HHsearch alignment for GI: 254780416 and conserved domain: PRK08348

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=99.43  E-value=1.8e-14  Score=97.60  Aligned_cols=58  Identities=28%  Similarity=0.657  Sum_probs=49.3

Q ss_pred             CEEECHHCCCCCCCCHHHHCCCCCCCCCC--CEEEEEHHHCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             67747220897997526747774311467--4479940130257715878742002566763
Q gi|254780416|r    2 TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEP   61 (113)
Q Consensus         2 ~yvv~~~C~~C~~~~Cv~~CP~~ai~~~~--~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~~   61 (113)
T Consensus        37 ~~~d~dkCigC--~~C~~~CP~~aI~~~~~~~~~~i~~~~Ci~Cg~C~~~CP~~AI~~t~~~   96 (111)
T PRK08348         37 ILYNVDKCVGC--RMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQMSDDF   96 (111)
T ss_pred             EECCCCCCCCC--CHHHHHCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCEE
T ss_conf             05685528280--7287759322067527766678777908538875773772836876803