HHsearch alignment for GI: 254780414 and conserved domain: TIGR00342
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=98.03 E-value=6.2e-06 Score=62.65 Aligned_cols=155 Identities=23% Similarity=0.324 Sum_probs=114.1
Q ss_pred C-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH-------CCCCCEEEEEHHHHHHHH
Q ss_conf 4-44036640564047799999986223656999973895515627899998862-------369857997588999999
Q gi|254780414|r 221 G-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG-------YPNFPLRVVDASERFIRK 292 (520)
Q Consensus 221 g-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~-------~~~~~l~~vda~~~Fl~~ 292 (520)
T Consensus 184 G~~Gkvl~LlSGGiDSPVAaf~~m~R-Gc~V~~vhf~~~~~~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~-~~~ 261 (391)
T TIGR00342 184 GTQGKVLALLSGGIDSPVAAFLAMKR-GCRVVAVHFFNEPAASEKAREKVERLANLLSLNETGGSVKLYVVDFTDV-QEE 261 (391)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHH-HHH
T ss_conf 02536320411883516799999663-8779999732885524689999999999885400037999998543899-999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHH-HH
Q ss_conf 66898889999887565899999999743997099864622024542024677763034430232011320320223-78
Q gi|254780414|r 293 LKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVE-PL 371 (520)
Q Consensus 293 L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liE-Pl 371 (520)
T Consensus 262 ~~~~~~e~~~~v~~rR~M~~~A~~~ae~~-g~~A~VTG-------e~LGQV--ASQTL~---Nl~vI~~~~~~~iL~RPL 328 (391)
T TIGR00342 262 IIEIIPEKYTMVLCRRLMLKIASKVAEKE-GCLAIVTG-------ESLGQV--ASQTLE---NLRVIQAVVNTPILRRPL 328 (391)
T ss_pred HHHCCCCCCEEEEHHHHHHHHHHHHHHHC-CCCEEEEC-------CCCCCH--HHHHHH---HHHHHHHCCCCCEEECCC
T ss_conf 98418998788740667999999888860-99489976-------634203--777888---999997237874240775
Q ss_pred HHHHHHHHHHHHHHHCCCH
Q ss_conf 9873899999999819998
Q gi|254780414|r 372 KELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 372 ~~l~KdEVR~lg~~Lglp~ 390 (520)
T Consensus 329 Ig~DK~~Ii~~Ak~IgTye 347 (391)
T TIGR00342 329 IGMDKEEIIELAKEIGTYE 347 (391)
T ss_pred CCCCHHHHHHHHHHCCCEE
T ss_conf 5479789999974139621