RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (520 letters)



>gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed.
          Length = 511

 Score =  951 bits (2461), Expect = 0.0
 Identities = 300/513 (58%), Positives = 391/513 (76%), Gaps = 5/513 (0%)

Query: 8   SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID 67
            K+LI+DFGSQ+TQLIARRVRE  VY E++ +  + +  +  NP+ IILSG PAS  +  
Sbjct: 4   DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEG 63

Query: 68  SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE 127
           +P+   EI E  +P+LGICYG Q+M   LGGK + +  RE+GRA +E+  +  L KG+  
Sbjct: 64  APRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGL-- 121

Query: 128 KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQ 187
              +Q VWMSHGD+V  +PEGF+VIAS+++ P A IA+E+RK+Y VQFHPEV HT  G +
Sbjct: 122 -PEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKK 180

Query: 188 LIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIG 247
           L++NFV  + G + +W M ++ +E +  I+EQVG+++VI  +SGGVDS+VAA L+++AIG
Sbjct: 181 LLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLHKAIG 240

Query: 248 INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIG 307
             LTCV VDHG +RKNE E ++ +F+ +    L  VDAS+RF+  L  + DPE KRK+IG
Sbjct: 241 DQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIG 300

Query: 308 QLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKL 367
           + FIEVFEEEAKK+GG +FL QGTLYPDVIES       ++ IKSHHNVGGLPE M +KL
Sbjct: 301 REFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGT--KKAATIKSHHNVGGLPEDMKLKL 358

Query: 368 VEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYR 427
           VEPL+ELFKDEVR LG EL LP+  V RHP PGPGLAIR +GE+T+E+++ILRE+DAI+ 
Sbjct: 359 VEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLAIRILGEVTKEKLDILREADAIFI 418

Query: 428 EEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNF 487
           EE+ KAG+Y KIWQAF VLLPV++VGVMGD RTY+YV +LRAVTSIDGMTAD+     +F
Sbjct: 419 EELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYDYVVALRAVTSIDGMTADWARLPYDF 478

Query: 488 LSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
           L +++ RI+NEVKG+NRVVYDITSKPPATIEWE
Sbjct: 479 LEKISNRIINEVKGVNRVVYDITSKPPATIEWE 511


>gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase.
          Length = 536

 Score =  660 bits (1704), Expect = 0.0
 Identities = 265/531 (49%), Positives = 355/531 (66%), Gaps = 15/531 (2%)

Query: 4   RERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASS 63
           +     VLI+D+GSQ+T LI RRVRE  VY  +++   +LD     NP+ +ILSG P S 
Sbjct: 7   KSYLDVVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSV 66

Query: 64  LDIDSPQIPKEILE----SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNC 119
               +P +P+   +      +P+LGICYG Q++ Q LGG+ K  + +E+GR  I +    
Sbjct: 67  HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGS 126

Query: 120 SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179
            L   +   G  Q VWMSHGD+   +PEGFEV+A S       I + +R+ Y +Q+HPEV
Sbjct: 127 QLFGDL-PSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEV 185

Query: 180 VHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVG-NERVICAVSGGVDSTVA 238
            H+  G + + +F+  V G+  +W M    +E +  IK  VG +E VICA+SGGVDSTVA
Sbjct: 186 THSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVA 245

Query: 239 AFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD 298
           A L+++AIG  L CV VD+G +R  E E ++  FK   + P+  VDASERF+ KLK + D
Sbjct: 246 ATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSKLKGVTD 305

Query: 299 PETKRKVIGQLFIEVFEEEA----KKIG-GAQFLGQGTLYPDVIESISFFG---GPSSII 350
           PE KRK+IG  FIEVF+E A    +K+G    FL QGTLYPDVIES    G     S  I
Sbjct: 306 PEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTI 365

Query: 351 KSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGE 410
           KSHHNVGGLP+ M +KL+EPLK LFKDEVR LG+ L +P++F++RHP PGPGLA+R +G+
Sbjct: 366 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPGPGLAVRVLGD 425

Query: 411 ITEER-INILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRA 469
           +TE   ++ILR+ D I+   I  AG+Y +IWQAF V LPV++VGV GD+RT+ +V +LRA
Sbjct: 426 VTEGNALDILRQVDEIFINSIKDAGLYDEIWQAFAVFLPVKSVGVQGDQRTHSHVVALRA 485

Query: 470 VTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
           VTS DGMTAD+YH +  FL  V+ +I NEV+G+NRVVYDITSKPP+TIEWE
Sbjct: 486 VTSEDGMTADWYHFEHKFLDDVSRKICNEVRGVNRVVYDITSKPPSTIEWE 536


>gnl|CDD|162088 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing),
           C-terminal domain or B subunit.  This protein of purine
           de novo biosynthesis is well-conserved. However, it
           appears to split into two separate polypeptide chains in
           most of the Archaea. This C-terminal region would be the
           larger subunit.
          Length = 311

 Score =  501 bits (1292), Expect = e-142
 Identities = 198/310 (63%), Positives = 240/310 (77%), Gaps = 3/310 (0%)

Query: 211 EIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIIS 270
           E V  I+EQVG+ +VI A+SGGVDS+VAA L + AIG  LTCV VDHG +RK E E ++ 
Sbjct: 5   EAVEEIREQVGDAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVK 64

Query: 271 LFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQG 330
            F       L  VDA ERF+  LK + DPE KRK+IG++FIEVFE EAKKIG A++L QG
Sbjct: 65  TFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQG 124

Query: 331 TLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPD 390
           T+YPDVIES +   G + +IKSHHNVGGLPE M +KLVEPL+ELFKDEVR LGKEL LP+
Sbjct: 125 TIYPDVIESAA---GTAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGKELGLPE 181

Query: 391 SFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQ 450
             V RHP PGPGLA+R +GE+T+E++ ILR +DAI  EE+ KAG+Y K+WQAF VLLPV+
Sbjct: 182 EIVWRHPFPGPGLAVRVLGEVTKEKLEILRRADAIVIEELKKAGLYDKVWQAFAVLLPVK 241

Query: 451 TVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDIT 510
           +VGVMGD RTY YV +LRAV SIDGMTAD+     +FL +++ RI NEV G+NRVVYDIT
Sbjct: 242 SVGVMGDGRTYGYVIALRAVESIDGMTADWARLPYDFLERISNRITNEVPGVNRVVYDIT 301

Query: 511 SKPPATIEWE 520
           SKPPATIEWE
Sbjct: 302 SKPPATIEWE 311


>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated.
          Length = 307

 Score =  419 bits (1079), Expect = e-118
 Identities = 165/315 (52%), Positives = 214/315 (67%), Gaps = 12/315 (3%)

Query: 206 SSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEV 265
             + +E +  I+E++G+ + I A+SGGVDS+VAA L + AIG  LT V VD G MRK E 
Sbjct: 5   EKFIEEAIEEIREEIGDGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGET 64

Query: 266 ENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQ 325
           E I   F    N  LR+VDA +RF+  LK + DPE KRK+IG+ FI VFEE AK+IG A+
Sbjct: 65  ERIKETFSDMLN--LRIVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIG-AE 121

Query: 326 FLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKE 385
           +L QGT+ PD IES    GG    IKSHHNVGGLPE M +K+VEPL++L+KDEVR + + 
Sbjct: 122 YLVQGTIAPDWIESE---GG----IKSHHNVGGLPEGMVLKIVEPLRDLYKDEVREVARA 174

Query: 386 LRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTV 445
           L LP+   ER P PGPGLA+R IGE+TEE++ I+RE++AI  EE+ K G     WQ F  
Sbjct: 175 LGLPEEISERMPFPGPGLAVRIIGEVTEEKLEIVREANAIVEEEVEKYGP--DKWQYFAA 232

Query: 446 LLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRV 505
           LL V+  GV GD R Y ++ ++RAV S DGMTAD        L +++ RI +E+  + RV
Sbjct: 233 LLGVKATGVKGDNRVYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRITSEIPEVARV 292

Query: 506 VYDITSKPPATIEWE 520
           VYDIT KPPATIE+E
Sbjct: 293 VYDITPKPPATIEFE 307


>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing),
           N-terminal domain or A subunit.  separate polypeptide
           chains in most of the Archaea. This N-terminal region
           would be the smaller subunit.
          Length = 188

 Score =  232 bits (594), Expect = 2e-61
 Identities = 89/189 (47%), Positives = 134/189 (70%), Gaps = 3/189 (1%)

Query: 10  VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSP 69
           +L++DFGSQ+TQLIARR+RE  VY E++     L+  +E+NP+ IILSG P+S    ++P
Sbjct: 1   ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENAP 60

Query: 70  QIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKG 129
           +  ++I E  +P+LGICYG Q+M + LGG+   ++ RE+G+A +EI     L +G+    
Sbjct: 61  RADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGL---P 117

Query: 130 SKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLI 189
            +  VWMSHGD+V+ +PEGF+V+A+SD+ P A +A E++  Y VQFHPEV HT  G++L+
Sbjct: 118 DESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELL 177

Query: 190 DNFVHHVAG 198
           +NFV+ V G
Sbjct: 178 ENFVYDVCG 186


>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated.
          Length = 184

 Score =  140 bits (355), Expect = 1e-33
 Identities = 61/186 (32%), Positives = 104/186 (55%), Gaps = 9/186 (4%)

Query: 9   KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID- 67
           K++++D G Q+  LI R +R   V  ++I     ++  K      +ILSG P    DI+ 
Sbjct: 1   KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKA-FEDGLILSGGP----DIER 55

Query: 68  SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE 127
           +   P+ + E ++P+LGIC G Q++ ++ GG+    +  E+    +EI     +LKG+  
Sbjct: 56  AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGL-- 113

Query: 128 KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQ 187
              + +VW SH D+V+ +P+GFE++A SD      +  +++  Y VQFHPEV HT  G +
Sbjct: 114 -PPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEVAHTEYGEE 172

Query: 188 LIDNFV 193
           +  NF+
Sbjct: 173 IFKNFL 178


>gnl|CDD|180190 PRK05670, PRK05670, anthranilate synthase component II;
           Provisional.
          Length = 189

 Score = 73.6 bits (182), Expect = 1e-13
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 26/199 (13%)

Query: 9   KVLIID-FGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILS---GSPA 61
            +L+ID + S FT  + + + E     EV+ ++N    L+  +  NP AI+LS   G+PA
Sbjct: 1   MILLIDNYDS-FTYNLVQYLGELG--AEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPA 57

Query: 62  SSLDIDSPQIPKEILE--SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNC 119
                ++    + I E    +P+LG+C G Q + ++ GGK   ++    G+         
Sbjct: 58  -----EAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGS 112

Query: 120 SLLKGMWEKGSKQQVWMSH---GDQVEHIPEGFEVIA-SSDSTPFAFIADEKRKYYAVQF 175
            +  G+    +   V   H    D+ E +P+  EV A + D         E    Y VQF
Sbjct: 113 GIFAGL---PNPFTVTRYHSLVVDR-ESLPDCLEVTAWTDDGEIMGVRHKELP-IYGVQF 167

Query: 176 HPEVVHTVGGSQLIDNFVH 194
           HPE + T  G +L++NF+ 
Sbjct: 168 HPESILTEHGHKLLENFLE 186


>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
          Length = 720

 Score = 68.4 bits (168), Expect = 5e-12
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 11/197 (5%)

Query: 9   KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68
           +VL++D    F   +A   R++      + +  A +     NP  ++LS  P    D D 
Sbjct: 528 RVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDC 587

Query: 69  PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAF-IEIKKNCSLLKGMWE 127
                  L  N+P+ G+C G Q + ++ GG+         G+   I ++    L  G+  
Sbjct: 588 KATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGL-- 645

Query: 128 KGSKQQVWMSHG--DQVEHIPEGFEVIASS-DSTPFAFIADEKRKYYAVQFHPEVVHTVG 184
              +  V   H      E +P+   V A + D    A I  +     AVQFHPE + T+G
Sbjct: 646 -PEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMA-IEHKTLPVAAVQFHPESIMTLG 703

Query: 185 GS---QLIDNFVHHVAG 198
           G    ++I+N V  +AG
Sbjct: 704 GDVGLRIIENVVRLLAG 720


>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional.
          Length = 237

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 52  QAIILSGSPASSLD-ID-SPQIP---KEILESNIPLLGICYGQQIMCQSLGGKTK-NSQS 105
             +I++GS A   D +D S +     ++   + +PLLGICYG Q++  +LGG+   N   
Sbjct: 56  AGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAG 115

Query: 106 REFGRAFIEIKKNCS---LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAF 162
           RE G   +E+    +   L  G+  +       ++H   V  +P G  V+A S   P   
Sbjct: 116 RESGTVTVELHPAAADDPLFAGLPAQFPAH---LTHLQSVLRLPPGAVVLARSAQDPHQA 172

Query: 163 IADEKRKYYAVQFHPE 178
                   + VQFHPE
Sbjct: 173 FR-YGPHAWGVQFHPE 187


>gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional.
          Length = 240

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 16/138 (11%)

Query: 53  AIILSGSPASSLDIDSPQIPK------EILESNIPLLGICYGQQIMCQSLGGKT-KNSQS 105
           A +++GS A S   D P I        ++ E    LLG+C+G Q++   LGGK  + SQ 
Sbjct: 60  AYLVTGSKADSFGTD-PWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQG 118

Query: 106 REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFA--FI 163
              G    ++  +      M    ++  + +SH DQV  +PEG  VIASSD  PFA   I
Sbjct: 119 WGVGIHRYQLAAHAPW---MSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHI 175

Query: 164 ADEKRKYYAVQFHPEVVH 181
            D+       Q HPE VH
Sbjct: 176 GDQ---VLCFQGHPEFVH 190


>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha
           proteobacterial clade.  This model represents a small
           clade of anthranilate synthases from alpha
           proteobacteria and Nostoc (a cyanobacterium). This
           enzyme is the first step in the pathway for the
           biosynthesis of tryprophan from chorismate.
          Length = 717

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 5/193 (2%)

Query: 9   KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68
           ++L++D    F   +A  +R++      +   +A   F E+ P  ++LS  P    D D 
Sbjct: 518 RILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFDV 577

Query: 69  PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAF-IEIKKNCSLLKGMWE 127
                  L   +P+ G+C G Q M ++ GG          G+A  I +    +L  G+ E
Sbjct: 578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPE 637

Query: 128 KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGS- 186
           + +  + + S   + + +P    V A S       I   +    AVQFHPE + T+ G  
Sbjct: 638 RLTVGR-YHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGA 696

Query: 187 --QLIDNFVHHVA 197
              +I N V  +A
Sbjct: 697 GLAMIGNVVDRLA 709


>gnl|CDD|162320 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small
           subunit.  This model represents the whole of the small
           chain of the glutamine-dependent form (EC 6.3.5.5) of
           carbamoyl phosphate synthase, CPSase II. The C-terminal
           domain has glutamine amidotransferase activity. Note
           that the sequence from the mammalian urea cycle form has
           lost the active site Cys, resulting in an
           ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases
           of pyrimidine biosynthesis, arginine biosynthesis, and
           the urea cycle may be encoded by one or by several
           genes, depending on the species.
          Length = 358

 Score = 58.8 bits (143), Expect = 4e-09
 Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 55/194 (28%)

Query: 9   KVLIIDFGSQFTQLIARRVRESKVYCEVIAF--KNALDYFKEQNPQAIILSGSPASSLDI 66
           +V++IDFG +    I RR+   K  CEV         +  K+ NP  I LS  P      
Sbjct: 175 RVVVIDFGVKQN--ILRRL--VKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPG----- 225

Query: 67  DSPQIPKEI-----LESNIPLLGICYGQQIMCQSLGGKT---------KN--SQSREFGR 110
           D   +   I     L   IP+ GIC G Q++  + G KT          N   +    GR
Sbjct: 226 DPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLITGR 285

Query: 111 AFIEIK------KNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIA 164
             I  +         SL  G  E        ++H +  +   EG              I 
Sbjct: 286 VEITSQNHGYAVDPDSLPAGDLE--------VTHVNLNDGTVEG--------------IR 323

Query: 165 DEKRKYYAVQFHPE 178
            +    ++VQ+HPE
Sbjct: 324 HKDLPVFSVQYHPE 337


>gnl|CDD|161933 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate
           synthase or aminodeoxychorismate synthase.  This model
           describes the glutamine amidotransferase domain or
           peptide of the tryptophan-biosynthetic pathway enzyme
           anthranilate synthase or of the folate biosynthetic
           pathway enzyme para-aminobenzoate synthase. In at least
           one case, a single polypeptide from Bacillus subtilis
           was shown to have both functions. This model covers a
           subset of the sequences described by the pfam model
           GATase.
          Length = 188

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 21/196 (10%)

Query: 10  VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQN---PQAIILSGSPASSLDI 66
           VL+ID    FT  + +   E     EV+  +N     +E     P  I++S  P +    
Sbjct: 2   VLMIDNYDSFTYNLVQYFCELGA--EVVVKRNDSLTLQEIEALLPLLIVISPGPCTP--- 56

Query: 67  DSPQIPKEILE---SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKN-CSLL 122
           +   I  E +      +P+LG+C G Q M Q+ GG    + +   G+   EI+ N   + 
Sbjct: 57  NEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTS-EIEHNGAGIF 115

Query: 123 KGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDSTPFAFIADEKRK--YYAVQFHPE 178
           +G++   +       H   V  E +P  F V A  +      +A   R      VQFHPE
Sbjct: 116 RGLF---NPLTATRYHSLVVEPETLPTCFPVTAWEE-ENIEIMAIRHRDLPLEGVQFHPE 171

Query: 179 VVHTVGGSQLIDNFVH 194
            + +  G QL+ NF+H
Sbjct: 172 SILSEQGHQLLANFLH 187


>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II;
           Provisional.
          Length = 187

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 50  NPQAIILSGSPASSLDIDSPQIPKEILE---SNIPLLGICYGQQIMCQSLGGKTKNSQSR 106
            PQ I++S  P +    D   I  +++      +P+LG+C G Q M Q+ GGK   +   
Sbjct: 43  KPQKIVISPGPCTP---DEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKV 99

Query: 107 EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDSTPFAFIA 164
             G+          + +G+    +   V   H   VE   +P  FEV A S++     I 
Sbjct: 100 MHGKTSPITHNGEGVFRGL---ANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIR 156

Query: 165 DEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194
             +     VQFHPE + +  G QL+ NF+H
Sbjct: 157 HRQWDLEGVQFHPESILSEQGHQLLANFLH 186


>gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine
           amidotransferase/anthranilate phosphoribosyltransferase;
           Provisional.
          Length = 534

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 29/201 (14%)

Query: 9   KVLIIDFGSQFT----QLIARR-------VRESKVYCEVIAFKNALDYFKEQNPQAIILS 57
            +++ID    FT    Q I          VR  ++  E I         +  NP  I++S
Sbjct: 1   MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI---------EALNPSHIVIS 51

Query: 58  GSPASSLDID-SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIK 116
             P    +   S ++ +      +P+LG+C G Q +  + GGK  +++    G+    I 
Sbjct: 52  PGPGRPEEAGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILHGKT-SPID 109

Query: 117 KNCSLLKGMWEK-GSKQQVWMSHGDQVEH--IPEGFEVIASSDSTPFAFIADEKRKYYAV 173
            N    KG++    +       H   VE   +PE  EV A SD      I  ++   + V
Sbjct: 110 HNG---KGLFRGIPNPTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGV 166

Query: 174 QFHPEVVHTVGGSQLIDNFVH 194
           QFHPE + T  G +++ NF++
Sbjct: 167 QFHPESILTEEGKRILKNFLN 187


>gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 205

 Score = 54.4 bits (132), Expect = 8e-08
 Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 45/150 (30%)

Query: 73  KEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFG------------RAF-------- 112
           KE + S  PLLGIC G Q++ +S         S EFG            R F        
Sbjct: 66  KEAVASGKPLLGICLGMQLLFES---------SEEFGETEGLGLLPGRVRRFPPEEGLKV 116

Query: 113 -------IEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFI 163
                  +E+KK   LLKG+   G+   V+  H    +   E   V A++D    F A +
Sbjct: 117 PHMGWNQLELKKESPLLKGI-PDGA--YVYFVHSYYADPCDEE-YVAATTDYGVEFPAAV 172

Query: 164 ADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193
              K   +  QFHPE    V G +++ NFV
Sbjct: 173 --GKDNVFGAQFHPEKSGDV-GLKILKNFV 199


>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II;
           Provisional.
          Length = 193

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 50  NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFG 109
           NP  +++S  P +  +        E     +P+LG+C G Q + Q  GG+   ++    G
Sbjct: 43  NPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHG 102

Query: 110 RAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH--IPEGFEVIASSDSTPFAFIADEK 167
           +         S+ KG+    +   V   H   V++  +PE FE+ A ++    +   DE 
Sbjct: 103 KTSPIRHTGRSVFKGL---NNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSM--DEI 157

Query: 168 RKYY-------AVQFHPEVVHTVGGSQLIDNFV 193
             +        AVQFHPE + T  G QL+ NF+
Sbjct: 158 MGFQHKTLPIEAVQFHPESIKTEQGHQLLANFL 190


>gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional.
          Length = 239

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 39/148 (26%)

Query: 53  AIILSGSPASSLDIDSPQIPKEI------LESNIPLLGICYGQQIMCQSLGGKTKNSQSR 106
           A+I  G P S+ D D   I +EI      L+ N P LGIC G Q++ + LG +       
Sbjct: 56  AVIFGG-PMSANDPD-DFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARV---APH 110

Query: 107 EFGRAFIEIKKNCSLLKGMW-----EKGSKQQVWMSHGDQVEH-------IPEGFEVIAS 154
             GR   EI        G +     E G     W      V H       +P G E++A+
Sbjct: 111 PDGRV--EI--------GYYPLRPTEAGRALMHWPEM---VYHWHREGFDLPAGAELLAT 157

Query: 155 SDSTPF-AFIADEKRKYYAVQFHPEVVH 181
            D  P  AF   +    + +QFHPEV  
Sbjct: 158 GDDFPNQAFRYGDNA--WGLQFHPEVTR 183


>gnl|CDD|180812 PRK07053, PRK07053, glutamine amidotransferase; Provisional.
          Length = 234

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 54  IILSGSPASSLDIDS-PQIPKEI------LESNIPLLGICYGQQIMCQSLGGKTKNSQSR 106
           ++L G P    D +  P +  EI      L + +P LGIC G Q++ ++LG +      +
Sbjct: 52  VVL-GGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQK 110

Query: 107 EFGRAFIEI--KKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTP---FA 161
           E G A + +      S L+ +   G+   V   HGD  + +PEG  ++AS+ +     FA
Sbjct: 111 EIGWAPLTLTDAGRASPLRHL---GAGTPVLHWHGDTFD-LPEGATLLASTPACRHQAFA 166

Query: 162 FIADEKRKYYAVQFHPEV 179
           +         A+QFHPE 
Sbjct: 167 W----GNHVLALQFHPEA 180


>gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit;
           Reviewed.
          Length = 360

 Score = 50.1 bits (121), Expect = 1e-06
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 9   KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILS---GSPASSLD 65
           KV+ IDFG +    I R + E      V+      +     NP  + LS   G PA    
Sbjct: 179 KVVAIDFGVKRN--ILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPA---A 233

Query: 66  IDS--PQIPKEILESNIPLLGICYGQQIMCQSLGGKTK 101
           +D     I +E+LE  IP+ GIC G Q++  +LG KT 
Sbjct: 234 LDYAIEMI-RELLEKKIPIFGICLGHQLLALALGAKTY 270


>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit;
           Reviewed.
          Length = 354

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 49/191 (25%)

Query: 9   KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68
            V +IDFG  + + I R + +      V+ +  +L+  K  NP  I+LS  P    ++  
Sbjct: 169 HVALIDFG--YKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKEL-Q 225

Query: 69  PQIPK-EILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKG--- 124
           P +P+ + L S+ P+LGIC G Q++  +LG  T+      FG             +G   
Sbjct: 226 PYLPEIKKLISSYPILGICLGHQLIALALGADTEKLP---FGH------------RGANH 270

Query: 125 -MWEKGSKQQVWMS---HGDQVEHIPEGFEVIASS-DSTPF--AF--IADE--------K 167
            + +  +  +VWM+   H         G+ V   S D TP    F  + D         K
Sbjct: 271 PVIDL-TTGRVWMTSQNH---------GYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKK 320

Query: 168 RKYYAVQFHPE 178
           +   +VQFHPE
Sbjct: 321 KPVLSVQFHPE 331


>gnl|CDD|163334 TIGR03573, WbuX, N-acetyl sugar amidotransferase.  This enzyme has
           been implicated in the formation of the acetamido moiety
           (sugar-NC(=NH)CH3) which is found on some
           exopolysaccharides and is positively charged at neutral
           pH. The reaction involves ligation of ammonia with a
           sugar N-acetyl group, displacing water. In E. coli (O145
           strain) and Pseudomonas aeruginosa (O12 strain) this
           gene is known as wbuX and ifnA respectively and likely
           acts on sialic acid. In Campylobacter jejuni, the gene
           is known as pseA and acts on pseudaminic acid in the
           process of flagellin glycosylation. In other Pseudomonas
           strains and various organisms it is unclear what the
           identity of the sugar substrate is, and in fact, the
           phylogenetic tree of this family sports a considerably
           deep branching suggestive of possible major differences
           in substrate structure. Nevertheless, the family is
           characterized by a conserved tetracysteine motif
           (CxxC.....[GN]xCxxC) possibly indicative of a metal
           binding site, as well as an invariable contextual
           association with homologs of the HisH and HisF proteins
           known as WbuY and WbuZ, respectively. These two proteins
           are believed to supply the enzyme with ammonium by
           hydrolysis of glutamine and delivery through an ammonium
           conduit.
          Length = 343

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 210 KEIVSRIKEQVGNER--VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVEN 267
           +E+V +IK++ G  R   I  VSGG DST  A ++ + +G+N   V VD G+  +  V+N
Sbjct: 46  EELVDKIKKK-GGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKN 104

Query: 268 IISLFK 273
           + +L K
Sbjct: 105 LNNLIK 110


>gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 199

 Score = 46.0 bits (110), Expect = 3e-05
 Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 23/137 (16%)

Query: 73  KEILESNIPLLGICYGQQIMCQS--------LG---GKTKNSQSREF-----GRAFIEIK 116
           KE +E   P+LGIC G Q++ +S        LG   G  K  +S        G   ++  
Sbjct: 66  KEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL 125

Query: 117 KNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPFAFIADEKRKYYAVQF 175
           K   L KG+ E       +  H   V       +V+A+++   PF   A  K   YAVQF
Sbjct: 126 KESPLFKGIEEGS---YFYFVHSYYVPCEDPE-DVLATTEYGVPFC-SAVAKDNIYAVQF 180

Query: 176 HPEVVHTVGGSQLIDNF 192
           HPE      G +L+ NF
Sbjct: 181 HPEKSGKA-GLKLLKNF 196


>gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 210

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 37/185 (20%)

Query: 44  DYFKEQNPQAIILSGS---PASSLDIDSPQIPKEI---LESNIPLLGICYGQQIMCQS-- 95
           D    +N +A+IL G      +  +++S  +   I   +ES  PL GIC G QI+ +S  
Sbjct: 31  DPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90

Query: 96  -------------LG---GKTKNSQSREF-------GRAFIEIKKNCSLLKGMWEKGSKQ 132
                        LG   GK K  + ++F        R  I  K    LLKG+   G + 
Sbjct: 91  ETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGI---GDQS 147

Query: 133 QVWMSHGDQVEHIPEGFEVIASSDSTPFAFIAD-EKRKYYAVQFHPEVVHTVGGSQLIDN 191
             +  H  +     EG  +    D     F A  EK   +  QFHPE  HT  G +L++N
Sbjct: 148 FFYFIHSYRPTGA-EGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTH-GLKLLEN 205

Query: 192 FVHHV 196
           F+  V
Sbjct: 206 FIEFV 210


>gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 196

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 28/132 (21%)

Query: 81  PLLGICYGQQIM---------CQSLG---GKTKNSQSREF-----GRAFIEIKKNCSLLK 123
           P+LGIC G Q++            LG   G  K            G   +  +    L +
Sbjct: 72  PVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQ 131

Query: 124 GMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFIADEKRKYYAVQFHPEVVH 181
           G+ E GS    +  H   +   P     IA  +   PF A I   K  ++ VQFHPE   
Sbjct: 132 GI-EDGS--YFYFVHSYAM---PVNEYTIAQCNYGEPFSAAIQ--KDNFFGVQFHPERSG 183

Query: 182 TVGGSQLIDNFV 193
              G+QL+ NF+
Sbjct: 184 AA-GAQLLKNFL 194


>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 209

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 34/145 (23%), Positives = 49/145 (33%), Gaps = 48/145 (33%)

Query: 81  PLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKG----MWEKGSKQ---- 132
           P LGIC G Q++           +  E G           L+ G        G       
Sbjct: 79  PFLGICVGMQLLF---------ERGLEHGDT-----PGLGLIPGEVVRFQPDGPALKVPH 124

Query: 133 ----QVWMSHGDQVEH-IPEG----F------------EVIASSD-STPF-AFIADEKRK 169
                V  +    +   IP+G    F            +V+A +D   PF A +A +   
Sbjct: 125 MGWNTVDQTRDHPLFAGIPDGARFYFVHSYYAQPANPADVVAWTDYGGPFTAAVARDNL- 183

Query: 170 YYAVQFHPEVVHTVGGSQLIDNFVH 194
            +A QFHPE      G  L+ NF+ 
Sbjct: 184 -FATQFHPEKSQDA-GLALLRNFLA 206


>gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26.  These peptidases have
           gamma-glutamyl hydrolase activity; that is they catalyse
           the cleavage of the gamma-glutamyl bond in
           poly-gamma-glutamyl substrates. They are structurally
           related to pfam00117, but contain extensions in four
           loops and at the C terminus.
          Length = 219

 Score = 44.9 bits (107), Expect = 5e-05
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 73  KEILESNIPLLGICYGQQIMCQSLGG--------------KTKNSQSREFGRAFIEIKKN 118
           +  LE   P+LGIC G Q++  +LGG                     +      + ++  
Sbjct: 100 RAALERGKPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPG 159

Query: 119 CSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA-SSDSTPFAF-IADEKRKYYAVQFH 176
            SLL  +        V   H   ++ +  G  V A + D T  A    +       VQ+H
Sbjct: 160 -SLLARLLGAEEI-LVNSLHHQAIKRLAPGLRVEATAPDGTIEAIESPNAPYFVLGVQWH 217

Query: 177 PE 178
           PE
Sbjct: 218 PE 219


>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase.
          Length = 222

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 66/227 (29%)

Query: 3   KRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILSGS 59
             +++  +++ID    FT  + + + E  + C    ++N    ++  K +NP+ +++S  
Sbjct: 14  SSKQNGPIIVIDNYDSFTYNLCQYMGE--LGCHFEVYRNDELTVEELKRKNPRGVLISPG 71

Query: 60  PASSLDID-SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKN 118
           P +  D   S Q   E L   +PL G+C G Q + ++ GGK               ++  
Sbjct: 72  PGTPQDSGISLQTVLE-LGPLVPLFGVCMGLQCIGEAFGGKI--------------VRSP 116

Query: 119 CSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPF-------------AFIAD 165
             ++ G   K S           V +  +G E + S    PF              F +D
Sbjct: 117 FGVMHG---KSSP----------VHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSD 163

Query: 166 E----------------KRKY---YAVQFHPEVVHTVGGSQLIDNFV 193
           E                 RKY     VQFHPE + T  G  ++ NF+
Sbjct: 164 ELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI 210


>gnl|CDD|168720 PRK06895, PRK06895, putative anthranilate synthase component II;
           Provisional.
          Length = 190

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 7   SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI 66
           ++K+LII+    FT  +   +R+  V  +V+  ++ LD  + +N   I++S  P      
Sbjct: 1   ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVED-LDLDEVENFSHILISPGP------ 53

Query: 67  DSPQIPKEILE------SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRA-FIEIKKNC 119
           D P+   ++         +  +LG+C G Q +C+  GG+  N  +   G+   ++++ N 
Sbjct: 54  DVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNS 113

Query: 120 SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179
            L  G+ E+     ++ S     E+ P   E+ A  D      +  +    Y VQFHPE 
Sbjct: 114 PLFDGLPEE-FNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPES 172

Query: 180 VHTVGGSQLIDNFVHH 195
             +  G Q++ N++  
Sbjct: 173 YISEFGEQILRNWLAI 188


>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional.
          Length = 265

 Score = 44.0 bits (105), Expect = 9e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%)

Query: 212 IVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIG 247
           IV  I+E+V   G + V+  +SGG+DS V A+L  +A+G
Sbjct: 17  IVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALG 55



 Score = 31.7 bits (73), Expect = 0.41
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 368 VEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400
           + P+ +L+K +VR L + L +P+  +E+ P   
Sbjct: 159 LNPIGDLYKTQVRELARHLGVPEDIIEKPPSAD 191


>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine
           amidotransferase/anthranilate phosphoribosyltransferase;
           Provisional.
          Length = 531

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 8   SKVLIIDFGSQFTQLIARRVRESK----VYCEVIAFKNALDYFKEQNPQAIILSGSPASS 63
           + +L++D    FT  +A ++R +     +Y   I  +  ++     +   ++LS  P   
Sbjct: 2   ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVP 61

Query: 64  LDIDS-PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLL 122
            +    P++    L   +P++GIC G Q + ++ GG    +     G+A        ++ 
Sbjct: 62  SEAGCMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMF 120

Query: 123 KGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHT 182
            G+    +   V   H     +IP G  + A  +    A +  +  +    QFHPE + T
Sbjct: 121 AGL---TNPLPVARYHSLVGSNIPAGLTINAHFNGMVMA-VRHDADRVCGFQFHPESILT 176

Query: 183 VGGSQLID 190
             G++L++
Sbjct: 177 TQGARLLE 184


>gnl|CDD|178898 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.
          Length = 346

 Score = 43.1 bits (103), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)

Query: 224 RVICAVSGGVDSTVAAFLI----YEAIGINL 250
           RV+  +SGGVDS+VAA L+    YE IG+ +
Sbjct: 2   RVVVGMSGGVDSSVAAALLKEQGYEVIGVFM 32


>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase
           (glutamine-hydrolyzing).
          Length = 415

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 20/104 (19%)

Query: 6   RSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILSGSPAS 62
            S  V+  DFG      I RR+  +   C++    +   A +  K   P  ++ S  P  
Sbjct: 239 ESYHVIAYDFG--IKHNILRRL--ASYGCKITVVPSTWPASEALK-MKPDGVLFSNGPG- 292

Query: 63  SLDIDSPQIP------KEILESNIPLLGICYGQQIMCQSLGGKT 100
               D   +P      KE+L   +P+ GIC G Q++ Q+LGGKT
Sbjct: 293 ----DPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKT 331


>gnl|CDD|181035 PRK07567, PRK07567, glutamine amidotransferase; Provisional.
          Length = 242

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 28/146 (19%)

Query: 53  AIILSGSPASSLDIDSPQIPK----------------EILESNIPLLGICYGQQIMCQSL 96
            +I+ GSP    ++  P   K                E++  + P LG CYG   +    
Sbjct: 54  GVIVGGSP---FNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQ 110

Query: 97  GGKTKNSQSREFGRAFIEIKKNCS---LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA 153
           GG    +     G   + +        LL G+         ++ H + V  +P G  ++A
Sbjct: 111 GGVVDRTYGEPVGAVTVSLTDAGRADPLLAGL---PDTFTAFVGHKEAVSALPPGAVLLA 167

Query: 154 SSDSTPF-AFIADEKRKYYAVQFHPE 178
           +S + P   F        YA QFHPE
Sbjct: 168 TSPTCPVQMFRV--GENVYATQFHPE 191


>gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase,
           glutamine amidotransferase subunit.  This model
           represents the glutamine amidotransferase subunit (or
           domain, in eukaryotic systems) of imidazole glycerol
           phosphate synthase. This subunit catalyzes step 5 of
           histidine biosynthesis from PRPP. The other subunit, the
           cyclase, catalyzes step 6.
          Length = 196

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 23/139 (16%)

Query: 71  IPKEILESNIPLLGICYGQQIM---------CQSLG---GKTKNSQSR---EFGRAFIEI 115
             + ++    P+LGIC G Q++            LG   G     ++R     G   +  
Sbjct: 63  FVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHP 122

Query: 116 KKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPFAFIADEKRKYYAVQ 174
            K   LL G+ E       +  H        E   V+A +D    F     +K   +  Q
Sbjct: 123 VKESPLLNGIDEGAY---FYFVHSYYAV--CEEEAVLAYADYGEKFPAAV-QKGNIFGTQ 176

Query: 175 FHPEVVHTVGGSQLIDNFV 193
           FHPE      G +L++NF+
Sbjct: 177 FHPEKSGKT-GLKLLENFL 194


>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 201

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 24/139 (17%)

Query: 73  KEILESNIPLLGICYGQQIM---------CQSLG---------GKTKNSQSREFGRAFIE 114
           +++L    P+LGIC G Q+          C+ LG          +  N +    G   +E
Sbjct: 67  EQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELE 126

Query: 115 IKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQ 174
           I K   L +G+ E   K   +  H   V+   E   V A +        + +K   +A Q
Sbjct: 127 ILKQSPLYQGIPE---KSDFYFVHSFYVKCKDE--FVSAKAQYGHKFVASLQKDNIFATQ 181

Query: 175 FHPEVVHTVGGSQLIDNFV 193
           FHPE    + G +L++NF 
Sbjct: 182 FHPEKSQNL-GLKLLENFA 199


>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase
           glutamine amidotransferase component II; Validated.
          Length = 195

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 7/150 (4%)

Query: 47  KEQNPQAIILSGSPASSLDIDSPQIPKEILE---SNIPLLGICYGQQIMCQSLGGKTKNS 103
           +   P  +++S  P S    +   I  E++      IP+ G+C G Q + Q  GG+   +
Sbjct: 40  ENMKPDFLMISPGPCSP---NEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA 96

Query: 104 QSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFI 163
           +    G+  +      ++   +    +  + + S   + E +P+  EV + ++      I
Sbjct: 97  ERLMHGKTSLMHHDGKTIFSDIPNPFTATR-YHSLIVKKETLPDCLEVTSWTEEGEIMAI 155

Query: 164 ADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193
             +      VQFHPE + T  G +L+ NF+
Sbjct: 156 RHKTLPIEGVQFHPESIMTSHGKELLQNFI 185


>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II;
           Provisional.
          Length = 191

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 80  IPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG 139
           +P+LG+C G Q + Q+ G +   ++    G+          + +G+ +  +  + + S  
Sbjct: 73  LPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQPLTVTR-YHSLV 131

Query: 140 DQVEHIPEGFEVIASSDST----PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193
              + +P  FE+ A S+          I         VQFHPE + +  G QL+DNF+
Sbjct: 132 IAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFL 189


>gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF.
          Length = 538

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 24/141 (17%)

Query: 73  KEILESNIPLLGICYGQQIM---------CQSLG---GKTKNSQSRE------FGRAFIE 114
           +E ++++ P LGIC G Q++          + LG   G      S         G   ++
Sbjct: 73  REYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQ 132

Query: 115 IKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKR-KYYAV 173
           I K+  LL G+      + V+  H  +     E  + + ++ +    FIA  ++   +AV
Sbjct: 133 ITKDSELLDGV----GGRHVYFVHSYRATPSDENKDWVLATCNYGGEFIASVRKGNVHAV 188

Query: 174 QFHPEVVHTVGGSQLIDNFVH 194
           QFHPE     G S ++  F+ 
Sbjct: 189 QFHPEKSGATGLS-ILRRFLE 208


>gnl|CDD|161871 TIGR00420, trmU, tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase.
            tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (trmU, asuE, or mnmA) is involved in the biosynthesis of
           the modified nucleoside
           5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in
           the wobble position of some tRNAs. This enzyme appears
           not to occur in the Archaea.
          Length = 352

 Score = 38.1 bits (89), Expect = 0.005
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%)

Query: 224 RVICAVSGGVDSTVAAFLI----YEAIGINLTC 252
           +VI  +SGGVDS+V+A+L+    YE +G+ +  
Sbjct: 2   KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKN 34


>gnl|CDD|129369 TIGR00268, TIGR00268, conserved hypothetical protein TIGR00268.
           The N-terminal region of the model shows similarity to
           Argininosuccinate synthase proteins using PSI-blast and
           using the recognize protein identification server.
          Length = 252

 Score = 37.5 bits (87), Expect = 0.008
 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 42/215 (19%)

Query: 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRV 282
           ++V+ A SGGVDS++ A +  +A G  +  + V    +   E+E+ I + K         
Sbjct: 13  KKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSISPRELEDAIIIAKEI-GVNHEF 70

Query: 283 VDASERFIRKLKNIVDPETKRKV------IGQLFIEVFEEEAKKIGGAQFLGQGTLYPDV 336
           V           + +    +  V        ++ + +  +EA+K G          Y  V
Sbjct: 71  VKI---------DKMINPFRANVEERCYFCKKMVLSILVKEAEKRG----------YDVV 111

Query: 337 IESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKEL--FKDEVRLLGKELRLPDSFVE 394
           ++     G  +  +  H    G     +   V P  E    K E+R + K L +      
Sbjct: 112 VD-----GTNADDLFDHRP--GYRAVKEFNGVSPWAEFGITKKEIREIAKSLGISFPDKP 164

Query: 395 RHPCPGPGLAIRCIG--EITEERINILRESDAIYR 427
              C    LA R     EI EE++ ++ E++ + R
Sbjct: 165 SEAC----LASRFPFGREIDEEKLKMVDEAEEVLR 195


>gnl|CDD|162854 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase,
           N-terminal domain.  The only examples in which the
           wobble position of a tRNA must discriminate between G
           and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop)
           vs. UGG (Trp). In all bacteria, the wobble position of
           the tRNA(Ile) recognizing AUA is lysidine, a lysine
           derivative of cytidine. This family describes a protein
           domain found, apparently, in all bacteria in a single
           copy. Eukaryotic sequences appear to be organellar. The
           domain archictecture of this protein family is variable;
           some, including characterized proteins of E. coli and B.
           subtilis known to be tRNA(Ile)-lysidine synthetase,
           include a conserved 50-residue domain that many other
           members lack. This protein belongs to the ATP-binding
           PP-loop family ( pfam01171). It appears in the
           literature and protein databases as TilS, YacA, and
           putative cell cycle protein MesJ (a misnomer).
          Length = 189

 Score = 37.2 bits (87), Expect = 0.011
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 224 RVICAVSGGVDSTVAAFLIYEA---IGINLTCVLVDHG 258
           R++ AVSGGVDS     L+ +    + I L    VDHG
Sbjct: 1   RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38


>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II;
           Provisional.
          Length = 214

 Score = 36.6 bits (85), Expect = 0.015
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 1/112 (0%)

Query: 80  IPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG 139
            PLLG+C G Q +  + G     +     G+          +L G+ +  +  + + S  
Sbjct: 77  TPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTGVGVLAGLPDPFTATR-YHSLT 135

Query: 140 DQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDN 191
              E +P   EV A +DS     +   +   + VQFHPE V T GG +++ N
Sbjct: 136 ILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLAN 187


>gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase.
          Length = 918

 Score = 36.0 bits (83), Expect = 0.022
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 163 IADEKRKYYAVQFHPEVVHTVGGSQLIDNF 192
           I    R +Y +QFHPE + T  G Q+  NF
Sbjct: 302 IMHSTRPHYGLQFHPESIATCYGRQIFKNF 331


>gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional.
          Length = 235

 Score = 35.3 bits (82), Expect = 0.038
 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 33/145 (22%)

Query: 54  IILSG--SPASSLD----IDSP---QIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQ 104
           I++ G  SP ++ +     DS    ++  + +++   ++G+C G Q++ ++LG K ++S 
Sbjct: 50  IVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP 109

Query: 105 SREFGRAFIEI----KKNC-------SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA 153
            +E G   I +     K+        +L  G W           H D      +  +V+A
Sbjct: 110 EKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHW-----------HNDMPGLTDQA-KVLA 157

Query: 154 SSDSTPFAFIADEKRKYYAVQFHPE 178
           +S+  P   +       Y  Q H E
Sbjct: 158 TSEGCPRQIVQYSN-LVYGFQCHME 181


>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
            Provisional.
          Length = 1307

 Score = 35.1 bits (81), Expect = 0.049
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 25/106 (23%)

Query: 83   LGICYGQQIMC-----------QSLGGKTKNSQSR----EFGR-----AFIEIKKNCS-L 121
            LG+C G Q+M              LG     SQ R    E GR       + I+ + + +
Sbjct: 1130 LGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIM 1189

Query: 122  LKGMWEKGSKQQVWMSHGDQVEHIPEG--FEVIASSDSTPFAFIAD 165
            LKGM  +GS   VW +HG+   + P+    + +  S+  P  +  D
Sbjct: 1190 LKGM--EGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDD 1233


>gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed.
          Length = 326

 Score = 34.2 bits (79), Expect = 0.093
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 210 KEIVSRIKEQVGNE----RVICAVSGGVDSTVAAFLIYEAIG 247
           + I + I+EQV        V+  +SGG+DS+V A L   A+G
Sbjct: 17  ERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALG 58


>gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
            single chain form.  This model represents a
            single-molecule form of phosphoribosylformylglycinamidine
            synthase, also called FGAM synthase, an enzyme of purine
            de novo biosynthesis. This form is found mostly in
            eukaryotes and Proteobacteria. In Bacillus subtilis PurL
            (FGAM synthase II) and PurQ (FGAM synthase I), homologous
            to different parts of this model, perform the equivalent
            function; the unrelated small protein PurS is also
            required and may be a third subunit.
          Length = 1310

 Score = 33.6 bits (77), Expect = 0.14
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 15/97 (15%)

Query: 83   LGICYGQQIMCQSLG--GKTK--------NSQSREFGRAFIEIKKNCSL-LKGMWEKGSK 131
            LG+C G Q++   L     T+        NS+  E   A + + ++ S+ L+GM   GS+
Sbjct: 1148 LGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGM--AGSR 1205

Query: 132  QQVWMSHGD-QVE-HIPEGFEVIASSDSTPFAFIADE 166
              V ++HG+       PE      +S      +I D+
Sbjct: 1206 LPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDD 1242


>gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 200

 Score = 33.3 bits (77), Expect = 0.15
 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 26/138 (18%)

Query: 74  EILESNIPLLGICYGQQIMCQSL--GGKTK-----NSQSREF---------GRAFIEIKK 117
           E   S  P LGIC G Q++ +S   GG  +       +   F         G   +++ K
Sbjct: 66  EAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVK 125

Query: 118 NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFIADEKRKYYAVQF 175
           +C L +G+      + V+  H        E + V+A++D    F A + ++    +  QF
Sbjct: 126 DCPLFEGI----DGEYVYFVHSYYAYPDDEDY-VVATTDYGIEFPAAVCND--NVFGTQF 178

Query: 176 HPEVVHTVGGSQLIDNFV 193
           HPE      G ++++NFV
Sbjct: 179 HPE-KSGETGLKILENFV 195


>gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated.
          Length = 533

 Score = 33.5 bits (78), Expect = 0.15
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 77  ESNIPLLGICYGQQIMC 93
           E+NIP LGIC G Q+  
Sbjct: 370 ENNIPFLGICLGMQLAV 386


>gnl|CDD|162548 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal
           clade.  This model represents the fungal clade of a
           para-aminobenzoate synthesis enzyme,
           aminodeoxychorismate synthase, which acts on chorismate
           in a pathway that yields PABA, a precursor of folate.
          Length = 742

 Score = 33.0 bits (75), Expect = 0.18
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 7/147 (4%)

Query: 52  QAIILSGSPASSLDIDSPQIPKEILESN----IPLLGICYGQQIMCQSLGGKTKNSQSRE 107
            AI++   P +  +     I  E+ E      +P+LGIC G Q +C + G       + +
Sbjct: 55  DAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPK 114

Query: 108 FGRAFIEIKKNCSLLKGMWE-KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADE 166
            G+ +     + ++  G++  K ++     ++ + ++ +               +    +
Sbjct: 115 HGQVYEMHTNDAAIFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMS-AQTK 173

Query: 167 KRKYYAVQFHPEVVHTVGGS-QLIDNF 192
           K+ ++ VQ+HPE   +  GS +L+ NF
Sbjct: 174 KKPWFGVQYHPESCCSELGSGKLVSNF 200


>gnl|CDD|173128 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA; Provisional.
          Length = 360

 Score = 33.0 bits (75), Expect = 0.20
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 222 NERVICAVSGGVDSTVAAFLIYEA 245
           N+RV+  +SGG DS+VAA L+ EA
Sbjct: 5   NKRVLLGMSGGTDSSVAAMLLLEA 28


>gnl|CDD|161924 TIGR00552, nadE, NAD+ synthetase.  NAD+ synthetase is a nearly
           ubiquitous enzyme for the final step in the biosynthesis
           of the essensial cofactor NAD. The member of this family
           from Bacillus subtilis is a strictly NH(3)-dependent
           NAD(+) synthetase of 272 amino acids. Proteins
           consisting only of the domain modeled here may be named
           as NH3-dependent NAD+ synthetase. Amidotransferase
           activity may reside in a separate protein, or not be
           present. Some other members of the family, such as from
           Mycobacterium tuberculosis, are considerably longer,
           contain an apparent amidotransferase domain, and show
           glutamine-dependent as well as NH(3)-dependent activity.
          Length = 250

 Score = 32.4 bits (74), Expect = 0.28
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 30/203 (14%)

Query: 205 MSSYHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHG-FM 260
           +  Y +EI   ++  V   G + V+  +SGG+DS V A L  EA+G     +L+ H    
Sbjct: 2   LIKYVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQT 61

Query: 261 RKNEVENIISLFKG----YPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEE 316
            + +V++ ++L +     Y N  +  + AS             + + +   +L   + + 
Sbjct: 62  PEQDVQDALALAEPLGINYKNIDIAPIAASF------------QAQTETGDELSDFLAKG 109

Query: 317 EAK-KIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKL-VEPLKEL 374
             K ++  A       LY    +      G  +  KS   +G   ++ D    + P+ +L
Sbjct: 110 NLKARLRMA------ALYAIANKHNLLVLGTGN--KSELMLGYFTKYGDGGCDIAPIGDL 161

Query: 375 FKDEVRLLGKELRLPDSFVERHP 397
           FK +V  L K L +P+  +E+ P
Sbjct: 162 FKTQVYELAKRLNVPERIIEKPP 184


>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II;
           Provisional.
          Length = 208

 Score = 32.5 bits (74), Expect = 0.30
 Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 27/168 (16%)

Query: 50  NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK-------- 101
           NP  I LS  P    D  +     +     IPLLGIC G Q + +  GGK +        
Sbjct: 44  NPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCGPVHGT 103

Query: 102 ---------NSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVI 152
                      QS  F     +++ +   +      G K  +   H       P+G E +
Sbjct: 104 TDNMILTDAGVQSPVFAGLATDVEPDHPEI-----PGRKVPIARYHSLGCVVAPDGMESL 158

Query: 153 ASSDST--PFAFIADEKRKYYAV--QFHPEVVHTVGGSQLIDNFVHHV 196
            +  S   P   +A E     A+  QFHPE V +  G  ++   V  +
Sbjct: 159 GTCSSEIGPVI-MAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQL 205


>gnl|CDD|161829 TIGR00342, TIGR00342, thiazole biosynthesis/tRNA modification
           protein ThiI.  The protein product of the thiI gene is
           required for the synthesis of the thiazole moiety in
           thiamine biosynthesis. It also acts in the generation of
           4-thiouridine in tRNA, and may occur in species (such as
           Mycoplasma genitalium) that lack de novo thiamine
           biosynthesis.
          Length = 371

 Score = 31.6 bits (72), Expect = 0.52
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENII-----SLFKGYPN 277
            +V+  +SGG+DS VAAF++ +  G  +  V   +      +    +     SL +   +
Sbjct: 173 GKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVERLANSLNETGGS 231

Query: 278 FPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGG 323
             L V D       ++ +I+       +  ++  +   + A+K G 
Sbjct: 232 VKLYVFDF-TDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGC 276


>gnl|CDD|161825 TIGR00337, PyrG, CTP synthase.  CTP synthase is involved in
           pyrimidine ribonucleotide/ribonucleoside metabolism. The
           enzyme catalyzes the reaction L-glutamine + H2O + UTP +
           ATP = CTP + phosphate + ADP + L-glutamate. The enzyme
           exists as a dimer of identical chains that aggregates as
           a tetramer. This gene has been found circa 500 bp 5'
           upstream of enolase in both beta (Nitrosomonas europaea)
           and gamma (E.coli) subdivisions of proteobacterium (FEMS
           Microbiol Lett 1998 Aug 1;165(1):153-7).
          Length = 525

 Score = 31.5 bits (72), Expect = 0.60
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 77  ESNIPLLGICYGQQIM----CQSLGGKTKNSQSREF 108
           E+NIP LGIC G Q+      +++ G  K + S EF
Sbjct: 370 ENNIPFLGICLGMQLAVIEFARNVLGL-KGANSTEF 404


>gnl|CDD|177961 PLN02327, PLN02327, CTP synthase.
          Length = 557

 Score = 31.1 bits (71), Expect = 0.66
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 77  ESNIPLLGICYGQQIM----CQSLGGKTKNSQSREF 108
           E+ +P LGIC G QI      +S+ G  K++ S EF
Sbjct: 389 ENKVPYLGICLGMQIAVIEFARSVLG-LKDANSTEF 423


>gnl|CDD|169417 PRK08384, PRK08384, thiamine biosynthesis protein ThiI;
           Provisional.
          Length = 381

 Score = 31.1 bits (70), Expect = 0.72
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 28/188 (14%)

Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGY---PNFPL 280
           +V+  +SGG+DS VAAFL+ +  G+ +  V +  G     +V  I +  K Y       L
Sbjct: 182 KVVALLSGGIDSPVAAFLMMKR-GVEVIPVHIYMGEKTLEKVRKIWNQLKKYHYGGKAEL 240

Query: 281 RVVDASER--FIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIE 338
            VV   ER   I+KLK +            + ++  +  AK+ G      +G +  D + 
Sbjct: 241 IVVKPQERERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFG-----AKGIVMGDSLG 295

Query: 339 SISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELR------LPDS- 391
            ++         ++  N+  + +  D+ +  PL  + K+E+  + K +       LP+  
Sbjct: 296 QVA--------SQTLENMYIVSQASDLPIYRPLIGMDKEEIVAIAKTIGTFELSTLPEDE 347

Query: 392 --FVERHP 397
             F+ +HP
Sbjct: 348 IPFIPKHP 355


>gnl|CDD|181103 PRK07757, PRK07757, acetyltransferase; Provisional.
          Length = 152

 Score = 30.9 bits (71), Expect = 0.77
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 290 IRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG 322
           IR L   V  + + + IG++ +E   EEA+++G
Sbjct: 68  IRSL--AVSEDYRGQGIGRMLVEACLEEARELG 98


>gnl|CDD|169396 PRK08349, PRK08349, hypothetical protein; Validated.
          Length = 198

 Score = 30.1 bits (68), Expect = 1.5
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLR-- 281
           + +  +S G+DS VA +L+    G+ +  V       ++ +V  ++   +      L+  
Sbjct: 2   KAVALLSSGIDSPVAIYLMLRR-GVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDP 60

Query: 282 -VVDASE 287
            VVDA E
Sbjct: 61  VVVDAFE 67


>gnl|CDD|184330 PRK13794, PRK13794, hypothetical protein; Provisional.
          Length = 479

 Score = 30.0 bits (68), Expect = 1.6
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 204 VMSSYHKEIVSRIKEQVG--NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR 261
           V+  Y +  +  I+      N+ V  A SGG DS     L  +A+GIN   +  D G   
Sbjct: 227 VLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEF 286

Query: 262 KNEVENI 268
              +EN+
Sbjct: 287 PETLENV 293


>gnl|CDD|181483 PRK08576, PRK08576, hypothetical protein; Provisional.
          Length = 438

 Score = 29.7 bits (67), Expect = 1.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 211 EIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGF 259
           +   +   +     VI   SGG DST A  L  +A G ++T V VD G+
Sbjct: 223 KASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFG-DVTAVYVDTGY 270


>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase;
          Validated.
          Length = 476

 Score = 30.0 bits (68), Expect = 1.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 54 IILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQ 94
          II  GS   S  + + ++ KEIL  +  ++GIC G QI+ +
Sbjct: 41 IIPGGSLVESGSL-TDELKKEILNFDGYIIGICSGFQILSE 80


>gnl|CDD|163411 TIGR03699, mena_SCO4550, menaquinone biosynthesis protein, SCO4550
           family.  members of this protein family are involved in
           menaquinone biosynthesis by an alternate pathway via
           futalosine.
          Length = 340

 Score = 29.9 bits (68), Expect = 1.7
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 316 EEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHH 354
           EE    GG Q L QG + PD+   + ++      IK+  
Sbjct: 82  EELVAYGGTQILLQGGVNPDL--GLDYYEDLFRAIKARF 118


>gnl|CDD|129588 TIGR00497, hsdM, type I restriction system adenine methylase
           (hsdM).  Function: methylation of specific adenine
           residues; required for both restriction and modification
           activities. The ECOR124/3 I enzyme recognizes
           5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257:
           960-969 (1996)).
          Length = 501

 Score = 29.5 bits (66), Expect = 1.9
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 231 GGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFI 290
            G + T+  +L+ +   ++    L  + F   +   +I+ L K     P+  +D S  F+
Sbjct: 363 EGKEQTIRKYLVDQNF-VDAVIQLPSNLFSTTSIATSILVLKKNRKKDPIFFIDGSNEFV 421

Query: 291 RKLKNIVDPETKRKVIGQLFIEVFEE 316
           R+ KN        + I   F    EE
Sbjct: 422 REKKNNRLSPKNIEKIVDCFNSKKEE 447


>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
           putative.  This family consists of proteins restricted
           to and found as paralogous pairs (typically close
           together) in species of Pyrococcus, a hyperthermophilic
           archaeal genus. Members are always found close to other
           genes of threonine biosynthesis and appear to represent
           the Pyrococcal form of aspartate kinase. Alignment to
           aspartokinase III from E. coli shows that 300 N-terminal
           and 20 C-terminal amino acids are homologous, but the
           form in Pyrococcus lacks ~ 100 amino acids in between.
          Length = 327

 Score = 29.8 bits (67), Expect = 2.0
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 66  IDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQS-----REFGRAFIEIKK--- 117
            + P +PKE L   I  LG      I  + + GK  +         +FG AFI+IKK   
Sbjct: 86  FNPPDLPKEALRDYILSLGERLSAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKR 145

Query: 118 NCSLLKGMWEKG 129
           N  +L  + E G
Sbjct: 146 NAKILYEVLESG 157


>gnl|CDD|180287 PRK05849, PRK05849, hypothetical protein; Provisional.
          Length = 783

 Score = 29.6 bits (67), Expect = 2.0
 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 21/137 (15%)

Query: 362 HMDMKLVEPLKELF-KDEVRLLGKELRLPDSFVERHPCPGPGL---AIRCIGEITEERIN 417
            +D KL E L   F ++E++ +   L        R   P  GL    +  I ++ E    
Sbjct: 369 TLDKKLEELLPGGFSENEIKRIEFSLLK---LTNRIISPKSGLFRKDLEKIEKLEERYKE 425

Query: 418 ILRESDA----IYR--EEIHK------AGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVC 465
           +L  +      IY   E+  +      AGI R  + A  +L  +  +G +  E    ++ 
Sbjct: 426 LLNSNLDPLDKIYWLLEDCKRYGTLPFAGIARAAFVATQLLKSLVEIGALSQEELDAFLN 485

Query: 466 SLRAVTSIDGMTADFYH 482
           SL  V+    ++ D   
Sbjct: 486 SLNTVSKE--LSKDLNS 500


>gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ. 
          Length = 475

 Score = 29.4 bits (66), Expect = 2.2
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 29  ESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLD---IDSPQIPKEILE--SNIP-L 82
             + + + +   ++L         A+I+ GS ++  D   +      +EIL+       +
Sbjct: 268 RYEAFVKFLDLDDSLT-----GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIV 322

Query: 83  LGICYGQQIMCQSLGGKTKNSQSR 106
           +GIC G Q++ + L  K K     
Sbjct: 323 IGICGGYQMLGKELIDKEKKESDV 346


>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
          Length = 562

 Score = 29.6 bits (67), Expect = 2.2
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 108 FGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHI-----PEGFEVI 152
           FG+ F +IKK   L+  + +K    ++W  +G++  +I     P  FE+ 
Sbjct: 52  FGKPFRDIKKG-QLINSINKKDLLVELWFEYGEKEYYIKRGIKPNVFEIY 100


>gnl|CDD|182781 PRK10854, PRK10854, exopolyphosphatase; Provisional.
          Length = 513

 Score = 29.3 bits (66), Expect = 2.6
 Identities = 34/93 (36%), Positives = 39/93 (41%), Gaps = 17/93 (18%)

Query: 345 GPSSIIKSHHNV-------GGL--PEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVER 395
           G S  IK+ H V        GL  PE ++M + E LK   K+        L LP    ER
Sbjct: 215 GASGTIKAAHEVLVEMGEKDGLITPERLEMLVKEVLK--HKNF-----AALSLPGLSEER 267

Query: 396 HPCPGPGLAIRCIGEITEERINILRESDAIYRE 428
                PGLAI C G      I  LR SD   RE
Sbjct: 268 KTVFVPGLAILC-GVFDALAIRELRLSDGALRE 299


>gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional.
          Length = 488

 Score = 28.9 bits (66), Expect = 3.0
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 14/57 (24%)

Query: 50  NPQAIILSGSP----------ASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSL 96
           +   +IL GS            S  D     I +       P+LGIC G Q++ + +
Sbjct: 290 DADLVILPGSKNTIADLAWLRESGWDEA---I-RAHARRGGPVLGICGGYQMLGRRI 342


>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ;
           Validated.
          Length = 392

 Score = 28.9 bits (65), Expect = 3.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 367 LVEPLKELFKDEVRLLGKELRLPD 390
           LVEP  EL +DEV    + L +PD
Sbjct: 8   LVEPAAELTRDEVARYSRHLIIPD 31


>gnl|CDD|179268 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional.
          Length = 482

 Score = 29.0 bits (66), Expect = 3.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 223 ERVICAVSGGVDSTVAAFLI 242
           E V+  +SGG DS VA++++
Sbjct: 178 EDVLSLISGGFDSGVASYML 197


>gnl|CDD|181332 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
           Provisional.
          Length = 450

 Score = 28.7 bits (65), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 327 LGQGTLYPDVIESISFFGGPSS 348
           L QG L  DV E+I++   P+S
Sbjct: 411 LQQGGLPVDVAETIAWLASPAS 432


>gnl|CDD|149319 pfam08190, PIH1, pre-RNA processing PIH1/Nop17.  This domain is
           involved in pre-rRNA processing. It has has been shown
           to be required either for nucleolar retention or correct
           assembly of the box C/D snoRNP in Saccharomyces
           cerevisiae. The C-terminal region of this family has
           similarity to the CS domain pfam04969.
          Length = 325

 Score = 28.5 bits (64), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 171 YAVQFHPEVVHTVGGSQLIDNFVHHVA--GIQDN 202
           Y V F+P+ +      QL  NF+   A  GI+  
Sbjct: 100 YDVVFNPDTLQKAEKDQLFRNFLIQTALEGIEQK 133


>gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
            Provisional.
          Length = 1290

 Score = 28.6 bits (65), Expect = 3.9
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 13/68 (19%)

Query: 83   LGICYGQQIMCQ--------SLGGKTKNSQSREF-GR-AFIEIKKNCSL-LKGMWEKGSK 131
            LG+C G Q+M              +   ++S +F  R + +E++++ S+ L+GM   GS+
Sbjct: 1128 LGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGM--AGSR 1185

Query: 132  QQVWMSHG 139
              + ++HG
Sbjct: 1186 LPIAVAHG 1193


>gnl|CDD|148238 pfam06508, ExsB, ExsB.  This family includes putative
           transcriptional regulators from Bacteria and Archaea.
          Length = 137

 Score = 28.3 bits (64), Expect = 4.4
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283
           + +  +SGG+DST       +  G  +  +  D+G     E+E    + K       ++V
Sbjct: 1   KAVVLLSGGLDSTTCLA-WAKKEGYEVYALTFDYGQRHSKELECAKKIAKAL-GVEHKIV 58

Query: 284 DASERFIRKL 293
           D    F++++
Sbjct: 59  DLD--FLKQI 66


>gnl|CDD|180729 PRK06850, PRK06850, hypothetical protein; Provisional.
          Length = 507

 Score = 28.0 bits (63), Expect = 5.8
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 10/45 (22%)

Query: 210 KEIVSRIKEQVGNERVICA--------VSGGVDSTVAAFLIYEAI 246
            E +  + E++  + + CA         SGG DST    L++ A+
Sbjct: 16  GEPIEELIEEI--QELYCADNRPWVIGYSGGKDSTAVLQLVWNAL 58


>gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c.  This model describes a
           family of redox proteins related to the succinate
           dehydrogenases and fumarate reductases of E. coli,
           mitochondria, and other well-characterized systems. A
           member of this family from Shewanella frigidimarina
           NCIMB400 is characterized as a water-soluble periplasmic
           protein with four heme groups, a non-covalently bound
           FAD, and essentially unidirectional fumarate reductase
           activity. At least seven distinct members of this family
           are found in Shewanella oneidensis, a species able to
           use a wide variety of pathways for respiraton.
          Length = 439

 Score = 28.1 bits (63), Expect = 5.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 150 EVIASSDSTPFAFIADEKRK-----YYAVQFHPEVVHTVGG 185
           E +AS   TPF    D         YYA++  P V HT+GG
Sbjct: 346 EYVASGKDTPFGRPMDMPDDLSKSPYYAIKVTPGVHHTMGG 386


>gnl|CDD|140333 PTZ00312, PTZ00312, inositol-1,4,5-triphosphate 5-phosphatase;
           Provisional.
          Length = 356

 Score = 27.9 bits (62), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 367 LVEPLKELFKDEVRLLGKELRLPDSFVE 394
           L+E LKE  + +V++  K +R PD F E
Sbjct: 146 LLEWLKEKMQIDVKIEVKRVRAPDRFWE 173


>gnl|CDD|162511 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
           I.  In some species, phosphoribosylformylglycinamidine
           synthase is composed of a single polypeptide chain. This
           model describes the PurQ protein of Bacillus subtilis
           (where PurL, PurQ, and PurS are required for
           phosphoribosylformylglycinamidine synthase activity) and
           functionally equivalent proteins from other bacteria and
           archaea.
          Length = 227

 Score = 27.7 bits (62), Expect = 6.6
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 6/73 (8%)

Query: 73  KEILESNIPLLGICYGQQIMCQS--LGGKTKNSQSREFGRAFIEIKK---NCSLLKGMWE 127
           +E  E  +P+LGIC G QI+ ++  L G    + S  F   ++ ++    +    K  ++
Sbjct: 72  REFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKN-YK 130

Query: 128 KGSKQQVWMSHGD 140
           KG   ++ ++HG+
Sbjct: 131 KGEVIRIPIAHGE 143


>gnl|CDD|179376 PRK02134, PRK02134, hypothetical protein; Provisional.
          Length = 249

 Score = 28.0 bits (63), Expect = 6.7
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 9/45 (20%)

Query: 325 QFLGQGTLYPDVIES---------ISFFGGPSSIIKSHHNVGGLP 360
           Q   +GTL  + I           +S FG   + + SHH+V  LP
Sbjct: 89  QLAEEGTLPLEEIAQELAAQYERFLSLFGRKPTHLDSHHHVHMLP 133


>gnl|CDD|184346 PRK13820, PRK13820, argininosuccinate synthase; Provisional.
          Length = 394

 Score = 28.0 bits (63), Expect = 6.7
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 221 GNERVICAVSGGVDSTVAAFLIYEAIGIN-LTCVLVDHG-----FMRKNEVENIISLFKG 274
             ++V+ A SGG+D++V   L+ E  G + +  V VD G          E    +   K 
Sbjct: 1   MMKKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGD-KH 59

Query: 275 YPNFPLRVVDASERFIRKL 293
           Y       +DA E F +  
Sbjct: 60  Y------TIDAKEEFAKDY 72


>gnl|CDD|185607 PTZ00422, PTZ00422, glideosome-associated protein 50; Provisional.
          Length = 394

 Score = 27.9 bits (62), Expect = 7.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%)

Query: 202 NWVMSSYHKEIV-SRIKEQVGNERVICAVS------GGVDS 235
           NW   S  +++V S +K+   NERV   VS      GGVD 
Sbjct: 34  NWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDG 74


>gnl|CDD|179756 PRK04160, PRK04160, diphthine synthase; Provisional.
          Length = 258

 Score = 27.5 bits (62), Expect = 9.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 402 GLAIRCIGEITEERINILRESDAIYRE 428
           GL +    +IT + +  LR +D +Y E
Sbjct: 6   GLGLYDERDITLKGLEALRNADKVYAE 32


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,778,094
Number of extensions: 592356
Number of successful extensions: 1408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 116
Length of query: 520
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,876,889
Effective search space: 1636047158
Effective search space used: 1636047158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)