HHsearch alignment for GI: 254780414 and conserved domain: COG0037
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning].
Probab=99.24 E-value=5e-10 Score=91.86 Aligned_cols=158 Identities=25% Similarity=0.286 Sum_probs=113.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCC
Q ss_conf 440366405640477999999862236-569999738955156--27899998862369857997588999999668988
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKN--EVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD 298 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD~GllRkn--E~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~D 298 (520)
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 99 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELV-EKLCEKLGIPLIVERVTDDLGRETLDGKS 99 (298)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH-HHHHHHCCCCEEEEEHHHHHHHCCCCCCC
T ss_conf 78589993787899999999998422573899997089886432899999-99999649984886204543100246767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC---CCCCCCEEEEEECCCCHHHHH---CC-CHHHHH
Q ss_conf 89999887565899999999743997099864622024542024---677763034430232011320---32-022378
Q gi|254780414|r 299 PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF---FGGPSSIIKSHHNVGGLPEHM---DM-KLVEPL 371 (520)
Q Consensus 299 PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~---~~~~~~~IKsHHNvgglp~~~---~~-~liEPl 371 (520)
T Consensus 100 ~c~~---c~~~R~~~l~~~a~~~-g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~------~~~~~~~~~~~~~~iRPL 169 (298)
T COG0037 100 ICAA---CRRLRRGLLYKIAKEL-GADKIATGHHLDDQAETFLMNLLRGSGLRGLR------GMPPKRPFEGGLLIIRPL 169 (298)
T ss_pred HHHH---HHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCHHHHH------CCCCCCCCCCCCEEECCC
T ss_conf 8799---9999999999999985-99989856784689999999986175224564------088524457886454757
Q ss_pred HHHHHHHHHHHHHHHCCCH
Q ss_conf 9873899999999819998
Q gi|254780414|r 372 KELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 372 ~~l~KdEVR~lg~~Lglp~ 390 (520)
T Consensus 170 ~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 170 LYVREKEIELYAKEKGLPY 188 (298)
T ss_pred CCCCHHHHHHHHHHCCCCE
T ss_conf 4688999999999759987