HHsearch alignment for GI: 254780414 and conserved domain: COG0505

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.96  E-value=5.7e-28  Score=220.14  Aligned_cols=181  Identities=25%  Similarity=0.394  Sum_probs=134.1

Q ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCHHHHHCCCCEE
Q ss_conf             4488699998897057889988886594069852898988997239979999853889999-999753768980899889
Q gi|254780414|r    5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLD-IDSPQIPKEILESNIPLL   83 (520)
Q Consensus         5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap~~~~~I~~~~iPIL   83 (520)
T Consensus       177 ~~~~~Vv~iD~GvK~n--Ilr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPif  254 (368)
T COG0505         177 EPGKHVVVIDFGVKRN--ILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIF  254 (368)
T ss_pred             CCCCEEEEEECCCCHH--HHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             7776799997673177--99999977984999769899999985189979974899880677899999999864689837


Q ss_pred             EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCC-CCCE
Q ss_conf             977899998997096999869866103667523886222787266553368600220110--1244421123239-8317
Q gi|254780414|r   84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSD-STPF  160 (520)
Q Consensus        84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~-~~~i  160 (520)
T Consensus       255 GICLGHQllalA~Ga~T~KmkFGHrG~-------NhPV~d-l~-tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTv  325 (368)
T COG0505         255 GICLGHQLLALALGAKTYKMKFGHRGA-------NHPVKD-LD-TGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTV  325 (368)
T ss_pred             EECHHHHHHHHHCCCCEEECCCCCCCC-------CCCCCC-CC-CCEEEEEECCCCEECCHHHCCCCCEEEEEECCCCCC
T ss_conf             886888999986678643203688778-------967631-65-880899946886013822327776058981799970


Q ss_pred             EEEEECCCCEEEEEEEEHHHCCCHHHH-HHHHHHHHH
Q ss_conf             889863500112465212221520257-799875501
Q gi|254780414|r  161 AFIADEKRKYYAVQFHPEVVHTVGGSQ-LIDNFVHHV  196 (520)
Q Consensus       161 aai~~~~~~iyGVQFHPEV~hT~~G~~-iL~NFl~~I  196 (520)
T Consensus       326 EGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~  362 (368)
T COG0505         326 EGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELM  362 (368)
T ss_pred             CCEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             0245279863787148999989864477999999999