HHsearch alignment for GI: 254780416 and conserved domain: TIGR02494
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=98.72 E-value=3.6e-09 Score=68.98 Aligned_cols=83 Identities=27% Similarity=0.567 Sum_probs=56.0
Q ss_pred EEECHHCCCCCCCCHHHHCCCC---------CCCCCCCEEEEEHHHCCCCCHHHHHHHHHHCCCCCC----CCHHHHHHH
Q ss_conf 7747220897997526747774---------311467447994013025771587874200256676----346899999
Q gi|254780416|r 3 YVVTENCILCKHTDCVEVCPVD---------CFYEGENFLAIHPDECIDCGVCEPECPVDAIKPDTE----PGLELWLKI 69 (113)
Q Consensus 3 yvv~~~C~~C~~~~Cv~~CP~~---------ai~~~~~~~~id~~~Ci~Cg~C~~~CP~~AI~~d~~----~~~~~~~~~ 69 (113)
T Consensus 44 ~f~~~~C~~C--~~C~~~C~~~IHTkta~~~~~~~~~~~~~~~~~~c~~Cg~C~~~Cp~~Al~~~G~~~tV~ev~~~~~~ 121 (305)
T TIGR02494 44 LFKENRCLGC--GKCVEVCPAGIHTKTARLVERLDGRNIISIRREKCTGCGKCTEACPSGALEIVGKEMTVEEVMRVVLR 121 (305)
T ss_pred EEECCCCCCC--CHHHHHCCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCHHHCCCCHHHHEECCCCCHHHHHHHHHH
T ss_conf 4200234430--01454324542332067787641786010000177411101103840064202451488999999986
Q ss_pred HHHHHHH-CCCCCCCC-CCC
Q ss_conf 9999986-88722156-878
Q gi|254780416|r 70 NSEYATQ-WPNITTKK-ESL 87 (113)
Q Consensus 70 n~~~a~~-~p~I~~k~-~pl 87 (113)
T Consensus 122 D~~fY~~SGGGvTlSGGEPl 141 (305)
T TIGR02494 122 DSIFYRNSGGGVTLSGGEPL 141 (305)
T ss_pred HHHHHHHCCCEEEECCCCCC
T ss_conf 55666513990673487114