Query gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 520
No_of_seqs 307 out of 3937
Neff 5.0
Searched_HMMs 39220
Date Sun May 29 19:18:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780414.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00074 guaA GMP synthase; Re 100.0 0 0 1750.1 51.3 512 5-520 2-513 (513)
2 KOG1622 consensus 100.0 0 0 1348.7 33.7 515 4-520 13-552 (552)
3 TIGR00884 guaA_Cterm GMP synth 100.0 0 0 1271.2 24.9 314 207-520 1-319 (319)
4 COG0519 GuaA GMP synthase, PP- 100.0 0 0 1110.1 30.9 315 202-520 1-315 (315)
5 PRK00919 GMP synthase subunit 100.0 0 0 1079.5 30.2 305 204-520 2-306 (306)
6 cd01997 GMP_synthase_C The C-t 100.0 0 0 1060.1 29.7 295 224-519 1-295 (295)
7 TIGR00888 guaA_Nterm GMP synth 100.0 0 0 622.9 13.3 191 10-200 1-195 (195)
8 PRK07765 para-aminobenzoate sy 100.0 0 0 436.9 21.4 211 9-223 2-219 (221)
9 COG0518 GuaA GMP synthase - Gl 100.0 0 0 419.5 16.2 191 7-201 1-198 (198)
10 CHL00101 trpG anthranilate syn 100.0 0 0 405.3 19.1 186 9-198 1-190 (190)
11 PRK05670 anthranilate synthase 100.0 0 0 386.0 18.9 188 9-200 1-191 (192)
12 PRK08857 para-aminobenzoate sy 100.0 0 0 385.3 18.6 183 9-194 1-191 (192)
13 PRK06895 para-aminobenzoate sy 100.0 0 0 384.5 18.3 182 7-196 2-189 (191)
14 cd01743 GATase1_Anthranilate_S 100.0 0 0 378.5 17.9 181 10-193 1-184 (184)
15 PRK07649 para-aminobenzoate/an 100.0 0 0 375.8 19.1 190 9-201 1-193 (195)
16 PRK00758 GMP synthase subunit 100.0 0 0 376.6 17.7 182 9-198 1-182 (184)
17 PRK08007 para-aminobenzoate sy 100.0 0 0 368.7 18.6 183 9-194 1-186 (187)
18 cd01742 GATase1_GMP_Synthase T 100.0 0 0 367.3 18.9 181 10-193 1-181 (181)
19 PRK06774 para-aminobenzoate sy 100.0 0 0 358.7 17.9 184 9-195 1-191 (191)
20 cd01744 GATase1_CPSase Small c 100.0 0 0 361.9 14.7 173 10-193 1-178 (178)
21 PRK09522 bifunctional anthrani 100.0 6.4E-43 0 326.9 20.3 352 8-421 2-403 (531)
22 pfam00117 GATase Glutamine ami 100.0 1.1E-43 0 332.4 15.1 182 11-196 1-187 (187)
23 PRK05637 anthranilate synthase 100.0 7.7E-40 2E-44 304.9 18.2 186 8-196 2-205 (208)
24 pfam00958 GMP_synt_C GMP synth 100.0 7.5E-41 1.4E-45 312.2 8.2 93 427-519 1-93 (93)
25 cd01990 Alpha_ANH_like_I This 100.0 1.5E-37 3.9E-42 288.5 17.0 180 225-428 1-184 (202)
26 PRK13143 hisH imidazole glycer 100.0 2.1E-37 5.2E-42 287.6 14.9 179 8-198 2-201 (201)
27 PRK13181 hisH imidazole glycer 100.0 5.4E-37 1.4E-41 284.6 11.3 175 9-196 1-199 (199)
28 COG0512 PabA Anthranilate/para 100.0 3.1E-34 8E-39 264.9 17.4 181 8-193 2-188 (191)
29 PRK13566 anthranilate synthase 100.0 7E-34 1.8E-38 262.4 18.7 191 4-197 520-716 (724)
30 cd01748 GATase1_IGP_Synthase T 100.0 6.5E-35 1.6E-39 269.8 11.6 172 10-193 1-198 (198)
31 TIGR01368 CPSaseIIsmall carbam 100.0 2.7E-33 7E-38 258.1 12.1 172 8-196 197-381 (383)
32 PRK13175 consensus 100.0 3.8E-32 9.6E-37 250.0 15.7 178 8-197 2-204 (206)
33 PRK09065 glutamine amidotransf 100.0 3.3E-32 8.4E-37 250.4 14.8 168 7-181 3-192 (238)
34 PRK12564 carbamoyl phosphate s 100.0 2.4E-31 6E-36 244.3 14.1 176 5-194 169-352 (355)
35 cd01741 GATase1_1 Subgroup of 100.0 3.9E-31 9.9E-36 242.7 14.5 174 9-193 1-188 (188)
36 PRK13141 hisH imidazole glycer 100.0 1.1E-30 2.8E-35 239.5 16.0 177 8-197 1-203 (204)
37 CHL00197 carA carbamoyl-phosph 100.0 9.6E-31 2.4E-35 239.9 12.7 174 7-197 194-378 (383)
38 PRK07053 glutamine amidotransf 100.0 3.8E-30 9.7E-35 235.7 15.0 177 7-193 2-190 (235)
39 PRK05665 amidotransferase; Pro 100.0 1.8E-30 4.5E-35 238.1 13.2 209 9-246 4-233 (240)
40 PRK12838 carbamoyl phosphate s 100.0 2.6E-30 6.7E-35 236.8 13.9 179 5-198 165-352 (356)
41 PRK07567 glutamine amidotransf 100.0 3.6E-29 9.1E-34 228.7 11.4 160 47-217 48-223 (242)
42 PRK06490 glutamine amidotransf 100.0 3.4E-28 8.6E-33 221.8 15.1 176 5-194 9-195 (243)
43 PRK08250 glutamine amidotransf 100.0 2E-28 5.1E-33 223.4 13.0 174 9-193 2-191 (235)
44 COG0505 CarA Carbamoylphosphat 100.0 5.7E-28 1.4E-32 220.1 14.2 181 5-196 177-362 (368)
45 TIGR00566 trpG_papA glutamine 100.0 2.5E-28 6.5E-33 222.6 11.2 186 9-194 1-211 (212)
46 TIGR01815 TrpE-clade3 anthrani 99.9 8.3E-27 2.1E-31 211.8 15.3 196 3-201 520-722 (726)
47 PRK13180 consensus 99.9 6.9E-27 1.8E-31 212.4 12.9 176 8-194 2-207 (209)
48 PRK13146 hisH imidazole glycer 99.9 9.3E-27 2.4E-31 211.5 12.5 177 8-193 2-204 (208)
49 PRK13152 hisH imidazole glycer 99.9 2.2E-26 5.5E-31 208.8 12.3 171 10-193 2-199 (201)
50 PRK13153 consensus 99.9 8.8E-26 2.2E-30 204.5 12.7 171 10-193 2-201 (203)
51 PRK13176 consensus 99.9 6.9E-26 1.8E-30 205.2 11.5 179 9-193 2-212 (216)
52 PRK13178 consensus 99.9 2.7E-25 6.9E-30 201.0 13.5 175 10-198 2-207 (213)
53 PRK13174 consensus 99.9 5.7E-25 1.4E-29 198.7 14.7 176 8-193 2-206 (212)
54 KOG0026 consensus 99.9 2.1E-24 5.5E-29 194.6 15.0 194 4-205 15-220 (223)
55 PRK13177 consensus 99.9 3.1E-24 8E-29 193.4 14.8 173 7-193 2-203 (207)
56 PRK13171 consensus 99.9 6E-24 1.5E-28 191.4 13.4 175 8-196 2-197 (200)
57 KOG0370 consensus 99.9 2.7E-24 6.9E-29 193.9 11.5 231 5-257 170-419 (1435)
58 PRK13170 hisH imidazole glycer 99.9 4.2E-24 1.1E-28 192.4 11.5 169 9-193 2-194 (196)
59 PRK11366 puuD gamma-glutamyl-g 99.9 1.3E-22 3.4E-27 181.8 18.4 196 1-198 1-245 (254)
60 pfam07722 Peptidase_C26 Peptid 99.9 5.4E-23 1.4E-27 184.6 13.7 153 24-178 30-219 (219)
61 PRK13148 consensus 99.9 2.7E-22 7E-27 179.5 14.3 180 8-205 2-225 (225)
62 COG0118 HisH Glutamine amidotr 99.9 9.8E-22 2.5E-26 175.6 15.1 175 8-193 2-200 (204)
63 COG2071 Predicted glutamine am 99.9 1.2E-21 3.1E-26 174.9 15.0 172 24-199 32-240 (243)
64 cd01745 GATase1_2 Subgroup of 99.9 1.4E-21 3.7E-26 174.4 14.0 145 21-193 22-189 (189)
65 PRK13179 consensus 99.9 7.7E-21 2E-25 169.2 15.0 174 10-196 2-206 (207)
66 PRK13173 consensus 99.9 1.1E-20 2.8E-25 168.0 15.8 173 8-193 2-207 (211)
67 KOG1224 consensus 99.9 3.6E-21 9.2E-26 171.5 12.8 195 2-197 9-217 (767)
68 CHL00188 hisH imidazole glycer 99.9 3.8E-21 9.7E-26 171.3 12.8 175 8-195 2-209 (210)
69 TIGR01855 IMP_synth_hisH imida 99.9 2.1E-21 5.3E-26 173.2 11.4 173 10-193 1-209 (211)
70 PRK13147 consensus 99.9 1.1E-20 2.8E-25 168.1 15.1 175 9-193 2-207 (211)
71 TIGR01823 PabB-fungal para-ami 99.9 8.1E-21 2.1E-25 169.0 13.0 193 6-199 4-244 (851)
72 PRK13172 consensus 99.9 2E-20 5.2E-25 166.1 14.7 175 8-193 2-211 (213)
73 pfam02540 NAD_synthase NAD syn 99.9 4.2E-20 1.1E-24 163.9 14.9 173 209-400 2-180 (243)
74 PRK13151 consensus 99.8 2E-20 5.2E-25 166.1 12.2 172 9-196 2-194 (195)
75 PRK13144 consensus 99.8 1.5E-20 3.7E-25 167.2 11.2 166 9-194 2-186 (190)
76 PRK13527 glutamine amidotransf 99.8 1.1E-18 2.9E-23 153.7 13.4 173 9-197 2-194 (196)
77 PRK13525 glutamine amidotransf 99.8 8.7E-19 2.2E-23 154.5 11.4 170 8-197 2-187 (191)
78 PRK13142 hisH imidazole glycer 99.8 5.1E-18 1.3E-22 149.0 11.0 166 9-194 1-186 (192)
79 KOG3179 consensus 99.8 4.6E-18 1.2E-22 149.3 9.9 159 15-180 23-195 (245)
80 pfam01174 SNO SNO glutamine am 99.7 2.7E-17 6.8E-22 143.8 9.4 157 21-193 9-183 (188)
81 cd00553 NAD_synthase NAD+ synt 99.7 8.3E-16 2.1E-20 133.2 14.1 187 205-416 3-200 (248)
82 cd01749 GATase1_PB Glutamine A 99.7 3.2E-16 8E-21 136.2 10.8 164 12-193 3-183 (183)
83 PRK00143 trmU tRNA (5-methylam 99.7 1.5E-15 3.8E-20 131.3 11.2 162 221-390 3-187 (355)
84 PRK00876 nadE NAD synthetase; 99.7 3.8E-15 9.6E-20 128.5 12.8 177 203-400 10-248 (325)
85 cd01998 tRNA_Me_trans tRNA met 99.6 1.2E-15 3.2E-20 132.0 8.6 158 224-389 1-182 (349)
86 PRK13980 NAD synthetase; Provi 99.6 1.9E-14 4.8E-19 123.5 14.0 175 204-400 7-189 (264)
87 pfam03054 tRNA_Me_trans tRNA m 99.6 2.4E-15 6.2E-20 129.8 8.2 160 224-390 2-185 (354)
88 PRK00768 nadE NAD synthetase; 99.6 2.7E-14 6.9E-19 122.4 13.1 187 186-400 6-213 (274)
89 cd01747 GATase1_Glutamyl_Hydro 99.5 4.1E-14 1E-18 121.1 8.3 186 15-200 16-249 (273)
90 COG0482 TrmU Predicted tRNA(5- 99.5 3.4E-13 8.6E-18 114.6 12.5 161 222-391 3-186 (356)
91 COG1606 ATP-utilizing enzymes 99.5 5.6E-12 1.4E-16 105.8 16.4 188 210-428 4-202 (269)
92 TIGR00420 trmU tRNA (5-methyla 99.5 4.3E-13 1.1E-17 113.8 10.1 162 223-391 1-204 (394)
93 PTZ00323 NAD+ synthase; Provis 99.4 1.2E-11 3.2E-16 103.4 15.6 183 186-400 12-222 (294)
94 COG0171 NadE NAD synthase [Coe 99.4 2.8E-11 7E-16 100.9 14.2 174 205-400 5-196 (268)
95 PRK06186 hypothetical protein; 99.4 7.9E-13 2E-17 111.9 5.9 145 48-197 51-226 (229)
96 cd01746 GATase1_CTP_Synthase T 99.4 6E-13 1.5E-17 112.8 4.9 141 49-193 54-235 (235)
97 KOG0623 consensus 99.3 1.2E-11 3E-16 103.5 9.8 172 8-195 2-207 (541)
98 TIGR00337 PyrG CTP synthase; I 99.3 3.6E-12 9.1E-17 107.2 7.0 140 50-193 373-569 (571)
99 KOG2805 consensus 99.3 1.7E-11 4.3E-16 102.4 10.2 164 222-395 5-196 (377)
100 PRK05380 pyrG CTP synthetase; 99.3 4.6E-12 1.2E-16 106.4 5.5 144 49-195 342-526 (534)
101 cd01712 ThiI ThiI is required 99.3 1.7E-11 4.3E-16 102.4 7.8 153 224-391 1-159 (177)
102 COG0504 PyrG CTP synthase (UTP 99.3 1.4E-11 3.6E-16 103.0 7.0 141 51-195 344-525 (533)
103 TIGR00268 TIGR00268 conserved 99.2 1.9E-09 4.8E-14 87.8 17.2 224 211-494 4-234 (263)
104 pfam02568 ThiI Thiamine biosyn 99.2 1.5E-10 3.8E-15 95.7 11.5 156 222-393 3-166 (197)
105 COG0037 MesJ tRNA(Ile)-lysidin 99.2 5E-10 1.3E-14 91.9 13.9 158 222-390 21-188 (298)
106 pfam01171 ATP_bind_3 PP-loop f 99.2 2.3E-10 6E-15 94.3 10.9 152 224-390 1-163 (182)
107 cd01993 Alpha_ANH_like_II This 99.2 3.8E-10 9.8E-15 92.7 10.0 155 224-390 1-174 (185)
108 PRK01175 phosphoribosylformylg 99.2 1.5E-09 3.8E-14 88.5 12.9 189 6-196 2-252 (255)
109 PRK03619 phosphoribosylformylg 99.1 2.4E-09 6.2E-14 87.0 13.3 180 9-193 2-217 (223)
110 cd01992 PP-ATPase N-terminal d 99.1 6.1E-10 1.5E-14 91.3 8.3 150 224-389 1-162 (185)
111 cd01740 GATase1_FGAR_AT Type 1 99.0 1.3E-08 3.2E-13 81.9 13.8 180 10-191 1-236 (238)
112 COG0047 PurL Phosphoribosylfor 99.0 4.4E-08 1.1E-12 78.0 14.4 184 7-193 2-227 (231)
113 PRK13981 NAD synthetase; Provi 99.0 1.7E-08 4.3E-13 81.0 11.5 161 218-400 277-458 (543)
114 TIGR00552 nadE NAD+ synthetase 99.0 2.7E-08 6.9E-13 79.5 12.4 170 212-398 16-203 (286)
115 PRK08349 hypothetical protein; 98.9 7.9E-09 2E-13 83.3 7.9 178 224-421 2-187 (198)
116 PRK10660 tilS tRNA(Ile)-lysidi 98.9 6.7E-08 1.7E-12 76.7 11.8 153 220-390 11-175 (433)
117 TIGR01737 FGAM_synth_I phospho 98.8 3.3E-08 8.4E-13 78.9 9.6 182 9-193 2-261 (264)
118 PRK13794 hypothetical protein; 98.8 2.7E-08 6.9E-13 79.5 8.7 178 203-399 224-411 (473)
119 PRK13795 hypothetical protein; 98.8 4.7E-08 1.2E-12 77.8 9.2 99 203-303 224-324 (630)
120 KOG2387 consensus 98.7 8.8E-09 2.3E-13 83.0 4.3 133 50-182 363-532 (585)
121 PRK01565 thiamine biosynthesis 98.6 5.2E-07 1.3E-11 70.3 10.1 156 220-391 173-335 (399)
122 TIGR03573 WbuX N-acetyl sugar 98.6 3.5E-06 8.9E-11 64.4 14.1 127 200-331 35-168 (343)
123 PRK08557 hypothetical protein; 98.6 4.5E-07 1.2E-11 70.8 9.4 185 204-402 160-352 (420)
124 PRK13526 glutamine amidotransf 98.6 7.7E-07 2E-11 69.1 9.8 165 8-193 3-177 (179)
125 TIGR02432 lysidine_TilS_N tRNA 98.6 1.3E-06 3.4E-11 67.4 10.7 156 224-390 1-182 (204)
126 cd01986 Alpha_ANH_like Adenine 98.6 1.4E-07 3.5E-12 74.5 5.7 102 225-372 1-103 (103)
127 PRK01269 thiamine biosynthesis 98.5 7.5E-07 1.9E-11 69.2 9.1 158 222-397 177-341 (483)
128 cd01995 ExsB ExsB is a transcr 98.5 4.7E-07 1.2E-11 70.7 7.9 144 224-399 1-149 (169)
129 COG0301 ThiI Thiamine biosynth 98.5 6.3E-06 1.6E-10 62.6 13.1 167 220-403 172-345 (383)
130 pfam04204 HTS Homoserine O-suc 98.5 3.9E-06 9.8E-11 64.1 11.4 160 42-208 90-262 (298)
131 pfam06508 ExsB ExsB. This fami 98.5 8.7E-07 2.2E-11 68.7 7.9 107 224-336 1-131 (137)
132 PRK05368 homoserine O-succinyl 98.4 4.6E-06 1.2E-10 63.6 10.2 149 42-198 91-253 (302)
133 PRK08576 hypothetical protein; 98.4 2.7E-06 7E-11 65.2 8.8 177 206-398 220-396 (439)
134 PRK11106 queuosine biosynthesi 98.3 1.3E-06 3.2E-11 67.6 5.4 157 223-396 2-188 (231)
135 cd01713 PAPS_reductase This do 98.3 2.3E-05 5.9E-10 58.6 11.7 164 224-400 1-171 (173)
136 pfam01507 PAPS_reduct Phosphoa 98.3 1.7E-05 4.4E-10 59.5 11.0 165 224-402 1-167 (174)
137 COG0311 PDX2 Predicted glutami 98.3 5E-05 1.3E-09 56.2 13.2 169 9-193 2-187 (194)
138 PRK00509 argininosuccinate syn 98.3 1.9E-05 4.9E-10 59.2 10.7 103 222-331 2-117 (398)
139 PRK10696 C32 tRNA thiolase; Pr 98.2 4.4E-05 1.1E-09 56.6 11.7 166 209-389 26-206 (311)
140 KOG1559 consensus 98.2 3.3E-06 8.3E-11 64.6 5.7 187 2-195 60-299 (340)
141 cd01996 Alpha_ANH_like_III Thi 98.2 9E-06 2.3E-10 61.5 8.0 103 225-331 4-110 (154)
142 PRK01077 cobyrinic acid a,c-di 98.1 1E-04 2.5E-09 54.0 12.2 18 78-95 322-339 (451)
143 PRK04527 argininosuccinate syn 98.1 8.7E-05 2.2E-09 54.4 11.9 157 221-401 2-170 (397)
144 PRK13820 argininosuccinate syn 98.1 2E-05 5E-10 59.1 8.4 148 222-391 3-165 (395)
145 TIGR00342 TIGR00342 thiamine b 98.0 6.2E-06 1.6E-10 62.6 4.4 155 221-390 184-347 (391)
146 COG0603 Predicted PP-loop supe 98.0 1.7E-05 4.4E-10 59.4 6.7 169 222-408 2-199 (222)
147 pfam00733 Asn_synthase Asparag 98.0 5.9E-05 1.5E-09 55.7 9.1 84 210-294 4-89 (195)
148 pfam00764 Arginosuc_synth Argi 97.9 0.00015 3.9E-09 52.7 9.9 98 226-330 1-111 (389)
149 PRK05297 phosphoribosylformylg 97.9 0.0002 5.2E-09 51.8 10.4 10 52-61 433-442 (1294)
150 PRK05370 argininosuccinate syn 97.9 8.5E-05 2.2E-09 54.5 8.3 148 222-389 11-182 (447)
151 TIGR03108 eps_aminotran_1 exos 97.8 0.0004 1E-08 49.7 10.7 124 140-287 198-324 (628)
152 COG0175 CysH 3'-phosphoadenosi 97.8 0.00014 3.6E-09 52.9 8.3 172 212-402 30-208 (261)
153 cd01750 GATase1_CobQ Type 1 gl 97.8 0.00016 4.1E-09 52.5 7.8 81 10-96 1-89 (194)
154 cd01991 Asn_Synthase_B_C The C 97.8 0.00024 6.2E-09 51.3 8.6 74 219-293 12-86 (269)
155 PRK02628 nadE NAD synthetase; 97.7 0.00023 6E-09 51.4 8.0 162 219-399 359-546 (678)
156 PRK08384 thiamine biosynthesis 97.7 0.00033 8.5E-09 50.3 8.1 131 220-388 176-308 (310)
157 cd01999 Argininosuccinate_Synt 97.6 0.0014 3.5E-08 45.8 11.0 101 225-331 1-114 (385)
158 pfam07685 GATase_3 CobB/CobQ-l 97.6 0.00018 4.7E-09 52.1 6.5 48 49-96 6-59 (158)
159 cd01984 AANH_like Adenine nucl 97.6 0.00019 4.8E-09 52.0 6.4 84 225-370 1-86 (86)
160 cd03130 GATase1_CobB Type 1 gl 97.6 0.0013 3.2E-08 46.1 10.3 162 18-193 12-198 (198)
161 TIGR03104 trio_amidotrans aspa 97.5 0.0014 3.5E-08 45.9 9.2 90 209-299 246-344 (589)
162 PRK06278 cobyrinic acid a,c-di 97.5 0.0025 6.3E-08 44.1 10.3 194 14-238 18-259 (482)
163 COG0137 ArgG Argininosuccinate 97.4 0.0032 8.1E-08 43.3 10.7 154 221-393 3-171 (403)
164 TIGR01001 metA homoserine O-su 97.4 0.0008 2E-08 47.5 7.5 146 42-196 91-254 (305)
165 cd03131 GATase1_HTS Type 1 glu 97.4 0.00076 1.9E-08 47.7 7.4 86 42-127 54-147 (175)
166 TIGR00032 argG argininosuccina 97.3 0.0013 3.3E-08 46.1 7.3 157 224-398 1-182 (420)
167 COG1365 Predicted ATPase (PP-l 97.3 0.0019 4.9E-08 44.8 7.9 151 217-398 55-212 (255)
168 cd01653 GATase1 Type 1 glutami 97.2 0.00029 7.5E-09 50.7 3.5 72 21-92 15-92 (115)
169 COG1492 CobQ Cobyric acid synt 97.2 0.0073 1.9E-07 40.7 10.3 193 9-220 253-471 (486)
170 COG0367 AsnB Asparagine syntha 97.1 0.0054 1.4E-07 41.6 9.1 108 220-331 228-342 (542)
171 PRK09431 asnB asparagine synth 97.1 0.0056 1.4E-07 41.5 8.8 101 206-309 210-331 (555)
172 PRK02090 phosphoadenosine phos 97.1 0.029 7.3E-07 36.5 12.3 175 201-402 25-207 (243)
173 PRK00784 cobyric acid synthase 97.1 0.01 2.6E-07 39.7 9.9 81 9-96 255-344 (492)
174 TIGR00313 cobQ cobyric acid sy 97.0 0.00025 6.4E-09 51.1 1.5 82 8-96 249-339 (502)
175 cd03128 GAT_1 Type 1 glutamine 97.0 0.0013 3.2E-08 46.1 4.9 72 21-92 15-92 (92)
176 TIGR01382 PfpI intracellular p 97.0 0.00012 3E-09 53.5 -0.7 83 11-104 45-131 (189)
177 TIGR01536 asn_synth_AEB aspara 96.9 0.0098 2.5E-07 39.8 8.6 97 221-321 310-430 (646)
178 COG1897 MetA Homoserine trans- 96.8 0.0059 1.5E-07 41.4 6.9 178 5-187 33-246 (307)
179 PTZ00077 asparagine synthetase 96.8 0.018 4.6E-07 37.9 9.3 36 212-247 226-262 (610)
180 KOG3210 consensus 96.5 0.01 2.5E-07 39.7 6.6 87 9-98 13-110 (226)
181 TIGR01735 FGAM_synt phosphorib 96.5 0.044 1.1E-06 35.1 9.8 189 3-210 1123-1382(1401)
182 PRK12563 sulfate adenylyltrans 96.4 0.02 5E-07 37.6 7.6 194 206-436 20-219 (312)
183 TIGR01857 FGAM-synthase phosph 96.4 0.038 9.6E-07 35.6 8.9 179 4-191 1013-1262(1279)
184 PRK05253 sulfate adenylyltrans 96.3 0.026 6.7E-07 36.7 7.6 141 206-358 9-155 (300)
185 TIGR00364 TIGR00364 exsB prote 96.3 0.0077 2E-07 40.5 4.8 160 225-394 1-201 (227)
186 KOG0573 consensus 96.1 0.013 3.3E-07 38.9 5.3 72 185-259 200-287 (520)
187 KOG1907 consensus 95.7 0.035 8.9E-07 35.8 5.9 31 377-408 956-986 (1320)
188 COG3442 Predicted glutamine am 95.6 0.06 1.5E-06 34.1 7.0 189 23-224 26-246 (250)
189 cd03135 GATase1_DJ-1 Type 1 gl 95.4 0.011 2.8E-07 39.4 2.4 59 37-95 47-109 (163)
190 COG2102 Predicted ATPases of P 94.7 0.29 7.4E-06 29.2 8.2 114 224-372 2-120 (223)
191 TIGR02039 CysD sulfate adenyly 94.6 0.32 8.1E-06 29.0 8.1 260 207-506 3-278 (295)
192 PRK06850 hypothetical protein; 94.2 0.084 2.1E-06 33.1 4.5 225 205-478 2-264 (488)
193 cd01994 Alpha_ANH_like_IV This 94.0 0.59 1.5E-05 27.1 11.0 61 224-285 1-66 (194)
194 PRK13896 cobyrinic acid a,c-di 93.9 0.62 1.6E-05 26.9 11.5 22 443-466 334-356 (432)
195 KOG2840 consensus 93.8 0.2 5.2E-06 30.4 5.9 98 217-320 46-156 (347)
196 cd03169 GATase1_PfpI_1 Type 1 93.5 0.052 1.3E-06 34.6 2.4 57 39-95 65-124 (180)
197 pfam01965 DJ-1_PfpI DJ-1/PfpI 93.4 0.052 1.3E-06 34.6 2.2 60 36-95 20-83 (141)
198 cd03140 GATase1_PfpI_3 Type 1 93.4 0.11 2.9E-06 32.1 3.9 57 38-95 48-107 (170)
199 TIGR00649 MG423 conserved hypo 92.6 0.26 6.6E-06 29.6 4.8 86 5-99 20-117 (593)
200 cd03134 GATase1_PfpI_like A ty 92.3 0.088 2.2E-06 33.0 2.1 59 37-95 49-110 (165)
201 cd03132 GATase1_catalase Type 92.2 0.28 7.2E-06 29.4 4.6 88 9-96 3-112 (142)
202 COG2117 Predicted subunit of t 91.9 0.23 5.9E-06 30.0 3.9 146 224-386 2-148 (198)
203 pfam01902 ATP_bind_4 ATP-bindi 91.3 1.3 3.4E-05 24.5 7.3 114 224-372 2-119 (219)
204 KOG1706 consensus 91.2 0.73 1.9E-05 26.4 5.9 90 222-317 5-110 (412)
205 TIGR03183 DNA_S_dndC putative 90.7 0.3 7.7E-06 29.1 3.5 217 213-478 2-256 (447)
206 COG0693 ThiJ Putative intracel 90.5 0.21 5.3E-06 30.3 2.6 56 42-97 58-117 (188)
207 cd03141 GATase1_Hsp31_like Typ 90.4 0.21 5.4E-06 30.2 2.5 57 39-95 79-139 (221)
208 COG3969 Predicted phosphoadeno 89.1 1.5 3.8E-05 24.2 6.0 42 203-244 7-49 (407)
209 KOG0571 consensus 88.5 0.69 1.8E-05 26.6 4.0 111 212-331 214-341 (543)
210 TIGR01369 CPSaseII_lrg carbamo 87.1 1 2.7E-05 25.3 4.2 73 7-87 573-681 (1089)
211 PRK11574 hypothetical protein; 86.9 0.49 1.3E-05 27.6 2.4 57 38-94 54-115 (196)
212 KOG2303 consensus 86.5 0.43 1.1E-05 28.0 2.0 29 215-244 343-371 (706)
213 COG4090 Uncharacterized protei 85.5 1.5 3.9E-05 24.1 4.4 70 18-87 40-124 (154)
214 PRK07334 threonine dehydratase 85.2 3.2 8.2E-05 21.8 6.5 90 217-307 287-387 (399)
215 COG1797 CobB Cobyrinic acid a, 82.7 4 0.0001 21.1 8.0 174 8-197 246-450 (451)
216 pfam08497 Radical_SAM_N Radica 80.9 3 7.6E-05 22.0 4.3 98 179-290 28-141 (298)
217 cd03137 GATase1_AraC_1 AraC tr 80.8 2.1 5.5E-05 23.0 3.6 55 39-95 55-112 (187)
218 cd03139 GATase1_PfpI_2 Type 1 80.7 3.2 8.2E-05 21.8 4.5 57 37-95 51-110 (183)
219 TIGR01184 ntrCD nitrate ABC tr 80.0 4.2 0.00011 21.0 4.8 55 7-63 132-195 (230)
220 KOG2764 consensus 79.1 2.3 5.8E-05 22.9 3.3 62 35-98 53-118 (247)
221 cd03147 GATase1_Ydr533c_like T 79.0 1.2 3.1E-05 24.8 1.8 57 39-95 83-143 (231)
222 cd00958 DhnA Class I fructose- 77.8 2.3 5.9E-05 22.8 3.0 10 249-258 91-100 (235)
223 PRK08198 threonine dehydratase 76.1 6.4 0.00016 19.7 6.9 90 217-308 293-394 (406)
224 cd06289 PBP1_MalI_like Ligand- 75.7 6.5 0.00017 19.6 6.8 72 10-86 4-86 (268)
225 PRK05452 anaerobic nitric oxid 75.6 6.5 0.00017 19.6 5.1 71 7-97 42-115 (479)
226 PRK11921 metallo-beta-lactamas 74.9 6.8 0.00017 19.5 5.1 72 7-98 40-114 (395)
227 PRK00955 hypothetical protein; 74.1 5.9 0.00015 19.9 4.3 48 13-60 25-76 (599)
228 COG4607 CeuA ABC-type enteroch 73.8 7.2 0.00018 19.3 5.2 55 5-65 56-133 (320)
229 cd03133 GATase1_ES1 Type 1 glu 73.6 7.3 0.00019 19.3 5.0 57 41-97 73-143 (213)
230 PRK08813 threonine dehydratase 73.2 3.7 9.4E-05 21.4 3.0 53 222-283 81-133 (349)
231 PRK05408 hypothetical protein; 72.5 2.1 5.3E-05 23.2 1.6 44 386-430 10-53 (90)
232 PRK05225 ketol-acid reductoiso 72.2 2.5 6.3E-05 22.6 2.0 105 137-244 131-256 (489)
233 COG4635 HemG Flavodoxin [Energ 72.1 4.9 0.00012 20.5 3.4 47 9-57 2-54 (175)
234 COG1628 Endonuclease V homolog 71.6 8.1 0.00021 18.9 6.9 75 231-306 50-130 (185)
235 PRK08526 threonine dehydratase 71.3 8.2 0.00021 18.9 5.7 84 221-306 294-389 (403)
236 PRK12815 carB carbamoyl phosph 71.2 8.2 0.00021 18.9 5.8 83 1-89 1-122 (1068)
237 cd03148 GATase1_EcHsp31_like T 70.8 2.8 7.1E-05 22.3 2.0 48 47-94 93-144 (232)
238 pfam03358 FMN_red NADPH-depend 70.2 8.7 0.00022 18.7 4.8 34 225-259 105-139 (147)
239 COG2247 LytB Putative cell wal 69.9 8.8 0.00022 18.7 5.4 61 21-85 41-106 (337)
240 pfam09897 DUF2124 Uncharacteri 68.5 4.6 0.00012 20.7 2.6 80 5-87 17-119 (147)
241 PRK06382 threonine dehydratase 68.1 9.5 0.00024 18.4 6.8 87 219-307 290-388 (400)
242 PRK07226 fructose-bisphosphate 67.8 7.4 0.00019 19.2 3.6 19 249-269 108-126 (266)
243 cd01491 Ube1_repeat1 Ubiquitin 66.9 5.8 0.00015 20.0 2.9 66 20-89 75-141 (286)
244 TIGR02720 pyruv_oxi_spxB pyruv 66.4 5.5 0.00014 20.1 2.7 139 51-236 63-215 (577)
245 cd01425 RPS2 Ribosomal protein 66.4 10 0.00026 18.2 6.9 26 7-32 56-81 (193)
246 PRK11780 isoprenoid biosynthes 65.0 11 0.00028 18.0 4.8 58 41-98 76-147 (217)
247 KOG2946 consensus 64.2 6.2 0.00016 19.7 2.6 54 350-406 39-96 (234)
248 PRK10717 cysteine synthase A; 63.6 11 0.00029 17.8 3.9 48 210-259 259-309 (334)
249 cd03145 GAT1_cyanophycinase Ty 62.8 12 0.0003 17.7 5.5 92 5-96 27-134 (217)
250 PRK01254 hypothetical protein; 62.8 12 0.0003 17.7 4.3 42 20-61 57-102 (742)
251 TIGR00289 TIGR00289 conserved 62.2 8.2 0.00021 18.9 3.0 113 224-372 2-123 (227)
252 cd02929 TMADH_HD_FMN Trimethyl 61.9 12 0.00031 17.6 10.3 75 141-230 144-225 (370)
253 TIGR01241 FtsH_fam ATP-depende 61.7 6.4 0.00016 19.7 2.3 47 35-85 73-123 (505)
254 PRK04885 ppnK inorganic polyph 61.1 5.3 0.00013 20.3 1.8 68 9-89 2-71 (265)
255 TIGR01163 rpe ribulose-phospha 60.3 13 0.00033 17.4 4.1 69 172-248 110-191 (216)
256 PRK11145 pflA pyruvate formate 60.0 13 0.00034 17.4 4.1 68 227-298 74-147 (246)
257 TIGR02611 TIGR02611 conserved 59.8 3.1 8E-05 21.9 0.5 14 396-409 48-61 (126)
258 pfam10288 DUF2392 Protein of u 59.7 6.1 0.00016 19.8 2.0 32 363-394 29-60 (104)
259 cd06323 PBP1_ribose_binding Pe 59.3 14 0.00035 17.3 5.0 72 10-85 4-86 (268)
260 TIGR02057 PAPS_reductase phosp 58.5 14 0.00036 17.2 3.8 71 218-289 23-105 (239)
261 COG0595 mRNA degradation ribon 57.7 14 0.00037 17.1 6.8 81 5-97 28-110 (555)
262 cd01139 TroA_f Periplasmic bin 57.3 15 0.00037 17.1 5.7 57 40-98 81-147 (342)
263 PRK03372 ppnK inorganic polyph 57.2 8.7 0.00022 18.7 2.4 77 8-89 5-103 (303)
264 PRK10693 response regulator of 56.2 15 0.00039 17.0 5.7 56 1-56 1-57 (337)
265 PRK02645 ppnK inorganic polyph 55.8 9.1 0.00023 18.6 2.3 77 7-88 3-91 (304)
266 TIGR01839 PHA_synth_II poly(R) 55.7 14 0.00035 17.3 3.2 91 197-300 259-361 (560)
267 pfam07882 Fucose_iso_N2 L-fuco 55.1 16 0.0004 16.9 4.0 38 269-306 20-57 (181)
268 TIGR01383 not_thiJ DJ-1 family 54.8 8.7 0.00022 18.7 2.1 59 37-95 53-115 (186)
269 PRK05294 carB carbamoyl phosph 54.8 16 0.00041 16.8 4.4 58 1-59 1-91 (1063)
270 cd01399 GlcN6P_deaminase GlcN6 54.8 16 0.00041 16.8 9.0 105 214-329 9-122 (232)
271 TIGR02386 rpoC_TIGR DNA-direct 54.3 3.5 8.8E-05 21.6 -0.0 31 205-235 697-727 (1552)
272 cd02020 CMPK Cytidine monophos 53.9 5.9 0.00015 19.9 1.1 44 226-274 4-47 (147)
273 PRK06608 threonine dehydratase 53.8 16 0.0004 16.9 3.2 97 222-340 73-169 (330)
274 TIGR00992 3a0901s03IAP75 chlor 53.7 11 0.00027 18.1 2.4 51 320-374 391-447 (768)
275 PRK05282 peptidase E; Validate 53.4 17 0.00043 16.7 4.2 88 6-95 30-129 (233)
276 PRK03378 ppnK inorganic polyph 52.6 13 0.00034 17.4 2.7 76 8-89 6-97 (292)
277 pfam05350 GSK-3_bind Glycogen 52.4 11 0.00027 18.1 2.2 26 372-402 135-160 (160)
278 cd01543 PBP1_XylR Ligand-bindi 52.0 18 0.00045 16.5 5.7 67 11-85 4-77 (265)
279 pfam08010 Phage_30_3 Bacteriop 51.6 18 0.00046 16.5 3.4 43 284-333 30-74 (146)
280 PRK04155 chaperone protein Hch 51.5 13 0.00033 17.5 2.5 30 331-372 212-241 (288)
281 cd03129 GAT1_Peptidase_E_like 50.7 18 0.00047 16.4 6.4 90 6-95 28-130 (210)
282 CHL00148 orf27 Ycf27; Reviewed 50.1 19 0.00048 16.3 5.7 93 3-99 2-101 (240)
283 PRK03708 ppnK inorganic polyph 50.0 17 0.00043 16.7 2.9 66 18-89 16-90 (278)
284 TIGR01819 F420_cofD LPPG:Fo 2- 49.9 18 0.00046 16.4 3.1 63 213-284 255-341 (359)
285 pfam01715 IPPT IPP transferase 48.9 15 0.00039 16.9 2.6 98 189-316 22-134 (253)
286 KOG3498 consensus 48.5 13 0.00033 17.5 2.1 20 365-384 5-24 (67)
287 cd03138 GATase1_AraC_2 AraC tr 48.0 20 0.00052 16.1 3.7 54 40-95 61-120 (195)
288 TIGR00683 nanA N-acetylneurami 47.7 19 0.00049 16.3 2.9 57 151-220 122-178 (294)
289 pfam04943 Pox_F11 Poxvirus F11 47.6 20 0.00052 16.0 3.9 85 97-181 55-165 (366)
290 TIGR02079 THD1 threonine dehyd 47.1 9.6 0.00024 18.4 1.3 110 213-376 290-412 (415)
291 TIGR02340 chap_CCT_alpha T-com 46.8 16 0.00041 16.8 2.4 86 1-103 221-326 (540)
292 cd06305 PBP1_methylthioribose_ 46.6 21 0.00054 15.9 6.0 73 9-85 1-86 (273)
293 PRK02649 ppnK inorganic polyph 46.2 14 0.00035 17.3 2.0 124 51-185 69-223 (305)
294 PRK12338 hypothetical protein; 46.1 12 0.00032 17.6 1.7 117 229-373 189-309 (320)
295 PRK10710 DNA-binding transcrip 45.8 22 0.00055 15.9 5.9 96 1-99 4-105 (240)
296 cd06296 PBP1_CatR_like Ligand- 45.3 22 0.00056 15.8 5.9 62 18-85 16-84 (270)
297 PRK10991 fucI L-fucose isomera 44.3 23 0.00058 15.7 3.5 51 367-419 410-464 (588)
298 COG1609 PurR Transcriptional r 43.8 23 0.00059 15.7 7.5 75 5-85 56-143 (333)
299 cd06299 PBP1_LacI_like_13 Liga 43.7 23 0.00059 15.6 6.5 63 17-85 15-84 (265)
300 TIGR02635 RhaI_grampos L-rhamn 43.3 24 0.0006 15.6 4.1 144 148-300 82-257 (382)
301 COG0677 WecC UDP-N-acetyl-D-ma 43.3 24 0.0006 15.6 3.3 69 216-293 170-239 (436)
302 COG0045 SucC Succinyl-CoA synt 43.0 24 0.00061 15.6 5.4 10 52-61 46-55 (387)
303 cd01522 RHOD_1 Member of the R 42.5 24 0.00062 15.5 5.3 52 207-265 52-105 (117)
304 cd06273 PBP1_GntR_like_1 This 42.4 24 0.00062 15.5 6.2 63 17-85 15-84 (268)
305 pfam02142 MGS MGS-like domain. 41.3 25 0.00064 15.4 5.0 60 24-83 23-91 (92)
306 TIGR02613 mob_myst_B mobile my 41.0 8.8 0.00023 18.7 0.3 21 388-408 115-136 (189)
307 pfam01513 NAD_kinase ATP-NAD k 40.7 18 0.00045 16.5 1.8 39 46-89 31-69 (243)
308 cd01141 TroA_d Periplasmic bin 40.6 26 0.00066 15.3 4.2 42 39-86 58-99 (186)
309 KOG0912 consensus 40.6 26 0.00066 15.3 2.9 127 189-327 17-159 (375)
310 TIGR01264 tyr_amTase_E tyrosin 40.6 9.5 0.00024 18.4 0.4 92 248-381 176-280 (415)
311 TIGR02124 hypE hydrogenase exp 40.4 16 0.00042 16.8 1.6 43 75-117 99-147 (345)
312 COG0771 MurD UDP-N-acetylmuram 40.3 26 0.00067 15.3 6.3 86 2-96 2-107 (448)
313 PRK00091 miaA tRNA delta(2)-is 40.3 15 0.00037 17.1 1.3 102 191-316 61-171 (304)
314 TIGR00853 pts-lac PTS system, 40.2 26 0.00067 15.3 3.5 71 6-82 45-121 (142)
315 PRK05569 flavodoxin; Provision 40.1 26 0.00067 15.3 5.4 50 8-61 2-58 (141)
316 pfam01949 DUF99 Protein of unk 39.9 26 0.00068 15.3 6.3 74 231-305 44-123 (185)
317 TIGR01036 pyrD_sub2 dihydrooro 39.7 27 0.00068 15.2 2.9 66 205-274 284-355 (370)
318 pfam04031 Las1 Las1-like. Las1 39.6 18 0.00046 16.4 1.7 58 366-433 85-144 (149)
319 pfam01633 Choline_kinase Choli 39.5 27 0.00068 15.2 2.9 15 9-23 4-18 (208)
320 COG4468 GalT Galactose-1-phosp 39.5 27 0.00069 15.2 3.9 132 281-442 321-489 (503)
321 cd02933 OYE_like_FMN Old yello 39.4 27 0.00069 15.2 10.5 56 169-230 165-226 (338)
322 COG1513 CynS Cyanate lyase [In 39.4 24 0.00062 15.5 2.4 28 373-400 47-77 (151)
323 cd06287 PBP1_LacI_like_8 Ligan 39.3 27 0.00069 15.2 6.4 67 13-85 19-85 (269)
324 cd06310 PBP1_ABC_sugar_binding 38.9 27 0.0007 15.1 5.9 67 14-85 8-88 (273)
325 pfam04362 Iron_traffic Bacteri 38.8 16 0.00041 16.8 1.4 43 387-430 10-52 (87)
326 pfam00365 PFK Phosphofructokin 38.7 8.1 0.00021 18.9 -0.2 42 52-93 3-44 (279)
327 PRK01390 murD UDP-N-acetylmura 38.4 28 0.00071 15.1 7.4 75 4-85 6-99 (457)
328 PRK05568 flavodoxin; Provision 38.2 28 0.00072 15.1 5.3 50 8-61 2-58 (142)
329 cd01021 GEWL Goose Egg White L 38.2 27 0.00068 15.2 2.4 46 175-221 90-135 (166)
330 cd03136 GATase1_AraC_ArgR_like 38.1 28 0.00072 15.1 3.6 53 40-95 56-111 (185)
331 TIGR00693 thiE thiamine-phosph 37.9 28 0.00072 15.0 5.3 73 261-334 51-140 (210)
332 pfam04937 DUF659 Protein of un 37.7 29 0.00073 15.0 3.6 55 180-239 54-108 (153)
333 KOG4380 consensus 37.4 24 0.00061 15.5 2.1 21 77-98 66-86 (244)
334 pfam04409 DUF530 Protein of un 37.3 20 0.00051 16.1 1.7 10 250-259 198-207 (512)
335 cd06267 PBP1_LacI_sugar_bindin 37.1 29 0.00074 15.0 6.1 62 18-85 16-84 (264)
336 PRK06110 hypothetical protein; 37.0 29 0.00074 14.9 2.5 48 225-281 73-120 (321)
337 TIGR01359 UMP_CMP_kin_fam UMP- 37.0 18 0.00047 16.4 1.4 43 15-61 41-89 (189)
338 TIGR02025 BchH magnesium chela 36.6 25 0.00065 15.4 2.1 22 16-39 508-529 (1384)
339 pfam11116 DUF2624 Protein of u 36.5 25 0.00064 15.4 2.1 49 261-311 32-80 (84)
340 PRK05723 flavodoxin; Provision 36.2 30 0.00077 14.9 4.9 46 9-56 2-53 (151)
341 COG3580 Uncharacterized protei 36.0 30 0.00077 14.8 3.9 45 28-88 28-75 (351)
342 PRK02155 ppnK inorganic polyph 36.0 30 0.00077 14.8 4.3 76 8-89 6-97 (291)
343 cd06274 PBP1_FruR Ligand bindi 35.7 31 0.00078 14.8 6.9 70 10-85 4-84 (264)
344 TIGR00108 eRF peptide chain re 35.5 15 0.00037 17.1 0.7 17 180-197 398-414 (425)
345 COG0773 MurC UDP-N-acetylmuram 35.3 31 0.00079 14.8 5.4 131 23-179 44-177 (459)
346 PRK10419 nikE nickel transport 35.2 31 0.00079 14.8 3.5 33 366-398 111-150 (266)
347 cd06815 PLPDE_III_AR_like_1 Ty 35.1 31 0.0008 14.7 5.4 66 234-302 99-171 (353)
348 KOG4129 consensus 34.9 31 0.0008 14.7 7.6 70 238-322 175-248 (377)
349 TIGR00673 cynS cyanate hydrata 34.5 28 0.0007 15.1 2.0 28 367-394 46-73 (156)
350 pfam07991 IlvN Acetohydroxy ac 34.4 32 0.00082 14.7 3.5 30 6-36 3-32 (165)
351 cd02021 GntK Gluconate kinase 34.3 32 0.00082 14.7 3.2 58 225-293 3-60 (150)
352 cd02932 OYE_YqiM_FMN Old yello 34.0 33 0.00083 14.6 9.8 133 169-339 167-307 (336)
353 TIGR02378 nirD_assim_sml nitri 33.8 33 0.00084 14.6 3.2 33 142-174 8-45 (117)
354 TIGR02477 PFKA_PPi diphosphate 33.6 23 0.00058 15.7 1.5 44 209-255 157-201 (566)
355 PRK08227 aldolase; Validated 33.4 33 0.00085 14.6 2.9 61 246-322 133-198 (291)
356 KOG2707 consensus 33.4 33 0.00085 14.5 4.7 105 50-178 103-211 (405)
357 TIGR01208 rmlA_long glucose-1- 33.4 21 0.00054 16.0 1.3 77 160-258 144-226 (361)
358 smart00653 eIF2B_5 domain pres 33.2 19 0.00049 16.3 1.0 77 176-254 8-85 (110)
359 cd01545 PBP1_SalR Ligand-bindi 33.2 33 0.00085 14.5 6.8 62 19-85 17-86 (270)
360 PHA01622 CRISPR-associated Cas 32.8 34 0.00086 14.5 2.9 40 13-61 49-89 (204)
361 PRK03202 6-phosphofructokinase 32.7 9.6 0.00024 18.4 -0.6 41 52-92 5-45 (323)
362 cd00674 LysRS_core_class_I Thi 32.5 34 0.00087 14.5 4.3 29 19-47 43-71 (354)
363 KOG0303 consensus 32.4 34 0.00088 14.4 4.8 33 144-178 110-142 (472)
364 PRK13403 ketol-acid reductoiso 32.1 35 0.00089 14.4 3.7 31 5-36 14-44 (335)
365 COG1636 Uncharacterized protei 32.1 35 0.00089 14.4 7.5 102 221-323 2-111 (204)
366 PRK00561 ppnK inorganic polyph 32.1 21 0.00054 16.0 1.1 66 9-89 2-67 (259)
367 cd01391 Periplasmic_Binding_Pr 32.1 35 0.00089 14.4 4.2 62 21-87 20-90 (269)
368 cd06292 PBP1_LacI_like_10 Liga 32.0 35 0.00089 14.4 6.4 67 17-85 15-89 (273)
369 cd01400 6PGL 6PGL: 6-Phosphogl 31.9 35 0.00089 14.4 9.4 112 209-331 8-129 (219)
370 PRK00683 murD UDP-N-acetylmura 31.8 35 0.0009 14.4 6.2 70 7-84 3-88 (418)
371 cd01542 PBP1_TreR_like Ligand- 31.8 35 0.0009 14.4 6.1 71 10-86 4-85 (259)
372 PRK10037 cell division protein 31.5 36 0.00091 14.3 2.9 51 225-286 5-58 (250)
373 PRK00766 hypothetical protein; 31.5 36 0.00091 14.3 7.1 76 231-307 51-133 (194)
374 COG3828 Uncharacterized protei 31.3 36 0.00091 14.3 2.4 62 76-140 77-149 (239)
375 pfam12023 DUF3511 Domain of un 31.1 25 0.00064 15.4 1.3 10 295-304 2-11 (47)
376 cd06343 PBP1_ABC_ligand_bindin 31.0 36 0.00092 14.3 4.0 14 75-88 94-107 (362)
377 PRK03846 adenylylsulfate kinas 31.0 35 0.0009 14.4 2.1 61 202-262 5-65 (198)
378 TIGR01812 sdhA_frdA_Gneg succi 30.9 15 0.00039 16.9 0.2 49 242-293 498-546 (636)
379 PTZ00340 O-sialoglycoprotein e 30.8 21 0.00054 15.9 0.9 35 49-86 76-115 (348)
380 PRK10917 ATP-dependent DNA hel 30.8 37 0.00093 14.3 7.3 93 186-284 244-341 (677)
381 TIGR00174 miaA tRNA delta(2)-i 30.5 33 0.00085 14.5 1.9 111 180-311 45-156 (307)
382 TIGR02534 mucon_cyclo muconate 30.2 19 0.00047 16.4 0.5 63 349-421 305-368 (369)
383 pfam01606 Arteri_env Arterivir 30.0 9.5 0.00024 18.4 -1.0 70 138-239 87-156 (211)
384 PRK10558 alpha-dehydro-beta-de 30.0 38 0.00096 14.2 3.6 72 198-274 185-256 (256)
385 COG1004 Ugd Predicted UDP-gluc 29.9 38 0.00096 14.2 3.1 43 391-435 301-344 (414)
386 pfam09075 STb_secrete Heat-sta 29.9 13 0.00034 17.4 -0.2 16 82-97 32-47 (48)
387 cd05294 LDH-like_MDH_nadp A la 29.7 38 0.00097 14.1 4.5 25 225-249 4-28 (309)
388 cd06275 PBP1_PurR Ligand-bindi 29.7 38 0.00097 14.1 6.8 64 17-85 15-85 (269)
389 PRK08639 threonine dehydratase 29.6 38 0.00097 14.1 7.3 27 220-246 301-328 (418)
390 PRK06756 flavodoxin; Provision 29.5 38 0.00098 14.1 4.1 46 20-69 9-56 (138)
391 cd05719 Ig2_PVR_like Second im 29.4 25 0.00064 15.4 1.1 13 166-178 70-82 (95)
392 PRK02231 ppnK inorganic polyph 29.4 38 0.00098 14.1 2.7 41 42-88 35-75 (272)
393 TIGR03239 GarL 2-dehydro-3-deo 29.2 39 0.00099 14.1 3.8 73 197-274 177-249 (249)
394 cd06285 PBP1_LacI_like_7 Ligan 29.2 39 0.00099 14.1 6.8 70 10-85 4-84 (265)
395 cd06346 PBP1_ABC_ligand_bindin 29.0 39 0.00099 14.1 4.3 33 308-341 257-293 (312)
396 pfam06611 DUF1145 Protein of u 29.0 20 0.00051 16.1 0.5 14 396-409 23-37 (61)
397 cd01467 vWA_BatA_type VWA BatA 28.8 39 0.001 14.0 3.6 72 186-257 64-142 (180)
398 pfam06414 Zeta_toxin Zeta toxi 28.7 31 0.0008 14.7 1.5 14 49-62 10-23 (191)
399 PRK02006 murD UDP-N-acetylmura 28.5 40 0.001 14.0 8.3 88 1-93 1-112 (501)
400 cd01537 PBP1_Repressors_Sugar_ 28.5 40 0.001 14.0 6.7 67 14-85 8-85 (264)
401 cd06281 PBP1_LacI_like_5 Ligan 28.2 40 0.001 14.0 6.8 70 10-84 4-84 (269)
402 pfam03530 SK_channel Calcium-a 28.1 22 0.00055 15.9 0.6 12 392-403 105-116 (120)
403 cd06278 PBP1_LacI_like_2 Ligan 28.0 40 0.001 13.9 5.9 70 10-85 4-83 (266)
404 KOG3395 consensus 27.9 30 0.00077 14.8 1.3 22 288-311 29-50 (246)
405 PRK04759 consensus 27.8 41 0.001 13.9 3.4 91 1-99 1-121 (294)
406 COG1232 HemY Protoporphyrinoge 27.7 17 0.00043 16.7 -0.1 34 369-402 359-393 (444)
407 TIGR01265 tyr_nico_aTase tyros 27.5 41 0.0011 13.9 2.7 28 51-83 226-253 (424)
408 cd03334 Fab1_TCP TCP-1 like do 27.5 41 0.0011 13.9 6.8 31 206-239 116-146 (261)
409 PRK11761 cysM cysteine synthas 27.4 41 0.0011 13.9 4.1 83 195-286 32-118 (296)
410 KOG0628 consensus 27.4 41 0.0011 13.9 5.1 111 160-287 154-274 (511)
411 PRK11248 tauB taurine transpor 27.3 42 0.0011 13.8 6.0 32 207-238 103-138 (255)
412 pfam11186 DUF2972 Protein of u 27.3 42 0.0011 13.8 2.5 50 284-341 121-184 (197)
413 PRK04804 minC septum formation 27.2 42 0.0011 13.8 2.6 110 71-185 63-187 (220)
414 cd00363 PFK Phosphofructokinas 26.9 14 0.00037 17.1 -0.5 41 53-93 4-44 (338)
415 cd06303 PBP1_LuxPQ_Quorum_Sens 26.8 42 0.0011 13.8 5.0 52 9-60 1-70 (280)
416 cd01541 PBP1_AraR Ligand-bindi 26.8 42 0.0011 13.8 7.0 76 10-86 4-90 (273)
417 cd06277 PBP1_LacI_like_1 Ligan 26.7 43 0.0011 13.8 6.0 62 17-85 18-86 (268)
418 cd01528 RHOD_2 Member of the R 26.5 43 0.0011 13.8 5.6 46 212-260 48-94 (101)
419 cd02930 DCR_FMN 2,4-dienoyl-Co 26.4 43 0.0011 13.7 9.0 135 169-341 150-295 (353)
420 PRK05479 ketol-acid reductoiso 26.4 43 0.0011 13.7 3.6 31 5-36 15-45 (336)
421 COG0426 FpaA Uncharacterized f 26.1 44 0.0011 13.7 6.2 44 51-99 73-118 (388)
422 pfam03575 Peptidase_S51 Peptid 25.9 44 0.0011 13.7 3.9 75 19-93 1-83 (154)
423 PRK10116 universal stress prot 25.8 44 0.0011 13.7 3.6 34 223-256 4-40 (142)
424 cd06544 GH18_narbonin Narbonin 25.6 44 0.0011 13.6 2.0 34 199-232 47-80 (253)
425 PRK01911 ppnK inorganic polyph 25.5 45 0.0011 13.6 2.9 124 50-184 62-215 (290)
426 PRK04011 peptide chain release 25.5 25 0.00064 15.4 0.5 34 225-259 219-253 (409)
427 TIGR01919 hisA-trpF bifunction 25.4 45 0.0011 13.6 3.1 104 171-286 31-139 (246)
428 pfam00056 Ldh_1_N lactate/mala 25.3 45 0.0011 13.6 2.6 46 225-271 4-49 (142)
429 COG4126 Hydantoin racemase [Am 25.3 45 0.0011 13.6 4.0 44 50-100 69-112 (230)
430 TIGR01428 HAD_type_II haloacid 25.3 45 0.0011 13.6 2.1 41 18-61 86-126 (207)
431 pfam08665 PglZ PglZ domain. Th 25.2 45 0.0012 13.6 4.5 48 182-235 77-124 (176)
432 KOG2316 consensus 25.2 45 0.0012 13.6 3.5 165 224-421 2-187 (277)
433 cd02187 beta_tubulin The tubul 25.1 45 0.0012 13.6 3.5 63 171-245 80-154 (425)
434 PRK11914 diacylglycerol kinase 24.9 46 0.0012 13.6 5.7 77 3-85 2-91 (304)
435 COG0563 Adk Adenylate kinase a 24.8 46 0.0012 13.5 2.2 35 225-264 4-38 (178)
436 pfam00091 Tubulin Tubulin/FtsZ 24.8 46 0.0012 13.5 3.5 52 194-245 82-144 (210)
437 pfam07085 DRTGG DRTGG domain. 24.8 46 0.0012 13.5 2.2 74 8-91 22-97 (105)
438 cd06312 PBP1_ABC_sugar_binding 24.8 46 0.0012 13.5 6.1 81 234-319 166-255 (271)
439 smart00732 YqgFc Likely ribonu 24.7 17 0.00042 16.7 -0.5 25 46-71 47-71 (99)
440 COG0287 TyrA Prephenate dehydr 24.7 46 0.0012 13.5 4.8 52 6-58 2-53 (279)
441 TIGR02198 rfaE_dom_I rfaE bifu 24.7 16 0.0004 16.9 -0.6 153 7-196 113-282 (321)
442 PRK10411 DNA-binding transcrip 24.6 46 0.0012 13.5 4.2 27 171-197 141-169 (240)
443 TIGR01811 sdhA_Bsu succinate d 24.6 46 0.0012 13.5 1.8 49 374-423 456-504 (620)
444 pfam08929 DUF1911 Domain of un 24.4 47 0.0012 13.5 2.9 26 375-400 83-109 (111)
445 cd07186 CofD_like LPPG:FO 2-ph 24.4 47 0.0012 13.5 5.2 55 169-224 159-215 (303)
446 TIGR01016 sucCoAbeta succinyl- 24.3 27 0.00069 15.2 0.5 48 227-274 287-338 (389)
447 cd06557 KPHMT-like Ketopantoat 24.1 47 0.0012 13.5 3.9 13 73-85 121-133 (254)
448 cd01536 PBP1_ABC_sugar_binding 24.1 47 0.0012 13.5 7.2 72 10-85 4-86 (267)
449 pfam03613 EIID-AGA PTS system 24.1 39 0.00099 14.1 1.3 16 290-307 40-55 (264)
450 TIGR02653 Lon_rel_chp conserve 24.1 47 0.0012 13.4 2.0 90 21-115 206-316 (677)
451 TIGR02055 APS_reductase adenyl 24.1 47 0.0012 13.4 5.1 143 232-400 3-167 (200)
452 cd01518 RHOD_YceA Member of th 24.0 47 0.0012 13.4 4.7 44 216-262 55-99 (101)
453 cd02197 HypE HypE (Hydrogenase 24.0 32 0.00082 14.6 0.9 35 375-417 238-272 (293)
454 PRK01231 ppnK inorganic polyph 24.0 48 0.0012 13.4 3.8 76 8-89 5-96 (296)
455 PRK11303 DNA-binding transcrip 23.9 48 0.0012 13.4 8.3 77 4-85 58-147 (330)
456 KOG0174 consensus 23.9 29 0.00075 14.9 0.6 44 192-237 153-196 (224)
457 pfam09656 PGPGW Putative trans 23.8 21 0.00054 16.0 -0.1 14 396-409 19-32 (53)
458 pfam08190 PIH1 pre-RNA process 23.7 46 0.0012 13.5 1.6 29 169-197 98-126 (325)
459 TIGR02080 O_succ_thio_ly O-suc 23.7 17 0.00044 16.6 -0.6 32 231-262 328-362 (383)
460 cd06320 PBP1_allose_binding Pe 23.6 48 0.0012 13.4 6.8 97 221-318 152-253 (275)
461 TIGR03676 aRF1/eRF1 peptide ch 23.6 38 0.00097 14.1 1.2 35 225-260 212-247 (403)
462 pfam06483 ChiC Chitinase C. Th 23.6 48 0.0012 13.4 1.8 18 16-33 5-22 (179)
463 cd06333 PBP1_ABC-type_HAAT_lik 23.4 49 0.0012 13.4 6.2 14 307-320 262-275 (312)
464 cd00717 URO-D Uroporphyrinogen 23.4 49 0.0012 13.4 3.0 123 206-339 111-250 (335)
465 cd06282 PBP1_GntR_like_2 Ligan 23.3 49 0.0012 13.3 6.8 69 11-84 5-84 (266)
466 pfam03421 YopJ YopJ Serine/Thr 23.3 46 0.0012 13.5 1.5 22 273-294 42-63 (178)
467 COG3048 DsdA D-serine dehydrat 23.3 49 0.0012 13.3 2.4 58 216-291 161-218 (443)
468 COG5552 Uncharacterized conser 23.1 49 0.0013 13.3 1.7 48 267-321 4-52 (88)
469 pfam06490 FleQ Flagellar regul 22.9 50 0.0013 13.3 4.3 73 9-85 1-75 (109)
470 PTZ00285 glucosamine-6-phospha 22.8 50 0.0013 13.3 8.4 105 211-330 19-137 (253)
471 KOG2275 consensus 22.8 45 0.0012 13.6 1.4 255 85-396 49-324 (420)
472 cd06268 PBP1_ABC_transporter_L 22.8 50 0.0013 13.3 3.7 16 75-90 86-101 (298)
473 PRK08558 adenine phosphoribosy 22.5 51 0.0013 13.2 2.1 28 163-191 199-226 (238)
474 KOG4328 consensus 22.5 51 0.0013 13.2 1.8 31 162-192 181-217 (498)
475 pfam07796 DUF1638 Protein of u 22.5 51 0.0013 13.2 4.4 48 246-293 115-162 (166)
476 cd03556 L-fucose_isomerase L-f 22.5 51 0.0013 13.2 4.2 51 367-419 406-460 (584)
477 TIGR03174 cas_Csc3 CRISPR-asso 22.3 36 0.00093 14.3 0.8 62 228-300 395-460 (953)
478 COG4047 Uncharacterized protei 22.2 24 0.00061 15.6 -0.1 39 214-252 16-57 (243)
479 PRK11083 DNA-binding response 22.2 51 0.0013 13.2 5.6 89 7-99 3-99 (229)
480 PRK13777 transcriptional regul 22.2 51 0.0013 13.2 1.8 21 302-322 152-172 (190)
481 COG1647 Esterase/lipase [Gener 22.2 51 0.0013 13.2 2.1 163 132-331 16-190 (243)
482 cd06950 NR_LBD_Tlx_PNR_like Th 22.2 18 0.00045 16.5 -0.8 43 175-220 26-68 (206)
483 PRK12305 thrS threonyl-tRNA sy 22.1 51 0.0013 13.2 4.1 21 65-85 50-73 (576)
484 pfam01380 SIS SIS domain. SIS 22.1 52 0.0013 13.2 4.4 86 6-94 4-96 (131)
485 pfam09949 DUF2183 Uncharacteri 22.0 52 0.0013 13.2 5.5 70 183-256 26-98 (100)
486 pfam02614 UxaC Glucuronate iso 22.0 52 0.0013 13.2 1.8 204 147-394 133-344 (465)
487 PRK12933 secD preprotein trans 21.9 50 0.0013 13.3 1.5 47 208-256 231-290 (604)
488 cd01575 PBP1_GntR Ligand-bindi 21.8 52 0.0013 13.1 7.1 68 10-83 4-82 (268)
489 pfam02548 Pantoate_transf Keto 21.8 52 0.0013 13.1 3.7 29 5-36 13-41 (261)
490 cd06271 PBP1_AglR_RafR_like Li 21.8 52 0.0013 13.1 6.9 63 17-85 19-88 (268)
491 cd01085 APP X-Prolyl Aminopept 21.8 50 0.0013 13.3 1.5 18 2-19 76-93 (224)
492 cd06315 PBP1_ABC_sugar_binding 21.8 52 0.0013 13.1 2.6 38 43-84 49-86 (280)
493 KOG2011 consensus 21.7 41 0.001 13.9 1.0 28 189-216 116-143 (1048)
494 cd01423 MGS_CPS_I_III Methylgl 21.6 53 0.0013 13.1 4.5 60 24-83 36-105 (116)
495 smart00427 H2B Histone H2B. 21.6 44 0.0011 13.7 1.1 23 174-196 13-35 (89)
496 cd05296 GH4_P_beta_glucosidase 21.6 51 0.0013 13.2 1.5 58 23-96 114-176 (419)
497 COG4077 Uncharacterized protei 21.4 45 0.0011 13.6 1.2 27 307-335 75-101 (156)
498 KOG1975 consensus 21.3 27 0.00069 15.2 0.0 18 379-398 301-318 (389)
499 TIGR00434 cysH phosophoadenyly 21.2 54 0.0014 13.1 4.4 61 223-285 14-81 (226)
500 PRK01438 murD UDP-N-acetylmura 21.2 54 0.0014 13.1 6.8 77 2-84 9-106 (481)
No 1
>PRK00074 guaA GMP synthase; Reviewed
Probab=100.00 E-value=0 Score=1750.15 Aligned_cols=512 Identities=59% Similarity=1.006 Sum_probs=505.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 44886999988970578899888865940698528989889972399799998538899999997537689808998899
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLG 84 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILG 84 (520)
.++++|+||||||||||||||||||+||||||+|+++++++++..+|+||||||||+|||++++|++++++|++++||||
T Consensus 2 ~~~~~IlIlDFGSQytqLIaRRvRElgVysEI~p~~~~~~~i~~~~pkgIILSGGP~SV~~~~aP~~d~~if~l~IPILG 81 (513)
T PRK00074 2 IHHDKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEGAPRADPEIFELGVPVLG 81 (513)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEE
T ss_conf 87686999988964999999999823835999669999899850499789988999636899998899899826998699
Q ss_pred ECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEEE
Q ss_conf 77899998997096999869866103667523886222787266553368600220110124442112323983178898
Q gi|254780414|r 85 ICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIA 164 (520)
Q Consensus 85 ICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~ 164 (520)
||||||+||+.|||+|++++.+|||++.+.+.++++||+|+ +..++|||||+|+|+++|+||+++|+|+|+++|||+
T Consensus 82 ICYG~Qlia~~~GG~V~~s~~rEyG~a~l~i~~~s~Lf~gl---~~~~~VWMSHgD~V~~lP~gF~viA~s~n~~iAai~ 158 (513)
T PRK00074 82 ICYGMQLMAHQLGGKVERAGKREYGRAELEVDGDSALFKGI---PEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIA 158 (513)
T ss_pred ECHHHHHHHHHHCCEEEECCCCEECCEEEEEECCCCCCCCC---CCCCEEEEECCCCEEECCCCCEEEEECCCCCEEEEE
T ss_conf 75889999998599998569601121489991587333689---986368875243014379984799954997367898
Q ss_pred ECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 63500112465212221520257799875501064411140678999999997650444036640564047799999986
Q gi|254780414|r 165 DEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYE 244 (520)
Q Consensus 165 ~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~k 244 (520)
|.++++||+||||||+||++|++||+||+|+||+|++||+|++|+++++++||++||++||||||||||||||||+|+||
T Consensus 159 ~~~~~iyGvQFHPEV~HT~~G~~iL~NFl~~Ic~~~~~Wt~~~~i~~~i~~Ik~~Vg~~kVi~~lSGGVDStV~A~Ll~k 238 (513)
T PRK00074 159 NEERKFYGVQFHPEVTHTEQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLHK 238 (513)
T ss_pred ECCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 06786788702863453177579999999998788977637899999999999983876289972388308999999999
Q ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 22365699997389551562789999886236985799758899999966898889999887565899999999743997
Q gi|254780414|r 245 AIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGA 324 (520)
Q Consensus 245 Aig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~ 324 (520)
|||+||+|||||||||||||+++|++.|++++|+|+++|||+++||++|+||+|||+||||||++||+||+++|++++++
T Consensus 239 AIGd~l~cvfVD~GllRknE~~~V~~~~~~~lgl~~~~vdA~~~Fl~~L~gv~DPE~KRKIIG~~FI~vfe~~a~~~~~~ 318 (513)
T PRK00074 239 AIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGV 318 (513)
T ss_pred HHHHCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 85112489995377111672999999998861996799224899999737998979967887789999999999757998
Q ss_pred EEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCE
Q ss_conf 09986462202454202467776303443023201132032022378987389999999981999889426888983111
Q gi|254780414|r 325 QFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLA 404 (520)
Q Consensus 325 ~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLa 404 (520)
+||||||||||||||++. +++|++|||||||||||++|++||+||||+|||||||+||++||||+++++||||||||||
T Consensus 319 ~~L~QGTlYPDvIES~~~-~~~a~~IKsHHNVgglp~~~~~~lvEPlr~lfKDEVR~lg~~Lglp~~~~~RhPFPGPGLa 397 (513)
T PRK00074 319 KFLAQGTLYPDVIESASG-TGKAATIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLA 397 (513)
T ss_pred CEEECCCCCCCEEEECCC-CCCCCCCCCCCCCCCCHHHCCCEEEEEHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCHH
T ss_conf 399646765506884798-9998860487758788566487545031756158999999996897776024899997444
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 22100036789999999999999999864653332201045568632421599854144799963216877558710189
Q gi|254780414|r 405 IRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHD 484 (520)
Q Consensus 405 iRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q~~avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~ 484 (520)
|||+||+|+||+++||+||+||+++|+++|||+++|||||||||+||||||||+|||+|+|+||+|+|.|||||+|+++|
T Consensus 398 iRi~Gevt~e~~~ilr~ad~I~~~~l~~~~ly~~i~Q~favllpvksvGV~Gd~R~y~~~~~lR~v~s~D~MTa~~~~~p 477 (513)
T PRK00074 398 IRILGEVTKEKLDILREADAIFIEELRKAGLYDKIWQAFAVLLPVRSVGVMGDGRTYDYVVALRAVTSIDGMTADWARLP 477 (513)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 30334357889999998889999999875760105451079717632564899755577589997864776504754499
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 899998755750487981257860894179766689
Q gi|254780414|r 485 MNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 (520)
Q Consensus 485 ~~~l~~is~~i~n~v~~v~rV~ydit~Kpp~tiewE 520 (520)
|++|+++|+||+|||+||||||||||||||||||||
T Consensus 478 ~~~L~~is~rI~nev~gv~rV~yDitsKPP~TiEwE 513 (513)
T PRK00074 478 YDFLEKISNRIINEVKGVNRVVYDITSKPPATIEWE 513 (513)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 999999999987618983269986899899786679
No 2
>KOG1622 consensus
Probab=100.00 E-value=0 Score=1348.69 Aligned_cols=515 Identities=44% Similarity=0.758 Sum_probs=499.2
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 34488699998897057889988886594069852898988997239979999853889999999753768980899889
Q gi|254780414|r 4 RERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 4 ~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
....++|+||||||||+|+|+||+||++||+|++|+++++..+.+.+|+||||||||+|||+++||++|+++|++++|+|
T Consensus 13 ~~~~d~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~vpvL 92 (552)
T KOG1622 13 SSYFDTILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELGVPVL 92 (552)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCE
T ss_conf 55576389994441243788989988754331013777156664479429998189873226768889836713277430
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEE
Q ss_conf 97789999899709699986986610366752388622278726655336860022011012444211232398317889
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFI 163 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai 163 (520)
|||||||+|++.+||.|.+...||||..+|.+...+.+|.++... ....|||||||++.++|+||++.|.|.+.+++++
T Consensus 93 GICYGmQ~i~~~~Gg~V~~~~~RE~G~~eI~v~~~~~lF~~~~~~-~~~~VlltHgdsl~~v~~g~kv~a~s~n~~va~i 171 (552)
T KOG1622 93 GICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGLHKT-EFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAGI 171 (552)
T ss_pred EEHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCC-CEEEEEECCCCCHHHCCCCCEEEEEECCCCEEEE
T ss_conf 201679999998387502462357787347758615665432324-1036610056206444454246776168612211
Q ss_pred EECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 86350011246521222152025779987550106441114067899999999765044403664056404779999998
Q gi|254780414|r 164 ADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIY 243 (520)
Q Consensus 164 ~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~ 243 (520)
.|+.+++||+||||||+||++|++||+||+|+||+|++||+|+|+.+++|.+||+.||+.+||+++||||||||||+|++
T Consensus 172 ~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~ 251 (552)
T KOG1622 172 LNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEECINEIRKWVGDYKVLVAVSGGVDSTVCAALLR 251 (552)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 01100320678888310367566899989998717766751103568899999998464455998348850899999999
Q ss_pred HHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6223-656999973895515627899998862369857997588999999668988899998875658999999997439
Q gi|254780414|r 244 EAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG 322 (520)
Q Consensus 244 kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~ 322 (520)
+|+| +|++|++||||||||+|+++|++.+.. +|++++++||+++|+++|+|++|||+||||||++||+||++++.++.
T Consensus 252 ~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~-lgi~i~v~~as~~f~s~L~~~~dPE~KRkiIG~tfikv~~~~~~~l~ 330 (552)
T KOG1622 252 RALGPDRVHAIHVDNGFMRKKEAEQVEKTLVY-LGIPITVVDASETFLSKLKGVTDPEEKRKIIGRTFIKVFDPVASELN 330 (552)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHH-CCCCEEEEECHHHHHHHHCCCCCHHHHCEECCCCEEEECCHHHHHHH
T ss_conf 86378944899812640103677889999997-38844996215888876126688788161024200240767888752
Q ss_pred -----CCEEEEECCCCCHHHHHHCCCCC-CCCEEEEEECCCCHHHHH-CC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHC
Q ss_conf -----97099864622024542024677-763034430232011320-32-02237898738999999998199988942
Q gi|254780414|r 323 -----GAQFLGQGTLYPDVIESISFFGG-PSSIIKSHHNVGGLPEHM-DM-KLVEPLKELFKDEVRLLGKELRLPDSFVE 394 (520)
Q Consensus 323 -----~~~~L~QGTlypDvIES~~~~~~-~~~~IKsHHNvgglp~~~-~~-~liEPl~~l~KdEVR~lg~~Lglp~~~~~ 394 (520)
...||||||||||+|||++..++ +|++||||||++||+++| ++ |++|||++|||||||+||+.||+|+++++
T Consensus 331 ~k~~~~~~flaQgtL~Pd~ieS~s~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEvr~lgk~lGlp~~Lv~ 410 (552)
T KOG1622 331 KKHGEKESFLAQGTLRPDLIESASVYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEVRELGKDLGLPESLVP 410 (552)
T ss_pred HCCCCCCEEEECCCCCCHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 06576000443350141044313456773454420102550589999983165742678888999876665087243202
Q ss_pred CCCCCCCCCEEEECCCCCH---HHHHHHHHHHHHHHHHHH-HCCCHHHHHHHH---EEECCCCCCCCCCCCCCCCCEEEE
Q ss_conf 6888983111221000367---899999999999999998-646533322010---455686324215998541447999
Q gi|254780414|r 395 RHPCPGPGLAIRCIGEITE---ERINILRESDAIYREEIH-KAGIYRKIWQAF---TVLLPVQTVGVMGDERTYEYVCSL 467 (520)
Q Consensus 395 RhPFPGPGLaiRi~g~vt~---e~~~i~r~ad~i~~~~l~-~~~ly~~~~q~~---avllp~~svGv~GD~R~y~~~~~l 467 (520)
||||||||||||+||+++. ..++++|++|.+|+++++ ++++|+.+||+| |.+||+||||||||.|+|+|+|+|
T Consensus 411 rhPfpGPgLaIRvL~~~~~~~~~~~~ii~~~~~~f~~~i~~~~glye~i~q~f~~~A~llpirtvGVqgDkrsys~vial 490 (552)
T KOG1622 411 RHPFPGPGLAIRVLCAVTARDLPQLEIIRKVDRIFIKSIRKDHGLYERIIQAFQIPARLLPIRTVGVQGDKRSYSYVIAL 490 (552)
T ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEECCEEEEEEECCCCEECEEEEC
T ss_conf 58999987278875214555552778999999999988532401588887525676233212346642364000217843
Q ss_pred -----EEEECCCCCCCCCCC----CCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf -----632168775587101----89899998755750487981257860894179766689
Q gi|254780414|r 468 -----RAVTSIDGMTADFYH----HDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 (520)
Q Consensus 468 -----r~v~s~d~mta~~~~----~~~~~l~~is~~i~n~v~~v~rV~ydit~Kpp~tiewE 520 (520)
|+++|.|||||+|+. +|.++|.+++++|.|+|+|||||+||+|||||||+|||
T Consensus 491 PPr~~R~~~t~DFMTg~p~~pg~e~p~k~l~kmvt~I~nkv~GIsRVlyDlTSKPPgTtEWE 552 (552)
T KOG1622 491 PPRPLRAFTTSDFMTGDPATPGNEFPVKFLLKMVTEICNKVPGISRVLYDLTSKPPGTTEWE 552 (552)
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf 78666632414432368889776163999999999998608547777763046999875789
No 3
>TIGR00884 guaA_Cterm GMP synthase, C-terminal domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations . GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains .; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process.
Probab=100.00 E-value=0 Score=1271.18 Aligned_cols=314 Identities=64% Similarity=1.029 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 78999999997650444036640564047799999986223656999973895515627899998862369857997588
Q gi|254780414|r 207 SYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDAS 286 (520)
Q Consensus 207 ~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~ 286 (520)
+|+++.|++||++|||+||||||||||||||||+|+|||||||||||||||||||+||.|+|+++|++.+|+|+.+|||+
T Consensus 1 ~fi~~~i~~ir~~VGD~~vi~ALSGGVDSsV~A~L~hrAIGD~L~~vFVD~GLlR~gE~E~V~~~F~~~lg~nl~~VDA~ 80 (319)
T TIGR00884 1 NFIEEAIEEIREQVGDAKVIIALSGGVDSSVAAVLLHRAIGDRLTCVFVDHGLLRKGEAERVVKTFSDKLGLNLVVVDAK 80 (319)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf 93688999998522884689981088158999999986422760489822788876637899999875308982787610
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEEECCCCCHHHHHHCCCC-CCCCEEEEEECCCCHHHH
Q ss_conf 9999996689888999988756589999999974399---709986462202454202467-776303443023201132
Q gi|254780414|r 287 ERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGG---AQFLGQGTLYPDVIESISFFG-GPSSIIKSHHNVGGLPEH 362 (520)
Q Consensus 287 ~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~---~~~L~QGTlypDvIES~~~~~-~~~~~IKsHHNvgglp~~ 362 (520)
|+||++|+||+|||+||||||++||+|||++|+++++ ++||+|||||||||||++..| +.|++|||||||||||++
T Consensus 81 e~FL~~L~GV~DPE~KRKIIG~~FI~VFE~~A~~~~~~~~a~yL~QGTlYPDvIES~~~kG~~~a~~IKsHHNVGGLP~~ 160 (319)
T TIGR00884 81 ERFLSALKGVTDPEEKRKIIGRVFIEVFEREAEKIGDKKKAEYLVQGTLYPDVIESASSKGTSGAATIKSHHNVGGLPED 160 (319)
T ss_pred HHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79887528898703413112256677788899850799779999734344746460230477647645631066888542
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 03202237898738999999998199988942688898311122100036789999999999999999864653332201
Q gi|254780414|r 363 MDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQA 442 (520)
Q Consensus 363 ~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q~ 442 (520)
|+||||||||+|||||||+||++||||++|++|||||||||||||+||||+||++|+|+||+||+||++++|||+++|||
T Consensus 161 m~l~LvEPLR~LfKDEVR~lG~~LGlP~ei~~R~PFPGPGLAvRv~GEVt~e~l~i~R~AD~Iv~EE~~~~gL~~~~WQa 240 (319)
T TIGR00884 161 MKLKLVEPLRELFKDEVRKLGKELGLPEEIVWRHPFPGPGLAVRVLGEVTKEKLEILREADAIVREELKKAGLYDKLWQA 240 (319)
T ss_pred CEEEEECCCHHCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCEE
T ss_conf 60258754023021789999987188679964783686962278861667799999763060488999862788885256
Q ss_pred HEEECC-CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 045568-632421599854144799963216877558710189899998755750487981257860894179766689
Q gi|254780414|r 443 FTVLLP-VQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 (520)
Q Consensus 443 ~avllp-~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~ydit~Kpp~tiewE 520 (520)
|||||| |||||||||.|+|+|+|+||+|+|.|||||+|+++||++|++||+||||||++|||||||||||||||||||
T Consensus 241 FaVLl~~v~svGV~GD~R~Y~~~i~lR~V~S~DgMTA~~~~~Pyd~L~ris~RItnEv~~V~RVVYDITsKPPaTIEwE 319 (319)
T TIGR00884 241 FAVLLPSVKSVGVMGDVRTYGYVIALRAVESIDGMTADWARLPYDLLERISNRITNEVPGVNRVVYDITSKPPATIEWE 319 (319)
T ss_pred EEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 4778488017665278540177889987615266636765389889988821100122884079985167349753359
No 4
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=1110.14 Aligned_cols=315 Identities=63% Similarity=1.042 Sum_probs=311.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 11406789999999976504440366405640477999999862236569999738955156278999988623698579
Q gi|254780414|r 202 NWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLR 281 (520)
Q Consensus 202 ~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~ 281 (520)
+|+|++|+++++++||++|||+||||||||||||||+|+|+||||||||+|||||||||||||.++|+++|..++++|++
T Consensus 1 ~w~~~~~ie~~i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~ 80 (315)
T COG0519 1 MWTMENFIEEAIEEIREQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLI 80 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 98878989999999999728853999833878089999999997405248999637743478569999998753298459
Q ss_pred EEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHH
Q ss_conf 97588999999668988899998875658999999997439970998646220245420246777630344302320113
Q gi|254780414|r 282 VVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPE 361 (520)
Q Consensus 282 ~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~ 361 (520)
+|||+++||++|+||+|||+||||||++||+|||++|++++ ++||+|||||||||||+ +|++.+|||||||||||+
T Consensus 81 ~VdA~~~Fl~~L~GvtDPE~KRKiIG~~Fi~VFe~ea~k~~-~~~LaQGTiYpDvIES~---~g~~~~IKSHHNVGGLP~ 156 (315)
T COG0519 81 VVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKLG-AEFLAQGTIYPDVIESG---TGKAGTIKSHHNVGGLPE 156 (315)
T ss_pred EECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEECCCCCCEEEEC---CCCCCCCCCCCCCCCCCC
T ss_conf 97549889988439998899899987999999999998578-60687044345046506---888886213562688950
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 20320223789873899999999819998894268889831112210003678999999999999999986465333220
Q gi|254780414|r 362 HMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQ 441 (520)
Q Consensus 362 ~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q 441 (520)
+|+|||+||||+|||||||+||++||||++++||||||||||||||+||||+||++|||+||+||++||.++|||+++||
T Consensus 157 ~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ekl~ilR~Ad~I~~eEl~~agly~~~wQ 236 (315)
T COG0519 157 DMKLKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKLEILREADAIVEEELRKAGLYDKIWQ 236 (315)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 14222307789886899999999859988884048999998678962544799999998876999999986475201467
Q ss_pred HHEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 1045568632421599854144799963216877558710189899998755750487981257860894179766689
Q gi|254780414|r 442 AFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 (520)
Q Consensus 442 ~~avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~ydit~Kpp~tiewE 520 (520)
|||||||+||||||||.|||+|+++||||+|.|||||+|+++||++|+++|+||+|||++|||||||||||||||||||
T Consensus 237 aFavll~vksvGV~GD~RtY~~~valRaV~s~D~MTa~~~~lp~~~L~~is~RI~nEv~~V~RVvYDItsKPPaTIEwE 315 (315)
T COG0519 237 AFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPYDVLEKISNRITNEVPGVNRVVYDITSKPPATIEWE 315 (315)
T ss_pred HHHHCCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 7762015411112477755574489998842444314665388999999987763217886368854799899785579
No 5
>PRK00919 GMP synthase subunit B; Validated
Probab=100.00 E-value=0 Score=1079.54 Aligned_cols=305 Identities=54% Similarity=0.857 Sum_probs=299.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 40678999999997650444036640564047799999986223656999973895515627899998862369857997
Q gi|254780414|r 204 VMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283 (520)
Q Consensus 204 ~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~v 283 (520)
+|++|++++|++||++||++||||||||||||||||+|+|||||+||+||||||||||+||+++|++.|++ ++|+++|
T Consensus 2 n~~~fi~~~i~~Ir~~Vg~~kvi~~lSGGVDStV~A~Ll~kAig~~l~~v~VD~GllR~~E~~~V~~~~~~--~~~l~~v 79 (306)
T PRK00919 2 DPEKFIEEAIEEIREEVGDGKAIIALSGGVDSSVAAVLAHRAIGDRLLAVYVDTGLMRKGETERIREIFKD--GLNLRIV 79 (306)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHH--CCCCEEE
T ss_conf 87999999999999984898599991688479999999998864265999986898879869999999983--5892898
Q ss_pred EHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 58899999966898889999887565899999999743997099864622024542024677763034430232011320
Q gi|254780414|r 284 DASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHM 363 (520)
Q Consensus 284 da~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~ 363 (520)
||+++||++|+||+|||+||||||++||+||+++++++ +++||||||||||+|||++ +|||||||||||++|
T Consensus 80 da~~~Fl~~L~gv~DPE~KRKiIG~~Fi~vfe~~~~~~-~~~~LaQGTlyPDvIES~~-------~IKSHHNVggLp~~m 151 (306)
T PRK00919 80 DASDRFLEALKGVTDPEEKRKIIGETFIRVFEEVAKEI-GAEYLVQGTIAPDWIESEG-------GIKSHHNVGGLPEGM 151 (306)
T ss_pred EHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHH-CCCEEEECEECCCHHHCCC-------CCCCCCCCCCCHHHC
T ss_conf 34999999737998956746025799999999999982-9876851107376020467-------643416688773323
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 32022378987389999999981999889426888983111221000367899999999999999998646533322010
Q gi|254780414|r 364 DMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAF 443 (520)
Q Consensus 364 ~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q~~ 443 (520)
++||+||||+|||||||+||++||||+++++|||||||||||||+|++|+||++++|+||+|++++++++++ ++||||
T Consensus 152 ~~kliEPLr~LfKDEVR~lG~~LGlp~~iv~RhPFPGPGLaiRilGevt~ekl~ilr~ad~I~~~el~~~~l--~~wQ~f 229 (306)
T PRK00919 152 VLKIVEPLRDLYKDEVREVARALGLPEEISERMPFPGPGLAVRILGEVTPEKLAIVREANAIVEEEIEKAGL--KPWQYF 229 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--HHHHCC
T ss_conf 563103189985599999999969788870458999963444203667615789999987999999997471--332141
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 45568632421599854144799963216877558710189899998755750487981257860894179766689
Q gi|254780414|r 444 TVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 (520)
Q Consensus 444 avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~ydit~Kpp~tiewE 520 (520)
|+|||+||||||||+|||+|+|+||||+|.|||||+|+++||++|+++|+||+|+|++|||||||||||||||||||
T Consensus 230 avllpvksVGV~GD~RtY~y~valRaV~S~D~MTA~~~~~p~~~L~~is~rI~nev~~VnRVvYDitsKPPaTIEwE 306 (306)
T PRK00919 230 AALLGVKATGVKGDIRAYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRITSEIPEVARVVYDITPKPPATIEFE 306 (306)
T ss_pred EEECCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 89707746415799555465699998606775417776799999999999961507985569887899899683479
No 6
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=100.00 E-value=0 Score=1060.08 Aligned_cols=295 Identities=65% Similarity=1.034 Sum_probs=291.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 03664056404779999998622365699997389551562789999886236985799758899999966898889999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKR 303 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KR 303 (520)
||+|||||||||||||+|+|||||+||+|||||||||||||+++|++.|++++++|++++||+++||++|+|++|||+||
T Consensus 1 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVDnGlmRk~E~e~V~~~~~~~~~~~~~~vdas~~Fl~~L~gv~DPE~KR 80 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERFLSALKGVTDPEEKR 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHHHH
T ss_conf 98999057828999999999886505699998589788882999999998706997799566999999865877925636
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88756589999999974399709986462202454202467776303443023201132032022378987389999999
Q gi|254780414|r 304 KVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLG 383 (520)
Q Consensus 304 kiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~lg 383 (520)
||||++||+||+++++++++++||||||||||+|||++. .++|++|||||||||||++|+++|+||||+|||||||+||
T Consensus 81 KiIG~~Fi~vf~~~~~~~~~~~~L~QGTlyPDvIES~~~-~~~a~~IKsHHNvggLp~~~~~kliEPLr~LfKDEVR~lG 159 (295)
T cd01997 81 KIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSG-KGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVRELG 159 (295)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCCC-CCCCCEEEEECCCCCCCHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 565389999999999755886189724302625750788-8887514522456777232265400167887459999999
Q ss_pred HHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCCCCCCCCCCCCC
Q ss_conf 98199988942688898311122100036789999999999999999864653332201045568632421599854144
Q gi|254780414|r 384 KELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEY 463 (520)
Q Consensus 384 ~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q~~avllp~~svGv~GD~R~y~~ 463 (520)
++||||+++++|||||||||||||+||+|+||++++|+||+||+++++++++|+++|||||+|||+||||||||+|||+|
T Consensus 160 ~~LGlp~~iv~RhPFPGPGLaiRilgevt~ek~~ilr~ad~i~~~el~~~~ly~~~~Q~favllpvksVGV~GD~RtY~~ 239 (295)
T cd01997 160 RELGLPEEIVERHPFPGPGLAVRILGEVTEEKLEILREADAIVEEELEKAGLYDKIWQAFAVLLPIKSVGVMGDQRTYGY 239 (295)
T ss_pred HHHCCCHHHEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEECCCCCCCCC
T ss_conf 98689788822079999870354046688899999999999999999971044660003179837704424798655577
Q ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 79996321687755871018989999875575048798125786089417976668
Q gi|254780414|r 464 VCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEW 519 (520)
Q Consensus 464 ~~~lr~v~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~ydit~Kpp~tiew 519 (520)
+|+||+|+|.|||||+|+++||++|++||+||+|||+|||||+|||||||||||||
T Consensus 240 ~valR~v~s~D~MTA~~~~~p~~~L~~is~rI~nev~gI~RVvYDiTsKPPaTIEw 295 (295)
T cd01997 240 VVALRAVESSDFMTADWARLPYEVLEKISNRITNEVPGVNRVVYDITSKPPATIEW 295 (295)
T ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCC
T ss_conf 48999784477732266679999999999999873898017997389988988889
No 7
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739 The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , . ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=100.00 E-value=0 Score=622.92 Aligned_cols=191 Identities=46% Similarity=0.853 Sum_probs=185.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHH
Q ss_conf 99998897057889988886594069852898988997239979999853889999999753768980899889977899
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQ 89 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~ 89 (520)
||||||||||+|||||||||+||||||+|+++++++|++.+|+||||||||+|||++|+|++++.||++|+|||||||||
T Consensus 1 ILvlDFGsQY~hLIaRRlRE~gVysE~~p~t~~~eeI~~~~P~GiILSGGP~sv~~~n~~~~~~~if~LgVPvLGICYG~ 80 (195)
T TIGR00888 1 ILVLDFGSQYNHLIARRLRELGVYSEIVPNTTPLEEIKEKNPKGIILSGGPASVYAENAPEADEKIFELGVPVLGICYGM 80 (195)
T ss_pred CEEEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEHHH
T ss_conf 97883376510001122010141357840778779986129867997278876467885022488862799688762457
Q ss_pred HHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCC---CCCCEEEEEECCCHHHCCCCCCCEEECCCC-CCEEEEEE
Q ss_conf 99899709699986986610366752388622278726---655336860022011012444211232398-31788986
Q gi|254780414|r 90 QIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE---KGSKQQVWMSHGDQVEHIPEGFEVIASSDS-TPFAFIAD 165 (520)
Q Consensus 90 QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~---~~~~~~VwmSH~D~V~~lP~gf~viA~S~~-~~iaai~~ 165 (520)
|+||++|||+|.+++.+|||++.+++.+++.||+|+++ ....+.|||||+|.|.++|+||+++|+|++ ||+|||+|
T Consensus 81 Ql~A~~lGG~V~~~~~~EYG~a~l~i~~~~~LF~glp~~LTA~P~~~VWMSH~D~V~~lP~gF~vlA~s~~hcP~aAm~~ 160 (195)
T TIGR00888 81 QLMAKQLGGEVGRAEKREYGKAELEILDEDDLFEGLPKALTAKPESTVWMSHGDKVKELPEGFKVLATSDNHCPVAAMEH 160 (195)
T ss_pred HHHHHHHCCEEEECCCCCCCEEEEEEECCCHHHHCCCHHHCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCEEEC
T ss_conf 89999829877656888731389998428812307803534688887112346242008699768875289881000004
Q ss_pred CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 35001124652122215202577998755010644
Q gi|254780414|r 166 EKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQ 200 (520)
Q Consensus 166 ~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~ 200 (520)
.+|++|||||||||+||++|.+||+||+++||+|+
T Consensus 161 ~~K~~YGVQFHPEV~Ht~~G~~~L~NF~~~~C~~~ 195 (195)
T TIGR00888 161 EDKPIYGVQFHPEVTHTEYGKELLKNFVKDVCGCE 195 (195)
T ss_pred CCCCEEEEEECCCEEECHHHHHHHHHHHHHHCCCC
T ss_conf 89966666517831215345789998887631589
No 8
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=0 Score=436.92 Aligned_cols=211 Identities=20% Similarity=0.319 Sum_probs=188.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC-HHHH--HHCCCCEEEECCCCCCCCCCCC-CCCCHHHHHCCCCEEE
Q ss_conf 6999988970578899888865940698528989-8899--7239979999853889999999-7537689808998899
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNA-LDYF--KEQNPQAIILSGSPASSLDIDS-PQIPKEILESNIPLLG 84 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~-~e~i--~~~~p~GIILSGGP~SV~d~~a-p~~~~~I~~~~iPILG 84 (520)
|||||||++|||++|+|++|++|++++|+++|.. ..++ ...+++||||||||+|+.+.+. ..+.+.+++.++||||
T Consensus 2 rILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~~~~~dgIILSpGPg~P~~~~~~~~~i~~~~~~~iPILG 81 (221)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAVAAGFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLG 81 (221)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHCCCCCEEE
T ss_conf 79999388933999999998779918999899899889987634899899969999801167248899875325998898
Q ss_pred ECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH--HCCCCCCCEEECCCCCCEEE
Q ss_conf 7789999899709699986986610366752388622278726655336860022011--01244421123239831788
Q gi|254780414|r 85 ICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDSTPFAF 162 (520)
Q Consensus 85 ICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V--~~lP~gf~viA~S~~~~iaa 162 (520)
||||||+||++|||+|.+++.++||++.+....++.+|+|+ +..+.+||+|++.+ +.+|++|+++|+|++++++|
T Consensus 82 IClG~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~gl---~~~~~~~ryHS~~v~~~~lP~~~~v~A~s~~~~ima 158 (221)
T PRK07765 82 VCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTNVGVLQGL---PDPFTATRYHSLTILPETLPAELEVTARTDSGVIMA 158 (221)
T ss_pred EEHHHHHHHHHHCCEEEECCCCCEEEEEEEEECCCCCCCCC---CCCEEEEEEEEEEEEECCCCCCCEEEEECCCCCEEE
T ss_conf 70999999998397898889553656879998998761589---997478874218997615899628999849986865
Q ss_pred EEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HHHHHHCCC
Q ss_conf 9863500112465212221520257799875501064411140678999999-997650444
Q gi|254780414|r 163 IADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVS-RIKEQVGNE 223 (520)
Q Consensus 163 i~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~-~Ir~~vg~~ 223 (520)
++|+++++|||||||||.||++|.+||+||| +||||++||+|.+|++++|. .+++|||..
T Consensus 159 ~~h~~~~i~GVQFHPEs~~T~~G~~ll~NFl-~icg~~~~w~~~~~ie~~i~~~~~~~~~~~ 219 (221)
T PRK07765 159 VRHRELPIHGVQFHPESILTEGGHRMLANWL-TYCGWAPDDTLVRRLENEVAAAVAPATGRT 219 (221)
T ss_pred EEECCCCEEEEEECCCCCCCCCHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 8707897899997885357816699999999-981999887789999999999998750757
No 9
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=419.54 Aligned_cols=191 Identities=39% Similarity=0.701 Sum_probs=179.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCHHHHHCCCC--
Q ss_conf 8869999889705788998888659-406985289898899723997999985388999999--97537689808998--
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESK-VYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID--SPQIPKEILESNIP-- 81 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelg-VyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~--ap~~~~~I~~~~iP-- 81 (520)
..+|+|+||||||+|+|+||+||+| ||||++|++.+.+++.+.+|+||||||||+|||+++ ++..+..|++.++|
T Consensus 1 ~~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~ 80 (198)
T COG0518 1 MRKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGK 80 (198)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 95799995797076799999987398269998578880115666888899858988776443330557899997188888
Q ss_pred -EEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCC
Q ss_conf -89977899998997096999869866103667523-8862227872665533686002201101244421123239831
Q gi|254780414|r 82 -LLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIK-KNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTP 159 (520)
Q Consensus 82 -ILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~-~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~ 159 (520)
|||||||||+||.++||+|+++..+|||++.+++. .++.+|+++++... .|||||+|.|+++|+||+++|+|++|+
T Consensus 81 pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~~~--~v~~sH~D~v~~lP~g~~vlA~s~~cp 158 (198)
T COG0518 81 PVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDLFT--TVFMSHGDTVVELPEGAVVLASSETCP 158 (198)
T ss_pred CEEEECHHHHHHHHHHCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCC--CCCCCHHCCCCCCCCCCEEEECCCCCH
T ss_conf 789987618999998498896468876515999972586500048854337--106613074434899989986589980
Q ss_pred EEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 788986350011246521222152025779987550106441
Q gi|254780414|r 160 FAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQD 201 (520)
Q Consensus 160 iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~ 201 (520)
++||++. +++||+||||||+| +.|.++|+||..++|+|++
T Consensus 159 ~qa~~~~-~~~~gvQFHpEv~~-~~~~~~l~nf~~~i~~~~~ 198 (198)
T COG0518 159 NQAFRYG-KRAYGVQFHPEVTH-EYGEALLENFAHEICGEEP 198 (198)
T ss_pred HHHEECC-CCEEEEEEEEEEEH-HHHHHHHHHHHHHHCCCCC
T ss_conf 4205667-85799942018738-9999999986566405698
No 10
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=0 Score=405.27 Aligned_cols=186 Identities=25% Similarity=0.347 Sum_probs=172.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 69999889705788998888659406985289-89889972399799998538899999997537689808998899778
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
.||||||||||||+|+||+||+|++++++|++ .+++++...+|+||||||||.|+++.+.+....+.+..++|||||||
T Consensus 1 mILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS~GPg~p~~~~~~~~~~~~~~~~iPILGICl 80 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIISPGPGHPRDSGISLDVISSYAPTIPILGVCL 80 (190)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHCCCCEEEECH
T ss_conf 99999788808999999998689989998699899999970797989997999995785761689999714998789739
Q ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH--HCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 9999899709699986986610366752388622278726655336860022011--01244421123239831788986
Q gi|254780414|r 88 GQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDSTPFAFIAD 165 (520)
Q Consensus 88 G~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V--~~lP~gf~viA~S~~~~iaai~~ 165 (520)
|||+||+++||+|.+++.+|||++.+...+.+.+|+|+ +..+.+||+|++.+ .++|++|+++|+|+++.++|++|
T Consensus 81 G~Q~ia~~~Gg~v~~~~~~~~G~~~~i~~~~~~lf~g~---~~~~~~~~~hs~~v~~~~lp~~~~v~a~s~~~~i~ai~h 157 (190)
T CHL00101 81 GHQSIGYVYGGKIIKASKPMHGKTSLIYHNHDDLFQGL---PNPFIATRYHSLIIDRENLPSCLEITAWTEDGLIMACRH 157 (190)
T ss_pred HHHHHHHHCCCEEEECCCEEECCEEEEEECCCCCCCCC---CCCCEEEECCEEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 88999887586499788204362479997898754379---988489870779998045789879999979996899997
Q ss_pred CCCC-EEEEEEEEHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 3500-11246521222152025779987550106
Q gi|254780414|r 166 EKRK-YYAVQFHPEVVHTVGGSQLIDNFVHHVAG 198 (520)
Q Consensus 166 ~~~~-iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~ 198 (520)
++++ +|||||||||+||++|.+||+||+ ++|.
T Consensus 158 ~~~~~i~GVQFHPEs~~T~~G~~il~NFl-~la~ 190 (190)
T CHL00101 158 KKYPMLRGIQFHPESILTEHGQQLLRNFL-SLSS 190 (190)
T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHH-HHCC
T ss_conf 89998799997486699948699999999-8609
No 11
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=0 Score=386.00 Aligned_cols=188 Identities=25% Similarity=0.370 Sum_probs=167.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 699998897057889988886594069852898-9889972399799998538899999997537689808998899778
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN-ALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~-~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
.|||+|+++||||+|+|++|++|+|++|+|++. +++++...+|+||||||||+|+++.+...-.-+.++.++|||||||
T Consensus 1 miLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS~GPg~P~~~~~~~~~i~~~~~~iPiLGICl 80 (192)
T PRK05670 1 MILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCL 80 (192)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHCCCCCEEEEEH
T ss_conf 99999689868999999998689969999899899999985098989999999993660554999997346997899847
Q ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH--HCCCCCCCEEECCCCCCEEEEEE
Q ss_conf 9999899709699986986610366752388622278726655336860022011--01244421123239831788986
Q gi|254780414|r 88 GQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDSTPFAFIAD 165 (520)
Q Consensus 88 G~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V--~~lP~gf~viA~S~~~~iaai~~ 165 (520)
|||+||.++||+|.+++.++||++.....+++.+|+++ +..+.|||+|++.+ ..+|++|+++|+|+++.++|++|
T Consensus 81 G~Qlia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~~~---~~~~~v~~~Hs~~v~~~~lp~~~~v~a~s~d~~i~a~~~ 157 (192)
T PRK05670 81 GHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGKGIFAGL---PNPFTVTRYHSLVVERESLPDCLEVTAWTDDGEIMGVRH 157 (192)
T ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCC---CCCCEEEECCEEEEEECCCCCCEEEEEEECCCCEEEEEE
T ss_conf 78999987197388888636370489998999871588---887468611207999334799679999979971999998
Q ss_pred CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 35001124652122215202577998755010644
Q gi|254780414|r 166 EKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQ 200 (520)
Q Consensus 166 ~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~ 200 (520)
+++++|||||||||.||++|.+||+||+ ++|...
T Consensus 158 ~~~~~~gvQFHPEs~~t~~G~~il~nFl-~~~~g~ 191 (192)
T PRK05670 158 KELPIYGVQFHPESILTEHGHKLLENFL-ELALGA 191 (192)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHH-HHHCCC
T ss_conf 9999899967998899817699999999-975138
No 12
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=0 Score=385.26 Aligned_cols=183 Identities=25% Similarity=0.364 Sum_probs=169.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 69999889705788998888659406985289-89889972399799998538899999997537689808998899778
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
.|||+|+++|||++|+|++||+|+|++|+|++ .+++++.+.+|+||||||||.|+++.+.+....+.+..++|||||||
T Consensus 1 miLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~IilS~GPg~p~~~~~~~~~~~~~~~~iPILGICl 80 (192)
T PRK08857 1 MLLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCL 80 (192)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHCCCCCEEEECH
T ss_conf 99999799977999999998779928999699899999984297959998999996782861466997357999899879
Q ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCCCC-----CE
Q ss_conf 99998997096999869866103667523886222787266553368600220110--124442112323983-----17
Q gi|254780414|r 88 GQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDST-----PF 160 (520)
Q Consensus 88 G~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~~~-----~i 160 (520)
|||+||+++||+|.+++.++||++......++.+|+++ +..+.|||+|++.|. ++|++|+++|.++++ .+
T Consensus 81 G~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~~~---~~~~~v~~~Hs~~v~~~~lp~~~~v~a~t~~~~~~~~~i 157 (192)
T PRK08857 81 GHQAIAQVFGGDVVRARQVMHGKTSPIRHTGRSVFKGL---NNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEI 157 (192)
T ss_pred HHHHHHHHHCCEEEECCCCEEEEEEEEEECCCEEEECC---CCCEEEEECCCEEEECCCCCCCEEEEEEEECCCCCCCCE
T ss_conf 99999998398299888432511579998993047369---988798962552789574899829999972688997705
Q ss_pred EEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf 8898635001124652122215202577998755
Q gi|254780414|r 161 AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 161 aai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
+|++|+++++|||||||||.||++|.+||+|||-
T Consensus 158 ~a~~h~~~~i~GVQFHPEs~~T~~G~~il~NFl~ 191 (192)
T PRK08857 158 MGFQHKTLPIEAVQFHPESIKTEQGHQLLANFLA 191 (192)
T ss_pred EEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf 3888389998999877977998474899999726
No 13
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=0 Score=384.47 Aligned_cols=182 Identities=25% Similarity=0.438 Sum_probs=159.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH--HHHHCCCCEE
Q ss_conf 88699998897057889988886594069852898-98899723997999985388999999975376--8980899889
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN-ALDYFKEQNPQAIILSGSPASSLDIDSPQIPK--EILESNIPLL 83 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~-~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~--~I~~~~iPIL 83 (520)
..||||+|||+||||+|+|++||+|+||+|++++. +.+++ .+++||||||||+++.+. +.... ..+..++|||
T Consensus 2 ~~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~--~~~~~IIlSpGPg~p~~~--~~~~~~i~~~~~~~PIL 77 (191)
T PRK06895 2 ATNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEV--ENFSHILISPGPDVPRAY--PQLFAMLERYYQQKSIL 77 (191)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHH--HCCCEEEEECCCCCCCCC--CHHHHHHHHHCCCCCEE
T ss_conf 98699996988489999999987799699984784899898--558969990899980105--22499999860689878
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEE-EEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCCCCCE
Q ss_conf 97789999899709699986986610366-7523886222787266553368600220110--12444211232398317
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAF-IEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDSTPF 160 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~-I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~~~~i 160 (520)
|||||||+||++|||+|.+++..+||.+. +...+++.+|+++ +..++|||+|++.|. .+|++|+++|+++++.+
T Consensus 78 GIClG~Q~i~~~~Gg~v~~~~~~~hG~~~~i~~~~~~~lf~g~---~~~~~v~~yHs~~v~~~~lp~~~~v~a~~~~~~i 154 (191)
T PRK06895 78 GVCLGHQTLCEFFGGTLYNLENVRHGQQRTLKVRSNSPLFDGL---PEEFNIGLYHSWAVSQENFPTPLEITAVCDEEVV 154 (191)
T ss_pred EECHHHHHHHHHHCCEEEECCCCEEEEEEEEEECCCCCCCCCC---CCCEEEEEEEEEEEECCCCCCCEEEEEECCCCEE
T ss_conf 9829999999982957996887455227899991898346589---9974876667778760578974699997599809
Q ss_pred EEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 889863500112465212221520257799875501
Q gi|254780414|r 161 AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 161 aai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
+|++|+++++|||||||||.||++|.+||+||| +|
T Consensus 155 ~a~~h~~~~i~GvQFHPEs~~T~~G~~il~NFl-~i 189 (191)
T PRK06895 155 MAFQHKHLPIYGVQFHPESYISEFGEQILRNWL-AI 189 (191)
T ss_pred EEEEECCCCEEEEEECCCCCCCCCHHHHHHHHH-CC
T ss_conf 988848998999982884688878599999986-56
No 14
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=0 Score=378.48 Aligned_cols=181 Identities=28% Similarity=0.419 Sum_probs=164.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHH
Q ss_conf 9999889705788998888659406985289-898899723997999985388999999975376898089988997789
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG 88 (520)
|||+|||+||||+|+|++|++|+||+|+|++ .+.+.++..+|+||||||||.|+++.+.+....+.++.++||||||||
T Consensus 1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~~~~~~~~l~~~iPiLGIC~G 80 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLG 80 (184)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 89993798179999999986799599998999999999732979999999998925614609999998469989998099
Q ss_pred HHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCCCCCEEEEEEC
Q ss_conf 9998997096999869866103667523886222787266553368600220110--12444211232398317889863
Q gi|254780414|r 89 QQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDSTPFAFIADE 166 (520)
Q Consensus 89 ~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~~~~iaai~~~ 166 (520)
||+||.++||+|.+.+.+++|........++.+|.++ +....|||+|++++. .+|+++.++|+++++.++|++|+
T Consensus 81 ~Qll~~~~Gg~v~~~~~~~~G~~~~i~~~~~~~~~~~---~~~~~v~~~Hs~~~~~~~~~~~~~~~a~~~~~~i~ai~~~ 157 (184)
T cd01743 81 HQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSGLFKGL---PQPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHR 157 (184)
T ss_pred HHHHHHHCCCEEEECCCCEECEEEEEEECCCCCEECC---CCCCEEEEEEEEEEECCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 9999998398487457514054589997797636427---8888898861468981357875079998899849999989
Q ss_pred CCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 500112465212221520257799875
Q gi|254780414|r 167 KRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 167 ~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
++++|||||||||.||++|.+||+||+
T Consensus 158 ~~~i~GvQFHPEs~~t~~G~~il~nFl 184 (184)
T cd01743 158 DLPIYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHC
T ss_conf 999899983687689827389998439
No 15
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=0 Score=375.81 Aligned_cols=190 Identities=21% Similarity=0.324 Sum_probs=174.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 69999889705788998888659406985289-89889972399799998538899999997537689808998899778
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
.|||+|+++|||++|+|++|++|++++|+++| .+++++.+.+|+||||||||.++++.+.+....+.++.++|||||||
T Consensus 1 MILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~~~~~~~~~~~~iPILGICl 80 (195)
T PRK07649 1 MILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHCCCCCEEEECH
T ss_conf 99999589807999999999789979998899689999984198989988999995784761467997528997843029
Q ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHC--CCCCCCEEECCCCCCEEEEEE
Q ss_conf 999989970969998698661036675238862227872665533686002201101--244421123239831788986
Q gi|254780414|r 88 GQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH--IPEGFEVIASSDSTPFAFIAD 165 (520)
Q Consensus 88 G~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~--lP~gf~viA~S~~~~iaai~~ 165 (520)
|||+||.++||+|.+++.++||++.....+.+.+|+++ +..+.|||+|++.|.. +|++|+++|+|+++.++||+|
T Consensus 81 G~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~g~---~~~~~v~~yHs~~v~~~~lp~~~~v~a~s~~~~i~ai~h 157 (195)
T PRK07649 81 GHQSIAQVFGGEVVRAERLMHGKTSLMHHDGKTIFSDI---PNPFTATRYHSLIVKKETLPDCFEVTAWTEEGEIMAIRH 157 (195)
T ss_pred HHHHHHHHCCCCEEECCCEEECEEEEEEECCCCCCCCC---CCCEEEEECCCEEEEECCCCCCEEEEEECCCCCEEEEEE
T ss_conf 99999987397283379607640657998897634388---887589861615896235787428999948997899993
Q ss_pred CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 350011246521222152025779987550106441
Q gi|254780414|r 166 EKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQD 201 (520)
Q Consensus 166 ~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~ 201 (520)
+++++|||||||||.||++|.+||+|||.++++-..
T Consensus 158 ~~~pi~GVQFHPEs~~T~~G~~il~NFl~k~~~~~~ 193 (195)
T PRK07649 158 KTLPIEGVQFHPESIMTSHGKELLQNFIRKYSPSVT 193 (195)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 899889998689888997768999999986135756
No 16
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=0 Score=376.59 Aligned_cols=182 Identities=35% Similarity=0.685 Sum_probs=169.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHH
Q ss_conf 69999889705788998888659406985289898899723997999985388999999975376898089988997789
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG 88 (520)
||||||||+|||++|+|++|++|++++|+|+++++++++. +|+||||||||.+.. +....+.+.+.++||||||||
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~i~~-~~dgiilS~GP~~~~---~~~~~~~i~~~~iPiLGIClG 76 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEEIKA-EPDGIILSGGPEIER---AGNCEEYLLELDVPILGICLG 76 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH-CCCEEEECCCCCCCC---CCCHHHHHHHCCCCEEEEEHH
T ss_conf 9999989863899999999978992899959898999963-899899889998333---220699998659988997177
Q ss_pred HHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEEEECCC
Q ss_conf 99989970969998698661036675238862227872665533686002201101244421123239831788986350
Q gi|254780414|r 89 QQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKR 168 (520)
Q Consensus 89 ~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~~~~~ 168 (520)
||+||.++||+|.+++.+++|+..+.+.+.+.+|+++ +..+.+|++|+|.|.++|++|+++|+|+++.++|++|+++
T Consensus 77 ~Q~l~~~~Gg~v~~~~~~~~G~~~i~~~~~~~lf~~~---~~~~~v~~~H~~~v~~~p~~~~v~a~s~~~~v~~i~~~~~ 153 (184)
T PRK00758 77 HQLIAKAFGGEVGRAEKGEYALVEVEILDEDDILRGL---PPEITVWASHADEVKELPDGFEILARSDICEVEAMKHKDK 153 (184)
T ss_pred HHHHHHHCCCCCCCCCCEEECCEEEEEECCCCCCCCC---CCCCEEEEEEEEEEEECCCCEEEEEECCCCCEEEEEECCC
T ss_conf 6665876699330276215433689997388751115---8863787640058996587159999849998899998999
Q ss_pred CEEEEEEEEHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 011246521222152025779987550106
Q gi|254780414|r 169 KYYAVQFHPEVVHTVGGSQLIDNFVHHVAG 198 (520)
Q Consensus 169 ~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~ 198 (520)
++||||||||+.+|++|.+||+||+ +|||
T Consensus 154 ~i~gvQFHPEs~~t~~G~~ll~nFl-~icg 182 (184)
T PRK00758 154 PIYGVQFHPEVSHTEKGEEIFKNFI-KICG 182 (184)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHH-HHHC
T ss_conf 9999991884799927899999999-9855
No 17
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=0 Score=368.71 Aligned_cols=183 Identities=27% Similarity=0.371 Sum_probs=168.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 69999889705788998888659406985289-89889972399799998538899999997537689808998899778
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
.|||+|+++|||++|+|++|++|++++|+|+| .++++++..+|+||||||||.++.+.+.+......++.++|||||||
T Consensus 1 MILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~IvlSpGPg~P~~~~~~~~~i~~~~~~iPiLGICl 80 (187)
T PRK08007 1 MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHCCCCCEEEECH
T ss_conf 99999689818999999998779979999389899999984298979999999995890840468997538998899879
Q ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCCCCCEEEEEE
Q ss_conf 99998997096999869866103667523886222787266553368600220110--1244421123239831788986
Q gi|254780414|r 88 GQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDSTPFAFIAD 165 (520)
Q Consensus 88 G~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~~~~iaai~~ 165 (520)
|||+||+++||+|.+++.++||++.......+.+|+++ +..+.|||+|++.|. ++|++|+++|+|++++++|++|
T Consensus 81 G~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~~~---~~~~~v~~~hs~~v~~~~lp~~~~v~a~~~~~~v~ai~~ 157 (187)
T PRK08007 81 GHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGL---ANPLTVTRYHSLVVEPDSLPECFEVTAWSETREIMGIRH 157 (187)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCCCCC---CCCEEEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 99999998098073478320152069998998626789---987378975578886476898159999929986899998
Q ss_pred CCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf 35001124652122215202577998755
Q gi|254780414|r 166 EKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 166 ~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
+++++|||||||||.||++|.+||+|||.
T Consensus 158 ~~~~~~GVQFHPEs~~T~~G~~il~NFl~ 186 (187)
T PRK08007 158 RQWDLEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHC
T ss_conf 99998999958977999677899999857
No 18
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=0 Score=367.34 Aligned_cols=181 Identities=52% Similarity=0.935 Sum_probs=175.1
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHH
Q ss_conf 99998897057889988886594069852898988997239979999853889999999753768980899889977899
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQ 89 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~ 89 (520)
|+|+|||++++|+|+|.+|++|+.++|+|++++.++++..+|+||||||||.|+.+.+++...+++++.++|+||||+||
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~~~~~~~~~~dgvils~GP~~~~~~~~~~~~~~i~~~~~PilGIClG~ 80 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCEEEEHHHH
T ss_conf 79999986389999999997799499996999989997349898998999998555798333099984799999985999
Q ss_pred HHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEEEECCCC
Q ss_conf 99899709699986986610366752388622278726655336860022011012444211232398317889863500
Q gi|254780414|r 90 QIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRK 169 (520)
Q Consensus 90 QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~~~~~~ 169 (520)
|+||.++||+|.+...+++|+..+.+..++++|+++ .....+|++|+|+|.++|++++++|+|++++++|+++++++
T Consensus 81 Qll~~a~Gg~v~~~~~~~~G~~~~~~~~~~~l~~~~---~~~~~~~~~H~~~v~~~p~~~~~~a~s~~~~v~~~~~~~~~ 157 (181)
T cd01742 81 QLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGL---PDEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKK 157 (181)
T ss_pred HHHHHHCCCCEEECCCCEECCEEEEEECCCCCCCCC---CCCEEEEEECCEEEEECCCCEEEEEECCCCEEEEEEECCCC
T ss_conf 999987597602189855364478981262100588---98567885636299845873079999599409999989999
Q ss_pred EEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 112465212221520257799875
Q gi|254780414|r 170 YYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 170 iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
+||+|||||+++|+.|.+||+|||
T Consensus 158 i~gvQfHPEs~~s~~G~~il~NFl 181 (181)
T cd01742 158 IYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHC
T ss_conf 899995788899847379998429
No 19
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=0 Score=358.69 Aligned_cols=184 Identities=22% Similarity=0.338 Sum_probs=166.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 69999889705788998888659406985289-89889972399799998538899999997537689808998899778
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
.|||+|+++|||++|+|++|++|++++|+++| .+++++...+|+|||||+||.++.+.+.+......+..++|||||||
T Consensus 1 mILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~ivLSpGPG~P~~~~~~~~~i~~~~~~iPILGICl 80 (191)
T PRK06774 1 MLLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHVVISPGPCTPNEAGISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHCCCCCEEEEHH
T ss_conf 99999699976999999998779959998699889999985399969999999896790730689997446997886168
Q ss_pred HHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH--HCCCCCCCEEECCCCC----CEE
Q ss_conf 9999899709699986986610366752388622278726655336860022011--0124442112323983----178
Q gi|254780414|r 88 GQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDST----PFA 161 (520)
Q Consensus 88 G~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V--~~lP~gf~viA~S~~~----~ia 161 (520)
|||+||+++||+|.+++.++||++......++.+|+|+ +..+.|||+|++.+ .++|++|+++|.|+++ .++
T Consensus 81 G~Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~~~~lf~g~---~~~~~v~~~Hs~~v~~~~lp~~~~v~a~s~~~~~~~~i~ 157 (191)
T PRK06774 81 GHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGL---NQPLTVTRYHSLVIATDSLPGCFELTAWTERGGEMDEIM 157 (191)
T ss_pred HHHHHHHHCCCEEEECCCCEECEEEEEEECCCCCCCCC---CCCCEEEECCCEEEEECCCCCCEEEEEEECCCCCCCEEE
T ss_conf 79998656098492899747570368998998760689---998688504650788344899879999979999988688
Q ss_pred EEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHH
Q ss_conf 8986350011246521222152025779987550
Q gi|254780414|r 162 FIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHH 195 (520)
Q Consensus 162 ai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~ 195 (520)
|++|+++++|||||||||.||++|.+||+|||.+
T Consensus 158 ai~~~~~~i~GVQFHPEs~~T~~G~~il~NFl~~ 191 (191)
T PRK06774 158 GIRHRTLPLEGVQFHPESILSEQGHQLLDNFLKN 191 (191)
T ss_pred EEEECCCCEEEEEECCCCCCCCCHHHHHHHHHCC
T ss_conf 8883899989987689889995888999998449
No 20
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=100.00 E-value=0 Score=361.95 Aligned_cols=173 Identities=25% Similarity=0.445 Sum_probs=146.5
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCHHHHHCCCCEEEECHH
Q ss_conf 999988970578899888865940698528989889972399799998538899999-9975376898089988997789
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~~~iPILGICyG 88 (520)
|+||||||||| |+||+||+|+||+|+|+++++++++..+|+||||||||+|+++. .++...+++++.++||||||||
T Consensus 1 i~ilDfGsqy~--i~r~lrelg~~~~v~~~~~~~~~i~~~~p~giIlS~GPg~p~~~~~~~~~~~~~~~~~iPILGIClG 78 (178)
T cd01744 1 VVVIDFGVKHN--ILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLG 78 (178)
T ss_pred CEEEECCCHHH--HHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHCCCCEEEECHH
T ss_conf 99998874999--9999998799799993989999998419997998999999577344499999997469988998121
Q ss_pred HHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCC-CCCEEEEEE
Q ss_conf 9998997096999869866103667523886222787266553368600220110--1244421123239-831788986
Q gi|254780414|r 89 QQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSD-STPFAFIAD 165 (520)
Q Consensus 89 ~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~-~~~iaai~~ 165 (520)
||+||+++||+|.+.+.+++|.. .++.... .......||+|+|.|. ++|++|+++|.|. ++.+||++|
T Consensus 79 ~Q~ia~~~Gg~v~k~~~g~~G~n-------~pv~~~~--~~~~~~~~~~H~~~v~~~~lp~~~~v~a~s~~d~~i~ai~h 149 (178)
T cd01744 79 HQLLALALGAKTYKMKFGHRGSN-------HPVKDLI--TGRVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTVEGIRH 149 (178)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCC-------CCCEECC--CCCEEEEECCCCEEEEECCCCCCCEEEEECCCCCCEEEEEE
T ss_conf 78899881983001566724787-------1216768--88388864475548762458998579996489985799998
Q ss_pred CCCCEEEEEEEEHHHCCCH-HHHHHHHHH
Q ss_conf 3500112465212221520-257799875
Q gi|254780414|r 166 EKRKYYAVQFHPEVVHTVG-GSQLIDNFV 193 (520)
Q Consensus 166 ~~~~iyGVQFHPEV~hT~~-G~~iL~NFl 193 (520)
+++++||||||||+.+|++ |..|++||+
T Consensus 150 ~~~~i~GVQFHPEs~~~~~~~~~if~nFl 178 (178)
T cd01744 150 KDLPVFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHC
T ss_conf 99999999859979999977489897239
No 21
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.4e-43 Score=326.94 Aligned_cols=352 Identities=18% Similarity=0.250 Sum_probs=229.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCC----CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 8699998897057889988886594069852898----988997239979999853889999999753768980899889
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN----ALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~----~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
.+||++|.=-.||..|+..+|+++....|+..+. .++++...+|++||||+||+++.|.+...-.-..+..++|||
T Consensus 2 ~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~~~~ii~~~~~~iPIL 81 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPII 81 (531)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCCHHHHHHHHCCCCCEE
T ss_conf 70999828886288999999866995699969983130199997249596998999989023657399999865999989
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEE
Q ss_conf 97789999899709699986986610366752388622278726655336860022011012444211232398317889
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFI 163 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai 163 (520)
|||||||+|+++|||+|.+++..+||++.....+.+.+|+|+ +..+.|||||++.++.+|++|+++|+++ +.++|+
T Consensus 82 GICLGhQ~ia~~~Gg~v~~a~~~~HGk~s~i~~~~~~lF~gl---p~~~~v~rYHSl~~~~lP~~l~v~A~~~-g~iMai 157 (531)
T PRK09522 82 GICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGL---TNPLPVARYHSLVGSNIPAGLTINAHFN-GMVMAV 157 (531)
T ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCCCCC---CCCCEEEEECEECCCCCCCCEEEEEEEC-CEEEEE
T ss_conf 987877899997298896779843233656798985202899---9997799644330447999879997169-999999
Q ss_pred EECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 86350011246521222152025779987550106441114067899999999765044403664056404779999998
Q gi|254780414|r 164 ADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIY 243 (520)
Q Consensus 164 ~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~ 243 (520)
+|+++|+||||||||+.||++|.+||+||| +.|.-+.. .+..++.| |+
T Consensus 158 ~h~~~pi~GVQFHPESi~T~~G~~il~NFL-n~~~~~~~------~~~~~k~~-------------------------l~ 205 (531)
T PRK09522 158 RHDADRVCGFQFHPESILTTQGARLLEQTL-AWAQQKLE------PTNTLQPI-------------------------LE 205 (531)
T ss_pred EECCCCEEEEEECCCCCCCCCHHHHHHHHH-CCCCCCCC------CCCCHHHH-------------------------HH
T ss_conf 989998699820875468877799999985-65434355------44408999-------------------------99
Q ss_pred HHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH-HHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 622-3656999973895515627899998862369857997588-99999--9668988899998875658999999997
Q gi|254780414|r 244 EAI-GINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDAS-ERFIR--KLKNIVDPETKRKVIGQLFIEVFEEEAK 319 (520)
Q Consensus 244 kAi-g~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~-~~Fl~--~L~gv~DPE~KRkiIG~~Fi~vf~~~a~ 319 (520)
|.. |.+ |-..|++++++..-+- +.. +|+ .-||- +.||.|--| |.| |.+++-+.+.
T Consensus 206 kl~~g~~----------Lt~~ea~~~m~~im~G---~~t--~~qi~a~L~~lr~kGEt~~E----i~g--~a~amr~~a~ 264 (531)
T PRK09522 206 KLYQAQT----------LSQQESHQLFSAVVRG---ELK--PEQLAAALVSMKIRGEHPNE----IAG--AATALLENAA 264 (531)
T ss_pred HHHCCCC----------CCHHHHHHHHHHHHCC---CCC--HHHHHHHHHHHHHCCCCHHH----HHH--HHHHHHHHCC
T ss_conf 9866999----------9999999999999689---999--99999999999852898999----999--9999998486
Q ss_pred HCCCCE--E-EEECC-------CC----CHHHHHHCCCCCCCCEEEEEECCC-----C---HHHHHCCCH----------
Q ss_conf 439970--9-98646-------22----024542024677763034430232-----0---113203202----------
Q gi|254780414|r 320 KIGGAQ--F-LGQGT-------LY----PDVIESISFFGGPSSIIKSHHNVG-----G---LPEHMDMKL---------- 367 (520)
Q Consensus 320 ~~~~~~--~-L~QGT-------ly----pDvIES~~~~~~~~~~IKsHHNvg-----g---lp~~~~~~l---------- 367 (520)
++.... + =-=|| +- .-++=++. -..+--|-|.+ | +-+.+..++
T Consensus 265 ~~~~~~~~~iD~~GTGGDg~~tfNiST~aa~v~Aa~-----Gv~VaKHGNrs~sSksGSADvLealGv~i~~~~~~~~~~ 339 (531)
T PRK09522 265 PFPRPDYLFADIVGTGGDGSNSINISTASAFVAAAC-----GLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQA 339 (531)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC-----CCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 168899870232567998888724789999999739-----986760589877988629999997099988999999999
Q ss_pred HH------HHHHHHHHHHHHHH---HHHCCCHHHHCCCCCCCC-CCEEEECCCCCHHHHHHHHH
Q ss_conf 23------78987389999999---981999889426888983-11122100036789999999
Q gi|254780414|r 368 VE------PLKELFKDEVRLLG---KELRLPDSFVERHPCPGP-GLAIRCIGEITEERINILRE 421 (520)
Q Consensus 368 iE------Pl~~l~KdEVR~lg---~~Lglp~~~~~RhPFPGP-GLaiRi~g~vt~e~~~i~r~ 421 (520)
+| =+...|-.-.|.++ ++||++.-+=-=-|.--| +....++|--.++.++.+-+
T Consensus 340 l~~~gi~FlfAp~~Hpamk~v~pvRk~Lg~rTiFNiLGPL~NPa~~~~qliGV~~~~~~~~~a~ 403 (531)
T PRK09522 340 LDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAE 403 (531)
T ss_pred HHHCCEEEEECHHHCHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 9974915862343366699999999971988512134555788788726980379999999999
No 22
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=100.00 E-value=1.1e-43 Score=332.41 Aligned_cols=182 Identities=34% Similarity=0.531 Sum_probs=159.9
Q ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HCCCCEEEECCCCCCCCCC-CCCCCCHHHHHCCCCEEEECHH
Q ss_conf 9998897057889988886594069852898988997-2399799998538899999-9975376898089988997789
Q gi|254780414|r 11 LIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFK-EQNPQAIILSGSPASSLDI-DSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 11 lIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~-~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~~~iPILGICyG 88 (520)
+|+|||+|||++|+|++|++|++++|+|++.+.+.+. ..+|+||||||||+++.+. ....+.+++++.++||||||+|
T Consensus 1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~~~~PiLGIClG 80 (187)
T pfam00117 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGGAIEAIKELRENKIPILGICLG 80 (187)
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHH
T ss_conf 98937863899999999868997999989998699985259998999199861101345899999999779989999888
Q ss_pred HHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCCC-CCEEEEEE
Q ss_conf 9998997096999869866103667523886222787266553368600220110--12444211232398-31788986
Q gi|254780414|r 89 QQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDS-TPFAFIAD 165 (520)
Q Consensus 89 ~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~~-~~iaai~~ 165 (520)
||+|+.++||+|.+.+..++|+.. .+...+.+|.++ +....+|++|+|.|. .+|++|+++|+|.+ +.++|+++
T Consensus 81 ~Qll~~~~Gg~v~~~~~~~~G~~~-~i~~~~~~~~~~---~~~~~~~~~Hs~~v~~~~lp~~~~i~a~s~~~~~i~a~~~ 156 (187)
T pfam00117 81 HQLLALAFGGKVIKAKEPHHGKNS-PVGHDKGLFYGL---PNVFIVRRYHSYAVDPDTLPDGLEVTAASDNGGEIMAIRH 156 (187)
T ss_pred HHHHHHHCCCCCCCCCEEECCEEE-EECCCHHHHCCC---CCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCEEEEEE
T ss_conf 999999719986443101057048-973211644279---9773777603489986257886299998688871899998
Q ss_pred CCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 3500112465212221520257799875501
Q gi|254780414|r 166 EKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 166 ~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
+++++||||||||+.+|++|.++|+||++++
T Consensus 157 ~~~~~~gvQfHPE~~~t~~G~~ll~nfl~~~ 187 (187)
T pfam00117 157 KENPIFGVQFHPESSLTPGGPELLFNFLIKL 187 (187)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHCCC
T ss_conf 8998999995997799977048998777439
No 23
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=7.7e-40 Score=304.94 Aligned_cols=186 Identities=23% Similarity=0.323 Sum_probs=154.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH--HHHHCCCCEEEE
Q ss_conf 869999889705788998888659406985289898899723997999985388999999975376--898089988997
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPK--EILESNIPLLGI 85 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~--~I~~~~iPILGI 85 (520)
.+||++|+..+||+.|++++|++|++++|++++.+++++.+.+|++||||+||+++.|.+ .... +.+..++|||||
T Consensus 2 ~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn~~~~~~~~~~~pd~ivlSPGPg~P~d~g--~~~~~~~~~~~~iPILGI 79 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVETILAANPDLICLSPGPGYPADAG--NMMALIERTLGQIPLLGI 79 (208)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCEEEECCCCCCHHHCC--CHHHHHHHHHCCCCEEEH
T ss_conf 779999488975999999998679907999699999999851999599999999957775--749999997356982211
Q ss_pred CHHHHHHHHHCCCEEEECCCCCCCEEEE-EECC---CCCCCCCCCCCC---------CCEEEEEECCCHHHCCCCCCCEE
Q ss_conf 7899998997096999869866103667-5238---862227872665---------53368600220110124442112
Q gi|254780414|r 86 CYGQQIMCQSLGGKTKNSQSREFGRAFI-EIKK---NCSLLKGMWEKG---------SKQQVWMSHGDQVEHIPEGFEVI 152 (520)
Q Consensus 86 CyG~QlLa~~~GG~V~~~~~~EyG~~~I-~i~~---~~~lf~gl~~~~---------~~~~VwmSH~D~V~~lP~gf~vi 152 (520)
|||||+||.+|||+|.+.+. .||++.. ..+. .+++|+|++... ....||++|++.+..+|+++..+
T Consensus 80 CLGhQ~i~~~~Gg~v~~~~~-~HG~~s~i~~~~~g~~~~lf~gl~~~~~~~~~~~~~~~~~v~rYHSl~~~~~p~~~~~~ 158 (208)
T PRK05637 80 CLGYQALIEYHGGKVEPCGP-VHGTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIGRYHSLGCVVAPDGIESL 158 (208)
T ss_pred HHHHHHHHHHCCCEEECCCC-CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCEEE
T ss_conf 47789999970978830677-65506678987888877000688765544553456775357710601671079997488
Q ss_pred ECCC--CC-CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 3239--83-17889863500112465212221520257799875501
Q gi|254780414|r 153 ASSD--ST-PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 153 A~S~--~~-~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
+.++ .+ .++|++|+++++||||||||+.+|++|.+||+||+-.+
T Consensus 159 ~~~~~~~~~viMa~~h~~~p~~GVQFHPESi~T~~G~~il~nfv~~~ 205 (208)
T PRK05637 159 GTCSSEIGDVIMAARTTDGKAIGLQFHPESVLSPTGPVILSRCVEQL 205 (208)
T ss_pred EEEECCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99975999999999978999799866975368877799999999999
No 24
>pfam00958 GMP_synt_C GMP synthase C terminal domain. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. This family is the C-terminal domain specific to the GMP synthases EC:6.3.5.2. In prokaryotes this domain mediates dimerization. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains.
Probab=100.00 E-value=7.5e-41 Score=312.16 Aligned_cols=93 Identities=68% Similarity=1.061 Sum_probs=91.9
Q ss_pred HHHHHHCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99998646533322010455686324215998541447999632168775587101898999987557504879812578
Q gi|254780414|r 427 REEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVV 506 (520)
Q Consensus 427 ~~~l~~~~ly~~~~q~~avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~ 506 (520)
++||+++|||+++|||||+|||+||||||||+|+|+|+|+||+|+|.|||||+|+++||++|++||+||+|||+|||||+
T Consensus 1 ~eel~~~gly~~iwQ~favLlPvksVGV~GD~RsY~~~v~lR~V~S~D~MTA~~~~~p~~~L~~is~rI~nev~~v~rV~ 80 (93)
T pfam00958 1 IEELRKAGLYDKIWQAFAVLLPVKSVGVMGDERTYGYVVALRAVESTDFMTADWARLPYEVLERISNRITNEVPGVNRVV 80 (93)
T ss_pred CHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 94688777456545353686154323554885145304899978625554235566999999999999987077757799
Q ss_pred ECCCCCCCCCCCC
Q ss_conf 6089417976668
Q gi|254780414|r 507 YDITSKPPATIEW 519 (520)
Q Consensus 507 ydit~Kpp~tiew 519 (520)
|||||||||||||
T Consensus 81 yDiT~KPP~TIEw 93 (93)
T pfam00958 81 YDITSKPPATIEW 93 (93)
T ss_pred EECCCCCCCCCCC
T ss_conf 9789998977669
No 25
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=100.00 E-value=1.5e-37 Score=288.50 Aligned_cols=180 Identities=28% Similarity=0.346 Sum_probs=164.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHH
Q ss_conf 36640564047799999986223656999973895515627899998862369857997588999999668988899998
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRK 304 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRk 304 (520)
|++|+||||||||+|+|.|+|+|++++||++|+|+||++|.+++.+..+. +|+++.+++.++.+...+. .+|++++.
T Consensus 1 V~vA~SGGVDSs~la~la~~alG~~v~aV~~~s~~~~~~E~e~a~~~a~~-~gi~~~~i~~~~l~~~~~~--~N~~~RCy 77 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKE-IGIRHEVIETDELDDPEFA--KNPPDRCY 77 (202)
T ss_pred CEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHC--CCCHHHHH
T ss_conf 98982385999999999999768787999972798997899999999986-3985799734111016554--59755622
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHH--HHHHHHHHH
Q ss_conf 875658999999997439970998646220245420246777630344302320113203202237898--738999999
Q gi|254780414|r 305 VIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKE--LFKDEVRLL 382 (520)
Q Consensus 305 iIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~--l~KdEVR~l 382 (520)
+..+.|++.+.+.|++. +.++++|||.|+|+.|.. .|+.-...+.+++||++ |+|||||++
T Consensus 78 ~CK~~l~~~l~~~a~~~-g~~~v~dGtn~dDl~d~R----------------PGl~A~~e~~v~sPL~e~gl~K~eVR~l 140 (202)
T cd01990 78 LCKKALYEALKEIAEEL-GLDVVLDGTNADDLGDYR----------------PGLKALRELGVRSPLAEAGLGKAEIREL 140 (202)
T ss_pred HHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCC----------------CCHHHHHHCCCCCCHHHCCCCHHHHHHH
T ss_conf 99899999999999967-997894157576323557----------------8688998769988526519788999999
Q ss_pred HHHHCCCHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 99819998894268889831112210--00367899999999999999
Q gi|254780414|r 383 GKELRLPDSFVERHPCPGPGLAIRCI--GEITEERINILRESDAIYRE 428 (520)
Q Consensus 383 g~~Lglp~~~~~RhPFPGPGLaiRi~--g~vt~e~~~i~r~ad~i~~~ 428 (520)
+++|||| +|++| |+|+||.|++ ++||+|+++++++|++++.+
T Consensus 141 a~~lgLp---~~~kp-~~~CLasRip~g~~it~e~L~~v~~aE~~L~~ 184 (202)
T cd01990 141 ARELGLP---TWDKP-AMACLASRIPYGTEITEERLKKVEAAEEFLRS 184 (202)
T ss_pred HHHCCCC---CCCCC-CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9983998---56689-98754666578884899999999999999998
No 26
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=2.1e-37 Score=287.61 Aligned_cols=179 Identities=21% Similarity=0.418 Sum_probs=137.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCCCCCCCCCCCC---HHHHHCCCCEE
Q ss_conf 869999889705788998888659406985289898899723997999985-38899999997537---68980899889
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPASSLDIDSPQIP---KEILESNIPLL 83 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~SV~d~~ap~~~---~~I~~~~iPIL 83 (520)
.+|+||||||||+|+|+|++|++|++++|.. ..+++. ++++|||+| |+.+..-+....+. .+.++.++|||
T Consensus 2 k~I~Iid~G~~n~~si~~~l~~lg~~~~i~~---~~~~l~--~~d~iILPGvG~~~~~~~~l~~~~~~i~~~~~~~~PiL 76 (201)
T PRK13143 2 KMIVIIDYGLGNLRSVSKGLERAGADVEITS---DPEEIL--SADGIVLPGVGAFGDVMENLGPLKETINEAVDDGKPFL 76 (201)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEECC---CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 8899998897199999999998698599928---999984--37967973888188999876515799999998699879
Q ss_pred EECHHHHHHHHH------------CCCEEEECCC----CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCC
Q ss_conf 977899998997------------0969998698----661036675238862227872665533686002201101244
Q gi|254780414|r 84 GICYGQQIMCQS------------LGGKTKNSQS----REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPE 147 (520)
Q Consensus 84 GICyG~QlLa~~------------~GG~V~~~~~----~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~ 147 (520)
|||||||+|+.. ++|+|.+... +++|+..+.+.+++++|+++. ....+||+|++.+...++
T Consensus 77 GIClGmQll~~~s~E~~~~~GLg~~~g~v~~~~~~~~ip~~G~~~i~~~~~~~l~~~i~---~~~~~yf~Hs~~~~~~~~ 153 (201)
T PRK13143 77 GICLGMQMLFESSEEGGLTKGLGLIPGRVVRFPPGVKVPHMGWNTVNIVKDCPLFEGIK---DGEYFYFVHSYYADPDDP 153 (201)
T ss_pred EEEHHHHHHHHHCCCCCCCCCCEEECCEEEECCCCCCCCCCCCEEEEEECCCHHHCCCC---CCCEEEEEEEEEEEECCC
T ss_conf 98089865534140267644536863389973654446634426876532680122866---554799971448982798
Q ss_pred CCCEEECCC-CCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 421123239-831788986350011246521222152025779987550106
Q gi|254780414|r 148 GFEVIASSD-STPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAG 198 (520)
Q Consensus 148 gf~viA~S~-~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~ 198 (520)
++. +|.|+ ...++++ ..++++||+|||||+ +|+.|.+||+||+ ++|+
T Consensus 154 ~~~-~~~t~~~~~~~a~-i~~~ni~GvQFHPEk-s~~~G~~ilknF~-~~~k 201 (201)
T PRK13143 154 DVI-VATTDYGIEFPAV-VCKGNVFGTQFHPEK-SGETGLKILENFV-ELIK 201 (201)
T ss_pred CCE-EEEECCCCEEEEE-EECCCEEEEECCCCC-CCCCHHHHHHHHH-HHHC
T ss_conf 626-8996199808999-938989999189823-6725599999999-9869
No 27
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=100.00 E-value=5.4e-37 Score=284.60 Aligned_cols=175 Identities=28% Similarity=0.476 Sum_probs=135.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-----CCCCCCCCCCCHHHHHCCCCE
Q ss_conf 69999889705788998888659406985289898899723997999985-388-----999999975376898089988
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-----SSLDIDSPQIPKEILESNIPL 82 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-----SV~d~~ap~~~~~I~~~~iPI 82 (520)
.|+|+||||||+|+|+|++|++|++|+|.+ +.+++. +.+++||+| |.. +..+.+.+...++.++.++||
T Consensus 1 mI~IiD~G~~n~~si~r~l~~lg~~~~i~~---~~~~l~--~~d~lIlPGvG~~~~~~~~l~~~~~~~~i~~~~~~~~Pi 75 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSS---DPEEIE--GADKVILPGVGAFGQAMAALRESGLDEAIKEHVEKKQPV 75 (199)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEC---CHHHHH--HHHCEECCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf 999998896099999999998698099979---999974--211004579865330256665638679999999769988
Q ss_pred EEECHHHHHHHHH-----------CCCEEEECCCC-----CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCC
Q ss_conf 9977899998997-----------09699986986-----6103667523886222787266553368600220110124
Q gi|254780414|r 83 LGICYGQQIMCQS-----------LGGKTKNSQSR-----EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIP 146 (520)
Q Consensus 83 LGICyG~QlLa~~-----------~GG~V~~~~~~-----EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP 146 (520)
||||||||+|+.. ++|+|.+...+ +.|+..+...+++++|+++. ....+||+|+|.+...+
T Consensus 76 LGIClGmQlL~~~~~eg~~~GLgl~~g~v~~~~~~~~~~phiGw~~i~~~~~~~lf~~~~---~~~~~yf~Hs~~v~~~~ 152 (199)
T PRK13181 76 LGICLGMQLLCESSEEGNVKGLGLIPGDVKRFRSGKDKVPQMGWNSVKPLKESPLFKGIE---ENSRFYFVHSYYVPPED 152 (199)
T ss_pred EEEEEEEEEEEECCCCCCCCCCCEECCEEEECCCCCCCCCCCCCEEEEEECCCHHHCCCC---CCCEEEEEEEEEEECCC
T ss_conf 998042676541000365466666212899827765555777745887621684453765---55604888503786178
Q ss_pred CCCCEEECCCCC-CE-EEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 442112323983-17-889863500112465212221520257799875501
Q gi|254780414|r 147 EGFEVIASSDST-PF-AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 147 ~gf~viA~S~~~-~i-aai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
++ .++|.++.+ .+ ++++ +.++||+|||||++| +.|.+||+||+ ++
T Consensus 153 ~~-~~~a~~~~g~~~~~~v~--~~ni~GvQFHPE~s~-~~G~~il~nFl-~i 199 (199)
T PRK13181 153 PE-DVLATTNYGVPFCSAVE--KDNIYAVQFHPEKSG-KAGLKLLKNFA-EL 199 (199)
T ss_pred CC-CEEEEECCCCEEEEEEE--CCCEEEEECCCCCCC-HHHHHHHHHHH-CC
T ss_conf 76-32799638984999998--999999908978178-60999999986-69
No 28
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.1e-34 Score=264.85 Aligned_cols=181 Identities=28% Similarity=0.457 Sum_probs=156.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHH--HHCCCCEEE
Q ss_conf 869999889705788998888659406985289-89889972399799998538899999997537689--808998899
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEI--LESNIPLLG 84 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I--~~~~iPILG 84 (520)
-+||++|.=-.||..++..+|+++....++..+ .+.+++...+|++||+|.||.+..|.+ .....| +..++||||
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G--~~~~~i~~~~~~~PiLG 79 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAG--ISLELIRRFAGRIPILG 79 (191)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCC--HHHHHHHHHCCCCCEEE
T ss_conf 5699997744249999999997399349998896587788604999899848997937736--18999998608998899
Q ss_pred ECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHC--CCCCCCEEECCCC-CCEE
Q ss_conf 778999989970969998698661036675238862227872665533686002201101--2444211232398-3178
Q gi|254780414|r 85 ICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH--IPEGFEVIASSDS-TPFA 161 (520)
Q Consensus 85 ICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~--lP~gf~viA~S~~-~~ia 161 (520)
||+|||.|+.+|||+|.+++..-+|++...-...+.+|+|++ +.+.|-..|+-.+.+ +|++|+++|.|++ +.++
T Consensus 80 VCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h~g~~iF~glp---~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IM 156 (191)
T COG0512 80 VCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAGLP---NPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIM 156 (191)
T ss_pred ECCCHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCCCCCC---CCCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEE
T ss_conf 874378999973978875597767812554029960015799---98888862789844787998338999968998798
Q ss_pred EEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 89863500112465212221520257799875
Q gi|254780414|r 162 FIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 162 ai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|++|++.|+||||||||+..|+.|.+||+||+
T Consensus 157 ai~h~~~pi~gvQFHPESilT~~G~~il~Nfl 188 (191)
T COG0512 157 AVRHKKLPIYGVQFHPESILTEYGHRILENFL 188 (191)
T ss_pred EEEECCCCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 88608998788820871036621489999998
No 29
>PRK13566 anthranilate synthase; Provisional
Probab=100.00 E-value=7e-34 Score=262.37 Aligned_cols=191 Identities=24% Similarity=0.406 Sum_probs=168.8
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 34488699998897057889988886594069852898988997239979999853889999999753768980899889
Q gi|254780414|r 4 RERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 4 ~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
.....|||++|.--.++|.+|+.+|++|..+.++.++.+.+.+...+|++|+||.||....|.+.+..-...+..++|||
T Consensus 520 ~~~g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d~~~~~l~~~~pD~vvlSPGPG~P~d~g~~~~i~~~~~~~iPil 599 (724)
T PRK13566 520 VGSGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYPVAEEILDRVNPDLVVLSPGPGRPEDFDCKATIDAALARNLPIF 599 (724)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCEEEECCCCCCCHHCCCHHHHHHHHHCCCCEE
T ss_conf 78775799984653279999999998198799981898767776318898998799979000558599999985799879
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEE-EEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCCCCCE
Q ss_conf 97789999899709699986986610366-7523886222787266553368600220110--12444211232398317
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAF-IEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDSTPF 160 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~-I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~~~~i 160 (520)
|+|+|||.|+.+|||+|.+.+..-+|++. |..+....+|.|+ ++.+.+-..|+-.+. .+|++++++|.|+++.|
T Consensus 600 GVCLGhQaI~eafGg~l~~~~~p~HGK~S~I~~~~~~~~F~gl---p~~f~v~RYHSL~v~~~~lP~~L~VTA~tedGvi 676 (724)
T PRK13566 600 GVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGLVFSGL---PNEFTVGRYHSLFADPERLPDELLVTAETEDGVI 676 (724)
T ss_pred EECCCHHHHHHHHCCEEEECCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEE
T ss_conf 9771276998974938854585788981357984897410789---9960788413798626779983389998589828
Q ss_pred EEEEECCCCEEEEEEEEHHHCC---CHHHHHHHHHHHHHC
Q ss_conf 8898635001124652122215---202577998755010
Q gi|254780414|r 161 AFIADEKRKYYAVQFHPEVVHT---VGGSQLIDNFVHHVA 197 (520)
Q Consensus 161 aai~~~~~~iyGVQFHPEV~hT---~~G~~iL~NFl~~Ic 197 (520)
+|++|+..|++|||||||+..| +.|.+||+|++-...
T Consensus 677 Mai~H~~lpi~gVQFHPESIlT~~g~~G~~ii~N~~~~~~ 716 (724)
T PRK13566 677 MAIEHKTLPVAAVQFHPESIMTLGGEVGLRIIENVVRLLA 716 (724)
T ss_pred EEEEECCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9885178761256107678622887443999999999986
No 30
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=6.5e-35 Score=269.75 Aligned_cols=172 Identities=24% Similarity=0.373 Sum_probs=132.5
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-----CCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 9999889705788998888659406985289898899723997999985-388-----9999999753768980899889
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-----SSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-----SV~d~~ap~~~~~I~~~~iPIL 83 (520)
|.|||||+||+|+|+|++|++|++|+++. +.+++. ++++|||+| |.. +..+.+......+.++.++|||
T Consensus 1 I~IiD~G~~ni~si~~~l~~lg~~~~ii~---~~~~l~--~~d~iIlPGvG~f~~~~~~l~~~~~~~~i~~~~~~~~PiL 75 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITS---DPEEIL--SADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFL 75 (198)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--HCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCEE
T ss_conf 99997697789999999998799299979---999983--0898998788740344444100381999999987699689
Q ss_pred EECHHHHHHHHH------------CCCEEEECCCC------CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCC
Q ss_conf 977899998997------------09699986986------610366752388622278726655336860022011012
Q gi|254780414|r 84 GICYGQQIMCQS------------LGGKTKNSQSR------EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHI 145 (520)
Q Consensus 84 GICyG~QlLa~~------------~GG~V~~~~~~------EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~l 145 (520)
|||+|||+|+.. ++|+|.+.+.. +.|+..+...+++++|.++. ....+||+|++.+. .
T Consensus 76 GIClG~QlL~~~s~E~~~~~gLg~~~g~V~~~~~~~~~~iP~iGwn~i~~~~~~~~~~~~~---~~~~~yF~HS~~v~-~ 151 (198)
T cd01748 76 GICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLFKGIP---DGSYFYFVHSYYAP-P 151 (198)
T ss_pred EEEEEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHCCCC---CCCEEEEEECCEEE-C
T ss_conf 9981145466676506863553655409998877778866411224675033680320777---67535886241775-2
Q ss_pred CCCCCEEECCCC-CC-EEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 444211232398-31-7889863500112465212221520257799875
Q gi|254780414|r 146 PEGFEVIASSDS-TP-FAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 146 P~gf~viA~S~~-~~-iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
++...++|.++. .. +++++ .+++||+|||||++| +.|.+||+||+
T Consensus 152 ~~~~~~~a~~~~~~~~~a~i~--~~ni~GvQFHPEkS~-~~G~~ll~nFl 198 (198)
T cd01748 152 DDPDYILATTDYGGKFPAAVE--KDNIFGTQFHPEKSG-KAGLKLLKNFL 198 (198)
T ss_pred CCCCEEEEEECCCCEEEEEEE--CCCEEEEECCCCCCC-HHHHHHHHHHC
T ss_conf 897506889759983999998--799999978985247-60899999539
No 31
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=100.00 E-value=2.7e-33 Score=258.13 Aligned_cols=172 Identities=27% Similarity=0.486 Sum_probs=134.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCC----CCCHHHHHCCCCE
Q ss_conf 86999988970578899888865940698528989889972399799998538899999-997----5376898089988
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSP----QIPKEILESNIPL 82 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap----~~~~~I~~~~iPI 82 (520)
-+|+++|||.+.+ |.|++-+-|+--.|+||++++++|++.+||||+||+||. |+ .+. ..-+++++.++|+
T Consensus 197 ~~Vv~~DfG~K~n--Ilr~L~~rG~~v~vVP~~~~~~~i~~~~PDGiflSNGPG---DPH~~~~~~i~~~~~l~~~~~P~ 271 (383)
T TIGR01368 197 LRVVVIDFGVKQN--ILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPG---DPHAAVEPAIETVRELLEAKIPI 271 (383)
T ss_pred EEEEEEECCCCHH--HHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEEEECCCC---CCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5999985588755--898997669879996789988999865788899908798---80567899999999998448971
Q ss_pred EEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEE---CCCHHH--CCC-CCCCEEECCC
Q ss_conf 9977899998997096999869866103667523886222787266553368600---220110--124-4421123239
Q gi|254780414|r 83 LGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMS---HGDQVE--HIP-EGFEVIASSD 156 (520)
Q Consensus 83 LGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmS---H~D~V~--~lP-~gf~viA~S~ 156 (520)
||||+||||||.|+||+..|.+-+..|. |.|.-+ + .+-+|.|+ ||++|+ .|| .+|+++-.+-
T Consensus 272 fGICLGHQllALA~Ga~TyKlKFGHRG~-------NhPV~~-~----~~g~v~ITsQNHGyAVD~~sl~~~~~~~th~nL 339 (383)
T TIGR01368 272 FGICLGHQLLALAFGAKTYKLKFGHRGG-------NHPVKD-L----RTGRVEITSQNHGYAVDEESLLAGDLEVTHVNL 339 (383)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCCCC-------CCCEEE-C----CCCEEEEEEECCCEECCHHHCCCCCEEEEEEEC
T ss_conf 0026668999997388700046567887-------513144-2----798799997068712575355788538999835
Q ss_pred -CCCEEEEEECCCCEEEEEEEEHHHCCCHHHH-HHHHHHHHH
Q ss_conf -8317889863500112465212221520257-799875501
Q gi|254780414|r 157 -STPFAFIADEKRKYYAVQFHPEVVHTVGGSQ-LIDNFVHHV 196 (520)
Q Consensus 157 -~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~-iL~NFl~~I 196 (520)
|+.+|+|+|+++|+|+||||||.+-.|+-.. ||+.|+-.|
T Consensus 340 NDgt~EG~~h~~~P~fSVQyHPEA~PGPhD~~~lFd~F~~~~ 381 (383)
T TIGR01368 340 NDGTVEGIRHKDLPVFSVQYHPEASPGPHDTEYLFDEFIDLI 381 (383)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 979331530058786677006888887002379999999998
No 32
>PRK13175 consensus
Probab=100.00 E-value=3.8e-32 Score=249.99 Aligned_cols=178 Identities=24% Similarity=0.321 Sum_probs=132.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCC------CCCCCCCCCCCHHHHHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985388------99999997537689808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPA------SSLDIDSPQIPKEILESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~------SV~d~~ap~~~~~I~~~~iP 81 (520)
.||+|||||+|+.++|+|++|++|+++++.. ..+++. +.+++||+|+-+ +..+.+......+.++.++|
T Consensus 2 ~kI~IiD~g~gn~~si~~al~~lg~~~~i~~---~~~~i~--~~d~lILPGvGsf~~~~~~l~~~~l~~~i~~~~~~g~P 76 (206)
T PRK13175 2 PKIAVIDYGMGNLHSVCKALERLGAEPILTS---DPADLL--AADALILPGVGAFDPAMQNLRSRGLIPPIKDAIASGKP 76 (206)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--CCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 8799997997689999999998799899979---989983--28928968998526788755531871689999856997
Q ss_pred EEEECHHHHHHHHH-----------CCCEEEECC------CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHC
Q ss_conf 89977899998997-----------096999869------8661036675238862227872665533686002201101
Q gi|254780414|r 82 LLGICYGQQIMCQS-----------LGGKTKNSQ------SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH 144 (520)
Q Consensus 82 ILGICyG~QlLa~~-----------~GG~V~~~~------~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~ 144 (520)
|||||+|||+|+.. ++|+|.+.. .++.|+..+...+++++|+++. ....+|++|++++..
T Consensus 77 iLGIClGmQlL~~~seeg~~~GLgli~g~V~k~~~~~~~~iPh~Gw~~i~~~~~~~l~~~~~---~~~~~yf~HSy~~~~ 153 (206)
T PRK13175 77 FLGICLGLQLLFESSEEGTEPGLGILPGKVQRFPSEPGLRIPHMGWNQLLTQPDCPLWENLP---PNPWVYFVHSYYAVP 153 (206)
T ss_pred EEEEEHHHHHHHHCCCCCCCCCCCEECEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCC---CCCCEEEEECCEEEE
T ss_conf 79986786676132534564776352107986265555337610450578517884201126---788238975007840
Q ss_pred CCCCCCEEECCC--CCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf 244421123239--83178898635001124652122215202577998755010
Q gi|254780414|r 145 IPEGFEVIASSD--STPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 145 lP~gf~viA~S~--~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
.++...+...+. ...+++++. .++||+|||||.++ +.|.+||+||| +.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~v~~--~ni~G~QFHPEkS~-~~G~~llknFl-~~v 204 (206)
T PRK13175 154 LDPSDTAATVTHGSQKVTAAIAR--DNLMAVQFHPEKSG-TAGLKLLRNFV-SQV 204 (206)
T ss_pred CCCCCEEEEEECCCCCEEEEEEC--CCEEEEECCCCCCC-CCHHHHHHHHH-HHH
T ss_conf 68762699996089838999978--99999948982468-43789999999-996
No 33
>PRK09065 glutamine amidotransferase; Provisional
Probab=100.00 E-value=3.3e-32 Score=250.39 Aligned_cols=168 Identities=27% Similarity=0.452 Sum_probs=135.4
Q ss_pred CCEEEEEECCC----------CHHHHHHHHHHHCCCEEEEECC-C-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH-
Q ss_conf 88699998897----------0578899888865940698528-9-898899723997999985388999999975376-
Q gi|254780414|r 7 SSKVLIIDFGS----------QFTQLIARRVRESKVYCEVIAF-K-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPK- 73 (520)
Q Consensus 7 ~~~IlIlDfGS----------QytqLIaRriRelgVyseI~P~-~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~- 73 (520)
.-||+||.+|. +|...+.+-+++.+.--+++.. + ..+..+ .+++|+|++|||+|||| +.|++.+
T Consensus 3 m~ki~IL~~g~~~~~~~~~~G~y~~~f~~ll~~~~~~~~~~~v~~ge~~p~~--~~~dg~iitGS~~~v~d-~~pWi~~l 79 (238)
T PRK09065 3 MLPLLIIETGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVDVFAGEPLPAP--EDFAGVLITGSHAMVTD-RAPWSERT 79 (238)
T ss_pred CCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCH--HHCCEEEEECCCCCCCC-CCHHHHHH
T ss_conf 6169999889898799987399899999987236985799967279899895--78488999798520579-98889999
Q ss_pred -----HHHHCCCCEEEECHHHHHHHHHCCCEEEECCC-CCCCEEEEEECC---CCCCCCCCCCCCCCEEEEEECCCHHHC
Q ss_conf -----89808998899778999989970969998698-661036675238---862227872665533686002201101
Q gi|254780414|r 74 -----EILESNIPLLGICYGQQIMCQSLGGKTKNSQS-REFGRAFIEIKK---NCSLLKGMWEKGSKQQVWMSHGDQVEH 144 (520)
Q Consensus 74 -----~I~~~~iPILGICyG~QlLa~~~GG~V~~~~~-~EyG~~~I~i~~---~~~lf~gl~~~~~~~~VwmSH~D~V~~ 144 (520)
++++.++|+||||||||+||+++||+|.+.+. .|.|...++++. .+++|.++ +..+.++++|+|.|.+
T Consensus 80 ~~~ir~~~~~~~PilGICfGhQllA~AlGG~V~~~p~G~eiG~~~v~lt~~g~~dplf~~~---p~~~~~~~~H~D~V~~ 156 (238)
T PRK09065 80 ADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVALELHPAAAQDPLFAGL---PATFPAHATHLQTVLR 156 (238)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEEEECCCCCCCCEEEEEECHHCCCCCHHCCC---CCCCEEEEEEECEEEE
T ss_conf 9999999877999999817789999984987976799763651256875100457111189---8761799995142896
Q ss_pred CCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHC
Q ss_conf 2444211232398317889863500112465212221
Q gi|254780414|r 145 IPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVH 181 (520)
Q Consensus 145 lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~h 181 (520)
+|+|++++|+|+.|++++++..+ ++||+|||||.++
T Consensus 157 lP~ga~~LAss~~c~~qa~~~g~-~~~gvQfHPEft~ 192 (238)
T PRK09065 157 LPPGAVVLARSAHDPHQAFRYGP-SAWGVQFHPEFTA 192 (238)
T ss_pred CCCCEEEEEECCCCHHHHEEECC-CEEEEECCCCCCH
T ss_conf 49983899809999057178589-4899956862899
No 34
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=2.4e-31 Score=244.30 Aligned_cols=176 Identities=27% Similarity=0.450 Sum_probs=137.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCHHHHHCCCCEE
Q ss_conf 44886999988970578899888865940698528989889972399799998538899999-99753768980899889
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSPQIPKEILESNIPLL 83 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~~~iPIL 83 (520)
....+|+++|||.+++ |.|.+.+.|+...++||+++++++.+.+|+||+||+||....+- .+...-+++++.++|||
T Consensus 169 ~~~~~V~viD~GvK~n--Ilr~L~~rg~~v~VvP~~~~~~~I~~~~pDGIflSNGPGDP~~~~~~i~~ik~li~~~~Pif 246 (355)
T PRK12564 169 GGGYHVVAIDFGVKRN--ILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPAALDYAIEMIKELLEGKIPIF 246 (355)
T ss_pred CCCEEEEEEECCCHHH--HHHHHHHCCCEEEEECCCCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 9971899993787388--99999987986999689787657641488889967999996887999999999852698789
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEE---ECCCHHH--CCCCCCCEEECCC-C
Q ss_conf 97789999899709699986986610366752388622278726655336860---0220110--1244421123239-8
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWM---SHGDQVE--HIPEGFEVIASSD-S 157 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~Vwm---SH~D~V~--~lP~gf~viA~S~-~ 157 (520)
|||+|||+||.++|+++.|.+.+..|. +.|..+ + .+-.||+ .||++|. .+|++++++..+- +
T Consensus 247 GICLGHQllalA~Ga~t~Km~fGHrG~-------NhPV~~-l----~t~~v~iTSQNHGyaVd~~sl~~~~~vt~~nlnD 314 (355)
T PRK12564 247 GICLGHQLLALALGAKTYKMKFGHRGA-------NHPVKD-L----ETGKVEITSQNHGFAVDEDSLPENLEVTHVNLND 314 (355)
T ss_pred EECHHHHHHHHHCCCEECCCCCCCCCC-------CCCCEE-C----CCCEEEEEECCCCEEECCCCCCCCEEEEEEECCC
T ss_conf 988879999997198442055565789-------977335-5----7873999716742286666589873999993899
Q ss_pred CCEEEEEECCCCEEEEEEEEHHHCCCH-HHHHHHHHHH
Q ss_conf 317889863500112465212221520-2577998755
Q gi|254780414|r 158 TPFAFIADEKRKYYAVQFHPEVVHTVG-GSQLIDNFVH 194 (520)
Q Consensus 158 ~~iaai~~~~~~iyGVQFHPEV~hT~~-G~~iL~NFl~ 194 (520)
+.+++++|+++|+|+||||||..-.+. ..-+++.|+-
T Consensus 315 gtvEGi~h~~~p~fSVQfHPEa~pGP~D~~~lFd~F~~ 352 (355)
T PRK12564 315 GTVEGLRHKDLPAFSVQYHPEASPGPHDAAYLFDEFVE 352 (355)
T ss_pred CCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 96721788899878972188999899753889999999
No 35
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.97 E-value=3.9e-31 Score=242.74 Aligned_cols=174 Identities=27% Similarity=0.476 Sum_probs=133.3
Q ss_pred EEEEEECCCCH-HHHHHHHHHHCC---CEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH------HHHHC
Q ss_conf 69999889705-788998888659---406985289898899723997999985388999999975376------89808
Q gi|254780414|r 9 KVLIIDFGSQF-TQLIARRVRESK---VYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPK------EILES 78 (520)
Q Consensus 9 ~IlIlDfGSQy-tqLIaRriRelg---VyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~------~I~~~ 78 (520)
+|+||.....- .-.....+|+.+ +...++........-...+++|+|+||||+||++++.|++.+ ++++.
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvii~Gg~~~~~~~~~pwi~~~~~~i~~~~~~ 80 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA 80 (188)
T ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98999779999974899999966998468999966669899784440889996998777867886699999999999987
Q ss_pred CCCEEEECHHHHHHHHHCCCEEEECCCC-CCCEEEEEECC---CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEC
Q ss_conf 9988997789999899709699986986-61036675238---8622278726655336860022011012444211232
Q gi|254780414|r 79 NIPLLGICYGQQIMCQSLGGKTKNSQSR-EFGRAFIEIKK---NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIAS 154 (520)
Q Consensus 79 ~iPILGICyG~QlLa~~~GG~V~~~~~~-EyG~~~I~i~~---~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~ 154 (520)
++|+||||||||+||.++||+|.+++.+ |.|...+.+++ .+++|.++ +..+.++++|+|.|.++|++++++|+
T Consensus 81 ~~PilGIC~G~Qlla~alGg~V~~~~~~~e~G~~~i~lt~~~~~~~~~~~~---~~~~~~~~~H~d~v~~lP~~~~~la~ 157 (188)
T cd01741 81 GKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGL---PDEFPVFHWHGDTVVELPPGAVLLAS 157 (188)
T ss_pred CCCEEEECHHHHHHHHHCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCC---CCCCCHHHHHHEEEEECCCCCEEEEE
T ss_conf 999999846899999983999987898752157999995476654221479---97654340210272438999899998
Q ss_pred CCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 398317889863500112465212221520257799875
Q gi|254780414|r 155 SDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 155 S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|+.|+++|++..+ ++||+||||| ..+++||+
T Consensus 158 s~~~~~qa~~~~~-~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 158 SEACPNQAFRYGD-RALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred CCCCCEEEEEECC-EEEEEECCCC-------HHHHHHCC
T ss_conf 8999788999799-5899957612-------76676309
No 36
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.97 E-value=1.1e-30 Score=239.47 Aligned_cols=177 Identities=25% Similarity=0.431 Sum_probs=133.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCC-CCCCCCCCHH---HHHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985-388-999-9999753768---9808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSL-DIDSPQIPKE---ILESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~-d~~ap~~~~~---I~~~~iP 81 (520)
..|.|+|||+|+.++|+|.+|++|+.++++. +.+++. +.+++||+| |.. +.. .-....++.. ..+.++|
T Consensus 1 ~mI~Iid~g~gNi~si~~al~~lG~~~~ii~---~~~~l~--~~d~lIlPGvGsf~~~~~~L~~~~l~~~i~~~~~~~~P 75 (204)
T PRK13141 1 TMIAIIDYGMGNLHSVSKALERLGAEAIITS---DPEEIL--AADAVILPGVGAFPDAMQNLRERGLVEVIKEAVASGKP 75 (204)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--HCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 9899997897589999999998699899979---999984--08989986887505687764653929999999865996
Q ss_pred EEEECHHHHHHHHH------------CCCEEEECCCC------CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH
Q ss_conf 89977899998997------------09699986986------6103667523886222787266553368600220110
Q gi|254780414|r 82 LLGICYGQQIMCQS------------LGGKTKNSQSR------EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE 143 (520)
Q Consensus 82 ILGICyG~QlLa~~------------~GG~V~~~~~~------EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~ 143 (520)
|||||+|||+|+.. +.|+|.+.... +.||..+...+++++|++++ ....+|++|++.+.
T Consensus 76 iLGIClGmQlL~~~s~E~g~~~GLgl~~g~v~~~~~~~~~~vPhiGw~~i~~~~~~~l~~~~~---~~~~~yf~HSy~v~ 152 (204)
T PRK13141 76 LLGICLGMQLLFESSEEFGDTEGLGLLPGKVRRFPPGEGLKVPHMGWNQLEFTRPSPLLAGLP---EGAYVYFVHSYYAD 152 (204)
T ss_pred EEEEHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHCCC---CCCCEEEEECCEEE
T ss_conf 897549899973013104664665436689997788888856510305776113780541677---77723786242783
Q ss_pred CCCCCCCEEECCCC-CCE-EEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf 12444211232398-317-8898635001124652122215202577998755010
Q gi|254780414|r 144 HIPEGFEVIASSDS-TPF-AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 144 ~lP~gf~viA~S~~-~~i-aai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
.++...++|.++. ..+ ++++. .++||+|||||.+|+ .|.+||+||+ ++|
T Consensus 153 -~~~~~~~~a~~~~g~~i~a~i~~--~ni~G~QFHPEkS~~-~G~~ilknFl-~l~ 203 (204)
T PRK13141 153 -PPDEEVVAATCDYGQKFPAAVAK--DNLFGVQFHPEKSGD-IGLKILKNFL-EMV 203 (204)
T ss_pred -CCCCCCEEEEECCCCEEEEEEEC--CCEEEEECCCCCCCH-HHHHHHHHHH-HHH
T ss_conf -38975289995599889999971--999999889851485-2799999999-974
No 37
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.97 E-value=9.6e-31 Score=239.95 Aligned_cols=174 Identities=25% Similarity=0.432 Sum_probs=135.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCHHHHH-CCCCEEE
Q ss_conf 886999988970578899888865940698528989889972399799998538899999-99753768980-8998899
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSPQIPKEILE-SNIPLLG 84 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~-~~iPILG 84 (520)
.-+|+++|||..++ |.|.+.+.|+...++|++++++++...+|+||+||+||....+- .+....+++++ .++||||
T Consensus 194 ~~~VvviD~GiK~n--ILr~L~~~g~~v~VvP~~~~~~~I~~~~PDGIfLSNGPGDP~~~~~~i~~i~~li~~~~iPifG 271 (383)
T CHL00197 194 PLRIIVIDFGVKYN--ILRRLKSFGCEITIVPATSTYQDIMAYQPDGILLSNGPGDPSTVHYGIKTVKKLIKKANIPIFG 271 (383)
T ss_pred CCEEEEEECCCCHH--HHHHHHHCCCEEEEECCCCCCCHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 74599996777188--9999997899899989998511342568888997899999789899999999999648997899
Q ss_pred ECHHHHHHHHHCCCEEEECCCCCCCE-EEEEECCCCCCCCCCCCCCCCEEEEE---ECCCHH--HCCCCC-CCEEECCC-
Q ss_conf 77899998997096999869866103-66752388622278726655336860---022011--012444-21123239-
Q gi|254780414|r 85 ICYGQQIMCQSLGGKTKNSQSREFGR-AFIEIKKNCSLLKGMWEKGSKQQVWM---SHGDQV--EHIPEG-FEVIASSD- 156 (520)
Q Consensus 85 ICyG~QlLa~~~GG~V~~~~~~EyG~-~~I~i~~~~~lf~gl~~~~~~~~Vwm---SH~D~V--~~lP~g-f~viA~S~- 156 (520)
||+|||+||.++|+++.|.+.+..|. .++.. +-.||+ .||++| .++|++ ++++..+-
T Consensus 272 ICLGHQlLalA~GakT~KmkfGHrG~NhPV~~---------------t~kv~ITSQNHGyaVd~~sl~~~~~~vt~~nln 336 (383)
T CHL00197 272 ICMGHQILSLALEAKTFKLKFGHRGLNHPSGL---------------NQQVEITSQNHGFAVNAESLAKNKVYVTHFNLN 336 (383)
T ss_pred ECHHHHHHHHHCCCEEEECCCCCCCCCCCCCC---------------CCCEEEEECCCCEEECCCCCCCCCCEEEEECCC
T ss_conf 55889999997398375668887798866015---------------875799627876176744478873189999388
Q ss_pred CCCEEEEEECCCCEEEEEEEEHHHCCCH-HHHHHHHHHHHHC
Q ss_conf 8317889863500112465212221520-2577998755010
Q gi|254780414|r 157 STPFAFIADEKRKYYAVQFHPEVVHTVG-GSQLIDNFVHHVA 197 (520)
Q Consensus 157 ~~~iaai~~~~~~iyGVQFHPEV~hT~~-G~~iL~NFl~~Ic 197 (520)
++.+++++|+++|+|+||||||..-.+. ..-+++.|+-.|-
T Consensus 337 D~tvEG~~~~~~p~fsvQfHPEa~pGP~Ds~~lF~~F~~~~~ 378 (383)
T CHL00197 337 DGTVAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEIMK 378 (383)
T ss_pred CCCCCCEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 896148698899878877488989898730889999999999
No 38
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.97 E-value=3.8e-30 Score=235.67 Aligned_cols=177 Identities=23% Similarity=0.367 Sum_probs=137.9
Q ss_pred CCEEEEEEC-CCCHHHHHHHHHHHCCCEEEEE-CCCCCHHHHHHCCCCEEEECCCCCCCCCCCC-CCCCHH------HHH
Q ss_conf 886999988-9705788998888659406985-2898988997239979999853889999999-753768------980
Q gi|254780414|r 7 SSKVLIIDF-GSQFTQLIARRVRESKVYCEVI-AFKNALDYFKEQNPQAIILSGSPASSLDIDS-PQIPKE------ILE 77 (520)
Q Consensus 7 ~~~IlIlDf-GSQytqLIaRriRelgVyseI~-P~~~~~e~i~~~~p~GIILSGGP~SV~d~~a-p~~~~~------I~~ 77 (520)
..+|||+-. -...--.|.+-+++.|+--+++ ++.-....-...+++|+|+.|||+||||++. |++..+ .++
T Consensus 2 mk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a~~ 81 (235)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLEVLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQRLA 81 (235)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 95399996899889869999999789959999678898899996667999993899898877668558999999999998
Q ss_pred CCCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECC---CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEC
Q ss_conf 8998899778999989970969998698661036675238---8622278726655336860022011012444211232
Q gi|254780414|r 78 SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKK---NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIAS 154 (520)
Q Consensus 78 ~~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~---~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~ 154 (520)
.++|+||||||+|+||+++||+|.++..+|+|+..+..+. .++++... +....|+++|+|.+ ++|+|++++|+
T Consensus 82 ~~~PvLGIClG~QLlA~AlGG~V~~~~~~EiG~~~v~~t~~~~~dpl~~~~---~~~~~v~~wH~D~~-~LP~ga~~LAs 157 (235)
T PRK07053 82 AGLPTLGICLGAQLIARALGARVYPGAQKEIGWAPLTLTDAGRASPLRHLD---GADTPVLHWHGDTF-DLPEGAILLAS 157 (235)
T ss_pred CCCCEEEECHHHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCHHCCC---CCCCEEEEEECEEE-ECCCCCEEEEC
T ss_conf 699889984738999997097786089960058877855123577000148---76772799954085-34998389982
Q ss_pred CCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 398317889863500112465212221520257799875
Q gi|254780414|r 155 SDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 155 S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|+.|+++||+..+ ++||+|||||++. .+++.++
T Consensus 158 s~~c~~Qaf~~g~-~~~g~QFHpE~t~-----~~v~~W~ 190 (235)
T PRK07053 158 TPACRNQAFAWGN-HVLALQFHPEIRA-----DRFEPWL 190 (235)
T ss_pred CCCCHHHHEEECC-CEEEEECCEECCH-----HHHHHHH
T ss_conf 8998589678479-6899965846888-----9999999
No 39
>PRK05665 amidotransferase; Provisional
Probab=99.97 E-value=1.8e-30 Score=238.07 Aligned_cols=209 Identities=23% Similarity=0.333 Sum_probs=148.0
Q ss_pred EEEEEECCC----------CHHHHHHHHHHHCCCEEEEECCCC----CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH-
Q ss_conf 699998897----------057889988886594069852898----98899723997999985388999999975376-
Q gi|254780414|r 9 KVLIIDFGS----------QFTQLIARRVRESKVYCEVIAFKN----ALDYFKEQNPQAIILSGSPASSLDIDSPQIPK- 73 (520)
Q Consensus 9 ~IlIlDfGS----------QytqLIaRriRelgVyseI~P~~~----~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~- 73 (520)
||+||..|. .|.....+-+++.+...++..|++ .+..+ .+++|+|++|||+||||+. ||+.+
T Consensus 4 ki~IL~~d~~~~~~~~~~g~y~~mF~~ll~~~~~~~~~~~~~v~~ge~P~~~--~~~dg~vITGS~~~vyd~~-pWi~~L 80 (240)
T PRK05665 4 RICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADD--EKFDAYLVTGSKADSFGTD-PWIQTL 80 (240)
T ss_pred EEEEEECCCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCH--HHCCEEEEECCCCCCCCCC-HHHHHH
T ss_conf 8999978999878997749988999999961899855999970068799897--7878999958987468996-769999
Q ss_pred -----HHHHCCCCEEEECHHHHHHHHHCCCEEEECCCC-CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCC
Q ss_conf -----898089988997789999899709699986986-61036675238862227872665533686002201101244
Q gi|254780414|r 74 -----EILESNIPLLGICYGQQIMCQSLGGKTKNSQSR-EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPE 147 (520)
Q Consensus 74 -----~I~~~~iPILGICyG~QlLa~~~GG~V~~~~~~-EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~ 147 (520)
++.+.++|+||||||||+||+++||+|++++.+ |.|...++++...+.+.+. ...+.+++||+|.|.++|+
T Consensus 81 ~~~i~~~~~~~~pilGICfGHQliA~ALGG~V~~~~~Gw~vG~~~~~~~~~~~~~~~~---~~~~~l~~~H~D~V~~lP~ 157 (240)
T PRK05665 81 KTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRYQLAAHAPWMSPA---VTELTLLISHQDQVTALPE 157 (240)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHHHCCEEEECCCCCEEEEEEEEECCCCCCCCCC---CCCCEEEEEECCEEEECCC
T ss_conf 9999999876999899944368888860983612799736667998875877433587---5640799772242785799
Q ss_pred CCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 42112323983178898635001124652122215202577998755010644111406789999999976504440366
Q gi|254780414|r 148 GFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVIC 227 (520)
Q Consensus 148 gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~ 227 (520)
|++++|+|+.|++++++..+ ++|++|||||.++ +.-..+|+.-- + .+ .++..++.++.+.
T Consensus 158 ga~~Lass~~cp~q~~~~~~-~~~~~Q~HPEf~~-~~~~~ll~~R~-~------~i-~~~~~~~a~~sl~---------- 217 (240)
T PRK05665 158 GATVIASSDFCPNAAYHIRD-QVLCFQGHPEFVH-DYSRALLDLRQ-E------HL-GEEVYSKGVASLA---------- 217 (240)
T ss_pred CEEEEEECCCCCHHHEECCC-CEEEEECCCCCCH-HHHHHHHHHHH-H------HC-CHHHHHHHHHHHC----------
T ss_conf 84899867998333426278-6899916968799-99999999977-6------36-9999999999706----------
Q ss_pred EECCCCHHHHHHHHHHHHC
Q ss_conf 4056404779999998622
Q gi|254780414|r 228 AVSGGVDSTVAAFLIYEAI 246 (520)
Q Consensus 228 ~lSGGVDStV~A~Ll~kAi 246 (520)
--.|..+.|..+-+-+
T Consensus 218 ---~~~D~~~~a~~i~~Fl 233 (240)
T PRK05665 218 ---HDHQGTLVAEWMMRFV 233 (240)
T ss_pred ---CCCCHHHHHHHHHHHH
T ss_conf ---8875899999999998
No 40
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=2.6e-30 Score=236.83 Aligned_cols=179 Identities=26% Similarity=0.468 Sum_probs=136.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCHHHHHCCCCEE
Q ss_conf 44886999988970578899888865940698528989889972399799998538899999-99753768980899889
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-DSPQIPKEILESNIPLL 83 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-~ap~~~~~I~~~~iPIL 83 (520)
....+|+++|||-+.+ |.|.+.+.|+...++|++++++++.+.+|+||+||+||....+- ......++++ .++|||
T Consensus 165 ~~~~~V~viD~GvK~n--Ilr~L~~rg~~V~VvP~~~~~~~i~~~~pDGiflSNGPGDP~~~~~~i~~vr~l~-~~~Pif 241 (356)
T PRK12838 165 NGGKHVALIDFGLKHS--ILRSLSKRGCNVTVLPYNASLEDIKNLNPDGIVLSNGPGDPKELQPYLPTIKDLA-SSYPIL 241 (356)
T ss_pred CCCEEEEEEECCCHHH--HHHHHHHCCCEEEEECCCCCCCHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEE
T ss_conf 9975799995883699--9999997898899989988754023249748994389989688788999999997-498889
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEE---ECCCHHH--CCC-CCCCEEECCC-
Q ss_conf 97789999899709699986986610366752388622278726655336860---0220110--124-4421123239-
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWM---SHGDQVE--HIP-EGFEVIASSD- 156 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~Vwm---SH~D~V~--~lP-~gf~viA~S~- 156 (520)
|||+|||+||.++|+++.|.+.+..|. +.|..+ + .+-.||+ .||++|. .+| .+++++..+-
T Consensus 242 GICLGHQllalA~Gakt~KmkfGHrG~-------NhPV~~-~----~tgkv~ITSQNHGyaVd~~sl~~~~~~vt~~nln 309 (356)
T PRK12838 242 GICLGHQLIALALGAETYKLPFGHRGA-------NHPVID-L----ATGRVWMTSQNHGYVVDEDSIDEKQLSVTFFNLN 309 (356)
T ss_pred EECHHHHHHHHHHCCEEEECCCCCCCC-------CCCCEE-C----CCCCEEEEECCCCCEECCCCCCCCCEEEEEECCC
T ss_conf 974889999997097486415566887-------826477-6----8994899726876167767689886599999089
Q ss_pred CCCEEEEEECCCCEEEEEEEEHHHCCCH-HHHHHHHHHHHHCC
Q ss_conf 8317889863500112465212221520-25779987550106
Q gi|254780414|r 157 STPFAFIADEKRKYYAVQFHPEVVHTVG-GSQLIDNFVHHVAG 198 (520)
Q Consensus 157 ~~~iaai~~~~~~iyGVQFHPEV~hT~~-G~~iL~NFl~~Ic~ 198 (520)
++.+++|+|+++|+|+||||||..-.+. ..-+++.|+-.|-.
T Consensus 310 D~tveGi~~~~~p~fsVQfHPEa~PGP~D~~~lF~~F~~~~~~ 352 (356)
T PRK12838 310 DGSIEGLRHKKLPVLSVQFHPEAHPGPHDAEYIFDEFLEMMGE 352 (356)
T ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9966107988998688712889998987438899999999998
No 41
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.96 E-value=3.6e-29 Score=228.73 Aligned_cols=160 Identities=22% Similarity=0.432 Sum_probs=123.7
Q ss_pred HHCCCCEEEECCCCCCCCCCC-CCCC------------CHHHHHCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEE
Q ss_conf 723997999985388999999-9753------------768980899889977899998997096999869866103667
Q gi|254780414|r 47 KEQNPQAIILSGSPASSLDID-SPQI------------PKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFI 113 (520)
Q Consensus 47 ~~~~p~GIILSGGP~SV~d~~-ap~~------------~~~I~~~~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I 113 (520)
...+++|+|++|||.+|.|+. .++. .+++.+.++|+||||||||+||.++||+|.+....|+|...+
T Consensus 48 dL~~ydgvivgGsp~~vsd~~~~~~~~q~~~e~~l~~Ll~~~~~~~~P~LGiC~G~Qlla~alGG~V~~~~~~e~G~~~i 127 (242)
T PRK07567 48 DLDDFSGVIVGGSPFNVSDPAYSKSPTQRRVEAELSGLLDEVVARDFPFLGCCYGVGTLGHHLGGVVDRTHGEPVGATTV 127 (242)
T ss_pred CHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCEEECCCCCEEEEEEE
T ss_conf 83000789994889756785445646888999999999999984699889985638999997298882799870779999
Q ss_pred EECC---CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHH
Q ss_conf 5238---8622278726655336860022011012444211232398317889863500112465212221520257799
Q gi|254780414|r 114 EIKK---NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLID 190 (520)
Q Consensus 114 ~i~~---~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~ 190 (520)
.++. .+++|.++ +..+.+|++|+|.|.++|+|++++|+|+.|++++++..+ ++||+|||||++ ..+ +.
T Consensus 128 ~lt~~g~~Dpl~~~l---p~~f~a~~~H~d~V~~LP~ga~lLA~s~~cpvqafr~g~-~~y~~QFHPE~d--~~~---~~ 198 (242)
T PRK07567 128 TLTDAGRRDPLTADL---PDTFTAFTGHKEAVVALPPGAVLLATGPTCPVQMFRAGE-NVYATQFHPELD--ADG---LK 198 (242)
T ss_pred EECCCCCCCCCCCCC---CCCEEEEEECCCEEEECCCCCEEEECCCCCCHHEEEECC-CEEEEECCCCCC--HHH---HH
T ss_conf 981456779110179---844179986164137689984899849998236189379-789992484079--999---99
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 875501064411140678999999997
Q gi|254780414|r 191 NFVHHVAGIQDNWVMSSYHKEIVSRIK 217 (520)
Q Consensus 191 NFl~~Ic~~~~~W~~~~~~~~~i~~Ir 217 (520)
+-+ ++-+=..-+.++. .+..+...+
T Consensus 199 ~ri-~~y~~~gy~~~~~-~~~~~~~~~ 223 (242)
T PRK07567 199 NRI-DFYKDYGYFSPED-ADELIARLR 223 (242)
T ss_pred HHH-HHHHHCCCCCHHH-HHHHHHHHH
T ss_conf 999-9998758888788-999998630
No 42
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.96 E-value=3.4e-28 Score=221.76 Aligned_cols=176 Identities=23% Similarity=0.371 Sum_probs=134.0
Q ss_pred CCCCEEEEEECCC-CHHHHHHHHHHHCCCEEEEE-CCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHH------H
Q ss_conf 4488699998897-05788998888659406985-289-8988997239979999853889999999753768------9
Q gi|254780414|r 5 ERSSKVLIIDFGS-QFTQLIARRVRESKVYCEVI-AFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKE------I 75 (520)
Q Consensus 5 ~~~~~IlIlDfGS-QytqLIaRriRelgVyseI~-P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~------I 75 (520)
....+||||-.-. .-.-+|...+++.|+-..++ |+. .++.+ ...+++|+|+.|||+||+|+. |++..+ .
T Consensus 9 ~~~k~vLviqH~~~e~pG~i~~~L~~~G~~~~i~r~~~gd~lP~-~l~~~dglvVlGGpmsa~D~~-p~l~~e~~~I~~~ 86 (243)
T PRK06490 9 RDKRPILIVLHQERSTPGRVGQLLRERGYPLDIRRPRLGDPLPE-TLEDHAGAVIFGGPMSANDPD-DFIRREIDWISVP 86 (243)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCCCEEEEECCCCCCCCCC-CHHHHHHHHHHHH
T ss_conf 78985799966899997299999997898589996789998999-754605899928999989987-1799999999999
Q ss_pred HHCCCCEEEECHHHHHHHHHCCCEEEECCC--CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEE
Q ss_conf 808998899778999989970969998698--661036675238862227872665533686002201101244421123
Q gi|254780414|r 76 LESNIPLLGICYGQQIMCQSLGGKTKNSQS--REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA 153 (520)
Q Consensus 76 ~~~~iPILGICyG~QlLa~~~GG~V~~~~~--~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA 153 (520)
++.++|+||||||+|+||+++||+|.+.+. .|.|+.++..+.....+.+. ...|++.|+|.++ +|+|++++|
T Consensus 87 l~~~~P~LGICLGaQLlA~alGg~V~~~~~g~~EiG~~~i~~t~~g~~~~~~-----p~~v~~wH~e~f~-LP~gA~lLA 160 (243)
T PRK06490 87 LKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTEAGRALMPW-----PEMVYHWHREGFD-LPKGAELLA 160 (243)
T ss_pred HHCCCCEEEECHHHHHHHHHHCCEEECCCCCCCCCCCEEEEECCCCCCCCCC-----CCEEEEEECCCCC-CCCCCEEEE
T ss_conf 9869988998884999999839888448888775785235677453234589-----7836786243200-699958987
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf 23983178898635001124652122215202577998755
Q gi|254780414|r 154 SSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 154 ~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
+|+.|+++||+.. .++||+||||||+. .|+++++.
T Consensus 161 ~s~~c~~QAFr~G-~~a~g~QFHpEvt~-----~~i~~W~~ 195 (243)
T PRK06490 161 TGDDFPNQAFRYG-DNAWGLQFHPEVTR-----AMMHRWTV 195 (243)
T ss_pred CCCCCCHHHEEEC-CCEEEEECCEECCH-----HHHHHHHH
T ss_conf 8999836828976-94899954847878-----99999995
No 43
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.96 E-value=2e-28 Score=223.36 Aligned_cols=174 Identities=21% Similarity=0.327 Sum_probs=132.3
Q ss_pred EEEEEECCC-CHHHHHHHHHHHCCCEEEEE-CCCCC-HHHHHHCCCCEEEECCCCCCCCC--CCCCCCC--------HHH
Q ss_conf 699998897-05788998888659406985-28989-88997239979999853889999--9997537--------689
Q gi|254780414|r 9 KVLIIDFGS-QFTQLIARRVRESKVYCEVI-AFKNA-LDYFKEQNPQAIILSGSPASSLD--IDSPQIP--------KEI 75 (520)
Q Consensus 9 ~IlIlDfGS-QytqLIaRriRelgVyseI~-P~~~~-~e~i~~~~p~GIILSGGP~SV~d--~~ap~~~--------~~I 75 (520)
||+|+-.-. .-.-.|..-+++.|+...++ ++... +.. ...+++|+|+.|||+|+++ +..|++. +..
T Consensus 2 rilviqH~~~E~pG~i~~~l~~~G~~~~~~~~~~g~~lP~-~~~~~d~liVlGGpms~~~~~e~~p~l~l~~E~~lir~a 80 (235)
T PRK08250 2 RVHFIIHESFESPGAYLKWAEDRGYTISWSRVYAGEALPE-NADGFDMLIVLGGPQSPRTTREECPYFDSKAEQHLINQA 80 (235)
T ss_pred EEEEEECCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7999981899897078999997899699996689998999-810258899978998777732127874709999999999
Q ss_pred HHCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECC---CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEE
Q ss_conf 808998899778999989970969998698661036675238---86222787266553368600220110124442112
Q gi|254780414|r 76 LESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKK---NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVI 152 (520)
Q Consensus 76 ~~~~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~---~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~vi 152 (520)
.+.++|+||||||+|+||+++||+|.+++.+|+|+..+..+. .+++|.++ +....|+..|+| +..+|+|++++
T Consensus 81 ~~~~~PvlGIClG~QliA~AlGg~V~~~~~~EiG~~~i~~t~~~~~d~~~~~~---~~~~~v~~wH~d-~~~LP~gA~lL 156 (235)
T PRK08250 81 ITARKAVVGVCLGSQLIGEALGAKYCQSPEKEIGHFPITLTEAGLRDPLLKHF---GSTLTVGHWHND-MPGLTDQATVL 156 (235)
T ss_pred HHCCCCEEEEEHHHHHHHHHCCCEEECCCCCEEEEEEEEEECCCCCCHHHHCC---CCCCEEEEEEEE-EEECCCCCEEE
T ss_conf 98699889981677999998098775489982448971630144458466528---987657898523-62069996799
Q ss_pred ECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 32398317889863500112465212221520257799875
Q gi|254780414|r 153 ASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 153 A~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|+|+.|+++|++..+ ++||+|||||++. +++++++
T Consensus 157 Ass~~c~~Qaf~~g~-~~~g~QfHpE~t~-----~~v~~wi 191 (235)
T PRK08250 157 ATSEGCPRQIVQYGN-LVYGFQCHMEFTV-----EAVEGLI 191 (235)
T ss_pred ECCCCCHHHHEEECC-CEEEEECCEECCH-----HHHHHHH
T ss_conf 739998489588269-5899971037899-----9999999
No 44
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.96 E-value=5.7e-28 Score=220.14 Aligned_cols=181 Identities=25% Similarity=0.394 Sum_probs=134.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCC-CCCCCCCHHHHHCCCCEE
Q ss_conf 4488699998897057889988886594069852898988997239979999853889999-999753768980899889
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLD-IDSPQIPKEILESNIPLL 83 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap~~~~~I~~~~iPIL 83 (520)
+...+|+++|||.+.+ |.|.+-+.|+...++|++++++++.+.+|+||+||+||...-. +.+...-+++++..+|+|
T Consensus 177 ~~~~~Vv~iD~GvK~n--Ilr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPif 254 (368)
T COG0505 177 EPGKHVVVIDFGVKRN--ILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIF 254 (368)
T ss_pred CCCCEEEEEECCCCHH--HHHHHHHCCCEEEEECCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 7776799997673177--99999977984999769899999985189979974899880677899999999864689837
Q ss_pred EECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--CCCCCCCEEECCC-CCCE
Q ss_conf 977899998997096999869866103667523886222787266553368600220110--1244421123239-8317
Q gi|254780414|r 84 GICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSD-STPF 160 (520)
Q Consensus 84 GICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~lP~gf~viA~S~-~~~i 160 (520)
|||+|||+||.++|++..|.+-+..|. +.+.-+ +. .+.....=+.||++|. ++++.++++..+- ++.+
T Consensus 255 GICLGHQllalA~Ga~T~KmkFGHrG~-------NhPV~d-l~-tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTv 325 (368)
T COG0505 255 GICLGHQLLALALGAKTYKMKFGHRGA-------NHPVKD-LD-TGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTV 325 (368)
T ss_pred EECHHHHHHHHHCCCCEEECCCCCCCC-------CCCCCC-CC-CCEEEEEECCCCEECCHHHCCCCCEEEEEECCCCCC
T ss_conf 886888999986678643203688778-------967631-65-880899946886013822327776058981799970
Q ss_pred EEEEECCCCEEEEEEEEHHHCCCHHHH-HHHHHHHHH
Q ss_conf 889863500112465212221520257-799875501
Q gi|254780414|r 161 AFIADEKRKYYAVQFHPEVVHTVGGSQ-LIDNFVHHV 196 (520)
Q Consensus 161 aai~~~~~~iyGVQFHPEV~hT~~G~~-iL~NFl~~I 196 (520)
++++|+++|+|.||||||-+-.++-.. ++..|+-.+
T Consensus 326 EGi~h~~~P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~ 362 (368)
T COG0505 326 EGIRHKDLPAFSVQYHPEASPGPHDTRYLFDEFIELM 362 (368)
T ss_pred CCEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 0245279863787148999989864477999999999
No 45
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase; InterPro: IPR006221 This entry presents the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. ; GO: 0004049 anthranilate synthase activity, 0008152 metabolic process.
Probab=99.96 E-value=2.5e-28 Score=222.62 Aligned_cols=186 Identities=26% Similarity=0.387 Sum_probs=146.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHCC-----CEEE-EECCC-CCHHHHHHCCC-----CEEEECCCCCCCCCCCCC-CCCHHH
Q ss_conf 69999889705788998888659-----4069-85289-89889972399-----799998538899999997-537689
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESK-----VYCE-VIAFK-NALDYFKEQNP-----QAIILSGSPASSLDIDSP-QIPKEI 75 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelg-----Vyse-I~P~~-~~~e~i~~~~p-----~GIILSGGP~SV~d~~ap-~~~~~I 75 (520)
.||.+|.=-.||-.+.|.+.|+| |... |...+ .+..+|....| ++|++|.||.+..+..-- .+--++
T Consensus 1 ~vL~IDnYDSFTYNlv~~~~~~gdisPGv~~V~Vkrnd~~~~~~ie~L~P~~~lfdaivisPGPC~P~eAa~~~Gii~~~ 80 (212)
T TIGR00566 1 MVLLIDNYDSFTYNLVQYFEELGDISPGVAEVVVKRNDSLTLQEIEALLPLLPLFDAIVISPGPCTPNEAAISMGIILEA 80 (212)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCHHHHHHH
T ss_conf 92456567423789999864217767361057772067310345876311356334567658656832122041179999
Q ss_pred H---HCCC---CEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCC--CCCCEEEEEECCCHH--HCC
Q ss_conf 8---0899---88997789999899709699986986610366752388622278726--655336860022011--012
Q gi|254780414|r 76 L---ESNI---PLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE--KGSKQQVWMSHGDQV--EHI 145 (520)
Q Consensus 76 ~---~~~i---PILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~--~~~~~~VwmSH~D~V--~~l 145 (520)
+ ..++ ||||||+|||.||+++||.|.++..-.||++.---.+...+|.|+++ -+..+.+=.+|+..| +.|
T Consensus 81 i~h~aGkldevPILGvCLG~QA~~qA~Gg~V~~a~~~~HGk~s~i~hng~~~f~GL~~GyPP~~L~~TRYHSL~V~p~~l 160 (212)
T TIGR00566 81 IRHFAGKLDEVPILGVCLGHQALAQAFGGDVVRANTVMHGKTSEIEHNGAGIFRGLFNGYPPDTLTATRYHSLVVEPETL 160 (212)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 87423762267602010556878874287225421136873001247771012465577686644357505566744577
Q ss_pred CCCCCEEECCCCC--CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf 4442112323983--178898635001124652122215202577998755
Q gi|254780414|r 146 PEGFEVIASSDST--PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 146 P~gf~viA~S~~~--~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
|.-|.++|.++.. .++||+|++++++|||||||+..|++|.+||+|||.
T Consensus 161 ~~~~~~~~~~~~~G~eiM~irh~~~p~eGVQFHPESilSe~G~~ll~Nfl~ 211 (212)
T TIGR00566 161 PTCFQVTALEEENGIEIMAIRHRDLPLEGVQFHPESILSELGHQLLANFLH 211 (212)
T ss_pred CCCCCEEEEECCCCCEEEHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHC
T ss_conf 622010100016870131013347850220107135534227899998723
No 46
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=99.95 E-value=8.3e-27 Score=211.82 Aligned_cols=196 Identities=25% Similarity=0.434 Sum_probs=163.3
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCE
Q ss_conf 63448869999889705788998888659406985289898899723997999985388999999975376898089988
Q gi|254780414|r 3 KRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPL 82 (520)
Q Consensus 3 ~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPI 82 (520)
.-+...+||.+|---.|-|.+|..+|.-|.-..-+.+...-+.+....||=|+||.||....|=+--.--++....++||
T Consensus 520 dGq~G~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~~ae~~fd~~rPDLVVLSPGPGrP~dFdv~~Ti~aa~ar~lP~ 599 (726)
T TIGR01815 520 DGQEGKRILLVDHEDSFVHTLANYLRQTGASVTTLRHSFAEELFDEERPDLVVLSPGPGRPKDFDVKETIKAALARDLPV 599 (726)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 86258779998547543777788876348755304304789997327998898687312387544788999999728985
Q ss_pred EEECHHHHHHHHHCCCEEEECCCCCCCEE-EEEECCC-CCCCCCCCCCCCCEEEEEECCCHH--HCCCCCCCEEECCCCC
Q ss_conf 99778999989970969998698661036-6752388-622278726655336860022011--0124442112323983
Q gi|254780414|r 83 LGICYGQQIMCQSLGGKTKNSQSREFGRA-FIEIKKN-CSLLKGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDST 158 (520)
Q Consensus 83 LGICyG~QlLa~~~GG~V~~~~~~EyG~~-~I~i~~~-~~lf~gl~~~~~~~~VwmSH~D~V--~~lP~gf~viA~S~~~ 158 (520)
||+|+|.|-|+.+|||.........||++ .|.+... +.+|.|+ +...+|=-+|+--- .+||.+|+|+|.|+|+
T Consensus 600 FGVCLGLQg~vEafGG~L~vL~~P~HGK~srirVl~p~s~~F~gL---pe~~TVGRYHSlfA~~~rLP~el~vTA~s~Dg 676 (726)
T TIGR01815 600 FGVCLGLQGLVEAFGGELDVLAIPVHGKASRIRVLEPDSVLFAGL---PEELTVGRYHSLFARSDRLPKELKVTAESEDG 676 (726)
T ss_pred EEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEECCC---CCCEEEEEEEEEEECCCCCCCCCEEEEEECCC
T ss_conf 774134689998746721357888788633688836875787278---97034300376755645687423787850687
Q ss_pred CEEEEEECCCCEEEEEEEEHHHCCC---HHHHHHHHHHHHHCCCCC
Q ss_conf 1788986350011246521222152---025779987550106441
Q gi|254780414|r 159 PFAFIADEKRKYYAVQFHPEVVHTV---GGSQLIDNFVHHVAGIQD 201 (520)
Q Consensus 159 ~iaai~~~~~~iyGVQFHPEV~hT~---~G~~iL~NFl~~Ic~~~~ 201 (520)
.|+||+|...|+=+||||||+..|- -|..||+|-+-+.++-.+
T Consensus 677 ~iMaiEH~~lP~AAVQFHPESImtL~G~aGl~mi~NVv~~la~~a~ 722 (726)
T TIGR01815 677 VIMAIEHRKLPVAAVQFHPESIMTLDGDAGLAMIENVVDKLAKSAK 722 (726)
T ss_pred EEEEEECCCCCCCEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 1732024768711251176110005604689999999999733102
No 47
>PRK13180 consensus
Probab=99.95 E-value=6.9e-27 Score=212.36 Aligned_cols=176 Identities=22% Similarity=0.363 Sum_probs=127.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCCC-----CCCCCCCCCHHHHHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985-38899-----999997537689808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPASS-----LDIDSPQIPKEILESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~SV-----~d~~ap~~~~~I~~~~iP 81 (520)
.+|.|+|||+++.+.+.|++|++|+.+++. ...+++. +.+++||.| |..+- .+.+....-.+..+.++|
T Consensus 2 kkI~IiDyg~gNi~Sv~~al~~~g~~~~i~---~~~~~~~--~~d~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~gkp 76 (209)
T PRK13180 2 KRVVVLDYGSGNLRSAQRALERVGAEVEVT---ADPDAAL--NADGLVVPGVGAFAACMAGLRAVGGDRIIGERLAAGRP 76 (209)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 779999789438999999999869989997---9999995--38968999988557777765536919999999976998
Q ss_pred EEEECHHHHHHHHH---C----------CCEEEECC---CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHC-
Q ss_conf 89977899998997---0----------96999869---8661036675238862227872665533686002201101-
Q gi|254780414|r 82 LLGICYGQQIMCQS---L----------GGKTKNSQ---SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH- 144 (520)
Q Consensus 82 ILGICyG~QlLa~~---~----------GG~V~~~~---~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~- 144 (520)
+||||+|||+|+.. . .|+|++.+ .++.||..+...+++.+|+++.. ...+|+.|++.+..
T Consensus 77 iLGIClGMQlL~~~s~E~g~~~~GLg~i~G~v~~l~~~~vPh~GWn~v~~~~~~~l~~~i~~---~~~fYFvHSy~v~~~ 153 (209)
T PRK13180 77 VLGICVGMQILFERGVEHGVETEGCGEWPGTVERLDAPVLPHMGWNTVEAPAGSVLFAGLDA---DERFYFVHSYAAQRW 153 (209)
T ss_pred EEEEEEHEEEEEECEECCCCCCCCCCEECCEEEECCCCCCCCCCCEEEECCCCCHHHHCCCC---CCCEEEECEEEECCC
T ss_conf 79984120888703111676778813655089977888787356557770677635408885---895889685266345
Q ss_pred ----CC-CCCCEEECCC--CCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf ----24-4421123239--83178898635001124652122215202577998755
Q gi|254780414|r 145 ----IP-EGFEVIASSD--STPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 145 ----lP-~gf~viA~S~--~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
.+ .....+|.+. ...++++++ .++||+|||||.++ ..|.++|+||+-
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~~~aav~~--~ni~G~QFHPEKS~-~~Gl~ll~nFl~ 207 (209)
T PRK13180 154 EGSPDPRTAPPLVTWATHGAPFVAAVEN--GPLSATQFHPEKSG-DAGAALLRNWVD 207 (209)
T ss_pred CCCCCCCCCCCEEEEEECCCEEEEEEEC--CCEEEEECCCCCCC-HHHHHHHHHHHH
T ss_conf 6555656655358998479826999982--99999939963267-738999999986
No 48
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=9.3e-27 Score=211.46 Aligned_cols=177 Identities=23% Similarity=0.391 Sum_probs=129.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CC-CCCCCCCCCHHH---HHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985-388-99-999997537689---808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SS-LDIDSPQIPKEI---LESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV-~d~~ap~~~~~I---~~~~iP 81 (520)
.+|.|+|+|++..+.+.|.++.++..++++-. .+.+++. +.+.+||.| |.. ++ ..-........+ .+.+.|
T Consensus 2 ~kI~IiDyg~gNi~Sv~~al~~~~~~~~i~i~-~~~~~i~--~~d~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~~kp 78 (208)
T PRK13146 2 MSVAIIDYGSGNLRSAARALERAAPGADVTVT-ADPDAVR--AADRLVLPGVGAFADCMRGLRAVGGLREAVEEAAAGRP 78 (208)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 88999937955899999999985799739996-9999984--28878983889779999987640768999999983998
Q ss_pred EEEECHHHHHHHHH------------CCCEEEECCC-------CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 89977899998997------------0969998698-------6610366752388622278726655336860022011
Q gi|254780414|r 82 LLGICYGQQIMCQS------------LGGKTKNSQS-------REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV 142 (520)
Q Consensus 82 ILGICyG~QlLa~~------------~GG~V~~~~~-------~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V 142 (520)
+||||+|||+|+.. +.|+|++... +..||..+...+++++|+++.+ ....|+.|++++
T Consensus 79 iLGICLGmQlL~~~s~E~g~~~GLgli~G~V~kl~~~~~~~kiPhiGWn~i~~~~~~~l~~~i~~---~~~fYFvHSY~~ 155 (208)
T PRK13146 79 FLGICVGMQLLFERGEEHGDTPGLGWIPGDVVRLQPDGPALKVPHMGWNTVDQPRDHPLFDGIPD---GARFYFVHSYAA 155 (208)
T ss_pred EEEEEEEEEEEECCCEECCCCCCCEEECCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC---CCEEEEEEEEEE
T ss_conf 79888546412112400686570118741899998788666574425277885689820047887---887999731375
Q ss_pred HCCCCCCCEEECCCC-CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 012444211232398-317889863500112465212221520257799875
Q gi|254780414|r 143 EHIPEGFEVIASSDS-TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 143 ~~lP~gf~viA~S~~-~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.. .+...++|.|+. ..+.|+.. ..++||+|||||.+| ..|.++|+||+
T Consensus 156 ~~-~~~~~~~a~t~yg~~~~a~v~-~~ni~G~QFHPEKS~-~~Gl~llknFl 204 (208)
T PRK13146 156 AP-ANPADVLAWTDYGGPFTAAVA-RGNLFATQFHPEKSG-DAGLRLLRNFL 204 (208)
T ss_pred EC-CCCHHEEEEEECCCEEEEEEE-CCCEEEEECCCCCCC-HHHHHHHHHHH
T ss_conf 31-882100899638987999998-399999989930056-83899999986
No 49
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=2.2e-26 Score=208.83 Aligned_cols=171 Identities=22% Similarity=0.359 Sum_probs=127.3
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC-----CCCCCC-CCCCHHHHHCCCCE
Q ss_conf 9999889705788998888659406985289898899723997999985-3889-----999999-75376898089988
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS-----SLDIDS-PQIPKEILESNIPL 82 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S-----V~d~~a-p~~~~~I~~~~iPI 82 (520)
|.|+|||+++.+.++|.++.+|+.+++. .+.+++. +.+++||.| |..+ ..+.+- ..+.+.+++.+.|+
T Consensus 2 I~IiDyg~gNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~~~~~~pi 76 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIA---KNPKDLQ--KADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPI 76 (201)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCE
T ss_conf 9999559427999999999869988997---8999996--5895898288849999987775185889999998769966
Q ss_pred EEECHHHHHHHHH------------CCCEEEEC------CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHC
Q ss_conf 9977899998997------------09699986------98661036675238862227872665533686002201101
Q gi|254780414|r 83 LGICYGQQIMCQS------------LGGKTKNS------QSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH 144 (520)
Q Consensus 83 LGICyG~QlLa~~------------~GG~V~~~------~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~ 144 (520)
||||+|||+|+.. +.|+|.+- +.+..||..++..+++++|+++. ....+|+.|++++.
T Consensus 77 LGIClGmQlL~~~s~E~~~~~GLg~i~G~v~kl~~~~~~kvPhiGWn~v~~~~~~~l~~~~~---~~~~fYF~HSy~v~- 152 (201)
T PRK13152 77 LGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSPLYQGIP---NKSDFYFVHSFYVK- 152 (201)
T ss_pred EEEEHHHEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHCCCC---CCCEEEEEEEEEEC-
T ss_conf 99852134621042437863655899769998677767666632258986034797563887---66719997200623-
Q ss_pred CCCCCCEEECCCC--CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 2444211232398--317889863500112465212221520257799875
Q gi|254780414|r 145 IPEGFEVIASSDS--TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 145 lP~gf~viA~S~~--~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.++ -.++|.++. ..+|+++ ..++||+|||||.+ .+.|.++|+||+
T Consensus 153 ~~~-~~~~~~~~yg~~~~aav~--~~Ni~G~QFHPEKS-~~~Gl~lLknFl 199 (201)
T PRK13152 153 CKD-EFVSAKAQYGHKFVASLQ--KDHIFATQFHPEKS-QNLGLKLLENFL 199 (201)
T ss_pred CCC-CCEEEEEECCCEEEEEEE--ECCEEEEECCCCCC-CHHHHHHHHHHH
T ss_conf 688-748999984998999998--49999991894116-775899999997
No 50
>PRK13153 consensus
Probab=99.94 E-value=8.8e-26 Score=204.48 Aligned_cols=171 Identities=21% Similarity=0.386 Sum_probs=128.2
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC-CCC-CCCCCCCHH---HHHCCCCEE
Q ss_conf 9999889705788998888659406985289898899723997999985-3889-999-999753768---980899889
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS-SLD-IDSPQIPKE---ILESNIPLL 83 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S-V~d-~~ap~~~~~---I~~~~iPIL 83 (520)
|.|+|||++..+.+.|.++.+|+.++|.. +.+++.. .+.|||.| |..+ +.. -....++.. ..+.+.|+|
T Consensus 2 I~IiDyg~gNi~Sv~~al~~lg~~~~ii~---~~~~i~~--~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~~~g~piL 76 (203)
T PRK13153 2 IGIIDYNAGNLASVINAFEKIGAKARLES---DPSKLKE--YDKLILPGVGAFGDAMEHLKSNGMDEAIKEFAKSGKPFL 76 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHHH--CCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEE
T ss_conf 99996693289999999998699889976---9999965--893898788834889997775375788999987599689
Q ss_pred EECHHHHHHHHH------------CCCEEEECCCC---------CCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 977899998997------------09699986986---------610366752388622278726655336860022011
Q gi|254780414|r 84 GICYGQQIMCQS------------LGGKTKNSQSR---------EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV 142 (520)
Q Consensus 84 GICyG~QlLa~~------------~GG~V~~~~~~---------EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V 142 (520)
|||+|||+|+.. +.|+|.+.+.. ..||..+...+++++++++.+ ...+|..|++++
T Consensus 77 GIClGmQlL~~~s~E~g~~~GLgli~G~V~~l~~~~~~~~~kiPhiGWn~i~~~~~~~~~~~~~~---~~~~YF~HSy~~ 153 (203)
T PRK13153 77 GICLGMQLLFEKSYEFGEHEGLGLIEGEVVKFDESKFDEPLKVPHMGWNRLEFKKETPLFRGLPE---SFYLYFVHSYHA 153 (203)
T ss_pred EEEHHHHHCCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHEECCCCCHHHCCCCC---CCEEEEEEEEEC
T ss_conf 98555342004759067568884887789986722235566787343554103456866607776---873999910342
Q ss_pred HCCCCCCCEEECCCCC--CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 0124442112323983--17889863500112465212221520257799875
Q gi|254780414|r 143 EHIPEGFEVIASSDST--PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 143 ~~lP~gf~viA~S~~~--~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.|++-.++|.++.+ .+++++. .++||+|||||.++ +.|.++|+||+
T Consensus 154 --~~~~~~~~~~~~~g~~~~aai~~--~Ni~G~QFHPEKS~-~~Gl~llknFl 201 (203)
T PRK13153 154 --VCDDKDVLGKTTYGYEFVSAVQH--DNVFGFQPHPEKSH-DNGLKILKNFV 201 (203)
T ss_pred --CCCCCCEEEEECCCCEEEEEEEE--CCEEEEECCCCCCC-HHHHHHHHHHH
T ss_conf --56876899995599868999982--99999928944077-85999999996
No 51
>PRK13176 consensus
Probab=99.93 E-value=6.9e-26 Score=205.23 Aligned_cols=179 Identities=25% Similarity=0.400 Sum_probs=129.3
Q ss_pred EEEEEECCC----CHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCC---C-CCCCH----HHH
Q ss_conf 699998897----05788998888659406985289898899723997999985388999999---9-75376----898
Q gi|254780414|r 9 KVLIIDFGS----QFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID---S-PQIPK----EIL 76 (520)
Q Consensus 9 ~IlIlDfGS----QytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~---a-p~~~~----~I~ 76 (520)
||.|+|||+ +.++.+.|..++.++.+++.- ....+.+ .+++.|||.|-.+....-. + ..+.. .+.
T Consensus 2 kI~IIDyg~GNi~Sv~~al~~~g~~~~i~~~i~~-~~~~~~~--~~~~~lILPGVGsf~~~m~~L~~~~g~~~~i~~~~~ 78 (216)
T PRK13176 2 RVAIIDYGSGNLHSATKAFERAAREAGIAAEIDV-TSDPDRV--ARADRIVLPGVGAFADCRRGLDAVDGMVEALTEAVE 78 (216)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE-ECCHHHH--HCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8999906983799999999998764388960999-7899998--379979989987789999987762772899999999
Q ss_pred HCCCCEEEECHHHHHHHHH------------CCCEEEECC-------CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 0899889977899998997------------096999869-------866103667523886222787266553368600
Q gi|254780414|r 77 ESNIPLLGICYGQQIMCQS------------LGGKTKNSQ-------SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMS 137 (520)
Q Consensus 77 ~~~iPILGICyG~QlLa~~------------~GG~V~~~~-------~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmS 137 (520)
+.+.||||||+|||+|+.. +.|+|++-. ....||..+...+++++|+++........+|..
T Consensus 79 ~~~~piLGIClGmQlL~~~s~E~~~~~GLgli~G~V~kl~~~~~~~kvPh~GWn~v~~~~~~~~~~~i~~~~~~~~fYFv 158 (216)
T PRK13176 79 KKARPFLGICVGMQLMATRGLEKTVTDGLGWIAGDVVEITPSDPSLKIPHMGWNTLDVKRPHPVFDGIPTGDKGLHAYFV 158 (216)
T ss_pred HCCCCEEEEEHHHEEHHHCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEECHHHEEECCCCHHHCCCCCCCCCCEEEEE
T ss_conf 76995799853121265368678886733067249999478886764864167786867886777387778887358999
Q ss_pred CCCHHHCCCCCCCEEECCC-CCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 2201101244421123239-8317889863500112465212221520257799875
Q gi|254780414|r 138 HGDQVEHIPEGFEVIASSD-STPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 138 H~D~V~~lP~gf~viA~S~-~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|++++...+ ...++|.|+ +.++.|+-.. .++||+|||||.+|. .|.+||+||+
T Consensus 159 HSY~~~~~~-~~~~~a~t~yg~~f~a~v~k-~Ni~G~QFHPEKS~~-~Gl~ll~nFl 212 (216)
T PRK13176 159 HSYHLAAAN-EADVLAHADYGGPVTAIVGR-DTMVGTQFHPEKSQR-LGLALIANFL 212 (216)
T ss_pred EEEEEECCC-CCCEEEEEECCCEEEEEEEE-CCEEEECCCCCCCCH-HHHHHHHHHH
T ss_conf 756760488-47799999759989999983-999999099310278-4999999985
No 52
>PRK13178 consensus
Probab=99.93 E-value=2.7e-25 Score=201.00 Aligned_cols=175 Identities=23% Similarity=0.381 Sum_probs=129.8
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCH---HHHHCCCCEE
Q ss_conf 999988970578899888865940698528989889972399799998538899999---9975376---8980899889
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI---DSPQIPK---EILESNIPLL 83 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~---~ap~~~~---~I~~~~iPIL 83 (520)
|.|||+|+..-+.+.|.++.+|+.+.|. .+.+++. +.+++||.|..+.-..- .+-.++. +..+.+.|+|
T Consensus 2 I~IiDyg~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~~~gkpiL 76 (213)
T PRK13178 2 LAILDYKAGNQTSVRRALNHLGIPCVIT---ADPEVIQ--GAAGIIFPGVGAAGQAMNELRTTGLDEVLREQVQAGKPLL 76 (213)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEE
T ss_conf 9999659308999999999869998997---7999994--3998998998856999998750062899998743699579
Q ss_pred EECHHHHHHHHH-----------CCCEEEECC------------CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 977899998997-----------096999869------------866103667523886222787266553368600220
Q gi|254780414|r 84 GICYGQQIMCQS-----------LGGKTKNSQ------------SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGD 140 (520)
Q Consensus 84 GICyG~QlLa~~-----------~GG~V~~~~------------~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D 140 (520)
|||+|||+|... +.|+|++.+ .+..||..+...+++++|+++.. ...+|..|++
T Consensus 77 GIClGmQlLf~~seE~~~~GLgli~G~v~~l~~~~~~~~~~~~kvPhiGWn~i~~~~~~~l~~~~~~---~~~fYFvHSY 153 (213)
T PRK13178 77 GICVGCQIMLDYSQENDTKCLGIIPGECRLFNPALTDEDGAPIRVPHMGWNSVVQRRPCPLFKGIEP---EAEFYFVHSY 153 (213)
T ss_pred EEEHHHEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC---CCEEEEEEEE
T ss_conf 9842455554144245422467561069988854344347775677212212771799852245677---7879998689
Q ss_pred HHHCCCCCCCEEECCCCCC--EEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 1101244421123239831--788986350011246521222152025779987550106
Q gi|254780414|r 141 QVEHIPEGFEVIASSDSTP--FAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAG 198 (520)
Q Consensus 141 ~V~~lP~gf~viA~S~~~~--iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~ 198 (520)
.+ .|+...++|.|..+. ++++ ...++||+|||||.+ .+.|.+||+||+ +.|.
T Consensus 154 ~~--~~~~~~~ia~t~yg~~f~a~v--~k~Ni~G~QFHPEKS-g~~Gl~lLknF~-~~~~ 207 (213)
T PRK13178 154 FP--APPEEYVIATTTYGIEFCSAH--GGPGLWAVQFHPEKS-GRPGLRLLANFH-RYCT 207 (213)
T ss_pred EE--CCCCCCEEEEEECCCEEEEEE--EECCEEEEECCCCCC-CHHHHHHHHHHH-HHHH
T ss_conf 85--389864899997899799999--809999991995316-886999999999-9987
No 53
>PRK13174 consensus
Probab=99.93 E-value=5.7e-25 Score=198.69 Aligned_cols=176 Identities=20% Similarity=0.349 Sum_probs=126.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCCCC-C-CCCCCCCHHH--HHCCCCE
Q ss_conf 869999889705788998888659406985289898899723997999985-388999-9-9997537689--8089988
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPASSL-D-IDSPQIPKEI--LESNIPL 82 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~SV~-d-~~ap~~~~~I--~~~~iPI 82 (520)
.+|.|||||+...+.+.|.++.+|+.+.++. .+.+++. +.+.|||.| |..+.. + -....++..+ +..+.|+
T Consensus 2 k~I~IiDyG~gNi~Sv~~al~~~g~~~~~i~--~~~~~i~--~~d~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~~kpi 77 (212)
T PRK13174 2 QTVAVIDYGMGNLHSVAKALEHVGAGRVLVT--SDAAVIR--EADRVVFPGVGAIRDCMAEIRRLGFDSLVREVSQDRPF 77 (212)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEC--CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCE
T ss_conf 8899995881079999999997499879983--8989996--38979965888689999998876969999999749987
Q ss_pred EEECHHHHHHHHH------------CCCEEEEC-----------CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9977899998997------------09699986-----------986610366752388622278726655336860022
Q gi|254780414|r 83 LGICYGQQIMCQS------------LGGKTKNS-----------QSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG 139 (520)
Q Consensus 83 LGICyG~QlLa~~------------~GG~V~~~-----------~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~ 139 (520)
||||+|||+|+.. +.|+|.+. +.+..|+..+....+++++.++.+ ...+|+.|+
T Consensus 78 LGICLGMQlL~~~s~E~g~~~GLgli~G~V~~~~~~~~~~~~~~kiPhiGWn~i~~~~~~~l~~~~~~---~~~fYFvHS 154 (212)
T PRK13174 78 LGICVGMQALLERSEENGGVDCIGLFPGQVRFFGKDLHEDGEHLKVPHMGWNQVSQAVDHPLWHDIPD---LARFYFVHS 154 (212)
T ss_pred EEEEHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEECCEEEEECCCCCHHCCCCC---CCEEEEEEE
T ss_conf 99808899876175478987753363507998675556555455675500124760688812106776---575998756
Q ss_pred CHHHCCCCCCCEEECCCC-CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 011012444211232398-317889863500112465212221520257799875
Q gi|254780414|r 140 DQVEHIPEGFEVIASSDS-TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 140 D~V~~lP~gf~viA~S~~-~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
+++. ..+...++|.+.. ..+.|.-. +.++||+|||||.++ ..|.++|+||+
T Consensus 155 Y~~~-~~~~~~~~a~t~~g~~f~a~v~-k~Ni~G~QFHPEKS~-~~Gl~lLknFi 206 (212)
T PRK13174 155 YYIE-AGNPRQVVGRGHYGVDFAAALA-DGSRFAVQFHPEKSH-THGLQLLQNFA 206 (212)
T ss_pred EEEC-CCCHHCEEEEEECCCEEEEEEE-ECCEEEECCCCCCCC-HHHHHHHHHHH
T ss_conf 6752-6982038999989988999998-499999908910057-75899999998
No 54
>KOG0026 consensus
Probab=99.93 E-value=2.1e-24 Score=194.56 Aligned_cols=194 Identities=24% Similarity=0.415 Sum_probs=151.4
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHH-HHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHH--HHCC
Q ss_conf 344886999988970578899888-8659406985289-89889972399799998538899999997537689--8089
Q gi|254780414|r 4 RERSSKVLIIDFGSQFTQLIARRV-RESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEI--LESN 79 (520)
Q Consensus 4 ~~~~~~IlIlDfGSQytqLIaRri-RelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I--~~~~ 79 (520)
+..+..|+++|.=..+|-.....+ -|++...+++..| .+.++++.+||.++++|.||....|.+. ....| |...
T Consensus 15 ~~~n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~DsGI--s~~~i~~f~~~ 92 (223)
T KOG0026 15 SKQNGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGI--SLQTVLELGPL 92 (223)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCEEECCCCCCCCCCCC--HHHHHHHHCCC
T ss_conf 6566878998455513489999863125871799846731178886259880785699989764542--48999985787
Q ss_pred CCEEEECHHHHHHHHHCCCEEEECC-CCCCCEEE-EEECC--CCCCCCCCCCCCCCEEEEEECCCHH--HCCC-CCCCEE
Q ss_conf 9889977899998997096999869-86610366-75238--8622278726655336860022011--0124-442112
Q gi|254780414|r 80 IPLLGICYGQQIMCQSLGGKTKNSQ-SREFGRAF-IEIKK--NCSLLKGMWEKGSKQQVWMSHGDQV--EHIP-EGFEVI 152 (520)
Q Consensus 80 iPILGICyG~QlLa~~~GG~V~~~~-~~EyG~~~-I~i~~--~~~lf~gl~~~~~~~~VwmSH~D~V--~~lP-~gf~vi 152 (520)
+|+||||.|.|.|..+|||+|.++. .--+|+.. ++-+. ...+|+|++ ..+.|-..|+... +++| +.++++
T Consensus 93 iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~~~~G~f~g~~---q~~~V~RYHSLa~~~sSlP~d~L~VT 169 (223)
T KOG0026 93 VPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLS---NPFIVGRYHSLVIEKDSFPSDELEVT 169 (223)
T ss_pred CCEEEEEECHHHHHHHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCCCCC---CCEEEEEEEEEEECCCCCCHHHEEEE
T ss_conf 855656400344456528576305752462453332237754332102799---87277765440001356871030456
Q ss_pred ECCCCCCEEEEEECCCC-EEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 32398317889863500-112465212221520257799875501064411140
Q gi|254780414|r 153 ASSDSTPFAFIADEKRK-YYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVM 205 (520)
Q Consensus 153 A~S~~~~iaai~~~~~~-iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~ 205 (520)
|+|+|+.+++.+|+++. +-|||||||+..|+.|+.+++||+ ++. .++|.-
T Consensus 170 awTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNfl-ni~--~~tWeE 220 (223)
T KOG0026 170 AWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI-KIV--EKKWSE 220 (223)
T ss_pred EECCCCEEEEEECCCCEECCCEEECCHHHHHHHHHHHHHHHH-HHC--CCCCCC
T ss_conf 641385788741233100232232607764466589999998-753--361102
No 55
>PRK13177 consensus
Probab=99.92 E-value=3.1e-24 Score=193.39 Aligned_cols=173 Identities=21% Similarity=0.379 Sum_probs=121.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC-C----CC--CCCCCCCHHHHHC
Q ss_conf 8869999889705788998888659406985289898899723997999985-3889-9----99--9997537689808
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS-S----LD--IDSPQIPKEILES 78 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S-V----~d--~~ap~~~~~I~~~ 78 (520)
..+|.|+|||+...+.+.|.++.+|..+.++. .+.+++. +.+.|||.| |..+ + .+ ...+.+...+.+.
T Consensus 2 ~~~I~IiDyg~GNi~Sv~~al~~~g~~~~~i~--~~~~~i~--~~d~lIlPGVGsF~~~m~~Lk~~~~~~~~i~~~~~~~ 77 (207)
T PRK13177 2 ASTIALIDYGAGNLRSVHNALKAAGAEGVVVT--ADPDEVR--RADRVVLPGVGAFAACMGGLRAIPGMVEAMEERVLEG 77 (207)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEE--CCHHHHH--CCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 99899991893279999999998299828995--8999983--5997998997878999977641044489999999976
Q ss_pred CCCEEEECHHHHHHHHH------------CCCEEEECCC-------CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 99889977899998997------------0969998698-------6610366752388622278726655336860022
Q gi|254780414|r 79 NIPLLGICYGQQIMCQS------------LGGKTKNSQS-------REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG 139 (520)
Q Consensus 79 ~iPILGICyG~QlLa~~------------~GG~V~~~~~-------~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~ 139 (520)
+.|+||||+|||+|+.. +.|+|.+... +.-||..+...+++..+ . ....+|+.|+
T Consensus 78 ~~piLGICLGmQlLf~~s~E~g~~~GLgli~G~V~~l~~~~~~~kiPh~GWn~v~~~~~~~~~---~---~~~~~YFvHS 151 (207)
T PRK13177 78 GAPFLGICVGMQLLADRGEEHGVTPGLGWIGGEVRLIEPADPSCKVPHMGWNDVAPTTGSHPL---I---RPGEAYFLHS 151 (207)
T ss_pred CCCEEEECHHHHHHHHCCCCCCCCCCCCEECCEEEEECCCCCCCCCCEEEEHEEEECCCCCCC---C---CCCCEEEEEE
T ss_conf 995699818788576576078877754554536898168887775876440102544667766---7---7784578988
Q ss_pred CHHHCCCCCCCEEECCCCC-C-EEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 0110124442112323983-1-7889863500112465212221520257799875
Q gi|254780414|r 140 DQVEHIPEGFEVIASSDST-P-FAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 140 D~V~~lP~gf~viA~S~~~-~-iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
+++. ..+...++|.|+.+ . +|+++ ..++||+|||||.++ ..|.++|+||+
T Consensus 152 Y~~~-~~~~~~i~~~t~y~~~~~a~v~--k~Ni~G~QFHPEKS~-~~Gl~lLknFl 203 (207)
T PRK13177 152 YHFV-PDDGAHVLATTDHGGGITAAVA--RDNIVGVQFHPEKSQ-AYGLALLARFL 203 (207)
T ss_pred EEEE-CCCCCCEEEEECCCCEEEEEEE--ECCEEEEECCCCCCC-HHHHHHHHHHH
T ss_conf 8985-3897416899737998999999--599999939920067-86899999987
No 56
>PRK13171 consensus
Probab=99.92 E-value=6e-24 Score=191.37 Aligned_cols=175 Identities=23% Similarity=0.396 Sum_probs=128.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC--CCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 869999889705788998888659406985289898899723997999985-3889--9999997537689808998899
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS--SLDIDSPQIPKEILESNIPLLG 84 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S--V~d~~ap~~~~~I~~~~iPILG 84 (520)
.+|.|+|+|...-+.+.+.++.+|+.++|.. +.+++. +.+++||.| |..+ ...-....+...+.+.++|+||
T Consensus 2 ~~I~IiDyg~gNi~Sv~~al~~lg~~~~ii~---~~~~i~--~~~~lIlPGVGsf~~~m~~L~~~~~~~~i~~~~~piLG 76 (200)
T PRK13171 2 TDVALIDAGGANLGSVRYALERLGVEARVVR---DAAGLQ--GAQRVILPGVGAAPEAMARLRAQGLIEPLRELQVPLIG 76 (200)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC---CHHHHH--CCCEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCEEE
T ss_conf 8799996895179999999998499879978---999995--29989989988789999999872126789864997355
Q ss_pred ECHHHHHHHHH-----------CCCEEEECC------CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCC
Q ss_conf 77899998997-----------096999869------8661036675238862227872665533686002201101244
Q gi|254780414|r 85 ICYGQQIMCQS-----------LGGKTKNSQ------SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPE 147 (520)
Q Consensus 85 ICyG~QlLa~~-----------~GG~V~~~~------~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~ 147 (520)
||+|||+|+.. +.|+|++.. .+..||..+...+++++++++.+ ....|..|++.+. .
T Consensus 77 IClGmQlLf~~SeEg~~~GLgli~G~V~kl~~~~~~~vPh~GWn~i~~~~~~~~~~~~~~---~~~fYFvHSY~~~---~ 150 (200)
T PRK13171 77 ICLGMQLLFEHSEEGDVECLGLLPGIVRHMTPALGIRVPHMGWNRLVPMRDSALLAGLPE---RASAYFVHGYAAP---V 150 (200)
T ss_pred EEHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCCCEEEEEEEECCCCCHHHCCCCC---CCCEEEECCCCCC---C
T ss_conf 607657540354379976616770189986777678683642434533678876729987---9819998296117---8
Q ss_pred CCCEEECCCCC-CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 42112323983-17889863500112465212221520257799875501
Q gi|254780414|r 148 GFEVIASSDST-PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 148 gf~viA~S~~~-~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
.-..++.++.+ .+.|+. ...+++|+|||||-+ .+.|.++|+||+ ++
T Consensus 151 ~~~~i~~~~~~~~f~a~v-~~~ni~G~QFHPEKS-~~~Gl~ll~nF~-~l 197 (200)
T PRK13171 151 TADTVAACDHGGLFTAIV-QNGLRCGAQFHPERS-ADTGARILRNFL-EM 197 (200)
T ss_pred CCCEEEEECCCCEEEEEE-ECCCEEEECCCCCCC-CHHHHHHHHHHH-HH
T ss_conf 887899942798499999-819989980894326-675799999998-54
No 57
>KOG0370 consensus
Probab=99.92 E-value=2.7e-24 Score=193.86 Aligned_cols=231 Identities=23% Similarity=0.424 Sum_probs=166.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCC---CHHHHHCCCC
Q ss_conf 4488699998897057889988886594069852898988997239979999853889999999753---7689808998
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQI---PKEILESNIP 81 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~---~~~I~~~~iP 81 (520)
.+.-+|+++|+|..|+|+ |++-..|+.-.++||+.+++.. +|+||+||+||.+.-- .|.+ -.++++.++|
T Consensus 170 Gk~~~I~aiDcG~K~N~I--RcL~~RGa~vtVvPw~~~i~~~---~yDGlflSNGPGdPe~--~~~~v~~vr~lL~~~~P 242 (1435)
T KOG0370 170 GKSLRILAIDCGLKYNQI--RCLVKRGAEVTVVPWDYPIAKE---EYDGLFLSNGPGDPEL--CPLLVQNVRELLESNVP 242 (1435)
T ss_pred CCCCEEEECCCCCHHHHH--HHHHHHCCEEEEECCCCCCCCC---CCCEEEEECCCCCCHH--HHHHHHHHHHHHHCCCC
T ss_conf 864179973567418999--9999849569990377622012---5561797279999056--58999999999827998
Q ss_pred EEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEE---ECCCHHH--CCCCCCCEEECCC
Q ss_conf 8997789999899709699986986610366752388622278726655336860---0220110--1244421123239
Q gi|254780414|r 82 LLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWM---SHGDQVE--HIPEGFEVIASSD 156 (520)
Q Consensus 82 ILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~Vwm---SH~D~V~--~lP~gf~viA~S~ 156 (520)
++|||+|||++|.+.|++..+.+.+..|+.. +.... .+-++++ .|++.|. .+|.||+.+-.+.
T Consensus 243 vfGIClGHQllA~AaGakT~KmKyGNRGhNi-------P~~~~-----~tGrc~ITSQNHGYAVD~~tLp~gWk~lFvN~ 310 (1435)
T KOG0370 243 VFGICLGHQLLALAAGAKTYKMKYGNRGHNI-------PCTCR-----ATGRCFITSQNHGYAVDPATLPAGWKPLFVNA 310 (1435)
T ss_pred EEEEEHHHHHHHHHHCCCEEEEECCCCCCCC-------CCEEC-----CCCEEEEEECCCCEEECCCCCCCCCCHHEEEC
T ss_conf 5897366699998608744886315567774-------62200-----37659998157761534532457770320413
Q ss_pred -CCCEEEEEECCCCEEEEEEEEHHHCCCHHHH-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-
Q ss_conf -8317889863500112465212221520257-7998755010644111406789999999976504440366405640-
Q gi|254780414|r 157 -STPFAFIADEKRKYYAVQFHPEVVHTVGGSQ-LIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGV- 233 (520)
Q Consensus 157 -~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~-iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGV- 233 (520)
++..++|.|..+|+|.+|||||.+-++.... ++..|++.+-+.+.+=+.+-++.. ....-..+.-+||+..-|||.
T Consensus 311 NDgSNEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~-~~~~~~~~~~~kVlvlGSGGLs 389 (1435)
T KOG0370 311 NDGSNEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITE-PAKAAPRVEVKKVLVLGSGGLS 389 (1435)
T ss_pred CCCCCCEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCCEEEEECCCCCC
T ss_conf 567773376279872116307867899751399999999998887417854443345-5544442235179998158733
Q ss_pred -------HHHHHHHHHHHHCC-CCEEEEEECC
Q ss_conf -------47799999986223-6569999738
Q gi|254780414|r 234 -------DSTVAAFLIYEAIG-INLTCVLVDH 257 (520)
Q Consensus 234 -------DStV~A~Ll~kAig-~~l~~vfVD~ 257 (520)
|-|-.-++ ||+. ++.+-|+|+-
T Consensus 390 IGQAGEFDYSGsQAi--KAlkEe~i~TiLiNP 419 (1435)
T KOG0370 390 IGQAGEFDYSGSQAI--KALKEENIFTILINP 419 (1435)
T ss_pred CCCCCEEEEEHHHHH--HHHHHCCCEEEEECC
T ss_conf 212403554078898--765532617999789
No 58
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.91 E-value=4.2e-24 Score=192.45 Aligned_cols=169 Identities=25% Similarity=0.409 Sum_probs=125.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC-----CCCCCCHHHHHCCCCEE
Q ss_conf 6999988970578899888865940698528989889972399799998538899999-----99753768980899889
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-----DSPQIPKEILESNIPLL 83 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~-----~ap~~~~~I~~~~iPIL 83 (520)
+|.|+|||+..-+.+.|.++.+|+.++|. .+.+++. +.+.|||.|= .| ++. ..-.+...|.+.+.|+|
T Consensus 2 kI~IiDyG~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lILPGV-Gs-F~~am~~L~~~~l~~~i~~~~kpiL 74 (196)
T PRK13170 2 NVVIIDTGCANLSSVKFAFERLGYNPVVS---RDPDVIL--AADKLFLPGV-GT-AQAAMDQLRERELIELIKACTQPVL 74 (196)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCC-CC-HHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89999279558999999999879979996---7989984--3897997189-98-8999999987356899997089748
Q ss_pred EECHHHHHHHHH---------CC---CEEEECCC-----CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCC
Q ss_conf 977899998997---------09---69998698-----66103667523886222787266553368600220110124
Q gi|254780414|r 84 GICYGQQIMCQS---------LG---GKTKNSQS-----REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIP 146 (520)
Q Consensus 84 GICyG~QlLa~~---------~G---G~V~~~~~-----~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP 146 (520)
|||+|||+|+.. +| |+|++.+. +.-||..+...+++++|+++.+ ...+|..|++++. |
T Consensus 75 GICLGMQlL~~~S~E~g~~~GLgli~G~V~kl~~~~~~vPhiGWn~i~~~~~~~l~~~i~~---~~~fYFvHSY~~~--~ 149 (196)
T PRK13170 75 GICLGMQLLGRRSEESGGVDCLGIIDGDVPKLTDFGLPLPHMGWNQVTPQAGHPLFQGIED---GSYFYFVHSYAMP--V 149 (196)
T ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHCCCCC---CCEEEEEEEEEEC--C
T ss_conf 8880031346355368986600054229999776788774421488873589876649885---8879998778706--8
Q ss_pred CCCCEEECCCCC-CE-EEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 442112323983-17-889863500112465212221520257799875
Q gi|254780414|r 147 EGFEVIASSDST-PF-AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 147 ~gf~viA~S~~~-~i-aai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.+ ..+|.|+.+ .+ ++++ ..++||+|||||.+ .+.|.++|+||+
T Consensus 150 ~~-~~ia~t~yg~~f~s~v~--~~Ni~G~QFHPEKS-~~~Gl~lLknFl 194 (196)
T PRK13170 150 NP-YTIAQCNYGEPFSAAIQ--KDNFYGVQFHPERS-GAAGAQLLKNFL 194 (196)
T ss_pred CC-CEEEEEECCCEEEEEEE--ECCEEEEECCCCCC-CHHHHHHHHHHH
T ss_conf 88-88999978998999997--19999996892006-784899999996
No 59
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.91 E-value=1.3e-22 Score=181.77 Aligned_cols=196 Identities=17% Similarity=0.264 Sum_probs=132.0
Q ss_pred CCCCCCCCEEEEEE----CCCCH----HHHHHHHHHHCCCEEEEECCC-CCHHHHHH--CCCCEEEECCCCCCC----CC
Q ss_conf 98634488699998----89705----788998888659406985289-89889972--399799998538899----99
Q gi|254780414|r 1 MHKRERSSKVLIID----FGSQF----TQLIARRVRESKVYCEVIAFK-NALDYFKE--QNPQAIILSGSPASS----LD 65 (520)
Q Consensus 1 m~~~~~~~~IlIlD----fGSQy----tqLIaRriRelgVyseI~P~~-~~~e~i~~--~~p~GIILSGGP~SV----~d 65 (520)
|.+-.+++-|-|.- +..+. .+--.+.|.+.|--..++|+. ...+.+.. ...+|++|||||..| |.
T Consensus 1 m~~~M~kPiIGIt~~~~~~~g~~~~~v~~~Y~~ai~~aGgiPvllP~~~~~~~~~~~~l~~lDGllltGG~~Di~P~~Yg 80 (254)
T PRK11366 1 MENIMNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYG 80 (254)
T ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCCHHHCC
T ss_conf 97767999899938864547865768889999999982985898488878878999999878989968998988942368
Q ss_pred CC--CCCCC-----------HHHHHCCCCEEEECHHHHHHHHHCCCEEEEC--------CCCC---------CC-EEEEE
Q ss_conf 99--97537-----------6898089988997789999899709699986--------9866---------10-36675
Q gi|254780414|r 66 ID--SPQIP-----------KEILESNIPLLGICYGQQIMCQSLGGKTKNS--------QSRE---------FG-RAFIE 114 (520)
Q Consensus 66 ~~--ap~~~-----------~~I~~~~iPILGICyG~QlLa~~~GG~V~~~--------~~~E---------yG-~~~I~ 114 (520)
++ .|..+ +..++.++||||||.|||+|+.++||++..- .+++ |. ...+.
T Consensus 81 e~~~~~~~dp~RD~~E~~L~~~A~~~~~PiLGICRG~Q~lNVa~GGtL~qdl~~~~~~~~H~~~~~~~~~~~~~~~H~V~ 160 (254)
T PRK11366 81 ENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQ 160 (254)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 89888888842129999999999985999798603558999873886442200376523445688898543325641189
Q ss_pred ECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEEEECCCCE-EEEEEEEHHHCCCH--HHHHHHH
Q ss_conf 23886222787266553368600220110124442112323983178898635001-12465212221520--2577998
Q gi|254780414|r 115 IKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKY-YAVQFHPEVVHTVG--GSQLIDN 191 (520)
Q Consensus 115 i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~~~~~~i-yGVQFHPEV~hT~~--G~~iL~N 191 (520)
+...+.|.+ +........|...|+..|.++++||++.|+++++.|+||++.+.++ .|||||||....+. ...||+.
T Consensus 161 i~~~s~L~~-i~~~~~~~~VNS~HhQav~~lg~gl~v~A~a~DG~IEAie~~~~~f~lGVQWHPE~~~~~~~~~~~LF~a 239 (254)
T PRK11366 161 VEEGGLLSA-LLPECSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEG 239 (254)
T ss_pred ECCCCCHHH-HHCCCCCEEEECHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 868986999-7489870587421354331337773899990899779999579985899970887787678678999999
Q ss_pred HHHHHCC
Q ss_conf 7550106
Q gi|254780414|r 192 FVHHVAG 198 (520)
Q Consensus 192 Fl~~Ic~ 198 (520)
|+ +-|+
T Consensus 240 Fv-~a~r 245 (254)
T PRK11366 240 FI-TACQ 245 (254)
T ss_pred HH-HHHH
T ss_conf 99-9999
No 60
>pfam07722 Peptidase_C26 Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.
Probab=99.90 E-value=5.4e-23 Score=184.56 Aligned_cols=153 Identities=18% Similarity=0.320 Sum_probs=111.3
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHH--CCCCEEEECCCCCCC----CCCCC-C-----CCC---------HHHHHCCCCE
Q ss_conf 9888865940698528989889972--399799998538899----99999-7-----537---------6898089988
Q gi|254780414|r 24 ARRVRESKVYCEVIAFKNALDYFKE--QNPQAIILSGSPASS----LDIDS-P-----QIP---------KEILESNIPL 82 (520)
Q Consensus 24 aRriRelgVyseI~P~~~~~e~i~~--~~p~GIILSGGP~SV----~d~~a-p-----~~~---------~~I~~~~iPI 82 (520)
.+.|+..|.-..++|++.+.+.+.. ...+||+|+||+..+ |.+.. + ... +..++.++||
T Consensus 30 v~~i~~aGg~pv~iP~~~~~~~~~~~l~~~dGlll~GG~~di~P~~yg~~~~~~~~~~~~~Rd~~e~~l~~~a~~~~~Pi 109 (219)
T pfam07722 30 VKAVEGAGGLPVLLPILEDPEDLEALLDLVDGLLLTGGQSNVDPSLYGEEPSPSGGYYDPARDAFELALIRAALERGKPI 109 (219)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999859999997899998999999976798998598876782214677686678757888999999999998769987
Q ss_pred EEECHHHHHHHHHCCCEEEEC--------------CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCC
Q ss_conf 997789999899709699986--------------986610366752388622278726655336860022011012444
Q gi|254780414|r 83 LGICYGQQIMCQSLGGKTKNS--------------QSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEG 148 (520)
Q Consensus 83 LGICyG~QlLa~~~GG~V~~~--------------~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~g 148 (520)
||||+|||+|+.++||++... ..+.+....+.+.+++.+.+ +.. .....|+..|++.|.+++++
T Consensus 110 lGICrG~Qllnv~~GGtL~q~i~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~-~~~-~~~~~vnS~Hhq~I~~l~~~ 187 (219)
T pfam07722 110 LGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLAR-LLG-AEEILVNSLHHQAIKRLAPG 187 (219)
T ss_pred EEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHH-HHC-CCCEEEECCHHHHHHCCCCC
T ss_conf 9976508999999678300023012575445668876425603899778973998-729-98457974506577404898
Q ss_pred CCEEECCCCCCEEEEEECCCC--EEEEEEEEH
Q ss_conf 211232398317889863500--112465212
Q gi|254780414|r 149 FEVIASSDSTPFAFIADEKRK--YYAVQFHPE 178 (520)
Q Consensus 149 f~viA~S~~~~iaai~~~~~~--iyGVQFHPE 178 (520)
|+++|+++++.++||++.+.+ ++|||||||
T Consensus 188 l~v~A~a~Dg~iEaie~~~~~~f~~GVQwHPE 219 (219)
T pfam07722 188 LRVEATAPDGTIEAIESPNAPYFVLGVQWHPE 219 (219)
T ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEECCC
T ss_conf 58999948997899996699986799972889
No 61
>PRK13148 consensus
Probab=99.89 E-value=2.7e-22 Score=179.53 Aligned_cols=180 Identities=19% Similarity=0.366 Sum_probs=124.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC-CCC-CCCCCCCHHH--HHCCCCE
Q ss_conf 869999889705788998888659406985289898899723997999985-3889-999-9997537689--8089988
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS-SLD-IDSPQIPKEI--LESNIPL 82 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S-V~d-~~ap~~~~~I--~~~~iPI 82 (520)
.+|.|+|||.---+.+.|.++.+|.-+++.-. ...+++. +.+.|||.| |..+ +.+ -..-.++..+ ...+.|+
T Consensus 2 ~~I~IIDyg~GNl~Sv~~al~~~g~~~~~~i~-~~~~~i~--~~d~lILPGVGsF~~am~~L~~~~l~~~i~~~~~~kpi 78 (225)
T PRK13148 2 STIAIVDYGMGNFHSVARALQHAAPDADIRIC-NRPEQID--AADRVVFPGQGAMPDCMRTLNESGLRAAVERAAASKPL 78 (225)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE-CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCE
T ss_conf 87999979944999999999985789739998-9999995--49979989978879999998864879999998638986
Q ss_pred EEECHHHHHHHHHC-----------CCEEEEC--------------------------CCCCCCEEEEEECCCCCCCCCC
Q ss_conf 99778999989970-----------9699986--------------------------9866103667523886222787
Q gi|254780414|r 83 LGICYGQQIMCQSL-----------GGKTKNS--------------------------QSREFGRAFIEIKKNCSLLKGM 125 (520)
Q Consensus 83 LGICyG~QlLa~~~-----------GG~V~~~--------------------------~~~EyG~~~I~i~~~~~lf~gl 125 (520)
||||+|||+|+..- -|+|.+- +...-||..+...+.+.+|+++
T Consensus 79 LGICLGMQlLf~~SeEg~~~GLgli~G~V~kl~~~~~~~~~~~~~~~~~~~~~~~~~lkiPh~GWn~v~~~~~~~l~~~i 158 (225)
T PRK13148 79 MGVCVGEQMLFERSEEGDTPCLGIFPGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGWNQVRQTRSHALWEGI 158 (225)
T ss_pred EEEEHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCHHCCC
T ss_conf 99827788766245226977565587899981476545642112333455544354888888861203778997121266
Q ss_pred CCCCCCEEEEEECCCHHHCCCCCCCEEECCCCC-C-EEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 266553368600220110124442112323983-1-78898635001124652122215202577998755010644111
Q gi|254780414|r 126 WEKGSKQQVWMSHGDQVEHIPEGFEVIASSDST-P-FAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNW 203 (520)
Q Consensus 126 ~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~-~-iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W 203 (520)
.+....+.| |++++. .-+...++|.|+.+ . +++++. .++||+|||||-+ ...|.+||+||+ +|
T Consensus 159 ~~~~~fYFv---HSY~~~-~~~~~~~~a~t~yg~~f~s~v~~--~Ni~G~QFHPEKS-~~~Gl~lLknFl--------~w 223 (225)
T PRK13148 159 PDGTHFYFV---HSYYAA-PSDPALTTGVTDYGVAFTCAVAA--ANIFAVQFHPEKS-AEHGLRLYRNFV--------DW 223 (225)
T ss_pred CCCCEEEEE---EEEEEC-CCCCCCEEEEEECCCEEEEEEEE--CCEEEEECCHHHH-CHHHHHHHHHHH--------CC
T ss_conf 778706887---545631-68815589998589989999996--9999990881231-577999999987--------67
Q ss_pred CC
Q ss_conf 40
Q gi|254780414|r 204 VM 205 (520)
Q Consensus 204 ~~ 205 (520)
++
T Consensus 224 ~p 225 (225)
T PRK13148 224 QP 225 (225)
T ss_pred CC
T ss_conf 99
No 62
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.89 E-value=9.8e-22 Score=175.57 Aligned_cols=175 Identities=25% Similarity=0.380 Sum_probs=124.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC-CCCC-CCCCCCHHHHH---CCCC
Q ss_conf 869999889705788998888659406985289898899723997999985-3889-9999-99753768980---8998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS-SLDI-DSPQIPKEILE---SNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S-V~d~-~ap~~~~~I~~---~~iP 81 (520)
.+|+|+|||+-.-+.+.|.++.+|....|. .+.+++.. .++|||.| |... +.+. ..-.+...+.+ .++|
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs---~d~~~i~~--AD~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP 76 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVS---RDPEEILK--ADKLILPGVGAFGAAMANLRERGLIEAIKEAVESGKP 76 (204)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEE---CCHHHHHH--CCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 789999728635999999999759806981---69889710--8887866978889999988863669999999755997
Q ss_pred EEEECHHHHHHHHH------------CCCEEEECCC-----CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHC
Q ss_conf 89977899998997------------0969998698-----661036675238862227872665533686002201101
Q gi|254780414|r 82 LLGICYGQQIMCQS------------LGGKTKNSQS-----REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH 144 (520)
Q Consensus 82 ILGICyG~QlLa~~------------~GG~V~~~~~-----~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~ 144 (520)
+||||+|||+|... +.|+|.+.+. ..-||..+...+++++|+|+.+....+.| |++++.-
T Consensus 77 ~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~YFV---HSY~~~~ 153 (204)
T COG0118 77 FLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYFV---HSYYVPP 153 (204)
T ss_pred EEEEEHHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCEEEEE---EEEEECC
T ss_conf 7998175777664154368988702130168876888887886665223126787443289988779999---7876157
Q ss_pred CCCCCCEEECCCCC-CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 24442112323983-17889863500112465212221520257799875
Q gi|254780414|r 145 IPEGFEVIASSDST-PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 145 lP~gf~viA~S~~~-~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.+.-.++|.++.+ ++.|.-.++ ++||+|||||-+ +..|.+||+||+
T Consensus 154 -~~~~~v~~~~~YG~~f~AaV~k~-N~~g~QFHPEKS-g~~Gl~lL~NFl 200 (204)
T COG0118 154 -GNPETVVATTDYGEPFPAAVAKD-NVFGTQFHPEKS-GKAGLKLLKNFL 200 (204)
T ss_pred -CCCCEEEEECCCCCEEEEEEEEC-CEEEEECCCCCC-HHHHHHHHHHHH
T ss_conf -99861888646898358999708-899992386311-387899999998
No 63
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=174.85 Aligned_cols=172 Identities=19% Similarity=0.282 Sum_probs=123.9
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHH--CCCCEEEECCCCCCC----CCCCC--------CCCC-------HHHHHCCCCE
Q ss_conf 9888865940698528989889972--399799998538899----99999--------7537-------6898089988
Q gi|254780414|r 24 ARRVRESKVYCEVIAFKNALDYFKE--QNPQAIILSGSPASS----LDIDS--------PQIP-------KEILESNIPL 82 (520)
Q Consensus 24 aRriRelgVyseI~P~~~~~e~i~~--~~p~GIILSGGP~SV----~d~~a--------p~~~-------~~I~~~~iPI 82 (520)
.+.+...|....++|.-...+.+.. ...+|+||||| ++| |.++. |.-| ++.++.++||
T Consensus 32 v~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPI 110 (243)
T COG2071 32 VDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPI 110 (243)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEECCC-CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 99999769950885488877789999865367895289-86898783988885567788430077899999999769988
Q ss_pred EEECHHHHHHHHHCCCEEEEC--------C-----CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCC
Q ss_conf 997789999899709699986--------9-----866103667523886222787266553368600220110124442
Q gi|254780414|r 83 LGICYGQQIMCQSLGGKTKNS--------Q-----SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGF 149 (520)
Q Consensus 83 LGICyG~QlLa~~~GG~V~~~--------~-----~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf 149 (520)
||||+|+|+|+.+|||+..+- + ...++...+.+..++.|.+-+ .... ..|..-|..++.++.++|
T Consensus 111 LgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~-g~~~-~~VNS~HhQaIk~La~~L 188 (243)
T COG2071 111 LGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKIL-GESE-FMVNSFHHQAIKKLAPGL 188 (243)
T ss_pred EEECCCHHHHHHHHCCEEEHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHC-CCCC-EEECCHHHHHHHHHCCCC
T ss_conf 99840157887875675302123054500256999865431579954784177753-7652-263151778999767886
Q ss_pred CEEECCCCCCEEEEEECC-CCEEEEEEEEHHHCCC--HHHHHHHHHHHHHCCC
Q ss_conf 112323983178898635-0011246521222152--0257799875501064
Q gi|254780414|r 150 EVIASSDSTPFAFIADEK-RKYYAVQFHPEVVHTV--GGSQLIDNFVHHVAGI 199 (520)
Q Consensus 150 ~viA~S~~~~iaai~~~~-~~iyGVQFHPEV~hT~--~G~~iL~NFl~~Ic~~ 199 (520)
++.|.++++.|+|+++++ ..+.|||||||-.-.+ .-.+|++.|+ +.|+-
T Consensus 189 ~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~-~~~~~ 240 (243)
T COG2071 189 VVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFV-NACKK 240 (243)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHH-HHHHH
T ss_conf 79999799958989853885079986175552267868899999999-99875
No 64
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.88 E-value=1.4e-21 Score=174.38 Aligned_cols=145 Identities=23% Similarity=0.380 Sum_probs=107.4
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHH--HCCCCEEEECCCCCC---CCCCC-C-------CC-------CCHHHHHCCC
Q ss_conf 889988886594069852898988997--239979999853889---99999-9-------75-------3768980899
Q gi|254780414|r 21 QLIARRVRESKVYCEVIAFKNALDYFK--EQNPQAIILSGSPAS---SLDID-S-------PQ-------IPKEILESNI 80 (520)
Q Consensus 21 qLIaRriRelgVyseI~P~~~~~e~i~--~~~p~GIILSGGP~S---V~d~~-a-------p~-------~~~~I~~~~i 80 (520)
+...+.+...|.-..++|+..+...+. ....+|+|||||+.- .|.++ . |. +-+..++.++
T Consensus 22 ~~y~~~i~~~G~~Pi~iP~~~~~~~~~~~l~~lDGliLtGG~Di~p~~yg~~~~~~~~~~~~~RD~~E~~l~~~a~~~~~ 101 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGK 101 (189)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999879999996899987999999987799997288778810038877765678886689999999999998098
Q ss_pred CEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCE
Q ss_conf 88997789999899709699986986610366752388622278726655336860022011012444211232398317
Q gi|254780414|r 81 PLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPF 160 (520)
Q Consensus 81 PILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~i 160 (520)
||||||+|||+|+.++||+...- + .|...|++.|.++|+++.++|+++++.|
T Consensus 102 PilGICRG~Q~inv~~GGtL~q~---------------------i-------~VNS~H~~~i~~l~~~l~~~a~~~dg~i 153 (189)
T cd01745 102 PILGICRGMQLLNVALGGTLYQD---------------------I-------RVNSLHHQAIKRLADGLRVEARAPDGVI 153 (189)
T ss_pred CCEEEHHHHHHHHHHHCCEEEEC---------------------C-------CCCCCCHHHHHCCCCCCEEEEECCCCCE
T ss_conf 76035054999999959857503---------------------4-------0576410067607888689999699987
Q ss_pred EEEEECCCC-EEEEEEEEHHHCC--CHHHHHHHHHH
Q ss_conf 889863500-1124652122215--20257799875
Q gi|254780414|r 161 AFIADEKRK-YYAVQFHPEVVHT--VGGSQLIDNFV 193 (520)
Q Consensus 161 aai~~~~~~-iyGVQFHPEV~hT--~~G~~iL~NFl 193 (520)
+|+++++++ ++|||||||-.-. +...+|++.|+
T Consensus 154 Ea~~~~~~~~~~gvqwHPE~~~~~~~~~~~lF~~fv 189 (189)
T cd01745 154 EAIESPDRPFVLGVQWHPEWLADTDPDSLKLFEAFV 189 (189)
T ss_pred EEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 999968999089997488678989857889999869
No 65
>PRK13179 consensus
Probab=99.87 E-value=7.7e-21 Score=169.17 Aligned_cols=174 Identities=19% Similarity=0.302 Sum_probs=121.6
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCCC-CCCCCCH---HHHHCCCCEE
Q ss_conf 9999889705788998888659406985289898899723997999985-388-99999-9975376---8980899889
Q gi|254780414|r 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLDI-DSPQIPK---EILESNIPLL 83 (520)
Q Consensus 10 IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d~-~ap~~~~---~I~~~~iPIL 83 (520)
|.|+|+|+---+.+.+.++.+|+.+.+. .+.+++. +.+.|||.| |.. ++.+. ..-.++. +..+.+.|+|
T Consensus 2 I~IiDyg~gNi~Sv~~al~~~g~~~~i~---~~~~~i~--~~d~lILPGVGsF~~~m~~L~~~~l~~~i~~~~~~~kpiL 76 (207)
T PRK13179 2 IAIIDYGMGNLRSVQKGFEKVGFEAVVT---ADPKVVL--EAEKVVLPGVGAFRDCMRNLEQGGFVEPILRVIRDGRPFL 76 (207)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEE
T ss_conf 9999569358999999999859987996---8999994--3998998997867999999885376168999986599689
Q ss_pred EECHHHHHHHHH------------CCCEEEEC-----------CCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 977899998997------------09699986-----------9866103667523886222787266553368600220
Q gi|254780414|r 84 GICYGQQIMCQS------------LGGKTKNS-----------QSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGD 140 (520)
Q Consensus 84 GICyG~QlLa~~------------~GG~V~~~-----------~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D 140 (520)
|||+|||+|... +-|+|.+- +.+.-||..+...+++++|.++.+....+ ..|++
T Consensus 77 GICLGmQlLf~~S~E~g~~~GLgli~G~V~kl~~~~~~~~~~~kiPhiGWn~i~~~~~~~~~~~~~~~~~fY---FvHSY 153 (207)
T PRK13179 77 GICVGMQLLFTDSEEFGLYQGLNVIPGHVLRFPEGMREGGEELKVPHMGWNQLSIRRRPPAFQGIEDGTNVY---FVHSY 153 (207)
T ss_pred EEEHHHHHCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHCCCCCCCEEE---EEECC
T ss_conf 980779963798806995577878340799876443444654668751125664367883101445677079---98431
Q ss_pred HHHCCCCCCCEEECCCCC--CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 110124442112323983--17889863500112465212221520257799875501
Q gi|254780414|r 141 QVEHIPEGFEVIASSDST--PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 141 ~V~~lP~gf~viA~S~~~--~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
++.-. +...+.|++..+ .+|+++ ..++||+|||||-+ ...|.++|+||+ ++
T Consensus 154 ~~~~~-~~~~i~~~~~yg~~~~a~v~--k~Ni~G~QFHPEKS-~~~Gl~lLknF~-el 206 (207)
T PRK13179 154 YVKPD-DESVVAATTGYGIEFCAAVW--KDNIVATQFHPEKS-QAVGLSILKNFG-EM 206 (207)
T ss_pred EECCC-CCCCEEEEEECCCEEEEEEE--ECCEEEEECCHHHC-CHHHHHHHHHHH-HC
T ss_conf 64157-84518999848997999999--69999995880125-586899999997-13
No 66
>PRK13173 consensus
Probab=99.87 E-value=1.1e-20 Score=168.01 Aligned_cols=173 Identities=25% Similarity=0.386 Sum_probs=117.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCC-CCCCCCCHHHH--HCCCCE
Q ss_conf 869999889705788998888659406985289898899723997999985-388-9999-99975376898--089988
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLD-IDSPQIPKEIL--ESNIPL 82 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d-~~ap~~~~~I~--~~~iPI 82 (520)
.+|.|||+|+---..+.|.++.+|+.++|. .+.+++. +.+.+||.| |.. ++.. -..-.++..+. ..+.|+
T Consensus 2 ~kI~IiDyg~gNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lILPGVGsF~~~m~~L~~~~l~~~i~~~~~~kpi 76 (211)
T PRK13173 2 TKIALLDYGMGNLHSASKALSAVGAEVSIT---NDPKVIA--AADKIVFPGVGAMRDCMAGMHEAGIDEVVRQAIFNKPV 76 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCE
T ss_conf 879999689449999999999869988996---7999984--38968975778689999998862979999988629998
Q ss_pred EEECHHHHHHHHH---------CC---CEEEECC------------CCCCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEE
Q ss_conf 9977899998997---------09---6999869------------866103667523-886222787266553368600
Q gi|254780414|r 83 LGICYGQQIMCQS---------LG---GKTKNSQ------------SREFGRAFIEIK-KNCSLLKGMWEKGSKQQVWMS 137 (520)
Q Consensus 83 LGICyG~QlLa~~---------~G---G~V~~~~------------~~EyG~~~I~i~-~~~~lf~gl~~~~~~~~VwmS 137 (520)
||||+|||+|+.. +| |+|++-. .+.-||..+... ..+++++++.+... ++..
T Consensus 77 LGICLGMQlLf~~s~E~g~~~GLgli~G~V~~l~~~~~~~~~~~~kvPhiGWn~v~~~~~~~~l~~~i~~~~~---fYFv 153 (211)
T PRK13173 77 MAICVGMQALFEQSAENGGTPCLSILDGTVKAFDPSWKDPKGVQIKVPHMGWNTISGMDFEHPLWNGIDDKAH---FYFV 153 (211)
T ss_pred EEEEHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCE---EEEE
T ss_conf 9981888985068988999671306600698767444675555434660003454335765364449987860---7998
Q ss_pred CCCHHHCCCCC-CCEEECCCC--CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 22011012444-211232398--317889863500112465212221520257799875
Q gi|254780414|r 138 HGDQVEHIPEG-FEVIASSDS--TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 138 H~D~V~~lP~g-f~viA~S~~--~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|++.+. |.+ ..+.|.+.. ..+++++ ..++||+|||||-++ +.|.++|+||+
T Consensus 154 HSY~~~--~~~~~~~~~~~~yg~~f~a~v~--k~Ni~G~QFHPEKS~-~~Gl~lLknFl 207 (211)
T PRK13173 154 HSYYCE--PADSSQVAAICDYGQPFCASIL--KDNLFATQFHPEKSH-TAGLQLLKNFV 207 (211)
T ss_pred EEEEEE--CCCCCEEEEEEECCCEEEEEEE--ECCEEEEECCHHHCC-HHHHHHHHHHH
T ss_conf 667870--3782507899838988999999--699999908801245-86899999997
No 67
>KOG1224 consensus
Probab=99.87 E-value=3.6e-21 Score=171.50 Aligned_cols=195 Identities=23% Similarity=0.275 Sum_probs=141.6
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHH-CCCEEEEECCC-CCHH----HHHH-CCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 8634488699998897057889988886-59406985289-8988----9972-39979999853889999999753768
Q gi|254780414|r 2 HKRERSSKVLIIDFGSQFTQLIARRVRE-SKVYCEVIAFK-NALD----YFKE-QNPQAIILSGSPASSLDIDSPQIPKE 74 (520)
Q Consensus 2 ~~~~~~~~IlIlDfGSQytqLIaRriRe-lgVyseI~P~~-~~~e----~i~~-~~p~GIILSGGP~SV~d~~ap~~~~~ 74 (520)
.++...-++|.+|.=..||-.|.|-+.. -++-|.++-++ ..-+ .+.. -..++|+.+.||.|..-+....+-.+
T Consensus 9 k~~~~rl~~LlID~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~a~d~gI~~r 88 (767)
T KOG1224 9 KKSLPRLRTLLIDNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMCAADIGICLR 88 (767)
T ss_pred HHHHHHEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 86631202888712454121399999874179967998343237789998864002244896689979874788789999
Q ss_pred HHHC--CCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCC-CCCEEEEEECCCHHHCCCCCCCE
Q ss_conf 9808--99889977899998997096999869866103667523886222787266-55336860022011012444211
Q gi|254780414|r 75 ILES--NIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEK-GSKQQVWMSHGDQVEHIPEGFEV 151 (520)
Q Consensus 75 I~~~--~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~-~~~~~VwmSH~D~V~~lP~gf~v 151 (520)
++.. .|||||||+|+|.|+.+.|+.|...+..-+|+..-.-.+...+|.|++.. ++.+.+-..|+..+..+|-+...
T Consensus 89 l~~~~~~iPilGICLGfQal~l~hGA~v~~~n~p~HGrvs~i~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~~pid~l~ 168 (767)
T KOG1224 89 LLLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGRVSGIEHDGNILFSGIPSGRNSDFKVVRYHSLIINSLPIDLLP 168 (767)
T ss_pred HHHHCCCCCEEEEEHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCEEECCCCCCCCCCCEEEEEEEEEECCCCHHHHC
T ss_conf 99865788646543214767653166110378764324666772684787157778866440477677872577611212
Q ss_pred -EECCC--CC-CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf -23239--83-178898635001124652122215202577998755010
Q gi|254780414|r 152 -IASSD--ST-PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 152 -iA~S~--~~-~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
++.++ |+ ..+++.+.+.|.||+|||||+..|+.|.++++||+ ++.
T Consensus 169 il~t~~ddng~ilMsi~~~~fPhfG~qyHPES~~s~~g~~lfkNFl-~lt 217 (767)
T KOG1224 169 ILWTIYDDNGHILMSIMHSSFPHFGLQYHPESIASTYGSQLFKNFL-DLT 217 (767)
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHH-HHH
T ss_conf 0137606886289875315788534233707753134579998777-763
No 68
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.87 E-value=3.8e-21 Score=171.35 Aligned_cols=175 Identities=19% Similarity=0.285 Sum_probs=116.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCC-CCCCCCCH---HHHHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985-388-9999-99975376---89808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLD-IDSPQIPK---EILESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d-~~ap~~~~---~I~~~~iP 81 (520)
-+|.|+|+|+---..+.|.++.+|+.+.+.. ..+++. +.++|||.| |.. ++.+ -..-.+.. +..+.+.|
T Consensus 2 ~~I~Iid~g~GNi~Sv~~al~~~g~~~~ii~---~~~~i~--~~d~lILPGVGsf~~~m~~L~~~~l~~~i~~~~~~g~p 76 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIIN---SESELA--QVHALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNP 76 (210)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEC---CHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 7799995884789999999998699879979---999996--48968988867389999988630516999999976998
Q ss_pred EEEECHHHHHHHHH-----------CCCEEEECC------CCCCCEEEEEECCCC------CCCCCCCCCCCCEEEEEEC
Q ss_conf 89977899998997-----------096999869------866103667523886------2227872665533686002
Q gi|254780414|r 82 LLGICYGQQIMCQS-----------LGGKTKNSQ------SREFGRAFIEIKKNC------SLLKGMWEKGSKQQVWMSH 138 (520)
Q Consensus 82 ILGICyG~QlLa~~-----------~GG~V~~~~------~~EyG~~~I~i~~~~------~lf~gl~~~~~~~~VwmSH 138 (520)
+||||+|||+|+.. +.|+|.+-+ .+..||..+...+.. +.++++.... .++-.|
T Consensus 77 iLGICLGmQlLf~~seEg~~~GLgli~G~v~k~~~~~~~kvPh~GWn~i~~~~~~~~~~~~~~~~~~~~~~---~~YFvH 153 (210)
T CHL00188 77 FIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNP---WAYFVH 153 (210)
T ss_pred EEEEEHHEEEEEHHCCCCCCCCCCEECCEEEECCCCCCCCCCCCCHHHEECCCCCCCCCCCCHHHCCCCCC---CEEEEE
T ss_conf 69984210221022115676773456668999378866467320542324457643344451121577677---079974
Q ss_pred CCHHHCCCCC-CCEEECCCCC---CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHH
Q ss_conf 2011012444-2112323983---1788986350011246521222152025779987550
Q gi|254780414|r 139 GDQVEHIPEG-FEVIASSDST---PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHH 195 (520)
Q Consensus 139 ~D~V~~lP~g-f~viA~S~~~---~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~ 195 (520)
++.+. |.+ -.+.+.+..+ .+++++ ..++||+|||||-+ ...|.++|+||+.+
T Consensus 154 SY~~~--~~~~~~~~~~~~yg~~~~~a~v~--k~Ni~G~QFHPEKS-~~~Gl~lL~nFl~~ 209 (210)
T CHL00188 154 SYGVM--PKSQACATTTTFYGKQQMVAAIE--YDNIFAMQFHPEKS-GEFGLWLLREFMKK 209 (210)
T ss_pred EEEEC--CCCCCEEEEEEEECCEEEEEEEE--ECCEEEEECCCCCC-CHHHHHHHHHHHHC
T ss_conf 13552--79843799999639989999997--19999994880007-68799999999755
No 69
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; InterPro: IPR010139 Imidazole glycerol phosphate synthetase (IGPS) is a key metabolic enzyme, which links amino acid and nucleotide biosynthesis: it catalyses the closure of the imidazole ring within histidine biosynthesis (fifth step), and provides the substrate for de novo purine biosynthesis. IGPS consists of two different subunits: HisH, a glutamine amidotransferase (glutaminase), and HisF, a synthase (cyclase). HisH functions to provide a source of nitrogen, which is required for the synthesis of histidine and purines. In the HisH glutaminase reaction, the hydrolysis of glutamine yields ammonia, which is then used by HisF in the subsequent synthase reaction. The X-ray structure of the HisH/HisF heterodimer of IGPS reveals a putative tunnel for the transfer of ammonia from HisH to HisF via a (beta-alpha)8 barrel fold within HisF that abuts HisH . Ammonia tunnels connect the glutaminase and synthase active sites. HisH belongs to a large group of enzymes found in diverse and fundamental anabolic pathways. These enzymes share a common domain, referred to as the type-I glutamine amidotransferase (GATase) domain, which can occur either as single polypeptides (as with HisH) or as domains of large multifunctional proteins.; GO: 0016763 transferase activity transferring pentosyl groups, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=99.87 E-value=2.1e-21 Score=173.23 Aligned_cols=173 Identities=24% Similarity=0.367 Sum_probs=126.9
Q ss_pred EEEEECCCCHHHH----HHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCCC-C----CCCCCCCCCHHHHHCC
Q ss_conf 9999889705788----998888659406985289898899723997999985-3889-9----9999975376898089
Q gi|254780414|r 10 VLIIDFGSQFTQL----IARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPAS-S----LDIDSPQIPKEILESN 79 (520)
Q Consensus 10 IlIlDfGSQytqL----IaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~S-V----~d~~ap~~~~~I~~~~ 79 (520)
|+|||||.--=.. +.|.+..+|+-.+|..-+ .+.+. ..+.|||-| |... + .+-+-..+-..+...+
T Consensus 1 i~viDYG~GNL~SlyrGV~~Al~~~G~~~~v~~~~--y~~~~--~aD~l~LPGVG~F~~aM~~l~~~~~~~~~~~~~~~~ 76 (211)
T TIGR01855 1 IVVIDYGVGNLRSLYRGVKRALKRVGAEPVVVKDS--YKELE--KADKLILPGVGAFKAAMARLRELGLLDLLELVVKKK 76 (211)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHH--CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97874371656889999999998449817996286--03431--068678578588899999988500587889999618
Q ss_pred CCEEEECHHHHHHHHH-------------CCCEEEEC---------CCCCCCEEEEEECCCC-CCCCCCCCCCCCEEEEE
Q ss_conf 9889977899998997-------------09699986---------9866103667523886-22278726655336860
Q gi|254780414|r 80 IPLLGICYGQQIMCQS-------------LGGKTKNS---------QSREFGRAFIEIKKNC-SLLKGMWEKGSKQQVWM 136 (520)
Q Consensus 80 iPILGICyG~QlLa~~-------------~GG~V~~~---------~~~EyG~~~I~i~~~~-~lf~gl~~~~~~~~Vwm 136 (520)
.|+||||+|||||... +.|+|.|. +.+.-||..+...+++ +|++|+.+....+.|
T Consensus 77 ~P~lGiCLGMQLLfe~SeE~g~~~~GLG~i~G~V~k~~~~~~~~~lk~PHmGWN~v~~~~~~C~ll~g~~~~~~~YFV-- 154 (211)
T TIGR01855 77 KPVLGICLGMQLLFERSEEGGGEVPGLGLIKGKVVKLEARVSLSKLKVPHMGWNEVEPVKESCPLLKGIDKGAYFYFV-- 154 (211)
T ss_pred CCEEEEEHHHHHHHCCCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCCCEEEEHHHCCCHHCCCCCCCCEEEE--
T ss_conf 968999802343001562437886653112761342056778872545756564231231155113077667815568--
Q ss_pred ECCCHHHCCCCC-CCEEECCCCC-C-EEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 022011012444-2112323983-1-7889863500112465212221520257799875
Q gi|254780414|r 137 SHGDQVEHIPEG-FEVIASSDST-P-FAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 137 SH~D~V~~lP~g-f~viA~S~~~-~-iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
|++++. +-++ =.++|+++.+ + .|+++ ..+++|+|||||-+| ..|.+||+||+
T Consensus 155 -HSY~~~-~~~~S~~v~a~~~YG~~F~AaV~--~~n~~G~QFHPEKS~-~~G~~lL~nf~ 209 (211)
T TIGR01855 155 -HSYYAV-CEEESEAVLAKADYGEKFTAAVQ--KDNIFGTQFHPEKSG-KTGLKLLKNFL 209 (211)
T ss_pred -EEEEEE-CCCCHHHEEEEHHCCCCEEEEEE--CCCEEEEEECCHHHH-HHHHHHHHHHH
T ss_conf -866776-16881150112001863044665--487899972856888-89999999985
No 70
>PRK13147 consensus
Probab=99.87 E-value=1.1e-20 Score=168.09 Aligned_cols=175 Identities=19% Similarity=0.356 Sum_probs=116.4
Q ss_pred EEEEEECCCCHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCC--CCCCCCC---HHHHH
Q ss_conf 699998897057889988886----59406985289898899723997999985-388-9999--9997537---68980
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRE----SKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLD--IDSPQIP---KEILE 77 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRe----lgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d--~~ap~~~---~~I~~ 77 (520)
||.|+|+|+---+.+.|.++. +|+.+++.- ....+++. +.+.+||.| |.. ++.. .....++ ....+
T Consensus 2 kI~IIDyg~GNi~Sv~~al~~~~~~~gl~~~~~i-~~~~~~i~--~~d~lILPGVGsF~~~m~~L~~~~~l~~~i~~~~~ 78 (211)
T PRK13147 2 RVVVIDYNGGNLASAARALEKAATRKGIDATVVI-SADPTDVR--NADRIVLPGQGAFADCAQGLAAIPGLRNAIETATA 78 (211)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEE-ECCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8999937943699999999988753588843999-69999996--49978989866489999998863585999999997
Q ss_pred CCCCEEEECHHHHHHHHH------------CCCEEEECCC-----CCCCEEEEEECCC-CCCCCCCCCCCCCEEEEEECC
Q ss_conf 899889977899998997------------0969998698-----6610366752388-622278726655336860022
Q gi|254780414|r 78 SNIPLLGICYGQQIMCQS------------LGGKTKNSQS-----REFGRAFIEIKKN-CSLLKGMWEKGSKQQVWMSHG 139 (520)
Q Consensus 78 ~~iPILGICyG~QlLa~~------------~GG~V~~~~~-----~EyG~~~I~i~~~-~~lf~gl~~~~~~~~VwmSH~ 139 (520)
.+.|+||||+|||+|+.. +-|+|++.+. +..||..+.+.++ .++++++.+... ++..|+
T Consensus 79 ~~~piLGICLGMQlL~~~s~E~g~~~GLgli~G~v~kl~~~~~kvPhiGWn~i~~~~~~~~~~~~~~~~~~---fYFvHS 155 (211)
T PRK13147 79 AGTPFLGICVGMQLMAERGLEHERTPGFGWISGEIARMDAPGLRLPHMGWNTLDFTPGAHPLTDGLIPGDH---GYFVHS 155 (211)
T ss_pred CCCCEEEECHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECEEEEECCCCCCHHHCCCCCCCE---EEEECC
T ss_conf 69987998367575216465379877400770289989876788876252688705786643247676886---999612
Q ss_pred CHHHCCCCCCCEEECCCCC--CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 0110124442112323983--17889863500112465212221520257799875
Q gi|254780414|r 140 DQVEHIPEGFEVIASSDST--PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 140 D~V~~lP~gf~viA~S~~~--~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
+++.. .+.-.++|.+..+ .+|+++ ..++||+|||||-+ ...|.++|+||+
T Consensus 156 Y~~~~-~~~~~~~~~~~yg~~~~s~v~--k~Ni~G~QFHPEKS-~~~Gl~ll~nFl 207 (211)
T PRK13147 156 YALRD-GADSDLVATTQYGGQVPAIVA--RGNRAGTQFHVEKS-QEVGLTILGNFL 207 (211)
T ss_pred CCCCC-CCCCCEEEEEECCCEEEEEEE--ECCEEEEECCCHHC-CHHHHHHHHHHH
T ss_conf 34068-888768999989998999999--89999996880014-686899999986
No 71
>TIGR01823 PabB-fungal para-aminobenzoate synthase; InterPro: IPR010117 This entry represents the fungal clade of para-aminobenzoate synthase, which acts on chorismate to form para-aminobenzoic acid (PABA), a precursor of folate..
Probab=99.86 E-value=8.1e-21 Score=168.99 Aligned_cols=193 Identities=20% Similarity=0.277 Sum_probs=142.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH---HCC-----CEEEEECCCCCH--HHHHHC--CCCEEEECCCCCCCCC-CCCCCCC
Q ss_conf 48869999889705788998888---659-----406985289898--899723--9979999853889999-9997537
Q gi|254780414|r 6 RSSKVLIIDFGSQFTQLIARRVR---ESK-----VYCEVIAFKNAL--DYFKEQ--NPQAIILSGSPASSLD-IDSPQIP 72 (520)
Q Consensus 6 ~~~~IlIlDfGSQytqLIaRriR---elg-----VyseI~P~~~~~--e~i~~~--~p~GIILSGGP~SV~d-~~ap~~~ 72 (520)
..-.||-||.=-.||-.+.|-|. |.. |...++.+|..- +.+.+. ..++|++..||+..+. ...-.+.
T Consensus 4 ~rl~vL~ID~YDSftyNvv~lle~~~d~~PGvnav~V~tvhsD~~~sm~~l~e~l~~FdAiVvGPGPG~PN~GA~d~gI~ 83 (851)
T TIGR01823 4 ARLQVLFIDAYDSFTYNVVALLEKALDVRPGVNAVSVITVHSDKFDSMDDLLELLLLFDAIVVGPGPGDPNVGAKDVGIL 83 (851)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 31441578701101689999999874158774468999970687235346888874178589888776776511444688
Q ss_pred HHHHHCC------CCEEEECHHHHHHHHHCCCEEEECC-CCCCCEEEEEECCCCCCCCCCCC-CCCCEEEEEECCCHHHC
Q ss_conf 6898089------9889977899998997096999869-86610366752388622278726-65533686002201101
Q gi|254780414|r 73 KEILESN------IPLLGICYGQQIMCQSLGGKTKNSQ-SREFGRAFIEIKKNCSLLKGMWE-KGSKQQVWMSHGDQVEH 144 (520)
Q Consensus 73 ~~I~~~~------iPILGICyG~QlLa~~~GG~V~~~~-~~EyG~~~I~i~~~~~lf~gl~~-~~~~~~VwmSH~D~V~~ 144 (520)
.++|+++ +||||||+|+|.||.+.|..|++.+ ...||+..--.+.+..+|+|+.+ .+.+..+-..|+.++..
T Consensus 84 ~~~w~l~~Gk~D~~Pv~GICLGFQslcL~qGa~i~rlpn~p~HGqV~~~~t~~~~if~g~~~GyPdtvk~trYHSLyan~ 163 (851)
T TIGR01823 84 REVWELANGKLDEVPVLGICLGFQSLCLYQGADIERLPNLPLHGQVYEVKTSDAAIFEGVSSGYPDTVKSTRYHSLYANK 163 (851)
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCEEEEEEEEEEECC
T ss_conf 99997328953135511001568999985588235617886574378887401155524114788632244557887317
Q ss_pred CCCCC------------------------CEEECCCC-CCEEEEEECCCCEEEEEEEEHHHCCCHH--HHHHHHHHHHHC
Q ss_conf 24442------------------------11232398-3178898635001124652122215202--577998755010
Q gi|254780414|r 145 IPEGF------------------------EVIASSDS-TPFAFIADEKRKYYAVQFHPEVVHTVGG--SQLIDNFVHHVA 197 (520)
Q Consensus 145 lP~gf------------------------~viA~S~~-~~iaai~~~~~~iyGVQFHPEV~hT~~G--~~iL~NFl~~Ic 197 (520)
.|.+- .+++.+++ ..+++++++++|+||||||||+..|+.| .+|++||+ +++
T Consensus 164 ~~id~strGvdsGnPqadrfaskdldLL~~~l~ed~e~~i~Ms~~~~k~P~fGv~yHPESc~S~~~a~~kl~~nfl-~la 242 (851)
T TIGR01823 164 ESIDSSTRGVDSGNPQADRFASKDLDLLALILLEDEEDQILMSVKAKKKPIFGVQYHPESCKSEKEASVKLLKNFL-KLA 242 (851)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HHH
T ss_conf 8865332555678850123343236789988622688812200310588774565056433455457899999999-874
Q ss_pred CC
Q ss_conf 64
Q gi|254780414|r 198 GI 199 (520)
Q Consensus 198 ~~ 199 (520)
-.
T Consensus 243 ~~ 244 (851)
T TIGR01823 243 LI 244 (851)
T ss_pred HC
T ss_conf 01
No 72
>PRK13172 consensus
Probab=99.86 E-value=2e-20 Score=166.13 Aligned_cols=175 Identities=21% Similarity=0.341 Sum_probs=118.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCC-CCCCCCCH---HHHHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985-388-9999-99975376---89808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLD-IDSPQIPK---EILESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d-~~ap~~~~---~I~~~~iP 81 (520)
.+|.|+|+|+---+.+.|.++.+|+.+.+. .+.+++. +.+.|||.| |.. ++.+ -..-.++. +..+.+.|
T Consensus 2 ~~I~IIDyG~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIlPGVGsF~~~m~~L~~~~l~~~i~~~~~~~kp 76 (213)
T PRK13172 2 SSVSIVDYGVGNLLSVARAFQYFDASVNLV---STPEEIM--SADRLVLPGVGAFEDGMKGLTTLNFIEPIKQFARSGKP 76 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 879999789429999999999869988997---7999983--38978976878469999988723863789998765995
Q ss_pred EEEECHHHHHHHHH------------CCCEEEECCC----------CCCCEEEEEECCCC-----CCCCCCCCCCCCEEE
Q ss_conf 89977899998997------------0969998698----------66103667523886-----222787266553368
Q gi|254780414|r 82 LLGICYGQQIMCQS------------LGGKTKNSQS----------REFGRAFIEIKKNC-----SLLKGMWEKGSKQQV 134 (520)
Q Consensus 82 ILGICyG~QlLa~~------------~GG~V~~~~~----------~EyG~~~I~i~~~~-----~lf~gl~~~~~~~~V 134 (520)
+||||+|||+|... +.|+|.+.+. +.-||..+...+.+ ++|+++..... +
T Consensus 77 iLGICLGmQlLf~~s~E~g~~~GLgli~G~v~kl~~~~~~~~~~kvPh~GWn~i~~~~~~~~~~~~l~~~~~~~~~---f 153 (213)
T PRK13172 77 FLGICLGMQMMLSKSTEFGQHEGLGLIAGEVVSVPSHGVDGQLHKIPHIGWNELVSTSEGEDWCHTILKNIPLNSS---V 153 (213)
T ss_pred EEEEEHHHHHHHHCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCCCEECHHHEECCCCCCCCCCHHHCCCCCCCE---E
T ss_conf 7998576662653864687647665755259877755666645627620144533245543334366618977861---7
Q ss_pred EEECCCHHHCCCCCCCEEECCCC--CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 60022011012444211232398--317889863500112465212221520257799875
Q gi|254780414|r 135 WMSHGDQVEHIPEGFEVIASSDS--TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 135 wmSH~D~V~~lP~gf~viA~S~~--~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
+..|++.+.. .+.-.++|.+.. -.+.|+- ...++||+|||||-+ ...|.++|+||+
T Consensus 154 YFvHSY~~~~-~~~~~~~a~~~y~g~~~~a~i-~~~Ni~G~QFHPEKS-~~~Gl~lL~nFl 211 (213)
T PRK13172 154 YFVHSFMAMP-SNPKKRLADTLYDGQAISAVI-KDENMYGCQFHPEKS-GEVGLSIIQQFL 211 (213)
T ss_pred EEEEEEEEEC-CCCCCEEEEEEECCEEEEEEE-ECCCEEEEECCHHHC-CHHHHHHHHHHH
T ss_conf 9998778853-888738999998999999999-889999980880223-686999999997
No 73
>pfam02540 NAD_synthase NAD synthase. NAD synthase (EC:6.3.5.1) is involved in the de novo synthesis of NAD and is induced by stress factors such as heat shock and glucose limitation.
Probab=99.85 E-value=4.2e-20 Score=163.88 Aligned_cols=173 Identities=21% Similarity=0.298 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999997650---4440366405640477999999862236-569999738955156278999988623698579975
Q gi|254780414|r 209 HKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVD 284 (520)
Q Consensus 209 ~~~~i~~Ir~~v---g~~kVi~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vd 284 (520)
++..++-||+.+ |-++|++||||||||+|+|+|+++|+|. |+++++ ........++.+--+.+.+.+|++...+|
T Consensus 2 i~~i~~~l~dyv~k~g~~gvViGlSGGIDSav~a~La~~AlG~~~v~~v~-mP~~~ss~~s~~~A~~la~~lgi~~~~i~ 80 (243)
T pfam02540 2 IERLVDFLRDYVQKSGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALI-MPSINSSEEDVQDALALAENLGINYKTID 80 (243)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 67999999999998199919997888799999999999955974289996-47778988899999999999689269998
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 88999999668988899998875658999999997439-97099864622024542024677763034430232011320
Q gi|254780414|r 285 ASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG-GAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHM 363 (520)
Q Consensus 285 a~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~-~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~ 363 (520)
-++.| +++....+|+..+...||..-++..-..-.+- ...+|..||-. ||...+|-..+.=
T Consensus 81 I~~~~-~~~~~~~~~~~~~~a~~Ni~aR~Rm~~ly~~A~~~~~lVlgT~N-----------------ksE~~~Gy~TkyG 142 (243)
T pfam02540 81 IKPIV-RAFSQLFQPAKDDLAKGNLKARIRMIILYAHANKFNRLVLGTGN-----------------KSELALGYFTKYG 142 (243)
T ss_pred CHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-----------------CCCEEEEEEEECC
T ss_conf 88999-99998853201377874557888899999862337918981687-----------------0420054323127
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
Q ss_conf 3-202237898738999999998199988942688898
Q gi|254780414|r 364 D-MKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 364 ~-~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPG 400 (520)
. .-=+.||.+|||.|||+|++.||+|++++.|.|=||
T Consensus 143 D~~~di~Pi~dL~KteV~~la~~l~vP~~ii~k~Psa~ 180 (243)
T pfam02540 143 DGACDIAPIGDLYKTQVYELAKRLNVPERIIKKPPSAD 180 (243)
T ss_pred CCCCCHHHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 77655154168818999999999498888983799988
No 74
>PRK13151 consensus
Probab=99.85 E-value=2e-20 Score=166.13 Aligned_cols=172 Identities=24% Similarity=0.400 Sum_probs=117.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCC-CCCCCCCHHHHHCCCCEEEE
Q ss_conf 69999889705788998888659406985289898899723997999985-388-9999-99975376898089988997
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLD-IDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d-~~ap~~~~~I~~~~iPILGI 85 (520)
||.|+|+|+---..+.|.++.+|+.++|. .+.+++. +.++|||.| |.. ++.. -..-.+...+.+.+.|+|||
T Consensus 2 kI~IiDyg~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lIlPGVGsf~~~m~~L~~~~l~~~i~~~~kpiLGI 76 (195)
T PRK13151 2 KIIIIDTACANLASLKFCLDRLGFNATIS---RDLKELE--SADKLFLPGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGI 76 (195)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEE
T ss_conf 89999479609999999999859987996---7999994--489699888899999999998747788898639966887
Q ss_pred CHHHHHHHHH-----------CCCEEEECCC------CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCC
Q ss_conf 7899998997-----------0969998698------6610366752388622278726655336860022011012444
Q gi|254780414|r 86 CYGQQIMCQS-----------LGGKTKNSQS------REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEG 148 (520)
Q Consensus 86 CyG~QlLa~~-----------~GG~V~~~~~------~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~g 148 (520)
|+|||+|... +.|.|++.+. +.-||.++. .++.+|+++. .. .++.-|++++. +++
T Consensus 77 CLGMQlL~~~seE~~~~gLgli~g~v~k~~~~~~~~vPhiGWn~v~--~~~~l~~~i~-~~---~fYFvHSY~~~--~~~ 148 (195)
T PRK13151 77 CLGMQILGNFSEELNQETLKLIDFTTQKFKAKEGFTFPHMGWNQVH--SSHALFKGLE-GA---YFYFVHSYCVG--LGE 148 (195)
T ss_pred EEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEHHHCC--CCCHHHCCCC-CC---EEEEEEEEECC--CCC
T ss_conf 7647876514757675762642026888646557888674112256--6770121666-76---27887304526--765
Q ss_pred CCEEECCCC-CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 211232398-317889863500112465212221520257799875501
Q gi|254780414|r 149 FEVIASSDS-TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 149 f~viA~S~~-~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~I 196 (520)
+ .+|.++. ..+.|+-. ..++||+|||||-+ .+.|.++|+||+.+|
T Consensus 149 ~-~ia~~~y~~~f~a~v~-k~Ni~G~QFHPEKS-~~~Gl~lL~nFlk~i 194 (195)
T PRK13151 149 Y-TIADCEYSQKFSASVM-KDNFYGVQFHPERS-SEAGEILISNFIKDI 194 (195)
T ss_pred C-EEEEEECCCEEEEEEE-ECCEEEEECCCHHC-CHHHHHHHHHHHHHC
T ss_conf 6-3789737988999999-19999992880030-587999999998752
No 75
>PRK13144 consensus
Probab=99.85 E-value=1.5e-20 Score=167.19 Aligned_cols=166 Identities=20% Similarity=0.315 Sum_probs=113.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCC---CCCCHHHHHCCCCEEEE
Q ss_conf 699998897057889988886594069852898988997239979999853889999999---75376898089988997
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS---PQIPKEILESNIPLLGI 85 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~a---p~~~~~I~~~~iPILGI 85 (520)
||.|||||.---+.+.+.++.+|..+.|. .+.+++.. .+++||.| ..|- +... -.+...+ .+.|+|||
T Consensus 2 kI~IiDyg~GNi~Sv~~al~~~g~~~~i~---~~~~~i~~--~d~lIlPG-VGsf-~~a~~~~~~~~~~i--~~kpiLGI 72 (190)
T PRK13144 2 RVGVVDYTVGNIGSVLAALKRAGAEPVVV---KEPEEANR--VDALVLPG-VGTY-EAAYALARSFKEVI--LEKPTLAI 72 (190)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEE---CCHHHHHH--CCEEEECC-CCCH-HHHHHHHHHHHHHH--HCCCEEEE
T ss_conf 89999279368999999999849986997---89999954--89789748-8859-99999999999997--47984898
Q ss_pred CHHHHHHHHHC-----------CCEEEECCC---CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCE
Q ss_conf 78999989970-----------969998698---6610366752388622278726655336860022011012444211
Q gi|254780414|r 86 CYGQQIMCQSL-----------GGKTKNSQS---REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEV 151 (520)
Q Consensus 86 CyG~QlLa~~~-----------GG~V~~~~~---~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~v 151 (520)
|+|||+|.... -|+|++-+. +.-||..+...+.+++++. . ..+.-|++.+. ..+...+
T Consensus 73 ClGmQlL~~~seE~~~~GLgli~G~v~kl~~~kvPh~GWn~v~~~~~~~~~~~----~---~fYFvHSY~~~-~~~~~~~ 144 (190)
T PRK13144 73 CLGMQLLFESSEEGGGRGLGIFRGRVERIKARKVPHIGWSYTRVVKPLPFVEE----G---YYYYLHSYGVR-WDEDEAH 144 (190)
T ss_pred EHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCEEECCCCCCCCCC----C---EEEEEEEEEEC-CCCCCCE
T ss_conf 76588664456334787630797699987888887636600034678876445----5---59999988722-6887648
Q ss_pred EECCCC--CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf 232398--3178898635001124652122215202577998755
Q gi|254780414|r 152 IASSDS--TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 152 iA~S~~--~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
+|.++. ..+++++ ..++||+|||||-+ .+.|.++|+||+-
T Consensus 145 ~~~~~~g~~~~s~v~--~~Ni~G~QFHPEKS-~~~Gl~lLknFl~ 186 (190)
T PRK13144 145 VAYVELGRRYVAAVE--KGHILGVQFHPERS-GRAGLELIRRFLA 186 (190)
T ss_pred EEEEECCCEEEEEEE--ECCEEEEECCCHHC-CHHHHHHHHHHHH
T ss_conf 999975997899999--59899997880021-5868999999999
No 76
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.80 E-value=1.1e-18 Score=153.69 Aligned_cols=173 Identities=20% Similarity=0.362 Sum_probs=111.5
Q ss_pred EEEEEECCCCHH---HHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCCC---HHHHHCCC
Q ss_conf 699998897057---8899888865940698528989889972399799998538899999--997537---68980899
Q gi|254780414|r 9 KVLIIDFGSQFT---QLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI--DSPQIP---KEILESNI 80 (520)
Q Consensus 9 ~IlIlDfGSQyt---qLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~--~ap~~~---~~I~~~~i 80 (520)
+|=||.+=.-+. +.+.|.++.+|+.+|+..-. +.+++. +.+++||.||..+..-. ....+. ++..+.++
T Consensus 2 ~igvlalqG~~~~hi~sl~kAl~~lg~~~e~~~v~-~p~~l~--~~d~LILPGG~f~~~m~~L~~~gl~~~i~~~i~~g~ 78 (196)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGINGEVVRVR-RPEDLK--DCDALIIPGGESTTIGRLMKRYGILDEIKEKIEEGL 78 (196)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEC-CHHHHH--CCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 59999724799999999999999829990599969-989983--199799899667999999888688899999997699
Q ss_pred CEEEECHHHHHHHHHCC------------CEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCC
Q ss_conf 88997789999899709------------699986986610366752388622278726655336860022011012444
Q gi|254780414|r 81 PLLGICYGQQIMCQSLG------------GKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEG 148 (520)
Q Consensus 81 PILGICyG~QlLa~~~G------------G~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~g 148 (520)
|+||||+|||+|+.... |+|.+.. ||+..-.. .....+.++ ......|..|++++.+.++.
T Consensus 79 PiLGIClGmQLL~~~s~e~~~~~GLG~i~g~V~rn~---~g~q~~s~-~~~~~~~~~---~~~~~~yFVhs~~~~~~~~~ 151 (196)
T PRK13527 79 PILGTCAGLILLAKEVDDEVVQPLLGLMDVTVNRNA---FGRQRDSF-EAELDLEGL---DGPFHAVFIRAPAIDEAGGD 151 (196)
T ss_pred CEEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEECC---CCCCCCCC-CCCEEECCC---CCCEEEEEEEEEEEECCCCC
T ss_conf 779970879998663156777677675754899657---88745555-166441478---99968999974235027998
Q ss_pred CCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf 2112323983178898635001124652122215202577998755010
Q gi|254780414|r 149 FEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 149 f~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
.+++|++++.+ +|++. .|+||+|||||.+.. ..+++||+-.+.
T Consensus 152 ~~v~a~~~~~~-~aV~k--~Ni~g~QFHPEkSgd---~~i~~~Fl~~v~ 194 (196)
T PRK13527 152 VEVLAKLDDRI-VAVEQ--GNVLATAFHPELTDD---TRIHEYFLKKVV 194 (196)
T ss_pred EEEEEEECCEE-EEEEE--CCEEEEECCCCCCCC---CHHHHHHHHHHC
T ss_conf 79999979999-99998--999999559722387---559999999971
No 77
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.80 E-value=8.7e-19 Score=154.49 Aligned_cols=170 Identities=16% Similarity=0.300 Sum_probs=112.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCCCH---HHHHCCCCE
Q ss_conf 86999988970578899888865940698528989889972399799998538899999--9975376---898089988
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI--DSPQIPK---EILESNIPL 82 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~--~ap~~~~---~I~~~~iPI 82 (520)
-||-|||+...+ +...|.++.+|+.+.+. .+.+++.. .+++||.||-++.... ....+.. +..+.+.|+
T Consensus 2 ~~IGvl~~qGn~-rs~~~aL~~lG~~~~~v---~~~~di~~--ad~lILPGG~s~am~~ll~~~gl~~~i~~~i~~gkP~ 75 (191)
T PRK13525 2 MKIGVLALQGAV-REHIAALEALGAEAVEV---RRPEDLDE--IDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPV 75 (191)
T ss_pred CEEEEEECCCCH-HHHHHHHHHCCCCEEEE---CCHHHHHH--CCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf 379999647889-99999999879978998---99999953--9989978976589999999868689999999849985
Q ss_pred EEECHHHHHHHHHC-----------CCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCE
Q ss_conf 99778999989970-----------9699986986610366752388622278726655336860022011012444211
Q gi|254780414|r 83 LGICYGQQIMCQSL-----------GGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEV 151 (520)
Q Consensus 83 LGICyG~QlLa~~~-----------GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~v 151 (520)
||||+|||+|+... -|+|.+.. ||+. +.....+..+.++. ....++.-|+.++...+++..+
T Consensus 76 LGIClGmqLL~~~~E~~~~~gLGli~g~V~Rn~---~grq-~~s~~~~~~~~~~~---~~~~~yFvhsp~~~~~~~~~~~ 148 (191)
T PRK13525 76 FGTCAGMILLAKEIEGPEQEHLGLLDITVRRNA---FGRQ-VDSFEAELDIKGLG---DPFPAVFIRAPYIERVGPGVEV 148 (191)
T ss_pred EEECHHHHEEEECCCCCCCCCCCCCCCEEEECC---CCCC-CCCCCCCCCCCCCC---CCCCEEEEECCEEEECCCCCEE
T ss_conf 762221211120233589777677883786346---4751-44442676366889---9845899708888044999489
Q ss_pred EECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf 2323983178898635001124652122215202577998755010
Q gi|254780414|r 152 IASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 152 iA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
+|...+.++ |++ ..|+||+|||||.+. +..|++||+ +++
T Consensus 149 ~a~~g~~~v-aV~--~~Nv~g~QFHPEkSg---~~~i~~~Fl-~~v 187 (191)
T PRK13525 149 LARVGGRIV-AVR--QGNILATSFHPELTD---DRRVHRYFL-DMV 187 (191)
T ss_pred EEEECCEEE-EEE--ECCEEEEEECCCCCC---CCHHHHHHH-HHH
T ss_conf 999899999-999--899999980993059---837999999-999
No 78
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.77 E-value=5.1e-18 Score=149.02 Aligned_cols=166 Identities=22% Similarity=0.375 Sum_probs=106.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC-CCC-CCCC-CCCCCCCHHHHH-CCCCEEE
Q ss_conf 69999889705788998888659406985289898899723997999985-388-9999-999753768980-8998899
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG-SPA-SSLD-IDSPQIPKEILE-SNIPLLG 84 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG-GP~-SV~d-~~ap~~~~~I~~-~~iPILG 84 (520)
.|.|+|||+---+.+.|.++.+|+.+.|. .+.+++. +.+.+||.| |.. ++.+ -..-.++..+.+ .+.|+||
T Consensus 1 MI~IIDyG~GNi~Sv~~al~~lg~~~~i~---~~~~~i~--~~d~lILPGVGsF~~am~~L~~~~l~~~i~~~~~kpiLG 75 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVS---NTSKIID--QAETIILPGVGHFKDAMSEIKRLNLNAILAKNTDKKMIG 75 (192)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEE
T ss_conf 98999769458999999999859987996---8999984--379589757687899999988758599999862898589
Q ss_pred ECHHHHHHHHH-----------CCCEEEECCC----CCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCC
Q ss_conf 77899998997-----------0969998698----66103667523886222787266553368600220110124442
Q gi|254780414|r 85 ICYGQQIMCQS-----------LGGKTKNSQS----REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGF 149 (520)
Q Consensus 85 ICyG~QlLa~~-----------~GG~V~~~~~----~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf 149 (520)
||+|||+|... +-|+|.+-+. +.-||.++.. ..+++. ..++.-|++.+. ..-
T Consensus 76 ICLGMQlL~~~SeEg~~~GLgli~G~V~kl~~~~~vPhmGWn~v~~--~~~~~~--------~~fYFvHSY~~~---~~~ 142 (192)
T PRK13142 76 ICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVS--KHPMLN--------QDVYFVHSYQAP---MSE 142 (192)
T ss_pred EECCEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCEECCHHHCC--CCCCCC--------CCEEEEEEEECC---CCC
T ss_conf 6501014311455567677577868999836899786658156253--385423--------644799876527---875
Q ss_pred CEEECCCC-CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Q ss_conf 11232398-3178898635001124652122215202577998755
Q gi|254780414|r 150 EVIASSDS-TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 (520)
Q Consensus 150 ~viA~S~~-~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~ 194 (520)
.++|.|+. ..+.|+-. ..++||+|||||-+ ...|.++|+||+.
T Consensus 143 ~~~a~t~yg~~f~s~v~-~~Ni~G~QFHPEKS-~~~Gl~lLknFl~ 186 (192)
T PRK13142 143 NVIAYAQYGADIPAIVQ-FNNYIGIQFHPEKS-GTYGLQILRQAIQ 186 (192)
T ss_pred CEEEEEECCCEEEEEEE-ECCEEEEECCHHHC-CHHHHHHHHHHHC
T ss_conf 78999988996999999-59999995881235-5858999999963
No 79
>KOG3179 consensus
Probab=99.76 E-value=4.6e-18 Score=149.35 Aligned_cols=159 Identities=24% Similarity=0.358 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHHHCCCEE---EEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH------HHHHCCCCEEEE
Q ss_conf 89705788998888659406---985289898899723997999985388999999975376------898089988997
Q gi|254780414|r 15 FGSQFTQLIARRVRESKVYC---EVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPK------EILESNIPLLGI 85 (520)
Q Consensus 15 fGSQytqLIaRriRelgVys---eI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~------~I~~~~iPILGI 85 (520)
||. |.-.-..-+-+-|.-- +++..+-|-++ +..++.|+++||++.+.++ +++|+.+ ++...++|||||
T Consensus 23 yGg-y~nvfvsllg~ege~wd~frV~~gefP~~~-Dl~ky~gfvIsGS~~dAf~-d~dWI~KLcs~~kkld~mkkkvlGI 99 (245)
T KOG3179 23 YGG-YFNVFVSLLGDEGEQWDLFRVIDGEFPQEE-DLEKYDGFVISGSKHDAFS-DADWIKKLCSFVKKLDFMKKKVLGI 99 (245)
T ss_pred HCC-HHHHHHHHHCCCCCEEEEEEEECCCCCCHH-HHHHHCEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 157-999999986135721578998548788744-6534154999577433335-4069999999999987515664788
Q ss_pred CHHHHHHHHHCCCEEEECCCC-CCCEEEEEECC----CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCE
Q ss_conf 789999899709699986986-61036675238----8622278726655336860022011012444211232398317
Q gi|254780414|r 86 CYGQQIMCQSLGGKTKNSQSR-EFGRAFIEIKK----NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPF 160 (520)
Q Consensus 86 CyG~QlLa~~~GG~V~~~~~~-EyG~~~I~i~~----~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~i 160 (520)
|+|||+||.+.||+|.+++++ +.|-..+.+.+ ....|..++..-+-..+ |.|.|.++|++++++|+|++|.+
T Consensus 100 CFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~~~yFG~~~~~l~Iikc---HqDevle~PE~a~llasSe~cev 176 (245)
T KOG3179 100 CFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKC---HQDEVLELPEGAELLASSEKCEV 176 (245)
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHH---CCCCEECCCCHHHHHCCCCCCCE
T ss_conf 211799988617811027888744434238998524616432643444218765---31014337744543000011525
Q ss_pred EEEEECCCCEEEEEEEEHHH
Q ss_conf 88986350011246521222
Q gi|254780414|r 161 AFIADEKRKYYAVQFHPEVV 180 (520)
Q Consensus 161 aai~~~~~~iyGVQFHPEV~ 180 (520)
+.+...+ +++++|-|||-.
T Consensus 177 e~fs~~~-~~l~fQGHPEyn 195 (245)
T KOG3179 177 EMFSIED-HLLCFQGHPEYN 195 (245)
T ss_pred EEEEECC-EEEEECCCCHHH
T ss_conf 7898345-379962882343
No 80
>pfam01174 SNO SNO glutamine amidotransferase family. This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680.
Probab=99.73 E-value=2.7e-17 Score=143.85 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=94.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCC----CCHHHHHCCCCEEEECHHHHHHHH
Q ss_conf 8899888865940698528989889972399799998538899999--9975----376898089988997789999899
Q gi|254780414|r 21 QLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI--DSPQ----IPKEILESNIPLLGICYGQQIMCQ 94 (520)
Q Consensus 21 qLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~--~ap~----~~~~I~~~~iPILGICyG~QlLa~ 94 (520)
+...|.++.+|+..+++ .+.+++.. .+++||.||-+..... .... +...+.+.++|+||||+|||+|+.
T Consensus 9 ~sv~nal~~lG~e~~~v---~~p~di~~--ad~LILPGg~s~~~~~ll~~~gl~~~l~e~i~~~~kPiLGIClGMqLL~~ 83 (188)
T pfam01174 9 EEHEEAIKKCGAENKTV---KRPEDLAQ--CDALIIPGGESTAMSLLAKRYGFYEPLYEFVHNPNKPIWGTCAGLILLSK 83 (188)
T ss_pred HHHHHHHHHCCCCEEEE---CCHHHHHC--CCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf 99999999869987996---89999940--89899889887999999998688899999998079966333144642110
Q ss_pred HCC-----------CEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECC-CCCCEEE
Q ss_conf 709-----------6999869866103667523886222787266553368600220110124442112323-9831788
Q gi|254780414|r 95 SLG-----------GKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASS-DSTPFAF 162 (520)
Q Consensus 95 ~~G-----------G~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S-~~~~iaa 162 (520)
... |+|++.. +|+.. .....+..|.++......+. -|+.++...++.-.+.+.+ -+..+++
T Consensus 84 ~~e~g~~~gLGli~~~V~r~~---~g~~~-~~~~~~~~~~~~~~~~~~yF---vhs~~~~~~~~~~~v~~~~~~~~~~v~ 156 (188)
T pfam01174 84 QLGNELVKTLGLLKVTVKRNA---FGRQV-DSFEKECDFKNLIPKFPGVF---IRAPVIEEILDPEVVVVLYELDGKIVV 156 (188)
T ss_pred CCCCCCCCCCCCCCEEEEECC---CCCCC-CCCCCCCCCCCCCCCCEEEE---EECCEECCCCCCCEEEEEEECCCEEEE
T ss_conf 247786442465322687657---67546-55447863326899943999---817745104998529999957999999
Q ss_pred EEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 9863500112465212221520257799875
Q gi|254780414|r 163 IADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 163 i~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
++ ..++||+|||||-+. ++..+.++|+
T Consensus 157 v~--~~Ni~g~QFHPEKS~--d~~~~~~~fl 183 (188)
T pfam01174 157 AK--QGNILATSFHPELAE--DDYRVHDWFV 183 (188)
T ss_pred EE--ECCEEEEECCCEECC--CCCHHHHHHH
T ss_conf 99--899999951984579--9788999999
No 81
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=99.70 E-value=8.3e-16 Score=133.20 Aligned_cols=187 Identities=21% Similarity=0.310 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 0678999999997650---444036640564047799999986223-656999973895515627899998862369857
Q gi|254780414|r 205 MSSYHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPL 280 (520)
Q Consensus 205 ~~~~~~~~i~~Ir~~v---g~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l 280 (520)
++...+..+.-||+.+ |-++|++|||||+||+|+|+|..+|+| ++++|++...+.-.....+....+ .+.+|++.
T Consensus 3 ~~~~~~~lv~~l~~y~~~~g~~~~viGlSGGIDSav~a~La~~Alg~~~v~~v~mP~~~ss~~s~~~A~~l-a~~lgi~~ 81 (248)
T cd00553 3 LEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKEL-AEALGIEH 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH-HHHHCCCE
T ss_conf 89999999999999999819991999588889999999999997288759998899978987589999999-99958916
Q ss_pred EEEEHHH---HHHHHHCCCCCHHHHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEE
Q ss_conf 9975889---999996689888999988756589999----999974399709986462202454202467776303443
Q gi|254780414|r 281 RVVDASE---RFIRKLKNIVDPETKRKVIGQLFIEVF----EEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSH 353 (520)
Q Consensus 281 ~~vda~~---~Fl~~L~gv~DPE~KRkiIG~~Fi~vf----~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsH 353 (520)
..+|-+. .|.+.+....+++......||.=-++- ...|++ ..+|+-||- +.-|...+. -|.
T Consensus 82 ~~i~I~~~~~~~~~~~~~~~~~~~~~~~~~NiqaRlRm~~Ly~~An~---~~~lVlgTg--NksE~~~Gy-------~Tk 149 (248)
T cd00553 82 VNIDIDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANK---LGGLVLGTG--NKSELLLGY-------FTK 149 (248)
T ss_pred EEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEECCC--CHHHHHHCC-------CEE
T ss_conf 87155999999999864404870556787424878889999999974---499896287--460787572-------100
Q ss_pred ECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHH
Q ss_conf 023201132032022378987389999999981999889426888983111221000367899
Q gi|254780414|r 354 HNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERI 416 (520)
Q Consensus 354 HNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~ 416 (520)
+-.+ . -=+.|+.+|||.|||+|++.||+|++++.|.|=|+ |.- |--.++-+
T Consensus 150 yGD~------~-~d~~Pi~~L~Kt~V~~la~~l~vp~~Ii~k~PSae--L~~---~Q~DE~~l 200 (248)
T cd00553 150 YGDG------A-ADINPIGDLYKTQVRELARYLGVPESIIDKPPSAE--LWP---GQTDEDEL 200 (248)
T ss_pred CCCC------C-CCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCC--CCC---CCCCHHHC
T ss_conf 0787------7-58221368849999999999688898734799966--679---99898775
No 82
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.69 E-value=3.2e-16 Score=136.20 Aligned_cols=164 Identities=15% Similarity=0.318 Sum_probs=97.3
Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCCCHH---HHHCCCCEEEEC
Q ss_conf 9988970578899888865940698528989889972399799998538899999--99753768---980899889977
Q gi|254780414|r 12 IIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI--DSPQIPKE---ILESNIPLLGIC 86 (520)
Q Consensus 12 IlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~--~ap~~~~~---I~~~~iPILGIC 86 (520)
||+.-.-+ +...|.++.+|+.+.+. .+.+++. +.+++||.||-+..... ....+... ..+.+.|+||||
T Consensus 3 vl~lqGn~-~s~~~Al~~lG~~~~~~---~~p~~i~--~ad~LILPGg~s~~~~~~L~~~gl~~~i~~~i~~gkP~LGIC 76 (183)
T cd01749 3 VLALQGDF-REHIRALERLGVEVIEV---RTPEDLE--GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTC 76 (183)
T ss_pred EEEECCCH-HHHHHHHHHCCCCEEEE---CCHHHHH--HCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEHH
T ss_conf 99834789-99999999879979998---9999983--189899889408999999988788899999998499847510
Q ss_pred HHHHHHHHHC------------CCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEEC
Q ss_conf 8999989970------------9699986986610366752388622278726655336860022011012444211232
Q gi|254780414|r 87 YGQQIMCQSL------------GGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIAS 154 (520)
Q Consensus 87 yG~QlLa~~~------------GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~ 154 (520)
+|||+|+..- .|+|.|.. +|+..-... ....+.++. .+.+..+..|+.++.+..+...+++.
T Consensus 77 lGMQlL~~~s~E~g~~~GLGli~g~V~rn~---~g~q~~sf~-~~l~ip~~g--~n~~~~~Fv~sp~~~~~~~~~~~~~~ 150 (183)
T cd01749 77 AGLILLAKEVEDQGGQPLLGLLDITVRRNA---FGRQVDSFE-ADLDIPGLG--LGPFPAVFIRAPVIEEVGPGVEVLAE 150 (183)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEECCC---CCCCCCCCC-CCCCCCCCC--CCCCCEEEECCCEEEECCCCEEEEEE
T ss_conf 778887652346788676365551996356---367666552-575278678--88766699448646005998099999
Q ss_pred CCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 398317889863500112465212221520257799875
Q gi|254780414|r 155 SDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 155 S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.++. ++|++ ..|+||+|||||-+. +..|++|||
T Consensus 151 ~~~~-~~aV~--~~Ni~g~QFHPEKSg---d~~i~~~fl 183 (183)
T cd01749 151 YDGK-IVAVR--QGNVLATSFHPELTD---DTRIHEYFL 183 (183)
T ss_pred ECCE-EEEEE--ECCEEEEECCCCCCC---CCCHHHHHC
T ss_conf 8999-99999--899999947980159---864888639
No 83
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=99.66 E-value=1.5e-15 Score=131.34 Aligned_cols=162 Identities=27% Similarity=0.367 Sum_probs=112.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC--------CHHHHHHHHHHCCCCCEEEEEHHHHHHH-
Q ss_conf 4440366405640477999999862236569999738955156--------2789999886236985799758899999-
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN--------EVENIISLFKGYPNFPLRVVDASERFIR- 291 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn--------E~~~v~~~~~~~~~~~l~~vda~~~Fl~- 291 (520)
.++||++|+||||||||+|+||.++ |-.++++|.-+---..+ +.+..... .+++|+++.++|.++.|-+
T Consensus 3 sk~rV~VamSGGVDSsVaA~LL~~~-Gy~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~v-a~~LgIp~~v~d~~~~f~~~ 80 (355)
T PRK00143 3 SKKRVVVGMSGGVDSSVAAALLKEQ-GYDVIGLFMKLWDDDDGSGGCCAEEDIADARAV-ADKLGIPLYVVDFAKEFWDN 80 (355)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECHHHHHHHH
T ss_conf 8888999916789999999999977-995899999887688777899857889999999-99869857996869987678
Q ss_pred --------HHCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCCC--CCCCCEEEEEEC-CC
Q ss_conf --------966898-8899998875658999--999997439970998646220245420246--777630344302-32
Q gi|254780414|r 292 --------KLKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESISFF--GGPSSIIKSHHN-VG 357 (520)
Q Consensus 292 --------~L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~~~--~~~~~~IKsHHN-vg 357 (520)
-++|.| .|- |..|.+|+. |-+.|+++ +++|+|-|. |.-+.+..+.. ....+.-|-+-= .-
T Consensus 81 Vi~~f~~~Y~~G~TPNPc----v~CN~~IKFg~l~~~A~~l-gad~iATGH-YAri~~~~~~~~L~r~~D~~KDQSYfL~ 154 (355)
T PRK00143 81 VFDYFLDEYKAGRTPNPC----VLCNKEIKFKAFLDYALEL-GADYIATGH-YARIRDEDGRYELLRAVDPNKDQSYFLY 154 (355)
T ss_pred HHHHHHHHHHCCCCCCCC----HHCCCCCCHHHHHHHHHHC-CCCEECCCC-EEEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf 899999999769999973----3408723399999999873-998423352-5999915981899867889887205761
Q ss_pred CHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 011320320223789873899999999819998
Q gi|254780414|r 358 GLPEHMDMKLVEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 358 glp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
.|++..--+++-||-++.|+|||++++++|||-
T Consensus 155 ~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gL~~ 187 (355)
T PRK00143 155 QLTQEQLAKLLFPLGELTKPEVREIAAEIGLPT 187 (355)
T ss_pred CCCHHHHHHEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 057988742075876773589999999758988
No 84
>PRK00876 nadE NAD synthetase; Reviewed
Probab=99.65 E-value=3.8e-15 Score=128.49 Aligned_cols=177 Identities=24% Similarity=0.275 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCC----HHHHHHHHH
Q ss_conf 140678999999997650----444036640564047799999986223-65699997389551562----789999886
Q gi|254780414|r 203 WVMSSYHKEIVSRIKEQV----GNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNE----VENIISLFK 273 (520)
Q Consensus 203 W~~~~~~~~~i~~Ir~~v----g~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE----~~~v~~~~~ 273 (520)
-+++.-++..++-||++| +.+-+++|+||||||||+|+|..+|+| +|++|++ |-..+ +.+--..+.
T Consensus 10 iD~~~e~~riv~fir~~v~~~~~~kG~VlGlSGGIDSAv~a~Lav~AlG~e~V~gl~-----MP~~~s~~~s~~~a~~la 84 (325)
T PRK00876 10 IDAAAEAERIRAFIREQVLGTLKRRGVVLGLSGGIDSSVTLALCVRALGKDRVLGLL-----MPERDSSPDSLRLGRMLA 84 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCHHHHHHHHHHH
T ss_conf 686999999999999999851698679996876888999999999974855169997-----886568877899999999
Q ss_pred HCCCCCEEEEEHHHH------------HHHHHCCCCCHHHHHHHHHHHHHH-----HHHHHHHHC---------------
Q ss_conf 236985799758899------------999966898889999887565899-----999999743---------------
Q gi|254780414|r 274 GYPNFPLRVVDASER------------FIRKLKNIVDPETKRKVIGQLFIE-----VFEEEAKKI--------------- 321 (520)
Q Consensus 274 ~~~~~~l~~vda~~~------------Fl~~L~gv~DPE~KRkiIG~~Fi~-----vf~~~a~~~--------------- 321 (520)
+.+|++...+|.+.. +++.+..--+|-.|.||.-.-|++ ++.-.+.+-
T Consensus 85 ~~lGi~~~~idI~~~l~~~~~y~~~d~~i~~~~p~~~~~~~~~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l 164 (325)
T PRK00876 85 ESLGVEYVVEDISPALEALGCYERRDEAIRRVVPEYGPGWKSKLVLPNFLEGDLLNVPYLVVQDPGGEVRKKRLPPADYL 164 (325)
T ss_pred HHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 98199359984489998754313568888750333242000000023111023223101210464210000135503444
Q ss_pred ---------------------CCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf ---------------------99709986462202454202467776303443023201132032022378987389999
Q gi|254780414|r 322 ---------------------GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVR 380 (520)
Q Consensus 322 ---------------------~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR 380 (520)
....+|.-|| ++--|-.-+ -=|-+-.|+ -=+.||.+|||-|||
T Consensus 165 ~~~a~~NiKaR~RM~~lY~~A~~~n~lVlGT--~NksE~~~G-------yfTKyGDGa-------~Di~PI~~LyKtQV~ 228 (325)
T PRK00876 165 QIVAATNFKQRTRKMVEYYHADRLNYAVAGT--PNRLEYDQG-------FFVKYGDGA-------ADLKPIAHLYKTQVY 228 (325)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCEEECC--CCHHHHHHC-------CEEEECCCC-------CCCCCCCCCCHHHHH
T ss_conf 4555323368999999999998739877658--846556635-------147544788-------784513577589999
Q ss_pred HHHHHHCCCHHHHCCCCCCC
Q ss_conf 99998199988942688898
Q gi|254780414|r 381 LLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 381 ~lg~~Lglp~~~~~RhPFPG 400 (520)
+|++.||+|++++.|-|=++
T Consensus 229 ~LA~~LgvPe~Ii~K~PSad 248 (325)
T PRK00876 229 ALAEYLGVPEEIRRRPPTTD 248 (325)
T ss_pred HHHHHCCCCHHHHCCCCCCC
T ss_conf 99998099999936999813
No 85
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=99.63 E-value=1.2e-15 Score=131.95 Aligned_cols=158 Identities=28% Similarity=0.385 Sum_probs=113.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC--------CCHHHHHHHHHHCCCCCEEEEEHHHHHHH----
Q ss_conf 036640564047799999986223656999973895515--------62789999886236985799758899999----
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRK--------NEVENIISLFKGYPNFPLRVVDASERFIR---- 291 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRk--------nE~~~v~~~~~~~~~~~l~~vda~~~Fl~---- 291 (520)
||++|+||||||||||+||.++ |-.++++|.-+---.. .+.+.+...- +++|+++.++|.++.|-+
T Consensus 1 kV~v~mSGGVDSsvaA~LL~~~-G~~V~gv~m~~w~~~~~~~~C~~~~d~~dA~~va-~~LgIp~~v~d~~~ef~~~V~~ 78 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQ-GYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVA-DQLGIPHYVVNFEKEYWEKVFE 78 (349)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEECHHHHHHHHHHH
T ss_conf 9899907789999999999877-9957999999678876678988677899999999-9869967996809988688899
Q ss_pred -----HHCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCC---CCCCCCEEEEEEC-CCCH
Q ss_conf -----966898-8899998875658999--99999743997099864622024542024---6777630344302-3201
Q gi|254780414|r 292 -----KLKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESISF---FGGPSSIIKSHHN-VGGL 359 (520)
Q Consensus 292 -----~L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~~---~~~~~~~IKsHHN-vggl 359 (520)
-++|.| .|- |..|.+|+. |-+.|+++ +++|+|-|. |.-+.+...+ .....+..|-+-= .-.|
T Consensus 79 ~f~~~Y~~G~TPNPc----v~CN~~IKF~~l~~~A~~~-g~d~iATGH-YAri~~~~~~~~~L~r~~D~~KDQSYfL~~l 152 (349)
T cd01998 79 PFLEEYKKGRTPNPD----ILCNKEIKFGALLDYAKKL-GADYIATGH-YARIEEDNNGRYRLLRGVDPNKDQSYFLSQL 152 (349)
T ss_pred HHHHHHHCCCCCCCC----HHCCCEEEHHHHHHHHHHC-CCCEECCCC-EEEEEECCCCCEEEEECCCCCCCCCEEEECC
T ss_conf 999999748999876----2118735199999999875-998641351-4788975898489987689987820564012
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 132032022378987389999999981999
Q gi|254780414|r 360 PEHMDMKLVEPLKELFKDEVRLLGKELRLP 389 (520)
Q Consensus 360 p~~~~~~liEPl~~l~KdEVR~lg~~Lglp 389 (520)
++..--+++-||-++.|+|||++++++|||
T Consensus 153 ~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 182 (349)
T cd01998 153 SQEQLSRLIFPLGDLTKPEVREIAKELGLP 182 (349)
T ss_pred CHHHHHHEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 487661038788786538999999985999
No 86
>PRK13980 NAD synthetase; Provisional
Probab=99.62 E-value=1.9e-14 Score=123.53 Aligned_cols=175 Identities=23% Similarity=0.314 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHHH---CCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 40678999999997650---444036640564047799999986223-65699997389551562789999886236985
Q gi|254780414|r 204 VMSSYHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFP 279 (520)
Q Consensus 204 ~~~~~~~~~i~~Ir~~v---g~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~ 279 (520)
+.+...+..+.-||+.+ |-++|++|||||+||+|+|+|..+|+| +|++|++.-.-.=. .++.+--+.+.+.+|++
T Consensus 7 d~~~~~~~iv~~lrdy~~~~g~kg~VlGlSGGIDSavva~La~~Alg~~~v~~v~mP~~~ss-~~s~~dA~~la~~lgi~ 85 (264)
T PRK13980 7 DYEKVREIIVDFIREEVEKAGFKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPYRVSP-PEDLEDALLVAERLGIE 85 (264)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCCC
T ss_conf 89999999999999999980998099979868889999999998549660689989899998-87899999999986998
Q ss_pred EEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----HHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 799758899999966898889999887565899999----9997439970998646220245420246777630344302
Q gi|254780414|r 280 LRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFE----EEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHN 355 (520)
Q Consensus 280 l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~----~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHN 355 (520)
...+|-++.|-.-.+.+.+. .+-..||.=-++-. ..|++ ..+|.-|| .+--|..-+. =|.+-
T Consensus 86 ~~~i~I~~~~~~~~~~~~~~--~~~~~~NiqaR~Rm~~Ly~~An~---~~~lVlgT--gNksE~~~Gy-------~TkyG 151 (264)
T PRK13980 86 YKVIEITPIVDAFFSAVPDA--DRLRRGNIMARTRMVLLYDYANR---DNRLVLGT--SNKSELLLGY-------FTKYG 151 (264)
T ss_pred EEEEECHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHHHH---CCCEEECC--CCHHHHHHHH-------CCCCC
T ss_conf 49982799999999863100--06688875898999999998643---39776558--8674798721-------00168
Q ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
Q ss_conf 320113203202237898738999999998199988942688898
Q gi|254780414|r 356 VGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 356 vgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPG 400 (520)
++. -=+.|+.+|||-|||+|++.||+|++++.|-|=||
T Consensus 152 ------D~~-~d~~Pi~dL~Kt~V~~La~~l~vP~~Ii~k~PSa~ 189 (264)
T PRK13980 152 ------DGA-VDINPIGDLYKTQVRELARHLGVPEDIIEKPPSAD 189 (264)
T ss_pred ------CCC-CCHHHHCCCCHHHHHHHHHHHCCCHHHEECCCCCC
T ss_conf ------766-56245258739999999999399664403699977
No 87
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=99.61 E-value=2.4e-15 Score=129.85 Aligned_cols=160 Identities=28% Similarity=0.395 Sum_probs=109.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC---CC------CHHHHHHHHHHCCCCCEEEEEHHHHHHH---
Q ss_conf 03664056404779999998622365699997389551---56------2789999886236985799758899999---
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR---KN------EVENIISLFKGYPNFPLRVVDASERFIR--- 291 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllR---kn------E~~~v~~~~~~~~~~~l~~vda~~~Fl~--- 291 (520)
||++|+||||||||||+||.++ |-.++++|.-+---. .+ +.+..... .+++|+++.++|.++.|-+
T Consensus 2 kV~VamSGGVDSsVaA~LL~~~-Gy~V~Gv~m~~w~~~~~~~~~C~~~~d~~dA~~v-a~~LgIp~~v~d~~~~f~~~Vi 79 (354)
T pfam03054 2 KVVVAMSGGVDSSVAAYLLKEQ-GYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRV-CEQLGIPLYVVNFEKEYWEKVF 79 (354)
T ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECHHHHHHHHHH
T ss_conf 6999904789999999999977-9963999999566887667889988999999999-9986997899787998758999
Q ss_pred ------HHCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCC--CCCCCCEEEEEEC-CCCH
Q ss_conf ------966898-8899998875658999--99999743997099864622024542024--6777630344302-3201
Q gi|254780414|r 292 ------KLKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESISF--FGGPSSIIKSHHN-VGGL 359 (520)
Q Consensus 292 ------~L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~~--~~~~~~~IKsHHN-vggl 359 (520)
-.+|.| .|- |..|.+|+. |-+.|++.-+++|+|-|. |.-+.+..+. .....+.-|-+-= .-.|
T Consensus 80 ~~fv~~Y~~G~TPNPc----v~CN~~IKFg~l~~~A~~~lGad~iATGH-YAri~~~~~~~~L~r~~D~~KDQSYfL~~l 154 (354)
T pfam03054 80 EPFLDEYKNGRTPNPD----ILCNREIKFGALLDYAKQVLGADYLATGH-YARVSLNENESELLRGKDKNKDQSYFLSGL 154 (354)
T ss_pred HHHHHHHHCCCCCCCC----HHHCCCCCHHHHHHHHHHHCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCCCCEEEECC
T ss_conf 9999999769999841----44189643899999999866998104474-289990499389998999999801786107
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 1320320223789873899999999819998
Q gi|254780414|r 360 PEHMDMKLVEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 360 p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
++..--+++-||-++.|+|||++++++|||-
T Consensus 155 ~q~~L~~~lFPLG~~~K~eVR~iA~~~gL~~ 185 (354)
T pfam03054 155 SQEQLEKLLFPLGDLTKEEVRKIAKEAGLPT 185 (354)
T ss_pred CHHHHHHEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987643182876885289999999769988
No 88
>PRK00768 nadE NAD synthetase; Reviewed
Probab=99.60 E-value=2.7e-14 Score=122.38 Aligned_cols=187 Identities=22% Similarity=0.217 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHCCC----------CEEE
Q ss_conf 577998755010644111406789999999976504---440366405640477999999862236----------5699
Q gi|254780414|r 186 SQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVG---NERVICAVSGGVDSTVAAFLIYEAIGI----------NLTC 252 (520)
Q Consensus 186 ~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg---~~kVi~~lSGGVDStV~A~Ll~kAig~----------~l~~ 252 (520)
.+|.++| +.+|+++++..++..++-||+.+. -+.|++|||||+||+|+|+|+.+|++. ++++
T Consensus 6 ~~~~~~~-----~~~p~~~~~~~i~~iv~~Lrdyv~k~g~~g~VlGLSGGIDSAvta~L~~~Av~al~~~~~~~~~~~ia 80 (274)
T PRK00768 6 QQIIAEL-----GVKPTIDPEEEIRRRVDFLKDYLKKSGLKTLVLGISGGQDSTLAGRLAQLAVEELRAETGDASYQFIA 80 (274)
T ss_pred HHHHHHC-----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999981-----99999998999999999999999984998399818857688999999999999865304766422689
Q ss_pred EEECCCCCCCCCHHHHHHHHHHCCCC-CEEEE---EHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH----HHHHHCCCC
Q ss_conf 99738955156278999988623698-57997---58899999966898889999887565899999----999743997
Q gi|254780414|r 253 VLVDHGFMRKNEVENIISLFKGYPNF-PLRVV---DASERFIRKLKNIVDPETKRKVIGQLFIEVFE----EEAKKIGGA 324 (520)
Q Consensus 253 vfVD~GllRknE~~~v~~~~~~~~~~-~l~~v---da~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~----~~a~~~~~~ 324 (520)
+..-.+- ...| +...... +.++. ....+ .+-+.|++.++...++.. .-..||+=-++-. -.|++ .
T Consensus 81 v~mP~~~-~~~~-~da~~~~-~~i~~~~~~~i~I~~~~d~~~~~l~~~~~~~~-d~~~~NiqaRiRM~~LY~~An~---~ 153 (274)
T PRK00768 81 VRLPYGV-QADE-DDAQDAL-AFIQPDEVLTVNIKPAVDASVAALRAAGIELS-DFVKGNIKARERMIAQYAIAGA---R 153 (274)
T ss_pred EECCCCC-CCCH-HHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHC---C
T ss_conf 7689886-5799-9999998-52276604886170999999999987277511-6788885798999999999827---8
Q ss_pred EEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
Q ss_conf 0998646220245420246777630344302320113203202237898738999999998199988942688898
Q gi|254780414|r 325 QFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 325 ~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPG 400 (520)
.+|.-|| ..--|..-+. =|-+-.|+ -=+.|+.+|||-|||+|++.||+|++++.+-|=+|
T Consensus 154 g~LVlGT--gNksE~~vGY-------fTkYGDg~-------~Di~PI~dL~KteV~~lA~~LgvP~~Ii~k~PSA~ 213 (274)
T PRK00768 154 GGLVVGT--DHAAEAITGF-------FTKFGDGG-------ADLLPLFGLNKRQGRALLAALGAPEHLYEKVPTAD 213 (274)
T ss_pred CCEEECC--CCHHHHHCCC-------EEEECCCC-------CCHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 9988648--8640444085-------01026775-------17376325619999999999597999836898997
No 89
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.53 E-value=4.1e-14 Score=121.09 Aligned_cols=186 Identities=16% Similarity=0.260 Sum_probs=112.0
Q ss_pred CCCCH-HHHHHHHHHHCCCEEEEECCCCCHHHHHH--CCCCEEEECCCCCCCCCCCCCCCCHHHHH----C-----CCCE
Q ss_conf 89705-78899888865940698528989889972--39979999853889999999753768980----8-----9988
Q gi|254780414|r 15 FGSQF-TQLIARRVRESKVYCEVIAFKNALDYFKE--QNPQAIILSGSPASSLDIDSPQIPKEILE----S-----NIPL 82 (520)
Q Consensus 15 fGSQy-tqLIaRriRelgVyseI~P~~~~~e~i~~--~~p~GIILSGGP~SV~d~~ap~~~~~I~~----~-----~iPI 82 (520)
+|.+| .-.=++-+.-.|....-+|++.+.+++.. ....||+|.||.......+-.+..+.+++ . --||
T Consensus 16 ~~~sYIaASYVK~lEsaGArVVPI~~~~~~~~~~~l~~~INGvLfpGG~~~~~~s~y~~~~~~i~~~A~e~Nd~G~yFPi 95 (273)
T cd01747 16 TGHSYIAASYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPV 95 (273)
T ss_pred CCCEEEEHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 78747608989999978986998746999899999987546799678662056670899999999999998508995633
Q ss_pred EEECHHHHHHHHHCCCE--EEECCCCCCCEEEEEECC---CCCCCCCCCCC-----CCCEEEEEECCCHHH--------C
Q ss_conf 99778999989970969--998698661036675238---86222787266-----553368600220110--------1
Q gi|254780414|r 83 LGICYGQQIMCQSLGGK--TKNSQSREFGRAFIEIKK---NCSLLKGMWEK-----GSKQQVWMSHGDQVE--------H 144 (520)
Q Consensus 83 LGICyG~QlLa~~~GG~--V~~~~~~EyG~~~I~i~~---~~~lf~gl~~~-----~~~~~VwmSH~D~V~--------~ 144 (520)
+|+|+|+|+|.....|. +...-..+.-..+++.++ .+.+|.+++.. .....+..+|...|+ .
T Consensus 96 wGtCLGFelL~~~~s~~~~~l~~~~s~n~~~pL~ft~~~~~Srlf~~~~~~l~~~l~~~~~t~n~H~~gitp~~f~~~~~ 175 (273)
T cd01747 96 WGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGL 175 (273)
T ss_pred EEEHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHH
T ss_conf 33303099999997399612310267773301014467644637651999999998507600433054167888745688
Q ss_pred CCCCCCEEECCCC----CCEEEEEECCCCEEEEEEEEHHH-----------CCCHHHH---HHHHHHHHHCCCC
Q ss_conf 2444211232398----31788986350011246521222-----------1520257---7998755010644
Q gi|254780414|r 145 IPEGFEVIASSDS----TPFAFIADEKRKYYAVQFHPEVV-----------HTVGGSQ---LIDNFVHHVAGIQ 200 (520)
Q Consensus 145 lP~gf~viA~S~~----~~iaai~~~~~~iyGVQFHPEV~-----------hT~~G~~---iL~NFl~~Ic~~~ 200 (520)
+-+-|++++.+.+ .-|+.|++++.|+||+|||||.. ||..+.+ -+-||..+.|.-.
T Consensus 176 L~~~f~ilstn~D~~g~eFVStiE~k~YP~yg~QfHPEK~~FEw~~~~~i~Hs~~ai~~sq~~a~fFV~eaRkn 249 (273)
T cd01747 176 LSDFFNVLTTNDDWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKS 249 (273)
T ss_pred HHHHHEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87442656877659998898863032476466740687576555776789989999999999999999999638
No 90
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.4e-13 Score=114.56 Aligned_cols=161 Identities=27% Similarity=0.388 Sum_probs=110.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC---CHH----HHHHHHHHCCCCCEEEEEHHHHHHHH--
Q ss_conf 440366405640477999999862236569999738955156---278----99998862369857997588999999--
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN---EVE----NIISLFKGYPNFPLRVVDASERFIRK-- 292 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn---E~~----~v~~~~~~~~~~~l~~vda~~~Fl~~-- 292 (520)
..||++|+||||||||+|.||++. |-++.++|..++.=+.+ .++ .+.. -.+.+|+++.++|-+++|.++
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~Q-GyeViGl~m~~~~~~~~~~C~s~~d~~da~~-va~~LGIp~~~vdf~~~y~~~V~ 80 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQ-GYEVIGLFMKNWDEDGGGGCCSEEDLRDAER-VADQLGIPLYVVDFEKEFWNKVF 80 (356)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCCHHHHHHHHH-HHHHHCCCEEEECHHHHHHHHHH
T ss_conf 767999905777899999999976-9749999999641478886772567899999-99980995599846899888888
Q ss_pred -------HCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHC--CCCCCCCEEEEEECC-CCH
Q ss_conf -------66898-8899998875658999--9999974399709986462202454202--467776303443023-201
Q gi|254780414|r 293 -------LKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESIS--FFGGPSSIIKSHHNV-GGL 359 (520)
Q Consensus 293 -------L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~--~~~~~~~~IKsHHNv-ggl 359 (520)
..|-| .|- |..|.+|+. |-+.|.++ +++|+|-|. |.-+-++.. ....+.+..|-.-=. -.+
T Consensus 81 ~~f~~~Y~~G~TPNPc----i~CN~~iKF~~~l~~a~~l-gad~iATGH-Yar~~~~~~~~~l~r~~D~~KDQsYfL~~~ 154 (356)
T COG0482 81 EYFLAEYKAGKTPNPC----ILCNKEIKFKALLDYAKEL-GADYIATGH-YARQREDEGIELLLRGVDLNKDQSYFLYAL 154 (356)
T ss_pred HHHHHHHHCCCCCCCC----HHCCHHHHHHHHHHHHHHC-CCCEEEEEE-EEEEECCCCCCCCCCCCCCCCCHHHEECCC
T ss_conf 8778998579999965----1048788999999999975-998578744-676543776000146787420300020126
Q ss_pred -HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf -13203202237898738999999998199988
Q gi|254780414|r 360 -PEHMDMKLVEPLKELFKDEVRLLGKELRLPDS 391 (520)
Q Consensus 360 -p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~ 391 (520)
++.+. +++-||-+|-|.|||+++.+.|||-.
T Consensus 155 ~~~ql~-~~lFPlG~l~K~evR~iA~~~gL~~a 186 (356)
T COG0482 155 SQEQLE-RLLFPLGDLEKLEVRPIAAEKGLPTA 186 (356)
T ss_pred CHHHHH-HCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 887775-32256777777899999997599766
No 91
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.48 E-value=5.6e-12 Score=105.81 Aligned_cols=188 Identities=30% Similarity=0.410 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHH
Q ss_conf 99999997650444-03664056404779999998622365699997389551562789999886236985799758899
Q gi|254780414|r 210 KEIVSRIKEQVGNE-RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASER 288 (520)
Q Consensus 210 ~~~i~~Ir~~vg~~-kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~ 288 (520)
.+.++.+++-.++. ||+.|.|||||||++|.+..+|+|++..|+.||...+-..|.+.....-++ .|++-.+++....
T Consensus 4 ~~Kl~~l~~~ik~~~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~-iGi~H~~i~~~~~ 82 (269)
T COG1606 4 LSKLERLKKAIKEKKKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKE-IGIRHEFIKMNRM 82 (269)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHH-HCCCCEEEEHHHC
T ss_conf 799999999986437399996588427999999999735646999971687776660678999999-4876246550002
Q ss_pred HHHHHCCCCCHHHHHHHHHH------HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHH
Q ss_conf 99996689888999988756------589999999974399709986462202454202467776303443023201132
Q gi|254780414|r 289 FIRKLKNIVDPETKRKVIGQ------LFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEH 362 (520)
Q Consensus 289 Fl~~L~gv~DPE~KRkiIG~------~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~ 362 (520)
+||-+.+-.-+ .+.++.-++|.+. +.+..+-||=+.|+-+- .-|+--.
T Consensus 83 ---------~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~-Gyd~V~dGtNasDl~~~----------------RPG~rA~ 136 (269)
T COG1606 83 ---------DPEFKENPENRCYLCKRAVYSTLVEEAEKR-GYDVVADGTNASDLFDY----------------RPGLRAL 136 (269)
T ss_pred ---------CHHHCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCCHHHHCCC----------------CCCHHHH
T ss_conf ---------523304998735577899999999999973-99889747757873378----------------8302357
Q ss_pred HCCCHHHHHHHH--HHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHHHH
Q ss_conf 032022378987--3899999999819998894268889831112210--00367899999999999999
Q gi|254780414|r 363 MDMKLVEPLKEL--FKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCI--GEITEERINILRESDAIYRE 428 (520)
Q Consensus 363 ~~~~liEPl~~l--~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~--g~vt~e~~~i~r~ad~i~~~ 428 (520)
-.+.+-.||.++ -|-|+|++++.|||| ++|-=+++=|+.|+. -|+|.|++..+-+|....++
T Consensus 137 kE~gi~sPl~e~gitk~eIre~a~~lgl~----~~~kp~~aCl~sr~p~g~ei~~e~l~kv~~ae~~l~~ 202 (269)
T COG1606 137 KELGIRSPLAEFGITKKEIREIAKSLGLP----TWDKPSMACLASRIPYGEEITVEDLKKVEEAEEFLRE 202 (269)
T ss_pred HHCCCCCHHHHHCCCHHHHHHHHHHCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 76077771888397599999999975998----4558654332000677765668889988999999998
No 92
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; InterPro: IPR004506 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (2.1.1.61 from EC) catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; GO: 0004808 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.47 E-value=4.3e-13 Score=113.78 Aligned_cols=162 Identities=28% Similarity=0.409 Sum_probs=114.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC----------CCH-------HHHH--HHHHHCCCCCEEEE
Q ss_conf 4036640564047799999986223656999973895515----------627-------8999--98862369857997
Q gi|254780414|r 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRK----------NEV-------ENII--SLFKGYPNFPLRVV 283 (520)
Q Consensus 223 ~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRk----------nE~-------~~v~--~~~~~~~~~~l~~v 283 (520)
+||++||||||||||+|+||++- |.++.|||.-+=.+.. ||. +... +..-++||+++..+
T Consensus 1 ~kv~VglSGGVDSSVsA~lL~~q-g~~v~G~ylk~W~~~~~~d~~GH~~~N~~K~~C~~~~dl~~a~~ic~~LGi~l~~~ 79 (394)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQQ-GYEVVGVYLKNWDEDEKNDILGHKKINENKSGCSSAEDLRDAQAICEKLGIPLEKV 79 (394)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEEEEEECCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 94899806854789999999714-96589998776512466664431656246778836887999999998559818985
Q ss_pred EHHHHHHHH---------HCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCC--CCEEEEECCCCCH---HHHHHCC--CC
Q ss_conf 588999999---------66898-8899998875658999--999997439--9709986462202---4542024--67
Q gi|254780414|r 284 DASERFIRK---------LKNIV-DPETKRKVIGQLFIEV--FEEEAKKIG--GAQFLGQGTLYPD---VIESISF--FG 344 (520)
Q Consensus 284 da~~~Fl~~---------L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~--~~~~L~QGTlypD---vIES~~~--~~ 344 (520)
|-.+.|.++ =+|.| .|. |..|-||+. |-+.+++.. +.+++|-|. |.= .+|+.+. ..
T Consensus 80 nf~~~Y~~~Vf~~~i~~y~~G~TPnPD----i~CN~~iKFG~~~e~~~~~~Gtg~~~~aTGH-YAr~~q~~~~~~~~~L~ 154 (394)
T TIGR00420 80 NFQKEYWNKVFEPFIQEYKEGLTPNPD----ILCNKLIKFGLLLEYAKQLLGTGNDKIATGH-YARIAQEIENKSLFELL 154 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCCCHHHHHHHHHHHCCCCCCEEECCH-HHHHHHHHCCCCHHHHH
T ss_conf 507887888889999987367777862----0047120037899999985289954344244-76544342131014443
Q ss_pred CCCCEEEEEECC-CCH-HHHHCCCHHHHHHHHHHHHHHHHHHHHC--CCHH
Q ss_conf 776303443023-201-1320320223789873899999999819--9988
Q gi|254780414|r 345 GPSSIIKSHHNV-GGL-PEHMDMKLVEPLKELFKDEVRLLGKELR--LPDS 391 (520)
Q Consensus 345 ~~~~~IKsHHNv-ggl-p~~~~~~liEPl~~l~KdEVR~lg~~Lg--lp~~ 391 (520)
-+-+..|=.-== --| ++.|. +++-||-+|-|-|||.|++.++ ||..
T Consensus 155 ~~~D~~KDQSYFL~~l~~~~~~-~~~FPlG~L~K~~vR~iA~~~~PfL~ta 204 (394)
T TIGR00420 155 RALDKNKDQSYFLYHLSQEQLA-KLLFPLGELLKPEVRQIAKNAGPFLSTA 204 (394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 0467888611737640189888-7505301036778999998648632344
No 93
>PTZ00323 NAD+ synthase; Provisional
Probab=99.44 E-value=1.2e-11 Score=103.37 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHCC-CCE-----EEEEEC
Q ss_conf 5779987550106441114067899999999765044---4036640564047799999986223-656-----999973
Q gi|254780414|r 186 SQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGN---ERVICAVSGGVDSTVAAFLIYEAIG-INL-----TCVLVD 256 (520)
Q Consensus 186 ~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~---~kVi~~lSGGVDStV~A~Ll~kAig-~~l-----~~vfVD 256 (520)
.+||+-+ ++++.++++..|+..+.-+|+.+.. +.|++|+|||+||+|+|+|..+|+| +|. ++++
T Consensus 12 ~~ii~e~-----~~~~~~dp~~eI~~rv~fLrDYv~k~GfkgvVLGlSGGIDSAl~aaLA~~Alg~env~~~r~~gv~-- 84 (294)
T PTZ00323 12 QRVLEEY-----RRTRAFDPVAWIEMKCAKLNEYMRRCGLKACVTSVSGGIDSAVVLALCSRAMRMPNSPIVRNVGIC-- 84 (294)
T ss_pred HHHHHHH-----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE--
T ss_conf 9999996-----888888989999999999999999829985999586369999999999998655457530356776--
Q ss_pred CCCCCCCCHH----HHHHHHHHCCCCCEEEEEHHHH---HHH---HHCCCCCHHHHHHHHHHHHHHHHH----HHHHHC-
Q ss_conf 8955156278----9999886236985799758899---999---966898889999887565899999----999743-
Q gi|254780414|r 257 HGFMRKNEVE----NIISLFKGYPNFPLRVVDASER---FIR---KLKNIVDPETKRKVIGQLFIEVFE----EEAKKI- 321 (520)
Q Consensus 257 ~GllRknE~~----~v~~~~~~~~~~~l~~vda~~~---Fl~---~L~gv~DPE~KRkiIG~~Fi~vf~----~~a~~~- 321 (520)
|....+. .-.+.. +.++.....+|-... |.. ..-|... ..-.-|++=-++-. ..+...
T Consensus 85 ---~P~~ss~~s~~~a~~~a-~~~g~~~~~~~~~~i~~~~~~~~~~~~g~~~---~d~~~gNlqAR~Rm~~~~~la~l~n 157 (294)
T PTZ00323 85 ---QPICSSAWALARGRENI-AACGATEVVVDQTELHKQLSTLVETAVGIDG---GDFARGQLRSYMRTPVGYYVAQLLS 157 (294)
T ss_pred ---CCCCCCHHHHHHHHHHH-HHCCCCEEECCCHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---78545766598799999-9768852323607779999999998608861---0467889999998889999999860
Q ss_pred -CCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEE-CCCCH--HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
Q ss_conf -997099864622024542024677763034430-23201--13203202237898738999999998199988942688
Q gi|254780414|r 322 -GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHH-NVGGL--PEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHP 397 (520)
Q Consensus 322 -~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHH-Nvggl--p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhP 397 (520)
.+..+|.-|| + . ||-+ -||-- --+|. -=+-||++|+|-+||+|++.||+|++++.|-|
T Consensus 158 ~~g~~~LVlgT---------g---N-----kSE~~~vGY~TkYGD~a-gd~apI~DL~Kt~V~~Lar~LgiPe~ii~K~P 219 (294)
T PTZ00323 158 QEGTPAIVMGT---------G---N-----MDEDGYLGYFCKAGDGV-VDVQLISDLHKSEVFLVAEELGVPENTLQAAP 219 (294)
T ss_pred HCCCCEEEECC---------C---C-----CCCCHHCEEEEEECCCC-CCCHHHCCCCHHHHHHHHHHCCCCHHHHCCCC
T ss_conf 04887078628---------9---7-----55421200442034775-47033046839999999998099899930898
Q ss_pred CCC
Q ss_conf 898
Q gi|254780414|r 398 CPG 400 (520)
Q Consensus 398 FPG 400 (520)
=.+
T Consensus 220 SAe 222 (294)
T PTZ00323 220 SAD 222 (294)
T ss_pred CCC
T ss_conf 976
No 94
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=99.38 E-value=2.8e-11 Score=100.89 Aligned_cols=174 Identities=20% Similarity=0.301 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHCC-----CCEEEEEECCCC-CCCCCHHHHHHHHHHC
Q ss_conf 06789999999976504---44036640564047799999986223-----656999973895-5156278999988623
Q gi|254780414|r 205 MSSYHKEIVSRIKEQVG---NERVICAVSGGVDSTVAAFLIYEAIG-----INLTCVLVDHGF-MRKNEVENIISLFKGY 275 (520)
Q Consensus 205 ~~~~~~~~i~~Ir~~vg---~~kVi~~lSGGVDStV~A~Ll~kAig-----~~l~~vfVD~Gl-lRknE~~~v~~~~~~~ 275 (520)
.+..++..+.-||+.+. -++|++|+|||+|||++++|..+|+| .++.++...-+- .+.. .+...+..+.
T Consensus 5 ~~~~~~~~v~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~-~~da~~~~~~- 82 (268)
T COG0171 5 LEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQAD-EEDAQDLAEA- 82 (268)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCC-HHHHHHHHHH-
T ss_conf 99999999999999999739998699766681999999999998565651243266867887765347-9999999998-
Q ss_pred CCCCEEEEEHHHHHH---HHHCCCC-CHHHHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCCHHHHHHC-CCCCC
Q ss_conf 698579975889999---9966898-88999988756589999----999974399709986462202454202-46777
Q gi|254780414|r 276 PNFPLRVVDASERFI---RKLKNIV-DPETKRKVIGQLFIEVF----EEEAKKIGGAQFLGQGTLYPDVIESIS-FFGGP 346 (520)
Q Consensus 276 ~~~~l~~vda~~~Fl---~~L~gv~-DPE~KRkiIG~~Fi~vf----~~~a~~~~~~~~L~QGTlypDvIES~~-~~~~~ 346 (520)
+++....++=++.+- .++.... .++..+-..||.=-+.- -..|++ ..+|.-|| .+..|-.- ...
T Consensus 83 lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~---~~~lVlGT--gn~sE~~~Gy~T-- 155 (268)
T COG0171 83 LGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANK---LGGLVLGT--GNKSELALGYFT-- 155 (268)
T ss_pred HCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCEEECC--CCHHHHHCCCEE--
T ss_conf 29966997528889998876666523442112777645099999999999855---59789758--848778607443--
Q ss_pred CCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
Q ss_conf 630344302320113203202237898738999999998199988942688898
Q gi|254780414|r 347 SSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 347 ~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPG 400 (520)
| .- ++ .-=+.|+.+|||-+|++|++.||+|++++.|-|=|+
T Consensus 156 ----k--yG------Dg-~~d~~Pi~~L~KtqV~~La~~l~ipe~I~~k~PTAe 196 (268)
T COG0171 156 ----K--YG------DG-AVDINPIADLYKTQVYALARHLGIPEEILKKPPTAD 196 (268)
T ss_pred ----C--CC------CC-CCCHHHHCCCCHHHHHHHHHHCCCCHHHHCCCCCCC
T ss_conf ----2--06------76-447054148758999999987399999963999911
No 95
>PRK06186 hypothetical protein; Validated
Probab=99.38 E-value=7.9e-13 Score=111.92 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=86.9
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEE---ECCCCCCC---------------
Q ss_conf 239979999853889999999753768980899889977899998997096999---86986610---------------
Q gi|254780414|r 48 EQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK---NSQSREFG--------------- 109 (520)
Q Consensus 48 ~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~---~~~~~EyG--------------- 109 (520)
..+++||++-||-..---++.....+..-+.++|.||||+|||++...|-=.|- .+...|+-
T Consensus 51 L~~~dgilv~pGfG~RG~eGki~Ai~yARen~iP~LGICLGmQ~avIEfARnvlgl~dAnS~Efd~~~~~pvi~~l~~~~ 130 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNEDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAEHAETDPEASRPVIAPLSCSL 130 (229)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCH
T ss_conf 22599899899877765638999999998769987864277899999999986599888764557899971893688732
Q ss_pred ---EEEEEECCCCCCCCCCCCCCCCEEEEEE--CCCHH-----HCC-CCCCCEEECCCCCCEEEEEECCCCEE-EEEEEE
Q ss_conf ---3667523886222787266553368600--22011-----012-44421123239831788986350011-246521
Q gi|254780414|r 110 ---RAFIEIKKNCSLLKGMWEKGSKQQVWMS--HGDQV-----EHI-PEGFEVIASSDSTPFAFIADEKRKYY-AVQFHP 177 (520)
Q Consensus 110 ---~~~I~i~~~~~lf~gl~~~~~~~~VwmS--H~D~V-----~~l-P~gf~viA~S~~~~iaai~~~~~~iy-GVQFHP 177 (520)
..++.+.+++.+. .+.. +..+..- |.+.| ..+ -.|+.+.+.++++.+++++.++.|+| |+||||
T Consensus 131 ~~~~~~~~l~~~s~~~-~iYg---~~~i~ERHRHRYEvN~~y~~~le~~Gl~~sG~~~~~~veiiEl~~Hpffvg~QfHP 206 (229)
T PRK06186 131 VEATAAIRLRPGSLIA-RAYG---TDEIEEGYHCRYGVNPEFAAALESGALRVSGWDEEGDVRAVELPGHPFFVATLFQP 206 (229)
T ss_pred HCCCCCEEECCCCHHH-HHHC---CCHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCEEEECCCC
T ss_conf 0387515748998399-9869---65301332345546989999999789899998899988999928998589965875
Q ss_pred HHHCCCH-HHHHHHHHHHHHC
Q ss_conf 2221520-2577998755010
Q gi|254780414|r 178 EVVHTVG-GSQLIDNFVHHVA 197 (520)
Q Consensus 178 EV~hT~~-G~~iL~NFl~~Ic 197 (520)
|-+..+. -.-++..|+ .-|
T Consensus 207 Ef~Srp~~phPlF~~Fi-~AA 226 (229)
T PRK06186 207 ERAALAGRLPPLVRAFL-RAC 226 (229)
T ss_pred CCCCCCCCCCCCHHHHH-HHH
T ss_conf 45689999881599999-998
No 96
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.37 E-value=6e-13 Score=112.78 Aligned_cols=141 Identities=22% Similarity=0.313 Sum_probs=83.5
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEE---ECCCCC------------------
Q ss_conf 39979999853889999999753768980899889977899998997096999---869866------------------
Q gi|254780414|r 49 QNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK---NSQSRE------------------ 107 (520)
Q Consensus 49 ~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~---~~~~~E------------------ 107 (520)
.+.+||++.||-..---++.....+...+.++|.||||+|||+++..|-=.|- .+...|
T Consensus 54 ~~~dgilvpgGFG~rG~eGki~Ai~yARen~iPfLGIClGmQ~aviE~ARnvlg~~~A~s~E~~~~~~~~vi~~~~~~~~ 133 (235)
T cd01746 54 KGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKG 133 (235)
T ss_pred HCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHCC
T ss_conf 30697895788887764588999999997399725441034322689998752997767422479999877996756616
Q ss_pred ---------CCEEEEEECCCCCCCCCCCCCCCCEEEEE--ECCCHH-----HCCC-CCCCEEECCCC-CCEEEEEECCCC
Q ss_conf ---------10366752388622278726655336860--022011-----0124-44211232398-317889863500
Q gi|254780414|r 108 ---------FGRAFIEIKKNCSLLKGMWEKGSKQQVWM--SHGDQV-----EHIP-EGFEVIASSDS-TPFAFIADEKRK 169 (520)
Q Consensus 108 ---------yG~~~I~i~~~~~lf~gl~~~~~~~~Vwm--SH~D~V-----~~lP-~gf~viA~S~~-~~iaai~~~~~~ 169 (520)
-|...+.+.+++.+.+ +.. ...+.- -|.+.| ..+- .|+.+.+.+++ ..+++++.++.|
T Consensus 134 ~~~~GgTmRLG~~~~~l~~~s~~~~-~y~---~~~i~ERHRHRYevN~~y~~~le~~Gl~~sG~~~~~~~veiiEl~~Hp 209 (235)
T cd01746 134 VKDLGGTMRLGAYPVILKPGTLAHK-YYG---KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHP 209 (235)
T ss_pred CHHCCCCEEEEEEEEEECCCHHHHH-HCC---CCEEEEEECCCEEECHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 4001341342025776224306667-518---832312302355678999999986896899998999979999868998
Q ss_pred EE-EEEEEEHHHCCCH-HHHHHHHHH
Q ss_conf 11-2465212221520-257799875
Q gi|254780414|r 170 YY-AVQFHPEVVHTVG-GSQLIDNFV 193 (520)
Q Consensus 170 iy-GVQFHPEV~hT~~-G~~iL~NFl 193 (520)
+| |+|||||-+.++. -.-++..|+
T Consensus 210 ffvg~QfHPEf~Srp~~phPlF~~fi 235 (235)
T cd01746 210 FFVGTQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred CEEEECCCCCCCCCCCCCCCCHHHHC
T ss_conf 47887577644689999993836439
No 97
>KOG0623 consensus
Probab=99.33 E-value=1.2e-11 Score=103.48 Aligned_cols=172 Identities=22% Similarity=0.378 Sum_probs=110.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCC------CCCCCCCCCCCHHHHHCCCC
Q ss_conf 869999889705788998888659406985289898899723997999985388------99999997537689808998
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPA------SSLDIDSPQIPKEILESNIP 81 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~------SV~d~~ap~~~~~I~~~~iP 81 (520)
+-+-+||+|+-.-|.|...+|.||.....+ .++-+ | .+.+-+|+.|=-+ +.+..+-.....+..+.+.|
T Consensus 2 ~vv~~ld~~agn~~si~nal~hlg~~i~~v--~~P~D-I--~~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkP 76 (541)
T KOG0623 2 SVVTLLDYGAGNVRSIRNALRHLGFSIKDV--QTPGD-I--LNADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKP 76 (541)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEC--CCCHH-H--CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 657998417864788999998638365542--58122-0--367437603866412788887643247899999866997
Q ss_pred EEEECHHHHHHHHHCCCEEEECC--------------------CCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCH
Q ss_conf 89977899998997096999869--------------------8661036675238862227872665533686002201
Q gi|254780414|r 82 LLGICYGQQIMCQSLGGKTKNSQ--------------------SREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQ 141 (520)
Q Consensus 82 ILGICyG~QlLa~~~GG~V~~~~--------------------~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~ 141 (520)
++|||.|.|+| |-|+|+..+ ..+.||....+.+.+.+|... ..-.++.-|++-
T Consensus 77 fmgicvGlQaL---F~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWNsc~v~sd~effg~~----p~~~~YFVHSyl 149 (541)
T KOG0623 77 FMGICVGLQAL---FDGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWNSCQVGSDSEFFGDV----PNRHVYFVHSYL 149 (541)
T ss_pred EEEEHHHHHHH---HCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCEEEEEEEEC
T ss_conf 47631457998---63644378867643544401103577785774563115457752002567----873499985311
Q ss_pred HHCCC-----CCCCEEECCCC---CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHH
Q ss_conf 10124-----44211232398---31788986350011246521222152025779987550
Q gi|254780414|r 142 VEHIP-----EGFEVIASSDS---TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHH 195 (520)
Q Consensus 142 V~~lP-----~gf~viA~S~~---~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~ 195 (520)
..+.| ++|+ +|.+.. ..+++|. +.+++++|||||- ..+.|...|+|||.+
T Consensus 150 ~~ek~~~len~~wk-iat~kYG~E~Fi~ai~--knN~~AtQFHPEK-SG~aGL~vl~~FL~~ 207 (541)
T KOG0623 150 NREKPKSLENKDWK-IATCKYGSESFISAIR--KNNVHATQFHPEK-SGEAGLSVLRRFLHQ 207 (541)
T ss_pred CCCCCCCCCCCCCE-EEEECCCCHHHHHHHH--CCCEEEEECCCCC-CCCHHHHHHHHHHHC
T ss_conf 33345678987736-7640467088999986--0765457526544-550118999999851
No 98
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=99.33 E-value=3.6e-12 Score=107.24 Aligned_cols=140 Identities=26% Similarity=0.386 Sum_probs=88.8
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEEE---CCCCCC------------------
Q ss_conf 99799998538899999997537689808998899778999989970969998---698661------------------
Q gi|254780414|r 50 NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKN---SQSREF------------------ 108 (520)
Q Consensus 50 ~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~~---~~~~Ey------------------ 108 (520)
..|||+.-||=..==-++....-+...+.+||.||||+|||+..--|-=+|.. ++.-||
T Consensus 373 ~~DGILVPGGFG~RG~EGKI~Ai~yAREN~iPFLGICLGmQ~A~IEFARNV~Gl~~AnStEf~~~t~~p~~~Vv~LlpEq 452 (571)
T TIGR00337 373 EVDGILVPGGFGERGVEGKIRAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPKSPVVDLLPEQ 452 (571)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCC
T ss_conf 06806836888976602478999998763697330217778889999765347988874124645577733111425322
Q ss_pred ----------------------CEEEEEECCC---CCCCCCCCCCCCCEEEEEE--CCCHH-----HCCC-CCCCEEECC
Q ss_conf ----------------------0366752388---6222787266553368600--22011-----0124-442112323
Q gi|254780414|r 109 ----------------------GRAFIEIKKN---CSLLKGMWEKGSKQQVWMS--HGDQV-----EHIP-EGFEVIASS 155 (520)
Q Consensus 109 ----------------------G~~~I~i~~~---~~lf~gl~~~~~~~~VwmS--H~D~V-----~~lP-~gf~viA~S 155 (520)
|..++.+.++ +.+++ +. ....|.-- |-+.| ..+- .||.+.+.|
T Consensus 453 ~d~~~~~~VRt~~~~lGGTMRLG~ypc~l~~~~eWt~a~k-lY---g~~~v~ERHRHRYE~Nn~~~~~~E~~GL~vsG~S 528 (571)
T TIGR00337 453 KDQNGNKEVRTEIEDLGGTMRLGLYPCILKPGSEWTLAFK-LY---GKEEVYERHRHRYEVNNEYREELENKGLIVSGTS 528 (571)
T ss_pred CCCCCCEECCEEECCCCCEEECCCCCEEECCCCCHHHHHH-HC---CCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 2446760013010138724305872217717872326755-33---7867887124441227578989985795899986
Q ss_pred CC-CCEEEEEECCCCEE-EEEEEEHHHCCCH-HHHHHHHHH
Q ss_conf 98-31788986350011-2465212221520-257799875
Q gi|254780414|r 156 DS-TPFAFIADEKRKYY-AVQFHPEVVHTVG-GSQLIDNFV 193 (520)
Q Consensus 156 ~~-~~iaai~~~~~~iy-GVQFHPEV~hT~~-G~~iL~NFl 193 (520)
++ --++.|+-++.|+| |.|||||-+..++ +..+|.-|+
T Consensus 529 ~dg~l~EiiE~~~HP~FvA~QFHPEF~Srp~~p~plF~Gfv 569 (571)
T TIGR00337 529 PDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFV 569 (571)
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHH
T ss_conf 99838999984797868886226751167788887505532
No 99
>KOG2805 consensus
Probab=99.32 E-value=1.7e-11 Score=102.40 Aligned_cols=164 Identities=28% Similarity=0.377 Sum_probs=106.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCC---------CCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-
Q ss_conf 4403664056404779999998622365699997389---------551562789999886236985799758899999-
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHG---------FMRKNEVENIISLFKGYPNFPLRVVDASERFIR- 291 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~G---------llRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~- 291 (520)
-++|++|+||||||+|+|.||+++ |-+.+++|.-|= --+...-+.+...-+ +++++++.|+..+.+.+
T Consensus 5 ~~~VvvamSgGVDSsVaa~Ll~~~-g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~-~LnI~~~~Vnf~kEYW~~ 82 (377)
T KOG2805 5 PDRVVVAMSGGVDSSVAARLLAAR-GYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCK-QLNIPLHQVNFVKEYWND 82 (377)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCEEEEEEEHHHHHHH
T ss_conf 654899953771189999999741-887169966220122235668981120899999998-709702787437999999
Q ss_pred ----H----HCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCC--C
Q ss_conf ----9----66898-8899998875658999--99999743997099864622024542024677763034430232--0
Q gi|254780414|r 292 ----K----LKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVG--G 358 (520)
Q Consensus 292 ----~----L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvg--g 358 (520)
- -.|-| .|. |-.+.+|+. |-+.|.+--+.+|||-|.-.--+.|-.. .+.++.--|.+-+- .
T Consensus 83 Vfs~~L~~Y~~G~TPNPD----I~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~--~~~~~l~~~~d~~KDQt 156 (377)
T KOG2805 83 VFSPFLEEYENGRTPNPD----ILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED--NAESHLLISKDMVKDQT 156 (377)
T ss_pred HHHHHHHHHHCCCCCCCC----CCCCCEEECCHHHHHHHHHCCCCEEEEEEEEEEECCCCC--CCCEEEEECCCCCCCCE
T ss_conf 999998887658999997----134451421178999987558873774212144037556--76235761256667732
Q ss_pred --H--HHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
Q ss_conf --1--132032-022378987389999999981999889426
Q gi|254780414|r 359 --L--PEHMDM-KLVEPLKELFKDEVRLLGKELRLPDSFVER 395 (520)
Q Consensus 359 --l--p~~~~~-~liEPl~~l~KdEVR~lg~~Lglp~~~~~R 395 (520)
| ...-++ +++-||-.|-|+|||+|+++.|+| +..+
T Consensus 157 ~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~--~aeK 196 (377)
T KOG2805 157 YFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFP--NAEK 196 (377)
T ss_pred EEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCC--CCCC
T ss_conf 676303699998620667656779999999865986--4568
No 100
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.29 E-value=4.6e-12 Score=106.41 Aligned_cols=144 Identities=22% Similarity=0.333 Sum_probs=87.8
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEE---ECCCCCCCE---------------
Q ss_conf 39979999853889999999753768980899889977899998997096999---869866103---------------
Q gi|254780414|r 49 QNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK---NSQSREFGR--------------- 110 (520)
Q Consensus 49 ~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~---~~~~~EyG~--------------- 110 (520)
.+.+||++.||-.+=--++.....+..-+.+||.||||+|||++...|-=.|. .+...||..
T Consensus 342 ~~~dGIlVPGGFG~RGiEGKI~Ai~yARen~IPfLGICLGMQ~avIEfARNVlgl~dAnStEfd~~t~~pVI~lm~eq~~ 421 (534)
T PRK05380 342 KDVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKD 421 (534)
T ss_pred HCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECHHHCC
T ss_conf 31882995787665431568999999998199811011223788999999845899973253589999986998823137
Q ss_pred ------------EEEEECCCCCCCCCCCCCCCCEEEEEE--CCCHH-----HCC-CCCCCEEECCCC-CCEEEEEECCCC
Q ss_conf ------------667523886222787266553368600--22011-----012-444211232398-317889863500
Q gi|254780414|r 111 ------------AFIEIKKNCSLLKGMWEKGSKQQVWMS--HGDQV-----EHI-PEGFEVIASSDS-TPFAFIADEKRK 169 (520)
Q Consensus 111 ------------~~I~i~~~~~lf~gl~~~~~~~~VwmS--H~D~V-----~~l-P~gf~viA~S~~-~~iaai~~~~~~ 169 (520)
....+.+++..+ .+.. ....+.-- |.+.| ..+ -.|+.+.+.|.+ .-++.++.++.|
T Consensus 422 ~~~~GGTMRLG~y~~~l~~gS~a~-~~Yg--~~~~I~ERHRHRYEvN~~y~~~le~~Gl~~sG~s~d~~lvEiiEl~~Hp 498 (534)
T PRK05380 422 VSDLGGTMRLGAYPCKLKPGTLAA-EIYG--KTEVIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIIELPDHP 498 (534)
T ss_pred CCCCCCEEECCCEEEEECCCCHHH-HHHC--CCCEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCC
T ss_conf 765666045164456756888999-9858--9981666456420018999999997897999998999878999868998
Q ss_pred EE-EEEEEEHHHCCCH-HHHHHHHHHHH
Q ss_conf 11-2465212221520-25779987550
Q gi|254780414|r 170 YY-AVQFHPEVVHTVG-GSQLIDNFVHH 195 (520)
Q Consensus 170 iy-GVQFHPEV~hT~~-G~~iL~NFl~~ 195 (520)
+| |+|||||-...+. ..-++..|+..
T Consensus 499 fFvg~QfHPEfkSrP~~PhPlF~~fI~A 526 (534)
T PRK05380 499 WFVGVQFHPEFKSRPRRPHPLFAGFVKA 526 (534)
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 0899657766578999998369999999
No 101
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=99.27 E-value=1.7e-11 Score=102.38 Aligned_cols=153 Identities=22% Similarity=0.349 Sum_probs=102.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC----HHHHHHHHHH-CCCCCEEEEEHHHHHHHHHCCCCC
Q ss_conf 03664056404779999998622365699997389551562----7899998862-369857997588999999668988
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE----VENIISLFKG-YPNFPLRVVDASERFIRKLKNIVD 298 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE----~~~v~~~~~~-~~~~~l~~vda~~~Fl~~L~gv~D 298 (520)
||++++||||||+|||.|+.|. |-++++++.+++..-..+ ..++.+.+.. .++.++..+..-...+..+.+-..
T Consensus 1 kvl~L~SGGiDS~VAa~ll~kr-G~~V~~l~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR-GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFFVQKEIYGYGK 79 (177)
T ss_pred CEEEEECCCCHHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 9899957781699999999987-998999999899988889999999999999994899628999453899999997088
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 89999887565-89999999974399709986462202454202467776303443023201132032022378987389
Q gi|254780414|r 299 PETKRKVIGQL-FIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKD 377 (520)
Q Consensus 299 PE~KRkiIG~~-Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~Kd 377 (520)
+.-+-+.-+- +.+..++.|+++ ++++++-| ||-+.. .|.|.+ |-...-....+.++-||-.+-|+
T Consensus 80 -~~npcv~ckr~m~r~a~~~A~~~-ga~~IvTG-------e~lGQv--asqt~~---nl~~i~~~~~~~ilRPL~~~dK~ 145 (177)
T cd01712 80 -EKYRCILCKRMMYRIAEKLAEEL-GADAIVTG-------ESLGQV--ASQTLE---NLLVISSGTDLPILRPLIGFDKE 145 (177)
T ss_pred -CCCCCEEHHHHHHHHHHHHHHHC-CCCEEEEC-------CCHHHH--HHHHHH---HHHHHHHHHCCCCCCCCCCCCHH
T ss_conf -88986362999999999999986-99899866-------522204--476899---99999874256421488899989
Q ss_pred HHHHHHHHHCCCHH
Q ss_conf 99999998199988
Q gi|254780414|r 378 EVRLLGKELRLPDS 391 (520)
Q Consensus 378 EVR~lg~~Lglp~~ 391 (520)
|+|++++++|+-+-
T Consensus 146 EI~~~A~~igt~~~ 159 (177)
T cd01712 146 EIIGIARRIGTYDI 159 (177)
T ss_pred HHHHHHHHHCCHHH
T ss_conf 99999998096744
No 102
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.26 E-value=1.4e-11 Score=102.99 Aligned_cols=141 Identities=22% Similarity=0.333 Sum_probs=86.1
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEE---ECCCCCCCE-----------------
Q ss_conf 979999853889999999753768980899889977899998997096999---869866103-----------------
Q gi|254780414|r 51 PQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK---NSQSREFGR----------------- 110 (520)
Q Consensus 51 p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~---~~~~~EyG~----------------- 110 (520)
.+||++.||-..=--++.....+...+.++|.||||+|||+....|--+|. .+...|+..
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~ 423 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVV 423 (533)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 88799689877675588999999998669986888566789999999985197657643548899986588335423677
Q ss_pred ----------EEEEECCCCCCCCCCCCCCCCEEEEEE--CCCHH-----HCCC-CCCCEEECCCC-CCEEEEEECCCCEE
Q ss_conf ----------667523886222787266553368600--22011-----0124-44211232398-31788986350011
Q gi|254780414|r 111 ----------AFIEIKKNCSLLKGMWEKGSKQQVWMS--HGDQV-----EHIP-EGFEVIASSDS-TPFAFIADEKRKYY 171 (520)
Q Consensus 111 ----------~~I~i~~~~~lf~gl~~~~~~~~VwmS--H~D~V-----~~lP-~gf~viA~S~~-~~iaai~~~~~~iy 171 (520)
....+..++ +...+.. ...|+-- |.+.| ..+- .|+++.+.|.+ ..+++++..+.|+|
T Consensus 424 ~lGGTmRLG~y~~~l~~gT-~a~~lY~---~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfF 499 (533)
T COG0504 424 DLGGTMRLGAYPCRLKPGT-LAAKLYG---KDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFF 499 (533)
T ss_pred CCCCEEECCCEEEECCCCC-HHHHHHC---CCCEEEECCCHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCEE
T ss_conf 6775004166101127886-8998738---77140021531330889999998689699998689986899983899648
Q ss_pred -EEEEEEHHHCCCH-HHHHHHHHHHH
Q ss_conf -2465212221520-25779987550
Q gi|254780414|r 172 -AVQFHPEVVHTVG-GSQLIDNFVHH 195 (520)
Q Consensus 172 -GVQFHPEV~hT~~-G~~iL~NFl~~ 195 (520)
|+|||||-+..+. ..-++..|+.-
T Consensus 500 v~~QfHPEf~SrP~~phPlf~~fv~A 525 (533)
T COG0504 500 VATQFHPEFKSRPLRPHPLFVGFVKA 525 (533)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98746631347899998347999999
No 103
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=99.25 E-value=1.9e-09 Score=87.80 Aligned_cols=224 Identities=24% Similarity=0.295 Sum_probs=152.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 99999976504440366405640477999999862236569999738-95515627899998862369857997588999
Q gi|254780414|r 211 EIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDH-GFMRKNEVENIISLFKGYPNFPLRVVDASERF 289 (520)
Q Consensus 211 ~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~-GllRknE~~~v~~~~~~~~~~~l~~vda~~~F 289 (520)
..-..++++..+++||.|.|||||||.+|+++....|-+..||+|-+ -+.-.-|-++-...=+. +|++...|.--..-
T Consensus 4 ~L~~fl~~kf~nk~~~IAySGGvDS~lla~v~~~v~g~~~lait~~sP~~sp~~el~~A~~~A~~-~g~~he~~~~d~~~ 82 (263)
T TIGR00268 4 NLRNFLKEKFKNKKVLIAYSGGVDSSLLAAVCSDVAGTEVLAITVVSPSISPRRELEDAKAIAKE-IGVKHELVKIDKMA 82 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEECCCCCC
T ss_conf 88889876764081699951746589999999875310113578762775735448999999988-08301211001236
Q ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHH
Q ss_conf 99966898-88999988756589999999974399709986462202454202467776303443023201132032022
Q gi|254780414|r 290 IRKLKNIV-DPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLV 368 (520)
Q Consensus 290 l~~L~gv~-DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~li 368 (520)
-. .-+ ++|+.==--=+.|.+...++|.+. +.++...||=|.|+-+.-. | +--.-.+...
T Consensus 83 n~---~f~~N~~~RCY~CK~~~~~~L~~~a~~~-gy~~V~dGtN~dDL~~~RP--G--------------~~A~~E~~g~ 142 (263)
T TIGR00268 83 NP---NFRANVEERCYFCKKKVLSILVKLAEKR-GYDVVVDGTNADDLEDHRP--G--------------LRAVKELNGV 142 (263)
T ss_pred CC---CCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCC--H--------------HHHHHHCCCC
T ss_conf 85---0016885444154888999989999863-9957982346200023675--1--------------3567660788
Q ss_pred -HHHHHH--HHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf -378987--3899999999819998894268889831112210--00367899999999999999998646533322010
Q gi|254780414|r 369 -EPLKEL--FKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCI--GEITEERINILRESDAIYREEIHKAGIYRKIWQAF 443 (520)
Q Consensus 369 -EPl~~l--~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~--g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~q~~ 443 (520)
=|+.+| -|.|||++++.||+|= |--|= -|=|+-|+. -||+.|+|..+-+|..+|++.
T Consensus 143 ~SP~aef~I~K~eir~ia~~lg~~~---~DKP~-~~CL~sR~p~g~EI~~ekL~~v~eaE~~~l~~-------------- 204 (263)
T TIGR00268 143 YSPWAEFGITKKEIREIAKSLGLSF---YDKPS-EACLASRFPFGEEIDVEKLKKVDEAEEIVLRR-------------- 204 (263)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCC---CCCCC-CCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH--------------
T ss_conf 6872002568799999999748898---88866-21021047687510489877699999999998--------------
Q ss_pred EEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 455686324215998541447999632168775587101898999987557
Q gi|254780414|r 444 TVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIR 494 (520)
Q Consensus 444 avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta~~~~~~~~~l~~is~~ 494 (520)
+-.+.|=| |.|..+.++ ++|-|-|+++-+.
T Consensus 205 ---~g~~qvRV----R~y~nlAvi--------------E~~~~~l~kl~~~ 234 (263)
T TIGR00268 205 ---AGVKQVRV----RNYDNLAVI--------------EVAEDELSKLLNE 234 (263)
T ss_pred ---HCCCCEEE----ECCCCEEEE--------------EECHHHHHHHHHH
T ss_conf ---35660576----526765799--------------6285889999863
No 104
>pfam02568 ThiI Thiamine biosynthesis protein (ThiI). ThiI is required for thiazole synthesis, required for thiamine biosynthesis.
Probab=99.25 E-value=1.5e-10 Score=95.67 Aligned_cols=156 Identities=24% Similarity=0.306 Sum_probs=111.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH----HHHHC---CCCCEEEEEHHHHHHHHHC
Q ss_conf 4403664056404779999998622365699997389551562789999----88623---6985799758899999966
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIIS----LFKGY---PNFPLRVVDASERFIRKLK 294 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~----~~~~~---~~~~l~~vda~~~Fl~~L~ 294 (520)
.+||++++|||+||.|||.|+.|. |-++++++.+++...-.+..+... .+++. ..+++++||..+....-..
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lmmkR-G~~V~~vhf~~~p~~~~~~~~k~~~l~~~l~~y~~~~~~~l~vv~~~~~~~~i~~ 81 (197)
T pfam02568 3 QGKVLALLSGGIDSPVAAYLMMRR-GCRVVALHFINEPGTSEEAIEKVRKLAELLAEYGTSCEGKLVVVDFTKVQKEIIE 81 (197)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 771898866871299999999987-9979999987999998999999999999999737887544999574999999996
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHH
Q ss_conf 89888999988756589-99999997439970998646220245420246777630344302320113203202237898
Q gi|254780414|r 295 NIVDPETKRKVIGQLFI-EVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKE 373 (520)
Q Consensus 295 gv~DPE~KRkiIG~~Fi-~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~ 373 (520)
...+.. |-++-+.|+ +..++.|++. +++++.-| ||-+... |.|+. |....-....+-++.||--
T Consensus 82 ~~~~~~--~cv~cKr~M~r~A~~iA~~~-ga~~IVTG-------EsLGQVa--SQTl~---nl~~i~~~~~~pilRPLig 146 (197)
T pfam02568 82 KAPEKY--RCVLCKRCMYRAAEKVAEEE-GADALVTG-------ESLGQVA--SQTLD---NLRVISAATNLPILRPLIG 146 (197)
T ss_pred CCCCCC--EEHHHHHHHHHHHHHHHHHC-CCCEEEEC-------CCHHHHH--HCCCC---HHHHHHHHHCCCCCCCCCC
T ss_conf 289876--54569999999999999984-99899847-------3031210--04531---0699987624853134346
Q ss_pred HHHHHHHHHHHHHCCCHHHH
Q ss_conf 73899999999819998894
Q gi|254780414|r 374 LFKDEVRLLGKELRLPDSFV 393 (520)
Q Consensus 374 l~KdEVR~lg~~Lglp~~~~ 393 (520)
+=|+|++++++++|.=+--+
T Consensus 147 ~DK~EIi~~Ar~IGt~~~s~ 166 (197)
T pfam02568 147 LDKEEIINLAKEIGTYEISI 166 (197)
T ss_pred CCHHHHHHHHHHHCCHHHHC
T ss_conf 99999999999948677662
No 105
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=5e-10 Score=91.86 Aligned_cols=158 Identities=25% Similarity=0.286 Sum_probs=113.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCC
Q ss_conf 440366405640477999999862236-569999738955156--27899998862369857997588999999668988
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKN--EVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD 298 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD~GllRkn--E~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~D 298 (520)
+++|+.|+|||.||++++.++++.-+. ++.+++||||+.-.. +.+.+ +.+.+.+++++++.+....+......-..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 99 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELV-EKLCEKLGIPLIVERVTDDLGRETLDGKS 99 (298)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH-HHHHHHCCCCEEEEEHHHHHHHCCCCCCC
T ss_conf 78589993787899999999998422573899997089886432899999-99999649984886204543100246767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC---CCCCCCEEEEEECCCCHHHHH---CC-CHHHHH
Q ss_conf 89999887565899999999743997099864622024542024---677763034430232011320---32-022378
Q gi|254780414|r 299 PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF---FGGPSSIIKSHHNVGGLPEHM---DM-KLVEPL 371 (520)
Q Consensus 299 PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~---~~~~~~~IKsHHNvgglp~~~---~~-~liEPl 371 (520)
|+.. -+..=-..|.+.|++. +++.++.|.--.|.+|..-- .|+.....+ +.|... .. .++.||
T Consensus 100 ~c~~---c~~~R~~~l~~~a~~~-g~~~i~tgH~~dD~~et~lm~l~~g~~~~~l~------~~~~~~~~~~~~~~iRPL 169 (298)
T COG0037 100 ICAA---CRRLRRGLLYKIAKEL-GADKIATGHHLDDQAETFLMNLLRGSGLRGLR------GMPPKRPFEGGLLIIRPL 169 (298)
T ss_pred HHHH---HHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHCCCCHHHHH------CCCCCCCCCCCCEEECCC
T ss_conf 8799---9999999999999985-99989856784689999999986175224564------088524457886454757
Q ss_pred HHHHHHHHHHHHHHHCCCH
Q ss_conf 9873899999999819998
Q gi|254780414|r 372 KELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 372 ~~l~KdEVR~lg~~Lglp~ 390 (520)
....+.|++......|||-
T Consensus 170 ~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 170 LYVREKEIELYAKEKGLPY 188 (298)
T ss_pred CCCCHHHHHHHHHHCCCCE
T ss_conf 4688999999999759987
No 106
>pfam01171 ATP_bind_3 PP-loop family. This family of proteins belongs to the PP-loop superfamily.
Probab=99.21 E-value=2.3e-10 Score=94.25 Aligned_cols=152 Identities=30% Similarity=0.409 Sum_probs=102.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCCEEEEEECCCCC--CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCC
Q ss_conf 0366405640477999999862---236569999738955--15627899998862369857997588999999668988
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEA---IGINLTCVLVDHGFM--RKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD 298 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kA---ig~~l~~vfVD~Gll--RknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~D 298 (520)
||++|+|||+||++++.++++. .+-++++++||||+- ...|.+.|.+..+ .+|+++.+..-.. ....+..-
T Consensus 1 ki~vavSGG~DS~~Ll~~l~~~~~~~~~~~~~~hvnh~lr~~s~~~~~~v~~~~~-~~~i~~~i~~~~~---~~~~~~~~ 76 (182)
T pfam01171 1 KILVAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVDHGLREESDREAQFVKELCR-QLNIPLEVLRVDV---AKKSGLNL 76 (182)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEEEEC---CCCCCCCH
T ss_conf 9999967859999999999999997599789999879986540589999999999-8599759999734---76678777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC---CCCCCCEEEEEECCCCHHHHH---CCCHHHHHH
Q ss_conf 89999887565899999999743997099864622024542024---677763034430232011320---320223789
Q gi|254780414|r 299 PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF---FGGPSSIIKSHHNVGGLPEHM---DMKLVEPLK 372 (520)
Q Consensus 299 PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~---~~~~~~~IKsHHNvgglp~~~---~~~liEPl~ 372 (520)
.+.-|++ - .+.|.+.+++. ++.+++.|.-.-|.+|+--- .|+... +..|+|... ...++-||-
T Consensus 77 e~~aR~~-R---y~~l~~~a~~~-~~~~i~lgHh~DD~~ET~lm~l~rG~~~~------gl~gm~~~~~~~~~~iiRPLl 145 (182)
T pfam01171 77 EEAAREA-R---YDFFEEIAKKN-GAEVLLTAHHADDQAETFLMRLLRGSGLA------GLAGIAPVRPLAGGRIVRPLL 145 (182)
T ss_pred HHHHHHH-H---HHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCCEEECCCC
T ss_conf 5789999-9---99999989861-76648874342329999999997289811------033887513468943870211
Q ss_pred HHHHHHHHHHHHHHCCCH
Q ss_conf 873899999999819998
Q gi|254780414|r 373 ELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 373 ~l~KdEVR~lg~~Lglp~ 390 (520)
.+.|+|.++..+..+||-
T Consensus 146 ~~~k~ei~~~a~~~~l~~ 163 (182)
T pfam01171 146 KVTKSEIEEYLKEHGIPW 163 (182)
T ss_pred CCCHHHHHHHHHHCCCCE
T ss_conf 488999999999869936
No 107
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.16 E-value=3.8e-10 Score=92.71 Aligned_cols=155 Identities=23% Similarity=0.348 Sum_probs=97.8
Q ss_pred CEEEEECCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCCH--HHHHHHHHHCCCCCEEEEEHHHHHHHHHCCC
Q ss_conf 0366405640477999999862-----23656999973895515627--8999988623698579975889999996689
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEA-----IGINLTCVLVDHGFMRKNEV--ENIISLFKGYPNFPLRVVDASERFIRKLKNI 296 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kA-----ig~~l~~vfVD~GllRknE~--~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv 296 (520)
||++|+|||+||+|++.|+++- .+-++++++||||+ |.+.. ++..+.+...+++++..+...+.. ...
T Consensus 1 kilva~SGG~DS~~Ll~ll~~~~~~~~~~~~l~~~hvnh~~-r~~s~~~~~~v~~~~~~~~i~~~~~~~~~~~----~~~ 75 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGI-PGYRDESLEVVERLAEELGIELEIVSFKEEY----TDD 75 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEEEECC----CCC
T ss_conf 98999658499999999999988864889569999956998-8888999999999899629935998764036----763
Q ss_pred CCHHHHHH-H---H-HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC---CCCCCCEEEEEECCCCHHHH-H---C
Q ss_conf 88899998-8---7-565899999999743997099864622024542024---67776303443023201132-0---3
Q gi|254780414|r 297 VDPETKRK-V---I-GQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF---FGGPSSIIKSHHNVGGLPEH-M---D 364 (520)
Q Consensus 297 ~DPE~KRk-i---I-G~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~---~~~~~~~IKsHHNvgglp~~-~---~ 364 (520)
...++.+. - . ++.=-..|.+.+++. ++.+|+-|.=.-|.+|..-- .|+.....+ +.|.. . .
T Consensus 76 ~~~~~~~~~~~c~~c~r~Rr~~l~~~~~~~-~~~~i~~gHh~dD~~ET~l~~l~rg~~~~~~~------~~~~~~~~~~~ 148 (185)
T cd01993 76 IEVKKRGGKSPCSLCGVLRRGLLNKIAKEL-GADKLATGHNLDDEAETLLMNLLRGGILRLMR------PGPILYLDEGD 148 (185)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHCCCCHHHCC------CCCCCCCCCCC
T ss_conf 899998640634689999999999999981-99889753307689999999998489700056------76633356898
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 20223789873899999999819998
Q gi|254780414|r 365 MKLVEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 365 ~~liEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
.+++-||-++-|+|.++..++.+||-
T Consensus 149 i~iiRPLL~~~k~ei~~y~~~~~l~~ 174 (185)
T cd01993 149 VTRIRPLVYVREKEIVLYAELNGLPF 174 (185)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCE
T ss_conf 47995498898999999999879987
No 108
>PRK01175 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=99.15 E-value=1.5e-09 Score=88.54 Aligned_cols=189 Identities=20% Similarity=0.286 Sum_probs=116.7
Q ss_pred CCCEEEEEEC-CCCHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHCCCCEEEECCCCCC--CCCCCC-------CCCCH-
Q ss_conf 4886999988-970578899888865940698528989-88997239979999853889--999999-------75376-
Q gi|254780414|r 6 RSSKVLIIDF-GSQFTQLIARRVRESKVYCEVIAFKNA-LDYFKEQNPQAIILSGSPAS--SLDIDS-------PQIPK- 73 (520)
Q Consensus 6 ~~~~IlIlDf-GSQytqLIaRriRelgVyseI~P~~~~-~e~i~~~~p~GIILSGGP~S--V~d~~a-------p~~~~- 73 (520)
+++||+||-| ||.--.-.++.++..|.-++.+..+.. ...-...++++|++.||=+- +...++ |.+.+
T Consensus 2 ~~PkvaIl~fpGsNcd~e~~~Af~~aG~~~~~v~~~dl~~~~~~L~~~~~lv~pGGFSyGD~l~aG~~~a~~~~~~~~~~ 81 (255)
T PRK01175 2 ESPKVGVLRMEGTNNETEVFKSVRRSGGEPEYVHINDLAAGRKSVSDYDCLIIPGGFSAGDYIRAGAIFAARLKAVLGKD 81 (255)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99869999658648199999999985996389986523367666555548997377676433575188999867999999
Q ss_pred --HHHHCCCCEEEECHHHHHHHHH--CCC-----EEEECCCCCC--CEEEEEECCCCCC-CCCCCCCCCCEEEEEECCCH
Q ss_conf --8980899889977899998997--096-----9998698661--0366752388622-27872665533686002201
Q gi|254780414|r 74 --EILESNIPLLGICYGQQIMCQS--LGG-----KTKNSQSREF--GRAFIEIKKNCSL-LKGMWEKGSKQQVWMSHGDQ 141 (520)
Q Consensus 74 --~I~~~~iPILGICyG~QlLa~~--~GG-----~V~~~~~~Ey--G~~~I~i~~~~~l-f~gl~~~~~~~~VwmSH~D~ 141 (520)
+.++.+.||||||=|+|+|.+. +-| ...+.....| -+..+.+.+++++ ++++. .....+|.+|++.
T Consensus 82 i~~f~~~g~~vLGICNGfQiL~e~gLLPg~~~~~~L~~N~s~rF~~r~v~l~v~~~~~~f~~~~~--~~~l~ipvAHgEG 159 (255)
T PRK01175 82 IREFIDSGRPIIGICNGFQVLMELGLIPAERPEIALTNNESNRFECRYTYIKMTSEKCIFVKNLG--KGVFQVPVAHAEG 159 (255)
T ss_pred HHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCHHHHHCCC--CCEEEEEEECCCC
T ss_conf 99999679967998016899997587789998802024799987867879999448346664148--9779987553768
Q ss_pred H---------HCCCC-CCCEEEC------------CCCC---CEEEEEECCCCEEEEEEEEHHHC-------------CC
Q ss_conf 1---------01244-4211232------------3983---17889863500112465212221-------------52
Q gi|254780414|r 142 V---------EHIPE-GFEVIAS------------SDST---PFAFIADEKRKYYAVQFHPEVVH-------------TV 183 (520)
Q Consensus 142 V---------~~lP~-gf~viA~------------S~~~---~iaai~~~~~~iyGVQFHPEV~h-------------T~ 183 (520)
= .++-+ +-.++-. +.|+ .||+|.+++.+++|++=|||=.- ..
T Consensus 160 rf~~~~~~~l~~l~~n~qi~~rY~d~~G~~~~yp~NPNGS~~~IAGI~n~~GrvlgmMPHPER~~~~~q~~~~~~~~~~g 239 (255)
T PRK01175 160 RVAVSEDSVLKRLYENDQIVFRYVDENGVYDGYPWNPNGSIDNIAGITNETGNVIGLMPHPERIYYGYQAMYNERRKDYG 239 (255)
T ss_pred CEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55758989999998589658999669986457888998797672086789999988789963256465588786667778
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0257799875501
Q gi|254780414|r 184 GGSQLIDNFVHHV 196 (520)
Q Consensus 184 ~G~~iL~NFl~~I 196 (520)
.|..|++|.+--+
T Consensus 240 ~g~~~F~nav~~~ 252 (255)
T PRK01175 240 TGKIFFRSLVNYL 252 (255)
T ss_pred CHHHHHHHHHHHH
T ss_conf 6999999999999
No 109
>PRK03619 phosphoribosylformylglycinamidine synthase subunit I; Provisional
Probab=99.13 E-value=2.4e-09 Score=86.98 Aligned_cols=180 Identities=21% Similarity=0.325 Sum_probs=115.4
Q ss_pred EEEEEEC-CCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCC--CCCCCCC----CCCHH---HHHC
Q ss_conf 6999988-97057889988886594069852898988997239979999853889--9999997----53768---9808
Q gi|254780414|r 9 KVLIIDF-GSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPAS--SLDIDSP----QIPKE---ILES 78 (520)
Q Consensus 9 ~IlIlDf-GSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~S--V~d~~ap----~~~~~---I~~~ 78 (520)
||+||-| ||.=-.-.++.++..|..++.+-++. + ...+++++++.||=+- +...++. .+.++ ..+.
T Consensus 2 kvaIl~~pGsNcd~e~~~Af~~~G~~~~~v~~~d--~--~L~~~~~lv~pGGFSyGD~L~aGaia~~~~i~~~i~~f~~~ 77 (223)
T PRK03619 2 KIAVITFPGTNCDVDMAHAIRLAGAEPVYVWHTD--T--DLDGVDAVVLPGGFSYGDYLRCGAIAAFAPVMQAVVEAAEK 77 (223)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECC--C--CCCCCCEEEECCCCCCCCCCCCCHHHHHCHHHHHHHHHHHC
T ss_conf 6999971764949999999998699569998447--9--87645389983500565345533476527899999999867
Q ss_pred CCCEEEECHHHHHHHHH--CCCEEEECCCCCC--CEEEEEECC-CCCCCCCCCCCCCCEEEEEECCCH--------HHCC
Q ss_conf 99889977899998997--0969998698661--036675238-862227872665533686002201--------1012
Q gi|254780414|r 79 NIPLLGICYGQQIMCQS--LGGKTKNSQSREF--GRAFIEIKK-NCSLLKGMWEKGSKQQVWMSHGDQ--------VEHI 145 (520)
Q Consensus 79 ~iPILGICyG~QlLa~~--~GG~V~~~~~~Ey--G~~~I~i~~-~~~lf~gl~~~~~~~~VwmSH~D~--------V~~l 145 (520)
+.|+||||=|+|+|+.. +-|...+.....| -+..+++.+ +++.++++ +......+|.+|++. +.++
T Consensus 78 g~~vLGICNGfQiL~e~gLlPgaL~~N~s~rF~~r~v~lkv~~~~s~f~~~~-~~g~~l~ipVAHgEGr~~~~~~~l~~l 156 (223)
T PRK03619 78 GKPVLGICNGFQILLEAGLLPGALTRNENLKFICRDVKLRVENNDTAFTSRY-EKGEVIRIPIAHGEGNYYADEETLKEL 156 (223)
T ss_pred CCCEEEECHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHCCC-CCCCEEEEEEECCCCCEECCHHHHHHH
T ss_conf 9977998727898986477886210269998798656788658984010378-999889887244875335599999999
Q ss_pred CC-CCCEEECC----CCC---CEEEEEECCCCEEEEEEEEHHHC-----CCHHHHHHHHHH
Q ss_conf 44-42112323----983---17889863500112465212221-----520257799875
Q gi|254780414|r 146 PE-GFEVIASS----DST---PFAFIADEKRKYYAVQFHPEVVH-----TVGGSQLIDNFV 193 (520)
Q Consensus 146 P~-gf~viA~S----~~~---~iaai~~~~~~iyGVQFHPEV~h-----T~~G~~iL~NFl 193 (520)
-+ +-.++-+. .|+ .||+|.+++.+++|++=|||=.- +..|..|++|-+
T Consensus 157 ~~~~qi~~~Y~d~~NPNGS~~~IAGI~~~~GrvlgmMPHPERa~~~~~g~~dG~~~f~s~v 217 (223)
T PRK03619 157 EGNGQVVFRYVDETNPNGSVNDIAGICNENGNVLGLMPHPERAVEALLGSDDGLKLFKSAL 217 (223)
T ss_pred HHCCCEEEEECCCCCCCCCHHHHHEEECCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9789789998999999889646528587999998888996446355447861499999999
No 110
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.08 E-value=6.1e-10 Score=91.30 Aligned_cols=150 Identities=28% Similarity=0.391 Sum_probs=100.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCCC---CHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCC
Q ss_conf 03664056404779999998622---36569999738955156---2789999886236985799758899999966898
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAI---GINLTCVLVDHGFMRKN---EVENIISLFKGYPNFPLRVVDASERFIRKLKNIV 297 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAi---g~~l~~vfVD~GllRkn---E~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~ 297 (520)
||++|+|||+||.+++.++++.. +-++++++||||+ |.+ |.+.|.+..+ .+++++.+.+.... . +.-.
T Consensus 1 ki~vavSGG~DS~~Ll~~l~~~~~~~~~~l~a~hvdh~l-r~~s~~~~~~v~~~~~-~~~i~~~i~~~~~~---~-~~~~ 74 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGL-RPESDEEAAFVADLCA-KLGIPLYILVVALA---P-KPGG 74 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CCCCHHHHHHHHHHHH-HCCCCEEEEEEEEC---C-CCCC
T ss_conf 999996784999999999999999749948999981898-8888899999999999-85998899997753---6-7899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC---CCCCCCEEEEEECCCCHHHHH---CCCHHHHH
Q ss_conf 889999887565899999999743997099864622024542024---677763034430232011320---32022378
Q gi|254780414|r 298 DPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF---FGGPSSIIKSHHNVGGLPEHM---DMKLVEPL 371 (520)
Q Consensus 298 DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~---~~~~~~~IKsHHNvgglp~~~---~~~liEPl 371 (520)
..|+.-+..- .+.|.+.+++. +..+++-|.=.-|.+|+--- .|+... ...|+|... ..+++-||
T Consensus 75 ~~e~~aR~~R---y~~l~~~~~~~-~~~~i~lgHh~dD~~ET~lm~l~rg~~~~------gl~gm~~~~~~~~~~iiRPL 144 (185)
T cd01992 75 NLEAAAREAR---YDFFAEIAKEH-GADVLLTAHHADDQAETVLMRLLRGSGLR------GLAGMPARIPFGGGRLIRPL 144 (185)
T ss_pred CHHHHHHHHH---HHHHHHHHHHH-CCCCEEECCCHHHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCCEEEEHH
T ss_conf 9999999999---99999999873-54504203630368999999987189964------15277841357995287157
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 987389999999981999
Q gi|254780414|r 372 KELFKDEVRLLGKELRLP 389 (520)
Q Consensus 372 ~~l~KdEVR~lg~~Lglp 389 (520)
-.+.|+|.++..+..+||
T Consensus 145 L~~~k~ei~~~~~~~~i~ 162 (185)
T cd01992 145 LGITRAEIEAYLRENGLP 162 (185)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 785399999999984995
No 111
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.05 E-value=1.3e-08 Score=81.88 Aligned_cols=180 Identities=22% Similarity=0.318 Sum_probs=107.3
Q ss_pred EEEEEC-CCCHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHCCCCEEEECCCCCCCCC---C-----CCCCCCHHH---H
Q ss_conf 999988-97057889988886594069852898988-997239979999853889999---9-----997537689---8
Q gi|254780414|r 10 VLIIDF-GSQFTQLIARRVRESKVYCEVIAFKNALD-YFKEQNPQAIILSGSPASSLD---I-----DSPQIPKEI---L 76 (520)
Q Consensus 10 IlIlDf-GSQytqLIaRriRelgVyseI~P~~~~~e-~i~~~~p~GIILSGGP~SV~d---~-----~ap~~~~~I---~ 76 (520)
|+||-| ||.=-.-.++.++..|..++.+.++...+ .....+++++++.||=+ --| . .+|.+.+.+ .
T Consensus 1 VaVl~~pGsNcd~e~~~Af~~aG~~~~~V~~~dl~~~~~~L~~~~~lv~pGGFS-yGD~l~ag~~~a~s~~~~~~l~~f~ 79 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFS-YGDYLRAGAIAAASPLLMEEVKEFA 79 (238)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCC-CCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 989991884988999999998699269998101656646611075899868667-7666555678874811308999975
Q ss_pred HCCCCEEEECHHHHHHHHH--CCCEEEECCCCCC------CEEEEEECC-CCCCCCCCCCCCCCEEEEEECCCH------
Q ss_conf 0899889977899998997--0969998698661------036675238-862227872665533686002201------
Q gi|254780414|r 77 ESNIPLLGICYGQQIMCQS--LGGKTKNSQSREF------GRAFIEIKK-NCSLLKGMWEKGSKQQVWMSHGDQ------ 141 (520)
Q Consensus 77 ~~~iPILGICyG~QlLa~~--~GG~V~~~~~~Ey------G~~~I~i~~-~~~lf~gl~~~~~~~~VwmSH~D~------ 141 (520)
+.+.|+||||=|+|+|.+. +.|...+.....| -+..+.+.+ ++..++++ .......+|.+|++.
T Consensus 80 ~~g~~vLGICNGfQiL~~lGllpg~~~~n~~~~~~~~~~~r~v~l~v~~~~s~f~~~~-~~g~~l~ipvaHgEGr~~~~~ 158 (238)
T cd01740 80 ERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFVTLRVENNDSPFTKGY-MEGEVLRIPVAHGEGRFYADD 158 (238)
T ss_pred CCCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHCC-CCCCEEEEEEECCCEEEECCH
T ss_conf 4897489853056788870677850014877654675600579999789998677165-789888888753723597182
Q ss_pred --HHCCCCCCCEE-------------ECCCCC---CEEEEEECCCCEEEEEEEEHHHC----------CCHHHHHHHH
Q ss_conf --10124442112-------------323983---17889863500112465212221----------5202577998
Q gi|254780414|r 142 --VEHIPEGFEVI-------------ASSDST---PFAFIADEKRKYYAVQFHPEVVH----------TVGGSQLIDN 191 (520)
Q Consensus 142 --V~~lP~gf~vi-------------A~S~~~---~iaai~~~~~~iyGVQFHPEV~h----------T~~G~~iL~N 191 (520)
+.++-+.-.++ -.+.|+ .||+|.+.+.+++|++-|||-.- ...|.+|++|
T Consensus 159 ~~l~~l~~~~~i~~~~~~~~~~~~~yP~NPNGS~~~IAGI~s~~GrvlgmMPHPER~~~~~q~~~~~~~~~g~~~F~n 236 (238)
T cd01740 159 ETLAELEENGQIAQYVDDDGNVTERYPANPNGSLDGIAGICNEDGRVLGMMPHPERAVEPWQWERLLGGSDGLKLFRN 236 (238)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHCEEEEECCCCCEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 878999867956999957998022688899888202127887999999974785773065556567889818999975
No 112
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.98 E-value=4.4e-08 Score=78.01 Aligned_cols=184 Identities=21% Similarity=0.330 Sum_probs=119.0
Q ss_pred CCEEEEEECCCCHHHH-HHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCC--CCCCCCC----CCCCH---HHH
Q ss_conf 8869999889705788-998888659406985289898899723997999985388--9999999----75376---898
Q gi|254780414|r 7 SSKVLIIDFGSQFTQL-IARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPA--SSLDIDS----PQIPK---EIL 76 (520)
Q Consensus 7 ~~~IlIlDfGSQytqL-IaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~--SV~d~~a----p~~~~---~I~ 76 (520)
..||+|+-|-..-.+. .++.++.+|...+.+.++... ...+++++++-||=+ -+...++ +.+.+ +.+
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~---~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a 78 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLL---LGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFA 78 (231)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECC---CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 95699997078684599999999849982499855035---677746899748877643357326775578999999998
Q ss_pred HCCCCEEEECHHHHHHHHH--CCCEEEECCCCCC--CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCH--------HHC
Q ss_conf 0899889977899998997--0969998698661--036675238862227872665533686002201--------101
Q gi|254780414|r 77 ESNIPLLGICYGQQIMCQS--LGGKTKNSQSREF--GRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQ--------VEH 144 (520)
Q Consensus 77 ~~~iPILGICyG~QlLa~~--~GG~V~~~~~~Ey--G~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~--------V~~ 144 (520)
+.+.|+||||=|+|+|..+ +-|...+.....| -+..+++.++..+|..-.+......+--+|++. ..+
T Consensus 79 ~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~ 158 (231)
T COG0047 79 EKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAE 158 (231)
T ss_pred HCCCEEEEECCHHHHHHHCCCCCCCEECCCCCCEEEEEEEEEEECCCCHHHHHCCCCCEEEEEEEECCEEEECCHHHHHH
T ss_conf 68971999853508989727577610247898458898999993589877873578855987777056247716788998
Q ss_pred CCCC-CCEEECCC-----------CC---CEEEEEECCCCEEEEEEEEHHHC-----CCHHHHHHHHHH
Q ss_conf 2444-21123239-----------83---17889863500112465212221-----520257799875
Q gi|254780414|r 145 IPEG-FEVIASSD-----------ST---PFAFIADEKRKYYAVQFHPEVVH-----TVGGSQLIDNFV 193 (520)
Q Consensus 145 lP~g-f~viA~S~-----------~~---~iaai~~~~~~iyGVQFHPEV~h-----T~~G~~iL~NFl 193 (520)
+-++ -.++-..+ |+ .||++.+++.++.|++=|||=.. ++.|..|+++.+
T Consensus 159 l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~V~gmMPHPERa~~~~~g~~Dg~~lF~s~~ 227 (231)
T COG0047 159 LEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGNVLGMMPHPERASESLLGGEDGLRLFRSAR 227 (231)
T ss_pred HHHCCEEEEEEECCCCCEEEEECCCCCHHHCEEEECCCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHH
T ss_conf 754897999993699854033479899666205776999789864894443320268713899999999
No 113
>PRK13981 NAD synthetase; Provisional
Probab=98.95 E-value=1.7e-08 Score=80.97 Aligned_cols=161 Identities=19% Similarity=0.251 Sum_probs=93.1
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH---HHHHHHH
Q ss_conf 650444036640564047799999986223-656999973895515627899998862369857997588---9999996
Q gi|254780414|r 218 EQVGNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDAS---ERFIRKL 293 (520)
Q Consensus 218 ~~vg~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~---~~Fl~~L 293 (520)
.+.|-++|++|||||+||+++|++...|+| +|+++|..-.-. --.++.+--..+.+.+|+....++=+ +.|++.|
T Consensus 277 ~k~gf~~vviGLSGGiDSaL~aaiA~dALG~~nV~~v~MPs~~-tS~~s~~dA~~La~~LGi~~~~i~I~~~~~~~~~~l 355 (543)
T PRK13981 277 RKNGFPGVVLGLSGGIDSALVAAIAVDALGAENVRAVMMPSRY-TSDESLDDAAALARNLGVRYDIIPIEPAFEAFEAAL 355 (543)
T ss_pred HHHCCCEEEEECCCCHHHHHHHHHHHHHHCHHHEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
T ss_conf 8608974999767883599999999985383437886458777-866569999999999599748751499999999974
Q ss_pred CCCCCHHHHHHHHHHHHHH------HHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCH
Q ss_conf 6898889999887565899------9999997439970998646220245420246777630344302320113203202
Q gi|254780414|r 294 KNIVDPETKRKVIGQLFIE------VFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKL 367 (520)
Q Consensus 294 ~gv~DPE~KRkiIG~~Fi~------vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~l 367 (520)
+..-+-... =+-.+-|+ +....+++. -.|+-|| -|.=|.+-+. .| |-.+|.. -
T Consensus 356 ~~~f~~~~~--dvt~ENiQAR~R~~iLm~laN~~---g~lvl~T--gnkSE~avGy----~T---------lyGD~~g-~ 414 (543)
T PRK13981 356 APLFAGTEP--DITEENLQSRIRGTLLMALSNKF---GSLVLTT--GNKSEMAVGY----AT---------LYGDMAG-G 414 (543)
T ss_pred HHHHCCCCC--CCCHHHHHHHHHHHHHHHHHHCC---CCEEECC--CCHHHHHHCH----HH---------HCCCCCC-C
T ss_conf 044168766--65223454888999999987338---9679647--8672787474----65---------3376556-7
Q ss_pred HHHHHHHHHHHHHHHHHHHC-----------CCHHHHCCCCCCC
Q ss_conf 23789873899999999819-----------9988942688898
Q gi|254780414|r 368 VEPLKELFKDEVRLLGKELR-----------LPDSFVERHPCPG 400 (520)
Q Consensus 368 iEPl~~l~KdEVR~lg~~Lg-----------lp~~~~~RhPFPG 400 (520)
+-|+++++|-+|+.|.+.+. ||++++.+.|=|-
T Consensus 415 ~avi~dv~KT~V~~L~r~~n~~~~~~~~~~vip~~ii~k~pSaE 458 (543)
T PRK13981 415 FAPIKDVYKTLVYRLCRWRNTNHPGGPDGEVIPERIITKPPSAE 458 (543)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 43036865999999999986536456666756187668898977
No 114
>TIGR00552 nadE NAD+ synthetase; InterPro: IPR003694 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology .; GO: 0003952 NAD+ synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0009435 NAD biosynthetic process.
Probab=98.95 E-value=2.7e-08 Score=79.51 Aligned_cols=170 Identities=25% Similarity=0.286 Sum_probs=113.6
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHH--------HHHHHHHHHHCC-CCEEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEE
Q ss_conf 999997650444036640564047--------799999986223-6569999738955-156278999988623698579
Q gi|254780414|r 212 IVSRIKEQVGNERVICAVSGGVDS--------TVAAFLIYEAIG-INLTCVLVDHGFM-RKNEVENIISLFKGYPNFPLR 281 (520)
Q Consensus 212 ~i~~Ir~~vg~~kVi~~lSGGVDS--------tV~A~Ll~kAig-~~l~~vfVD~Gll-RknE~~~v~~~~~~~~~~~l~ 281 (520)
....+.+..|-+.|++|+|||+|| +++|+|..+++| ++.+.+.+-++-- -+...+....+.+. ++++-.
T Consensus 16 ~~~~~~~~~~~~g~v~GlsGG~ds~l~g~l~~~~v~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~a~~~~~~-~~~~~~ 94 (286)
T TIGR00552 16 LRGYVKKSPGAKGVVLGLSGGVDSTLAGKLCQAVVAALCVEALGKEQNHALLLPHSNTTPEDDVQDALALAEP-LGINYK 94 (286)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHEEEEECCCCCCCHHHHHHHHHHHHH-CCCCCE
T ss_conf 8888763257650467304762035677899999999998504611420332146678841217999998874-054421
Q ss_pred EEEHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 9758899999966--898889999887565899999999743-9970998646220245420246777630344302320
Q gi|254780414|r 282 VVDASERFIRKLK--NIVDPETKRKVIGQLFIEVFEEEAKKI-GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGG 358 (520)
Q Consensus 282 ~vda~~~Fl~~L~--gv~DPE~KRkiIG~~Fi~vf~~~a~~~-~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgg 358 (520)
.++-...+-.... ...++..-.-.-|+.--+.-....-.+ +...+|.-||=-- .|-..+ --|-+..||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gn~~~r~r~~~~y~~a~~~~~lv~gt~n~--~e~~~G-------y~t~~Gdg~ 165 (286)
T TIGR00552 95 TIDIAPIAASFQAQTETGDPLADFLAEGNLKARLRMALLYAHANKHNLLVLGTGNK--SELLLG-------YFTKYGDGG 165 (286)
T ss_pred ECCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCH--HHHHHH-------HHHHCCCCC
T ss_conf 11304677887764203443331023322247889999988731016356404613--445432-------001014420
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHCC-----CHHHHCCCCC
Q ss_conf 113203202237898738999999998199-----9889426888
Q gi|254780414|r 359 LPEHMDMKLVEPLKELFKDEVRLLGKELRL-----PDSFVERHPC 398 (520)
Q Consensus 359 lp~~~~~~liEPl~~l~KdEVR~lg~~Lgl-----p~~~~~RhPF 398 (520)
-=+-|+.+|||.||++|.+.||+ |+.++.|-|-
T Consensus 166 -------~d~~p~~~l~k~~~~~l~~~l~~~~~~~P~~~~~k~P~ 203 (286)
T TIGR00552 166 -------CDILPLGGLFKTEVYELAKRLGVEQTIIPEEIIEKPPT 203 (286)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCC
T ss_conf -------00345532237889999998175310146667337887
No 115
>PRK08349 hypothetical protein; Validated
Probab=98.89 E-value=7.9e-09 Score=83.34 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=120.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCC---CCEEEEEHHHHH---HHHHCCCC
Q ss_conf 036640564047799999986223656999973895515627899998862369---857997588999---99966898
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPN---FPLRVVDASERF---IRKLKNIV 297 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~---~~l~~vda~~~F---l~~L~gv~ 297 (520)
||++.+|||.||.|||.++-|- |-+++|+|.++|---...+.++.+.+++..+ ..+.++|..+.+ +.++....
T Consensus 2 Kvl~LlSGGiDSPVAa~~mmKR-G~~V~~lhf~~~~~~~~kv~~~~~~L~~~~~~~~~~~~iv~~~~~~~~i~~~i~~~~ 80 (198)
T PRK08349 2 KVVALLSSGIDSPVAIYLMLSR-GVEIYPLHFRQDEKKEHKARELVEILQEIHGGKVKDPVIVDAYEVQGPVFEKLREIG 80 (198)
T ss_pred EEEEEECCCCCHHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 4999965884389999999977-997999986387788999999999999970888752899772253289999998607
Q ss_pred CHHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 889999887-5658999999997439970998646220245420246777630344302320113203202237898738
Q gi|254780414|r 298 DPETKRKVI-GQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFK 376 (520)
Q Consensus 298 DPE~KRkiI-G~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~K 376 (520)
+ +.=|-++ .+.+.++.++.|++. ++..|.-| ||-+... |.|+. |-.-.-....+-++-||--+=|
T Consensus 81 ~-~~~~~vl~rr~M~riA~~iA~~~-g~~aivTG-------EsLGQVA--SQTl~---NL~~i~~~~~~pVlRPLig~DK 146 (198)
T PRK08349 81 K-EKWTCLFCKYTMYRVAERYAHEI-GAKAIVTG-------DSLGQVA--SQTLD---NLMVISTATDLPILRPLIGLDK 146 (198)
T ss_pred C-CCCEEHHHHHHHHHHHHHHHHHC-CCCEEEEC-------CHHHHHH--HHHHH---HHHHHHHHHCCCCCCCCCCCCH
T ss_conf 7-65130999999999999999985-99889845-------2167888--99998---8999987506766477667998
Q ss_pred HHHHHHHHHHCCCHHHHCCCCCCCC-CCEEEECCCCCHHHHHHHHH
Q ss_conf 9999999981999889426888983-11122100036789999999
Q gi|254780414|r 377 DEVRLLGKELRLPDSFVERHPCPGP-GLAIRCIGEITEERINILRE 421 (520)
Q Consensus 377 dEVR~lg~~Lglp~~~~~RhPFPGP-GLaiRi~g~vt~e~~~i~r~ 421 (520)
+|.-++++.+|.-+--+ +| +.. +++=+ --+|+-+++.+++
T Consensus 147 ~EII~~Ar~IGTye~S~--~~-~~cC~~~pk--~P~t~~~~~~i~~ 187 (198)
T PRK08349 147 EEIVRIAKEIGTFEISI--EP-EPPCPFVPK--FPVVRAGLGEFEK 187 (198)
T ss_pred HHHHHHHHHHCCHHHHC--CC-CCCCEEECC--CCCCCCCHHHHHH
T ss_conf 99999999819553432--89-977441089--8826889999999
No 116
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.86 E-value=6.7e-08 Score=76.70 Aligned_cols=153 Identities=18% Similarity=0.237 Sum_probs=99.3
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHH---HC-CCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 0444036640564047799999986---22-36569999738955156278--999988623698579975889999996
Q gi|254780414|r 220 VGNERVICAVSGGVDSTVAAFLIYE---AI-GINLTCVLVDHGFMRKNEVE--NIISLFKGYPNFPLRVVDASERFIRKL 293 (520)
Q Consensus 220 vg~~kVi~~lSGGVDStV~A~Ll~k---Ai-g~~l~~vfVD~GllRknE~~--~v~~~~~~~~~~~l~~vda~~~Fl~~L 293 (520)
--+++|++|+|||+||++.-.+|++ .. |-++++++||||| |..-.+ +-++.+-..+++++.+.+-.- +.
T Consensus 11 ~~~~~ilvavSGG~DS~~LL~~L~~l~~~~~~~~l~~~HvnHgl-~~~ad~~~~fv~~~c~~~~ip~~~~~~~v---~~- 85 (433)
T PRK10660 11 LESRQILVAFSGGLDSTVLLHQLVQWRTQNPGVTLRAIHIHHGL-SPNADSWVKHCEQVCQQWQVPLVVERVQL---AQ- 85 (433)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHHCCCCEEEEEEEE---CC-
T ss_conf 99998999972809999999999999986689828999971897-92669999999999997599789999872---79-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC--CCCC-CCEEEEEECCCCHHHHH---CCCH
Q ss_conf 6898889999887565899999999743997099864622024542024--6777-63034430232011320---3202
Q gi|254780414|r 294 KNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF--FGGP-SSIIKSHHNVGGLPEHM---DMKL 367 (520)
Q Consensus 294 ~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~--~~~~-~~~IKsHHNvgglp~~~---~~~l 367 (520)
.|..=-|.=|+. =.+.|++.+++ ..+||-|.=--|-+|..-. ..|. .. -..|+|... +.++
T Consensus 86 ~~~~~E~aAR~~----RY~~f~~~~~~---~~~l~tAHh~dDQaETvLlrL~RGsG~~------GL~gm~~~r~~~~~~l 152 (433)
T PRK10660 86 EGLGIEAAARQA----RYQAFARTLLP---GEVLVTAQHLDDQCETFLLALKRGSGPA------GLSAMAEVSPFAGTQL 152 (433)
T ss_pred CCCCHHHHHHHH----HHHHHHHHHHH---CCEEEECCCCCHHHHHHHHHHHCCCCCC------CCCCCCCCCCCCCCEE
T ss_conf 997699999999----99999998743---8879962456519999999986589964------4567752244789707
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 23789873899999999819998
Q gi|254780414|r 368 VEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 368 iEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
+-||=.+-|+|..+-.++.|||.
T Consensus 153 iRPLL~~~r~eI~~Y~~~~~l~~ 175 (433)
T PRK10660 153 LRPLLARTRGELEQWAQAHGLRW 175 (433)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 73744665999999999849980
No 117
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I; InterPro: IPR010075 In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This entry describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process, 0005737 cytoplasm.
Probab=98.84 E-value=3.3e-08 Score=78.88 Aligned_cols=182 Identities=23% Similarity=0.352 Sum_probs=115.5
Q ss_pred EEEEEECCCCH-HHHHHHHHH-HCCCEEEEE----CCC-CC-HHH-HHHCCCCEEEECCCCCCCCCC---------C---
Q ss_conf 69999889705-788998888-659406985----289-89-889-972399799998538899999---------9---
Q gi|254780414|r 9 KVLIIDFGSQF-TQLIARRVR-ESKVYCEVI----AFK-NA-LDY-FKEQNPQAIILSGSPASSLDI---------D--- 67 (520)
Q Consensus 9 ~IlIlDfGSQy-tqLIaRriR-elgVyseI~----P~~-~~-~e~-i~~~~p~GIILSGGP~SV~d~---------~--- 67 (520)
||+||=|...- -.=..+.++ .+||-.|++ =|+ .. ++. -.-+++++|||.||=+ |-+ -
T Consensus 2 kvAV~~FPGtNCd~D~~~A~~k~~Gv~~~~Vhikqw~~D~~r~~~~rsvfD~D~VvlPGGFS--yGDYLRaGAIAa~rvk 79 (264)
T TIGR01737 2 KVAVIRFPGTNCDRDTVYALEKLLGVDAEIVHIKQWYEDKSRLSDQRSVFDYDAVVLPGGFS--YGDYLRAGAIAALRVK 79 (264)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECHHHHCCCCCCCEEEEEEEEEECCCCC--HHHHHHHHHHHHHHCC
T ss_conf 68999779998408999999971499837998652100004787664178733488668777--2357779999987503
Q ss_pred CCCCCHHH---HHCCCCEEEECHHHHHHHHH--CCC-------------EEEECCCCCC--CEEEEEECCCCCCCCCCCC
Q ss_conf 97537689---80899889977899998997--096-------------9998698661--0366752388622278726
Q gi|254780414|r 68 SPQIPKEI---LESNIPLLGICYGQQIMCQS--LGG-------------KTKNSQSREF--GRAFIEIKKNCSLLKGMWE 127 (520)
Q Consensus 68 ap~~~~~I---~~~~iPILGICyG~QlLa~~--~GG-------------~V~~~~~~Ey--G~~~I~i~~~~~lf~gl~~ 127 (520)
+| +.++| -+.|.||||||=|+|+|..+ +=| ...+....-| -+..+.+.++...|....+
T Consensus 80 ~p-~~~~V~~~A~~G~pVLGiCNGFQIL~E~GLLpGfDeDkPlaekPemAL~~N~~~rFisr~v~LrV~n~~T~FT~~y~ 158 (264)
T TIGR01737 80 SP-IMQEVREFAEKGKPVLGICNGFQILVEAGLLPGFDEDKPLAEKPEMALLPNASLRFISRWVYLRVENADTAFTKKYK 158 (264)
T ss_pred HH-HHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEEEEEECCCHHHHCCC
T ss_conf 08-89999999955982899766479999976248988788743571224420588974532036899856783663579
Q ss_pred CCCCEEEEEECCCH---HH---------CCCCCCCEE------------ECCCCC---CEEEEEECCCCEEEEEEEEHH-
Q ss_conf 65533686002201---10---------124442112------------323983---178898635001124652122-
Q gi|254780414|r 128 KGSKQQVWMSHGDQ---VE---------HIPEGFEVI------------ASSDST---PFAFIADEKRKYYAVQFHPEV- 179 (520)
Q Consensus 128 ~~~~~~VwmSH~D~---V~---------~lP~gf~vi------------A~S~~~---~iaai~~~~~~iyGVQFHPEV- 179 (520)
...-..+---|++- +. ++-.+=+|+ ..+.|+ .||+|.|++.+++|++=|||=
T Consensus 159 kGev~~~PiAHgEGrYy~~sGke~e~~~~l~~n~qivFrY~d~~G~~~e~~NPNGS~~nIAGi~N~~gnV~GmMPHPERA 238 (264)
T TIGR01737 159 KGEVIRVPIAHGEGRYYADSGKEDETLAELESNDQIVFRYCDEDGDVSEEVNPNGSVDNIAGIVNEEGNVLGMMPHPERA 238 (264)
T ss_pred CCCEEEEEEEECCCCEECCCCCCHHHHHHHHHCCEEEEEEECCCCCEECCCCCCCCCCCEEEEECCCCCEEEECCCHHHH
T ss_conf 88788765442587266268997579999854791899976799853245478976467105780898778718980787
Q ss_pred ----HC-----CCHHHHHHHHHH
Q ss_conf ----21-----520257799875
Q gi|254780414|r 180 ----VH-----TVGGSQLIDNFV 193 (520)
Q Consensus 180 ----~h-----T~~G~~iL~NFl 193 (520)
.- +..|..||+-|+
T Consensus 239 ~~~~lg~r~eG~~DG~~Lf~~l~ 261 (264)
T TIGR01737 239 SEKLLGSRREGADDGLKLFESLV 261 (264)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 64540688756377999999999
No 118
>PRK13794 hypothetical protein; Provisional
Probab=98.82 E-value=2.7e-08 Score=79.50 Aligned_cols=178 Identities=17% Similarity=0.219 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 14067899999999765044--4036640564047799999986223656999973895515627899998862369857
Q gi|254780414|r 203 WVMSSYHKEIVSRIKEQVGN--ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPL 280 (520)
Q Consensus 203 W~~~~~~~~~i~~Ir~~vg~--~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l 280 (520)
--++++..+.++-||+.+.+ ..|....|||=||||+..|..||+|+.+..+|+|||+= .-|+.+-.+.+.+++|+++
T Consensus 224 ~~l~~~e~eAv~fir~~~~~~~~pv~VSfSGGKDS~v~L~La~ka~~~~~~vvF~DTglE-fPeT~e~ve~v~~~~gv~i 302 (473)
T PRK13794 224 NVLDKVERNSIGFMRNTIVKIGKPPSVAYSGGKDSLATLLLALKAFGNEFPVLFADTGLE-FPETLENVEDVEELYGLEI 302 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHHHHCCCE
T ss_conf 999999999999999999866998399706868999999999986089716999608887-6769999999999859878
Q ss_pred EEEEHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHC-CC--CEEEEECCCCCHHHHHHCCCCCC----CCEEEE
Q ss_conf 99758899999966898889999887565-899999999743-99--70998646220245420246777----630344
Q gi|254780414|r 281 RVVDASERFIRKLKNIVDPETKRKVIGQL-FIEVFEEEAKKI-GG--AQFLGQGTLYPDVIESISFFGGP----SSIIKS 352 (520)
Q Consensus 281 ~~vda~~~Fl~~L~gv~DPE~KRkiIG~~-Fi~vf~~~a~~~-~~--~~~L~QGTlypDvIES~~~~~~~----~~~IKs 352 (520)
+..++.+ |...++.-.=|-...+=-... =+.-..+..++. .+ ..|.+|- --||.+....+ ...|..
T Consensus 303 i~~~~~~-fw~~~~~~GpP~rd~RWCc~v~Kl~pl~~~l~~~~~~~~l~~vG~R-----~~ES~~Rak~prv~~n~~i~~ 376 (473)
T PRK13794 303 IRTSSGE-FWEKLEEYGPPARDNRWCSEVCKLSPLGKLIDEKYEGECLSFVGQR-----KYESFNRSKKPRIWRNPTIKK 376 (473)
T ss_pred EEECCCC-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-----HHHHHHHHCCCCCCCCCCCCC
T ss_conf 9915644-7788886199976660213226378999999974899718998521-----687687504874123788767
Q ss_pred EECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCC
Q ss_conf 30232011320320223789873899999999819998894268889
Q gi|254780414|r 353 HHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCP 399 (520)
Q Consensus 353 HHNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFP 399 (520)
.- .+-|+.+---=||=.-=..=++|-+=++++=|-
T Consensus 377 qi------------~~~PI~~Wtal~VwLYI~~~~lp~NpLY~~Gf~ 411 (473)
T PRK13794 377 QM------------LAAPILNWTAMHVWIYLFREKAPYNVLYEQGFD 411 (473)
T ss_pred CE------------EEECHHCCHHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf 15------------761431051879999998758998858876875
No 119
>PRK13795 hypothetical protein; Provisional
Probab=98.79 E-value=4.7e-08 Score=77.76 Aligned_cols=99 Identities=25% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 1406789999999976504--44036640564047799999986223656999973895515627899998862369857
Q gi|254780414|r 203 WVMSSYHKEIVSRIKEQVG--NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPL 280 (520)
Q Consensus 203 W~~~~~~~~~i~~Ir~~vg--~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l 280 (520)
--++++..+.++-||+.+. +..|..+.|||=||+|+..|..||++ ++..+|+||||== -|+.+-.+.+++.+|+++
T Consensus 224 ~~l~~~e~eAv~fir~~~~~~~~pv~VsfSGGKDS~v~L~La~ka~~-~~~~~f~dTglEf-PeT~e~v~~~~~~~gi~~ 301 (630)
T PRK13795 224 KHLEEKEKEAVNFIREVAEKYNLPVVVSFSGGKDSLVVLDLAAEALR-KFKAFFNNTGLEF-PETVENVKEVAEEYGVEL 301 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCC-HHHHHHHHHHHHHHCCCE
T ss_conf 99999999999999987875489759952686899999999998549-8289995077676-469999999999869818
Q ss_pred EEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 99758899999966898889999
Q gi|254780414|r 281 RVVDASERFIRKLKNIVDPETKR 303 (520)
Q Consensus 281 ~~vda~~~Fl~~L~gv~DPE~KR 303 (520)
..++|.+.|...++-..=|-.-.
T Consensus 302 ~~~~a~~~fw~~~~~~GpP~rd~ 324 (630)
T PRK13795 302 IVADAGDAFWRAIEKFGPPARDY 324 (630)
T ss_pred EEECCCHHHHHHHHHCCCCCCCC
T ss_conf 99656367888888749996556
No 120
>KOG2387 consensus
Probab=98.75 E-value=8.8e-09 Score=82.98 Aligned_cols=133 Identities=22% Similarity=0.343 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEE---ECCCCCC------------------
Q ss_conf 9979999853889999999753768980899889977899998997096999---8698661------------------
Q gi|254780414|r 50 NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK---NSQSREF------------------ 108 (520)
Q Consensus 50 ~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~---~~~~~Ey------------------ 108 (520)
..+||++.||-.+---++.....++.-+.++|.||||+|||+-+..|--+|- .+..-||
T Consensus 363 ~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~ 442 (585)
T KOG2387 363 SADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKT 442 (585)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 48828967866544305789999998764997576311126999999998617777873224878898679987688744
Q ss_pred --------CEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHH-----HCC-CCCCCEEECCCCC-CEEEEEECCCCEE-E
Q ss_conf --------0366752388622278726655336860022011-----012-4442112323983-1788986350011-2
Q gi|254780414|r 109 --------GRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQV-----EHI-PEGFEVIASSDST-PFAFIADEKRKYY-A 172 (520)
Q Consensus 109 --------G~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V-----~~l-P~gf~viA~S~~~-~iaai~~~~~~iy-G 172 (520)
|........+++..+.+........--.-|.+.| ..+ -.|+.-++..+++ .++.++-++.|+| |
T Consensus 443 ~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg 522 (585)
T KOG2387 443 HMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVG 522 (585)
T ss_pred CCCCEEEECCCCEEEECCCHHHHHHHCCCHHHHHHHHCCEECCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCEEE
T ss_conf 44644662464116505715789875795046565411011488999999866968985168885788998079872565
Q ss_pred EEEEEHHHCC
Q ss_conf 4652122215
Q gi|254780414|r 173 VQFHPEVVHT 182 (520)
Q Consensus 173 VQFHPEV~hT 182 (520)
+|||||...-
T Consensus 523 ~QfHPE~~sr 532 (585)
T KOG2387 523 VQFHPEFKSR 532 (585)
T ss_pred ECCCHHHHCC
T ss_conf 3137777458
No 121
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.62 E-value=5.2e-07 Score=70.32 Aligned_cols=156 Identities=24% Similarity=0.375 Sum_probs=108.7
Q ss_pred HC-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH-HHHHH---HHHH-CCCCCEEEEEHHHHHHHHH
Q ss_conf 04-44036640564047799999986223656999973895515627-89999---8862-3698579975889999996
Q gi|254780414|r 220 VG-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEV-ENIIS---LFKG-YPNFPLRVVDASERFIRKL 293 (520)
Q Consensus 220 vg-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~-~~v~~---~~~~-~~~~~l~~vda~~~Fl~~L 293 (520)
+| .+||++.||||.||.|||.++-|- |-+++++|.+++=.--.++ +.|.+ .+.+ ..++++.+||-.+. ...+
T Consensus 173 vGt~Gk~l~LlSGGIDSPVAa~~mmkR-G~~v~~v~f~~~p~t~~~a~~kv~~l~~~L~~y~~~~kl~~v~f~~~-~~~i 250 (399)
T PRK01565 173 VGTSGKALLLLSGGIDSPVAGYLAMKR-GVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTEI-QEEI 250 (399)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHH
T ss_conf 677785799861787539999999855-98799999868998778999999999999997288855999663999-9999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 689888999988756-5899999999743997099864622024542024677763034430232011320320223789
Q gi|254780414|r 294 KNIVDPETKRKVIGQ-LFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 294 ~gv~DPE~KRkiIG~-~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
..-. ||.=|-++-+ .++++.++.|++. ++.-|.-| ||-+... |.|+. |-.-.-....+-++-||-
T Consensus 251 ~~~~-~~~~~~vl~RR~M~riA~~iA~~~-~~~alvTG-------ESLGQVA--SQTl~---Nl~~i~~~~~~pVlRPLI 316 (399)
T PRK01565 251 KKKV-PESYLMTLMRRFMMRIADKIAEKR-GALAIVTG-------ESLGQVA--SQTLE---SMQAINAVTNLPVLRPLI 316 (399)
T ss_pred HHCC-CCCEEEHHHHHHHHHHHHHHHHHC-CCCEEEEC-------CHHHHHH--HHHHH---HHHHHHHHCCCCCCCCCC
T ss_conf 8608-800385999999999999999985-99789824-------1355676--75567---788887521775446655
Q ss_pred HHHHHHHHHHHHHHCCCHH
Q ss_conf 8738999999998199988
Q gi|254780414|r 373 ELFKDEVRLLGKELRLPDS 391 (520)
Q Consensus 373 ~l~KdEVR~lg~~Lglp~~ 391 (520)
-+=|+|.-++++++|.=+-
T Consensus 317 g~DK~EII~~Ar~IGTye~ 335 (399)
T PRK01565 317 GMDKEEIIEIAKEIGTYDI 335 (399)
T ss_pred CCCHHHHHHHHHHCCCCHH
T ss_conf 7898999999987096011
No 122
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.61 E-value=3.5e-06 Score=64.42 Aligned_cols=127 Identities=27% Similarity=0.352 Sum_probs=93.0
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 411140-678999999997650444-036640564047799999986223656999973895515627899998862369
Q gi|254780414|r 200 QDNWVM-SSYHKEIVSRIKEQVGNE-RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPN 277 (520)
Q Consensus 200 ~~~W~~-~~~~~~~i~~Ir~~vg~~-kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~ 277 (520)
+-+|+- +.-+++.++++|++=++. -+|+++|||.|||.+|.++.+-.|=|-.+|.+|+|+...--.+++.++.++ +|
T Consensus 35 ~i~w~~r~~~l~~l~~~~r~~~~~~YDCiv~vSGGkDS~y~~~~l~~~~gl~pL~vt~d~~~~t~~g~~Ni~~l~~~-lg 113 (343)
T TIGR03573 35 KIDWDEREKELEELVDKIKKKGGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKK-LG 113 (343)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH-CC
T ss_conf 89868899999999999971489988689868877289999999999829925999835987798999999999983-69
Q ss_pred CCEEEEEH-----HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 85799758-----8999999668988899998875658999999997439970998646
Q gi|254780414|r 278 FPLRVVDA-----SERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGT 331 (520)
Q Consensus 278 ~~l~~vda-----~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT 331 (520)
+..+.+-+ .+.+...|+.+-||+.-=-. .+...-.+.|.+. ++.+...|.
T Consensus 114 vD~i~~~~n~~~~k~l~k~~~~~~gd~~~~~~~---~i~~~~~~iA~k~-~IplIi~Ge 168 (343)
T TIGR03573 114 FDLHTITINPETFRKLQRAYFKKVGDPEWPQDH---AIFASVYQVALKF-NIPLIIWGE 168 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHHHHHC-CCCEEEECC
T ss_conf 985874699999999999999866894699999---9999999999981-999899756
No 123
>PRK08557 hypothetical protein; Provisional
Probab=98.60 E-value=4.5e-07 Score=70.76 Aligned_cols=185 Identities=18% Similarity=0.164 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHHHHHHHCCC-----CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 40678999999997650444-----0366405640477999999862236569999738955156278999988623698
Q gi|254780414|r 204 VMSSYHKEIVSRIKEQVGNE-----RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNF 278 (520)
Q Consensus 204 ~~~~~~~~~i~~Ir~~vg~~-----kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~ 278 (520)
-++++..+.++-||+.+..- .|....|||=||||++.|..+|+ +++..+|+|||+= .-|+-+-.+-+.+.+++
T Consensus 160 ~l~~~e~~Av~fir~~~~k~~~~~~pV~VSfSGGKDS~a~L~La~~a~-~~~~vvF~DTGlE-fPeT~eyve~~~~~~~~ 237 (420)
T PRK08557 160 RLDEMVENSIEILQDYVEKYKRKGYAINASFSGGKDSAVSTLLSKEVI-PDLDVVFIDTGLE-YPETLNYVKDFAKKYDI 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCC-CHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999716679746996068789999999999854-8816999628877-72389999999998099
Q ss_pred CEEEEEHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHC-CCCE-EEEECCCCCHHHHHHCCCCCCCCEEEEEEC
Q ss_conf 5799758899999966898889999887565-899999999743-9970-998646220245420246777630344302
Q gi|254780414|r 279 PLRVVDASERFIRKLKNIVDPETKRKVIGQL-FIEVFEEEAKKI-GGAQ-FLGQGTLYPDVIESISFFGGPSSIIKSHHN 355 (520)
Q Consensus 279 ~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~-Fi~vf~~~a~~~-~~~~-~L~QGTlypDvIES~~~~~~~~~~IKsHHN 355 (520)
++..++ ++.|...+..-.=|-.-.+=.... =+.-..+..++. ++.. ...+|-= --||.+... .. ...-|
T Consensus 238 ~l~~~~-~~~fw~~~~~~GpP~rd~RWCc~v~Kl~Pl~~~i~~~~~~~~vl~~~G~R---~~ES~~R~~--~~--~~~~~ 309 (420)
T PRK08557 238 NLDTVD-GDNFWDNLEKEGIPTKDNRWCNSACKLMPLKRYLKKKYGNKKVLTIDGSR---KYESFTRAN--LD--YERKS 309 (420)
T ss_pred CEEEEC-CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEC---HHHHHHHHC--CC--CCCCC
T ss_conf 679965-46689887754999766725074310178999999857898759999701---454076605--87--41347
Q ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf 32011320320223789873899999999819998894268889831
Q gi|254780414|r 356 VGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPG 402 (520)
Q Consensus 356 vgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPG 402 (520)
+-.|.. -.+-|+.+---=||=.-=..=|+|-+=++++=|--=|
T Consensus 310 -~~v~~q---~~~~PI~~Wsa~~VwLYI~~~~l~~NplY~~Gf~RvG 352 (420)
T PRK08557 310 -GFIDFQ---TNVFPILDWNSLDIWSYIFSNDILYNPMYDKGFERIG 352 (420)
T ss_pred -CCCCCC---EEEEHHHCCCHHHHHHHHHHCCCCCCHHHHCCCCCCC
T ss_conf -776665---0353153260769999999759999848866876367
No 124
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.57 E-value=7.7e-07 Score=69.09 Aligned_cols=165 Identities=15% Similarity=0.319 Sum_probs=94.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC--CCCCCCHHHHH--CCCCEE
Q ss_conf 86999988970578899888865940698528989889972399799998538899999--99753768980--899889
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI--DSPQIPKEILE--SNIPLL 83 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~--~ap~~~~~I~~--~~iPIL 83 (520)
-||-||..-.-+..- .+.++.+|+.+..+- ..+++. +.+|+|+.||-++.... ....+...+.+ .+.|||
T Consensus 3 ~kIGVLaLQG~~~eH-~~~l~~lg~~~~~Vr---~~~dL~--~idgLIiPGGESTti~~ll~~~~L~~~l~~~~~~~Pv~ 76 (179)
T PRK13526 3 QKVGVLAIQGGYQKH-ADMFKSLGVEVKLVK---FNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVF 76 (179)
T ss_pred EEEEEEEECCCHHHH-HHHHHHCCCCEEEEC---CHHHHH--CCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCEE
T ss_conf 389999962887999-999998799689971---788860--07758975997789999976755499999998589908
Q ss_pred EECHHHHHHHHHCC------CEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCC
Q ss_conf 97789999899709------699986986610366752388622278726655336860022011012444211232398
Q gi|254780414|r 84 GICYGQQIMCQSLG------GKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDS 157 (520)
Q Consensus 84 GICyG~QlLa~~~G------G~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~ 157 (520)
|.|-|+-+||+.-+ -+|.|.. ||+..=....+-. +.+ ..+..-.--.=.|.++.++-+++|+-++
T Consensus 77 GTCAGlILLak~~~~lg~ldi~V~RNa---yGrQ~~SFe~~~~-~~~-----~~~~avFIRAP~I~~vg~~V~vLa~~~~ 147 (179)
T PRK13526 77 GTCAGSIILSKGEGYLNLLDLEVQRNA---YGRQVDSFVADIS-FND-----KNITGVFIRAPKFIVVGNQVDILSKYQN 147 (179)
T ss_pred EECCEEEEEECCCCCCCCEEEEEEECC---CCCCCCEEEEECC-CCC-----CCEEEEEECCCCEEECCCCCEEEEEECC
T ss_conf 861206898269876671358998255---4574320587136-589-----9536999827518880899589999899
Q ss_pred CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 317889863500112465212221520257799875
Q gi|254780414|r 158 TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 158 ~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.+++. ++.++.|.-||||.+.. ..+-+-|+
T Consensus 148 ~~V~v---rqgn~la~sFHPELt~D---~r~H~yFl 177 (179)
T PRK13526 148 SPVLL---RQANILVSSFHPELTQD---PTVHEYFL 177 (179)
T ss_pred EEEEE---EECCEEEEEECCCCCCC---CHHHHHHH
T ss_conf 88999---98999999828875487---77999974
No 125
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase; InterPro: IPR012795 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=98.55 E-value=1.3e-06 Score=67.37 Aligned_cols=156 Identities=26% Similarity=0.372 Sum_probs=104.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHH---CCCC-------EEEEEECCCCC--CCC-CHHHHHHHHHHCCCCCEEEEE-HHHHH
Q ss_conf 0366405640477999999862---2365-------69999738955--156-278999988623698579975-88999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEA---IGIN-------LTCVLVDHGFM--RKN-EVENIISLFKGYPNFPLRVVD-ASERF 289 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kA---ig~~-------l~~vfVD~Gll--Rkn-E~~~v~~~~~~~~~~~l~~vd-a~~~F 289 (520)
++++|+|||+||.+..-+|.+- ++.+ +.+++||||+= -.. |.+.|.+..+ ..++++.+.. ..-.=
T Consensus 1 ~~lvAvSGG~DS~aLL~~L~~~~~~~~~~~~~~~~~~~a~h~nH~lR~~s~~~~~~~v~~~c~-~~~~~~~~~~~~~~~~ 79 (204)
T TIGR02432 1 KILVAVSGGVDSMALLHLLLKLQPKLKISWQIKDFKLIAAHVNHGLRPESAQEEAEFVQQFCE-KLNIPLEIKKLVDVKA 79 (204)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCC
T ss_conf 978886286427999999999766327877887506899996177884158999999999999-6189569984212411
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHCC--CCCCCCEEEEEECCCC---HHHH-
Q ss_conf 9996689888999988756589999999974399-7099864622024542024--6777630344302320---1132-
Q gi|254780414|r 290 IRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGG-AQFLGQGTLYPDVIESISF--FGGPSSIIKSHHNVGG---LPEH- 362 (520)
Q Consensus 290 l~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~-~~~L~QGTlypDvIES~~~--~~~~~~~IKsHHNvgg---lp~~- 362 (520)
.. ....+.-|+.=+..- .+.|++.+++. + +++|+-|.=--|-+|..-- ..|+ .++ .-.| .+..
T Consensus 80 ~~-~~~~~~~E~~AR~~R---Y~~f~~~~~~~-~~~~~i~tAHh~dDq~ET~L~rL~RG~--~~~---Gl~g~~~~~~~~ 149 (204)
T TIGR02432 80 LA-KGKKKNLEEAAREAR---YAFFEEIAKKH-GKADYILTAHHADDQAETILMRLLRGS--GLR---GLSGMPEIRPLG 149 (204)
T ss_pred CC-CCCCCCHHHHHHHHH---HHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHHHCC--CCC---HHHHHCCCCCCC
T ss_conf 01-224767789999999---99999999972-994089972483227999999875168--700---011101336633
Q ss_pred -----HCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf -----0320223789873899999999819998
Q gi|254780414|r 363 -----MDMKLVEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 363 -----~~~~liEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
-...++=||=...|+|..+-.++-+||-
T Consensus 150 ~~g~~~~~~~~RPLL~~~k~ei~~y~~~~~l~~ 182 (204)
T TIGR02432 150 SLGWYKGGQIIRPLLNISKSEIEEYLKENGLPY 182 (204)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCE
T ss_conf 244225632770775677899999999668965
No 126
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=98.55 E-value=1.4e-07 Score=74.48 Aligned_cols=102 Identities=31% Similarity=0.344 Sum_probs=75.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 366405640477999999862236569999738955-1562789999886236985799758899999966898889999
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFM-RKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKR 303 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~Gll-RknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KR 303 (520)
|++++|||+||+|+|.+++++ |.++.++++|+|.+ |.++.++..+.
T Consensus 1 ~~v~~sgG~ds~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~-------------------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL-GYQVIAVTVDHGISPRLEDAKEIAKE-------------------------------- 47 (103)
T ss_pred CEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHH--------------------------------
T ss_conf 989742882219999999986-98628999853766278899999999--------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 887565899999999743997099864622024542024677763034430232011320320223789
Q gi|254780414|r 304 KVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 304 kiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
.+.+...+.+.+ .+++.++.|+.+.|+...+.... . ++|+.+.+.......+|||.
T Consensus 48 -----~~~~~~~~~a~~-~~~~~i~~G~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~pl~ 103 (103)
T cd01986 48 -----AREEAAKRIAKE-KGAETIATGTRRDDVANRALGLT-----A--LLNLTVTLSGAGIQSLEPLI 103 (103)
T ss_pred -----HHHHHHHHHHHH-CCCHHHCCCCCHHHHHHHHHHHH-----H--HHHEEEEECCCCCCCCCCCC
T ss_conf -----999999999886-17214304753167788776189-----8--86304785145501035679
No 127
>PRK01269 thiamine biosynthesis protein ThiI; Provisional
Probab=98.54 E-value=7.5e-07 Score=69.18 Aligned_cols=158 Identities=21% Similarity=0.332 Sum_probs=107.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--HHHHHHHHHH----CCCCCEEEEEHHHHHHHHHCC
Q ss_conf 4403664056404779999998622365699997389551562--7899998862----369857997588999999668
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE--VENIISLFKG----YPNFPLRVVDASERFIRKLKN 295 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE--~~~v~~~~~~----~~~~~l~~vda~~~Fl~~L~g 295 (520)
.++|++.+|||.||.|||.++-|- |-+.+++|.+-|=-. .| .+++...+.+ ...+.++.||..+..-.-+..
T Consensus 177 qGkvL~LlSGGiDSPVAa~~mmKR-G~~v~~l~F~lg~~~-~e~~V~~va~~L~~~~~~~~~vr~~~V~f~~v~~eI~~~ 254 (483)
T PRK01269 177 QEDVLSLISGGFDSGVASYMLMRR-GSRVHYCFFNLGGAA-HEIGVKQVAHYLWNRYGSSHRVRFISVDFEPVVGEILEK 254 (483)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC-CCEEEEEEECCCCHH-HHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 786899952788838889999845-987999995799868-899999999999997388887089997679999999873
Q ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHH
Q ss_conf 988899998875-6589999999974399709986462202454202467776303443023201132032022378987
Q gi|254780414|r 296 IVDPETKRKVIG-QLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKEL 374 (520)
Q Consensus 296 v~DPE~KRkiIG-~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l 374 (520)
+ |+.-+-++- +.++++.++.|++. ++.-|.-| ||-+... |.|+. |-.-.-....+-++-||--+
T Consensus 255 v--~~~~~~vv~KR~M~R~A~~iA~~~-g~~ALVTG-------ESLGQVA--SQTL~---NL~~i~~~~~~pVlRPLIg~ 319 (483)
T PRK01269 255 V--DNGQMGVVLKRMMLRAASKVAERY-GIQALVTG-------EALGQVS--SQTLT---NLRLIDNVTDTLILRPLIAM 319 (483)
T ss_pred C--CHHHEEHHHHHHHHHHHHHHHHHC-CCCEEEEC-------CCHHHHH--HHHHH---HHHHHHHHCCCCEECCCCCC
T ss_conf 8--763443999999999999999985-99889855-------5034567--76787---88998874077400476679
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCC
Q ss_conf 38999999998199988942688
Q gi|254780414|r 375 FKDEVRLLGKELRLPDSFVERHP 397 (520)
Q Consensus 375 ~KdEVR~lg~~Lglp~~~~~RhP 397 (520)
-|+|.-++++++|--+ +-.+.|
T Consensus 320 DK~eII~~Ar~IGTye-~s~~~p 341 (483)
T PRK01269 320 DKEDIIDLARQIGTED-FAKTMP 341 (483)
T ss_pred CHHHHHHHHHHHCHHH-HHCCCC
T ss_conf 8899999999839287-760368
No 128
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.53 E-value=4.7e-07 Score=70.66 Aligned_cols=144 Identities=23% Similarity=0.283 Sum_probs=87.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 03664056404779999998622365699997389551562789999886236985799758899999966898889999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKR 303 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KR 303 (520)
|+++.+|||.||||+++.+.+. |..++++++|-|---.-|.+.... +.++++-. .+|-. |
T Consensus 1 kavvllSGGlDSt~~l~~~~~~-g~~v~~l~~dYGQr~~~E~~~a~~-i~~~l~~~-~~VP~-----------------R 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE-GYEVHALSFDYGQRHAKEEEAAKL-IAEKLGPS-TYVPA-----------------R 60 (169)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEEECCCCHHHHHHHHHH-HHHHHCCC-CEECC-----------------C
T ss_conf 9899907878899999999984-996999997569854999999999-99996899-46528-----------------3
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCEE-EEEC--CCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8875658999999997439--9709-9864--622024542024677763034430232011320320223789873899
Q gi|254780414|r 304 KVIGQLFIEVFEEEAKKIG--GAQF-LGQG--TLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDE 378 (520)
Q Consensus 304 kiIG~~Fi~vf~~~a~~~~--~~~~-L~QG--TlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdE 378 (520)
. -.|+-+---.|..++ .+.+ ..++ +.|||-=.. -|++-.+.-.+-.....+++-||.++-|.|
T Consensus 61 N---~ifls~A~~~A~~~g~~~v~~G~~~~d~~~ypDc~~~---------F~~a~~~~~~~~~~~~v~i~aP~~~~~K~e 128 (169)
T cd01995 61 N---LIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDCRPE---------FIEAMNKALNLGTENGIKIHAPLIDLSKAE 128 (169)
T ss_pred H---HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHH---------HHHHHHHHHHHCCCCCCEEEECCCCCCHHH
T ss_conf 8---9999999999998299968999824775689998699---------999999999830879858984333598999
Q ss_pred HHHHHHHHCCCHHHHCCCCCC
Q ss_conf 999999819998894268889
Q gi|254780414|r 379 VRLLGKELRLPDSFVERHPCP 399 (520)
Q Consensus 379 VR~lg~~Lglp~~~~~RhPFP 399 (520)
+-++|.+||+|-+..|-=--|
T Consensus 129 iv~~g~~lgv~~~~T~SCy~g 149 (169)
T cd01995 129 IVRLGGELGVPLELTWSCYNG 149 (169)
T ss_pred HHHHHHHCCCCHHHCCCCCCC
T ss_conf 999998849979982157799
No 129
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=98.50 E-value=6.3e-06 Score=62.57 Aligned_cols=167 Identities=20% Similarity=0.288 Sum_probs=111.1
Q ss_pred HC-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHH------HCCCCCEEEEEHHHHHHHH
Q ss_conf 04-4403664056404779999998622365699997389551562789999886------2369857997588999999
Q gi|254780414|r 220 VG-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFK------GYPNFPLRVVDASERFIRK 292 (520)
Q Consensus 220 vg-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~------~~~~~~l~~vda~~~Fl~~ 292 (520)
|| .+|++|.||||.||-|||.|+-|- |-..+++|.+++=-...+..+-...++ ....+.+..+|..+..-.-
T Consensus 172 vGt~Gk~l~LlSGGIDSPVA~~l~mkR-G~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i 250 (383)
T COG0301 172 VGTQGKVLLLLSGGIDSPVAAWLMMKR-GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEI 250 (383)
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHH
T ss_conf 566774899970787749999999856-9877999972799851889999999986430246872289997629999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 66898889999887565899999999743997099864622024542024677763034430232011320320223789
Q gi|254780414|r 293 LKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 293 L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
+..+.+ ...=-.--+.|+++.++.|.+. ++.-+.-| ||-+... |.|. +|-.-.-....+-++-||-
T Consensus 251 ~~~~~~-~y~~v~~rR~M~riA~~iae~~-g~~aIvtG-------EsLGQVA--SQTl---~nL~~i~~~t~~pIlRPLI 316 (383)
T COG0301 251 LEKVPE-SYRCVLLKRMMYRIAEKLAEEF-GAKAIVTG-------ESLGQVA--SQTL---ENLRVIDSVTNTPVLRPLI 316 (383)
T ss_pred HHHCCC-CCEEHHHHHHHHHHHHHHHHHH-CCEEEEEC-------CCCHHHH--HHHH---HHHHHHHHCCCCCEECCCC
T ss_conf 863675-3020478999999999999983-98399836-------8610466--7678---8899998155874231445
Q ss_pred HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
Q ss_conf 8738999999998199988942688898311
Q gi|254780414|r 373 ELFKDEVRLLGKELRLPDSFVERHPCPGPGL 403 (520)
Q Consensus 373 ~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGL 403 (520)
-+-|+|.-++++++|..+--+ +|+...+.
T Consensus 317 ~~DK~eIi~~Ar~IgT~eiSi--~p~e~cc~ 345 (383)
T COG0301 317 GLDKEEIIEIARRIGTYEISI--EPPEDCCV 345 (383)
T ss_pred CCCHHHHHHHHHHHCCHHHHC--CCCCCCCC
T ss_conf 799899999999829744313--57888857
No 130
>pfam04204 HTS Homoserine O-succinyltransferase.
Probab=98.48 E-value=3.9e-06 Score=64.12 Aligned_cols=160 Identities=22% Similarity=0.301 Sum_probs=100.1
Q ss_pred CHHHHHHCCCCEEEECCCCCCC--CCCCCCCC-CHHHHH---C-CCCEEEECHHHHH-HHHHCCCEEEECCCCCCCEEEE
Q ss_conf 9889972399799998538899--99999753-768980---8-9988997789999-8997096999869866103667
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGSPASS--LDIDSPQI-PKEILE---S-NIPLLGICYGQQI-MCQSLGGKTKNSQSREFGRAFI 113 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGGP~SV--~d~~ap~~-~~~I~~---~-~iPILGICyG~Ql-La~~~GG~V~~~~~~EyG~~~I 113 (520)
++++++..+++|+|++|-|-.- +++-..+- ..+|++ . -...|.||+|.|. |-+.+|=.-...+.+-+|...-
T Consensus 90 ~f~~ik~~~~DGlIITGAPvE~l~FeeV~YW~El~~I~dWs~~~v~Stl~iCWaAqAaL~~~ygI~K~~l~~KlfGVf~h 169 (298)
T pfam04204 90 TFDEIKDEKFDGLIITGAPVEHLPFEDVDYWEELTEIMDWSKTNVTSTLHICWGAQAALYHFYGIPKHLLPEKLFGVFRH 169 (298)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 19999658875699728987778855374199999999999862544045749999999998199800178745885123
Q ss_pred EE-CCCCCCCCCCCCCCCCEEEEEECCCHH--HC--CCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHH
Q ss_conf 52-388622278726655336860022011--01--24442112323983178898635001124652122215202577
Q gi|254780414|r 114 EI-KKNCSLLKGMWEKGSKQQVWMSHGDQV--EH--IPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQL 188 (520)
Q Consensus 114 ~i-~~~~~lf~gl~~~~~~~~VwmSH~D~V--~~--lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~i 188 (520)
.+ ..+++++.|+.+ .+.+-.|-.-.+ .. -.++++++|.|+..-+..+..++.+..=+|-|||-.- ..+
T Consensus 170 ~~~~~~~pLlrGfdd---~f~~PhSR~t~i~~~~i~~~~~L~iLa~s~~~G~~l~~~~d~r~vf~~GH~EYd~----~TL 242 (298)
T pfam04204 170 RVLDPHSPLLRGFDD---EFYAPHSRHTEVRREDIEAVPGLEILAESEEAGVYLVASKDGRQVFVTGHPEYDA----DTL 242 (298)
T ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCCCH----HHH
T ss_conf 457899801047876---5306742334699889713788479867787761799828988688827866675----489
Q ss_pred HHHHHHHHCCCCCCCCCHHH
Q ss_conf 99875501064411140678
Q gi|254780414|r 189 IDNFVHHVAGIQDNWVMSSY 208 (520)
Q Consensus 189 L~NFl~~Ic~~~~~W~~~~~ 208 (520)
.+-+..++.+-...--+.||
T Consensus 243 ~~EY~RD~~~g~~~~~P~NY 262 (298)
T pfam04204 243 KDEYERDLAKGLDIPIPENY 262 (298)
T ss_pred HHHHHHHHHCCCCCCCCCCC
T ss_conf 99999999769998999888
No 131
>pfam06508 ExsB ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea.
Probab=98.47 E-value=8.7e-07 Score=68.75 Aligned_cols=107 Identities=23% Similarity=0.306 Sum_probs=69.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHH---HHHCCCCC--
Q ss_conf 0366405640477999999862236569999738955156278999988623698579975889999---99668988--
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFI---RKLKNIVD-- 298 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl---~~L~gv~D-- 298 (520)
||++.+|||+||||++.+..+. |++++|+++|.|..-.-|.+.-.+ +.+++|++.+++|-+.... ++|-+-..
T Consensus 1 Kavvl~SGG~DSt~~l~~a~~~-~~~v~ait~dYGQ~~~~Ei~~A~~-ia~~l~i~h~vidl~~l~~~~~saL~~~~~~v 78 (137)
T pfam06508 1 KAVVLLSGGLDSTTCLAWAKKE-GYEVYALTFDYGQRHSKELECAKK-IAKALGVEHKIVDLDFLKQIGGSALTDDSIEV 78 (137)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHHHHHH-HHHHCCCCCEEECCCHHHHHCCCCCCCCCCCC
T ss_conf 9899917878999999999986-996899981478873999999999-99982997503033024441655223688555
Q ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECC------CCCHH
Q ss_conf 899-------------998875658999999997439970998646------22024
Q gi|254780414|r 299 PET-------------KRKVIGQLFIEVFEEEAKKIGGAQFLGQGT------LYPDV 336 (520)
Q Consensus 299 PE~-------------KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT------lypDv 336 (520)
|+. -|.+ .|+-+.-..|..+ ++..++-|+ .|||-
T Consensus 79 p~~~~~~~~~~~t~VP~RN~---iflsiA~a~A~~~-g~~~I~~G~~~~D~~~YPDc 131 (137)
T pfam06508 79 PDSELESEEIPNTYVPGRNL---IFLSIAASYAEAI-GANDIFIGVNEEDFSGYPDC 131 (137)
T ss_pred CCCCCCCCCCCCCEEECCHH---HHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCC
T ss_conf 66543456787765636549---9999999999986-99979995655756889998
No 132
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=98.40 E-value=4.6e-06 Score=63.59 Aligned_cols=149 Identities=21% Similarity=0.269 Sum_probs=95.6
Q ss_pred CHHHHHHCCCCEEEECCCCCCC--CCCCCCCC-CHHHHH----CCCCEEEECHHHHHHH-HHCCCEEEECCCCCCCEEEE
Q ss_conf 9889972399799998538899--99999753-768980----8998899778999989-97096999869866103667
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGSPASS--LDIDSPQI-PKEILE----SNIPLLGICYGQQIMC-QSLGGKTKNSQSREFGRAFI 113 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGGP~SV--~d~~ap~~-~~~I~~----~~iPILGICyG~QlLa-~~~GG~V~~~~~~EyG~~~I 113 (520)
++++++..+++|+|++|-|--- +++-..+- -.+|++ .-...|.||+|.|... +.+|=.-...+.+-+|...-
T Consensus 91 ~f~~ik~~~~DGlIITGAPvE~l~Fe~V~YW~El~~I~dws~~~v~stl~iCWaA~AaL~~~ygI~K~~l~~K~fGVf~h 170 (302)
T PRK05368 91 TFEDIKDQKFDGLIVTGAPVELLPFEDVDYWDELREILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEH 170 (302)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCEECCCCEEEEECC
T ss_conf 49999658776699728987778855374199999999999862652256749999999997099710068735875122
Q ss_pred EE-CCCCCCCCCCCCCCCCEEEEEE-CCCHH--HCC--CCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHH
Q ss_conf 52-3886222787266553368600-22011--012--444211232398317889863500112465212221520257
Q gi|254780414|r 114 EI-KKNCSLLKGMWEKGSKQQVWMS-HGDQV--EHI--PEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQ 187 (520)
Q Consensus 114 ~i-~~~~~lf~gl~~~~~~~~VwmS-H~D~V--~~l--P~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~ 187 (520)
.+ ..+++|+.|+.+ .+.+--| |. .| .++ .++++++|.|+..-+..+..++.+..=+|-|||-.- ..
T Consensus 171 ~~~~~~~pL~rGfdd---~f~~PhSR~t-ei~~~~i~~~~~L~ILa~s~e~G~~l~~s~~~r~vfi~GH~EYd~----~T 242 (302)
T PRK05368 171 RVLVPHHPLLRGFDD---SFLVPHSRYT-EVREEDIRAATGLEILAESEEAGVYLFASKDKRIVFVTGHPEYDA----DT 242 (302)
T ss_pred CCCCCCCHHHCCCCC---CCCCCCCCCC-CCCHHHHHHCCCCEEEECCCCCCCEEEECCCCCEEEEECCCCCCH----HH
T ss_conf 346899800137876---5306741223-689999950889679863677771699828988688827866675----48
Q ss_pred HHHHHHHHHCC
Q ss_conf 79987550106
Q gi|254780414|r 188 LIDNFVHHVAG 198 (520)
Q Consensus 188 iL~NFl~~Ic~ 198 (520)
+.+-+..++.+
T Consensus 243 L~~EY~RD~~~ 253 (302)
T PRK05368 243 LAREYFRDLGR 253 (302)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999976
No 133
>PRK08576 hypothetical protein; Provisional
Probab=98.38 E-value=2.7e-06 Score=65.16 Aligned_cols=177 Identities=19% Similarity=0.171 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 67899999999765044403664056404779999998622365699997389551562789999886236985799758
Q gi|254780414|r 206 SSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDA 285 (520)
Q Consensus 206 ~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda 285 (520)
+.|.+..++-++ ++++..||...|||=|||++-.|..||++ ++..||||||+==..-.+.|.+ +.+++|++++..++
T Consensus 220 ~~~e~~s~~fL~-~~~~~~iiVp~SGGKDStA~LlLA~ea~~-dv~aVfvDTGlEfPeT~eyVe~-va~klGv~lv~a~~ 296 (439)
T PRK08576 220 EAFEKASIEFLE-KFGEYTIIVPWSGGKDSTAALLLALKAFD-EVTAVYVDTGYEMPLTDEYVEK-VAEKLGVDLIRAGV 296 (439)
T ss_pred HHHHHHHHHHHH-HCCCCCEEEECCCCHHHHHHHHHHHHHHC-CEEEEEEECCCCCHHHHHHHHH-HHHHHCCEEEEECC
T ss_conf 999999999999-62898889956887799999999998618-8369997079865758999999-99985976999478
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCC
Q ss_conf 89999996689888999988756589999999974399709986462202454202467776303443023201132032
Q gi|254780414|r 286 SERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDM 365 (520)
Q Consensus 286 ~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~ 365 (520)
..-| .+.+--=|-..++=....=++-..+.+++..+ ..+.+|- ---||.... ...-++..--++|+..
T Consensus 297 d~~~--~i~~~G~Pt~d~RWCtk~KL~PL~~~i~~~~~-~l~~vG~---R~~ES~~R~-~~~~v~~rn~~vg~~~----- 364 (439)
T PRK08576 297 DVPM--PIEGYGLPTHENRWCTKMKVEALYEAIRELSN-PLLVVGD---RDGESARRR-LRPPVRERETDFGKIL----- 364 (439)
T ss_pred CCCC--HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC-CEEEECC---CHHHHHHHH-CCCCEEECCCCCCCCE-----
T ss_conf 8642--21047999766633102002558999996489-7699527---256547761-1896355047777726-----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
Q ss_conf 022378987389999999981999889426888
Q gi|254780414|r 366 KLVEPLKELFKDEVRLLGKELRLPDSFVERHPC 398 (520)
Q Consensus 366 ~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPF 398 (520)
-+-|+++----+|-.-=..-|+|-+=++.+=|
T Consensus 365 -~~~PIk~Wsa~~VwLYI~~~gip~NPLY~kGF 396 (439)
T PRK08576 365 -VVMPLKFWSGAMVQLYILMNGIELNPLYYEGF 396 (439)
T ss_pred -EEECHHHCCHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf -67234307699999999975999984787477
No 134
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.30 E-value=1.3e-06 Score=67.58 Aligned_cols=157 Identities=21% Similarity=0.268 Sum_probs=94.2
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHCCCCC-EEEEEHHH---HHHHHHCCC-
Q ss_conf 40366405640477999999862236569999738955156-2789999886236985-79975889---999996689-
Q gi|254780414|r 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN-EVENIISLFKGYPNFP-LRVVDASE---RFIRKLKNI- 296 (520)
Q Consensus 223 ~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn-E~~~v~~~~~~~~~~~-l~~vda~~---~Fl~~L~gv- 296 (520)
+|+++.+|||.||||++++..+. |++++++.+|-|- |.. |-+.-.. +.+++|+. -.++|-+- ..-++|-.-
T Consensus 2 kkavVLlSGGlDStt~L~~a~~~-~~~v~alsfdYGQ-rh~~El~~A~~-ia~~~gv~~h~vidl~~l~~~~~SaLt~~~ 78 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ-YDEVHCITFDYGQ-RHRAEIDVARE-LALKLGARAHKVLDVTLLNELAVSSLTRDS 78 (231)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEEEECCC-CCHHHHHHHHH-HHHHCCCCCEEEECCHHHHHHCCCCCCCCC
T ss_conf 80899907878999999999981-9949999877786-71999999999-999859840067532777775235667778
Q ss_pred -CCHHHH--HHHHHHH--------HHHHHHHHHHHCCCCEEEEECC------CCCHH----HHHHCCCCCCCCEEEEEEC
Q ss_conf -888999--9887565--------8999999997439970998646------22024----5420246777630344302
Q gi|254780414|r 297 -VDPETK--RKVIGQL--------FIEVFEEEAKKIGGAQFLGQGT------LYPDV----IESISFFGGPSSIIKSHHN 355 (520)
Q Consensus 297 -~DPE~K--RkiIG~~--------Fi~vf~~~a~~~~~~~~L~QGT------lypDv----IES~~~~~~~~~~IKsHHN 355 (520)
.-|+.. ..-+-.| |+.+.--.|..++ ++.+.-|. .|||- |++-.. .+ |
T Consensus 79 i~vp~~~~~~~~~p~T~VP~RN~ifLsiAaa~Ae~~g-a~~I~~G~~~~D~sgYPDCr~eFi~a~~~------al----~ 147 (231)
T PRK11106 79 IPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVK-AEAVITGVCETDFSGYPDCRDEFVKALNH------AV----V 147 (231)
T ss_pred CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCHHHHHHHHH------HH----H
T ss_conf 7777765444578764671672999999999999859-99599804655668899898999999999------99----8
Q ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHH---HHHCCCHHHHCCC
Q ss_conf 3201132032022378987389999999---9819998894268
Q gi|254780414|r 356 VGGLPEHMDMKLVEPLKELFKDEVRLLG---KELRLPDSFVERH 396 (520)
Q Consensus 356 vgglp~~~~~~liEPl~~l~KdEVR~lg---~~Lglp~~~~~Rh 396 (520)
.| . .-+.+|.-||.+|-|-|+-+|| ..||+|-+..|-=
T Consensus 148 ~g-~--~~~i~i~aPl~~l~K~eiv~l~~~~~~L~~p~~~TwSC 188 (231)
T PRK11106 148 LG-M--AKDIRFETPLMWLDKAETWALADYYGQLDLVRHETLTC 188 (231)
T ss_pred HC-C--CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 51-7--89819983777788889999998616668650235527
No 135
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=98.29 E-value=2.3e-05 Score=58.57 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=103.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHH----HCCCC
Q ss_conf 0366405640477999999862236--56999973895515627899998862369857997588999999----66898
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGI--NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRK----LKNIV 297 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~--~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~----L~gv~ 297 (520)
+++++.|||-||||+..|+.+|... .+.-+|+|||.. -.|..+-.+.+.+.+++++..+-....+... ..+-.
T Consensus 1 ~~~vsfSGGKDS~vll~L~~~~~~~~~~~~vvf~DTg~e-~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYE-FPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFP 79 (173)
T ss_pred CEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCC
T ss_conf 959996464999999999999665558837999688898-9899999999998739907999689728999986135779
Q ss_pred CHHHHHHHHHH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHH
Q ss_conf 88999988756-58999999997439970998646220245420246777630344302320113203202237898738
Q gi|254780414|r 298 DPETKRKVIGQ-LFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFK 376 (520)
Q Consensus 298 DPE~KRkiIG~-~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~K 376 (520)
.|...+.--.. .-++-+.+..++. +.....-|+=.. ||... .......+..+ .+ +.-.+-||.+.-.
T Consensus 80 ~~~~~~~~c~~~~K~~P~~~~~~~~-~~~~~~~GiR~~---Es~~R--~~~~~~~~~~~---~~---~~~~~~Pi~~Wt~ 147 (173)
T cd01713 80 LPSPDRRWCCRILKVEPLRRALKEL-GVVAWITGIRRD---ESARR--ALLPVVWTDDG---KG---GILKVNPLLDWTY 147 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC-CCCEEEEECCCC---CCHHH--CCCCCCCCCCC---CC---CEEEEECHHHCCH
T ss_conf 9832268898888078999999832-982899941214---62444--43762343268---89---9899932285999
Q ss_pred HHHHHHHHHHCCCHHHHCCCCCCC
Q ss_conf 999999998199988942688898
Q gi|254780414|r 377 DEVRLLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 377 dEVR~lg~~Lglp~~~~~RhPFPG 400 (520)
++|-+.=+..|+|-.-++.+-|.-
T Consensus 148 ~dVw~yi~~~~l~~~~LY~~gy~s 171 (173)
T cd01713 148 EDVWAYLARHGLPYNPLYDQGYRS 171 (173)
T ss_pred HHHHHHHHHCCCCCCCHHHCCCCC
T ss_conf 999999998399999178758987
No 136
>pfam01507 PAPS_reduct Phosphoadenosine phosphosulfate reductase family. This domain is found in phosphoadenosine phosphosulfate (PAPS) reductase enzymes or PAPS sulfotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP). It is also found in NodP nodulation protein P from Rizobium which has ATP sulfurylase activity (sulfate adenylate transferase).
Probab=98.29 E-value=1.7e-05 Score=59.48 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=108.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHH
Q ss_conf 03664056404779999998622365699997389551562789999886236985799758899999966898889999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKR 303 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KR 303 (520)
+|+++.|||=||||+.-|+.++ +..+..+|+|+|.. -.|..+-.+.+.+.++++++++.+...+...+..-..|...-
T Consensus 1 ~v~vsfSGGKDS~vlL~L~~~~-~~~~~vvf~Dtg~e-fpet~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (174)
T pfam01507 1 ELVVSFSGGKDSLVLLHLASKA-FPPGPVIFIDTGYE-FPETYEFVDELEEKYGLNLKVYRPEDSFAEGINPEGIPSKLW 78 (174)
T ss_pred CEEEEECCHHHHHHHHHHHHHH-CCCCCEEEEECCCC-CHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCHHHC
T ss_conf 9999957609999999999984-89975799978998-689999999999984981899808677987763127950114
Q ss_pred HHHHHHH--HHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8875658--99999999743997099864622024542024677763034430232011320320223789873899999
Q gi|254780414|r 304 KVIGQLF--IEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRL 381 (520)
Q Consensus 304 kiIG~~F--i~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~ 381 (520)
.--...+ ++-+.+..++.+. ..+..|+=.- ||.+.. ... +.+-.+ +.|..++ +-|+-+--.++|-+
T Consensus 79 ~~~~~~~~K~~p~~~~l~~~~~-~~~i~GiR~~---Es~~R~--~~~-~~~~~~--~~~~~~~---~~PI~~Wt~~DVw~ 146 (174)
T pfam01507 79 EDCPCRLRKVEPLKRALKKLDF-DAWFTGLRRD---ESPSRA--KLP-IVSIDG--DFPKVIK---VFPLLNWTETDVWQ 146 (174)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-CEEEEEEECC---CHHHHH--HCC-EEEEEC--CCCCEEE---EECHHHCCHHHHHH
T ss_conf 5452146651799999986599-6899951002---445664--071-674305--7888599---95005299999999
Q ss_pred HHHHHCCCHHHHCCCCCCCCC
Q ss_conf 999819998894268889831
Q gi|254780414|r 382 LGKELRLPDSFVERHPCPGPG 402 (520)
Q Consensus 382 lg~~Lglp~~~~~RhPFPGPG 402 (520)
-=+..|||..-++.+=|+=-|
T Consensus 147 yi~~~~lp~npLYd~Gy~siG 167 (174)
T pfam01507 147 YILANNVPYNPLYDQGYRSIG 167 (174)
T ss_pred HHHHCCCCCCCHHHCCCCCCC
T ss_conf 999839999956875999879
No 137
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.28 E-value=5e-05 Score=56.18 Aligned_cols=169 Identities=16% Similarity=0.333 Sum_probs=90.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHCCCCEEEECCCCCCCC-----CCCCCCCCHHHHHCCCCE
Q ss_conf 69999889705788998888659-406985289898899723997999985388999-----999975376898089988
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESK-VYCEVIAFKNALDYFKEQNPQAIILSGSPASSL-----DIDSPQIPKEILESNIPL 82 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelg-VyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~-----d~~ap~~~~~I~~~~iPI 82 (520)
+|-||-+-.-+..- .+.++.++ +. ++.- ...+++. ..+|+||.||-+... +.+-...-++....+.|+
T Consensus 2 ~IGVLalQG~v~EH-~~~l~~~~~~e--~~~V-k~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv 75 (194)
T COG0311 2 KIGVLALQGAVEEH-LEALEKAGGAE--VVEV-KRPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPV 75 (194)
T ss_pred EEEEEEECCCHHHH-HHHHHHHCCCC--EEEE-CCHHHHC--CCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCE
T ss_conf 47999850468999-99998605873--5997-1778855--37678954950789999998738489999999769964
Q ss_pred EEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCC-----------CCCCCCCCCCCCEEEEEECCCHHHCCCCCCCE
Q ss_conf 9977899998997096999869866103667523886-----------22278726655336860022011012444211
Q gi|254780414|r 83 LGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNC-----------SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEV 151 (520)
Q Consensus 83 LGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~-----------~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~v 151 (520)
||-|-||=+||+..-+. ....-.|..++.+..|. --++++.......-|+- -.-.|+++-++-++
T Consensus 76 ~GTCAGlIlLakei~~~---~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~~~~~~~avFI-RAP~I~~vg~~V~v 151 (194)
T COG0311 76 FGTCAGLILLAKEILDG---PEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFGLPFPFPAVFI-RAPVIEEVGDGVEV 151 (194)
T ss_pred EEECHHHHHHHHHHCCC---CCCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCEEEEE-ECCEEEHHCCCCEE
T ss_conf 77514256534655089---877521227899981365543123010678641367776239999-86402000676067
Q ss_pred EECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 232398317889863500112465212221520257799875
Q gi|254780414|r 152 IASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 152 iA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
+|+-++-++++- +.|+.+.-||||.+... .+-+-|+
T Consensus 152 La~l~~~iVav~---qgn~LatsFHPELT~D~---r~Heyf~ 187 (194)
T COG0311 152 LATLDGRIVAVK---QGNILATSFHPELTDDT---RLHEYFL 187 (194)
T ss_pred EEECCCEEEEEE---ECCEEEEECCCCCCCCC---CHHHHHH
T ss_conf 666088799998---67889985175435874---0999999
No 138
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.26 E-value=1.9e-05 Score=59.15 Aligned_cols=103 Identities=27% Similarity=0.364 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHH-----HCCC
Q ss_conf 44036640564047799999986223656999973895515627899998862369857997588999999-----6689
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRK-----LKNI 296 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~-----L~gv 296 (520)
.+||++|.|||-|+||+...|.+--|-.++|+.+|.|- ..|.+.+.+--.+..-.+..++|+.+.|.+. +++-
T Consensus 2 ~kKVvLAySGGLDTSv~l~wL~e~yg~eVia~~~d~Gq--~~d~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~I~an 79 (398)
T PRK00509 2 VKKVVLAYSGGLDTSVIIKWLKEEYGCEVVAFTADVGQ--GEELEPIREKALASGASEIYVEDLREEFVRDYVFPAIRAN 79 (398)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCC--HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 85499990898459999999987539889999997988--7788999999998299789996309999999999999608
Q ss_pred CCHHH--------HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 88899--------998875658999999997439970998646
Q gi|254780414|r 297 VDPET--------KRKVIGQLFIEVFEEEAKKIGGAQFLGQGT 331 (520)
Q Consensus 297 ~DPE~--------KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT 331 (520)
.--|. -|-.|.+.-+++ |++. +++++|.|-
T Consensus 80 a~Yeg~YpL~tslaRplia~~~ve~----A~~~-ga~aiaHG~ 117 (398)
T PRK00509 80 ALYEGKYPLGTALARPLIAKKLVEI----ARKE-GADAVAHGC 117 (398)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHH----HHHC-CCEEEEECC
T ss_conf 5455854552203188999999999----9971-985998545
No 139
>PRK10696 C32 tRNA thiolase; Provisional
Probab=98.21 E-value=4.4e-05 Score=56.58 Aligned_cols=166 Identities=19% Similarity=0.313 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999976504440366405640477999999862-----23656999973895515627899998862369857997
Q gi|254780414|r 209 HKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEA-----IGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283 (520)
Q Consensus 209 ~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kA-----ig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~v 283 (520)
+-++|.+-.-.--.++|+.|||||-||.+...+|+.- +.=.+.++.||+|.=-. +..-..+.++ .+|++..++
T Consensus 26 vgkAI~dy~MIedGDRVlVglSGGKDS~~LL~iL~~Lq~~api~FeLvAv~lD~~~pGf-~~~~L~~yl~-~lGvp~~i~ 103 (311)
T PRK10696 26 VGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGF-PEHILPEYLE-KLGVEYKIV 103 (311)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CHHHHHHHHH-HCCCCCEEE
T ss_conf 99999985877899999998267888999999999999858998559999837899998-8068899999-749970799
Q ss_pred EHHHHHHHHHCCCCCHHHHH--HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHC---CCCCCCCEEEEEECCCC
Q ss_conf 58899999966898889999--88756589999999974399709986462202454202---46777630344302320
Q gi|254780414|r 284 DASERFIRKLKNIVDPETKR--KVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESIS---FFGGPSSIIKSHHNVGG 358 (520)
Q Consensus 284 da~~~Fl~~L~gv~DPE~KR--kiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~---~~~~~~~~IKsHHNvgg 358 (520)
.....-. .+.. .||.|- ---++.=-..+.+.|+++ ++.-+|-|.=.-|++|+-- ..+|. +|+
T Consensus 104 ~~d~~~i--v~~~-~~egks~CslCsRlRRg~Ly~~A~e~-G~nKIALGHH~DDi~ETfLMNlf~gG~---Lkt------ 170 (311)
T PRK10696 104 EENTYGI--VKEK-IPEGKTTCSLCSRLRRGILYRTATEL-GATKIALGHHRDDILQTLFLNMFYGGK---MKG------ 170 (311)
T ss_pred EEEHHHH--HHHH-CCCCCCHHHHHHHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHHHHHCCC---CCC------
T ss_conf 8407679--9875-43688637899999999999999986-998798606505589999999996687---636------
Q ss_pred HHHHH-----CCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11320-----32022378987389999999981999
Q gi|254780414|r 359 LPEHM-----DMKLVEPLKELFKDEVRLLGKELRLP 389 (520)
Q Consensus 359 lp~~~-----~~~liEPl~~l~KdEVR~lg~~Lglp 389 (520)
+|..+ +..+|-||.+.--.+..+.++.-++|
T Consensus 171 M~Pkl~~d~g~~~VIRPL~y~~E~di~~~a~~~~fP 206 (311)
T PRK10696 171 MPPKLMSDDGKHIVIRPLAYCREKDIERFADAKAFP 206 (311)
T ss_pred CCCEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 797667489975998304201599999999975998
No 140
>KOG1559 consensus
Probab=98.20 E-value=3.3e-06 Score=64.64 Aligned_cols=187 Identities=18% Similarity=0.286 Sum_probs=94.6
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHH--HH-CCCEEEEECCCCCHHHH--HHCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 86344886999988970578899888--86-59406985289898899--723997999985388999999975376898
Q gi|254780414|r 2 HKRERSSKVLIIDFGSQFTQLIARRV--RE-SKVYCEVIAFKNALDYF--KEQNPQAIILSGSPASSLDIDSPQIPKEIL 76 (520)
Q Consensus 2 ~~~~~~~~IlIlDfGSQytqLIaRri--Re-lgVyseI~P~~~~~e~i--~~~~p~GIILSGGP~SV~d~~ap~~~~~I~ 76 (520)
++-+..++.+-=+.|+.|- -|-.| -| -|....-+-++.+.+.+ +..-+.|||+.||-. ...+-..+.+.+|
T Consensus 60 hpg~g~~~rl~n~t~~~yI--AASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwa--k~~dY~~vvkkif 135 (340)
T KOG1559 60 HPGDGASGRLKNATGRSYI--AASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWA--KRGDYFEVVKKIF 135 (340)
T ss_pred CCCCCCCCEECCCCCCCHH--HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCEEEECCCCC--CCCCHHHHHHHHH
T ss_conf 5788823201366673012--88899998718955887754880899999998736057417432--2240999999999
Q ss_pred HC---------CCCEEEECHHHHHHHHHCC-CE--EEECCCCCCCEEEEEEC----CCCCCCCCCCC-----CCCCEEEE
Q ss_conf 08---------9988997789999899709-69--99869866103667523----88622278726-----65533686
Q gi|254780414|r 77 ES---------NIPLLGICYGQQIMCQSLG-GK--TKNSQSREFGRAFIEIK----KNCSLLKGMWE-----KGSKQQVW 135 (520)
Q Consensus 77 ~~---------~iPILGICyG~QlLa~~~G-G~--V~~~~~~EyG~~~I~i~----~~~~lf~gl~~-----~~~~~~Vw 135 (520)
++ ..||.|||+|+.+|..... ++ .++.....+. ..++.. -++.+|.+++. .....-|-
T Consensus 136 nk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d~vd~A-ssLqF~~nvn~~~t~FQrFPpELLkkL~~dcLvm 214 (340)
T KOG1559 136 NKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFDAVDVA-SSLQFVGNVNIHGTMFQRFPPELLKKLSTDCLVM 214 (340)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC-CCEEEECCCCEEEHHHHHCCHHHHHHHCCCHHEE
T ss_conf 888760678663621243453899999985570687750320213-5302303554001157548999998735231100
Q ss_pred EECCCHHHCCCCCC----------CEEECC-CC---CCEEEEEECCCCEEEEEEEEHHH----------CCCHHHH---H
Q ss_conf 00220110124442----------112323-98---31788986350011246521222----------1520257---7
Q gi|254780414|r 136 MSHGDQVEHIPEGF----------EVIASS-DS---TPFAFIADEKRKYYAVQFHPEVV----------HTVGGSQ---L 188 (520)
Q Consensus 136 mSH~D~V~~lP~gf----------~viA~S-~~---~~iaai~~~~~~iyGVQFHPEV~----------hT~~G~~---i 188 (520)
..|...++ |++| .++..+ +. .-+.-++..+.|++|+|||||-. |+++..+ -
T Consensus 215 q~Hk~gis--p~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYPvtgfQWHPEKnafEWgss~IpHsedAiqvtqh 292 (340)
T KOG1559 215 QNHKFGIS--PKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYPVTGFQWHPEKNAFEWGSSDIPHSEDAIQVTQH 292 (340)
T ss_pred ECCCCCCC--HHHCCCCHHHHHHHHHEEEECCCCCEEEEEEECCEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 03323446--2304579889978765333017985079885203012410045667557432355779987217899999
Q ss_pred HHHHHHH
Q ss_conf 9987550
Q gi|254780414|r 189 IDNFVHH 195 (520)
Q Consensus 189 L~NFl~~ 195 (520)
+.||+..
T Consensus 293 aA~~lVs 299 (340)
T KOG1559 293 AANYLVS 299 (340)
T ss_pred HHHHHHH
T ss_conf 9999999
No 141
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.20 E-value=9e-06 Score=61.46 Aligned_cols=103 Identities=31% Similarity=0.432 Sum_probs=72.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHH---HHHHHHC-CCCCHH
Q ss_conf 366405640477999999862236569999738955156278999988623698579975889---9999966-898889
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASE---RFIRKLK-NIVDPE 300 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~---~Fl~~L~-gv~DPE 300 (520)
+|+++|||+|||.+|.++.+-.|-|..||.+|+|+..+-..+++.++.+..+++.....+-+. +.+..+. .+-||.
T Consensus 4 cIVpvSGGKDS~y~~~~lk~kyglnpL~Vt~~~~~~t~~g~~Nl~nl~~~g~D~~~~~~~~~~~~~l~~~~~~~~~gd~~ 83 (154)
T cd01996 4 CIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKKGLDLDHLVINPEEMKDLQLARFKAKVGDPC 83 (154)
T ss_pred EEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCH
T ss_conf 89968888189999999999949965999967987546899999999974998169932888999999999984479934
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9998875658999999997439970998646
Q gi|254780414|r 301 TKRKVIGQLFIEVFEEEAKKIGGAQFLGQGT 331 (520)
Q Consensus 301 ~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT 331 (520)
.-=..- .| ..--+.|.+. ++.+..-|.
T Consensus 84 ~~~~~~--i~-~~~~~~A~k~-~IplIi~Ge 110 (154)
T cd01996 84 WPCDTA--IF-TSLYKVALKF-GIPLIITGE 110 (154)
T ss_pred HHHHHH--HH-HHHHHHHHHC-CCCEEEECC
T ss_conf 889987--99-8999999993-999899727
No 142
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.13 E-value=1e-04 Score=54.01 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=7.8
Q ss_pred CCCCEEEECHHHHHHHHH
Q ss_conf 899889977899998997
Q gi|254780414|r 78 SNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 78 ~~iPILGICyG~QlLa~~ 95 (520)
.+.||+|+|=|+|+|+..
T Consensus 322 ~G~pi~aeCGG~~~Lg~~ 339 (451)
T PRK01077 322 AGKPIYAECGGLMYLGES 339 (451)
T ss_pred CCCCEEEECHHHHHHHHH
T ss_conf 699789987117887543
No 143
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.13 E-value=8.7e-05 Score=54.44 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=93.4
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHCC
Q ss_conf 44403664056404779999998622365699997389551562789999886236985799758899999-----9668
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLKN 295 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~g 295 (520)
..+||++|.|||.|+||+-..|..- |-.++|+++|.|=-.--|.+.+.+-=.+..-....++|+.+.|.+ .++.
T Consensus 2 ~~kkVvLAySGGLDTSv~l~wL~e~-g~~Vi~~~ad~G~~~~e~~~~i~~kA~~~GA~~~~v~D~~~ef~~~~v~~~i~a 80 (397)
T PRK04527 2 STKDIVLAFSGGLDTSFCIPYLQER-GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPFVWA 80 (397)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9875999908972899999999875-994799999789986151578999999819977999728999999999999860
Q ss_pred CCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHH
Q ss_conf 988899-------9988756589999999974399709986462202454202467776303443023201132032022
Q gi|254780414|r 296 IVDPET-------KRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLV 368 (520)
Q Consensus 296 v~DPE~-------KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~li 368 (520)
-.-.|. -|-.|.+.-+++ |++. ++..++-|- +|+..+-+.=.-..-.|+ .++++
T Consensus 81 na~Yeg~YpL~tsaRplIak~~ve~----A~~~-ga~~iaHG~-----------TGkGNDQvRFe~~~~al~---~~~vi 141 (397)
T PRK04527 81 GEGYQGQYPLLVSDRYLIVDAALKR----AEEL-GTRIIAHGC-----------TGMGNDQVRFDLAVKALG---DYQIV 141 (397)
T ss_pred CHHHCCCCCCCCCHHHHHHHHHHHH----HHHC-CCEEEECCC-----------CCCCCCHHHHHHHHHHCC---CCCCC
T ss_conf 6454185556321079999999999----9972-983840476-----------667870256776888636---76543
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
Q ss_conf 378987389999999981999889426888983
Q gi|254780414|r 369 EPLKELFKDEVRLLGKELRLPDSFVERHPCPGP 401 (520)
Q Consensus 369 EPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGP 401 (520)
-|.|+...+.- .+|.--+ +....|.||=|
T Consensus 142 AP~R~~~~~~~--~~R~~~~--~ya~~~gipv~ 170 (397)
T PRK04527 142 APIREIQKEHT--QTRAYEQ--KYLEERGFGVR 170 (397)
T ss_pred CCHHHHHHCCH--HHHHHHH--HHHHHCCCCCC
T ss_conf 65565310222--0299999--76786499988
No 144
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.12 E-value=2e-05 Score=59.07 Aligned_cols=148 Identities=27% Similarity=0.336 Sum_probs=91.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHCC
Q ss_conf 44036640564047799999986223-65699997389551562789999886236985799758899999-----9668
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLKN 295 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~g 295 (520)
.+||++|.|||.|+||+...|..-.| +.++|+.+|.|- -..|.+.+.+.-. .+|....++|+.+.|.+ ++++
T Consensus 3 ~kKVvLAySGGLDTSv~l~wL~e~yg~~eVi~~~~d~Gq-~~e~~~~~~~kA~-~~G~~~~viD~r~ef~~~~i~paI~a 80 (395)
T PRK13820 3 KKKVVLAYSGGLDTSVCIPLLKEKYGYDEVITVAVDVGQ-PEEEIKEAEEKAK-KLGVKHYTIDAKEEFAKDYIFPAIKA 80 (395)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCC-CHHHHHHHHHHHH-HCCCCEEEEECHHHHHHHHHHHHHHC
T ss_conf 872999968984899999999985199869999998999-7677699999999-70994999816999999999999970
Q ss_pred CCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHH
Q ss_conf 98889-------99988756589999999974399709986462202454202467776303443023201132032022
Q gi|254780414|r 296 IVDPE-------TKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLV 368 (520)
Q Consensus 296 v~DPE-------~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~li 368 (520)
-.--| --|-.|.+.-+++ |++. +++.+|-|-- ..|+ +-+.-. +.- ....++++
T Consensus 81 na~YegYpL~tslaRplia~~~v~~----A~~~-ga~aiaHG~T----------GkGN-DQvRFe--~~~--~ap~~~ii 140 (395)
T PRK13820 81 NALYEGYPLGTALARPLIAKKIVEV----AKKE-GASAIAHGCT----------GKGN-DQLRFE--AVF--RATDLDVI 140 (395)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----HHHC-CCEEEEECCC----------CCCC-HHHHHH--HHH--HCCCCEEE
T ss_conf 8732673032410468999999999----9975-9829830777----------8987-099999--998--67898687
Q ss_pred HHHHHHH--HHHHHHHHHHHCCCHH
Q ss_conf 3789873--8999999998199988
Q gi|254780414|r 369 EPLKELF--KDEVRLLGKELRLPDS 391 (520)
Q Consensus 369 EPl~~l~--KdEVR~lg~~Lglp~~ 391 (520)
-|.|+.. ..|-.+-+++-|+|-.
T Consensus 141 aP~R~~~~~R~~~i~ya~~~gI~v~ 165 (395)
T PRK13820 141 APIRELNLTREWEIEYAKEHGIPVP 165 (395)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 2104533458999999998599888
No 145
>TIGR00342 TIGR00342 thiamine biosynthesis/tRNA modification protein ThiI; InterPro: IPR003720 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway . Almost all the proteins in this group have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0009228 thiamin biosynthetic process.
Probab=98.03 E-value=6.2e-06 Score=62.65 Aligned_cols=155 Identities=23% Similarity=0.324 Sum_probs=114.1
Q ss_pred C-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH-------CCCCCEEEEEHHHHHHHH
Q ss_conf 4-44036640564047799999986223656999973895515627899998862-------369857997588999999
Q gi|254780414|r 221 G-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG-------YPNFPLRVVDASERFIRK 292 (520)
Q Consensus 221 g-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~-------~~~~~l~~vda~~~Fl~~ 292 (520)
| .+||+|.||||.||-|||.|+=|= |=++..||.+|.=+..+++.+-++.+.. ...+.+..+|-.+. ...
T Consensus 184 G~~Gkvl~LlSGGiDSPVAaf~~m~R-Gc~V~~vhf~~~~~~~~~~~~kv~~la~~~~~~~~~~~~~l~~~~F~~~-~~~ 261 (391)
T TIGR00342 184 GTQGKVLALLSGGIDSPVAAFLAMKR-GCRVVAVHFFNEPAASEKAREKVERLANLLSLNETGGSVKLYVVDFTDV-QEE 261 (391)
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHH-HHH
T ss_conf 02536320411883516799999663-8779999732885524689999999999885400037999998543899-999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHH-HH
Q ss_conf 66898889999887565899999999743997099864622024542024677763034430232011320320223-78
Q gi|254780414|r 293 LKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVE-PL 371 (520)
Q Consensus 293 L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liE-Pl 371 (520)
|....++...==+.-+.|+++.++.+.+. ++.-|.-| ||=|-. .|.|++ |---.......-++- ||
T Consensus 262 ~~~~~~e~~~~v~~rR~M~~~A~~~ae~~-g~~A~VTG-------e~LGQV--ASQTL~---Nl~vI~~~~~~~iL~RPL 328 (391)
T TIGR00342 262 IIEIIPEKYTMVLCRRLMLKIASKVAEKE-GCLAIVTG-------ESLGQV--ASQTLE---NLRVIQAVVNTPILRRPL 328 (391)
T ss_pred HHHCCCCCCEEEEHHHHHHHHHHHHHHHC-CCCEEEEC-------CCCCCH--HHHHHH---HHHHHHHCCCCCEEECCC
T ss_conf 98418998788740667999999888860-99489976-------634203--777888---999997237874240775
Q ss_pred HHHHHHHHHHHHHHHCCCH
Q ss_conf 9873899999999819998
Q gi|254780414|r 372 KELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 372 ~~l~KdEVR~lg~~Lglp~ 390 (520)
=-+=|+|.-++++++|==+
T Consensus 329 Ig~DK~~Ii~~Ak~IgTye 347 (391)
T TIGR00342 329 IGMDKEEIIELAKEIGTYE 347 (391)
T ss_pred CCCCHHHHHHHHHHCCCEE
T ss_conf 5479789999974139621
No 146
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=59.43 Aligned_cols=169 Identities=24% Similarity=0.357 Sum_probs=106.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC--CCCH
Q ss_conf 44036640564047799999986223656999973895515627899998862369857997588999999668--9888
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKN--IVDP 299 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~g--v~DP 299 (520)
.+|+++.+|||-|||++|+...+- ++.++++++|=|-=-.-|-+-..+.- +.+|++.++||-+ |++++.| .||+
T Consensus 2 ~~kavvl~SGG~DStt~l~~a~~~-~~ev~alsfdYGQrh~~Ele~A~~ia-k~lgv~~~iid~~--~~~~~~~saLtd~ 77 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCLAWAKKE-GYEVHALTFDYGQRHRKELEAAKELA-KKLGVPHHIIDVD--LLGEIGGSALTDD 77 (222)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEEECCCCCHHHHHHHHHHH-HHCCCCEEEECHH--HHHHCCCCCCCCC
T ss_conf 834999916881389999999960-98899997507898689999999999-9819982895416--8753588867588
Q ss_pred H----HHH---HHHHHH--------HHHHHHHHHHHCCCCEEEEEC---C---CCCHH----HHHHCCCCCCCCEEEEEE
Q ss_conf 9----999---887565--------899999999743997099864---6---22024----542024677763034430
Q gi|254780414|r 300 E----TKR---KVIGQL--------FIEVFEEEAKKIGGAQFLGQG---T---LYPDV----IESISFFGGPSSIIKSHH 354 (520)
Q Consensus 300 E----~KR---kiIG~~--------Fi~vf~~~a~~~~~~~~L~QG---T---lypDv----IES~~~~~~~~~~IKsHH 354 (520)
+ +.+ ..|-.| |+-+---.|..++ +..+.-| | -|||- ||+-.. +++
T Consensus 78 ~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g-~~~I~~Gv~~~D~sgYPDcrpefi~a~~~------~~~--- 147 (222)
T COG0603 78 SIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALG-ADAIIIGVNEEDFSGYPDCRPEFIEALNE------ALN--- 147 (222)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCHHHHHHHHH------HHH---
T ss_conf 86366666666668644760660999999999998759-98599975321047899888899999999------998---
Q ss_pred CCCCHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC-CEEEEC
Q ss_conf 232011320320-223789873899999999819998894268889831-112210
Q gi|254780414|r 355 NVGGLPEHMDMK-LVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPG-LAIRCI 408 (520)
Q Consensus 355 Nvgglp~~~~~~-liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPG-LaiRi~ 408 (520)
|--...++ +.-||-+|-|.|.-++|.+||.|-+..|-===++++ ..=||.
T Consensus 148 ----l~~~~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SCY~g~~~~~CG~C~ 199 (222)
T COG0603 148 ----LGTEKGVRIIHAPLMELTKAEIVKLADELGVPLELTWSCYNGGEGDHCGECE 199 (222)
T ss_pred ----HHCCCCCCEEECCEEECCHHHHHHHHHHHCCCCHHCEEEECCCCCCCCCCCH
T ss_conf ----6255786177678331349999998888688510026776799988787777
No 147
>pfam00733 Asn_synthase Asparagine synthase. This family is always found associated with pfam00310. Members of this family catalyse the conversion of aspartate to asparagine.
Probab=98.01 E-value=5.9e-05 Score=55.67 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=59.0
Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHH-
Q ss_conf 99999997650-4440366405640477999999862236569999738955156278999988623698579975889-
Q gi|254780414|r 210 KEIVSRIKEQV-GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASE- 287 (520)
Q Consensus 210 ~~~i~~Ir~~v-g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~- 287 (520)
+...+.++.+. .|..|=+.||||+|||+.|+++++....++.|.-++..--..+|.......-+ +++++.+.++...
T Consensus 4 ~ll~~aV~~~l~sdvpig~~LSGGlDSs~ia~l~~~~~~~~i~~~s~~~~~~~~~E~~~a~~~a~-~~~~~~~~v~~~~~ 82 (195)
T pfam00733 4 ELLRDAVKRRLRADVPVGVLLSGGLDSSLIAALAARQSSPPLKTFSVGFEGSDYDEAPYAELVAD-HLGTDHHEIIVTEE 82 (195)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-HHCCCCEEEEECHH
T ss_conf 99999999983469836753067468999999999853899538955788899758999999996-51335178772559
Q ss_pred HHHHHHC
Q ss_conf 9999966
Q gi|254780414|r 288 RFIRKLK 294 (520)
Q Consensus 288 ~Fl~~L~ 294 (520)
.|++.+.
T Consensus 83 ~~~~~~~ 89 (195)
T pfam00733 83 ELLDALP 89 (195)
T ss_pred HHHHHHH
T ss_conf 9999988
No 148
>pfam00764 Arginosuc_synth Arginosuccinate synthase. This family contains a PP-loop motif.
Probab=97.93 E-value=0.00015 Score=52.71 Aligned_cols=98 Identities=28% Similarity=0.346 Sum_probs=72.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHCCCCCHH
Q ss_conf 664056404779999998622365699997389551562789999886236985799758899999-----966898889
Q gi|254780414|r 226 ICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLKNIVDPE 300 (520)
Q Consensus 226 i~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~gv~DPE 300 (520)
++|-|||.|+||+...|.+- |..++|+.+|.|- -..+.+.+.+.-.+..-....++|+.+.|.+ ++++-.--|
T Consensus 1 VLAySGGLDTSv~l~wL~e~-~~eVia~~~d~Gq-~~ed~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~p~i~ana~Ye 78 (389)
T pfam00764 1 VLAYSGGLDTSVCIPWLKEK-YYEVIAVAVDVGQ-GEEDLDEAREKALKLGAVKHYVIDAKEEFVEDYIFPAIKANALYE 78 (389)
T ss_pred CEEECCCCHHHHHHHHHHHC-CCEEEEEEEECCC-CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 96036762899999999970-9928999997999-778789999999982997899973799999998999996686744
Q ss_pred H--------HHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9--------99887565899999999743997099864
Q gi|254780414|r 301 T--------KRKVIGQLFIEVFEEEAKKIGGAQFLGQG 330 (520)
Q Consensus 301 ~--------KRkiIG~~Fi~vf~~~a~~~~~~~~L~QG 330 (520)
- -|-.|.+.-+++ |++. +++.+|-|
T Consensus 79 g~Y~L~tslaRplia~~~v~~----A~~~-ga~aiaHG 111 (389)
T pfam00764 79 GRYPLGTALARPLIAKKLVEA----AKKE-GADAVAHG 111 (389)
T ss_pred CCEEECCCCHHHHHHHHHHHH----HHHC-CCEEEEEC
T ss_conf 647852432166999999999----8763-97699436
No 149
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.92 E-value=0.0002 Score=51.80 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=6.5
Q ss_pred CEEEECCCCC
Q ss_conf 7999985388
Q gi|254780414|r 52 QAIILSGSPA 61 (520)
Q Consensus 52 ~GIILSGGP~ 61 (520)
+-||+-|||.
T Consensus 433 ~~vi~lGG~t 442 (1294)
T PRK05297 433 AKLIVLGGPA 442 (1294)
T ss_pred CEEEEECCCC
T ss_conf 9999978965
No 150
>PRK05370 argininosuccinate synthase; Validated
Probab=97.90 E-value=8.5e-05 Score=54.50 Aligned_cols=148 Identities=20% Similarity=0.306 Sum_probs=91.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHH----HC---
Q ss_conf 44036640564047799999986223656999973895515627899998862369857997588999999----66---
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRK----LK--- 294 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~----L~--- 294 (520)
.+||++|.|||.|+||+-..|..- |-.++|+.+|.|---..+.+.+.+-=.+..-.+..++|+.+.|.+. |+
T Consensus 11 gkKVvLAYSGGLDTSv~l~wL~e~-g~eVia~taDvGQ~de~d~~~i~~kA~~~GA~k~~v~D~reefv~~~i~ai~a~A 89 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGA 89 (447)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHC-CCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 888999958982799999999875-9879999997999861338999999998299789997179999999999997362
Q ss_pred ------CC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHC
Q ss_conf ------89----88899998875658999999997439970998646220245420246777630344302320113203
Q gi|254780414|r 295 ------NI----VDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMD 364 (520)
Q Consensus 295 ------gv----~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~ 364 (520)
|. +-|= -|-+|...-+++ |++. +++..|.|--. .|+.. +.= -+.+.--.=.
T Consensus 90 ~y~~~~g~~Y~l~t~l-aRplia~~lv~~----a~~~-ga~~iaHGaTG----------KGNDQ-VRF--e~~~~~l~P~ 150 (447)
T PRK05370 90 FHISTGGVTYFNTTPL-GRAVTGTMLVAA----MKED-GVNIWGDGSTY----------KGNDI-ERF--YRYGLLTNPE 150 (447)
T ss_pred HHHHCCCCCCCCCCCH-HHHHHHHHHHHH----HHHH-CCCEEEECCCC----------CCCCH-HHH--HHHHHHHCCC
T ss_conf 3330257644587730-788999999999----9983-99899557767----------87438-899--9999852998
Q ss_pred CCHHHHHHHHH-------HHHHHHHHHHHCCC
Q ss_conf 20223789873-------89999999981999
Q gi|254780414|r 365 MKLVEPLKELF-------KDEVRLLGKELRLP 389 (520)
Q Consensus 365 ~~liEPl~~l~-------KdEVR~lg~~Lglp 389 (520)
++++-|-|+.- .+|--+-.++-|+|
T Consensus 151 lkIiaPwRd~~f~~el~sR~e~i~Ya~~~gIp 182 (447)
T PRK05370 151 LKIYKPWLDQDFIDELGGRAEMSEFMIACGFD 182 (447)
T ss_pred CEEECCCCCHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 76971433466665415749999999984998
No 151
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=97.83 E-value=0.0004 Score=49.69 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=69.1
Q ss_pred CHHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 01101244421123239831788986350011246521222152025779987550106441114067899999999765
Q gi|254780414|r 140 DQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQ 219 (520)
Q Consensus 140 D~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~ 219 (520)
..|.++|+|-.++-..++..+.. +..|-+.|.|....++ +...+.+.+...+.++.+
T Consensus 198 ~~I~~l~PG~~l~~~~~~~~~~~-----~~yw~~~~~~~~~~~~------------------~e~~~~~~~ll~~sV~~r 254 (628)
T TIGR03108 198 KGVKKLEPGHTLTLRRGAPPARP-----RCYWDVSFAPAAPLSE------------------ADALAELIERLREAVRSR 254 (628)
T ss_pred CCCEECCCCCEEEEECCCCCEEE-----EEECCCCCCCCCCCCH------------------HHHHHHHHHHHHHHHHHH
T ss_conf 57413189707999889871578-----7613676565679999------------------999999999999999998
Q ss_pred H-CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE--EEEEHHH
Q ss_conf 0-444036640564047799999986223656999973895515627899998862369857--9975889
Q gi|254780414|r 220 V-GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPL--RVVDASE 287 (520)
Q Consensus 220 v-g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l--~~vda~~ 287 (520)
. .|-.|=+.||||+|||..++++.+..++++.+.-|.-.--..+|.....+.- +++|.+- ..++..+
T Consensus 255 l~sDVpvG~~LSGGlDSS~I~a~~~~~~~~~i~tfsi~f~~~~~DE~~~A~~vA-~~~g~~h~~~~~~~~~ 324 (628)
T TIGR03108 255 MVADVPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDESAYARQVA-ERYGTNHRVETVDPDD 324 (628)
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHCCCCEEEECCHHH
T ss_conf 057885687646886368999999984299864366534888754369999999-8608764799779899
No 152
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.82 E-value=0.00014 Score=52.90 Aligned_cols=172 Identities=22% Similarity=0.196 Sum_probs=111.5
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf 99999765044403664056404779999998622365699997389551562789999886236985799758899999
Q gi|254780414|r 212 IVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR 291 (520)
Q Consensus 212 ~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~ 291 (520)
.+....+..++ .++.+.|||.||+|+..|+.|+..+ +.-+|+|||+.=. |..+-.+.+.+.+++++++....+.+..
T Consensus 30 i~~~~~~~~~~-~~~~~~S~Gkds~V~l~L~~k~~~~-~~vif~DTg~~f~-Et~~~~d~~~~~~~~~l~~~~~~~~~~~ 106 (261)
T COG0175 30 ILRWAAEEFSN-PVVVSFSGGKDSTVLLHLAAKAFPD-FPVIFLDTGYHFP-ETYEFRDRLAEEYGLDLKVYRPDDEVAE 106 (261)
T ss_pred HHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf 99999987489-7599812746799999999860258-7189970777578-8999999999872971798167323443
Q ss_pred H---HCCCCCHHHHHHHHHHHHHH---HHHHHHHHCCC-CEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHC
Q ss_conf 9---66898889999887565899---99999974399-70998646220245420246777630344302320113203
Q gi|254780414|r 292 K---LKNIVDPETKRKVIGQLFIE---VFEEEAKKIGG-AQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMD 364 (520)
Q Consensus 292 ~---L~gv~DPE~KRkiIG~~Fi~---vf~~~a~~~~~-~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~ 364 (520)
. ......|..-| .-+.+. =+.+..++.+. +++.++= -| ||.+.. .-.+-+ ..+..++.
T Consensus 107 ~~~~~~~~~~~~~~r---~c~~i~K~~pl~~al~~~~~~a~~~G~R---rd--es~~Ra---k~~~~~--~~~~~~~~-- 171 (261)
T COG0175 107 GEKYGGKLWEPSVER---WCCDIRKVEPLKRALDEYGFDAWFTGLR---RD--ESPTRA---KLPVVS--FDSEFGES-- 171 (261)
T ss_pred HHHCCCCCCCCCCCH---HHHHHHHHHHHHHHHHHCCCCEEEEECC---CC--CCCCCC---CCCEEC--CCCCCCCC--
T ss_conf 442136679997402---3325685513999996358624998612---04--563202---486453--46787683--
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf 20223789873899999999819998894268889831
Q gi|254780414|r 365 MKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPG 402 (520)
Q Consensus 365 ~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPG 402 (520)
--+-||.+---.||-.-=..-+||-+-++.+=|+-=|
T Consensus 172 -~rv~Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siG 208 (261)
T COG0175 172 -IRVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIG 208 (261)
T ss_pred -EEECCHHCCCHHHHHHHHHHHCCCCCCHHHCCCCCCC
T ss_conf -6871532099999999999958998841125888248
No 153
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=97.76 E-value=0.00016 Score=52.51 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=50.5
Q ss_pred EEEEECC--CCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCHHHH---HCCCC
Q ss_conf 9999889--70578899888865940698528989889972399799998538899999---9975376898---08998
Q gi|254780414|r 10 VLIIDFG--SQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI---DSPQIPKEIL---ESNIP 81 (520)
Q Consensus 10 IlIlDfG--SQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~---~ap~~~~~I~---~~~iP 81 (520)
|+|+.++ |.+|-+= .+.++-+|-.+.+.... . ..+++.|||.|+.+..-|- ....++.+|. +.+.|
T Consensus 1 iavi~lp~isNftDf~-~l~~~~~v~v~~v~~~~---~--l~~~D~iIlPGsK~t~~DL~~l~~~Gl~~~i~~~~~~g~~ 74 (194)
T cd01750 1 IAVIRYPDISNFTDLD-PLAREPGVDVRYVEVPE---G--LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGP 74 (194)
T ss_pred CEEEECCCCCCHHHHH-HHHCCCCCEEEEECCCC---C--CCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 9788269746645547-76006993899967977---6--4669999989988389999999874979999999975997
Q ss_pred EEEECHHHHHHHHHC
Q ss_conf 899778999989970
Q gi|254780414|r 82 LLGICYGQQIMCQSL 96 (520)
Q Consensus 82 ILGICyG~QlLa~~~ 96 (520)
|||||-|+|+|++.+
T Consensus 75 vlgICGGyQmLG~~i 89 (194)
T cd01750 75 VLGICGGYQMLGKYI 89 (194)
T ss_pred EEEECHHHHHHHCEE
T ss_conf 899736567300035
No 154
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.75 E-value=0.00024 Score=51.27 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=52.7
Q ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHH-HHHHHH
Q ss_conf 504440366405640477999999862236569999738955156278999988623698579975889-999996
Q gi|254780414|r 219 QVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASE-RFIRKL 293 (520)
Q Consensus 219 ~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~-~Fl~~L 293 (520)
...|.+|-+.||||+|||..|+++.+....++.+.-++.+.--.+|.+.....- ++++++.+.+.... .|.+.+
T Consensus 12 l~sd~~vg~~LSGGlDSs~ia~~~~~~~~~~~~~~s~~~~~~~~de~~~a~~va-~~~~~~~~~i~~~~~~~~~~~ 86 (269)
T cd01991 12 LRSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVA-EHLGTEHHEVEFTPADLLAAL 86 (269)
T ss_pred HCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHH-HHCCCCCEEEECCHHHHHHHH
T ss_conf 544885686513569999999999983689984799862899973789999999-980988245314348899999
No 155
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.71 E-value=0.00023 Score=51.38 Aligned_cols=162 Identities=20% Similarity=0.193 Sum_probs=85.2
Q ss_pred HHCCCCEEEEECCCCHHHHH---HHHHHHHCC---CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 50444036640564047799---999986223---656999973895515627899998862369857997588999999
Q gi|254780414|r 219 QVGNERVICAVSGGVDSTVA---AFLIYEAIG---INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRK 292 (520)
Q Consensus 219 ~vg~~kVi~~lSGGVDStV~---A~Ll~kAig---~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~ 292 (520)
+.|-++|++|||||+|||.| |+..-.|+| ++++||..= |+---+++.+=-..+.+.+|+++..++=++.+..-
T Consensus 359 k~g~~~vViGLSGGiDSaLaLLVaa~A~d~Lg~~r~~V~~vtMP-s~~TS~~S~~dA~~La~~LGi~~~~I~I~~a~~~~ 437 (678)
T PRK02628 359 ATGIKKVVIGISGGLDSTLALLVAAKAFDRLGLPRKNILAYTMP-GFGTTDRTKNNAVALMKALGVTAREIDIRPAALQM 437 (678)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHCEEEEECC-CCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 64998189967776447999999999999848971224899778-87657878999999999729977997629999999
Q ss_pred HCCCCCHHHHHH-H--HHHHHHHH------HHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 668988899998-8--75658999------99999743997099864622024542024677763034430232011320
Q gi|254780414|r 293 LKNIVDPETKRK-V--IGQLFIEV------FEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHM 363 (520)
Q Consensus 293 L~gv~DPE~KRk-i--IG~~Fi~v------f~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~ 363 (520)
++.+..|-.... . |-.+-|+- ....++ ..-+|+-|| -|.=|.+-+ =+.-|+| +|
T Consensus 438 ~~di~~~~~~~~~~~Dvt~ENiQAR~R~~iLM~laN---k~g~LVL~T--GNkSElAvG--------y~Ty~yG----D~ 500 (678)
T PRK02628 438 LKDIGHPFARGEKVYDVTFENVQAGERTQILFRLAN---QRGGLVIGT--GDLSELALG--------WCTYGVG----DH 500 (678)
T ss_pred HHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEC--CCCCHHHHC--------EECCCCC----CC
T ss_conf 998444222378776602665203556789999745---779679736--851468648--------3104775----41
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHCCCCCC
Q ss_conf 320223789873899999999819-----------998894268889
Q gi|254780414|r 364 DMKLVEPLKELFKDEVRLLGKELR-----------LPDSFVERHPCP 399 (520)
Q Consensus 364 ~~~liEPl~~l~KdEVR~lg~~Lg-----------lp~~~~~RhPFP 399 (520)
. --.-|++++.|-.||.|.+.+. ++.+++...|=|
T Consensus 501 m-g~yavn~~VpKTlV~~L~r~~a~~~~~~~~~~~vl~~Il~tpiSp 546 (678)
T PRK02628 501 M-SHYNVNASVPKTLIQHLIRWVAESGQFDEAVSEVLLDILDTPISP 546 (678)
T ss_pred C-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
T ss_conf 2-462446788378999999999862444531125689854699991
No 156
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=97.66 E-value=0.00033 Score=50.29 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=84.4
Q ss_pred HC-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEEEHHHHHHHHHCCCC
Q ss_conf 04-44036640564047799999986223656999973895515627899998862-36985799758899999966898
Q gi|254780414|r 220 VG-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG-YPNFPLRVVDASERFIRKLKNIV 297 (520)
Q Consensus 220 vg-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~-~~~~~l~~vda~~~Fl~~L~gv~ 297 (520)
+| .+||++.+|||. |.|||.++-|= |-+++++|.++|=--..-..++.+.+++ ..+.++..+-..
T Consensus 176 vGs~Gk~l~LlSGGi-SPVAa~~mmKR-G~~v~~vhf~~~~~~~~kv~~l~~~L~~y~~~~~~~~~~~~----------- 242 (310)
T PRK08384 176 IGTQGKMVGLLSDEL-SAVAIFLMMKR-GVEVIPVHIGMGEKNLEKVRKLWNQLKKYSYGSKGRLVVVK----------- 242 (310)
T ss_pred CCCCCCEEEEECCCC-CHHHHHHHHHC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC-----------
T ss_conf 467884899953886-39999999856-98799998568878999999999999986799846999966-----------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHH
Q ss_conf 88999988756589999999974399709986462202454202467776303443023201132032022378987389
Q gi|254780414|r 298 DPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKD 377 (520)
Q Consensus 298 DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~Kd 377 (520)
|. +..++.|+++ ++.=|.-| ||-+... |.|+. |..-.-....+-++-||--+=|+
T Consensus 243 -~~-----------~~a~~ia~~~-~~~alvTG-------EsLGQVA--SQTl~---nl~~i~~~~~~PVlRPLIg~DK~ 297 (310)
T PRK08384 243 -NF-----------ERVNKIIRDF-GAKGVVKG-------LRPEQLA--SETLE---NIYEDSRMFDVPVYYPLIALPDE 297 (310)
T ss_pred -HH-----------HHHHHHHHHH-CCCEEEEC-------CCHHHHH--HHHHH---HHHHHHHCCCCCCCCCCCCCCHH
T ss_conf -59-----------9999999985-99899977-------4125545--45798---89999730488730385689989
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998199
Q gi|254780414|r 378 EVRLLGKELRL 388 (520)
Q Consensus 378 EVR~lg~~Lgl 388 (520)
|.-++++++|.
T Consensus 298 EII~~Ar~IGT 308 (310)
T PRK08384 298 YIEKVKEKIGT 308 (310)
T ss_pred HHHHHHHHCCC
T ss_conf 99999986388
No 157
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=97.63 E-value=0.0014 Score=45.84 Aligned_cols=101 Identities=30% Similarity=0.342 Sum_probs=71.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHCCCCCH
Q ss_conf 3664056404779999998622365699997389551562789999886236985799758899999-----96689888
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLKNIVDP 299 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~gv~DP 299 (520)
|++|-|||.|+||+-..|.+--+-.++|+.+|.|--- .+.+.+.+-=.+..-.+..++|+++.|.+ ++++-.--
T Consensus 1 VvLAySGGLDTSv~l~wL~e~~~~eVia~~~d~Gq~~-e~~~~i~~kA~~~GA~~~~v~D~r~ef~~~~i~pai~ana~Y 79 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALY 79 (385)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCEEEEEEEECCCCH-HHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCC
T ss_conf 9799778817999999999745984999999899966-777899999998199789996129999999999999608643
Q ss_pred HH--------HHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99--------998875658999999997439970998646
Q gi|254780414|r 300 ET--------KRKVIGQLFIEVFEEEAKKIGGAQFLGQGT 331 (520)
Q Consensus 300 E~--------KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT 331 (520)
|. -|-.|.+.-+++ |++. ++..+|-|-
T Consensus 80 eg~Y~L~tslaRplIak~~ve~----A~~~-ga~aiaHG~ 114 (385)
T cd01999 80 EGTYPLGTALARPLIAKALVEV----AKEE-GADAVAHGC 114 (385)
T ss_pred CCCEECCCCHHHHHHHHHHHHH----HHHH-CCEEEEECC
T ss_conf 3753213501578999999999----9980-984997456
No 158
>pfam07685 GATase_3 CobB/CobQ-like glutamine amidotransferase domain.
Probab=97.63 E-value=0.00018 Score=52.11 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=34.4
Q ss_pred CCCCEEEECCCCCCCCCCC---CCCCCHHH---HHCCCCEEEECHHHHHHHHHC
Q ss_conf 3997999985388999999---97537689---808998899778999989970
Q gi|254780414|r 49 QNPQAIILSGSPASSLDID---SPQIPKEI---LESNIPLLGICYGQQIMCQSL 96 (520)
Q Consensus 49 ~~p~GIILSGGP~SV~d~~---ap~~~~~I---~~~~iPILGICyG~QlLa~~~ 96 (520)
.++++|||.||-...++.. ...+..+| .+.+.||||||-|+|+|+..+
T Consensus 6 ~~~D~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~G~pi~giCGG~q~Lg~~i 59 (158)
T pfam07685 6 GDADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPILGICGGYQMLGETI 59 (158)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECHHHHHHHHHH
T ss_conf 998799989954099999998775579999999977996999875889876550
No 159
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.62 E-value=0.00019 Score=52.05 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=60.1
Q ss_pred EEEEECCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHH
Q ss_conf 366405640477999999862--236569999738955156278999988623698579975889999996689888999
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEA--IGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETK 302 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kA--ig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~K 302 (520)
+++++|||.||++++.++++. -+.++..+.++
T Consensus 1 ilv~~Sgg~dS~~~~~la~~~~~~~~~~~~~~~~---------------------------------------------- 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV---------------------------------------------- 34 (86)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHH----------------------------------------------
T ss_conf 9788617853899999999852599808976389----------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHH
Q ss_conf 98875658999999997439970998646220245420246777630344302320113203202237
Q gi|254780414|r 303 RKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEP 370 (520)
Q Consensus 303 RkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEP 370 (520)
.|.+...+.+.+. +++++.+|+-++|+.+...... +|+...++.....++.|
T Consensus 35 ------~~~~~~~~~~~~~-~~~~i~~G~~~~~~~~~~~~~~---------~~~~~~~~~~~~~vl~p 86 (86)
T cd01984 35 ------AFVRILKRLAAEE-GADVIILGHNADDVAGRRLGAS---------ANVLVVIKGAGIPVLTP 86 (86)
T ss_pred ------HHHHHHHHHHHHC-CCCEEEECCCCHHHHHHCCCCC---------CCEEEEEECCCCCCCCC
T ss_conf ------9999999987760-8988998677324533101665---------54899981688643187
No 160
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.59 E-value=0.0013 Score=46.11 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCC---CCCCC---HHHHHCCCCEEEECHHHHH
Q ss_conf 05788998888659406985289898899723997999985388999999---97537---6898089988997789999
Q gi|254780414|r 18 QFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID---SPQIP---KEILESNIPLLGICYGQQI 91 (520)
Q Consensus 18 QytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~---ap~~~---~~I~~~~iPILGICyG~Ql 91 (520)
-|...+ +.+|++|+ |+++++--.++ ..-+.+|++|.||-=-.|.+. .-... ++..+.+.||++.|=|||.
T Consensus 12 yY~enl-~~L~~~Ga--elv~FSPl~d~-~lP~~d~lylgGGyPE~~a~~Ls~N~~~~~~ir~~~~~G~PiyAECGGlMy 87 (198)
T cd03130 12 YYPENL-ELLEAAGA--ELVPFSPLKDE-ELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMY 87 (198)
T ss_pred ECHHHH-HHHHHCCC--EEEEECCCCCC-CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 579999-99998899--78987776788-899876898279987588999976799999999999849977998204888
Q ss_pred HHHHCCC--------------EEEECCCCCCCEEEEEECCCCCCCCC-CCCCCCCEEEEEECCCHHHCCCC---CCCEEE
Q ss_conf 8997096--------------99986986610366752388622278-72665533686002201101244---421123
Q gi|254780414|r 92 MCQSLGG--------------KTKNSQSREFGRAFIEIKKNCSLLKG-MWEKGSKQQVWMSHGDQVEHIPE---GFEVIA 153 (520)
Q Consensus 92 La~~~GG--------------~V~~~~~~EyG~~~I~i~~~~~lf~g-l~~~~~~~~VwmSH~D~V~~lP~---gf~viA 153 (520)
|+..+-+ ++...++.-+|...+....+++++.. ..-..-.+ |.-.++..++ -+++.-
T Consensus 88 L~~~i~~~~G~~~~M~Gllp~~~~m~~rl~lGY~~~~~~~~~~~~~~g~~lrGHEF-----HyS~~~~~~~~~~~~~~~~ 162 (198)
T cd03130 88 LGESLDDEEGQSYPMAGVLPGDARMTKRLGLGYREAEALGDTLLGKKGTTLRGHEF-----HYSRLEPPPEPDFAATVRR 162 (198)
T ss_pred HHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEEE-----EEEEEECCCCCCCEEEEEE
T ss_conf 74220558998975021151688977763256389998278622379968887775-----5104031898752079981
Q ss_pred CC-CCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHH
Q ss_conf 23-98317889863500112465212221520257799875
Q gi|254780414|r 154 SS-DSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 (520)
Q Consensus 154 ~S-~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl 193 (520)
.. .+..-+++.. ++++|-..|-=-. .-.++.+||+
T Consensus 163 ~~g~~~~~~G~~~--~n~~asY~H~h~~---~~p~~~~~fv 198 (198)
T cd03130 163 GRGIDGGEDGYVY--GNVLASYLHLHWA---SNPDLAERFV 198 (198)
T ss_pred CCCCCCCCCEEEE--CCEEEEEEEECCC---CCHHHHHHHC
T ss_conf 5699888278998--9999998786787---3957999659
No 161
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=97.47 E-value=0.0014 Score=45.89 Aligned_cols=90 Identities=19% Similarity=0.176 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCCCCE---EEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999997650-444036640564047799999986223656---9999738955156278999988623698579975
Q gi|254780414|r 209 HKEIVSRIKEQV-GNERVICAVSGGVDSTVAAFLIYEAIGINL---TCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVD 284 (520)
Q Consensus 209 ~~~~i~~Ir~~v-g~~kVi~~lSGGVDStV~A~Ll~kAig~~l---~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vd 284 (520)
.+...+.++.+. .|-.|=+.||||+|||+.++++.+.-.+++ ++.|-|.+--+.+|.+.....-+ +++.+.+.+.
T Consensus 246 ~~~l~~sV~~rl~sDvpvg~~LSGGlDSS~i~a~~~~~~~~~i~tfs~~f~~~~~~~~dE~~~a~~va~-~~~~~h~~~~ 324 (589)
T TIGR03104 246 LEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEFEYSDIIAE-RFHTRHHKIR 324 (589)
T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH-HHCCCCEEEE
T ss_conf 999999999997446763000178754389999999956999852788724688776667999999999-7387857999
Q ss_pred H-HHHHHHH----HCCCCCH
Q ss_conf 8-8999999----6689888
Q gi|254780414|r 285 A-SERFIRK----LKNIVDP 299 (520)
Q Consensus 285 a-~~~Fl~~----L~gv~DP 299 (520)
- .+.|++. +.-..+|
T Consensus 325 ~~~~~~~~~l~~~~~~~deP 344 (589)
T TIGR03104 325 IPNHRVLPALPEAVAAMSEP 344 (589)
T ss_pred ECCHHHHHHHHHHHHCCCCC
T ss_conf 57178999889988526898
No 162
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.45 E-value=0.0025 Score=44.08 Aligned_cols=194 Identities=20% Similarity=0.297 Sum_probs=95.8
Q ss_pred ECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCHHHHHCCCCEEEECHHHHH
Q ss_conf 889705788998888659406985289898899723997999985388999999--975376898089988997789999
Q gi|254780414|r 14 DFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID--SPQIPKEILESNIPLLGICYGQQI 91 (520)
Q Consensus 14 DfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~--ap~~~~~I~~~~iPILGICyG~Ql 91 (520)
|||.-=|++| .|.| ..+++ +.+++|+.||. .-+.+ .+.+.++|.+.+-+|+|||-|+|+
T Consensus 18 ~FG~LPTkii----~enn-----------~k~ik--dLD~lIIPGGS--lvEs~sl~~elk~eI~~f~~~IiGICsGFQi 78 (482)
T PRK06278 18 NFGNLPTKII----KENN-----------IKAIK--DLDMLIIPGGS--IVESGSLTDELKKEILDFDNYILGICSGFQI 78 (482)
T ss_pred HCCCCCHHHH----CCCC-----------HHHHH--CCCEEEECCCC--EEECCCCCHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 2167863664----4367-----------22353--07579965973--5733775778999998627858996116788
Q ss_pred HHHHCC-CEEEECCC-CC-CCEEEEEEC------------CCCCCCCCCCCCCCCEEEEEECCCHHHC-CCCCCCEEECC
Q ss_conf 899709-69998698-66-103667523------------8862227872665533686002201101-24442112323
Q gi|254780414|r 92 MCQSLG-GKTKNSQS-RE-FGRAFIEIK------------KNCSLLKGMWEKGSKQQVWMSHGDQVEH-IPEGFEVIASS 155 (520)
Q Consensus 92 La~~~G-G~V~~~~~-~E-yG~~~I~i~------------~~~~lf~gl~~~~~~~~VwmSH~D~V~~-lP~gf~viA~S 155 (520)
|+..-. |+-.+.+. +| -|.-+++.. .++.+|.+-......+++ |.+.=.+ .+...+.+..|
T Consensus 79 L~~kiDIGRKS~vPIikeGLGLLdV~fsPlictDrV~f~i~~~~~~~~~~~~~~GFHC---HTYG~Iei~~~~tk~lt~S 155 (482)
T PRK06278 79 LAEKIDIGRKSPVPIIKEGLGLLNVEFSPLICTDRVKFNIENDSFFGEKNESGTGFHC---HTYGNIEITNNSTKKLTYS 155 (482)
T ss_pred HHHHCCCCCCCCCCEEECCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCEEEEEE---ECCCCEEECCCCCCEEEHH
T ss_conf 7764376667999741004552014661136515156897514003555773312553---1014378427887522465
Q ss_pred C-----------CCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH----
Q ss_conf 9-----------8317889863500112465212221520257799875501064411140678999999997650----
Q gi|254780414|r 156 D-----------STPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQV---- 220 (520)
Q Consensus 156 ~-----------~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~v---- 220 (520)
. ...+.+.. +.++||++-|-=.. -..+-.||+ +.-+++.+=.- .+-+.-+.||+++
T Consensus 156 ~i~klNYk~~~~~~IlSG~~--kgkV~GTmVHn~LD----n~~v~~N~l-~~l~~~e~e~e--eIf~kNk~lk~~lk~~~ 226 (482)
T PRK06278 156 KIQKLNYKMVGKQNILSGVF--KGNVYGTMVHNLLD----NNFVVNNIL-KYLDITEEEKE--EIFKKNKILKEKLKSES 226 (482)
T ss_pred HHHHHCCCCCCCCEEEEEEC--CCCCHHHHHHHHCC----HHHHHHHHH-HHCCCCHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 54340234367640552001--68461454555424----288999999-87288778899--99987699999998873
Q ss_pred ---------------CCCCEEEEECCCCHHHHH
Q ss_conf ---------------444036640564047799
Q gi|254780414|r 221 ---------------GNERVICAVSGGVDSTVA 238 (520)
Q Consensus 221 ---------------g~~kVi~~lSGGVDStV~ 238 (520)
+.++-|..+|-|-||--+
T Consensus 227 ~i~~~~~~~~~~k~~~~kkgiiLl~TgS~SGKT 259 (482)
T PRK06278 227 KISTNNKKIDRNKNPEVKKGIILLATGSESGKT 259 (482)
T ss_pred CCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCE
T ss_conf 666674023304788899659998437877743
No 163
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.0032 Score=43.27 Aligned_cols=154 Identities=23% Similarity=0.299 Sum_probs=97.9
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHCC
Q ss_conf 44403664056404779999998622365699997389551562789999886236985799758899999-----9668
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLKN 295 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~g 295 (520)
..+||++|-|||.|-|||-..|..-.|..++++.+|-|-= ..|.+.+.+-=.+....+..++|+.+.|-+ .+++
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e~~~~eVit~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeFv~~yi~~~i~a 81 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKA 81 (403)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCC-HHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 7767999954882399999999976594699999758997-577579999999818852899643899999999999973
Q ss_pred CCCHHH--------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCH
Q ss_conf 988899--------998875658999999997439970998646220245420246777630344302320113203202
Q gi|254780414|r 296 IVDPET--------KRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKL 367 (520)
Q Consensus 296 v~DPE~--------KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~l 367 (520)
-.-.|- -|-.|++.-+++.++ . ++..+|-|-- ..|+.. ..= -++..--.-.+++
T Consensus 82 na~Yeg~YpL~TalaRPLIak~lVe~A~k----~-Ga~avaHGcT----------GKGNDQ-vRF--E~~~~al~pdlki 143 (403)
T COG0137 82 NALYEGVYPLGTALARPLIAKKLVEAAKK----E-GADAVAHGCT----------GKGNDQ-VRF--ELAILALNPDLKI 143 (403)
T ss_pred HCEEECCCCCCCHHHHHHHHHHHHHHHHH----C-CCCEEEECCC----------CCCCCE-EEE--EEEHHHHCCCCEE
T ss_conf 05121564145434677999999999997----1-9969974678----------888753-543--2004541899679
Q ss_pred HHHHHHH--HHHHHHHHHHHHCCCHHHH
Q ss_conf 2378987--3899999999819998894
Q gi|254780414|r 368 VEPLKEL--FKDEVRLLGKELRLPDSFV 393 (520)
Q Consensus 368 iEPl~~l--~KdEVR~lg~~Lglp~~~~ 393 (520)
+-|-|+. -..|--+-+++-|+|-..-
T Consensus 144 iAP~Rew~~~R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 144 IAPWREWNLTREEEIEYAEEHGIPVKAT 171 (403)
T ss_pred EEEHHHHCCCHHHHHHHHHHCCCCCCCC
T ss_conf 8563341337699999999849976656
No 164
>TIGR01001 metA homoserine O-succinyltransferase; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase (2.3.1.46 from EC), catalyses the first step in the biosynthesis of methionine. Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine. ; GO: 0008415 acyltransferase activity, 0019281 methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm.
Probab=97.43 E-value=0.0008 Score=47.55 Aligned_cols=146 Identities=25% Similarity=0.335 Sum_probs=92.2
Q ss_pred CHHHHHHCCCCEEEECCCCCCCCC--CCCCCC-CHHHHH---CCC-CEEEECHHHHHHHHHCCCEEE-ECCCCCCCEEEE
Q ss_conf 988997239979999853889999--999753-768980---899-889977899998997096999-869866103667
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGSPASSLD--IDSPQI-PKEILE---SNI-PLLGICYGQQIMCQSLGGKTK-NSQSREFGRAFI 113 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGGP~SV~d--~~ap~~-~~~I~~---~~i-PILGICyG~QlLa~~~GG~V~-~~~~~EyG~~~I 113 (520)
.++++++.+.||+|++|-|-.--+ +-+.|- -.+|++ .+| -.|=||+|.|.=-..|=|-=+ .-..+=.|.-.-
T Consensus 91 ~fe~vk~~~FDG~IvTGAP~el~~Fe~VaYW~~l~~i~~w~k~~VtStlyiCWaaqAaL~~lYg~pK~~~~~KlsGVY~H 170 (305)
T TIGR01001 91 TFEEVKDRKFDGLIVTGAPVELVDFEDVAYWEELKEIMEWSKQNVTSTLYICWAAQAALKYLYGIPKITLDEKLSGVYKH 170 (305)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
T ss_conf 47888512788158847762446644322368999999987506705204778999999987178732223220002443
Q ss_pred EEC-CCCCCCCCCCCCCCCEEEEEECC-------CHHHCCC--CCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCC
Q ss_conf 523-88622278726655336860022-------0110124--4421123239831788986350011246521222152
Q gi|254780414|r 114 EIK-KNCSLLKGMWEKGSKQQVWMSHG-------DQVEHIP--EGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTV 183 (520)
Q Consensus 114 ~i~-~~~~lf~gl~~~~~~~~VwmSH~-------D~V~~lP--~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~ 183 (520)
.+. +.+.|+.|+ .-.+||=|+ ..+.+++ .+++++|.|+..-+=.+..++++..=|--|||-.-
T Consensus 171 ~~~~~~~~L~rg~-----Dd~flaPHSRy~~~~~e~i~~~~kqG~L~ILa~~~~~gvY~~a~kd~r~iFvtGHpEYd~-- 243 (305)
T TIGR01001 171 DIVKPDDLLLRGF-----DDKFLAPHSRYADFDAEQILELTKQGDLEILAESDEAGVYLAALKDERNIFVTGHPEYDA-- 243 (305)
T ss_pred EEECCCCCCCCCC-----CCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCHHHH--
T ss_conf 2226734332268-----711117747766776899985014564000001254567898623664588846823677--
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0257799875501
Q gi|254780414|r 184 GGSQLIDNFVHHV 196 (520)
Q Consensus 184 ~G~~iL~NFl~~I 196 (520)
.++-.-|+.++
T Consensus 244 --~TL~~EY~RD~ 254 (305)
T TIGR01001 244 --YTLHQEYVRDV 254 (305)
T ss_pred --HHHHHCCEEEC
T ss_conf --76541221000
No 165
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.43 E-value=0.00076 Score=47.71 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=60.0
Q ss_pred CHHHHHHCCCCEEEECCCCCCCCC--CCCCCC-CHHHHH----CCCCEEEECHHHHHHHHHCCC-EEEECCCCCCCEEEE
Q ss_conf 988997239979999853889999--999753-768980----899889977899998997096-999869866103667
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGSPASSLD--IDSPQI-PKEILE----SNIPLLGICYGQQIMCQSLGG-KTKNSQSREFGRAFI 113 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGGP~SV~d--~~ap~~-~~~I~~----~~iPILGICyG~QlLa~~~GG-~V~~~~~~EyG~~~I 113 (520)
++++++..+++|+|++|-|-.-.+ +-..+- -.+|++ .-...|+||+|.|....++-| .-...+.+-+|...-
T Consensus 54 ~~~~i~~~~~DglIITGAPve~l~fe~v~YW~El~~i~dwa~~~v~stl~iCWaA~Aal~~~ygI~k~~l~~K~fGVf~h 133 (175)
T cd03131 54 TFDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFGVFPH 133 (175)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEECCCCEEEEECC
T ss_conf 49987417776689718998878834387799999999999873663345649999999998399840068734886413
Q ss_pred EECCCCCCCCCCCC
Q ss_conf 52388622278726
Q gi|254780414|r 114 EIKKNCSLLKGMWE 127 (520)
Q Consensus 114 ~i~~~~~lf~gl~~ 127 (520)
.+..+++++.|+.+
T Consensus 134 ~~~~~~pLl~g~~d 147 (175)
T cd03131 134 TILEPHPLLRGLDD 147 (175)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 46899904067898
No 166
>TIGR00032 argG argininosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate , . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process.
Probab=97.29 E-value=0.0013 Score=46.07 Aligned_cols=157 Identities=22% Similarity=0.343 Sum_probs=108.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-----HHC---
Q ss_conf 0366405640477999999862236-5699997389551562789999886236985799758899999-----966---
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-----KLK--- 294 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-----~L~--- 294 (520)
||.+|-|||+|-|||=.+|..--|- .++.+.+|=|==-..|.+++.+-=++....|-.+|||++.|-+ +++
T Consensus 1 KVvLAySGGLDTSv~l~wL~~kyG~~~Via~~~dvGQPDE~d~~~~~~kA~~~GA~~~~~iDak~eFv~dy~f~aiqanA 80 (420)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLEEKYGYEEVIAVTADVGQPDEEDIDAIEEKALKYGAEKHYTIDAKEEFVKDYLFAAIQANA 80 (420)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCC
T ss_conf 96888607025999999988652898607999756799988888899998873671025772368899999888765066
Q ss_pred ------CCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCC
Q ss_conf ------8988---8999988756589999999974399709986462202454202467776303443023201132032
Q gi|254780414|r 295 ------NIVD---PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDM 365 (520)
Q Consensus 295 ------gv~D---PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~ 365 (520)
|++= ---=|=.|++--++|.++ .++.=.|-|- +.+|+ +-+.= .+-++-..-.|
T Consensus 81 ~Ye~~GG~~Y~L~TaLaRPlIA~~lVe~Ak~-----~Ga~AvaHGC----------TGKGN-DQ~RF--e~~~~~~~p~L 142 (420)
T TIGR00032 81 VYEGTGGLVYPLSTALARPLIAKKLVEVAKK-----EGAEAVAHGC----------TGKGN-DQVRF--ERSIRALNPDL 142 (420)
T ss_pred EECCCCCEECCCCCCCHHHHHHHHHHHHHHH-----CCCEEEECCC----------CCCCC-CHHHH--HHHHHHHCCCC
T ss_conf 0317874103476611457999999999846-----6954987076----------87774-13576--58887526898
Q ss_pred CHHHHHHH--HH-----HHHHHHHHHHHCCCHHHHCCCCC
Q ss_conf 02237898--73-----89999999981999889426888
Q gi|254780414|r 366 KLVEPLKE--LF-----KDEVRLLGKELRLPDSFVERHPC 398 (520)
Q Consensus 366 ~liEPl~~--l~-----KdEVR~lg~~Lglp~~~~~RhPF 398 (520)
|++-|.|+ |+ -.|--+-+++-|+|-..-.--|+
T Consensus 143 kviaP~R~~~~~e~lgGR~e~~eYa~~~Gip~p~~~~K~Y 182 (420)
T TIGR00032 143 KVIAPWRDLNLTEELGGREEEIEYAAQKGIPVPMTKEKPY 182 (420)
T ss_pred EEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 5874734646776405948899999966888765467777
No 167
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=97.27 E-value=0.0019 Score=44.84 Aligned_cols=151 Identities=21% Similarity=0.217 Sum_probs=87.3
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CHHHHHHHHHHCCCCCEEEEEH--HHHHHHHH
Q ss_conf 76504440366405640477999999862236569999738955156-2789999886236985799758--89999996
Q gi|254780414|r 217 KEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKN-EVENIISLFKGYPNFPLRVVDA--SERFIRKL 293 (520)
Q Consensus 217 r~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRkn-E~~~v~~~~~~~~~~~l~~vda--~~~Fl~~L 293 (520)
|..+.+-|+..|.|||||||..|..+..| | +-||-|-++.- +-.+-.+.+...+|.-..++.+ ++.--.+|
T Consensus 55 r~~id~~kiaVA~SGG~DSsas~iilR~~-g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGal 128 (255)
T COG1365 55 RIKIDKPKIAVAYSGGVDSSASAIILRWA-G-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGAL 128 (255)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHH-C-----EEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 57888843899842786427889998862-1-----04146321387788678999989972577789989999986320
Q ss_pred CCCCCHHHHHHHHHHHHH---HHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHH-H
Q ss_conf 689888999988756589---999999974399709986462202454202467776303443023201132032022-3
Q gi|254780414|r 294 KNIVDPETKRKVIGQLFI---EVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLV-E 369 (520)
Q Consensus 294 ~gv~DPE~KRkiIG~~Fi---~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~li-E 369 (520)
.|---| .|+--- .-.++.|+++ ++++++-|-+.|- | ||.| -+++=-|++= -
T Consensus 129 nGRfhp------CGRCh~~I~~~V~~k~re~-di~~vafGDlLs~--------G--------~~sv--y~eD~i~rlnlP 183 (255)
T COG1365 129 NGRFHP------CGRCHSMIENAVMDKAREL-DIDVVAFGDLLST--------G--------YGSV--YREDGIFRLNLP 183 (255)
T ss_pred CCCCCC------CCHHHHHHHHHHHHHHHHC-CCEEEEECCCCCC--------C--------CCCE--ECCCCEEEECCH
T ss_conf 587787------5237899999999999853-8708997463234--------6--------6321--205887997258
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCC
Q ss_conf 78987389999999981999889426888
Q gi|254780414|r 370 PLKELFKDEVRLLGKELRLPDSFVERHPC 398 (520)
Q Consensus 370 Pl~~l~KdEVR~lg~~Lglp~~~~~RhPF 398 (520)
-+=-|-|||+|.+-..-|.--++-+--||
T Consensus 184 AflAltK~Elr~il~~~~~e~~~kygCPl 212 (255)
T COG1365 184 AFLALTKDELRSILKWNGYELEMKYGCPL 212 (255)
T ss_pred HHHHHCCHHHHHHHHHCCCCCHHCCCCCH
T ss_conf 88851719999998713843001158835
No 168
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.24 E-value=0.00029 Score=50.66 Aligned_cols=72 Identities=22% Similarity=0.401 Sum_probs=47.8
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHH--HHHCCCCEEEECCCCCCCCCCC-CCC---CCHHHHHCCCCEEEECHHHHHH
Q ss_conf 8899888865940698528989889--9723997999985388999999-975---3768980899889977899998
Q gi|254780414|r 21 QLIARRVRESKVYCEVIAFKNALDY--FKEQNPQAIILSGSPASSLDID-SPQ---IPKEILESNIPLLGICYGQQIM 92 (520)
Q Consensus 21 qLIaRriRelgVyseI~P~~~~~e~--i~~~~p~GIILSGGP~SV~d~~-ap~---~~~~I~~~~iPILGICyG~QlL 92 (520)
......+|+.++...+++....... ....+++++|+.||+....... ... .-.+....+.|++|+|.|+|++
T Consensus 15 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~d~liipgg~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCHHCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf 999999997799799996589986665762008999989986329998639999999999998699899988588999
No 169
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.19 E-value=0.0073 Score=40.70 Aligned_cols=193 Identities=17% Similarity=0.244 Sum_probs=88.7
Q ss_pred EEEEE--ECCCCHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC----CCCCCCHHHHH---C
Q ss_conf 69999--8897057889988886-5940698528989889972399799998538899999----99753768980---8
Q gi|254780414|r 9 KVLII--DFGSQFTQLIARRVRE-SKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI----DSPQIPKEILE---S 78 (520)
Q Consensus 9 ~IlIl--DfGSQytqLIaRriRe-lgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~----~ap~~~~~I~~---~ 78 (520)
+|+|+ +.+|.||-+= -++. -+|....++...++. +|+.|||-|+- |.+.+ ..-+++.++.+ .
T Consensus 253 ~Iav~~lp~isNFtD~d--pL~~~~~v~v~~v~~~~~l~-----~~dlvIlPGsk-~t~~DL~~lr~~g~d~~i~~~~~~ 324 (486)
T COG1492 253 RIAVIRLPRISNFTDFD--PLRAEPDVRVRFVKPGSDLR-----DADLVILPGSK-NTIADLKILREGGMDEKILEYARK 324 (486)
T ss_pred EEEEECCCCCCCCCCCH--HHHCCCCEEEEEECCCCCCC-----CCCEEEECCCC-CCHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 99996578755644521--46527980799961677789-----98889947985-608899999976979999999747
Q ss_pred CCCEEEECHHHHHHHHHCCC--EEEECCCCC---CCEEEEEECC----------CCCCCCCCCCCCCCEEEEEECCCHHH
Q ss_conf 99889977899998997096--999869866---1036675238----------86222787266553368600220110
Q gi|254780414|r 79 NIPLLGICYGQQIMCQSLGG--KTKNSQSRE---FGRAFIEIKK----------NCSLLKGMWEKGSKQQVWMSHGDQVE 143 (520)
Q Consensus 79 ~iPILGICyG~QlLa~~~GG--~V~~~~~~E---yG~~~I~i~~----------~~~lf~gl~~~~~~~~VwmSH~D~V~ 143 (520)
+.||+|||=|||+|...+-- .++... .+ .|.-.++..- ......+.+... +.+ |. .++
T Consensus 325 ~~~viGICGG~QmLG~~i~Dp~g~Eg~~-~~~~GLgLldv~T~~~~~K~~~~~~~~~~~~~~~~~G--yEI---H~-G~t 397 (486)
T COG1492 325 GGDVIGICGGYQMLGRRLKDPSGIEGAK-GEAEGLGLLDVETCFAGGKTTRVVTGALILSGLEVEG--YEI---HM-GIT 397 (486)
T ss_pred CCCEEEECCHHHHHHHHHCCCCCCCCCC-CCCCCCCCEEEEEEECCCCEEEEEEEEEECCCCCEEE--EEE---EE-EEE
T ss_conf 9979998635776433414864445763-4337856257888653883599974466047862046--899---87-797
Q ss_pred CCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1244421123239831788986350011246521222152025779987550106-4411140678999999997650
Q gi|254780414|r 144 HIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAG-IQDNWVMSSYHKEIVSRIKEQV 220 (520)
Q Consensus 144 ~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~-~~~~W~~~~~~~~~i~~Ir~~v 220 (520)
.-+++.......+...--+-...+.+++|.-+|== .......+.|+..+.. -...-......+..+..+.+.+
T Consensus 398 ~~~~~~~~~~~~~~~~~dG~i~~dg~v~gTy~HGi----f~n~~~~~~fl~~~~~~~~~~~~~~e~~~~~~d~~a~~v 471 (486)
T COG1492 398 NRVDDSRPFNRLGSGVEDGAISADGRVFGTYLHGI----FENDIFREAFLRELGEREDTGIEYREVRERALDRLADEV 471 (486)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 14455664213667655763346785888873374----666789999999972667665578999988899999999
No 170
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=97.13 E-value=0.0054 Score=41.61 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=59.5
Q ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCHHHHHHHHHHCCCCCE-EEEEHHHHHHHHHCCC-
Q ss_conf 04440366405640477999999862236569999-73895515627899998862369857-9975889999996689-
Q gi|254780414|r 220 VGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVL-VDHGFMRKNEVENIISLFKGYPNFPL-RVVDASERFIRKLKNI- 296 (520)
Q Consensus 220 vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vf-VD~GllRknE~~~v~~~~~~~~~~~l-~~vda~~~Fl~~L~gv- 296 (520)
+.|..|-+.||||||||+.|+++++....+..+-| |+-.-=.-.|.+-.....+. +|.+. .++=..+.++..+..+
T Consensus 228 ~advpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D~~~a~~~A~~-lg~~h~~~~~~~~e~~~~~~~vv 306 (542)
T COG0367 228 VADVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDAKYARAVAKF-LGTPHHEIILTNEELLNALPEVV 306 (542)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH-HCCCCEEEEECHHHHHHHHHHHH
T ss_conf 15887899967762299999999986234552158985489997079999999998-59985799617899999999999
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECC
Q ss_conf ---88899998875658999999997439-970998646
Q gi|254780414|r 297 ---VDPETKRKVIGQLFIEVFEEEAKKIG-GAQFLGQGT 331 (520)
Q Consensus 297 ---~DPE~KRkiIG~~Fi~vf~~~a~~~~-~~~~L~QGT 331 (520)
..|-. --++-.+.- ..+.+++.+ .+-+-+||-
T Consensus 307 ~~~~~p~~--~~~~~ply~-~~~~a~~~g~kVvLSGeGA 342 (542)
T COG0367 307 KALDTPGG--MAASIPLYL-LSRKARAEGEKVVLSGEGA 342 (542)
T ss_pred HHHCCCCC--CHHHHHHHH-HHHHHHHCCCEEEECCCCH
T ss_conf 87078862--004579999-9987653387898238748
No 171
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=97.08 E-value=0.0056 Score=41.53 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCC-------------CEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 6789999999976504-440366405640477999999862236-------------56999973895515627899998
Q gi|254780414|r 206 SSYHKEIVSRIKEQVG-NERVICAVSGGVDSTVAAFLIYEAIGI-------------NLTCVLVDHGFMRKNEVENIISL 271 (520)
Q Consensus 206 ~~~~~~~i~~Ir~~vg-~~kVi~~lSGGVDStV~A~Ll~kAig~-------------~l~~vfVD~GllRknE~~~v~~~ 271 (520)
+.+.+...+.+|.+.- |-.|=+.||||+|||..|+|..|.... ++++.-| |+=...|.....+
T Consensus 210 ~~lr~lL~~AV~~rL~sDvpvG~~LSGGLDSSlIaala~k~~~~~~~~~~~~~~~~~~l~tFsi--G~~~s~D~~~Ar~- 286 (555)
T PRK09431 210 NELREALEAAVKKRLMSDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAV--GLEGSPDLKAARE- 286 (555)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE--CCCCCCHHHHHHH-
T ss_conf 9999999999999835688624320577067999999998520244332222234678753660--4799814999999-
Q ss_pred HHHCCCCCEEEEE-HHHHHHHHHCCCC------CHHHHHHHHHHH
Q ss_conf 8623698579975-8899999966898------889999887565
Q gi|254780414|r 272 FKGYPNFPLRVVD-ASERFIRKLKNIV------DPETKRKVIGQL 309 (520)
Q Consensus 272 ~~~~~~~~l~~vd-a~~~Fl~~L~gv~------DPE~KRkiIG~~ 309 (520)
..+++|.+-+.+. ..+.+++.|..+. ||-.=|-.|+.-
T Consensus 287 vA~~lgt~h~ei~~t~~d~~~~l~~vi~~lE~~d~~~~~asip~y 331 (555)
T PRK09431 287 VADYLGTVHHEIHFTVQEGLDALRDVIYHLETYDVTTIRASTPMY 331 (555)
T ss_pred HHHHHCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999829956599954799999999999874146875025689999
No 172
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=97.07 E-value=0.029 Score=36.46 Aligned_cols=175 Identities=17% Similarity=0.213 Sum_probs=114.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 11140678999999997650444036640564047799999986223656999973895515627899998862369857
Q gi|254780414|r 201 DNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPL 280 (520)
Q Consensus 201 ~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l 280 (520)
.+.+++..++-.++ +.| ++++..-|-|.+|.|.--|+.++ +....-+|||||++=. |+-+..+.+.+++++|+
T Consensus 25 ~~~~p~eil~wa~~----~~~-~~~~~tsSFG~es~Vllhli~~~-~~~ipV~flDTG~~f~-ETy~~~d~l~~~~~l~i 97 (243)
T PRK02090 25 EKASAQERLAWALE----EFG-GGLALASSFGAESAVLLHLVAQV-DPDIPVIFLDTGYLFP-ETYRFIDQLTERLLLNL 97 (243)
T ss_pred HCCCHHHHHHHHHH----HCC-CCEEEEECCCHHHHHHHHHHHHH-CCCCCEEEEECCCCCH-HHHHHHHHHHHHHCCCE
T ss_conf 17999999999999----759-97699945867899999999941-9999679865798888-99999999999979977
Q ss_pred EEEEHHHH---HHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEE
Q ss_conf 99758899---9999668-----988899998875658999999997439970998646220245420246777630344
Q gi|254780414|r 281 RVVDASER---FIRKLKN-----IVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKS 352 (520)
Q Consensus 281 ~~vda~~~---Fl~~L~g-----v~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKs 352 (520)
+++..... ......| ++||++==.| .=++-|.+..+.+ ++|+-++ .-| || ........+ +
T Consensus 98 ~~~~P~~~~~~~~~~~g~l~~~~~~d~~~CC~i---rKvePL~raL~~~-daWitG~---Rr~--Qs--~~Ra~l~~v-e 165 (243)
T PRK02090 98 KVYRPDASAAEQEARYGGLWEQSVEDPDECCRI---RKVEPLNRALAGL-DAWITGL---RRE--QS--GTRAELPVL-E 165 (243)
T ss_pred EEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHH---HCCHHHHHHHHHC-CEEEECC---CHH--HC--HHHCCCCCE-E
T ss_conf 997788149999998299766763248987677---6502799986017-7587447---144--26--334258734-5
Q ss_pred EECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf 30232011320320223789873899999999819998894268889831
Q gi|254780414|r 353 HHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPG 402 (520)
Q Consensus 353 HHNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPG 402 (520)
. .+|+ +| +-||-+.-++||-.-=+.-+||.+=++.+=||-=|
T Consensus 166 ~--d~g~-----~K-vnPL~~Ws~~dv~~Yi~~~~LP~npL~~~GY~SIG 207 (243)
T PRK02090 166 I--DRGR-----FK-INPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIG 207 (243)
T ss_pred E--CCCE-----EE-ECCCHHCCHHHHHHHHHHCCCCCCCHHHCCCCCCC
T ss_conf 2--3998-----88-67001199999999999859998832445999858
No 173
>PRK00784 cobyric acid synthase; Provisional
Probab=97.06 E-value=0.01 Score=39.71 Aligned_cols=81 Identities=23% Similarity=0.380 Sum_probs=48.8
Q ss_pred EEEEEECC--CCHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCC---CCCCCHHH---HHCC
Q ss_conf 69999889--70578899888-8659406985289898899723997999985388999999---97537689---8089
Q gi|254780414|r 9 KVLIIDFG--SQFTQLIARRV-RESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID---SPQIPKEI---LESN 79 (520)
Q Consensus 9 ~IlIlDfG--SQytqLIaRri-RelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~---ap~~~~~I---~~~~ 79 (520)
+|+|+.+= |.||-. --+ .|-+|...-++. .+++ .+++.|||.|+-+.+.|-. .-.++.+| .+.+
T Consensus 255 ~IaVi~lP~iSNftDf--dpL~~e~~V~l~~v~~---~~~l--~~~D~vIlPGsK~Ti~DL~~Lr~~Gl~~~i~~~~~~G 327 (492)
T PRK00784 255 RVAVPRLPRISNFTDF--DPLRAEPGVDVRYVRP---GEPL--PDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRG 327 (492)
T ss_pred EEEEEECCCCCCCCCC--HHHHHCCCEEEEEECC---CCCC--CCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 8999806755686544--3564078728999789---7656--8999999799866489999999869499999999759
Q ss_pred CCEEEECHHHHHHHHHC
Q ss_conf 98899778999989970
Q gi|254780414|r 80 IPLLGICYGQQIMCQSL 96 (520)
Q Consensus 80 iPILGICyG~QlLa~~~ 96 (520)
.||+|||=|+|+|+...
T Consensus 328 ~~V~GICGGyQMLG~~I 344 (492)
T PRK00784 328 GPVLGICGGYQMLGRTI 344 (492)
T ss_pred CCEEEECCHHHHHCCEE
T ss_conf 97899870288630200
No 174
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=97.03 E-value=0.00025 Score=51.14 Aligned_cols=82 Identities=29% Similarity=0.567 Sum_probs=57.8
Q ss_pred CEEEEEECC--CCHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCC---CCCCHHHHH--CC
Q ss_conf 869999889--705788998888-6594069852898988997239979999853889999999---753768980--89
Q gi|254780414|r 8 SKVLIIDFG--SQFTQLIARRVR-ESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS---PQIPKEILE--SN 79 (520)
Q Consensus 8 ~~IlIlDfG--SQytqLIaRriR-elgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~a---p~~~~~I~~--~~ 79 (520)
=+|.|+-|- |.||-+ -=+| |.+||..-++.+.++. +++.||+.|+-+|+.|-.+ -.++.+|.+ ..
T Consensus 249 irv~v~RLpriSNFTD~--ePL~~~~~V~v~fl~l~~~L~-----~~d~vIiPGsk~ti~dl~~L~~~~~~~~i~~~~~~ 321 (502)
T TIGR00313 249 IRVGVVRLPRISNFTDF--EPLRYEADVAVKFLELEDSLD-----GLDAVIIPGSKDTIADLKALKESGFAEEILDLAKE 321 (502)
T ss_pred EEEEEEECCCCCCCCCC--CHHHCCCCCEEEEECCCCCCC-----CCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 48999853763566775--221114872899832688778-----84489967996578999999746866799999606
Q ss_pred CC-EEEECHHHHHHHHHC
Q ss_conf 98-899778999989970
Q gi|254780414|r 80 IP-LLGICYGQQIMCQSL 96 (520)
Q Consensus 80 iP-ILGICyG~QlLa~~~ 96 (520)
+| |+|||=|.|+|++.+
T Consensus 322 ig~V~GICGGYQ~LG~~l 339 (502)
T TIGR00313 322 IGIVIGICGGYQMLGKEL 339 (502)
T ss_pred CCEEEEECCCHHHHHHHH
T ss_conf 988998347602100310
No 175
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.00 E-value=0.0013 Score=46.11 Aligned_cols=72 Identities=22% Similarity=0.396 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHH--HHHCCCCEEEECCCCCCCCCCC-CCC---CCHHHHHCCCCEEEECHHHHHH
Q ss_conf 8899888865940698528989889--9723997999985388999999-975---3768980899889977899998
Q gi|254780414|r 21 QLIARRVRESKVYCEVIAFKNALDY--FKEQNPQAIILSGSPASSLDID-SPQ---IPKEILESNIPLLGICYGQQIM 92 (520)
Q Consensus 21 qLIaRriRelgVyseI~P~~~~~e~--i~~~~p~GIILSGGP~SV~d~~-ap~---~~~~I~~~~iPILGICyG~QlL 92 (520)
......+++.+....+++....... ....+++++|+.||+....... ... .-.+.+..+.|++|+|.|+|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vii~gg~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~G~~~l 92 (92)
T cd03128 15 ASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHCCEEEECCCCCCCCCCHHCHHHHHHHHHHHHCCCEEEEECCHHHHC
T ss_conf 999999997799799995389964453686458899978998664210109899999999998799799999047539
No 176
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)). The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=96.96 E-value=0.00012 Score=53.51 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=57.1
Q ss_pred EEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCC----CCCCCCCCHHHHHCCCCEEEEC
Q ss_conf 999889705788998888659406985289898899723997999985388999----9999753768980899889977
Q gi|254780414|r 11 LIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSL----DIDSPQIPKEILESNIPLLGIC 86 (520)
Q Consensus 11 lIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~----d~~ap~~~~~I~~~~iPILGIC 86 (520)
+|-||-+..|.- .+.|. ++.-|.+++++...++++|+|.||-.|.+ |++.-.+-++.++.++||..||
T Consensus 45 aihdfeGdqty~-----~~~g~---~v~vd~~~~~v~~~~YDal~ipGG~a~~e~LR~d~~~~~lvR~f~e~gK~vaaIC 116 (189)
T TIGR01382 45 AIHDFEGDQTYT-----EKHGY---SVTVDATIDDVDPEDYDALVIPGGRASPEYLRLDEKVIRLVREFVEKGKPVAAIC 116 (189)
T ss_pred EEECCCCCCCCC-----CCCCE---EEEEECCEECCCHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 101156763213-----47881---6887441214785256478971773560001487689999999841788199984
Q ss_pred HHHHHHHHHCCCEEEECC
Q ss_conf 899998997096999869
Q gi|254780414|r 87 YGQQIMCQSLGGKTKNSQ 104 (520)
Q Consensus 87 yG~QlLa~~~GG~V~~~~ 104 (520)
.|-|+|+.+ .|-|++
T Consensus 117 hgp~lLi~A---~VlrGk 131 (189)
T TIGR01382 117 HGPQLLISA---GVLRGK 131 (189)
T ss_pred CCCEEEEEC---CEECCC
T ss_conf 530000025---510375
No 177
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing); InterPro: IPR006426 These sequences represent glutamine-hydrolysing asparagine synthase. The group have a poorly conserved C-terminal extension while bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis .; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process.
Probab=96.89 E-value=0.0098 Score=39.78 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=65.2
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-------CCEEEEEECCC--CCCCCCHH--------HHHHHHHHCCCCCEEEE
Q ss_conf 444036640564047799999986223-------65699997389--55156278--------99998862369857997
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIG-------INLTCVLVDHG--FMRKNEVE--------NIISLFKGYPNFPLRVV 283 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig-------~~l~~vfVD~G--llRknE~~--------~v~~~~~~~~~~~l~~v 283 (520)
.|..|=|.||||||||.+|+++.+-+. .+++-.=|+-+ ==-.+|+. .-.+ ..+++|++.+.+
T Consensus 310 aDvpvG~~LSGGlDSS~vaa~a~~~~~~~~~~W~~~~~tFsigf~~~~~~~~Es~l~P~~D~P~A~~-vA~~~G~~h~~~ 388 (646)
T TIGR01536 310 ADVPVGVLLSGGLDSSLVAAIARREAPSEGVDWKGPVKTFSIGFEGDSKDFDESKLRPDDDQPYARK-VADELGTEHHEV 388 (646)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEECCCCCCCCHHHHHH-HHHHHCCCCEEE
T ss_conf 0560688871716799999999997676433117743478865177876530025789986189999-999849832489
Q ss_pred E-HHHHHHHHHCCC----C--CHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5-889999996689----8--889999887565899999999743
Q gi|254780414|r 284 D-ASERFIRKLKNI----V--DPETKRKVIGQLFIEVFEEEAKKI 321 (520)
Q Consensus 284 d-a~~~Fl~~L~gv----~--DPE~KRkiIG~~Fi~vf~~~a~~~ 321 (520)
. ..+.+++.|.-| . ||=.=|-+|+--|+- +.|++.
T Consensus 389 ~~s~~e~~~~l~~v~~~~e~y~p~~~~~~~P~Yl~s---~~ar~~ 430 (646)
T TIGR01536 389 LISEEEVLKALPEVIYHLETYDPTAIRASIPLYLLS---KLARED 430 (646)
T ss_pred EECHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---HHHHHC
T ss_conf 845899999988876542488543031123589999---999962
No 178
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=96.81 E-value=0.0059 Score=41.37 Aligned_cols=178 Identities=21% Similarity=0.260 Sum_probs=100.4
Q ss_pred CCCCEEEEEECCCCH----HHHHHHHHH--HCCCEEEEECC------C----------CCHHHHHHCCCCEEEECCCCCC
Q ss_conf 448869999889705----788998888--65940698528------9----------8988997239979999853889
Q gi|254780414|r 5 ERSSKVLIIDFGSQF----TQLIARRVR--ESKVYCEVIAF------K----------NALDYFKEQNPQAIILSGSPAS 62 (520)
Q Consensus 5 ~~~~~IlIlDfGSQy----tqLIaRriR--elgVyseI~P~------~----------~~~e~i~~~~p~GIILSGGP~S 62 (520)
.+--+|+||..=-+- +| |+|-+- -|.|.-+.+-- + .+.++++..+.+|.|++|-|--
T Consensus 33 IRPL~IlilNLMP~Ki~TE~Q-~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAPve 111 (307)
T COG1897 33 IRPLKILILNLMPKKIETETQ-ILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGAPVE 111 (307)
T ss_pred CCCCEEEEEECCCHHHHHHHH-HHHHHCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHCHHHHHHCCCCCEEEECCCCC
T ss_conf 753103543247355777999-9998569975378899983376778880899999860699886454671598388534
Q ss_pred C--CCCCCCCC-CHHHHHC---CC-CEEEECHHHHHHHHHCCCE-EEECCCCCCCEEEEE-ECCCCCCCCCCCCCCCCEE
Q ss_conf 9--99999753-7689808---99-8899778999989970969-998698661036675-2388622278726655336
Q gi|254780414|r 63 S--LDIDSPQI-PKEILES---NI-PLLGICYGQQIMCQSLGGK-TKNSQSREFGRAFIE-IKKNCSLLKGMWEKGSKQQ 133 (520)
Q Consensus 63 V--~d~~ap~~-~~~I~~~---~i-PILGICyG~QlLa~~~GG~-V~~~~~~EyG~~~I~-i~~~~~lf~gl~~~~~~~~ 133 (520)
- +++-+.+- ...|++- ++ -.|-||+|.|.--..+=|- -...+.+-+|...-. ....+.++.|+.+. +.
T Consensus 112 ~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~GVy~h~~l~p~~~l~rGfdd~---f~ 188 (307)
T COG1897 112 LLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSGVYKHDILSPHSLLTRGFDDS---FL 188 (307)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCEEECCCCCCCCHHHCCCCCC---CC
T ss_conf 457004306999999999886420013566888888899980987343654340212212458662644267743---23
Q ss_pred EEEE-CCC----HHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHH
Q ss_conf 8600-220----11012444211232398317889863500112465212221520257
Q gi|254780414|r 134 VWMS-HGD----QVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQ 187 (520)
Q Consensus 134 VwmS-H~D----~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~ 187 (520)
+-.| |.| .+.+.| +.++++.|+..-+..++.++.+..=+--|||-.-+.--.+
T Consensus 189 ~PhSR~t~~~~e~i~~~~-~LeIL~es~e~G~~l~a~k~~r~ifv~gH~EYD~~tL~~E 246 (307)
T COG1897 189 APHSRYTDVPKEDILAVP-DLEILAESKEAGVYLLASKDGRNIFVTGHPEYDATTLAQE 246 (307)
T ss_pred CCCCCCCCCCHHHHHHCC-CCEEEECCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHH
T ss_conf 764222457999984289-8513432664536898627777678717741025678899
No 179
>PTZ00077 asparagine synthetase; Provisional
Probab=96.78 E-value=0.018 Score=37.86 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=27.5
Q ss_pred HHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 999997650-444036640564047799999986223
Q gi|254780414|r 212 IVSRIKEQV-GNERVICAVSGGVDSTVAAFLIYEAIG 247 (520)
Q Consensus 212 ~i~~Ir~~v-g~~kVi~~lSGGVDStV~A~Ll~kAig 247 (520)
..+.++++. .|-.|=|.||||+|||..|+|+.|-++
T Consensus 226 L~~AV~~rL~sDVPvG~lLSGGLDSSlIaAia~k~l~ 262 (610)
T PTZ00077 226 LEKAVIKRLMGDVPFGILLSGGLDSSIIAAILAKHLK 262 (610)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9999999822567236663477058999999998654
No 180
>KOG3210 consensus
Probab=96.54 E-value=0.01 Score=39.72 Aligned_cols=87 Identities=14% Similarity=0.282 Sum_probs=48.2
Q ss_pred EEEEEECCCCHH-H--HHHHHHHHC--CCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCC---C-CC--CCCCHHHHH
Q ss_conf 699998897057-8--899888865--94069852898988997239979999853889999---9-99--753768980
Q gi|254780414|r 9 KVLIIDFGSQFT-Q--LIARRVRES--KVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLD---I-DS--PQIPKEILE 77 (520)
Q Consensus 9 ~IlIlDfGSQyt-q--LIaRriRel--gVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d---~-~a--p~~~~~I~~ 77 (520)
-|-||-.-+-+- | -..|.+-|- ++.-+|.|-.+ .+++ .+.+|+|+.||-+.... + +. +.+..-+-+
T Consensus 13 VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT-~~D~--aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn 89 (226)
T KOG3210 13 VIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT-KNDL--AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHN 89 (226)
T ss_pred EEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC-HHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 66531021578998878877530586267888886157-7778--65777783398502678887441017779998448
Q ss_pred CCCCEEEECHHHHHHHHHCCC
Q ss_conf 899889977899998997096
Q gi|254780414|r 78 SNIPLLGICYGQQIMCQSLGG 98 (520)
Q Consensus 78 ~~iPILGICyG~QlLa~~~GG 98 (520)
-..|++|-|-||-+|.+.+-+
T Consensus 90 ~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210 90 PSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred CCCCEEEECHHHHHHHHHHCC
T ss_conf 886403410225310565528
No 181
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase; InterPro: IPR010073 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I) perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit .; GO: 0004642 phosphoribosylformylglycinamidine synthase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=96.52 E-value=0.044 Score=35.10 Aligned_cols=189 Identities=20% Similarity=0.298 Sum_probs=107.2
Q ss_pred CCCCCCEEEEEE-CCC--CHHHHHHHHHHHCCCEE-EEECCCCCHHHHHHCCCCEEEECCCCC--CCCCCCC-----CCC
Q ss_conf 634488699998-897--05788998888659406-985289898899723997999985388--9999999-----753
Q gi|254780414|r 3 KRERSSKVLIID-FGS--QFTQLIARRVRESKVYC-EVIAFKNALDYFKEQNPQAIILSGSPA--SSLDIDS-----PQI 71 (520)
Q Consensus 3 ~~~~~~~IlIlD-fGS--QytqLIaRriRelgVys-eI~P~~~~~e~i~~~~p~GIILSGGP~--SV~d~~a-----p~~ 71 (520)
++.-.+||+||- =|+ |+- .|-.....|..| .|+=.|.-.-.+.....+|++.-||=+ -|.+.+. ..+
T Consensus 1123 ~~G~~PkvAILREqG~NG~~E--MAaAF~rAGF~~~DVhmsDL~~Grv~Ld~F~glvacGGFSYgDVLGag~GWA~SIlF 1200 (1401)
T TIGR01735 1123 NKGVKPKVAILREQGVNGDIE--MAAAFDRAGFEAIDVHMSDLLAGRVHLDEFRGLVACGGFSYGDVLGAGKGWAKSILF 1200 (1401)
T ss_pred CCCCCCCEEEEEECCCCCCHH--HHHHHHHCCCCEEEEEEEEHCCCCCCHHHCCEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 368986178885068670068--999997458957852310010056652245558997175302130112446776640
Q ss_pred CHHH-------H-HCCCCEEEECHHHHHHHHHCC--------CE--------------EEECC-CC--CCCEEEEEECCC
Q ss_conf 7689-------8-089988997789999899709--------69--------------99869-86--610366752388
Q gi|254780414|r 72 PKEI-------L-ESNIPLLGICYGQQIMCQSLG--------GK--------------TKNSQ-SR--EFGRAFIEIKKN 118 (520)
Q Consensus 72 ~~~I-------~-~~~iPILGICyG~QlLa~~~G--------G~--------------V~~~~-~~--EyG~~~I~i~~~ 118 (520)
.+.+ | +-+-=-||||=|+|+|+...| ++ ..+.+ .. |=-.+.+++.+.
T Consensus 1201 ~~~~~~qF~~Ff~rpdtf~LGVCNGCQm~snL~~~iPG~~~wp~~e~GPD~~~~RPGlFvrn~LSerFEaR~a~V~v~~s 1280 (1401)
T TIGR01735 1201 NPRLRDQFAAFFKRPDTFSLGVCNGCQMLSNLLEIIPGTENWPHLEMGPDSSQARPGLFVRNRLSERFEARVALVEVKES 1280 (1401)
T ss_pred CHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEEEEECCC
T ss_conf 57789999986058884230321078999976434787888884122788888887513320235201321265465566
Q ss_pred -CCCCCCCCCCCCCEEEEEECCCHHH--CCC--------CCCCEEECC-------------CCCC---EEEEEECCCCEE
Q ss_conf -6222787266553368600220110--124--------442112323-------------9831---788986350011
Q gi|254780414|r 119 -CSLLKGMWEKGSKQQVWMSHGDQVE--HIP--------EGFEVIASS-------------DSTP---FAFIADEKRKYY 171 (520)
Q Consensus 119 -~~lf~gl~~~~~~~~VwmSH~D~V~--~lP--------~gf~viA~S-------------~~~~---iaai~~~~~~iy 171 (520)
|-+|+|.. ++..-||.+||..=. +.| .|...+-+- .|+. |+||.+.|-++-
T Consensus 1281 ~Si~L~GM~--GS~LPv~~aHGEG~a~F~~~~~~~~~~~~gl~aLry~D~~G~~Te~YPlNPNGSP~GIagits~DGR~~ 1358 (1401)
T TIGR01735 1281 PSIMLKGMA--GSRLPVAVAHGEGRAEFESEELLAEADASGLVALRYVDDDGNVTEAYPLNPNGSPEGIAGITSADGRVT 1358 (1401)
T ss_pred CEEEECCCC--CCCCCEEEEECCCEEECCCHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 500113778--883773775066256418878988775519557786757557331186888877443020118887589
Q ss_pred EEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 246521222152025779987550106441114067899
Q gi|254780414|r 172 AVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHK 210 (520)
Q Consensus 172 GVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~ 210 (520)
.++=|||=. |. -..-.|.|+++-+
T Consensus 1359 imMPHPER~-----------~R----~~q~sW~P~~W~e 1382 (1401)
T TIGR01735 1359 IMMPHPERV-----------FR----AVQNSWRPEDWDE 1382 (1401)
T ss_pred EECCCCCCC-----------CC----CCCCCCCCCCCCC
T ss_conf 666889721-----------12----4668778778863
No 182
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.45 E-value=0.02 Score=37.61 Aligned_cols=194 Identities=18% Similarity=0.120 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHCC--C-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 67899999999765044-4036640564047799999986223--6-569999738955156278999988623698579
Q gi|254780414|r 206 SSYHKEIVSRIKEQVGN-ERVICAVSGGVDSTVAAFLIYEAIG--I-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLR 281 (520)
Q Consensus 206 ~~~~~~~i~~Ir~~vg~-~kVi~~lSGGVDStV~A~Ll~kAig--~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~ 281 (520)
+....+.|--||+.+.. ++..+..|||=||+|..-|..||.- . -+-.++||||.= -.|.-+-.+.+.+..|++++
T Consensus 20 ~~LEaesI~I~RE~~a~f~~pvmL~S~GKDS~VmlhLA~KAF~p~~iPfPllHIDTg~k-F~Emi~fRD~~a~~~~l~Li 98 (312)
T PRK12563 20 DRLEAESIHILREVVAECSKPVMLYSIGKDSSVMLHLAMKAFRPTRPPFPLLHVDTTWK-FREMIDFRDRRAKELGLDLV 98 (312)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-HHHHHHHHHHHHHHHCCEEE
T ss_conf 99998889999999997369679861674299999999997377899973588636887-59999999999998198689
Q ss_pred EEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHH
Q ss_conf 9758899999966898889999887565899-999999743997099864622024542024677763034430232011
Q gi|254780414|r 282 VVDASERFIRKLKNIVDPETKRKVIGQLFIE-VFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLP 360 (520)
Q Consensus 282 ~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~-vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp 360 (520)
+..-.+ .++--..|+..-......-++ +--+.|-+-.+.+.+. |-..-|==.|- ..-.|=||-+-.|-
T Consensus 99 V~~n~~----~i~~g~~p~~~~~~~~~~~lKT~~L~~ale~~~fDa~~-gGaRRDEEksR-----AKERiFS~Rd~~~~- 167 (312)
T PRK12563 99 VHHNPD----GIARGIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAI-GGARRDEEKSR-----AKERIFSFRSAFHR- 167 (312)
T ss_pred EECCHH----HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE-ECCCCCCCCCC-----CCCEEECCCCCCCC-
T ss_conf 832878----88669996767837776689889999999973988785-04532134234-----43403066677889-
Q ss_pred HHHCCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 3203202237-898738999999998199988942688898311122100036789999999999999999864653
Q gi|254780414|r 361 EHMDMKLVEP-LKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIY 436 (520)
Q Consensus 361 ~~~~~~liEP-l~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly 436 (520)
+.-|-=-| |=+||+-. -.||=.+||---..=.-+||- ..|..+.+.-..||
T Consensus 168 --WDPknQrPElWnlyN~~--------------------~~~Geh~RVfPlsNWTElDIW---~YI~~E~Ipi~~LY 219 (312)
T PRK12563 168 --WDPKAQRPELWSLYNAR--------------------LRRGESLRVFPLSNWTELDVW---QYIAREKIPLVPLY 219 (312)
T ss_pred --CCCCCCCHHHHHHHCCC--------------------CCCCCEEEECCCCCCCHHHHH---HHHHHHCCCCCCCE
T ss_conf --88555883587761556--------------------799971442235566178999---99998288988612
No 183
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=96.41 E-value=0.038 Score=35.61 Aligned_cols=179 Identities=24% Similarity=0.396 Sum_probs=103.9
Q ss_pred CCCCCEEEEEECC---CCHHHHHHHHHHHCCCEEEEECCCC-C-------HHHHH-HC-CCCEEEECCCCCCCCCC--CC
Q ss_conf 3448869999889---7057889988886594069852898-9-------88997-23-99799998538899999--99
Q gi|254780414|r 4 RERSSKVLIIDFG---SQFTQLIARRVRESKVYCEVIAFKN-A-------LDYFK-EQ-NPQAIILSGSPASSLDI--DS 68 (520)
Q Consensus 4 ~~~~~~IlIlDfG---SQytqLIaRriRelgVyseI~P~~~-~-------~e~i~-~~-~p~GIILSGGP~SV~d~--~a 68 (520)
+-.+++|+|==|= |-|= -+|+..+-|....+++... + .+.+. +. +-.=++|.|| -|.-|| ++
T Consensus 1013 ~v~KP~VvIpvFPGtNsEYD--~~~aFe~~GAev~~~~~~nL~~~a~~~Sv~~l~~~i~ksqI~~lpGG-FSAgDEPDGS 1089 (1279)
T TIGR01857 1013 KVEKPRVVIPVFPGTNSEYD--SAKAFEKEGAEVKLVILRNLTEEALVESVEELVDEIDKSQILMLPGG-FSAGDEPDGS 1089 (1279)
T ss_pred EEECCEEEEECCCCCCCHHH--HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCC
T ss_conf 54078679813588984888--88898545895899600038888999999999874046408995587-8777788852
Q ss_pred ----------CCCCHH---HHH-CCCCEEEECHHHHHHHHHCC----CEEEE----CCCCCC---CEE-----EEEE-CC
Q ss_conf ----------753768---980-89988997789999899709----69998----698661---036-----6752-38
Q gi|254780414|r 69 ----------PQIPKE---ILE-SNIPLLGICYGQQIMCQSLG----GKTKN----SQSREF---GRA-----FIEI-KK 117 (520)
Q Consensus 69 ----------p~~~~~---I~~-~~iPILGICyG~QlLa~~~G----G~V~~----~~~~Ey---G~~-----~I~i-~~ 117 (520)
|++..+ +++ .+==|||||=|+|.|.+. | |++.. +++--| |++ ...+ .+
T Consensus 1090 AKFi~~~l~npkv~~~v~~lL~~RDGLiLGiCNGFQALvK~-GLlPYG~i~~~~~~~pTLtyN~inrH~s~~V~Tki~~~ 1168 (1279)
T TIGR01857 1090 AKFIAAILRNPKVKEAVKKLLKERDGLILGICNGFQALVKL-GLLPYGEIVDVEEDSPTLTYNKINRHVSKIVRTKIASK 1168 (1279)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH-CCCCCCCEEECCCCCCCCCCCCHHHHHEEEEEEEECCC
T ss_conf 89999976081479999999960798498620056788882-47888642400457863120201012010123565047
Q ss_pred CCCCCCCCCCCCCCEEEEEECCC-------HH-HCCCCC---------CCE-----EECCCCCC---EEEEEECCCCEEE
Q ss_conf 86222787266553368600220-------11-012444---------211-----23239831---7889863500112
Q gi|254780414|r 118 NCSLLKGMWEKGSKQQVWMSHGD-------QV-EHIPEG---------FEV-----IASSDSTP---FAFIADEKRKYYA 172 (520)
Q Consensus 118 ~~~lf~gl~~~~~~~~VwmSH~D-------~V-~~lP~g---------f~v-----iA~S~~~~---iaai~~~~~~iyG 172 (520)
+||-|..+ ..+..+.+-.|||. .+ .+|-++ |.- .-.++|+. |++|-.++-+|+|
T Consensus 1169 ~SPWL~~~-~vGdih~ipvSHGEGrFva~~~~l~~L~~NGQIatQYVD~~G~~~m~~~yNPNGS~~AIEGI~S~dG~i~G 1247 (1279)
T TIGR01857 1169 NSPWLSEV-SVGDIHAIPVSHGEGRFVASDEVLKELRENGQIATQYVDFEGKPAMDLKYNPNGSSLAIEGIISPDGRIFG 1247 (1279)
T ss_pred CCCCCCCE-EECCEEEEEEECCCCCEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCEECCCCEEEE
T ss_conf 78840210-32427753344489832307789989863796378987267863578866978530246344568972752
Q ss_pred EEEEEHHHCCCHHHHHHHH
Q ss_conf 4652122215202577998
Q gi|254780414|r 173 VQFHPEVVHTVGGSQLIDN 191 (520)
Q Consensus 173 VQFHPEV~hT~~G~~iL~N 191 (520)
=+=|-| ..|..+++|
T Consensus 1248 KMGHSE----R~~~~lf~N 1262 (1279)
T TIGR01857 1248 KMGHSE----RYGDGLFKN 1262 (1279)
T ss_pred ECCCEE----ECCCCCEEC
T ss_conf 045202----447885460
No 184
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=96.31 E-value=0.026 Score=36.72 Aligned_cols=141 Identities=20% Similarity=0.111 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHCC--C-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 67899999999765044-4036640564047799999986223--6-569999738955156278999988623698579
Q gi|254780414|r 206 SSYHKEIVSRIKEQVGN-ERVICAVSGGVDSTVAAFLIYEAIG--I-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLR 281 (520)
Q Consensus 206 ~~~~~~~i~~Ir~~vg~-~kVi~~lSGGVDStV~A~Ll~kAig--~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~ 281 (520)
+....+.|--||+.+.. ++..+.-|||=||||..-|..||.= . -+-.++||||.= -.|.-+-.+.+.+..|++|+
T Consensus 9 ~~LEaesI~I~RE~~a~f~~pvmL~S~GKDS~VmLhLarKAF~p~~iPfPllHIDTg~k-F~Emi~fRD~~a~e~gl~Li 87 (300)
T PRK05253 9 DQLEAESIHIIREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWK-FPEMIEFRDRRAKELGLELI 87 (300)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC-HHHHHHHHHHHHHHHCCCEE
T ss_conf 99998889999999997369679871672599999999998578899963488307998-18999999999998499789
Q ss_pred EEEHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 9758899999966898889999887565899--9999997439970998646220245420246777630344302320
Q gi|254780414|r 282 VVDASERFIRKLKNIVDPETKRKVIGQLFIE--VFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGG 358 (520)
Q Consensus 282 ~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~--vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgg 358 (520)
+-.-.+ .++--..|+.....-...-.+ -..+...+ .+.+.+.- -..-| |-.+. ..-.|=||-|-.|
T Consensus 88 V~~n~e----~i~~g~~p~~~g~~~~~~~lKT~~L~~al~~-~~fda~~g-GaRRD--Ee~sR---AKERiFS~R~~~~ 155 (300)
T PRK05253 88 VHSNPE----GIARGINPFTHGSAKHTNIMKTEGLKQALEK-YGFDAAFG-GARRD--EEKSR---AKERIFSFRDEFG 155 (300)
T ss_pred EEECHH----HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCEEEE-CCCCC--CCCCC---CCCCCCCCCCCCC
T ss_conf 975767----7756999566882223157878999999996-48765651-01234--43212---1254247756468
No 185
>TIGR00364 TIGR00364 exsB protein; InterPro: IPR004479 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Sinorhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA , . In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance . The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr ..
Probab=96.28 E-value=0.0077 Score=40.52 Aligned_cols=160 Identities=22% Similarity=0.257 Sum_probs=101.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEE-EEEHH---HHHH-HHHCCCC
Q ss_conf 36640564047799999986223-6569999738955-156278999988623698579-97588---9999-9966898
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFM-RKNEVENIISLFKGYPNFPLR-VVDAS---ERFI-RKLKNIV 297 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~Gll-RknE~~~v~~~~~~~~~~~l~-~vda~---~~Fl-~~L~gv~ 297 (520)
.|..||||.||||+++++.+--| ++++||=-|=|== -.-|-+-=.+ ..+.+|++-+ .||-+ +.=- ++|-.-.
T Consensus 1 Av~~lSGG~DStT~~~~a~~~~GkyeV~a~TF~YGQR~H~~Ele~A~~-ia~~Lgi~~~~~~Dl~~l~~l~~YsaLt~~~ 79 (227)
T TIGR00364 1 AVVVLSGGQDSTTVLLIALDEGGKYEVHAITFDYGQRAHSRELESARK-IAEALGIRHHFVIDLSLLKQLGKYSALTDEQ 79 (227)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH-HHHHHCCCCEEEECHHHHHHHHCCCCCCCCC
T ss_conf 968743734689999999961795079985465013789999999999-9998089707861779998554045235787
Q ss_pred -CH-----H----HHHHHHHHHHH----HHHH----HHHHHCCC-----CEEEEECCCCCHHHHHHCCCCCCCCEEEEEE
Q ss_conf -88-----9----99988756589----9999----99974399-----7099864622024542024677763034430
Q gi|254780414|r 298 -DP-----E----TKRKVIGQLFI----EVFE----EEAKKIGG-----AQFLGQGTLYPDVIESISFFGGPSSIIKSHH 354 (520)
Q Consensus 298 -DP-----E----~KRkiIG~~Fi----~vf~----~~a~~~~~-----~~~L~QGTlypDvIES~~~~~~~~~~IKsHH 354 (520)
+| | +=--++=+||+ -||- -.|.+++- -.-+.-.-.|||-=+- -|||--
T Consensus 80 ~~~~~~~~e~d~~~~~E~~p~tfVPgRN~~fl~~a~~yA~~~gA~~v~~G~~~~DfSgYPDCr~E---------Fvka~n 150 (227)
T TIGR00364 80 EIPEQKSNEEDKEKALETLPNTFVPGRNLIFLSLAASYAEALGAEAVITGVCETDFSGYPDCRDE---------FVKALN 150 (227)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCHH---------HHHHHH
T ss_conf 56766665320235653113333780479999999998886184252200100036579888688---------999999
Q ss_pred CCCCHH-HHHCCCH-----HHHHHHHHHHHHHHHHHHHC-----CCHHHHC
Q ss_conf 232011-3203202-----23789873899999999819-----9988942
Q gi|254780414|r 355 NVGGLP-EHMDMKL-----VEPLKELFKDEVRLLGKELR-----LPDSFVE 394 (520)
Q Consensus 355 Nvgglp-~~~~~~l-----iEPl~~l~KdEVR~lg~~Lg-----lp~~~~~ 394 (520)
.+--|= -.-..++ .=||-+|-|-|.=++|.+|| +|-+..|
T Consensus 151 ~~l~Lgn~~~~v~i~Piql~aPL~~ltKaeiv~la~elGkk~l~lv~~~T~ 201 (227)
T TIGR00364 151 HALNLGNMLTPVEIRPIQLEAPLMDLTKAEIVKLADELGKKLLDLVIKETY 201 (227)
T ss_pred HHHHHHCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999974126881120246666701269899999988735112311000111
No 186
>KOG0573 consensus
Probab=96.12 E-value=0.013 Score=38.92 Aligned_cols=72 Identities=28% Similarity=0.356 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH----------------CCCCEEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 257799875501064411140678999999997650----------------4440366405640477999999862236
Q gi|254780414|r 185 GSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQV----------------GNERVICAVSGGVDSTVAAFLIYEAIGI 248 (520)
Q Consensus 185 G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~v----------------g~~kVi~~lSGGVDStV~A~Ll~kAig~ 248 (520)
+..+.++|+.. -...-+...++.-.+..+++.| -..+|-..+||||||||.|+|+|..+-.
T Consensus 200 ~~~i~~~~l~~---~~~~~~v~~l~~~l~ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ 276 (520)
T KOG0573 200 LCDISEIFLNQ---SHRSEVVSGLHTGLRDSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPE 276 (520)
T ss_pred CCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 30067887656---888888766677778877544312575575421533224576799964884089999999860698
Q ss_pred CEEEEEECCCC
Q ss_conf 56999973895
Q gi|254780414|r 249 NLTCVLVDHGF 259 (520)
Q Consensus 249 ~l~~vfVD~Gl 259 (520)
|-.-=.|+.-|
T Consensus 277 ne~IdLINVaF 287 (520)
T KOG0573 277 NEPIDLINVAF 287 (520)
T ss_pred CCCEEEEEEEC
T ss_conf 88636898602
No 187
>KOG1907 consensus
Probab=95.68 E-value=0.035 Score=35.83 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEC
Q ss_conf 99999999819998894268889831112210
Q gi|254780414|r 377 DEVRLLGKELRLPDSFVERHPCPGPGLAIRCI 408 (520)
Q Consensus 377 dEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~ 408 (520)
+-|+++=++-|++.+.+.+-| -+-|...+|.
T Consensus 956 ~~v~~~~~~~gv~~~~ig~~~-~~~g~~~~i~ 986 (1320)
T KOG1907 956 EKVLEIFSEAGVKCEYIGKAS-AVFGQDAHIK 986 (1320)
T ss_pred HHHHHHHHHCCCCCEEEEEEC-CCCCCCCEEE
T ss_conf 999999986498612541100-3447774599
No 188
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.64 E-value=0.06 Score=34.13 Aligned_cols=189 Identities=18% Similarity=0.282 Sum_probs=95.1
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCC---CCCCCCCCCCC---HHHHHCCCCEEEECHHHHHHHHHC
Q ss_conf 998888659406985289898899723997999985388---99999997537---689808998899778999989970
Q gi|254780414|r 23 IARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPA---SSLDIDSPQIP---KEILESNIPLLGICYGQQIMCQSL 96 (520)
Q Consensus 23 IaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~---SV~d~~ap~~~---~~I~~~~iPILGICyG~QlLa~~~ 96 (520)
+-+|.+-.|+-.+|.+-+.. +.+....++=+++.||-. +.-.++-+... +..++.+.|+|.||-|.|+|.+.+
T Consensus 26 Lr~ra~~rgi~v~i~~vsl~-d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY 104 (250)
T COG3442 26 LRQRAEKRGIKVEIVEVSLT-DTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYY 104 (250)
T ss_pred EHHHHHHCCCCEEEEEEECC-CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCHHHCCCEE
T ss_conf 45789866981699996347-89874440279951720788888752100103779999866995899825553304032
Q ss_pred ----CCEEE-----------ECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECC------CHHHCCCCCCCEEECC
Q ss_conf ----96999-----------86986610366752388622278726655336860022------0110124442112323
Q gi|254780414|r 97 ----GGKTK-----------NSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG------DQVEHIPEGFEVIASS 155 (520)
Q Consensus 97 ----GG~V~-----------~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~------D~V~~lP~gf~viA~S 155 (520)
|-++. +..+|-.|...++.+.....| ..+..=+-.|+ +.+. |=|-.+...-
T Consensus 105 ~~a~G~ri~GlGiLd~~T~~~~~~R~IGdiv~~~~~~~e~~------~et~~GFENH~GrT~L~~d~~--pLG~Vv~G~G 176 (250)
T COG3442 105 ETASGTRIDGLGILDHYTENPQTKRFIGDIVIENTLAGEEF------GETLVGFENHGGRTYLGPDVK--PLGKVVYGYG 176 (250)
T ss_pred ECCCCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHH------CCEEEEEECCCCCEECCCCCC--CCEEEEECCC
T ss_conf 16898476132211234126666504536886214565773------880462543788134189876--4600788667
Q ss_pred CC--CCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHH-HHHCCCC
Q ss_conf 98--317889863500112465212221520257799875501064--411140678999999997-6504440
Q gi|254780414|r 156 DS--TPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGI--QDNWVMSSYHKEIVSRIK-EQVGNER 224 (520)
Q Consensus 156 ~~--~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~--~~~W~~~~~~~~~i~~Ir-~~vg~~k 224 (520)
+| -..++.-+ ++++|.-||=-.- + .--++-.-++...|+. .....+..+-+....++| +...+.+
T Consensus 177 Nn~eD~~eG~~y--kn~~aTY~HGP~L-~-rNp~LAd~Ll~tAl~~ky~~~i~L~~ldd~l~~~~r~e~l~~~~ 246 (250)
T COG3442 177 NNGEDGTEGAHY--KNVIATYFHGPIL-S-RNPELADRLLTTALEKKYGQEIELPPLDDILADQARRERLADRK 246 (250)
T ss_pred CCCCCCCCCEEE--EEEEEEEECCCCC-C-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 775546642345--2047875117544-6-88789999999999886277666786230899999999998644
No 189
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=95.37 E-value=0.011 Score=39.45 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=42.1
Q ss_pred ECCCCCHHHHHHCCCCEEEECCCCCCCCC-CCCCC---CCHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 52898988997239979999853889999-99975---3768980899889977899998997
Q gi|254780414|r 37 IAFKNALDYFKEQNPQAIILSGSPASSLD-IDSPQ---IPKEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 37 ~P~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap~---~~~~I~~~~iPILGICyG~QlLa~~ 95 (520)
+..+.++++....+++++|+.||+.+..+ ...|. +-++..+.+.||.+||-|.++||.+
T Consensus 47 i~~d~~l~~~~~~~~D~liipGG~~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~G~~~La~a 109 (163)
T cd03135 47 VKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred EECCCCHHHCCCCCCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHHHHHHC
T ss_conf 946876655782017989986898217677669999999999998299479864548999986
No 190
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=94.71 E-value=0.29 Score=29.24 Aligned_cols=114 Identities=25% Similarity=0.355 Sum_probs=75.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEE---EEECCC--CCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCC
Q ss_conf 03664056404779999998622365699---997389--5515627899998862369857997588999999668988
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTC---VLVDHG--FMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD 298 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~---vfVD~G--llRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~D 298 (520)
|++...|||=||+-|+.+.-+. |..+.| +.=.++ +|=.-.--+..+...+-+|+++...+.+- ..|
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~-G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g--------~~e 72 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE-GHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG--------EEE 72 (223)
T ss_pred CEEEEEECCCHHHHHHHHHHHC-CCEEEEEEEEECCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCC--------CCH
T ss_conf 6899981671889999999975-9836899998159987044222256799999874488359983476--------305
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 89999887565899999999743997099864622024542024677763034430232011320320223789
Q gi|254780414|r 299 PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 299 PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
-| ++-..+..+.++ ++.+.-|-+|.+-=-+ .+-.+.+.+.++.++||=
T Consensus 73 ~e----------ve~L~~~l~~l~-~d~iv~GaI~s~yqk~---------------rve~lc~~lGl~~~~PLW 120 (223)
T COG2102 73 RE----------VEELKEALRRLK-VDGIVAGAIASEYQKE---------------RVERLCEELGLKVYAPLW 120 (223)
T ss_pred HH----------HHHHHHHHHHCC-CCEEEECHHHHHHHHH---------------HHHHHHHHHCCEEEECCC
T ss_conf 56----------999999997376-3379973433099999---------------999999972978851251
No 191
>TIGR02039 CysD sulfate adenylyltransferase, small subunit; InterPro: IPR011784 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through reaction of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS). In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids. Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules.; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0019421 sulfate reduction APS pathway.
Probab=94.59 E-value=0.32 Score=28.99 Aligned_cols=260 Identities=17% Similarity=0.174 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHCC--C-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 7899999999765044-4036640564047799999986223--6-5699997389551562789999886236985799
Q gi|254780414|r 207 SYHKEIVSRIKEQVGN-ERVICAVSGGVDSTVAAFLIYEAIG--I-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRV 282 (520)
Q Consensus 207 ~~~~~~i~~Ir~~vg~-~kVi~~lSGGVDStV~A~Ll~kAig--~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~ 282 (520)
....+.|.-|||..++ .+=++..|+|=||+|.--|..||.= . =+.-++||||. ...|.-...+..-...++.|.+
T Consensus 3 ~LE~EaI~i~REvaa~F~~PV~LyS~GKDS~VlLHLA~KaF~Pg~~PFplLHvDTgw-~f~E~~~fRD~~~~~~~~~L~v 81 (295)
T TIGR02039 3 LLEAEAIHIIREVAAEFERPVLLYSIGKDSSVLLHLARKAFYPGRLPFPLLHVDTGW-KFREMIAFRDELVAKYGLELIV 81 (295)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEECCC-CHHHHHHHHHHHHHHHCCEEEE
T ss_conf 015788999998763037976898657347999998764058888797357740663-2789999999999870976888
Q ss_pred EEHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCC--H
Q ss_conf 7588999999668988899-998875658999999997439970998646220245420246777630344302320--1
Q gi|254780414|r 283 VDASERFIRKLKNIVDPET-KRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGG--L 359 (520)
Q Consensus 283 vda~~~Fl~~L~gv~DPE~-KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgg--l 359 (520)
-..++.....+.-+++-.. .+.++--.= ..+...+. ..+ -|-|--.=|==.|-+ .--|=|--|--+ -
T Consensus 82 ~~~~~~~~~g~~P~~~~~~~~~~~~~T~~---L~~Al~~~-~FD-Aa~gGARRdEE~sRa-----KERifS~R~~~h~WD 151 (295)
T TIGR02039 82 HSNEEGIAEGINPFTEGSALHTDIMKTEA---LRQALDKN-QFD-AAFGGARRDEEKSRA-----KERIFSFRDAFHQWD 151 (295)
T ss_pred EECHHHHHHCCCCCHHHHHHHHHHHHHHH---HHHHHHHC-CCC-EEECCCCCHHHHCCC-----CCCEEHHCCCCCCCC
T ss_conf 50502354156620101245555563189---99998733-886-563166313443012-----010001003457888
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCH---
Q ss_conf 13203202237898738999999998199988942688898311122100036789999999999999999864653---
Q gi|254780414|r 360 PEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIY--- 436 (520)
Q Consensus 360 p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~~ly--- 436 (520)
|+.-. |+=+-.=-+---+|=.||+--=-.=.-+||=+ .|..+.+.-.-||
T Consensus 152 Pk~QR------------------------PELW~~YNg~~~~GE~~RvFPLSNwTE~DiW~---Y~~~~~i~~~~lYfA~ 204 (295)
T TIGR02039 152 PKKQR------------------------PELWNLYNGRISKGESVRVFPLSNWTELDIWR---YIAAENIEIVPLYFAA 204 (295)
T ss_pred CCCCC------------------------HHHHHHCCCCCCCCCEEEEECCCCCCHHHHHH---HHHHCCCCCCEEECCC
T ss_conf 51257------------------------37787505234688726872266650445898---8743465422011024
Q ss_pred -HHHHHHHEE--ECCCCCCCCCCCCCCCCCEEEEEEE---ECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf -332201045--5686324215998541447999632---168775587101898999987557504879812578
Q gi|254780414|r 437 -RKIWQAFTV--LLPVQTVGVMGDERTYEYVCSLRAV---TSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVV 506 (520)
Q Consensus 437 -~~~~q~~av--llp~~svGv~GD~R~y~~~~~lr~v---~s~d~mta~~~~~~~~~l~~is~~i~n~v~~v~rV~ 506 (520)
..|.|-=+. +.........-|+..-...|.-|.+ ..+.+...+.... .+++.++...-+.| +|-.|+.
T Consensus 205 ~RpV~~R~g~l~~~~D~~~~~~~~E~~~~~~vrfRTlGc~~~tga~~S~A~~~-~~ii~E~~~~~~sE-Rg~~R~~ 278 (295)
T TIGR02039 205 KRPVVERDGMLIMVDDERLELEPGEVVKERMVRFRTLGCYPLTGAIESDAATV-EEIIAEVAVARTSE-RGQGRAI 278 (295)
T ss_pred CCCEEECCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHCC-CCCCCCC
T ss_conf 68624107448886065246677751000045555405756454312234107-99999988753202-5452332
No 192
>PRK06850 hypothetical protein; Provisional
Probab=94.23 E-value=0.084 Score=33.13 Aligned_cols=225 Identities=20% Similarity=0.259 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHHHHC-CC-CEEEEECCCCHHHHHHHHHHHHCCC--------CEEEEEECCCCCCC------CCHHHH
Q ss_conf 06789999999976504-44-0366405640477999999862236--------56999973895515------627899
Q gi|254780414|r 205 MSSYHKEIVSRIKEQVG-NE-RVICAVSGGVDSTVAAFLIYEAIGI--------NLTCVLVDHGFMRK------NEVENI 268 (520)
Q Consensus 205 ~~~~~~~~i~~Ir~~vg-~~-kVi~~lSGGVDStV~A~Ll~kAig~--------~l~~vfVD~GllRk------nE~~~v 268 (520)
+...+++.+++|++..- |+ --+.|.|||=|||++..|+-.||-. .++-|.-||+.=-- +.+-+-
T Consensus 2 ~~~~i~~i~~ei~~~Yl~D~rPWvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnPiV~~~v~~sL~~ 81 (488)
T PRK06850 2 LGEPIEELIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRHKPVYVISTDTLVENPVVVAWVNKSLER 81 (488)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 31379999999999986379987997587719999999999999837887668988999589875677999999999999
Q ss_pred HHHHHHCCCCCEEEE----EHHHHHHHHHCCCCCH--HHH-------HHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 998862369857997----5889999996689888--999-------9887-5658999999997439970998646220
Q gi|254780414|r 269 ISLFKGYPNFPLRVV----DASERFIRKLKNIVDP--ETK-------RKVI-GQLFIEVFEEEAKKIGGAQFLGQGTLYP 334 (520)
Q Consensus 269 ~~~~~~~~~~~l~~v----da~~~Fl~~L~gv~DP--E~K-------RkiI-G~~Fi~vf~~~a~~~~~~~~L~QGTlyp 334 (520)
++...+..++++... +-.+.|.-.|-|=-=| -.+ =||= -+.||+-. +++. +.--++-||=..
T Consensus 82 i~~~A~~~~LPI~~~~v~P~~~dtFWvnlIGrGYPaP~~~FRWCTdRLKI~P~~rFI~~~---v~~~-ge~IlvLGtR~~ 157 (488)
T PRK06850 82 IKEAAKKQGLPITPHKLTPKVKDTFWVNLIGKGYPAPRRKFRWCTERLKINPSNDFIRDK---VSAF-GEVIVVLGTRKA 157 (488)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHH---HHHC-CCEEEEEECCHH
T ss_conf 999998659982268814886544335420476799987665475665148489999999---8753-978999854527
Q ss_pred HHHHHHCCCCCCCCEEEEEECCCCHHHHH----C---CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEE
Q ss_conf 24542024677763034430232011320----3---2022378987389999999981999889426888983111221
Q gi|254780414|r 335 DVIESISFFGGPSSIIKSHHNVGGLPEHM----D---MKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRC 407 (520)
Q Consensus 335 DvIES~~~~~~~~~~IKsHHNvgglp~~~----~---~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi 407 (520)
||... +.+|+.|- .+|.-+.+ . .-+.-|++++--|||=..=.. +.-||-++
T Consensus 158 ---ES~~R----a~~m~k~e-~~~~r~~Ls~h~~l~n~~vy~PI~~ws~ddVW~yL~~--------~~nPWg~~------ 215 (488)
T PRK06850 158 ---ESAAR----AQVMAKHK-IGGTRDRLSRHSTLPNSFVYTPIEDWSNDDVWKYLLQ--------WENPWGGS------ 215 (488)
T ss_pred ---HHHHH----HHHHHHHH-CCCCCCCCCCCCCCCCCEEECCHHHCCCCHHHHHHHH--------CCCCCCCC------
T ss_conf ---77999----99999875-2473012577888888689712553773379999861--------89988997------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 000367899999999999999998646533322-01045568632421599854144799963216877558
Q gi|254780414|r 408 IGEITEERINILRESDAIYREEIHKAGIYRKIW-QAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTA 478 (520)
Q Consensus 408 ~g~vt~e~~~i~r~ad~i~~~~l~~~~ly~~~~-q~~avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta 478 (520)
..+-..+ |.... ..=|-+.-..|..--|+.|-=-|+|.+ |.---.|+|
T Consensus 216 ----n~~L~~l-----------------Y~~A~~~gECPlv~d~stpSCG~SRFGCWvCTv--V~~DKSm~~ 264 (488)
T PRK06850 216 ----NKDLFTL-----------------YRGATADGECPLVVDTSTPSCGNSRFGCWVCTV--VTKDKSMEA 264 (488)
T ss_pred ----HHHHHHH-----------------HHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEE--ECCCHHHHH
T ss_conf ----6999999-----------------705788996773657999987787666167777--643372999
No 193
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.01 E-value=0.59 Score=27.05 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=45.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCC-CCCHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 03664056404779999998622365699997----389551-562789999886236985799758
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLV----DHGFMR-KNEVENIISLFKGYPNFPLRVVDA 285 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfV----D~GllR-knE~~~v~~~~~~~~~~~l~~vda 285 (520)
||++..|||=||+-|...+.+. |.++.|+.. +..-++ ..-..++.+...+.+|+++..+..
T Consensus 1 Kv~~l~SGGKDS~lAl~~a~~~-g~~v~~L~~~~~~~~~~~~~H~~~~~l~~~qAealgiPl~~~~~ 66 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE-GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEI 66 (194)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 9899977859999999999986-99259999996399880525055789999999985996699966
No 194
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=93.91 E-value=0.62 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=10.5
Q ss_pred HEEECCCCCCCCCCCCC-CCCCEEE
Q ss_conf 04556863242159985-4144799
Q gi|254780414|r 443 FTVLLPVQTVGVMGDER-TYEYVCS 466 (520)
Q Consensus 443 ~avllp~~svGv~GD~R-~y~~~~~ 466 (520)
++-++|.++ .|.+.+ ..+|+-+
T Consensus 334 M~Gvlp~~~--~m~~r~~~lGY~~~ 356 (432)
T PRK13896 334 MAGVLPADV--RMQDRYQALDHVEL 356 (432)
T ss_pred EEEEECEEE--EECCCCCCCCCEEE
T ss_conf 251354288--97778554475599
No 195
>KOG2840 consensus
Probab=93.82 E-value=0.2 Score=30.36 Aligned_cols=98 Identities=30% Similarity=0.374 Sum_probs=63.6
Q ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHH---H--HCCCCEEEEEECCCC--CCCCCHHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 765044403664056404779999998---6--223656999973895--515627899998862369857997588999
Q gi|254780414|r 217 KEQVGNERVICAVSGGVDSTVAAFLIY---E--AIGINLTCVLVDHGF--MRKNEVENIISLFKGYPNFPLRVVDASERF 289 (520)
Q Consensus 217 r~~vg~~kVi~~lSGGVDStV~A~Ll~---k--Aig~~l~~vfVD~Gl--lRknE~~~v~~~~~~~~~~~l~~vda~~~F 289 (520)
+.-.-.++|-.|-|||=||||+|-.+. . -.|-+|.-+=||+|+ .|++--+-|..++.+ .++++.++-..+.|
T Consensus 46 ~l~~rge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~-~~lPL~ivs~~dl~ 124 (347)
T KOG2840 46 KLFARGERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQ-YGLPLCIVSYKDLY 124 (347)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHH-CCCCEEEECHHHHH
T ss_conf 86678883132555660277999999984030178841342101003642004299999986142-07863884199972
Q ss_pred HHHHCCCCCHHHHHHHHH------HHHHHHHHHHHHH
Q ss_conf 999668988899998875------6589999999974
Q gi|254780414|r 290 IRKLKNIVDPETKRKVIG------QLFIEVFEEEAKK 320 (520)
Q Consensus 290 l~~L~gv~DPE~KRkiIG------~~Fi~vf~~~a~~ 320 (520)
.+.|--| +=.-|| -||-.||-+++-+
T Consensus 125 ----~~~tmd~-i~~~i~~~~rn~ctfCgv~RrqaL~ 156 (347)
T KOG2840 125 ----GEWTMDE-IVSEIGQEIRNNCTFCGVFRRQALD 156 (347)
T ss_pred ----CCCHHHH-HHHHHHHHHCCCCEEECHHHHHHHH
T ss_conf ----5020888-9999866230460451189888887
No 196
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.51 E-value=0.052 Score=34.57 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=40.1
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCCCCCCCC---CCCHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 8989889972399799998538899999997---53768980899889977899998997
Q gi|254780414|r 39 FKNALDYFKEQNPQAIILSGSPASSLDIDSP---QIPKEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 39 ~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap---~~~~~I~~~~iPILGICyG~QlLa~~ 95 (520)
.+..++++...++++|++.||++.-+-...+ ++-++..+.+.||-.||-|-++|+.+
T Consensus 65 ~~~~~~dv~~~~yDai~iPGG~g~~~l~~d~~~~~li~~~~~~gK~iaaIChgp~~L~~a 124 (180)
T cd03169 65 VTADFDEVDPDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred CCCCHHHCCHHHCCEEEECCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHC
T ss_conf 678767898610999998998228777119799999999998199699778168999876
No 197
>pfam01965 DJ-1_PfpI DJ-1/PfpI family. The family includes the protease PfpI. This domain is also found in transcriptional regulators.
Probab=93.39 E-value=0.052 Score=34.61 Aligned_cols=60 Identities=23% Similarity=0.458 Sum_probs=44.5
Q ss_pred EECCCCCHHHHHHCCCCEEEECCCCCCCCC-CCCCCC---CHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 852898988997239979999853889999-999753---768980899889977899998997
Q gi|254780414|r 36 VIAFKNALDYFKEQNPQAIILSGSPASSLD-IDSPQI---PKEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 36 I~P~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap~~---~~~I~~~~iPILGICyG~QlLa~~ 95 (520)
.+..|.+++++...++++||+.||.....+ ...+.+ -++..+.+.+|.+||-|-.+|+.+
T Consensus 20 ~v~~d~~~~~~~~~~~D~lvipGG~~~~~~l~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~~ 83 (141)
T pfam01965 20 KLRADKTLDDVNADDYDALVIPGGHAAAEDLRDDEKLVKFVKEFYEAGKPIAAICHGPVLLAAA 83 (141)
T ss_pred EEECCCCHHHCCHHHCCEEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCEEEEECHHHHHHHHC
T ss_conf 8967701888895249999996994067664019999999999998399899987668999986
No 198
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.35 E-value=0.11 Score=32.15 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCC---HHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 28989889972399799998538899999997537---68980899889977899998997
Q gi|254780414|r 38 AFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIP---KEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 38 P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~---~~I~~~~iPILGICyG~QlLa~~ 95 (520)
-.|..++++...+++.+||.||+.... ...|.+. ++..+.+.+|-+||-|-++|+.+
T Consensus 48 ~~D~~l~~v~~~~~D~lvlPGG~~~~~-~~~~~l~~~l~~~~~~gk~iaaIC~g~~vLa~a 107 (170)
T cd03140 48 VPDYSLDDLPPEDYDLLILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred ECCCCHHHCCCCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHC
T ss_conf 567586888902177899868875100-249999999999987499099986558999985
No 199
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein. It is possibly part of a superfamily of beta-lactmases..
Probab=92.57 E-value=0.26 Score=29.63 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCCCEEEEEECCCCHH-----HH--HHHHHHHCCCE---EEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 4488699998897057-----88--99888865940---69852898988997239979999853889999999753768
Q gi|254780414|r 5 ERSSKVLIIDFGSQFT-----QL--IARRVRESKVY---CEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKE 74 (520)
Q Consensus 5 ~~~~~IlIlDfGSQyt-----qL--IaRriRelgVy---seI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~ 74 (520)
+-.+-|+|+|-|+.+- .- |++ + +||. --|+|-.+.+.+..+ +++||+||-|. ++ ..---..
T Consensus 20 e~~~ev~i~D~G~~~PRVlIHed~di~~-~--~G~dL~~~~vIPD~~~l~~~~~-kvkgI~~tHGH----~D-HIGav~y 90 (593)
T TIGR00649 20 EVDDEVVIIDAGIRFPRVLIHEDTDIAE-M--LGVDLIEKGVIPDFTYLKENED-KVKGIVITHGH----ED-HIGAVPY 90 (593)
T ss_pred EECCEEEEEECCCCCCCEEEECCCCHHH-H--CCHHHHHCCCCCCCHHHHHHCC-CEEEEEECCCC----CC-CCCHHHH
T ss_conf 8778599982322379646415520354-4--0411432031689616752125-06788970871----00-0122888
Q ss_pred HH-HCCCC-EEEECHHHHHHHHHCCCE
Q ss_conf 98-08998-899778999989970969
Q gi|254780414|r 75 IL-ESNIP-LLGICYGQQIMCQSLGGK 99 (520)
Q Consensus 75 I~-~~~iP-ILGICyG~QlLa~~~GG~ 99 (520)
++ +.+.| |.|-=|++.||-..+-|+
T Consensus 91 L~~~~~~~PiYGt~lt~~L~~~ki~~E 117 (593)
T TIGR00649 91 LLHQYGFPPIYGTPLTIALIKSKIKAE 117 (593)
T ss_pred HHHHCCCCCEECCHHHHHHHHHHHHHH
T ss_conf 986568882404378999999988654
No 200
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=92.27 E-value=0.088 Score=32.97 Aligned_cols=59 Identities=14% Similarity=0.335 Sum_probs=40.3
Q ss_pred ECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC---CCHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 5289898899723997999985388999999975---3768980899889977899998997
Q gi|254780414|r 37 IAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQ---IPKEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 37 ~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~---~~~~I~~~~iPILGICyG~QlLa~~ 95 (520)
+..+.+++++...++++||+.||.+.-.-.+.+. +-++..+.+.||-.||-|-++|+.+
T Consensus 49 v~~d~~l~~~~~~~yD~ivlPGG~g~~~l~~~~~~~~~i~~~~~~~k~iaaIC~gp~~L~~~ 110 (165)
T cd03134 49 VTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred EECCCCHHHCCHHHCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHCCCEEEECCHHHHHHHC
T ss_conf 86786579989622888997898588888529899999999997199299998757877457
No 201
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=92.20 E-value=0.28 Score=29.36 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=58.3
Q ss_pred EEEEE-ECCCCHHHH--HHHHHHHCCCEEEEECCCC---------------CHHHHHHCCCCEEEECCCCCCCC----CC
Q ss_conf 69999-889705788--9988886594069852898---------------98899723997999985388999----99
Q gi|254780414|r 9 KVLII-DFGSQFTQL--IARRVRESKVYCEVIAFKN---------------ALDYFKEQNPQAIILSGSPASSL----DI 66 (520)
Q Consensus 9 ~IlIl-DfGSQytqL--IaRriRelgVyseI~P~~~---------------~~e~i~~~~p~GIILSGGP~SV~----d~ 66 (520)
||+|| .=|.....+ +..++++.|+..+|+.... +++......++++++.||+.++. +.
T Consensus 3 kVaiLv~dg~~~~e~~~~~~al~~aG~~v~via~~~g~v~~~~g~~~~vd~t~~~~~s~~fDAvvipgG~~~~~~L~~~~ 82 (142)
T cd03132 3 KVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSG 82 (142)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCEEECCEEECCCCHHHCCEEEECCCCCCHHHHCCCH
T ss_conf 89999669988899999999999889989999579870775899888054435368964713688438877988864486
Q ss_pred CCCCCCHHHHHCCCCEEEECHHHHHHHHHC
Q ss_conf 997537689808998899778999989970
Q gi|254780414|r 67 DSPQIPKEILESNIPLLGICYGQQIMCQSL 96 (520)
Q Consensus 67 ~ap~~~~~I~~~~iPILGICyG~QlLa~~~ 96 (520)
.+.++-.+.|+-++||-.||-|-++|..+-
T Consensus 83 ~~~~fv~eay~h~KpI~a~~~~~~lL~~ag 112 (142)
T cd03132 83 RALHFVTEAFKHGKPIGAVGEGSDLLEAAG 112 (142)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHCC
T ss_conf 799999999976997999377299999769
No 202
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=91.94 E-value=0.23 Score=29.97 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=83.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC-CCCHHHH
Q ss_conf 036640564047799999986223656999973895515627899998862369857997588999999668-9888999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKN-IVDPETK 302 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~g-v~DPE~K 302 (520)
+|-...|||-|||.+|.+|.|- |=+.+-|-|+-|++-..+-.. +.- +.+|.+-.++.--...|++-.. +.+----
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~kl-gyev~LVTvnFGv~d~~k~A~--~tA-~~lgF~h~vl~Ldr~ile~A~em~iedg~P 77 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKL-GYEVELVTVNFGVLDSWKYAR--ETA-AILGFPHEVLQLDREILEDAVEMIIEDGYP 77 (198)
T ss_pred CEEEEECCCCCHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHH--HHH-HHHCCCCCEECCCHHHHHHHHHHHHHCCCC
T ss_conf 5689844897105899999871-787179998733466406689--999-982997000016889999999999853898
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 98875658999999997439970998646220245420246777630344302320113203202237898738999999
Q gi|254780414|r 303 RKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLL 382 (520)
Q Consensus 303 RkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~l 382 (520)
|..|-..-=...|-.|.. ..+.+|-||=..|-.---+. +.+. .|-.+++-.-+-||.-|=+--||.|
T Consensus 78 ~~aIq~iH~~alE~~A~r--~~~~iaDGTRRDDrvP~ls~-----~~~q------SLEdR~nv~Yi~PL~G~G~kti~~L 144 (198)
T COG2117 78 RNAIQYIHEMALEALASR--EVDRIADGTRRDDRVPKLSR-----SEAQ------SLEDRLNVQYIRPLLGLGYKTIRRL 144 (198)
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCH-----HHHH------HHHHHCCCEEECCCCCCCHHHHHHH
T ss_conf 508899999999999877--78887578744566764249-----8875------1887518645530334467899999
Q ss_pred HHHH
Q ss_conf 9981
Q gi|254780414|r 383 GKEL 386 (520)
Q Consensus 383 g~~L 386 (520)
...+
T Consensus 145 v~~~ 148 (198)
T COG2117 145 VSAI 148 (198)
T ss_pred HHHH
T ss_conf 8877
No 203
>pfam01902 ATP_bind_4 ATP-binding region. This family of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.In some members of this family, this domain is associated with pfam01042.
Probab=91.30 E-value=1.3 Score=24.55 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=64.6
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC--CEEEEEECCC--CCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCH
Q ss_conf 0366405640477999999862236--5699997389--55156278999988623698579975889999996689888
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGI--NLTCVLVDHG--FMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDP 299 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~--~l~~vfVD~G--llRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DP 299 (520)
|+++..|||=||+-|.....+. .+ -|.++.-.++ .|=..-..++.+...+-+|+++..+..+ |.
T Consensus 2 K~~~l~SGGKDS~~Al~~a~~~-~~v~~L~t~~~~~~ds~~~H~~~~~l~~~qA~algiPl~~~~~~--------~~--- 69 (219)
T pfam01902 2 KVAALYSGGKDSNYALYWALKE-IEVPYLVSMKSENKESYMFHEPNLHLTKLLAEALGIPIIKLYTK--------GE--- 69 (219)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC--------CC---
T ss_conf 3999972869999999999871-98379999963799810261578899999999759968999679--------86---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 9999887565899999999743997099864622024542024677763034430232011320320223789
Q gi|254780414|r 300 ETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 300 E~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
+ +.+.+-+.+..+++ +++-++-|-|+-+-.-. .+-.+-+.++++.+.||=
T Consensus 70 ~-------e~~~~~L~~~l~~~-~i~~vv~GdI~s~~qr~---------------~~e~~c~~lgl~~~~PLW 119 (219)
T pfam01902 70 E-------EKEVEDLAGFLESL-DVDALVAGAIYSEYQKS---------------RIESVCRELGLKPFAPLW 119 (219)
T ss_pred H-------HHHHHHHHHHHHHC-CCCEEEECCCCCHHHHH---------------HHHHHHHHCCCEEEECCC
T ss_conf 1-------79999999999875-98699998603688999---------------999999972988971034
No 204
>KOG1706 consensus
Probab=91.23 E-value=0.73 Score=26.38 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=60.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH----------
Q ss_conf 4403664056404779999998622365699997389551562789999886236985799758899999----------
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR---------- 291 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~---------- 291 (520)
.++|++|-|||.|.|+.-+-|.. -|=.++|.+-|-|- +-+.++-.+--.+...-++.+.|.++.|.+
T Consensus 5 ~~~vVLAySGgLDTscil~WLke-qGyeViay~AnvGQ--~edfe~ar~kAlk~Gakk~~~ed~~~eFvedfi~Pa~qs~ 81 (412)
T KOG1706 5 KKSVVLAYSGGLDTSCILAWLKE-QGYEVIAYLANVGQ--KEDFEEARKKALKSGAKKVVVEDVREEFVEDFIWPALQSS 81 (412)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-CCCEEEEEECCCCC--HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCHHHHHHC
T ss_conf 74599995388672343588886-29658984001562--6668999975331276079861315888760201644311
Q ss_pred ------HHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf ------96689888999988756589999999
Q gi|254780414|r 292 ------KLKNIVDPETKRKVIGQLFIEVFEEE 317 (520)
Q Consensus 292 ------~L~gv~DPE~KRkiIG~~Fi~vf~~~ 317 (520)
.|-|.+ --|-+|-+.-|+|..++
T Consensus 82 a~YEd~YLLGTS---laRp~ia~~qv~va~~e 110 (412)
T KOG1706 82 ALYEDRYLLGTS---LARPVIAKAQVDVAQRE 110 (412)
T ss_pred CHHHCEEEECCC---CCCCHHHHHHHHHHHHC
T ss_conf 210101342244---44313433353577651
No 205
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=90.74 E-value=0.3 Score=29.14 Aligned_cols=217 Identities=20% Similarity=0.270 Sum_probs=111.4
Q ss_pred HHHHHHHHC-CC-CEEEEECCCCHHHHHHHHHHHHCCC--------CEEEEEECCCCCCC------CCHHHHHHHHHHCC
Q ss_conf 999976504-44-0366405640477999999862236--------56999973895515------62789999886236
Q gi|254780414|r 213 VSRIKEQVG-NE-RVICAVSGGVDSTVAAFLIYEAIGI--------NLTCVLVDHGFMRK------NEVENIISLFKGYP 276 (520)
Q Consensus 213 i~~Ir~~vg-~~-kVi~~lSGGVDStV~A~Ll~kAig~--------~l~~vfVD~GllRk------nE~~~v~~~~~~~~ 276 (520)
+++||+..- |+ --+.|.|||=|||++..|+-.||-. .++-|.-||+.=-- +.+-+-++.+.+..
T Consensus 2 ~~ei~~~Y~~d~~PWvIGySGGKDSTavLqLvw~Al~~Lp~e~r~K~v~VIssDTlVEnP~V~~~v~~~L~~i~~~a~~~ 81 (447)
T TIGR03183 2 IEEIQELYCADDIPWVIGYSGGKDSTAVLQLVWNALSELPPEQRTKKIHVISTDTLVENPIVAAWVNVSLERMQEAAQKQ 81 (447)
T ss_pred HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 38999998537998799758773999999999999984788757688899979987557799999999999999999974
Q ss_pred CCCEEEE----EHHHHHHHHHCCCCC--HHHH-------HHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCC
Q ss_conf 9857997----588999999668988--8999-------9887-565899999999743997099864622024542024
Q gi|254780414|r 277 NFPLRVV----DASERFIRKLKNIVD--PETK-------RKVI-GQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISF 342 (520)
Q Consensus 277 ~~~l~~v----da~~~Fl~~L~gv~D--PE~K-------RkiI-G~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~ 342 (520)
++++... +-.+.|.-.|-|=-= |..+ =||= -+.||+- .+.+. +.--|+-||=+. ||...
T Consensus 82 ~LPi~~~~~~P~~~dtFWvnlIGrGYPaP~~~FRWCTdrLKI~P~~~fi~~---~v~~~-ge~ilvLGtR~~---ES~~R 154 (447)
T TIGR03183 82 GLPIEPHRLTPAIEDTFWVNLIGKGYPAPRQKFRWCTDRLKISPSNTFIRD---KVAAN-GEVILVLGTRKN---ESQAR 154 (447)
T ss_pred CCCCEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHH---HHHCC-CCEEEEEECCHH---HHHHH
T ss_conf 998236893378544300010346307999876525576636828999998---65214-968999956527---77999
Q ss_pred CCCCCCEEEEEECCCCHHHHH----C---CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHH
Q ss_conf 677763034430232011320----3---202237898738999999998199988942688898311122100036789
Q gi|254780414|r 343 FGGPSSIIKSHHNVGGLPEHM----D---MKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEER 415 (520)
Q Consensus 343 ~~~~~~~IKsHHNvgglp~~~----~---~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~ 415 (520)
|.+|+.|-. ++.-+.+ . --+.-|++++--|||=..=.. +|-| -|.-..+-
T Consensus 155 ----a~~i~k~e~-~~~~~~ls~h~~l~n~~vy~PI~dws~ddVW~yL~~------------~~~P------wg~~n~~L 211 (447)
T TIGR03183 155 ----AAVMEKHEG-GSTRDRLSRNSSLPNSWVYTPIEDWSNDDVWMYLLQ------------NPNP------WGYDNHDL 211 (447)
T ss_pred ----HHHHHHHHC-CCCHHHCCCCCCCCCCEEECCHHHCCHHHHHHHHCC------------CCCC------CCCCHHHH
T ss_conf ----999998644-670421276888888379730674764089998633------------8998------89985999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHH-HHEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 99999999999999986465333220-1045568632421599854144799963216877558
Q gi|254780414|r 416 INILRESDAIYREEIHKAGIYRKIWQ-AFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTA 478 (520)
Q Consensus 416 ~~i~r~ad~i~~~~l~~~~ly~~~~q-~~avllp~~svGv~GD~R~y~~~~~lr~v~s~d~mta 478 (520)
.. +|..... .=|-+.-.+|..--|+.|-=-|+|.+ |.---.|+|
T Consensus 212 ~~-----------------lY~~At~~gECplv~d~stpSCG~SRFGCWvCTv--V~~DKSm~~ 256 (447)
T TIGR03183 212 FK-----------------LYQGATADGECPLVVDKSTPSCGDSRFGCWVCTV--VSEDKSMNA 256 (447)
T ss_pred HH-----------------HHHCCCCCCCCCEEECCCCCCCCCCCCCCEEEEE--ECCHHHHHH
T ss_conf 99-----------------9740678997763547988886677667367777--632273999
No 206
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=90.53 E-value=0.21 Score=30.31 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=38.6
Q ss_pred CHHHHHHCCCCEEEECCC-CCCCCCCCCC---CCCHHHHHCCCCEEEECHHHHHHHHHCC
Q ss_conf 988997239979999853-8899999997---5376898089988997789999899709
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGS-PASSLDIDSP---QIPKEILESNIPLLGICYGQQIMCQSLG 97 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGG-P~SV~d~~ap---~~~~~I~~~~iPILGICyG~QlLa~~~G 97 (520)
..+.....+++++++.|| ...-+....+ .+-++.++.+.||..||-|-++|+.+-.
T Consensus 58 ~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ 117 (188)
T COG0693 58 AFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGL 117 (188)
T ss_pred HCCCCCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCC
T ss_conf 116578135989998899752322135178999999999769989998468899874768
No 207
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=90.41 E-value=0.21 Score=30.23 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=43.2
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCCCC-CCCC---CCCHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 898988997239979999853889999-9997---53768980899889977899998997
Q gi|254780414|r 39 FKNALDYFKEQNPQAIILSGSPASSLD-IDSP---QIPKEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 39 ~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap---~~~~~I~~~~iPILGICyG~QlLa~~ 95 (520)
...+++++...++++|++.||+...+| .+++ ++-.++++.+.||-.||.|-..|..+
T Consensus 79 ~~~~l~~v~~~~ydai~~pGG~g~m~dl~~~~~l~~l~~~~~~~gk~vaaiCHGp~~L~~~ 139 (221)
T cd03141 79 NTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred CCCCHHHCCHHHCCEEEECCCCCHHHHHHCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf 8789678998788389989985458774416999999999997498599976307988750
No 208
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=89.12 E-value=1.5 Score=24.22 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHH
Q ss_conf 14067899999999765044-4036640564047799999986
Q gi|254780414|r 203 WVMSSYHKEIVSRIKEQVGN-ERVICAVSGGVDSTVAAFLIYE 244 (520)
Q Consensus 203 W~~~~~~~~~i~~Ir~~vg~-~kVi~~lSGGVDStV~A~Ll~k 244 (520)
...+|..+-.+++|+=...+ .+|+...|||-||+|.--|++.
T Consensus 7 y~~~nV~eA~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~ 49 (407)
T COG3969 7 YLDENVLEAAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAE 49 (407)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 4740499999999999884388389992378740589999999
No 209
>KOG0571 consensus
Probab=88.47 E-value=0.69 Score=26.56 Aligned_cols=111 Identities=15% Similarity=0.230 Sum_probs=60.1
Q ss_pred HHHHHHH-HHCCCCEEEEECCCCHHHHHHHHHHHHCCC-------CEEEEEECCCCCC---CCCHHHHHHHHHHCCCCCE
Q ss_conf 9999976-504440366405640477999999862236-------5699997389551---5627899998862369857
Q gi|254780414|r 212 IVSRIKE-QVGNERVICAVSGGVDSTVAAFLIYEAIGI-------NLTCVLVDHGFMR---KNEVENIISLFKGYPNFPL 280 (520)
Q Consensus 212 ~i~~Ir~-~vg~~kVi~~lSGGVDStV~A~Ll~kAig~-------~l~~vfVD~GllR---knE~~~v~~~~~~~~~~~l 280 (520)
..+.+++ -.+|...=|.||||.|||..|+...|-+.+ +|+..-| ||=- .--+.+|-+.+.. ..-
T Consensus 214 ~~~aV~KRLM~d~p~GvLLSGGLDSSLvAsia~R~lk~~~~~~~~~lhsFaI--Gle~SPDL~aarkVAd~igt---~Hh 288 (543)
T KOG0571 214 LEKAVRKRLMTDVPFGVLLSGGLDSSLVASIAARELKKAQAARGSKLHSFAI--GLEDSPDLLAARKVADFIGT---IHH 288 (543)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCHHHHHHHHHHHHHCC---CCE
T ss_conf 9999999863168615895077318999999999998766412787547885--28998537888999987488---523
Q ss_pred EEEEHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 99758899999966898------8899998875658999999997439970998646
Q gi|254780414|r 281 RVVDASERFIRKLKNIV------DPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGT 331 (520)
Q Consensus 281 ~~vda~~~Fl~~L~gv~------DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT 331 (520)
...-..+.=+++|..|. |+-.=|--++ +-...+.+++++ +++++-|-
T Consensus 289 e~~ft~qegidal~eVI~hLETYDvttIRastp---myLlsr~Ikk~g-vkmvlSGE 341 (543)
T KOG0571 289 EHTFTIQEGIDALDEVIYHLETYDVTTIRASTP---MYLLSRKIKKLG-VKMVLSGE 341 (543)
T ss_pred EEEECHHHHHHHHHHHHEEEECCCCCEEECCCC---HHHHHHHHHHCC-EEEEEECC
T ss_conf 899758887778887742410134415861774---678999997655-28998157
No 210
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=87.13 E-value=1 Score=25.29 Aligned_cols=73 Identities=21% Similarity=0.398 Sum_probs=46.3
Q ss_pred CCEEEEE-------------ECCCCHHHHHHHHHHHCCCEEEEECCCC------------------CHHH----HHHCCC
Q ss_conf 8869999-------------8897057889988886594069852898------------------9889----972399
Q gi|254780414|r 7 SSKVLII-------------DFGSQFTQLIARRVRESKVYCEVIAFKN------------------ALDY----FKEQNP 51 (520)
Q Consensus 7 ~~~IlIl-------------DfGSQytqLIaRriRelgVyseI~P~~~------------------~~e~----i~~~~p 51 (520)
+.+|+|| ||++ . | -+..+|++|.-+.++.||- +.|. +...+|
T Consensus 573 Kk~~lvlGSGp~RIGqgvEFDYc~-V-h-~~~aLr~~Gye~ImiN~NPETVSTDyD~sDrLYFEplt~E~Vm~I~e~E~~ 649 (1089)
T TIGR01369 573 KKKVLVLGSGPNRIGQGVEFDYCC-V-H-AVLALREAGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKP 649 (1089)
T ss_pred CCEEEEECCCCEECCCCEEEHHHH-H-H-HHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCEEHEEECCC
T ss_conf 856899878451406631205678-9-9-999998729959999778997436666510115876350310011000586
Q ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHCC-CCEEEECH
Q ss_conf 7999985388999999975376898089-98899778
Q gi|254780414|r 52 QAIILSGSPASSLDIDSPQIPKEILESN-IPLLGICY 87 (520)
Q Consensus 52 ~GIILSGGP~SV~d~~ap~~~~~I~~~~-iPILGICy 87 (520)
+|||.+=|=+ -+..+.+++-+.+ +||||-=.
T Consensus 650 ~GVIVq~GGQ-----tp~nlA~~L~~~GG~~iLGTS~ 681 (1089)
T TIGR01369 650 EGVIVQFGGQ-----TPLNLAKELEEAGGVPILGTSP 681 (1089)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCCEEECCCH
T ss_conf 6799974873-----2678999999708931736885
No 211
>PRK11574 hypothetical protein; Provisional
Probab=86.90 E-value=0.49 Score=27.62 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHCCCCEEEECCC-CCCCCCCCCCCC---CHHHHHCCCCEEEECHHHHH-HHH
Q ss_conf 2898988997239979999853-889999999753---76898089988997789999-899
Q gi|254780414|r 38 AFKNALDYFKEQNPQAIILSGS-PASSLDIDSPQI---PKEILESNIPLLGICYGQQI-MCQ 94 (520)
Q Consensus 38 P~~~~~e~i~~~~p~GIILSGG-P~SV~d~~ap~~---~~~I~~~~iPILGICyG~Ql-La~ 94 (520)
..|..++++...++++|||.|| |..-+-.+++.+ -++..+.+.+|-.||-|=|+ ++.
T Consensus 54 ~aD~~l~~v~~~~yD~ivlPGG~~ga~~L~~~~~v~~~lk~~~~~gK~iAAICAaP~~vL~~ 115 (196)
T PRK11574 54 LADAPLVEVADGEYDVIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred ECCCCHHHCCCCCCCEEECCCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 57867777782558889917880379998739899999999998799199982406999987
No 212
>KOG2303 consensus
Probab=86.49 E-value=0.43 Score=28.02 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=23.4
Q ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 997650444036640564047799999986
Q gi|254780414|r 215 RIKEQVGNERVICAVSGGVDSTVAAFLIYE 244 (520)
Q Consensus 215 ~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~k 244 (520)
.+| ..|-.--++-|||||||+-+|++++-
T Consensus 343 yLR-Rs~~aGfflPLSGG~DSsatA~iV~s 371 (706)
T KOG2303 343 YLR-RSGQAGFFLPLSGGVDSSATAAIVYS 371 (706)
T ss_pred HHH-HCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 998-63887447764788640589999999
No 213
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.55 E-value=1.5 Score=24.12 Aligned_cols=70 Identities=31% Similarity=0.475 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHCCCEE------------EEECCCCCHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCHHHHH--CCCCE
Q ss_conf 05788998888659406------------9852898988997239-979999853889999999753768980--89988
Q gi|254780414|r 18 QFTQLIARRVRESKVYC------------EVIAFKNALDYFKEQN-PQAIILSGSPASSLDIDSPQIPKEILE--SNIPL 82 (520)
Q Consensus 18 QytqLIaRriRelgVys------------eI~P~~~~~e~i~~~~-p~GIILSGGP~SV~d~~ap~~~~~I~~--~~iPI 82 (520)
-+.+|.+-.+|+..-|- ++.++-..+++....| .+.++|-||-+-..-.-.|.-.+++++ .+.|+
T Consensus 40 PFAeL~~favRDke~~fipd~d~ek~rkl~~~d~G~ql~e~e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkl 119 (154)
T COG4090 40 PFAELLAFAVRDKEQYFIPDLDFEKARKLELTDHGYQLGEREELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKL 119 (154)
T ss_pred CHHHHHHHHHHCHHEEECCCCCHHHHHEEEEECCCEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 48999888850320044677586673224651243542775666644589997564467678997999999984389865
Q ss_pred EEECH
Q ss_conf 99778
Q gi|254780414|r 83 LGICY 87 (520)
Q Consensus 83 LGICy 87 (520)
.|+||
T Consensus 120 iGvCf 124 (154)
T COG4090 120 IGVCF 124 (154)
T ss_pred EEEEH
T ss_conf 87518
No 214
>PRK07334 threonine dehydratase; Provisional
Probab=85.16 E-value=3.2 Score=21.79 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHCCCCEEEEECCC-CHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH-
Q ss_conf 7650444036640564-047799999986223-6569999738955156278999988623698579975889999996-
Q gi|254780414|r 217 KEQVGNERVICAVSGG-VDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKL- 293 (520)
Q Consensus 217 r~~vg~~kVi~~lSGG-VDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L- 293 (520)
+....+++|.|-|||| +|.+...-++.|++= +...+.|.=+===|.+.-.++.+.+.+ .+-|+.-++....|.+.-
T Consensus 287 ~~~~~gk~Vv~vlsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~ipd~PG~l~~~~~~i~~-~~ani~~i~h~r~~~~~~~ 365 (399)
T PRK07334 287 PERFRGRKVGLVLCGGNIDTRLLANVLLRGLVRAGRLARLRVDIRDRPGALAKVTALIGE-AGANIIEVHHQRLFTTLPA 365 (399)
T ss_pred HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHH-CCCCEEEEEEEECCCCCCC
T ss_conf 166469819999686886988999999998885599899999888899679999999821-7997699998871577887
Q ss_pred --------CCCCCHHHHHHHHH
Q ss_conf --------68988899998875
Q gi|254780414|r 294 --------KNIVDPETKRKVIG 307 (520)
Q Consensus 294 --------~gv~DPE~KRkiIG 307 (520)
-.+.|+|...+++.
T Consensus 366 ~~~~v~~~~Et~~~~h~~~l~~ 387 (399)
T PRK07334 366 KGAELELVIETRDAAHIQEVMA 387 (399)
T ss_pred CEEEEEEEEEECCHHHHHHHHH
T ss_conf 7389999999399999999999
No 215
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=82.68 E-value=4 Score=21.08 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=92.6
Q ss_pred CEEEEE-----ECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCC---CCCCCCHHH---H
Q ss_conf 869999-----88970578899888865940698528989889972399799998538899999---997537689---8
Q gi|254780414|r 8 SKVLII-----DFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI---DSPQIPKEI---L 76 (520)
Q Consensus 8 ~~IlIl-----DfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~---~ap~~~~~I---~ 76 (520)
.||+|- +|- |-+++ +.+|++|. ||++++--.++-...+.++|-|.||-=-++.+ ++....+.| .
T Consensus 246 ~rIAVA~D~AF~Fy--Y~~nl-~~Lr~~GA--elv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~ 320 (451)
T COG1797 246 VRIAVARDAAFNFY--YPENL-ELLREAGA--ELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFA 320 (451)
T ss_pred CEEEEEECCHHCCC--CHHHH-HHHHHCCC--EEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 36999854510003--29999-99997797--799857867777997788899689774889999844799999999998
Q ss_pred HCCCCEEEECHHHHHHHHHC---CCEEE----------ECCCC--CCCEEEEEECCCCCCCCC-CCCCCCCEEEEEECCC
Q ss_conf 08998899778999989970---96999----------86986--610366752388622278-7266553368600220
Q gi|254780414|r 77 ESNIPLLGICYGQQIMCQSL---GGKTK----------NSQSR--EFGRAFIEIKKNCSLLKG-MWEKGSKQQVWMSHGD 140 (520)
Q Consensus 77 ~~~iPILGICyG~QlLa~~~---GG~V~----------~~~~~--EyG~~~I~i~~~~~lf~g-l~~~~~~~~VwmSH~D 140 (520)
..+.||+|=|=|+-.|+..+ .|... ++..| -.|+........+.+... ..-..-.+ |.-
T Consensus 321 ~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~~~~~~~d~~~~~~G~~irGHEF-----HyS 395 (451)
T COG1797 321 AAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQALGYREAEAVDDTLLLRAGEKIRGHEF-----HYS 395 (451)
T ss_pred HCCCCEEEECCCCEEEHHHEECCCCCEEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-----EEE
T ss_conf 769945885155112101204268966543300033013543343166069984377634568863663210-----300
Q ss_pred HHHCCC-CCCCEEECCCCC---CEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf 110124-442112323983---178898635001124652122215202577998755010
Q gi|254780414|r 141 QVEHIP-EGFEVIASSDST---PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 141 ~V~~lP-~gf~viA~S~~~---~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
.+...+ ..+-.-.....+ --.++... +..+--.| .|-.....+..+|+ .-|
T Consensus 396 ~~~~~~~~~~a~~~~~g~g~~~~~~G~~~g--nv~asY~H---~H~~s~~~~~~~~v-~~~ 450 (451)
T COG1797 396 RLITEEDAEPAFRVRRGDGIDNGRDGYRSG--NVLASYLH---LHFASNPAFAARFV-AAA 450 (451)
T ss_pred ECCCCCCCCEEEEEECCCCCCCCCCCEEEC--CEEEEEEE---EECCCCHHHHHHHH-HHH
T ss_conf 123577675103553255766665403667--76799875---51155889999999-731
No 216
>pfam08497 Radical_SAM_N Radical SAM N-terminal. This domain tends to occur to the N-terminus of the pfam04055 domain in hypothetical bacterial proteins.
Probab=80.90 E-value=3 Score=22.05 Aligned_cols=98 Identities=23% Similarity=0.376 Sum_probs=63.9
Q ss_pred HHCCCHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHHHHCCCCEE
Q ss_conf 22152025779987550106------4411140678999999997650444036640564-0477999999862236569
Q gi|254780414|r 179 VVHTVGGSQLIDNFVHHVAG------IQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGG-VDSTVAAFLIYEAIGINLT 251 (520)
Q Consensus 179 V~hT~~G~~iL~NFl~~Ic~------~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGG-VDStV~A~Ll~kAig~~l~ 251 (520)
|.|--+|.-|+..+| +-.| +.++|+... .++ +.|.-+..+|+|+| +||-|+-.-..|-. |-.
T Consensus 28 VDHPsFG~AiIgR~L-e~~GyrVgIIaQPdw~~~~-------df~-~lG~PrLffgVsaGn~DSMVn~YTa~kK~--R~~ 96 (298)
T pfam08497 28 VDHPSFGMAIIGRVL-EAQGFRVGIIAQPDWRSDE-------DFK-RLGRPRLFFGVTAGNMDSMVNHYTADKKL--RSD 96 (298)
T ss_pred CCCCCHHHHHHHHHH-HHCCCEEEEEECCCCCCHH-------HHH-HHCCCCEEEEECCCCHHHHHHHHCCCCCC--CCC
T ss_conf 568530689999999-9869659897189989847-------899-72998479886366488888761444443--454
Q ss_pred EEEECCCCC--CCCCHHHH-----HHHHHHCCCCCEEE--EEHHHHHH
Q ss_conf 999738955--15627899-----99886236985799--75889999
Q gi|254780414|r 252 CVLVDHGFM--RKNEVENI-----ISLFKGYPNFPLRV--VDASERFI 290 (520)
Q Consensus 252 ~vfVD~Gll--RknE~~~v-----~~~~~~~~~~~l~~--vda~~~Fl 290 (520)
.-|--.|-. |-+-+--| .+.|+ +++++. +.||-|=+
T Consensus 97 DaYtPgG~~g~RPDRA~iVY~n~~r~~f~---~vPiiiGGIEASLRR~ 141 (298)
T pfam08497 97 DAYTPGGEGGKRPDRAVIVYTNRIREAFK---DVPVVIGGIEASLRRF 141 (298)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEECCHHHHHHHH
T ss_conf 68698997888987025799999999869---9998971225766655
No 217
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=80.79 E-value=2.1 Score=23.05 Aligned_cols=55 Identities=15% Similarity=0.353 Sum_probs=35.6
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHH---HHCCCCEEEECHHHHHHHHH
Q ss_conf 8989889972399799998538899999997537689---80899889977899998997
Q gi|254780414|r 39 FKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEI---LESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 39 ~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I---~~~~iPILGICyG~QlLa~~ 95 (520)
.+..+++. ..++-+|+.||+........|.+..++ ...+..+.|||-|..+||.+
T Consensus 55 ~d~~~~~~--~~~D~livpgg~~~~~~~~~~~l~~~L~~~~~~~~~l~~ictG~~~LA~a 112 (187)
T cd03137 55 ADAGLDAL--AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCHHHC--CCCCEEEECCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHC
T ss_conf 37653345--64699998898861102599999999999975386688753140988745
No 218
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=80.72 E-value=3.2 Score=21.78 Aligned_cols=57 Identities=7% Similarity=0.218 Sum_probs=36.5
Q ss_pred ECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCH---HHHHCCCCEEEECHHHHHHHHH
Q ss_conf 5289898899723997999985388999999975376---8980899889977899998997
Q gi|254780414|r 37 IAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPK---EILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 37 ~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~---~I~~~~iPILGICyG~QlLa~~ 95 (520)
+..+.++++. .+++-+|+.||+........|.+.. .....+..+.+||-|.-+||.+
T Consensus 51 v~~d~~~~~~--~~~D~lvvpGg~~~~~~~~~~~l~~~Lr~~~~~g~~i~siCtGa~~LA~a 110 (183)
T cd03139 51 VLPDTSFADP--PDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred EECCCCHHHC--CCCCEEEECCCCCHHHHCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
T ss_conf 9605884466--75899998799874530489899999999876198389873767999974
No 219
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=79.95 E-value=4.2 Score=20.97 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=37.1
Q ss_pred CCEEEEEE--CCCCHH-------HHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf 88699998--897057-------8899888865940698528989889972399799998538899
Q gi|254780414|r 7 SSKVLIID--FGSQFT-------QLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASS 63 (520)
Q Consensus 7 ~~~IlIlD--fGSQyt-------qLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV 63 (520)
.+++|+|| ||+=-. .-+-+=..|..+.|.++.||.+-..+... .-|.|+.||.|-
T Consensus 132 RP~~LlLDEPFGALDAlTr~~LQe~L~~I~~e~~~T~~MvTHDvDEAllLsD--R~VMlTnGP~a~ 195 (230)
T TIGR01184 132 RPKVLLLDEPFGALDALTRGNLQEELLQIVEEARVTVVMVTHDVDEALLLSD--RVVMLTNGPAAK 195 (230)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC--CEEEEECCCCCC
T ss_conf 7601231087405667526889999999873169748998524457888735--102430777422
No 220
>KOG2764 consensus
Probab=79.14 E-value=2.3 Score=22.89 Aligned_cols=62 Identities=23% Similarity=0.304 Sum_probs=40.1
Q ss_pred EEECCCCCHHHHHHCCCCEEEECCC-CCCCCCCCCCCC---CHHHHHCCCCEEEECHHHHHHHHHCCC
Q ss_conf 9852898988997239979999853-889999999753---768980899889977899998997096
Q gi|254780414|r 35 EVIAFKNALDYFKEQNPQAIILSGS-PASSLDIDSPQI---PKEILESNIPLLGICYGQQIMCQSLGG 98 (520)
Q Consensus 35 eI~P~~~~~e~i~~~~p~GIILSGG-P~SV~d~~ap~~---~~~I~~~~iPILGICyG~QlLa~~~GG 98 (520)
.++|-+ .+.+....+++.|||.|| |.+.+-.+.+.+ .++-.+.+.+|..||-|- +++.+-+|
T Consensus 53 ~~~~d~-~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap-~~al~a~g 118 (247)
T KOG2764 53 HILPDN-ALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAP-LTALAAHG 118 (247)
T ss_pred EECCCC-CCHHHCCCCCCEEEECCCCHHHHHHHHCHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCC
T ss_conf 762553-1012113566689946996056665306889999999875299699862056-98974165
No 221
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=78.97 E-value=1.2 Score=24.80 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=42.8
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCCCC-CCCC---CCCHHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 898988997239979999853889999-9997---53768980899889977899998997
Q gi|254780414|r 39 FKNALDYFKEQNPQAIILSGSPASSLD-IDSP---QIPKEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 39 ~~~~~e~i~~~~p~GIILSGGP~SV~d-~~ap---~~~~~I~~~~iPILGICyG~QlLa~~ 95 (520)
...+++++...++++|.+.||....+| .+++ ++-.++++.+.||-.||-|-=.|+.+
T Consensus 83 ~t~~l~~v~~~~YdaVf~pGGhG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpaaLl~~ 143 (231)
T cd03147 83 NIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred CCCCHHHCCHHHCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHC
T ss_conf 7689568898782599988988530324239999999999997599799980688997616
No 222
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=77.82 E-value=2.3 Score=22.82 Aligned_cols=10 Identities=30% Similarity=0.212 Sum_probs=3.9
Q ss_pred CEEEEEECCC
Q ss_conf 5699997389
Q gi|254780414|r 249 NLTCVLVDHG 258 (520)
Q Consensus 249 ~l~~vfVD~G 258 (520)
.-.++.|+-|
T Consensus 91 daV~~~v~~G 100 (235)
T cd00958 91 DAVGVTVYVG 100 (235)
T ss_pred CEEEEEEECC
T ss_conf 6799998689
No 223
>PRK08198 threonine dehydratase; Provisional
Probab=76.11 E-value=6.4 Score=19.68 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=59.3
Q ss_pred HHHHCCCCEEEEECCC-CHHHHHHHHHHHHC-CC-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHH-
Q ss_conf 7650444036640564-04779999998622-36-56999973895515627899998862369857997588999999-
Q gi|254780414|r 217 KEQVGNERVICAVSGG-VDSTVAAFLIYEAI-GI-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRK- 292 (520)
Q Consensus 217 r~~vg~~kVi~~lSGG-VDStV~A~Ll~kAi-g~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~- 292 (520)
+....+++|+|-+||| +|.++.+-.+.|++ ++ |+..+.|.- -=|-+.-.++.+.+.+. +-|+.-++....|..-
T Consensus 293 ~~~~~gk~Vv~ilsGGNiD~~~l~~i~er~l~~~gr~~~~~v~i-~d~PG~l~~~~~~i~~~-~anI~~i~h~R~~~~~~ 370 (406)
T PRK08198 293 KVKVRGKKVVAVLSGGNIDVLLLSRVIERGLVAAGRYLKLRVEL-PDRPGQLAKLLSIIAEL-RANVIDVDHDRFSPGLR 370 (406)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHHHHHHHC-CCCEEEEEEEECCCCCC
T ss_conf 73347984999972578798999999999877659979999982-78996799999999757-99379999887257788
Q ss_pred --------HCCCCCHHHHHHHHHH
Q ss_conf --------6689888999988756
Q gi|254780414|r 293 --------LKNIVDPETKRKVIGQ 308 (520)
Q Consensus 293 --------L~gv~DPE~KRkiIG~ 308 (520)
--.+.|+|..+.++..
T Consensus 371 ~~~~~v~~~iEt~~~~h~~~i~~~ 394 (406)
T PRK08198 371 LGEVEVELTLETRGPEHIDEILAA 394 (406)
T ss_pred CCEEEEEEEEEECCHHHHHHHHHH
T ss_conf 664899999992999999999999
No 224
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.65 E-value=6.5 Score=19.60 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=44.8
Q ss_pred EEEEECCCCH----HHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9999889705----788998888659406985289898-------89972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQF----TQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQy----tqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
|++=|+..-| -.-|.+..++.|....+.+.+.+. +.+...+++|+|+.|... ..+.....+.+.
T Consensus 4 vivp~~~n~f~~~~~~gi~~~a~~~gy~lll~~t~~~~~~e~~~i~~l~~~~vDGiIi~~~~~-----~~~~~~~~l~~~ 78 (268)
T cd06289 4 LVINDLTNPFFAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAG-----TSPDLLKRLAES 78 (268)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----CCHHHHHHHHHC
T ss_conf 997899759999999999999998699899995899989999999999965999899946888-----999999999975
Q ss_pred CCCEEEEC
Q ss_conf 99889977
Q gi|254780414|r 79 NIPLLGIC 86 (520)
Q Consensus 79 ~iPILGIC 86 (520)
++|+.-|+
T Consensus 79 ~iPvV~i~ 86 (268)
T cd06289 79 GIPVVLVA 86 (268)
T ss_pred CCCEEEEC
T ss_conf 99899836
No 225
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=75.64 E-value=6.5 Score=19.60 Aligned_cols=71 Identities=14% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCEEEEEEC-CCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC--CCCEE
Q ss_conf 886999988-970578899888865940698528989889972399799998538899999997537689808--99889
Q gi|254780414|r 7 SSKVLIIDF-GSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES--NIPLL 83 (520)
Q Consensus 7 ~~~IlIlDf-GSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~--~iPIL 83 (520)
.+|++++|- +..|+.....+|++ ++ ...+++-||+.= .++|.-...+.+++. +.+|.
T Consensus 42 deK~aLIDtv~~~f~~e~l~~L~~------~i---------d~~~IDYIIvnH-----~EpDHSGsL~~Lle~~P~~~Iv 101 (479)
T PRK05452 42 EEKNVLIDTVDHKFSREFVQNLRM------EI---------DLADIDYIVINH-----AEEDHAGALTELMAQIPDTPIY 101 (479)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHH------HC---------CCCCCCEEEECC-----CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 898899929976289999999997------45---------966798899689-----9975476899999988999999
Q ss_pred EECHHHHHHHHHCC
Q ss_conf 97789999899709
Q gi|254780414|r 84 GICYGQQIMCQSLG 97 (520)
Q Consensus 84 GICyG~QlLa~~~G 97 (520)
+-=-|...|...+.
T Consensus 102 ~s~~a~~~l~~~~~ 115 (479)
T PRK05452 102 CTANAIDSINGHHH 115 (479)
T ss_pred ECHHHHHHHHHHHC
T ss_conf 87899999998527
No 226
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=74.89 E-value=6.8 Score=19.47 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=40.3
Q ss_pred CCEEEEEEC-CCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC--CCCEE
Q ss_conf 886999988-970578899888865940698528989889972399799998538899999997537689808--99889
Q gi|254780414|r 7 SSKVLIIDF-GSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES--NIPLL 83 (520)
Q Consensus 7 ~~~IlIlDf-GSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~--~iPIL 83 (520)
.++++++|- ...|++.-..+|++ +++ ..+++=||+.- .++|.-..-+.+++. +..|.
T Consensus 40 ~ek~aLiDtv~~~f~~e~l~~l~~------vi~---------~~~IdYiVvnH-----~EPDHsg~l~~ll~~~p~~~vv 99 (395)
T PRK11921 40 DEKTVLIDTVWAPFAKEFVENLKK------EID---------LDKIDYIVANH-----GEIDHSGALPELMKEIPDTPIY 99 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHH------HCC---------CCCCCEEEECC-----CCCCHHHHHHHHHHHCCCCEEE
T ss_conf 897899928984389999999996------459---------65699999389-----9975789999999988999999
Q ss_pred EECHHHHHHHHHCCC
Q ss_conf 977899998997096
Q gi|254780414|r 84 GICYGQQIMCQSLGG 98 (520)
Q Consensus 84 GICyG~QlLa~~~GG 98 (520)
+-=-|.+.|-..++.
T Consensus 100 ~s~~~~~~l~~~~~~ 114 (395)
T PRK11921 100 CTANGAKSLKGHYHQ 114 (395)
T ss_pred ECHHHHHHHHHHHCC
T ss_conf 878999999987288
No 227
>PRK00955 hypothetical protein; Provisional
Probab=74.13 E-value=5.9 Score=19.91 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=29.4
Q ss_pred EECCCCHHHHHHHHHHHCCCEEEEEC-CC-CCHHHHHHC-CCC-EEEECCCC
Q ss_conf 98897057889988886594069852-89-898899723-997-99998538
Q gi|254780414|r 13 IDFGSQFTQLIARRVRESKVYCEVIA-FK-NALDYFKEQ-NPQ-AIILSGSP 60 (520)
Q Consensus 13 lDfGSQytqLIaRriRelgVyseI~P-~~-~~~e~i~~~-~p~-GIILSGGP 60 (520)
+|-=|==.-+|.|-+...|.-.-|++ +| .+.+.++.+ .|. +.-+|+|.
T Consensus 25 VDHPsFG~AiIgR~Le~~GyrVgIIaQPdw~~~~df~~lG~PrLffgVsaGn 76 (599)
T PRK00955 25 VDHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKLGKPRLFFLVSAGN 76 (599)
T ss_pred CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 5686404899999999769659897289989847799728985787764654
No 228
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=73.84 E-value=7.2 Score=19.29 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEE-CCC----------------------CCHHHHHHCCCCEEEECCCCC
Q ss_conf 448869999889705788998888659406985-289----------------------898899723997999985388
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVI-AFK----------------------NALDYFKEQNPQAIILSGSPA 61 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~-P~~----------------------~~~e~i~~~~p~GIILSGGP~ 61 (520)
..-++|+|+|+|+ .-.+++|||.-.+. |.. -++|.|...+|+-||.||--+
T Consensus 56 knPekVvv~D~ga------LD~ld~lGve~~~v~~~~~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIiggR~a 129 (320)
T COG4607 56 KNPEKVVVLDLGA------LDTLDALGVEVVAVGPGKNLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIGGRAA 129 (320)
T ss_pred CCCCEEEEECCHH------HHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCHHH
T ss_conf 8875589954115------6668872972022368778637899714678666675358788999744998899774777
Q ss_pred CCCC
Q ss_conf 9999
Q gi|254780414|r 62 SSLD 65 (520)
Q Consensus 62 SV~d 65 (520)
--||
T Consensus 130 k~yd 133 (320)
T COG4607 130 KAYD 133 (320)
T ss_pred HHHH
T ss_conf 7799
No 229
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=73.61 E-value=7.3 Score=19.25 Aligned_cols=57 Identities=19% Similarity=0.389 Sum_probs=41.4
Q ss_pred CCHHHHHHCCCCEEEECCCCCCC-----CCCC--CCCCCHH-------HHHCCCCEEEECHHHHHHHHHCC
Q ss_conf 89889972399799998538899-----9999--9753768-------98089988997789999899709
Q gi|254780414|r 41 NALDYFKEQNPQAIILSGSPASS-----LDID--SPQIPKE-------ILESNIPLLGICYGQQIMCQSLG 97 (520)
Q Consensus 41 ~~~e~i~~~~p~GIILSGGP~SV-----~d~~--ap~~~~~-------I~~~~iPILGICyG~QlLa~~~G 97 (520)
.++.+++..+++++|+.||-... |..+ ...++++ ..+.++||=.||-.=-++|+.||
T Consensus 73 ~~l~~~~~~d~DaLiiPGGfGaAKNLs~fA~~g~~~~v~~~V~~~i~~f~~a~KPiG~iCIAP~l~a~vl~ 143 (213)
T cd03133 73 KDLAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred CCHHHCCHHHCCEEEECCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCC
T ss_conf 56456998678989978851455531002105887569899999999999849999997578999999818
No 230
>PRK08813 threonine dehydratase; Provisional
Probab=73.22 E-value=3.7 Score=21.36 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=29.0
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 44036640564047799999986223656999973895515627899998862369857997
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~v 283 (520)
.+-|+|+ |.|=-. -+.++..+.+|-..+-+ |-.+-.+.-.+..+. +|-+++..
T Consensus 81 ~~GVV~a-SaGNHa-qavA~aA~~~gi~a~Iv------mP~~ap~~Ki~~~r~-~GA~Vi~~ 133 (349)
T PRK08813 81 ERPVICA-SAGNHA-QGVAWSAYRLGVQAITV------MPHGAPQTKIAGVAH-WGATVRQH 133 (349)
T ss_pred CCCEEEE-CCCHHH-HHHHHHHHHCCCCEEEE------ECCCCCHHHHHHHHH-CCCEEEEE
T ss_conf 7867998-864899-99999999869998999------689998999999997-29869995
No 231
>PRK05408 hypothetical protein; Provisional
Probab=72.51 E-value=2.1 Score=23.16 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=29.3
Q ss_pred HCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 199988942688898311122100036789999999999999999
Q gi|254780414|r 386 LRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEI 430 (520)
Q Consensus 386 Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l 430 (520)
|+-.-+=+.+.||||| ||-||...|.++-=+.=..-...+|+|-
T Consensus 10 ~~~e~~gL~~pP~PG~-lG~~I~~~vSk~AW~~W~~~QTmLINE~ 53 (90)
T PRK05408 10 LQKEAEGLDFPPYPGE-LGKRIYENVSKEAWQEWLKHQTMLINEK 53 (90)
T ss_pred HCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4685778999999968-8899999988999999999889997141
No 232
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=72.23 E-value=2.5 Score=22.60 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=70.5
Q ss_pred ECCCHH----HCCCCCCCEEECCCCCCEEEEEECCCCEEE----EEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 022011----012444211232398317889863500112----465212221520257799875501064411140678
Q gi|254780414|r 137 SHGDQV----EHIPEGFEVIASSDSTPFAFIADEKRKYYA----VQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSY 208 (520)
Q Consensus 137 SH~D~V----~~lP~gf~viA~S~~~~iaai~~~~~~iyG----VQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~ 208 (520)
|||..| .++|++..|+.....||=.-.+..-..=+| +--|||-..+-.|..+-.-+...+-+-+..---..|
T Consensus 131 aHGfnI~~~~i~~r~di~V~MvAPK~PG~~VR~~y~~G~GvP~LiAvh~~~d~~g~~~~~a~aya~~~Gg~raGvlettF 210 (489)
T PRK05225 131 SHGFNIVEEGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSF 210 (489)
T ss_pred CCCCEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCH
T ss_conf 45650553123168886389975899964899998627997449997013598753899999999851897555363106
Q ss_pred HHHHHHHHHHHHCCCCEEEE-------------ECCCCHHHHHHHHHHH
Q ss_conf 99999999765044403664-------------0564047799999986
Q gi|254780414|r 209 HKEIVSRIKEQVGNERVICA-------------VSGGVDSTVAAFLIYE 244 (520)
Q Consensus 209 ~~~~i~~Ir~~vg~~kVi~~-------------lSGGVDStV~A~Ll~k 244 (520)
.+++-.+ --|..-|+|| ++-|+|+.-++.|++-
T Consensus 211 ~~E~etD---LfGEQ~vLCG~lq~gsil~~~kmi~~g~~~~ya~kliq~ 256 (489)
T PRK05225 211 VAEVKSD---LMGEQTILCGMLQAGSLLCFDKLVADGTDPAYAEKLIQF 256 (489)
T ss_pred HHHHHHH---HHCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8776643---210055543001101588788898726671578999986
No 233
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=72.09 E-value=4.9 Score=20.52 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=33.0
Q ss_pred EEEEEECCCCH--HHHHHHHH----HHCCCEEEEECCCCCHHHHHHCCCCEEEEC
Q ss_conf 69999889705--78899888----865940698528989889972399799998
Q gi|254780414|r 9 KVLIIDFGSQF--TQLIARRV----RESKVYCEVIAFKNALDYFKEQNPQAIILS 57 (520)
Q Consensus 9 ~IlIlDfGSQy--tqLIaRri----RelgVyseI~P~~~~~e~i~~~~p~GIILS 57 (520)
++||+ |++++ |+-||+++ ||.|.-|+|.|...- .++...++++||+.
T Consensus 2 k~LIl-Ystr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~-~~~~l~~ydavVIg 54 (175)
T COG4635 2 KTLIL-YSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV-EEPALEDYDAVVIG 54 (175)
T ss_pred CEEEE-EECCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHH-HCCCHHHCCEEEEE
T ss_conf 16999-8347775899999999975541770565365654-02684117569982
No 234
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=71.64 E-value=8.1 Score=18.94 Aligned_cols=75 Identities=27% Similarity=0.309 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEH----HHHHHHHHCC-CCCHHHHHH
Q ss_conf 6404779999998622365-699997389551562789999886236985799758----8999999668-988899998
Q gi|254780414|r 231 GGVDSTVAAFLIYEAIGIN-LTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDA----SERFIRKLKN-IVDPETKRK 304 (520)
Q Consensus 231 GGVDStV~A~Ll~kAig~~-l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda----~~~Fl~~L~g-v~DPE~KRk 304 (520)
+|.|+|.+..=+-++.+.. +.+||-|-=-.-=--.-.+...++. .++++.+|=. -+++-++|+. ..|+|+++|
T Consensus 50 DG~D~T~~i~~~v~~~~~~~~rvVlLdGIt~aGFNivDi~~l~~~-tg~PVi~V~~k~P~~e~i~~Al~k~f~d~e~R~r 128 (185)
T COG1628 50 DGLDVTDAISDMVNRSKRRDLRVVLLDGITFAGFNIVDIEALYKE-TGLPVIVVYRKKPDIERIESALRKHFDDAEERIR 128 (185)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCEEECCCEEECHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 682388999999998525561189987720305248428998876-1996899996379878999999975887999999
Q ss_pred HH
Q ss_conf 87
Q gi|254780414|r 305 VI 306 (520)
Q Consensus 305 iI 306 (520)
+|
T Consensus 129 ii 130 (185)
T COG1628 129 II 130 (185)
T ss_pred HH
T ss_conf 99
No 235
>PRK08526 threonine dehydratase; Provisional
Probab=71.29 E-value=8.2 Score=18.89 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCCCEEEEECCC-CHHHHHHHHHHHHCC-C-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH-HHC--
Q ss_conf 444036640564-047799999986223-6-5699997389551562789999886236985799758899999-966--
Q gi|254780414|r 221 GNERVICAVSGG-VDSTVAAFLIYEAIG-I-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR-KLK-- 294 (520)
Q Consensus 221 g~~kVi~~lSGG-VDStV~A~Ll~kAig-~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~-~L~-- 294 (520)
.+++|.|-|||| +|.+..+-++.+++= + |++.+.|+- ==|.+.-.++.+.+.+ .+-|+..+.....+.+ .+.
T Consensus 294 ~gk~Vv~ilsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~~-~d~pG~l~~~~~~i~~-~~~ni~~~~~~r~~~~~~~~~~ 371 (403)
T PRK08526 294 KGAKIGVVLSGGNIDVQMLNVIIEKGLIKSYRKMKLHVTL-VDKPGALMGLTDILKI-ANANIVKIDYDRFSTKLDYGDA 371 (403)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCE
T ss_conf 6997999971588898899999999888559989999986-8899679999999725-8995799998862577887736
Q ss_pred ------CCCCHHHHHHHH
Q ss_conf ------898889999887
Q gi|254780414|r 295 ------NIVDPETKRKVI 306 (520)
Q Consensus 295 ------gv~DPE~KRkiI 306 (520)
...++|...+++
T Consensus 372 ~v~~~~Et~~~~h~~~l~ 389 (403)
T PRK08526 372 NISITLETKGKEHQEEIR 389 (403)
T ss_pred EEEEEEEECCHHHHHHHH
T ss_conf 999999949999999999
No 236
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=71.19 E-value=8.2 Score=18.87 Aligned_cols=83 Identities=23% Similarity=0.389 Sum_probs=50.4
Q ss_pred CCCCCCCCEEEEEECCC----C-----H--HHHHHHHHHHCCCEEEEECCCC------------------CHH----HHH
Q ss_conf 98634488699998897----0-----5--7889988886594069852898------------------988----997
Q gi|254780414|r 1 MHKRERSSKVLIIDFGS----Q-----F--TQLIARRVRESKVYCEVIAFKN------------------ALD----YFK 47 (520)
Q Consensus 1 m~~~~~~~~IlIlDfGS----Q-----y--tqLIaRriRelgVyseI~P~~~------------------~~e----~i~ 47 (520)
|.+...-.|||||-=|. | | +| ..+.+||.|+...++.+|- +.+ -|.
T Consensus 1 MPkr~dikkvLiiGsGpi~IGqa~EfDysg~q-A~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~ePlt~e~v~~Ii~ 79 (1068)
T PRK12815 1 MPKRTDIKKILVIGSGPIIIGQAAEFDYSGTQ-ACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFEPLTLEFVKRIIR 79 (1068)
T ss_pred CCCCCCCCEEEEECCCCCHHCCHHHHHHHHHH-HHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 98867788899989881531234465656999-99999986998999889832620898744437885898999999999
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCHHHHH------CCCCEEEECHHH
Q ss_conf 239979999853889999999753768980------899889977899
Q gi|254780414|r 48 EQNPQAIILSGSPASSLDIDSPQIPKEILE------SNIPLLGICYGQ 89 (520)
Q Consensus 48 ~~~p~GIILSGGP~SV~d~~ap~~~~~I~~------~~iPILGICyG~ 89 (520)
..+|+||+.+=|-. .+..+..++.+ .++++||.-.-.
T Consensus 80 ~E~Pd~il~~~GGq-----taLnla~~L~~~GiL~k~~v~llGt~~~~ 122 (1068)
T PRK12815 80 REKPDALLATLGGQ-----TALNLAVKLLEAGILEQYGVELLGTNVEA 122 (1068)
T ss_pred HHCCCEEEECCCCH-----HHHHHHHHHHHCCCHHHCCCEEECCCHHH
T ss_conf 74999898677784-----79999999997597786596496799999
No 237
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=70.83 E-value=2.8 Score=22.25 Aligned_cols=48 Identities=10% Similarity=0.252 Sum_probs=35.9
Q ss_pred HHCCCCEEEECCCCCCCCC-CCCC---CCCHHHHHCCCCEEEECHHHHHHHH
Q ss_conf 7239979999853889999-9997---5376898089988997789999899
Q gi|254780414|r 47 KEQNPQAIILSGSPASSLD-IDSP---QIPKEILESNIPLLGICYGQQIMCQ 94 (520)
Q Consensus 47 ~~~~p~GIILSGGP~SV~d-~~ap---~~~~~I~~~~iPILGICyG~QlLa~ 94 (520)
...++++|.+.||....+| .+.+ ++..++++.+.||-.+|-|-=.|..
T Consensus 93 d~~~Ydavf~pGGHG~m~Dl~~~~~l~~ll~~~~~~gk~vaaVCHGpaaLl~ 144 (232)
T cd03148 93 DDSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLA 144 (232)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHC
T ss_conf 8422228996799753057757999999999999859979998674798740
No 238
>pfam03358 FMN_red NADPH-dependent FMN reductase.
Probab=70.18 E-value=8.7 Score=18.72 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=13.2
Q ss_pred EEEEECCCCHHH-HHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 366405640477-99999986223656999973895
Q gi|254780414|r 225 VICAVSGGVDST-VAAFLIYEAIGINLTCVLVDHGF 259 (520)
Q Consensus 225 Vi~~lSGGVDSt-V~A~Ll~kAig~~l~~vfVD~Gl 259 (520)
.+++.|||-... .+...+...+. .+.++.+..+.
T Consensus 105 ~~i~~~~g~~g~~~~~~~l~~~l~-~~g~~~~~~~~ 139 (147)
T pfam03358 105 AIVSVSGGRSGGLRALEHLRQVLA-ELGAVVVPSGV 139 (147)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH-HCCCEECCCCE
T ss_conf 999989970458999999999999-87999867667
No 239
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=69.91 E-value=8.8 Score=18.68 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=42.7
Q ss_pred HHHHHHHHH-CCCEEEEECCCC----CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 889988886-594069852898----98899723997999985388999999975376898089988997
Q gi|254780414|r 21 QLIARRVRE-SKVYCEVIAFKN----ALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 21 qLIaRriRe-lgVyseI~P~~~----~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
+++|-.+-| ++.-..+-||+. ..+++.++||+-|++=|||..| +|.+..++-+.|+++.-|
T Consensus 41 ~~lA~~iaellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~AV----s~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 41 LLLALPIAELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPIAV----SPNYENALKSLGITVKRI 106 (337)
T ss_pred HHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC----CHHHHHHHHHCCCEEEEE
T ss_conf 887567999758905726754213999999996198659997898757----865899998579579993
No 240
>pfam09897 DUF2124 Uncharacterized protein conserved in archaea (DUF2124). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=68.49 E-value=4.6 Score=20.71 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=43.2
Q ss_pred CCCCEEEEEECCC-----CHHHHHHHHHHHCCCEEEEECCCCCH----------------HHHHHCCCCEEEECCCCCCC
Q ss_conf 4488699998897-----05788998888659406985289898----------------89972399799998538899
Q gi|254780414|r 5 ERSSKVLIIDFGS-----QFTQLIARRVRESKVYCEVIAFKNAL----------------DYFKEQNPQAIILSGSPASS 63 (520)
Q Consensus 5 ~~~~~IlIlDfGS-----QytqLIaRriRelgVyseI~P~~~~~----------------e~i~~~~p~GIILSGGP~SV 63 (520)
...++|+- .|| -+.+|.+-.||+.....--+|. ..+ ++....+|+.++|-||=+-.
T Consensus 17 ~~~~kIvf--~Gs~GvC~PFaeL~~yaIR~~~~e~~FiP~-~~~e~a~~i~~~~~G~q~~~~~~~~~~D~lVlmGGLAMP 93 (147)
T pfam09897 17 KDGEKIVY--YGSPGVCTPFAELFGYAIRDTVLEQYFIPD-TDEEKARKIEVTDVGMQVLGENTDLNPDVLVLLGGLAMP 93 (147)
T ss_pred CCCCEEEE--ECCCEEECCHHHHHEEEEECCCCCEEECCC-CCHHHCEEEEECCCCEEECCCCCCCCCCEEEEECCCCCC
T ss_conf 58867999--789853326696521132046665487678-896682288735873377177678999899996765579
Q ss_pred CCCCCCCCCHHHHH--CCCCEEEECH
Q ss_conf 99999753768980--8998899778
Q gi|254780414|r 64 LDIDSPQIPKEILE--SNIPLLGICY 87 (520)
Q Consensus 64 ~d~~ap~~~~~I~~--~~iPILGICy 87 (520)
.-.-.|.-.+++.+ ....|.||||
T Consensus 94 ~~~vt~e~v~~li~k~~~~kviGvCF 119 (147)
T pfam09897 94 KSGVTPEDVKELIEKLNPKKVIGVCF 119 (147)
T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEEH
T ss_conf 99989999999999649987899974
No 241
>PRK06382 threonine dehydratase; Provisional
Probab=68.14 E-value=9.5 Score=18.43 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=51.7
Q ss_pred HHCCCCEEEEECCC-CHHHHHHHHHHHHCC-C-CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH--
Q ss_conf 50444036640564-047799999986223-6-569999738955156278999988623698579975889999996--
Q gi|254780414|r 219 QVGNERVICAVSGG-VDSTVAAFLIYEAIG-I-NLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKL-- 293 (520)
Q Consensus 219 ~vg~~kVi~~lSGG-VDStV~A~Ll~kAig-~-~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L-- 293 (520)
...+++|.|-|||| +|.+..+-++.|++- + |+.-+.|+- ==|-+.-.++.+.+.+ .+.|+..+.-...|.+.-
T Consensus 290 ~~~gk~Vv~vlsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~i-~d~pG~L~~~~~~i~~-~~~ni~~i~~~r~~~~~~~~ 367 (400)
T PRK06382 290 DVKGKKVAIVVSGGNINPLLMSKIIYKELENLGQLVRIECNI-PDRPGNLYRIANAIAS-NGGNIYHAEVDNLRKETPPG 367 (400)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCHHHHHHHHHHC-CCCCEEEEEEEEECCCCCCC
T ss_conf 537984999963788797899999999888639979999986-8899779999999706-89957999987602557876
Q ss_pred -------CCCCCHHHHHHHHH
Q ss_conf -------68988899998875
Q gi|254780414|r 294 -------KNIVDPETKRKVIG 307 (520)
Q Consensus 294 -------~gv~DPE~KRkiIG 307 (520)
-.+.|+|...+|+.
T Consensus 368 ~~~v~~~iEt~~~~h~~~i~~ 388 (400)
T PRK06382 368 FQSVTFTVNVRGQDHLDRILN 388 (400)
T ss_pred EEEEEEEEEECCHHHHHHHHH
T ss_conf 268999998099999999999
No 242
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=67.82 E-value=7.4 Score=19.22 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=7.0
Q ss_pred CEEEEEECCCCCCCCCHHHHH
Q ss_conf 569999738955156278999
Q gi|254780414|r 249 NLTCVLVDHGFMRKNEVENII 269 (520)
Q Consensus 249 ~l~~vfVD~GllRknE~~~v~ 269 (520)
.-.++.|.-|- .+|.+.+.
T Consensus 108 daV~~~v~~Gs--~~E~~~l~ 126 (266)
T PRK07226 108 DAVSVHVNVGS--ETEAEMLE 126 (266)
T ss_pred CEEEEEEECCC--CCHHHHHH
T ss_conf 78999854799--83799999
No 243
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=66.92 E-value=5.8 Score=19.98 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCE-EEECHHH
Q ss_conf 788998888659406985289898899723997999985388999999975376898089988-9977899
Q gi|254780414|r 20 TQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPL-LGICYGQ 89 (520)
Q Consensus 20 tqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPI-LGICyG~ 89 (520)
....+.|++|||=+++|-..+...++-...+.+.||++.-+. +..-+++...-+.++|. .+=|+|+
T Consensus 75 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~fdvVv~t~~~~----~~~~~iN~~cR~~~i~Fi~~~~~G~ 141 (286)
T cd01491 75 AEASQARLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASL----EDQLKINEFCHSPGIKFISADTRGL 141 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCEEEEECCCH----HHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999999999648982589635777888853888899918998----9999998888775981999505775
No 244
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=66.40 E-value=5.5 Score=20.13 Aligned_cols=139 Identities=12% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCEEEE-CCCCCCCCCCCCCCCCHHHHHC---CCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEEC-----CCCCC
Q ss_conf 979999-8538899999997537689808---99889977899998997096999869866103667523-----88622
Q gi|254780414|r 51 PQAIIL-SGSPASSLDIDSPQIPKEILES---NIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIK-----KNCSL 121 (520)
Q Consensus 51 p~GIIL-SGGP~SV~d~~ap~~~~~I~~~---~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~-----~~~~l 121 (520)
--||=+ |+||+ +-++..-+++. ++|+|.| .| .++++.++.+ +..|+
T Consensus 63 kIGVafGSAGPG------AvhLlNGlYDA~eD~vP~LAl----------vG---------q~~~~~mNmD~FQe~ne~Pi 117 (577)
T TIGR02720 63 KIGVAFGSAGPG------AVHLLNGLYDAKEDHVPVLAL----------VG---------QVPTTEMNMDAFQEMNEEPI 117 (577)
T ss_pred CEEEEEECCCCH------HHHHHHHHHHHHHCCCCEEEE----------EC---------CCCCCCCCHHHHHHHHCCCC
T ss_conf 338985178731------454431111132168850442----------40---------33666563068888504886
Q ss_pred CCCCCCCCCCEEEEEECCCHHHCCC---CCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 2787266553368600220110124---4421123239831788986350011246521222152025779987550106
Q gi|254780414|r 122 LKGMWEKGSKQQVWMSHGDQVEHIP---EGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAG 198 (520)
Q Consensus 122 f~gl~~~~~~~~VwmSH~D~V~~lP---~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~ 198 (520)
|+++...+.+. =.-+.|| +..--.|.+.++ +|.++.+.. ||.|==||-. -+.-+.
T Consensus 118 f~DvAvyN~t~-------~~Ae~LP~v~DeAiR~Ay~~~G-vAVv~IP~d--fG~~eI~~~~------------y~~as~ 175 (577)
T TIGR02720 118 FDDVAVYNRTV-------MTAESLPKVIDEAIRAAYAHNG-VAVVTIPVD--FGWQEIPDND------------YYAASV 175 (577)
T ss_pred CCCCCCCCCEE-------CCCCCCCCHHHHHHHHHHHHCC-CEEEECCCC--CCCCCCCCCC------------CCCCCC
T ss_conf 47701010000-------2621067057899999985079-889985787--7843155434------------433445
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC--CEEEEECCCCHHH
Q ss_conf 4411140678999999997650444--0366405640477
Q gi|254780414|r 199 IQDNWVMSSYHKEIVSRIKEQVGNE--RVICAVSGGVDST 236 (520)
Q Consensus 199 ~~~~W~~~~~~~~~i~~Ir~~vg~~--kVi~~lSGGVDSt 236 (520)
-.+....-..-++.|..+-+.+.+- -||-.--|+++-+
T Consensus 176 ~~~~~~~P~~~~~~v~~~~~~l~aA~~P~iY~G~Ga~~A~ 215 (577)
T TIGR02720 176 SEKLVLLPAPDEEEVKKAVKLLKAAKRPVIYVGVGARKAG 215 (577)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHH
T ss_conf 4111458887888999999999841897699830752478
No 245
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=66.37 E-value=10 Score=18.20 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=11.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 88699998897057889988886594
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKV 32 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgV 32 (520)
..+||++.--.|+..+|...-+..+.
T Consensus 56 ~g~ILfVgtk~~~~~~v~~~a~~~~~ 81 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGS 81 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 99599997578999999999998399
No 246
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=64.99 E-value=11 Score=18.02 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=41.6
Q ss_pred CCHHHHHHCCCCEEEECCCCCCC-----CCCC--CCCCCHH-------HHHCCCCEEEECHHHHHHHHHCCC
Q ss_conf 89889972399799998538899-----9999--9753768-------980899889977899998997096
Q gi|254780414|r 41 NALDYFKEQNPQAIILSGSPASS-----LDID--SPQIPKE-------ILESNIPLLGICYGQQIMCQSLGG 98 (520)
Q Consensus 41 ~~~e~i~~~~p~GIILSGGP~SV-----~d~~--ap~~~~~-------I~~~~iPILGICyG~QlLa~~~GG 98 (520)
.++.+++..+++++|+.||-..+ |..+ ...++++ ....++||=.||-.--+++..||-
T Consensus 76 ~~l~~~~~~d~DaLI~PGGfGaAKNLs~fA~~G~~~~V~p~V~~~i~~f~~a~KPiG~iCIaP~l~a~vl~~ 147 (217)
T PRK11780 76 KDLAEADAEDFDALIVPGGFGAAKNLSNFAFKGAECSVDPEVKALARAFHQAGKPIGFICIAPAMLPKILGE 147 (217)
T ss_pred CCHHHCCHHHCCEEEECCCCHHHHCCCCHHHCCCCCEECHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCC
T ss_conf 674569975678799678620443110165349986487899999999998099989860768999997288
No 247
>KOG2946 consensus
Probab=64.16 E-value=6.2 Score=19.75 Aligned_cols=54 Identities=31% Similarity=0.392 Sum_probs=39.2
Q ss_pred EEEEECCCC--HHHHHC-CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC-CCCEEE
Q ss_conf 344302320--113203-202237898738999999998199988942688898-311122
Q gi|254780414|r 350 IKSHHNVGG--LPEHMD-MKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG-PGLAIR 406 (520)
Q Consensus 350 IKsHHNvgg--lp~~~~-~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPG-PGLaiR 406 (520)
=++--|-|+ +-+.-. ..+=||+++--|-++|++|..|. ..++-||.|+ +|-++|
T Consensus 39 ~~~~~nsg~g~~~~~~e~dTldePv~~TlkrDl~~I~~kl~---~VlyP~py~~dk~~~lR 96 (234)
T KOG2946 39 GNSAGNSGFGWLLEVNEEDTLDEPVLETLKRDLRAIGSKLK---HVLYPHPYFEDKGQLLR 96 (234)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEE---EEECCCCCCCCCCCEEE
T ss_conf 66345667531026688885410699999889999876057---99715888665310010
No 248
>PRK10717 cysteine synthase A; Provisional
Probab=63.62 E-value=11 Score=17.84 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH-HHHHC--CCCEEEEEECCCC
Q ss_conf 99999997650444036640564047799999-98622--3656999973895
Q gi|254780414|r 210 KEIVSRIKEQVGNERVICAVSGGVDSTVAAFL-IYEAI--GINLTCVLVDHGF 259 (520)
Q Consensus 210 ~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~L-l~kAi--g~~l~~vfVD~Gl 259 (520)
++.+.-.|.-..++.++++.|+|. +++|++ +.+-+ |+++.|||=|+|.
T Consensus 259 ~ea~~~~~~L~~~eGi~vg~Ssga--~~aaa~~~~~~~~~g~~VV~Il~D~G~ 309 (334)
T PRK10717 259 EEALSIAYRLLEEEGLCLGGSSGI--NVAAAVRLARELGPGHTIVTILCDSGE 309 (334)
T ss_pred HHHHHHHHHHHHHHCCEECHHHHH--HHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 999999999999839677307999--999999999870986979999798974
No 249
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=62.83 E-value=12 Score=17.75 Aligned_cols=92 Identities=10% Similarity=0.213 Sum_probs=57.0
Q ss_pred CCCCEEEEEECCCC----HHHHHHHHHHHCCCEE-EEECCCC-----CHHHH-HHCCCCEEEECCCCCCCC----C-CCC
Q ss_conf 44886999988970----5788998888659406-9852898-----98899-723997999985388999----9-999
Q gi|254780414|r 5 ERSSKVLIIDFGSQ----FTQLIARRVRESKVYC-EVIAFKN-----ALDYF-KEQNPQAIILSGSPASSL----D-IDS 68 (520)
Q Consensus 5 ~~~~~IlIlDfGSQ----ytqLIaRriRelgVys-eI~P~~~-----~~e~i-~~~~p~GIILSGGP~SV~----d-~~a 68 (520)
..+.+|+++.-.|. |...-....+.+|+.. ++++.+. +.+.+ .-.+.++|.++||-.+-+ . ...
T Consensus 27 ~~~~ri~viptAs~~~~~~~~~~~~~f~~lG~~~v~~l~~~~r~~a~~~~~~~~l~~a~~i~~~GG~q~~~~~~~~~t~~ 106 (217)
T cd03145 27 GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPL 106 (217)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCH
T ss_conf 99875999858878859999999999998399950598226835448989999996499899938999999999963969
Q ss_pred CCCCHHHHHCCCCEEEECHHHHHHHHHC
Q ss_conf 7537689808998899778999989970
Q gi|254780414|r 69 PQIPKEILESNIPLLGICYGQQIMCQSL 96 (520)
Q Consensus 69 p~~~~~I~~~~iPILGICyG~QlLa~~~ 96 (520)
...-++.++.+.|+.|.-=|+-+|+...
T Consensus 107 ~~~l~~~~~~G~vi~G~SAGA~~~~~~~ 134 (217)
T cd03145 107 LDALRKVYRGGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHC
T ss_conf 9999999986994884117888745421
No 250
>PRK01254 hypothetical protein; Provisional
Probab=62.77 E-value=12 Score=17.74 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHHCCCEEEEEC-CC-CCHHHHHHC-CCC-EEEECCCCC
Q ss_conf 7889988886594069852-89-898899723-997-999985388
Q gi|254780414|r 20 TQLIARRVRESKVYCEVIA-FK-NALDYFKEQ-NPQ-AIILSGSPA 61 (520)
Q Consensus 20 tqLIaRriRelgVyseI~P-~~-~~~e~i~~~-~p~-GIILSGGP~ 61 (520)
.-+|.|-+...|.-.-|++ +| .+.+.++.+ .|. +.-+|+|..
T Consensus 57 ~AiIgR~LE~~GfrVGIIaQPdW~~~~df~~LG~PrLffgVtaGnm 102 (742)
T PRK01254 57 MAIIGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFGVTAGNM 102 (742)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCEEEEECCCCH
T ss_conf 8999999998696598971799998588997289847888636548
No 251
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=62.22 E-value=8.2 Score=18.89 Aligned_cols=113 Identities=21% Similarity=0.296 Sum_probs=68.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCC-----CEEEEEECCC--CCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCC
Q ss_conf 0366405640477999999862236-----5699997389--55156278999988623698579975889999996689
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGI-----NLTCVLVDHG--FMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNI 296 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~-----~l~~vfVD~G--llRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv 296 (520)
||=...|||=||+.| ||+|+.+ -|..|+=||- .|=+==--...++..+-.|+||+ =..-+|+
T Consensus 2 kvAvLySGGKDS~~A---Ly~al~eG~eV~~LV~v~seN~eSyMfH~pN~Hl~~l~AEavGiPL~--------klyt~Ge 70 (227)
T TIGR00289 2 KVAVLYSGGKDSILA---LYKALEEGFEVKYLVGVISENEESYMFHVPNVHLTDLVAEAVGIPLI--------KLYTSGE 70 (227)
T ss_pred EEEEEECCCHHHHHH---HHHHHHCCCCEEEEEEEECCCCCCCEEECHHHHHHHHHHHHCCCCHH--------HHHCCCC
T ss_conf 068985187136899---99998628854785100028898620534257899999976176625--------6302786
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 88899998875658999999997439--97099864622024542024677763034430232011320320223789
Q gi|254780414|r 297 VDPETKRKVIGQLFIEVFEEEAKKIG--GAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 297 ~DPE~KRkiIG~~Fi~vf~~~a~~~~--~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
.+-| ++-.-....++. +++=+..|.+|..-=.| -|- -..+.+.+|.+-||=
T Consensus 71 eEkE----------VedLag~l~~lderGvea~~~Ga~~S~YQK~---------Rid------~vCrelGlks~APLW 123 (227)
T TIGR00289 71 EEKE----------VEDLAGQLEELDERGVEAVVIGAIESEYQKS---------RID------KVCRELGLKSIAPLW 123 (227)
T ss_pred CCCH----------HHHHHHHHHHHHHCCCCEEEECCEECCHHHH---------HHH------HHHHHHCCHHCCCCC
T ss_conf 5211----------7666215544553054547885341011233---------577------887771410027601
No 252
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=61.88 E-value=12 Score=17.63 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred HHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCC-CC-----CCHHHHHHHHH
Q ss_conf 1101244421123239831788986350011246521222152025779987550106441-11-----40678999999
Q gi|254780414|r 141 QVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQD-NW-----VMSSYHKEIVS 214 (520)
Q Consensus 141 ~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~-~W-----~~~~~~~~~i~ 214 (520)
.|.++-++|..-|. .-.+--+=|||-|= -+| -+|..|+....+-.. .| +--.|.-+.++
T Consensus 144 eI~~ii~~f~~AA~---------rA~~AGfDgVEIHa-----ahG-YLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~ 208 (370)
T cd02929 144 DIKRVRRWYVDAAL---------RARDAGFDIVYVYA-----AHG-YLPLQFLLPRYNKRTDEYGGSLENRARFWRETLE 208 (370)
T ss_pred HHHHHHHHHHHHHH---------HHHHCCCCEEEECC-----CCC-HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999---------99985989899771-----135-5999734774578777468988999899999999
Q ss_pred HHHHHHCCCC-EEEEEC
Q ss_conf 9976504440-366405
Q gi|254780414|r 215 RIKEQVGNER-VICAVS 230 (520)
Q Consensus 215 ~Ir~~vg~~k-Vi~~lS 230 (520)
.||+.||++. |.+-+|
T Consensus 209 aVr~~vg~df~i~~R~s 225 (370)
T cd02929 209 DTKDAVGDDCAVATRFS 225 (370)
T ss_pred HHHHHHCCCCEEEEEEC
T ss_conf 99997199875999989
No 253
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=61.66 E-value=6.4 Score=19.67 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=31.2
Q ss_pred EEECCCCCHH---HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHH-HCCCCEEEE
Q ss_conf 9852898988---99723997999985388999999975376898-089988997
Q gi|254780414|r 35 EVIAFKNALD---YFKEQNPQAIILSGSPASSLDIDSPQIPKEIL-ESNIPLLGI 85 (520)
Q Consensus 35 eI~P~~~~~e---~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~-~~~iPILGI 85 (520)
||+.|=..++ .+-.+=|+||+|+|-|. .+.--+.+++- |.++|.|-|
T Consensus 73 EiVdFLK~P~kf~~LGaKIPKGVLLvGPPG----TGKTLLAKAvAGEA~VPFF~i 123 (505)
T TIGR01241 73 EIVDFLKNPSKFTKLGAKIPKGVLLVGPPG----TGKTLLAKAVAGEAGVPFFSI 123 (505)
T ss_pred HHHHHCCCCHHHHHCCCCCCCCEEEECCCC----CCHHHHHHHHHCCCCCCCEEE
T ss_conf 134222696379872788987147317878----424678875202588962474
No 254
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.12 E-value=5.3 Score=20.25 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=40.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC--CCCEEEEC
Q ss_conf 6999988970578899888865940698528989889972399799998538899999997537689808--99889977
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES--NIPLLGIC 86 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~--~iPILGIC 86 (520)
|+.|+.-+++.++-++..++++=.. +... ..+.+|+-+|-=||-.+.. +........ ++|+|||-
T Consensus 2 k~~iv~~~~~~s~~~~~~~~~~l~~-----~~~~---~~~~~~Dlvi~iGGDGT~L-----~a~~~~~~~~~~vPilGIN 68 (265)
T PRK04885 2 KVAIISNGDEKSKRVASKLKKYLKD-----FGFI---LDEKNPDIVISVGGDGTLL-----SAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-----CCCC---CCCCCCCEEEEECCCHHHH-----HHHHHHHCCCCCCCEEEEE
T ss_conf 6999969698999999999999987-----6985---5877899999988739999-----9999863036797589873
Q ss_pred HHH
Q ss_conf 899
Q gi|254780414|r 87 YGQ 89 (520)
Q Consensus 87 yG~ 89 (520)
.|+
T Consensus 69 ~G~ 71 (265)
T PRK04885 69 TGH 71 (265)
T ss_pred CCC
T ss_conf 585
No 255
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=60.27 E-value=13 Score=17.44 Aligned_cols=69 Identities=19% Similarity=0.350 Sum_probs=42.0
Q ss_pred EEEEEEHHHCCCHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHH---HHC----CCCEEEEECCCCHHHHH
Q ss_conf 246521222152025779987550106------44111406789999999976---504----44036640564047799
Q gi|254780414|r 172 AVQFHPEVVHTVGGSQLIDNFVHHVAG------IQDNWVMSSYHKEIVSRIKE---QVG----NERVICAVSGGVDSTVA 238 (520)
Q Consensus 172 GVQFHPEV~hT~~G~~iL~NFl~~Ic~------~~~~W~~~~~~~~~i~~Ir~---~vg----~~kVi~~lSGGVDStV~ 238 (520)
|+=|=|. |+ ...|+++| .-|. ..|-+.=+.||...+++||+ -+. +..+.+-+=|||+-.-+
T Consensus 110 G~v~NP~---TP--l~~~~~~L-~~~D~VLlMSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~~~ni 183 (216)
T TIGR01163 110 GIVLNPA---TP--LEALEYVL-EDVDLVLLMSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVNEDNI 183 (216)
T ss_pred EEEECCC---CC--HHHHHHHH-HHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
T ss_conf 6886799---99--87899898-762989988760799884110578999999999998602799558997179897679
Q ss_pred HHHHHHHCCC
Q ss_conf 9999862236
Q gi|254780414|r 239 AFLIYEAIGI 248 (520)
Q Consensus 239 A~Ll~kAig~ 248 (520)
+. +.+| |-
T Consensus 184 ~~-~~~A-GA 191 (216)
T TIGR01163 184 AE-VAEA-GA 191 (216)
T ss_pred HH-HHHC-CC
T ss_conf 99-9975-89
No 256
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=60.04 E-value=13 Score=17.41 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=36.9
Q ss_pred EEECCC---CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE---HHHHHHHHHCCCCC
Q ss_conf 640564---0477999999862236569999738955156278999988623698579975---88999999668988
Q gi|254780414|r 227 CAVSGG---VDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVD---ASERFIRKLKNIVD 298 (520)
Q Consensus 227 ~~lSGG---VDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vd---a~~~Fl~~L~gv~D 298 (520)
..+||| +-.--+..|+.+|=...+++.+.-||+.++.+ +.+.+.+. .+++..+| ..+.+..++-|+..
T Consensus 74 VT~SGGEPllq~ef~~~l~~~~k~~gi~taidTnG~~~~~~-~~~~~ll~---~~D~vl~DiK~~d~~~h~~~tG~~n 147 (246)
T PRK11145 74 VTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYD-PVIDELLD---VTDLVMLDLKQMNDEIHQNLVGVSN 147 (246)
T ss_pred EEEECCCEECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCH-HHHHHHHH---HCCEEEECCCCCCHHHHHHHHCCCC
T ss_conf 89869951268999999999998879989998999987557-99999886---3234576466689899999988891
No 257
>TIGR02611 TIGR02611 conserved hypothetical protein TIGR02611; InterPro: IPR013434 Proteins in this entry are putative Actinobacterial proteins of about 150 amino acids in length, with three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW..
Probab=59.76 E-value=3.1 Score=21.89 Aligned_cols=14 Identities=50% Similarity=0.885 Sum_probs=8.9
Q ss_pred CCCCCCCCEEEECC
Q ss_conf 88898311122100
Q gi|254780414|r 396 HPCPGPGLAIRCIG 409 (520)
Q Consensus 396 hPFPGPGLaiRi~g 409 (520)
=||||||=.+==+|
T Consensus 48 iP~PGPGWl~~FiG 61 (126)
T TIGR02611 48 IPLPGPGWLTIFIG 61 (126)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 18576607467999
No 258
>pfam10288 DUF2392 Protein of unknown function (DUF2392). This is a family of proteins conserved from plants to humans. The function is not known. It carries a characteristic GRG sequence motif.
Probab=59.70 E-value=6.1 Score=19.79 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=27.7
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHC
Q ss_conf 03202237898738999999998199988942
Q gi|254780414|r 363 MDMKLVEPLKELFKDEVRLLGKELRLPDSFVE 394 (520)
Q Consensus 363 ~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~ 394 (520)
..++++-||||+++.|+....+..+++..++.
T Consensus 29 ~~i~~~~PLRD~l~~Ei~~Y~~~~~l~~~~~~ 60 (104)
T pfam10288 29 NDIKILRPLRDLLLKEIEAYCSLKNLPPLLIN 60 (104)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHCCCHHCCC
T ss_conf 88347737588569999999998087400135
No 259
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=59.26 E-value=14 Score=17.32 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=43.0
Q ss_pred EEEEECCCCHH----HHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 99998897057----88998888659406985289898-------89972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQFT----QLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQyt----qLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
++|=|+...|- +-|.+..++.|+...+...+.+. +.+...+++|||++.--. + ..+..-+.+.+.
T Consensus 4 vivp~l~npff~~~~~gi~~~a~~~Gy~~~i~~s~~~~~~e~~~i~~l~~~~vdgiI~~p~~~---~-~~~~~i~~~~~~ 79 (268)
T cd06323 4 LSVSTLNNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDS---D-AVVPAVKAANEA 79 (268)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC---C-CCHHHHHHHHHC
T ss_conf 998889799999999999999997599899981999999999999999964999899756542---1-246999999976
Q ss_pred CCCEEEE
Q ss_conf 9988997
Q gi|254780414|r 79 NIPLLGI 85 (520)
Q Consensus 79 ~iPILGI 85 (520)
++|+.-+
T Consensus 80 ~iPvV~i 86 (268)
T cd06323 80 GIPVFTI 86 (268)
T ss_pred CCCEEEE
T ss_conf 9968996
No 260
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase; InterPro: IPR011800 Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulphate reductase catalyzes the reduction of 3'-phosphoadenylylsulphate (PAPS) to sulphite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (IPR004508 from INTERPRO) and bacterial (IPR011798 from INTERPRO) enzymes preferring 5'-adenylylsulphate (APS) over PAPS as a substrate for reduction to sulphite.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=58.52 E-value=14 Score=17.24 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHHCC---CCEEEEEECCCCCCCCCHHHHHHHHHHC------CCCCEEEEE---H
Q ss_conf 650444036640564047799999986223---6569999738955156278999988623------698579975---8
Q gi|254780414|r 218 EQVGNERVICAVSGGVDSTVAAFLIYEAIG---INLTCVLVDHGFMRKNEVENIISLFKGY------PNFPLRVVD---A 285 (520)
Q Consensus 218 ~~vg~~kVi~~lSGGVDStV~A~Ll~kAig---~~l~~vfVD~GllRknE~~~v~~~~~~~------~~~~l~~vd---a 285 (520)
+..+.+.-+.-=|=|||..|.-=|+.+-.. .+.=-||+|||++=. |+-+..+-+++. ..||+.+.+ +
T Consensus 23 ~~~P~G~Lv~tsaFg~~~lV~~hll~~~~keky~~~pvif~DTly~F~-~Tl~l~~~~~~~y~qPkn~~L~~~~~~~~~s 101 (239)
T TIGR02057 23 ETFPTGELVQTSAFGIQALVILHLLSSILKEKYPDIPVIFIDTLYLFP-QTLELVDELTEKYKQPKNLDLNLYKYDDVES 101 (239)
T ss_pred HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf 755999745301020478999999999876217998678621113627-8999999999986276556330331688887
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780414|r 286 SERF 289 (520)
Q Consensus 286 ~~~F 289 (520)
.+.|
T Consensus 102 ~a~~ 105 (239)
T TIGR02057 102 EAAF 105 (239)
T ss_pred HHHH
T ss_conf 8989
No 261
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=57.70 E-value=14 Score=17.14 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=52.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHH-CC-CCE
Q ss_conf 4488699998897057889988886594069852898988997239979999853889999999753768980-89-988
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILE-SN-IPL 82 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~-~~-iPI 82 (520)
+-.+.|+|+|+|..+. .. .-+||.- |+|...-+.+.. .+.+||+||-|.. |..---+.++. .+ +||
T Consensus 28 e~~~~i~i~D~G~~fp--~~---~~~gvDl-iIPd~~yl~~n~-~kvkgI~lTHgHe-----DHIGaip~ll~~~~~~pi 95 (555)
T COG0595 28 EYGDDIIILDAGLKFP--ED---DLLGVDL-IIPDFSYLEENK-DKVKGIFLTHGHE-----DHIGALPYLLKQVLFAPI 95 (555)
T ss_pred EECCCEEEEECCCCCC--CC---CCCCCCE-EECCHHHHHHCC-CCCEEEEECCCCH-----HHCCCHHHHHHCCCCCCE
T ss_conf 9789689997765668--64---3555558-825827743150-0213999468744-----432346789852776844
Q ss_pred EEECHHHHHHHHHCC
Q ss_conf 997789999899709
Q gi|254780414|r 83 LGICYGQQIMCQSLG 97 (520)
Q Consensus 83 LGICyG~QlLa~~~G 97 (520)
.|-=+...++-..+.
T Consensus 96 y~s~lt~~Li~~k~~ 110 (555)
T COG0595 96 YASPLTAALIKEKLK 110 (555)
T ss_pred ECCHHHHHHHHHHHH
T ss_conf 447766999998988
No 262
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=57.33 E-value=15 Score=17.10 Aligned_cols=57 Identities=14% Similarity=0.302 Sum_probs=37.2
Q ss_pred CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH----------HHHHHHHHCCC
Q ss_conf 989889972399799998538899999997537689808998899778----------99998997096
Q gi|254780414|r 40 KNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY----------GQQIMCQSLGG 98 (520)
Q Consensus 40 ~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy----------G~QlLa~~~GG 98 (520)
+.+.|.+.+.+|+-||++.+... ..........+-+.|||++.+=| -+.+|+..+|-
T Consensus 81 ~~n~E~il~l~PDvVi~~~~~~~--~~~~~~~~~~l~~~GIpVv~~~~~~~~~e~~~~~i~~lG~ilg~ 147 (342)
T cd01139 81 DFSVEKVLTLKPDLVILNIWAKT--TAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred CCCHHHHHHCCCCEEEEECCCCC--CCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf 85999996219988999443456--54456799999971998899946875088899999999998298
No 263
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.16 E-value=8.7 Score=18.69 Aligned_cols=77 Identities=14% Similarity=0.291 Sum_probs=41.0
Q ss_pred CEEEEE-ECCCC----HHHHHHHHHHHCCCEEEEECCCCCH------------H-----HHHHCCCCEEEECCCCCCCCC
Q ss_conf 869999-88970----5788998888659406985289898------------8-----997239979999853889999
Q gi|254780414|r 8 SKVLII-DFGSQ----FTQLIARRVRESKVYCEVIAFKNAL------------D-----YFKEQNPQAIILSGSPASSLD 65 (520)
Q Consensus 8 ~~IlIl-DfGSQ----ytqLIaRriRelgVyseI~P~~~~~------------e-----~i~~~~p~GIILSGGP~SV~d 65 (520)
.+|+|+ ..+++ ..+.|++.+++.|+-+.+...+... + .....+.+-+|--||-.++
T Consensus 5 R~V~IV~k~~~~~a~~~a~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~-- 82 (303)
T PRK03372 5 RTVLLVAHTGRDEATESARRVVKQLGDAGIGVRVLAAEAADLPDDMRALGVEIEVVDADPDAADGCELVLVLGGDGTF-- 82 (303)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH--
T ss_conf 889999708998999999999999997889899970401002444555565422345322335785589997787899--
Q ss_pred CCCCCCCHHHHHCCCCEEEECHHH
Q ss_conf 999753768980899889977899
Q gi|254780414|r 66 IDSPQIPKEILESNIPLLGICYGQ 89 (520)
Q Consensus 66 ~~ap~~~~~I~~~~iPILGICyG~ 89 (520)
.+........++|||||-+|+
T Consensus 83 ---L~aar~~~~~~iPilGiN~G~ 103 (303)
T PRK03372 83 ---LRAAELARNADVPVLGVNLGH 103 (303)
T ss_pred ---HHHHHHHCCCCCCEEEEECCC
T ss_conf ---999998444799889872598
No 264
>PRK10693 response regulator of RpoS; Provisional
Probab=56.23 E-value=15 Score=16.98 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHCCCCEEEE
Q ss_conf 986344886999988970578899888865940698528-98988997239979999
Q gi|254780414|r 1 MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAF-KNALDYFKEQNPQAIIL 56 (520)
Q Consensus 1 m~~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~-~~~~e~i~~~~p~GIIL 56 (520)
|++.....||||+|=-.-...++.+.++..|........ ...++.+....|+-||+
T Consensus 1 m~~pl~gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~ 57 (337)
T PRK10693 1 MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 (337)
T ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEE
T ss_conf 998888998999949999999999999978999999899999999986589999999
No 265
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.79 E-value=9.1 Score=18.57 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=43.6
Q ss_pred CCEEEEEE-CCCCHHH----HHHHHHHHCCCEEEEECCCCC---HHHH---HHCCCCEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 88699998-8970578----899888865940698528989---8899---72399799998538899999997537689
Q gi|254780414|r 7 SSKVLIID-FGSQFTQ----LIARRVRESKVYCEVIAFKNA---LDYF---KEQNPQAIILSGSPASSLDIDSPQIPKEI 75 (520)
Q Consensus 7 ~~~IlIlD-fGSQytq----LIaRriRelgVyseI~P~~~~---~e~i---~~~~p~GIILSGGP~SV~d~~ap~~~~~I 75 (520)
-.+|+|+- .++.-.+ .+++.+.+.|+-+-+.+.+.. .+.. ....++-+|--||-.++ .+....+
T Consensus 3 lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~-----L~aar~~ 77 (304)
T PRK02645 3 LKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIVLGGDGTV-----LAAARHL 77 (304)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH-----HHHHHHH
T ss_conf 45999998589999999999999999988899998444344477762001446688899997868899-----9999985
Q ss_pred HHCCCCEEEECH-H
Q ss_conf 808998899778-9
Q gi|254780414|r 76 LESNIPLLGICY-G 88 (520)
Q Consensus 76 ~~~~iPILGICy-G 88 (520)
...++|||||-+ |
T Consensus 78 ~~~~iPilGiN~~G 91 (304)
T PRK02645 78 APHDIPILSFNVGG 91 (304)
T ss_pred CCCCCCEEEEECCC
T ss_conf 42699889982486
No 266
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II; InterPro: IPR011287 This entry represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids . These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=55.75 E-value=14 Score=17.31 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHH---HHHHHHHHHHHCCC--CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH-HHHHH
Q ss_conf 0644111406789---99999997650444--036640564047799999986223656999973895515627-89999
Q gi|254780414|r 197 AGIQDNWVMSSYH---KEIVSRIKEQVGNE--RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEV-ENIIS 270 (520)
Q Consensus 197 c~~~~~W~~~~~~---~~~i~~Ir~~vg~~--kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~-~~v~~ 270 (520)
-...+.|-++.|+ ++.|+-.|+..|++ ..+-|.|||+ |++|.+-|-+...+ +||=.+ .-.+.
T Consensus 259 ~~~~REWGLStYv~AL~~A~~~~~~ItG~~d~Nl~GACaGGl--T~aAL~GHl~~~~~----------~RkV~s~T~LVS 326 (560)
T TIGR01839 259 DKAHREWGLSTYVDALEEAVDAVRAITGSRDLNLLGACAGGL--TVAALLGHLQAKRQ----------LRKVNSLTYLVS 326 (560)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHH--HHHHHHHHHHHHHH----------CCHHHHHHHHHH
T ss_conf 710132540679999999999987514887600110151478--99999989999753----------021456777777
Q ss_pred HHHHCCCCCEEEEEHHHHHH------HHHCCCCCHH
Q ss_conf 88623698579975889999------9966898889
Q gi|254780414|r 271 LFKGYPNFPLRVVDASERFI------RKLKNIVDPE 300 (520)
Q Consensus 271 ~~~~~~~~~l~~vda~~~Fl------~~L~gv~DPE 300 (520)
++-..+.-+.. .-+-|.-| +.-+||-|=.
T Consensus 327 lLDs~~~~~~~-LF~DEQTlEaaKR~SYQ~GVLdG~ 361 (560)
T TIGR01839 327 LLDSKMESPAA-LFADEQTLEAAKRRSYQAGVLDGS 361 (560)
T ss_pred HHHCCCCCCEE-EEEHHHHHHHHHHHHHHCCCCCHH
T ss_conf 66314566401-110034566653234421564523
No 267
>pfam07882 Fucose_iso_N2 L-fucose isomerase, second N-terminal domain. The members of this family are similar to L-fucose isomerase expressed by E. coli (EC:5.3.1.3). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta- sheets with surrounding alpha helices. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues.
Probab=55.12 E-value=16 Score=16.86 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=28.1
Q ss_pred HHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99886236985799758899999966898889999887
Q gi|254780414|r 269 ISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVI 306 (520)
Q Consensus 269 ~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiI 306 (520)
.++|.+.+|+.+..||.++.--..=.|+-|||+-.|..
T Consensus 20 ~~f~q~ylGmrvE~VDm~Ei~RR~~~~iyD~~E~e~Al 57 (181)
T pfam07882 20 PDFFQDYLGMRVEYVDMTEIVRRIEEEIYDPEEFEKAL 57 (181)
T ss_pred HHHHHHHHCCCCCEECHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999995992001229999999872688999999999
No 268
>TIGR01383 not_thiJ DJ-1 family protein; InterPro: IPR006287 These sequences represent the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by IPR006286 from INTERPRO, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras . Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ (thiamine pyridinylase), a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of Escherichia coli. The ThiJ designation for this family may be spurious; the cited paper refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus. This group of proteins are classified as either DJ-1 putative peptidases or non-peptidase homologs in MEROPS peptidase family C56 (clan PC(C)). .
Probab=54.84 E-value=8.7 Score=18.71 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=39.8
Q ss_pred ECCCCCHHHHHHCCCCEEEECCC-CCCCCCCCCCCCC---HHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 52898988997239979999853-8899999997537---68980899889977899998997
Q gi|254780414|r 37 IAFKNALDYFKEQNPQAIILSGS-PASSLDIDSPQIP---KEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 37 ~P~~~~~e~i~~~~p~GIILSGG-P~SV~d~~ap~~~---~~I~~~~iPILGICyG~QlLa~~ 95 (520)
+-.|.++++++..++|.|+|.|| |.|-+=.|+-.+. ++.-+.+.=|=.||=.==++..+
T Consensus 53 ~~AD~~l~d~~~~~fD~ivLPGG~pGa~nL~~S~~l~~~lk~~~~~gkl~AAICAaP~vll~~ 115 (186)
T TIGR01383 53 ILADASLEDVDDEEFDLIVLPGGMPGAENLRDSKLLENLLKKQESKGKLVAAICAAPIVLLAA 115 (186)
T ss_pred ECCCCCHHHCCCCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHC
T ss_conf 734871412577776778936982266642025789999999997499388420458986302
No 269
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=54.83 E-value=16 Score=16.82 Aligned_cols=58 Identities=28% Similarity=0.415 Sum_probs=39.9
Q ss_pred CCCCCCCCEEEEEECCC----C-----H--HHHHHHHHHHCCCEEEEECCCC------------------CHH----HHH
Q ss_conf 98634488699998897----0-----5--7889988886594069852898------------------988----997
Q gi|254780414|r 1 MHKRERSSKVLIIDFGS----Q-----F--TQLIARRVRESKVYCEVIAFKN------------------ALD----YFK 47 (520)
Q Consensus 1 m~~~~~~~~IlIlDfGS----Q-----y--tqLIaRriRelgVyseI~P~~~------------------~~e----~i~ 47 (520)
|.+...-.|||||-=|. | | +| ..+.+||.|+.+.++.+|. +.+ -|.
T Consensus 1 MP~~~~ikkvLviGsGp~~IGqa~EfDysg~q-a~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~ 79 (1063)
T PRK05294 1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQ-ACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIE 79 (1063)
T ss_pred CCCCCCCCEEEEECCCCCHHCCHHHHHHHHHH-HHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHH
T ss_conf 99877878899989882510372332656999-99999986998999879854410787766437872798999999999
Q ss_pred HCCCCEEEECCC
Q ss_conf 239979999853
Q gi|254780414|r 48 EQNPQAIILSGS 59 (520)
Q Consensus 48 ~~~p~GIILSGG 59 (520)
..+|+||+.+=|
T Consensus 80 ~E~Pd~il~~~G 91 (1063)
T PRK05294 80 KERPDAILPTMG 91 (1063)
T ss_pred HHCCCEEEECCC
T ss_conf 759997886677
No 270
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=54.77 E-value=16 Score=16.82 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=53.9
Q ss_pred HHHHHHHC-CCCEEEEECCCCHHHHHHHHHHH-----HCC-CCEEEEEECCCC-CCCCCHHHHHHHHHHCCCCCEEEEEH
Q ss_conf 99976504-44036640564047799999986-----223-656999973895-51562789999886236985799758
Q gi|254780414|r 214 SRIKEQVG-NERVICAVSGGVDSTVAAFLIYE-----AIG-INLTCVLVDHGF-MRKNEVENIISLFKGYPNFPLRVVDA 285 (520)
Q Consensus 214 ~~Ir~~vg-~~kVi~~lSGGVDStV~A~Ll~k-----Aig-~~l~~vfVD~Gl-lRknE~~~v~~~~~~~~~~~l~~vda 285 (520)
+.|.+.+. ++++.++||||---.-....|.+ .+- ++++..++|-=. +-.+..+-....+++.+--++ -+..
T Consensus 9 ~~i~~~i~~~~~~~ialsGG~tP~~~y~~L~~~~~~~~i~w~~v~~f~~DE~~~v~~~~~~Sn~~~~~~~ll~~~-~i~~ 87 (232)
T cd01399 9 ELIAELIREKPPAVLGLATGSTPLGVYEELIELHKEGGLSFSNVTTFNLDEYVGLPPDHPQSYHYFMRENLFDHI-DIKP 87 (232)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCH
T ss_conf 999999997798699989987899999999998863499757938992742347895055889999999864257-9998
Q ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 89999996689-888999988756589999999974399709986
Q gi|254780414|r 286 SERFIRKLKNI-VDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQ 329 (520)
Q Consensus 286 ~~~Fl~~L~gv-~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~Q 329 (520)
+..| .+.|. .|||+- .+-+++..++.++.+++.-
T Consensus 88 ~~i~--~~~~~~~~~~~~--------a~~y~~~i~~~~~~Dl~lL 122 (232)
T cd01399 88 ENIH--IPDGNAADLEAE--------CRRYEALIAEAGGIDLQLL 122 (232)
T ss_pred HHCC--CCCCCCCCHHHH--------HHHHHHHHHHCCCCCEEEE
T ss_conf 9857--889875699999--------9999999987289858998
No 271
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=54.34 E-value=3.5 Score=21.57 Aligned_cols=31 Identities=23% Similarity=0.114 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 0678999999997650444036640564047
Q gi|254780414|r 205 MSSYHKEIVSRIKEQVGNERVICAVSGGVDS 235 (520)
Q Consensus 205 ~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDS 235 (520)
++.|+=..-++|++.+.+..+.-.+|==+=|
T Consensus 697 p~~fi~~~~~~i~~~i~~~~~~~p~~kK~i~ 727 (1552)
T TIGR02386 697 PKKFIVEKGEDIKEVIEKIQVVEPLSKKEIS 727 (1552)
T ss_pred HHHHHHHCCCCHHHHHHHCCCCCCCCCHHHH
T ss_conf 3677631583578899743333665503678
No 272
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=53.87 E-value=5.9 Score=19.94 Aligned_cols=44 Identities=32% Similarity=0.346 Sum_probs=27.7
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 6640564047799999986223656999973895515627899998862
Q gi|254780414|r 226 ICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG 274 (520)
Q Consensus 226 i~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~ 274 (520)
|-|-||-=-||++. ++.+ +|-+-|+|+|.||..|..+.......
T Consensus 4 IdGpagsGKsT~ak-~lA~----~l~~~~ldtG~ir~~ev~~~~s~ia~ 47 (147)
T cd02020 4 IDGPAGSGKSTVAK-LLAK----KLGLPYLDTGGIRTEEVGKLASEVAA 47 (147)
T ss_pred EECCCCCCHHHHHH-HHHH----HHCCEEECCCCCCCHHHHHHHHHHCC
T ss_conf 86899789899999-9999----90990776654254899899999819
No 273
>PRK06608 threonine dehydratase; Provisional
Probab=53.84 E-value=16 Score=16.88 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHH
Q ss_conf 44036640564047799999986223656999973895515627899998862369857997588999999668988899
Q gi|254780414|r 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPET 301 (520)
Q Consensus 222 ~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~ 301 (520)
.+.|+|+=||--- .+.++..+++|-+.+.+ |-.+=++.-.+..+. +|-+++.++..+.--.+.+- .+
T Consensus 73 ~~~vv~aSsGNhG--~alA~aa~~~G~~~~I~------mP~~~~~~Ki~~i~~-~GAeVi~~~~~~~~~~~~~~----~~ 139 (330)
T PRK06608 73 PDKIVAYSTGNHG--IAVAYASKLFGIKTRIY------LPLNTSKVKQQAALY-YGGEVILTNTRQEAEEKAKE----DE 139 (330)
T ss_pred CCCEEEECCCCHH--HHHHHHHHHCCCCEEEE------ECCCCCHHHHHHHHH-CCCEEEEECCHHHHHHHHHH----HH
T ss_conf 7837986788669--99999998549863898------456588999999998-79999998985899999998----61
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf 998875658999999997439970998646220245420
Q gi|254780414|r 302 KRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESI 340 (520)
Q Consensus 302 KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~ 340 (520)
+ =|..|+.-|+. ...+-.|||+-..++|.-
T Consensus 140 ~---~~~~~i~~~d~------~~~iaG~~Ti~~Ei~eq~ 169 (330)
T PRK06608 140 K---QGFYYIHPSDS------DSIIAGAGTLCYEALQQL 169 (330)
T ss_pred H---CCCEEECCCCC------CCHHCCCCHHHHHHHHHH
T ss_conf 4---58889578788------001046433999999981
No 274
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family; InterPro: IPR005689 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane . The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Toc750, a core component of the Toc complex. This protein is deeply embedded in the outer membrane and forms the voltage-dependent translocation channel . Toc75 itself appears to be capable of at least some discrimination between substrate and non-substrate proteins, with recognition based on based on both conformational and electrostatic interactions. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=53.71 E-value=11 Score=18.07 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=25.0
Q ss_pred HCCCCEEEEECCC-CCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCC-----CHHHHHHHH
Q ss_conf 4399709986462-202454202467776303443023201132032-----022378987
Q gi|254780414|r 320 KIGGAQFLGQGTL-YPDVIESISFFGGPSSIIKSHHNVGGLPEHMDM-----KLVEPLKEL 374 (520)
Q Consensus 320 ~~~~~~~L~QGTl-ypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~-----~liEPl~~l 374 (520)
+....|=.+-|-= .| +.-| ...+| ..-=.|-|.+|+-+.+.. ..+.|=++|
T Consensus 391 evsteWSI~~G~GG~P-~~~S-~~~~G--ti~f~~RNL~G~N~~l~~~~~~~nflnPQ~~L 447 (768)
T TIGR00992 391 EVSTEWSIVPGRGGAP-ILAS-SQLGG--TITFEERNLQGLNRSLGGSVTVSNFLNPQDDL 447 (768)
T ss_pred EEEEEEEEECCCCCCC-CEEC-CCCCC--EEEEEECCCCCCCCEEEEEEEECCCCCCCHHH
T ss_conf 3310025514888864-1000-26762--16772015677561478988871445731131
No 275
>PRK05282 peptidase E; Validated
Probab=53.43 E-value=17 Score=16.67 Aligned_cols=88 Identities=14% Similarity=0.306 Sum_probs=57.8
Q ss_pred CCCEEEEEECC------CCHHHHHHHHHHHCCCEEE-EECCCCCHHHHHHCCCCEEEECCCCC-----CCCCCCCCCCCH
Q ss_conf 48869999889------7057889988886594069-85289898899723997999985388-----999999975376
Q gi|254780414|r 6 RSSKVLIIDFG------SQFTQLIARRVRESKVYCE-VIAFKNALDYFKEQNPQAIILSGSPA-----SSLDIDSPQIPK 73 (520)
Q Consensus 6 ~~~~IlIlDfG------SQytqLIaRriRelgVyse-I~P~~~~~e~i~~~~p~GIILSGGP~-----SV~d~~ap~~~~ 73 (520)
..++|+-+-|- ..||+.....+..+|+-.. |+.++.+.+.+.. -++|.++||.. ..++.+.-..-+
T Consensus 30 ~~k~ilFIPyA~~~~~~d~Yt~~v~~af~~lg~~v~gih~~~dp~~AI~~--Ad~I~vgGGNTF~Ll~~L~~~gl~~~ir 107 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEVLAPLGIEVTGIHRVEDPVAAIEN--ADGIIVGGGNTFQLLKQLYERGLLAPIR 107 (233)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH--CCEEEECCCCHHHHHHHHHHCCCHHHHH
T ss_conf 79659997588887988999999999998669828876245898999974--9979986973999999999858299999
Q ss_pred HHHHCCCCEEEECHHHHHHHHH
Q ss_conf 8980899889977899998997
Q gi|254780414|r 74 EILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 74 ~I~~~~iPILGICyG~QlLa~~ 95 (520)
+..+.+.|.+|.-=|.-+.+..
T Consensus 108 ~~V~~G~pYiG~SAGsnia~pt 129 (233)
T PRK05282 108 EAVKNGTPYIGWSAGANVACPT 129 (233)
T ss_pred HHHHCCCCEEEECCHHHHCCCC
T ss_conf 9998499779626415405786
No 276
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.62 E-value=13 Score=17.40 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=41.3
Q ss_pred CEEEEEEC-C----CCHHHHHHHHHHHCCCEEEEEC-------C-C---CCHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 86999988-9----7057889988886594069852-------8-9---8988997239979999853889999999753
Q gi|254780414|r 8 SKVLIIDF-G----SQFTQLIARRVRESKVYCEVIA-------F-K---NALDYFKEQNPQAIILSGSPASSLDIDSPQI 71 (520)
Q Consensus 8 ~~IlIlDf-G----SQytqLIaRriRelgVyseI~P-------~-~---~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~ 71 (520)
.+|.|+-- . .+..+.|.+.+++.|+.+-+-+ . + .++.++. .+.+-+|--||-.+ -.+.
T Consensus 6 k~IgIi~k~~~~~a~~~~~~l~~~L~~~g~~v~ld~~~a~~l~~~~~~~~~~~~~~-~~~Dlvi~lGGDGT-----~L~a 79 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIAHELQLKNVKTGTLAEIG-QQADLAVVVGGDGN-----MLGA 79 (292)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCHHHHC-CCCCEEEEECCCHH-----HHHH
T ss_conf 89999952798589999999999999789989983478765299865547866853-05689999777889-----9999
Q ss_pred CHHHHHCCCCEEEECHHH
Q ss_conf 768980899889977899
Q gi|254780414|r 72 PKEILESNIPLLGICYGQ 89 (520)
Q Consensus 72 ~~~I~~~~iPILGICyG~ 89 (520)
.......++|||||-+|.
T Consensus 80 ar~~~~~~~PilGIN~G~ 97 (292)
T PRK03378 80 ARTLARYDIKVIGINRGN 97 (292)
T ss_pred HHHHCCCCCCEEEEECCC
T ss_conf 998543699689883798
No 277
>pfam05350 GSK-3_bind Glycogen synthase kinase-3 binding. Glycogen synthase kinase-3 (GSK-3) sequentially phosphorylates four serine residues on glycogen synthase (GS), in the sequence SxxxSxxxSxxx-SxxxS(p), by recognising and phosphorylating the first serine in the sequence motif SxxxS(P) (where S(p) represents a phosphoserine). Interaction of GSK-3 with a peptide derived from GSK-3 binding protein (this family) prevents GSK-3 interaction with Axin. This interaction thereby inhibits the Axin-dependent phosphorylation of beta-catenin by GSK-3.
Probab=52.38 E-value=11 Score=18.09 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCC
Q ss_conf 9873899999999819998894268889831
Q gi|254780414|r 372 KELFKDEVRLLGKELRLPDSFVERHPCPGPG 402 (520)
Q Consensus 372 ~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPG 402 (520)
-+|-|.-||.|-..-.+|. ||||||+
T Consensus 135 GnLIkEAVrRlq~~~~~p~-----~~~~g~~ 160 (160)
T pfam05350 135 GNLIKEAVRRLQFAAEPPD-----HDIPGSV 160 (160)
T ss_pred CCHHHHHHHHHHHCCCCCC-----CCCCCCC
T ss_conf 5089999999883157987-----7677879
No 278
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.96 E-value=18 Score=16.51 Aligned_cols=67 Identities=22% Similarity=0.416 Sum_probs=41.3
Q ss_pred EEEECCCCHH----HHHHHHHHHCCCEEEEECCCCC---HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 9998897057----8899888865940698528989---88997239979999853889999999753768980899889
Q gi|254780414|r 11 LIIDFGSQFT----QLIARRVRESKVYCEVIAFKNA---LDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 11 lIlDfGSQyt----qLIaRriRelgVyseI~P~~~~---~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
++.|....|. +=|.+..|+.|.+..+...+.. ++.+....++|||.+. ..+.....+.+.++|+.
T Consensus 4 ll~disn~f~~~vi~GIe~~a~~~Gy~~il~~~~~~~~~~~~l~~~~VDGiI~~~--------~~~~~~~~l~~~~iPvV 75 (265)
T cd01543 4 LLVETSSSYGRGVLRGIARYAREHGPWSIYLEPRGLQEPLRWLKDWQGDGIIARI--------DDPEMAEALQKLGIPVV 75 (265)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEC--------CCHHHHHHHHHCCCCEE
T ss_conf 9963887779999999999999749989998382348999999837988899727--------99899999984799599
Q ss_pred EE
Q ss_conf 97
Q gi|254780414|r 84 GI 85 (520)
Q Consensus 84 GI 85 (520)
-|
T Consensus 76 ~i 77 (265)
T cd01543 76 DV 77 (265)
T ss_pred EE
T ss_conf 98
No 279
>pfam08010 Phage_30_3 Bacteriophage protein GP30.3. Proteins in this family are bacteriophage GP30.3 proteins. Their function is poorly characterized.
Probab=51.60 E-value=18 Score=16.48 Aligned_cols=43 Identities=37% Similarity=0.546 Sum_probs=27.2
Q ss_pred EHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCC
Q ss_conf 588999999668988899998875658999999997439--97099864622
Q gi|254780414|r 284 DASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG--GAQFLGQGTLY 333 (520)
Q Consensus 284 da~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~--~~~~L~QGTly 333 (520)
..-|-||..|| ..+||++|.+-. .+-++|+..+ ..+|=+| |||
T Consensus 30 as~EGFLQ~lK-fk~pe~Qr~v~~-----l~Gk~AK~~G~k~~~~~~q-tLy 74 (146)
T pfam08010 30 ASMEGFLQSLK-FKNPEMQRHVCG-----LVGKAAKFRGKKKKWWRTQ-TLY 74 (146)
T ss_pred CCHHHHHHHCC-CCCHHHHHHHHH-----HHHHHHHHCCCHHHHCCCC-CEE
T ss_conf 21899987724-798789899998-----7238888636244422466-047
No 280
>PRK04155 chaperone protein HchA; Provisional
Probab=51.50 E-value=13 Score=17.51 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=14.6
Q ss_pred CCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHH
Q ss_conf 622024542024677763034430232011320320223789
Q gi|254780414|r 331 TLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLK 372 (520)
Q Consensus 331 TlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~ 372 (520)
|.+||-.|.+.. -.|.||..|.+.+-|-|+
T Consensus 212 t~FpDa~d~~t~------------~iGympG~l~w~l~e~L~ 241 (288)
T PRK04155 212 CVFPDALDKQTP------------EIGYMPGHLTWLFGEELK 241 (288)
T ss_pred EECCCHHHHCCC------------CCCCCCCCCCCHHHHHHH
T ss_conf 723986884464------------225578776307999998
No 281
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=50.69 E-value=18 Score=16.38 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred CCCEEEEEECCC----CHHHHHHHHHHHCCCEEEEECCCC---CHHHH-HHCCCCEEEECCCCCCCCC---CCC--CCCC
Q ss_conf 488699998897----057889988886594069852898---98899-7239979999853889999---999--7537
Q gi|254780414|r 6 RSSKVLIIDFGS----QFTQLIARRVRESKVYCEVIAFKN---ALDYF-KEQNPQAIILSGSPASSLD---IDS--PQIP 72 (520)
Q Consensus 6 ~~~~IlIlDfGS----QytqLIaRriRelgVyseI~P~~~---~~e~i-~~~~p~GIILSGGP~SV~d---~~a--p~~~ 72 (520)
.+.+|+++...| -|.....++.+.+|+....++... +.+.. .-.+.++|+++||..+-+- .+. ...-
T Consensus 28 ~~~~i~~iptAs~~~~~~~~~~~~~~~~lG~~~~~l~~~~~a~~~~~~~~l~~ad~i~~~GG~~~~~~~~~~~t~~~~~l 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCHHHHH
T ss_conf 99649999489888089999999999974994887512256787169999971999998898899999999748899999
Q ss_pred HHHHHCCCCEEEECHHHHHHHHH
Q ss_conf 68980899889977899998997
Q gi|254780414|r 73 KEILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 73 ~~I~~~~iPILGICyG~QlLa~~ 95 (520)
.+.+..++++.|.-=|+-++...
T Consensus 108 ~~~~~~G~v~~G~SAGa~~~~~~ 130 (210)
T cd03129 108 LKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHCCCEEEEECHHHHHCCCC
T ss_conf 99998499099735578862876
No 282
>CHL00148 orf27 Ycf27; Reviewed
Probab=50.10 E-value=19 Score=16.32 Aligned_cols=93 Identities=23% Similarity=0.400 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHCCCCEEEECCC-CCCCCCCCCCCCCHHHH-HCC
Q ss_conf 6344886999988970578899888865940698528-98988997239979999853-88999999975376898-089
Q gi|254780414|r 3 KRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAF-KNALDYFKEQNPQAIILSGS-PASSLDIDSPQIPKEIL-ESN 79 (520)
Q Consensus 3 ~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~-~~~~e~i~~~~p~GIILSGG-P~SV~d~~ap~~~~~I~-~~~ 79 (520)
++..+.||||+|=-.+..++|...++..|..+..... ....+.+....|+-|||-=+ | +.+...+-+++- ..+
T Consensus 2 ~~~~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~LP----~~dG~~l~~~iR~~~~ 77 (240)
T CHL00148 2 KKSSKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMP----KLDGYGVCQEIRKESD 77 (240)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCC----CCCCCEEEECCCCCCC
T ss_conf 989998299993989999999999997899999989999999999747999999979999----8886630541403799
Q ss_pred CCEEEEC----HHHHHHHHHCCCE
Q ss_conf 9889977----8999989970969
Q gi|254780414|r 80 IPLLGIC----YGQQIMCQSLGGK 99 (520)
Q Consensus 80 iPILGIC----yG~QlLa~~~GG~ 99 (520)
+||+=+. ---++.|...|+.
T Consensus 78 ~PII~LTa~~~~~d~v~gl~~GAD 101 (240)
T CHL00148 78 VPIIMLTALGDVSDRITGLELGAD 101 (240)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCC
T ss_conf 548998167898999999976997
No 283
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.02 E-value=17 Score=16.68 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHCCCEEEEEC-------CC--CCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHH
Q ss_conf 057889988886594069852-------89--898899723997999985388999999975376898089988997789
Q gi|254780414|r 18 QFTQLIARRVRESKVYCEVIA-------FK--NALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 18 QytqLIaRriRelgVyseI~P-------~~--~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG 88 (520)
+..+.+++.+.+.|+.+-+-+ .. .+...+...+++-+|--||-.++. +. ......++|||||-+|
T Consensus 16 ~~a~~l~~~L~~~g~~v~ld~~~~~~~~~~~~~~~~~~~~~~~Dlvi~lGGDGT~L-----~a-~~~~~~~iPilGiN~G 89 (278)
T PRK03708 16 KLAYRVYDFLKVSGYEVVVDSDTYEHLPQFSEEDVLPLEEFDVDFILAIGGDGTIL-----RI-EHKTKKEIPILSINMG 89 (278)
T ss_pred HHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHH-----HH-HHHCCCCCCEEEEECC
T ss_conf 99999999999889989997478656665555676754357878999987868999-----99-9964789988988358
Q ss_pred H
Q ss_conf 9
Q gi|254780414|r 89 Q 89 (520)
Q Consensus 89 ~ 89 (520)
.
T Consensus 90 ~ 90 (278)
T PRK03708 90 T 90 (278)
T ss_pred C
T ss_conf 7
No 284
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=49.94 E-value=18 Score=16.41 Aligned_cols=63 Identities=25% Similarity=0.421 Sum_probs=39.2
Q ss_pred HHHHHHHHCCC--CEEE--------EECC---------CCHHHHHHHHHHHHCCCC-----EEEEEECCCCCCCCCHHHH
Q ss_conf 99997650444--0366--------4056---------404779999998622365-----6999973895515627899
Q gi|254780414|r 213 VSRIKEQVGNE--RVIC--------AVSG---------GVDSTVAAFLIYEAIGIN-----LTCVLVDHGFMRKNEVENI 268 (520)
Q Consensus 213 i~~Ir~~vg~~--kVi~--------~lSG---------GVDStV~A~Ll~kAig~~-----l~~vfVD~GllRknE~~~v 268 (520)
+.-||+...|+ ||+. ++|| |+|||++++ .++-++. |=|..||++ ..+.
T Consensus 255 l~Gire~Lrda~~kVVavSPIvG~~~vsGpA~Klm~A~G~dvsa~gV--ae~Y~dfCatG~lD~~vvD~~-----D~~~- 326 (359)
T TIGR01819 255 LPGIREALRDATVKVVAVSPIVGDKPVSGPAGKLMAAVGVDVSAAGV--AEHYGDFCATGLLDVLVVDEA-----DKAD- 326 (359)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCHHHH--HHHHHHHHCCCCEEEEEECCC-----CHHH-
T ss_conf 25689999836973899716406888758434204223436344899--998886520030346786012-----5589-
Q ss_pred HHHHHHCCCCCEEEEE
Q ss_conf 9988623698579975
Q gi|254780414|r 269 ISLFKGYPNFPLRVVD 284 (520)
Q Consensus 269 ~~~~~~~~~~~l~~vd 284 (520)
++.++. +|.....+|
T Consensus 327 ~~r~~~-~Gv~v~~t~ 341 (359)
T TIGR01819 327 LDRVEA-LGVEVVATD 341 (359)
T ss_pred HHHHHH-CCCEEEECC
T ss_conf 999984-796388816
No 285
>pfam01715 IPPT IPP transferase. This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37).
Probab=48.93 E-value=15 Score=16.92 Aligned_cols=98 Identities=14% Similarity=0.330 Sum_probs=56.2
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC--
Q ss_conf 998755010644111406789999999976504440--3664056404779999998622365699997389551562--
Q gi|254780414|r 189 IDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNER--VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE-- 264 (520)
Q Consensus 189 L~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~k--Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE-- 264 (520)
...++++++.....|+...|.+++.+.|.+....++ ++||-|| -=+=|+| +|+--..+
T Consensus 22 ipHhlid~~~~~e~~sv~~f~~~a~~~i~~i~~~~k~PIiVGGTg---lYl~all---------------~g~~~~p~~~ 83 (253)
T pfam01715 22 VPHHLIDILDPTESYSAAEFQRDALEAIAEIRARGKIPLLVGGTG---LYFKALL---------------DGLSDTPSAD 83 (253)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCH---HHHHHHH---------------CCCCCCCCCC
T ss_conf 997545566899876199999999999999996699728983808---9999997---------------6987788877
Q ss_pred ---HHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHH--------HHHHHHHHHHHHHHHH
Q ss_conf ---789999886236985799758899999966898889--------9998875658999999
Q gi|254780414|r 265 ---VENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPE--------TKRKVIGQLFIEVFEE 316 (520)
Q Consensus 265 ---~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE--------~KRkiIG~~Fi~vf~~ 316 (520)
.+++.+.+.. .-.+.+++.|+-+ ||| .+|+|+-. +|||..
T Consensus 84 ~~~r~~~~~~~~~---------~g~~~l~~~L~~~-DP~~a~~i~~nd~~Ri~RA--lEi~~~ 134 (253)
T pfam01715 84 PKVRAKLEEQLEE---------LGNDYLHAELASV-DPEAAAKIHPNDGRRIVRA--LEVFYA 134 (253)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHH-CHHHHHCCCCCCHHHHHHH--HHHHHH
T ss_conf 7799999999998---------5199999999874-9697854796436678999--999999
No 286
>KOG3498 consensus
Probab=48.52 E-value=13 Score=17.46 Aligned_cols=20 Identities=40% Similarity=0.791 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 20223789873899999999
Q gi|254780414|r 365 MKLVEPLKELFKDEVRLLGK 384 (520)
Q Consensus 365 ~~liEPl~~l~KdEVR~lg~ 384 (520)
.+++||+|+++||-.|-+-|
T Consensus 5 ~~~~~~~~~f~k~s~rf~kr 24 (67)
T KOG3498 5 DQLVEPLRDFAKDSIRFVKR 24 (67)
T ss_pred HHHCCHHHHHHHHHHHHHHH
T ss_conf 77500389999999999998
No 287
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=47.96 E-value=20 Score=16.09 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCCHHHHHHCCCCEEEECCCCCCC---CCCCCCCCCH---HHHHCCCCEEEECHHHHHHHHH
Q ss_conf 989889972399799998538899---9999975376---8980899889977899998997
Q gi|254780414|r 40 KNALDYFKEQNPQAIILSGSPASS---LDIDSPQIPK---EILESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 40 ~~~~e~i~~~~p~GIILSGGP~SV---~d~~ap~~~~---~I~~~~iPILGICyG~QlLa~~ 95 (520)
+.++++. ..++-+|+.|+..+. .....|.+.. ...+.+.++.|||-|.-+||.+
T Consensus 61 d~~~~~~--~~~D~livpg~~~~~~~~~~~~~~~l~~~L~~~~~~g~~i~sictGa~~LA~a 120 (195)
T cd03138 61 DATLADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCHHHC--CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCHHHHHHHHC
T ss_conf 8684456--65688997576678630123369999999998665271784165899999973
No 288
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=47.66 E-value=19 Score=16.27 Aligned_cols=57 Identities=12% Similarity=0.238 Sum_probs=25.7
Q ss_pred EEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1232398317889863500112465212221520257799875501064411140678999999997650
Q gi|254780414|r 151 VIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQV 220 (520)
Q Consensus 151 viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~v 220 (520)
+|++++..+. .+.+-- -+-||..--| +=.++.+|= ++-+.+ +|..++- +.++||+.-
T Consensus 122 II~~~~G~~M-~VY~IP-~L~GV~l~~~-----Q~~~L~~~P--~V~~~K--~T~GDlY--~lE~~~~~~ 178 (294)
T TIGR00683 122 IIDEADGLNM-VVYSIP-ALSGVKLTLD-----QINELVKLP--KVLALK--FTAGDLY--LLERLKKEY 178 (294)
T ss_pred HHHHCCCCCE-EEEECC-CCCCHHHHHH-----HHHHHHHCC--CCEEEE--ECCCHHH--HHHHHHHHC
T ss_conf 9852489823-787453-2012122188-----888875178--721452--0400588--999998755
No 289
>pfam04943 Pox_F11 Poxvirus F11 protein. The protein F11 is an early virus protein.
Probab=47.57 E-value=20 Score=16.05 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=46.1
Q ss_pred CCEEEECCCCCCCEEEEEECCC--CCCC--CCCCCCCCCEEEEEECCCHHHC----CC--CCCCEEECCCCCCEEEEEEC
Q ss_conf 9699986986610366752388--6222--7872665533686002201101----24--44211232398317889863
Q gi|254780414|r 97 GGKTKNSQSREFGRAFIEIKKN--CSLL--KGMWEKGSKQQVWMSHGDQVEH----IP--EGFEVIASSDSTPFAFIADE 166 (520)
Q Consensus 97 GG~V~~~~~~EyG~~~I~i~~~--~~lf--~gl~~~~~~~~VwmSH~D~V~~----lP--~gf~viA~S~~~~iaai~~~ 166 (520)
+|....+..-+|++.++.+... ..++ +|.++....+-|-+.||+...+ .| -||..+--=.|.-++++.-+
T Consensus 55 ~~~~~~~~~~~y~~kkV~i~~~~l~~l~D~eg~Fev~d~~lvkL~HGn~f~~~~~~~~~s~gF~A~ICIkNeG~Sgi~V~ 134 (366)
T pfam04943 55 TGSKTKSTLFTYSWKKVPVDSIKLRFLLDAEGYFEVSDCFLVKLEHGNGFMKGALYVDNSAGFTAVICIKNEGRSGIMVN 134 (366)
T ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCEEHHHEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 75532124432313661256677766512247521124689996136751247511587455079999737870588737
Q ss_pred ----------------CCCEEEEEEEEHHHC
Q ss_conf ----------------500112465212221
Q gi|254780414|r 167 ----------------KRKYYAVQFHPEVVH 181 (520)
Q Consensus 167 ----------------~~~iyGVQFHPEV~h 181 (520)
.+..+|+||=|.+-+
T Consensus 135 ~t~~l~~~m~~Gd~iVsRssrgi~fLPQIgG 165 (366)
T pfam04943 135 HTNVLQTNMQEGDYIVSRSSRGIQFLPQIGG 165 (366)
T ss_pred CCCCEEEEEEECCEEEEEHHHHHHHHHHCCC
T ss_conf 9751355543067999860001232012176
No 290
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=47.09 E-value=9.6 Score=18.41 Aligned_cols=110 Identities=24% Similarity=0.397 Sum_probs=65.8
Q ss_pred HHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC-CEEEEE------
Q ss_conf 99997-6504440366405640477999999862236569999738955156278999988623698-579975------
Q gi|254780414|r 213 VSRIK-EQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNF-PLRVVD------ 284 (520)
Q Consensus 213 i~~Ir-~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~-~l~~vd------ 284 (520)
.+..+ +++.++.|+|-+||| ||-.-|..|.++=--.|+ || +--.|+
T Consensus 290 L~~~~r~ei~gKTVVC~vSGG-----------------------NNDi~R~~Ei~eRsl~y~---GLKhYFiv~FPQRpG 343 (415)
T TIGR02079 290 LEELSREEIKGKTVVCVVSGG-----------------------NNDIERTEEIRERSLLYE---GLKHYFIVRFPQRPG 343 (415)
T ss_pred HHHHCHHCCCCCEEEEEEECC-----------------------CCCCCCCHHHHHHHHHHC---CCCEEEEECCCCCCC
T ss_conf 875122004697279995277-----------------------575331367898888731---770368752789886
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHH-
Q ss_conf 8899999966898889999887565899999999743997099864622024542024677763034430232011320-
Q gi|254780414|r 285 ASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHM- 363 (520)
Q Consensus 285 a~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~- 363 (520)
|=.+||+.+=|=+|- |--|| +.||-.. |.|+..=| --..+.-|--||-++|
T Consensus 344 ALreFln~vLGP~DD-----------IT~FE-Y~KK~nR--------------e~GpaliG--iel~~~~D~~GLL~Rm~ 395 (415)
T TIGR02079 344 ALREFLNDVLGPNDD-----------ITKFE-YTKKSNR--------------ETGPALIG--IELSDKEDFEGLLERMA 395 (415)
T ss_pred HHHHHHHHHCCCCCC-----------CCCCE-EEECCCC--------------CCCCEEEE--EECCCCCHHHHHHHHHH
T ss_conf 368876540678875-----------23310-0020147--------------87877998--75036100677999998
Q ss_pred ----CCCHHHHHHHHHH
Q ss_conf ----3202237898738
Q gi|254780414|r 364 ----DMKLVEPLKELFK 376 (520)
Q Consensus 364 ----~~~liEPl~~l~K 376 (520)
....|+|=+.||.
T Consensus 396 A~~i~Y~~in~n~~L~~ 412 (415)
T TIGR02079 396 AADIHYEAINENSILYE 412 (415)
T ss_pred HCCCCEEEECCCHHHHH
T ss_conf 55994164088538898
No 291
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit; InterPro: IPR012715 Members of this eukaryotic family are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacteria, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=46.81 E-value=16 Score=16.80 Aligned_cols=86 Identities=20% Similarity=0.359 Sum_probs=49.1
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCC-------C-------CEEEEC-CCCCCCC
Q ss_conf 9863448869999889705788998888659406985289-8988997239-------9-------799998-5388999
Q gi|254780414|r 1 MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQN-------P-------QAIILS-GSPASSL 64 (520)
Q Consensus 1 m~~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~-------p-------~GIILS-GGP~SV~ 64 (520)
|.+.-++.||+.|||+=|-.++ .|||- |+.-| ..+|.|.... . .-|||+ +|=
T Consensus 221 Mp~~i~~aKIA~LDF~L~K~k~------~lGv~--i~v~Dp~~LE~IR~~E~dI~k~Ri~~il~AGAnVvLTT~GI---- 288 (540)
T TIGR02340 221 MPKRIKKAKIACLDFNLQKAKM------ALGVQ--IVVDDPAKLEKIRQREADITKERIKKILKAGANVVLTTGGI---- 288 (540)
T ss_pred CCHHHHCCCEEEEECCHHHHHH------HCCEE--EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCH----
T ss_conf 5111101130322035132211------05338--87258578899988888899999999997499189807774----
Q ss_pred CCCCCCCCHHHHHCCCCEEEE--CH--HHHHHHHHCCCEEEEC
Q ss_conf 999975376898089988997--78--9999899709699986
Q gi|254780414|r 65 DIDSPQIPKEILESNIPLLGI--CY--GQQIMCQSLGGKTKNS 103 (520)
Q Consensus 65 d~~ap~~~~~I~~~~iPILGI--Cy--G~QlLa~~~GG~V~~~ 103 (520)
|+ -+.+.+.|.+ ++|+ |- =|.-||++-||++-.+
T Consensus 289 DD---~c~K~fVEag--~mavRR~~K~DLk~iAKATG~~l~~t 326 (540)
T TIGR02340 289 DD---LCLKYFVEAG--AMAVRRCKKEDLKRIAKATGGTLVST 326 (540)
T ss_pred HH---HHHHHHHHCC--EEEEECCCHHHHHHHHHHHCCHHHHH
T ss_conf 56---7612453246--04785047788898876625113013
No 292
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=46.59 E-value=21 Score=15.95 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=43.7
Q ss_pred EEEEEE--CCCCHHHHHHHH----HHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 699998--897057889988----88659406985289898-------89972399799998538899999997537689
Q gi|254780414|r 9 KVLIID--FGSQFTQLIARR----VRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEI 75 (520)
Q Consensus 9 ~IlIlD--fGSQytqLIaRr----iRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I 75 (520)
||.++= +...|-+.+.+- -.++|+...+...+.+. +.+...+++|||++....+. -.|. -+++
T Consensus 1 kIa~~~~~~~~~f~~~~~~G~~~~A~~~G~~~~v~d~~~d~~~Q~~~i~~~i~~~vDgIii~p~d~~~---~~~~-l~~a 76 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEV---LKPW-VKRA 76 (273)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH---HHHH-HHHH
T ss_conf 98999717889799999999999999749989997399999999999999998599999994687144---4899-9999
Q ss_pred HHCCCCEEEE
Q ss_conf 8089988997
Q gi|254780414|r 76 LESNIPLLGI 85 (520)
Q Consensus 76 ~~~~iPILGI 85 (520)
.+.+|||..+
T Consensus 77 ~~aGIPVV~~ 86 (273)
T cd06305 77 LDAGIPVVAF 86 (273)
T ss_pred HHCCCCEEEE
T ss_conf 9859978998
No 293
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.23 E-value=14 Score=17.25 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHH-------------HHHHHHCCCEEE------------ECCC
Q ss_conf 979999853889999999753768980899889977899-------------998997096999------------8698
Q gi|254780414|r 51 PQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQ-------------QIMCQSLGGKTK------------NSQS 105 (520)
Q Consensus 51 p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~-------------QlLa~~~GG~V~------------~~~~ 105 (520)
.+-+|--||-.+ -.+....+...++|||||-+|. +.+...+-|+.. +...
T Consensus 69 ~Dl~IvlGGDGT-----~L~aar~~~~~~iPilGIN~G~LGFLt~i~~~~~~~~l~~il~g~y~ie~R~~L~~~v~~~~~ 143 (305)
T PRK02649 69 MKFAIVLGGDGT-----VLSAARQTAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQLLAGQYTIEERTMLTVSVMRGDQ 143 (305)
T ss_pred CCEEEEECCCHH-----HHHHHHHHCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCC
T ss_conf 339999837699-----999999853369978989448623404479889999999998299658886568999704895
Q ss_pred CCC---CEEEEEECCCC--CCCCCCCCCCCCEEEEEECCCHH-HCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHH
Q ss_conf 661---03667523886--22278726655336860022011-0124442112323983178898635001124652122
Q gi|254780414|r 106 REF---GRAFIEIKKNC--SLLKGMWEKGSKQQVWMSHGDQV-EHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179 (520)
Q Consensus 106 ~Ey---G~~~I~i~~~~--~lf~gl~~~~~~~~VwmSH~D~V-~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV 179 (520)
.-+ .-.++.+.+.. .+. .+.-.-+...+...++|.+ ..-|.|-+.-+-|..+||- +.+ +-+++.-|=.
T Consensus 144 ~~~~~~ALNdvvi~r~~~~~mi-~~~v~id~~~v~~~~~DGlIVsTPTGSTAYslSAGGPIv---~P~--~~~~vltPI~ 217 (305)
T PRK02649 144 LRWEALSLNEMVLHREPLTSMC-HFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVI---TPD--VPVLQLTPIC 217 (305)
T ss_pred EEEEEEECCEEEEECCCCCCEE-EEEEEECCEEEEEEECCEEEEECCCCHHHHHHHCCCCCC---CCC--CCEEEEECCC
T ss_conf 0300344141999657876518-999984999989996477999578870450553699540---799--8759995367
Q ss_pred HCCCHH
Q ss_conf 215202
Q gi|254780414|r 180 VHTVGG 185 (520)
Q Consensus 180 ~hT~~G 185 (520)
-||-.-
T Consensus 218 PHsL~~ 223 (305)
T PRK02649 218 PHSLAS 223 (305)
T ss_pred CCCCCC
T ss_conf 664678
No 294
>PRK12338 hypothetical protein; Provisional
Probab=46.07 E-value=12 Score=17.60 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=66.7
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEH----HHHHHHHHCCCCCHHHHHH
Q ss_conf 056404779999998622365699997389551562789999886236985799758----8999999668988899998
Q gi|254780414|r 229 VSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDA----SERFIRKLKNIVDPETKRK 304 (520)
Q Consensus 229 lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda----~~~Fl~~L~gv~DPE~KRk 304 (520)
=.--||+||+.. +..|-....-++.+|++=+. +.+-+..+++ |--+.-+.. -..-|.+--||.|+++.
T Consensus 189 ~N~nid~sV~~i--~~~I~~~~~~~~~~hsVddl---~~e~eII~~~-~~~i~dI~y~ipgfk~pl~r~v~v~d~~e~-- 260 (320)
T PRK12338 189 KNDDIDRTVSKV--LSVIREVSVVVKLVHSVEDL---DVEDEIIKEN-NGRITDISYPIPGFKDPLKRSVNIYDRDEA-- 260 (320)
T ss_pred CCCCHHHHHHHH--HHHHHHHHEEEECCCCHHHH---HHHHHHHHHC-CCEEEEEEECCCCCCCCCEEECCCCCHHHH--
T ss_conf 476355689999--99999873465226768888---8878999973-975875100288757431234477870789--
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHH
Q ss_conf 875658999999997439970998646220245420246777630344302320113203202237898
Q gi|254780414|r 305 VIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKE 373 (520)
Q Consensus 305 iIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~ 373 (520)
+.||++.+++-++-.. -++||. .++.+-||+=-+.-++.++ .++|-|++
T Consensus 261 ---d~Fik~ln~~p~~ke~-----l~~lY~-----------lsn~vhsh~I~aPD~esl~-~ii~eL~~ 309 (320)
T PRK12338 261 ---DKFIKILNEEKKSKED-----LKHLYS-----------LSNNVHSHKICAPDEESLN-RIIEELRE 309 (320)
T ss_pred ---HHHHHHHHCCHHHHHH-----HHHHHH-----------HCCCCEEEEEECCCHHHHH-HHHHHHHH
T ss_conf ---9999998308556789-----999998-----------6167325775179979999-99999886
No 295
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=45.77 E-value=22 Score=15.86 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=58.7
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHH-C
Q ss_conf 986344886999988970578899888865940698528-98988997239979999853889999999753768980-8
Q gi|254780414|r 1 MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAF-KNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILE-S 78 (520)
Q Consensus 1 m~~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~-~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~-~ 78 (520)
|.-.+...|||++|=--++.+.+...++..|..+..... ....+.+....|+-||+-=..- +.+...+-+.+-+ .
T Consensus 4 ~~~~~~~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp---~~~Gl~l~~~lr~~~ 80 (240)
T PRK10710 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLP---GTDGLTLCREIRRFS 80 (240)
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC---CCCCCCCHHHHHCCC
T ss_conf 99999988799992989999999999998899999989999999999737998999879998---887763211221157
Q ss_pred CCCEEEECHHH----HHHHHHCCCE
Q ss_conf 99889977899----9989970969
Q gi|254780414|r 79 NIPLLGICYGQ----QIMCQSLGGK 99 (520)
Q Consensus 79 ~iPILGICyG~----QlLa~~~GG~ 99 (520)
++||+=+.--. ++.|...|+.
T Consensus 81 ~~piI~lta~~~~~~~~~al~~GAd 105 (240)
T PRK10710 81 DIPIVMVTAKIEEIDRLLGLEIGAD 105 (240)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 6468998167888999999986998
No 296
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.28 E-value=22 Score=15.81 Aligned_cols=62 Identities=6% Similarity=0.106 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 05788998888659406985289898-------899723997999985388999999975376898089988997
Q gi|254780414|r 18 QFTQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 18 QytqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
+.-+-|.+..++.|+...+...+.+. +.+...+++|||+.++.. .......+.+.++|+.-|
T Consensus 16 ~l~~gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~~~~------~~~~~~~l~~~~iPvV~i 84 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPEL------TSAQRAALRRTGIPFVVV 84 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHCCCCEEEE
T ss_conf 999999999998499899997999969999999999954999999906889------999999999749999998
No 297
>PRK10991 fucI L-fucose isomerase; Provisional
Probab=44.28 E-value=23 Score=15.71 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECC----CCCHHHHHHH
Q ss_conf 2237898738999999998199988942688898311122100----0367899999
Q gi|254780414|r 367 LVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIG----EITEERINIL 419 (520)
Q Consensus 367 liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g----~vt~e~~~i~ 419 (520)
.+-|.=++-.+|+.+.=..---+... +-=|+|-|++-|-+- .+|--|++++
T Consensus 410 ~mKp~w~it~~d~~~~l~aT~w~pa~--~eYFrGGGfSs~F~T~g~mPvTm~R~Nlv 464 (588)
T PRK10991 410 TMKPHWEISEQEADACLAATEWCPAI--HEYFRGGGYSSRFLTEGGVPFTMTRVNII 464 (588)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHH--HCCCCCCCCCEEEECCCCCCEEEEEEEHH
T ss_conf 55676657999999998607047402--11025897430221279972365433113
No 298
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=43.78 E-value=23 Score=15.65 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=45.0
Q ss_pred CCCCEEEEE--E----CCCCHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 448869999--8----89705788998888659406985289898-------8997239979999853889999999753
Q gi|254780414|r 5 ERSSKVLII--D----FGSQFTQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQI 71 (520)
Q Consensus 5 ~~~~~IlIl--D----fGSQytqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~ 71 (520)
.++..|.++ | |=++.-+-|.+..++.|....+.+.+.+. +.+....++|||+.| .. .+ ...
T Consensus 56 ~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~----~~-~~~ 129 (333)
T COG1609 56 GRTKTIGLVVPDITNPFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG-ER----PN-DSL 129 (333)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CC-HHH
T ss_conf 7788899994687775899999999999998399899983789869999999999876989899935-87----88-088
Q ss_pred CHHHHHCCCCEEEE
Q ss_conf 76898089988997
Q gi|254780414|r 72 PKEILESNIPLLGI 85 (520)
Q Consensus 72 ~~~I~~~~iPILGI 85 (520)
...+.+.++|+.-|
T Consensus 130 ~~~l~~~~~P~V~i 143 (333)
T COG1609 130 LELLAAAGIPVVVI 143 (333)
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99998659998999
No 299
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=43.70 E-value=23 Score=15.65 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCHH-------HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 7057889988886594069852898988-------99723997999985388999999975376898089988997
Q gi|254780414|r 17 SQFTQLIARRVRESKVYCEVIAFKNALD-------YFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 17 SQytqLIaRriRelgVyseI~P~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
++..+-|.+.+++.|+...+...+.+.+ .+...+++|||+.+... +.+ .-..+.+.++|+.-+
T Consensus 15 ~~~~~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~~~~~-----~~~-~~~~l~~~~iPvV~i 84 (265)
T cd06299 15 ASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQ-----SAE-QLEDLLKRGIPVVFV 84 (265)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCC-----CHH-HHHHHHHCCCCEEEE
T ss_conf 9999999999998599899997899989999999999947999999980679-----989-999999669989983
No 300
>TIGR02635 RhaI_grampos L-rhamnose isomerase; InterPro: IPR013457 The proteins in this entry are closely related to the L-rhamnose isomerases (IPR013451 from INTERPRO) found in Pseudomonas stutzeri and in a number of the Rhizobiales. They are encoded in similar genomic contexts, close to genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (IPR013454 from INTERPRO), sugar kinases, and sugar transporters..
Probab=43.28 E-value=24 Score=15.60 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=87.5
Q ss_pred CCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCC-------------------HHH
Q ss_conf 4211232398317889863500112465212221520257799875501064411140-------------------678
Q gi|254780414|r 148 GFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVM-------------------SSY 208 (520)
Q Consensus 148 gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~-------------------~~~ 208 (520)
|.++=|-+.| -|++.+++ ||=--||+-.==.+-..=+=.-+ +|++-..+=.+ ++.
T Consensus 82 Gl~~GaiNpN----lFQDDDYK-fGSlThp~~~iR~KAi~h~LeCv-dIa~~tGSkdisLWLADGTnYPGQdD~R~Rk~R 155 (382)
T TIGR02635 82 GLKLGAINPN----LFQDDDYK-FGSLTHPDKRIRRKAIDHLLECV-DIAKKTGSKDISLWLADGTNYPGQDDIRKRKDR 155 (382)
T ss_pred CCCCCCCCCC----CCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 8844453787----67685435-56765734799999999999899-999860885256221057873588775447889
Q ss_pred HHHHHHHHHHHHCCCCEEEE---------ECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC-HHHHHHHH-H--HC
Q ss_conf 99999999765044403664---------056404779999998622365699997389551562-78999988-6--23
Q gi|254780414|r 209 HKEIVSRIKEQVGNERVICA---------VSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE-VENIISLF-K--GY 275 (520)
Q Consensus 209 ~~~~i~~Ir~~vg~~kVi~~---------lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE-~~~v~~~~-~--~~ 275 (520)
+++..++|=+.++++.=++- -.-=|====.|.++.+++|+|- -|.||+|=--.+- .|.|+..| . +.
T Consensus 156 L~EsL~~vY~~l~~dmRlLiEYKFFEPAfY~TD~pDWGtAY~~~~kLG~rA-~VlVD~GHHa~GTNIE~IVA~LL~e~KL 234 (382)
T TIGR02635 156 LEESLAEVYEHLGDDMRLLIEYKFFEPAFYHTDIPDWGTAYALSKKLGDRA-LVLVDTGHHAQGTNIEFIVATLLDEKKL 234 (382)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 988899998516988778532204575344578333579999998548923-8986257798777489999988726765
Q ss_pred CCCCEEEEEHHHHHHHHHCCCCCHH
Q ss_conf 6985799758899999966898889
Q gi|254780414|r 276 PNFPLRVVDASERFIRKLKNIVDPE 300 (520)
Q Consensus 276 ~~~~l~~vda~~~Fl~~L~gv~DPE 300 (520)
.|..+...-..+- +-.-|-.||=
T Consensus 235 GGFhfNsrkYADD--DL~~Ga~nPy 257 (382)
T TIGR02635 235 GGFHFNSRKYADD--DLIVGAINPY 257 (382)
T ss_pred CCCCCCCCCCCCH--HHHHHHCCHH
T ss_conf 6633455444435--7887501757
No 301
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=43.25 E-value=24 Score=15.60 Aligned_cols=69 Identities=19% Similarity=0.285 Sum_probs=38.6
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH-HHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 9765044403664056404779999998622365699997389551562789999-88623698579975889999996
Q gi|254780414|r 216 IKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIIS-LFKGYPNFPLRVVDASERFIRKL 293 (520)
Q Consensus 216 Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~-~~~~~~~~~l~~vda~~~Fl~~L 293 (520)
+++.+.+.|||.|++ -+|+-.|.-+.+.+=+. .|+.-| -|--|...+++ .|+ +.|+-.+|.=..-.+++
T Consensus 170 ~~el~~~~kVIgG~t--p~~~e~a~~lY~~iv~~-~~~vts---~~tAEm~Kl~EN~fR---dVNIALaNElali~~~~ 239 (436)
T COG0677 170 LKELVNNPKVIGGVT--PKCAELAAALYKTIVEG-VIPVTS---ARTAEMVKLTENTFR---DVNIALANELALICNAM 239 (436)
T ss_pred HHHHHCCCCEEECCC--HHHHHHHHHHHHHHEEE-EEECCC---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 020201782353688--89999999999986177-997577---479999998863346---77899999999999982
No 302
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=43.02 E-value=24 Score=15.57 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=5.6
Q ss_pred CEEEECCCCC
Q ss_conf 7999985388
Q gi|254780414|r 52 QAIILSGSPA 61 (520)
Q Consensus 52 ~GIILSGGP~ 61 (520)
|.=|+.||-.
T Consensus 46 KaQV~aGGRG 55 (387)
T COG0045 46 KAQVHAGGRG 55 (387)
T ss_pred EEEEEECCCC
T ss_conf 9225305766
No 303
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=42.54 E-value=24 Score=15.52 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCH
Q ss_conf 789999999976504-44036640564047799999986223-656999973895515627
Q gi|254780414|r 207 SYHKEIVSRIKEQVG-NERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEV 265 (520)
Q Consensus 207 ~~~~~~i~~Ir~~vg-~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~ 265 (520)
+|+++ +.+++. |..+++--..|+-|..||.+|.++ | ++ +..|..||.=-++.
T Consensus 52 ~f~~~----l~~~~~~d~~ivv~C~sG~RS~~Aa~~L~~~-Gf~n--V~ni~gGfeG~~~~ 105 (117)
T cd01522 52 NFLAE----LEEKVGKDRPVLLLCRSGNRSIAAAEAAAQA-GFTN--VYNVLEGFEGDLDA 105 (117)
T ss_pred HHHHH----HHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCC--EEEECCCCCCCCCC
T ss_conf 27899----9974599986999889981599999999985-9877--79818980358876
No 304
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=42.39 E-value=24 Score=15.51 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 705788998888659406985289898-------899723997999985388999999975376898089988997
Q gi|254780414|r 17 SQFTQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 17 SQytqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
+|..+-|-+..++.|....+...+.+. +.+...+++|||+.+.- ..+.....+-+.++|+.-+
T Consensus 15 ~~~~~~ie~~~~~~Gy~~~i~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~------~~~~~~~~l~~~~iP~V~~ 84 (268)
T cd06273 15 ARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLD------HSPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC------CCHHHHHHHHHCCCCEEEE
T ss_conf 999999999999859999999589998999999999996599999991899------9989999999759989998
No 305
>pfam02142 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site.
Probab=41.30 E-value=25 Score=15.40 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=33.6
Q ss_pred HHHHHHCCCEEEEECCCC---------CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 988886594069852898---------988997239979999853889999999753768980899889
Q gi|254780414|r 24 ARRVRESKVYCEVIAFKN---------ALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 24 aRriRelgVyseI~P~~~---------~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
++.+++.|+-|+++-... ..+.+...+.+-||-...|.+-...+...+...+.+.+||.+
T Consensus 23 a~~L~~~Gi~~~~v~k~~~~~~~~~~~i~d~i~~~~IdlVInt~~~~~~~~~dg~~iRr~a~~~~Ip~~ 91 (92)
T pfam02142 23 AKFLKEAGIPTEVVNKTGEGRPGGRVQIGDLIKNGEIDLVINTLYPFKATVHDGYAIRRAAENIDIPLP 91 (92)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCEECCCCHHHHHHHHHCCCCCC
T ss_conf 999995599816863406899998476999998299519998389885112588789999992699854
No 306
>TIGR02613 mob_myst_B mobile mystery protein B; InterPro: IPR013436 Proteins in this entry, designated mobile mystery protein B, are more often encoded within mobilisation-related contexts than not. This includes a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and plasmids in Agrobacterium tumefaciens and Coxiella burnetii. They are always found together with mobile mystery protein A (IPR013435 from INTERPRO), a helix-turn-helix putative DNA binding protein. This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family, where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context, often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules..
Probab=40.97 E-value=8.8 Score=18.66 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=14.5
Q ss_pred CCHHHHCCCCCC-CCCCEEEEC
Q ss_conf 998894268889-831112210
Q gi|254780414|r 388 LPDSFVERHPCP-GPGLAIRCI 408 (520)
Q Consensus 388 lp~~~~~RhPFP-GPGLaiRi~ 408 (520)
+.+-||.=|||| |=|=-.|++
T Consensus 115 fHHRLV~iHPFaNGNGRHAR~~ 136 (189)
T TIGR02613 115 FHHRLVAIHPFANGNGRHARLA 136 (189)
T ss_pred HHCCEEEECCCCCCCHHHHHHH
T ss_conf 4100023347978864689999
No 307
>pfam01513 NAD_kinase ATP-NAD kinase. Members of this family include ATP-NAD kinases EC:2.7.1.23, which catalyses the phosphorylation of NAD to NADP utilising ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus. Also includes NADH kinases EC:2.7.1.86.
Probab=40.66 E-value=18 Score=16.52 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=26.3
Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHH
Q ss_conf 97239979999853889999999753768980899889977899
Q gi|254780414|r 46 FKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQ 89 (520)
Q Consensus 46 i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~ 89 (520)
+.+.+++-||.=||-. -..+......+.++|+|||-+|.
T Consensus 31 ~~~~~~Dlii~lGGDG-----T~L~~~~~~~~~~~PilGin~G~ 69 (243)
T pfam01513 31 MVEEGVDLIVVLGGDG-----TALDAARLLGDHDIPILGINTGT 69 (243)
T ss_pred HHCCCCCEEEEECCCH-----HHHHHHHHHCCCCCCEEEEECCC
T ss_conf 3055988999989878-----99999998456799589985697
No 308
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.63 E-value=26 Score=15.32 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=28.4
Q ss_pred CCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEEC
Q ss_conf 898988997239979999853889999999753768980899889977
Q gi|254780414|r 39 FKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGIC 86 (520)
Q Consensus 39 ~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGIC 86 (520)
.+.+.|.+..++|+-||.+++.. .......+-++++|++-+.
T Consensus 58 ~~pn~E~ilaL~PDlVi~~~~~~------~~~~~~~L~~~gI~v~~~~ 99 (186)
T cd01141 58 GSLNVELIVALKPDLVILYGGFQ------AQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCCHHHHHHHCCCEEEEECCCC------CHHHHHHHHHCCCCEEEEE
T ss_conf 89899999970999999958878------6789999996499579960
No 309
>KOG0912 consensus
Probab=40.60 E-value=26 Score=15.32 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=80.4
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCC--H
Q ss_conf 9987550106441114067899999999765044403664056404779999998622-365699997389551562--7
Q gi|254780414|r 189 IDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAI-GINLTCVLVDHGFMRKNE--V 265 (520)
Q Consensus 189 L~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAi-g~~l~~vfVD~GllRknE--~ 265 (520)
|-||.-+-|..++ .+...-+++-+.++++--+.||+.| -||+---+.|..|-- .+-=|-=.+-||.|-+.| .
T Consensus 17 fv~FyAdWCrFSq--~L~piF~EAa~~~~~e~P~~kvvwg---~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg 91 (375)
T KOG0912 17 FVNFYADWCRFSQ--MLKPIFEEAAAKFKQEFPEGKVVWG---KVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRG 91 (375)
T ss_pred EEEEEHHHCHHHH--HHHHHHHHHHHHHHHHCCCCCEEEE---ECCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHCC
T ss_conf 6663301135888--8768899999999986888645998---7055315677654100348614665543013134313
Q ss_pred ----HHHHHHHHHCCCCCEEEEEHHHHH--HHHHCCCCCHHHHHHHHHHHH------HHHHHHHHHHCC-CCEEE
Q ss_conf ----899998862369857997588999--999668988899998875658------999999997439-97099
Q gi|254780414|r 266 ----ENIISLFKGYPNFPLRVVDASERF--IRKLKNIVDPETKRKVIGQLF------IEVFEEEAKKIG-GAQFL 327 (520)
Q Consensus 266 ----~~v~~~~~~~~~~~l~~vda~~~F--l~~L~gv~DPE~KRkiIG~~F------i~vf~~~a~~~~-~~~~L 327 (520)
+...+..++.+. |+=+.| ++.|.+..+|+ ||-+||--= .+.|.+.|.-+. +..|+
T Consensus 92 ~RsVeaL~efi~kq~s------~~i~Ef~sl~~l~n~~~p~-K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~ 159 (375)
T KOG0912 92 QRSVEALIEFIEKQLS------DPINEFESLDQLQNLDIPS-KRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFL 159 (375)
T ss_pred CHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 2139999999999743------6888877389988520645-564999844679936899999999876321799
No 310
>TIGR01264 tyr_amTase_E tyrosine aminotransferase; InterPro: IPR005957 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate.; GO: 0004838 tyrosine transaminase activity, 0030170 pyridoxal phosphate binding, 0009072 aromatic amino acid family metabolic process.
Probab=40.57 E-value=9.5 Score=18.43 Aligned_cols=92 Identities=23% Similarity=0.373 Sum_probs=42.2
Q ss_pred CCEEEEEECC------CCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6569999738------9551562789999886236985799758899999966898889999887565899999999743
Q gi|254780414|r 248 INLTCVLVDH------GFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKI 321 (520)
Q Consensus 248 ~~l~~vfVD~------GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~ 321 (520)
|+-.|+.|+| +--++.-.+++..+-.+ ..+.+. -| |. +.- =||. -|.
T Consensus 176 d~T~~l~vnNPSNPcGSvF~~~Hl~~l~a~A~~-~~Lpi~-AD--EI-Y~~-------------------~VF~---GkD 228 (415)
T TIGR01264 176 DKTKALIVNNPSNPCGSVFRREHLEELLALAER-LKLPII-AD--EI-YGD-------------------MVFK---GKD 228 (415)
T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH-CCCCEE-EE--EE-CCC-------------------CCCC---CCC
T ss_conf 674078883757788988787889999999875-387236-64--20-256-------------------5138---867
Q ss_pred CCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHH-----CCC--HHHHHHHHHHHHHHH
Q ss_conf 997099864622024542024677763034430232011320-----320--223789873899999
Q gi|254780414|r 322 GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHM-----DMK--LVEPLKELFKDEVRL 381 (520)
Q Consensus 322 ~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~-----~~~--liEPl~~l~KdEVR~ 381 (520)
++++|.+--+|-|.|== = --||+-+++ .+. |+.-=++.+.||+|.
T Consensus 229 PnatF~~lA~L~s~VP~------------~---~cgG~AKr~lVPGWRLGWli~hd~~~~~~~e~~~ 280 (415)
T TIGR01264 229 PNATFTPLASLSSKVPI------------L---SCGGLAKRWLVPGWRLGWLIIHDRKGVLRDEVKD 280 (415)
T ss_pred CCCCEEEECCCCCCCCE------------E---EECCCCCCCCCCCCCCCCEEEECCCCCCCHHHHH
T ss_conf 86422020237799886------------8---7076320022476110247888788865026889
No 311
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=40.36 E-value=16 Score=16.75 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=22.0
Q ss_pred HHHCCCCEEE---ECHHHHHHHHHCCCEEEECCCC--CCCEEE-EEECC
Q ss_conf 9808998899---7789999899709699986986--610366-75238
Q gi|254780414|r 75 ILESNIPLLG---ICYGQQIMCQSLGGKTKNSQSR--EFGRAF-IEIKK 117 (520)
Q Consensus 75 I~~~~iPILG---ICyG~QlLa~~~GG~V~~~~~~--EyG~~~-I~i~~ 117 (520)
|++-|.|+=- |==-|+--|+..|=++..+.++ |-|+.+ |.|++
T Consensus 99 IlEEGfp~e~L~~iv~Sm~~~A~~aGV~iV~GDTKVV~kG~~D~iFINT 147 (345)
T TIGR02124 99 ILEEGFPIEDLERIVKSMAEAARKAGVKIVAGDTKVVEKGKVDGIFINT 147 (345)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEEEEE
T ss_conf 1340787678999999999999973976897573533457756058813
No 312
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=40.34 E-value=26 Score=15.29 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=46.4
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCH---HHH-----------------HHCCCCEEEECCCCC
Q ss_conf 863448869999889705788998888659406985289898---899-----------------723997999985388
Q gi|254780414|r 2 HKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNAL---DYF-----------------KEQNPQAIILSGSPA 61 (520)
Q Consensus 2 ~~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~---e~i-----------------~~~~p~GIILSGGP~ 61 (520)
.....+.+|+|+-.|- -..-.+|.+++.|....+..-+... +.. ...+++-||+|.|=.
T Consensus 2 ~~~~~~~kv~V~GLG~-sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 2 MEDFQGKKVLVLGLGK-SGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCCCCCCEEEEEECCC-CCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCC
T ss_conf 5100599799992665-109999999977986999838987653234444203722313764110013477899899999
Q ss_pred CCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHC
Q ss_conf 99999997537689808998899778999989970
Q gi|254780414|r 62 SSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSL 96 (520)
Q Consensus 62 SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~ 96 (520)
.+.|.+. +....++||+|- .++-....
T Consensus 81 ----~~~p~v~-~A~~~gi~i~~d---ieL~~r~~ 107 (448)
T COG0771 81 ----PTHPLVE-AAKAAGIEIIGD---IELFYRLS 107 (448)
T ss_pred ----CCCHHHH-HHHHCCCCEEEH---HHHHHHHC
T ss_conf ----9888999-999869937748---88898744
No 313
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=40.33 E-value=15 Score=17.11 Aligned_cols=102 Identities=15% Similarity=0.290 Sum_probs=53.2
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCHHHHH
Q ss_conf 87550106441114067899999999765044403664056404779999998622365699997389551-56278999
Q gi|254780414|r 191 NFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR-KNEVENII 269 (520)
Q Consensus 191 NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllR-knE~~~v~ 269 (520)
.++++++.....|+...|.++..+.|++....+++-..+ ||---=+ +|+= +|+-. .....++.
T Consensus 61 Hhli~~~~~~e~~sv~~f~~~a~~~i~~i~~~~kiPIiV-GGTglYl------~aLl---------~g~~~~p~~~~~ir 124 (304)
T PRK00091 61 HHLIDILDPTESYSAADFQRDALAAIEDITARGKLPILV-GGTGLYF------KALL---------EGLSFLPPADPEVR 124 (304)
T ss_pred CEEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEE-CCCHHHH------HHHH---------CCCCCCCCCCHHHH
T ss_conf 124345658875449999999999999999769987898-0838999------9997---------18777888898999
Q ss_pred HHHHHCCCCCEEEEEHHHHHHHHHCCCCCHH--------HHHHHHHHHHHHHHHH
Q ss_conf 9886236985799758899999966898889--------9998875658999999
Q gi|254780414|r 270 SLFKGYPNFPLRVVDASERFIRKLKNIVDPE--------TKRKVIGQLFIEVFEE 316 (520)
Q Consensus 270 ~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE--------~KRkiIG~~Fi~vf~~ 316 (520)
+.+...... ...+.+++.|+-+ ||+ .+|+++-. ++|+..
T Consensus 125 ~~l~~~~~~-----~g~~~l~~~L~~~-Dp~~a~~I~~nd~~Rl~RA--lEv~~~ 171 (304)
T PRK00091 125 AELEALAAE-----EGWEALHAELAEI-DPVAAARIHPNDPQRIIRA--LEVYEL 171 (304)
T ss_pred HHHHHHHHH-----HCHHHHHHHHHHH-CHHHHHHCCCCCHHHHHHH--HHHHHH
T ss_conf 999999997-----5899999999875-9999961598612679999--999999
No 314
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=40.19 E-value=26 Score=15.28 Aligned_cols=71 Identities=18% Similarity=0.424 Sum_probs=45.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH----HCCCEEEE--ECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 48869999889705788998888----65940698--5289898899723997999985388999999975376898089
Q gi|254780414|r 6 RSSKVLIIDFGSQFTQLIARRVR----ESKVYCEV--IAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESN 79 (520)
Q Consensus 6 ~~~~IlIlDfGSQytqLIaRriR----elgVyseI--~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~ 79 (520)
....||+|=-|+--|-|++.+++ |-|+-..| +|++..-+.++. .+=||| ||+.-|. .+.+.+.-=.+|
T Consensus 45 n~~~iLl~CaaGmstsLLv~~l~k~A~~~~~~~~i~A~~~~~~~e~~~~--~d~VlL--aPQ~~~~--~~~lk~~t~~~G 118 (142)
T TIGR00853 45 NETNILLLCAAGMSTSLLVNKLNKAAKEYGVPVKIAAVSYGAAMEILDD--ADVVLL--APQVAYM--LPDLKKETDKKG 118 (142)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH--HCEEEE--HHHHHHH--HHHHHHHCCCCC
T ss_conf 3211688876973547899999999984599758884057634433535--043112--0326755--799998513589
Q ss_pred CCE
Q ss_conf 988
Q gi|254780414|r 80 IPL 82 (520)
Q Consensus 80 iPI 82 (520)
|||
T Consensus 119 ip~ 121 (142)
T TIGR00853 119 IPV 121 (142)
T ss_pred CCE
T ss_conf 753
No 315
>PRK05569 flavodoxin; Provisional
Probab=40.06 E-value=26 Score=15.27 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=32.9
Q ss_pred CEEEEEECCCCH--HHHHHH----HHHHCCCEEEEECC-CCCHHHHHHCCCCEEEECCCCC
Q ss_conf 869999889705--788998----88865940698528-9898899723997999985388
Q gi|254780414|r 8 SKVLIIDFGSQF--TQLIAR----RVRESKVYCEVIAF-KNALDYFKEQNPQAIILSGSPA 61 (520)
Q Consensus 8 ~~IlIlDfGSQy--tqLIaR----riRelgVyseI~P~-~~~~e~i~~~~p~GIILSGGP~ 61 (520)
.||+|+ |+|+| |+.+|+ -+++.|+-.+++.. +.+.+++. +.++|+| |+|.
T Consensus 2 ~Kv~Iv-Y~S~~GnTe~mA~~IaeG~~~~G~ev~v~~~~~~~~~di~--~~d~i~~-GspT 58 (141)
T PRK05569 2 KKVSII-YWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVL--EADAVAF-GSPS 58 (141)
T ss_pred CEEEEE-EECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH--HCCEEEE-ECCC
T ss_conf 749999-9899608999999999999976981999984239988997--1890599-0545
No 316
>pfam01949 DUF99 Protein of unknown function DUF99. The function of this archaebacterial protein family is unknown.
Probab=39.93 E-value=26 Score=15.25 Aligned_cols=74 Identities=22% Similarity=0.257 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH----HHHHHHHCC-CCCHHHHHH
Q ss_conf 64047799999986223-656999973895515627899998862369857997588----999999668-988899998
Q gi|254780414|r 231 GGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDAS----ERFIRKLKN-IVDPETKRK 304 (520)
Q Consensus 231 GGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~----~~Fl~~L~g-v~DPE~KRk 304 (520)
+|-|+|=+.+=+-+... +++.+||.|-=-.----.-.+..++++ +++++++|-.+ +..-++|+- ..|+|++.+
T Consensus 44 dG~DaT~~i~~mv~~~~~~~i~~V~L~Git~aGFNvvD~~~l~~~-tg~PVI~V~~~~p~~~~ie~AL~khf~d~~~R~~ 122 (185)
T pfam01949 44 DGDDATDAIIDLVKGKFRPDIRVILLDGITFGGFNIIDIEELYEE-TGLPVIVVMRKEPDLEGIESALRKHFPDDEERLK 122 (185)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEECCEEEEEEEEECHHHHHHH-HCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 795279999999984355662299987762531488459999998-7998899997379868999999987899899999
Q ss_pred H
Q ss_conf 8
Q gi|254780414|r 305 V 305 (520)
Q Consensus 305 i 305 (520)
+
T Consensus 123 ~ 123 (185)
T pfam01949 123 I 123 (185)
T ss_pred H
T ss_conf 9
No 317
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=39.71 E-value=27 Score=15.23 Aligned_cols=66 Identities=27% Similarity=0.417 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC------HHHHHHHHHH
Q ss_conf 067899999999765044403664056404779999998622365699997389551562------7899998862
Q gi|254780414|r 205 MSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE------VENIISLFKG 274 (520)
Q Consensus 205 ~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE------~~~v~~~~~~ 274 (520)
+..--.++|+++-..++++-+|.+ +|||||.-.|.===+| |--|.=+| +||-=+++ .+++...+++
T Consensus 284 L~~kS~eiirrL~~~~~gr~piIg-VGGI~~~~~A~EkI~A-GASLlQ~Y--sgfIy~GP~l~k~i~~~i~~lL~~ 355 (370)
T TIGR01036 284 LQKKSTEIIRRLYKELKGRLPIIG-VGGISSAQNALEKIKA-GASLLQIY--SGFIYKGPPLVKEIVKEIEKLLKE 355 (370)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHH-CCHHHHHH--HCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 447789999999999649578996-2785747889999984-71244564--234667716799999999999751
No 318
>pfam04031 Las1 Las1-like. Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth.
Probab=39.63 E-value=18 Score=16.44 Aligned_cols=58 Identities=28% Similarity=0.461 Sum_probs=41.3
Q ss_pred CHHHHHH-HHHHHHHHHHHHHHCCCHHHHC-CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0223789-8738999999998199988942-688898311122100036789999999999999999864
Q gi|254780414|r 366 KLVEPLK-ELFKDEVRLLGKELRLPDSFVE-RHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKA 433 (520)
Q Consensus 366 ~liEPl~-~l~KdEVR~lg~~Lglp~~~~~-RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l~~~ 433 (520)
.+++|.. --|+.-+..+++++|||+.+|+ ||--- =|+ --.+++||.|-....+-|++.
T Consensus 85 gl~d~~Q~~~~a~s~~~~A~~iglP~~lVdlRH~~t--------H~~--LPsl~~LR~aa~~aL~WL~~~ 144 (149)
T pfam04031 85 GLLDPTQQGQYAIPMRKLAKEIGLPEWFVELRHEAT--------HEE--LPSLEVLRQAAKLALDWLWDN 144 (149)
T ss_pred HCCCHHHCCCHHCCHHHHHHHCCCCHHHHHHHHHHH--------HCC--CCCHHHHHHHHHHHHHHHHHH
T ss_conf 414187554111359999988399699999997875--------245--998899999999999999986
No 319
>pfam01633 Choline_kinase Choline/ethanolamine kinase. Choline kinase catalyses the committed step in the synthesis of phosphatidylcholine by the CDP-choline pathway. This alignment covers the protein kinase portion of the protein. The divergence of this family makes it very difficult to create a model that specifically predicts choline/ethanolamine kinases only. However if Choline_kinase_C is also present then it is definitely a member of this family.
Probab=39.52 E-value=27 Score=15.21 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=5.0
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 699998897057889
Q gi|254780414|r 9 KVLIIDFGSQFTQLI 23 (520)
Q Consensus 9 ~IlIlDfGSQytqLI 23 (520)
++++==||-..-++|
T Consensus 4 ~vl~Ri~G~~te~~I 18 (208)
T pfam01633 4 KVLVRIYGAGTELFI 18 (208)
T ss_pred EEEEECCCCCCCCEE
T ss_conf 899985889857507
No 320
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=39.47 E-value=27 Score=15.20 Aligned_cols=132 Identities=22% Similarity=0.428 Sum_probs=77.7
Q ss_pred EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----------HHHHHCCCC---EEEEE----CCCCCHHHHHHCC
Q ss_conf 99758899999966898889999887565899999-----------999743997---09986----4622024542024
Q gi|254780414|r 281 RVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFE-----------EEAKKIGGA---QFLGQ----GTLYPDVIESISF 342 (520)
Q Consensus 281 ~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~-----------~~a~~~~~~---~~L~Q----GTlypDvIES~~~ 342 (520)
..+++.+.-|++-..-+|++. .++- -.|++.++- +..+. --.|||=|=--
T Consensus 321 ~L~~lAd~il~~Wr~YSDe~~----------~I~a~T~dtpHnTITPIARkR~~~yELDlVLRnNrT~e~yPdGIFHP-- 388 (503)
T COG4468 321 ELIKLADKILKKWREYSDEEV----------QILAYTGDTPHNTITPIARKRGGLYELDLVLRNNRTSEEYPDGIFHP-- 388 (503)
T ss_pred HHHHHHHHHHHHHHHHCCHHC----------CEEECCCCCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCC--
T ss_conf 899999999999987254200----------30001589887655625440488057888973587643378766687--
Q ss_pred CCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC-----------------HHHHCCCCCCCCCCEE
Q ss_conf 67776303443023201132032022378987389999999981999-----------------8894268889831112
Q gi|254780414|r 343 FGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLP-----------------DSFVERHPCPGPGLAI 405 (520)
Q Consensus 343 ~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~lg~~Lglp-----------------~~~~~RhPFPGPGLai 405 (520)
-.--+.||- -|. ||.+.|++.++-| | .|.|++++++.|-=. ..+..+||+
T Consensus 389 -H~evhhIKK-ENI-GLIEVMGLAiLP~-R--LK~El~~va~yL~~~~~~~~~~~~~~kH~~Wa~~~ke~~~~------- 455 (503)
T COG4468 389 -HQEVHHIKK-ENI-GLIEVMGLAILPG-R--LKEELEEVAEYLLGEKKKINEDSDTAKHLEWAKALKEKYPN------- 455 (503)
T ss_pred -CHHHHHHHH-HCC-CHHEEECHHHCCH-H--HHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHCCC-------
T ss_conf -677633544-135-4311110320773-5--47999999999850222220020377789999999974677-------
Q ss_pred EECCCCCHHHHH-HHH-HHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 210003678999-999-9999999999864653332201
Q gi|254780414|r 406 RCIGEITEERIN-ILR-ESDAIYREEIHKAGIYRKIWQA 442 (520)
Q Consensus 406 Ri~g~vt~e~~~-i~r-~ad~i~~~~l~~~~ly~~~~q~ 442 (520)
+++|.++ |++ ++-.+|...|+.+|.|....+-
T Consensus 456 -----i~~E~v~~ivk~evG~vFarVLedAGVfK~t~~G 489 (503)
T COG4468 456 -----IKKENVDEIVKEEVGEVFARVLEDAGVFKRTESG 489 (503)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf -----4188899999999989999999754710258146
No 321
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=39.44 E-value=27 Score=15.20 Aligned_cols=56 Identities=25% Similarity=0.450 Sum_probs=38.0
Q ss_pred CEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCC-CC-----CCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 011246521222152025779987550106441-11-----406789999999976504440366405
Q gi|254780414|r 169 KYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQD-NW-----VMSSYHKEIVSRIKEQVGNERVICAVS 230 (520)
Q Consensus 169 ~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~-~W-----~~~~~~~~~i~~Ir~~vg~~kVi~~lS 230 (520)
-+=|||-|- -+|- +|..||....+-.. .| +=-.|..+.++.||+.||.+.|-+=+|
T Consensus 165 GfDgVEiHa-----aHGy-Ll~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i~vRlS 226 (338)
T cd02933 165 GFDGVEIHG-----ANGY-LIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLS 226 (338)
T ss_pred CCCEEEEEC-----CCHH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 999999822-----4406-8998538532689897899989998999999999999729870899965
No 322
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=39.43 E-value=24 Score=15.51 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHCCCHHHHC---CCCCCC
Q ss_conf 8738999999998199988942---688898
Q gi|254780414|r 373 ELFKDEVRLLGKELRLPDSFVE---RHPCPG 400 (520)
Q Consensus 373 ~l~KdEVR~lg~~Lglp~~~~~---RhPFPG 400 (520)
.+--||+|++|..|||+++.+- --|.-|
T Consensus 47 ~~~~~ear~v~e~L~L~~~~v~~L~~~p~rg 77 (151)
T COG1513 47 ALPADEARAVGEALDLDEDAILLLQMIPLRG 77 (151)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf 2899999999998199878899842167567
No 323
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.27 E-value=27 Score=15.18 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=44.2
Q ss_pred EECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 9889705788998888659406985289898899723997999985388999999975376898089988997
Q gi|254780414|r 13 IDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 13 lDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
++|=++...-+...-++.|..-.+.+.+...+.+.....+|+||..-. .+.|.+ ..+.+.++|+.=|
T Consensus 19 ~~FF~e~~~~ve~~A~~~gy~liL~~~~~~~~~l~~~~VDGvIl~~~~-----~~d~~i-~~L~~~~iP~V~i 85 (269)
T cd06287 19 LGFMMEVAAAAAESALERGLALCLVPPHEADSPLDALDIDGAILVEPM-----ADDPQV-ARLRQRGIPVVSI 85 (269)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEEECCC-----CCCHHH-HHHHHCCCCEEEE
T ss_conf 642999999999999986998999479986556875879989990378-----897799-9999769999998
No 324
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.91 E-value=27 Score=15.14 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=38.4
Q ss_pred ECCCCHHHH----HHHHHHHCCCEEEEEC--CCCCHH-------HHHHCCCCEEEECCCCCCCCCCCC-CCCCHHHHHCC
Q ss_conf 889705788----9988886594069852--898988-------997239979999853889999999-75376898089
Q gi|254780414|r 14 DFGSQFTQL----IARRVRESKVYCEVIA--FKNALD-------YFKEQNPQAIILSGSPASSLDIDS-PQIPKEILESN 79 (520)
Q Consensus 14 DfGSQytqL----IaRriRelgVyseI~P--~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~a-p~~~~~I~~~~ 79 (520)
+..+.|-.. +.+.-+++|+...++. .+.+.+ .+...+++|||++.. +.++ ...-++..+.+
T Consensus 8 ~~~npf~~~v~~G~e~aA~~~G~~v~~~~~~~~~d~~~q~~~i~~~i~~~vDgIii~p~-----~~~~~~~~l~~a~~~g 82 (273)
T cd06310 8 GTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT-----DAKALVPPLKEAKDAG 82 (273)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC-----CCHHHHHHHHHHHHCC
T ss_conf 99985999999999999998099899972899789999999999999749999999168-----7144799999999849
Q ss_pred CCEEEE
Q ss_conf 988997
Q gi|254780414|r 80 IPLLGI 85 (520)
Q Consensus 80 iPILGI 85 (520)
||+.-+
T Consensus 83 IPvV~~ 88 (273)
T cd06310 83 IPVVLI 88 (273)
T ss_pred CCEEEE
T ss_conf 985898
No 325
>pfam04362 Iron_traffic Bacterial Fe(2+) trafficking. This is a family of bacterial Fe(2+) trafficking proteins.
Probab=38.84 E-value=16 Score=16.78 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=27.2
Q ss_pred CCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99988942688898311122100036789999999999999999
Q gi|254780414|r 387 RLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEI 430 (520)
Q Consensus 387 glp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i~~~~l 430 (520)
+-.-+=+.+.||||| ||-||..+|.++-=+.=..-...+++|-
T Consensus 10 ~~e~egL~~pP~PG~-lG~~I~~~vSk~AW~~W~~~QTmLINE~ 52 (87)
T pfam04362 10 GKEAEGLDFPPYPGE-LGKRIYDNVSKEAWQEWLKHQTMLINEK 52 (87)
T ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 684778999999968-8899999988999999999758774112
No 326
>pfam00365 PFK Phosphofructokinase.
Probab=38.74 E-value=8.1 Score=18.93 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=27.1
Q ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHH
Q ss_conf 799998538899999997537689808998899778999989
Q gi|254780414|r 52 QAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMC 93 (520)
Q Consensus 52 ~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa 93 (520)
-||+.||||.++...-.-.+-....+.+.-++|+..|.+=|.
T Consensus 3 I~IltsGG~~pG~Na~i~~vv~~a~~~g~~v~G~~~G~~GL~ 44 (279)
T pfam00365 3 IGVLTSGGDAPGMNAAIRAVVRSAIAEGLEVYGIYEGYAGLV 44 (279)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 999907888667899999999999877999999905677882
No 327
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.40 E-value=28 Score=15.09 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=45.4
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----------------CCCCEEEECCCCCCCCCCC
Q ss_conf 344886999988970578899888865940698528989889972----------------3997999985388999999
Q gi|254780414|r 4 RERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKE----------------QNPQAIILSGSPASSLDID 67 (520)
Q Consensus 4 ~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~----------------~~p~GIILSGGP~SV~d~~ 67 (520)
+-+..+|+|+=+| .-..-.||-+++.|....+.. ...+.... .+.+.||+|.|=. .+
T Consensus 6 ~~~gk~v~v~GlG-~sG~s~a~~L~~~G~~V~~~D--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp----~~ 78 (457)
T PRK01390 6 SFKGKTVALFGLG-GSGLATARALKAGGAEVIAWD--DNPDSVAKAAAAGIATADLRTADWSQFAALVLSPGVP----LT 78 (457)
T ss_pred CCCCCEEEEEEEC-HHHHHHHHHHHHCCCEEEEEE--CCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCC----CC
T ss_conf 0289989999436-999999999997899799993--9920668998759831455412320387899999888----65
Q ss_pred CCC---CCHHHHHCCCCEEEE
Q ss_conf 975---376898089988997
Q gi|254780414|r 68 SPQ---IPKEILESNIPLLGI 85 (520)
Q Consensus 68 ap~---~~~~I~~~~iPILGI 85 (520)
.|. +-....+.++||++=
T Consensus 79 ~p~~~~~v~~a~~~gi~v~se 99 (457)
T PRK01390 79 HPKPHWTVDLARAAGVEVIGD 99 (457)
T ss_pred CCCCHHHHHHHHHCCCEEEEH
T ss_conf 667319999999859918600
No 328
>PRK05568 flavodoxin; Provisional
Probab=38.21 E-value=28 Score=15.07 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=32.2
Q ss_pred CEEEEEECCCC--HHHHH----HHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCCCC
Q ss_conf 86999988970--57889----98888659406985289-898899723997999985388
Q gi|254780414|r 8 SKVLIIDFGSQ--FTQLI----ARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGSPA 61 (520)
Q Consensus 8 ~~IlIlDfGSQ--ytqLI----aRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGGP~ 61 (520)
.||+|+ |.|. .|..+ +.-+++.|+-.+++... .+.+++. +.++|+| |+|.
T Consensus 2 ~kv~Iv-Y~S~~GnTe~mA~~Iaegl~~~Gv~V~~~~~~~~~~~di~--~~d~i~~-GspT 58 (142)
T PRK05568 2 KKLNII-YWSGTGNTEAMANLIAEGAKENGLEVKLLNVSEASVDDVE--NADVVAL-GSPA 58 (142)
T ss_pred CEEEEE-EECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH--HCCEEEE-ECCC
T ss_conf 729999-9899854999999999999866983999980049988997--3996899-4776
No 329
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=38.17 E-value=27 Score=15.22 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=37.2
Q ss_pred EEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 52122215202577998755010644111406789999999976504
Q gi|254780414|r 175 FHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVG 221 (520)
Q Consensus 175 FHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg 221 (520)
|-+| .|-.+|.+||-.|+..|-.--|+|+.+-.+.--|..-..-+|
T Consensus 90 w~Se-eHi~Q~t~IL~~~I~~i~~kfP~Wt~eQ~LkGGiaAYn~G~~ 135 (166)
T cd01021 90 WDSE-EHLSQATEILIDRIKAIQRKFPTWTKEQQLKGGISAYNAGAG 135 (166)
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 7789-999999999999999999708999978887788999842766
No 330
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=38.13 E-value=28 Score=15.06 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHH---HHCCCCEEEECHHHHHHHHH
Q ss_conf 989889972399799998538899999997537689---80899889977899998997
Q gi|254780414|r 40 KNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEI---LESNIPLLGICYGQQIMCQS 95 (520)
Q Consensus 40 ~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I---~~~~iPILGICyG~QlLa~~ 95 (520)
+..++.. ..++-+|+-||+..... ..|.+...+ .+.+..+.++|-|..++|.+
T Consensus 56 ~~~~~~~--~~~D~liV~Gg~~~~~~-~~~~~~~~L~~~~~~g~~v~svctGa~~LA~a 111 (185)
T cd03136 56 DAALEDA--PPLDYLFVVGGLGARRA-VTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCHHHC--CCCCEEEECCCCCCCCC-CCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
T ss_conf 7670016--76789998788880214-79999999999987099899864799999981
No 331
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=37.93 E-value=28 Score=15.04 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH-CCC----C--CHHHHHHHHHHHHH--------HHHHHHHH--HCCC
Q ss_conf 156278999988623698579975889999996-689----8--88999988756589--------99999997--4399
Q gi|254780414|r 261 RKNEVENIISLFKGYPNFPLRVVDASERFIRKL-KNI----V--DPETKRKVIGQLFI--------EVFEEEAK--KIGG 323 (520)
Q Consensus 261 RknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L-~gv----~--DPE~KRkiIG~~Fi--------~vf~~~a~--~~~~ 323 (520)
|.-+++++.++-++ .++++.+=|-=+.=+.-= .|| + .++.=|+|+|..-| +-..+.+. --..
T Consensus 51 ~~~~A~~l~~lc~~-y~~~f~vND~vdlA~~~~ADGvHlGQ~D~p~~~aR~l~G~~~iiG~S~~~~~e~~~a~~C~~~~g 129 (210)
T TIGR00693 51 RLELAEKLRELCRK-YGVPFIVNDRVDLALALGADGVHLGQDDLPVSEARKLLGPDKIIGVSTHNLEELAEAAACELKEG 129 (210)
T ss_pred HHHHHHHHHHHHHH-CCCCEEECCHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99999999999987-08976882839999983798776678889989999853899579853379899999998764078
Q ss_pred CEEEEECCCCC
Q ss_conf 70998646220
Q gi|254780414|r 324 AQFLGQGTLYP 334 (520)
Q Consensus 324 ~~~L~QGTlyp 334 (520)
++|++=|++||
T Consensus 130 aDY~G~Gp~fp 140 (210)
T TIGR00693 130 ADYIGVGPIFP 140 (210)
T ss_pred CCEEEECCCCC
T ss_conf 98888637115
No 332
>pfam04937 DUF659 Protein of unknown function (DUF 659). Transposase-like protein with no known function.
Probab=37.71 E-value=29 Score=15.02 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=41.1
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 215202577998755010644111406789999999976504440366405640477999
Q gi|254780414|r 180 VHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAA 239 (520)
Q Consensus 180 ~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A 239 (520)
.|++.|.. |+ +-..++......+++-+.+.++-+.||.++|+--++-.-.+.+.|
T Consensus 54 V~~~~g~~----FL-kSvD~S~~~~~~~~l~~ll~~vIeEVG~~nVVqVvTdn~~~~~~a 108 (153)
T pfam04937 54 VYCPAGTV----FL-KSVDASDIKKDADYLFELLDSVVEEVGSENVVQVITDNASNYKAA 108 (153)
T ss_pred EECCCCCE----EE-EEEECCCCCCCHHHHHHHHHHHHHHHCCHHEEEEEECCCHHHHHH
T ss_conf 98799868----99-987625664749999999999999947112689994397017999
No 333
>KOG4380 consensus
Probab=37.43 E-value=24 Score=15.55 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=8.4
Q ss_pred HCCCCEEEECHHHHHHHHHCCC
Q ss_conf 0899889977899998997096
Q gi|254780414|r 77 ESNIPLLGICYGQQIMCQSLGG 98 (520)
Q Consensus 77 ~~~iPILGICyG~QlLa~~~GG 98 (520)
+.+.|. -||--.-.|-..+|.
T Consensus 66 ~~~~P~-~~~~R~~AID~~L~~ 86 (244)
T KOG4380 66 DVNCPF-KIQDRQEAIDWLLGL 86 (244)
T ss_pred HCCCCC-CCCCHHHHHHHHHHH
T ss_conf 719996-542489999999999
No 334
>pfam04409 DUF530 Protein of unknown function (DUF530). Family of hypothetical archaeal proteins.
Probab=37.34 E-value=20 Score=16.09 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=3.8
Q ss_pred EEEEEECCCC
Q ss_conf 6999973895
Q gi|254780414|r 250 LTCVLVDHGF 259 (520)
Q Consensus 250 l~~vfVD~Gl 259 (520)
+.-++.+||=
T Consensus 198 i~i~~~EnGr 207 (512)
T pfam04409 198 LEVEYLENGK 207 (512)
T ss_pred EEEEEEECCC
T ss_conf 9999950770
No 335
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=37.13 E-value=29 Score=14.95 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCC-------HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 0578899888865940698528989-------8899723997999985388999999975376898089988997
Q gi|254780414|r 18 QFTQLIARRVRESKVYCEVIAFKNA-------LDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 18 QytqLIaRriRelgVyseI~P~~~~-------~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
+.-.-|.+..++.|....+.+.+.+ ++.+...+++|+|+.+... +.+ ....+.+.++|+.-+
T Consensus 16 ~~~~gi~~~a~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~-----~~~-~~~~~~~~~iPvV~~ 84 (264)
T cd06267 16 ELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRL-----DDE-LLEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHH-HHHHHHHCCCCEEEE
T ss_conf 999999999998699899997899989999999999957999999678889-----989-999999869988999
No 336
>PRK06110 hypothetical protein; Provisional
Probab=37.02 E-value=29 Score=14.95 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=18.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 366405640477999999862236569999738955156278999988623698579
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLR 281 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~ 281 (520)
|+++=||--=-+|++ ..+..|-+.+-+ |-.+=+.+-.+..+. +|-++.
T Consensus 73 vv~aSsGNhg~avA~--aA~~~G~~~~I~------mP~~a~~~K~~~i~~-~GAeVv 120 (321)
T PRK06110 73 VISATRGNHGQSLAF--AARRHGLAATIV------VPHGNSVEKNAAMRA-LGAELI 120 (321)
T ss_pred EEEECCCHHHHHHHH--HHHHHCCCEEEE------CCCCCCHHHHHHHHH-HCCCEE
T ss_conf 899568649999999--999939817997------778885999999998-289628
No 337
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=36.99 E-value=18 Score=16.39 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----CC--CCEEEECCCCC
Q ss_conf 8970578899888865940698528989889972----39--97999985388
Q gi|254780414|r 15 FGSQFTQLIARRVRESKVYCEVIAFKNALDYFKE----QN--PQAIILSGSPA 61 (520)
Q Consensus 15 fGSQytqLIaRriRelgVyseI~P~~~~~e~i~~----~~--p~GIILSGGP~ 61 (520)
=||++.+||.-.||| | +|+|-..|.+.|.+ .. -+..++=|=|-
T Consensus 41 ~GSe~g~lI~~~Ike-G---~IVPs~VTv~LL~kai~~~~W~~~~FLIDGFPR 89 (189)
T TIGR01359 41 EGSENGELIESYIKE-G---KIVPSEVTVELLKKAIKEDGWSSKKFLIDGFPR 89 (189)
T ss_pred CCCCCCCHHHHHHHC-C---CEEHHEEEHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 478885037744115-8---311122324588877763156788236625788
No 338
>TIGR02025 BchH magnesium chelatase, H subunit; InterPro: IPR011771 This entry represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring .; GO: 0016851 magnesium chelatase activity, 0015995 chlorophyll biosynthetic process.
Probab=36.62 E-value=25 Score=15.37 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 970578899888865940698528
Q gi|254780414|r 16 GSQFTQLIARRVRESKVYCEVIAF 39 (520)
Q Consensus 16 GSQytqLIaRriRelgVyseI~P~ 39 (520)
.|=|. +.+|+..-|+-.+=+|-
T Consensus 508 ~SL~~--~L~~LK~~GY~V~~lPe 529 (1384)
T TIGR02025 508 ESLYE--LLKRLKDEGYDVGDLPE 529 (1384)
T ss_pred HHHHH--HHHHHHHCCCCCCCCCC
T ss_conf 89999--99998626887245778
No 339
>pfam11116 DUF2624 Protein of unknown function (DUF2624). This family is conserved in the Bacillaceae family. Several members are named as YqfT. The function is not known.
Probab=36.52 E-value=25 Score=15.44 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 156278999988623698579975889999996689888999988756589
Q gi|254780414|r 261 RKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFI 311 (520)
Q Consensus 261 RknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi 311 (520)
-.+.+++|...++.. .+|+---++.++.++.|.-+|||+.-+. +-++|-
T Consensus 32 T~~QA~~I~~~lrgk-~inifn~~eR~k~lk~la~iTsp~tA~~-vn~Lf~ 80 (84)
T pfam11116 32 TRAQAKQIAKLLRGK-NINIFNESERSKLLKELAKITSPQTAQE-VNELFA 80 (84)
T ss_pred CHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHCCHHHHHH-HHHHHH
T ss_conf 889999999998526-7898998999999999998648989999-999999
No 340
>PRK05723 flavodoxin; Provisional
Probab=36.17 E-value=30 Score=14.85 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=27.2
Q ss_pred EEEEEECCCCHH--HHH----HHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEE
Q ss_conf 699998897057--889----988886594069852898988997239979999
Q gi|254780414|r 9 KVLIIDFGSQFT--QLI----ARRVRESKVYCEVIAFKNALDYFKEQNPQAIIL 56 (520)
Q Consensus 9 ~IlIlDfGSQyt--qLI----aRriRelgVyseI~P~~~~~e~i~~~~p~GIIL 56 (520)
||.|| ||||+. +-+ ++++++.|..+.+.+. .+++.+....++-+++
T Consensus 2 ki~Il-ygS~tGnAe~vA~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~li 53 (151)
T PRK05723 2 KVAIL-SGSVYGTAEEVARHAESLLKAAGFEAWHNPR-ASLQDLLAFAPEALLA 53 (151)
T ss_pred EEEEE-EECCCHHHHHHHHHHHHHHHHCCCCEEECCC-CCHHHHHCCCCCCEEE
T ss_conf 79999-9768348999999999999975995264155-5443564368882899
No 341
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.04 E-value=30 Score=14.84 Aligned_cols=45 Identities=31% Similarity=0.567 Sum_probs=24.3
Q ss_pred HHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCC---CCEEEECHH
Q ss_conf 8659406985289898899723997999985388999999975376898089---988997789
Q gi|254780414|r 28 RESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESN---IPLLGICYG 88 (520)
Q Consensus 28 RelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~---iPILGICyG 88 (520)
|-|++| +-+|+- ...+.+++.+ |+||. .-++++++.| +|.= .||-
T Consensus 28 RvLn~y-e~yPff--~tffteLGf~-VVlS~-----------~S~kely~~G~~ti~se-vCfP 75 (351)
T COG3580 28 RVLNMY-EYYPFF--HTFFTELGFR-VVLSP-----------KSSKELYEKGIETIPSE-VCFP 75 (351)
T ss_pred HHHHHH-HCCHHH--HHHHHHCCCE-EEECC-----------CCCHHHHHHHHHHCCCC-CEEC
T ss_conf 787776-325899--9999974945-99588-----------77589997355527764-2001
No 342
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.96 E-value=30 Score=14.83 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=40.5
Q ss_pred CEEEEEE-CCCC----HHHHHHHHHHHCCCEEEEEC----------C-CCCHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 8699998-8970----57889988886594069852----------8-98988997239979999853889999999753
Q gi|254780414|r 8 SKVLIID-FGSQ----FTQLIARRVRESKVYCEVIA----------F-KNALDYFKEQNPQAIILSGSPASSLDIDSPQI 71 (520)
Q Consensus 8 ~~IlIlD-fGSQ----ytqLIaRriRelgVyseI~P----------~-~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~ 71 (520)
.+|+|+- .++. ..+.+++.+.+.|+..-+-+ + ..+.+++. .+.+-+|--||-.++ .+.
T Consensus 6 k~Vgiv~k~~~~~~~~~~~~l~~~L~~~g~~v~~e~~~a~~~~~~~~~~~~~~~~~-~~~Dlvi~lGGDGTl-----L~~ 79 (291)
T PRK02155 6 RTVALVGRYQTPGIAEPLEALAACIAKRGFEVVFEADTARNTGLTGYPALTPAEIG-ARADVAVVLGGDGTM-----LGI 79 (291)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHC-CCCCEEEEECCCHHH-----HHH
T ss_conf 89999914898689999999999999788999995557776399887747979946-376789997678899-----999
Q ss_pred CHHHHHCCCCEEEECHHH
Q ss_conf 768980899889977899
Q gi|254780414|r 72 PKEILESNIPLLGICYGQ 89 (520)
Q Consensus 72 ~~~I~~~~iPILGICyG~ 89 (520)
.......++|||||-+|.
T Consensus 80 a~~~~~~~~PilGiN~G~ 97 (291)
T PRK02155 80 GRQLAPYGTPLIGINHGR 97 (291)
T ss_pred HHHHHCCCCCEEEEECCC
T ss_conf 998711599689985475
No 343
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=35.68 E-value=31 Score=14.80 Aligned_cols=70 Identities=13% Similarity=0.223 Sum_probs=40.5
Q ss_pred EEEEECCC----CHHHHHHHHHHHCCCEEEEECCCCC-------HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 99998897----0578899888865940698528989-------889972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGS----QFTQLIARRVRESKVYCEVIAFKNA-------LDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGS----QytqLIaRriRelgVyseI~P~~~~-------~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
++|=|+-. +..+-|.+..++.|....+...+.+ ++.+...+++|||+.+.-. + ......+.+.
T Consensus 4 vivpdi~npff~~l~~~ie~~~~~~Gy~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi~~~~~-----~-~~~~~~~~~~ 77 (264)
T cd06274 4 LIIPDLENRSFARIAKRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLP-----P-DDPYYLCQKA 77 (264)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----C-HHHHHHHHHC
T ss_conf 997798787999999999999998699899993899989999999999966998799767889-----8-7999999975
Q ss_pred CCCEEEE
Q ss_conf 9988997
Q gi|254780414|r 79 NIPLLGI 85 (520)
Q Consensus 79 ~iPILGI 85 (520)
++|+.-+
T Consensus 78 ~iPvV~i 84 (264)
T cd06274 78 GLPVVAL 84 (264)
T ss_pred CCCEEEE
T ss_conf 9988998
No 344
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1; InterPro: IPR004403 These proteins are translation factors that have been characterised in eukaryotes as the non-GTP-binding subunit of a cytosolic heterodimer that acts as a translation release factor for all three stop codons. Members of this orthologous family are found in Eukarya and Archaea. The name used should be eRF1 for the Archaea and aRF1 for the Eukarya. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=35.52 E-value=15 Score=17.08 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=12.2
Q ss_pred HCCCHHHHHHHHHHHHHC
Q ss_conf 215202577998755010
Q gi|254780414|r 180 VHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 180 ~hT~~G~~iL~NFl~~Ic 197 (520)
+.|+.|.++++-|= .|+
T Consensus 398 ~eseEG~~l~~aFG-GIg 414 (425)
T TIGR00108 398 TESEEGAQLLKAFG-GIG 414 (425)
T ss_pred CCCHHHHHHHHHCC-CEE
T ss_conf 57647999986244-325
No 345
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=35.35 E-value=31 Score=14.76 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=63.2
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEEEE
Q ss_conf 99888865940698528989889972399799998538899999997537689808998899778999989970969998
Q gi|254780414|r 23 IARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKN 102 (520)
Q Consensus 23 IaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V~~ 102 (520)
..++++++|+-. +.|++ .+.+. +++-||.|. ...++.|.+.. ..+.++|++ .++|+|+...-.+-.=
T Consensus 44 ~t~~L~~~G~~i-~~gh~--~~ni~--~~~~VV~s~----Ai~~~NpEi~~-A~e~~ipi~---~r~e~L~elm~~~~~i 110 (459)
T COG0773 44 MTQRLEALGIEI-FIGHD--AENIL--DADVVVVSN----AIKEDNPEIVA-ALERGIPVI---SRAEMLAELMRFRTSI 110 (459)
T ss_pred HHHHHHHCCCEE-ECCCC--HHHCC--CCCEEEEEC----CCCCCCHHHHH-HHHCCCCEE---CHHHHHHHHHHCCEEE
T ss_conf 789999789968-67979--78858--996599965----65799989999-998599816---2899999997077169
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCC---CCCEEEEEECCCHHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHH
Q ss_conf 69866103667523886222787266---553368600220110124442112323983178898635001124652122
Q gi|254780414|r 103 SQSREFGRAFIEIKKNCSLLKGMWEK---GSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179 (520)
Q Consensus 103 ~~~~EyG~~~I~i~~~~~lf~gl~~~---~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV 179 (520)
+-.+-+|+++.. ++..-+... ..++ -+-.++++|..-|+...+.+-.++-.+..--=+.|||++
T Consensus 111 aVaGTHGKTTTT-----smla~vl~~~gldPtf--------~iGG~~~~~g~na~~g~~~~fV~EADEsD~sFl~~~P~~ 177 (459)
T COG0773 111 AVAGTHGKTTTT-----SMLAWVLEAAGLDPTF--------LIGGILKNFGTNARLGSGDYFVAEADESDSSFLHYNPRV 177 (459)
T ss_pred EEECCCCCHHHH-----HHHHHHHHHCCCCCEE--------EECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCE
T ss_conf 994788754089-----9999999867999879--------977744557765545888649999515416502488978
No 346
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=35.23 E-value=31 Score=14.75 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=22.1
Q ss_pred CHHHHHHHHH-------HHHHHHHHHHHCCCHHHHCCCCC
Q ss_conf 0223789873-------89999999981999889426888
Q gi|254780414|r 366 KLVEPLKELF-------KDEVRLLGKELRLPDSFVERHPC 398 (520)
Q Consensus 366 ~liEPl~~l~-------KdEVR~lg~~Lglp~~~~~RhPF 398 (520)
.+.|||+.+. +..++++-+.+|||.++.+|.|+
T Consensus 111 ~i~epl~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~yP~ 150 (266)
T PRK10419 111 ILREPLRHLLSLDKAERLARASEMLKAVDLDDSVLDKRPP 150 (266)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHH
T ss_conf 9999999814999999999999999874998898717843
No 347
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=35.06 E-value=31 Score=14.73 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCCE-E--EEEECCCCCCCCC----HHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHH
Q ss_conf 47799999986223656-9--9997389551562----78999988623698579975889999996689888999
Q gi|254780414|r 234 DSTVAAFLIYEAIGINL-T--CVLVDHGFMRKNE----VENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETK 302 (520)
Q Consensus 234 DStV~A~Ll~kAig~~l-~--~vfVD~GllRknE----~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~K 302 (520)
|-.++.+|-.-|...+. + -+.||+|++|.+= ..+..+...+..|+++.-+-. =|.-..|+..-+++
T Consensus 99 e~~~i~aLs~~A~~~gk~~~V~l~VDtGm~R~Gv~ped~~~~~~~I~~lp~i~l~GI~T---hfaC~~gv~pt~~~ 171 (353)
T cd06815 99 ELETIKALSEEAKKQGKIHKIILMVDLGDLREGVLPEDLLDFVEEILKLPGIELVGIGT---NLGCYGGVLPTEEN 171 (353)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEE---CHHHCCCCCCCHHH
T ss_conf 79999999999998698478999996899957889899999999986599959999888---76357888999999
No 348
>KOG4129 consensus
Probab=34.90 E-value=31 Score=14.71 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCC----HHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999998622365699997389551562----7899998862369857997588999999668988899998875658999
Q gi|254780414|r 238 AAFLIYEAIGINLTCVLVDHGFMRKNE----VENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEV 313 (520)
Q Consensus 238 ~A~Ll~kAig~~l~~vfVD~GllRknE----~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~v 313 (520)
.|.|++- .|.+|+|.||+.+ .++..+-+.+.++.++ -..+.|++.|+ +.|+-|=|-++=++
T Consensus 175 ~A~LL~g-------~ILiDt~nm~~ek~s~kd~~~v~kLe~~~p~~l---~~r~~~fd~Lk-----~ak~d~sgls~~~i 239 (377)
T KOG4129 175 LARLLLG-------PILIDTGNMRKEKTSPKDVEIVKKLEELFPVKL---PERSEFFDELK-----SAKFDISGLSTDDI 239 (377)
T ss_pred HHHHHHC-------CEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHH-----HHHCCCCCCCHHHH
T ss_conf 9998625-------668731445634488437999999998707775---66899999999-----86435335859999
Q ss_pred HHHHHHHCC
Q ss_conf 999997439
Q gi|254780414|r 314 FEEEAKKIG 322 (520)
Q Consensus 314 f~~~a~~~~ 322 (520)
..+-.+.+.
T Consensus 240 LrKD~K~~~ 248 (377)
T KOG4129 240 LRKDLKQFH 248 (377)
T ss_pred HHHHHHHHC
T ss_conf 999899736
No 349
>TIGR00673 cynS cyanate hydratase; InterPro: IPR008076 Cyanase, an enzyme found in bacteria and plants, catalyses the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide, allowing the host organisms to overcome the toxicity of environmental cyanate . The cyanate lyase monomer is composed of two domains: an N-terminal domain that shows structural similarity to the DNA-binding alpha-helix bundle motif, and a C-terminal domain that has an 'open fold' that shows no structural similarity to other proteins . The enzyme is active as a homodecamer of 17kDa subunits, and displays half-site binding of substrates or substrate analogues. The dimer structure reveals the C-terminal domains to be intertwined; the decamer is formed from a pentamer of these dimers. The active site of the enzyme is located between dimers and comprises residues from four adjacent subunits of the homodecamer. Synonym(s): cyanase lyase, cyanase hydrolase ; GO: 0016836 hydro-lyase activity, 0008152 metabolic process.
Probab=34.47 E-value=28 Score=15.12 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHC
Q ss_conf 2237898738999999998199988942
Q gi|254780414|r 367 LVEPLKELFKDEVRLLGKELRLPDSFVE 394 (520)
Q Consensus 367 liEPl~~l~KdEVR~lg~~Lglp~~~~~ 394 (520)
++=--..+=-||||.++..|+|.++.+-
T Consensus 46 ~~ygqa~a~~dea~~v~~~L~L~ed~~~ 73 (156)
T TIGR00673 46 VLYGQAAADADEAKKVAELLDLEEDEVA 73 (156)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 9984206888899999987099811346
No 350
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=34.37 E-value=32 Score=14.66 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 4886999988970578899888865940698
Q gi|254780414|r 6 RSSKVLIIDFGSQFTQLIARRVRESKVYCEV 36 (520)
Q Consensus 6 ~~~~IlIlDfGSQytqLIaRriRelgVyseI 36 (520)
++.+|+||-||||= |-=|..+|+-|+...|
T Consensus 3 k~k~iaViGYGsQG-~AhAlNLrDSG~~V~v 32 (165)
T pfam07991 3 KGKKIAVIGYGSQG-HAHALNLRDSGVNVIV 32 (165)
T ss_pred CCCEEEEEEECCHH-HHHHHHHHHCCCCEEE
T ss_conf 79989999346164-8887230534997899
No 351
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=34.32 E-value=32 Score=14.65 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=39.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 366405640477999999862236569999738955156278999988623698579975889999996
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKL 293 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L 293 (520)
|++|+||-=-||++++|..+ +-|+|++---.|+-+. +.++ .-|+++.--| ....+.++
T Consensus 3 iv~GvsGsGKSTia~~La~~-----lg~~~i~~D~~h~~~n--~~km---~~G~pL~d~d-r~~wl~~l 60 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAER-----LGAPFIDGDDLHPPAN--IAKM---AAGIPLNDED-RWPWLQAL 60 (150)
T ss_pred EEECCCCCCHHHHHHHHHHH-----HCCCEECCCCCCCHHH--HHHH---HCCCCCCCCC-HHHHHHHH
T ss_conf 99918999999999999997-----1995641543354768--9998---6799988523-78999999
No 352
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=33.97 E-value=33 Score=14.61 Aligned_cols=133 Identities=17% Similarity=0.343 Sum_probs=67.2
Q ss_pred CEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCC-CCCC-----CHHHHHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHH
Q ss_conf 01124652122215202577998755010644-1114-----06789999999976504440-36640564047799999
Q gi|254780414|r 169 KYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQ-DNWV-----MSSYHKEIVSRIKEQVGNER-VICAVSGGVDSTVAAFL 241 (520)
Q Consensus 169 ~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~-~~W~-----~~~~~~~~i~~Ir~~vg~~k-Vi~~lSGGVDStV~A~L 241 (520)
-+=||+-| .-+|- +|..||....+-. ..|- --.|.-+.++.||+.||++. |.+=+|+ .|
T Consensus 167 GfDGVEIH-----~ahGY-Ll~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~-~d------- 232 (336)
T cd02932 167 GFDVIEIH-----AAHGY-LLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISA-TD------- 232 (336)
T ss_pred CCCEEEEC-----CCCCH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC-CC-------
T ss_conf 99999863-----13747-999836941167778679978999889999999999983998870689645-23-------
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98622365699997389551562789999886236985799758899999966898889999887565899999999743
Q gi|254780414|r 242 IYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKI 321 (520)
Q Consensus 242 l~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~ 321 (520)
++++|+ ...|..++.+.+.+ .|++...|.... ..|..+- -.+.-|---|-+..++.
T Consensus 233 ------------~~~~g~-~~~e~~~~a~~l~~-~gvd~i~vs~G~---------~~~~~~~-~~~~~~~~~~a~~ik~~ 288 (336)
T cd02932 233 ------------WVEGGW-DLEDSVELAKALKE-LGVDLIDVSSGG---------NSPAQKI-PVGPGYQVPFAERIRQE 288 (336)
T ss_pred ------------CCCCCC-CHHHHHHHHHHHHH-CCCCEEEECCCC---------CCCCCCC-CCCCCCCHHHHHHHHHH
T ss_conf ------------578998-99999999999997-599789955898---------7766667-77864267999999987
Q ss_pred CCCEEEEECCCC-CHHHHH
Q ss_conf 997099864622-024542
Q gi|254780414|r 322 GGAQFLGQGTLY-PDVIES 339 (520)
Q Consensus 322 ~~~~~L~QGTly-pDvIES 339 (520)
-+....+.|-+| |+..|.
T Consensus 289 ~~ipvi~~G~i~~p~~ae~ 307 (336)
T cd02932 289 AGIPVIAVGLITDPEQAEA 307 (336)
T ss_pred CCCCEEEECCCCCHHHHHH
T ss_conf 8983999799899999999
No 353
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit; InterPro: IPR012748 This entry describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (IPR012744 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused..
Probab=33.77 E-value=33 Score=14.59 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=21.5
Q ss_pred HHCCCCC----CCEEECCCCCCEEEEEECCC-CEEEEE
Q ss_conf 1012444----21123239831788986350-011246
Q gi|254780414|r 142 VEHIPEG----FEVIASSDSTPFAFIADEKR-KYYAVQ 174 (520)
Q Consensus 142 V~~lP~g----f~viA~S~~~~iaai~~~~~-~iyGVQ 174 (520)
+..+|+. .-+.+..++..+|.|+-.++ .+|++|
T Consensus 8 ~~~~~~~e~g~~g~~~~~~d~q~AiFr~~~~d~~yA~~ 45 (117)
T TIGR02378 8 LEEIPEEEAGISGVCVLLGDTQLAIFRVPGDDQVYAIQ 45 (117)
T ss_pred CCCCCCCCCCCEEEEEECCCCEEEEEEECCCCEEEEEE
T ss_conf 01357121771118974799249898949998488840
No 354
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=33.64 E-value=23 Score=15.74 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf 999999997650444036640564047799999986223-65699997
Q gi|254780414|r 209 HKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLV 255 (520)
Q Consensus 209 ~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfV 255 (520)
.+.+.+.+++.==|.=||. ||.||-.-||||.+-.- .++.+..|
T Consensus 157 ~~~al~~~k~l~LdgLVII---GGDdSNTnAA~LAEyF~~~~~~t~vi 201 (566)
T TIGR02477 157 FAKALETAKKLKLDGLVII---GGDDSNTNAALLAEYFAKKGLKTQVI 201 (566)
T ss_pred HHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999999876089648997---47986799999999999738992278
No 355
>PRK08227 aldolase; Validated
Probab=33.43 E-value=33 Score=14.55 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=34.2
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHH-----HCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2365699997389551562789999886-----23698579975889999996689888999988756589999999974
Q gi|254780414|r 246 IGINLTCVLVDHGFMRKNEVENIISLFK-----GYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKK 320 (520)
Q Consensus 246 ig~~l~~vfVD~GllRknE~~~v~~~~~-----~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~ 320 (520)
+|-.-.++.|+-|- .+|.+++.++-+ ...|+++..+-+ ..-..+.||+ ++.-.-+.+.+
T Consensus 133 lGAdAVsv~v~iGs--~~E~~~l~~lg~v~~e~~~~GmPlla~~~-----~g~~~~~d~~---------~va~aaRia~E 196 (291)
T PRK08227 133 LNVCAVAAQVFIGS--EYETQSIKNIIQLVDAGLRYGMPTMAVTA-----VGKDMVRDAR---------YFSLATRIAAE 196 (291)
T ss_pred CCCCEEEEEEECCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCCCHH---------HHHHHHHHHHH
T ss_conf 79978999863599--32899999999999999982998799834-----6877777789---------99999999999
Q ss_pred CC
Q ss_conf 39
Q gi|254780414|r 321 IG 322 (520)
Q Consensus 321 ~~ 322 (520)
+|
T Consensus 197 LG 198 (291)
T PRK08227 197 MG 198 (291)
T ss_pred HC
T ss_conf 78
No 356
>KOG2707 consensus
Probab=33.38 E-value=33 Score=14.55 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=46.4
Q ss_pred CCCEEEECCCCCCCCCC-CCCCCCHH-HHHCCCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 99799998538899999-99753768-98089988997789999899709699986986610366752388622278726
Q gi|254780414|r 50 NPQAIILSGSPASSLDI-DSPQIPKE-ILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE 127 (520)
Q Consensus 50 ~p~GIILSGGP~SV~d~-~ap~~~~~-I~~~~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~ 127 (520)
+.++|-.+=||.-+..- .-..+.+. .-.+++|++|+ |.+.|+++--..+.. .-+|-...+-+...
T Consensus 103 dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipV---HHMeAHAL~~rl~~~-~v~FPFl~lLvSGG--------- 169 (405)
T KOG2707 103 DLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPV---HHMEAHALSIRLVDD-SVRFPFLALLVSGG--------- 169 (405)
T ss_pred CCEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHCCC-CCCCCEEEEEEECC---------
T ss_conf 51169996389964315654899999998635886405---577776788875168-76883456764078---------
Q ss_pred CCCCEEEEEECCC-HHHCCCCCCCEEECCCC-CCEEEEEECCCCEEEEEEEEH
Q ss_conf 6553368600220-11012444211232398-317889863500112465212
Q gi|254780414|r 128 KGSKQQVWMSHGD-QVEHIPEGFEVIASSDS-TPFAFIADEKRKYYAVQFHPE 178 (520)
Q Consensus 128 ~~~~~~VwmSH~D-~V~~lP~gf~viA~S~~-~~iaai~~~~~~iyGVQFHPE 178 (520)
|.. .+..-+.+|+++..|-+ .+=+++- +-.+..|+-+|||
T Consensus 170 ----------H~llvla~~~~~~~llg~TvDiApGe~lD-K~ar~Lgl~~~~e 211 (405)
T KOG2707 170 ----------HTLLVLANGVGDHELLGQTVDIAPGEALD-KCARRLGLLGHPE 211 (405)
T ss_pred ----------CEEEEEECCCCCEEEEECCCCCCHHHHHH-HHHHHHCCCCCCC
T ss_conf ----------06999832665303550003666177899-9999846777840
No 357
>TIGR01208 rmlA_long glucose-1-phosphate thymidylyltransferase; InterPro: IPR005908 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005907 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. .
Probab=33.36 E-value=21 Score=15.97 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=48.6
Q ss_pred EEEEEECCCCEEEEEEEEH---HHCCCHHHHHHHH--HHHHH-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 7889863500112465212---2215202577998--75501-0644111406789999999976504440366405640
Q gi|254780414|r 160 FAFIADEKRKYYAVQFHPE---VVHTVGGSQLIDN--FVHHV-AGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGV 233 (520)
Q Consensus 160 iaai~~~~~~iyGVQFHPE---V~hT~~G~~iL~N--Fl~~I-c~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGV 233 (520)
||-++...+.+..+===|+ +..---|.-||++ -+|++ ...+|+|.=+==|-+.|+.+-++ +.||-
T Consensus 144 VA~l~d~G~~i~~LvEKPk~PPSNLAvvGlY~F~pPe~if~~~~~~kPSwRGElEITD~IQ~lIe~--Gy~V~------- 214 (361)
T TIGR01208 144 VAELEDDGKRILKLVEKPKEPPSNLAVVGLYMFRPPELIFEAIKNIKPSWRGELEITDAIQYLIEK--GYKVG------- 214 (361)
T ss_pred EEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC--CCEEE-------
T ss_conf 589924897999988338657877012334533877798889852888776621577577565315--83777-------
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 4779999998622365699997389
Q gi|254780414|r 234 DSTVAAFLIYEAIGINLTCVLVDHG 258 (520)
Q Consensus 234 DStV~A~Ll~kAig~~l~~vfVD~G 258 (520)
+.++++=.-|||
T Consensus 215 -------------~~~v~GWWkDTG 226 (361)
T TIGR01208 215 -------------GSKVKGWWKDTG 226 (361)
T ss_pred -------------EEEEEEEECCCC
T ss_conf -------------799978870159
No 358
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=33.20 E-value=19 Score=16.27 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=47.7
Q ss_pred EEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 2122215202577998755010644111406789999999976504-440366405640477999999862236569999
Q gi|254780414|r 176 HPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVG-NERVICAVSGGVDSTVAAFLIYEAIGINLTCVL 254 (520)
Q Consensus 176 HPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg-~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vf 254 (520)
.|+|...-.|+.++.||. +||..= +=.++.+..-...++-.+.. |++--+-+.|=.+++....+|.+-|.+=+.|--
T Consensus 8 ~~~v~~eG~~KT~i~Nf~-dIa~~L-~R~~~~v~kfl~~ELgt~~~id~~~~lii~G~~~~~~i~~~l~~yI~~yVlC~~ 85 (110)
T smart00653 8 PPQVLREGKGKTVIVNFA-DIAKAL-NRPPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRYIKEYVLCPE 85 (110)
T ss_pred CCEEEEECCCCEEEECHH-HHHHHH-CCCHHHHHHHHHHHHCCCEEECCCCEEEEEEEECHHHHHHHHHHHHHHEEECCC
T ss_conf 954999567868988799-999887-959899999998874885588789709997341899999999999854899999
No 359
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=33.17 E-value=33 Score=14.52 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCCC-CH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 57889988886594069852898-98-------899723997999985388999999975376898089988997
Q gi|254780414|r 19 FTQLIARRVRESKVYCEVIAFKN-AL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 19 ytqLIaRriRelgVyseI~P~~~-~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
-.+-|.+..++.|....+..++. .. +.+...+++|||++.+- . +.+.+...+-+.++|+.-+
T Consensus 17 l~~gi~~~~~~~GY~~~i~~~~~~~~~~~~~~~~~l~~~~vdGiIl~~~~----~-~~~~~~~~l~~~~iPvV~i 86 (270)
T cd01545 17 IQLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPL----S-DNPELLDLLDEAGVPYVRI 86 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC----C-CCHHHHHHHHHCCCCEEEE
T ss_conf 99999999998499899996999998999999999996699989994788----8-9999999999779979998
No 360
>PHA01622 CRISPR-associated Cas4-like protein
Probab=32.84 E-value=34 Score=14.49 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=26.6
Q ss_pred EECCCCHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf 98897057889988886-59406985289898899723997999985388
Q gi|254780414|r 13 IDFGSQFTQLIARRVRE-SKVYCEVIAFKNALDYFKEQNPQAIILSGSPA 61 (520)
Q Consensus 13 lDfGSQytqLIaRriRe-lgVyseI~P~~~~~e~i~~~~p~GIILSGGP~ 61 (520)
+|.|+||--.|-|.+|| |+.++|+- - ..+..||=+||--.
T Consensus 49 ~d~G~~~H~~veq~~re~lnCetEv~-I--------s~ei~GI~IsGRiD 89 (204)
T PHA01622 49 LDLGEQYHERIEQYFKEKLNCQTEVE-I--------KDEIEGIKISGRID 89 (204)
T ss_pred HCCCHHHHHHHHHHHHHHHCCEEECC-C--------CCCEEEEEEEEEEE
T ss_conf 20126999999999998737457323-3--------55401599972550
No 361
>PRK03202 6-phosphofructokinase; Provisional
Probab=32.71 E-value=9.6 Score=18.41 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=23.3
Q ss_pred CEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHH
Q ss_conf 79999853889999999753768980899889977899998
Q gi|254780414|r 52 QAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIM 92 (520)
Q Consensus 52 ~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlL 92 (520)
-||+-||||.+....-.-.+-......+.-++|+.+|.+=|
T Consensus 5 iaIltsGG~~pGmNa~ir~vv~~a~~~g~~v~G~~~G~~GL 45 (323)
T PRK03202 5 IGVLTSGGDAPGMNAAIRGVVRTAISEGLEVYGIYNGYLGL 45 (323)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 99993688867789999999999997899999991677886
No 362
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=32.53 E-value=34 Score=14.45 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 57889988886594069852898988997
Q gi|254780414|r 19 FTQLIARRVRESKVYCEVIAFKNALDYFK 47 (520)
Q Consensus 19 ytqLIaRriRelgVyseI~P~~~~~e~i~ 47 (520)
.+.+|+|.+|++|+-++.+-...+.+.+.
T Consensus 43 ~~~~V~ral~~~g~~~~~i~~~DD~D~lR 71 (354)
T cd00674 43 TADAVRRALRDLGFEVRLIYSWDDYDPLR 71 (354)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCHHC
T ss_conf 89999999997599679999840555100
No 363
>KOG0303 consensus
Probab=32.36 E-value=34 Score=14.43 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=20.3
Q ss_pred CCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEH
Q ss_conf 12444211232398317889863500112465212
Q gi|254780414|r 144 HIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPE 178 (520)
Q Consensus 144 ~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPE 178 (520)
.+|++....-.+ .|+.-+....++.--|||||-
T Consensus 110 ~IPe~~l~~~lt--epvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303 110 QIPENGLTRDLT--EPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred ECCCCCCCCCCC--CCEEEEEECCEEEEEEEECCC
T ss_conf 788764446766--636888511236788852344
No 364
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=32.14 E-value=35 Score=14.41 Aligned_cols=31 Identities=32% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 44886999988970578899888865940698
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEV 36 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI 36 (520)
.++.+|+||-||||= |-=|..+|+-|+...|
T Consensus 14 lk~k~iaVIGYGsQG-~AhAlNLrDSG~~V~v 44 (335)
T PRK13403 14 LQGKTVAVIGYGSQG-HAQAQNLRDSGVEVVV 44 (335)
T ss_pred HCCCEEEEEEECCHH-HHHHHHHHHCCCCEEE
T ss_conf 879979997567076-8988564763997799
No 365
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.12 E-value=35 Score=14.41 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=66.3
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC---HHHHHHHHHHCCCCCEEEEEH-H-HHHHHHHCC
Q ss_conf 44403664056404779999998622365699997389551562---789999886236985799758-8-999999668
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE---VENIISLFKGYPNFPLRVVDA-S-ERFIRKLKN 295 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE---~~~v~~~~~~~~~~~l~~vda-~-~~Fl~~L~g 295 (520)
+..++|+-.-=.+||+-.---+..+ |-..+..|-|--.--+.| ..+..+.|-+.+|+|++--|. . +.|+.+.||
T Consensus 2 ~~~kiLlH~CCAPcs~y~le~l~~~-~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg 80 (204)
T COG1636 2 GRPKLLLHSCCAPCSGYVLEKLRDS-GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKG 80 (204)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHC
T ss_conf 9870789862577718999999965-866699974899892699999999999999982970553575558999999616
Q ss_pred CCCHHHHHHHHHHHHHHHHHH---HHHHCCC
Q ss_conf 988899998875658999999---9974399
Q gi|254780414|r 296 IVDPETKRKVIGQLFIEVFEE---EAKKIGG 323 (520)
Q Consensus 296 v~DPE~KRkiIG~~Fi~vf~~---~a~~~~~ 323 (520)
..|--++-+---.-|==-|++ .|.++|-
T Consensus 81 ~E~EpE~G~RC~~Cfd~Rle~tA~~A~e~G~ 111 (204)
T COG1636 81 MEDEPEGGKRCTMCFDMRLEKTAKKAKELGF 111 (204)
T ss_pred CHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 2007777842377899989999999998296
No 366
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.11 E-value=21 Score=15.96 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=37.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHH
Q ss_conf 69999889705788998888659406985289898899723997999985388999999975376898089988997789
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG 88 (520)
|+.|+-..+.-++-++..+..+-- -+ .+...+++-+|-=||-++. .+........++|+|||-.|
T Consensus 2 k~~i~~~~~~~s~~~~~~l~~~~~-----~~-----~~~~d~~DlviviGGDGT~-----L~a~~~~~~~~iPilGIN~G 66 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLK-----KK-----LAVEDGADYLFVLGGDGFF-----VSTAANYNCAGCKVVGINTG 66 (259)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH-----CC-----CCCCCCCCEEEEECCHHHH-----HHHHHHHCCCCCCEEEEECC
T ss_conf 699993888657999999999985-----47-----8678899999998971999-----99999855479968999669
Q ss_pred H
Q ss_conf 9
Q gi|254780414|r 89 Q 89 (520)
Q Consensus 89 ~ 89 (520)
+
T Consensus 67 ~ 67 (259)
T PRK00561 67 H 67 (259)
T ss_pred C
T ss_conf 7
No 367
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=32.10 E-value=35 Score=14.41 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCEEEE--ECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECH
Q ss_conf 8899888865940698--5289898-------89972399799998538899999997537689808998899778
Q gi|254780414|r 21 QLIARRVRESKVYCEV--IAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICY 87 (520)
Q Consensus 21 qLIaRriRelgVyseI--~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICy 87 (520)
+-+.+.++++|.-.++ ...+.+. +.+...+++|||++.+.. .+..+.+.+-+.++|++.+-.
T Consensus 20 ~g~~~~~~~~g~~~~l~~~~~~~~~~~~~~~i~~l~~~~vd~ii~~~~~~-----~~~~~~~~~~~~~iPvv~~~~ 90 (269)
T cd01391 20 AGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSS-----SALAVVELAAAAGIPVVSLDA 90 (269)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHHHCCCEEEEECC
T ss_conf 99999999819976999984999999999999999974999999468874-----448999999976981999678
No 368
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.02 E-value=35 Score=14.40 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCHH-------HHHHCCCCEEEECCCCCCCCCCC-CCCCCHHHHHCCCCEEEE
Q ss_conf 7057889988886594069852898988-------99723997999985388999999-975376898089988997
Q gi|254780414|r 17 SQFTQLIARRVRESKVYCEVIAFKNALD-------YFKEQNPQAIILSGSPASSLDID-SPQIPKEILESNIPLLGI 85 (520)
Q Consensus 17 SQytqLIaRriRelgVyseI~P~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~-ap~~~~~I~~~~iPILGI 85 (520)
+|..+-|.+..++.|+..-+...+.+.+ .+...+++|+|+.++-.+ +.. .+..-..+.+.++|++-+
T Consensus 15 ~~l~~gie~~~~~~Gy~~li~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~--~~~~~~~~~~~~~~~~iPvV~~ 89 (273)
T cd06292 15 PAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHA--DTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 99999999999986998999978999799999999999649984999247666--3315789999999669988999
No 369
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=31.88 E-value=35 Score=14.38 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHH-HHH-CC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9999999976504-440366405640477999999-862-23-6569999738955156278999988623698579975
Q gi|254780414|r 209 HKEIVSRIKEQVG-NERVICAVSGGVDSTVAAFLI-YEA-IG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVD 284 (520)
Q Consensus 209 ~~~~i~~Ir~~vg-~~kVi~~lSGGVDStV~A~Ll-~kA-ig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vd 284 (520)
.+...+.|++.+. ++++.++||||=--.-....| ++. +. ++++-.++|-=+.-.+..+--...+++++- ..++
T Consensus 8 a~~i~~~i~~~i~~~~~~~l~lsGGstp~~~y~~L~~~~~ldw~~v~~~~~DER~V~~~~~~Sn~~~~~~~l~---~~~~ 84 (219)
T cd01400 8 ADRIAEALAAAIAKRGRFSLALSGGSTPKPLYELLAAAPALDWSKVHVFLGDERCVPPDDPDSNYRLAREALL---SHVA 84 (219)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCHHEEEEEEECCCCCCCCCHHHHHHHHHHHH---CCCC
T ss_conf 9999999999999779889998489779999999855458990363899600344699762549999999853---2479
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC------CCEEEEECC
Q ss_conf 88999999668988899998875658999999997439------970998646
Q gi|254780414|r 285 ASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG------GAQFLGQGT 331 (520)
Q Consensus 285 a~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~------~~~~L~QGT 331 (520)
....++-.+.+-.+||+- .+-+++..++.. +.-+|+-|.
T Consensus 85 ~~~~~i~~~~~~~~~~~~--------~~~y~~~i~~~~~~~~~~Dl~lLGmG~ 129 (219)
T cd01400 85 IPAANIHPIPTELGPEDA--------AAAYEKELRALFGGVPPFDLVLLGMGP 129 (219)
T ss_pred CCHHHCCCCCCCCCHHHH--------HHHHHHHHHHHCCCCCCCCEEEECCCC
T ss_conf 989995389998899999--------999999999853888886489974668
No 370
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.76 E-value=35 Score=14.37 Aligned_cols=70 Identities=17% Similarity=0.313 Sum_probs=42.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----------------CCCCEEEECCCCCCCCCCCCCC
Q ss_conf 886999988970578899888865940698528989889972----------------3997999985388999999975
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKE----------------QNPQAIILSGSPASSLDIDSPQ 70 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~----------------~~p~GIILSGGP~SV~d~~ap~ 70 (520)
..||+|+-+|- -..-.+|.++..|....+. |...+.+.. .+.+-||.|.|= ..+.|.
T Consensus 3 ~KkvlV~GlG~-SG~s~a~~L~~~g~~v~~~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGi----~~~~p~ 75 (418)
T PRK00683 3 LQRVVVLGLGV-TGKSVARFLAQKGVYVIGV--DNSLEALQSCPYIHERYLEGAEEFPEQVDLVVRSPGI----KPYHPW 75 (418)
T ss_pred CCEEEEEEECH-HHHHHHHHHHHCCCEEEEE--CCCHHHHHHCCHHHHHCCCCHHHCCCCCCEEEECCCC----CCCCHH
T ss_conf 86699980888-7999999999782989998--2981454546145554056233242349899989985----998899
Q ss_pred CCHHHHHCCCCEEE
Q ss_conf 37689808998899
Q gi|254780414|r 71 IPKEILESNIPLLG 84 (520)
Q Consensus 71 ~~~~I~~~~iPILG 84 (520)
+. ...+.++||.+
T Consensus 76 ~~-~a~~~~i~i~s 88 (418)
T PRK00683 76 VE-AAVALKIPVVT 88 (418)
T ss_pred HH-HHHHCCCCCCC
T ss_conf 99-99986997540
No 371
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=31.76 E-value=35 Score=14.37 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=40.8
Q ss_pred EEEEECCCCH----HHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9999889705----788998888659406985289898-------89972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQF----TQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQy----tqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
++|=|+...| .+-|.+..++.|+...+...+.+. +.+...+++|||+.+... + +.....+.+.
T Consensus 4 vivp~i~npff~~~~~gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl~~~~~-----~-~~~~~~l~~~ 77 (259)
T cd01542 4 VIVPRLDSFSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTI-----T-DEHREAIKKL 77 (259)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----C-HHHHHHHHHC
T ss_conf 997998687999999999999998699899997899989999999999956999899937777-----7-5999999966
Q ss_pred CCCEEEEC
Q ss_conf 99889977
Q gi|254780414|r 79 NIPLLGIC 86 (520)
Q Consensus 79 ~iPILGIC 86 (520)
++|+.-+.
T Consensus 78 ~iPvV~i~ 85 (259)
T cd01542 78 NVPVVVVG 85 (259)
T ss_pred CCCEEEEC
T ss_conf 99999959
No 372
>PRK10037 cell division protein; Provisional
Probab=31.51 E-value=36 Score=14.34 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=33.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHH
Q ss_conf 3664056404779999998622---3656999973895515627899998862369857997588
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAI---GINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDAS 286 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAi---g~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~ 286 (520)
+|+++-|||-+|..++-|.-|+ |+++..| |- ...+.++-+||+++...|--
T Consensus 5 al~s~kGGVGkTTltAnLA~aL~~~g~~VlaI--D~---------dpqN~Lrlhfg~~~~~~~Gw 58 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSLQMLGENVLVI--DA---------CPDNLLRLSFNVDFTHRQGW 58 (250)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE--EC---------CHHHHHHHHCCCCCCCCCCH
T ss_conf 99607888768999999999999779918999--57---------82566787549985447729
No 373
>PRK00766 hypothetical protein; Provisional
Probab=31.47 E-value=36 Score=14.34 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCCHHHHHHH-HHHHHC-CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEE--E--HHHHHHHHHCC-CCCHHHHH
Q ss_conf 6404779999-998622-3656999973895515627899998862369857997--5--88999999668-98889999
Q gi|254780414|r 231 GGVDSTVAAF-LIYEAI-GINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV--D--ASERFIRKLKN-IVDPETKR 303 (520)
Q Consensus 231 GGVDStV~A~-Ll~kAi-g~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~v--d--a~~~Fl~~L~g-v~DPE~KR 303 (520)
+|-|+|=+.+ |+.+.- -+++.+||.|-=-.----.-.+..++++ ++++++.| . ..+..-++|+. ..|+|++.
T Consensus 51 DG~DaT~~i~~mv~~~~~r~~i~~VlL~Git~aGFNvvD~~~l~~~-tg~PVI~V~~~~P~~~~i~~AL~khf~d~e~R~ 129 (194)
T PRK00766 51 DGLDATEAIIDMINSSRHRGQLRVIMLDGITYAGFNVVDIEELHRE-TGLPVIVVVRKKPDFEAIESALRKHFSDGEERW 129 (194)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEEEECHHHHHHH-HCCCEEEEEEECCCHHHHHHHHHHHCCCHHHHH
T ss_conf 8952799999999706556654799987753521478369999998-799989999637976899999998689889999
Q ss_pred HHHH
Q ss_conf 8875
Q gi|254780414|r 304 KVIG 307 (520)
Q Consensus 304 kiIG 307 (520)
++|-
T Consensus 130 ~~~~ 133 (194)
T PRK00766 130 KLIK 133 (194)
T ss_pred HHHH
T ss_conf 9998
No 374
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.28 E-value=36 Score=14.31 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHCCCCEEEECHHHHHHHHHCCCEEEE---------CCCCCCC-EEEEEEC-CCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 808998899778999989970969998---------6986610-3667523-886222787266553368600220
Q gi|254780414|r 76 LESNIPLLGICYGQQIMCQSLGGKTKN---------SQSREFG-RAFIEIK-KNCSLLKGMWEKGSKQQVWMSHGD 140 (520)
Q Consensus 76 ~~~~iPILGICyG~QlLa~~~GG~V~~---------~~~~EyG-~~~I~i~-~~~~lf~gl~~~~~~~~VwmSH~D 140 (520)
.+.++-+-|.--| ++.+|+-++.= +.-+.-| .-.++++ .++++.+++.+..-....+.+|-|
T Consensus 77 iesG~G~aG~Hg~---~~D~fr~~~~yqf~igGqwvaHPgn~~idytVqi~~~~spl~egisdF~y~sEqYYmhvD 149 (239)
T COG3828 77 IESGVGFAGFHGG---MGDAFRNSVDYQFIIGGQWVAHPGNQGIDYTVQITGPDSPLNEGISDFAYASEQYYMHVD 149 (239)
T ss_pred HHCCCCEEEECCC---CCCCCCCCCCEEEEECCEEECCCCCCCCCEEEEECCCCCHHHCCCCCCCCCHHHEEECCC
T ss_conf 9739753441464---200137875569996888763788676655888337997033073213420021044048
No 375
>pfam12023 DUF3511 Domain of unknown function (DUF3511). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 50 amino acids in length. This domain has two completely conserved residues (Y and K) that may be functionally important.
Probab=31.09 E-value=25 Score=15.44 Aligned_cols=10 Identities=60% Similarity=0.893 Sum_probs=7.7
Q ss_pred CCCCHHHHHH
Q ss_conf 8988899998
Q gi|254780414|r 295 NIVDPETKRK 304 (520)
Q Consensus 295 gv~DPE~KRk 304 (520)
+-+|||.|||
T Consensus 2 ~~~DpE~kRk 11 (47)
T pfam12023 2 GFSDPEMKRK 11 (47)
T ss_pred CCCCHHHHHH
T ss_conf 8677889889
No 376
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=31.04 E-value=36 Score=14.29 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=7.6
Q ss_pred HHHCCCCEEEECHH
Q ss_conf 98089988997789
Q gi|254780414|r 75 ILESNIPLLGICYG 88 (520)
Q Consensus 75 I~~~~iPILGICyG 88 (520)
+-+.++|+++.+-+
T Consensus 94 ~~~~~ip~i~~~~~ 107 (362)
T cd06343 94 LNEKKVPQLFPASG 107 (362)
T ss_pred HHHHCCEEEEECCC
T ss_conf 88627269974046
No 377
>PRK03846 adenylylsulfate kinase; Provisional
Probab=30.97 E-value=35 Score=14.37 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Q ss_conf 1140678999999997650444036640564047799999986223656999973895515
Q gi|254780414|r 202 NWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRK 262 (520)
Q Consensus 202 ~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRk 262 (520)
.|...+.-...-+....+-|-=--+.||||-=-||+|.+|-.+--.....++++|---||+
T Consensus 5 ~~~~~~v~~~~r~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~ 65 (198)
T PRK03846 5 VWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRH 65 (198)
T ss_pred CEECCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 2447887999999986899869998799999889999999999997599759977799987
No 378
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=30.94 E-value=15 Score=16.93 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=28.6
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 9862236569999738955156278999988623698579975889999996
Q gi|254780414|r 242 IYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKL 293 (520)
Q Consensus 242 l~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L 293 (520)
|..+..++ ..||=|-=+|-+. ..++.++.+.. .-|+.+.|-|..|=..|
T Consensus 498 l~~~M~~~-~gvFR~~~~l~~a-~~~i~eL~eR~-~~~v~i~DKs~~fNTdL 546 (636)
T TIGR01812 498 LQETMEAN-VGVFRTEELLKKA-VDEIEELRERR-YKNVKINDKSKVFNTDL 546 (636)
T ss_pred HHHHHHCC-CEEEECCHHHHHH-HHHHHHHHHCC-CCCEEEEECCCEECHHH
T ss_conf 98886658-5798773227889-99999986100-16456740542123668
No 379
>PTZ00340 O-sialoglycoprotein endopeptidase; Provisional
Probab=30.83 E-value=21 Score=15.95 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCCCEEEECCCCCCCCCCCCCC----CCHH-HHHCCCCEEEEC
Q ss_conf 3997999985388999999975----3768-980899889977
Q gi|254780414|r 49 QNPQAIILSGSPASSLDIDSPQ----IPKE-ILESNIPLLGIC 86 (520)
Q Consensus 49 ~~p~GIILSGGP~SV~d~~ap~----~~~~-I~~~~iPILGIC 86 (520)
.++++|=.+-||.-+ .+.. +.+. .+.+++|++||-
T Consensus 76 ~did~IAvT~gPGL~---g~L~VG~~~AK~La~~~~~Pli~Vn 115 (348)
T PTZ00340 76 SDISLICYTKGPGMG---APLAVGATVAKTLSLLWGKPLVGVN 115 (348)
T ss_pred HCCCEEEECCCCCCH---HHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 118579972799851---6589999999999998099835213
No 380
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=30.76 E-value=37 Score=14.25 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCHH--H-HHHHHHHHHCCCC-EEEEEECCCCC
Q ss_conf 57799875501064411140678999999997650444-036640564047--7-9999998622365-69999738955
Q gi|254780414|r 186 SQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNE-RVICAVSGGVDS--T-VAAFLIYEAIGIN-LTCVLVDHGFM 260 (520)
Q Consensus 186 ~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~-kVi~~lSGGVDS--t-V~A~Ll~kAig~~-l~~vfVD~Gll 260 (520)
..++++|+-. . -|++.+=-...+++|.+..... ..--.|-|-|-| | ||+.-+-.|+... -.++++-|-.|
T Consensus 244 ~~~~~~~~~~---L--PF~LT~~Q~~~~~ei~~dl~~~~~m~rllqGDVGsGKT~va~~a~~~~~~~g~q~a~maPTeiL 318 (677)
T PRK10917 244 GELLKKFLAS---L--PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEIL 318 (677)
T ss_pred HHHHHHHHHH---C--CCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHH
T ss_conf 6999999980---9--9988988999999999876599542777328767888999999999999819948998767999
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 156278999988623698579975
Q gi|254780414|r 261 RKNEVENIISLFKGYPNFPLRVVD 284 (520)
Q Consensus 261 RknE~~~v~~~~~~~~~~~l~~vd 284 (520)
-..-.+...+.|.. +++++...-
T Consensus 319 a~Qh~~~~~~~~~~-~~i~v~llt 341 (677)
T PRK10917 319 AEQHYRNLKKWLEP-LGIRVALLT 341 (677)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEE
T ss_conf 99999999987763-498899840
No 381
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=30.47 E-value=33 Score=14.53 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=65.8
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 21520257799875501064411140678999999997650444036640564047799999986223656999973895
Q gi|254780414|r 180 VHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGF 259 (520)
Q Consensus 180 ~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~Gl 259 (520)
.+|.+-.+-+...|.++|.-+.+++..+|-+++.+.|++--..+|.++.+ || ..|=-|||-+.+. ++-.
T Consensus 45 Kp~~~e~~~ipH~l~Dildp~e~y~~~~F~~~~~~~~~~i~~~Gkipl~V-GG------T~lY~k~l~~gl~----~~~~ 113 (307)
T TIGR00174 45 KPSLQERKGIPHHLIDILDPSESYSAADFQTQALNAIADITARGKIPLLV-GG------TGLYLKALLEGLS----PTPS 113 (307)
T ss_pred CCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-CC------HHHHHHHHHHCCC----CCCC
T ss_conf 88968753498158513471200370889999999999998569834886-85------7889999971477----7755
Q ss_pred C-CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 5-156278999988623698579975889999996689888999988756589
Q gi|254780414|r 260 M-RKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFI 311 (520)
Q Consensus 260 l-RknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi 311 (520)
. ++.=.++ ++...+..|. +..+..|+.| ||+.--||==+-..
T Consensus 114 ~~~~~~r~~-~~~~~~~~g~--------~~ly~~L~~~-DP~~a~~ihPND~~ 156 (307)
T TIGR00174 114 AEDKLIRES-LEILAERQGK--------SFLYKELKKV-DPVAAAKIHPNDTR 156 (307)
T ss_pred CCCHHHHHH-HHHHHHHCCH--------HHHHHHHHHC-CHHHHHHHCCCCHH
T ss_conf 565057999-9999985491--------5788877750-76989721776147
No 382
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases; InterPro: IPR013370 This family consists of muconate cycloisomerase (5.5.1.1 from EC) and chloromuconate cycloisomerase (5.5.1.7 from EC), enzymes that often overlap in specificity. It does not include more distantly related proteins such as mandelate racemase (5.1.2.2 from EC).; GO: 0018849 muconate cycloisomerase activity, 0018850 chloromuconate cycloisomerase activity, 0030145 manganese ion binding.
Probab=30.23 E-value=19 Score=16.36 Aligned_cols=63 Identities=32% Similarity=0.577 Sum_probs=32.1
Q ss_pred EEEEEECCCCHHH-HHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 0344302320113-203202237898738999999998199988942688898311122100036789999999
Q gi|254780414|r 349 IIKSHHNVGGLPE-HMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRE 421 (520)
Q Consensus 349 ~IKsHHNvgglp~-~~~~~liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ 421 (520)
+|=|=|----+|. .+.=+|+=|| |+|||.=. ..|.-. =..=|==-||||+|- +..+|++.+|+
T Consensus 305 tiASah~f~~~~~l~~GTELFGPL--LL~~~il~--~~l~Y~--~f~LhlP~GPGLG~~----~D~DK~~~~rR 368 (369)
T TIGR02534 305 TIASAHFFAAFPELEFGTELFGPL--LLKDEILT--EPLQYE--DFQLHLPAGPGLGVE----VDEDKVEFYRR 368 (369)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCC--CCCHHHHC--CCCCCC--CCEEECCCCCCCCEE----ECHHHHHHCCC
T ss_conf 999999984135666464124631--11336535--787545--764652478789503----34557743038
No 383
>pfam01606 Arteri_env Arterivirus envelope protein. This family consists of viral envelope proteins from the arterivirus genus; this includes porcine reproductive and respiratory virus (PRRSV) envelope protein GP3 and lactate dehydrogenase elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=30.03 E-value=9.5 Score=18.44 Aligned_cols=70 Identities=30% Similarity=0.495 Sum_probs=40.0
Q ss_pred CCCHHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 22011012444211232398317889863500112465212221520257799875501064411140678999999997
Q gi|254780414|r 138 HGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIK 217 (520)
Q Consensus 138 H~D~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir 217 (520)
|..---.+|+|...+.. .+.+|-++.-. --|+.|||||. |.|-+.++-+--
T Consensus 87 hdeL~~~iP~g~~~l~l--e~~YawlAfls-fsyaaqfhPE~--------------FgiGNVS~V~vd------------ 137 (211)
T pfam01606 87 HDELDFDFPDGVQLLTS--ESIYAWLAFLS-FSYAAQFHPEM--------------FGIGNVSAVHVD------------ 137 (211)
T ss_pred CCCCCCCCCCCHHHCCH--HHHHHHHHHHH-HHHHHHHCHHH--------------HCCCCEEEEEEE------------
T ss_conf 20007538974001001--44899999998-88888609566--------------145765699991------------
Q ss_pred HHHCCCCEEEEECCCCHHHHHH
Q ss_conf 6504440366405640477999
Q gi|254780414|r 218 EQVGNERVICAVSGGVDSTVAA 239 (520)
Q Consensus 218 ~~vg~~kVi~~lSGGVDStV~A 239 (520)
...+-||+.--|-.||+..
T Consensus 138 ---~~hq~iCa~hdg~NsT~~~ 156 (211)
T pfam01606 138 ---IKHQFICAVHDGDNSTLIE 156 (211)
T ss_pred ---CCCCEEEEEECCCCCCCCC
T ss_conf ---3640898860677776655
No 384
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=29.97 E-value=38 Score=14.16 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 64411140678999999997650444036640564047799999986223656999973895515627899998862
Q gi|254780414|r 198 GIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG 274 (520)
Q Consensus 198 ~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~ 274 (520)
|+..+|+-.. +.+.++++.+.+....+.+|.-.+... -+..+ ...|-++.++=.|.+|||.. .++..+.||+
T Consensus 185 G~~g~~~~pe-v~~ai~~v~~~~~~~gk~~G~~~~~~~-~a~~~--~~~G~~~i~~g~D~~~L~~a-~~~~~~~~kk 256 (256)
T PRK10558 185 GHLGNASHPD-VQKAIQHIFARAKAHGKPSGILAPVEA-DARRY--LEWGATFVAVGSDLGVFRSA-TQKLADTFKK 256 (256)
T ss_pred CCCCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCHH-HHHHH--HHCCCCEEEEHHHHHHHHHH-HHHHHHHHCC
T ss_conf 9999999979-999999999999985998799369999-99999--97699899972799999999-9999998509
No 385
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=29.89 E-value=38 Score=14.15 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred HHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHH-HHHHHHHCCC
Q ss_conf 89426888983111221000367899999999999-9999986465
Q gi|254780414|r 391 SFVERHPCPGPGLAIRCIGEITEERINILRESDAI-YREEIHKAGI 435 (520)
Q Consensus 391 ~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad~i-~~~~l~~~~l 435 (520)
.+..+-| =+|--|-++|-.-+-..|=+|++-++ +++.|++.|.
T Consensus 301 ~i~~~~~--l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga 344 (414)
T COG1004 301 KILNHLG--LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGA 344 (414)
T ss_pred HHHHHCC--CCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9998468--7786799998741699842000317999999997799
No 386
>pfam09075 STb_secrete Heat-stable enterotoxin B, secretory. Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide crosslinked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells.
Probab=29.88 E-value=13 Score=17.40 Aligned_cols=16 Identities=44% Similarity=0.889 Sum_probs=11.3
Q ss_pred EEEECHHHHHHHHHCC
Q ss_conf 8997789999899709
Q gi|254780414|r 82 LLGICYGQQIMCQSLG 97 (520)
Q Consensus 82 ILGICyG~QlLa~~~G 97 (520)
.-|-|+|.|+|..+-|
T Consensus 32 tagacfgaqimvaakg 47 (48)
T pfam09075 32 TAGACFGAQIMVAAKG 47 (48)
T ss_pred CCCCCCCHHHHEECCC
T ss_conf 7412204344120046
No 387
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=29.75 E-value=38 Score=14.14 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=10.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 3664056404779999998622365
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGIN 249 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~ 249 (520)
.|.|.||.|-|+++..|+.+-+-+.
T Consensus 4 ~IiGAaG~VG~~~a~~l~~~~~~~e 28 (309)
T cd05294 4 SIIGASGRVGSATALLLAKEDVVKE 28 (309)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCE
T ss_conf 9999997699999999983799875
No 388
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=29.66 E-value=38 Score=14.13 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 705788998888659406985289898-------899723997999985388999999975376898089988997
Q gi|254780414|r 17 SQFTQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 17 SQytqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
+|..+-|....++.|....+...+.+. +.+...+++|+|+++... +.+.........++|+.-+
T Consensus 15 ~~l~~gi~~~~~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDGiIi~~~~~-----~~~~~~~~~~~~~iPvV~i 85 (269)
T cd06275 15 AEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEY-----DQPLLAMLERYRHIPMVVM 85 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999998699899996899989999999999956999999936889-----8378999998289988998
No 389
>PRK08639 threonine dehydratase; Validated
Probab=29.64 E-value=38 Score=14.12 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=11.8
Q ss_pred HCCCCEEEEECCC-CHHHHHHHHHHHHC
Q ss_conf 0444036640564-04779999998622
Q gi|254780414|r 220 VGNERVICAVSGG-VDSTVAAFLIYEAI 246 (520)
Q Consensus 220 vg~~kVi~~lSGG-VDStV~A~Ll~kAi 246 (520)
..+++|+|-+||| +|.+...-.+-|++
T Consensus 301 ~~gk~Vv~ilsGgNiD~~~l~~i~er~l 328 (418)
T PRK08639 301 IKGKTVVCVISGGNNDIERMPEIKERSL 328 (418)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2698099998158889889999999987
No 390
>PRK06756 flavodoxin; Provisional
Probab=29.46 E-value=38 Score=14.10 Aligned_cols=46 Identities=30% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCEEEEECC-CCC-HHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf 78899888865940698528-989-889972399799998538899999997
Q gi|254780414|r 20 TQLIARRVRESKVYCEVIAF-KNA-LDYFKEQNPQAIILSGSPASSLDIDSP 69 (520)
Q Consensus 20 tqLIaRriRelgVyseI~P~-~~~-~e~i~~~~p~GIILSGGP~SV~d~~ap 69 (520)
...|++-+++.|+-.+++.. +.. .+.+. +++++|| |.|. -.+...|
T Consensus 9 A~~Ia~g~~~~G~~V~~~~~~~~~~~~~l~--~~d~~il-GspT-~g~g~lp 56 (138)
T PRK06756 9 ADHIAGVIRETENEIEVIDIMDSPEASILE--QYDGIIL-GAYT-WGDGDLP 56 (138)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCHHHHH--HCCEEEE-ECCC-CCCCCCC
T ss_conf 999999999769907999702677376897--5897999-8887-6878377
No 391
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=29.39 E-value=25 Score=15.42 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=6.3
Q ss_pred CCCCEEEEEEEEH
Q ss_conf 3500112465212
Q gi|254780414|r 166 EKRKYYAVQFHPE 178 (520)
Q Consensus 166 ~~~~iyGVQFHPE 178 (520)
.++++.++--||-
T Consensus 70 ~g~~~tC~V~H~s 82 (95)
T cd05719 70 NGKELTCVVSHPT 82 (95)
T ss_pred CCCEEEEEEECCC
T ss_conf 8967189986887
No 392
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.38 E-value=38 Score=14.10 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=24.5
Q ss_pred CHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHH
Q ss_conf 98899723997999985388999999975376898089988997789
Q gi|254780414|r 42 ALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYG 88 (520)
Q Consensus 42 ~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG 88 (520)
+++++.+ +++-+|-=||-.. -.+........++|||||-.|
T Consensus 35 ~~~e~~~-~~Dlii~iGGDGT-----~L~a~r~~~~~~iPilGiN~G 75 (272)
T PRK02231 35 SLEEIGQ-RAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred CHHHHCC-CCCEEEEECCCHH-----HHHHHHHHHCCCCCEEEECCC
T ss_conf 9889701-7789999787589-----999999860059978965378
No 393
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=29.22 E-value=39 Score=14.08 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf 064411140678999999997650444036640564047799999986223656999973895515627899998862
Q gi|254780414|r 197 AGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG 274 (520)
Q Consensus 197 c~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~ 274 (520)
.|...+|+-.. +.+.++++.+.+....+.+|.-.+-... +. -....|-++.++=.|.+|||.. .+...+.||+
T Consensus 177 lG~~g~~~~p~-v~~ai~~v~~~~~~~gk~~Gi~~~~~~~-~~--~~~~~G~~~i~~g~D~~~l~~a-a~~~~~~fkk 249 (249)
T TIGR03239 177 LGHLGNPNHPD-VQKAIRHIFDRAAAHGKPCGILAPVEAD-AR--RYLEWGATFVAVGSDLGVFRSA-TQALRDKFKK 249 (249)
T ss_pred CCCCCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCHHH-HH--HHHHCCCCEEEEHHHHHHHHHH-HHHHHHHHCC
T ss_conf 69999999979-9999999999999859966982799999-99--9998699899966899999999-9999998449
No 394
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.16 E-value=39 Score=14.07 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=42.7
Q ss_pred EEEEECCCCH----HHHHHHHHHHCCCEEEEECCCCCHH-------HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9999889705----7889988886594069852898988-------9972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQF----TQLIARRVRESKVYCEVIAFKNALD-------YFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQy----tqLIaRriRelgVyseI~P~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
++|=|+...| .+-|-+..++.|+...|...+.+.+ .+...+++|||+++... +. .....+.+.
T Consensus 4 vivp~l~n~f~~~l~~~i~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~-----~~-~~~~~l~~~ 77 (265)
T cd06285 4 VLVPRLTDTVMATMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARS-----DD-HFLDELTRR 77 (265)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCC-----CH-HHHHHHHHC
T ss_conf 997798778999999999999998699899997999989999999999956999999768879-----98-999999967
Q ss_pred CCCEEEE
Q ss_conf 9988997
Q gi|254780414|r 79 NIPLLGI 85 (520)
Q Consensus 79 ~iPILGI 85 (520)
++|+.-+
T Consensus 78 ~iPvV~~ 84 (265)
T cd06285 78 GVPFVLV 84 (265)
T ss_pred CCCEEEE
T ss_conf 9978998
No 395
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.04 E-value=39 Score=14.06 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHHHHC
Q ss_conf 65899999999743997099864----62202454202
Q gi|254780414|r 308 QLFIEVFEEEAKKIGGAQFLGQG----TLYPDVIESIS 341 (520)
Q Consensus 308 ~~Fi~vf~~~a~~~~~~~~L~QG----TlypDvIES~~ 341 (520)
+.|.+-|.+.-.+.+ ..|-+++ .++-+=||.++
T Consensus 257 ~~F~~~y~~~~g~~P-~~~aa~aYDA~~lla~Aie~Ag 293 (312)
T cd06346 257 EAFTSAYKAAYGESP-SAFADQSYDAAALLALAYQGAS 293 (312)
T ss_pred HHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999878799-6207999999999999998768
No 396
>pfam06611 DUF1145 Protein of unknown function (DUF1145). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=29.01 E-value=20 Score=16.12 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=8.2
Q ss_pred CCCCCC-CCEEEECC
Q ss_conf 888983-11122100
Q gi|254780414|r 396 HPCPGP-GLAIRCIG 409 (520)
Q Consensus 396 hPFPGP-GLaiRi~g 409 (520)
|||||| ++.+.+.+
T Consensus 23 ~Pfp~pl~~~l~i~~ 37 (61)
T pfam06611 23 MPFPGPLAILLNIAG 37 (61)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 689842678999999
No 397
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=28.83 E-value=39 Score=14.03 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHH-----HHHHHHHHHCCCCEEEEEECC
Q ss_conf 57799875501064--4111406789999999976504440366405640477-----999999862236569999738
Q gi|254780414|r 186 SQLIDNFVHHVAGI--QDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDST-----VAAFLIYEAIGINLTCVLVDH 257 (520)
Q Consensus 186 ~~iL~NFl~~Ic~~--~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDSt-----V~A~Ll~kAig~~l~~vfVD~ 257 (520)
..-+++++-.|-.. ...=.+..=+...++.+++.-...++|+.||=|.|.+ ..++=+.+.-|-++++|-|-.
T Consensus 64 ~~~~~~~l~~i~~~~~~ggT~i~~al~~a~~~l~~~~~~~~~ivLlTDG~~n~g~~~~~~~~~~a~~~gi~v~tIGvG~ 142 (180)
T cd01467 64 RESLKELLEDIKIGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEEECC
T ss_conf 8999999862244532368608999999999764247666379998058866787699999999997699899999778
No 398
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=28.69 E-value=31 Score=14.72 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=8.8
Q ss_pred CCCCEEEECCCCCC
Q ss_conf 39979999853889
Q gi|254780414|r 49 QNPQAIILSGSPAS 62 (520)
Q Consensus 49 ~~p~GIILSGGP~S 62 (520)
.+|++||+.|+|+|
T Consensus 10 ~~Pkai~laG~pGA 23 (191)
T pfam06414 10 ERPVAVLLGGQPGA 23 (191)
T ss_pred CCCEEEEEECCCCC
T ss_conf 69879999579988
No 399
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.47 E-value=40 Score=13.99 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=49.0
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCC---HHHHHHCC-----------------CCEEEECCCC
Q ss_conf 986344886999988970578899888865940698528989---88997239-----------------9799998538
Q gi|254780414|r 1 MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNA---LDYFKEQN-----------------PQAIILSGSP 60 (520)
Q Consensus 1 m~~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~---~e~i~~~~-----------------p~GIILSGGP 60 (520)
|-...+..+|+|+=+|- -..-.||-+.+.|....+...... .+.+.... .+-||.|.|=
T Consensus 1 ~~~~~~~k~vlV~GlG~-sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI 79 (501)
T PRK02006 1 MFGDRQRPMVLVLGLGE-SGLAMARWCARHGCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGL 79 (501)
T ss_pred CCCCCCCCEEEEEEECH-HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEE
T ss_conf 97666898399983368-89999999997898499998999986199998608981897788986784689999989900
Q ss_pred CCCCCCCCCCCCH---HHHHCCCCEEE-ECHHHHHHH
Q ss_conf 8999999975376---89808998899-778999989
Q gi|254780414|r 61 ASSLDIDSPQIPK---EILESNIPLLG-ICYGQQIMC 93 (520)
Q Consensus 61 ~SV~d~~ap~~~~---~I~~~~iPILG-ICyG~QlLa 93 (520)
.++.|...+ ..-+.++||++ |=+..|.+.
T Consensus 80 ----~p~~p~~~~~l~~A~~~gi~i~~eiel~~~~~~ 112 (501)
T PRK02006 80 ----SPLEPALAALLAAARERGIPVWGELELFAQALA 112 (501)
T ss_pred ----CCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHH
T ss_conf ----888854319999999879958768999998876
No 400
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=28.47 E-value=40 Score=13.99 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=40.4
Q ss_pred ECCCCHHHH----HHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCE
Q ss_conf 889705788----998888659406985289898-------899723997999985388999999975376898089988
Q gi|254780414|r 14 DFGSQFTQL----IARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPL 82 (520)
Q Consensus 14 DfGSQytqL----IaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPI 82 (520)
|.-+-|... |.+..++.|+...+.+.+.+. +.+...+++|||+.+... ..+.....+.+.++|+
T Consensus 8 ~~~~~f~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~-----~~~~~~~~~~~~~ipv 82 (264)
T cd01537 8 DLDNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL-----TAPTIVKLARKAGIPV 82 (264)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----CCHHHHHHHHHCCCCE
T ss_conf 89779999999999999998699899997999989999999999976999999967988-----8689999999759979
Q ss_pred EEE
Q ss_conf 997
Q gi|254780414|r 83 LGI 85 (520)
Q Consensus 83 LGI 85 (520)
.-+
T Consensus 83 V~~ 85 (264)
T cd01537 83 VLV 85 (264)
T ss_pred EEE
T ss_conf 998
No 401
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.22 E-value=40 Score=13.96 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=40.5
Q ss_pred EEEEECCCCH----HHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9999889705----788998888659406985289898-------89972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQF----TQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQy----tqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
|+|=|....| .+-|.+..++.|....+...+.+. +.+...+++|||++.+. +..+.....+-+.
T Consensus 4 vivp~i~npff~~~~~gi~~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiIi~~~~-----~~~~~~~~~~~~~ 78 (269)
T cd06281 4 CLVSDITNPLLAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD-----ERDPELVDALASL 78 (269)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC-----CCCHHHHHHHHHC
T ss_conf 99889878999999999999999869989999689998999999999985799899976777-----7999999999847
Q ss_pred CCCEEE
Q ss_conf 998899
Q gi|254780414|r 79 NIPLLG 84 (520)
Q Consensus 79 ~iPILG 84 (520)
++|+.-
T Consensus 79 ~iPvV~ 84 (269)
T cd06281 79 DLPIVL 84 (269)
T ss_pred CCCEEE
T ss_conf 998899
No 402
>pfam03530 SK_channel Calcium-activated SK potassium channel.
Probab=28.10 E-value=22 Score=15.87 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=7.7
Q ss_pred HHCCCCCCCCCC
Q ss_conf 942688898311
Q gi|254780414|r 392 FVERHPCPGPGL 403 (520)
Q Consensus 392 ~~~RhPFPGPGL 403 (520)
+-.=|||||++.
T Consensus 105 vC~IhP~Pg~~~ 116 (120)
T pfam03530 105 VCAIHPIPGTYI 116 (120)
T ss_pred HHCCCCCCCCEE
T ss_conf 841068996278
No 403
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.00 E-value=40 Score=13.93 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=40.5
Q ss_pred EEEEECCCCHH----HHHHHHHHHCCCEEEEECCCCCH------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 99998897057----88998888659406985289898------899723997999985388999999975376898089
Q gi|254780414|r 10 VLIIDFGSQFT----QLIARRVRESKVYCEVIAFKNAL------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESN 79 (520)
Q Consensus 10 IlIlDfGSQyt----qLIaRriRelgVyseI~P~~~~~------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~ 79 (520)
++|=|+...|- +-|.+..++.|....+...+.+. +.+...+++|||+.++.. .......+.+.+
T Consensus 4 vivp~i~npff~~i~~gie~~~~~~gy~~ll~~~~~~~~~e~~l~~l~~~~vDGiIi~~~~~------~~~~~~~~~~~~ 77 (266)
T cd06278 4 VVVADLDNPFYSELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTL------SSELAEECRRNG 77 (266)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHCC
T ss_conf 99799876999999999999999869999999799988999999999955999999948989------999999999769
Q ss_pred CCEEEE
Q ss_conf 988997
Q gi|254780414|r 80 IPLLGI 85 (520)
Q Consensus 80 iPILGI 85 (520)
+|+.-+
T Consensus 78 iPvV~i 83 (266)
T cd06278 78 IPVVLI 83 (266)
T ss_pred CCEEEE
T ss_conf 989997
No 404
>KOG3395 consensus
Probab=27.92 E-value=30 Score=14.83 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=15.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 999996689888999988756589
Q gi|254780414|r 288 RFIRKLKNIVDPETKRKVIGQLFI 311 (520)
Q Consensus 288 ~Fl~~L~gv~DPE~KRkiIG~~Fi 311 (520)
+.--.|.|+ ||+|||.|-++|-
T Consensus 29 ~~~v~~~~~--PdqKRK~i~E~~T 50 (246)
T KOG3395 29 EVDVLLHGT--PDQKRKLIRECLT 50 (246)
T ss_pred HHHHHHHCC--CHHHHHHHHHHHC
T ss_conf 888986079--2777889999861
No 405
>PRK04759 consensus
Probab=27.82 E-value=41 Score=13.91 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=47.2
Q ss_pred CCCCCCCCEEEEEE-CCC----CHHHHHHHHHHHCCCEEEEEC----------CC--CCHHHHHHCCCCEEEECCCCCCC
Q ss_conf 98634488699998-897----057889988886594069852----------89--89889972399799998538899
Q gi|254780414|r 1 MHKRERSSKVLIID-FGS----QFTQLIARRVRESKVYCEVIA----------FK--NALDYFKEQNPQAIILSGSPASS 63 (520)
Q Consensus 1 m~~~~~~~~IlIlD-fGS----QytqLIaRriRelgVyseI~P----------~~--~~~e~i~~~~p~GIILSGGP~SV 63 (520)
|++. -.+|+|+- ..+ +..+-|++.+.+.|+.+-+-+ .+ .+.+++ ..+.+-+|--||-.+.
T Consensus 1 M~~~--f~~I~Iv~k~~~~~~~~~~~~l~~~L~~~g~~v~vd~~~~~~l~~~~~~~~~~~~~l-~~~~Dlvi~lGGDGTl 77 (294)
T PRK04759 1 MKKP--FNVIAIIGKPRDQQAIQTHKELYHWLTSLGYTVFIDDRLAAILTDVPQEHFASLVEL-GKKADLAIVVGGDGNM 77 (294)
T ss_pred CCCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCHHHC-CCCCCEEEEECCCHHH
T ss_conf 9999--979999941799799999999999998689999991688655334772223775563-7665689998478589
Q ss_pred CCCCCCCCCHHHHHCCCCEEEECHHH-------------HHHHHHCCCE
Q ss_conf 99999753768980899889977899-------------9989970969
Q gi|254780414|r 64 LDIDSPQIPKEILESNIPLLGICYGQ-------------QIMCQSLGGK 99 (520)
Q Consensus 64 ~d~~ap~~~~~I~~~~iPILGICyG~-------------QlLa~~~GG~ 99 (520)
.+....+...++|||||-+|. |.|...+-|+
T Consensus 78 -----L~aar~~~~~~~PilgiN~G~lGFLt~~~~~~~~~~l~~il~g~ 121 (294)
T PRK04759 78 -----LGAARVLSRFDISVIGVNRGNLGFLTDLNPEDFQERLQAVLDGE 121 (294)
T ss_pred -----HHHHHHHCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf -----99999860169968988458646741468889999999997599
No 406
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=27.66 E-value=17 Score=16.69 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCH-HHHCCCCCCCCC
Q ss_conf 3789873899999999819998-894268889831
Q gi|254780414|r 369 EPLKELFKDEVRLLGKELRLPD-SFVERHPCPGPG 402 (520)
Q Consensus 369 EPl~~l~KdEVR~lg~~Lglp~-~~~~RhPFPGPG 402 (520)
|-+.+..+++..+++..-+-|. --++|++.--|=
T Consensus 359 ee~~~~~l~~L~~~~~~~~~~~~~~v~r~~~~~Pq 393 (444)
T COG1232 359 EELVAAVLDDLKKLGGINGDPVFVEVTRWKYAMPQ 393 (444)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCC
T ss_conf 99999999999997386766153244322466775
No 407
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases; InterPro: IPR005958 This entry describes tyrosine aminotransferase (2.6.1.5 from EC) as found in animals and Trypanosoma cruzi (Euglenozoa). It is the first enzyme of a pathway of tyrosine degradation via homogentisate. L-tyrosine + 2-oxoglutarate = 4-hydroxyphenylpyruvate + L-glutamate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway are included in this family. ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding, 0006519 amino acid and derivative metabolic process.
Probab=27.54 E-value=41 Score=13.88 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=11.7
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 979999853889999999753768980899889
Q gi|254780414|r 51 PQAIILSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 51 p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
|+.++++| .|+++|.+.-.-|...+|||
T Consensus 226 Y~~~Vf~d-----kDPn~~F~p~a~f~~~VPvl 253 (424)
T TIGR01265 226 YGHLVFGD-----KDPNAPFVPMASFASIVPVL 253 (424)
T ss_pred CCCCCCCC-----CCCCCCCCCCCCCCCCCCEE
T ss_conf 16414488-----97888622300357868868
No 408
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=27.49 E-value=41 Score=13.87 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Q ss_conf 6789999999976504440366405640477999
Q gi|254780414|r 206 SSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAA 239 (520)
Q Consensus 206 ~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A 239 (520)
+.|+.+.++.|.+ .|-+=|+| .+|||--..-
T Consensus 116 ~~~l~~~v~~I~~-~g~nVVl~--~k~I~d~A~~ 146 (261)
T cd03334 116 KEYLKNLVSRIVA-LRPDVILV--EKSVSRIAQD 146 (261)
T ss_pred HHHHHHHHHHHHH-HCCCEEEE--CCCCCHHHHH
T ss_conf 9999999999996-09999998--8977989999
No 409
>PRK11761 cysM cysteine synthase B; Provisional
Probab=27.45 E-value=41 Score=13.87 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=39.3
Q ss_pred HHCCCCCCCCCHHHHHHH-HHHHHH--HHCCC-CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHH
Q ss_conf 010644111406789999-999976--50444-03664056404779999998622365699997389551562789999
Q gi|254780414|r 195 HVAGIQDNWVMSSYHKEI-VSRIKE--QVGNE-RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIIS 270 (520)
Q Consensus 195 ~Ic~~~~~W~~~~~~~~~-i~~Ir~--~vg~~-kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~ 270 (520)
+.=.+.++++.++..-.. +....+ ++..+ .|+++=||---.++| +.-+..|-+++++. -.+-+.+-.+
T Consensus 32 K~E~~nptGS~KdR~A~~~i~~a~~~G~l~~g~~vveaSSGN~g~alA--~~a~~~G~~~~iv~------p~~~s~~k~~ 103 (296)
T PRK11761 32 KLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALA--MAAAIKGYRMKLIM------PENMSQERRA 103 (296)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH--HHHHHCCCEEEEEC------CCCCCHHHHH
T ss_conf 862579745829999999999999749989998799937886799999--99998197479967------8657889999
Q ss_pred HHHHCCCCCEEEEEHH
Q ss_conf 8862369857997588
Q gi|254780414|r 271 LFKGYPNFPLRVVDAS 286 (520)
Q Consensus 271 ~~~~~~~~~l~~vda~ 286 (520)
.++. +|-+++.++..
T Consensus 104 ~l~~-~GAeVi~~~~~ 118 (296)
T PRK11761 104 AMRA-YGAELILVPKE 118 (296)
T ss_pred HHHH-CCCCEEEECCC
T ss_conf 9997-49955741777
No 410
>KOG0628 consensus
Probab=27.43 E-value=41 Score=13.86 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=57.4
Q ss_pred EEEEEECCCCEE-EEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Q ss_conf 788986350011-2465212221520257799875501064411140678999999997650444036640564047799
Q gi|254780414|r 160 FAFIADEKRKYY-AVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVA 238 (520)
Q Consensus 160 iaai~~~~~~iy-GVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~ 238 (520)
|+-++.+.+.+- -=|=|||... ..++.+|+- =|+.. ....+++- -.++.=| +=.+-+.-++..-
T Consensus 154 vallaaR~~~i~~~k~~~p~~~e----~~~~~~lV~---Y~SDq------ahssveka-~~i~~Vk-lR~l~td~n~~mr 218 (511)
T KOG0628 154 VALLAARTEKIEEIKSRPPELHE----SSVLARLVA---YCSDQ------AHSSVEKA-CLIAGVK-LRALPTDENFGMR 218 (511)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHEE---EECCC------CCCHHHHH-HHHCCEE-EEEEECCCCCCCC
T ss_conf 99999999999986328976440----556534248---82476------41268876-7440026-8885136676778
Q ss_pred HHHHHHHCCC----CEEEEEE-----CCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHH
Q ss_conf 9999862236----5699997-----38955156278999988623698579975889
Q gi|254780414|r 239 AFLIYEAIGI----NLTCVLV-----DHGFMRKNEVENIISLFKGYPNFPLRVVDASE 287 (520)
Q Consensus 239 A~Ll~kAig~----~l~~vfV-----D~GllRknE~~~v~~~~~~~~~~~l~~vda~~ 287 (520)
...|++||-+ -|+.+|| -+|----++-+++-..-+++ |+=| +|||+=
T Consensus 219 ~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~-glWL-HVDAAY 274 (511)
T KOG0628 219 GDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCREE-GLWL-HVDAAY 274 (511)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCHHHHC-CEEE-EEEHHH
T ss_conf 7999999999986798657999840576555554187741035226-8789-963453
No 411
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=27.31 E-value=42 Score=13.85 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHCC----CCEEEEECCCCHHHHH
Q ss_conf 7899999999765044----4036640564047799
Q gi|254780414|r 207 SYHKEIVSRIKEQVGN----ERVICAVSGGVDSTVA 238 (520)
Q Consensus 207 ~~~~~~i~~Ir~~vg~----~kVi~~lSGGVDStV~ 238 (520)
.-.++.+.++-+.+|= ++-.-.||||----|+
T Consensus 103 ~~~~~~~~~~L~~vgL~~~~~~~p~~LSGGqkQRVa 138 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVG 138 (255)
T ss_pred HHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHH
T ss_conf 899999999999769902441893349999999999
No 412
>pfam11186 DUF2972 Protein of unknown function (DUF2972). Some members in this family of proteins with unknown function are annotated as sugar transferase proteins, however this cannot be confirmed.
Probab=27.27 E-value=42 Score=13.84 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=33.7
Q ss_pred EHHHHHHHHHCCCCCHHHHH--------------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHC
Q ss_conf 58899999966898889999--------------88756589999999974399709986462202454202
Q gi|254780414|r 284 DASERFIRKLKNIVDPETKR--------------KVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESIS 341 (520)
Q Consensus 284 da~~~Fl~~L~gv~DPE~KR--------------kiIG~~Fi~vf~~~a~~~~~~~~L~QGTlypDvIES~~ 341 (520)
+.=..|+.+|+...+-|+++ |-+...|=.+++++..-++ .-+||+|+|=.
T Consensus 121 ~YL~~fi~~L~~~~~~e~~k~~~E~DvL~ylk~nk~l~~kfK~ilD~eL~~IK--------q~RPDIVaSWK 184 (197)
T pfam11186 121 KYLKKFIEALEKQVKIEESKKLKEKDVLEYLKENKQLRLKFKNILDKELQYIK--------QHRPDIVASWK 184 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--------HHCCCHHHHHH
T ss_conf 99999999999999899983299999999998698999999999999999998--------72986877868
No 413
>PRK04804 minC septum formation inhibitor; Reviewed
Probab=27.22 E-value=42 Score=13.84 Aligned_cols=110 Identities=18% Similarity=0.268 Sum_probs=60.0
Q ss_pred CCHHHHHCCCCEEEECHH----HHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH--C
Q ss_conf 376898089988997789----9998997096999869866103667523886222787266553368600220110--1
Q gi|254780414|r 71 IPKEILESNIPLLGICYG----QQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--H 144 (520)
Q Consensus 71 ~~~~I~~~~iPILGICyG----~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~--~ 144 (520)
+...+.+.+....||+-+ ++..+...|-.+.......- ..+.. .....+.++- ..+.++|+-.++|-|. .
T Consensus 63 L~~~l~~~gl~~vgi~g~~~~~~~~~a~~~gl~~~~~~~~~~-~~~~~-~~pt~ii~~p--VRSGQqVya~~gDLvVlg~ 138 (220)
T PRK04804 63 LKQGISQAGMIPVGITGCKDKRKQNLASEAGFAIMTATKSPV-QAPAK-MAPTKVVRTP--IRSGQQIYAKDGDLVILNH 138 (220)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCC-CCCCEEEECC--CCCCCEEEECCCCEEEECC
T ss_conf 999999879979999668807768888747875456776767-89887-8884698067--4588789956999899824
Q ss_pred CCCCCCEEECCCCCCEEEEE---------ECCCCEEEEEEEEHHHCCCHH
Q ss_conf 24442112323983178898---------635001124652122215202
Q gi|254780414|r 145 IPEGFEVIASSDSTPFAFIA---------DEKRKYYAVQFHPEVVHTVGG 185 (520)
Q Consensus 145 lP~gf~viA~S~~~~iaai~---------~~~~~iyGVQFHPEV~hT~~G 185 (520)
+.+|.+++|.-+-..+..++ +.+-.||+-+|.||.. |-.|
T Consensus 139 Vs~GAEViAdGnIhVyG~LRGrA~AGa~Gd~~ArIFc~~l~aELv-sIaG 187 (220)
T PRK04804 139 VSAGAEVIADGSIHIHGTLRGRAIAGASGQKEARIICHDLQAELI-SIAG 187 (220)
T ss_pred CCCCCEEEECCCEEEEEEECCEEEECCCCCCCCEEEECCCCCEEE-EEEE
T ss_conf 699978993898999987044497257899740899501880348-8960
No 414
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=26.88 E-value=14 Score=17.14 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=23.3
Q ss_pred EEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHH
Q ss_conf 99998538899999997537689808998899778999989
Q gi|254780414|r 53 AIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMC 93 (520)
Q Consensus 53 GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa 93 (520)
||+-||||......-.-.+-......+.-++||-+|.+=|.
T Consensus 4 aIltsGG~~pGmNa~ir~vv~~a~~~g~~v~Gi~~G~~GL~ 44 (338)
T cd00363 4 GVLTSGGDAPGMNAAIRGVVRSAIAEGLEVYGIYEGYAGLV 44 (338)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHC
T ss_conf 99868888668889999999999977999999825777770
No 415
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=26.83 E-value=42 Score=13.79 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=31.5
Q ss_pred EEEEEECCCC-------HHHHHHHHHHHCCCEEEEECCC----CC-------HHHHHHCCCCEEEECCCC
Q ss_conf 6999988970-------5788998888659406985289----89-------889972399799998538
Q gi|254780414|r 9 KVLIIDFGSQ-------FTQLIARRVRESKVYCEVIAFK----NA-------LDYFKEQNPQAIILSGSP 60 (520)
Q Consensus 9 ~IlIlDfGSQ-------ytqLIaRriRelgVyseI~P~~----~~-------~e~i~~~~p~GIILSGGP 60 (520)
||.++==|.| +..-+..|..||||--+|..+. .+ ++.....+|++|||+.-+
T Consensus 1 ~ia~~~Pg~~~sdfW~~~~~g~e~~a~eLGI~~ei~~~~~~~~~D~~~Q~~~le~~i~~~~D~Ii~tp~~ 70 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDS 70 (280)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9579847987445899999999999998499869988147887479999999999985379989991680
No 416
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=26.79 E-value=42 Score=13.79 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=42.8
Q ss_pred EEEEECCC----CHHHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 99998897----05788998888659406985289898-------89972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGS----QFTQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGS----QytqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
++|=|+.. +..+-|.+..++.|+...|...+.+. +.+...+++|||+.+.-++..+++ ...-..+-+.
T Consensus 4 vivp~l~n~ff~~~~~gi~~~~~~~gy~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~-~~~~~~l~~~ 82 (273)
T cd01541 4 VITTYISDYIFPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPN-IDLYLKLEKL 82 (273)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-HHHHHHHHHC
T ss_conf 995887657999999999999998699899997899989999999999965999899925310357877-7999999976
Q ss_pred CCCEEEEC
Q ss_conf 99889977
Q gi|254780414|r 79 NIPLLGIC 86 (520)
Q Consensus 79 ~iPILGIC 86 (520)
++|+.-|.
T Consensus 83 ~iPvV~i~ 90 (273)
T cd01541 83 GIPYVFIN 90 (273)
T ss_pred CCCEEEEE
T ss_conf 99899995
No 417
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.69 E-value=43 Score=13.77 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCHH-------HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 7057889988886594069852898988-------99723997999985388999999975376898089988997
Q gi|254780414|r 17 SQFTQLIARRVRESKVYCEVIAFKNALD-------YFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 17 SQytqLIaRriRelgVyseI~P~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
++..+-|.+..++.|....+...+.+.+ .+...+++|||+.|... +.....+.+.++|+.-+
T Consensus 18 ~~l~~gie~~~~~~Gy~lll~~~~~~~~~e~~~~~~l~~~~vdGiI~~~~~~-------~~~~~~l~~~~~P~V~i 86 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIS-------TEYIKEIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC-------HHHHHHHHHCCCCEEEE
T ss_conf 9999999999998499899993899989999999999948987899978999-------79999999759989996
No 418
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=26.53 E-value=43 Score=13.75 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCC
Q ss_conf 999997650444036640564047799999986223-6569999738955
Q gi|254780414|r 212 IVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFM 260 (520)
Q Consensus 212 ~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~Gll 260 (520)
...++...-.+++|++--.+|..|..+|.+|.++ | +++.. +.-|+.
T Consensus 48 ~~~~~~~~~~d~~iv~~C~~G~rS~~aa~~L~~~-G~~~V~~--L~GGi~ 94 (101)
T cd01528 48 RSKELDSDNPDKDIVVLCHHGGRSMQVAQWLLRQ-GFENVYN--LQGGID 94 (101)
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHC-CCCCEEE--ECCHHH
T ss_conf 9997341168980899838981599999999985-9977798--476199
No 419
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=26.43 E-value=43 Score=13.74 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=72.4
Q ss_pred CEEEEEEEEHHHCCCHHHHHHHHHHHHHCCC-CCCCC--C---HHHHHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHH
Q ss_conf 0112465212221520257799875501064-41114--0---6789999999976504440-36640564047799999
Q gi|254780414|r 169 KYYAVQFHPEVVHTVGGSQLIDNFVHHVAGI-QDNWV--M---SSYHKEIVSRIKEQVGNER-VICAVSGGVDSTVAAFL 241 (520)
Q Consensus 169 ~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~-~~~W~--~---~~~~~~~i~~Ir~~vg~~k-Vi~~lSGGVDStV~A~L 241 (520)
-+=||+-| .-+|. +|..||....+- +..|- . -.|+.+.++.||+.||++. |.+-+|+- |
T Consensus 150 GfDgVEIH-----~ahGy-Ll~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~-d------- 215 (353)
T cd02930 150 GYDGVEIM-----GSEGY-LINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSML-D------- 215 (353)
T ss_pred CCCEEEEC-----CCCCH-HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-C-------
T ss_conf 99989962-----56761-4877338754788574579878887999999999999709987499973601-2-------
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH-C--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9862236569999738955156278999988623698579975889999996-6--898889999887565899999999
Q gi|254780414|r 242 IYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKL-K--NIVDPETKRKVIGQLFIEVFEEEA 318 (520)
Q Consensus 242 l~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L-~--gv~DPE~KRkiIG~~Fi~vf~~~a 318 (520)
+++.|+ ...|..++.+.+.+ .|+++..|... +.... . ...-|+ ..|.+ +-+..
T Consensus 216 ------------~~~~G~-~~~e~~~~~~~l~~-~GvD~i~vs~G--~~~~~~~~~~~~~p~-------g~~~~-~a~~i 271 (353)
T cd02930 216 ------------LVEGGS-TWEEVVALAKALEA-AGADILNTGIG--WHEARVPTIATSVPR-------GAFAW-ATAKL 271 (353)
T ss_pred ------------CCCCCC-CHHHHHHHHHHHHH-CCCCEEEECCC--CCCCCCCCCCCCCCC-------HHHHH-HHHHH
T ss_conf ------------689998-99999999999998-19999996377--444668753345772-------36699-99998
Q ss_pred HHCCCCEEEEECCC-CCHHHHHHC
Q ss_conf 74399709986462-202454202
Q gi|254780414|r 319 KKIGGAQFLGQGTL-YPDVIESIS 341 (520)
Q Consensus 319 ~~~~~~~~L~QGTl-ypDvIES~~ 341 (520)
++.-+....+.|-+ .||.+|..-
T Consensus 272 r~~~~~Pvi~~G~i~~p~~ae~~l 295 (353)
T cd02930 272 KRAVDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred HHHCCCCEEECCCCCCHHHHHHHH
T ss_conf 875483489659979899999999
No 420
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=26.42 E-value=43 Score=13.74 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 44886999988970578899888865940698
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEV 36 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI 36 (520)
.++.+|+|+-||||= |-=|..+|+-|+...|
T Consensus 15 lk~k~iaViGYGsQG-~AhAlNLrDSG~~V~v 45 (336)
T PRK05479 15 IKGKKVAIIGYGSQG-HAHALNLRDSGVDVVV 45 (336)
T ss_pred HCCCEEEEECCCCHH-HHHHHHHHHCCCCEEE
T ss_conf 779979997527076-8988553744997799
No 421
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=26.08 E-value=44 Score=13.70 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=27.0
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHH--CCCCEEEECHHHHHHHHHCCCE
Q ss_conf 979999853889999999753768980--8998899778999989970969
Q gi|254780414|r 51 PQAIILSGSPASSLDIDSPQIPKEILE--SNIPLLGICYGQQIMCQSLGGK 99 (520)
Q Consensus 51 p~GIILSGGP~SV~d~~ap~~~~~I~~--~~iPILGICyG~QlLa~~~GG~ 99 (520)
.+-||.+= .++|.-..-+++++ -+..|++-=.+.|.|-..+.-.
T Consensus 73 iDYIi~~H-----~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L~~~~~~~ 118 (388)
T COG0426 73 IDYIIVNH-----TEPDHSGSLPELLELAPNAKIICSKLAARFLKGFYHDP 118 (388)
T ss_pred CEEEEECC-----CCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCC
T ss_conf 71999788-----89633546999998688978996389999999744885
No 422
>pfam03575 Peptidase_S51 Peptidase family S51.
Probab=25.92 E-value=44 Score=13.68 Aligned_cols=75 Identities=9% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCC-CCHHHHHH--CCCCEEEECCCCCCC-----CCCCCCCCCHHHHHCCCCEEEECHHHH
Q ss_conf 5788998888659406985289-89889972--399799998538899-----999997537689808998899778999
Q gi|254780414|r 19 FTQLIARRVRESKVYCEVIAFK-NALDYFKE--QNPQAIILSGSPASS-----LDIDSPQIPKEILESNIPLLGICYGQQ 90 (520)
Q Consensus 19 ytqLIaRriRelgVyseI~P~~-~~~e~i~~--~~p~GIILSGGP~SV-----~d~~ap~~~~~I~~~~iPILGICyG~Q 90 (520)
|+.....+.+.+|.....++.. .+.+++.+ .+-++|.++||..-. .+.+....-++.++.++|+.|.-=|.-
T Consensus 1 Yv~~~~~~f~~lg~~v~~l~~~~~~~~~~~~~i~~ad~I~v~GGnt~~ll~~l~~~g~~~~l~~~~~~G~~~~G~SAGa~ 80 (154)
T pfam03575 1 YVEKFREALEKLGLEVSGLHLFTPSVEDIEAKILKADVIYVGGGNTFHLLKLLRETGLDDIIREAVQAGLPYIGWSAGAN 80 (154)
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 96899999997699778986667974729999985999998987599999999986829999999985977885060466
Q ss_pred HHH
Q ss_conf 989
Q gi|254780414|r 91 IMC 93 (520)
Q Consensus 91 lLa 93 (520)
+.+
T Consensus 81 i~~ 83 (154)
T pfam03575 81 VAG 83 (154)
T ss_pred HCC
T ss_conf 434
No 423
>PRK10116 universal stress protein UspC; Provisional
Probab=25.79 E-value=44 Score=13.66 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=27.1
Q ss_pred CCEEEEECCCCHHHHH---HHHHHHHCCCCEEEEEEC
Q ss_conf 4036640564047799---999986223656999973
Q gi|254780414|r 223 ERVICAVSGGVDSTVA---AFLIYEAIGINLTCVLVD 256 (520)
Q Consensus 223 ~kVi~~lSGGVDStV~---A~Ll~kAig~~l~~vfVD 256 (520)
++++.|+-|-=+|..+ |+-+.|+.|-+++.++|+
T Consensus 4 khILVAvDlS~~S~~~i~kA~~lA~~~~AklslihV~ 40 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLA 40 (142)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 6899994188506999999999999819989999993
No 424
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=25.64 E-value=44 Score=13.64 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 4411140678999999997650444036640564
Q gi|254780414|r 199 IQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGG 232 (520)
Q Consensus 199 ~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGG 232 (520)
...-|..+++--+.++.||++-.+-||++.+.|-
T Consensus 47 F~~~Wd~~~ltP~~V~~~K~~~pnvKV~iSiGG~ 80 (253)
T cd06544 47 FNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGR 80 (253)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 1233046774999999988529980599995687
No 425
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.53 E-value=45 Score=13.63 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=56.5
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHH-------------HHHHHHCCCE--EEE-------CCCC-
Q ss_conf 9979999853889999999753768980899889977899-------------9989970969--998-------6986-
Q gi|254780414|r 50 NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQ-------------QIMCQSLGGK--TKN-------SQSR- 106 (520)
Q Consensus 50 ~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~-------------QlLa~~~GG~--V~~-------~~~~- 106 (520)
+.+-+|--||-.+ -.+....+.+.++|||||-.|. +.|...+-|+ +++ ...+
T Consensus 62 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~iPilGiN~G~lGFL~~~~~~~~~~~l~~i~~g~y~~~~r~~l~~~~~~~~ 136 (290)
T PRK01911 62 DFDMVISIGGDGT-----FLRAAARVGNSGIPILGINTGRLGFLADVSPEEIEETIDELLQGKYTIEERSLLQLTCDPKS 136 (290)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCC
T ss_conf 7779999787689-----99999986125996899944881375036888999999999869978987725999993896
Q ss_pred ----CCCEEEEEECC--CCCCCCCCCCCCCCEEEEEECCCHH-HCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHH
Q ss_conf ----61036675238--8622278726655336860022011-0124442112323983178898635001124652122
Q gi|254780414|r 107 ----EFGRAFIEIKK--NCSLLKGMWEKGSKQQVWMSHGDQV-EHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179 (520)
Q Consensus 107 ----EyG~~~I~i~~--~~~lf~gl~~~~~~~~VwmSH~D~V-~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV 179 (520)
.|.-.++.+.+ ...+.. +.-..+...+....+|.+ ..-|.|-+.-+-|.++||- +++ .-+++.-|=.
T Consensus 137 ~~~~~~ALNevvi~~~~~~~~i~-~~~~id~~~~~~~~~DGlIvsTPTGSTAYslSaGGPIv---~P~--~~~~~ltPI~ 210 (290)
T PRK01911 137 FKDLNYALNEIAVLKRDTSSMIT-IHTYLNGEYLTSYWADGLIIATPTGSTAYSLSCGGPII---VPH--SNNFVITPIA 210 (290)
T ss_pred CEECCCEEEEEEEEECCCCCCEE-EEEEECCEEEEEEECCEEEEECCCCHHHHHHHCCCCEE---CCC--CCCEEEEECC
T ss_conf 10354654578985068845033-68998789989995367999678855786864699555---698--7608997557
Q ss_pred HCCCH
Q ss_conf 21520
Q gi|254780414|r 180 VHTVG 184 (520)
Q Consensus 180 ~hT~~ 184 (520)
-||..
T Consensus 211 PhsL~ 215 (290)
T PRK01911 211 PHSLN 215 (290)
T ss_pred CCCCC
T ss_conf 66467
No 426
>PRK04011 peptide chain release factor 1; Provisional
Probab=25.46 E-value=25 Score=15.41 Aligned_cols=34 Identities=6% Similarity=0.137 Sum_probs=16.1
Q ss_pred EEEEECCCC-HHHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 366405640-47799999986223656999973895
Q gi|254780414|r 225 VICAVSGGV-DSTVAAFLIYEAIGINLTCVLVDHGF 259 (520)
Q Consensus 225 Vi~~lSGGV-DStV~A~Ll~kAig~~l~~vfVD~Gl 259 (520)
+|+|-||.- |-..-.-.+|.-|.++...+ ||.+-
T Consensus 219 iilgGp~~~K~~f~~~d~ld~rL~~kIi~~-~Dv~Y 253 (409)
T PRK04011 219 ILIGGPGPTKEEFLEGDYLHYELKKKILGL-FDVSY 253 (409)
T ss_pred EEECCCCHHHHHHHHCCCCCHHHHHHEEEE-EECCC
T ss_conf 995168358788632354457788336456-51688
No 427
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=25.40 E-value=45 Score=13.61 Aligned_cols=104 Identities=19% Similarity=0.387 Sum_probs=43.3
Q ss_pred EEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHHCCC
Q ss_conf 124652122215202577998755010644111406789999999976504440366405640--477999999862236
Q gi|254780414|r 171 YAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGV--DSTVAAFLIYEAIGI 248 (520)
Q Consensus 171 yGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGV--DStV~A~Ll~kAig~ 248 (520)
||.-|.-=.+=.+.|.+ |+ .+-....-|+..+=.+. +.+|-.+. +++|=.=||||| |.|..|+|-.=|-
T Consensus 31 YGs~~eaA~~W~~~GA~----Wi-HlVDLDAAFg~G~N~e~-l~EiVg~L-ddrV~vELsGGiRDD~SL~~AL~tGa~-- 101 (246)
T TIGR01919 31 YGSPLEAALKWQEDGAE----WI-HLVDLDAAFGRGSNHEL-LAEIVGKL-DDRVDVELSGGIRDDESLEAALATGAA-- 101 (246)
T ss_pred CCCHHHHHHHHHHCCCC----EE-EEEEEHHHCCCCCHHHH-HHHHHHHH-CCEEEEEEECCCCCHHHHHHHHHHCCC--
T ss_conf 77667898998863650----75-33530001378970889-99998630-787889850685567899999980773--
Q ss_pred CEEEEEECCCCCCCCC-HHHHHHHHHHC--CCCCEEEEEHH
Q ss_conf 5699997389551562-78999988623--69857997588
Q gi|254780414|r 249 NLTCVLVDHGFMRKNE-VENIISLFKGY--PNFPLRVVDAS 286 (520)
Q Consensus 249 ~l~~vfVD~GllRknE-~~~v~~~~~~~--~~~~l~~vda~ 286 (520)
=|-|=|-=|-+-| ...|.+.|-++ -++.+...|-.
T Consensus 102 ---RVNiGTAALE~P~W~A~vI~~yGd~vAVgl~V~~~DGe 139 (246)
T TIGR01919 102 ---RVNIGTAALENPEWIASVIKKYGDKVAVGLDVRLIDGE 139 (246)
T ss_pred ---EEECCHHCCCCCHHHHHHHHHCCCEEEEEEEEEEECCC
T ss_conf ---44001010468237889987607768754578987385
No 428
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=25.34 E-value=45 Score=13.61 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=28.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH
Q ss_conf 36640564047799999986223656999973895515627899998
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISL 271 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~ 271 (520)
+|.|.+|.|-|+++..|+.+-+.+.+..+=++... -++|+....+.
T Consensus 4 ~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~-a~g~alDl~~~ 49 (142)
T pfam00056 4 AVVGAGGGVGSSLAFALALQGLADELVLVDINKDK-AEGVAMDLSHG 49 (142)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHCC
T ss_conf 99898778999999999747966347885057764-11799998614
No 429
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=25.31 E-value=45 Score=13.60 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=31.4
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHCCCEE
Q ss_conf 997999985388999999975376898089988997789999899709699
Q gi|254780414|r 50 NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKT 100 (520)
Q Consensus 50 ~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGICyG~QlLa~~~GG~V 100 (520)
..+|+|+|= |++ |-++..---..+|+.|||=-.-+.|...|-++
T Consensus 69 GvdaiiIaC-----f~D--Pgl~~~Re~~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 69 GVDAIIIAC-----FSD--PGLAAARERAAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred CCCEEEEEE-----CCC--HHHHHHHHHHCCCCEEHHHHHHHHHHHHCCEE
T ss_conf 776899870-----587--68999999827982542499999998745667
No 430
>TIGR01428 HAD_type_II haloacid dehalogenase, type II; InterPro: IPR006328 These proteins catalyze the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids . They belong to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterised, but clearly utilise a substantially different catalytic mechanism and are thus unlikely to be related.; GO: 0019120 hydrolase activity acting on acid halide bonds in C-halide compounds, 0008152 metabolic process.
Probab=25.31 E-value=45 Score=13.60 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf 05788998888659406985289898899723997999985388
Q gi|254780414|r 18 QFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPA 61 (520)
Q Consensus 18 QytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~ 61 (520)
+-..-+..+.+.|..|.++. ..+..+++..++=+|||+|+.
T Consensus 86 ~~~~~L~~~~~~L~p~pD~~---~gL~~L~~~G~~l~iLSNg~~ 126 (207)
T TIGR01428 86 AAADRLAEAYLRLPPHPDVP---AGLRALKERGLRLAILSNGSP 126 (207)
T ss_pred HHHHHHHHHHHCCCCCCCCH---HHHHHHHHCCCEEEEECCCCH
T ss_conf 88999987763589986618---899999764323652148986
No 431
>pfam08665 PglZ PglZ domain. This family is a member of the Alkaline phosphatase clan.
Probab=25.20 E-value=45 Score=13.59 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
Q ss_conf 520257799875501064411140678999999997650444036640564047
Q gi|254780414|r 182 TVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDS 235 (520)
Q Consensus 182 T~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDS 235 (520)
+.+..++|+|-. + .-...+++.+..-.+.|+.+++.+|+.-.+.-+|.
T Consensus 77 ~~~R~~iL~~~~----~--~ai~~~~l~~~~~~~~~e~~~~~~vvyIyhn~IDa 124 (176)
T pfam08665 77 LENREKILEKKG----G--DAFQADDLMELKKDERRELVRGKKVVYIYHNKIDA 124 (176)
T ss_pred HHHHHHHHHHCC----C--CEEEHHHHHCCCHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 878899997400----5--35767676536888999750578679999546631
No 432
>KOG2316 consensus
Probab=25.16 E-value=45 Score=13.58 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=72.1
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC-----CC---------HHHHHHHHHHCCCCCEEEEEHHHHH
Q ss_conf 036640564047799999986223656999973895515-----62---------7899998862369857997588999
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRK-----NE---------VENIISLFKGYPNFPLRVVDASERF 289 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRk-----nE---------~~~v~~~~~~~~~~~l~~vda~~~F 289 (520)
||+..+|||-||--.-.-+ -+.|.++.+.- =||- +| ..++.+.|.+-+++++....-..+=
T Consensus 2 rvvaLiSGGKDScynmm~c-v~~gHeiVaLa----nl~p~~d~~delDSyMyQtVGh~~i~lyaecm~lPlyrr~i~g~s 76 (277)
T KOG2316 2 RVVALISGGKDSCYNMMCC-VRLGHEIVALA----NLHPKEDESDELDSYMYQTVGHDVIDLYAECMGLPLYRRRIRGRS 76 (277)
T ss_pred CEEEEEECCHHHHHHHHHH-HHCCCEEEEEE----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 1899971780789999999-98487435643----246875552057788988602778999999846834664214864
Q ss_pred HH-HHCCCCCHHHHHHHHHHHHHHHHH---HHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCC
Q ss_conf 99-966898889999887565899999---99974399709986462202454202467776303443023201132032
Q gi|254780414|r 290 IR-KLKNIVDPETKRKVIGQLFIEVFE---EEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDM 365 (520)
Q Consensus 290 l~-~L~gv~DPE~KRkiIG~~Fi~vf~---~~a~~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~ 365 (520)
.+ +|. -++++ |++-=+.|+ ..-.+++..+=..-|.|..|---. -|-..-.++.
T Consensus 77 ~nq~l~--Y~~t~-----~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~---------------RVEnVC~RL~- 133 (277)
T KOG2316 77 INQKLQ--YTKTE-----GDEVEDLYELLKTVKEKIPDVEAVSVGAILSDYQRT---------------RVENVCSRLG- 133 (277)
T ss_pred CCCCCC--CCCCC-----CCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH---------------HHHHHHHHHC-
T ss_conf 541354--45688-----831899999999998628870044334667688899---------------9998986608-
Q ss_pred CHHHHHHHHHHHHHHHHHHHH---CCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 022378987389999999981---99988942688898311122100036789999999
Q gi|254780414|r 366 KLVEPLKELFKDEVRLLGKEL---RLPDSFVERHPCPGPGLAIRCIGEITEERINILRE 421 (520)
Q Consensus 366 ~liEPl~~l~KdEVR~lg~~L---glp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ 421 (520)
++||..|.+-+--+|=.+. |+..-++.- --+||.-+.+|.--.|--..|.+
T Consensus 134 --L~~Ls~LW~rdQ~~LL~eMi~~g~~AiiiKV---AAigL~~khLgksL~em~p~L~~ 187 (277)
T KOG2316 134 --LVSLSYLWQRDQEELLQEMILSGLDAIIIKV---AAIGLGRKHLGKSLDEMQPYLLK 187 (277)
T ss_pred --CEEEHHHHHCCHHHHHHHHHHCCCCEEEEEE---EECCCCHHHHCCCHHHHHHHHHH
T ss_conf --6332677740699999999974877499997---40466766647678888799997
No 433
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=25.08 E-value=45 Score=13.57 Aligned_cols=63 Identities=21% Similarity=0.499 Sum_probs=43.0
Q ss_pred EEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCH------HHHHHHHHHHHHHHCC------CCEEEEECCCCHHHHH
Q ss_conf 124652122215202577998755010644111406------7899999999765044------4036640564047799
Q gi|254780414|r 171 YAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMS------SYHKEIVSRIKEQVGN------ERVICAVSGGVDSTVA 238 (520)
Q Consensus 171 yGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~------~~~~~~i~~Ir~~vg~------~kVi~~lSGGVDStV~ 238 (520)
++-.|+|+ |++..-+|+-.||-.. .+.++..+.||+++-. =-++..++||--|-..
T Consensus 80 ~~~lf~~~------------n~i~~~~gagNNwa~Gy~~~G~~~~d~i~d~Irk~~E~cD~l~gf~i~~Sl~GGTGSGlG 147 (425)
T cd02187 80 FGQLFRPD------------NFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMG 147 (425)
T ss_pred CCCCCCCC------------CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHH
T ss_conf 64664876------------466668872022135000346888999999999999848986756899865887765188
Q ss_pred HHHHHHH
Q ss_conf 9999862
Q gi|254780414|r 239 AFLIYEA 245 (520)
Q Consensus 239 A~Ll~kA 245 (520)
+.|+.+-
T Consensus 148 s~lle~L 154 (425)
T cd02187 148 TLLISKI 154 (425)
T ss_pred HHHHHHH
T ss_conf 9999999
No 434
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.95 E-value=46 Score=13.56 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCCCCCEEEEEEC---CC----CHHHHHHHHHHHCCCEEEEECCCCC--HH----HHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf 6344886999988---97----0578899888865940698528989--88----9972399799998538899999997
Q gi|254780414|r 3 KRERSSKVLIIDF---GS----QFTQLIARRVRESKVYCEVIAFKNA--LD----YFKEQNPQAIILSGSPASSLDIDSP 69 (520)
Q Consensus 3 ~~~~~~~IlIlDf---GS----QytqLIaRriRelgVyseI~P~~~~--~e----~i~~~~p~GIILSGGP~SV~d~~ap 69 (520)
++.+..||+|+=. |+ +.-+-+.+++++.++..++.+-+.. .. +.....++.||..||-.++++
T Consensus 2 ~~~~m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~t~~~~~a~~la~~a~~~g~d~vv~~GGDGTv~e---- 77 (304)
T PRK11914 2 RRHEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHHARHLVAAALAKGTDALVVVGGDGVISN---- 77 (304)
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHH----
T ss_conf 7045866999999777998568899999999998799099993278789999999888649969999956259889----
Q ss_pred CCCHHHHHCCCCEEEE
Q ss_conf 5376898089988997
Q gi|254780414|r 70 QIPKEILESNIPLLGI 85 (520)
Q Consensus 70 ~~~~~I~~~~iPILGI 85 (520)
+...+.+.++| |||
T Consensus 78 -v~~~l~~~~~p-lgi 91 (304)
T PRK11914 78 -ALQVLAGTDIP-LGI 91 (304)
T ss_pred -HHHHHCCCCCE-EEE
T ss_conf -87641357860-899
No 435
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.81 E-value=46 Score=13.54 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=26.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
Q ss_conf 3664056404779999998622365699997389551562
Q gi|254780414|r 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE 264 (520)
Q Consensus 225 Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE 264 (520)
+|+|-||.=-||-|+.|..+ +-..++|+|.|=-.+
T Consensus 4 iilG~pGaGK~T~A~~La~~-----~~i~hlstgd~~r~~ 38 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK-----LGLPHLDTGDILRAA 38 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH-----CCCCEECCCCCCCHH
T ss_conf 99899999889999999997-----699785522011110
No 436
>pfam00091 Tubulin Tubulin/FtsZ family, GTPase domain. This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Probab=24.77 E-value=46 Score=13.53 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHCCCCCCCCCHH-----HHHHHHHHHHHHH---CC---CCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 50106441114067-----8999999997650---44---40366405640477999999862
Q gi|254780414|r 194 HHVAGIQDNWVMSS-----YHKEIVSRIKEQV---GN---ERVICAVSGGVDSTVAAFLIYEA 245 (520)
Q Consensus 194 ~~Ic~~~~~W~~~~-----~~~~~i~~Ir~~v---g~---~kVi~~lSGGVDStV~A~Ll~kA 245 (520)
..-+++-.+|...- +.++..+.||+++ .. =-++..++||--|-..+.|+..+
T Consensus 82 ~~~~gagnn~a~G~~~~~~~~~~~~~~irk~~E~cd~~~gf~i~~SlgGGTGSG~gs~l~~~l 144 (210)
T pfam00091 82 KGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDGLDGFFITAGLGGGTGSGAAPVIAEIL 144 (210)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 457687878002354799999999999999998258845188772226877655899999999
No 437
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=24.76 E-value=46 Score=13.53 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=39.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCH--HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 869999889705788998888659406985289898--899723997999985388999999975376898089988997
Q gi|254780414|r 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNAL--DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 8 ~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~--e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
.++.|-... .+....++++-.. -|.|-|-.- ......+.+|+||+||-. =.+.+.+.+-+.++|||-.
T Consensus 22 ~~~~igAm~---~~~~l~~~~~g~l--vI~~gdR~di~~~a~~~~~~~iIlTgg~~-----p~~~v~~la~~~~ipii~t 91 (105)
T pfam07085 22 GKVVIGAMS---VENMLEYLRPGDL--VITPGDREDIQLAALLAGIAGLILTGGFE-----PSEEVLKLAEEAGLPVLST 91 (105)
T ss_pred CCEEEEECC---HHHHHHHHCCCCE--EEEECCCHHHHHHHHHHCCCEEEEECCCC-----CCHHHHHHHHHCCCEEEEE
T ss_conf 869999878---9999986068979--99927968999999982487899948989-----8999999998779839996
Q ss_pred CHHHHH
Q ss_conf 789999
Q gi|254780414|r 86 CYGQQI 91 (520)
Q Consensus 86 CyG~Ql 91 (520)
=|..--
T Consensus 92 ~~dT~~ 97 (105)
T pfam07085 92 PYDTFT 97 (105)
T ss_pred CCCHHH
T ss_conf 688999
No 438
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.76 E-value=46 Score=13.53 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC-------CCCHHHHHH
Q ss_conf 4779999998622--3656999973895515627899998862369857997588999999668-------988899998
Q gi|254780414|r 234 DSTVAAFLIYEAI--GINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKN-------IVDPETKRK 304 (520)
Q Consensus 234 DStV~A~Ll~kAi--g~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~g-------v~DPE~KRk 304 (520)
|.+-+...+..++ .+++.+||.-|.-|-.+=.+-+.+.=+ ...+.+.-.|.+..-++.++. ..+|.
T Consensus 166 d~~~a~~~~~~~L~~~pdi~~I~~~nd~~a~ga~~Al~~ag~-~~~i~vvg~D~~~~~~~~i~~G~i~~tv~Q~p~---- 240 (271)
T cd06312 166 DPTEVASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGL-KGKVKLGGFDLSPATLQAIKAGYIQFAIDQQPY---- 240 (271)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCC-CCCEEEEEECCCHHHHHHHHCCCCEEEEECCHH----
T ss_conf 999999999999984989888998896789999999996699-998599998899999999986995599958999----
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 875658999999997
Q gi|254780414|r 305 VIGQLFIEVFEEEAK 319 (520)
Q Consensus 305 iIG~~Fi~vf~~~a~ 319 (520)
-.|..-++..-+..+
T Consensus 241 ~~Gy~aV~~l~~~l~ 255 (271)
T cd06312 241 LQGYLPVSLLWLYKR 255 (271)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 439
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=24.71 E-value=17 Score=16.69 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=14.4
Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 97239979999853889999999753
Q gi|254780414|r 46 FKEQNPQAIILSGSPASSLDIDSPQI 71 (520)
Q Consensus 46 i~~~~p~GIILSGGP~SV~d~~ap~~ 71 (520)
+.+.+|++|++ |.|.+......+..
T Consensus 47 i~~~~~~~ivi-G~P~~~~g~~~~~~ 71 (99)
T smart00732 47 IKKYQPDLIVI-GLPLNMNGTASRET 71 (99)
T ss_pred HHHHCCCEEEE-CCCCCCCCCCCHHH
T ss_conf 99849988997-47524899819999
No 440
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=24.70 E-value=46 Score=13.53 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=40.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECC
Q ss_conf 48869999889705788998888659406985289898899723997999985
Q gi|254780414|r 6 RSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSG 58 (520)
Q Consensus 6 ~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSG 58 (520)
...+|.|+-.| ....+++|.+|+.|.+..|+..+...+..+...--|++-+-
T Consensus 2 ~~~~v~IvG~G-liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~ 53 (279)
T COG0287 2 ASMKVGIVGLG-LMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDEL 53 (279)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf 86489998774-67799999999769847997247746778776635853010
No 441
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=24.68 E-value=16 Score=16.88 Aligned_cols=153 Identities=17% Similarity=0.223 Sum_probs=63.4
Q ss_pred CCEEEEEECCCC--HHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCC--CCHHHH----HC
Q ss_conf 886999988970--5788998888659406985289898899723997999985388999999975--376898----08
Q gi|254780414|r 7 SSKVLIIDFGSQ--FTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQ--IPKEIL----ES 78 (520)
Q Consensus 7 ~~~IlIlDfGSQ--ytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~--~~~~I~----~~ 78 (520)
++.++=+||-+. +++---.+|-+ ...+.+ ...++||||= |.++... +-.+++ +.
T Consensus 113 ~QQllR~D~E~~~~~~~~~~~~L~~-----------~~~~~l--~~~d~VvLSD-----YaKGvLt~~v~~~~I~~Ar~~ 174 (321)
T TIGR02198 113 NQQLLRVDFEERKPINAEEEARLLA-----------AIKEQL--ASADAVVLSD-----YAKGVLTPSVVQEVIAAAREA 174 (321)
T ss_pred CEEEEEEEEECCCCCCHHHHHHHHH-----------HHHHHH--CCCCEEEEEE-----CCCCCCCHHHHHHHHHHHHHC
T ss_conf 5058997410277689778999999-----------999972--3287899986-----687635857899999999966
Q ss_pred CCCEEEECHHHHHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHH-------CCCCCCCE
Q ss_conf 99889977899998997096999869866103667523886222787266553368600220110-------12444211
Q gi|254780414|r 79 NIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE-------HIPEGFEV 151 (520)
Q Consensus 79 ~iPILGICyG~QlLa~~~GG~V~~~~~~EyG~~~I~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~-------~lP~gf~v 151 (520)
++|||====|- =.+.+-|+++-..+..|+..+- +..+..|-++.+-+. ++.=.+-+
T Consensus 175 ~~pVlVDPKg~-df~~Y~GAtl~TPN~~E~~~av----------------G~~~~~~~~~~~~~~aa~~L~~~~~l~alL 237 (321)
T TIGR02198 175 GKPVLVDPKGK-DFSRYRGATLITPNRKEAEAAV----------------GIKFIACENEAELVKAAEKLLEELDLEALL 237 (321)
T ss_pred CCCEEEECCCC-CHHHHCCCCCCCCCHHHHHHHH----------------CCCCHHCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 89199807876-2345146642366879999985----------------887011058178999999999970996799
Q ss_pred EECCCCCCEEEEEECCCCE-EEEEEEEHHHC-CCHHHHHHHHHHHHH
Q ss_conf 2323983178898635001-12465212221-520257799875501
Q gi|254780414|r 152 IASSDSTPFAFIADEKRKY-YAVQFHPEVVH-TVGGSQLIDNFVHHV 196 (520)
Q Consensus 152 iA~S~~~~iaai~~~~~~i-yGVQFHPEV~h-T~~G~~iL~NFl~~I 196 (520)
+-+|+.+ +.-+.-.+.++ +-.|=+ ||.. |-.|.+.+--+-.-+
T Consensus 238 vTRsE~G-MtL~~~~~~~~H~Pa~A~-EVyDVTGAGDTVIA~La~~l 282 (321)
T TIGR02198 238 VTRSEKG-MTLFTREGEPIHIPAQAR-EVYDVTGAGDTVIATLALAL 282 (321)
T ss_pred EEECCCC-CEEECCCCCEEEECCCCE-EEEEECCCCHHHHHHHHHHH
T ss_conf 9507762-066768996266035410-23333387458999999998
No 442
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=24.64 E-value=46 Score=13.52 Aligned_cols=27 Identities=0% Similarity=-0.172 Sum_probs=14.4
Q ss_pred EEEEEEEHHHC--CCHHHHHHHHHHHHHC
Q ss_conf 12465212221--5202577998755010
Q gi|254780414|r 171 YAVQFHPEVVH--TVGGSQLIDNFVHHVA 197 (520)
Q Consensus 171 yGVQFHPEV~h--T~~G~~iL~NFl~~Ic 197 (520)
.|=+++|+... .+.-.+.|++|-+++|
T Consensus 141 ~GG~~~~~~~s~~G~~a~~~l~~~~~d~a 169 (240)
T PRK10411 141 SGGTLERKYGCYVNPSLISQLKSLEIDLF 169 (240)
T ss_pred ECCEEECCCCEEECHHHHHHHHCCCCCEE
T ss_conf 89999788882789999999865389999
No 443
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=24.55 E-value=46 Score=13.51 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 73899999999819998894268889831112210003678999999999
Q gi|254780414|r 374 LFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESD 423 (520)
Q Consensus 374 l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~i~r~ad 423 (520)
-.+++--+|-+.|+...+++-. -.-+|---=|-|||+--+.|-+.|..+
T Consensus 456 ~~~~~~~r~d~L~~~~pewvG~-~v~~~~~~Hr~LG~~m~~~~gv~R~~~ 504 (620)
T TIGR01811 456 ALAEEQDRLDRLLKMDPEWVGD-NVENADKFHRELGEIMWENCGVSRNNE 504 (620)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHHHHCCEEECCH
T ss_conf 9998998888886158320565-446667899998788766121366113
No 444
>pfam08929 DUF1911 Domain of unknown function (DUF1911). This domain is found in a set of hypothetical bacterial proteins.
Probab=24.44 E-value=47 Score=13.49 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCC-CCC
Q ss_conf 38999999998199988942688-898
Q gi|254780414|r 375 FKDEVRLLGKELRLPDSFVERHP-CPG 400 (520)
Q Consensus 375 ~KdEVR~lg~~Lglp~~~~~RhP-FPG 400 (520)
.-=||-++...|||+++.+.-|| ||+
T Consensus 83 WafEaaa~~~l~~lDDs~lrd~~~YP~ 109 (111)
T pfam08929 83 WAFEAAAVAKLLGLDDSSLRDHPHYPY 109 (111)
T ss_pred EHHHHHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 047999999995688788648999999
No 445
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=24.44 E-value=47 Score=13.49 Aligned_cols=55 Identities=18% Similarity=0.033 Sum_probs=25.9
Q ss_pred CEEEEEEEE--HHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 011246521--22215202577998755010644111406789999999976504440
Q gi|254780414|r 169 KYYAVQFHP--EVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNER 224 (520)
Q Consensus 169 ~iyGVQFHP--EV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~k 224 (520)
++..+.|.| +..-++.-.+-|++-= -|-=|..||=.+=.=.-.+..||+.+.+.+
T Consensus 159 ~v~~v~~~~~e~a~~~p~al~AI~~AD-~IIiGPgnp~tSI~PiL~VpgI~eAL~~s~ 215 (303)
T cd07186 159 EVRDVRFVGAEEARPAPEVLEAIEDAD-LVIIGPSNPVTSIGPILALPGIREALRDKK 215 (303)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHCC-EEEECCCCCHHHHCCCCCCHHHHHHHHHCC
T ss_conf 658899658887878989999998599-899858862132153114556999998579
No 446
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=24.26 E-value=27 Score=15.19 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEECCCCHHHHHHHHHHHHCCC-CEEEEEEC--CCCCCCCC-HHHHHHHHHH
Q ss_conf 6405640477999999862236-56999973--89551562-7899998862
Q gi|254780414|r 227 CAVSGGVDSTVAAFLIYEAIGI-NLTCVLVD--HGFMRKNE-VENIISLFKG 274 (520)
Q Consensus 227 ~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD--~GllRknE-~~~v~~~~~~ 274 (520)
+=+=||=|.-+.+--+..-|-| ++..|||| =|-||=++ ++=+++..+.
T Consensus 287 LDvGGGA~~e~v~eA~~~vLsD~~VKvvfiNIFGGI~RCD~vA~G~v~A~~~ 338 (389)
T TIGR01016 287 LDVGGGASEERVKEALKLVLSDKSVKVVFINIFGGITRCDEVAKGLVEALKD 338 (389)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHC
T ss_conf 2458788989999998987359982089997068600187887889999831
No 447
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=24.15 E-value=47 Score=13.45 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=8.9
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 6898089988997
Q gi|254780414|r 73 KEILESNIPLLGI 85 (520)
Q Consensus 73 ~~I~~~~iPILGI 85 (520)
+.+-+.+||+.|-
T Consensus 121 ~~L~~~GIPV~gH 133 (254)
T cd06557 121 RALVDAGIPVMGH 133 (254)
T ss_pred HHHHHCCCCEEEE
T ss_conf 9999879976654
No 448
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.13 E-value=47 Score=13.45 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=41.0
Q ss_pred EEEEECCCCHHH----HHHHHHHHCCCEEEEECCCCCHH-------HHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 999988970578----89988886594069852898988-------9972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQFTQ----LIARRVRESKVYCEVIAFKNALD-------YFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQytq----LIaRriRelgVyseI~P~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
+++=|....|-. -|.+..++.|+...+...+.+.+ .+...+++|||+++.-. ......-+.+.+.
T Consensus 4 vivp~~~~pf~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~e~~~i~~~~~~~vdgiI~~~~~~----~~~~~~~~~~~~~ 79 (267)
T cd01536 4 LVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDS----AALTPALKKANAA 79 (267)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHC
T ss_conf 996899898999999999999998499999996999999999999999975999999931584----1558999999987
Q ss_pred CCCEEEE
Q ss_conf 9988997
Q gi|254780414|r 79 NIPLLGI 85 (520)
Q Consensus 79 ~iPILGI 85 (520)
++|+.-+
T Consensus 80 ~iPvV~~ 86 (267)
T cd01536 80 GIPVVTV 86 (267)
T ss_pred CCCEEEE
T ss_conf 9969998
No 449
>pfam03613 EIID-AGA PTS system mannose/fructose/sorbose family IID component.
Probab=24.12 E-value=39 Score=14.05 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=6.7
Q ss_pred HHHHCCCCCHHHHHHHHH
Q ss_conf 999668988899998875
Q gi|254780414|r 290 IRKLKNIVDPETKRKVIG 307 (520)
Q Consensus 290 l~~L~gv~DPE~KRkiIG 307 (520)
|++|-. |||+.++..-
T Consensus 40 lkklY~--d~e~~~~Al~ 55 (264)
T pfam03613 40 LKKLYK--DKEELKEALK 55 (264)
T ss_pred HHHHCC--CHHHHHHHHH
T ss_conf 999859--9899999999
No 450
>TIGR02653 Lon_rel_chp conserved hypothetical protein; InterPro: IPR013473 This entry describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to IPR008269 from INTERPRO, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of Escherichia coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]..
Probab=24.10 E-value=47 Score=13.45 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=48.3
Q ss_pred HHHHHHH--HHCCCE-EEEECCCCCHHHH-HHCCCCEEEECCCCCCCC----CCCCC-----------CCCHHHHHC-CC
Q ss_conf 8899888--865940-6985289898899-723997999985388999----99997-----------537689808-99
Q gi|254780414|r 21 QLIARRV--RESKVY-CEVIAFKNALDYF-KEQNPQAIILSGSPASSL----DIDSP-----------QIPKEILES-NI 80 (520)
Q Consensus 21 qLIaRri--RelgVy-seI~P~~~~~e~i-~~~~p~GIILSGGP~SV~----d~~ap-----------~~~~~I~~~-~i 80 (520)
|+|.|-| =|.|.- ||+=|-.|--... ++..|..|..||||-.|- .-.+- -+| ++-.+ ..
T Consensus 206 h~l~RliPlvEnNYNlcELGPrgTGKShvYkE~SPn~iL~sGGqTTVANLFyN~str~~GLVG~WDvVAFD-EVAgi~fk 284 (677)
T TIGR02653 206 HLLTRLIPLVENNYNLCELGPRGTGKSHVYKELSPNSILMSGGQTTVANLFYNMSTRQIGLVGLWDVVAFD-EVAGIEFK 284 (677)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEEEE-EECCCCCC
T ss_conf 99975432300575547647889873405413584212205884356776665421630203300125310-00487204
Q ss_pred CEEEECHHHHHHHHH-CCCEEEECCCCCCCEEEEEE
Q ss_conf 889977899998997-09699986986610366752
Q gi|254780414|r 81 PLLGICYGQQIMCQS-LGGKTKNSQSREFGRAFIEI 115 (520)
Q Consensus 81 PILGICyG~QlLa~~-~GG~V~~~~~~EyG~~~I~i 115 (520)
|== |-|+|=.+ --|+-.|++..--|.|.+-.
T Consensus 285 dKd----gv~imKdYmaSGSFARGkes~~g~ASivf 316 (677)
T TIGR02653 285 DKD----GVQIMKDYMASGSFARGKESIEGKASIVF 316 (677)
T ss_pred CCC----CHHHHHHHHCCCCCCCCCCCCCCCEEEEE
T ss_conf 863----10343354204785345346355334899
No 451
>TIGR02055 APS_reductase adenylylsulfate reductase, thioredoxin dependent; InterPro: IPR011798 This entry describes recently identified adenosine 5'-phosphosulphate (APS) reductase activity found in sulphate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulphate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL and SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=24.05 E-value=47 Score=13.44 Aligned_cols=143 Identities=19% Similarity=0.274 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH---HHCCCCCHHHHHHHHHH
Q ss_conf 404779999998622365699997389551562789999886236985799758899999---96689888999988756
Q gi|254780414|r 232 GVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR---KLKNIVDPETKRKVIGQ 308 (520)
Q Consensus 232 GVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~---~L~gv~DPE~KRkiIG~ 308 (520)
|..-.|.+.|+.|. ..+.--+|.|||.|=+ |+-++.+..++.+++.+.+.--.+.=+. +..|. +
T Consensus 3 ~~ED~VL~dl~~k~-~~~~~v~~LDTGrlf~-ET~~~idqv~E~Y~~~~~~~~~~~~~~~e~v~~~G~-----------n 69 (200)
T TIGR02055 3 GAEDLVLVDLIAKV-RKDVEVFFLDTGRLFK-ETYELIDQVEERYDILIKVLVPPELTVEEQVEEYGL-----------N 69 (200)
T ss_pred HHHHHHHHHHHHHC-CCCCCEEEECCCCCHH-HHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCH-----------H
T ss_conf 01248999999860-7997278853888616-779887653201671012016887788899988473-----------5
Q ss_pred HHHHHHHH-----HHHHC-------CCC-EEE-----EEC-CCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHH
Q ss_conf 58999999-----99743-------997-099-----864-622024542024677763034430232011320320223
Q gi|254780414|r 309 LFIEVFEE-----EAKKI-------GGA-QFL-----GQG-TLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVE 369 (520)
Q Consensus 309 ~Fi~vf~~-----~a~~~-------~~~-~~L-----~QG-TlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liE 369 (520)
.|.+-.|- .++|+ .+. -|+ .|| --. .++..+-- =--.+.|++--.| +=
T Consensus 70 lF~~~ve~~~~CC~~RKV~PL~raL~G~~AW~TGLRR~q~P~TR-----------A~~~~~e~-De~~~~PekPl~K-~n 136 (200)
T TIGR02055 70 LFYRSVELRKECCRIRKVEPLKRALSGVSAWITGLRREQSPPTR-----------AQAPFLEI-DEAFGSPEKPLVK-VN 136 (200)
T ss_pred HHHHHCCCHHHCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCH-----------HHHHHHHC-CCCCCCCCCCEEE-EC
T ss_conf 55540211010661454214574048876203001006768755-----------44155420-2236789876144-36
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
Q ss_conf 7898738999999998199988942688898
Q gi|254780414|r 370 PLKELFKDEVRLLGKELRLPDSFVERHPCPG 400 (520)
Q Consensus 370 Pl~~l~KdEVR~lg~~Lglp~~~~~RhPFPG 400 (520)
||.+---.||-+-=+..+||.+=++++=.|=
T Consensus 137 PLa~Wt~~~vw~Yi~~~~~~~NpL~~~GYpS 167 (200)
T TIGR02055 137 PLADWTLEDVWEYIADNEVPYNPLHDRGYPS 167 (200)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6000466899999997078878631168853
No 452
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=24.05 E-value=47 Score=13.44 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=32.4
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCC
Q ss_conf 97650444036640564047799999986223-656999973895515
Q gi|254780414|r 216 IKEQVGNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRK 262 (520)
Q Consensus 216 Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig-~~l~~vfVD~GllRk 262 (520)
..+.-.|++|++--.+|.-|..||.+|.++ | ++++. ++-|++.-
T Consensus 55 ~~~~~k~k~ivvyC~~G~RS~~Aa~~L~~~-Gf~~V~~--L~GGi~~W 99 (101)
T cd01518 55 NLDLLKGKKVLMYCTGGIRCEKASAYLKER-GFKNVYQ--LKGGILKY 99 (101)
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCCCEEE--ECCHHHHH
T ss_conf 212143876999859982799999999984-9870689--66358975
No 453
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=24.04 E-value=32 Score=14.63 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCHHHHH
Q ss_conf 3899999999819998894268889831112210003678999
Q gi|254780414|r 375 FKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERIN 417 (520)
Q Consensus 375 ~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g~vt~e~~~ 417 (520)
..+|||++++.||+..--+-- -| +.+=.+.+|+.+
T Consensus 238 v~~~v~~~~e~lg~DPl~~as---~G-----~ll~~v~~e~a~ 272 (293)
T cd02197 238 VREEVRGACEMLGLDPLYLAN---EG-----KFVAIVPPEDAE 272 (293)
T ss_pred CCHHHHHHHHHHCCCHHHHHC---CC-----EEEEEECHHHHH
T ss_conf 888999999985939878834---85-----399998789999
No 454
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.01 E-value=48 Score=13.44 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=37.5
Q ss_pred CEEEEEE-CCCCHH----HHHHHHHHHCCCEEEEEC-------CC----CCHHHHHHCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 8699998-897057----889988886594069852-------89----8988997239979999853889999999753
Q gi|254780414|r 8 SKVLIID-FGSQFT----QLIARRVRESKVYCEVIA-------FK----NALDYFKEQNPQAIILSGSPASSLDIDSPQI 71 (520)
Q Consensus 8 ~~IlIlD-fGSQyt----qLIaRriRelgVyseI~P-------~~----~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~ 71 (520)
.+|.|+= .++.-. +.+.+.+++.|+.+-+-+ .+ .+.+.+ ....+-+|--||-.+ -.+.
T Consensus 5 k~vgIv~k~~~~~a~~~~~~l~~~L~~~gi~v~ld~~~a~~~~~~~~~~~~~~~~-~~~~Dlii~lGGDGT-----~L~~ 78 (296)
T PRK01231 5 RNIGLIGRLGSSQVVETLRRLKRFLLDRHLHVILEEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDGS-----LLGA 78 (296)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCCCCCCCHHHC-CCCEEEEEEECCCCH-----HHHH
T ss_conf 8999998489879999999999999878899999324776658788662453341-653049999578728-----9999
Q ss_pred CHHHHHCCCCEEEECHHH
Q ss_conf 768980899889977899
Q gi|254780414|r 72 PKEILESNIPLLGICYGQ 89 (520)
Q Consensus 72 ~~~I~~~~iPILGICyG~ 89 (520)
.......++|||||-+|.
T Consensus 79 ~~~~~~~~~PilGiN~G~ 96 (296)
T PRK01231 79 ARALARHNVPVLGINRGR 96 (296)
T ss_pred HHHHCCCCCCEEEEECCC
T ss_conf 999603699789885587
No 455
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.91 E-value=48 Score=13.42 Aligned_cols=77 Identities=14% Similarity=0.307 Sum_probs=43.7
Q ss_pred CCCCCEEEEE--ECCC----CHHHHHHHHHHHCCCEEEEECCCCCHH-------HHHHCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 3448869999--8897----057889988886594069852898988-------99723997999985388999999975
Q gi|254780414|r 4 RERSSKVLII--DFGS----QFTQLIARRVRESKVYCEVIAFKNALD-------YFKEQNPQAIILSGSPASSLDIDSPQ 70 (520)
Q Consensus 4 ~~~~~~IlIl--DfGS----QytqLIaRriRelgVyseI~P~~~~~e-------~i~~~~p~GIILSGGP~SV~d~~ap~ 70 (520)
+.++..|.++ |+.. +..+-|.+..++.|....+...+...+ .+...+++|+|+.++.. .+.+.
T Consensus 58 ~~~t~~Igvvvp~~~n~~~~~l~~~i~~~~~~~gy~~li~~s~~~~~~e~~~~~~l~~~~vdgiIv~~~~~----~~~~~ 133 (330)
T PRK11303 58 AGRTRSIGLIIPDLENTSYARIAKLLEQQARQRGYQLLIACSDDQPDNEMQCAEHLLQRQVDALIVATSLP----PEHPF 133 (330)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC----CCCHH
T ss_conf 08777677754544431567888999999996698799994799989999999999974899899946888----86299
Q ss_pred CCHHHHHCCCCEEEE
Q ss_conf 376898089988997
Q gi|254780414|r 71 IPKEILESNIPLLGI 85 (520)
Q Consensus 71 ~~~~I~~~~iPILGI 85 (520)
...+.+.++|+.-+
T Consensus 134 -~~~l~~~~iPvV~i 147 (330)
T PRK11303 134 -YQRLQNDGFPIIAL 147 (330)
T ss_pred -HHHHHHCCCCEEEE
T ss_conf -99998469978997
No 456
>KOG0174 consensus
Probab=23.85 E-value=29 Score=14.92 Aligned_cols=44 Identities=27% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 7550106441114067899999999765044403664056404779
Q gi|254780414|r 192 FVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTV 237 (520)
Q Consensus 192 Fl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV 237 (520)
|++.- |..+|.+.--.|++++-+|+.|.-.---=+-||||=-.|
T Consensus 153 fIYGf--~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~ 196 (224)
T KOG0174 153 FIYGF--CDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLV 196 (224)
T ss_pred EEEEE--EHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 45544--332217999999999999999999986068878789999
No 457
>pfam09656 PGPGW Putative transmembrane protein (PGPGW). Proteins in this entry are putative Actinobacterial proteins of about 150 amino acids in length, with three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=23.84 E-value=21 Score=15.97 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=10.8
Q ss_pred CCCCCCCCEEEECC
Q ss_conf 88898311122100
Q gi|254780414|r 396 HPCPGPGLAIRCIG 409 (520)
Q Consensus 396 hPFPGPGLaiRi~g 409 (520)
-|.||||..+=.+|
T Consensus 19 i~lPGPGwl~if~G 32 (53)
T pfam09656 19 IPLPGPGWLLVFIG 32 (53)
T ss_pred EECCCCCEEHHHHH
T ss_conf 20699840019999
No 458
>pfam08190 PIH1 pre-RNA processing PIH1/Nop17. This domain is involved in pre-rRNA processing. It has has been shown to be required either for nucleolar retention or correct assembly of the box C/D snoRNP in Saccharomyces cerevisiae. The C-terminal region of this family has similarity to the CS domain pfam04969.
Probab=23.67 E-value=46 Score=13.55 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=24.1
Q ss_pred CEEEEEEEEHHHCCCHHHHHHHHHHHHHC
Q ss_conf 01124652122215202577998755010
Q gi|254780414|r 169 KYYAVQFHPEVVHTVGGSQLIDNFVHHVA 197 (520)
Q Consensus 169 ~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic 197 (520)
..|-+-|||++.+--.-...|++|+..+|
T Consensus 98 ~v~Dv~~np~~~~~~~~~~~f~~~l~~~a 126 (325)
T pfam08190 98 TVYDVVFNPDTLQKAEKDQLFRNFLIQTA 126 (325)
T ss_pred EEEEEEECHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999857899998860989999999999
No 459
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase; InterPro: IPR011821 Proteins in this entry are important in the interconversion of the sulphur-containing amino acids L-cysteine and L-methionine in bacteria. In bacteria, inorganic sulphur is reduced to sulphide, which is then used to displace the acetyl group of O-acetyl-L-serine to form the essential amino acid L-cysteine. Biosynthesis of L-methionine then occurs via the transsulphuration pathway which involves the sequential action of two pyridoxal 5'-phosphate (PLP) enzymes, cystathionine gamma-synthase (CGS) and cystathionine beta-lyase (CBL). Firstly CGS catalyses the formation of the intermediate cystathione from a homoserine ester and L-cysteine. This intermediate is then converted by CBL to L-homoserine, which is subsequently methylated by methionine synthase to form L-methionine. For more information see . The CGS enzyme (P00935 from SWISSPROT) from Escherichia coli is, like other CGS enzymes, a homotetramer composed of two catalytically active dimers . The active site of each dimer is found at the interface between the monomers and involves residues from each monomer. Catalysis occurs by alpha,gamma-elimination/replacement reactions..
Probab=23.66 E-value=17 Score=16.60 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=22.6
Q ss_pred CCCHHHHH--HHHHHHHCCCC-EEEEEECCCCCCC
Q ss_conf 64047799--99998622365-6999973895515
Q gi|254780414|r 231 GGVDSTVA--AFLIYEAIGIN-LTCVLVDHGFMRK 262 (520)
Q Consensus 231 GGVDStV~--A~Ll~kAig~~-l~~vfVD~GllRk 262 (520)
|||-|-|| |.+.|+|.+++ .--==|.+-|||.
T Consensus 328 GGVESLiaHPATMTH~aM~~eAR~~AGI~~~LLRl 362 (383)
T TIGR02080 328 GGVESLIAHPATMTHAAMGPEARAEAGISDTLLRL 362 (383)
T ss_pred CCHHHHHCHHHCCCCHHHHHHHHHHCCCCCCCCEE
T ss_conf 55123333010126021018989745841142000
No 460
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.64 E-value=48 Score=13.39 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCC---
Q ss_conf 444036640564047799999986223--656999973895515627899998862369857997588999999668---
Q gi|254780414|r 221 GNERVICAVSGGVDSTVAAFLIYEAIG--INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKN--- 295 (520)
Q Consensus 221 g~~kVi~~lSGGVDStV~A~Ll~kAig--~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~g--- 295 (520)
++-+++....+.-|..-+...+...+- +++.+||.-|..|-.+=.+.+.+.-+. -.+.+.-.|.....+..++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~pd~~ai~~~nD~~A~Ga~~al~~~g~~-~di~vvG~D~~~~~~~~i~~g~~ 230 (275)
T cd06320 152 SGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQ-GKVLVVGTDGIPEAYKSIRAGEL 230 (275)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCC-CCEEEEEECCCHHHHHHHHCCCC
T ss_conf 99835643155303899999999988628766779966988999999999976999-98299998976999999864996
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999887565899999999
Q gi|254780414|r 296 IVDPETKRKVIGQLFIEVFEEEA 318 (520)
Q Consensus 296 v~DPE~KRkiIG~~Fi~vf~~~a 318 (520)
..--.+...-+|..=++...+..
T Consensus 231 ~~tv~q~~~~~G~~av~~l~~~l 253 (275)
T cd06320 231 TATVDSFPALIGEVAMEVMLRAL 253 (275)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH
T ss_conf 69981799999999999999997
No 461
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=23.57 E-value=38 Score=14.13 Aligned_cols=35 Identities=6% Similarity=0.158 Sum_probs=19.4
Q ss_pred EEEEECCCCHHHH-HHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 3664056404779-99999862236569999738955
Q gi|254780414|r 225 VICAVSGGVDSTV-AAFLIYEAIGINLTCVLVDHGFM 260 (520)
Q Consensus 225 Vi~~lSGGVDStV-~A~Ll~kAig~~l~~vfVD~Gll 260 (520)
+|+|-||.--... -.-+++..|.+++..+| |.+-=
T Consensus 212 iilgGp~~~K~~f~~~~~ld~rL~~kVi~~~-Dv~Y~ 247 (403)
T TIGR03676 212 ILIGGPGPTKEEFAEGDYLHHELKKKILGLF-DVSYT 247 (403)
T ss_pred EEECCCCHHHHHHHHCCCCCHHHHHHHHEEE-ECCCC
T ss_conf 9933784176776314553588996503343-04788
No 462
>pfam06483 ChiC Chitinase C. This ~170 aa region is found at the C-terminus of pfam00704.
Probab=23.55 E-value=48 Score=13.38 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHHHHCCCE
Q ss_conf 970578899888865940
Q gi|254780414|r 16 GSQFTQLIARRVRESKVY 33 (520)
Q Consensus 16 GSQytqLIaRriRelgVy 33 (520)
|+.-|.++-.+.+...-|
T Consensus 5 G~TlT~~~y~kF~~A~pY 22 (179)
T pfam06483 5 GSTLTSLAYDKFANATPY 22 (179)
T ss_pred CHHHHHHHHHHHCCCCCC
T ss_conf 305899999986047875
No 463
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=23.39 E-value=49 Score=13.36 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 56589999999974
Q gi|254780414|r 307 GQLFIEVFEEEAKK 320 (520)
Q Consensus 307 G~~Fi~vf~~~a~~ 320 (520)
...|.+-|++.-.+
T Consensus 262 ~~~Fv~~y~~~~g~ 275 (312)
T cd06333 262 ALDFVKAYEAKYGA 275 (312)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998688
No 464
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=23.39 E-value=49 Score=13.36 Aligned_cols=123 Identities=16% Similarity=0.264 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCC--HHHHHHHH--------HH
Q ss_conf 6789999999976504440366405640477999999862236-5699997389551562--78999988--------62
Q gi|254780414|r 206 SSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNE--VENIISLF--------KG 274 (520)
Q Consensus 206 ~~~~~~~i~~Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~-~l~~vfVD~GllRknE--~~~v~~~~--------~~ 274 (520)
-.++-++++.+|++.++++-|.|.+||== |+++.++.-- |. ++.- + .-+|.++. .+++++.+ +.
T Consensus 111 l~~v~eai~~~r~~L~~~~pLIGF~G~Pw-TLasYmieG~-~sk~~~~--~-k~~~~~~p~~~~~ll~~lt~~~~~yl~~ 185 (335)
T cd00717 111 LSYVYEAIKLTRKELPGEVPLIGFAGAPW-TLASYMIEGG-GSKDFAK--A-KKMMYTDPEAFHALLDKLTDATIEYLKA 185 (335)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCHH-HHHHHHHCCC-CCCCHHH--H-HHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56999999999997388887688638769-9999998389-9855799--9-8776138899999999999999999999
Q ss_pred --CCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEECC--CCCHHHHH
Q ss_conf --36985799758899999966898889999887565899999999743997--0998646--22024542
Q gi|254780414|r 275 --YPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGA--QFLGQGT--LYPDVIES 339 (520)
Q Consensus 275 --~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~~~~--~~L~QGT--lypDvIES 339 (520)
.-|.++..+- +--.|.-+|++=++-+-.---+++++.-++.+++ =+.+-|| ++++.-++
T Consensus 186 Qi~aGAd~iqIF------DSwag~L~~~~f~~f~~p~~~~I~~~ik~~~~~vpiI~f~~~~~~~l~~~~~~ 250 (335)
T cd00717 186 QIEAGAQAVQIF------DSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGVPVILFAKGAGGLLEDLAQL 250 (335)
T ss_pred HHHHCCCEEEEC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHC
T ss_conf 998199878850------75202068999999899999999999985289997899768857899999863
No 465
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=23.35 E-value=49 Score=13.35 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=39.0
Q ss_pred EEEECCCCH----HHHHHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 999889705----788998888659406985289898-------899723997999985388999999975376898089
Q gi|254780414|r 11 LIIDFGSQF----TQLIARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESN 79 (520)
Q Consensus 11 lIlDfGSQy----tqLIaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~ 79 (520)
+|=|+..-| .+-|.+..++.|+...+...+.+. +.+...+++|+|++.+.. ...+ ....+.+.+
T Consensus 5 ivp~i~npf~~~~~~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~~~~~----~~~~-~~~~l~~~~ 79 (266)
T cd06282 5 VLPSLANPVFAECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADA----ATSP-ALDLLDAER 79 (266)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC----CCHH-HHHHHHHCC
T ss_conf 97898688999999999999998799899997999979999999999965998799963787----7559-999998559
Q ss_pred CCEEE
Q ss_conf 98899
Q gi|254780414|r 80 IPLLG 84 (520)
Q Consensus 80 iPILG 84 (520)
+|+.-
T Consensus 80 iPvV~ 84 (266)
T cd06282 80 VPYVL 84 (266)
T ss_pred CCEEE
T ss_conf 97899
No 466
>pfam03421 YopJ YopJ Serine/Threonine acetyltransferase. The Yersinia effector YopJ inhibits the innate immune response by blocking MAP kinase and NFkappaB signaling pathways. YopJ is a serine/threonine acetyltransferase which regulates signalling pathways by blocking phosphorylation. This family was previously incorrectly annotated in Pfam as being a peptidase family.
Probab=23.29 E-value=46 Score=13.54 Aligned_cols=22 Identities=36% Similarity=0.803 Sum_probs=19.5
Q ss_pred HHCCCCCEEEEEHHHHHHHHHC
Q ss_conf 6236985799758899999966
Q gi|254780414|r 273 KGYPNFPLRVVDASERFIRKLK 294 (520)
Q Consensus 273 ~~~~~~~l~~vda~~~Fl~~L~ 294 (520)
+++.|+||++.|..+.|+.+||
T Consensus 42 ~r~p~LNL~~f~s~~~~~~alk 63 (178)
T pfam03421 42 QRYPGLNLRFFDSPQEFVQALK 63 (178)
T ss_pred CCCCCCCEEECCCHHHHHHHHH
T ss_conf 3389987220089899999999
No 467
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=23.27 E-value=49 Score=13.34 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=29.1
Q ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf 9765044403664056404779999998622365699997389551562789999886236985799758899999
Q gi|254780414|r 216 IKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIR 291 (520)
Q Consensus 216 Ir~~vg~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~ 291 (520)
-+-+||+-- =+|||=|+-| -|+|=+++- + |..+-.+.-++.++.+ |++ +|...+.+-.
T Consensus 161 ysIaVGSTG-NLGlSIGI~s--------A~lGF~vtV-H-----MSADAr~WKKd~LRs~-gVt--ViEYe~DY~~ 218 (443)
T COG3048 161 YSIAVGSTG-NLGLSIGIMS--------AALGFKVTV-H-----MSADARAWKKDKLRSH-GVT--VVEYEQDYGV 218 (443)
T ss_pred HEEEECCCC-CCCEEHHHHH--------HHHCCEEEE-E-----ECCHHHHHHHHHHHHC-CCE--EEEECCHHHH
T ss_conf 357512567-6530034334--------320625999-9-----5200788889889863-965--9996030668
No 468
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=23.09 E-value=49 Score=13.32 Aligned_cols=48 Identities=38% Similarity=0.567 Sum_probs=31.8
Q ss_pred HHHHHHHH-CCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998862-36985799758899999966898889999887565899999999743
Q gi|254780414|r 267 NIISLFKG-YPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKI 321 (520)
Q Consensus 267 ~v~~~~~~-~~~~~l~~vda~~~Fl~~L~gv~DPE~KRkiIG~~Fi~vf~~~a~~~ 321 (520)
++.++|.- -..-+..+.||.-.|..+|.|+|-|-+.- -+-||.....+
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n-------~~AFe~AV~~i 52 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAAN-------AEAFEAAVAEI 52 (88)
T ss_pred CHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH-------HHHHHHHHHHH
T ss_conf 23877389999984899999999999961788930543-------99999999999
No 469
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=22.88 E-value=50 Score=13.29 Aligned_cols=73 Identities=15% Similarity=0.201 Sum_probs=41.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHH--CCCCEEEE
Q ss_conf 699998897057889988886594069852898988997239979999853889999999753768980--89988997
Q gi|254780414|r 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILE--SNIPLLGI 85 (520)
Q Consensus 9 ~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~--~~iPILGI 85 (520)
||+|+|=-+|-.|-+.--+.=+|--|+.+..+.-..........+.++..|..+ +....-+++.+ -.+|+|=+
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~----~~~~~l~~l~~~~p~~Pvlll 75 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS----GLADLLKALAKWDPHLPVLLL 75 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC----CHHHHHHHHHHHCCCCCEEEE
T ss_conf 989986888999979999986499649954889889886378852999967852----099999999964889999998
No 470
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=22.84 E-value=50 Score=13.28 Aligned_cols=105 Identities=16% Similarity=0.263 Sum_probs=51.3
Q ss_pred HHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHH-----CC-CCEEEEEECCCC-CCCCCHHHHHHHHHH----CCC
Q ss_conf 9999997650--4440366405640477999999862-----23-656999973895-515627899998862----369
Q gi|254780414|r 211 EIVSRIKEQV--GNERVICAVSGGVDSTVAAFLIYEA-----IG-INLTCVLVDHGF-MRKNEVENIISLFKG----YPN 277 (520)
Q Consensus 211 ~~i~~Ir~~v--g~~kVi~~lSGGVDStV~A~Ll~kA-----ig-~~l~~vfVD~Gl-lRknE~~~v~~~~~~----~~~ 277 (520)
..++.|++.. .++.+.+|||||---.-+...|.+. +- .+++.+++|-=+ +-....+.....+++ +.+
T Consensus 19 ~i~~~i~~~~~~~~~~~~i~LsgG~tP~~~y~~L~~~~~~~~i~~~~v~~f~~DEy~gl~~~~~~S~~~~~~~~l~~~v~ 98 (253)
T PTZ00285 19 YIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREGRVSFSNVVTFNMDEYVGLPRDHPQSYHYFMKENFFDHVD 98 (253)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999998665039982999699834999999999998615998579599736322278988845499999999874179
Q ss_pred CCEEEEEHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 8579975889999996689-8889999887565899999999743997099864
Q gi|254780414|r 278 FPLRVVDASERFIRKLKNI-VDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQG 330 (520)
Q Consensus 278 ~~l~~vda~~~Fl~~L~gv-~DPE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QG 330 (520)
+ ..+..+ .+.|- .|||+- .+-+++..++.++.++..-|
T Consensus 99 i-----p~~~i~--~~~~~~~d~~~~--------~~~ye~~i~~~ggiDl~lLG 137 (253)
T PTZ00285 99 I-----KEENRH--ILNGTAPDLEEE--------CRRYEEKIRAVGGIDLFLAG 137 (253)
T ss_pred C-----CHHHEE--CCCCCCCCHHHH--------HHHHHHHHHHHCCCCEEEEE
T ss_conf 9-----799877--789998799999--------99999999972898789981
No 471
>KOG2275 consensus
Probab=22.82 E-value=45 Score=13.58 Aligned_cols=255 Identities=15% Similarity=0.081 Sum_probs=108.7
Q ss_pred ECHHHHH-HHHHCCCEEEECCCCCCCEEEE--EECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCEEECCCCCCEE
Q ss_conf 7789999-8997096999869866103667--523886222787266553368600220110124442112323983178
Q gi|254780414|r 85 ICYGQQI-MCQSLGGKTKNSQSREFGRAFI--EIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFA 161 (520)
Q Consensus 85 ICyG~Ql-La~~~GG~V~~~~~~EyG~~~I--~i~~~~~lf~gl~~~~~~~~VwmSH~D~V~~lP~gf~viA~S~~~~ia 161 (520)
.|.-++. .|+.+|=.+.. -..+.|.-.+ .+...++ .....+.|||.|.| |.... +=..-|++
T Consensus 49 a~~~Fl~~~a~~l~l~~~~-i~~~p~~~~~l~T~~GS~P--------~L~silL~SH~DVV---P~f~e---~W~h~Pfs 113 (420)
T KOG2275 49 ACADFLKKYAKSLGLTVQK-IESEPGKYVLLYTWLGSDP--------ELPSILLNSHTDVV---PVFRE---KWTHPPFS 113 (420)
T ss_pred HHHHHHHHHHHHCCCCEEE-EEECCCEEEEEEEEECCCC--------CCCCEEEECCCCCC---CCCCC---CCCCCCCC
T ss_conf 8999999998864875058-8852753689999527997--------76633664245535---88766---67669864
Q ss_pred EEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCHHHHH
Q ss_conf 89863500112465212221520257799875501064411140678999999997650444---036640564047799
Q gi|254780414|r 162 FIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNE---RVICAVSGGVDSTVA 238 (520)
Q Consensus 162 ai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~---kVi~~lSGGVDStV~ 238 (520)
|.+..+.+||| .|.+ +|++..-+.++.||.---++ +=-+.+|=|+|--+-
T Consensus 114 a~~~~~g~Iya-----------RGaq----------------D~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~ 166 (420)
T KOG2275 114 AFKDEDGNIYA-----------RGAQ----------------DMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIG 166 (420)
T ss_pred CCCCCCCCEEE-----------CCCC----------------CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHCC
T ss_conf 56567886772-----------3665----------------00768999999999998658776733899963760115
Q ss_pred ----HHHHHH--HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCC--HHHHHHHHHHHH
Q ss_conf ----999986--223656999973895515627899998862369857997588999999668988--899998875658
Q gi|254780414|r 239 ----AFLIYE--AIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD--PETKRKVIGQLF 310 (520)
Q Consensus 239 ----A~Ll~k--Aig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~D--PE~KRkiIG~~F 310 (520)
+....+ -.++-=...-+|-|.--.+....|--.=|...++.+..-- -.|... |+.----+=..+
T Consensus 167 G~~Gm~~fa~~~~~~~l~~~filDEG~~se~d~~~vfyaEkg~w~~~v~~~G--------~~GHss~~~~nTa~~~l~kl 238 (420)
T KOG2275 167 GHIGMKEFAKTEEFKKLNLGFILDEGGATENDFATVFYAEKGPWWLKVTANG--------TPGHSSYPPPNTAIEKLEKL 238 (420)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECEEEEEEEECC--------CCCCCCCCCCCCHHHHHHHH
T ss_conf 7226888753666356662689358988754313678885221689999447--------89877878984389999999
Q ss_pred HHHH----HHHHH---HCCCCEEEEECCCCCHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999----99997---4399709986462202454202467776303443023201132032022378987389999999
Q gi|254780414|r 311 IEVF----EEEAK---KIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLG 383 (520)
Q Consensus 311 i~vf----~~~a~---~~~~~~~L~QGTlypDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdEVR~lg 383 (520)
|+.+ ++... +......+-+-|+-.+.|+.|. ++.++-.++-. --++.+...+++..+++.=..+.+
T Consensus 239 v~~~~~fr~~q~~~l~~~p~~~~~~vtT~Nv~~i~GGv----~~N~~P~~~ea---~~dirv~~~~d~~~i~~~l~~~w~ 311 (420)
T KOG2275 239 VESLEEFREKQVDLLASGPKLALGDVTTINVGIINGGV----QSNVLPETFEA---AFDIRVRPHVDVKAIRDQLEDEWA 311 (420)
T ss_pred HHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEEECCC----CCCCCCHHHEE---EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99999868877787604973110562688643540551----24767654313---322673157887999998887765
Q ss_pred HHHCCCHHHHCCC
Q ss_conf 9819998894268
Q gi|254780414|r 384 KELRLPDSFVERH 396 (520)
Q Consensus 384 ~~Lglp~~~~~Rh 396 (520)
.+-|-.-.+-.-+
T Consensus 312 ~~~~eg~t~~f~~ 324 (420)
T KOG2275 312 EEAGEGVTLEFSQ 324 (420)
T ss_pred HHCCCCEEEECCC
T ss_conf 4127735785467
No 472
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=22.78 E-value=50 Score=13.27 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=8.7
Q ss_pred HHHCCCCEEEECHHHH
Q ss_conf 9808998899778999
Q gi|254780414|r 75 ILESNIPLLGICYGQQ 90 (520)
Q Consensus 75 I~~~~iPILGICyG~Q 90 (520)
.-+.++|++..+-+..
T Consensus 86 ~~~~~ip~i~~~~~~~ 101 (298)
T cd06268 86 AEEAGVPLISPGATSP 101 (298)
T ss_pred HHHCCCEEEECCCCCH
T ss_conf 9871921880575425
No 473
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=22.54 E-value=51 Score=13.24 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=11.7
Q ss_pred EEECCCCEEEEEEEEHHHCCCHHHHHHHH
Q ss_conf 98635001124652122215202577998
Q gi|254780414|r 163 IADEKRKYYAVQFHPEVVHTVGGSQLIDN 191 (520)
Q Consensus 163 i~~~~~~iyGVQFHPEV~hT~~G~~iL~N 191 (520)
++.-+-.+.|+-|=-|+.. ..|.++++-
T Consensus 199 ~~~~ga~v~G~~~li~~~~-~~~~~~~e~ 226 (238)
T PRK08558 199 CRQAGADVVGVFFLIAVGD-VGIDRLREE 226 (238)
T ss_pred HHHCCCEEEEEEEEEECCC-HHHHHHHHH
T ss_conf 9986997999999998473-377888876
No 474
>KOG4328 consensus
Probab=22.52 E-value=51 Score=13.24 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEECCCCEEEEEEEEHHHC------CCHHHHHHHHH
Q ss_conf 89863500112465212221------52025779987
Q gi|254780414|r 162 FIADEKRKYYAVQFHPEVVH------TVGGSQLIDNF 192 (520)
Q Consensus 162 ai~~~~~~iyGVQFHPEV~h------T~~G~~iL~NF 192 (520)
-++...++|+.+||||--.- ...|...|=||
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~ 217 (498)
T KOG4328 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNF 217 (498)
T ss_pred EEEECCCCEEEEEECCCCCCEEEEECCCCCCEEEEEC
T ss_conf 5674056257888635686118997157772778766
No 475
>pfam07796 DUF1638 Protein of unknown function (DUF1638). This family contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins. These proteins are expressed by archaeal species of the Methanosarcina genus.
Probab=22.50 E-value=51 Score=13.24 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
Q ss_conf 236569999738955156278999988623698579975889999996
Q gi|254780414|r 246 IGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKL 293 (520)
Q Consensus 246 ig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L 293 (520)
.|.=-..++||||+---.+.++-.+.+...+|+++..++-+...|+++
T Consensus 115 f~~Y~rv~~i~tg~~~~~~~~~~a~~~A~~lgl~~e~~~~~~g~L~~~ 162 (166)
T pfam07796 115 FGHYRKVVYIDTGLYQTDDFEAKAREFADRLGLEFEERPGGYGDLEIL 162 (166)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf 827867999817998767799999999998399779985899999998
No 476
>cd03556 L-fucose_isomerase L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants.
Probab=22.48 E-value=51 Score=13.23 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECC----CCCHHHHHHH
Q ss_conf 2237898738999999998199988942688898311122100----0367899999
Q gi|254780414|r 367 LVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIG----EITEERINIL 419 (520)
Q Consensus 367 liEPl~~l~KdEVR~lg~~Lglp~~~~~RhPFPGPGLaiRi~g----~vt~e~~~i~ 419 (520)
.+-|.-++-.+|+.+.=..---+... +-=|+|-|++-|-+- .+|--|++++
T Consensus 406 ~mKp~weiteed~~~cL~aT~w~pA~--~eYFrGGGfSs~F~T~g~mP~Tm~R~Nlv 460 (584)
T cd03556 406 TMKEFWNLTEEDVQACLAATDWCPAN--REYFRGGGFSSRFLTEGEMPVTMIRLNLI 460 (584)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCHH--CCCCCCCCCCCCCCCCCCCCEEEEEEHHH
T ss_conf 56775547999999999728326200--15565897555520478973233101023
No 477
>TIGR03174 cas_Csc3 CRISPR-associated protein Csc3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Probab=22.30 E-value=36 Score=14.27 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=31.0
Q ss_pred EECCCCHH---HHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCHH
Q ss_conf 40564047---799999986223-65699997389551562789999886236985799758899999966898889
Q gi|254780414|r 228 AVSGGVDS---TVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPE 300 (520)
Q Consensus 228 ~lSGGVDS---tV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv~DPE 300 (520)
+.||||-- .+||.++++--+ ... | .+.+++.+.+......=+.-.+..+.|.++..+++.+.
T Consensus 395 ~~sGGv~~~wY~iAa~yl~~h~~~~~i----------~-~~~~eii~~l~~l~~~l~s~~~~~d~~~~~~~~p~~e~ 460 (953)
T TIGR03174 395 GNSGGVWYYWYAIAAHYLDRHPGGESV----------T-WDIQEVIEYLQGLGDRLASQSAEEEGYFAAHLSPTRQI 460 (953)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCC----------C-CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHH
T ss_conf 155873449999999999848886644----------4-57999999999999987653312011024443832789
No 478
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.20 E-value=24 Score=15.56 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=24.7
Q ss_pred HHHHHHHCCC-CEEEEECCCCHHHHHHHHH-HHHC-CCCEEE
Q ss_conf 9997650444-0366405640477999999-8622-365699
Q gi|254780414|r 214 SRIKEQVGNE-RVICAVSGGVDSTVAAFLI-YEAI-GINLTC 252 (520)
Q Consensus 214 ~~Ir~~vg~~-kVi~~lSGGVDStV~A~Ll-~kAi-g~~l~~ 252 (520)
-.|-++|... |.+|.||+|.||++.+-|. ..|+ .-||+.
T Consensus 16 ~~iEe~vD~Qykav~~l~~~~~~~~~vrlaianaLvSYqLtg 57 (243)
T COG4047 16 LFIEENVDPQYKAVSYLSKGIGSTKFVRLAIANALVSYQLTG 57 (243)
T ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 556861378999999998216812779999999999886256
No 479
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=22.20 E-value=51 Score=13.20 Aligned_cols=89 Identities=16% Similarity=0.330 Sum_probs=55.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEECCC-CCCCCCCCCCCCCHHHHH--CCCCE
Q ss_conf 8869999889705788998888659406985289-8988997239979999853-889999999753768980--89988
Q gi|254780414|r 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFK-NALDYFKEQNPQAIILSGS-PASSLDIDSPQIPKEILE--SNIPL 82 (520)
Q Consensus 7 ~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~-~~~e~i~~~~p~GIILSGG-P~SV~d~~ap~~~~~I~~--~~iPI 82 (520)
+.+|||+|=-....++|...++..|..+.....- ...+.+....|+-|||-=+ | +.+...+-+++-+ .++||
T Consensus 3 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP----~~~G~~l~~~iR~~~~~~pI 78 (229)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLP----DISGFELCRQLRAFHPALPV 78 (229)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCC----CCCHHHHHHHHHHHCCCCEE
T ss_conf 99999996999999999999998899999989999999999718998999738899----98768899999970899729
Q ss_pred EEECH-H---HHHHHHHCCCE
Q ss_conf 99778-9---99989970969
Q gi|254780414|r 83 LGICY-G---QQIMCQSLGGK 99 (520)
Q Consensus 83 LGICy-G---~QlLa~~~GG~ 99 (520)
+=+.- + ..+.+...|+.
T Consensus 79 I~lta~~~~~d~i~~l~~GAD 99 (229)
T PRK11083 79 IFLTARSDEVDRLVGLEIGAD 99 (229)
T ss_pred EEEECCCCHHHHHHHHHCCCC
T ss_conf 998367898999999975998
No 480
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=22.16 E-value=51 Score=13.19 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 998875658999999997439
Q gi|254780414|r 302 KRKVIGQLFIEVFEEEAKKIG 322 (520)
Q Consensus 302 KRkiIG~~Fi~vf~~~a~~~~ 322 (520)
-|.|-|.-||++||+-...+.
T Consensus 152 vr~IYG~dFm~ife~s~~~ie 172 (190)
T PRK13777 152 LRNIYGQDFIDIFEKSLEDIE 172 (190)
T ss_pred HHHHCCHHHHHHHHHHHHHHH
T ss_conf 999816379999999998887
No 481
>COG1647 Esterase/lipase [General function prediction only]
Probab=22.16 E-value=51 Score=13.19 Aligned_cols=163 Identities=19% Similarity=0.196 Sum_probs=70.4
Q ss_pred EEEEEECCCHHHCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 36860022011012444211232398317889863500112465212221520257799875501064411140678999
Q gi|254780414|r 132 QQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKE 211 (520)
Q Consensus 132 ~~VwmSH~D~V~~lP~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~ 211 (520)
.-|..-||.. .-|.+++.+|+.-+-. ++ -+|+=||- -|.... +-|+ +-++++..++
T Consensus 16 ~AVLllHGFT--Gt~~Dvr~Lgr~L~e~--Gy-----Tv~aP~yp---GHG~~~----e~fl--------~t~~~DW~~~ 71 (243)
T COG1647 16 RAVLLLHGFT--GTPRDVRMLGRYLNEN--GY-----TVYAPRYP---GHGTLP----EDFL--------KTTPRDWWED 71 (243)
T ss_pred EEEEEEECCC--CCCHHHHHHHHHHHHC--CC-----EEECCCCC---CCCCCH----HHHH--------CCCHHHHHHH
T ss_conf 7999983368--9808899999999878--95-----57468889---999998----9985--------0799999999
Q ss_pred HHHH---HHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCHHHH---HHHH---HHCCCCCE
Q ss_conf 9999---976504440366405-64047799999986223-656999973895515627899---9988---62369857
Q gi|254780414|r 212 IVSR---IKEQVGNERVICAVS-GGVDSTVAAFLIYEAIG-INLTCVLVDHGFMRKNEVENI---ISLF---KGYPNFPL 280 (520)
Q Consensus 212 ~i~~---Ir~~vg~~kVi~~lS-GGVDStV~A~Ll~kAig-~~l~~vfVD~GllRknE~~~v---~~~~---~~~~~~~l 280 (520)
.... ++++-=++-.+|||| |||=|.- |..-.. +++ |+.-.+.-++.+..-+ ++.+ ++..+.+
T Consensus 72 v~d~Y~~L~~~gy~eI~v~GlSmGGv~alk----la~~~p~K~i--v~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~- 144 (243)
T COG1647 72 VEDGYRDLKEAGYDEIAVVGLSMGGVFALK----LAYHYPPKKI--VPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKD- 144 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCHHHHHHH----HHHHCCCCCE--EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-
T ss_conf 999999998757985899851203699999----9853795523--640477665541034578999999856514889-
Q ss_pred EEEEHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 997588999999668988-899998875658999999997439970998646
Q gi|254780414|r 281 RVVDASERFIRKLKNIVD-PETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGT 331 (520)
Q Consensus 281 ~~vda~~~Fl~~L~gv~D-PE~KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGT 331 (520)
++.+=+.++..+| |..--+- =..||+-.-+...++.-..+.+||-
T Consensus 145 -----~e~~~~e~~~~~~~~~~~~~~-~~~~i~~~~~~~~~I~~pt~vvq~~ 190 (243)
T COG1647 145 -----QEQIDKEMKSYKDTPMTTTAQ-LKKLIKDARRSLDKIYSPTLVVQGR 190 (243)
T ss_pred -----HHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHHHHHCCCCHHHEECC
T ss_conf -----899999999841360779999-9999999874365630144204415
No 482
>cd06950 NR_LBD_Tlx_PNR_like The ligand binding domain of Tailless-like proteins, orphan nuclear receptors. The ligand binding domain of the photoreceptor cell-specific nuclear receptor (PNR) like family: This family includes photoreceptor cell-specific nuclear receptor (PNR), Tailless (TLX), and related receptors. TLX is an orphan receptor that is expressed by neural stem/progenitor cells in the adult brain of the subventricular zone (SVZ) and the dentate gyrus (DG). It plays a key role in neural development by promoting cell cycle progression and preventing apoptosis in the developing brain. PNR is expressed only in the outer layer of retinal photoreceptor cells. It may be involved in the signaling pathway regulating photoreceptor differentiation and/or maintenance. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, TLX and PNR have a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge
Probab=22.15 E-value=18 Score=16.53 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=20.8
Q ss_pred EEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 5212221520257799875501064411140678999999997650
Q gi|254780414|r 175 FHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQV 220 (520)
Q Consensus 175 FHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~v 220 (520)
=-||... +-+.++|--.+ +-++.-+.++.=. .++++.-+|.--
T Consensus 26 ~~~e~ic-e~A~r~L~~~V-~WAK~lP~F~~L~-~~DQi~LLk~sW 68 (206)
T cd06950 26 VSPESVC-ESAARLLFMAV-KWAKSIPAFSTLP-FRDQLILLEESW 68 (206)
T ss_pred CCHHHHH-HHHHHHHHHHH-HHHHCCCCCCCCC-HHHHHHHHHHHH
T ss_conf 8989999-99999999999-9984098810289-889999999976
No 483
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=22.14 E-value=51 Score=13.19 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=10.7
Q ss_pred CCCCCCCC---HHHHHCCCCEEEE
Q ss_conf 99997537---6898089988997
Q gi|254780414|r 65 DIDSPQIP---KEILESNIPLLGI 85 (520)
Q Consensus 65 d~~ap~~~---~~I~~~~iPILGI 85 (520)
+++-+.+. ++|.+.+.|+--.
T Consensus 50 ~~Dl~~IE~~m~~iik~~~~~~r~ 73 (576)
T PRK12305 50 ESDLLKIEKLMKKLASQNLKMVKV 73 (576)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899999999999998589987983
No 484
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=22.08 E-value=52 Score=13.18 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=45.2
Q ss_pred CCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEE-CCCC-CHHHHHHCCC--CEEEECCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 488699998897057--88998888659406985-2898-9889972399--7999985388999999975376898089
Q gi|254780414|r 6 RSSKVLIIDFGSQFT--QLIARRVRESKVYCEVI-AFKN-ALDYFKEQNP--QAIILSGSPASSLDIDSPQIPKEILESN 79 (520)
Q Consensus 6 ~~~~IlIlDfGSQyt--qLIaRriRelgVyseI~-P~~~-~~e~i~~~~p--~GIILSGGP~SV~d~~ap~~~~~I~~~~ 79 (520)
+.++|.++-.|+.|. +-.++++.+++..+... +... ........++ --|++|-+.. ..+.....+.+-+.+
T Consensus 4 ~a~rI~~~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~---t~~~~~~~~~a~~~g 80 (131)
T pfam01380 4 KAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAISQSGE---TRDLLEAAKLLKARG 80 (131)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCCCCEEEEECCCCC---CHHHHHHHHHHHHCC
T ss_conf 78989999932699999999999998689877863658866067567999999999548986---576898789999849
Q ss_pred CCEEEEC-HHHHHHHH
Q ss_conf 9889977-89999899
Q gi|254780414|r 80 IPLLGIC-YGQQIMCQ 94 (520)
Q Consensus 80 iPILGIC-yG~QlLa~ 94 (520)
.|+++|| ...=-|++
T Consensus 81 ~~~i~iT~~~~S~la~ 96 (131)
T pfam01380 81 AKIIAITDSKGSPLAR 96 (131)
T ss_pred CEEEEEECCCCCHHHH
T ss_conf 9699998999997899
No 485
>pfam09949 DUF2183 Uncharacterized conserved protein (DUF2183). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=21.98 E-value=52 Score=13.17 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 20257799875501064411140--6789999999976504440-36640564047799999986223656999973
Q gi|254780414|r 183 VGGSQLIDNFVHHVAGIQDNWVM--SSYHKEIVSRIKEQVGNER-VICAVSGGVDSTVAAFLIYEAIGINLTCVLVD 256 (520)
Q Consensus 183 ~~G~~iL~NFl~~Ic~~~~~W~~--~~~~~~~i~~Ir~~vg~~k-Vi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD 256 (520)
+.|..+|++|-. .....++. .+.....+++|-+.-.+.| |+.|=||-=|-..-|.+..+- .+|..||||-
T Consensus 26 P~G~l~Lr~~~~---~~~~~~~~~~~~hK~~~i~~il~~fP~~kfiLiGDsgq~DpeiY~~ia~~~-P~rI~aI~IR 98 (100)
T pfam09949 26 PPGPLLLRDWGP---SLLGFFRSGAQSHKRDAIERILRDFPDRKFILIGDSGQHDPEIYAEIAREF-PGRILAIYIR 98 (100)
T ss_pred CCCCEEHHCCCC---CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCEEEEEEE
T ss_conf 998550512886---546552687425639999999997889708995688776999999999979-7558999984
No 486
>pfam02614 UxaC Glucuronate isomerase. This is a family of Glucuronate isomerases also known as D-glucuronate isomerase, uronic isomerase, uronate isomerase, or uronic acid isomerase, EC:5.3.1.12. This enzyme catalyses the reactions: D-glucuronate <= D-fructuronate and D-galacturonate <= D-tagaturonate. It is not however clear where the experimental evidence for this functional assignment came from and thus this family has no literature reference.
Probab=21.97 E-value=52 Score=13.17 Aligned_cols=204 Identities=17% Similarity=0.180 Sum_probs=109.4
Q ss_pred CCCCEEECCCCCCEEEEEECCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 44211232398317889863500112465212221520257799875501064411140678999999997650444036
Q gi|254780414|r 147 EGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVI 226 (520)
Q Consensus 147 ~gf~viA~S~~~~iaai~~~~~~iyGVQFHPEV~hT~~G~~iL~NFl~~Ic~~~~~W~~~~~~~~~i~~Ir~~vg~~kVi 226 (520)
++|..-+-=+...|+.+.-.+-|+=-+++|-+.... ++| + ++.-|+|.|+..++-.-..-++-+. -|
T Consensus 133 ~~f~pr~Ll~~~nVe~lcTTDDP~DdL~~H~~ia~d-------~~~--~-~rV~PtFRPDkal~i~~~~f~~~v~---kL 199 (465)
T pfam02614 133 PDFRPRALIKQSNVEVVCTTDDPIDDLEYHKALAED-------ESF--S-VKVLPTFRPDKALKIENEGFADYVE---KL 199 (465)
T ss_pred CCCCHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHC-------CCC--C-CEEEECCCCCCCCCCCCHHHHHHHH---HH
T ss_conf 898799999976917998079986567999999837-------899--9-5586242576444878455999999---99
Q ss_pred EEECC-CCH--HHHHHHHHHH-HCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCC-CCHHH
Q ss_conf 64056-404--7799999986-2236569999738955156278999988623698579975889999996689-88899
Q gi|254780414|r 227 CAVSG-GVD--STVAAFLIYE-AIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNI-VDPET 301 (520)
Q Consensus 227 ~~lSG-GVD--StV~A~Ll~k-Aig~~l~~vfVD~GllRknE~~~v~~~~~~~~~~~l~~vda~~~Fl~~L~gv-~DPE~ 301 (520)
..+|| .++ .....||-.| +-=.+.=|..-||||-.- .-.++...+|...|-++++|- -.+|+
T Consensus 200 ~~~sg~~i~s~~~~l~AL~~R~~~F~~~Gcr~SDHGl~~~-------------~~~~~s~~ea~~if~ka~~G~~lt~~E 266 (465)
T pfam02614 200 GEVSGIDITSFDDFLEALRKRIDFFHEHGCRSSDHGLDTV-------------VYAEASEEEADAIFDKALAGETLTPEE 266 (465)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC-------------CCCCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 9986888678999999999999999986897632689866-------------678899999999999997599989999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC---CHHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99887565899999999743997099864622---024542024677763034430232011320320223789873899
Q gi|254780414|r 302 KRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLY---PDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDE 378 (520)
Q Consensus 302 KRkiIG~~Fi~vf~~~a~~~~~~~~L~QGTly---pDvIES~~~~~~~~~~IKsHHNvgglp~~~~~~liEPl~~l~KdE 378 (520)
..+--+..+++.....+++ +=+-=|--|.+. +.+-+.-+...|. + --......++|+.|+-
T Consensus 267 ~~~f~~~~l~~la~~y~e~-gwvmQlH~Ga~RN~n~~~~~~lG~D~G~-D------------~i~d~~~a~~L~~lLd-- 330 (465)
T pfam02614 267 IEKFKTATLYELARLYAER-GWVMQLHIGALRNNNTRMFKKLGPDTGF-D------------SIGDFPIAEALSRLLD-- 330 (465)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHCCCCCC-C------------CCCCHHHHHHHHHHHH--
T ss_conf 9999999999999999877-9722332554556799999973899984-8------------8898789999999999--
Q ss_pred HHHHHHHHCCCHHHHC
Q ss_conf 9999998199988942
Q gi|254780414|r 379 VRLLGKELRLPDSFVE 394 (520)
Q Consensus 379 VR~lg~~Lglp~~~~~ 394 (520)
++++.-.||.-+++
T Consensus 331 --~l~~~~~LpktIly 344 (465)
T pfam02614 331 --ALDEKDRLPKTILY 344 (465)
T ss_pred --HHCCCCCCCEEEEE
T ss_conf --84376898704677
No 487
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=21.86 E-value=50 Score=13.27 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH-------------CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8999999997650-------------444036640564047799999986223656999973
Q gi|254780414|r 208 YHKEIVSRIKEQV-------------GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVD 256 (520)
Q Consensus 208 ~~~~~i~~Ir~~v-------------g~~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD 256 (520)
-+++.++-||+.| |+++++.=|-|=-|..-+--++.+. -+|.--.||
T Consensus 231 Av~Q~ieilRnRVdeLGVsEP~IQrQG~dRIvVqLPGvqD~~rAk~iLG~T--A~LeFr~V~ 290 (604)
T PRK12933 231 TVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGAT--ASLAFYEVK 290 (604)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCC--CEEEEEECC
T ss_conf 999999999976530067887179977957999889999999999986346--448999746
No 488
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=21.84 E-value=52 Score=13.15 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=40.8
Q ss_pred EEEEECCCCHHHH----HHHHHHHCCCEEEEECCCCCH-------HHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9999889705788----998888659406985289898-------89972399799998538899999997537689808
Q gi|254780414|r 10 VLIIDFGSQFTQL----IARRVRESKVYCEVIAFKNAL-------DYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES 78 (520)
Q Consensus 10 IlIlDfGSQytqL----IaRriRelgVyseI~P~~~~~-------e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~ 78 (520)
|+|=|+...|.-. |....++.|+...+...+.+. +.+...+++|||+.+... .+.....+.+.
T Consensus 4 vivp~l~npff~~l~~gi~~~~~~~gy~~~i~~s~~d~~~e~~~i~~l~~~~vDGiIi~~~~~------~~~~~~~l~~~ 77 (268)
T cd01575 4 VLVPSLSNSVFADVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEH------TERTRQLLRAA 77 (268)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHC
T ss_conf 998998788999999999999998699999997899989999999999956999999943779------98999999977
Q ss_pred CCCEE
Q ss_conf 99889
Q gi|254780414|r 79 NIPLL 83 (520)
Q Consensus 79 ~iPIL 83 (520)
++|+.
T Consensus 78 ~iPvV 82 (268)
T cd01575 78 GIPVV 82 (268)
T ss_pred CCCEE
T ss_conf 99699
No 489
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=21.83 E-value=52 Score=13.15 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=16.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 44886999988970578899888865940698
Q gi|254780414|r 5 ERSSKVLIIDFGSQFTQLIARRVRESKVYCEV 36 (520)
Q Consensus 5 ~~~~~IlIlDfGSQytqLIaRriRelgVyseI 36 (520)
.+..+|..|-. |....|+-+.+.|+...+
T Consensus 13 ~~g~ki~~lTa---yd~~~A~~~d~agiD~iL 41 (261)
T pfam02548 13 GEGEKIVMLTA---YDYPTARLADEAGVDVIL 41 (261)
T ss_pred HCCCCEEEEEE---CCHHHHHHHHHCCCCEEE
T ss_conf 48995799982---899999999985998899
No 490
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.81 E-value=52 Score=13.14 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCHHH-------HHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEEE
Q ss_conf 70578899888865940698528989889-------9723997999985388999999975376898089988997
Q gi|254780414|r 17 SQFTQLIARRVRESKVYCEVIAFKNALDY-------FKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGI 85 (520)
Q Consensus 17 SQytqLIaRriRelgVyseI~P~~~~~e~-------i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILGI 85 (520)
++..+-|.+..++.|....+...+...++ +...+++|||+++ ..........+.+.++|+.-+
T Consensus 19 ~~l~~gie~~~~~~Gy~lll~~~~~~~~~~~~~~~~l~~~~vDGiIl~~------~~~~~~~~~~l~~~~iP~V~~ 88 (268)
T cd06271 19 AEFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISR------TRPDDPRVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC------CCCCHHHHHHHHHCCCCEEEE
T ss_conf 9999999999998499899995899989999999999848988899967------889819999999779999997
No 491
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=21.79 E-value=50 Score=13.27 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEECCCCH
Q ss_conf 863448869999889705
Q gi|254780414|r 2 HKRERSSKVLIIDFGSQF 19 (520)
Q Consensus 2 ~~~~~~~~IlIlDfGSQy 19 (520)
++..+..-++.+|+|+||
T Consensus 76 ~~~i~~gdlvLiD~G~~Y 93 (224)
T cd01085 76 NRKISPDGLYLIDSGGQY 93 (224)
T ss_pred CCCCCCCCEEEECCCCCC
T ss_conf 733368983677279225
No 492
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.78 E-value=52 Score=13.14 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 889972399799998538899999997537689808998899
Q gi|254780414|r 43 LDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLG 84 (520)
Q Consensus 43 ~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~~iPILG 84 (520)
++.....+|+|||+.|-+. .......+..-+.+||+.|
T Consensus 49 i~~ai~~k~D~Iii~~~D~----~~~~~~l~~A~~agIPvv~ 86 (280)
T cd06315 49 LNQAIALKPDGIVLGGVDA----AELQAELELAQKAGIPVVG 86 (280)
T ss_pred HHHHHHCCCCEEEECCCCH----HHHHHHHHHHHHCCCCEEE
T ss_conf 9999963999999998297----8878999999987997896
No 493
>KOG2011 consensus
Probab=21.66 E-value=41 Score=13.92 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9987550106441114067899999999
Q gi|254780414|r 189 IDNFVHHVAGIQDNWVMSSYHKEIVSRI 216 (520)
Q Consensus 189 L~NFl~~Ic~~~~~W~~~~~~~~~i~~I 216 (520)
|-||+++.|||++.-+...+.+..-..|
T Consensus 116 linf~l~~cGck~~Vt~~~v~~~ds~~i 143 (1048)
T KOG2011 116 LINFFLQCCGCKGRVTDFDVQDVDSSSI 143 (1048)
T ss_pred HHHHHHHHCCCCCCCCHHHHCCCCCHHH
T ss_conf 9999999628866167887044432178
No 494
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=21.61 E-value=53 Score=13.11 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHCCCEEEEECCCCC---------HHHHHHCCCCEEE-ECCCCCCCCCCCCCCCCHHHHHCCCCEE
Q ss_conf 9888865940698528989---------8899723997999-9853889999999753768980899889
Q gi|254780414|r 24 ARRVRESKVYCEVIAFKNA---------LDYFKEQNPQAII-LSGSPASSLDIDSPQIPKEILESNIPLL 83 (520)
Q Consensus 24 aRriRelgVyseI~P~~~~---------~e~i~~~~p~GII-LSGGP~SV~d~~ap~~~~~I~~~~iPIL 83 (520)
++.++|.|+.|+.+..-.. .+.|...+++-|| ++.+-..-.+.+...+.....+.++|.+
T Consensus 36 a~~l~~~Gi~~~~v~k~~e~~~~~~p~i~d~i~~g~i~lVINtp~~~~~~~~~~g~~iRr~Av~~~Ip~~ 105 (116)
T cd01423 36 ADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 9999986996579878624678999669999976986899988899986433545899999997599989
No 495
>smart00427 H2B Histone H2B.
Probab=21.57 E-value=44 Score=13.71 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=0.0
Q ss_pred EEEEHHHCCCHHHHHHHHHHHHH
Q ss_conf 65212221520257799875501
Q gi|254780414|r 174 QFHPEVVHTVGGSQLIDNFVHHV 196 (520)
Q Consensus 174 QFHPEV~hT~~G~~iL~NFl~~I 196 (520)
|-||...-|.....|+..|+.++
T Consensus 13 qVhp~~giS~kam~imnsfv~di 35 (89)
T smart00427 13 QVHPDTGISSKAMSIMNSFVNDI 35 (89)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 00899985799999999999999
No 496
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=21.56 E-value=51 Score=13.23 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHC-----CCCEEEECHHHHHHHHHC
Q ss_conf 99888865940698528989889972399799998538899999997537689808-----998899778999989970
Q gi|254780414|r 23 IARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILES-----NIPLLGICYGQQIMCQSL 96 (520)
Q Consensus 23 IaRriRelgVyseI~P~~~~~e~i~~~~p~GIILSGGP~SV~d~~ap~~~~~I~~~-----~iPILGICyG~QlLa~~~ 96 (520)
|.|.+|-+-+.-+|. +.+.+..|++.+| +.-.....+-+. ++++.|+|-|.|-+.+.+
T Consensus 114 ~~~alRtiP~~l~ia------~~i~e~cP~Awli----------NytNP~~ivt~a~~r~~~~k~vGlCh~~~~~~~~l 176 (419)
T cd05296 114 FAKALRTIPVILDIA------EDVEELAPDAWLI----------NFTNPAGIVTEAVLRHTGDRVIGLCNVPIGLQRRI 176 (419)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHCCCCEEE----------ECCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 998762289999999------9999869983899----------73787999999999668998899797779899999
No 497
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.35 E-value=45 Score=13.61 Aligned_cols=27 Identities=30% Similarity=0.634 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 56589999999974399709986462202
Q gi|254780414|r 307 GQLFIEVFEEEAKKIGGAQFLGQGTLYPD 335 (520)
Q Consensus 307 G~~Fi~vf~~~a~~~~~~~~L~QGTlypD 335 (520)
|..-|++.+++.+.. ++-+-|+.||||
T Consensus 75 g~elI~e~De~vr~~--vei~te~~i~~d 101 (156)
T COG4077 75 GVELIKEIDEFVRRI--VEILTENPIYPD 101 (156)
T ss_pred HHHHHHHHHHHHHHH--HHHHHCCCCCCC
T ss_conf 899999999999999--986105877658
No 498
>KOG1975 consensus
Probab=21.35 E-value=27 Score=15.18 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCHHHHCCCCC
Q ss_conf 99999981999889426888
Q gi|254780414|r 379 VRLLGKELRLPDSFVERHPC 398 (520)
Q Consensus 379 VR~lg~~Lglp~~~~~RhPF 398 (520)
+|.|++++|| +||+++||
T Consensus 301 l~~lae~y~L--eLv~~k~F 318 (389)
T KOG1975 301 LVSLAEEYGL--ELVFVKPF 318 (389)
T ss_pred HHHHHHHCCC--EEEEECCH
T ss_conf 9999986295--89884268
No 499
>TIGR00434 cysH phosophoadenylyl-sulfate reductase; InterPro: IPR004511 Phosphoadenosine phosphosulphate reductase (1.8.4.8 from EC), involved in the assimilation of inorganic sulphate, is designated cysH in bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulphate reductase and PAPS reductase. In a reaction requiring reduced thioredoxin and NADPH, it converts 3'-phosphoadenylylsulphate (PAPS) to sulphite and adenosine 3',5' diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cut-off, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5'-adenylylsulphate (APS) over PAPS.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019379 sulfate assimilation phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin).
Probab=21.20 E-value=54 Score=13.06 Aligned_cols=61 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEC---CCCCCCCCHHHHHHHHHHCCC----CCEEEEEH
Q ss_conf 4036640564047799999986223656999973---895515627899998862369----85799758
Q gi|254780414|r 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVD---HGFMRKNEVENIISLFKGYPN----FPLRVVDA 285 (520)
Q Consensus 223 ~kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD---~GllRknE~~~v~~~~~~~~~----~~l~~vda 285 (520)
+.-+.+-|=|+...|.==|+.|- .++..-||+| ||++=+ |+-+..+.+++.+. +||++..+
T Consensus 14 ~~LV~~~SFGi~g~V~ldL~~ki-~~~~~~i~lDfiDTG~hF~-eTY~~~~~~~~ry~qPkglni~vy~p 81 (226)
T TIGR00434 14 DELVYSTSFGIEGAVLLDLVSKI-KKDIPVIFLDFIDTGYHFP-ETYELIDEVKERYPQPKGLNIKVYKP 81 (226)
T ss_pred CCCEEHHHHHHHHHHHHHHHHHH-CCCCCEEEECCHHHCCCCH-HHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 61020226789999999998851-7885146530001126727-78999999987616887750677678
No 500
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.20 E-value=54 Score=13.06 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---------------------CCCCEEEECCCC
Q ss_conf 86344886999988970578899888865940698528989889972---------------------399799998538
Q gi|254780414|r 2 HKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKE---------------------QNPQAIILSGSP 60 (520)
Q Consensus 2 ~~~~~~~~IlIlDfGSQytqLIaRriRelgVyseI~P~~~~~e~i~~---------------------~~p~GIILSGGP 60 (520)
...-+..+|+|+=+| .-..-.||.+.++|....++.-......-.. .+.+-||+|.|
T Consensus 9 ~~~~~gk~v~V~GlG-~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPG- 86 (481)
T PRK01438 9 HDDWSGLRVVVAGLG-VSGFPAADALHELGASVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPG- 86 (481)
T ss_pred HHHCCCCEEEEEEEC-HHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCC-
T ss_conf 677189989999575-889999999996799899997998744868999888549889968875666248999998997-
Q ss_pred CCCCCCCCCCCCHHHHHCCCCEEE
Q ss_conf 899999997537689808998899
Q gi|254780414|r 61 ASSLDIDSPQIPKEILESNIPLLG 84 (520)
Q Consensus 61 ~SV~d~~ap~~~~~I~~~~iPILG 84 (520)
...+.|.+.... +.++||++
T Consensus 87 ---I~~~~p~~~~a~-~~gi~i~~ 106 (481)
T PRK01438 87 ---WRPTHPLLAAAA-EAGIPVWG 106 (481)
T ss_pred ---CCCCCHHHHHHH-HCCCCEEC
T ss_conf ---899899999999-86993861
Done!