HHsearch alignment for GI: 254780414 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.52 E-value=3.4e-13 Score=114.56 Aligned_cols=161 Identities=27% Similarity=0.388 Sum_probs=110.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CHH----HHHHHHHHCCCCCEEEEEHHHHHHHH--
Q ss_conf 440366405640477999999862236569999738955156---278----99998862369857997588999999--
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN---EVE----NIISLFKGYPNFPLRVVDASERFIRK-- 292 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn---E~~----~v~~~~~~~~~~~l~~vda~~~Fl~~-- 292 (520)
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~-va~~LGIp~~~vdf~~~y~~~V~ 80 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAER-VADQLGIPLYVVDFEKEFWNKVF 80 (356)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCHHHHHHHHH-HHHHHCCCEEEECHHHHHHHHHH
T ss_conf 767999905777899999999976-9749999999641478886772567899999-99980995599846899888888
Q ss_pred -------HCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHC--CCCCCCCEEEEEECC-CCH
Q ss_conf -------66898-8899998875658999--9999974399709986462202454202--467776303443023-201
Q gi|254780414|r 293 -------LKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESIS--FFGGPSSIIKSHHNV-GGL 359 (520)
Q Consensus 293 -------L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~--~~~~~~~~IKsHHNv-ggl 359 (520)
T Consensus 81 ~~f~~~Y~~G~TPNPc----i~CN~~iKF~~~l~~a~~l-gad~iATGH-Yar~~~~~~~~~l~r~~D~~KDQsYfL~~~ 154 (356)
T COG0482 81 EYFLAEYKAGKTPNPC----ILCNKEIKFKALLDYAKEL-GADYIATGH-YARQREDEGIELLLRGVDLNKDQSYFLYAL 154 (356)
T ss_pred HHHHHHHHCCCCCCCC----HHCCHHHHHHHHHHHHHHC-CCCEEEEEE-EEEEECCCCCCCCCCCCCCCCCHHHEECCC
T ss_conf 8778998579999965----1048788999999999975-998578744-676543776000146787420300020126
Q ss_pred -HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf -13203202237898738999999998199988
Q gi|254780414|r 360 -PEHMDMKLVEPLKELFKDEVRLLGKELRLPDS 391 (520)
Q Consensus 360 -p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~ 391 (520)
T Consensus 155 ~~~ql~-~~lFPlG~l~K~evR~iA~~~gL~~a 186 (356)
T COG0482 155 SQEQLE-RLLFPLGDLEKLEVRPIAAEKGLPTA 186 (356)
T ss_pred CHHHHH-HCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 887775-32256777777899999997599766