RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal
transduction histidine kinase [Candidatus Liberibacter asiaticus str.
psy62]
(820 letters)
>gnl|CDD|163083 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This
protein, TorS, is part of a regulatory system for the
torCAD operon that encodes the pterin molybdenum
cofactor-containing enzyme trimethylamine-N-oxide (TMAO)
reductase (TorA), a cognate chaperone (TorD), and a
penta-haem cytochrome (TorC). TorS works together with
the inducer-binding protein TorT and the response
regulator TorR. TorS contains histidine kinase ATPase
(pfam02518), HAMP (pfam00672), phosphoacceptor
(pfam00512), and phosphotransfer (pfam01627) domains and
a response regulator receiver domain (pfam00072).
Length = 968
Score = 165 bits (420), Expect = 4e-41
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 8/230 (3%)
Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
A+ AE+ + KS FLA +SHEIRTPL I+G E++ + + +Y I+RS
Sbjct: 453 ARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGL----TSQQQQYLQVINRS 508
Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
G +LDI+ND+LD SKIE+G +++ P L+ + + L+ A K I +R +
Sbjct: 509 GESLLDILNDILDYSKIEAGHLSISPRPFDLNALLDDVHHLMVSRAQLKGIQLRLNIPEQ 568
Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
+P D ++Q+ +N++ NAI FT G +++ + + ++ V DTG G+ E
Sbjct: 569 LPNWWQGDGPRIRQVLINLVGNAIKFT-DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEE 627
Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
F Q ++ GTGLGL +++ +V+A G+ + S G+
Sbjct: 628 QATLFDAFTQADGRRRSG--GTGLGLAISQRLVEAMDGELGVESELGVGS 675
>gnl|CDD|185245 PRK15347, PRK15347, two component system sensor kinase SsrA;
Provisional.
Length = 921
Score = 154 bits (391), Expect = 9e-38
Identities = 84/251 (33%), Positives = 136/251 (54%), Gaps = 15/251 (5%)
Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
L+ AK+ AE+ + KS+ L +SHEIRTPL ++G E+++N PL ++ A+
Sbjct: 384 LAEAKQRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQN---TPL-TAEQMDLADTA 439
Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
+ +L I+N+LLD S+IESG+M L E +L + +A+ +Q A K + +RT
Sbjct: 440 RQCTLSLLAIINNLLDFSRIESGQMTLSLEETALLPLLDQAMLTIQGPAQSKSLTLRTFV 499
Query: 691 ANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
++P L D ++QI +N+L NA+ FT +GG I +++ V DTG G+
Sbjct: 500 GAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGG--IRLRVKRHEQQLCFTVEDTGCGID 557
Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM--GKFYIFSTPAKGTLIEII 807
+ ++ PF Q Q GTGLGL +A ++ A M G+ +FSTP G+ ++
Sbjct: 558 IQQQQQIFTPFYQADTHSQ----GTGLGLTIASSL--AKMMGGELTLFSTPGVGSCFSLV 611
Query: 808 FPLYDTSHPHD 818
PL + + P
Sbjct: 612 LPLNEYAPPEP 622
>gnl|CDD|183098 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional.
Length = 607
Score = 152 bits (386), Expect = 3e-37
Identities = 100/364 (27%), Positives = 175/364 (48%), Gaps = 39/364 (10%)
Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
ILE+ +DG+ I+R+G I + N A + G +++ KP++ NTP L +
Sbjct: 267 ILESIADGVIAIDRQGKITTMNPAAEVITGLQRHELVGKPYSELFPPNTP--FASPLLDT 324
Query: 517 L-----SLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
L +DL + G + +L SL + + D++E K+ +
Sbjct: 325 LEHGTEHVDLEISFP----GRDRTIELSVSTSLLHNTHGEMIGAL--VIFSDLTERKRLQ 378
Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
+++ +++A + +A V+HEIR PLTAI G+ ++ + Q P + Y+
Sbjct: 379 RRVARQERLAAL-----GELVAGVAHEIRNPLTAIRGYVQIWRQQTSDP-PSQEYLSVVL 432
Query: 628 NYIDRSGNLVLD-IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
+DR L+ +++ LL+ S+ + ++PVSL+ V E + L Q + R+
Sbjct: 433 REVDR-----LNKVIDQLLEFSRPRESQ----WQPVSLNALVEEVLQLFQTAGVQARVDF 483
Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
T N +P I AD +KQ+ LNIL NA+ + G+I I T S+ +V + + D G
Sbjct: 484 ETELDNELPPIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGC 543
Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
G+ L+K PF + +GTGLGL L++ +++A+ G + S P GT +
Sbjct: 544 GIDPELLKKIFDPF------FTTKAKGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTL 597
Query: 807 IFPL 810
P+
Sbjct: 598 YLPI 601
>gnl|CDD|182968 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
Provisional.
Length = 919
Score = 141 bits (359), Expect = 6e-34
Identities = 92/252 (36%), Positives = 143/252 (56%), Gaps = 12/252 (4%)
Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANY 629
L AKK A++ + KS+FLA +SHE+RTPL +IGF+ + +K PL P +Y
Sbjct: 279 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKT----PL-TPTQRDYLQT 333
Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
I+RS N +L I+ND+LD SK+E+GK+ L P SL E + E ++L+ A+EK + + +
Sbjct: 334 IERSANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLN 393
Query: 690 FANNIPR-ILAD-LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744
++P ++ D LR ++QI N++ NAI FT SG I++ SN +V L +RDT
Sbjct: 394 IDPDVPDNVIGDPLR-LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDT 452
Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
G+G++ + + + F Q S R GTGLGL + + +V+ G S P +G+
Sbjct: 453 GIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTF 512
Query: 805 EIIFPLYDTSHP 816
PL +P
Sbjct: 513 WFHLPLDLNPNP 524
>gnl|CDD|183148 PRK11466, PRK11466, hybrid sensory histidine kinase TorS;
Provisional.
Length = 914
Score = 136 bits (343), Expect = 3e-32
Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 13/241 (5%)
Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
A+ AEK S KS FLA +SHEIRTPL I+G ++++ + P + I
Sbjct: 432 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADN---PA-LNAQRDDLRAITD 487
Query: 633 SGNLVLDIVNDLLDISKIESGKMN--LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
SG +L I+ND+LD S IE+G N + EP + + L+ + I + T
Sbjct: 488 SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATDI 547
Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
A+++P L D R ++Q+ N+LSNA+ FT G I+ + T E+ ++ V D+G G+
Sbjct: 548 ADDLPTALMGDPRRIRQVITNLLSNALRFTDEG--SIVLRSRTDGEQWLVEVEDSGCGID 605
Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
+L + +PF Q+ RG GTGLGL ++ + A G+ STP G+ + P
Sbjct: 606 PAKLAEIFQPFVQVSGK---RG-GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661
Query: 810 L 810
L
Sbjct: 662 L 662
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component
regulatory system with RcsB and YojN; Provisional.
Length = 924
Score = 118 bits (297), Expect = 7e-27
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 7/240 (2%)
Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
AE+ S KS FLA VSHE+RTPL IIG ++++ + P G R + N S +L+
Sbjct: 440 AEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKEL-PKGVDRLVTAMN---NSSSLL 495
Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
L I++D+LD SKIES ++ + S E ++ + +KR+ + ++P
Sbjct: 496 LKIISDILDFSKIESEQLKIEPREFSPREVINHITANYLPLVVKKRLGLYCFIEPDVPVA 555
Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
L D ++Q+ N+LSNAI FT +G I+ + + RVRDTGVG+ E+ +
Sbjct: 556 LNGDPMRLQQVISNLLSNAIKFTDTGC--IVLHVRVDGDYLSFRVRDTGVGIPAKEVVRL 613
Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
PF Q+ Q +GTGLGL + + +++ G + S P G+ I PLY +P
Sbjct: 614 FDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYP 673
>gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 116 bits (293), Expect = 2e-26
Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 20/264 (7%)
Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
DI+E K+ ++ L EK S K+ F++ +SHE+RTPL I+G S ++ +
Sbjct: 265 DITERKRYQDAL-------EKASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL---- 313
Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
+Y I S + +I ND++D+ K+E K+ L +P+ + +++ +L L A
Sbjct: 314 TAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERRKLQLDNQPIDFTDFLADLENLSGLQA 373
Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
+K + +P ++ D ++QI N++SNA+ FT GG + + + + +
Sbjct: 374 EQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQGG-VTVRVRYEEGDMLT 432
Query: 739 LRVRDTGVGMTNYELEK--AMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIF 795
V D+G+G+ EL+K AM + Q+ +S + GTG+GL ++K + A G +
Sbjct: 433 FEVEDSGIGIPEDELDKIFAM--YYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVT 490
Query: 796 STPAKGT--LIEIIFPLYDTSHPH 817
S KG+ + I P
Sbjct: 491 SEEGKGSCFTLTIHAPAVAEEVED 514
>gnl|CDD|163090 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR.
Members of this protein family are the regulatory
histidine kinase PhoR associated with the phosphate ABC
transporter in most Proteobacteria. Related proteins
from Gram-positive organisms are not included in this
model. The phoR gene usually is adjacent to the response
regulator phoB gene (TIGR02154).
Length = 333
Score = 113 bits (285), Expect = 2e-25
Identities = 88/370 (23%), Positives = 148/370 (40%), Gaps = 57/370 (15%)
Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--------PVEDILRKP-FTVFLEQ 503
+ + +A D + +++ EG I N A +L G + +++R P F
Sbjct: 7 RFRAAAQALPDAVVVLDEEGQIEWCNPAAERLLGLRWPDDLGQRITNLIRHPEFV----- 61
Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSSCYSLTM-HDI 561
YL + E + L S E++L +RI P+ L + D+
Sbjct: 62 -------EYLAA------GRFSEPLELPSPINSERVLEIRIA----PYGEEQKLLVARDV 104
Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
+ ++ L ++ DF+A VSHE+RTPLT + G+ E +
Sbjct: 105 TRLRR----LEQMRR----------DFVANVSHELRTPLTVLRGYLETL--ADGPDEDPE 148
Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
+ + + +V DLL +S++ES L EPV + + + +
Sbjct: 149 EWNRALEIMLEQSQRMQSLVEDLLTLSRLESAASPLEDEPVDMPALLDHLRDEAEALSQG 208
Query: 682 KRILIRTSFANNIPRILAD---LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
K I + +L D LRS N++SNAI +TP GG I +
Sbjct: 209 KNHQITFEIDGGVD-VLGDEDELRSAFS---NLVSNAIKYTPEGGTITVRWRRD-GGGAE 263
Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
V DTG+G+ L + + F ++ S+ GTGLGL + K ++ + + I S
Sbjct: 264 FSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAIVKHVLSRHHARLEIESEL 323
Query: 799 AKGTLIEIIF 808
KG+ IF
Sbjct: 324 GKGSTFSFIF 333
>gnl|CDD|182411 PRK10364, PRK10364, sensor protein ZraS; Provisional.
Length = 457
Score = 111 bits (280), Expect = 6e-25
Identities = 60/221 (27%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
A V+HEIR PL++I G ++ +R G + A + + + + +V++LL++ K
Sbjct: 242 AGVAHEIRNPLSSIKGLAKYF-AERAPAGGEAH--QLAQVMAKEADRLNRVVSELLELVK 298
Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
+L + V L++ ++ ++ LV AN + I +R + + +P I AD + Q+ L
Sbjct: 299 ----PTHLALQAVDLNDLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLL 354
Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
N+ NAI G I ++ + S V + V D+G G+ +LE P+
Sbjct: 355 NLYLNAIQAIGQHGVISVTASE-SGAGVKISVTDSGKGIAADQLEAIFTPYF------TT 407
Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
+ EGTGLGL + +V+ + G + S KG + P+
Sbjct: 408 KAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPV 448
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in
two-component regulatory system with EvgA; Provisional.
Length = 1197
Score = 99.0 bits (246), Expect = 4e-21
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 15/271 (5%)
Query: 548 LPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
LP S + Y DI+E + + L + A + KS FLA +SHEIRTP+++I+G
Sbjct: 673 LPASDHAVYICGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMG 732
Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
F E++ L + +E + +G +L ++ ++LD+ KIESG L + V +
Sbjct: 733 FLELLSGS---GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIP 789
Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSG 722
V A K I + S ++ P + D ++ KQ+ N+LSNA+ FT G
Sbjct: 790 TLVQNTCHSFGAIAASKSIAL--SCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEG 847
Query: 723 G-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
+I S H + +++ + D+G G++ E ++ K + Q +Q G+GLGL
Sbjct: 848 AVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQ--QTGSGLGLM 905
Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
+ K ++ G + S P GT I P+
Sbjct: 906 ICKELIKNMQGDLSLESHPGIGTTFTITIPV 936
>gnl|CDD|128669 smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine
kinase-, DNA gyrase B-, phytochrome-like ATPases.
Length = 111
Score = 96.6 bits (241), Expect = 2e-20
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
D ++Q+ N+L NAI +TP GG+I + T + + + V D G G+ +LEK +
Sbjct: 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITV-TLERDGDHLEITVEDNGPGIPPEDLEKIFE 59
Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
PF + + + GTGLGL + K +V+ + G+ + S P GT I PL
Sbjct: 60 PFFRTDGRSR-KIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110
>gnl|CDD|182962 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.
Length = 475
Score = 94.1 bits (235), Expect = 1e-19
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 22/224 (9%)
Query: 594 HEIRTPLTAIIGFSEVI-------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
HE+++PL AI G +E++ RF GN I + +++ LL+
Sbjct: 265 HELKSPLAAIRGAAELLQEDPPPEDRARF--TGN---------ILTQSARLQQLIDRLLE 313
Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
++++E + EPV+L + E + + A K I +R + R+L D ++Q
Sbjct: 314 LARLEQRQELEVLEPVALAALLEELVEAREAQAAAKGITLRLRPDDA--RVLGDPFLLRQ 371
Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
N+L NAI F+P GG I + + E+V L V D G G+ +Y L + + F +P
Sbjct: 372 ALGNLLDNAIDFSPEGGTITL-SAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP 430
Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
R + TGLGL + + + G+ + + P G L + P
Sbjct: 431 ANGR-KSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473
>gnl|CDD|184354 PRK13837, PRK13837, two-component VirA-like sensor kinase;
Provisional.
Length = 828
Score = 90.9 bits (226), Expect = 1e-18
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 28/233 (12%)
Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
++H L AI+G++E+ N + + R Y + I +G I++ +L +
Sbjct: 457 IAHNFNNILGAILGYAEMALN-KLAR--HSRAARYIDEIISAGARARLIIDQILAFGR-- 511
Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
K + +P L E V+E L+++ + + + + + ++Q+ +N+
Sbjct: 512 --KGERNTKPFDLSELVTEIAPLLRV-SLPPGVELDFDQDQEPAVVEGNPAELQQVLMNL 568
Query: 712 LSNAIHFTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAM 757
SNA G++ IS V+LRV DTG G+ L
Sbjct: 569 CSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIF 628
Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
+PF R GTGLGL +V A+ G + ST +GT ++ P
Sbjct: 629 EPFFTT------RAGGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPP 675
>gnl|CDD|181772 PRK09303, PRK09303, adaptive-response sensory kinase; Validated.
Length = 380
Score = 90.8 bits (226), Expect = 1e-18
Identities = 65/255 (25%), Positives = 117/255 (45%), Gaps = 42/255 (16%)
Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
+QE L +++ K+ LA ++H++RTPLTA S ++ G
Sbjct: 138 RQENETLL--EQLKFKDR-----VLAMLAHDLRTPLTAA---SLALETLELG-------- 179
Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMN----------------LHFEPVSLDEAV 668
ID L ++ L D ++ + ++ L F P LD
Sbjct: 180 ----QIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVGRTRWEALRFNPQKLDLGS 235
Query: 669 --SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
E I ++ K + I+T +++P + AD ++Q+ LN+L NAI +TP GG I
Sbjct: 236 LCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQERIRQVLLNLLDNAIKYTPEGGTIT 295
Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
+S H + ++V + + DTG G+ E E+ + ++P + EG G+GL + + +V
Sbjct: 296 LSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGT--EGYGIGLSVCRRIVR 353
Query: 787 ANMGKFYIFSTPAKG 801
+ G+ ++ S P +G
Sbjct: 354 VHYGQIWVDSEPGQG 368
>gnl|CDD|182496 PRK10490, PRK10490, sensor protein KdpD; Provisional.
Length = 895
Score = 83.5 bits (207), Expect = 2e-16
Identities = 73/251 (29%), Positives = 116/251 (46%), Gaps = 36/251 (14%)
Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
A+ +E+E + LA +SH++RTPLT + G +E I G+P + A+ I +
Sbjct: 654 ARLASEREQLRNA-LLAALSHDLRTPLTVLFGQAE-ILTLDLASEGSP-HARQASEIRQQ 710
Query: 634 GNLVLD---IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
VL+ +VN+LLD+++I+SG NL E ++L+E V A L L I S
Sbjct: 711 ---VLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSA--LQMLEPGLSGHPINLSL 765
Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
+ I D +++ +N+L NA+ + + +I I E + L V D G G+
Sbjct: 766 PEPLTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAH-VEGERLQLDVWDNGPGI-- 822
Query: 751 YELEKAMKPFGQIPNSQQI-----RGE------GTGLGLPLAKAMVDANMGKFYIFSTPA 799
P GQ Q I RG G GLGL + +A+V+ + G + + P
Sbjct: 823 --------PPGQ---EQLIFDKFARGNKESAIPGVGLGLAICRAIVEVHGGTIWAENRPE 871
Query: 800 KGTLIEIIFPL 810
G + PL
Sbjct: 872 GGACFRVTLPL 882
>gnl|CDD|162333 TIGR01386, cztS_silS_copS, heavy metal sensor kinase. Members of
this family contain a sensor histidine kinase domain
(Pfam:PF00512) and a domain found in bacterial signal
proteins (Pfam:PF00672). This group is separated
phylogenetically from related proteins with similar
architecture and contains a number of proteins
associated with heavy metal resistance efflux systems
for copper, silver, cadmium, and/or zinc.
Length = 457
Score = 79.7 bits (197), Expect = 3e-15
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 24/232 (10%)
Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-------IEYANYIDRSGNLVL 638
S F A ++HE+RTPLT ++G ++V +Q P Y +E + R
Sbjct: 242 SQFSADLAHELRTPLTNLLGQTQVALSQ---PRTGEEYREVLESNLEELERLSR------ 292
Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
+V+D+L +++ ++G++ L + L +++ + A E+ + IR +
Sbjct: 293 -MVSDMLFLARADNGQLALERVRLDLAAELAKVAEYFEPLAEERGVRIRVE---GEGLVR 348
Query: 699 ADLRSVKQIAL-NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
D + + A+ N+LSNA+ TP GG I + S+ EV + V + G G+ L +
Sbjct: 349 GD-PQMFRRAISNLLSNALRHTPDGGTITVRIERRSD-EVRVSVSNPGPGIPPEHLSRLF 406
Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
F ++ ++ GEGTGLGL + +++++A+ G+ S K I + FP
Sbjct: 407 DRFYRVDPARSNSGEGTGLGLAIVRSIMEAHGGRASAESPDGKTRFI-LRFP 457
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase
BaeS; Provisional.
Length = 466
Score = 76.6 bits (189), Expect = 2e-14
Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 11/235 (4%)
Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNL 636
EK + DF+A +SHE+RTPL + G E I++ ++F P E +
Sbjct: 234 EKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTP-------ESVASLQAEVGT 286
Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
+ +V+DL +S + G + PV L + A + + + ++ S ++
Sbjct: 287 LTKLVDDLHQLSLSDEGALAYRKTPVDLVPLLEVAGGAFRERFASRGLTLQLSLPDSAT- 345
Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
+ D + Q+ N+L N++ +T SGG + IS ++ + L D+ G+++ +L+K
Sbjct: 346 VFGDPDRLMQLFNNLLENSLRYTDSGGSLHIS-AEQRDKTLRLTFADSAPGVSDEQLQKL 404
Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
+ F + S+ G+GLGL + +V+A+ G+ +P G I + PL
Sbjct: 405 FERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLE 459
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional.
Length = 482
Score = 76.0 bits (187), Expect = 4e-14
Identities = 58/228 (25%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE---YANYIDRSGNLVLDIV 641
+S+F A ++HEIRTP+T +I +E+ +Q + + +E Y+N + +V
Sbjct: 262 QSNFSADIAHEIRTPITNLITQTEIALSQS----RSQKELEDVLYSNL--EELTRMAKMV 315
Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
+D+L +++ ++ ++ + + L + V + + +A E+ + +R F + ++ D
Sbjct: 316 SDMLFLAQADNNQLIPEKKMLDLADEVGKVFDFFEAWAEERGVELR--FVGDPCQVAGDP 373
Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
+++ N+LSNA+ +TP+G I + ++ V L V + G + L + F
Sbjct: 374 LMLRRAISNLLSNALRYTPAGEAITVRCQEVDHQ-VQLVVENPGTPIAPEHLPRLFDRFY 432
Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
++ S+Q +GEG+G+GL + K++V A+ G + ++ A+GT I P
Sbjct: 433 RVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAV-TSDARGTRFVISLP 479
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional.
Length = 430
Score = 75.4 bits (186), Expect = 5e-14
Identities = 85/369 (23%), Positives = 146/369 (39%), Gaps = 69/369 (18%)
Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGY--------PVEDILRKP-FTVFLEQNTPSVM 509
E+ D + + EG I N +L G+ + ++LR P FT +L+
Sbjct: 105 ESLPDAVVLTTEEGNIFWCNGLAQQLLGFRWPEDNGQNILNLLRYPEFTQYLKTRD---- 160
Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEK 568
+ L+L L + L +R+ +P++ + D+++ Q
Sbjct: 161 ---FSRPLTLVL------------NNGRHLEIRV----MPYTEGQLLMVARDVTQMHQ-- 199
Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYA 627
L A++ +F A VSHE+RTPLT + G+ E++++Q G L
Sbjct: 200 --LEGARR----------NFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMR 247
Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE----PVSLDEAVSEAISLVQLYANEKR 683
R L V LL +SKIE+ E P+ L EA +L Q +
Sbjct: 248 EQTQRMEGL----VKQLLTLSKIEAAPTIDLNEKVDVPMMLRVLEREAQTLSQ---GKHT 300
Query: 684 ILIRTSFANNIPRILAD---LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
I +N ++ + LRS N++ NA++ TP G I +
Sbjct: 301 ITFEV---DNSLKVFGNEDQLRSAIS---NLVYNAVNHTPEGTHITVRWQRVPQ-GAEFS 353
Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
V D G G+ + + + F ++ ++ + G+GLGL + K + + + I S K
Sbjct: 354 VEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIESEVGK 413
Query: 801 GTLIEIIFP 809
GT + P
Sbjct: 414 GTRFSFVLP 422
>gnl|CDD|128670 smart00388, HisKA, His Kinase A (phosphoacceptor) domain.
Dimerisation and phosphoacceptor domain of histidine
kinases.
Length = 66
Score = 70.3 bits (173), Expect = 2e-12
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
K +FLA +SHE+RTPLTAI G+ E++++ + EY I RS +L ++NDL
Sbjct: 2 KREFLANLSHELRTPLTAIRGYLELLEDTEL----SEEQREYLETILRSAERLLRLINDL 57
Query: 645 LDISKIESG 653
LD+S+IE+G
Sbjct: 58 LDLSRIEAG 66
>gnl|CDD|181882 PRK09467, envZ, osmolarity sensor protein; Provisional.
Length = 435
Score = 70.3 bits (173), Expect = 2e-12
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 37/230 (16%)
Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
+A VSH++RTPLT I +E++ E Y+ S I D+ + +
Sbjct: 233 MAGVSHDLRTPLTRIRLATEMM-------------SEEDGYLAES------INKDIEECN 273
Query: 649 KIESGKMN-------LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
I ++ + E L+ + E I+ Y E I T+ + +
Sbjct: 274 AIIEQFIDYLRTGQEMPMEMADLNALLGEVIAAESGYERE----IETALQPGPIEVPMNP 329
Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
++K+ N++ NA + G I +S+ +V D G G+ +L+ +PF
Sbjct: 330 IAIKRALANLVVNAARY--GNGWIKVSSGTEGKR-AWFQVEDDGPGIPPEQLKHLFQPFT 386
Query: 762 QIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
+ RG GTGLGL + K +VD + GK + ++ G PL
Sbjct: 387 R---GDSARGSSGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPL 433
>gnl|CDD|182388 PRK10337, PRK10337, sensor protein QseC; Provisional.
Length = 449
Score = 59.3 bits (144), Expect = 4e-09
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 27/199 (13%)
Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY---IDRSGNLVLDIVNDL 644
F + +HE+R+PL A+ +EV + P R IDR+ LV + L
Sbjct: 240 FTSDAAHELRSPLAALKVQTEVAQLSDDDPQA--RKKALLQLHAGIDRATRLV----DQL 293
Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
L +S+++S + L++ + A+ + A + I +R + N P I R+
Sbjct: 294 LTLSRLDSLDNLQDVAEIPLEDLLQSAVMDIYHTAQQAGIDVRLT-LNAHPVI----RTG 348
Query: 705 KQIAL-----NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
+ + L N+L NAI ++P G + ++ + VRD G G+T L + +
Sbjct: 349 QPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNARN-----FTVRDNGPGVTPEALARIGER 403
Query: 760 FGQIPNSQQIRGEGTGLGL 778
F + P + G+GLGL
Sbjct: 404 FYRPPGQEA---TGSGLGL 419
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system
histidine kinase. This histidine kinase protein is
paired with an adjacent response regulator (TIGR03787)
gene. It co-occurs with a variant sortase enzyme
(TIGR03784), usually in the same gene neighborhood, in
proteobacterial species most of which are marine, and
with an LPXTG motif-containing sortase target conserved
protein (TIGR03788). Sortases and LPXTG proteins are far
more common in Gram-positive bacteria, where sortase
systems mediate attachment to the cell wall or
cross-linking of pilin structures. We give this
predicted sensor histidine kinase the gene symbol psdS,
for Proteobacterial Dedicated Sortase system Sensor
histidine kinase.
Length = 703
Score = 55.9 bits (135), Expect = 4e-08
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 22/230 (9%)
Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS--GNLVLD-IVNDL 644
+R+SHE+RTP+ A++ S ++N L E Y++R+ G L I+N++
Sbjct: 488 MSSRLSHELRTPV-AVVRSS--LENLELQALEQ----EKQKYLERAREGTERLSMILNNM 540
Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRIL-IRTS--FANNIPRILAD 700
+ +++E + E L E +S + Q Y ++ L I + P ++A
Sbjct: 541 SEATRLEQAIQSAEVEDFDLSEVLSGCMQGYQMTYPPQRFELNIPETPLVMRGSPELIA- 599
Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
Q+ ++ NA F+P G I + + +L V + G + E+
Sbjct: 600 -----QMLDKLVDNAREFSPEDGLIEVG-LSQNKSHALLTVSNEGPPLPEDMGEQLFDSM 653
Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFP 809
+ + GLGL + + + D + G+ + G + I P
Sbjct: 654 VSVRDQGAQDQPHLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703
>gnl|CDD|163071 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes.
Length = 679
Score = 52.4 bits (126), Expect = 5e-07
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL-E 754
+ AD ++++ +++ NA+ TP G++ I I + D+G GM+ + E
Sbjct: 572 SVRADRERLERVLGHLVQNALEATPGEGRVAIRVERECGAARI-EIEDSGCGMSPAFIRE 630
Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
+ KPF +G G G+G+ + V+ G+ + STP +GT+ ++ P
Sbjct: 631 RLFKPF------DTTKGAGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679
>gnl|CDD|184141 PRK13557, PRK13557, histidine kinase; Provisional.
Length = 540
Score = 52.4 bits (126), Expect = 5e-07
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 24/118 (20%)
Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE-----------------VILRVRDTGVGMTNY 751
LN+L NA P GG++ I T N E V + V DTG GM
Sbjct: 283 LNVLINARDAMPEGGRVTIRT---RNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPE 339
Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
L + M PF + + G+GTGLGL + + G I+S +GT + + FP
Sbjct: 340 ILARVMDPF----FTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFP 393
>gnl|CDD|182583 PRK10604, PRK10604, sensor protein RstB; Provisional.
Length = 433
Score = 51.1 bits (123), Expect = 1e-06
Identities = 48/226 (21%), Positives = 96/226 (42%), Gaps = 14/226 (6%)
Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
++HE+RTPL V R N E ++R + ++ +LL ++++
Sbjct: 219 IAHELRTPL--------VRLRYRLEMSDNLSAAESQA-LNRDIGQLEALIEELLTYARLD 269
Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
+ LH L +S ++ +Q EK + + T + D+R ++++ N+
Sbjct: 270 RPQNELHLSEPDLPAWLSTHLADIQAVTPEKTVRLDTPHQGDY--GALDMRLMERVLDNL 327
Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
L+NA+ + + ++ +S N+ L V D G G+ E E+ +PF ++ S+
Sbjct: 328 LNNALRY--AHSRVRVSLLLDGNQ-ACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRAT 384
Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
G GLGL + ++ A G + G +P++
Sbjct: 385 GGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWHNLPQF 430
>gnl|CDD|131984 TIGR02938, nifL_nitrog, nitrogen fixation negative regulator NifL.
NifL is a modulator of the nitrogen fixation positive
regulator protein NifA, and is therefore a negative
regulator. It binds NifA. NifA and NifL are encoded by
adjacent genes.
Length = 494
Score = 51.1 bits (122), Expect = 1e-06
Identities = 102/520 (19%), Positives = 209/520 (40%), Gaps = 66/520 (12%)
Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
+TVD+ P+ + N+ YAN +F +T Y EI G ++L +N
Sbjct: 8 QTVDQAPLAISITDLKANILYANDAFTRITGYTKE---EIIGKNESVL-------SNHTT 57
Query: 383 PVMLYRSDRTCIAA----SARLHTIQWNRENSLA-MTFIPFEKANQFPEN-----MPQNG 432
P +Y++ +A + +L + + E LA +T P N+ E M ++
Sbjct: 58 PPEVYQALWGSLAEQKPWAGKLLNRRKDGELYLAELTVAPV--LNEAGETTHFLGMHRDI 115
Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
E ++ + +K+ IE S+++A +++ G ++ N+ KL
Sbjct: 116 TELHRLEQVVANQKLLIE-----SVVDAAPVAFVLLDPTGRVILDNQEYKKLATDLRVKE 170
Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLP 549
L + + + L+ R+ + G + + LS I ++
Sbjct: 171 PAHTVLDLLREAWREALAENWPQQLAFSNREA--RFDRGGGRPARWLSCTGSVIGMESDC 228
Query: 550 FSSCYS--------LTMHDISEWK--QEKNKLSHAKKI-AEKE--SSHKSDFLARVSHEI 596
S + LT+ DIS + QE+ +LS + + AE+E + + A + H +
Sbjct: 229 ADSFFCAAEQPYLLLTIADISNLREEQERARLSALQALMAEEERLEAIRETLSAAI-HRL 287
Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
+ P+ +I + + +R GNP +G ++ + ++ S E
Sbjct: 288 QGPMN-LISAAISVLQRRGDDAGNPASAAMLQQALSAGREHMEALRQVIPQSPQEI---- 342
Query: 657 LHFEPVSLDEAVSEAISLV--QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
PV+L++ + + I+L +L A I++ A +P IL ++ + ++ N
Sbjct: 343 --VVPVNLNQILRDVITLSTPRLLA--AGIVVDWQPAATLPAILGRELQLRSLFKALVDN 398
Query: 715 AI----HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
AI ++ I TT + + +++ + D+G G+ K +PF
Sbjct: 399 AIEAMNIKGWKRRELSI-TTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS--- 454
Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
+ G+GL +A+ +V + G + ++G I + F +
Sbjct: 455 RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFRV 494
>gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional.
Length = 348
Score = 50.8 bits (122), Expect = 1e-06
Identities = 89/396 (22%), Positives = 157/396 (39%), Gaps = 102/396 (25%)
Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
IL + + I +++ + I N A +L + P P ++++
Sbjct: 12 ILNSLINSILLLDDDLAIHYANPAAQQLLAQSSRKLFGTPL--------PELLSY----- 58
Query: 517 LSLD---LRQTLE--------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEW 564
SL+ +R++L+ ++TL +LSL L M +
Sbjct: 59 FSLNIELMRESLQAGQGFTDNEVTLVIDGRSHILSLTAQ----RLPEGMILLEMAPMDNQ 114
Query: 565 K---QEKNKLSHAKKIAEKESSHKSDFLAR-VSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
+ QE+ + HA+++A ++ L R ++HEI+ PL + G ++++ L +
Sbjct: 115 RRLSQEQLQ--HAQQVAARD-------LVRGLAHEIKNPLGGLRGAAQLLSKA----LPD 161
Query: 621 PRYIEYANYI----DRSGNLVLDIVNDLLDISKIESGKM-NLHFEPVSLDEAVSEAIS-L 674
P EY I DR NLV + LL + + ++H V+E + L
Sbjct: 162 PALTEYTKVIIEQADRLRNLV----DRLLGPQRPGTHVTESIH--------KVAERVVQL 209
Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH-FTPSGGQIIISTTHTS 733
V L + LIR + ++P + D ++Q+ LNI+ NA+ P GG I + T T+
Sbjct: 210 VSLELPDNVRLIR-DYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGTITLR-TRTA 267
Query: 734 NEEVI----------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQI---------RGEGT 774
+ + + + D G G IP Q R GT
Sbjct: 268 FQLTLHGERYRLAARIDIEDNGPG---------------IPPHLQDTLFYPMVSGREGGT 312
Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
GLGL +A+ ++D + GK S P T + P+
Sbjct: 313 GLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347
>gnl|CDD|128402 smart00091, PAS, PAS domain. PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels ([1]; Ponting & Aravind, in press).
Length = 67
Score = 46.2 bits (110), Expect = 3e-05
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
+L +ILE+ DGI +++ +G IL N A +L GY E+++ K +
Sbjct: 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELI 50
>gnl|CDD|161776 TIGR00229, sensory_box, PAS domain S-box. The PAS domain was
previously described. This sensory box, or S-box domain
occupies the central portion of the PAS domain but is
more widely distributed. It is often tandemly repeated.
Known prosthetic groups bound in the S-box domain
include heme in the oxygen sensor FixL, FAD in the redox
potential sensor NifL, and a 4-hydroxycinnamyl
chromophore in photoactive yellow protein. Proteins
containing the domain often contain other regulatory
domains such as response regulator or sensor histidine
kinase domains. Other S-box proteins include
phytochromes and the aryl hydrocarbon receptor nuclear
translocator.
Length = 124
Score = 45.0 bits (107), Expect = 9e-05
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514
+I E++ D I +I+ EG IL N A ++FGY E+++ R + E++ V
Sbjct: 7 AIFESSPDAIIVIDLEGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVR----- 61
Query: 515 EILSLDLRQTLEKITLGSTKEEK-------LLSLRIII--KKLPFSSCYSLTMHDISEWK 565
E + L E ++ K +S+ I + DI+E K
Sbjct: 62 ERIERLLEGEREPVSEERRVRRKDGSEIWVEVSVSPIRTNGGELG---VVGIVRDITERK 118
Query: 566 QEKNKL 571
Q + L
Sbjct: 119 QAEEAL 124
>gnl|CDD|182702 PRK10755, PRK10755, sensor protein BasS/PmrB; Provisional.
Length = 356
Score = 42.6 bits (101), Expect = 4e-04
Identities = 56/232 (24%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
F A V+HE+RTPL I E+++ Q I+ A I R + + V LL +
Sbjct: 140 FTADVAHELRTPLAGIRLHLELLEKQ--HH------IDVAPLIARLDQM-MHTVEQLLQL 190
Query: 648 SKIE----SGKMNLHFEPVSLDEAV-----SEAISLVQLYANEKRILIRTSFANNIPRIL 698
++ SG H++ V L E V E +++ ++ +L+ S A+ +
Sbjct: 191 ARAGQSFSSG----HYQTVKLLEDVILPSQDELSEMLEQ--RQQTLLLPESAAD--ITVQ 242
Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
D ++ + N++ NA ++P G I I + + +L V D G G+ + + K
Sbjct: 243 GDATLLRLLLRNLVENAHRYSPEGSTITIKLSQE-DGGAVLAVEDEGPGIDESKCGELSK 301
Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
F ++ + R G GLGL + + + G+F++ + GT + P
Sbjct: 302 AFVRMDS----RYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLP 349
>gnl|CDD|181885 PRK09470, cpxA, two-component sensor protein; Provisional.
Length = 461
Score = 42.6 bits (101), Expect = 4e-04
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD-IVNDLLDI 647
L+ +SHE+RTPLT + + +++ +R G IE R LD ++NDLL +
Sbjct: 247 LSDISHELRTPLTRLQLATALLR-RRQGESKELERIE--TEAQR-----LDSMINDLLVL 298
Query: 648 SKIESGKMNLHFE----PVS------LDEAVSEA----ISLVQLYANEKRILIRTSFANN 693
S+ + H E + L++A EA SL + N
Sbjct: 299 SRNQ---QKNHLERETFKANSLWSEVLEDAKFEAEQMGKSLTVSAPPGPWPI----NGN- 350
Query: 694 IPRILADLRSVKQIAL-NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
P LA AL NI+ NA+ ++ + +I ++ + + + + V D G G+ E
Sbjct: 351 -PNALAS-------ALENIVRNALRYSHT--KIEVAFS-VDKDGLTITVDDDGPGVPEEE 399
Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
E+ +PF ++ ++ GTGLGL + + + + G +P G + I PLY
Sbjct: 400 REQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458
>gnl|CDD|117025 pfam08448, PAS_4, PAS fold. The PAS fold corresponds to the
structural domain that has previously been defined as
PAS and PAC motifs. The PAS fold appears in archaea,
eubacteria and eukarya.
Length = 110
Score = 40.1 bits (94), Expect = 0.002
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEI 516
L++ D +A+++ +G + N A ++LFG P E++L + + ++ + L
Sbjct: 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLAELLPPEDAARLE-RALRRA 59
Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC------YSLTMHDISE 563
L + L EE+ LR P + DI+E
Sbjct: 60 LEGEEPIDFL-EELLLNGEERHYELR----LTPLRDPDGEVIGVLVISRDITE 107
>gnl|CDD|130980 TIGR01925, spIIAB, anti-sigma F factor. This model describes the
SpoIIAB anti-sigma F factor. Sigma F regulates spore
development in B subtilis. SpoIIAB binds to sigma F,
preventing formation of the transcription complex at the
promoter. SpoIIAA (anti-anti-sigma F factor) binds to
SpoIIAB to inhibit association with sigma F, however
SpoIIAB can phosphorylate SpoIIAA, causing
disassociation of the SpoIIAA/B complex. The SpoIIE
phosphatase dephosphorylates SpoIIAA.
Length = 137
Score = 38.8 bits (90), Expect = 0.006
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 688 TSFANNIPRILADLRSVKQIALNILSNAI---HFTPSGGQIIISTTHTSNEEVILRVRDT 744
SF + + +L +K ++NAI + G + IS T + EV + VRD
Sbjct: 24 ASFIAQLDPTMEELTDIKTAVSEAVTNAIIHGYEENCEGVVYISAT-IEDHEVYITVRDE 82
Query: 745 GVGMTNYELEKAMKP-FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
G+G+ N LE+A +P + P E +G+G + + +D + S KGT
Sbjct: 83 GIGIEN--LEEAREPLYTSKPEL-----ERSGMGFTVMENFMD----DVSVDSEKEKGTK 131
Query: 804 I 804
I
Sbjct: 132 I 132
>gnl|CDD|182952 PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional.
Length = 542
Score = 37.2 bits (87), Expect = 0.016
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA-MKPFGQIPNSQQIRGEGTGLGLP 779
GG+I +S H N + V D G G+ E++ K + +G G+GL
Sbjct: 453 EGGEISVSL-HYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYST-------KGSNRGVGLY 504
Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
L K V+ G + S P GT + P +D
Sbjct: 505 LVKQSVENLGGSIAVESEPGVGTQFFVQIP-WD 536
>gnl|CDD|179626 PRK03660, PRK03660, anti-sigma F factor; Provisional.
Length = 146
Score = 34.5 bits (80), Expect = 0.12
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 32/156 (20%)
Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
+MNL F ++SE S R+ + +FA + L +L +K ++
Sbjct: 4 EMNLEFS------SLSENESFA-------RVTV-AAFAAQLDPTLEELTEIKTAVSEAVT 49
Query: 714 NAI----HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP-FGQIPNSQQ 768
NAI P G + I EE+ + VRD G G+ + +E+AM+P + P
Sbjct: 50 NAIIHGYENNPDG-VVYIEVEIE-EEELEITVRDEGKGIED--IEEAMQPLYTTKPEL-- 103
Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
E +G+G + ++ +D + + S P KGT +
Sbjct: 104 ---ERSGMGFTVMESFMD----EVEVESEPGKGTTV 132
>gnl|CDD|181827 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 34.5 bits (80), Expect = 0.13
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLH-FEPVSLDEAVSEAISLVQLYANEKRILIRT 688
+ R +LVL+ +LLD+ ++E+GK H FE V LD ++L Y
Sbjct: 82 LLRFHDLVLENREELLDLVQLETGKARRHAFEEV-LD------VALTARY---------- 124
Query: 689 SFANNIPRILADLRSVKQIALNILSNAI-HFTPSG--GQI 725
+A P++LA R + AL +L+ P G G I
Sbjct: 125 -YARRAPKLLAPRR--RAGALPVLTKTTELRQPKGVVGVI 161
>gnl|CDD|179945 PRK05137, tolB, translocation protein TolB; Provisional.
Length = 435
Score = 32.2 bits (74), Expect = 0.57
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSN------AIHFTPSGGQIIIS 728
N + I S+AN PR+ L DL + ++ ++ N A F+P G ++++S
Sbjct: 212 NRQEITY-MSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRKVVMS 263
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 32.0 bits (73), Expect = 0.65
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
+E ++ G+A++ EG L N+A+ + GY E++ F + E L
Sbjct: 289 MEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELRGLTF---------QQLTW--PEDL 337
Query: 518 SLDLRQTLEKITLG 531
+ DL+Q +EK+ G
Sbjct: 338 NKDLQQ-VEKLLSG 350
>gnl|CDD|183679 PRK12682, PRK12682, transcriptional regulator CysB-like protein;
Reviewed.
Length = 309
Score = 31.1 bits (71), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
I RIL ++ ++K+I + + G + I+TTHT
Sbjct: 70 IERILREVGNIKRIGDDFSN------QDSGTLTIATTHT 102
>gnl|CDD|182591 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 30.3 bits (69), Expect = 1.9
Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 41/252 (16%)
Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP---RYIEY 626
KL A++ EK + FL + E++ PL ++ + ++ P + E
Sbjct: 435 KLQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTSDEEQQQPELDQLAEQ 494
Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL----DEAVSEAISLV-----QL 677
++ + R LV +I LL + +E+ E SL DE + E + + QL
Sbjct: 495 SDVLVR---LVDNIQ--LL--NMLETQDWKPEQELFSLQDLIDEVLPEVLPAIKRKGLQL 547
Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALN-ILSNAIHF---TPSGGQIIISTTHTS 733
+ N++ LR + AL IL +++ T + G+I +
Sbjct: 548 LIH-----------NHLK--AEQLRIGDRDALRKILLLLLNYAITTTAYGKITLEVDQDE 594
Query: 734 N--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
+ + + +R+ DTG G++ EL+ PF + +Q R G+ +GL L + G
Sbjct: 595 SSPDRLTIRILDTGAGVSIKELDNLHFPF--LNQTQGDRYGKASGLTFFLCNQLCRKLGG 652
Query: 791 KFYIFSTPAKGT 802
I S GT
Sbjct: 653 HLTIKSREGLGT 664
>gnl|CDD|150730 pfam10090, DUF2328, Uncharacterized protein conserved in bacteria
(DUF2328). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 181
Score = 30.2 bits (69), Expect = 2.2
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
+ + L EA S +++ Y RI + + R L VK + LN+L A
Sbjct: 51 QQIDLAEAKS----VLEGYLAGGRITLDW----QLERDLLPKPEVK-LLLNLLLIAEDAL 101
Query: 720 PSGGQIIISTTHTSNEEVILRVRDTG 745
P GG+I + S+ RV G
Sbjct: 102 PRGGEIDVGE--GSDGAGGWRVTAEG 125
>gnl|CDD|183097 PRK11359, PRK11359, cyclic-di-GMP phosphodiesterase; Provisional.
Length = 799
Score = 30.1 bits (68), Expect = 2.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFL 501
I+ NRA +++FGY + + L
Sbjct: 158 IVQCNRAFTEMFGYCISEASGMQPDTLL 185
Score = 29.7 bits (67), Expect = 3.4
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
LE G +IN +L N A KL+GY E+++ + + +
Sbjct: 14 FFPALEQNMMGAVLINENDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPR 63
>gnl|CDD|106506 PRK13560, PRK13560, hypothetical protein; Provisional.
Length = 807
Score = 29.6 bits (66), Expect = 3.5
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 23/104 (22%)
Query: 711 ILSNAI-HFTPSG--GQIIISTTHTSNEEVILRVRDTGVGM-TNYELEKAMKPFGQIPNS 766
+LSNA+ H P G G I + + V L V D G+G+ ++ A
Sbjct: 719 LLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAGFDFRAA---------- 768
Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
LGL L A+V G+ + S G I FP+
Sbjct: 769 -------ETLGLQLVCALVKQLDGEIALDSR--GGARFNIRFPM 803
>gnl|CDD|162472 TIGR01661, ELAV_HUD_SF, ELAV/HuD family splicing factor. These
proteins contain 3 RNA-recognition motifs (rrm:
pfam00076).
Length = 352
Score = 29.1 bits (65), Expect = 4.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
MT +ELE PFGQI S+ + TGL
Sbjct: 101 MTQHELESIFSPFGQIITSRILSDNVTGL 129
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 28.8 bits (65), Expect = 5.8
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 37/114 (32%)
Query: 710 NILSNA----IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
N+L NA + F + IS T + + V D G G IP
Sbjct: 385 NVLDNACKYCLEF------VEISARQTDEH-LHIVVEDDGPG---------------IPE 422
Query: 766 SQQ----IRGE-------GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
S++ RG+ G GLGL +A+ + + GK +P G +E+IF
Sbjct: 423 SKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIF 476
>gnl|CDD|150678 pfam10032, Pho88, Phosphate transporter (Pho88). Members of this
family of proteins are involved in inorganic phosphate
transport, as well as telomere length regulation and
maintenance.
Length = 192
Score = 28.5 bits (64), Expect = 6.7
Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 27/95 (28%)
Query: 734 NEEVILRVRDTGVGMTNYELEKAMKP------FGQIPNSQQIRGEGTGLGL--------- 778
N+ L+ + M+ E K + Q+ + + G+ +
Sbjct: 58 NDLTTLKYVEPANPMSGDEEPKLVTTTVREYDLQQL--RKLFKSILMGVAMMGFMHLYMK 115
Query: 779 ---PLA-------KAMVDANMGKFYIFSTPAKGTL 803
PL K+ +++N+ K ++F PA+G L
Sbjct: 116 YTNPLLLQSIMPPKSALESNLVKIHLFGKPAEGDL 150
>gnl|CDD|150285 pfam09561, RE_HpaII, HpaII restriction endonuclease. This family
includes the HpaII (recognizes and cleaves C^CGG)
restriction endonuclease.
Length = 355
Score = 28.5 bits (64), Expect = 7.2
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 27/133 (20%)
Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
+ +SS K+D + H+IRT ++GFS IK++ LG+ + A ++ N
Sbjct: 113 KAKSSDKTDITIVI-HDIRTGQKPLLGFS--IKSR----LGSMPTLLNAG---KTTNFKF 162
Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL---VQLYANEKRILIRTSFANNI- 694
+I L IE K+N P + + + L ++ E + F NN+
Sbjct: 163 EISGINLANPTIE--KINAISTPSKIKDRIKMIERLGGILKYLKVEDDV-----FRNNLL 215
Query: 695 ------PRILADL 701
P ILA++
Sbjct: 216 LIDSHLPEILAEM 228
>gnl|CDD|161828 TIGR00341, TIGR00341, conserved hypothetical protein TIGR00341.
This conserved hypothetical protein is found so far only
in three archaeal genomes and in Streptomyces
coelicolor. It shares a hydrophobic uncharacterized
domain (see model TIGR00271) of about 180 residues with
several eubacterial proteins, including the much longer
protein sll1151 of Synechocystis PCC6803.
Length = 325
Score = 28.3 bits (63), Expect = 8.2
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL-- 780
+I + + E+++ R++D +G + F P S++ E
Sbjct: 43 DRIELYVQDSDTEKIVSRLKDKLLGYKESIIVVYKPEFVISPASRREEAEEKTSLPVEEL 102
Query: 781 ---AKAMVDANMG---KFYIFSTPAKGTLIE----------IIFPLYDTSH 815
AK+ N G + A LI II PL H
Sbjct: 103 YEMAKSYASLNKGRSVVTILAGIIALSGLIMNNAVILIGAMIIAPLLGPIH 153
>gnl|CDD|173622 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 28.2 bits (63), Expect = 8.3
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 24/112 (21%)
Query: 187 NRVDNDPRALGKRLDKKF--------SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
R+DN+ + L K ++K HL ++ S EKE + + +K
Sbjct: 543 LRIDNESKYLEKLIEKHLLNNNHRVTVHLEAVES--SKYEKEFNKLVKDE-------LKE 593
Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQED-FHTINLNQYTKKQ 287
++S LT+ D++ K Y E + PE D F ++L+ K+
Sbjct: 594 RLSHLTK--EQVDEMEK--AYEKFKKEREADDDPEHLDSFPILSLSDLNKET 641
>gnl|CDD|182850 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
Provisional.
Length = 565
Score = 28.3 bits (64), Expect = 9.2
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 714 NAI-HFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
NAI H + +I +S + E + +RD G+G
Sbjct: 482 NAIKH--ANASEIAVSCVTNPDGEHTVSIRDDGIG 514
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 13,318,802
Number of extensions: 878962
Number of successful extensions: 1707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 73
Length of query: 820
Length of database: 5,994,473
Length adjustment: 101
Effective length of query: 719
Effective length of database: 3,812,065
Effective search space: 2740874735
Effective search space used: 2740874735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.4 bits)