RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus
Liberibacter asiaticus str. psy62]
(520 letters)
>gnl|CDD|36835 KOG1622, KOG1622, KOG1622, GMP synthase [Nucleotide transport and
metabolism].
Length = 552
Score = 514 bits (1325), Expect = e-146
Identities = 232/537 (43%), Positives = 323/537 (60%), Gaps = 27/537 (5%)
Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68
+LI+DFG+Q+ ++I RRVRE V E++ E P+ II+SG P S D+
Sbjct: 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDA 77
Query: 69 PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEK 128
P I E +P+LGICYG Q++ + GG RE G IE+ + L G+ K
Sbjct: 78 PSFDPAIFELGVPVLGICYGMQLINKLNGGTVVKGMVREDGEDEIEVDDSVDLFSGL-HK 136
Query: 129 GSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQL 188
V ++HGD + +PEGF+V+A S + P A I +E +K Y +QFHPEV T G +L
Sbjct: 137 TEFMTVLLTHGDSLSKVPEGFKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKEL 196
Query: 189 IDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGI 248
+ NF+ V G N+ M + +E ++ I++ VG+ +V+ AVSGGVDSTV A L+ A+G
Sbjct: 197 LKNFLFDVCGCSGNFTMENREEECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGP 256
Query: 249 N-LTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIG 307
+ + + VD+GFMRK E E + Y P+ VVDASE F+ KLK + DPE KRK+IG
Sbjct: 257 DRVHAIHVDNGFMRKKEAEQVEKTLV-YLGIPITVVDASETFLSKLKGVTDPEEKRKIIG 315
Query: 308 QLFIEVFEEEAKKI-----GGAQFLGQGTLYPDVIESISFFGGP-SSIIKSHHNVGGLPE 361
+ FI+VF+ A ++ FL QGTL PD+IES S +G + IK+HHN GL
Sbjct: 316 RTFIKVFDPVASELNKKHGEKESFLAQGTLRPDLIESASVYGSGHAETIKTHHNDTGLIR 375
Query: 362 HMDM--KLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITE---ERI 416
+ K++EPLK+ KDEVR LGK+L LP+S V RHP PGPGLAIR + +T ++
Sbjct: 376 DLRKLGKVIEPLKDFHKDEVRELGKDLGLPESLVPRHPFPGPGLAIRVLCAVTARDLPQL 435
Query: 417 NILRESDAIYREEIHK-AGIYRKIWQAFT---VLLPVQTVGVMGDERTYEYVCSL----- 467
I+R+ D I+ + I K G+Y +I QAF LLP++TVGV GD+R+Y YV +L
Sbjct: 436 EIIRKVDRIFIKSIRKDHGLYERIIQAFQIPARLLPIRTVGVQGDKRSYSYVIALPPRPL 495
Query: 468 RAVTSIDGMTADFY----HHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
RA T+ D MT D + FL ++ I N+V GI+RV+YD+TSKPP T EWE
Sbjct: 496 RAFTTSDFMTGDPATPGNEFPVKFLLKMVTEICNKVPGISRVLYDLTSKPPGTTEWE 552
>gnl|CDD|30865 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide
transport and metabolism].
Length = 315
Score = 512 bits (1321), Expect = e-146
Identities = 200/319 (62%), Positives = 246/319 (77%), Gaps = 4/319 (1%)
Query: 202 NWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR 261
W M ++ +E + I+EQVG+ +VI A+SGGVDS+VAA L + AIG LTCV VDHG +R
Sbjct: 1 MWTMENFIEEAIEEIREQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLR 60
Query: 262 KNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKI 321
K E E ++ +F+ + L VVDA +RF+ LK + DPE KRK+IG+ FIEVFEEEAKK+
Sbjct: 61 KGEAEQVVEMFREHLGLNLIVVDAKDRFLSALKGVTDPEEKRKIIGREFIEVFEEEAKKL 120
Query: 322 GGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRL 381
G A+FL QGT+YPDVIES G + IKSHHNVGGLPE M +KLVEPL+ELFKDEVR
Sbjct: 121 G-AEFLAQGTIYPDVIESG---TGKAGTIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRE 176
Query: 382 LGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQ 441
LG+EL LP+ V RHP PGPGLA+R +GE+T E++ ILRE+DAI EE+ KAG+Y KIWQ
Sbjct: 177 LGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKLEILREADAIVEEELRKAGLYDKIWQ 236
Query: 442 AFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKG 501
AF VLLPV++VGVMGD RTY YV +LRAV SIDGMTAD+ + L +++ RI NEV G
Sbjct: 237 AFAVLLPVKSVGVMGDGRTYGYVVALRAVESIDGMTADWARLPYDVLEKISNRITNEVPG 296
Query: 502 INRVVYDITSKPPATIEWE 520
+NRVVYDITSKPPATIEWE
Sbjct: 297 VNRVVYDITSKPPATIEWE 315
>gnl|CDD|30184 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
It contains two subdomains; the ATP pyrophosphatase
domain which closes to the N-termial and the
dimerization domain at C-terminal end. The ATP-PPase is
a twisted, five-stranded parallel beta-sheet sandwiched
between helical layers. It has a signature
nucleotide-binding motif, or P-loop, at the end of the
first-beta strand.The dimerization domain formed by the
C-terminal 115 amino acid for prokaryotic proteins. It
is adjacent to teh ATP-binding site of the ATP-PPase
subdomain. The largest difference between the primary
sequence of prokaryotic and eukaryotic GMP synthetase
map to the dimerization domain.Eukaryotic GMP synthetase
has several large insertions relative to prokaryotes..
Length = 295
Score = 483 bits (1246), Expect = e-137
Identities = 193/296 (65%), Positives = 233/296 (78%), Gaps = 1/296 (0%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283
+VI A+SGGVDSTVAA L+++AIG LTCV VD+G +RKNE E + LF L VV
Sbjct: 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVV 60
Query: 284 DASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFF 343
DASERF+ LK + DPE KRK+IG+ FIEVFEEEAKK+G A++L QGTLYPDVIES S
Sbjct: 61 DASERFLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSG- 119
Query: 344 GGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGL 403
G + IKSHHNVGGLPE M +KL+EPL++LFKDEVR LG+EL LP+ VERHP PGPGL
Sbjct: 120 KGSADTIKSHHNVGGLPEDMKLKLIEPLRDLFKDEVRELGRELGLPEEIVERHPFPGPGL 179
Query: 404 AIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEY 463
A+R +GE+TEE++ ILRE+DAI EE+ KAG+Y KIWQAF VLLP+++VGVMGD+RTY Y
Sbjct: 180 AVRILGEVTEEKLEILREADAIVEEELEKAGLYDKIWQAFAVLLPIKSVGVMGDQRTYGY 239
Query: 464 VCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEW 519
V +LRAV S D MTAD+ L +++ RI NEV G+NRVVYDITSKPPATIEW
Sbjct: 240 VVALRAVESSDFMTADWARLPYEVLEKISNRITNEVPGVNRVVYDITSKPPATIEW 295
>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in GMP synthetase. Type 1
glutamine amidotransferase (GATase1) domain found in GMP
synthetase. GMP synthetase is a glutamine
amidotransferase from the de novo purine biosynthetic
pathway. Glutamine amidotransferase (GATase) activity
catalyse the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. GMP
synthetase catalyses the amination of the nucleotide
precursor xanthosine 5'-monophospahte to form GMP. GMP
synthetase belongs to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site.
Length = 181
Score = 258 bits (661), Expect = 4e-69
Identities = 94/184 (51%), Positives = 131/184 (71%), Gaps = 3/184 (1%)
Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSP 69
+LI+DFGSQ+T LIARRVRE VY E++ L+ K +NP+ IILSG P+S + D+P
Sbjct: 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEEDAP 60
Query: 70 QIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKG 129
++ EI E +P+LGICYG Q++ ++LGGK + RE+G+A IEI + L +G+
Sbjct: 61 RVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDKREYGKAEIEIDDSSPLFEGLP--- 117
Query: 130 SKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLI 189
+Q VWMSHGD+V +PEGF+VIASSD+ P A IA+E++K Y VQFHPEV HT G +++
Sbjct: 118 DEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQFHPEVTHTEKGKEIL 177
Query: 190 DNFV 193
NF+
Sbjct: 178 KNFL 181
>gnl|CDD|144525 pfam00958, GMP_synt_C, GMP synthase C terminal domain. GMP
synthetase is a glutamine amidotransferase from the de
novo purine biosynthetic pathway. This family is the
C-terminal domain specific to the GMP synthases
EC:6.3.5.2. In prokaryotes this domain mediates
dimerization. Eukaryotic GMP synthases are monomers.
This domain in eukaryotes includes several large
insertions that may form globular domains.
Length = 93
Score = 192 bits (490), Expect = 3e-49
Identities = 63/93 (67%), Positives = 73/93 (78%)
Query: 427 REEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMN 486
EE+ KAG+Y KIWQAF VLLPV++VGVMGDERTY YV +LRAV S D MTAD+
Sbjct: 1 IEELRKAGLYDKIWQAFAVLLPVKSVGVMGDERTYGYVVALRAVESTDFMTADWARLPYE 60
Query: 487 FLSQVAIRIVNEVKGINRVVYDITSKPPATIEW 519
L +++ RI NEV G+NRVVYDITSKPPATIEW
Sbjct: 61 VLERISNRITNEVPGVNRVVYDITSKPPATIEW 93
>gnl|CDD|30864 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 190 bits (485), Expect = 6e-49
Identities = 77/199 (38%), Positives = 113/199 (56%), Gaps = 11/199 (5%)
Query: 9 KVLIIDFGSQFTQLIARRVRES-KVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID 67
K+LI+DFG Q+ LIARR+RE VY E++ + + +P II+SG P S D D
Sbjct: 3 KILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDED 62
Query: 68 --SPQIPKEILESNIP---LLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEI-KKNCSL 121
P+ I ++ +P +LGIC G Q++ ++LGGK + RE G +E+ + + L
Sbjct: 63 PWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIGWTPVELTEGDDPL 122
Query: 122 LKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVH 181
G+ + + V+MSHGD V +PEG V+ASS++ P KR Y VQFHPEV H
Sbjct: 123 FAGLPDLFT--TVFMSHGDTVVELPEGAVVLASSETCPNQAFRYGKR-AYGVQFHPEVTH 179
Query: 182 TVGGSQLIDNFVHHVAGIQ 200
G L++NF H + G +
Sbjct: 180 EY-GEALLENFAHEICGEE 197
>gnl|CDD|143892 pfam00117, GATase, Glutamine amidotransferase class-I.
Length = 187
Score = 137 bits (347), Expect = 7e-33
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 11 LIIDFGSQFTQLIARRVRESKVYCEVIAF-KNALDYFKEQNPQAIILSGSPASSLDID-S 68
L+ID G FT +AR +RE V EV+ A + + NP II+S P S D +
Sbjct: 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGGA 60
Query: 69 PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEK 128
+ KE+ E+ IP+LGIC G Q++ + GGK + + L G+
Sbjct: 61 IEAIKELRENKIPILGICLGHQLLALAFGGKVIK-AKEPHHGKNSPVGHDKGLFYGL--- 116
Query: 129 GSKQQVWMSHGDQV--EHIPEGFEVIASS--DSTPFAFIADEKRKYYAVQFHPEVVHTVG 184
+ V H V + +P+G EV A+S A E + VQFHPE T G
Sbjct: 117 PNVFIVRRYHSYAVDPDTLPDGLEVTAASDNGGEIMAIRHKEN-PIFGVQFHPESSLTPG 175
Query: 185 GSQLIDNFVHHV 196
G +L+ NF+ +
Sbjct: 176 GPELLFNFLIKL 187
>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 188
Score = 100 bits (250), Expect = 1e-21
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 23/153 (15%)
Query: 52 QAIILSGSPASSLDIDSPQIPKEI------LESNIPLLGICYGQQIMCQSLGGK-TKNSQ 104
+++ G P S + D P + K L + P+LGIC G Q++ ++LGGK +N +
Sbjct: 48 DGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK 107
Query: 105 SREFGRAFIEI---KKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPF- 160
E G + + K L G+ ++ HGD V +P G ++ASS++ P
Sbjct: 108 GWEIGWFPVTLTEAGKADPLFAGLPDEFPVFH---WHGDTVVELPPGAVLLASSEACPNQ 164
Query: 161 AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193
AF + + +QFHPE +L+ NF+
Sbjct: 165 AFRYGD--RALGLQFHPE-------ERLLRNFL 188
>gnl|CDD|30858 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component
II [Amino acid transport and metabolism / Coenzyme
metabolism].
Length = 191
Score = 85.2 bits (211), Expect = 4e-17
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 15/196 (7%)
Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILSGSPASSLD 65
+L+ID FT + + +RE + EV +N +L+ + P AI++S P + D
Sbjct: 3 MILLIDNYDSFTYNLVQYLRE--LGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKD 60
Query: 66 ID-SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKG 124
S ++ + IP+LG+C G Q + ++ GGK ++ G+ I L G
Sbjct: 61 AGISLELIRR-FAGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITHDGSGLFAG 119
Query: 125 MWEKGSKQQVWMSHGDQV--EHIPEGFEVIASS--DSTPFAFIADEKRKYYAVQFHPEVV 180
+ + V H V E +PE EV A S A + +K Y VQFHPE +
Sbjct: 120 L---PNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMA-VRHKKLPIYGVQFHPESI 175
Query: 181 HTVGGSQLIDNFVHHV 196
T G ++++NF+
Sbjct: 176 LTEYGHRILENFLRLA 191
>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine
amidotransferase (GATase1) domain found in Anthranilate
synthase. Type 1 glutamine amidotransferase (GATase1)
domain found in Anthranilate synthase (ASase). This
group contains proteins similar to para-aminobenzoate
(PABA) synthase and ASase. These enzymes catalyze
similar reactions and produce similar products, PABA and
ortho-aminobenzoate (anthranilate). Each enzyme is
composed of non-identical subunits: a glutamine
amidotransferase subunit (component II) and a subunit
that produces an aminobenzoate products (component I).
ASase catalyses the synthesis of anthranilate from
chorismate and glutamine and is a tetrameric protein
comprising two copies each of components I and II.
Component II of ASase belongs to the family of triad
GTases which hydrolyze glutamine and transfer nascent
ammonia between the active sites. In some bacteria, such
as Escherichia coli, component II can be much larger
than in other organisms, due to the presence of
phosphoribosyl-anthranilate transferase (PRTase)
activity. PRTase catalyses the second step in tryptophan
biosynthesis and results in the addition of
5-phosphoribosyl-1-pyrophosphate to anthranilate to
create N-5'-phosphoribosyl-anthranilate. In E.coli, the
first step in the conversion of chorismate to PABA
involves two proteins: PabA and PabB which co-operate to
transfer the amide nitrogen of glutamine to chorismate
forming 4-amino-4 deoxychorismate (ADC). PabA acts as a
glutamine amidotransferase, supplying an amino group to
PabB, which carries out the amination reaction. A third
protein PabC then mediates elimination of pyruvate and
aromatization to give PABA. Several organisms have
bipartite proteins containing fused domains homologous
to PabA and PabB commonly called PABA synthases. These
hybrid PABA synthases may produce ADC and not PABA.
Length = 184
Score = 80.3 bits (199), Expect = 1e-15
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 34/201 (16%)
Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILS---GSPASS 63
+L+ID FT + + +RE + EV+ +N L+ + NP AI++S G P +
Sbjct: 1 ILLIDNYDSFTYNLVQYLRE--LGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA 58
Query: 64 LDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLK 123
S +I + + +P+LG+C G Q + ++ GGK + G+ L K
Sbjct: 59 GI--SLEIIRALAG-KVPILGVCLGHQAIAEAFGGKVVRAPEPMHGKTSEIHHDGSGLFK 115
Query: 124 GMWEKGSKQQVWMSHGDQV----------EHIPEGFEVIASSDS-TPFAFIADEKRKYYA 172
G+ Q V + +P+ EV AS++ A + Y
Sbjct: 116 GL-----PQPF------TVGRYHSLVVDPDPLPDLLEVTASTEDGVIMA-LRHRDLPIYG 163
Query: 173 VQFHPEVVHTVGGSQLIDNFV 193
VQFHPE + T G +L++NF+
Sbjct: 164 VQFHPESILTEYGLRLLENFL 184
>gnl|CDD|164502 CHL00101, trpG, anthranilate synthase component 2.
Length = 190
Score = 67.1 bits (164), Expect = 1e-11
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 21/195 (10%)
Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILSGSPASSLDI 66
+LIID FT + + + E +V+ +N L K N + II+S P D
Sbjct: 2 ILIIDNYDSFTYNLVQSLGELNS--DVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDS 59
Query: 67 DSPQIPKEILES---NIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLK 123
I +++ S IP+LG+C G Q + GGK + G+ + L +
Sbjct: 60 G---ISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMHGKTSKIYHNHDDLFQ 116
Query: 124 GMWEKGSKQQVWMS--HGDQVE--HIPEGFEVIA-SSDSTPFAFIADEKRKYYAVQFHPE 178
G+ + H ++ ++P E+ A + D A + + +QFHPE
Sbjct: 117 GL-----PNPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPE 171
Query: 179 VVHTVGGSQLIDNFV 193
+ T G Q++ NF+
Sbjct: 172 SLLTTHGQQILRNFL 186
>gnl|CDD|38389 KOG3179, KOG3179, KOG3179, Predicted glutamine synthetase
[Nucleotide transport and metabolism].
Length = 245
Score = 64.6 bits (157), Expect = 6e-11
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 49 QNPQAIILSGSPASSLDIDSPQIPK------EILESNIPLLGICYGQQIMCQSLGGKT-K 101
+ ++SGS + D+ I K ++ +LGIC+G QI+ ++ GGK +
Sbjct: 58 EKYDGFVISGSKHDAFS-DADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR 116
Query: 102 NSQSREFGRAFIEIKKNCSLLKGMWEKGSKQ-QVWMSHGDQVEHIPEGFEVIASSDSTPF 160
+ + G I I K+ + + + K + H D+V +PEG E++ASS+
Sbjct: 117 APKGPDLGLGSITIVKDAEKPEKYFGEIPKSLNIIKCHQDEVLELPEGAELLASSEKCEV 176
Query: 161 AFIADEKRKYYAVQFHPE 178
+ + Q HPE
Sbjct: 177 E-MFSIEDHLLCFQGHPE 193
>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent
form of carbamoyl phosphate synthase, CPSase II. This
group of sequences represents the small chain of the
glutamine-dependent form of carbamoyl phosphate
synthase, CPSase II. CPSase II catalyzes the production
of carbomyl phosphate (CP) from bicarbonate, glutamine
and two molecules of MgATP. The reaction is believed to
proceed by a series of four biochemical reactions
involving a minimum of three discrete highly reactive
intermediates. The synthesis of CP is critical for the
initiation of two separate biosynthetic pathways. In one
CP is coupled to aspartate, its carbon and nitrogen
nuclei ultimately incorporated into the aromatic
moieties of pyrimidine nucleotides. In the second
pathway CP is condensed with ornithine at the start of
the urea cycle and is utilized for the detoxification of
ammonia and biosynthesis of arginine. CPSases may be
encoded by one or by several genes, depending on the
species. The E.coli enzyme is a heterodimer consisting
of two polypeptide chains referred to as the small and
large subunit. Ammonia an intermediate during the
biosynthesis of carbomyl phosphate produced by the
hydrolysis of glutamine in the small subunit of the
enzyme is delivered via a molecular tunnel between the
remotely located carboxyphosphate active site in the
large subunit. CPSase IIs belong to the triad family of
amidotransferases having a conserved Cys-His-Glu
catalytic triad in the glutaminase active site. This
group also contains the sequence from the mammalian urea
cycle form which has lost the active site Cys, resulting
in an ammonia-dependent form, CPSase I.
Length = 178
Score = 61.0 bits (149), Expect = 7e-10
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 47/189 (24%)
Query: 10 VLIIDFGSQFTQLIARRVRE-SKVYCEVIAFKNALDY--FKEQNPQAIILSGSPASSLDI 66
V++IDFG + L RE K CEV D + +P I LS P +
Sbjct: 1 VVVIDFGVKHNIL-----RELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPALL 55
Query: 67 DSPQIP--KEILESNIPLLGICYGQQIMCQSLGGKT---KNSQSREFG-RAF----IEIK 116
D I +++L IP+ GIC G Q++ +LG KT K FG R ++
Sbjct: 56 D-EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMK------FGHRGSNHPVKDLI 108
Query: 117 KNCSLLKGMWEKGSKQQVWMS---HGDQVEH--IPEGFEV--IASSDSTPFAFIADEKRK 169
+V+++ HG V+ +P G EV + +D T I +
Sbjct: 109 TG--------------RVYITSQNHGYAVDPDSLPGGLEVTHVNLNDGTV-EGIRHKDLP 153
Query: 170 YYAVQFHPE 178
++VQFHPE
Sbjct: 154 VFSVQFHPE 162
>gnl|CDD|30851 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino
acid transport and metabolism / Nucleotide transport and
metabolism].
Length = 368
Score = 59.8 bits (145), Expect = 2e-09
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68
V++IDFG + I R + + V+ + + NP I LS P +D
Sbjct: 181 HVVVIDFGVKRN--ILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLD- 237
Query: 69 PQIP--KEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFG-RAFIEIKKNCSLLKGM 125
I KE+L + IP+ GIC G Q++ +LG KT +FG R K+ L G
Sbjct: 238 YAIETIKELLGTKIPIFGICLGHQLLALALGAKTYK---MKFGHRGANHPVKD--LDTGR 292
Query: 126 WEKGSKQQVWMSHGDQV--EHIPEGFEVIASS--DSTPFAFIADEKRKYYAVQFHPE 178
S +HG V + + E +V + D T I + ++VQ+HPE
Sbjct: 293 VYITS-----QNHGYAVDEDSLVETLKVTHVNLNDGTV-EGIRHKDLPAFSVQYHPE 343
>gnl|CDD|164573 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific
small subunit; Provisional.
Length = 382
Score = 57.1 bits (138), Expect = 1e-08
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 34/183 (18%)
Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI-D 67
K+++IDFG ++ I RR++ V+ + P I+LS P I
Sbjct: 194 KIIVIDFGVKYN--ILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPSAIHY 251
Query: 68 SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE 127
+ K++L+ NIP+ GIC G QI+ +L KT +FG +
Sbjct: 252 GIKTVKKLLKYNIPIFGICMGHQILSLALEAKTF---KLKFGHRGLN-----------HP 297
Query: 128 KGSKQQVWMS---HGDQVEHIPEGFEVIASS---------DSTPFAFIADEKRKYYAVQF 175
G QQV ++ HG V E +A + + A I+ + Y++VQ+
Sbjct: 298 SGLNQQVEITSQNHGFAVN-----LESLAKNKFYITHFNLNDGTVAGISHSPKPYFSVQY 352
Query: 176 HPE 178
HPE
Sbjct: 353 HPE 355
>gnl|CDD|30386 COG0037, MesJ, Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control [Cell division and
chromosome partitioning].
Length = 298
Score = 55.2 bits (132), Expect = 4e-08
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 16/193 (8%)
Query: 205 MSSYHKEIVSRIKEQ-VGNERVICAVSGGVDSTVAAFLIYEAIG-INLTCVLVDHGFM-- 260
+++ I+E + +++ AVSGG DS L+ E I + V VDHG
Sbjct: 3 REKLERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGY 62
Query: 261 RKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETK-RKVIGQLFIEVFEEEAK 319
E E + L + PL V ++ R+ + R++ L ++ +E
Sbjct: 63 SDQEAELVEKLCEKL-GIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKEL-- 119
Query: 320 KIGGAQFLGQGTLYPDVIESIS---FFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFK 376
GA + G D E+ G ++ + ++ PL + +
Sbjct: 120 ---GADKIATGHHLDDQAETFLMNLLRGSGLRGLRGMPPKRPFEG--GLLIIRPLLYVRE 174
Query: 377 DEVRLLGKELRLP 389
E+ L KE LP
Sbjct: 175 KEIELYAKEKGLP 187
>gnl|CDD|153219 cd01748, GATase1_IGP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). Type 1 glutamine amidotransferase
(GATase1) domain found in imidazole glycerol phosphate
synthase (IGPS). IGPS incorporates ammonia derived from
glutamine into
N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-
carboxamide ribonucleotide (PRFAR) to form
5'-(5-aminoimidazole-4-carboxamide) ribonucleotide
(AICAR) and imidazole glycerol phosphate (IGP). The
glutamine amidotransferase domain generates the ammonia
nucleophile which is channeled from the glutaminase
active site to the PRFAR active site. IGPS belong to the
triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 198
Score = 54.4 bits (132), Expect = 8e-08
Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 43/149 (28%)
Query: 73 KEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFG------------RAF-------- 112
KE + S P LGIC G Q++ +S S E G F
Sbjct: 65 KEAIASGKPFLGICLGMQLLFES---------SEEGGGTKGLGLIPGKVVRFPASEGLKV 115
Query: 113 -------IEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPFAFIA 164
+EI K L KG+ + + H + ++A++D F A
Sbjct: 116 PHMGWNQLEITKESPLFKGIPDGSY---FYFVHSYYAP-PDDPDYILATTDYGGKFP-AA 170
Query: 165 DEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193
EK + QFHPE G +L+ NF+
Sbjct: 171 VEKDNIFGTQFHPEKSGKA-GLKLLKNFL 198
>gnl|CDD|30467 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and
metabolism].
Length = 204
Score = 51.3 bits (123), Expect = 5e-07
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 26/144 (18%)
Query: 73 KEILESNIPLLGICYGQQIMCQS------------LGGKTKNSQSREF-----GRAFIEI 115
KE +ES P LGIC G Q++ + + GK + + G +E
Sbjct: 68 KEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQVEF 127
Query: 116 KKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFIADEKRKYYAV 173
+ L KG+ + H V V+A++D PF A + K +
Sbjct: 128 VRGHPLFKGI---PDGAYFYFVHSYYVPPGNPE-TVVATTDYGEPFPAAV--AKDNVFGT 181
Query: 174 QFHPEVVHTVGGSQLIDNFVHHVA 197
QFHPE G +L+ NF+ +
Sbjct: 182 QFHPEKSGKA-GLKLLKNFLEWIP 204
>gnl|CDD|30177 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily. Adenine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins probably binds ATP. This
domain is about 200 amino acids long with a strongly
conserved motif SGGKD at the N terminus..
Length = 202
Score = 49.8 bits (119), Expect = 2e-06
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 28/208 (13%)
Query: 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVD 284
V A SGGVDST+ +A+G + V + E+E L K V++
Sbjct: 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEI-GIRHEVIE 59
Query: 285 ASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFG 344
E + +P + + + E +E A+++G L GT D+ +
Sbjct: 60 TDELDDPEFAK--NPPDRCYLCKKALYEALKEIAEELGLDVVL-DGTNADDLGD------ 110
Query: 345 GPSSIIKSHHNVGGLPEHMDMKLVEPLKE--LFKDEVRLLGKELRLPDSFVERHPCPGPG 402
+ G ++ + PL E L K E+R L +EL LP C
Sbjct: 111 ---------YRPGLKALR-ELGVRSPLAEAGLGKAEIRELARELGLPTWDKPAMAC---- 156
Query: 403 LAIRCI--GEITEERINILRESDAIYRE 428
LA R EITEER+ + ++ R
Sbjct: 157 LASRIPYGTEITEERLKKVEAAEEFLRS 184
>gnl|CDD|35249 KOG0026, KOG0026, KOG0026, Anthranilate synthase, beta chain [Amino
acid transport and metabolism].
Length = 223
Score = 49.3 bits (117), Expect = 3e-06
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 12/175 (6%)
Query: 34 CEVIAFKN---ALDYFKEQNPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQ 90
C ++N ++ K +NP+ +++S P + D L +PL G+C G Q
Sbjct: 44 CHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQ 103
Query: 91 IMCQSLGGKTKNSQSR----EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIP 146
+ ++ GGK S + + K L G+ + ++
Sbjct: 104 CIGEAFGGKIVRSPFGVMHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPS 163
Query: 147 EGFEVIASSDSTPFAFIADEKRKYY---AVQFHPEVVHTVGGSQLIDNFVHHVAG 198
+ EV A ++ +A RKY VQFHPE + T G ++ NF+ V
Sbjct: 164 DELEVTAWTEDG--LVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK 216
>gnl|CDD|30183 cd01996, Alpha_ANH_like_III, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domain has a strongly conserved motif SGGKD at the
N terminus..
Length = 154
Score = 48.3 bits (115), Expect = 4e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKG 274
I VSGG DS+ A +L+ E G+N V VD+GF + V+NI +L K
Sbjct: 4 CIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK 53
>gnl|CDD|32254 COG2071, COG2071, Predicted glutamine amidotransferases [General
function prediction only].
Length = 243
Score = 47.2 bits (112), Expect = 1e-05
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 16/128 (12%)
Query: 65 DIDSPQIPKEILESNIPLLGICYGQQIMCQSLGG-------------KTKNSQSREFGRA 111
D + + LE IP+LGIC G Q++ +LGG +
Sbjct: 93 DAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESH 152
Query: 112 FIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA-SSDSTPFAFIADEKRKY 170
+ I+ L K + E V H ++ + G V A + D T A
Sbjct: 153 EVHIEPGSKLAKILGESEF--MVNSFHHQAIKKLAPGLVVEARAPDGTVEAVEVKNDAFV 210
Query: 171 YAVQFHPE 178
VQ+HPE
Sbjct: 211 LGVQWHPE 218
>gnl|CDD|35591 KOG0370, KOG0370, KOG0370, Multifunctional pyrimidine synthesis
protein CAD (includes carbamoyl-phophate synthetase,
aspartate transcarbamylase, and glutamine
amidotransferase) [General function prediction only].
Length = 1435
Score = 47.2 bits (112), Expect = 1e-05
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 6 RSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPAS-SL 64
+S ++L ID G ++ Q+ R + + V+ + + + + LS P L
Sbjct: 171 KSLRILAIDCGLKYNQI--RCLVKRGAEVTVVPWDYPIAK---EEYDGLFLSNGPGDPEL 225
Query: 65 DIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKT 100
Q +E+LESN+P+ GIC G Q++ + G KT
Sbjct: 226 CPLLVQNVRELLESNVPVFGICLGHQLLALAAGAKT 261
>gnl|CDD|36438 KOG1224, KOG1224, KOG1224, Para-aminobenzoate (PABA) synthase ABZ1
[Translation, ribosomal structure and biogenesis].
Length = 767
Score = 47.0 bits (111), Expect = 1e-05
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 13/150 (8%)
Query: 53 AIILSGSPASSLDIDSPQIPKEILESN--IPLLGICYGQQIMCQSLGGKTKNSQSREFGR 110
AI++ P S + I +L IP+LGIC G Q + G ++ GR
Sbjct: 67 AIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHANEPVHGR 126
Query: 111 AF-IEIKKN---CSLLKGMWEKGSKQQVWMSHGDQVEHIP-EGFEVIASSDSTPFAF--- 162
IE N + G + S +V H + +P + ++ +
Sbjct: 127 VSGIEHDGNILFSGIPSG---RNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMS 183
Query: 163 IADEKRKYYAVQFHPEVVHTVGGSQLIDNF 192
I ++ +Q+HPE + + GSQL NF
Sbjct: 184 IMHSSFPHFGLQYHPESIASTYGSQLFKNF 213
>gnl|CDD|30166 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide adenine
dinucleotide (NAD+) biosynthesis, an amide transfer from
either ammonia or glutamine to nicotinic acid adenine
dinucleotide (NaAD). The conversion of NaAD to NAD+
occurs via an NAD-adenylate intermediate and requires
ATP and Mg2+. The intemediate is subsequently cleaved
into NAD+ and AMP. In many prokaryotes, such as E. coli
, NAD synthetase consists of a single domain and is
strictly ammonia dependent. In contrast, eukaryotes and
other prokaryotes have an additional N-terminal
amidohydrolase domain that prefer glutamine,
Interestingly, NAD+ synthases in these prokaryotes, can
also utilize ammonia as an amide source ..
Length = 248
Score = 46.4 bits (110), Expect = 2e-05
Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 81/229 (35%)
Query: 208 YHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE 264
+V +++ + G + V+ +SGG+DS + A L A+G
Sbjct: 6 IINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGR---------------- 49
Query: 265 VENIISLFKGYPNFPLRVVDASERFIRKLKNI---VDPETKRKVIGQLFIEVFEEEAKKI 321
EN+++LF + ++ L +D + + L E E + +
Sbjct: 50 -ENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPAVEAFLALLGESGGSELEDL 108
Query: 322 --GGAQ----------------------------FLGQGTLYPDVIESISFFGGPSSIIK 351
G Q LG T Y D
Sbjct: 109 ALGNIQARLRMVILYALANKLGGLVLGTGNKSELLLGYFTKYGD---------------- 152
Query: 352 SHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400
+ P+ +L+K +VR L + L +P+S +++ P
Sbjct: 153 ------------GAADINPIGDLYKTQVRELARYLGVPESIIDKPPSAE 189
>gnl|CDD|30520 COG0171, NadE, NAD synthase [Coenzyme metabolism].
Length = 268
Score = 45.7 bits (108), Expect = 4e-05
Identities = 40/218 (18%), Positives = 79/218 (36%), Gaps = 52/218 (23%)
Query: 207 SYHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIG-----INLTCVLVDHG 258
+V +++ + G + V+ +SGG+DS + L A+G N+ V + +G
Sbjct: 7 EEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYG 66
Query: 259 FMRKNEVENIISL--FKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQ-----LFI 311
+ + + E+ L G + + A + F++KL + + L +
Sbjct: 67 YTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRM 126
Query: 312 EVFEEEAKKIGGA---------QFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEH 362
+ A K+GG LG T Y D V
Sbjct: 127 VILYAIANKLGGLVLGTGNKSELALGYFTKYGD------------------GAVD----- 163
Query: 363 MDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400
+ P+ +L+K +V L + L +P+ +++ P
Sbjct: 164 -----INPIADLYKTQVYALARHLGIPEEILKKPPTAD 196
>gnl|CDD|31794 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only].
Length = 269
Score = 44.1 bits (104), Expect = 9e-05
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 34/224 (15%)
Query: 210 KEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENII 269
+ + IKE+ ++V+ A SGGVDS++ A L EA+G N+ V VD ++ + E+E
Sbjct: 8 ERLKKAIKEK---KKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAK 64
Query: 270 SLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQ 329
++ K + + +N PE + + + EEA+K G
Sbjct: 65 NIAKEI-GIRHEFIKMNRMDPEFKEN---PENRCYLCKRAVYSTLVEEAEKRG------- 113
Query: 330 GTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKE--LFKDEVRLLGKELR 387
Y V + + S + + GL ++ + PL E + K E+R + K L
Sbjct: 114 ---YDVVADGTNA-----SDLFDYRP--GLRALKELGIRSPLAEFGITKKEIREIAKSLG 163
Query: 388 LPDSFVERHPCPGPGLAIRCIG---EITEERINILRESDAIYRE 428
LP C LA R I EIT E + + E++ RE
Sbjct: 164 LPTWDKPSMAC----LASR-IPYGEEITVEDLKKVEEAEEFLRE 202
>gnl|CDD|30167 cd01712, ThiI, ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the
Adenosine Nucleotide Hydrolysis suoerfamily and
predicted to bind to Adenosine nucleotide..
Length = 177
Score = 43.7 bits (103), Expect = 1e-04
Identities = 34/192 (17%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFM----RKNEVENIISLFKGY-PNF 278
+ + +SGG+DS VAA+L+ + GI + + + G + +VE++ Y P
Sbjct: 1 KALALLSGGIDSPVAAWLLMKR-GIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGH 59
Query: 279 PLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIE 338
L V+ + +++ + + + ++ + E+ A+++ GA + G E
Sbjct: 60 KLVVIIFTFFVQKEIYGYGKEKYRCILCKRMMYRIAEKLAEEL-GADAIVTG-------E 111
Query: 339 SISFFGG--PSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERH 396
S+ G S +++ + D+ ++ PL K+E+ + + + D +
Sbjct: 112 SL----GQVASQTLENLLVIS---SGTDLPILRPLIGFDKEEIIGIARRIGTYDISIRPR 164
Query: 397 PCPGPGLAIRCI 408
C
Sbjct: 165 ECCCLFAPKNPA 176
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase
(GATase1)-like domain. Type 1 glutamine
amidotransferase (GATase1)-like domain. This group
includes proteins similar to Class I glutamine
amidotransferases, the intracellular PH1704 from
Pyrococcus horikoshii, the C-terminal of the large
catalase: Escherichia coli HP-II, Sinorhizobium
meliloti Rm1021 ThuA. and, the A4 beta-galactosidase
middle domain. The majority of proteins in this group
have a reactive Cys found in the sharp turn between a
beta strand and an alpha helix termed the nucleophile
elbow. For Class I glutamine amidotransferases
proteins which transfer ammonia from the amide side
chain of glutamine to an acceptor substrate, this Cys
forms a Cys-His-Glu catalytic triad in the active site.
Glutamine amidotransferases activity can be found in a
range of biosynthetic enzymes included in this cd:
glutamine amidotransferase, formylglycinamide
ribonucleotide, GMP synthetase, anthranilate synthase
component II, glutamine-dependent carbamoyl phosphate
synthase, cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as
CPSase.
Length = 115
Score = 42.6 bits (100), Expect = 3e-04
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 10 VLIIDFGSQFT---QLIARRVRESKVYCEVIAFKNALDYFKEQ--NPQAIILSGSPASSL 64
V ++ F +RE+ +V++ + +IL G P +
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 65 DIDSPQIP----KEILESNIPLLGICYGQQIM 92
D+ + +E + P+LGIC G Q++
Sbjct: 61 DLARDEALLALLREAAAAGKPILGICLGAQLL 92
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to
be a serine peptidase having a Ser-His-Glu catalytic
triad which differs from the Cys-His-Glu catalytic
triad of typical GATase1 domains, by having a Ser in
place of the reactive Cys at the nucleophile elbow. The
E. coli HP-II C-terminal domain, S. meliloti Rm1021
ThuA and the A4 beta-galactosidase middle domain lack
the catalytic triad typical GATaseI domains.
GATase1-like domains can occur either as single
polypeptides, as in Class I glutamine
amidotransferases, or as domains in a much larger
multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 42.2 bits (99), Expect = 3e-04
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 10 VLIIDFGSQFT---QLIARRVRESKVYCEVIAFKNALDYFKEQ--NPQAIILSGSPASSL 64
V ++ FG +RE+ +V++ + +IL G P +
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 65 DIDSP----QIPKEILESNIPLLGICYGQQIM 92
D+ + +E + P+LGIC G Q++
Sbjct: 61 DLAWDEALLALLREAAAAGKPVLGICLGAQLL 92
>gnl|CDD|145938 pfam03054, tRNA_Me_trans, tRNA methyl transferase. This family
represents
tRNA(5-methylaminomethyl-2-thiouridine)-
methyltransferase which is involved in the biosynthesis
of the modified nucleoside
5-methylaminomethyl-2-thiouridine present in the wobble
position of some tRNAs.
Length = 354
Score = 41.5 bits (98), Expect = 6e-04
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 14/48 (29%)
Query: 223 ERVICAVSGGVDSTVAAFLI----YEAIGINLTCVLVDHGFMRKNEVE 266
+V+ A+SGGVDS+VAA+L+ YE IG+ FM+ + E
Sbjct: 1 MKVVVAMSGGVDSSVAAYLLKEQGYEVIGV----------FMKNWDEE 38
>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. This group
contains a subgroup of proteins having the Type 1
glutamine amidotransferase (GATase1) domain. GATase
activity catalyses the transfer of ammonia from the
amide side chain of glutamine to an acceptor substrate.
Glutamine amidotransferases (GATase) includes the triad
family of amidotransferases which have a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site. In this subgroup this triad is conserved. GATase
activity can be found in a range of biosynthetic
enzymes, including: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase ,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. Glutamine
amidotransferase (GATase) domains can occur either as
single polypeptides, as in glutamine amidotransferases,
or as domains in a much larger multifunctional synthase
protein, such as CPSase.
Length = 189
Score = 40.6 bits (96), Expect = 0.001
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 29/107 (27%)
Query: 73 KEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQ 132
+ LE P+LGIC G Q++ +LGG + +I+ N SL
Sbjct: 94 RAALERGKPILGICRGMQLLNVALGGTL-----------YQDIRVN-SL----------- 130
Query: 133 QVWMSHGDQVEHIPEGFEVIASS-DSTPFAFIADEKRKYYAVQFHPE 178
H ++ + +G V A + D A + ++ VQ+HPE
Sbjct: 131 -----HHQAIKRLADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPE 172
>gnl|CDD|30830 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis].
Length = 356
Score = 40.6 bits (95), Expect = 0.001
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 221 GNERVICAVSGGVDSTVAAFLI----YEAIGINLTCVLVDHGFMRKNEVENIISLFKGYP 276
++V+ +SGGVDS+VAA+L+ YE IG+ + D G E + +
Sbjct: 2 KKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGG--GGCCSEEDLRDAERVA 59
Query: 277 NF---PLRVVDASERFIRKLKNIVDPETKR 303
+ PL VVD + F K+ E K
Sbjct: 60 DQLGIPLYVVDFEKEFWNKVFEYFLAEYKA 89
>gnl|CDD|30185 cd01998, tRNA_Me_trans, tRNA methyl transferase. This family
represents
tRNA(5-methylaminomethyl-2-thiouridine)-
methyltransferase which is involved in the biosynthesis
of the modified nucleoside
5-methylaminomethyl-2-thiouridine present in the wobble
position of some tRNAs. This family of enzyme only
presents in bacteria and eukaryote. The archaeal
counterpart of this enzyme performs same function, but
is completely unrelated in sequence..
Length = 349
Score = 40.1 bits (94), Expect = 0.001
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 4/31 (12%)
Query: 224 RVICAVSGGVDSTVAAFLI----YEAIGINL 250
+V+ A+SGGVDS+VAA L+ YE IG+ +
Sbjct: 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFM 31
>gnl|CDD|30180 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus..
Length = 185
Score = 40.2 bits (94), Expect = 0.001
Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 32/194 (16%)
Query: 224 RVICAVSGGVDSTVAAFLIYE-----AIGINLTCVLVDHGF-MRKNEVENIISLFKGYPN 277
R++ A+SGG DS V ++ + G L + VD G ++E ++
Sbjct: 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELG 60
Query: 278 FPLRVVDASERFIRKLKNIVDPETKRKVI---------GQLFIEVFEEEAKKIGGAQFLG 328
L +V E + +I + K G L E A K+ L
Sbjct: 61 IELEIVSFKEEY---TDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLD 117
Query: 329 QGTLYPDVIESI---SFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKE 385
D E++ GG +++ + D+ + PL + + E+ L +
Sbjct: 118 ------DEAETLLMNLLRGGILRLMRPGPILYLDEG--DVTRIRPLVYVREKEIVLYAEL 169
Query: 386 LRLPDSFVERHPCP 399
LP CP
Sbjct: 170 NGLP---FVEEECP 180
>gnl|CDD|30179 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus..
Length = 185
Score = 39.4 bits (92), Expect = 0.002
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAI---GINLTCVLVDHGF 259
+++ AVSGG DS L+ E G+ L V VDHG
Sbjct: 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGL 39
>gnl|CDD|145596 pfam02540, NAD_synthase, NAD synthase. NAD synthase (EC:6.3.5.1)
is involved in the de novo synthesis of NAD and is
induced by stress factors such as heat shock and glucose
limitation.
Length = 243
Score = 39.3 bits (92), Expect = 0.002
Identities = 39/205 (19%), Positives = 76/205 (37%), Gaps = 43/205 (20%)
Query: 208 YHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNE 264
+ +V +++ V G + V+ +SGG+DS V A+L +A+G
Sbjct: 1 VIERLVDFLRDYVQKSGAKGVVLGLSGGIDSAVVAYLAVKALG----------------- 43
Query: 265 VENIISLFKGYPNFPLRVVDASERFIRKL--KNIVDPETKRKVIGQLFIEVFEEEAKKIG 322
EN+++L N V + L K I + F ++F+ +
Sbjct: 44 KENVLALIMPSINSSEEDVQDALALAENLGINYKTID---IKPIVRAFSQLFQPAKDDLA 100
Query: 323 GAQF---LGQGTLYPDVIESISFFGGPSSII------KSHHNVGGLPEHMDMKL-VEPLK 372
+ LY + + KS +G ++ D + P+
Sbjct: 101 KGNLKARIRMIILY--------AHANKFNRLVLGTGNKSELALGYFTKYGDGACDIAPIG 152
Query: 373 ELFKDEVRLLGKELRLPDSFVERHP 397
+L+K +V L K L +P+ +++ P
Sbjct: 153 DLYKTQVYELAKRLNVPERIIKKPP 177
>gnl|CDD|144677 pfam01171, ATP_bind_3, PP-loop family. This family of proteins
belongs to the PP-loop superfamily.
Length = 182
Score = 36.8 bits (86), Expect = 0.014
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 224 RVICAVSGGVDSTVAAFLIYEA---IGINLTCVLVDHGFMRKN 263
+++ AVSGG DS +L+ + GI+LT VDHG +R+
Sbjct: 1 KILVAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVDHG-LREE 42
>gnl|CDD|38016 KOG2805, KOG2805, KOG2805, tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 377
Score = 36.5 bits (84), Expect = 0.017
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 6/38 (15%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR 261
RV+ A+SGGVDS+VAA L+ G N+T V FM+
Sbjct: 7 RVVVAMSGGVDSSVAARLLAAR-GYNVTGV-----FMK 38
>gnl|CDD|30524 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 36.2 bits (83), Expect = 0.020
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 210 KEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENII 269
EI+ E+ N V+ + SGG DSTV L +A + + +D G+ E
Sbjct: 28 IEILRWAAEEFSNPVVV-SFSGGKDSTVLLHLAAKAFP-DFPVIFLDTGYHFPETYEFRD 85
Query: 270 SLFKGYPNFPLRVVDASERFIRKLKNI 296
L + Y L+V + K
Sbjct: 86 RLAEEY-GLDLKVYRPDDEVAEGEKYG 111
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of the
purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 35.7 bits (83), Expect = 0.033
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 73 KEILESNIPLLGICYGQQIMCQS-------LGGKTKNSQSREFGRAFIEIK---KNCSLL 122
KE E +LGIC G QI+ + + K R R F+ ++ +
Sbjct: 76 KEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNR-FVTLRVENNDSPFT 134
Query: 123 KGMWEKGSKQQVWMSHGD 140
KG +G ++ ++HG+
Sbjct: 135 KGY-MEGEVLRIPVAHGE 151
>gnl|CDD|145613 pfam02568, ThiI, Thiamine biosynthesis protein (ThiI). ThiI is
required for thiazole synthesis, required for thiamine
biosynthesis.
Length = 197
Score = 34.7 bits (80), Expect = 0.064
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVE-------NIISLFKGY 275
+V+ +SGG+DS VAA+L+ G + + + E +++ +
Sbjct: 4 GKVLALLSGGIDSPVAAYLMMRR-GCRVVALHFINEPGTSEEAIEKVRKLAELLAEYGTS 62
Query: 276 PNFPLRVVDASERFIRKLKNIVDP 299
L VVD + +++
Sbjct: 63 CEGKLVVVDF-TKVQKEIIEKAPE 85
>gnl|CDD|30396 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 34.4 bits (79), Expect = 0.074
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 73 KEILESNIPLLGICYGQQIMCQS--LGGKTKNSQSREF--GRAFIEIKKNCSLLKGMWEK 128
+E E P+LGIC G QI+ ++ L G ++S F ++ ++ N + +E
Sbjct: 75 REFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVENNNTPFTSGYEG 134
Query: 129 GSKQQVWMSHGD 140
G + ++HG+
Sbjct: 135 GEVIPIPVAHGE 146
>gnl|CDD|153221 cd01750, GATase1_CobQ, Type 1 glutamine amidotransferase
(GATase1) domain found in Cobyric Acid Synthase (CobQ).
Type 1 glutamine amidotransferase (GATase1) domain
found in Cobyric Acid Synthase (CobQ). CobQ plays a
role in cobalamin biosythesis. CobQ catalyses
amidations at positions B, D, E, and G on
adenosylcobyrinic A,C-diamide in the biosynthesis of
cobalamin. CobQ belongs to the triad family of
amidotransferases. Two of the three residues of the
catalytic triad that are involved in glutamine binding,
hydrolysis and transfer of the resulting ammonia to the
acceptor substrate in other triad aminodotransferases
are conserved in CobQ.
Length = 194
Score = 33.0 bits (76), Expect = 0.21
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 10 VLIIDFG--SQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID 67
+ +I + S FT L RE V + L + IIL GS + D+
Sbjct: 1 IAVIRYPDISNFTDL-DPLAREPGVDVRYVEVPEGLG-----DADLIILPGSKDTIQDLA 54
Query: 68 SPQIP------KEILESNIPLLGICYGQQIMCQSL 96
+ K + P+LGIC G Q++ + +
Sbjct: 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89
>gnl|CDD|73292 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases and ATP
sulphurylases. The domain forms a apha/beta/apha fold
which binds to Adenosine group...
Length = 103
Score = 32.8 bits (74), Expect = 0.24
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 225 VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHG-FMRKNEVENII 269
V+ A SGG DS+VAA L+ + G + V VDHG R + + I
Sbjct: 1 VLVAFSGGKDSSVAAALLKKL-GYQVIAVTVDHGISPRLEDAKEIA 45
>gnl|CDD|30649 COG0301, ThiI, Thiamine biosynthesis ATP pyrophosphatase [Coenzyme
metabolism].
Length = 383
Score = 32.2 bits (73), Expect = 0.37
Identities = 18/107 (16%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Query: 222 NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIIS--LFKGYPNFP 279
+V+ +SGG+DS VAA+L+ + G+ + V + + + ++
Sbjct: 175 QGKVLLLLSGGIDSPVAAWLMMKR-GVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYG 233
Query: 280 LRVVDASERF---IRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGG 323
+V F ++ V + ++ ++ + E+ A++ G
Sbjct: 234 GKVRLYVVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGA 280
>gnl|CDD|144363 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyse the conversion of aspartate to
asparagine.
Length = 195
Score = 31.1 bits (71), Expect = 0.83
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 220 VGNERVICAVSGGVDSTVAAFL 241
+ V +SGG+DS++ A L
Sbjct: 15 RADVPVGVLLSGGLDSSLIAAL 36
>gnl|CDD|30850 COG0504, PyrG, CTP synthase (UTP-ammonia lyase) [Nucleotide
transport and metabolism].
Length = 533
Score = 30.8 bits (70), Expect = 0.89
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 77 ESNIPLLGICYGQQIM----CQSLGGKTKNSQSREF 108
E+NIP LGIC G Q+ +++ G + + S EF
Sbjct: 370 ENNIPFLGICLGMQLAVIEFARNVLGL-EGANSTEF 404
>gnl|CDD|153217 cd01746, GATase1_CTP_Synthase, Type 1 glutamine amidotransferase
(GATase1) domain found in Cytidine Triphosphate
Synthetase. Type 1 glutamine amidotransferase (GATase1)
domain found in Cytidine Triphosphate Synthetase (CTP).
CTP is involved in pyrimidine
ribonucleotide/ribonucleoside metabolism. CTPs produce
CTP from UTP and glutamine and regulate intracellular
CTP levels through interactions with four ribonucleotide
triphosphates. The enzyme exists as a dimer of identical
chains that aggregates as a tetramer. CTP is derived
form UTP in three separate steps involving two active
sites. In one active site, the UTP O4 oxygen is
activated by Mg-ATP-dependent phosphorylation, followed
by displacement of the resulting 4-phosphate moiety by
ammonia. At a separate site, ammonia is generated via
rate limiting glutamine hydrolysis (glutaminase)
activity. A gated channel that spans between the
glutamine hydrolysis and amidoligase active sites
provides a path for ammonia diffusion. CTPs belong to
the triad family of amidotransferases having a conserved
Cys-His-Glu catalytic triad in the glutaminase active
site.
Length = 235
Score = 31.0 bits (71), Expect = 0.91
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 77 ESNIPLLGICYGQQIM----CQSLGGKTKNSQSREF 108
E+NIP LGIC G Q+ +++ G ++ S EF
Sbjct: 82 ENNIPFLGICLGMQLAVIEFARNVLGL-PDANSTEF 116
>gnl|CDD|37598 KOG2387, KOG2387, KOG2387, CTP synthase (UTP-ammonia lyase)
[Nucleotide transport and metabolism].
Length = 585
Score = 30.2 bits (68), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 77 ESNIPLLGICYGQQI----MCQSLGGKTKNSQSREF 108
E+ IP LGIC G Q+ +++ G K++ S EF
Sbjct: 390 ENKIPFLGICLGMQLAVIEFARNVLG-LKDANSTEF 424
>gnl|CDD|38051 KOG2840, KOG2840, KOG2840, Uncharacterized conserved protein with
similarity to predicted ATPase of the PP-loop
superfamily [General function prediction only].
Length = 347
Score = 30.3 bits (68), Expect = 1.4
Identities = 56/230 (24%), Positives = 84/230 (36%), Gaps = 30/230 (13%)
Query: 222 NERVICAVSGGVDSTVAAFL-----IYEAIGINLTCVLVDHG--FMRKNEVENIISLFKG 274
ERV SGG DSTV A++ G+ L + +D G R + +E +
Sbjct: 51 GERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQ 110
Query: 275 YPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQ------LFIEVFEEEAKKIG----GA 324
Y PL +V + L + IGQ F VF +A G GA
Sbjct: 111 Y-GLPLCIVS-----YKDLYGEWTMDEIVSEIGQEIRNNCTFCGVFRRQALDRGADVLGA 164
Query: 325 QFLGQGTLYPDVIESI--SFFGGPSSIIKSHHNVG-GLPEHMDMKLVEPLKELFKDEVRL 381
L G D E++ + G S+ ++ + E + ++PLK + E+ L
Sbjct: 165 AELVTGHNADDWAETVLMNLLRGDSARLERLTEITTPSLEMGIIPRLKPLKYASEKEIVL 224
Query: 382 LGKELRLPDSFVERHPCPGP--GLAIRCIGEITEERINILRESDAIYREE 429
+L E PG G A + ++ ER IL D E
Sbjct: 225 YASLSKLRYFSTECVKAPGASRGDARILLKDLERERPRILM--DYCRSGE 272
>gnl|CDD|73293 cd01995, ExsB, ExsB is a transcription regulator related protein.
It is a subfamily of a Adenosine nucleotide binding
superfamily of proteins. This protein family is
represented by a single member in nearly every completed
large (> 1000 genes) prokaryotic genome. In Rhizobium
meliloti, a species in which the exo genes make
succinoglycan, a symbiotically important
exopolysaccharide, exsB is located nearby and affects
succinoglycan levels, probably through polar effects on
exsA expression or the same polycistronic mRNA. In
Arthrobacter viscosus, the homologous gene is designated
ALU1 and is associated with an aluminum tolerance
phenotype. The function is unknown.
Length = 169
Score = 30.2 bits (68), Expect = 1.6
Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 39/180 (21%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283
+ + +SGG+DST + G + + D+G +++ E
Sbjct: 1 KAVVLLSGGLDSTTCLA-WAKKEGYEVHALSFDYG--QRHAKE----------------E 41
Query: 284 DASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG-GAQFLG----QGTLYPDVIE 338
+A++ KL P T +F+ + A+ +G A +G + YPD
Sbjct: 42 EAAKLIAEKLG----PSTYVPARNLIFLSIAAAYAEALGAEAIIIGVNAEDYSGYPDC-- 95
Query: 339 SISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPC 398
F I++ + L +K+ PL +L K E+ LG EL +P C
Sbjct: 96 RPEF-------IEAMNKALNLGTENGIKIHAPLIDLSKAEIVRLGGELGVP--LELTWSC 146
>gnl|CDD|32874 COG3060, MetJ, Transcriptional regulator of met regulon
[Transcription / Amino acid transport and metabolism].
Length = 105
Score = 29.3 bits (65), Expect = 2.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 426 YREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYH 482
Y E K+ +KI TV +P++ + ++ DERT V +LR T+ + + F H
Sbjct: 12 YAEHGKKSEQVKKI----TVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLH 64
>gnl|CDD|31681 COG1492, CobQ, Cobyric acid synthase [Coenzyme metabolism].
Length = 486
Score = 29.0 bits (65), Expect = 3.0
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSP 69
V+ + S FT R E V + + L + +IL GS + D+
Sbjct: 256 VIRLPRISNFTDFDPLR-AEPDVRVRFVKPGSDLR-----DADLVILPGSKNTIADLKIL 309
Query: 70 Q---IPKEILES---NIPLLGICYGQQIMCQSL 96
+ + ++ILE ++GIC G Q++ + L
Sbjct: 310 REGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342
>gnl|CDD|30178 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine
Synthase B. This domain is always found associated
n-terminal amidotransferase domain. Family members that
contain this domain catalyse the conversion of aspartate
to asparagine. Asparagine synthetase B catalyzes the
assembly of asparagine from aspartate, Mg(2+)ATP, and
glutamine. The three-dimensional architecture of the
N-terminal domain of asparagine synthetase B is similar
to that observed for glutamine
phosphoribosylpyrophosphate amidotransferase while the
molecular motif of the C-domain is reminiscent to that
observed for GMP synthetase ..
Length = 269
Score = 28.9 bits (64), Expect = 3.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 220 VGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVE 266
+ V +SGG+DS++ A L + + + GF +E E
Sbjct: 13 RSDVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDERE 59
>gnl|CDD|119402 cd00490, Met_repressor_MetJ, Met Repressor, MetJ. MetJ is a
bacterial regulatory protein that uses
S-adenosylmethionine (SAM) as a corepressor to regulate
the production of Methionine. MetJ binds arrays of two
to five adjacent copies of an eight base-pair 'metbox'
sequence. MetJ forms sufficiently strong interactions
with the sugar-phosphate backbone to accomodate sequence
variation in natural operators. However, it is very
sensitive to particular base changes in the operator.
MetJ exists as a homodimer..
Length = 103
Score = 28.7 bits (64), Expect = 3.6
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 426 YREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYH 482
Y E K+ +KI TV +P++ + ++ DERT V +LR T+ + + F H
Sbjct: 11 YAEHGKKSEQVKKI----TVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLH 63
>gnl|CDD|110348 pfam01340, MetJ, Met Apo-repressor, MetJ.
Length = 104
Score = 28.5 bits (63), Expect = 4.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 426 YREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYH 482
Y E K+ +KI TV +P++ + ++ DERT V +LR T+ + + F H
Sbjct: 11 YAEHGKKSEQVKKI----TVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLH 63
>gnl|CDD|38657 KOG3447, KOG3447, KOG3447, Mitochondrial/chloroplast ribosomal
S17-like protein [Translation, ribosomal structure and
biogenesis].
Length = 150
Score = 28.4 bits (63), Expect = 4.7
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 269 ISLFKGYPNFPLRVVD-ASERFIRKLKNIVDPETKRKVIGQLFIE--------VFE--EE 317
L + P + V + K+ I+DP T +K G ++E +
Sbjct: 63 TVLIRALPVRRTKHVKHEVAEVVFKVGKIIDPVTGKKCAGDTYLESPLSKETTQLSKNLK 122
Query: 318 AKKIGGAQFLGQGTLYPDVIE 338
I AQF + L +E
Sbjct: 123 ELNIESAQFRERRALQIRRLE 143
>gnl|CDD|30716 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 28.5 bits (63), Expect = 4.8
Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 28/193 (14%)
Query: 212 IVSRIKEQVGNERVICA-VSGGVDST-VAAFLIYEAIGINLTCVLVDHGFMRKNEVENII 269
+ +K ++ + + +SGG+DS+ +AA E T V + +
Sbjct: 219 LEDAVKRRLVADVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPDAKYAR 278
Query: 270 SLFK--GYPN--FPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQ 325
++ K G P+ L + +K + P I + + +
Sbjct: 279 AVAKFLGTPHHEIILTNEELLNALPEVVKALDTPGGMAASIPLYL--LSRKARAEGEKVV 336
Query: 326 FLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELF--------KD 377
G+G + FGG + PE + + + L
Sbjct: 337 LSGEG--------ADELFGGYPPYSRFA----PGPEELLNEALRRALALIDYNRLARDDR 384
Query: 378 EVRLLGKELRLPD 390
G E R+P
Sbjct: 385 VAAAFGVEARVPF 397
>gnl|CDD|30948 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General
function prediction only].
Length = 222
Score = 28.3 bits (63), Expect = 5.4
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRV 282
++ + +SGG+DST + G + + D+G + E+E L K P +
Sbjct: 3 KKAVVLLSGGLDSTTCLAWAKKE-GYEVHALTFDYGQRHRKELEAAKELAKKL-GVPHHI 60
Query: 283 VDAS 286
+D
Sbjct: 61 IDVD 64
>gnl|CDD|147331 pfam05099, TerB, Tellurite resistance protein TerB. This family
contains the TerB tellurite resistance proteins from a a
number of bacteria.
Length = 140
Score = 28.3 bits (64), Expect = 5.7
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 287 ERFIRKLKNIVDPETKRKVIGQLF 310
F R +K+ D E + ++ L+
Sbjct: 81 YEFTRAIKDHFDYEQRLALLEALW 104
>gnl|CDD|38907 KOG3703, KOG3703, KOG3703, Heparan sulfate
N-deacetylase/N-sulfotransferase [Posttranslational
modification, protein turnover, chaperones].
Length = 873
Score = 28.0 bits (62), Expect = 6.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 137 SHGDQVEHIPEGFEVIASSDSTPFAFIADEKR----KYYAVQ-------FHPEVVHTVGG 185
+H D V +EVI++S S P A A + R +YA F + + + G
Sbjct: 710 AHEDPVALNYSFYEVISASSSAPSALKALQNRCLVPGWYATHLERWLTYFPAQQLLIIDG 769
Query: 186 SQL 188
QL
Sbjct: 770 QQL 772
>gnl|CDD|107285 cd06290, PBP1_LacI_like_9, Ligand-binding domain of
uncharacterized DNA-binding regulatory proteins that
are members of the LacI-GalR family of bacterial
transcription repressors. This group includes the
ligand-binding domain of uncharacterized DNA-binding
regulatory proteins that are members of the LacI-GalR
family of bacterial transcription repressors. The
LacI-GalR family repressors are composed of two
functional domains: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal
ligand-binding domain, which is homologous to the
sugar-binding domain of ABC-type transport systems that
contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the
DNA binding affinity of the repressor.
Length = 265
Score = 28.1 bits (63), Expect = 6.3
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 20/90 (22%)
Query: 10 VLIIDFGSQFT----QLIARRVRESKVYCEVIA--------FKNALDYFKEQNPQAIILS 57
VL DF S F + + R + S Y +IA AL+ K + A+IL
Sbjct: 4 VLTQDFASPFYGRILKGMERGLNGSG-YSPIIATGHWNQSRELEALELLKSRRVDALILL 62
Query: 58 GSPASSLDIDSPQIPKEILESNIPLLGICY 87
G D+ +I L IP+L +
Sbjct: 63 GG-----DLPEEEI--LALAEEIPVLAVGR 85
>gnl|CDD|35248 KOG0025, KOG0025, KOG0025, Zn2+-binding dehydrogenase (nuclear
receptor binding factor-1) [Transcription, Energy
production and conversion].
Length = 354
Score = 28.0 bits (62), Expect = 6.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 366 KLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIG 409
+L + LK L EV + +ELR + P P LA+ C+G
Sbjct: 200 ELKKQLKSLGATEV-ITEEELRDRKMKKFKGDNPRPRLALNCVG 242
>gnl|CDD|66449 pfam02764, Diphtheria_T, Diphtheria toxin, T domain. Central
domain of diphtheria toxin is the translocation (T)
domain. pH induced conformational change in this domain
triggers insertion into the endosomal membrane and
facilitates the transfer of the catalytic domain into
the cytoplasm.
Length = 180
Score = 28.2 bits (62), Expect = 6.5
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 141 QVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFH------PEV--VHTVGGSQLI--- 189
++E + E + +P +++EK K Y +FH PE+ + TV G+ +
Sbjct: 17 KIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAG 76
Query: 190 DNFVH---HVAGIQDNWVMSSYHKEIVS-RIKEQVGNERVIC--AVSGGVDSTVAAFLIY 243
N+ +VA + D+ + K + I +G+ I AV + VA +
Sbjct: 77 ANYAAWAVNVAQVIDSETADNLEKTTAALSILPGIGSVMGIADGAVHHNTEEIVAQSIAL 136
Query: 244 EAI----GINLTCVLVDHGFMRKNEVENIISLFK 273
++ I L LVD GF N VE+II+LF+
Sbjct: 137 SSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQ 170
>gnl|CDD|30168 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) ..
Length = 173
Score = 28.1 bits (62), Expect = 6.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAI--GINLTCVLVDHGF 259
V+ + SGG DSTV L +A+ + + +D G+
Sbjct: 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGY 38
>gnl|CDD|173972 cd08207, RLP_NonPhot, Ribulose bisphosphate carboxylase like
proteins from nonphototrophic bacteria. Ribulose
bisphosphate carboxylase (Rubisco) plays an important
role in the Calvin reductive pentose phosphate pathway.
It catalyzes the primary CO2 fixation step. Rubisco is
activated by carbamylation of an active site lysine,
stabilized by a divalent cation, which then catalyzes
the proton abstraction from the substrate ribulose 1,5
bisphosphate (RuBP) and leads to the formation of two
molecules of 3-phosphoglycerate. Members of the Rubisco
family can be divided into 4 subgroups, Form I-IV, which
differ in their taxonomic distribution and subunit
composition. Form I-III have Rubisco activity, while
Form IV, also called Rubisco-like proteins (RLP), are
missing critical active site residues and therefore do
not catalyze CO2 fixation. They are believed to utilize
a related enzymatic mechanism, but have divergent
functions. The specific function of this subgroup is
unknown.
Length = 406
Score = 27.7 bits (62), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 379 VRLLGKELRLPDSFVERHPCPGPGLA 404
+RL+ +L LPD F P P G+A
Sbjct: 109 LRLV--DLGLPDEFAAAFPGPAFGIA 132
>gnl|CDD|112830 pfam04031, Las1, Las1-like. Las1 is an essential nuclear protein
involved in cell morphogenesis and cell surface growth.
Length = 149
Score = 27.6 bits (62), Expect = 7.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 367 LVEPLKE-LFKDEVRLLGKELRLPDSFVE-RHPC 398
L++P ++ + +R L KE+ LP+ FVE RH
Sbjct: 86 LLDPTQQGQYAIPMRKLAKEIGLPEWFVELRHEA 119
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.408
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,528,166
Number of extensions: 361929
Number of successful extensions: 1085
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1047
Number of HSP's successfully gapped: 89
Length of query: 520
Length of database: 6,263,737
Length adjustment: 98
Effective length of query: 422
Effective length of database: 4,146,055
Effective search space: 1749635210
Effective search space used: 1749635210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)