HHsearch alignment for GI: 254780416 and conserved domain: TIGR03336
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.85 E-value=1e-09 Score=71.96 Aligned_cols=48 Identities=40% Similarity=0.925 Sum_probs=41.6
Q ss_pred EEECHHCCCCCCCCHHH--HCCCCCCCCCCCEEEEEHHHCCCCCHHHHHHHHHHC
Q ss_conf 77472208979975267--477743114674479940130257715878742002
Q gi|254780416|r 3 YVVTENCILCKHTDCVE--VCPVDCFYEGENFLAIHPDECIDCGVCEPECPVDAI 55 (113)
Q Consensus 3 yvv~~~C~~C~~~~Cv~--~CP~~ai~~~~~~~~id~~~Ci~Cg~C~~~CP~~AI 55 (113)
T Consensus 546 ~In~~vC~gC--g~C~~~s~Cp--ai~~~~~k~~id~-~Cngc~~C~~~CP~~AI 595 (595)
T TIGR03336 546 KVDQDKCIGC--KKCIKELGCP--AIEPEDKEAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred EECHHHCCCC--CCCCCCCCCC--EEEECCCEEEECC-CCCCCCCHHHHCCCCCC
T ss_conf 9735327884--0003343782--1773599078885-05497744654889879