HHsearch alignment for GI: 254780416 and conserved domain: PRK08348
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=99.43 E-value=1.8e-14 Score=97.60 Aligned_cols=58 Identities=28% Similarity=0.657 Sum_probs=49.3
Q ss_pred CEEECHHCCCCCCCCHHHHCCCCCCCCCC--CEEEEEHHHCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 67747220897997526747774311467--4479940130257715878742002566763
Q gi|254780416|r 2 TYVVTENCILCKHTDCVEVCPVDCFYEGE--NFLAIHPDECIDCGVCEPECPVDAIKPDTEP 61 (113)
Q Consensus 2 ~yvv~~~C~~C~~~~Cv~~CP~~ai~~~~--~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~~ 61 (113)
T Consensus 37 ~~~d~dkCigC--~~C~~~CP~~aI~~~~~~~~~~i~~~~Ci~Cg~C~~~CP~~AI~~t~~~ 96 (111)
T PRK08348 37 ILYNVDKCVGC--RMCVTVCPAGVFVYLPEIRKVALWTGRCVFCGQCVDVCPTGALQMSDDF 96 (111)
T ss_pred EECCCCCCCCC--CHHHHHCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCEE
T ss_conf 05685528280--7287759322067527766678777908538875773772836876803