HHsearch alignment for GI: 254780416 and conserved domain: PRK08348
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional.
Probab=98.03 E-value=1.4e-06 Score=55.02 Aligned_cols=31 Identities=23% Similarity=0.577 Sum_probs=26.7
Q ss_pred CCEEEEEHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 7447994013025771587874200256676
Q gi|254780416|r 30 ENFLAIHPDECIDCGVCEPECPVDAIKPDTE 60 (113)
Q Consensus 30 ~~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~ 60 (113)
T Consensus 34 RG~~~~d~dkCigC~~C~~~CP~~aI~~~~~ 64 (111)
T PRK08348 34 RGKILYNVDKCVGCRMCVTVCPAGVFVYLPE 64 (111)
T ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCEECCC
T ss_conf 7820568552828072877593220675277