HHsearch alignment for GI: 254780414 and conserved domain: COG0482

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.52  E-value=3.4e-13  Score=114.56  Aligned_cols=161  Identities=27%  Similarity=0.388  Sum_probs=110.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CHH----HHHHHHHHCCCCCEEEEEHHHHHHHH--
Q ss_conf             440366405640477999999862236569999738955156---278----99998862369857997588999999--
Q gi|254780414|r  222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN---EVE----NIISLFKGYPNFPLRVVDASERFIRK--  292 (520)
Q Consensus       222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn---E~~----~v~~~~~~~~~~~l~~vda~~~Fl~~--  292 (520)
T Consensus         3 ~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~-va~~LGIp~~~vdf~~~y~~~V~   80 (356)
T COG0482           3 KKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAER-VADQLGIPLYVVDFEKEFWNKVF   80 (356)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCHHHHHHHHH-HHHHHCCCEEEECHHHHHHHHHH
T ss_conf             767999905777899999999976-9749999999641478886772567899999-99980995599846899888888


Q ss_pred             -------HCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHC--CCCCCCCEEEEEECC-CCH
Q ss_conf             -------66898-8899998875658999--9999974399709986462202454202--467776303443023-201
Q gi|254780414|r  293 -------LKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESIS--FFGGPSSIIKSHHNV-GGL  359 (520)
Q Consensus       293 -------L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~--~~~~~~~~IKsHHNv-ggl  359 (520)
T Consensus        81 ~~f~~~Y~~G~TPNPc----i~CN~~iKF~~~l~~a~~l-gad~iATGH-Yar~~~~~~~~~l~r~~D~~KDQsYfL~~~  154 (356)
T COG0482          81 EYFLAEYKAGKTPNPC----ILCNKEIKFKALLDYAKEL-GADYIATGH-YARQREDEGIELLLRGVDLNKDQSYFLYAL  154 (356)
T ss_pred             HHHHHHHHCCCCCCCC----HHCCHHHHHHHHHHHHHHC-CCCEEEEEE-EEEEECCCCCCCCCCCCCCCCCHHHEECCC
T ss_conf             8778998579999965----1048788999999999975-998578744-676543776000146787420300020126


Q ss_pred             -HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             -13203202237898738999999998199988
Q gi|254780414|r  360 -PEHMDMKLVEPLKELFKDEVRLLGKELRLPDS  391 (520)
Q Consensus       360 -p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~  391 (520)
T Consensus       155 ~~~ql~-~~lFPlG~l~K~evR~iA~~~gL~~a  186 (356)
T COG0482         155 SQEQLE-RLLFPLGDLEKLEVRPIAAEKGLPTA  186 (356)
T ss_pred             CHHHHH-HCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             887775-32256777777899999997599766