HHsearch alignment for GI: 254780414 and conserved domain: pfam03054
>pfam03054 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs.
Probab=99.61 E-value=2.4e-15 Score=129.85 Aligned_cols=160 Identities=28% Similarity=0.395 Sum_probs=109.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC---CC------CHHHHHHHHHHCCCCCEEEEEHHHHHHH---
Q ss_conf 03664056404779999998622365699997389551---56------2789999886236985799758899999---
Q gi|254780414|r 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR---KN------EVENIISLFKGYPNFPLRVVDASERFIR--- 291 (520)
Q Consensus 224 kVi~~lSGGVDStV~A~Ll~kAig~~l~~vfVD~GllR---kn------E~~~v~~~~~~~~~~~l~~vda~~~Fl~--- 291 (520)
T Consensus 2 kV~VamSGGVDSsVaA~LL~~~-Gy~V~Gv~m~~w~~~~~~~~~C~~~~d~~dA~~v-a~~LgIp~~v~d~~~~f~~~Vi 79 (354)
T pfam03054 2 KVVVAMSGGVDSSVAAYLLKEQ-GYEVIGVFMKNWDEEDEFGHGCCSEEDLADAQRV-CEQLGIPLYVVNFEKEYWEKVF 79 (354)
T ss_pred EEEEEECCCHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEECHHHHHHHHHH
T ss_conf 6999904789999999999977-9963999999566887667889988999999999-9986997899787998758999
Q ss_pred ------HHCCCC-CHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEECCCCCHHHHHHCC--CCCCCCEEEEEEC-CCCH
Q ss_conf ------966898-8899998875658999--99999743997099864622024542024--6777630344302-3201
Q gi|254780414|r 292 ------KLKNIV-DPETKRKVIGQLFIEV--FEEEAKKIGGAQFLGQGTLYPDVIESISF--FGGPSSIIKSHHN-VGGL 359 (520)
Q Consensus 292 ------~L~gv~-DPE~KRkiIG~~Fi~v--f~~~a~~~~~~~~L~QGTlypDvIES~~~--~~~~~~~IKsHHN-vggl 359 (520)
T Consensus 80 ~~fv~~Y~~G~TPNPc----v~CN~~IKFg~l~~~A~~~lGad~iATGH-YAri~~~~~~~~L~r~~D~~KDQSYfL~~l 154 (354)
T pfam03054 80 EPFLDEYKNGRTPNPD----ILCNREIKFGALLDYAKQVLGADYLATGH-YARVSLNENESELLRGKDKNKDQSYFLSGL 154 (354)
T ss_pred HHHHHHHHCCCCCCCC----HHHCCCCCHHHHHHHHHHHCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCCCCEEEECC
T ss_conf 9999999769999841----44189643899999999866998104474-289990499389998999999801786107
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 1320320223789873899999999819998
Q gi|254780414|r 360 PEHMDMKLVEPLKELFKDEVRLLGKELRLPD 390 (520)
Q Consensus 360 p~~~~~~liEPl~~l~KdEVR~lg~~Lglp~ 390 (520)
T Consensus 155 ~q~~L~~~lFPLG~~~K~eVR~iA~~~gL~~ 185 (354)
T pfam03054 155 SQEQLEKLLFPLGDLTKEEVRKIAKEAGLPT 185 (354)
T ss_pred CHHHHHHEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 8987643182876885289999999769988