BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus
Liberibacter asiaticus str. psy62]
(520 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/520 (100%), Positives = 520/520 (100%)
Query: 1 MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSP 60
MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSP
Sbjct: 1 MHKRERSSKVLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILSGSP 60
Query: 61 ASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCS 120
ASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCS
Sbjct: 61 ASSLDIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCS 120
Query: 121 LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVV 180
LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVV
Sbjct: 121 LLKGMWEKGSKQQVWMSHGDQVEHIPEGFEVIASSDSTPFAFIADEKRKYYAVQFHPEVV 180
Query: 181 HTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAF 240
HTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAF
Sbjct: 181 HTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQVGNERVICAVSGGVDSTVAAF 240
Query: 241 LIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPE 300
LIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPE
Sbjct: 241 LIYEAIGINLTCVLVDHGFMRKNEVENIISLFKGYPNFPLRVVDASERFIRKLKNIVDPE 300
Query: 301 TKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLP 360
TKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLP
Sbjct: 301 TKRKVIGQLFIEVFEEEAKKIGGAQFLGQGTLYPDVIESISFFGGPSSIIKSHHNVGGLP 360
Query: 361 EHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILR 420
EHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILR
Sbjct: 361 EHMDMKLVEPLKELFKDEVRLLGKELRLPDSFVERHPCPGPGLAIRCIGEITEERINILR 420
Query: 421 ESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADF 480
ESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADF
Sbjct: 421 ESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADF 480
Query: 481 YHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
YHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE
Sbjct: 481 YHHDMNFLSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
>gi|254780420|ref|YP_003064833.1| carbamoyl phosphate synthase small subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 396
Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 10 VLIIDFGSQFTQLIARRVRESKVYCEVIAFKNALDYFKEQNPQAIILS---GSPASSLDI 66
V+ ID+G + L R + ++ + + P ++LS G PA +
Sbjct: 208 VVCIDYGIRSNLL--RVLSSLGCRITIVGAETSYKDIMSLQPDGVLLSNGPGDPAVTSVY 265
Query: 67 DSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMW 126
SP I K +++S +P+ GIC G Q++ +LG +T G KN S
Sbjct: 266 SSPIICK-LVDSGMPMFGICLGHQLLGLALGAQTVKMYQGHHGVN--HPVKNIS------ 316
Query: 127 EKGSKQQVWMSHGDQVE--HIPEGFEV--IASSDSTPFAF-IADEKRKYYAVQFHPE 178
G+ + V M+HG ++ +P G E I+ DS+ F + D+ ++VQ+HPE
Sbjct: 317 -NGTVEIVSMNHGFAIDASSLPAGLEETHISLFDSSNCGFRLIDQ--PVFSVQYHPE 370
>gi|254780195|ref|YP_003064608.1| CTP synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 544
Score = 33.9 bits (76), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 77 ESNIPLLGICYGQQI----MCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKGMWEKGSKQ 132
E+ IP LGIC+G Q+ ++L G N+ S EF A + + L W KG +Q
Sbjct: 373 ENKIPFLGICFGMQMAVIEAARNLAG-IPNACSTEFSEAGVPVIA----LMSEWMKGDQQ 427
Query: 133 QVWMSHGD 140
+ + D
Sbjct: 428 EKRLPSDD 435
>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 31.6 bits (70), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Query: 224 RVICAVSGGVDSTVAAFLI----YEAIGINL 250
RV+ A+SGGVDS+V A L+ Y+ IG+ L
Sbjct: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 29.3 bits (64), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 161 AFIADEKRKYYAVQFHPEVVHTVGGSQLIDNFVHHVAGIQDNWVMSSYHKEIVSRIKEQV 220
A IAD K A Q + + + + LI + AGI + Y I S ++++
Sbjct: 58 AGIADGKNCSIAKQMNDQTELAINEAHLILFLIDSKAGI------TPYDHAITSFLRKK- 110
Query: 221 GNERVICAVSGGVDSTVAAFLIYEAIGINLTCVL---VDHGFMRKNEVENIISLFK-GYP 276
I VS +D+ +A YE ++ ++ +H I +FK YP
Sbjct: 111 --NIPIIIVSNKMDTRIAQRNFYEIYSLDFKEIVEISAEHDLGTSELHSVIFKIFKQKYP 168
Query: 277 NFPLRVVDASER 288
N PL +++ ++R
Sbjct: 169 NHPLEMIENNKR 180
>gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62]
Length = 562
Score = 28.1 bits (61), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 224 RVICAVSGGVDSTVAAFLIYEAIGI-NLTCVLVDHGFMRKNEVENIISLFKG 274
+VI +SGG+DS + A + +A+G N+ +++ + + +E+ + K
Sbjct: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKA 345
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 432 KAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTADFYHHDMNFLSQV 491
+A I R + ++L + + E E V + + +GMT H+M F QV
Sbjct: 160 RAAIARSLCMQPKIMLFDEPTSALDPEMVKE-VLDIMIELAEEGMTMVCVTHEMGFARQV 218
Query: 492 AIRIV 496
A R+V
Sbjct: 219 ADRVV 223
>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 440
Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 488 LSQVAIRIVNEVKGINRVVYDITSKPPATIEWE 520
+S A+RIV EV + +VY + S+P TI +E
Sbjct: 365 VSSGAVRIVEEVGTLADMVYSLLSEP--TIRYE 395
>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 496
Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 421 ESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSID 474
E+ I R + H RKI ++ +G+ GD++ E + LRA+ +D
Sbjct: 156 EAVGIKRNDYHIGINNRKILDGI-----LEKIGLHGDDKLNERLIVLRAIDKLD 204
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 23.9 bits (50), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 273 KGYPNFPLRVVDASERFIRKLKNIVDPETKRKVI 306
K N + V+D E ++ ++NI D + RK++
Sbjct: 168 KELANMTISVIDPIENYVALMENIFDFDAIRKLL 201
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 23.9 bits (50), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 270 SLFKGYPNFPLRVVDASERFIRKLKNIVDPET 301
S+ KGY +F V+D + + KL +V+ ET
Sbjct: 469 SVSKGYASFDYNVIDYRDSDLVKLTILVNNET 500
>gi|254781095|ref|YP_003065508.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 318
Score = 23.5 bits (49), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 65 DIDSPQIPKEILESNIPLLGICYGQQIMCQSLGGKTKNSQSREFGRAFIEIKKNCSLLKG 124
DI + +L S+IP+ + G I+ + G + + G + IE++ +C ++ G
Sbjct: 47 DIHDLKYFLTLLPSDIPITIVGLGSNILVRDAGIRGVVLRLSNAGFSNIEVRNHCEMIVG 106
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 344,028
Number of Sequences: 1233
Number of extensions: 14974
Number of successful extensions: 41
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 15
length of query: 520
length of database: 328,796
effective HSP length: 78
effective length of query: 442
effective length of database: 232,622
effective search space: 102818924
effective search space used: 102818924
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)