HHsearch alignment for GI: 254780414 and conserved domain: COG0504
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism].
Probab=99.26 E-value=1.4e-11 Score=102.99 Aligned_cols=141 Identities=22% Similarity=0.333 Sum_probs=86.1
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEE---ECCCCCCCE-----------------
Q ss_conf 979999853889999999753768980899889977899998997096999---869866103-----------------
Q gi|254780414|r 51 PQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK---NSQSREFGR----------------- 110 (520)
Q Consensus 51 p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~---~~~~~EyG~----------------- 110 (520)
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~ 423 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVV 423 (533)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 88799689877675588999999998669986888566789999999985197657643548899986588335423677
Q ss_pred ----------EEEEECCCCCCCCCCCCCCCCEEEEEE--CCCHH-----HCCC-CCCCEEECCCC-CCEEEEEECCCCEE
Q ss_conf ----------667523886222787266553368600--22011-----0124-44211232398-31788986350011
Q gi|254780414|r 111 ----------AFIEIKKNCSLLKGMWEKGSKQQVWMS--HGDQV-----EHIP-EGFEVIASSDS-TPFAFIADEKRKYY 171 (520)
Q Consensus 111 ----------~~I~i~~~~~lf~gl~~~~~~~~VwmS--H~D~V-----~~lP-~gf~viA~S~~-~~iaai~~~~~~iy 171 (520)
T Consensus 424 ~lGGTmRLG~y~~~l~~gT-~a~~lY~---~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfF 499 (533)
T COG0504 424 DLGGTMRLGAYPCRLKPGT-LAAKLYG---KDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFF 499 (533)
T ss_pred CCCCEEECCCEEEECCCCC-HHHHHHC---CCCEEEECCCHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 6775004166101127886-8998738---77140021531330889999998689699998689986899983899648
Q ss_pred -EEEEEEHHHCCCH-HHHHHHHHHHH
Q ss_conf -2465212221520-25779987550
Q gi|254780414|r 172 -AVQFHPEVVHTVG-GSQLIDNFVHH 195 (520)
Q Consensus 172 -GVQFHPEV~hT~~-G~~iL~NFl~~ 195 (520)
T Consensus 500 v~~QfHPEf~SrP~~phPlf~~fv~A 525 (533)
T COG0504 500 VATQFHPEFKSRPLRPHPLFVGFVKA 525 (533)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98746631347899998347999999