HHsearch alignment for GI: 254780414 and conserved domain: COG0505
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=99.96 E-value=5.7e-28 Score=220.14 Aligned_cols=181 Identities=25% Similarity=0.394 Sum_probs=134.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCHHHHHCCCCEE
Q ss_conf 4488699998897057889988886594069852898988997239979999853889999-999753768980899889
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLD-IDSPQIPKEILESNIPLL 83 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap~~~~~I~~~~iPIL 83 (520)
T Consensus 177 ~~~~~Vv~iD~GvK~n--Ilr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPif 254 (368)
T COG0505 177 EPGKHVVVIDFGVKRN--ILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIF 254 (368)
T ss_pred CCCCEEEEEECCCCHH--HHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 7776799997673177--99999977984999769899999985189979974899880677899999999864689837
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCC-CCCE
Q ss_conf 977899998997096999869866103667523886222787266553368600220110--1244421123239-8317
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSD-STPF 160 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~-~~~i 160 (520)
T Consensus 255 GICLGHQllalA~Ga~T~KmkFGHrG~-------NhPV~d-l~-tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTv 325 (368)
T COG0505 255 GICLGHQLLALALGAKTYKMKFGHRGA-------NHPVKD-LD-TGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTV 325 (368)
T ss_pred EECHHHHHHHHHCCCCEEECCCCCCCC-------CCCCCC-CC-CCEEEEEECCCCEECCHHHCCCCCEEEEEECCCCCC
T ss_conf 886888999986678643203688778-------967631-65-880899946886013822327776058981799970
Q ss_pred EEEEECCCCEEEEEEEEHHHCCCHHHH-HHHHHHHHH
Q ss_conf 889863500112465212221520257-799875501
Q gi|254780414|r 161 AFIADEKRKYYAVQFHPEVVHTVGGSQ-LIDNFVHHV 196 (520)
Q Consensus 161 aai~~~~~~iyGVQFHPEV~hT~~G~~-iL~NFl~~I 196 (520)
T Consensus 326 EGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~ 362 (368)
T COG0505 326 EGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELM 362 (368)
T ss_pred CCEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 0245279863787148999989864477999999999