HHsearch alignment for GI: 254780414 and conserved domain: TIGR00342

>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=98.03  E-value=6.2e-06  Score=62.65  Aligned_cols=155  Identities=23%  Similarity=0.324  Sum_probs=114.1

Q ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH-------CCCCCEEEEEHHHHHHHH
Q ss_conf             4-44036640564047799999986223656999973895515627899998862-------369857997588999999
Q gi|254780414|r  221 G-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG-------YPNFPLRVVDASERFIRK  292 (520)
Q Consensus       221 g-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~-------~~~~~l~~vda~~~Fl~~  292 (520)
T Consensus       184 G~~Gkvl~LlSGGiDSPVAaf~~m~R-Gc~V~~vhf~~~~~~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~-~~~  261 (391)
T TIGR00342       184 GTQGKVLALLSGGIDSPVAAFLAMKR-GCRVVAVHFFNEPAASEKAREKVERLANLLSLNETGGSVKLYVVDFTDV-QEE  261 (391)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHH-HHH
T ss_conf             02536320411883516799999663-8779999732885524689999999999885400037999998543899-999


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHH-HH
Q ss_conf             66898889999887565899999999743997099864622024542024677763034430232011320320223-78
Q gi|254780414|r  293 LKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVE-PL  371 (520)
Q Consensus       293 L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liE-Pl  371 (520)
T Consensus       262 ~~~~~~e~~~~v~~rR~M~~~A~~~ae~~-g~~A~VTG-------e~LGQV--ASQTL~---Nl~vI~~~~~~~iL~RPL  328 (391)
T TIGR00342       262 IIEIIPEKYTMVLCRRLMLKIASKVAEKE-GCLAIVTG-------ESLGQV--ASQTLE---NLRVIQAVVNTPILRRPL  328 (391)
T ss_pred             HHHCCCCCCEEEEHHHHHHHHHHHHHHHC-CCCEEEEC-------CCCCCH--HHHHHH---HHHHHHHCCCCCEEECCC
T ss_conf             98418998788740667999999888860-99489976-------634203--777888---999997237874240775


Q ss_pred             HHHHHHHHHHHHHHHCCCH
Q ss_conf             9873899999999819998
Q gi|254780414|r  372 KELFKDEVRLLGKELRLPD  390 (520)
Q Consensus       372 ~~l~KdEVR~lg~~Lglp~  390 (520)
T Consensus       329 Ig~DK~~Ii~~Ak~IgTye  347 (391)
T TIGR00342       329 IGMDKEEIIELAKEIGTYE  347 (391)
T ss_pred             CCCCHHHHHHHHHHCCCEE
T ss_conf             5479789999974139621