HHsearch alignment for GI: 254780414 and conserved domain: PRK12838
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed.
Probab=99.97 E-value=2.6e-30 Score=236.83 Aligned_cols=179 Identities=26% Similarity=0.468 Sum_probs=136.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCHHHHHCCCCEE
Q ss_conf 44886999988970578899888865940698528989889972399799998538899999-99753768980899889
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSPQIPKEILESNIPLL 83 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~~~iPIL 83 (520)
T Consensus 165 ~~~~~V~viD~GvK~n--Ilr~L~~rg~~V~VvP~~~~~~~i~~~~pDGiflSNGPGDP~~~~~~i~~vr~l~-~~~Pif 241 (356)
T PRK12838 165 NGGKHVALIDFGLKHS--ILRSLSKRGCNVTVLPYNASLEDIKNLNPDGIVLSNGPGDPKELQPYLPTIKDLA-SSYPIL 241 (356)
T ss_pred CCCEEEEEEECCCHHH--HHHHHHHCCCEEEEECCCCCCCHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEE
T ss_conf 9975799995883699--9999997898899989988754023249748994389989688788999999997-498889
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEE---ECCCHHH--CCC-CCCCEEECCC-
Q ss_conf 97789999899709699986986610366752388622278726655336860---0220110--124-4421123239-
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWM---SHGDQVE--HIP-EGFEVIASSD- 156 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~Vwm---SH~D~V~--~lP-~gf~viA~S~- 156 (520)
T Consensus 242 GICLGHQllalA~Gakt~KmkfGHrG~-------NhPV~~-~----~tgkv~ITSQNHGyaVd~~sl~~~~~~vt~~nln 309 (356)
T PRK12838 242 GICLGHQLIALALGAETYKLPFGHRGA-------NHPVID-L----ATGRVWMTSQNHGYVVDEDSIDEKQLSVTFFNLN 309 (356)
T ss_pred EECHHHHHHHHHHCCEEEECCCCCCCC-------CCCCEE-C----CCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC
T ss_conf 974889999997097486415566887-------826477-6----8994899726876167767689886599999089
Q ss_pred CCCEEEEEECCCCEEEEEEEEHHHCCCH-HHHHHHHHHHHHCC
Q ss_conf 8317889863500112465212221520-25779987550106
Q gi|254780414|r 157 STPFAFIADEKRKYYAVQFHPEVVHTVG-GSQLIDNFVHHVAG 198 (520)
Q Consensus 157 ~~~iaai~~~~~~iyGVQFHPEV~hT~~-G~~iL~NFl~~Ic~ 198 (520)
T Consensus 310 D~tveGi~~~~~p~fsVQfHPEa~PGP~D~~~lF~~F~~~~~~ 352 (356)
T PRK12838 310 DGSIEGLRHKKLPVLSVQFHPEAHPGPHDAEYIFDEFLEMMGE 352 (356)
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9966107988998688712889998987438899999999998