HHsearch alignment for GI: 254780414 and conserved domain: TIGR03183
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=90.74 E-value=0.3 Score=29.14 Aligned_cols=217 Identities=20% Similarity=0.270 Sum_probs=111.4
Q ss_pred HHHHHHHHC-CC-CEEEEECCCCHHHHHHHHHHHHCCC--------CEEEEEECCCCCCC------CCHHHHHHHHHHCC
Q ss_conf 999976504-44-0366405640477999999862236--------56999973895515------62789999886236
Q gi|254780414|r 213 VSRIKEQVG-NE-RVICAVSGGVDSTVAAFLIYEAIGI--------NLTCVLVDHGFMRK------NEVENIISLFKGYP 276 (520)
Q Consensus 213 i~~Ir~~vg-~~-kVi~~lSGGVDStV~A~Ll~kAig~--------~l~~vfVD~GllRk------nE~~~v~~~~~~~~ 276 (520)
T Consensus 2 ~~ei~~~Y~~d~~PWvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnP~V~~~v~~~L~~i~~~a~~~ 81 (447)
T TIGR03183 2 IEEIQELYCADDIPWVIGYSGGKDSTAVLQLVWNALSELPPEQRTKKIHVISTDTLVENPIVAAWVNVSLERMQEAAQKQ 81 (447)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38999998537998799758773999999999999984788757688899979987557799999999999999999974
Q ss_pred CCCEEEE----EHHHHHHHHHCCCCC--HHHH-------HHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC
Q ss_conf 9857997----588999999668988--8999-------9887-565899999999743997099864622024542024
Q gi|254780414|r 277 NFPLRVV----DASERFIRKLKNIVD--PETK-------RKVI-GQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF 342 (520)
Q Consensus 277 ~~~l~~v----da~~~Fl~~L~gv~D--PE~K-------RkiI-G~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~ 342 (520)
T Consensus 82 ~LPi~~~~~~P~~~dtFWvnlIGrGYPaP~~~FRWCTdrLKI~P~~~fi~~---~v~~~-ge~ilvLGtR~~---ES~~R 154 (447)
T TIGR03183 82 GLPIEPHRLTPAIEDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRD---KVAAN-GEVILVLGTRKN---ESQAR 154 (447)
T ss_pred CCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHH---HHHCC-CCEEEEEECCHH---HHHHH
T ss_conf 998236893378544300010346307999876525576636828999998---65214-968999956527---77999
Q ss_pred CCCCCCEEEEEECCCCHHHHH----C---CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 677763034430232011320----3---202237898738999999998199988942688898311122100036789
Q gi|254780414|r 343 FGGPSSIIKSHHNVGGLPEHM----D---MKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEER 415 (520)
Q Consensus 343 ~~~~~~~IKsHHNvgglp~~~----~---~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~ 415 (520)
T Consensus 155 ----a~~i~k~e~-~~~~~~ls~h~~l~n~~vy~PI~dws~ddVW~yL~~------------~~~P------wg~~n~~L 211 (447)
T TIGR03183 155 ----AAVMEKHEG-GSTRDRLSRNSSLPNSWVYTPIEDWSNDDVWMYLLQ------------NPNP------WGYDNHDL 211 (447)
T ss_pred ----HHHHHHHHC-CCCHHHCCCCCCCCCCEEECCHHHCCHHHHHHHHCC------------CCCC------CCCCHHHH
T ss_conf ----999998644-670421276888888379730674764089998633------------8998------89985999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH-HHEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99999999999999986465333220-1045568632421599854144799963216877558
Q gi|254780414|r 416 INILRESDAIYREEIHKAGIYRKIWQ-AFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTA 478 (520)
Q Consensus 416 ~~i~r~ad~i~~~~l~~~~ly~~~~q-~~avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta 478 (520)
T Consensus 212 ~~-----------------lY~~At~~gECplv~d~stpSCG~SRFGCWvCTv--V~~DKSm~~ 256 (447)
T TIGR03183 212 FK-----------------LYQGATADGECPLVVDKSTPSCGDSRFGCWVCTV--VSEDKSMNA 256 (447)
T ss_pred HH-----------------HHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEE--ECCHHHHHH
T ss_conf 99-----------------9740678997763547988886677667367777--632273999