HHsearch alignment for GI: 254780416 and conserved domain: TIGR03379
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=97.53 E-value=1.5e-05 Score=49.42 Aligned_cols=47 Identities=38% Similarity=0.793 Sum_probs=32.0
Q ss_pred CHHCCCCCCCCHHHHCCCCCCC--------CCCC--EE------EEE--HHHCCCCCHHHHHHHHHH
Q ss_conf 7220897997526747774311--------4674--47------994--013025771587874200
Q gi|254780416|r 6 TENCILCKHTDCVEVCPVDCFY--------EGEN--FL------AIH--PDECIDCGVCEPECPVDA 54 (113)
Q Consensus 6 ~~~C~~C~~~~Cv~~CP~~ai~--------~~~~--~~------~id--~~~Ci~Cg~C~~~CP~~A 54 (113)
T Consensus 4 ~d~Ci~C--G~C~~~CP~~~~~~~~~g~~~~~~~g~~~~l~~~~~~~~~l~~C~~C~~C~~~CP~gV 68 (397)
T TIGR03379 4 FESCIKC--TVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred HHHCCCC--CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 1227588--9883738685457888872540844676650364434156163827688365387999