HHsearch alignment for GI: 254780414 and conserved domain: PRK00143
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.66 E-value=1.5e-15 Score=131.34 Aligned_cols=162 Identities=27% Similarity=0.367 Sum_probs=112.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCEEEEEHHHHHHH-
Q ss_conf 4440366405640477999999862236569999738955156--------2789999886236985799758899999-
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN--------EVENIISLFKGYPNFPLRVVDASERFIR- 291 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn--------E~~~v~~~~~~~~~~~l~~vda~~~Fl~- 291 (520)
T Consensus 3 sk~rV~VamSGGVDSsVaA~LL~~~-Gy~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~v-a~~LgIp~~v~d~~~~f~~~ 80 (355)
T PRK00143 3 SKKRVVVGMSGGVDSSVAAALLKEQ-GYDVIGLFMKLWDDDDGSGGCCAEEDIADARAV-ADKLGIPLYVVDFAKEFWDN 80 (355)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECHHHHHHHH
T ss_conf 8888999916789999999999977-995899999887688777899857889999999-99869857996869987678
Q ss_pred --------HHCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCCC--CCCCCEEEEEEC-CC
Q ss_conf --------966898-8899998875658999--999997439970998646220245420246--777630344302-32
Q gi|254780414|r 292 --------KLKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESISFF--GGPSSIIKSHHN-VG 357 (520)
Q Consensus 292 --------~L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~~~--~~~~~~IKsHHN-vg 357 (520)
T Consensus 81 Vi~~f~~~Y~~G~TPNPc----v~CN~~IKFg~l~~~A~~l-gad~iATGH-YAri~~~~~~~~L~r~~D~~KDQSYfL~ 154 (355)
T PRK00143 81 VFDYFLDEYKAGRTPNPC----VLCNKEIKFKAFLDYALEL-GADYIATGH-YARIRDEDGRYELLRAVDPNKDQSYFLY 154 (355)
T ss_pred HHHHHHHHHHCCCCCCCC----HHCCCCCCHHHHHHHHHHC-CCCEECCCC-EEEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf 899999999769999973----3408723399999999873-998423352-5999915981899867889887205761
Q ss_pred CHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 011320320223789873899999999819998
Q gi|254780414|r 358 GLPEHMDMKLVEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 358 glp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
T Consensus 155 ~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gL~~ 187 (355)
T PRK00143 155 QLTQEQLAKLLFPLGELTKPEVREIAAEIGLPT 187 (355)
T ss_pred CCCHHHHHHEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 057988742075876773589999999758988