RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] (520 letters) >gnl|CDD|178842 PRK00074, guaA, GMP synthase; Reviewed. Length = 511 Score = 951 bits (2461), Expect = 0.0 Identities = 300/513 (58%), Positives = 391/513 (76%), Gaps = 5/513 (0%) Query: 8 SKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID 67 K+LI+DFGSQ+TQLIARRVRE VY E++ + + + + NP+ IILSG PAS + Sbjct: 4 DKILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEG 63 Query: 68 SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE 127 +P+ EI E +P+LGICYG Q+M LGGK + + RE+GRA +E+ + L KG+ Sbjct: 64 APRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREYGRAELEVDNDSPLFKGL-- 121 Query: 128 KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQ 187 +Q VWMSHGD+V +PEGF+VIAS+++ P A IA+E+RK+Y VQFHPEV HT G + Sbjct: 122 -PEEQDVWMSHGDKVTELPEGFKVIASTENCPIAAIANEERKFYGVQFHPEVTHTPQGKK 180 Query: 188 LIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIG 247 L++NFV + G + +W M ++ +E + I+EQVG+++VI +SGGVDS+VAA L+++AIG Sbjct: 181 LLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKKVILGLSGGVDSSVAAVLLHKAIG 240 Query: 248 INLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIG 307 LTCV VDHG +RKNE E ++ +F+ + L VDAS+RF+ L + DPE KRK+IG Sbjct: 241 DQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLSALAGVTDPEEKRKIIG 300 Query: 308 QLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKL 367 + FIEVFEEEAKK+GG +FL QGTLYPDVIES ++ IKSHHNVGGLPE M +KL Sbjct: 301 REFIEVFEEEAKKLGGVKFLAQGTLYPDVIESGGT--KKAATIKSHHNVGGLPEDMKLKL 358 Query: 368 VEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYR 427 VEPL+ELFKDEVR LG EL LP+ V RHP PGPGLAIR +GE+T+E+++ILRE+DAI+ Sbjct: 359 VEPLRELFKDEVRKLGLELGLPEEIVYRHPFPGPGLAIRILGEVTKEKLDILREADAIFI 418 Query: 428 EEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNF 487 EE+ KAG+Y KIWQAF VLLPV++VGVMGD RTY+YV +LRAVTSIDGMTAD+ +F Sbjct: 419 EELRKAGLYDKIWQAFAVLLPVKSVGVMGDGRTYDYVVALRAVTSIDGMTADWARLPYDF 478 Query: 488 LSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 L +++ RI+NEVKG+NRVVYDITSKPPATIEWE Sbjct: 479 LEKISNRIINEVKGVNRVVYDITSKPPATIEWE 511 >gnl|CDD|177981 PLN02347, PLN02347, GMP synthetase. Length = 536 Score = 660 bits (1704), Expect = 0.0 Identities = 265/531 (49%), Positives = 355/531 (66%), Gaps = 15/531 (2%) Query: 4 RERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASS 63 + VLI+D+GSQ+T LI RRVRE VY +++ +LD NP+ +ILSG P S Sbjct: 7 KSYLDVVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSV 66 Query: 64 LDIDSPQIPKEILE----SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNC 119 +P +P+ + +P+LGICYG Q++ Q LGG+ K + +E+GR I + Sbjct: 67 HVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRMEIRVVCGS 126 Query: 120 SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179 L + G Q VWMSHGD+ +PEGFEV+A S I + +R+ Y +Q+HPEV Sbjct: 127 QLFGDL-PSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIYGLQYHPEV 185 Query: 180 VHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVG-NERVICAVSGGVDSTVA 238 H+ G + + +F+ V G+ +W M +E + IK VG +E VICA+SGGVDSTVA Sbjct: 186 THSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVICALSGGVDSTVA 245 Query: 239 AFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVD 298 A L+++AIG L CV VD+G +R E E ++ FK + P+ VDASERF+ KLK + D Sbjct: 246 ATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSKLKGVTD 305 Query: 299 PETKRKVIGQLFIEVFEEEA----KKIG-GAQFLGQGTLYPDVIESISFFG---GPSSII 350 PE KRK+IG FIEVF+E A +K+G FL QGTLYPDVIES G S I Sbjct: 306 PEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTI 365 Query: 351 KSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGE 410 KSHHNVGGLP+ M +KL+EPLK LFKDEVR LG+ L +P++F++RHP PGPGLA+R +G+ Sbjct: 366 KSHHNVGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPGPGLAVRVLGD 425 Query: 411 ITEER-INILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRA 469 +TE ++ILR+ D I+ I AG+Y +IWQAF V LPV++VGV GD+RT+ +V +LRA Sbjct: 426 VTEGNALDILRQVDEIFINSIKDAGLYDEIWQAFAVFLPVKSVGVQGDQRTHSHVVALRA 485 Query: 470 VTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520 VTS DGMTAD+YH + FL V+ +I NEV+G+NRVVYDITSKPP+TIEWE Sbjct: 486 VTSEDGMTADWYHFEHKFLDDVSRKICNEVRGVNRVVYDITSKPPSTIEWE 536 >gnl|CDD|162088 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit. Length = 311 Score = 501 bits (1292), Expect = e-142 Identities = 198/310 (63%), Positives = 240/310 (77%), Gaps = 3/310 (0%) Query: 211 EIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIIS 270 E V I+EQVG+ +VI A+SGGVDS+VAA L + AIG LTCV VDHG +RK E E ++ Sbjct: 5 EAVEEIREQVGDAKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVK 64 Query: 271 LFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQG 330 F L VDA ERF+ LK + DPE KRK+IG++FIEVFE EAKKIG A++L QG Sbjct: 65 TFGDRLGLNLVYVDAKERFLSALKGVTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQG 124 Query: 331 TLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELRLPD 390 T+YPDVIES + G + +IKSHHNVGGLPE M +KLVEPL+ELFKDEVR LGKEL LP+ Sbjct: 125 TIYPDVIESAA---GTAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKLGKELGLPE 181 Query: 391 SFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTVLLPVQ 450 V RHP PGPGLA+R +GE+T+E++ ILR +DAI EE+ KAG+Y K+WQAF VLLPV+ Sbjct: 182 EIVWRHPFPGPGLAVRVLGEVTKEKLEILRRADAIVIEELKKAGLYDKVWQAFAVLLPVK 241 Query: 451 TVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRVVYDIT 510 +VGVMGD RTY YV +LRAV SIDGMTAD+ +FL +++ RI NEV G+NRVVYDIT Sbjct: 242 SVGVMGDGRTYGYVIALRAVESIDGMTADWARLPYDFLERISNRITNEVPGVNRVVYDIT 301 Query: 511 SKPPATIEWE 520 SKPPATIEWE Sbjct: 302 SKPPATIEWE 311 >gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated. Length = 307 Score = 419 bits (1079), Expect = e-118 Identities = 165/315 (52%), Positives = 214/315 (67%), Gaps = 12/315 (3%) Query: 206 SSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEV 265 + +E + I+E++G+ + I A+SGGVDS+VAA L + AIG LT V VD G MRK E Sbjct: 5 EKFIEEAIEEIREEIGDGKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGET 64 Query: 266 ENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQ 325 E I F N LR+VDA +RF+ LK + DPE KRK+IG+ FI VFEE AK+IG A+ Sbjct: 65 ERIKETFSDMLN--LRIVDAKDRFLDALKGVTDPEEKRKIIGETFIRVFEEVAKEIG-AE 121 Query: 326 FLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKE 385 +L QGT+ PD IES GG IKSHHNVGGLPE M +K+VEPL++L+KDEVR + + Sbjct: 122 YLVQGTIAPDWIESE---GG----IKSHHNVGGLPEGMVLKIVEPLRDLYKDEVREVARA 174 Query: 386 LRLPDSFVERHPCPGPGLAIRCIGEITEERINILRESDAIYREEIHKAGIYRKIWQAFTV 445 L LP+ ER P PGPGLA+R IGE+TEE++ I+RE++AI EE+ K G WQ F Sbjct: 175 LGLPEEISERMPFPGPGLAVRIIGEVTEEKLEIVREANAIVEEEVEKYGP--DKWQYFAA 232 Query: 446 LLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQVAIRIVNEVKGINRV 505 LL V+ GV GD R Y ++ ++RAV S DGMTAD L +++ RI +E+ + RV Sbjct: 233 LLGVKATGVKGDNRVYGWIVAVRAVESRDGMTADAPELPWEVLQRISSRITSEIPEVARV 292 Query: 506 VYDITSKPPATIEWE 520 VYDIT KPPATIE+E Sbjct: 293 VYDITPKPPATIEFE 307 >gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. Length = 188 Score = 232 bits (594), Expect = 2e-61 Identities = 89/189 (47%), Positives = 134/189 (70%), Gaps = 3/189 (1%) Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDSP 69 +L++DFGSQ+TQLIARR+RE VY E++ L+ +E+NP+ IILSG P+S ++P Sbjct: 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAENAP 60 Query: 70 QIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKG 129 + ++I E +P+LGICYG Q+M + LGG+ ++ RE+G+A +EI L +G+ Sbjct: 61 RADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKREYGKAELEILDEDDLFRGL---P 117 Query: 130 SKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLI 189 + VWMSHGD+V+ +PEGF+V+A+SD+ P A +A E++ Y VQFHPEV HT G++L+ Sbjct: 118 DESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQFHPEVTHTEYGNELL 177 Query: 190 DNFVHHVAG 198 +NFV+ V G Sbjct: 178 ENFVYDVCG 186 >gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated. Length = 184 Score = 140 bits (355), Expect = 1e-33 Identities = 61/186 (32%), Positives = 104/186 (55%), Gaps = 9/186 (4%) Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDID- 67 K++++D G Q+ LI R +R V ++I ++ K +ILSG P DI+ Sbjct: 1 KIVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKA-FEDGLILSGGP----DIER 55 Query: 68 SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWE 127 + P+ + E ++P+LGIC G Q++ ++ GG+ + E+ +EI +LKG+ Sbjct: 56 AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEYGEYALVEVEILDEDDILKGL-- 113 Query: 128 KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQ 187 + +VW SH D+V+ +P+GFE++A SD + +++ Y VQFHPEV HT G + Sbjct: 114 -PPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQFHPEVAHTEYGEE 172 Query: 188 LIDNFV 193 + NF+ Sbjct: 173 IFKNFL 178 >gnl|CDD|180190 PRK05670, PRK05670, anthranilate synthase component II; Provisional. Length = 189 Score = 73.6 bits (182), Expect = 1e-13 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 26/199 (13%) Query: 9 KVLIID-FGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILS---GSPA 61 +L+ID + S FT + + + E EV+ ++N L+ + NP AI+LS G+PA Sbjct: 1 MILLIDNYDS-FTYNLVQYLGELG--AEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPA 57 Query: 62 SSLDIDSPQIPKEILE--SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNC 119 ++ + I E +P+LG+C G Q + ++ GGK ++ G+ Sbjct: 58 -----EAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAKEIMHGKTSPIEHDGS 112 Query: 120 SLLKGMWEKGSKQQVWMSH---GDQVEHIPEGFEVIA-SSDSTPFAFIADEKRKYYAVQF 175 + G+ + V H D+ E +P+ EV A + D E Y VQF Sbjct: 113 GIFAGL---PNPFTVTRYHSLVVDR-ESLPDCLEVTAWTDDGEIMGVRHKELP-IYGVQF 167 Query: 176 HPEVVHTVGGSQLIDNFVH 194 HPE + T G +L++NF+ Sbjct: 168 HPESILTEHGHKLLENFLE 186 >gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional. Length = 720 Score = 68.4 bits (168), Expect = 5e-12 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 11/197 (5%) Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68 +VL++D F +A R++ + + A + NP ++LS P D D Sbjct: 528 RVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSDFDC 587 Query: 69 PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAF-IEIKKNCSLLKGMWE 127 L N+P+ G+C G Q + ++ GG+ G+ I ++ L G+ Sbjct: 588 KATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMHGKPSRIRVRGPGRLFSGL-- 645 Query: 128 KGSKQQVWMSHG--DQVEHIPEGFEVIASS-DSTPFAFIADEKRKYYAVQFHPEVVHTVG 184 + V H E +P+ V A + D A I + AVQFHPE + T+G Sbjct: 646 -PEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMA-IEHKTLPVAAVQFHPESIMTLG 703 Query: 185 GS---QLIDNFVHHVAG 198 G ++I+N V +AG Sbjct: 704 GDVGLRIIENVVRLLAG 720 >gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional. Length = 237 Score = 62.3 bits (152), Expect = 3e-10 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 52 QAIILSGSPASSLD-ID-SPQIP---KEILESNIPLLGICYGQQIMCQSLGGKTK-NSQS 105 +I++GS A D +D S + ++ + +PLLGICYG Q++ +LGG+ N Sbjct: 56 AGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAG 115 Query: 106 REFGRAFIEIKKNCS---LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAF 162 RE G +E+ + L G+ + ++H V +P G V+A S P Sbjct: 116 RESGTVTVELHPAAADDPLFAGLPAQFPAH---LTHLQSVLRLPPGAVVLARSAQDPHQA 172 Query: 163 IADEKRKYYAVQFHPE 178 + VQFHPE Sbjct: 173 FR-YGPHAWGVQFHPE 187 >gnl|CDD|168162 PRK05665, PRK05665, amidotransferase; Provisional. Length = 240 Score = 61.8 bits (150), Expect = 4e-10 Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 16/138 (11%) Query: 53 AIILSGSPASSLDIDSPQIPK------EILESNIPLLGICYGQQIMCQSLGGKT-KNSQS 105 A +++GS A S D P I ++ E LLG+C+G Q++ LGGK + SQ Sbjct: 60 AYLVTGSKADSFGTD-PWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQG 118 Query: 106 REFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFA--FI 163 G ++ + M ++ + +SH DQV +PEG VIASSD PFA I Sbjct: 119 WGVGIHRYQLAAHAPW---MSPAVTELTLLISHQDQVTALPEGATVIASSDFCPFAAYHI 175 Query: 164 ADEKRKYYAVQFHPEVVH 181 D+ Q HPE VH Sbjct: 176 GDQ---VLCFQGHPEFVH 190 >gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate. Length = 717 Score = 61.4 bits (149), Expect = 5e-10 Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 5/193 (2%) Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68 ++L++D F +A +R++ + +A F E+ P ++LS P D D Sbjct: 518 RILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPADFDV 577 Query: 69 PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAF-IEIKKNCSLLKGMWE 127 L +P+ G+C G Q M ++ GG G+A I + +L G+ E Sbjct: 578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHGKASRIRVLGPDALFAGLPE 637 Query: 128 KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGS- 186 + + + + S + + +P V A S I + AVQFHPE + T+ G Sbjct: 638 RLTVGR-YHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLAAVQFHPESIMTLDGGA 696 Query: 187 --QLIDNFVHHVA 197 +I N V +A Sbjct: 697 GLAMIGNVVDRLA 709 >gnl|CDD|162320 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. Length = 358 Score = 58.8 bits (143), Expect = 4e-09 Identities = 49/194 (25%), Positives = 71/194 (36%), Gaps = 55/194 (28%) Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAF--KNALDYFKEQNPQAIILSGSPASSLDI 66 +V++IDFG + I RR+ K CEV + K+ NP I LS P Sbjct: 175 RVVVIDFGVKQN--ILRRL--VKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPG----- 225 Query: 67 DSPQIPKEI-----LESNIPLLGICYGQQIMCQSLGGKT---------KN--SQSREFGR 110 D + I L IP+ GIC G Q++ + G KT N + GR Sbjct: 226 DPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKMKFGHRGGNHPVKDLITGR 285 Query: 111 AFIEIK------KNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIA 164 I + SL G E ++H + + EG I Sbjct: 286 VEITSQNHGYAVDPDSLPAGDLE--------VTHVNLNDGTVEG--------------IR 323 Query: 165 DEKRKYYAVQFHPE 178 + ++VQ+HPE Sbjct: 324 HKDLPVFSVQYHPE 337 >gnl|CDD|161933 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase. Length = 188 Score = 56.7 bits (137), Expect = 2e-08 Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 21/196 (10%) Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQN---PQAIILSGSPASSLDI 66 VL+ID FT + + E EV+ +N +E P I++S P + Sbjct: 2 VLMIDNYDSFTYNLVQYFCELGA--EVVVKRNDSLTLQEIEALLPLLIVISPGPCTP--- 56 Query: 67 DSPQIPKEILE---SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKN-CSLL 122 + I E + +P+LG+C G Q M Q+ GG + + G+ EI+ N + Sbjct: 57 NEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRANTVMHGKTS-EIEHNGAGIF 115 Query: 123 KGMWEKGSKQQVWMSHGDQV--EHIPEGFEVIASSDSTPFAFIADEKRK--YYAVQFHPE 178 +G++ + H V E +P F V A + +A R VQFHPE Sbjct: 116 RGLF---NPLTATRYHSLVVEPETLPTCFPVTAWEE-ENIEIMAIRHRDLPLEGVQFHPE 171 Query: 179 VVHTVGGSQLIDNFVH 194 + + G QL+ NF+H Sbjct: 172 SILSEQGHQLLANFLH 187 >gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional. Length = 187 Score = 55.3 bits (133), Expect = 4e-08 Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 11/150 (7%) Query: 50 NPQAIILSGSPASSLDIDSPQIPKEILE---SNIPLLGICYGQQIMCQSLGGKTKNSQSR 106 PQ I++S P + D I +++ +P+LG+C G Q M Q+ GGK + Sbjct: 43 KPQKIVISPGPCTP---DEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKV 99 Query: 107 EFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVE--HIPEGFEVIASSDSTPFAFIA 164 G+ + +G+ + V H VE +P FEV A S++ I Sbjct: 100 MHGKTSPITHNGEGVFRGL---ANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIR 156 Query: 165 DEKRKYYAVQFHPEVVHTVGGSQLIDNFVH 194 + VQFHPE + + G QL+ NF+H Sbjct: 157 HRQWDLEGVQFHPESILSEQGHQLLANFLH 186 >gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional. Length = 534 Score = 54.7 bits (132), Expect = 5e-08 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 29/201 (14%) Query: 9 KVLIIDFGSQFT----QLIARR-------VRESKVYCEVIAFKNALDYFKEQNPQAIILS 57 +++ID FT Q I VR ++ E I + NP I++S Sbjct: 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI---------EALNPSHIVIS 51 Query: 58 GSPASSLDID-SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIK 116 P + S ++ + +P+LG+C G Q + + GGK +++ G+ I Sbjct: 52 PGPGRPEEAGISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKRILHGKT-SPID 109 Query: 117 KNCSLLKGMWEK-GSKQQVWMSHGDQVEH--IPEGFEVIASSDSTPFAFIADEKRKYYAV 173 N KG++ + H VE +PE EV A SD I ++ + V Sbjct: 110 HNG---KGLFRGIPNPTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIFGV 166 Query: 174 QFHPEVVHTVGGSQLIDNFVH 194 QFHPE + T G +++ NF++ Sbjct: 167 QFHPESILTEEGKRILKNFLN 187 >gnl|CDD|183868 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 205 Score = 54.4 bits (132), Expect = 8e-08 Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 45/150 (30%) Query: 73 KEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFG------------RAF-------- 112 KE + S PLLGIC G Q++ +S S EFG R F Sbjct: 66 KEAVASGKPLLGICLGMQLLFES---------SEEFGETEGLGLLPGRVRRFPPEEGLKV 116 Query: 113 -------IEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFI 163 +E+KK LLKG+ G+ V+ H + E V A++D F A + Sbjct: 117 PHMGWNQLELKKESPLLKGI-PDGA--YVYFVHSYYADPCDEE-YVAATTDYGVEFPAAV 172 Query: 164 ADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 K + QFHPE V G +++ NFV Sbjct: 173 --GKDNVFGAQFHPEKSGDV-GLKILKNFV 199 >gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional. Length = 193 Score = 53.3 bits (128), Expect = 1e-07 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Query: 50 NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFG 109 NP +++S P + + E +P+LG+C G Q + Q GG+ ++ G Sbjct: 43 NPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRARQVMHG 102 Query: 110 RAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEH--IPEGFEVIASSDSTPFAFIADEK 167 + S+ KG+ + V H V++ +PE FE+ A ++ + DE Sbjct: 103 KTSPIRHTGRSVFKGL---NNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSM--DEI 157 Query: 168 RKYY-------AVQFHPEVVHTVGGSQLIDNFV 193 + AVQFHPE + T G QL+ NF+ Sbjct: 158 MGFQHKTLPIEAVQFHPESIKTEQGHQLLANFL 190 >gnl|CDD|180590 PRK06490, PRK06490, glutamine amidotransferase; Provisional. Length = 239 Score = 51.9 bits (125), Expect = 4e-07 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 39/148 (26%) Query: 53 AIILSGSPASSLDIDSPQIPKEI------LESNIPLLGICYGQQIMCQSLGGKTKNSQSR 106 A+I G P S+ D D I +EI L+ N P LGIC G Q++ + LG + Sbjct: 56 AVIFGG-PMSANDPD-DFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARV---APH 110 Query: 107 EFGRAFIEIKKNCSLLKGMW-----EKGSKQQVWMSHGDQVEH-------IPEGFEVIAS 154 GR EI G + E G W V H +P G E++A+ Sbjct: 111 PDGRV--EI--------GYYPLRPTEAGRALMHWPEM---VYHWHREGFDLPAGAELLAT 157 Query: 155 SDSTPF-AFIADEKRKYYAVQFHPEVVH 181 D P AF + + +QFHPEV Sbjct: 158 GDDFPNQAFRYGDNA--WGLQFHPEVTR 183 >gnl|CDD|180812 PRK07053, PRK07053, glutamine amidotransferase; Provisional. Length = 234 Score = 51.1 bits (123), Expect = 6e-07 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 21/138 (15%) Query: 54 IILSGSPASSLDIDS-PQIPKEI------LESNIPLLGICYGQQIMCQSLGGKTKNSQSR 106 ++L G P D + P + EI L + +P LGIC G Q++ ++LG + + Sbjct: 52 VVL-GGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQK 110 Query: 107 EFGRAFIEI--KKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTP---FA 161 E G A + + S L+ + G+ V HGD + +PEG ++AS+ + FA Sbjct: 111 EIGWAPLTLTDAGRASPLRHL---GAGTPVLHWHGDTFD-LPEGATLLASTPACRHQAFA 166 Query: 162 FIADEKRKYYAVQFHPEV 179 + A+QFHPE Sbjct: 167 W----GNHVLALQFHPEA 180 >gnl|CDD|183597 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed. Length = 360 Score = 50.1 bits (121), Expect = 1e-06 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 11/98 (11%) Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILS---GSPASSLD 65 KV+ IDFG + I R + E V+ + NP + LS G PA Sbjct: 179 KVVAIDFGVKRN--ILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPA---A 233 Query: 66 IDS--PQIPKEILESNIPLLGICYGQQIMCQSLGGKTK 101 +D I +E+LE IP+ GIC G Q++ +LG KT Sbjct: 234 LDYAIEMI-RELLEKKIPIFGICLGHQLLALALGAKTY 270 >gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed. Length = 354 Score = 48.3 bits (116), Expect = 4e-06 Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 49/191 (25%) Query: 9 KVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDIDS 68 V +IDFG + + I R + + V+ + +L+ K NP I+LS P ++ Sbjct: 169 HVALIDFG--YKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKEL-Q 225 Query: 69 PQIPK-EILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKG--- 124 P +P+ + L S+ P+LGIC G Q++ +LG T+ FG +G Sbjct: 226 PYLPEIKKLISSYPILGICLGHQLIALALGADTEKLP---FGH------------RGANH 270 Query: 125 -MWEKGSKQQVWMS---HGDQVEHIPEGFEVIASS-DSTPF--AF--IADE--------K 167 + + + +VWM+ H G+ V S D TP F + D K Sbjct: 271 PVIDL-TTGRVWMTSQNH---------GYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKK 320 Query: 168 RKYYAVQFHPE 178 + +VQFHPE Sbjct: 321 KPVLSVQFHPE 331 >gnl|CDD|163334 TIGR03573, WbuX, N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an invariable contextual association with homologs of the HisH and HisF proteins known as WbuY and WbuZ, respectively. These two proteins are believed to supply the enzyme with ammonium by hydrolysis of glutamine and delivery through an ammonium conduit. Length = 343 Score = 48.1 bits (115), Expect = 5e-06 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 210 KEIVSRIKEQVGNER--VICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVEN 267 +E+V +IK++ G R I VSGG DST A ++ + +G+N V VD G+ + V+N Sbjct: 46 EELVDKIKKK-GGGRYDCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKN 104 Query: 268 IISLFK 273 + +L K Sbjct: 105 LNNLIK 110 >gnl|CDD|183878 PRK13181, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 199 Score = 46.0 bits (110), Expect = 3e-05 Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 23/137 (16%) Query: 73 KEILESNIPLLGICYGQQIMCQS--------LG---GKTKNSQSREF-----GRAFIEIK 116 KE +E P+LGIC G Q++ +S LG G K +S G ++ Sbjct: 66 KEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPL 125 Query: 117 KNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPFAFIADEKRKYYAVQF 175 K L KG+ E + H V +V+A+++ PF A K YAVQF Sbjct: 126 KESPLFKGIEEGS---YFYFVHSYYVPCEDPE-DVLATTEYGVPFC-SAVAKDNIYAVQF 180 Query: 176 HPEVVHTVGGSQLIDNF 192 HPE G +L+ NF Sbjct: 181 HPEKSGKA-GLKLLKNF 196 >gnl|CDD|172505 PRK14004, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 210 Score = 45.3 bits (107), Expect = 3e-05 Identities = 53/185 (28%), Positives = 77/185 (41%), Gaps = 37/185 (20%) Query: 44 DYFKEQNPQAIILSGS---PASSLDIDSPQIPKEI---LESNIPLLGICYGQQIMCQS-- 95 D +N +A+IL G + +++S + I +ES PL GIC G QI+ +S Sbjct: 31 DPETIENSKALILPGDGHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 Query: 96 -------------LG---GKTKNSQSREF-------GRAFIEIKKNCSLLKGMWEKGSKQ 132 LG GK K + ++F R I K LLKG+ G + Sbjct: 91 ETNQGTKKEQIEGLGYIKGKIKKFEGKDFKVPHIGWNRLQIRRKDKSKLLKGI---GDQS 147 Query: 133 QVWMSHGDQVEHIPEGFEVIASSDSTPFAFIAD-EKRKYYAVQFHPEVVHTVGGSQLIDN 191 + H + EG + D F A EK + QFHPE HT G +L++N Sbjct: 148 FFYFIHSYRPTGA-EGNAITGLCDYYQEKFPAVVEKENIFGTQFHPEKSHTH-GLKLLEN 205 Query: 192 FVHHV 196 F+ V Sbjct: 206 FIEFV 210 >gnl|CDD|183877 PRK13170, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 196 Score = 45.2 bits (108), Expect = 4e-05 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 28/132 (21%) Query: 81 PLLGICYGQQIM---------CQSLG---GKTKNSQSREF-----GRAFIEIKKNCSLLK 123 P+LGIC G Q++ LG G K G + + L + Sbjct: 72 PVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLPHMGWNQVTPQAGHPLFQ 131 Query: 124 GMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFIADEKRKYYAVQFHPEVVH 181 G+ E GS + H + P IA + PF A I K ++ VQFHPE Sbjct: 132 GI-EDGS--YFYFVHSYAM---PVNEYTIAQCNYGEPFSAAIQ--KDNFFGVQFHPERSG 183 Query: 182 TVGGSQLIDNFV 193 G+QL+ NF+ Sbjct: 184 AA-GAQLLKNFL 194 >gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 209 Score = 45.2 bits (108), Expect = 4e-05 Identities = 34/145 (23%), Positives = 49/145 (33%), Gaps = 48/145 (33%) Query: 81 PLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKG----MWEKGSKQ---- 132 P LGIC G Q++ + E G L+ G G Sbjct: 79 PFLGICVGMQLLF---------ERGLEHGDT-----PGLGLIPGEVVRFQPDGPALKVPH 124 Query: 133 ----QVWMSHGDQVEH-IPEG----F------------EVIASSD-STPF-AFIADEKRK 169 V + + IP+G F +V+A +D PF A +A + Sbjct: 125 MGWNTVDQTRDHPLFAGIPDGARFYFVHSYYAQPANPADVVAWTDYGGPFTAAVARDNL- 183 Query: 170 YYAVQFHPEVVHTVGGSQLIDNFVH 194 +A QFHPE G L+ NF+ Sbjct: 184 -FATQFHPEKSQDA-GLALLRNFLA 206 >gnl|CDD|116336 pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219 Score = 44.9 bits (107), Expect = 5e-05 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 73 KEILESNIPLLGICYGQQIMCQSLGG--------------KTKNSQSREFGRAFIEIKKN 118 + LE P+LGIC G Q++ +LGG + + ++ Sbjct: 100 RAALERGKPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPG 159 Query: 119 CSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA-SSDSTPFAF-IADEKRKYYAVQFH 176 SLL + V H ++ + G V A + D T A + VQ+H Sbjct: 160 -SLLARLLGAEEI-LVNSLHHQAIKRLAPGLRVEATAPDGTIEAIESPNAPYFVLGVQWH 217 Query: 177 PE 178 PE Sbjct: 218 PE 219 >gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase. Length = 222 Score = 44.4 bits (105), Expect = 7e-05 Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 66/227 (29%) Query: 3 KRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILSGS 59 +++ +++ID FT + + + E + C ++N ++ K +NP+ +++S Sbjct: 14 SSKQNGPIIVIDNYDSFTYNLCQYMGE--LGCHFEVYRNDELTVEELKRKNPRGVLISPG 71 Query: 60 PASSLDID-SPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKN 118 P + D S Q E L +PL G+C G Q + ++ GGK ++ Sbjct: 72 PGTPQDSGISLQTVLE-LGPLVPLFGVCMGLQCIGEAFGGKI--------------VRSP 116 Query: 119 CSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPF-------------AFIAD 165 ++ G K S V + +G E + S PF F +D Sbjct: 117 FGVMHG---KSSP----------VHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSD 163 Query: 166 E----------------KRKY---YAVQFHPEVVHTVGGSQLIDNFV 193 E RKY VQFHPE + T G ++ NF+ Sbjct: 164 ELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFI 210 >gnl|CDD|168720 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional. Length = 190 Score = 44.3 bits (105), Expect = 8e-05 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 15/196 (7%) Query: 7 SSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLDI 66 ++K+LII+ FT + +R+ V +V+ ++ LD + +N I++S P Sbjct: 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVED-LDLDEVENFSHILISPGP------ 53 Query: 67 DSPQIPKEILE------SNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRA-FIEIKKNC 119 D P+ ++ + +LG+C G Q +C+ GG+ N + G+ ++++ N Sbjct: 54 DVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLNNVRHGQQRPLKVRSNS 113 Query: 120 SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEV 179 L G+ E+ ++ S E+ P E+ A D + + Y VQFHPE Sbjct: 114 PLFDGLPEE-FNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIYGVQFHPES 172 Query: 180 VHTVGGSQLIDNFVHH 195 + G Q++ N++ Sbjct: 173 YISEFGEQILRNWLAI 188 >gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional. Length = 265 Score = 44.0 bits (105), Expect = 9e-05 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 3/39 (7%) Query: 212 IVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIG 247 IV I+E+V G + V+ +SGG+DS V A+L +A+G Sbjct: 17 IVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALG 55 Score = 31.7 bits (73), Expect = 0.41 Identities = 10/33 (30%), Positives = 20/33 (60%) Query: 368 VEPLKELFKDEVRLLGKELRLPDSFVERHPCPG 400 + P+ +L+K +VR L + L +P+ +E+ P Sbjct: 159 LNPIGDLYKTQVRELARHLGVPEDIIEKPPSAD 191 >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional. Length = 531 Score = 43.5 bits (102), Expect = 1e-04 Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 10/188 (5%) Query: 8 SKVLIIDFGSQFTQLIARRVRESK----VYCEVIAFKNALDYFKEQNPQAIILSGSPASS 63 + +L++D FT +A ++R + +Y I + ++ + ++LS P Sbjct: 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVP 61 Query: 64 LDIDS-PQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLL 122 + P++ L +P++GIC G Q + ++ GG + G+A ++ Sbjct: 62 SEAGCMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMF 120 Query: 123 KGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHT 182 G+ + V H +IP G + A + A + + + QFHPE + T Sbjct: 121 AGL---TNPLPVARYHSLVGSNIPAGLTINAHFNGMVMA-VRHDADRVCGFQFHPESILT 176 Query: 183 VGGSQLID 190 G++L++ Sbjct: 177 TQGARLLE 184 >gnl|CDD|178898 PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed. Length = 346 Score = 43.1 bits (103), Expect = 2e-04 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%) Query: 224 RVICAVSGGVDSTVAAFLI----YEAIGINL 250 RV+ +SGGVDS+VAA L+ YE IG+ + Sbjct: 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFM 32 >gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing). Length = 415 Score = 42.7 bits (100), Expect = 2e-04 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 20/104 (19%) Query: 6 RSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKN---ALDYFKEQNPQAIILSGSPAS 62 S V+ DFG I RR+ + C++ + A + K P ++ S P Sbjct: 239 ESYHVIAYDFG--IKHNILRRL--ASYGCKITVVPSTWPASEALK-MKPDGVLFSNGPG- 292 Query: 63 SLDIDSPQIP------KEILESNIPLLGICYGQQIMCQSLGGKT 100 D +P KE+L +P+ GIC G Q++ Q+LGGKT Sbjct: 293 ----DPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKT 331 >gnl|CDD|181035 PRK07567, PRK07567, glutamine amidotransferase; Provisional. Length = 242 Score = 42.2 bits (100), Expect = 3e-04 Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 28/146 (19%) Query: 53 AIILSGSPASSLDIDSPQIPK----------------EILESNIPLLGICYGQQIMCQSL 96 +I+ GSP ++ P K E++ + P LG CYG + Sbjct: 54 GVIVGGSP---FNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQ 110 Query: 97 GGKTKNSQSREFGRAFIEIKKNCS---LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA 153 GG + G + + LL G+ ++ H + V +P G ++A Sbjct: 111 GGVVDRTYGEPVGAVTVSLTDAGRADPLLAGL---PDTFTAFVGHKEAVSALPPGAVLLA 167 Query: 154 SSDSTPF-AFIADEKRKYYAVQFHPE 178 +S + P F YA QFHPE Sbjct: 168 TSPTCPVQMFRV--GENVYATQFHPE 191 >gnl|CDD|162563 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. Length = 196 Score = 42.3 bits (100), Expect = 3e-04 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 23/139 (16%) Query: 71 IPKEILESNIPLLGICYGQQIM---------CQSLG---GKTKNSQSR---EFGRAFIEI 115 + ++ P+LGIC G Q++ LG G ++R G + Sbjct: 63 FVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPHMGWNEVHP 122 Query: 116 KKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPFAFIADEKRKYYAVQ 174 K LL G+ E + H E V+A +D F +K + Q Sbjct: 123 VKESPLLNGIDEGAY---FYFVHSYYAV--CEEEAVLAYADYGEKFPAAV-QKGNIFGTQ 176 Query: 175 FHPEVVHTVGGSQLIDNFV 193 FHPE G +L++NF+ Sbjct: 177 FHPEKSGKT-GLKLLENFL 194 >gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 201 Score = 41.7 bits (98), Expect = 4e-04 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 24/139 (17%) Query: 73 KEILESNIPLLGICYGQQIM---------CQSLG---------GKTKNSQSREFGRAFIE 114 +++L P+LGIC G Q+ C+ LG + N + G +E Sbjct: 67 EQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELE 126 Query: 115 IKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQ 174 I K L +G+ E K + H V+ E V A + + +K +A Q Sbjct: 127 ILKQSPLYQGIPE---KSDFYFVHSFYVKCKDE--FVSAKAQYGHKFVASLQKDNIFATQ 181 Query: 175 FHPEVVHTVGGSQLIDNFV 193 FHPE + G +L++NF Sbjct: 182 FHPEKSQNL-GLKLLENFA 199 >gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated. Length = 195 Score = 41.3 bits (97), Expect = 7e-04 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 7/150 (4%) Query: 47 KEQNPQAIILSGSPASSLDIDSPQIPKEILE---SNIPLLGICYGQQIMCQSLGGKTKNS 103 + P +++S P S + I E++ IP+ G+C G Q + Q GG+ + Sbjct: 40 ENMKPDFLMISPGPCSP---NEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRA 96 Query: 104 QSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFI 163 + G+ + ++ + + + + S + E +P+ EV + ++ I Sbjct: 97 ERLMHGKTSLMHHDGKTIFSDIPNPFTATR-YHSLIVKKETLPDCLEVTSWTEEGEIMAI 155 Query: 164 ADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 + VQFHPE + T G +L+ NF+ Sbjct: 156 RHKTLPIEGVQFHPESIMTSHGKELLQNFI 185 >gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional. Length = 191 Score = 41.0 bits (96), Expect = 8e-04 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%) Query: 80 IPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG 139 +P+LG+C G Q + Q+ G + ++ G+ + +G+ + + + + S Sbjct: 73 LPILGVCLGHQALGQAFGARVVRARQVMHGKTSAICHSGQGVFRGLNQPLTVTR-YHSLV 131 Query: 140 DQVEHIPEGFEVIASSDST----PFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFV 193 + +P FE+ A S+ I VQFHPE + + G QL+DNF+ Sbjct: 132 IAADSLPGCFELTAWSERGGEMDEIMGIRHRTLPLEGVQFHPESILSEQGHQLLDNFL 189 >gnl|CDD|178226 PLN02617, PLN02617, imidazole glycerol phosphate synthase hisHF. Length = 538 Score = 38.5 bits (90), Expect = 0.004 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 24/141 (17%) Query: 73 KEILESNIPLLGICYGQQIM---------CQSLG---GKTKNSQSRE------FGRAFIE 114 +E ++++ P LGIC G Q++ + LG G S G ++ Sbjct: 73 REYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLRVPHIGWNALQ 132 Query: 115 IKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKR-KYYAV 173 I K+ LL G+ + V+ H + E + + ++ + FIA ++ +AV Sbjct: 133 ITKDSELLDGV----GGRHVYFVHSYRATPSDENKDWVLATCNYGGEFIASVRKGNVHAV 188 Query: 174 QFHPEVVHTVGGSQLIDNFVH 194 QFHPE G S ++ F+ Sbjct: 189 QFHPEKSGATGLS-ILRRFLE 208 >gnl|CDD|161871 TIGR00420, trmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. Length = 352 Score = 38.1 bits (89), Expect = 0.005 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 4/33 (12%) Query: 224 RVICAVSGGVDSTVAAFLI----YEAIGINLTC 252 +VI +SGGVDS+V+A+L+ YE +G+ + Sbjct: 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKN 34 >gnl|CDD|129369 TIGR00268, TIGR00268, conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server. Length = 252 Score = 37.5 bits (87), Expect = 0.008 Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 42/215 (19%) Query: 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRV 282 ++V+ A SGGVDS++ A + +A G + + V + E+E+ I + K Sbjct: 13 KKVLIAYSGGVDSSLLAAVCSDA-GTEVLAITVVSPSISPRELEDAIIIAKEI-GVNHEF 70 Query: 283 VDASERFIRKLKNIVDPETKRKV------IGQLFIEVFEEEAKKIGGAQFLGQGTLYPDV 336 V + + + V ++ + + +EA+K G Y V Sbjct: 71 VKI---------DKMINPFRANVEERCYFCKKMVLSILVKEAEKRG----------YDVV 111 Query: 337 IESISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKEL--FKDEVRLLGKELRLPDSFVE 394 ++ G + + H G + V P E K E+R + K L + Sbjct: 112 VD-----GTNADDLFDHRP--GYRAVKEFNGVSPWAEFGITKKEIREIAKSLGISFPDKP 164 Query: 395 RHPCPGPGLAIRCIG--EITEERINILRESDAIYR 427 C LA R EI EE++ ++ E++ + R Sbjct: 165 SEAC----LASRFPFGREIDEEKLKMVDEAEEVLR 195 >gnl|CDD|162854 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). Length = 189 Score = 37.2 bits (87), Expect = 0.011 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Query: 224 RVICAVSGGVDSTVAAFLIYEA---IGINLTCVLVDHG 258 R++ AVSGGVDS L+ + + I L VDHG Sbjct: 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHG 38 >gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional. Length = 214 Score = 36.6 bits (85), Expect = 0.015 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 1/112 (0%) Query: 80 IPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHG 139 PLLG+C G Q + + G + G+ +L G+ + + + + S Sbjct: 77 TPLLGVCLGHQAIGVAFGATVDRAPELLHGKTSSVHHTGVGVLAGLPDPFTATR-YHSLT 135 Query: 140 DQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVVHTVGGSQLIDN 191 E +P EV A +DS + + + VQFHPE V T GG +++ N Sbjct: 136 ILPETLPAELEVTARTDSGVIMAVRHRELPIHGVQFHPESVLTEGGHRMLAN 187 >gnl|CDD|178477 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase. Length = 918 Score = 36.0 bits (83), Expect = 0.022 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 163 IADEKRKYYAVQFHPEVVHTVGGSQLIDNF 192 I R +Y +QFHPE + T G Q+ NF Sbjct: 302 IMHSTRPHYGLQFHPESIATCYGRQIFKNF 331 >gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional. Length = 235 Score = 35.3 bits (82), Expect = 0.038 Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 33/145 (22%) Query: 54 IILSG--SPASSLD----IDSP---QIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQ 104 I++ G SP ++ + DS ++ + +++ ++G+C G Q++ ++LG K ++S Sbjct: 50 IVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP 109 Query: 105 SREFGRAFIEI----KKNC-------SLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIA 153 +E G I + K+ +L G W H D + +V+A Sbjct: 110 EKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHW-----------HNDMPGLTDQA-KVLA 157 Query: 154 SSDSTPFAFIADEKRKYYAVQFHPE 178 +S+ P + Y Q H E Sbjct: 158 TSEGCPRQIVQYSN-LVYGFQCHME 181 >gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1307 Score = 35.1 bits (81), Expect = 0.049 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 25/106 (23%) Query: 83 LGICYGQQIMC-----------QSLGGKTKNSQSR----EFGR-----AFIEIKKNCS-L 121 LG+C G Q+M LG SQ R E GR + I+ + + + Sbjct: 1130 LGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIM 1189 Query: 122 LKGMWEKGSKQQVWMSHGDQVEHIPEG--FEVIASSDSTPFAFIAD 165 LKGM +GS VW +HG+ + P+ + + S+ P + D Sbjct: 1190 LKGM--EGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDD 1233 >gnl|CDD|179150 PRK00876, nadE, NAD synthetase; Reviewed. Length = 326 Score = 34.2 bits (79), Expect = 0.093 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%) Query: 210 KEIVSRIKEQVGNE----RVICAVSGGVDSTVAAFLIYEAIG 247 + I + I+EQV V+ +SGG+DS+V A L A+G Sbjct: 17 ERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALG 58 >gnl|CDD|130796 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit. Length = 1310 Score = 33.6 bits (77), Expect = 0.14 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 15/97 (15%) Query: 83 LGICYGQQIMCQSLG--GKTK--------NSQSREFGRAFIEIKKNCSL-LKGMWEKGSK 131 LG+C G Q++ L T+ NS+ E A + + ++ S+ L+GM GS+ Sbjct: 1148 LGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGM--AGSR 1205 Query: 132 QQVWMSHGD-QVE-HIPEGFEVIASSDSTPFAFIADE 166 V ++HG+ PE +S +I D+ Sbjct: 1206 LPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDD 1242 >gnl|CDD|183869 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 200 Score = 33.3 bits (77), Expect = 0.15 Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 26/138 (18%) Query: 74 EILESNIPLLGICYGQQIMCQSL--GGKTK-----NSQSREF---------GRAFIEIKK 117 E S P LGIC G Q++ +S GG + + F G +++ K Sbjct: 66 EAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVK 125 Query: 118 NCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSD-STPF-AFIADEKRKYYAVQF 175 +C L +G+ + V+ H E + V+A++D F A + ++ + QF Sbjct: 126 DCPLFEGI----DGEYVYFVHSYYAYPDDEDY-VVATTDYGIEFPAAVCND--NVFGTQF 178 Query: 176 HPEVVHTVGGSQLIDNFV 193 HPE G ++++NFV Sbjct: 179 HPE-KSGETGLKILENFV 195 >gnl|CDD|180047 PRK05380, pyrG, CTP synthetase; Validated. Length = 533 Score = 33.5 bits (78), Expect = 0.15 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 77 ESNIPLLGICYGQQIMC 93 E+NIP LGIC G Q+ Sbjct: 370 ENNIPFLGICLGMQLAV 386 >gnl|CDD|162548 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742 Score = 33.0 bits (75), Expect = 0.18 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 7/147 (4%) Query: 52 QAIILSGSPASSLDIDSPQIPKEILESN----IPLLGICYGQQIMCQSLGGKTKNSQSRE 107 AI++ P + + I E+ E +P+LGIC G Q +C + G + + Sbjct: 55 DAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPK 114 Query: 108 FGRAFIEIKKNCSLLKGMWE-KGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADE 166 G+ + + ++ G++ K ++ ++ + ++ + + + Sbjct: 115 HGQVYEMHTNDAAIFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMS-AQTK 173 Query: 167 KRKYYAVQFHPEVVHTVGGS-QLIDNF 192 K+ ++ VQ+HPE + GS +L+ NF Sbjct: 174 KKPWFGVQYHPESCCSELGSGKLVSNF 200 >gnl|CDD|173128 PRK14665, mnmA, tRNA-specific 2-thiouridylase MnmA; Provisional. Length = 360 Score = 33.0 bits (75), Expect = 0.20 Identities = 14/24 (58%), Positives = 19/24 (79%) Query: 222 NERVICAVSGGVDSTVAAFLIYEA 245 N+RV+ +SGG DS+VAA L+ EA Sbjct: 5 NKRVLLGMSGGTDSSVAAMLLLEA 28 >gnl|CDD|161924 TIGR00552, nadE, NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity. Length = 250 Score = 32.4 bits (74), Expect = 0.28 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 30/203 (14%) Query: 205 MSSYHKEIVSRIKEQV---GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHG-FM 260 + Y +EI ++ V G + V+ +SGG+DS V A L EA+G +L+ H Sbjct: 2 LIKYVEEIEDFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQT 61 Query: 261 RKNEVENIISLFKG----YPNFPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEE 316 + +V++ ++L + Y N + + AS + + + +L + + Sbjct: 62 PEQDVQDALALAEPLGINYKNIDIAPIAASF------------QAQTETGDELSDFLAKG 109 Query: 317 EAK-KIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLPEHMDMKL-VEPLKEL 374 K ++ A LY + G + KS +G ++ D + P+ +L Sbjct: 110 NLKARLRMA------ALYAIANKHNLLVLGTGN--KSELMLGYFTKYGDGGCDIAPIGDL 161 Query: 375 FKDEVRLLGKELRLPDSFVERHP 397 FK +V L K L +P+ +E+ P Sbjct: 162 FKTQVYELAKRLNVPERIIEKPP 184 >gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional. Length = 208 Score = 32.5 bits (74), Expect = 0.30 Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 27/168 (16%) Query: 50 NPQAIILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTK-------- 101 NP I LS P D + + IPLLGIC G Q + + GGK + Sbjct: 44 NPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCGPVHGT 103 Query: 102 ---------NSQSREFGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVI 152 QS F +++ + + G K + H P+G E + Sbjct: 104 TDNMILTDAGVQSPVFAGLATDVEPDHPEI-----PGRKVPIARYHSLGCVVAPDGMESL 158 Query: 153 ASSDST--PFAFIADEKRKYYAV--QFHPEVVHTVGGSQLIDNFVHHV 196 + S P +A E A+ QFHPE V + G ++ V + Sbjct: 159 GTCSSEIGPVI-MAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQL 205 >gnl|CDD|161829 TIGR00342, TIGR00342, thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis. Length = 371 Score = 31.6 bits (72), Expect = 0.52 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 223 ERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENII-----SLFKGYPN 277 +V+ +SGG+DS VAAF++ + G + V + + + SL + + Sbjct: 173 GKVLALLSGGIDSPVAAFMMMKR-GCRVVAVHFFNEPAASEKAREKVERLANSLNETGGS 231 Query: 278 FPLRVVDASERFIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGG 323 L V D ++ +I+ + ++ + + A+K G Sbjct: 232 VKLYVFDF-TDVQEEIIHIIPEGYTCVLCRRMMYKAASKVAEKEGC 276 >gnl|CDD|161825 TIGR00337, PyrG, CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). Length = 525 Score = 31.5 bits (72), Expect = 0.60 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%) Query: 77 ESNIPLLGICYGQQIM----CQSLGGKTKNSQSREF 108 E+NIP LGIC G Q+ +++ G K + S EF Sbjct: 370 ENNIPFLGICLGMQLAVIEFARNVLGL-KGANSTEF 404 >gnl|CDD|177961 PLN02327, PLN02327, CTP synthase. Length = 557 Score = 31.1 bits (71), Expect = 0.66 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%) Query: 77 ESNIPLLGICYGQQIM----CQSLGGKTKNSQSREF 108 E+ +P LGIC G QI +S+ G K++ S EF Sbjct: 389 ENKVPYLGICLGMQIAVIEFARSVLG-LKDANSTEF 423 >gnl|CDD|169417 PRK08384, PRK08384, thiamine biosynthesis protein ThiI; Provisional. Length = 381 Score = 31.1 bits (70), Expect = 0.72 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 28/188 (14%) Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGY---PNFPL 280 +V+ +SGG+DS VAAFL+ + G+ + V + G +V I + K Y L Sbjct: 182 KVVALLSGGIDSPVAAFLMMKR-GVEVIPVHIYMGEKTLEKVRKIWNQLKKYHYGGKAEL 240 Query: 281 RVVDASER--FIRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIE 338 VV ER I+KLK + + ++ + AK+ G +G + D + Sbjct: 241 IVVKPQERERIIQKLKELKKENYTCVFCKFMMVKHADRIAKEFG-----AKGIVMGDSLG 295 Query: 339 SISFFGGPSSIIKSHHNVGGLPEHMDMKLVEPLKELFKDEVRLLGKELR------LPDS- 391 ++ ++ N+ + + D+ + PL + K+E+ + K + LP+ Sbjct: 296 QVA--------SQTLENMYIVSQASDLPIYRPLIGMDKEEIVAIAKTIGTFELSTLPEDE 347 Query: 392 --FVERHP 397 F+ +HP Sbjct: 348 IPFIPKHP 355 >gnl|CDD|181103 PRK07757, PRK07757, acetyltransferase; Provisional. Length = 152 Score = 30.9 bits (71), Expect = 0.77 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Query: 290 IRKLKNIVDPETKRKVIGQLFIEVFEEEAKKIG 322 IR L V + + + IG++ +E EEA+++G Sbjct: 68 IRSL--AVSEDYRGQGIGRMLVEACLEEARELG 98 >gnl|CDD|169396 PRK08349, PRK08349, hypothetical protein; Validated. Length = 198 Score = 30.1 bits (68), Expect = 1.5 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLR-- 281 + + +S G+DS VA +L+ G+ + V ++ +V ++ + L+ Sbjct: 2 KAVALLSSGIDSPVAIYLMLRR-GVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDP 60 Query: 282 -VVDASE 287 VVDA E Sbjct: 61 VVVDAFE 67 >gnl|CDD|184330 PRK13794, PRK13794, hypothetical protein; Provisional. Length = 479 Score = 30.0 bits (68), Expect = 1.6 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 204 VMSSYHKEIVSRIKEQVG--NERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMR 261 V+ Y + + I+ N+ V A SGG DS L +A+GIN + D G Sbjct: 227 VLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEF 286 Query: 262 KNEVENI 268 +EN+ Sbjct: 287 PETLENV 293 >gnl|CDD|181483 PRK08576, PRK08576, hypothetical protein; Provisional. Length = 438 Score = 29.7 bits (67), Expect = 1.7 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 211 EIVSRIKEQVGNERVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGF 259 + + + VI SGG DST A L +A G ++T V VD G+ Sbjct: 223 KASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFG-DVTAVYVDTGY 270 >gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated. Length = 476 Score = 30.0 bits (68), Expect = 1.7 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Query: 54 IILSGSPASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQ 94 II GS S + + ++ KEIL + ++GIC G QI+ + Sbjct: 41 IIPGGSLVESGSL-TDELKKEILNFDGYIIGICSGFQILSE 80 >gnl|CDD|163411 TIGR03699, mena_SCO4550, menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. Length = 340 Score = 29.9 bits (68), Expect = 1.7 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 316 EEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHH 354 EE GG Q L QG + PD+ + ++ IK+ Sbjct: 82 EELVAYGGTQILLQGGVNPDL--GLDYYEDLFRAIKARF 118 >gnl|CDD|129588 TIGR00497, hsdM, type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). Length = 501 Score = 29.5 bits (66), Expect = 1.9 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 231 GGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFI 290 G + T+ +L+ + ++ L + F + +I+ L K P+ +D S F+ Sbjct: 363 EGKEQTIRKYLVDQNF-VDAVIQLPSNLFSTTSIATSILVLKKNRKKDPIFFIDGSNEFV 421 Query: 291 RKLKNIVDPETKRKVIGQLFIEVFEE 316 R+ KN + I F EE Sbjct: 422 REKKNNRLSPKNIEKIVDCFNSKKEE 447 >gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. Length = 327 Score = 29.8 bits (67), Expect = 2.0 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 66 IDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQS-----REFGRAFIEIKK--- 117 + P +PKE L I LG I + + GK + +FG AFI+IKK Sbjct: 86 FNPPDLPKEALRDYILSLGERLSAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKR 145 Query: 118 NCSLLKGMWEKG 129 N +L + E G Sbjct: 146 NAKILYEVLESG 157 >gnl|CDD|180287 PRK05849, PRK05849, hypothetical protein; Provisional. Length = 783 Score = 29.6 bits (67), Expect = 2.0 Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 21/137 (15%) Query: 362 HMDMKLVEPLKELF-KDEVRLLGKELRLPDSFVERHPCPGPGL---AIRCIGEITEERIN 417 +D KL E L F ++E++ + L R P GL + I ++ E Sbjct: 369 TLDKKLEELLPGGFSENEIKRIEFSLLK---LTNRIISPKSGLFRKDLEKIEKLEERYKE 425 Query: 418 ILRESDA----IYR--EEIHK------AGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVC 465 +L + IY E+ + AGI R + A +L + +G + E ++ Sbjct: 426 LLNSNLDPLDKIYWLLEDCKRYGTLPFAGIARAAFVATQLLKSLVEIGALSQEELDAFLN 485 Query: 466 SLRAVTSIDGMTADFYH 482 SL V+ ++ D Sbjct: 486 SLNTVSKE--LSKDLNS 500 >gnl|CDD|129413 TIGR00313, cobQ, cobyric acid synthase CobQ. Length = 475 Score = 29.4 bits (66), Expect = 2.2 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 29 ESKVYCEVIAFKNALDYFKEQNPQAIILSGSPASSLD---IDSPQIPKEILE--SNIP-L 82 + + + + ++L A+I+ GS ++ D + +EIL+ + Sbjct: 268 RYEAFVKFLDLDDSLT-----GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIV 322 Query: 83 LGICYGQQIMCQSLGGKTKNSQSR 106 +GIC G Q++ + L K K Sbjct: 323 IGICGGYQMLGKELIDKEKKESDV 346 >gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional. Length = 562 Score = 29.6 bits (67), Expect = 2.2 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Query: 108 FGRAFIEIKKNCSLLKGMWEKGSKQQVWMSHGDQVEHI-----PEGFEVI 152 FG+ F +IKK L+ + +K ++W +G++ +I P FE+ Sbjct: 52 FGKPFRDIKKG-QLINSINKKDLLVELWFEYGEKEYYIKRGIKPNVFEIY 100 >gnl|CDD|182781 PRK10854, PRK10854, exopolyphosphatase; Provisional. Length = 513 Score = 29.3 bits (66), Expect = 2.6 Identities = 34/93 (36%), Positives = 39/93 (41%), Gaps = 17/93 (18%) Query: 345 GPSSIIKSHHNV-------GGL--PEHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVER 395 G S IK+ H V GL PE ++M + E LK K+ L LP ER Sbjct: 215 GASGTIKAAHEVLVEMGEKDGLITPERLEMLVKEVLK--HKNF-----AALSLPGLSEER 267 Query: 396 HPCPGPGLAIRCIGEITEERINILRESDAIYRE 428 PGLAI C G I LR SD RE Sbjct: 268 KTVFVPGLAILC-GVFDALAIRELRLSDGALRE 299 >gnl|CDD|179125 PRK00784, PRK00784, cobyric acid synthase; Provisional. Length = 488 Score = 28.9 bits (66), Expect = 3.0 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 14/57 (24%) Query: 50 NPQAIILSGSP----------ASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSL 96 + +IL GS S D I + P+LGIC G Q++ + + Sbjct: 290 DADLVILPGSKNTIADLAWLRESGWDEA---I-RAHARRGGPVLGICGGYQMLGRRI 342 >gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated. Length = 392 Score = 28.9 bits (65), Expect = 3.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 367 LVEPLKELFKDEVRLLGKELRLPD 390 LVEP EL +DEV + L +PD Sbjct: 8 LVEPAAELTRDEVARYSRHLIIPD 31 >gnl|CDD|179268 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional. Length = 482 Score = 29.0 bits (66), Expect = 3.3 Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 223 ERVICAVSGGVDSTVAAFLI 242 E V+ +SGG DS VA++++ Sbjct: 178 EDVLSLISGGFDSGVASYML 197 >gnl|CDD|181332 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional. Length = 450 Score = 28.7 bits (65), Expect = 3.4 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 327 LGQGTLYPDVIESISFFGGPSS 348 L QG L DV E+I++ P+S Sbjct: 411 LQQGGLPVDVAETIAWLASPAS 432 >gnl|CDD|149319 pfam08190, PIH1, pre-RNA processing PIH1/Nop17. This domain is involved in pre-rRNA processing. It has has been shown to be required either for nucleolar retention or correct assembly of the box C/D snoRNP in Saccharomyces cerevisiae. The C-terminal region of this family has similarity to the CS domain pfam04969. Length = 325 Score = 28.5 bits (64), Expect = 3.7 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Query: 171 YAVQFHPEVVHTVGGSQLIDNFVHHVA--GIQDN 202 Y V F+P+ + QL NF+ A GI+ Sbjct: 100 YDVVFNPDTLQKAEKDQLFRNFLIQTALEGIEQK 133 >gnl|CDD|179999 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase; Provisional. Length = 1290 Score = 28.6 bits (65), Expect = 3.9 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 13/68 (19%) Query: 83 LGICYGQQIMCQ--------SLGGKTKNSQSREF-GR-AFIEIKKNCSL-LKGMWEKGSK 131 LG+C G Q+M + ++S +F R + +E++++ S+ L+GM GS+ Sbjct: 1128 LGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGM--AGSR 1185 Query: 132 QQVWMSHG 139 + ++HG Sbjct: 1186 LPIAVAHG 1193 >gnl|CDD|148238 pfam06508, ExsB, ExsB. This family includes putative transcriptional regulators from Bacteria and Archaea. Length = 137 Score = 28.3 bits (64), Expect = 4.4 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 224 RVICAVSGGVDSTVAAFLIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVV 283 + + +SGG+DST + G + + D+G E+E + K ++V Sbjct: 1 KAVVLLSGGLDSTTCLA-WAKKEGYEVYALTFDYGQRHSKELECAKKIAKAL-GVEHKIV 58 Query: 284 DASERFIRKL 293 D F++++ Sbjct: 59 DLD--FLKQI 66 >gnl|CDD|180729 PRK06850, PRK06850, hypothetical protein; Provisional. Length = 507 Score = 28.0 bits (63), Expect = 5.8 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 10/45 (22%) Query: 210 KEIVSRIKEQVGNERVICA--------VSGGVDSTVAAFLIYEAI 246 E + + E++ + + CA SGG DST L++ A+ Sbjct: 16 GEPIEELIEEI--QELYCADNRPWVIGYSGGKDSTAVLQLVWNAL 58 >gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. Length = 439 Score = 28.1 bits (63), Expect = 5.9 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%) Query: 150 EVIASSDSTPFAFIADEKRK-----YYAVQFHPEVVHTVGG 185 E +AS TPF D YYA++ P V HT+GG Sbjct: 346 EYVASGKDTPFGRPMDMPDDLSKSPYYAIKVTPGVHHTMGG 386 >gnl|CDD|140333 PTZ00312, PTZ00312, inositol-1,4,5-triphosphate 5-phosphatase; Provisional. Length = 356 Score = 27.9 bits (62), Expect = 6.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 367 LVEPLKELFKDEVRLLGKELRLPDSFVE 394 L+E LKE + +V++ K +R PD F E Sbjct: 146 LLEWLKEKMQIDVKIEVKRVRAPDRFWE 173 >gnl|CDD|162511 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea. Length = 227 Score = 27.7 bits (62), Expect = 6.6 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 6/73 (8%) Query: 73 KEILESNIPLLGICYGQQIMCQS--LGGKTKNSQSREFGRAFIEIKK---NCSLLKGMWE 127 +E E +P+LGIC G QI+ ++ L G + S F ++ ++ + K ++ Sbjct: 72 REFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSLRFICRWVYLRVENADTIFTKN-YK 130 Query: 128 KGSKQQVWMSHGD 140 KG ++ ++HG+ Sbjct: 131 KGEVIRIPIAHGE 143 >gnl|CDD|179376 PRK02134, PRK02134, hypothetical protein; Provisional. Length = 249 Score = 28.0 bits (63), Expect = 6.7 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Query: 325 QFLGQGTLYPDVIES---------ISFFGGPSSIIKSHHNVGGLP 360 Q +GTL + I +S FG + + SHH+V LP Sbjct: 89 QLAEEGTLPLEEIAQELAAQYERFLSLFGRKPTHLDSHHHVHMLP 133 >gnl|CDD|184346 PRK13820, PRK13820, argininosuccinate synthase; Provisional. Length = 394 Score = 28.0 bits (63), Expect = 6.7 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%) Query: 221 GNERVICAVSGGVDSTVAAFLIYEAIGIN-LTCVLVDHG-----FMRKNEVENIISLFKG 274 ++V+ A SGG+D++V L+ E G + + V VD G E + K Sbjct: 1 MMKKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGD-KH 59 Query: 275 YPNFPLRVVDASERFIRKL 293 Y +DA E F + Sbjct: 60 Y------TIDAKEEFAKDY 72 >gnl|CDD|185607 PTZ00422, PTZ00422, glideosome-associated protein 50; Provisional. Length = 394 Score = 27.9 bits (62), Expect = 7.2 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 7/41 (17%) Query: 202 NWVMSSYHKEIV-SRIKEQVGNERVICAVS------GGVDS 235 NW S +++V S +K+ NERV VS GGVD Sbjct: 34 NWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDG 74 >gnl|CDD|179756 PRK04160, PRK04160, diphthine synthase; Provisional. Length = 258 Score = 27.5 bits (62), Expect = 9.6 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 402 GLAIRCIGEITEERINILRESDAIYRE 428 GL + +IT + + LR +D +Y E Sbjct: 6 GLGLYDERDITLKGLEALRNADKVYAE 32 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.138 0.408 Gapped Lambda K H 0.267 0.0760 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,778,094 Number of extensions: 592356 Number of successful extensions: 1408 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1362 Number of HSP's successfully gapped: 116 Length of query: 520 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 422 Effective length of database: 3,876,889 Effective search space: 1636047158 Effective search space used: 1636047158 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.4 bits)