HHsearch alignment for GI: 254780416 and conserved domain: TIGR00403
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase, I subunit; InterPro: IPR004497 NADH-plastoquinone oxidoreductase subunit I (1.6.5.3 from EC) catalyses the conversion of plastoquinone and NADH to plastoquinol and NAD(+). The enzyme binds two 4FE-4S clusters at iron-sulphur centres which are similar to those of the bacterial-type 4FE-4S ferredoxins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006118 electron transport.
Probab=97.32 E-value=2.3e-05 Score=48.48 Aligned_cols=69 Identities=28% Similarity=0.598 Sum_probs=49.5
Q ss_pred EEECHHCCCCCCCCHHHHCCCCCCC----------CCC-CEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 7747220897997526747774311----------467-44799401302577158787420025667634689999999
Q gi|254780416|r 3 YVVTENCILCKHTDCVEVCPVDCFY----------EGE-NFLAIHPDECIDCGVCEPECPVDAIKPDTEPGLELWLKINS 71 (113)
Q Consensus 3 yvv~~~C~~C~~~~Cv~~CP~~ai~----------~~~-~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~~~~~~~~~~n~ 71 (113)
T Consensus 59 hfefdkCiaCe--vCvrvCPi~lP~vdW~~~k~~k~k~l~~ysidfGvCifCGnCveyCPtnClsmteeyel~~y~rh~l 136 (187)
T TIGR00403 59 HFEFDKCIACE--VCVRVCPINLPVVDWEFEKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 136 (187)
T ss_pred EEEECCEEEEE--EEEEEECCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCHHCC
T ss_conf 65313334423--4567621436312045554677767753000000467644721005753000000011100000002
Q ss_pred HH
Q ss_conf 99
Q gi|254780416|r 72 EY 73 (113)
Q Consensus 72 ~~ 73 (113)
T Consensus 137 ny 138 (187)
T TIGR00403 137 NY 138 (187)
T ss_pred CH
T ss_conf 31