HHsearch alignment for GI: 254780416 and conserved domain: TIGR03149
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.25 E-value=5.2e-07 Score=57.32 Aligned_cols=53 Identities=25% Similarity=0.592 Sum_probs=41.6
Q ss_pred EEECHHCCCCCCCCHHHHCCCCCCCCCCCEEEEEHHHCCCC----------CHHHHHHHHHHCCCCC
Q ss_conf 77472208979975267477743114674479940130257----------7158787420025667
Q gi|254780416|r 3 YVVTENCILCKHTDCVEVCPVDCFYEGENFLAIHPDECIDC----------GVCEPECPVDAIKPDT 59 (113)
Q Consensus 3 yvv~~~C~~C~~~~Cv~~CP~~ai~~~~~~~~id~~~Ci~C----------g~C~~~CP~~AI~~d~ 59 (113)
T Consensus 121 ~vd~~~CiGC~--~C~~aCPy~a~~~~~~~~~--~~KC~~C~~~r~~~G~~PaCv~aCp~~A~~FGd 183 (225)
T TIGR03149 121 DVHKDLCVGCQ--YCIAACPYRVRFIHPVTKS--ADKCNFCRDTNLAEGKLPACVESCPTKALTFGD 183 (225)
T ss_pred EEEHHHCCCHH--HHHHCCCCCCCEECCCCCC--CCCCCCCCCCHHHCCCCCCCHHHCCCCCEEEEC
T ss_conf 97568694041--8986199998354888896--873708600275679988714238777878822