTQVDERQHDRYSGLGIGLTLVRTLVHLHNG 606 Query: 791 KFYIFS-TPAKGTLIEIIFP 809 + + S +G+ ++ P Sbjct: 607 EIQVHSDGQGQGSTFTVLLP 626 Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats. Identities = 38/416 (9%), Positives = 106/416 (25%), Gaps = 23/416 (5%) Query: 68 LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH- 126 + F + W G L + + G A + G + Sbjct: 17 ANPAEPFRLLAESIP-QLVWTALPDGRLDYTNRRWIEYTGMTAEESRGWSWKEALHPDDR 75 Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186 + + + + +T + +G++ + + A PI+ + + FG Sbjct: 76 LQCLDQWTTAVDQLVPMKMETRMLSADGSSRWFLVQ--AEPIFDQEQRPI--CWFGTCTD 131 Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246 + L ++ ++ ++ + + + + + Sbjct: 132 IHEQRTKQRLIEQRCQRLVEAAHDGIWEIGLDGRTLFANKRMAEMLGCSLDDLLERNVYD 191 Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306 + +DD+ ++ L S + + + + L + S + Sbjct: 192 FIFEDDLDTAREHSLRRRSGISETFEWRWRRADGREQWTLAASSPLVDASGHITGSVGVF 251 Query: 307 NHPSLS------AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359 + A L + VD P + G ++N + + Sbjct: 252 TDSTAHRNKNVSAADAARRRLLEDVVDSVEAPVYAKDLQGRYIFSNRHHTKIRGGVQNEV 311 Query: 360 IEIAGG-------LSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410 + L + + +++ L +D + ++ Sbjct: 312 LGARPDQFFGSELADALSANDRRVVEAGHSMSFRELVPADGQVREFVSLKTPLRDADGQI 371 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGI 465 + I + N + K + + + +L + L GI Sbjct: 372 HGVFGISTPQPETTRVNEQILTTLSDLSLANQRKDEFLAMLAHELRNPLAPIRTGI 427 >gi|229133944|ref|ZP_04262766.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196] gi|228649504|gb|EEL05517.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196] Length = 801 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 109/532 (20%), Positives = 219/532 (41%), Gaps = 47/532 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351 + E + + + T E ++ + G++ AN ++ + Sbjct: 294 GQVIEVVGSTVDITKRKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ N + Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMDESLENIQRILTEESIVTRLETVRQRNDGSL 405 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465 Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + +N + + N K FGY E++L PF + Q +P ++ L +I Sbjct: 466 AVYVVELNEDHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQGSPLIVR-LLEKIRE 524 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T++ + + L + DI+E + + L ++K+A Sbjct: 525 GQTSFTLQDEYVFPTRKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ GN Y N + + Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKST-----GNENDQGYINIVSSEIERIE 634 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I N+ + ++K + K+ + + + + ++L+Q A I IR F +I I Sbjct: 635 SITNEFMAVAKPQVVKIQPN----DIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDISLIP 690 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NIL NAI P GG+I+I N+++I+R D G G++ + + Sbjct: 691 CEGNQLKQVFVNILKNAIESMPRGGEILIQIDKLDNDQIIIRFIDQGCGISKERIPYLGE 750 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P+ Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHHGKVFIESEINKGTTVEVTLPI 796 Score = 108 bits (270), Expect = 4e-21, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367 + + +TV + F V H + F + S + + Sbjct: 186 RELIKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P L L + I + W + ++ + + + Sbjct: 246 ASIVPPHLVPQLMKH--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G + + + ++ L S ++ D I I +REG IL N+A K+FG+ Sbjct: 297 IEVVGSTVDITKRKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++I+ K + + IL + T+ + LL + + + Sbjct: 357 SSQEIIGKRL-PCVPDFLMDESLENIQRIL-TEESIVTRLETVRQRNDGSLLDVSLTVSP 414 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DISE KQ + + + ++S K L Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459 Score = 63.1 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 73/263 (27%), Gaps = 24/263 (9%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D G++ + ++ K G + ++IG RL V D L + +I +L ++ +T Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMDESLENIQRILTEESIVTRLETV 397 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-------ALGKRLD 201 +G+ L V + ++ PI I + + Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453 Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDDV 253 K+ L E V + D + + +S + Sbjct: 454 MKYRALIEQATDAVYVVELNEDHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQGSP 513 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 L + ++S Q+++ T + +LS + Sbjct: 514 LIVRLLEKIREGQTSFTLQDEYVFPTRKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571 Query: 314 YFDEGENLTP--ETVDKCPIPFF 334 +E + V + Sbjct: 572 KTEELLRKSEKLAVVGQLATAMA 594 >gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.] Length = 491 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 84/400 (21%), Positives = 181/400 (45%), Gaps = 30/400 (7%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 F P + + + DTR +L +++ SDG+ N E + Sbjct: 115 FTPEHLRATIAKAIYYTQTLRDIADTR----------SRLRTLVNRISDGVMCTNHENRV 164 Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 + N A ++ G E ++ F+ + + + E+I + Sbjct: 165 VLANPAFLRMIGCSAESVIGSSTDEFINIARIREIIKETLNVNDSRALELTEEIPVNRHS 224 Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590 + + L + + +HDI+ K+ KS+F++ Sbjct: 225 RSEEIILNVRCTPFRDRTGRNIGVITVLHDITALKKM--------------DRMKSEFVS 270 Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650 VSHEIR+P+ +++ +VI + G L + + R + + +LLD+++I Sbjct: 271 TVSHEIRSPMNSVLMQIQVILDGLAGELT-EKQRDILTRAYRKVENLAQMTTELLDLARI 329 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 ESG + L EPV++ + + + ++ A I + + +P +LA+ R+++++ N Sbjct: 330 ESGLITLEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPVLANRRNMEEVLSN 389 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +++NAI ++P GG+I +S + +N+ + +RV+DTG+G++ + + + F ++ + + Sbjct: 390 LITNAIKYSPGGGRITVSASI-ANDYLHIRVKDTGMGISAEDQHRIFERFYRVKDKKTRY 448 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GTGLGL + K++++++ G+ I S +G+ P+ Sbjct: 449 INGTGLGLVIVKSILESHQGRIKIESQEGEGSTFSFFLPI 488 Score = 45.8 bits (107), Expect = 0.033, Method: Composition-based stats. Identities = 24/235 (10%), Positives = 59/235 (25%), Gaps = 13/235 (5%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145 + + + + IG A +IG + +I I I + L + Sbjct: 158 TNHENRVVLANPAFLRMIGCSAESVIGSSTDEFINIARIR--EIIKETLNVNDSRALELT 215 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-----LGKRL 200 + + + +++ P R G ++H + Sbjct: 216 EEIPVNRHSRSEEIILNVRCTPFRDRTGRNIGV--ITVLHDITALKKMDRMKSEFVSTVS 273 Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260 + S ++ + + +++ R KV +L + D L + Sbjct: 274 HEIRSPMNSVLMQIQVILDGLAGELTEKQRDILTRAYRKVENLAQMTTELLD-LARIESG 332 Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 L+T E + + + N ++ Sbjct: 333 LITLEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPVLANRRNMEEVL 387 >gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b] Length = 612 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ E I ++ + E +L ++L +DG+ +R G I N Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 ++ +P T L + + +++S + + Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344 Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +I + F S +HDI+E ++ +N+ + F++ VSHE+RTPLT Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390 Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 ++ + E + + G N ++ I ++ ++NDLL++S+++ G + + E Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447 Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717 V+L++ +S ++ + + IR F + + D + Q+ NI++NAI Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507 Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777 ++P GG I I +++ VIL + D G+G+ +L + F ++ ++ + GTGLG Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566 Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 L ++K +V+A+ GK + S+ G+ I P Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598 >gi|221207869|ref|ZP_03580876.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] gi|221172366|gb|EEE04806.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans CGD2] Length = 751 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 104/611 (17%), Positives = 209/611 (34%), Gaps = 30/611 (4%) Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272 ++V + F + P + + + L+ + S P Sbjct: 4 AIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTLFLSDPAA 63 Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332 + + + + + + ++ P Sbjct: 64 YAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAARAQFEALLNALPDG 123 Query: 333 FFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391 L Y N + L + D AG + D ++ L + Sbjct: 124 VIAADTNARLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTSALEHALG 180 Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + H ++ + + A+ + + R ++ Sbjct: 181 GTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVR- 238 Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 ++++A+ D + I+R+ I+S N A ++FGY E + F + + H Sbjct: 239 ---RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM--RWLKRH 293 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK------ 565 L + L ++ + + + + + + I+ + Sbjct: 294 PLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLRETGAQRR 352 Query: 566 ------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619 + A + A + K + LA VSHE+RTPL I G+ EV++N L Sbjct: 353 QDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTL- 411 Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679 ++ + IDRS + +V D+LD S + +GK+ L PV + ++ ++ Q A Sbjct: 412 ---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAA 468 Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739 + I + + D ++Q+ N++SNA+ FTP+GG + +S H + +L Sbjct: 469 SSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH-DDTHAVL 527 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-P 798 V DTG G+ + F + +S G GLGL + + +V + G + S Sbjct: 528 TVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGR 587 Query: 799 AKGTLIEIIFP 809 +GT + P Sbjct: 588 NRGTTFTVKLP 598 Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 64/260 (24%), Gaps = 21/260 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147 D + L ++ +G G L DV + D L+ T Sbjct: 128 DTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSALEHALGGTRTTCE 187 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207 W VP+ A PI + G A +R S Sbjct: 188 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 247 Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250 + S IF + R + + ++ H Sbjct: 248 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 307 Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308 D + + ++ P + + T ++ + + + S R+ Sbjct: 308 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 367 Query: 309 PSLSAYFDEGENLTPETVDK 328 +A + ++ TV Sbjct: 368 GEQAATSNRLKDELLATVSH 387 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 29/280 (10%), Positives = 61/280 (21%), Gaps = 15/280 (5%) Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 AL L + + V + + R V LT+ Sbjct: 112 QFEALLNALPDGVIA-ADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTD---RDG 167 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 ++T + E+ + + + + S Sbjct: 168 RRVQTSALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASA 227 Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----- 365 + + VD P + + NP+ + Y Sbjct: 228 DRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM 287 Query: 366 ---LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L + PV L R D A+ ++ + +A++ E Sbjct: 288 RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRET 347 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460 Q ++ D +L + + Sbjct: 348 GAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSH 387 Score = 55.0 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 ID + + + G G R + + + + + + G Sbjct: 252 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 310 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L + +AA P+ R+ G + R R +R + Sbjct: 311 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 365 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268 + + ++ + K ++ + S + + DD L+ + + S Sbjct: 366 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTLRVQAIDAIDRSARS 425 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314 L + T K T+ + F + + S+ Sbjct: 426 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 471 >gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 752 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 99/376 (26%), Positives = 168/376 (44%), Gaps = 16/376 (4%) Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 +++ + S+ E+ D I + N +G+I S N A L D+L F + + + Sbjct: 101 ELKEAEERARSLFESQDDLIVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQG 160 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563 S + T I + L + ++ R + ++ + D++ Sbjct: 161 ESAIESNGTRIHDQRVETAL---------GPRWIAWREGLVRIDANHPAELQCVGRDVTN 211 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 + + L A+ A + KS FLA SHEIRTPL IIG S ++ + P Sbjct: 212 RTETEYALGEARDHANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDTSLTP----EQ 267 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 Y + SG+ +L ++ +LLD S+IE+GK++L P L + + + L+ A ++ Sbjct: 268 TTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQARQ 327 Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 + I +P ++ D ++QI LN+ NAI FTPSGG +I T + V+ Sbjct: 328 LEIAAYIDEQLPIEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQ 387 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 DTG+G+T + + F Q GTGLGL ++ +V G+ + S P G+ Sbjct: 388 DTGIGITPDAQARVFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGS 447 Query: 803 LIEIIFPLYDTSHPHD 818 E+ PL P + Sbjct: 448 TFEVSIPLPAHDSPPE 463 >gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus castenholzii DSM 13941] Length = 2161 Score = 327 bits (838), Expect = 6e-87, Method: Composition-based stats. Identities = 97/595 (16%), Positives = 219/595 (36%), Gaps = 31/595 (5%) Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293 R+ +V + E + + H I + TL Sbjct: 1573 ARLFAEVRRFNTELEQLVNERTAELQDAYARLAAERDRLQAVHAITVELTASLDLQTTLN 1632 Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353 + + + + R + G+ ++ + + + L Sbjct: 1633 RALELASKAIGARRGSIMLKDLKNGQLECRAVLNA--DGSVDSKRFTIMFERGAGLSGWV 1690 Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413 + + + IA + ++ V+ + T + Sbjct: 1691 MQRQEAVCIADVRDDPRWLHEEGRAEEVRSVIAAPLMTQDSPLGVLILTSPEVDFFNQDQ 1750 Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIIN 469 + AN+ + + D + + E + +IL++ +G+ +++ Sbjct: 1751 LQLLATIANEVAIVINNATLYSIINDIATERGNLWSQQREENSKNQAILQSLGEGVIVVD 1810 Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL---------D 520 + I+ N A ++ G P + ++++P + E + I + Sbjct: 1811 GDQNIVLYNAAAEQILGVPAQFVVKQPLSRIAEYCAGDGASERACRIYEGLRQGLQALTE 1870 Query: 521 LRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579 ++ ++ + +L + + +HDI+ Sbjct: 1871 AQKNHNRMLELPEPTQSILLNFAPWVGPRNAMYGSVVVIHDITR--------------EV 1916 Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639 + K +F++ VSHE+RTPLT+I G+ +++ L N + Y + + + + +++ Sbjct: 1917 EADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKL-NEEQLSYLSVVKSNTHRLMN 1975 Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699 ++ND+L+I +I+ K+ L F+ +S+ E ++ KR+ A++ P ++A Sbjct: 1976 LINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMA 2035 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759 D + Q+ LN+ SNA+ +T G + + + + V D GVG++ + + + Sbjct: 2036 DETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRR 2095 Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 F + N + GTGLGL +AK+ V+ + G+ ++ S P KG+ I PL Sbjct: 2096 FYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIPLTQPE 2150 >gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM 19370] gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM 19370] Length = 1172 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 109/668 (16%), Positives = 233/668 (34%), Gaps = 40/668 (5%) Query: 175 FSGFRGFGIVHVNR------VDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFS 226 GF G + V N +++F L + + + Sbjct: 254 VQGFIGCCALTVLPIAAVLGERNRLVHALSANERRFRELSQSAPIGIVTIGLDHAITYAN 313 Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINL-NQYT 284 + R ++ + +D+ +T L + + E+ E + Q Sbjct: 314 PEMARIAGRSAEQLCTEKVGENLGEDLARTLDQTLESCTSETDFAEVSFALARDGDGQRW 373 Query: 285 KKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339 + F + + ++ + E D + G Sbjct: 374 FQTRFAPRLDEQRRLLGWIGTVMDVTQLRRSEQRLAQSERELRLLADNSGDVICSFGPSG 433 Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399 + YA+ + + + D + L + +D + Sbjct: 434 VILYASAATERMLGCSARDLVGR--DLLSFVDGDDVEHVRQTFADSSSGRHGETCGFRWV 491 Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---- 455 L + E P + + + ++ + ++ + +L Sbjct: 492 L----PDGERLWVEASFGASGEGATPGPL--VATIRDISERQMAEAEILEKNARLRETNR 545 Query: 456 --SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNH 511 S+ E ++ G + G + + + G + + + + + + + Sbjct: 546 LMSLAENLAEFGHWHYDLVGGASDWSPSFMDIHGLMPDRVPNIEAYFATIVPEQRASVRD 605 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQE 567 + + + T + ++ ++ + I + DI+ + Sbjct: 606 VFEDAMRTGRA--FRRATRIVRPDGQIRTVEVQGQGEIDAHGNLAGIFGVCQDITVELEV 663 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEY 626 + +LS A+ AE + ++ +LA +SHEIRTP+T ++ E++ P P Sbjct: 664 QQELSRARDRAEAAAEERARYLAVMSHEIRTPMTGVLATYELLAQYGNDIPWPQPDIPRL 723 Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686 + ++ I++D+LD +K E+GK++L + EA++ A+ L + A K I + Sbjct: 724 ISATQAHAKTLMSILDDVLDQAKGEAGKLDLELVAFNPGEALAGAVDLFRGQAAAKGIAL 783 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746 A +P ++ D QI N+LSNAI FT G ++ S + V DTG+ Sbjct: 784 ECH-AEAMPDVVGDPARFHQIVSNLLSNAIKFTSQG-KVSASCEQLDGAFYEVCVSDTGI 841 Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G+ L++ +PF Q + R GTGLGL + +++V + G+ + S P++G+ + Sbjct: 842 GIAADALDRIFEPFAQADTTTSRRFGGTGLGLAIVRSLVTSMGGELTLDSVPSRGSTFTV 901 Query: 807 IFPLYDTS 814 PL S Sbjct: 902 RLPLSAQS 909 Score = 81.2 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 36/389 (9%), Positives = 91/389 (23%), Gaps = 25/389 (6%) Query: 74 FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133 F + I + + E+ + G A ++ ++ + + Sbjct: 289 FRELSQSAPIGIV-TIGLDHAITYANPEMARIAGRSAEQLCTEKVGENLGEDLARTLDQT 347 Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193 + + + + +G P R G+ G V Sbjct: 348 LESCTSETDFAEVSFALARDGDGQR-WFQTRFAPRLDEQRRLLGW--IGTVMDVTQLRRS 404 Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250 + +++ L + I + + ++ V + Sbjct: 405 EQRLAQSERELRLLADNSGDVICSFGPSGVILYASAATERMLGCSARDLVGRDLLSFVDG 464 Query: 251 DDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHR 306 DDV + + +S + + + + FG + Sbjct: 465 DDVEHVRQTFADSSSGRHGETCGFRWVLPDGERLWVEASFGASGEGATPGPLVATIRDIS 524 Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--------ANPSFLLLTKYKSVD 358 A E ET + + G+ Y +PSF+ + Sbjct: 525 ERQMAEAEILEKNARLRETNRLMSLAENLAEFGHWHYDLVGGASDWSPSFMDIHGLMPD- 583 Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418 + + + A + + RT A R I + Sbjct: 584 ---RVPNIEAYFATI-VPEQRASVRDVFEDAMRTGRAFR-RATRIVRPDGQIRTVEVQGQ 638 Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKM 447 + + G+ + ++++ Sbjct: 639 GEIDAHGNLAGIFGVCQDITVELEVQQEL 667 >gi|269838421|ref|YP_003320649.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] gi|269787684|gb|ACZ39827.1| multi-sensor signal transduction histidine kinase [Sphaerobacter thermophilus DSM 20745] Length = 788 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 128/792 (16%), Positives = 265/792 (33%), Gaps = 98/792 (12%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149 D G ++ ++ +G + +++ + + + R T +G Sbjct: 23 DPAGVIQYRNQAAQHLLGGPET---------LENVVQLGGPADLCQRVARGETVFGIPL- 72 Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-------RLDK 202 L I L+A P+ G R + AL + Sbjct: 73 -----PGLGPDIRLSASPVRDTGGATVGMTVVLRREPVRDNTGLDALQLDAIAHAIASGR 127 Query: 203 KFSHLHEIKKG---------------HSSVEKEKYDIFSQQSPPPHLRMKNK-------- 239 L E G S +++ P P + + Sbjct: 128 DIDTLLEHTFGFLQPLIGCDNISLAVPSPEDEDGRLRVLALRPTPFSTIFSTGEVAEAVQ 187 Query: 240 ---------VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290 V T A ++D L + E TINL+ T + Sbjct: 188 RVATNGVPVVVDDTFSAAFQEDALLRSLGIRSYAIYPLRGEHGILGTINLSSRTPAAFSD 247 Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENL-TPETVDKCPIPFFVYS---HGNLFYANP 346 + + +++ L E + + + P V + N Sbjct: 248 RVLAVIERVASHVALAVEKILLLESTERHRVFLEQVLQYVPAGVIVVGPPPDLRVLTVNK 307 Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406 + + + GL P L + + + R + Sbjct: 308 HYRGFLDEPYRSE-KDLVGLPLRTIIPNLDEVGFGAALAKVFTTGET--VEVRDVVYEGL 364 Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSILE 459 ++ + ++ G+ + + +R++E + L +I+E Sbjct: 365 ERGTIHLDSWYVPLRDRLGRVEAVIGLVTDTTERVRYQRRIEELAKSAAQQATALSTIIE 424 Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-----KPFTVFLEQNTPSVMNHYLT 514 + +G+ + + G ++ N A ++LFG E L+ F+ + + + Sbjct: 425 SMVEGVYVCDGTGRVVLVNEAGARLFGITTEQALQPLAKYAEFSQARYPDGRPIPTEEMP 484 Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569 L + + + + + + LR + +D++ +Q + Sbjct: 485 LARGLRGETSADWEQIVRRADTGEDIHLRFAYSPIVDDRGTIVGAVAVANDMTRTRQLE- 543 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYA 627 + +FL+ +HE++TP+T++ F++ + QR G L R Sbjct: 544 -------------RQREEFLSIAAHELKTPVTSVKLFTQGMLRTLQRRGTLAPERAERDL 590 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-KRILI 686 I + + +V+DLLD+S++ +G++ HFE V L V + + +E R + Sbjct: 591 QTILSQIDRLTRLVDDLLDVSRVRTGRLEYHFETVDLIALVEAVVDRFRRQIDEDDRYEL 650 Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTG 745 R A ++P + D + Q+ N+LSNAI ++P+GG I + + + + V D G Sbjct: 651 RLIAAPDLPATVVDPHRIDQVLTNLLSNAIKYSPTGGTISVQVGPGAESGWIRIEVSDPG 710 Query: 746 VGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803 VG+ E+ +PF + + G GLGL +++A+V+ + G + S G+ Sbjct: 711 VGLDPPEIAGLFEPFARAAGNTTVRNISGIGLGLYISRAIVERHGGLIWAESEGQGCGST 770 Query: 804 IEIIFPLYDTSH 815 + P+ SH Sbjct: 771 FIVELPVRPASH 782 Score = 46.2 bits (108), Expect = 0.022, Method: Composition-based stats. Identities = 19/244 (7%), Positives = 51/244 (20%), Gaps = 9/244 (3%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLL-----K 138 + D G + ++E + G + + + + S + D + + Sbjct: 430 VYVCDGTGRVVLVNEAGARLFGITTEQALQPLAKYAEFSQARYPDGRPIPTEEMPLARGL 489 Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198 R T + T + + A PI G + + + Sbjct: 490 RGETSADWEQIVRRADTGEDIHLRFAYSPIVDDRGTIVGA--VAVANDMTRTRQLERQRE 547 Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258 +H + + + Q+ + + L + Sbjct: 548 EFLSIAAHELKTPVTSVKLFTQGMLRTLQRRGTLAPERAERDLQTILSQIDRLTRLVDDL 607 Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318 + L + + F + L + Sbjct: 608 LDVSRVRTGRLEYHFETVDLIALVEAVVDRFRRQIDEDDRYELRLIAAPDLPATVVDPHR 667 Query: 319 ENLT 322 + Sbjct: 668 IDQV 671 Score = 39.6 bits (91), Expect = 2.4, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 17/36 (47%) Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489 L + L+ + + + + G+I N+A L G P Sbjct: 8 LRAALDQFDEAVLVADPAGVIQYRNQAAQHLLGGPE 43 >gi|84385138|ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid family) [Vibrio splendidus 12B01] gi|84379735|gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid family) [Vibrio splendidus 12B01] Length = 1640 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 19/382 (4%) Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + QL +IL + +++ E + N +LFG ++ Sbjct: 917 ATEALRKAQHQLYNILNTSPIAASVV-VEEQVRYANDTAKRLFGVERTELNSINVETIYN 975 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--D 560 + + + + + + + + + L + D Sbjct: 976 SLSDRDSLYKELNLKG----KVVNRELVLRKFDGSSFVALVSYYLLELDGEVATLFWAFD 1031 Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620 ISE K+ +L K+ A+ S KS+FLA +SHEIRTP+ AIIG S + G + N Sbjct: 1032 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISN 1087 Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680 P Y + RSG+ +L I+ND+LD SKIE+G++ + P + I L++ A+ Sbjct: 1088 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMESKAD 1147 Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736 EK++ + S + ++ D + Q+ LN++ NAI FT S G + ++ TH + + Sbjct: 1148 EKQLKLSMSIDPELDTPLIGDPLRLFQVILNLIGNAIKFT-SHGNVTLNVTHLESNDRSV 1206 Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795 + + V DTG+G++ K + F Q ++ + GTGLGL +++ +V A K + Sbjct: 1207 SMKVVVSDTGIGISEENRRKLFQAFSQADSTTTRKFGGTGLGLNISQKLVQAMGSKISVA 1266 Query: 796 STPAKGTLIEI--IFPLYDTSH 815 S KG+ P D+ Sbjct: 1267 SVLGKGSEFSFVLTLPRSDSEE 1288 Score = 45.0 bits (105), Expect = 0.059, Method: Composition-based stats. Identities = 14/157 (8%), Positives = 43/157 (27%), Gaps = 8/157 (5%) Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD---- 359 + + ++ ++ PI V + YAN + L + + Sbjct: 910 QIAIANDATEALRKAQHQLYNILNTSPIAASVVVEEQVRYANDTAKRLFGVERTELNSIN 969 Query: 360 ----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415 +L L + ++L + D + A + ++ + E + Sbjct: 970 VETIYNSLSDRDSLYKELNLKGKVVNRELVLRKFDGSSFVALVSYYLLELDGEVATLFWA 1029 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 + + E + + + ++ + Sbjct: 1030 FDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHE 1066 >gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK [Pediococcus acidilactici 7_4] gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284] gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK [Pediococcus acidilactici 7_4] gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284] Length = 615 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 162/398 (40%), Gaps = 38/398 (9%) Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 E + +++ E E +L S+L +DG+ +R G I N Sbjct: 234 GDDELGQLAAAVNDLSVRVEESQELTESERRRLDSVLGYMTDGVLATDRRGRITIVNEMA 293 Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541 + + I+ K L+ + L + L + +E+ L L Sbjct: 294 TDFLNLENDQIVGKSILDILDLRGSVTLRDLLEN---------QDPEVLDLSNDEQDLIL 344 Query: 542 RIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 + S + +HD++E ++ + F++ VSHE+R Sbjct: 345 HASFALIQRESGFISGLVCVLHDVTEQQKIDQD--------------RKRFVSNVSHELR 390 Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 TPLT++ + E + + G +P + + ++ ++NDLL++S+++ G Sbjct: 391 TPLTSMKSYIEALVD---GAWKDPNVAPNFLKVTQEETDRMMRMINDLLNLSRMDLGTAR 447 Query: 657 LHFEPVSLDEAVSEAISLVQLYAN-----EKRILIRTSFANNIPRILADLRSVKQIALNI 711 L E V+L+E + + + EK I+ F + D ++Q+ NI Sbjct: 448 LDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIWVEVDTDKIQQVLDNI 507 Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771 ++NAI ++P GG I ++ VI+ + D G+G+ + F ++ ++ Sbjct: 508 MNNAIKYSPDGGVITCRL-VETHNHVIMSITDQGLGIPKEAISHVFDRFYRVDKARSRAQ 566 Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++K +V + G+ ++ S +G+ I P Sbjct: 567 GGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLP 604 Score = 40.8 bits (94), Expect = 1.1, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 10/142 (7%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D G + ++E + +++G + D+ L + + + DLL+ Q+ Sbjct: 280 TDRRGRITIVNEMATDFLNLENDQIVGKSILDI---LDLRGSVTLRDLLENQDPE----- 331 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 + + + + + I + SG ++H KR SH Sbjct: 332 VLDLSNDEQDLILHASFALIQRESGFISGL--VCVLHDVTEQQKIDQDRKRFVSNVSHEL 389 Query: 209 EIKKGHSSVEKEKYDIFSQQSP 230 E + + P Sbjct: 390 RTPLTSMKSYIEALVDGAWKDP 411 >gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter turnerae T7901] Length = 668 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 192/491 (39%), Gaps = 19/491 (3%) Query: 332 PFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRS 389 F+ + G +F Y +D I+ LL+ D + V Sbjct: 35 GFWEWDLGTNKLRWYGTFWRELGYSELD-IQTMTAPEVLLNYIHPDDRALFQQAVTATIR 93 Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449 + + RL L + + G + ++ + Sbjct: 94 EGVALDLCYRLQA---KAGYYLWVRVNGQGFRDASGWTHQLAGANYNISQLKQTEQALRA 150 Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 + I+ T DG+ + + ++S + + G+ ED+ T + Sbjct: 151 SEARYSRIIAGTRDGVWDWSFDNNVISFSDICWEQIGFTAEDVRELNLTTIADWEARMSP 210 Query: 510 NHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DI 561 +L R + K+ +R + ++ + DI Sbjct: 211 VDVKRFKEALRKHILERAPFDIEYQIKAKDGTQRWIRARAEATYNKEGRAVKISGSNMDI 270 Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621 +E K + + AK AE+ + KS+FL+ +SHE+RTPL AI+G+ ++ + P Sbjct: 271 TELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLF---DYDTNLTP 327 Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681 + + ++G +L ++N++LD++KIE+G+M L EPV + EA+ LV A E Sbjct: 328 DQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLAQE 387 Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740 + I I + I AD +KQ LN++SNA+ + G + IS T + + Sbjct: 388 QGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLRIM 447 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG G+ + + +PF ++ EG+G+GL + K +V+ G S Sbjct: 448 VTDTGRGIPDALQAQVFEPFNRLHAELG-AVEGSGVGLVITKRLVEMMGGTLGFHSEVGV 506 Query: 801 GTLIEIIFPLY 811 G+ + PL Sbjct: 507 GSRFWMDLPLA 517 >gi|49478009|ref|YP_037213.1| sensory transduction histidine kinase; sporulation kinase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218904259|ref|YP_002452093.1| sporulation kinase [Bacillus cereus AH820] gi|228931049|ref|ZP_04094003.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|49329565|gb|AAT60211.1| sensory transduction histidine kinase; sporulation kinase A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218537874|gb|ACK90272.1| sporulation kinase [Bacillus cereus AH820] gi|228828612|gb|EEM74294.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 801 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 103/533 (19%), Positives = 209/533 (39%), Gaps = 47/533 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351 + E + + + + T E ++ G + AN ++ + Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKI 353 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ N + Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRNDGSL 405 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465 Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + ++ N + N + FGY E++L F+ + Q++ ++ L +I Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T + + + L + DI+E + + L ++K+A Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ N Y N + + Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I + + ++K + K+ + + + + + L+Q A I R IP I Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 690 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NIL NAI P GG+I+I N +V +R D G G+ + + Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P++ Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLPIF 797 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%) Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367 + +TV + F V H + F + S + + Sbjct: 186 RELKRSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245 Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427 + P L L + I + W + ++ + + + Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296 Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487 + G + + + + ++ L S ++ D I I +REG IL N+A K+FG+ Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKIFGW 356 Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547 ++I+ K + + +IL T+ + LL + + + Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRNDGSLLDVSLTVSP 414 Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589 + DISE KQ + + + ++S K L Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459 Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 23/286 (8%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148 D GY+ + ++ K G + ++IG RL V D L + +I +L ++ +T Sbjct: 338 DREGYILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 +G+ L V + ++ PI I RL ++ Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453 Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253 + + + R + ++ SL+ +D Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513 Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313 + + ++S Q+++ T + +LS + Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571 Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358 +E + + + + N A F+ L K + Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617 >gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1069 Score = 326 bits (837), Expect = 6e-87, Method: Composition-based stats. Identities = 130/667 (19%), Positives = 228/667 (34%), Gaps = 47/667 (7%) Query: 167 PIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225 PI+ E +GF + + D G+ + + V +F Sbjct: 139 PIHGE-GEIAGF-----LRLRYALKDSALTGGRVWTIFGLAVAGAYVFLALVLNAMLHLF 192 Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285 + + V + S +E + ++ Sbjct: 193 VLRPVNTLRQALEAVEAGDLDQTVPVAGGDALGRLGAAFNAMSARLRETSRWLGESRTEV 252 Query: 286 KQYFGTLQNNSKESFEYLSHRN---------HPSLSAYFDEGENLTPETVDKCPIPFF-- 334 +++ L E L+ N L ++ Sbjct: 253 EEHRLLLARRVDERTAELARTNARLTTEITARTRAEDSLSRHLALYRAILESTAEAVLCV 312 Query: 335 -VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRT 392 S + N FL L + D Sbjct: 313 SANSDREVLVCNRRFLDLWDLPENWAQRPEPMDRFKPFLEKLADPDAVASGFRTLMLDGK 372 Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452 +A + + + Q + + + R + ++ + Sbjct: 373 SMAETCHATS---DGRYIE----RRSGPILQDGVYIGRVFSYVDVTARRRTEAELRQTLA 425 Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 Q ++L T G+A + N + L GY E IL + V + + + Sbjct: 426 QRDALLGNTRIGLATT-ENAVCTDINAQGAALLGYTREAILGQSIAVLIPD---AAVYQS 481 Query: 513 LTEILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQE 567 L E D + + + +++ LR+ K + + DI+E K+ Sbjct: 482 LAESSDHDFVTQGFTRRECQVQRGDGEMIWLRLHGKSVRPEAPTISVVWAFDDITEEKRR 541 Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627 + L A+ AE+ S K FLA +SHEIRTPL A+IG S+ + + P I++ Sbjct: 542 QQHLEQARDQAEEASRAKGAFLAVMSHEIRTPLNAVIGLSDALLEGQAAP----EQIDHL 597 Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687 I S +L +VND+LD SKIE+GK+ L V+EA+ V+L A++KR+ + Sbjct: 598 RAIRESAGHLLGVVNDILDFSKIEAGKLVLERRHFDPRALVAEALRAVELVASQKRLALS 657 Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-----EVILR 740 + A N+P + D ++QI LN+L NA+ FT +G + + T + + Sbjct: 658 ATIAPNVPAALRGDPGRLRQILLNLLGNAVKFTAAGSVAVTVETVPADQTPAGRIGLAVA 717 Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800 V DTG+G+ + + F Q P R GTGLGL ++K +V+ G + S Sbjct: 718 VTDTGIGLDPTRASELFERFNQGPGKAARRFGGTGLGLAISKELVERMGGHIGVTSRQGA 777 Query: 801 GTLIEII 807 G+ Sbjct: 778 GSRFAFT 784 Score = 38.1 bits (87), Expect = 6.8, Method: Composition-based stats. Identities = 16/241 (6%), Positives = 56/241 (23%), Gaps = 12/241 (4%) Query: 96 KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IE 153 +I+ + +G ++G + + + + G T Sbjct: 447 TDINAQGAALLGYTREAILGQSIAVLIP--DAAVYQSLAESSDHDFVTQGFTRRECQVQR 504 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 G + + L + S F + + ++ + K Sbjct: 505 GDGEMIWLRLHGKSVRPEAPTISVVWAFD---DITEEKRRQQHLEQARDQAEEASRAKGA 561 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273 +V + + ++ + + + ++ + E Sbjct: 562 FLAVMSHEIRTPLNAVIGLSDALLEGQAAPEQIDHLRAIRESAGHLLGVVNDILDFSKIE 621 Query: 274 DFHTINL-----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + + + ++ + + LS P++ A + + Sbjct: 622 AGKLVLERRHFDPRALVAEALRAVELVASQKRLALSATIAPNVPAALRGDPGRLRQILLN 681 Query: 329 C 329 Sbjct: 682 L 682 >gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga naphthophila RKU-10] Length = 412 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 84/413 (20%), Positives = 174/413 (42%), Gaps = 29/413 (7%) Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461 + + L P ++ + + ++E+ +IL + Sbjct: 21 RKRLSEYKILIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSL 80 Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 S+ I I++REG I N +L + +P+ E +N + E + + Sbjct: 81 SEPIFILDREGKITFLNEIARELVQ-GRINPEGRPYYEIFEDYY---INEMVEETIKSEE 136 Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580 Q E+K +++I +L + + HD+++ ++ Sbjct: 137 PQEGTL-VTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDE----------- 184 Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640 + +F+A VSHE+RTPLT+I G++E + + I+ + + Sbjct: 185 ---MRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239 Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700 +NDLLD+ K+E ++N + V L E V ++Q A E + + + + + + Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVV--VKGN 297 Query: 701 LRSVKQIALNILSNAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756 + Q+ LN++ NA+ +T G ++ + + + + V++ V DTG G+ + Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVR-AYDTPDWVVVEVEDTGPGIPKESQSRI 356 Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + F ++ ++ + GTGLGL + K +VD + GK + S +GT++ + P Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLP 409 >gi|260897182|ref|ZP_05905678.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus Peru-466] gi|308087996|gb|EFO37691.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus Peru-466] Length = 718 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ S + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 516 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E E+ K + Q + Q + + + +A G Sbjct: 117 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 175 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + + G +++G+ DV P + + + L Sbjct: 176 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 235 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G +L +P YS++ G GFG ++ + + Sbjct: 236 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 291 Query: 213 GHSSV 217 Sbjct: 292 HELRT 296 >gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13] Length = 611 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 174/396 (43%), Gaps = 25/396 (6%) Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + Q + ++ ++ + + E E +L S+L +DG+ +R+G I+ N Sbjct: 236 DEIGQLALSFNNLTKKLQEAQATTEGERRKLSSVLSHMTDGVLATDRKGRIILINEPALG 295 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 + E +L KP L + ++E SL L + EK ++ Sbjct: 296 MLNVSRETVLNKPIVEVLGIEETHSFDQLVSEQESLILDFSTEKEPYILRASNSIIQ--- 352 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603 K+ F + +HDI+E ++ + + +F+A VSHE+RTPLT + Sbjct: 353 --KETGFINGLITVLHDITEQEKIDLE--------------RREFVANVSHELRTPLTTM 396 Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663 + E + + + + + + ++ +VNDLL +SK++S N + V Sbjct: 397 RSYLEALADGAWQ--DDEIAPRFLDVTQTETERMIRLVNDLLQLSKMDSRDYNFYKNSVD 454 Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723 E ++ I + + +++ S N + D + Q+ NI+SNA+ ++P GG Sbjct: 455 FVEFFNKIIERFE-MSKSQKVDFVRSMPNQEVFVSIDTDKITQVLDNIISNAMKYSPEGG 513 Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782 I + ++++ + D GVG+ +L K + F ++ ++ GTGLGL +AK Sbjct: 514 TITFTVDIEEAANQILVSISDQGVGIPKSDLNKIFERFYRVDKARTRMLGGTGLGLAIAK 573 Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818 M+ A+ G + S KGT I P+ + D Sbjct: 574 EMIQAHDGDIWASSVEGKGTTIYFTLPISEEEQEGD 609 >gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c] Length = 593 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 178/394 (45%), Gaps = 33/394 (8%) Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481 ++ E I ++ + E +L ++L +DG+ +R G I N Sbjct: 213 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 270 Query: 482 SKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539 ++ +P T L ++ T + E++ T +++ L + Sbjct: 271 LNFLDKTENEVKGEPITQLLGLKEVTIQDLMSTQQELIVTANANTHDELILHAD------ 324 Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599 +I + F S +HDI+E ++ +N+ + F++ VSHE+RTP Sbjct: 325 -FSLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTP 369 Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 LT++ + E + + G N ++ I ++ ++NDLL++S+++ G + + Sbjct: 370 LTSLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMD 426 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNA 715 E V+L++ +S ++ + + IR F + + D + Q+ NI++NA Sbjct: 427 LEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNA 486 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775 I ++P GG I I +++ VIL V D G+G+ +L + F ++ ++ + GTG Sbjct: 487 IKYSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTG 545 Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 LGL ++K +V+A+ GK + S+ G+ I P Sbjct: 546 LGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 579 >gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483] gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp. 2_2_4] gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC 3f] Length = 785 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 25/521 (4%) Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360 L + + +DK V G L YAN F+ ++ Sbjct: 145 VLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAGDGTLVYANKQFIEEYGVT--QEL 202 Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420 L + + + +D + A A +E ++ + Sbjct: 203 GTQKVYD-LRVSMTDRGAWEKRLQEIRDNDGS-FAYRAAYIPYGHTKERVHQVSAFLIRE 260 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478 NQ + D + ++ + L IL + + + + L N Sbjct: 261 NNQE----LIWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLCVKDPEDDFRYLYWN 316 Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 +A + G P + E+L R +++ L + E + Sbjct: 317 KAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDMQETYLSANGEAR 376 Query: 538 LLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 ++ + + DI+ + + +L A+ AE+ KS FLA +SHEI Sbjct: 377 IVQTLKALVPMEGRKPLLIGISWDITNLQNIEQELIRARIKAEQSDRLKSAFLANMSHEI 436 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL AI+GFS+++ Y++ I+++ +++L ++ND+LD+SKIE+G + Sbjct: 437 RTPLNAIVGFSQLL----PSAETAEEKKLYSDIINQNSDILLQLINDILDLSKIEAGTLE 492 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 P++L E ++ + E + + + D + Q+ N L+NA Sbjct: 493 YIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNAS 551 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 FT G +I + + + V+DTG+G+ +++ + F ++ + +GTGL Sbjct: 552 KFTYEG-EIRFGFGRMDKD-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGL 605 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817 GL + + +++ G+ + S KG+ P Y+ + H Sbjct: 606 GLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP-YEETGEH 645 Score = 50.0 bits (118), Expect = 0.002, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 22/170 (12%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-----------------SILEATSDGIAIINREGI 473 + + + ++ E+ L IL++ D + + N+ + Sbjct: 8 EALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEV 67 Query: 474 -ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 I + + G +D + ++ + ++ T Sbjct: 68 GIEVVSNEETNHVGISNKDFRGMRMQDMVPPEAYQNIHSNMRHAITTGTVSTAHHEL--- 124 Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582 + I L + DI+E + +L K + +K S Sbjct: 125 DFNGERHYYENRIFPL-DEEYVLIMCRDITERVATQRQLEVFKSVLDKVS 173 Score = 40.4 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 9/140 (6%) Query: 90 DAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG 145 D ++ G A K IG ++ + +LL+ Sbjct: 305 DPEDDFRYLYWNKAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDM 364 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + T G V A +P+ R G I + R K Sbjct: 365 QETYLSANGEARIVQTLKALVPMEGRKPLLIG-----ISWDITNLQNIEQELIRARIKAE 419 Query: 206 HLHEIKKGHSSVEKEKYDIF 225 +K + + Sbjct: 420 QSDRLKSAFLANMSHEIRTP 439 >gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl] gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp. Y-400-fl] Length = 523 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 88/376 (23%), Positives = 170/376 (45%), Gaps = 23/376 (6%) Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 E L +++E ++DG+ II+ I + N + +L G+ E+ + +P L Sbjct: 165 REKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRNAHG 224 Query: 509 MNHYLTEILSLDLRQTLEKITLG--STKEEKLLSLRIIIKKLPFSSCYSLT----MHDIS 562 +N L E + G +T++ + L ++ S L+ + DI+ Sbjct: 225 VNICLNECPLQRRPDLANPVVEGWITTRDGRDLFIQNRYAPQRGSHGQLLSAIANVRDIT 284 Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622 K E+ + + F++ +SHE+RTP++ I GF+E + G + Sbjct: 285 AQKMEEERQNT--------------FISVISHELRTPVSIIKGFAETMLR-PDGQFTVEQ 329 Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682 Y E I + + + DLLD+S+I +G + L V+L VS+ + + Sbjct: 330 YREALQVISEEADRLARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQV-GE 388 Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742 RI +++P + AD ++Q+ N++ NA+ ++P+GG I I + I+ V Sbjct: 389 RIEFEIRVPDDLPPVYADYERMRQVLTNLIENAVKYSPNGGVIRIGARAE-GDMAIVYVS 447 Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802 D G+G+ E + + F ++ + G+GLGL + +A+V+A+ G+ ++ S +G+ Sbjct: 448 DQGIGIPPEEQDLIFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGS 507 Query: 803 LIEIIFPLYDTSHPHD 818 PL P + Sbjct: 508 RFFFTIPLSRRQLPGE 523 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 31/327 (9%), Positives = 67/327 (20%), Gaps = 12/327 (3%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYG 145 ID + + + + G + IG +V I + N L +R + Sbjct: 184 IDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRNAHGVNICLNECPLQRRPDLANP 243 Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 W + I P + + V S Sbjct: 244 VVEGWITTRDGRDLFIQNRYAPQRGSHGQL--LSAIANVRDITAQKMEEERQNTFISVIS 301 Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265 H E Q R +V S + + + Sbjct: 302 HELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVISEEADRLARQIQDLLDVSRIAAGG 361 Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325 H + + + + + + NL Sbjct: 362 LRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDDLPPVYADYERMRQVLTNLIENA 421 Query: 326 VDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379 V P + + Y + + + + E + T L + Sbjct: 422 VKYSPNGGVIRIGARAEGDMAIVYVSDQGIGIPPEEQDLIFERFYRVDTRLRRDQPGSGL 481 Query: 380 AIKPVM-LYRSDRTCIAASARLHTIQW 405 + + + I +++ Sbjct: 482 GLFITRAIVEAHGGRIWVESQVGRGSR 508 >gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8] Length = 618 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 86/453 (18%), Positives = 175/453 (38%), Gaps = 31/453 (6%) Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEK 420 + L L + + S R I+ + P Sbjct: 177 QTRDIIQLFLQSVLLAIVIAMTIAFFLSQGLTRPIENIRQQAIRIAEG----VYDYPAHV 232 Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480 + I + + E E +L +L DG+ +R G + N Sbjct: 233 FGKDELGELALTINELADKVKDAQESTESEKQRLDGVLRHMRDGVISTDRRGRVALVNDR 292 Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540 L E + K L+ ++ + E + + +T++ I E Sbjct: 293 ALYLLNIYQEQAIGKSIVELLDLADDYSVHDLMFEDHEVKIEKTIKDIQTIIKAE----- 347 Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 +I + F + + D++E ++ + + DF++ VSHE+RTPL Sbjct: 348 FSVIRRDTGFVTGLVCVLTDVTEQEKT--------------NQERRDFVSNVSHELRTPL 393 Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660 T++ +SE + + + + I N ++ +V++LLD+SKI+ G++ L + Sbjct: 394 TSVKSYSEALLDGALQDTSLAQ--PFLEVIQLESNRMIRMVSNLLDLSKIDGGQIILQKD 451 Query: 661 PVSLDEAVSEAISLVQLYAN----EKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 V V + ++ +K I + + D + Q+ N+++NAI Sbjct: 452 LVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRDIYVDIDQDRMTQVIDNLINNAI 511 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 ++P GG+I I + + VI V D G+G++ + E + F ++ ++ G+GL Sbjct: 512 KYSPDGGKITIGLE-DNRDSVIFSVSDQGLGISQVDAEHLFERFYRVDKARSREQGGSGL 570 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GL ++K +V+ + G+ ++ S +G+ P Sbjct: 571 GLAISKEVVELHGGRIWVESIENEGSTFSFELP 603 >gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 618 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 146/247 (59%), Gaps = 3/247 (1%) Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K+ +L AK AE + KS+FLA +SHE+RTPL +IIGF+EV+++Q FG L N + + Sbjct: 368 KERTAELEIAKIHAEAANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTL-NEKQL 426 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY I S +L+++ND+LD+SKIE GK L + + V+ ++ + + A++ I Sbjct: 427 EYLKDIHDSAKHLLNLINDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKASKHGI 486 Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 + + + AD R +KQ+ N++SNA+ FTP GG + I+ + + + V D Sbjct: 487 KLDAEISKEADITVTADERKIKQVLFNLVSNAVKFTPDGGSVKITAERKED-MIEIVVED 545 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+G+ + +K +PF Q+ + + +GTGLGL L+K++V+ + GK + S KG+ Sbjct: 546 TGIGIKKEDRDKLFQPFSQLETTYTKKYQGTGLGLALSKSLVELHGGKIWCESEYGKGSR 605 Query: 804 IEIIFPL 810 FP+ Sbjct: 606 FGFSFPV 612 >gi|153840375|ref|ZP_01993042.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AQ3810] gi|149745962|gb|EDM57092.1| aerobic respiration control sensor protein ArcB [Vibrio parahaemolyticus AQ3810] Length = 683 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 22 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 81 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ S + T E+ + Sbjct: 82 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 141 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 142 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 194 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 195 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 250 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 251 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 310 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ EL+K + Q+ + + Sbjct: 311 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 370 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 371 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 416 Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%) Query: 34 FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93 E E+ K + Q + Q + + + +A G Sbjct: 17 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 75 Query: 94 YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152 + + + G +++G+ DV P + + + L Sbjct: 76 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 135 Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212 +G +L +P YS++ G GFG ++ + + Sbjct: 136 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 191 Query: 213 GHSSV 217 Sbjct: 192 HELRT 196 >gi|153834480|ref|ZP_01987147.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi HY01] gi|148869116|gb|EDL68152.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi HY01] Length = 786 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 88/405 (21%), Positives = 176/405 (43%), Gaps = 19/405 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ + EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEDDYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815 GTG+GL ++K +++ G + S G+ + P+ D + Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVDLAE 515 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + + Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales bacterium GD 1] Length = 740 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 90/431 (20%), Positives = 187/431 (43%), Gaps = 32/431 (7%) Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450 R + + + + + + + + + +++ + Sbjct: 195 RGVLEVIIPVQEQRKRYDTITDYINLTLIISGFLLVILIFIVVTYFTNLEKKRLEQLKEK 254 Query: 451 VMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508 +L +++ + + G I ++A + GY E+++ + + + P Sbjct: 255 QYKLNKSVKSFGQNVIASNTDLNGFITYASKAFCDISGYSEEELMGRSHNLIRHPDMPQE 314 Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564 + + + + +T E K + +R I + YS HDI+ Sbjct: 315 LYKEMWKSIKSG--ETWEGDIKNKNKAGEFYWVRSTIFPDYNYNKKLIGYSSIRHDITAQ 372 Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624 K K +F + +SHE+RTPL AI+GF ++ Q + + +++ Sbjct: 373 K------------------AKEEFFSNMSHELRTPLNAILGFLNILNKQ----ISDKKHL 410 Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684 EY ++ S +L+++ND+LD++KI++G+ + + E + + + +K I Sbjct: 411 EYLRHVGTSSKQLLNLINDILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNI 470 Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743 +++ ++++ + + DL + QI LN+LSNAI FTP GG I + + + + V+D Sbjct: 471 SLKSHISHDLKGVFIGDLFRISQIILNLLSNAIKFTPDGGTISLYIDYKEE-KFSIVVQD 529 Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803 TG+GM+ +K KPF Q S + GTGLGL + + +++ GK + S KG+ Sbjct: 530 TGIGMSPDVQDKIFKPFVQADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGST 589 Query: 804 IEIIFPLYDTS 814 ++ P+ S Sbjct: 590 FKVKIPMQKIS 600 Score = 57.3 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 5/108 (4%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147 D +G++ S+ G +++G + + +K TW G Sbjct: 274 TDLNGFITYASKAFCDISGYSEEELMGRSHNLIRHPDMPQELYKEMWKSIKSGETWEGDI 333 Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195 G +V + P Y+ N++ G+ I H Sbjct: 334 KNKNKAGEFYWVRSTIF--PDYNYNKKLIGYS--SIRHDITAQKAKEE 377 >gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102] Length = 657 Score = 326 bits (837), Expect = 7e-87, Method: Composition-based stats. Identities = 111/509 (21%), Positives = 198/509 (38%), Gaps = 38/509 (7%) Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST--------LLDAPKLSDNNAIKPV 384 V + Y L + V+ GL ++ KL D + + Sbjct: 9 LHVDDNEANRYIVARILQNAGFTVVEAATGVAGLKAATEHQPTLVILDVKLPDISGFEVC 68 Query: 385 MLYRSDRTC--IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442 +++ I + +++ + + Q E + + R Sbjct: 69 RQIKANPETAFIPVLHLSASFVQSQDKAEGLDSGADAYLVQPVEPIELLATVRSLLRIRR 128 Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502 + + S ++ DG+ +++ +GIIL N A++++F P +IL + Sbjct: 129 AEEAALSSAREWQSTFDSIKDGVCLVDTKGIILRCNLAITQIFCKPSHEILGCAHHNLMA 188 Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562 RQ LE + + + + L + DI+ Sbjct: 189 AELGIGDGTCFRRAKETHQRQVLEFQSTERWFAKTIDPVLDEHGTLT---GAVFILSDIT 245 Query: 563 EWKQEKNKLSHAKKIAEKE--------------SSHKSDFLARVSHEIRTPLTAIIGFSE 608 E K+ L + + K +FLA +SHE+R+PL I+G+++ Sbjct: 246 ERKRASALLQEQNDRLNQLMISLQQQTEQAQQANRIKDEFLAVLSHELRSPLNPILGWAK 305 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 +++ R + I+R+ L ++ DLLD+S+I GK++L+ PV L + Sbjct: 306 ILQTSRQDA---AKTQYALETIERNAKLQAQLIEDLLDVSRILQGKLSLNTVPVGLTFTI 362 Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728 A+ V+L A K I I+T F N ++L D ++Q+ N+LSNAI FTP GGQ+ + Sbjct: 363 KAALETVRLAAEAKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLLSNAIKFTPQGGQVEVR 422 Query: 729 TTHTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 N E + V DTG+G++ L F Q + R G GLGL + Sbjct: 423 LERIENELDTHPSEYTQISVSDTGMGISADFLPYVFDYFRQADGTTTRRFGGLGLGLAIV 482 Query: 782 KAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 + +V+ + G S +G + FP Sbjct: 483 RHLVELHGGSIQAASPGEGQGATFTVKFP 511 >gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 830 Score = 326 bits (837), Expect = 8e-87, Method: Composition-based stats. Identities = 190/821 (23%), Positives = 314/821 (38%), Gaps = 108/821 (13%) Query: 51 QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110 Q++FT + S + + F P + V G L E+S + + Sbjct: 51 QNHFTYTAFLAASAPVSDLAGQSLRFSPTEKPV--------DGLLSELS-----LLHDPI 97 Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170 + D+S + ID N+ I L+ P G +V AALP+ + Sbjct: 98 SR------ADISFLAVIDGNSRIRRLMSDGAHP-------PPAGLQDFV----AALPVNA 140 Query: 171 RNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229 +R G + V RA L + S L G + I Sbjct: 141 AHRAIVQRLGGDVYVVSVHAIAGQRASLVVLTRWDSGLLTRAHGFAPGSDLTVAIADMFH 200 Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289 V ++ + L F TI + Y +Q Sbjct: 201 GVVAASSDPAVIAMGLPLIRLETDWLAVYQELPDHGGIDF--LPAFVTIVSHAYADRQAE 258 Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349 L+ ++ L+ + +D+ + +G A Sbjct: 259 PLLRQEREQRT-VLAATLIGLFLLVLVVVALRLRQIIDQVAL-VIESVNGKQEPAFKGGD 316 Query: 350 LLTKY------------KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR--------- 388 L +S ++ L+ ++ + L + Sbjct: 317 ELLGLVRQVHTLATEVRRSRQALQSEAAEKMRLNEERILVREENARLRLLQTVTDLLRVG 376 Query: 389 --SDRTCIAA-SARLHT------------IQWNRENSLAMTFIPFEKANQFPENMPQNGI 433 R +Q + S + + A + E + +GI Sbjct: 377 VVRLGHDGPVAENRAMEEMSQTCGGLSPFVQASNRGSQDLVALDTHGAERIYELLSADGI 436 Query: 434 EPED--VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 + + V +R+ E + L + + I +G IL N A L Sbjct: 437 DHDLILVTEVTEQRRAEQMIHSLALFPAQSPYPVLRIGIDGAILHANPASEPLL------ 490 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 + + + P + +TE+L+ + E +G L + + + + Sbjct: 491 ---SEWATGMGRKVPDEWHGIITEVLATGRQLQAELPVIGRV-------LSLTLVPVKGA 540 Query: 552 SCYSLTMHDISEWKQEKNKLS------------------HAKKIAEKESSHKSDFLARVS 593 ++ D+S+ + +L+ AK+ AE S KS+FLA +S Sbjct: 541 GYVNIYATDVSDRVAAERQLADANEDLERRVEERTRDLVRAKEQAELASRSKSEFLATIS 600 Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 HE+RTPL AIIGFSEV+ FGPLGN RY EYA I +SG +L ++ND+LD+SKIE+G Sbjct: 601 HELRTPLNAIIGFSEVMAGSMFGPLGNSRYQEYAGDIVQSGRHLLAVINDILDVSKIEAG 660 Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 +M+L F PV + + A+ LV+ A + +R+ ++P I D R QI +N+LS Sbjct: 661 QMSLDFGPVDIPPVIDSAVRLVETRARANSLRLRSEVDKDLPIIDGDRRRCLQILVNLLS 720 Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773 NAI FTP GGQ+ I + ++ + L+V+DTG+GM+ E++ A++PF Q+ S + EG Sbjct: 721 NAIKFTPEGGQVTIGASRENDG-IRLKVQDTGIGMSESEIQVALEPFRQVDGSLSRQYEG 779 Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 TGLGLPLAK+MV+ + G + S +GT + PL S Sbjct: 780 TGLGLPLAKSMVELHGGSLVVNSRKGEGTEVAFWLPLNQNS 820 >gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 614 Score = 326 bits (837), Expect = 8e-87, Method: Composition-based stats. Identities = 97/432 (22%), Positives = 179/432 (41%), Gaps = 33/432 (7%) Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474 N E I E + + ++ ++ + L ++ T + + + Sbjct: 46 VHVLPVRNDDGEIFAGMTITQEITERKQSELALQNALQLLNLHIDTTPLAVVQWDCHLCV 105 Query: 475 LSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532 + A K+FG+ E+++ K + + + + +LS Q ++ Sbjct: 106 TRWSSAAEKIFGWLAEEVIGKYIQDLHIVYEEDMTAVAEVSDRLLSGQEAQIIQY-NRNY 164 Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA-------------- 574 TK+ +++ + + D++E Q + L + Sbjct: 165 TKDGRVIYCEWYNSSITNEEGSVTSVLSLVLDVTERIQAEKALRQSELMVTEERAQALER 224 Query: 575 ----KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630 + E+ S K +FLA VSHE+R+PL I+G+S +++ ++ P + + I Sbjct: 225 ERAARIELERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESI 281 Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690 +R+ ++ DLLDIS+I G + L P L + A+ V+ AN K I I + Sbjct: 282 ERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRL 341 Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750 +I + AD ++Q+ N+LSNA+ FTP GG++ I V ++V DTG G++ Sbjct: 342 NFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETN-VQIQVIDTGTGISP 400 Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809 L F Q + G GLGL + + +V+ + GK + S +G + P Sbjct: 401 EFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLP 460 Query: 810 L---YDTSHPHD 818 L Y T P + Sbjct: 461 LLATYSTLTPEE 472 >gi|269960268|ref|ZP_06174643.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi 1DA3] gi|269835075|gb|EEZ89159.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi 1DA3] Length = 786 Score = 326 bits (837), Expect = 8e-87, Method: Composition-based stats. Identities = 88/406 (21%), Positives = 176/406 (43%), Gaps = 19/406 (4%) Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478 + +E E + ++ L S ++A+ D I N +G+ N Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181 Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538 RA+ +L G ++ + + ++ + + T E+ + Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241 Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 LR + DI+E K+ + L EK S K+ F++ +SHE+ Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294 Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 RTPL I+G S ++ + + ++ I+ S + +I ND++D+ K + K+ Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TDEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350 Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715 L P++ ++ V+E S+ L A +K + +++P+ I D ++Q+ N++SNA Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410 Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772 + FT GG + +S + +I+ V DTG+G+ + EL+K + Q+ + + Sbjct: 411 MKFTKEGGVVMTVSADVEEDYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470 Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816 GTG+GL ++K +++ G + S G+ + P+ + P Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELEEP 516 Score = 47.3 bits (111), Expect = 0.010, Method: Composition-based stats. Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%) Query: 90 DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148 +A G + + + G +++G+ DV + + + + Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQW 231 Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208 L +G +L +P YS++ G GFG ++ + + Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287 Query: 209 EIKKGHSSV 217 Sbjct: 288 STISHELRT 296 >gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC 367] gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus brevis ATCC 367] Length = 618 Score = 326 bits (837), Expect = 8e-87, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 160/400 (40%), Gaps = 33/400 (8%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477 + + V + E E +L S++ +DG+ +R G + Sbjct: 230 VHVYGNDELGQLASAVNNLSVRVEEAQESTESERRRLDSVMAHMTDGVIATDRRGNVTII 289 Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537 N S + +D + K L+ + L + L + Sbjct: 290 NETASSFLDHEPDDAVGKSILDLLDIRDDYTLRELLED------PDDLVLDFSTKEHD-L 342 Query: 538 LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 +L + + S +HD++E ++ + +F++ VSHE Sbjct: 343 ILQAYFSLIQRESGFISGLVCVLHDVTEQQKI--------------DQARREFVSNVSHE 388 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGK 654 +RTPLT++ + E + G +P+ ++ + ++ ++NDLL +S+++SG Sbjct: 389 LRTPLTSVRSYIEALSE---GAWKDPKVAPDFLKVTQEETDRMIRMINDLLTLSRMDSGT 445 Query: 655 MNLHFEPVSLDEAVSEAISLVQLYAN-----EKRILIRTSFANNIPRILADLRSVKQIAL 709 + E V+L+E + + + EK I+ F + D Q+ Sbjct: 446 QKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDFTKRDLWVEIDTDRFTQVLD 505 Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 N+++NAI ++P GG + ++ VIL V D G+G+ ++ + F ++ ++ Sbjct: 506 NLMNNAIKYSPDGGVVTARL-LETHNNVILSVSDQGLGIPRADIPRIFDRFYRVDKARSR 564 Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL +++ +V G+ ++ S +G+ I P Sbjct: 565 AQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLP 604 >gi|163790939|ref|ZP_02185362.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7] gi|159873781|gb|EDP67862.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7] Length = 614 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 92/459 (20%), Positives = 180/459 (39%), Gaps = 32/459 (6%) Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTF 415 E ++ + L + L+ S TIQ + Sbjct: 172 ESVYEQISEITLIFLNSSLVAVAVTVILALFISRAITKPITEMTQQTIQMADGDYSGQ-- 229 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + ++ + I + E E +L S+L +DG+ +R GII+ Sbjct: 230 --VKVYSKDELGILSTAINDLSTKVEEAQETTESERRRLNSVLTHMTDGVIATDRRGIII 287 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535 N ++ E L L+ + + L D+ + T Sbjct: 288 IINDKAMEMLNISQEMALGVSILKVLKIDKEYTLRKLLEN--EDDMLFDFSTEEMLVTLR 345 Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595 + +I ++ F S +HD+++ ++ +N+ + +F++ VSHE Sbjct: 346 GEF---TLIQRETGFISGIVCVLHDVTKQEKIENE--------------RKEFVSNVSHE 388 Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 +RTPLT++ + E + + + ++ + ++ ++ DLL++S+++S K Sbjct: 389 LRTPLTSMRSYLEALLDGAW--KDPEIAPQFLEVTQEETDRMIRMIKDLLELSRMDSNKS 446 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANE-----KRILIRTSFANNIPRILADLRSVKQIALN 710 L E ++++E I ++ K I+ F + + D + Q+ N Sbjct: 447 VLDLEYLNVNELFDHVIKRFEMMLQSSDKTMKEFSIKREFTKSQLWVEVDADKMIQVLDN 506 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 I++NAI ++P GG I +N VI + D G+G+ +L F ++ ++ Sbjct: 507 IMNNAIKYSPDGGTITCGL-VETNTSVIFSISDEGLGIPKRDLANVFDRFFRVDKARARS 565 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 GTGLGL ++K +V + GK + ST KGT I P Sbjct: 566 MGGTGLGLAISKEVVQKHKGKIWAESTEGKGTTFYISLP 604 >gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555] gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016] gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555] gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 575 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 81/359 (22%), Positives = 158/359 (44%), Gaps = 30/359 (8%) Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 +L +IL++ +G+ ++ I+ N K+FG + I + + Sbjct: 237 NKLEAILKSMDNGVIAVDTSYKIIMINPYAKKIFGISKDVIGENLMDSIRDFELEDIFKS 296 Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 E + + + E+ T I + DI++ K+ + Sbjct: 297 VKKEYKEIRILRPKERDLRIKT---------DYIINSNEKIGIVAVVQDITDIKRLE--- 344 Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631 + +S F+A VSHE++TPLT+I GF+E +K ++ N ID Sbjct: 345 -----------NMRSQFVANVSHELKTPLTSIKGFAETLK----YVEDVENRNKFLNIID 389 Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691 + ++ND+L +S IES +M+ E + ++ + + +++ +A++K I + Sbjct: 390 DEAERLTRLINDILTLSHIESNEMD-KIEFIDINGIIDDVCYMMKPFADKKHIK-IKKIS 447 Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751 +P I D KQ+ +N++ NAI +T +GG + + T N+ + + V D GVG++ Sbjct: 448 CEMPDIWGDADRFKQMVINLVDNAIKYTNNGGWVKVGTAFQENDCL-IWVEDNGVGISKE 506 Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 E+ + F ++ ++ GTGLGL + K + G + S KG+ + P+ Sbjct: 507 HQERLFERFYRVDKARSRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIPI 565 >gi|298488282|ref|ZP_07006315.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157221|gb|EFH98308.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1200 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 125/749 (16%), Positives = 264/749 (35%), Gaps = 47/749 (6%) Query: 75 VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132 F+ V F++ + D L I+ L + +++G L D Sbjct: 239 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 294 Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191 L G W ++ ++ + IY +N ++ G + ++R+ Sbjct: 295 RIRL-------TGAERRWLLKHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 346 Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251 + + + + + ++ G + + + ++ L + + + Sbjct: 347 GLQFVHQEVPSTQQSIEMLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVRS 403 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311 + L + +LP + L++ + + R + Sbjct: 404 ERSSRVSLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLLDTY 446 Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E+ + + + +++ G L A S I+ L +L+ Sbjct: 447 DQARALVESGVADATIQNEVGAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 505 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 A + + + + W R + + + Sbjct: 506 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 560 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 ++ + +R++ ++ ++ + + I + + +G ++S NR+ + G E Sbjct: 561 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 620 Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 + + T + + M+ +L ++ S K + + Sbjct: 621 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 680 Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608 DI+E K+ + +L A ++A + + KS FLA +SHEIRTP+ AIIG E Sbjct: 681 GQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 740 Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668 + P RS ++ ++ + LD+++IE+G M L SL Sbjct: 741 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 798 Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727 I L A EK + +R F+ D ++Q+ N+L NA+ FT G ++ Sbjct: 799 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 858 Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787 + V + ++D+G G+ ++ +PF Q + G+GLGL + + +V Sbjct: 859 VAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQL 918 Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G + S+P +GTL+ I PL S P Sbjct: 919 MKGDISLHSSPGEGTLVNIDLPLVRVSEP 947 >gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1070 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 126/791 (15%), Positives = 257/791 (32%), Gaps = 85/791 (10%) Query: 86 TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTW 143 + G ++ + K + + + D+ L+ DP + +LL+ Sbjct: 153 IYQSTPGGTFLSVNASMAKILRYDDPADLMASIKDIGHDLYADPCDRKRYMELLEEHIRV 212 Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202 G +T + +G+ + + L + I G + D+ Sbjct: 213 MGFETQVRRKDGSL--IWVTLNSTLIRDAGANRPCL--IGTMEDISTRKRFELSLIESDQ 268 Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-----------------------PPPHLRMKNK 239 +F +L + + + I P ++ Sbjct: 269 RFRNLLQQISCIAVSLDNQSRIVFSNPFLHQLTGWSEAELNGQNWFDVFLPAGQRETMSR 328 Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED---------------FHTINLNQYT 284 V + A + + I + Sbjct: 329 VLTPHPTAATHGSESMDTEIRTRQGALRLIRWNTVPDINVQGEIIGVTCLGVDITAIRMA 388 Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--------- 335 + + Q +S + + P + + E +D + + Sbjct: 389 RDTLSKSAQMHSMRLRIDDAAHSTPDFATLMRTVHEILGEVIDAKNLITALINTDKNSLE 448 Query: 336 --YSHGNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388 Y + + + + + + G + +L + ++ + L Sbjct: 449 FPYWVDEMTDVSEAAPRIDDLNDPENRRLTLELLRGNIPNILSSSDMTALAEAGKIRLVG 508 Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448 + + P + + + + R ++ Sbjct: 509 VIPQSWMGVPLKVRGKGIGALIVQNYATPKHYTRNDLDILLEVSEQIALAIERQRHDELS 568 Query: 449 IEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503 + I G+ I + + I+ S N A +L +E+ FT Sbjct: 569 QTAEE---IFHDIPSGLFIYKYREPD-QLILESANPAALRLIDKRLEEARGTLFTDIWP- 623 Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 + + L E + + ++ D++E Sbjct: 624 --RATLQSNYLRCLHTKEPFDKEAHLYEDERIRGYFRIHAFPLP---GEKVAVAFEDVTE 678 Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623 +Q + L AK+IAE + KS+FLA +SHE+RTPL I+G ++ P Sbjct: 679 RQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGMLQLAMQSEVPP----EL 734 Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683 +Y S +L ++ND+LD +K+++GKM + SLD+ +S+A++ + A +K+ Sbjct: 735 EDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQAVNFFRALAMDKK 794 Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVIL 739 I + S +I R + D ++QI N++ NA+ FT +G + + ++ Sbjct: 795 ISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDTGS-VTLEAWPVGEQGDATRILF 853 Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799 VRD G+G+ +L + F Q+ + R +GTGLGLP+ K +V G + S Sbjct: 854 AVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRLVTLMGGNISVESMEG 913 Query: 800 KGTLIEIIFPL 810 +GT I + PL Sbjct: 914 EGTTIFFVLPL 924 Score = 103 bits (258), Expect = 1e-19, Method: Composition-based stats. Identities = 50/515 (9%), Positives = 139/515 (26%), Gaps = 34/515 (6%) Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255 +R S H+ G + E+Y + + + L + Sbjct: 16 RAQRHAGIGSFEHDFSSGATFWSDEQYRLLGFSPDETLPSLDRFLELLDPRDRDRFLRKV 75 Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315 + + + + Q + S + ++ + Sbjct: 76 GVCFTKRRELRTEVRYTPKSGKLRTAQIRAEFEPDESGRIRVISGTFQDVTERRAVQSAL 135 Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374 + E + + G N S + +Y D+ + + Sbjct: 136 RQSEAGYRTIFENALEGIYQSTPGGTFLSVNASMAKILRYDDPADL--MASIKDIGHDLY 193 Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434 + + + L + ++ + + +T + G Sbjct: 194 ADPCDRKRYMELLEEHIRVMGFE---TQVRRKDGSLIWVTLNSTLIRDAGANRPCLIGTM 250 Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494 + + + + + ++L+ S ++ + I+ +N + +L G+ ++ Sbjct: 251 EDISTRKRFELSLIESDQRFRNLLQQISCIAVSLDNQSRIVFSNPFLHQLTGWSEAELNG 310 Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSC 553 + + + E T T++ L +R Sbjct: 311 QNWFDVFLPAGQRETMSRVLTPHPTAATHGSESMDTEIRTRQGALRLIRWNTVPDINVQG 370 Query: 554 YSL----TMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARV--SHEIRTPLT 601 + DI+ + ++ ++ + + + DF + HEI L Sbjct: 371 EIIGVTCLGVDITAIRMARDTLSKSAQMHSMRLRIDDAAHSTPDFATLMRTVHEI---LG 427 Query: 602 AII---GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658 +I + N L P +++ + + ++DL D E+ ++ L Sbjct: 428 EVIDAKNLITALINTDKNSLEFPYWVDEMTDVSEAAPR----IDDLND---PENRRLTLE 480 Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693 ++ +S S + A +I + + Sbjct: 481 LLRGNIPNILSS--SDMTALAEAGKIRLVGVIPQS 513 Score = 93.6 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 32/282 (11%), Positives = 69/282 (24%), Gaps = 10/282 (3%) Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368 + + I F + + + L + + + Sbjct: 2 PATISLQRQLDHLNRAQRHAGIGSFEHDFSSGATFWSDEQYRLLGFSPDETLPSLDRFLE 61 Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428 LLD V + + ++ Sbjct: 62 LLDPRDRDRFLRKVGVCFTKRRELRTEV-----RYTPKSGKLRTAQIRAEFEPDESGRIR 116 Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488 +G + + R + + +I E +GI G LS N +++K+ Y Sbjct: 117 VISGTFQDVTERRAVQSALRQSEAGYRTIFENALEGIYQSTPGGTFLSVNASMAKILRYD 176 Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548 L + L + + + T K+ L+ + + + Sbjct: 177 DPADLMASIKDIGHDLYADPCDRKRYMELLEEHIRVMGFETQVRRKDGSLIWVTLNSTLI 236 Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 + TM DIS K+ + L + + S Sbjct: 237 RDAGANRPCLIGTMEDISTRKRFELSLIESDQRFRNLLQQIS 278 >gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus aureus subsp. aureus ED133] Length = 554 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 169/398 (42%), Gaps = 33/398 (8%) Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475 + D+ R+ K E + +L + +E I +I+R G I+ Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237 Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534 N+A + F + + + E ++ + + Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291 Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591 K + + + MHDI+ KQ + + + +F+A Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337 Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650 VSHE++TP+T+I GF+E + + G +P+ ++ + N I + N + +V DLLD+S I Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDPQSLDMFLNIILKESNRIESLVTDLLDLSHI 394 Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710 E L + ++L + I + AN+K I I T ++ + A + Q+ N Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452 Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 +L+NAI+++ G I + + + VI V+D G+G+ + ++ + F ++ ++ Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 GTGLGL + K +V+A+ G + S KG+ ++I Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549 >gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas neptunium ATCC 15444] Length = 655 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 116/507 (22%), Positives = 198/507 (39%), Gaps = 37/507 (7%) Query: 323 PETVDKCPIPFFV-----YSHGNLFY-----ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372 D P+ G + AN L + + G+ Sbjct: 3 ARLFDLLPVVVCEIAPVRAPDGTIIDLEWIDAN----RLMNESILPNGGSIVGMRVFEFD 58 Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432 P D+ K V+ I L + P E Sbjct: 59 PAYRDSEMTKNVIQVIETGEPITYITGLGRAAKMLGKVMKTVITPTE--------FGALA 110 Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 E + + + + GI + +RE I N A+ +L GY E++ Sbjct: 111 CSHEVTELAEERDAALKRFQLARAACDHAIHGIVVTDRESRIHYVNHAICELIGYSEEEL 170 Query: 493 LRKPFTVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549 L K + + + + + T++ + ++ Sbjct: 171 LGKDVGILFGVKAFQPQKALGNQVVSEIESGKLIRHISDAEAYTRDGVKIRVQASTSSTH 230 Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605 + + D+ E +++ ++L A AE+ + KS+FLA +SHEIRTPL ++G Sbjct: 231 WGEDDDMVFITYIRDVREERRKAHELRDALNRAEQATRLKSEFLANMSHEIRTPLNGVLG 290 Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665 ++V+ + + E I SGN ++ ++ND+LD+SKIE+G+M+L P L Sbjct: 291 MAQVLAHGKL----TEAQAEQVGVILDSGNTLMVLLNDILDLSKIEAGRMDLSPVPGDLR 346 Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724 +S L + ANEK I IR ++P R+L D V+Q N+LSNAI FT G Sbjct: 347 HKLSGLFKLHEAAANEKGIGIRLFVDPSVPSRLLFDPVRVRQCVSNLLSNAIKFTSQGEV 406 Query: 725 IIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 +++ T+ + VI+ V DTGVG+ ++++ + F Q S + GTGLGL + Sbjct: 407 MLVVTSEPVQSGAHRVIMHVSDTGVGIAADKVDRIFESFAQEDGSTTRKFGGTGLGLSIT 466 Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808 + + G S KG++ + F Sbjct: 467 RRLARMMGGDVTAVSQVGKGSIFTLKF 493 Score = 43.5 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 39/140 (27%), Gaps = 4/140 (2%) Query: 89 IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148 D + ++ + + IG +++G + + + P +G+ + + GK Sbjct: 146 TDRESRIHYVNHAICELIGYSEEELLGKDVGILFGVKAFQPQKALGNQVVSE-IESGKLI 204 Query: 149 LWPIEGTNL---YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205 + V I + A + E + R + + + Sbjct: 205 RHISDAEAYTRDGVKIRVQASTSSTHWGEDDDMVFITYIRDVREERRKAHELRDALNRAE 264 Query: 206 HLHEIKKGHSSVEKEKYDIF 225 +K + + Sbjct: 265 QATRLKSEFLANMSHEIRTP 284 Score = 39.6 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 13/147 (8%), Positives = 30/147 (20%), Gaps = 5/147 (3%) Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367 + L D V + Y N + L Y + + G+ Sbjct: 119 AEERDAALKRFQLARAACDHAIHGIVVTDRESRIHYVNHAICELIGYSEEELLGKDVGI- 177 Query: 368 TLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426 L V+ I + + + Sbjct: 178 -LFGVKAFQPQKALGNQVVSEIESGKLIRHISDAEAYTRDGVKIRVQASTSSTHW-GEDD 235 Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ 453 +M + + R ++ + + Sbjct: 236 DMVFITYIRDVREERRKAHELRDALNR 262 >gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM 18053] Length = 868 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 111/482 (23%), Positives = 196/482 (40%), Gaps = 27/482 (5%) Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTF 415 I G + + + + L + + + + + Sbjct: 132 IYRTQGSEPAFAKIQEGEGIRLNQL-LTAKIDQIEDYENHNLDQRRKLVSDTQQNSILFI 190 Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 + + + + R+ + +++ + LEA DG+ +IN E I Sbjct: 191 LLTGAVGFILTILSIIFLNLDKRKQRLLQNEIKERERTVSQYLEAIPDGVMVINSERKIE 250 Query: 476 STNRAVSKLFGYPVE-----DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530 N + ++ G E + + + + + L + Sbjct: 251 LINESGREILGVDGERPATLEEQVTRIKLLDPTRYHVRFSADTLPVARALQGEKLTGNKI 310 Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586 K +K+ L ++ + DI+E + L A+ +AEK K Sbjct: 311 DLVKNDKIYHLETSVQPVIGLDGRIKSAITVFRDITERANYEATLEKARSLAEKSVRVKD 370 Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 FL+ VSHEIRTPL AIIGF+ ++ G + + + EY YI +G +L+++ND+LD Sbjct: 371 IFLSNVSHEIRTPLNAIIGFTNLLM----GEVTDQKSQEYVGYIQYAGKNLLELINDILD 426 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705 SKIE+G+++L PVS+ E E +++ A EK I+ A+ +P I D + Sbjct: 427 FSKIEAGQVHLEKAPVSIRELADEISAIMHHRAVEKGIVYEALLADGLPEFIETDKLRLT 486 Query: 706 QIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760 QI LN+ NA+ FT G + + + + V+DTGVG+ +L++ F Sbjct: 487 QILLNVCGNAVKFTEKGS-VKLRVAPIGEPLNDVQNIRFEVKDTGVGIPKDKLKEVFNRF 545 Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHD 818 Q S GTGLGL + K++V G + S +GT+ + FP + + + HD Sbjct: 546 VQATESTTRVFGGTGLGLSIVKSLVQLFEGTLNLESELGQGTVFTMDFPFRIVNDAGLHD 605 Query: 819 CI 820 I Sbjct: 606 DI 607 Score = 40.0 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 5/152 (3%) Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKY--KSVDD 359 L R L E E + ++ P V + + N S + + Sbjct: 210 LDKRKQRLLQNEIKERERTVSQYLEAIPDGVMVINSERKIELINESGREILGVDGERPAT 269 Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419 +E LLD + + + + R+ + ++ ++ + + Sbjct: 270 LEEQVTRIKLLDPTRYHVRFSADTLPVARALQGEKLTGNKIDLVKND--KIYHLETSVQP 327 Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451 + + + + +E Sbjct: 328 VIGLDGRIKSAITVFRDITERANYEATLEKAR 359 >gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator hybrid protein [Rhizobium etli Kim 5] Length = 590 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 104/430 (24%), Positives = 185/430 (43%), Gaps = 17/430 (3%) Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454 A + W S+ + + + + + +E + Sbjct: 2 AEEPEPIEVGWAGGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMM 61 Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPS-VMNHY 512 A S G+AI+ ++GII +N A++ + P I + + E + Sbjct: 62 RDATHAMSQGLAIV-QDGIIRMSNEAMADILQIPAHYIAAGQGWLGMFEFCAARGDFHDA 120 Query: 513 LTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569 EIL + T+ E+ +++ + + D++E K + Sbjct: 121 AAEILQEWRANIAARQPISTVFHVAGERWVNMDATVS---TGQHWVALFTDVTELKSREE 177 Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629 +L AE KS+FLA +SHEIRTP+ ++G +E++ R + + Sbjct: 178 ELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT----RQKTFIDI 233 Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689 I +SGN +L I+ND+LD SKI++G+M L + EAV + +L+ +A EK I + Sbjct: 234 IVKSGNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAAEKNIELLGR 293 Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTG 745 A ++P ++ D +QI N++ NA+ FT G + + E++ +R+ DTG Sbjct: 294 AAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEIMANIRIEDTG 353 Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805 +G+ + +LE F Q+ S R EGTGLGL + +VD G + S KG++ Sbjct: 354 IGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGKGSVFT 413 Query: 806 IIFPLYDTSH 815 + P + Sbjct: 414 VKLPFAVAAA 423 >gi|302344236|ref|YP_003808765.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] gi|301640849|gb|ADK86171.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075] Length = 975 Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats. Identities = 107/710 (15%), Positives = 222/710 (31%), Gaps = 57/710 (8%) Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196 L+R+ + + + + + G G + +R Sbjct: 152 LERRADAIDLQAQRHVMELSRRLDLQFGLAVV--AATLLLGLVGVAVYLADRRRIALEDD 209 Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAH 249 + + +F E P + + Sbjct: 210 LRHSETRFRLAMEATSDGLWDWNVASGEVYYSPGYWRMLGYDPDRSGQRIQDWSDLLHPD 269 Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-----KESFEYLS 304 + + + + + ++ + + ++ Sbjct: 270 DRALATRTNQDCVENRVPGFEIEFRARAADGAWRWILGRGKAVERAADGLALRIIGTHVD 329 Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363 + E VD+ FF+ G + N + + Y+ + + +A Sbjct: 330 ITARKQAETTLRDSETRFRSLVDQAADAFFLTDAQGRIQDVNRAACAILAYERDELLAMA 389 Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423 D + + + R + + L + + Sbjct: 390 IA-----DIDPAMAGGRYEELWRRLTPGHGQRFETRH---RKKDGSLLPVELS--VGLLE 439 Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483 + + + ++ + ++ ++ ++ ATSD + +++ + IL+ N ++ Sbjct: 440 VGGQRLAQSLARDISERKLAEERIRESSRRITALFNATSDSVILLDPDCTILAINEHGAR 499 Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543 G ED++ + L T + + + IL E+ G ++ + Sbjct: 500 RRGLRPEDLVGQSLCERLPPETARIRSAKVEHILRTGQPTVFEEDRDGRHYMIRMFPV-- 557 Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLT 601 + + DI+E KQ + + + + V+H+ L Sbjct: 558 -PGADGEVAQIASFSRDITESKQAEAEKVKLEGQLMQARKMEAIGVMAGGVAHDFNNILG 616 Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661 AI+G++E+ NP I ++G +V +L S+ K+ + P Sbjct: 617 AILGYAEMALQDAKTKRANPAD---LEQIVKAGERGKQLVRQILTFSR----KVEVDLRP 669 Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721 + L++AVS+A L++ I + + I AD ++QI LN+ NA P Sbjct: 670 LDLNQAVSQAAQLLEKTIPR-MIGLELELIRRLRPINADANQLEQILLNLGVNAADAMPD 728 Query: 722 GGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767 GG + I T + S + V L V DTG GM +E+ +PF Sbjct: 729 GGLLRIRTENVVVENRSCLACGRTFSGQYVSLSVSDTGQGMDRQTIERIFEPFFTTKP-- 786 Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816 +G+GTGLGL +V + G S +GT + FP L S P Sbjct: 787 --KGKGTGLGLATVYGIVLGHGGHIDCHSELGQGTTFTVFFPALQSQSTP 834 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 46/398 (11%), Positives = 109/398 (27%), Gaps = 11/398 (2%) Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDD 252 AL ++ F + + G E++ R KN + + A + Sbjct: 89 VALLRQALASFEDALQRQAGVEGQTAEEFRHKVDAFDASLERWKNAGQAKAGQAVALRVA 148 Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312 E+ ++ E ++L L + YL+ R +L Sbjct: 149 FNDLERRADAIDLQAQRHVMELSRRLDLQFGLAVVAATLLLGLVGVA-VYLADRRRIALE 207 Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371 E ++ + ++ + Y +P + + Y + S LL Sbjct: 208 DDLRHSETRFRLAMEATSDGLWDWNVASGEVYYSPGYWRMLGYDPDRSGQRIQDWSDLLH 267 Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431 + + + + + + + Sbjct: 268 PDDRALATRTNQDCV---ENRVPGFEIEFRARAADGAWRWILGRGKAVERAADGLALRII 324 Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G + + + + + S+++ +D + + +G I NRA + Y ++ Sbjct: 325 GTHVDITARKQAETTLRDSETRFRSLVDQAADAFFLTDAQGRIQDVNRAACAILAYERDE 384 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551 +L + ++ T K+ LL + + + L Sbjct: 385 LLAMAIADIDPAMAGGRYEELWRRLTPGHGQR---FETRHRKKDGSLLPVELSVGLLEVG 441 Query: 552 SCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587 DISE K + ++ + + + SD Sbjct: 442 GQRLAQSLARDISERKLAEERIRESSRRITALFNATSD 479 Score = 78.5 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 31/411 (7%), Positives = 77/411 (18%), Gaps = 36/411 (8%) Query: 96 KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153 S + +G + D+ + Sbjct: 238 VYYSPGYWRMLGYDPDRSGQRIQDWSDLLHPDDRALATRTNQDCVENRVPGFEIEFRARA 297 Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213 + I + + R G + + +F L + Sbjct: 298 ADGAWRWILGRGKAVERAADGLA-LRIIGTHVDITARKQAETTLRDSETRFRSLVDQAAD 356 Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEKYPLLTSEESS 268 + + I + + L A + L Sbjct: 357 AFFLTDAQGRIQDVNRAACAILAYERDELLAMAIADIDPAMAGGRYEELWRRLTPGHGQR 416 Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328 + +L + E + Sbjct: 417 FETRHRKKDGSLLPVELSVGLLEVGGQRLAQSLARDISERKLAEERIRESSRRITALFNA 476 Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387 + + N + D + L L +A +L Sbjct: 477 TSDSVILLDPDCTILAINEHGARRRGLRPEDLVGQ--SLCERLPPETARIRSAKVEHILR 534 Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK- 446 T + P A+ E + +++ + + Sbjct: 535 TGQPTVFEED--------RDGRHYMIRMFPVPGAD--GEVAQIASFSRDITESKQAEAEK 584 Query: 447 --ME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492 +E ++ ++ +I G+ G+ N + + GY + Sbjct: 585 VKLEGQLMQARKMEAI------GVM---AGGVAHDFNNILGAILGYAEMAL 626 Score = 71.2 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 52/439 (11%), Positives = 116/439 (26%), Gaps = 30/439 (6%) Query: 56 DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115 D + T DSE F F + DA G +++++ + +++ Sbjct: 329 DITARKQAETTLRDSETRFRSLVDQAADAF-FLTDAQGRIQDVNRAACAILAYERDELLA 387 Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175 M + D+ + + L + +T +G+ +P++L+ + E Sbjct: 388 MAIADIDPAMAGGRYEELWRRLTPGHGQRFETRHRKKDGSL--LPVELSVGLL-----EV 440 Query: 176 SGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234 G R + + ++ + L + I + Sbjct: 441 GGQRLAQSLARDISERKLAEERIRESSRRITALFNATSDSVILLDPDCTILAINEH-GAR 499 Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294 R + L + +T + E Q + + + Sbjct: 500 RRGLRPEDLVGQSLCERLPPETARIRSAKVEHILRTGQPTVFEEDRDGRHYMIRMFPVPG 559 Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLT 352 E + S + S + + + + V + G N + Sbjct: 560 ADGEVAQIASFSRDITESKQAEAEKVKLEGQLMQARKMEAIGVMAGGVAHDFNNILGAIL 619 Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412 Y + L DA N A ++ +R L + + Sbjct: 620 GYAEM----------ALQDAKTKRANPADLEQIVKAGERGKQLVRQILTFSRKVEVDLRP 669 Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------EATSDG 464 + + +++ R + + QL IL +A DG Sbjct: 670 LDLNQAVSQAAQLLEKTIPRMIGLELELIRRLRPINADANQLEQILLNLGVNAADAMPDG 729 Query: 465 IAIINREGIILSTNRAVSK 483 + R ++ NR+ Sbjct: 730 GLLRIRTENVVVENRSCLA 748 >gi|229151308|ref|ZP_04279513.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550] gi|228632153|gb|EEK88777.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550] Length = 801 Score = 326 bits (836), Expect = 9e-87, Method: Composition-based stats. Identities = 103/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%) Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351 + E + + + + T E ++ G++ AN ++ + Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353 Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410 + S + I P + D + + + T + RL T++ + + Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405 Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463 L ++ + + + I + + + +R+ + M+ +++E +D Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465 Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 + + +N + + N + FGY E++L F+ + Q++ ++ L +I Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 TL+ + T + + + L + DI+E + + L ++K+A Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584 Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638 ++HEI PLTA+ GF +++K+ N Y N + + Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634 Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698 I + + ++K + K+ + + + + + L+Q A I IR IP I Sbjct: 635 SITTEFMAVAKPQVVKIKPN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 690 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + +KQ+ +NIL NAI P GG+I+I N +V +R D G G+ + + Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750 Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF I+ EG GLGL + +++ + GK +I S KGT +E+ P+ Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796 Score = 108 bits (269), Expect = 5e-21, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%) Query: 313 AYFDEGENL