HHsearch alignment for GI: 254780416 and conserved domain: TIGR02936
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific; InterPro: IPR014283 This entry consists of ferredoxins which are encoded in the nitrogen fixation regions of many nitrogen-fixing bacteria. The charcterised protein from Rhodobacter capsulatus (Rhodopseudomonas capsulata) is homodimeric and contains two [4Fe-4S] clusters bound per monomer. Although nif-specific, these prtoeins are not universal in nitrogen-fixers as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin. .
Probab=96.52 E-value=0.0005 Score=41.23 Aligned_cols=29 Identities=31% Similarity=0.791 Sum_probs=23.9
Q ss_pred CCEE-EEEHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 7447-9940130257715878742002566
Q gi|254780416|r 30 ENFL-AIHPDECIDCGVCEPECPVDAIKPD 58 (113)
Q Consensus 30 ~~~~-~id~~~Ci~Cg~C~~~CP~~AI~~d 58 (113)
T Consensus 12 P~f~~~ID~~kCIGCGRCfKVCgr~Vl~L~ 41 (96)
T TIGR02936 12 PQFVTSIDQEKCIGCGRCFKVCGRDVLTLK 41 (96)
T ss_pred CHHHHHCCHHCCCCCCCCCCCCCCCCCEEE
T ss_conf 123311143107545463141786764222