HHsearch alignment for GI: 254780414 and conserved domain: TIGR00032

>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=97.29  E-value=0.0013  Score=46.07  Aligned_cols=157  Identities=22%  Similarity=0.343  Sum_probs=108.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHC---
Q ss_conf             0366405640477999999862236-5699997389551562789999886236985799758899999-----966---
Q gi|254780414|r  224 RVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLK---  294 (520)
Q Consensus       224 kVi~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~---  294 (520)
T Consensus         1 KVvLAySGGLDTSv~l~wL~~kyG~~~Via~~~dvGQPDE~d~~~~~~kA~~~GA~~~~~iDak~eFv~dy~f~aiqanA   80 (420)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLEEKYGYEEVIAVTADVGQPDEEDIDAIEEKALKYGAEKHYTIDAKEEFVKDYLFAAIQANA   80 (420)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf             96888607025999999988652898607999756799988888899998873671025772368899999888765066


Q ss_pred             ------CCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCC
Q ss_conf             ------8988---8999988756589999999974399709986462202454202467776303443023201132032
Q gi|254780414|r  295 ------NIVD---PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDM  365 (520)
Q Consensus       295 ------gv~D---PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~  365 (520)
T Consensus        81 ~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~-----~Ga~AvaHGC----------TGKGN-DQ~RF--e~~~~~~~p~L  142 (420)
T TIGR00032        81 VYEGTGGLVYPLSTALARPLIAKKLVEVAKK-----EGAEAVAHGC----------TGKGN-DQVRF--ERSIRALNPDL  142 (420)
T ss_pred             EECCCCCEECCCCCCCHHHHHHHHHHHHHHH-----CCCEEEECCC----------CCCCC-CHHHH--HHHHHHHCCCC
T ss_conf             0317874103476611457999999999846-----6954987076----------87774-13576--58887526898


Q ss_pred             CHHHHHHH--HH-----HHHHHHHHHHHCCCHHHHCCCCC
Q ss_conf             02237898--73-----89999999981999889426888
Q gi|254780414|r  366 KLVEPLKE--LF-----KDEVRLLGKELRLPDSFVERHPC  398 (520)
Q Consensus       366 ~liEPl~~--l~-----KdEVR~lg~~Lglp~~~~~RhPF  398 (520)
T Consensus       143 kviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~p~~~~K~Y  182 (420)
T TIGR00032       143 KVIAPWRDLNLTEELGGREEEIEYAAQKGIPVPMTKEKPY  182 (420)
T ss_pred             EEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             5874734646776405948899999966888765467777