HHsearch alignment for GI: 254780414 and conserved domain: TIGR00268
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=99.25 E-value=1.9e-09 Score=87.80 Aligned_cols=224 Identities=24% Similarity=0.295 Sum_probs=152.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 99999976504440366405640477999999862236569999738-95515627899998862369857997588999
Q gi|254780414|r 211 EIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDH-GFMRKNEVENIISLFKGYPNFPLRVVDASERF 289 (520)
Q Consensus 211 ~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~-GllRknE~~~v~~~~~~~~~~~l~~vda~~~F 289 (520)
T Consensus 4 ~L~~fl~~kf~nk~~~IAySGGvDS~lla~v~~~v~g~~~lait~~sP~~sp~~el~~A~~~A~~-~g~~he~~~~d~~~ 82 (263)
T TIGR00268 4 NLRNFLKEKFKNKKVLIAYSGGVDSSLLAAVCSDVAGTEVLAITVVSPSISPRRELEDAKAIAKE-IGVKHELVKIDKMA 82 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEECCCCCC
T ss_conf 88889876764081699951746589999999875310113578762775735448999999988-08301211001236
Q ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHH
Q ss_conf 99966898-88999988756589999999974399709986462202454202467776303443023201132032022
Q gi|254780414|r 290 IRKLKNIV-DPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLV 368 (520)
Q Consensus 290 l~~L~gv~-DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~li 368 (520)
T Consensus 83 n~---~f~~N~~~RCY~CK~~~~~~L~~~a~~~-gy~~V~dGtN~dDL~~~RP--G--------------~~A~~E~~g~ 142 (263)
T TIGR00268 83 NP---NFRANVEERCYFCKKKVLSILVKLAEKR-GYDVVVDGTNADDLEDHRP--G--------------LRAVKELNGV 142 (263)
T ss_pred CC---CCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCC--H--------------HHHHHHCCCC
T ss_conf 85---0016885444154888999989999863-9957982346200023675--1--------------3567660788
Q ss_pred -HHHHHH--HHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf -378987--3899999999819998894268889831112210--00367899999999999999998646533322010
Q gi|254780414|r 369 -EPLKEL--FKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCI--GEITEERINILRESDAIYREEIHKAGIYRKIWQAF 443 (520)
Q Consensus 369 -EPl~~l--~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~--g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q~~ 443 (520)
T Consensus 143 ~SP~aef~I~K~eir~ia~~lg~~~---~DKP~-~~CL~sR~p~g~EI~~ekL~~v~eaE~~~l~~-------------- 204 (263)
T TIGR00268 143 YSPWAEFGITKKEIREIAKSLGLSF---YDKPS-EACLASRFPFGEEIDVEKLKKVDEAEEIVLRR-------------- 204 (263)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC---CCCCC-CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH--------------
T ss_conf 6872002568799999999748898---88866-21021047687510489877699999999998--------------
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 455686324215998541447999632168775587101898999987557
Q gi|254780414|r 444 TVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIR 494 (520)
Q Consensus 444 avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~~~~l~~is~~ 494 (520)
T Consensus 205 ---~g~~qvRV----R~y~nlAvi--------------E~~~~~l~kl~~~ 234 (263)
T TIGR00268 205 ---AGVKQVRV----RNYDNLAVI--------------EVAEDELSKLLNE 234 (263)
T ss_pred ---HCCCCEEE----ECCCCEEEE--------------EECHHHHHHHHHH
T ss_conf ---35660576----526765799--------------6285889999863