HHsearch alignment for GI: 254780416 and conserved domain: PRK08348

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=98.03  E-value=1.4e-06  Score=55.02  Aligned_cols=31  Identities=23%  Similarity=0.577  Sum_probs=26.7

Q ss_pred             CCEEEEEHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             7447994013025771587874200256676
Q gi|254780416|r   30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTE   60 (113)
Q Consensus        30 ~~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~   60 (113)
T Consensus        34 RG~~~~d~dkCigC~~C~~~CP~~aI~~~~~   64 (111)
T PRK08348         34 RGKILYNVDKCVGCRMCVTVCPAGVFVYLPE   64 (111)
T ss_pred             CCEEECCCCCCCCCCHHHHHCCCCCCEECCC
T ss_conf             7820568552828072877593220675277