RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] (820 letters) >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Score = 194 bits (495), Expect = 6e-50 Identities = 78/355 (21%), Positives = 135/355 (38%), Gaps = 22/355 (6%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 SILE+ I ++++G I N+ +LFG E++L + + + Sbjct: 12 SILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPD---FEEIGSVAES 68 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 + L G I + L I+ + + Sbjct: 69 VFENKEPVFLNFYKFGER------YFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEE 122 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + + S + ARV+HEIR P+T I GF +K P +Y N I + Sbjct: 123 RKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDP---ETLKKYINIITNELS 179 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 + IV ++L+ SK + L F +L+E + E L + + I N Sbjct: 180 RLETIVKEILEYSK---ERQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDL 236 Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 R+ AD +KQ+ +N++ NAI T G+I I++ +V + V ++G + EK Sbjct: 237 RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDM-YTKVRVSVWNSGPPIPEELKEK 295 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 PF + +GTGLGL + + +++ G G + P Sbjct: 296 IFSPF------FTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPK 344 >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Score = 190 bits (485), Expect = 8e-49 Identities = 62/256 (24%), Positives = 127/256 (49%), Gaps = 12/256 (4%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M +++E +E +L ++ K++F+A +SHE+RTPLTAI ++E I G Sbjct: 1 MENVTE-SKELERLKRIDRM-------KTEFIANISHELRTPLTAIKAYAETIY-NSLGE 51 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 L E+ I N + +++N+LLD S++E + ++ E V L + V A++ ++ Sbjct: 52 LDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKE 111 Query: 678 YANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736 +A+ + + D ++Q+ LN+L+N + ++ ++ Sbjct: 112 FASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD 171 Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794 V++ V D G+G+ ++ ++ + F ++ +S GTGLGL + K +V+ + G+ ++ Sbjct: 172 GGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 Query: 795 FSTPAKGTLIEIIFPL 810 S KG+ + P Sbjct: 232 ESEVGKGSRFFVWIPK 247 >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Score = 182 bits (464), Expect = 2e-46 Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 11/223 (4%) Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646 F + +HE+R+PLTA+ +EV + P + + + +V+ LL Sbjct: 4 RFTSDAAHELRSPLTALKVQTEVAQLSDDDP---QARKKALLQLHSGIDRATRLVDQLLT 60 Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706 +S+++S + L++ + ++ + A + +I +R + + + + Sbjct: 61 LSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSL 120 Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 + N+L NA+ ++P G + ++ VRD G G+T L + + F + P Sbjct: 121 LVRNLLDNAVRYSPQGSVVDVTL-----NADNFIVRDNGPGVTPEALARIGERFYRPPGQ 175 Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 G+GLGL + + + + + G ++ + Sbjct: 176 ---TATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWL 215 >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Score = 176 bits (449), Expect = 1e-44 Identities = 67/233 (28%), Positives = 113/233 (48%), Gaps = 16/233 (6%) Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637 AEK + + A +SHEIR PLTA GF ++I+ Q PL + +YA + Sbjct: 8 AEKMEA-VTHLAASISHEIRNPLTAARGFIQLIEEQ---PLAADKRRQYARIAIEELDRA 63 Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697 I+ D L +K E +++ + I +++ AN + I+ + A + Sbjct: 64 EAIITDYLTFAKPAPETP----EKLNVKLEIERVIDILRPLANMSCVDIQATLAP--FSV 117 Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757 + + +Q LN++ NAI P+GG + + + N V++R+ DTGVGMT +LE+ Sbjct: 118 IGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSI-DNGRVLIRIADTGVGMTKEQLERLG 176 Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +P+ +GTGLG+ + ++++ G I S KGT + I PL Sbjct: 177 EPYFTTKGV-----KGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPL 224 >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Score = 173 bits (440), Expect = 1e-43 Identities = 40/388 (10%), Positives = 108/388 (27%), Gaps = 43/388 (11%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 S + +A + + N++ + L ++ ++ Sbjct: 3 SATDTHHVELARERSKTVTSFYNQSAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGR 62 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575 L +L + G ++ I + Y ++++ K+ Sbjct: 63 YLQQELPVRIAHRIKGFRSLPFIIGCNPTILHV--HELYIRAFQKLTDFPPIKD------ 114 Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635 + + + + ++ + + +T + + + + S Sbjct: 115 ---QADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKH---IEDEKLVRYFLDKTLTSRL 168 Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSFANN 693 + + L + + + + + +S + + + + + K + Sbjct: 169 GIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHV 228 Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------HTSNEEVILRVRDTGV 746 R + I +L NA+ T ++ ++I+R+ D G Sbjct: 229 AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGG 288 Query: 747 GMTNYELEKAMKPF--------------------GQIPNSQQIRGEGTGLGLPLAKAMVD 786 G+ + +L++ M Q G G GLP ++A + Sbjct: 289 GIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAE 348 Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814 G + S GT + + D Sbjct: 349 YLGGSLQLQSLQGIGTDVYLRLRHIDGR 376 >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Score = 111 bits (279), Expect = 8e-25 Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 8/151 (5%) Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719 E + + S + K + I + I + + ++ N+L NA + Sbjct: 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEIS-FVGEQNDFVEVMGNVLDNACKYC 60 Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779 +I + ++E + + V D G G+ + E ++ G G+GL Sbjct: 61 LEFVEI---SARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL----RPGQGVGLA 113 Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 +A+ + + GK + G +E+IF Sbjct: 114 VAREITEQYEGKIVAGESMLGGARMEVIFGR 144 >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli} SCOP: d.122.1.3 Length = 161 Score = 110 bits (277), Expect = 1e-24 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 9/154 (5%) Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + E L+ + E I+ Y E I T+ + S+K+ N++ NA Sbjct: 5 MPMEMADLNAVLGEVIAAESGYERE----IETALYPGSIEVKMHPLSIKRAVANMVVNAA 60 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 + G I +S+ T +V D G G+ + + +PF + +++ GTGL Sbjct: 61 RYG--NGWIKVSS-GTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSAR--TISGTGL 115 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL + + +VD + G + ++ G I P+ Sbjct: 116 GLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPV 149 >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Score = 107 bits (269), Expect = 1e-23 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 8/152 (5%) Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718 PV + + + A + + + S I+ ++ N ++NA+ Sbjct: 5 HVPVDITDLLDRAAHDAARIYPDLDVSLVPS---PTCIIVGLPAGLRLAVDNAIANAVKH 61 Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 + ++ + +S V + + D G G+ E + + F + + G+GLGL Sbjct: 62 GGAT--LVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA---SHSGSGLGL 116 Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 L + G + ++P G + + P Sbjct: 117 ALVAQQAQLHGGTASLENSPLGGARLVLRLPG 148 >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Score = 106 bits (266), Expect = 2e-23 Identities = 52/368 (14%), Positives = 117/368 (31%), Gaps = 47/368 (12%) Query: 491 DILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQ--------TLEKITLGSTKEEKLLSL 541 D P + E+ P ++ Y L ++Q EK + ++E + L Sbjct: 2 DSGSSPAS---ERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRL 58 Query: 542 RIIIK---KLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597 I+K LP + + ++ + W Q +L K + +++ DF V Sbjct: 59 ANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRN 118 Query: 598 TPLTAII----GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653 I G E ++ P+ + + + S + ++N + + Sbjct: 119 RHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGK 178 Query: 654 KMNLH-------FEPVSLDEAVSEAISLVQLYANEKRI--------LIRTSFANNIPRIL 698 H ++ E + + + + I + +++ Sbjct: 179 GSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVV 238 Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQI------IISTTHTSNEEVILRVRDTGVGMTNYE 752 + + + NA+ T I NE++ +++ D G G+ + Sbjct: 239 YVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRK 298 Query: 753 LEKAMKPF------GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +++ ++ S+ + G G GLP+++ G ++S GT I Sbjct: 299 IDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVI 358 Query: 807 IFPLYDTS 814 T Sbjct: 359 YIKALSTD 366 >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Score = 105 bits (262), Expect = 6e-23 Identities = 39/297 (13%), Positives = 85/297 (28%), Gaps = 35/297 (11%) Query: 545 IKKLPFSSCYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600 I LP + + + Q L + + + SDF+ + Sbjct: 55 IDILPTQL---VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHH 111 Query: 601 TAIIG----FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656 + E P+ N + + + ++N + I Sbjct: 112 NVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNP 171 Query: 657 LH----FEPVSLDEAVSEAISLVQLYANE--------KRILIRTSFANNIPRILADLRSV 704 H + V +A ++ ++ K + F + I+ + Sbjct: 172 SHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHL 231 Query: 705 KQIALNILSNAIHFTPSGGQ------IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 + + NA+ T + I E++ +++ D G G+ +++ Sbjct: 232 HHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFS 291 Query: 759 PF------GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809 + NS+ G G GLP+++ G ++S GT I Sbjct: 292 YTYSTAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLK 348 >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Score = 104 bits (261), Expect = 7e-23 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 7/154 (4%) Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716 + F +L+E + E L + + I N R+ AD +KQ+ +N++ NAI Sbjct: 1 MEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAI 60 Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776 T G+I I T+ +V + V ++G + EK PF + +GTGL Sbjct: 61 EATGENGKIKI-TSEDMYTKVRVSVWNSGPPIPEELKEKIFSPF------FTTKTQGTGL 113 Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 GL + + +++ G G + P Sbjct: 114 GLSICRKIIEDEHGGKIWTENRENGVVFIFEIPK 147 >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Score = 99.0 bits (246), Expect = 4e-21 Identities = 32/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%) Query: 539 LSLRII-IKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596 L+ + + LP + ++ + W Q +L + + ++ +FL + Sbjct: 70 LANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVR 129 Query: 597 RTPLTAII----GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 + G E + F P + + + + ++N + ++ Sbjct: 130 NRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDT 189 Query: 653 GKMNLHF-----EPVSLDEAVSEAISLVQLYANEK--------RILIRTSFANNIPRILA 699 ++ ++ + V +A ++ + + +++ Sbjct: 190 NPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVY 249 Query: 700 DLRSVKQIALNILSNAIHFTP-------SGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + + + N++ T G + + E++ +++ D G G+ + Sbjct: 250 VPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRK 309 Query: 753 LEKAMKPF------GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 +++ + ++ G G GLP+++ G ++S GT I Sbjct: 310 IDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVI 369 Query: 807 IFPLYDTS 814 + Sbjct: 370 YLKALSSE 377 >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3 Length = 160 Score = 90.1 bits (223), Expect = 2e-18 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 18/166 (10%) Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714 + S+ + ++LV + + + + ++P + D ++Q+ LNI+ N Sbjct: 1 LPGTRVTESIHKVAERVVTLVSMEL-PDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRN 59 Query: 715 AIHFTPSGGQIIISTTHTS----------NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764 A+ G II T T+ + V D G G+ + + P Sbjct: 60 ALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPM---- 115 Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 R GTGLGL +A+ ++D + GK S P T + P+ Sbjct: 116 --VSGREGGTGLGLSIARNLIDQHSGKIEFTSWP-GHTEFSVYLPI 158 >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Score = 89.0 bits (220), Expect = 4e-18 Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 30/301 (9%) Query: 539 LSLRII-IKKLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEI 596 L+ + I LP + ++ + W + + ++ S F + Sbjct: 48 LANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIR 107 Query: 597 RTPLTAIIG----FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652 + E P+ N + + S + ++N I + Sbjct: 108 NRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGST 167 Query: 653 GKMNLH-----FEPVSLDEAVSEAISLVQ-------LYANEKRILIRTSFANNIP-RILA 699 + ++ E V +A + + + + + I + + P ++ Sbjct: 168 NPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVY 227 Query: 700 DLRSVKQIALNILSNAIHFTPSGGQI------IISTTHTSNEEVILRVRDTGVGMTNYEL 753 + + + NA+ T + I E++ +++ D G G+ ++ Sbjct: 228 VPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKI 287 Query: 754 EKAMKPFGQIPNSQQIRG-----EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 E+ + Q G G GLP+++ G +FS GT I Sbjct: 288 ERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYL 347 Query: 809 P 809 Sbjct: 348 K 348 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 88.1 bits (218), Expect = 7e-18 Identities = 123/686 (17%), Positives = 203/686 (29%), Gaps = 277/686 (40%) Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK---------D 251 F ++++ + + E + F+ P L V Y + D Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-----VGKFLGYVSSLVEPSKVGQFD 81 Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTK----------KQYFGTLQNNSKES 299 VL LT E+ E D H + L Q K Y T + +K Sbjct: 82 QVLNL----CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKRP 136 Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPSF--L--LL 351 F+ S SA F + + GN + F L L Sbjct: 137 FD------KKSNSALFRAVGE------GNAQL----VAIFGGQGN---TDDYFEELRDLY 177 Query: 352 TKYKS-VDDI--EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--N 406 Y V D+ A LS L+ +A K ++ + L+ ++W N Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTL----DAEK---VF---------TQGLNILEWLEN 221 Query: 407 RENSLAMTFIPFEKANQF----PENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSI 457 N P + P + P G+ + + + +L S Sbjct: 222 PSN------TP---DKDYLLSIPISCPLIGV------IQLAHYVVTAKLLGFTPGELRSY 266 Query: 458 LEAT---SDGI---AII----NREGIILSTNRAVSKLF--------GYPVEDILRKPFTV 499 L+ S G+ I + E +S +A++ LF YP + P ++ Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL---PPSI 323 Query: 500 F---LEQN--TPSVMNHYLTEILSL-DL-RQTLEKITLGST-----KEEKL-LSLR---- 542 LE N PS M LS+ +L ++ ++ + T +++ +SL Sbjct: 324 LEDSLENNEGVPSPM-------LSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAK 375 Query: 543 -IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601 +++ P S Y L + L AK + + S R P Sbjct: 376 NLVVSGPP-QSLYGLNLT-----------LRKAKAPSGLDQS-------------RIP-- 408 Query: 602 AIIGFSE---VIKNQRFGPLGNP---RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655 FSE N RF P+ +P + A+ D I DL+ + + K Sbjct: 409 ----FSERKLKFSN-RFLPVASPFHSHLLVPAS--DL-------INKDLVKNNVSFNAKD 454 Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI-------- 707 + PV Y +R + RI V I Sbjct: 455 -IQI-PV---------------YDTFDGSDLRVLSGSISERI------VDCIIRLPVKWE 491 Query: 708 -ALNILSNAIH---FTPSGGQIIISTTHTSNEEVILRVRDTGVG-MTNYELEKAMKPFGQ 762 A H F P GG S G+G +T+ Sbjct: 492 TTTQ--FKATHILDFGP-GG---AS----------------GLGVLTH------------ 517 Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDAN 788 + + +GTG+ + +A + D N Sbjct: 518 -----RNK-DGTGVRVIVAGTL-DIN 536 Score = 82.3 bits (203), Expect = 4e-16 Identities = 111/569 (19%), Positives = 184/569 (32%), Gaps = 204/569 (35%) Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-----PKLSDNNAIK-----P 383 SHG+L L+ T + S L + P+ ++ A P Sbjct: 9 LTLSHGSL---EHVLLVPTASFFI--------ASQLQEQFNKILPEPTEGFAADDEPTTP 57 Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE------PED 437 L +++ + L + FE N + + N I ++ Sbjct: 58 AELVGKFLGYVSSLVEPSK-VGQFDQVLNLCLTEFE--NCY---LEGNDIHALAAKLLQE 111 Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497 DT + K K +++ + R ++ S LF V + + Sbjct: 112 NDTTLVKTK---------ELIKNYITARIMAKRP----FDKKSNSALFR-AVGEGNAQLV 157 Query: 498 TVFLEQ-NTPSVMNHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRIIIKKLP--F 550 +F Q NT + Y E L DL QT + L E L L + Sbjct: 158 AIFGGQGNT----DDYFEE-LR-DLYQTYHVLVG--DLIKFSAETLSEL----IRTTLDA 205 Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL--ARVSHEIRTPLTAIIG--- 605 ++ + +I EW L + ++ D+L +S PL IG Sbjct: 206 EKVFTQGL-NILEW------LENP------SNTPDKDYLLSIPIS----CPL---IGVIQ 245 Query: 606 ---FSEVIKNQRFGPLG-NPRYIEYANYIDRSG------NLVLDIVNDLLDISKIESGKM 655 + K LG P E +Y+ G LV + I++ +S Sbjct: 246 LAHYVVTAKL-----LGFTPG--ELRSYL--KGATGHSQGLVTAVA-----IAETDS--- 288 Query: 656 NLHFEPVSLDEAVSEAISLV--------QLYANEKRILIRTSFANNIPRILAD------- 700 +E S +V +AI+++ + Y TS P IL D Sbjct: 289 ---WE--SFFVSVRKAITVLFFIGVRCYEAYP-------NTSLP---PSILEDSLENNEG 333 Query: 701 -----LRSVKQIALNIL------SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG---- 745 L S+ + + +N+ H P+G Q+ IS + + V+ +G Sbjct: 334 VPSPML-SISNLTQEQVQDYVNKTNS-HL-PAGKQVEISLVNGAKNLVV-----SGPPQS 385 Query: 746 -VGMTNYELEKAMKPFGQ----IPNSQ-----QIRGEGTGLGLP---------LAKA--M 784 G+ N L KA P G IP S+ R LP L A + Sbjct: 386 LYGL-NLTLRKAKAPSGLDQSRIPFSERKLKFSNRF------LPVASPFHSHLLVPASDL 438 Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813 ++ ++ K + S AK +I P+YDT Sbjct: 439 INKDLVKNNV-SFNAK----DIQIPVYDT 462 Score = 36.5 bits (84), Expect = 0.027 Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 40/180 (22%) Query: 643 DLLDISKIES---GKMNLHFEPVS----LDEAVSEAISLVQLYANEKRILIRTSFANNIP 695 DL SK + + HF+ LD ++ ++L + EK IR +++ I Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693 Query: 696 RILAD--LRSVKQIA-LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752 + D L++ K +N S + F G ++S T + + L Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKG--LLSATQFTQPALTL------------- 1738 Query: 753 LEKA----MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808 +EKA +K G IP G G LA ++ D + S +L+E++F Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALA-SLAD-------VMSIE---SLVEVVF 1787 Score = 35.3 bits (81), Expect = 0.050 Identities = 55/374 (14%), Positives = 97/374 (25%), Gaps = 167/374 (44%) Query: 64 NTN-YLDSE-----NT---FVFDPI-------------PRTVR--FTWNIDAHGYLKEIS 99 NT+ Y + E T V D I FT ++ +L+ Sbjct: 165 NTDDYFE-ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-P 222 Query: 100 EELPKTIGNY------AFKMIGM-RLCD--VS-DILHIDPNNHIGDLLKR--------Q- 140 P +Y + +IG+ +L V+ +L P G+L Q Sbjct: 223 SNTPDK--DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP----GELRSYLKGATGHSQG 276 Query: 141 ----------NTW------------------------YGKTTLWPI---------EGTNL 157 ++W Y T+L P EG Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-- 334 Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSS 216 P P+ S + + ++K SHL K+ S Sbjct: 335 --PS-----PMLS-------ISNL-----------TQEQVQDYVNKTNSHLPAGKQVEIS 369 Query: 217 VEKEKYDIFSQQS-----PPP-------HLRMKNKVSSLTEYYAHKDD--VLKTEKYPLL 262 + + ++ PP LR K K S D + +E+ Sbjct: 370 L------VNGAKNLVVSGPPQSLYGLNLTLR-KAKAPS------GLDQSRIPFSERKLKF 416 Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH---------RNHPSLSA 313 ++ LP FH+ ++ K + + + + L Sbjct: 417 SN--RFLPVASPFHS----HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470 Query: 314 YFDEGENLTPETVD 327 +++ VD Sbjct: 471 L---SGSISERIVD 481 Score = 34.5 bits (79), Expect = 0.10 Identities = 39/223 (17%), Positives = 68/223 (30%), Gaps = 79/223 (35%) Query: 5 SIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSN--FTDQNQESV 62 S+++ ++++ S G Q L G K + P +QS F+ + + Sbjct: 369 SLVNGAKNLVVS---GPPQSLY------GLNLTLRKAKAP--SGLDQSRIPFS-ERKLKF 416 Query: 63 SNTNYLDSENTFVFDPIPRTVRFTWNIDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDV 121 SN F P+ F H L S+ + K + + Sbjct: 417 SNR----------FLPV--ASPF------HSHLLVPASDLINKDLVKNNVSF------NA 452 Query: 122 SDILHIDP--NNHIG-DLLKRQNTWYGK----------TTL---WPIEGTNLYVP----I 161 D + I P + G DL R L W T + Sbjct: 453 KD-IQI-PVYDTFDGSDL--RV---LSGSISERIVDCIIRLPVKWE-TTTQF--KATHIL 502 Query: 162 D-----LAAL-PIYSRNREFSGFRGFGIVHVNRVDNDP-RALG 197 D + L + RN++ +G R ++ +D +P G Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVR---VIVAGTLDINPDDDYG 542 >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* Length = 379 Score = 70.5 bits (171), Expect = 2e-12 Identities = 40/267 (14%), Positives = 78/267 (29%), Gaps = 58/267 (21%) Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644 K D L + E+ + I+ + + +D S + + I DL Sbjct: 10 KLDNLMDLMGELVIARSRILETLKKYNIKE---------------LDESLSHLSRITLDL 54 Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS- 703 ++ + V + + +V+ A + + + Sbjct: 55 QNVV--------MKIRMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEE 106 Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTS-----------NEEVILRVRDTGVGMTNY- 751 + + L++L NAI + I+ V++ V D G G+ Sbjct: 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 166 Query: 752 ----------------------ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789 E+ + G + G G+G+ + K +V++ Sbjct: 167 IIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLN 226 Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816 G I S KGT + I PL Sbjct: 227 GSMGIESEKDKGTKVTIRLPLTLAIIC 253 >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} Length = 124 Score = 65.0 bits (158), Expect = 7e-11 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 3/124 (2%) Query: 447 MEIEVM-QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505 M ++++ Q + D I + + +G I+ N+ L+GY E + +P + Sbjct: 1 MNVDILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGD 60 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISE 563 + + + + T E L + + DI++ Sbjct: 61 TEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITK 120 Query: 564 WKQE 567 K+E Sbjct: 121 RKKE 124 >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Length = 189 Score = 62.7 bits (151), Expect = 3e-10 Identities = 31/184 (16%), Positives = 60/184 (32%), Gaps = 35/184 (19%) Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTP 720 V + + +V+ A + + + + + + L++L NAI Sbjct: 5 VPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGI 64 Query: 721 SGGQI-----------IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769 + +I + V++ V D G G+ ++ + G I S+ Sbjct: 65 EPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAA 124 Query: 770 R-----------------------GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 G G+G+ + K +V++ G I S KGT + I Sbjct: 125 TLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTI 184 Query: 807 IFPL 810 PL Sbjct: 185 RLPL 188 >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Score = 58.4 bits (141), Expect = 6e-09 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 7/112 (6%) Query: 700 DLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 R++ Q ++ N++ T G +I I + + + V D G+G+ E+ Sbjct: 29 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 88 Query: 755 KAMKPFGQIPNSQQIRGEGT-GLGLPLAKAMVDANMGKF-YIFSTPAKGTLI 804 A + G GLG+ A + K I ++P I Sbjct: 89 NAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRI 140 >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Score = 53.2 bits (127), Expect = 2e-07 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 28/156 (17%) Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713 +M+L F S +E+ + R+ + +F + + +L +K + ++ Sbjct: 4 EMHLQFSARSENESFA-------------RVTVA-AFVAQLDPTMDELTEIKTVVSEAVT 49 Query: 714 NAIHF---TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770 NAI G + IS + V L VRD GVG+ + E+A +P Sbjct: 50 NAIIHGYNNDPNGIVSISVIIE-DGVVHLTVRDEGVGIPDI--EEARQPLFTTKPE---- 102 Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806 E +G+G + + M + + S KGT + + Sbjct: 103 LERSGMGFTIMENF----MDEVIVESEVNKGTTVYL 134 >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} Length = 126 Score = 52.8 bits (126), Expect = 3e-07 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 + LE D I IINREG +L N AV K GY E+++ + L E Sbjct: 3 NFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAE 62 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566 + + +++L RI K C + D+S+ ++ Sbjct: 63 LFA-GKKESLPLSLEKKEGTSIPAKARIWQGKWHNEPCLFAIIKDLSKEER 112 >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protein, nucleotide-binding, transcription regulation, activator, repressor; HET: PG4; 2.3A {Escherichia coli} Length = 190 Score = 52.5 bits (125), Expect = 4e-07 Identities = 12/71 (16%), Positives = 27/71 (38%) Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490 I + E E + L ++LEA + + ++ + + N A +LFG ++ Sbjct: 59 RRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLD 118 Query: 491 DILRKPFTVFL 501 + + Sbjct: 119 RLRNHTAAQLI 129 >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} Length = 129 Score = 50.7 bits (121), Expect = 1e-06 Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 + ++ ++ + ++N G I S N+ ++L P + + + FL ++ + ++ Sbjct: 8 TIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNL 67 Query: 513 LTEILSLDLRQTL-----EKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDI 561 L+ + L + T K + + I +P + + MHD+ Sbjct: 68 LSHDVQLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPGHEPMFVMVMHDL 122 >1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} SCOP: a.30.2.1 Length = 67 Score = 50.2 bits (120), Expect = 2e-06 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 10/76 (13%) Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633 A + + ++ +A VSH++RTPLT I +E++ Q A I++ Sbjct: 2 AAGVKQLADD-RTLLMAGVSHDLRTPLTRIRLATEMMSEQD---------GYLAESINKD 51 Query: 634 GNLVLDIVNDLLDISK 649 I+ +D + Sbjct: 52 IEECNAIIEQFIDYLR 67 >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli K12} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* Length = 167 Score = 49.9 bits (118), Expect = 2e-06 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 4/120 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 LE G +IN ++ N A KL+GY E+++ + + ++ Y+ Sbjct: 44 PALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRH 103 Query: 516 ILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + E + + Y + D S +K + Sbjct: 104 NREGGKARVEGMSRELQLEKKDGSKIWTRFALSKVSAEGKVYYLALVRDASVEMAQKEQT 163 >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: 3PB; 1.80A {Rhodococcus SP} Length = 118 Score = 48.2 bits (114), Expect = 7e-06 Identities = 12/108 (11%), Positives = 34/108 (31%), Gaps = 6/108 (5%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515 ++ G ++ + I+ N + +++L + T L + S + + Sbjct: 16 NLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRK 75 Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563 +L+ Q +L + + S + D++ Sbjct: 76 VLATGREQQTRVDSL--YSPGMTIEVTAA----ADSGALVVHFRDVTA 117 >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Length = 192 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/224 (9%), Positives = 50/224 (22%), Gaps = 40/224 (17%) Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617 M D+S+ ++E +S E L H+ L I G + K R Sbjct: 1 MKDVSKNQEEN--ISDTALTNELI-----HLLGHSRHDWMNKLQLIKGNLSLQKYDRV-- 51 Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677 E L A + Sbjct: 52 --FEMIEEMVIDAKHESKLSNLKT--------------------------PHLAFDFLTF 83 Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSN 734 + + I + A + + ++ + + + T + Sbjct: 84 NWKTHYMTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPD 143 Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778 ++IL + G + + + + + + Sbjct: 144 RQLILYLDFHGAFADPSAFDDIRQNGYEDVDIMRFEITSHECLI 187 >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} Length = 152 Score = 47.0 bits (111), Expect = 2e-05 Identities = 15/127 (11%), Positives = 40/127 (31%), Gaps = 13/127 (10%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-------LEQNT 505 L +L+ S + I+ + +I+ N + E + K L++ Sbjct: 23 LLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKI 82 Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC------YSLTMH 559 + + + S + + L + + ++ +P S L ++ Sbjct: 83 DTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVY 142 Query: 560 DISEWKQ 566 D++ Sbjct: 143 DVTIQAS 149 >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 Length = 129 Score = 46.1 bits (109), Expect = 3e-05 Identities = 11/46 (23%), Positives = 21/46 (45%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + +A G ++ G+I NR S+L G E ++ + F + Sbjct: 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEV 71 >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen fixation, PER-ARNT-SIM, metal-binding, PAS, iron; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* Length = 119 Score = 45.0 bits (105), Expect = 7e-05 Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521 D + +I+ GII + A +LFG+ + + + + + + S + Y++ + Sbjct: 3 PDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSD 62 Query: 522 RQTL----EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571 + + L I + ++ + D++E +Q + +L Sbjct: 63 PHIIGIGRIVTGKRRDGTTFPMHLSIGEMQSGGEPYFTGFVRDLTEHQQTQARL 116 >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Length = 399 Score = 44.2 bits (104), Expect = 1e-04 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 25/115 (21%) Query: 699 ADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755 +D+ + + NA+ + I+++ + V V D G + Sbjct: 293 SDIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKD--HRD- 349 Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 G G GL +A+A+V A GT + L Sbjct: 350 --------------GARGRGRGLAMAEALVSE-AR----IMHGAGGTTATLTHRL 385 >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} Length = 142 Score = 43.7 bits (103), Expect = 1e-04 Identities = 13/124 (10%), Positives = 41/124 (33%), Gaps = 4/124 (3%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYL 513 + S G+ N + + + K+ GY ++ + + + + + L Sbjct: 13 LAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAAL 72 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKL 571 L +E + + + + R + D+++ K++++ L Sbjct: 73 KAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDAL 132 Query: 572 SHAK 575 ++ Sbjct: 133 RVSR 136 >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Score = 43.3 bits (100), Expect = 2e-04 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 700 DLRSVKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754 R++ Q ++ N++ T G +I I + + + V D G+G+ E+ Sbjct: 28 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 87 Query: 755 KAMKPFGQIPNSQQIRGEG-TGLGLPLAKAMVDANMGKFYIFSTPAKG 801 A + G GLG+ A + K T Sbjct: 88 NAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVN 135 >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} Length = 185 Score = 43.2 bits (101), Expect = 2e-04 Identities = 16/145 (11%), Positives = 40/145 (27%), Gaps = 10/145 (6%) Query: 456 SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I E + + + ++ N A D + +P + + L Sbjct: 41 RIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPL--LDTVGQPAREVYPELEGQQIYEMLD 98 Query: 515 EILSLDLRQTLEKITL-----GSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQE 567 + Q+ + L GS EE+ + + L + D++ + Sbjct: 99 RVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRA 158 Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592 + + + + D + Sbjct: 159 RQAAEARVEELSERYRNVRDSATVM 183 >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transferase, flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 Score = 43.0 bits (99), Expect = 3e-04 Identities = 7/48 (14%), Positives = 17/48 (35%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++I + +G IL N + Y E+++ + + Sbjct: 2 VSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRD 49 Score = 34.9 bits (78), Expect = 0.066 Identities = 20/175 (11%), Positives = 53/175 (30%), Gaps = 11/175 (6%) Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397 G + YAN +F +++Y + E+ G ++++ Sbjct: 8 QGRILYANDNFCAVSRY-GRE--ELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEF 64 Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457 + + + +++ E ++ +L Sbjct: 65 CNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRR--------DITAQKEAEAQLARLKQA 116 Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 ++A S+ I + +R G I+ N A+ + G ++L + ++ Sbjct: 117 MDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAA 171 >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332 Score = 42.5 bits (99), Expect = 3e-04 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 454 LCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L + LE I + + I+ + + +L Y E+IL + T Sbjct: 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATV 72 Query: 511 HYLTEIL 517 + + + Sbjct: 73 RKIRDAI 79 >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 Length = 114 Score = 41.3 bits (96), Expect = 9e-04 Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 456 SILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 ++ + I ++ + IL N L GY +D++ + T F ++ V+ Sbjct: 2 AMDPEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSE 61 Query: 515 EILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562 E + D + + ++ + + + + +K++ C + + + Sbjct: 62 EHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERRLCCVVVLEPVE 113 >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} Length = 309 Score = 40.9 bits (94), Expect = 0.001 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 448 EIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF 500 ++E + I++ ++ G IL + V+ +F + F F Sbjct: 11 QVEGITSEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEF 64 >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} Length = 118 Score = 40.2 bits (93), Expect = 0.002 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 9/84 (10%) Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491 G+EP ++ T +R+ ++L++ +G+ ++ G + N A +L Y Sbjct: 4 GLEPYEISTLFEQRQ---------AMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQ 54 Query: 492 ILRKPFTVFLEQNTPSVMNHYLTE 515 K T+ + ++ L + Sbjct: 55 DDEKLSTLSHSWSQVVDVSEVLRD 78 >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A Length = 120 Score = 40.0 bits (93), Expect = 0.002 Identities = 12/117 (10%), Positives = 36/117 (30%), Gaps = 11/117 (9%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLT 514 + G+ + R+ +I N ++ +F + I R ++ + + ++ Sbjct: 7 TAFHLAPIGLVLS-RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERIS 65 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQ 566 ++ ++I + E + T D+S ++ Sbjct: 66 PVMIAHGSYADDRIMKRAGGELFWCHVTGR----ALDRTAPLAAGVWTFEDLSATRR 118 >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, signaling protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* Length = 132 Score = 39.3 bits (90), Expect = 0.004 Identities = 20/122 (16%), Positives = 45/122 (36%), Gaps = 3/122 (2%) Query: 456 SILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L+ G+ I + + I+ N+ ++ GY E+IL K ++T Sbjct: 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDN 62 Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572 + L T++ L I ++ + + +DI++ K+ + L Sbjct: 63 IRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFVGIQNDITKQKEYEKLLE 122 Query: 573 HA 574 + Sbjct: 123 DS 124 >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal transduction, phototropin1; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* Length = 146 Score = 38.5 bits (88), Expect = 0.007 Identities = 17/148 (11%), Positives = 47/148 (31%), Gaps = 10/148 (6%) Query: 454 LCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510 L + LE I + + I+ + + +L Y E+IL + T Sbjct: 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATV 63 Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568 + + + T++ I + ++ + + + D +E ++ Sbjct: 64 RKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDA 123 Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEI 596 + I + ++ + + E+ Sbjct: 124 AEREGVMLIKK-----TAENIDEAAKEL 146 >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} Length = 118 Score = 38.1 bits (88), Expect = 0.007 Identities = 8/65 (12%), Positives = 16/65 (24%) Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507 E+E ++ + + L N A ++ Y E +L Sbjct: 9 ELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALH 68 Query: 508 VMNHY 512 Sbjct: 69 DWEEI 73 >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Score = 37.9 bits (87), Expect = 0.009 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%) Query: 702 RSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758 RS+ + NA+ G I++ T + V + + D G G+ ++ K Sbjct: 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFA 95 Query: 759 PFGQ---IPNSQQIRGEGTGLGLPLAKA 783 +Q RG G+G+ A Sbjct: 96 KLLYGSRFHALKQSRG-QQGIGISAAVL 122 >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... Length = 125 Score = 37.8 bits (87), Expect = 0.010 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYL 513 L+ + G ++ +G IL N A + G + ++ K F V ++P + Sbjct: 21 GQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFK 80 Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561 + S +L E + +++ +KK Y + + + Sbjct: 81 EGVASGNLNTMFE---YTFDYQMTPTKVKVHMKKALSGDSYWVFVKRV 125 >1wa9_A Period circadian protein; PAS domain, circadian rhythm, clock protein, phosphorylation, polymorphism; 3.15A {Drosophila melanogaster} PDB: 3gec_A Length = 368 Score = 37.8 bits (86), Expect = 0.011 Identities = 39/300 (13%), Positives = 77/300 (25%), Gaps = 25/300 (8%) Query: 339 GNLFYANPSFLLLTKY-------KSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPV 384 G + Y PS + Y +S D A ++T + + + Sbjct: 18 GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIPIAESRGSVPKDAK 77 Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444 + R S + E P N + + + Sbjct: 78 STFCVMLRRYRGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVI 137 Query: 445 RKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500 I + + + + GII + A GY +D++ + F Sbjct: 138 CATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFY 197 Query: 501 ----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554 L + + + L LL P+S + Sbjct: 198 HHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEF 257 Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII-GFSEVIKNQ 613 + H + + ++ N A K S R+ +I L + S+ +K + Sbjct: 258 VVGHHRVFQGPKQCNVFEAAPTCKLKISEEAQSRNTRIKEDIVKRLAETVSRPSDTVKQE 317 Score = 36.2 bits (82), Expect = 0.030 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 461 TSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 D I +GI+L T +++ + GYP + L + F F+ + +T + Sbjct: 5 KEDSFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIP 64 Query: 519 LDLRQTLEKITLGST 533 + + ST Sbjct: 65 IAESRGSVPKDAKST 79 >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein structure initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 Score = 36.8 bits (84), Expect = 0.021 Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 1/96 (1%) Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475 +P E + + I+ + + +L +I EA + I+++ + Sbjct: 203 LPKEVQQALRGQPLEFDKTQLKREEDIDLGTGYLNIEELKAIFEALPVDVTFIDKDDRVR 262 Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511 + ++F + R ++ V Sbjct: 263 FFSP-GERIFTRTPSVLGRPVQLCHPPKSVYVVNKI 297 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Length = 254 Score = 36.6 bits (84), Expect = 0.025 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 721 SGGQIIISTTHTSNEEVILR-VRDTGVGMTNYE-LEKAMKPFGQIPNSQQIRGEGTGLGL 778 SG + ++ + S + + ++ +G+ +T YE E + + +G + Sbjct: 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVT 69 >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A Length = 158 Score = 36.0 bits (82), Expect = 0.035 Identities = 12/132 (9%), Positives = 34/132 (25%), Gaps = 10/132 (7%) Query: 456 SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514 I E + + + ++ N A D + +P + + L Sbjct: 21 RIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPL--LDTVGQPAREVYPELEGQQIYEMLD 78 Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------SCYSLTMHDISEWKQE 567 + Q+ + L + + + R + L + D++ + Sbjct: 79 RVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRA 138 Query: 568 KNKLSHAKKIAE 579 + + Sbjct: 139 RQAAEARVEELS 150 >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein, APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} Length = 115 Score = 35.6 bits (81), Expect = 0.042 Identities = 9/57 (15%), Positives = 20/57 (35%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +IL I++ I N A LF + I+ + + ++ + + Sbjct: 11 AILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLT 67 >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} Length = 114 Score = 35.6 bits (81), Expect = 0.042 Identities = 11/64 (17%), Positives = 23/64 (35%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +L E +A+ +RE L+ +R + +G DIL + + + Sbjct: 4 RLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVH 63 Query: 513 LTEI 516 + Sbjct: 64 RRGL 67 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 35.7 bits (81), Expect = 0.043 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 24/81 (29%) Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---------DISEWKQ------ 566 R T E ++ +EE+ R K+L S M D+ EW Q Sbjct: 79 RLTQEPESIRKWREEQ----R---KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131 Query: 567 EKNKLSHAKKIAEKESSHKSD 587 EKNK+++ +IA+K + D Sbjct: 132 EKNKINN--RIADKAFYQQPD 150 Score = 34.5 bits (78), Expect = 0.11 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 15/84 (17%) Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE-----KYDI--FSQ-QSPPPHL 234 I +R+ +P ++ K +++ L E+ +E+E K D+ ++Q QS Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE- 132 Query: 235 RMKNKVSSL---TEYYAHKD-DVL 254 KNK+++ +Y D D++ Sbjct: 133 --KNKINNRIADKAFYQQPDADII 154 >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* Length = 130 Score = 35.3 bits (80), Expect = 0.057 Identities = 10/119 (8%), Positives = 33/119 (27%), Gaps = 5/119 (4%) Query: 453 QLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509 +L + L + + I+ + + GY ++I+ + +T Sbjct: 7 ELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNE 66 Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566 + + + + L + K + ++S++ + Sbjct: 67 VAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTE 125 >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} Length = 111 Score = 33.6 bits (75), Expect = 0.17 Identities = 10/57 (17%), Positives = 22/57 (38%) Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513 L+ +D A++ G I+ + GY +++ FL + ++ Y Sbjct: 4 PLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYF 60 >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Length = 218 Score = 33.2 bits (74), Expect = 0.24 Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 2/54 (3%) Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810 + + G GL + ++ G +I + GT + + P Sbjct: 164 ITVSDDGTFKGEENSFSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPN 215 >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 2b02_A* 2k7s_A 2a24_B Length = 121 Score = 31.7 bits (71), Expect = 0.75 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 4/107 (3%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQ 523 I+ N EGI + GY +++L K F + + + + Sbjct: 15 ISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVL 74 Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQE 567 ++ +E + + P+S T ++ QE Sbjct: 75 SVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQE 121 >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Score = 31.7 bits (71), Expect = 0.78 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 14/142 (9%) Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715 N+ F + LD E + Q + + I+ + + V+ A ++ Sbjct: 1788 NVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEA-AFRYMAQG 1846 Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGT 774 H G+++I + + + P+ S I G Sbjct: 1847 KHI----GKVVIQVREEEQGPAPRGLPPIAL--------TGLSKTFCPPHKSYVITGGLG 1894 Query: 775 GLGLPLAKAMVDANMGKFYIFS 796 G GL LA+ + K + S Sbjct: 1895 GFGLQLAQWLRLRGAQKLVLTS 1916 >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Score = 31.6 bits (71), Expect = 0.82 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 ++ L + D GVGMT E+ G I S Sbjct: 72 DKRTLTISDNGVGMTRDEVI---DHLGTIAKS 100 >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} Length = 120 Score = 31.1 bits (69), Expect = 0.90 Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 +E I+I + + IL NRA + GY E++L K ++ TP ++ Sbjct: 9 QTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQA 65 >2vea_A Phytochrome-like protein CPH1; arginine finger, phosphorylation, tandem GAF domain, knot, kinase, receptor, PAS domain, chromophore; HET: CYC; 2.21A {Synechocystis SP} SCOP: d.110.2.1 d.110.2.4 d.110.3.9 Length = 520 Score = 31.3 bits (70), Expect = 1.0 Identities = 5/37 (13%), Positives = 13/37 (35%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + + I + + + G ED+L + Sbjct: 33 VVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVF 69 >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* Length = 149 Score = 30.4 bits (68), Expect = 1.6 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495 + R N + V +++ ++ I+ + A + GY ++L + Sbjct: 17 IQIMNRPNPQVELGPVDTSVALILCDLKQ-----KDTPIVYASEAFLYMTGYSNAEVLGR 71 Query: 496 PFTVF 500 Sbjct: 72 NCRFL 76 >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 Score = 30.1 bits (67), Expect = 1.9 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 E+ +L V DTGVGMT EL K G I S Sbjct: 90 EKNLLHVTDTGVGMTREELVKN---LGTIAKS 118 >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two- component system; HET: HEM; 1.40A {Rhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* Length = 130 Score = 30.0 bits (66), Expect = 2.2 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512 L SIL+ D + +G I+S N A + FGY E+++ + + + + + Y Sbjct: 17 HLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGY 76 Query: 513 LTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDIS 562 L ++ ++ + G K+ +++ + ++ ++ + D++ Sbjct: 77 LQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGERFFTGFIRDLT 130 >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 Score = 29.7 bits (66), Expect = 2.9 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 ++ L + D GVGMT E+ G I S Sbjct: 72 DKRTLTISDNGVGMTRDEVIDH---LGTIAKS 100 >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 Score = 29.3 bits (65), Expect = 3.8 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%) Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766 E+ +L +RD+G+GMT EL G I S Sbjct: 71 EQKVLEIRDSGIGMTKAELINN---LGTIAKS 99 >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliverdin, signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris CGA009} SCOP: d.110.2.1 d.110.3.9 Length = 337 Score = 29.0 bits (64), Expect = 4.2 Identities = 8/37 (21%), Positives = 13/37 (35%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501 + + I S + V L P +L P +L Sbjct: 46 FVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYL 82 >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} Length = 450 Score = 28.9 bits (63), Expect = 4.6 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKA 756 + + Q+ +L +A GG+++ +T NE+ I + ++L Sbjct: 360 KINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH---PEFKLVPL 416 Query: 757 MKPFG 761 P+ Sbjct: 417 KSPYD 421 >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* Length = 109 Score = 28.1 bits (62), Expect = 7.6 Identities = 3/44 (6%), Positives = 13/44 (29%), Gaps = 3/44 (6%) Query: 460 ATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500 + + + ++ + + GY +++L Sbjct: 1 GLRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFL 44 >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A Length = 117 Score = 27.8 bits (61), Expect = 9.6 Identities = 13/106 (12%), Positives = 35/106 (33%), Gaps = 3/106 (2%) Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524 ++ + + + +++L GY E++L + F M + + + Sbjct: 12 LSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVS 71 Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQE 567 + L L + + P + C + +SE ++ Sbjct: 72 GQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEKN 117 >3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_M Length = 178 Score = 27.9 bits (62), Expect = 9.8 Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 27/138 (19%) Query: 463 DGIAIINREGIILSTNRAVSKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518 I ++ E + +S +KL F K F + + L ++S Sbjct: 25 QKIVVVRAEELNISGEFFRNKLKYHDFLRKAT-AFNKTRGPFHFRAPSRIFYKALRGMVS 83 Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578 K G + +++L + K+++ + A ++ Sbjct: 84 -------HKTARG----------KAALERL---KVFEGIPPPYD--KKKRVVVPQALRVL 121 Query: 579 EKESSHKSDFLARVSHEI 596 + K L ++S + Sbjct: 122 RLKPGRKYTTLGKLSTSV 139 >2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Length = 177 Score = 28.0 bits (62), Expect = 9.8 Identities = 7/20 (35%), Positives = 10/20 (50%) Query: 392 TCIAASARLHTIQWNRENSL 411 C+AA A + + WN N Sbjct: 25 GCVAAVADRYAVYWNSSNPR 44 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0540 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 6,998,759 Number of extensions: 334567 Number of successful extensions: 953 Number of sequences better than 10.0: 1 Number of HSP's gapped: 890 Number of HSP's successfully gapped: 82 Length of query: 820 Length of database: 5,693,230 Length adjustment: 100 Effective length of query: 720 Effective length of database: 3,268,830 Effective search space: 2353557600 Effective search space used: 2353557600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 61 (27.7 bits)